BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780548|ref|YP_003064961.1| translocation protein TolB [Candidatus Liberibacter asiaticus str. psy62] (447 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780548|ref|YP_003064961.1| translocation protein TolB [Candidatus Liberibacter asiaticus str. psy62] gi|254040225|gb|ACT57021.1| translocation protein TolB [Candidatus Liberibacter asiaticus str. psy62] Length = 447 Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/447 (100%), Positives = 447/447 (100%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE Sbjct: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG Sbjct: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV Sbjct: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY Sbjct: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT Sbjct: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL Sbjct: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS Sbjct: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDLNGRNETLINTPAYASDPQWVGFMD Sbjct: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 >gi|315122876|ref|YP_004063365.1| translocation protein TolB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496278|gb|ADR52877.1| translocation protein TolB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 435 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/435 (72%), Positives = 369/435 (84%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M + + LLLVL+ GFF + A VKV N+++YSPVSIA T FVS+DELGGK SEV+SK+ Sbjct: 1 MNVKIFLLLVLVSGFFSVPVQALVKVNVNNSDYSPVSIAVTDFVSLDELGGKFSEVISKN 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQ+SDVF I Q SFKQKITNPD PRF DW SLGAQVLV GRVIKEGKDRLRVEFRLWD Sbjct: 61 LQKSDVFTQIPQGSFKQKITNPDITPRFHDWQSLGAQVLVMGRVIKEGKDRLRVEFRLWD 120 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 +KDRKQI+GKKFF+SP WR++AH ISD+IYQ+ITGEK FN+R+LFVSES+VSG+IKN Sbjct: 121 IKDRKQILGKKFFASPVDWRRLAHIISDEIYQNITGEKSYFNTRLLFVSESIVSGVIKNR 180 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 LC+MD+DG N+RYLTP+ D+ILF P+F P QQKVAYA+YDDEDIL+VYLMD RIDRAPKR Sbjct: 181 LCLMDQDGFNVRYLTPNSDRILFTPQFYPKQQKVAYASYDDEDILKVYLMDIRIDRAPKR 240 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 IGNFR M ++PRFS +G R ++ VQK+ A+D+Y+VD+ S A +RLTNTLF NIS SYSPD Sbjct: 241 IGNFRGMNISPRFSLDGNRVIMGVQKEGAIDLYNVDVHSYAFKRLTNTLFANISPSYSPD 300 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 SSQIVFESDREGK+QLYVMQS+GSDQ+RISQDK+A YFDP WSP ++IAFTKFS KFA Sbjct: 301 SSQIVFESDREGKQQLYVMQSDGSDQRRISQDKDAFYFDPSWSPNDNIIAFTKFSEGKFA 360 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IGVM+ DGSQER+LV D NLQ P WSP+GRSLIF+RKK D GSKLYSI+LNGRNE LIN Sbjct: 361 IGVMRVDGSQERILVTDFNLQTPIWSPNGRSLIFARKKMDDIGSKLYSINLNGRNEMLIN 420 Query: 433 TPAYASDPQWVGFMD 447 TPAYA DP W+ +D Sbjct: 421 TPAYALDPHWIAPVD 435 >gi|159185873|ref|NP_356906.2| translocation protein TolB [Agrobacterium tumefaciens str. C58] gi|32699707|sp|Q8U9L4|TOLB_AGRT5 RecName: Full=Protein tolB; Flags: Precursor gi|159141007|gb|AAK89691.2| tolB protein [Agrobacterium tumefaciens str. C58] Length = 435 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 209/433 (48%), Positives = 295/433 (68%), Gaps = 4/433 (0%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 I L L + + F A V++ N N P+ IA T F+S D +G +VS V++ DLQ Sbjct: 7 IRLVLAIAALMSVFSAPAFARVEININKGNVEPLPIAITDFMSSDGIGAQVSAVIAADLQ 66 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F +++++F +KI+NPD PRF+DW + AQ LVTGRV +E RLR EFRLWD Sbjct: 67 RSGLFAPVNKNAFIEKISNPDQQPRFEDWKVINAQALVTGRVTRESDGRLRAEFRLWDTF 126 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q+ G++FF+ P +WR++AH I+D IY+ +TGEKG F++R++FVSES K L Sbjct: 127 AGQQLSGQQFFTQPENWRRVAHIIADAIYERVTGEKGYFDTRVVFVSESGPKTARKRQLS 186 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DG N+R LT S D I+ PRFSPN+Q+V Y +++ + RVYL+ + + +G Sbjct: 187 IMDQDGFNVRNLTNSND-IVLTPRFSPNRQEVTYMSFEGQQ-PRVYLLQLETGQR-EVVG 243 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLTNT I+ + SYSPD Sbjct: 244 NFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRTTTRLTNTAAIDTAPSYSPDGQ 303 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++ FESDR G++Q+YVM ++GS Q+R+S + SY PVWSP+GDLIAFTK SG KF+IG Sbjct: 304 RVAFESDRGGRQQIYVMNADGSGQQRVSFG-DGSYSTPVWSPRGDLIAFTKQSGGKFSIG 362 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE LI TP Sbjct: 363 VMKTDGSGERILTSGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLIKTP 422 Query: 435 AYASDPQWVGFMD 447 +ASDP W +D Sbjct: 423 TFASDPAWSPLLD 435 >gi|332716443|ref|YP_004443909.1| protein tolB precursor [Agrobacterium sp. H13-3] gi|325063128|gb|ADY66818.1| protein tolB precursor [Agrobacterium sp. H13-3] Length = 443 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/440 (48%), Positives = 296/440 (67%), Gaps = 8/440 (1%) Query: 12 NMKI----NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 NMKI L L + + F A V++ N N P+ IA T F+S D +G +VS Sbjct: 8 NMKIFSPIRLVLAVAALMSVFSAPAFARVEININKGNVEPLPIAITDFISGDGIGAQVSA 67 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DLQRS +F +++ +F +KI NPD PRF+DW + AQ LVTGRV +E RLR E Sbjct: 68 VIAADLQRSGLFAPVNKSAFIEKIANPDQQPRFEDWKVINAQALVTGRVTRESDGRLRAE 127 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++FF+ P +WR++AH I+D IY+ +TGEKG F++R++FVSES Sbjct: 128 FRLWDTFAGQQMTGQQFFTQPENWRRVAHIIADAIYERVTGEKGYFDTRVVFVSESGPKT 187 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L +MD+DG N+R LT S D I+ PRFSPN+Q+V Y +++ + RVYL+ Sbjct: 188 ARKRQLSIMDQDGFNVRNLTNSND-IVLTPRFSPNRQEVTYMSFEGQQ-PRVYLLQLETG 245 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLTNT I+ + Sbjct: 246 QR-EVVGNFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRTTTRLTNTSAIDTAP 304 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD ++ FESDR G++Q+YVM ++GS Q+RIS + SY PVWSP+GDLIAFTK S Sbjct: 305 SFSPDGQRVAFESDRGGRQQIYVMNADGSGQQRIS-FGDGSYSTPVWSPRGDLIAFTKQS 363 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G N Sbjct: 364 GGKFSIGVMKTDGSGERILTSGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYN 423 Query: 428 ETLINTPAYASDPQWVGFMD 447 E LI TP +ASDP W +D Sbjct: 424 EQLIKTPTFASDPAWSPLLD 443 >gi|15966492|ref|NP_386845.1| translocation protein TolB [Sinorhizobium meliloti 1021] gi|32699712|sp|Q926C2|TOLB_RHIME RecName: Full=Protein tolB; Flags: Precursor gi|15075763|emb|CAC47318.1| Probable TolB protein precursor [Sinorhizobium meliloti 1021] Length = 436 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/431 (49%), Positives = 296/431 (68%), Gaps = 5/431 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L ++LV G + +A V++ N N P+ IA T F+ EL K+S V++ DL+RS Sbjct: 11 LLMVLVAGCGLIASPANALVEININKGNVEPLPIAITDFLQ-GELAQKISGVIAADLKRS 69 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I + +F +KI+NPD+ PRF+DW + AQ LV GRV +EG RL+ EFRLWD Sbjct: 70 GLFAPIDKGAFIEKISNPDATPRFEDWKVINAQALVIGRVTQEGDGRLKAEFRLWDTFAG 129 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V+ES K L +M Sbjct: 130 QQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPKNARKRQLAIM 189 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN R LT S D I+ PRFSPN+Q++ Y +++++ RVYL+ + + +GNF Sbjct: 190 DQDGANSRALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVYLLQLETGQR-EVVGNF 246 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT I+ S SYSPD S+I Sbjct: 247 PGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSRI 306 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VFESDR GK+QLYVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVM Sbjct: 307 VFESDRGGKQQLYVMGADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQSGGKFSIGVM 365 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ T + Sbjct: 366 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLVQTQGF 425 Query: 437 ASDPQWVGFMD 447 ASDP W M+ Sbjct: 426 ASDPAWSPLME 436 >gi|307300471|ref|ZP_07580251.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti BL225C] gi|307318336|ref|ZP_07597771.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti AK83] gi|306896018|gb|EFN26769.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti AK83] gi|306904637|gb|EFN35221.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti BL225C] Length = 434 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/431 (49%), Positives = 296/431 (68%), Gaps = 5/431 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L ++LV G + +A V++ N N P+ IA T F+ EL K+S V++ DL+RS Sbjct: 9 LLMVLVAGCGLIASPANALVEININKGNVEPLPIAITDFLQ-GELAQKISGVIAADLKRS 67 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I + +F +KI+NPD+ PRF+DW + AQ LV GRV +EG RL+ EFRLWD Sbjct: 68 GLFAPIDKGAFIEKISNPDATPRFEDWKVINAQALVIGRVTQEGDGRLKAEFRLWDTFAG 127 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V+ES K L +M Sbjct: 128 QQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPKNARKRQLAIM 187 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN R LT S D I+ PRFSPN+Q++ Y +++++ RVYL+ + + +GNF Sbjct: 188 DQDGANSRALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVYLLQLETGQR-EVVGNF 244 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT I+ S SYSPD S+I Sbjct: 245 PGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSRI 304 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VFESDR GK+QLYVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVM Sbjct: 305 VFESDRGGKQQLYVMGADGSGQTRISFG-DGSYSTPVWSPRGDLIAFTKQSGGKFSIGVM 363 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ T + Sbjct: 364 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLVQTQGF 423 Query: 437 ASDPQWVGFMD 447 ASDP W M+ Sbjct: 424 ASDPAWSPLME 434 >gi|150397825|ref|YP_001328292.1| translocation protein TolB [Sinorhizobium medicae WSM419] gi|166229991|sp|A6UCS7|TOLB_SINMW RecName: Full=Protein tolB; Flags: Precursor gi|150029340|gb|ABR61457.1| Tol-Pal system beta propeller repeat TolB [Sinorhizobium medicae WSM419] Length = 436 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/431 (48%), Positives = 296/431 (68%), Gaps = 5/431 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L ++LV G + A V++ N N P+ IA T FV EL K+S+V++ DL+RS Sbjct: 11 LLMVLVAGCGLIASPAKALVEIDINKGNVEPLPIAITDFVQ-GELAQKISDVIAADLKRS 69 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I++ +F +K++NPD+ PRF+DW + AQ LV GRV KEG RL+ EFRLWD Sbjct: 70 GLFAPINKGAFIEKVSNPDATPRFEDWKVINAQALVIGRVTKEGDGRLKAEFRLWDTFAG 129 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V+ES + L +M Sbjct: 130 TQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPKNARQRQLAIM 189 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN R LT S D I+ PRFSPN+Q++ Y +++++ RVYL+ + + +GNF Sbjct: 190 DQDGANSRALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVYLLQLETGQR-EVVGNF 246 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT I+ S SYSPD S++ Sbjct: 247 PGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSRV 306 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VFESDR G++QLYVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVM Sbjct: 307 VFESDRGGRQQLYVMGADGSGQTRISFG-DGSYSTPVWSPRGDLIAFTKQSGGKFSIGVM 365 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ T + Sbjct: 366 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLVPTQGF 425 Query: 437 ASDPQWVGFMD 447 ASDP W M+ Sbjct: 426 ASDPAWSPLME 436 >gi|163758790|ref|ZP_02165877.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43] gi|162284080|gb|EDQ34364.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43] Length = 450 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/448 (46%), Positives = 307/448 (68%), Gaps = 5/448 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTS-IHAFVKVATNSANYSPVSIAFTKFVSID 59 M+L+ +N + +V F +S A V++ N AN P+ IA T F+S D Sbjct: 7 MALKGCTMNLMNRLVLFPFAIVAALAFLASSPARAVVEIDINRANVEPLPIAITDFLSDD 66 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 +G ++S VV+ DL+RS +F I++ +F ++I+NPD+ PRF+DW + AQ LV GRV++E Sbjct: 67 AIGAQISAVVAADLKRSGLFAPIAKGAFIERISNPDASPRFEDWRVINAQALVVGRVVRE 126 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 RLR EFRLWD +Q+ G++FF+SP +WR++AH I+D IY+ +TGEKG F+SR++F Sbjct: 127 SDGRLRAEFRLWDTFASQQLTGEQFFTSPENWRRVAHIIADAIYERLTGEKGYFDSRVVF 186 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VSES + L +MD+DGAN+R LT + I+ PRFSP++Q++ Y +++ RV Sbjct: 187 VSESGPKTDRQKQLAIMDQDGANVRMLTDA-SSIVLTPRFSPSRQEITYMSFEGGQP-RV 244 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL+ + + +GNF M +PRFS +G++ ++S+Q+D +IY++DL+S AT RLT+ Sbjct: 245 YLLQLETGQR-ELVGNFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRATTRLTS 303 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 T I+ S SYSPD +QIVFESDR G++QLY+M ++GS+Q+R+S + SY PVWSP+GD Sbjct: 304 TAAIDTSPSYSPDGTQIVFESDRGGRQQLYIMNADGSNQRRVSFG-DGSYSTPVWSPRGD 362 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 LIAFTK SG KF+IGVM+ DGS ER+L + + PTW+P+GR L+F R+ G G ++Y Sbjct: 363 LIAFTKQSGGKFSIGVMRTDGSGERILTTGFHNEGPTWAPNGRVLMFFRQPAGAGGPQIY 422 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 SIDL G NE L++TP +ASDP W ++ Sbjct: 423 SIDLTGYNEQLVSTPTFASDPAWSPLLE 450 >gi|239832783|ref|ZP_04681112.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum intermedium LMG 3301] gi|239825050|gb|EEQ96618.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum intermedium LMG 3301] Length = 475 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/431 (47%), Positives = 293/431 (67%), Gaps = 7/431 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 51 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGPNITSVIAADLERSG 108 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 109 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 168 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV ES + L +MD Sbjct: 169 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVDESGPAQKRVKRLAIMD 228 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+RY++ R I PRFSPN+Q+V Y +Y+ +VYL+ + + +GNF Sbjct: 229 QDGANVRYISDGR-AISLTPRFSPNRQEVTYMSYEG-GTPKVYLLQLETGQR-ELVGNFP 285 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ +T RLTN+ I+ ASYSPD SQI Sbjct: 286 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTTRLTNSQAIDTGASYSPDGSQI 345 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 346 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 404 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 405 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 464 Query: 437 ASDPQWVGFMD 447 ASDP W ++ Sbjct: 465 ASDPAWSPLLE 475 >gi|153008549|ref|YP_001369764.1| translocation protein TolB [Ochrobactrum anthropi ATCC 49188] gi|166229982|sp|A6WY81|TOLB_OCHA4 RecName: Full=Protein tolB; Flags: Precursor gi|151560437|gb|ABS13935.1| Tol-Pal system beta propeller repeat TolB [Ochrobactrum anthropi ATCC 49188] Length = 443 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/431 (47%), Positives = 294/431 (68%), Gaps = 7/431 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGPNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+RY++ R I PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRYISDGR-AISLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ +T RLTN+ I+ SASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTTRLTNSQAIDTSASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFSSDRGGRPQLYVMGADGSNPRRISAG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQWVGFMD 447 ASDP W ++ Sbjct: 433 ASDPAWSPLLE 443 >gi|222149663|ref|YP_002550620.1| translocation protein TolB [Agrobacterium vitis S4] gi|254764836|sp|B9JRY0|TOLB_AGRVS RecName: Full=Protein tolB; Flags: Precursor gi|221736645|gb|ACM37608.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium vitis S4] Length = 435 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/433 (48%), Positives = 291/433 (67%), Gaps = 6/433 (1%) Query: 17 LCLLLVLIG--GFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+VL+G G F T A V++ N N P+ IA F+S + +G K+S VV DL+ Sbjct: 7 LRILIVLVGMAGAFATPAMALVEININKGNVEPMPIAIPDFLSANGIGAKISAVVEADLK 66 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F ++ +F K NPD P Q+W L AQ LV GR+ +EG RLR EFRLWD Sbjct: 67 RSGLFAPVNHGAFIDKQINPDQAPNMQNWTVLNAQALVVGRITQEGDGRLRAEFRLWDTY 126 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q+ G++F++ P +WR++AH I+D IY+ ITGEKG F++RI+FV+ES K L Sbjct: 127 AGQQMSGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVFVAESGTKTDRKRQLA 186 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DG N+R LT + + +L PRFSPN+Q+V Y +++ RVYL+ + + +G Sbjct: 187 IMDQDGENVRMLTNTANLVL-TPRFSPNRQEVTYMSFEGNQP-RVYLLQLETGQR-EVVG 243 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF M +PRFS +G+R ++S+Q+D +IY++DL+S T RLT+T I+ S SY+PD Sbjct: 244 NFPGMTFSPRFSPDGQRVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSPSYAPDGR 303 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVFESDR G++QLYVM S+GS Q RIS E SY PVWSP+GDLIAFTK SG KF+IG Sbjct: 304 RIVFESDRGGRQQLYVMNSDGSGQTRIS-FGEGSYSTPVWSPRGDLIAFTKQSGGKFSIG 362 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VMK DGS ERLL + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Sbjct: 363 VMKPDGSGERLLTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTP 422 Query: 435 AYASDPQWVGFMD 447 ++ASDP W ++ Sbjct: 423 SFASDPAWSPLLE 435 >gi|227823308|ref|YP_002827280.1| translocation protein TolB [Sinorhizobium fredii NGR234] gi|227342309|gb|ACP26527.1| TolB protein precursor [Sinorhizobium fredii NGR234] Length = 457 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/430 (49%), Positives = 293/430 (68%), Gaps = 5/430 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 LV G F +A V++ N N P+ +A T F+ ELG K+S+VV+ DL+RS Sbjct: 33 LFTLVFAGVLFAAPANAVVEININKGNVEPLPVAITDFLQ-GELGQKISDVVAADLKRSG 91 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI NPD+ PRF+DW + AQ LVTGRV +EG RL+ EFRLWD + Sbjct: 92 LFAPIDKGAFIEKIANPDAAPRFEDWKVINAQALVTGRVTQEGDGRLKAEFRLWDTFAGQ 151 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V+ES K L +MD Sbjct: 152 QMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPKNARKRQLAIMD 211 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DG N R LT S D I+ PRFSPN+Q++ Y +++++ RVYL+ + + +GNF Sbjct: 212 QDGFNARALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVYLLQLETGQR-EVVGNFP 268 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT I+ S SYSPD ++IV Sbjct: 269 GMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTNAIDTSPSYSPDGARIV 328 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 FESDR GK+QLYVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVMK Sbjct: 329 FESDRGGKQQLYVMGADGSGQTRISFG-DGSYSTPVWSPRGDLIAFTKQSGGKFSIGVMK 387 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE I T +A Sbjct: 388 PDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQQIQTQGFA 447 Query: 438 SDPQWVGFMD 447 SDP W M+ Sbjct: 448 SDPAWSPLME 457 >gi|222086973|ref|YP_002545507.1| Tol-Pal system beta propeller repeat protein TolB [Agrobacterium radiobacter K84] gi|221724421|gb|ACM27577.1| Tol-Pal system beta propeller repeat protein TolB [Agrobacterium radiobacter K84] Length = 441 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/420 (49%), Positives = 294/420 (70%), Gaps = 5/420 (1%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 + + +A V++ N N P+ IA T +S D LG ++S V++ DLQRS +F I++ +F Sbjct: 27 YASPAYAVVEININKGNVQPMPIAITDLLSNDGLGAQISGVIAADLQRSGLFAPINKQAF 86 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KI+NPDS PRF DW S+ AQ LVTGRV ++G RLR EFRLWD Q+IG++F++ Sbjct: 87 IEKISNPDSTPRFPDWTSINAQALVTGRVTQDG-GRLRAEFRLWDTFGNSQMIGQQFYAQ 145 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P +WR++AH I+D IY+ ITGEKG F++R++FV+ES K L +MD+DGAN+R LT Sbjct: 146 PDNWRRVAHIIADAIYEKITGEKGYFDTRVVFVAESGPKTARKTQLAIMDQDGANVRMLT 205 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D +L PRFSP++Q+V Y ++ ++ RVYL+ + + + +GNF M +PRFS Sbjct: 206 NGSDLVL-TPRFSPSRQEVTYMSFANQQ-PRVYLLQLQTGQR-EIVGNFPGMTFSPRFSP 262 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +Q+ FESDR GK+Q Sbjct: 263 DGQRVIMSLQQEGNANIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGTQVAFESDRGGKQQ 322 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +YVM ++GS+Q+RIS + SY PVWSP+GDLIAFTK SG F+IGVMK DGS ERLL Sbjct: 323 IYVMNADGSNQRRISFG-DGSYSTPVWSPRGDLIAFTKQSGGSFSIGVMKTDGSGERLLT 381 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+GR ++F R+ G +G +LYSIDL G NE I TP +ASDP W ++ Sbjct: 382 TGFHNEGPTWAPNGRVIMFFREPAGSSGPQLYSIDLTGYNEQKIPTPGFASDPAWSPLLE 441 >gi|306841416|ref|ZP_07474118.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO2] gi|306844689|ref|ZP_07477274.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO1] gi|306274861|gb|EFM56631.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO1] gi|306288522|gb|EFM59874.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO2] Length = 443 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/426 (46%), Positives = 290/426 (68%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|86359053|ref|YP_470945.1| translocation protein TolB [Rhizobium etli CFN 42] gi|119371054|sp|Q2K4L8|TOLB_RHIEC RecName: Full=Protein tolB; Flags: Precursor gi|86283155|gb|ABC92218.1| protein transporter protein [Rhizobium etli CFN 42] Length = 436 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/440 (47%), Positives = 300/440 (68%), Gaps = 10/440 (2%) Query: 13 MKINLCLLLVLIGGF-----FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +K +L L+++ G F T +A V++ N N P+ IA T F+ D +G +VS+ Sbjct: 2 VKCSLIRALMVVAGLVGAAAFTTPANALVELNINKGNIQPLPIAVTDFLQGD-MGAQVSQ 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR E Sbjct: 61 VIAADLQRSGLFAPINKTAFIEKISNPDAAPRFEDWKVINAQALVTGRVTQEADGRLRAE 120 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 121 FRLWDTFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQ 180 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L +MD+DG N+R LT D +L PRFSP++Q+V Y ++ ++ RVYL+ Sbjct: 181 QRKRQLAIMDQDGFNVRTLTDGSDLVL-TPRFSPSRQEVTYMSFANQQP-RVYLLQLETG 238 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S Sbjct: 239 QR-EVVGNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSP 297 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK S Sbjct: 298 SYSPDGARVSFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQS 356 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G N Sbjct: 357 GGKFSIGVMKPDGSGERILTSGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYN 416 Query: 428 ETLINTPAYASDPQWVGFMD 447 E L+ TP+YASDP W ++ Sbjct: 417 EQLVKTPSYASDPAWSPLLE 436 >gi|114706798|ref|ZP_01439698.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506] gi|114537746|gb|EAU40870.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506] Length = 441 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/412 (48%), Positives = 280/412 (67%), Gaps = 4/412 (0%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 + A V + + N P+ IA T F S D +G ++S VV DL+RS +F I + +F Q Sbjct: 29 TAQARVTIDISGGNVEPLPIAITDFQSQDGIGAQISSVVEADLKRSGLFAPIDKAAFIQT 88 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 PD+ P FQDW + AQ LV GRV +E RLRVEFRLWD +Q+ G++F++ P Sbjct: 89 GLTPDTSPSFQDWTVINAQALVVGRVAREADGRLRVEFRLWDTFAGQQMDGQQFYADPND 148 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR+IAH I+D +Y+ ITGE G F+SR++FVSES L +MD+DGAN+RYLT + Sbjct: 149 WRRIAHIIADAVYKQITGENGYFDSRVVFVSESGNKANRVKRLAIMDQDGANLRYLTEGQ 208 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D +L PRFSPN+Q++ Y ++ + + RVYL+ + + +GNF M +PRFS +G+ Sbjct: 209 DLVL-TPRFSPNRQEITYMSFGNGEP-RVYLLQLETGQR-EIVGNFPGMTFSPRFSPDGQ 265 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + ++S+Q+D +IY++DL+S AT+RLTNT I+ S SYSPD +IVFESDR G++QLY Sbjct: 266 KVVMSLQQDGNANIYAMDLRSRATQRLTNTAAIDTSPSYSPDGGRIVFESDRGGRQQLYT 325 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS+Q+RIS + SY PVWSP+GDLIAFTK SG +F IGVM+ DGS ER+L Sbjct: 326 MNADGSNQQRISF-GDGSYSTPVWSPRGDLIAFTKQSGGQFQIGVMRPDGSGERILTTGY 384 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + + PTW+P+GR L+F R + G G +L+SIDL+GRNE + T +ASDP W Sbjct: 385 HNEGPTWAPNGRVLMFFRDQRGGGGPELWSIDLSGRNEQKVPTNGFASDPAW 436 >gi|62290569|ref|YP_222362.1| translocation protein TolB [Brucella abortus bv. 1 str. 9-941] gi|82700485|ref|YP_415059.1| translocation protein TolB [Brucella melitensis biovar Abortus 2308] gi|189024787|ref|YP_001935555.1| translocation protein TolB [Brucella abortus S19] gi|225628265|ref|ZP_03786299.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti str. Cudo] gi|225853152|ref|YP_002733385.1| translocation protein TolB [Brucella melitensis ATCC 23457] gi|237816074|ref|ZP_04595070.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus str. 2308 A] gi|254689865|ref|ZP_05153119.1| translocation protein TolB [Brucella abortus bv. 6 str. 870] gi|254694358|ref|ZP_05156186.1| translocation protein TolB [Brucella abortus bv. 3 str. Tulya] gi|254698016|ref|ZP_05159844.1| translocation protein TolB [Brucella abortus bv. 2 str. 86/8/59] gi|254700358|ref|ZP_05162186.1| translocation protein TolB [Brucella suis bv. 5 str. 513] gi|254730900|ref|ZP_05189478.1| translocation protein TolB [Brucella abortus bv. 4 str. 292] gi|256061734|ref|ZP_05451871.1| translocation protein TolB [Brucella neotomae 5K33] gi|256114265|ref|ZP_05455010.1| translocation protein TolB [Brucella melitensis bv. 3 str. Ether] gi|256160412|ref|ZP_05458101.1| translocation protein TolB [Brucella ceti M490/95/1] gi|256255618|ref|ZP_05461154.1| translocation protein TolB [Brucella ceti B1/94] gi|256258119|ref|ZP_05463655.1| translocation protein TolB [Brucella abortus bv. 9 str. C68] gi|256263356|ref|ZP_05465888.1| protein tolB [Brucella melitensis bv. 2 str. 63/9] gi|256370106|ref|YP_003107617.1| translocation protein TolB precursor [Brucella microti CCM 4915] gi|260167912|ref|ZP_05754723.1| translocation protein TolB [Brucella sp. F5/99] gi|260547187|ref|ZP_05822925.1| tolB [Brucella abortus NCTC 8038] gi|260755396|ref|ZP_05867744.1| protein tolB [Brucella abortus bv. 6 str. 870] gi|260758618|ref|ZP_05870966.1| protein tolB [Brucella abortus bv. 4 str. 292] gi|260762450|ref|ZP_05874787.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59] gi|260884412|ref|ZP_05896026.1| protein tolB [Brucella abortus bv. 9 str. C68] gi|261214667|ref|ZP_05928948.1| protein tolB [Brucella abortus bv. 3 str. Tulya] gi|261222821|ref|ZP_05937102.1| protein tolB [Brucella ceti B1/94] gi|261325738|ref|ZP_05964935.1| protein tolB [Brucella neotomae 5K33] gi|261750852|ref|ZP_05994561.1| protein tolB [Brucella suis bv. 5 str. 513] gi|261757350|ref|ZP_06001059.1| protein tolB [Brucella sp. F5/99] gi|265995569|ref|ZP_06108126.1| protein tolB [Brucella melitensis bv. 3 str. Ether] gi|265998780|ref|ZP_06111337.1| protein tolB [Brucella ceti M490/95/1] gi|294850948|ref|ZP_06791624.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp. NVSL 07-0026] gi|297248968|ref|ZP_06932676.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus bv. 5 str. B3196] gi|75496344|sp|Q57BI3|TOLB_BRUAB RecName: Full=Protein tolB; Flags: Precursor gi|119371037|sp|Q2YRD7|TOLB_BRUA2 RecName: Full=Protein tolB; Flags: Precursor gi|226705866|sp|B2S7D4|TOLB_BRUA1 RecName: Full=Protein tolB; Flags: Precursor gi|254764838|sp|C0REV9|TOLB_BRUMB RecName: Full=Protein tolB; Flags: Precursor gi|62196701|gb|AAX75001.1| TolB, tolB protein [Brucella abortus bv. 1 str. 9-941] gi|82616586|emb|CAJ11665.1| TolB, N-terminal [Brucella melitensis biovar Abortus 2308] gi|189020359|gb|ACD73081.1| TolB, N-terminal [Brucella abortus S19] gi|225616111|gb|EEH13159.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti str. Cudo] gi|225641517|gb|ACO01431.1| Tol-Pal system beta propeller repeat protein TolB [Brucella melitensis ATCC 23457] gi|237788737|gb|EEP62949.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus str. 2308 A] gi|256000269|gb|ACU48668.1| translocation protein TolB precursor [Brucella microti CCM 4915] gi|260095552|gb|EEW79430.1| tolB [Brucella abortus NCTC 8038] gi|260668936|gb|EEX55876.1| protein tolB [Brucella abortus bv. 4 str. 292] gi|260672876|gb|EEX59697.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59] gi|260675504|gb|EEX62325.1| protein tolB [Brucella abortus bv. 6 str. 870] gi|260873940|gb|EEX81009.1| protein tolB [Brucella abortus bv. 9 str. C68] gi|260916274|gb|EEX83135.1| protein tolB [Brucella abortus bv. 3 str. Tulya] gi|260921405|gb|EEX88058.1| protein tolB [Brucella ceti B1/94] gi|261301718|gb|EEY05215.1| protein tolB [Brucella neotomae 5K33] gi|261737334|gb|EEY25330.1| protein tolB [Brucella sp. F5/99] gi|261740605|gb|EEY28531.1| protein tolB [Brucella suis bv. 5 str. 513] gi|262553469|gb|EEZ09238.1| protein tolB [Brucella ceti M490/95/1] gi|262766853|gb|EEZ12471.1| protein tolB [Brucella melitensis bv. 3 str. Ether] gi|263093355|gb|EEZ17424.1| protein tolB [Brucella melitensis bv. 2 str. 63/9] gi|294821591|gb|EFG38587.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp. NVSL 07-0026] gi|297174101|gb|EFH33458.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus bv. 5 str. B3196] gi|326409710|gb|ADZ66775.1| TolB, N-terminal protein [Brucella melitensis M28] gi|326539417|gb|ADZ87632.1| Tol-Pal system beta propeller repeat protein TolB [Brucella melitensis M5-90] Length = 443 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/426 (46%), Positives = 290/426 (68%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|17986622|ref|NP_539256.1| translocation protein TolB [Brucella melitensis bv. 1 str. 16M] gi|256045307|ref|ZP_05448201.1| translocation protein TolB [Brucella melitensis bv. 1 str. Rev.1] gi|260565802|ref|ZP_05836285.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991732|ref|ZP_06104289.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1] gi|32699715|sp|Q93TG4|TOLB_BRUME RecName: Full=Protein tolB; Flags: Precursor gi|13898976|gb|AAK48918.1|AF358662_5 TolB protein [Brucella melitensis] gi|17982236|gb|AAL51520.1| tolb protein [Brucella melitensis bv. 1 str. 16M] gi|260151175|gb|EEW86270.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263002688|gb|EEZ15091.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1] Length = 443 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/426 (46%), Positives = 289/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDTGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|254719700|ref|ZP_05181511.1| translocation protein TolB [Brucella sp. 83/13] gi|265984714|ref|ZP_06097449.1| tolB [Brucella sp. 83/13] gi|306837841|ref|ZP_07470703.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF 2653] gi|264663306|gb|EEZ33567.1| tolB [Brucella sp. 83/13] gi|306407080|gb|EFM63297.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF 2653] Length = 443 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/426 (46%), Positives = 289/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+ +++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVSFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|148560006|ref|YP_001259549.1| translocation protein TolB [Brucella ovis ATCC 25840] gi|166229975|sp|A5VS52|TOLB_BRUO2 RecName: Full=Protein tolB; Flags: Precursor gi|148371263|gb|ABQ61242.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ovis ATCC 25840] Length = 443 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/426 (46%), Positives = 289/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNWQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|254708436|ref|ZP_05170264.1| translocation protein TolB [Brucella pinnipedialis M163/99/10] gi|254708711|ref|ZP_05170522.1| translocation protein TolB [Brucella pinnipedialis B2/94] gi|256030237|ref|ZP_05443851.1| translocation protein TolB [Brucella pinnipedialis M292/94/1] gi|261315936|ref|ZP_05955133.1| translocation protein TolB [Brucella pinnipedialis M163/99/10] gi|261316202|ref|ZP_05955399.1| tolB [Brucella pinnipedialis B2/94] gi|265987265|ref|ZP_06099822.1| protein tolB [Brucella pinnipedialis M292/94/1] gi|261295425|gb|EEX98921.1| tolB [Brucella pinnipedialis B2/94] gi|261304962|gb|EEY08459.1| translocation protein TolB [Brucella pinnipedialis M163/99/10] gi|264659462|gb|EEZ29723.1| protein tolB [Brucella pinnipedialis M292/94/1] Length = 443 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/426 (46%), Positives = 289/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ ++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSAIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|254714558|ref|ZP_05176369.1| translocation protein TolB [Brucella ceti M644/93/1] gi|254717455|ref|ZP_05179266.1| translocation protein TolB [Brucella ceti M13/05/1] gi|261219286|ref|ZP_05933567.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261322347|ref|ZP_05961544.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260924375|gb|EEX90943.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295037|gb|EEX98533.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 443 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/426 (46%), Positives = 290/426 (68%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EFRLWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFRLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSP+ SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPNGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|209550776|ref|YP_002282693.1| translocation protein TolB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226705889|sp|B5ZNL9|TOLB_RHILW RecName: Full=Protein tolB; Flags: Precursor gi|209536532|gb|ACI56467.1| Tol-Pal system beta propeller repeat protein TolB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 435 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/440 (47%), Positives = 296/440 (67%), Gaps = 11/440 (2%) Query: 13 MKINLCLLLVLIGGF-----FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +K +L L++I G F T +A V + N P+ IA T F +LG +VS+ Sbjct: 2 VKCSLIRALMVIAGLIGAAAFTTPANALVTLDLRKGNVQPMPIAVTDFQG--DLGAQVSQ 59 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR E Sbjct: 60 VIAADLQRSGLFAPINKTAFIEKISNPDAAPRFEDWKVINAQALVTGRVTKEADGRLRAE 119 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 120 FRLWDPFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQ 179 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L +MD+DG N+R LT D +L PRFSP++Q+V Y ++ ++ RVYL+ Sbjct: 180 QRKRQLAIMDQDGFNVRMLTDGSDLVL-TPRFSPSRQEVTYMSFANQQP-RVYLLQLETG 237 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLT+T I+ S Sbjct: 238 QR-EVVGNFPGMTFSPRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSP 296 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK + Sbjct: 297 SYSPDGARVSFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQA 355 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G N Sbjct: 356 GGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYN 415 Query: 428 ETLINTPAYASDPQWVGFMD 447 E L+ TP+Y SDP W M+ Sbjct: 416 EQLVKTPSYGSDPAWSPLME 435 >gi|23502555|ref|NP_698682.1| translocation protein TolB [Brucella suis 1330] gi|32699703|sp|Q8FZ07|TOLB_BRUSU RecName: Full=Protein tolB; Flags: Precursor gi|23348555|gb|AAN30597.1| tolB protein [Brucella suis 1330] Length = 443 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/426 (46%), Positives = 289/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EF LWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFHLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|254703475|ref|ZP_05165303.1| translocation protein TolB [Brucella suis bv. 3 str. 686] gi|261754105|ref|ZP_05997814.1| protein tolB [Brucella suis bv. 3 str. 686] gi|261743858|gb|EEY31784.1| protein tolB [Brucella suis bv. 3 str. 686] Length = 443 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/426 (46%), Positives = 288/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EF LWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFHLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT+ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSNQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|161619626|ref|YP_001593513.1| translocation protein TolB [Brucella canis ATCC 23365] gi|260568782|ref|ZP_05839250.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|189035979|sp|A9M7J5|TOLB_BRUC2 RecName: Full=Protein tolB; Flags: Precursor gi|161336437|gb|ABX62742.1| Tol-Pal system beta propeller repeat protein TolB [Brucella canis ATCC 23365] gi|260154166|gb|EEW89248.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 443 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/426 (46%), Positives = 289/426 (67%), Gaps = 7/426 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EF LWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFHLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 ++IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 RMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGVM Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVM 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPAW 438 >gi|327193466|gb|EGE60362.1| translocation protein TolB [Rhizobium etli CNPAF512] Length = 443 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/435 (47%), Positives = 295/435 (67%), Gaps = 10/435 (2%) Query: 13 MKINLCLLLVLIGGF-----FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +K +L L++I G F T +A V + N P+ IA T F+ D +G +VS+ Sbjct: 9 VKCSLIRALMVIAGLIGAAAFTTPANALVTLDLRKGNVQPMPIAVTDFLQGD-MGAQVSQ 67 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR E Sbjct: 68 VIAADLQRSGLFAPINKSAFIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRAE 127 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 128 FRLWDPFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQ 187 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L +MD+DG N+R LT D +L PRFSPN+Q+V Y ++ ++ RVYL+ Sbjct: 188 QRKRQLAIMDQDGFNVRMLTDGSDLVL-TPRFSPNRQEVTYMSFANQQP-RVYLLQLETG 245 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S Sbjct: 246 QR-EVVGNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSP 304 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK + Sbjct: 305 SYSPDGARVSFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQA 363 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G N Sbjct: 364 GGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYN 423 Query: 428 ETLINTPAYASDPQW 442 E L+ TP+Y SDP W Sbjct: 424 EQLVKTPSYGSDPAW 438 >gi|163845276|ref|YP_001622931.1| translocation protein TolB [Brucella suis ATCC 23445] gi|189035980|sp|A9WWH3|TOLB_BRUSI RecName: Full=Protein tolB; Flags: Precursor gi|163675999|gb|ABY40109.1| Tol-Pal system beta propeller repeat protein TolB [Brucella suis ATCC 23445] Length = 443 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/431 (45%), Positives = 290/431 (67%), Gaps = 7/431 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 C++ + P A V++ N P+ IA T F+S D+LG ++ V++ DL+RS Sbjct: 19 CMIAASLVCTMPA--RAVVEININKGVIEPLPIAITDFLSADQLGSNITSVIAADLERSG 76 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ EF LWD + Sbjct: 77 LFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAEFHLWDTFGGQ 136 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV ES + L +MD Sbjct: 137 QMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQKRVKRLAIMD 196 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL+ + + +GNF Sbjct: 197 QDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFEGGS-PKVYLLQLETGQR-ELVGNFP 253 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ I+ ASYSPD SQI Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK S +F+IGV Sbjct: 314 VFTSDRGGRPQLYVMGADGSNPRRISMG-DGSYSTPVWSPRGDLIAFTKQSQGQFSIGVT 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL GRNE I TP + Sbjct: 373 KTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQIQTPNF 432 Query: 437 ASDPQWVGFMD 447 ASDP W ++ Sbjct: 433 ASDPAWSPLLE 443 >gi|241206184|ref|YP_002977280.1| translocation protein TolB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860074|gb|ACS57741.1| Tol-Pal system beta propeller repeat protein TolB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 435 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/431 (47%), Positives = 290/431 (67%), Gaps = 6/431 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + ++ F T +A V + N P+ IA T F ++G +VS+V++ DLQRS Sbjct: 11 LVAVGLMTAAVFATPANALVTLDIRKGNVQPMPIAVTDFQG--DMGAQVSQVIAADLQRS 68 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR EFRLWD Sbjct: 69 GLFAPINKTAFIEKISNPDASPRFEDWKVINAQALVTGRVTKEADGRLRAEFRLWDPFAG 128 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +M Sbjct: 129 QQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIM 188 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DG N+R LT D +L PRFSP++Q+V Y ++ ++ RVYL+ + + +GNF Sbjct: 189 DQDGFNVRMLTDGSDLVL-TPRFSPSRQEVTYMSFANQQP-RVYLLQLETGQR-EVVGNF 245 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +PRFS +G++ ++S+Q+D +IY++DL+S T RLT+T I+ S SYSPD +++ Sbjct: 246 PGMTFSPRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARV 305 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK +G KF+IGVM Sbjct: 306 SFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQAGGKFSIGVM 364 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Y Sbjct: 365 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTPTY 424 Query: 437 ASDPQWVGFMD 447 SDP W M+ Sbjct: 425 GSDPAWSPLME 435 >gi|116253709|ref|YP_769547.1| translocation protein TolB [Rhizobium leguminosarum bv. viciae 3841] gi|119371055|sp|Q1MC72|TOLB_RHIL3 RecName: Full=Protein tolB; Flags: Precursor gi|115258357|emb|CAK09459.1| putative TolB family protein uptake component [Rhizobium leguminosarum bv. viciae 3841] Length = 435 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/431 (47%), Positives = 290/431 (67%), Gaps = 6/431 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + ++ F T +A V + N P+ IA T F ++G +VS+V++ DLQRS Sbjct: 11 LVAVGLMTAAVFATPANALVTLDIRKGNVQPMPIAVTDFQG--DIGAQVSQVIAADLQRS 68 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR EFRLWD Sbjct: 69 GLFAPINKTAFIEKISNPDAAPRFEDWKVINAQALVTGRVSKEADGRLRAEFRLWDPFAG 128 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +M Sbjct: 129 QQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIM 188 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DG N+R LT D +L PRFSP++Q+V Y ++ ++ RVYL+ + + +GNF Sbjct: 189 DQDGFNVRMLTDGSDLVL-TPRFSPSRQEVTYMSFANQQ-PRVYLLQLETGQR-EVVGNF 245 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +PRFS +G++ ++S+Q+D +IY++DL+S T RLT+T I+ S SYSPD +++ Sbjct: 246 PGMTFSPRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARV 305 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK +G KF+IGVM Sbjct: 306 SFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQAGGKFSIGVM 364 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Y Sbjct: 365 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTPTY 424 Query: 437 ASDPQWVGFMD 447 SDP W M+ Sbjct: 425 GSDPAWSPLME 435 >gi|190893275|ref|YP_001979817.1| protein transporter uptake component protein [Rhizobium etli CIAT 652] gi|226705888|sp|B3PYX5|TOLB_RHIE6 RecName: Full=Protein tolB; Flags: Precursor gi|190698554|gb|ACE92639.1| protein transporter, uptake component protein [Rhizobium etli CIAT 652] Length = 436 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/426 (47%), Positives = 289/426 (67%), Gaps = 5/426 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + ++ T +A V + N P+ IA T F+ D +G +VS+V++ DLQRS Sbjct: 11 LVAVGLMAAAVVATPANALVTLDIRKGNVQPMPIAITDFLQGD-MGAQVSQVIAADLQRS 69 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR EFRLWD Sbjct: 70 GLFAPINKSAFIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRAEFRLWDPFAG 129 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +M Sbjct: 130 QQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIM 189 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DG N+R LT D +L PRFSPN+Q+V Y ++ ++ RVYL+ + + +GNF Sbjct: 190 DQDGFNVRMLTDGSDLVL-TPRFSPNRQEVTYMSFANQQP-RVYLLQLETGQR-EVVGNF 246 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ Sbjct: 247 PGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARV 306 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK +G KF+IGVM Sbjct: 307 SFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQAGGKFSIGVM 365 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP+Y Sbjct: 366 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYNEQLVKTPSY 425 Query: 437 ASDPQW 442 SDP W Sbjct: 426 GSDPAW 431 >gi|218510315|ref|ZP_03508193.1| translocation protein TolB [Rhizobium etli Brasil 5] Length = 436 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/426 (47%), Positives = 289/426 (67%), Gaps = 5/426 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + ++ T +A V + N P+ IA T F+ D +G +VS+V++ DLQRS Sbjct: 11 LVAVGLMAAAVVATPANALVTLDIRKGNVQPMPIAVTDFLQGD-MGAQVSQVIAADLQRS 69 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR EFRLWD Sbjct: 70 GLFAPINKSAFIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRAEFRLWDPFAG 129 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +M Sbjct: 130 QQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIM 189 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DG N+R LT D +L PRFSPN+Q+V Y ++ ++ RVYL+ + + +GNF Sbjct: 190 DQDGFNVRMLTDGSDLVL-TPRFSPNRQEVTYMSFANQQP-RVYLLQLETGQR-EVVGNF 246 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ Sbjct: 247 PGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARV 306 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK +G KF+IGVM Sbjct: 307 SFESDRGGKPQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQAGGKFSIGVM 365 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP+Y Sbjct: 366 KPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYNEQLVKTPSY 425 Query: 437 ASDPQW 442 SDP W Sbjct: 426 GSDPAW 431 >gi|90418976|ref|ZP_01226887.1| tolB protein, periplasmic component, biopolymer transport system [Aurantimonas manganoxydans SI85-9A1] gi|90337056|gb|EAS50761.1| tolB protein, periplasmic component, biopolymer transport system [Aurantimonas manganoxydans SI85-9A1] Length = 436 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/407 (48%), Positives = 278/407 (68%), Gaps = 4/407 (0%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 V++ N P+ IA T F S D +G ++S+VV DL+RS +F I + +F Q D Sbjct: 29 VEIDVTQGNVEPLPIAITDFQSADGIGKQISDVVQADLKRSGLFAPIDRAAFIQSGLTTD 88 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + P F+DW + AQ LV GRV E RLRVEFRLWD +Q+ G++F+++P +WR++A Sbjct: 89 TTPSFKDWTVINAQALVVGRVSPEADGRLRVEFRLWDTFAGQQLDGQQFYTNPENWRRVA 148 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D IY+ +TGEKG F++RI+FV+ES L +MD+DGAN+RYLT + +L Sbjct: 149 HIIADAIYERLTGEKGYFDTRIVFVAESGTKDKRVKRLAIMDQDGANLRYLTDGSELVL- 207 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PRFSP++Q+V Y ++ + + RVYL+ + + +GNF M +PRFS +G++ ++S Sbjct: 208 TPRFSPSRQEVTYMSFGNGE-PRVYLLQLETGQR-EIVGNFPGMTFSPRFSPDGQKVIMS 265 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +Q++ +IY++DL+S AT RLT+T I+ S SYSPD +IVFESDR G++QLYVM ++G Sbjct: 266 LQQEGNANIYAMDLRSRATTRLTSTTAIDTSPSYSPDGRRIVFESDRGGRQQLYVMGADG 325 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 S Q+RIS + SY PVWSP+GDLIAFTK SG +F IGVM+ DGS ER+L + + P Sbjct: 326 SGQQRISF-GDGSYSTPVWSPRGDLIAFTKQSGGQFQIGVMRPDGSGERILTSGFHNEGP 384 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 TW+P+GR ++F R + G G +LYSIDL G NE I TP+YASDP W Sbjct: 385 TWAPNGRVVMFFRDQRGGGGPQLYSIDLTGYNEQKIPTPSYASDPAW 431 >gi|218662997|ref|ZP_03518927.1| translocation protein TolB [Rhizobium etli IE4771] Length = 437 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/421 (47%), Positives = 286/421 (67%), Gaps = 6/421 (1%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS-QDS 86 F T +A V++ N N P+ IA T F+ +G +VS+V++ DLQRS +F S + Sbjct: 22 FATPANALVEININKGNVQPLPIAVTDFLQ-GNMGAQVSQVIAADLQRSGLFCARSTRQP 80 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR EFRLWD +Q+ G++F++ Sbjct: 81 FIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRAEFRLWDTFAGQQMTGQQFYT 140 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +MD+DG N+R L Sbjct: 141 QPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIMDQDGFNVRML 200 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T D +L PRFSP++Q+V Y ++ ++ RVYL+ + + +GNF M +PRFS Sbjct: 201 TDGSDLVL-TPRFSPSRQEVTYMSFANQQ-PRVYLLQLETGQR-EVVGNFPGMTFSPRFS 257 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ FESDR GK Sbjct: 258 PDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARVSFESDRGGKP 317 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVMK DGS ER+L Sbjct: 318 QIYVMDADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQSGGKFSIGVMKPDGSGERIL 376 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Y SDP W + Sbjct: 377 TTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTPTYGSDPAWSPLL 436 Query: 447 D 447 + Sbjct: 437 E 437 >gi|13473330|ref|NP_104897.1| translocation protein TolB [Mesorhizobium loti MAFF303099] gi|32699716|sp|Q98F84|TOLB_RHILO RecName: Full=Protein tolB; Flags: Precursor gi|14024079|dbj|BAB50683.1| TolB protein precursor [Mesorhizobium loti MAFF303099] Length = 436 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/429 (45%), Positives = 283/429 (65%), Gaps = 7/429 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + + + + + P A V++ N N P+ IA T F D LG ++S++V+ DL+ Sbjct: 9 LTIAAMALGMTAVIPMPAWALVELNVNKGNVEPLPIAITDFQGGDALGAQISQIVTADLK 68 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F I + +F +KI+NPD+ PRF DW + AQ LVTG V KE R+R ++RLWD Sbjct: 69 RSGLFAPIDKSAFIEKISNPDAAPRFDDWKVINAQALVTGSVSKEADGRIRAQYRLWDTF 128 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q+ G++FF++ A+ R++AH I+D IY+ +TGEKG F++R++F+ ES K L Sbjct: 129 AGQQMSGEQFFANDANQRRVAHIIADAIYERLTGEKGYFDTRVVFIDESGAKNARKKRLA 188 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DGAN+RYL+ R I+ PRFSPN+Q++ Y +Y+ RVYL+ + + +G Sbjct: 189 IMDQDGANVRYLSDGR-SIVLTPRFSPNRQEITYMSYESGQ-PRVYLLQIETGQR-ELVG 245 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF M APRFS +G++ ++S+ +D+ +I+++DL+S +T RLTN+ I+ S SYSPD Sbjct: 246 NFPGMTFAPRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDG 305 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 S++VF SDR G+ Q+YVM ++GS Q RIS + Y PVWSP+GDLIAFTK +G +F I Sbjct: 306 SKVVFTSDRGGRAQIYVMGADGSGQTRISF-GDGVYSTPVWSPRGDLIAFTKQTGGEFQI 364 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 GVMK DGS ER+L + PTW+P+GR L+F R +G G KL S+DL GRNE I T Sbjct: 365 GVMKTDGSGERILSSGFQQEGPTWAPNGRVLMFFRDSNG--GPKLVSVDLTGRNEQPIPT 422 Query: 434 PAYASDPQW 442 +ASDP W Sbjct: 423 ANFASDPAW 431 >gi|319781027|ref|YP_004140503.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166915|gb|ADV10453.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 436 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/410 (47%), Positives = 276/410 (67%), Gaps = 7/410 (1%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A V++ N N P+ IA T F D LG ++S++V+ DL+RS +F I + +F +KITN Sbjct: 28 ALVELNVNKGNVEPLPIAITDFQGGDALGAQISQIVTADLKRSGLFAPIDKSAFIEKITN 87 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 PD+ PRF DW + AQ LVTG V KE R+R ++RLWD +Q+ G++FF++ A+ R+ Sbjct: 88 PDAAPRFDDWKVINAQALVTGSVSKEADGRIRAQYRLWDTFAGQQMAGEQFFANDANQRR 147 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 +AH I+D IY+ +TGEKG F++R++F+ ES K L +MD+DGAN+RYL+ R I Sbjct: 148 VAHIIADAIYERLTGEKGYFDTRVVFIDESGAKNARKKRLAIMDQDGANVRYLSDGR-SI 206 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PRFSPN+Q++ Y +Y+ RVYL+ + + +GNF M APRFS +G++ + Sbjct: 207 VLTPRFSPNRQEITYMSYESGQP-RVYLLQIETGQR-ELVGNFPGMTFAPRFSPDGQKVI 264 Query: 274 ISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S+ +D+ +I+++DL+S +T RLTN+ I+ S SYSPD S++VF SDR G+ Q+YVM Sbjct: 265 MSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMG 324 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 ++GS Q RIS + Y PVWSP+GDLIAFTK +G +F IGVMK DGS ER+L Sbjct: 325 ADGSGQTRISF-GDGVYSTPVWSPRGDLIAFTKQTGGEFQIGVMKTDGSGERILSSGFQQ 383 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PTW+P+GR L+F R G G KL S+DL GRNE I T +ASDP W Sbjct: 384 EGPTWAPNGRVLMFFRDSAG--GPKLVSVDLTGRNEQSIPTANFASDPAW 431 >gi|260467065|ref|ZP_05813245.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium opportunistum WSM2075] gi|259029174|gb|EEW30470.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium opportunistum WSM2075] Length = 436 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/415 (46%), Positives = 279/415 (67%), Gaps = 7/415 (1%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A V++ N N P+ IA T F D LG ++S++++ DL+RS +F I + +F +KI+N Sbjct: 28 ALVELNVNKGNVEPLPIAITDFQGGDALGAQISQIITADLKRSGLFAPIDKSAFIEKISN 87 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 PD+ PRF DW + AQ LVTG V KE R+R ++RLWD +Q+ G++FF++ A+ R+ Sbjct: 88 PDAAPRFDDWKVINAQALVTGSVSKEADGRIRAQYRLWDTFAGQQMSGEQFFANDANQRR 147 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 +AH I+D IY+ +TGEKG F++R++F+ ES K L +MD+DGAN+RYL+ R I Sbjct: 148 VAHIIADAIYERLTGEKGYFDTRVVFIDESGAKNARKKRLAIMDQDGANVRYLSDGR-SI 206 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PRFSPN+Q++ Y +Y+ RVYL+ + + +GNF M APRFS +G++ + Sbjct: 207 VLTPRFSPNRQEITYMSYESGQP-RVYLLQIETGQR-ELVGNFPGMTFAPRFSPDGQKVI 264 Query: 274 ISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S+ +D+ +I+++DL+S +T RLTN+ I+ S SYSPD S++VF SDR G+ Q+YVM Sbjct: 265 MSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMG 324 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 ++GS Q RIS + Y PVWSP+GDLIAFTK +G +F IGVMK DGS ER+L Sbjct: 325 ADGSGQTRISF-GDGVYSTPVWSPRGDLIAFTKQTGGEFQIGVMKTDGSGERILSSGFQQ 383 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + PTW+P+GR L+F R +G G KL S+DL GRNE I T +ASDP W ++ Sbjct: 384 EGPTWAPNGRVLMFFRDANG--GPKLISVDLTGRNEQPIPTSNFASDPAWSPLLE 436 >gi|90426222|ref|YP_534592.1| translocation protein TolB [Rhodopseudomonas palustris BisB18] gi|90108236|gb|ABD90273.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 450 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/432 (44%), Positives = 281/432 (65%), Gaps = 15/432 (3%) Query: 22 VLIGG-------FFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVS 70 L+GG P A ++ N +P+ IA FV+ +E+G V++V++ Sbjct: 18 ALLGGAGSAAALLLPGGAQAQTRLQITEGNVAPMPIAIPNFVAGTPADNEVGLGVAQVIT 77 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +L+RS +F I Q +F ++I+N D+ P+FQ W ++ AQ LVTGR+ K+G RL+ EFRL Sbjct: 78 NNLKRSGLFAPIDQAAFIERISNIDTPPQFQSWKTINAQALVTGRMTKQGDGRLKAEFRL 137 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 WDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++F+ E+ Sbjct: 138 WDVAAGQQLTGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDETGSKERRV 197 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L +MD+DGAN+RYLT D +L PRFSP+ Q++ Y + D RVYL + + Sbjct: 198 KRLALMDQDGANVRYLTRGADLVL-TPRFSPSTQEITYMEFGQGDP-RVYLFNIETGQR- 254 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + +GNF M +PRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S SY+ Sbjct: 255 EIVGNFPGMSFSPRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYA 314 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S+I FESDR GK Q+YVM + G +RIS E SY PVWSP+GD IAFTK G + Sbjct: 315 PDGSKICFESDRGGKPQIYVMPAGGGGAQRISFG-EGSYSTPVWSPRGDYIAFTKQGGGQ 373 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F+IG+MK DGS ERLL + + PT++P+GR L+F R G+ G L+++D++GRNE Sbjct: 374 FSIGIMKPDGSGERLLTSGYHNEGPTFAPNGRVLMFFRDPGGNGGPSLFTVDISGRNEQK 433 Query: 431 INTPAYASDPQW 442 + TP +ASDP W Sbjct: 434 VPTPGFASDPAW 445 >gi|118574595|sp|Q20X63|TOLB_RHOPB RecName: Full=Protein tolB; Flags: Precursor Length = 447 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/432 (44%), Positives = 281/432 (65%), Gaps = 15/432 (3%) Query: 22 VLIGG-------FFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVS 70 L+GG P A ++ N +P+ IA FV+ +E+G V++V++ Sbjct: 15 ALLGGAGSAAALLLPGGAQAQTRLQITEGNVAPMPIAIPNFVAGTPADNEVGLGVAQVIT 74 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +L+RS +F I Q +F ++I+N D+ P+FQ W ++ AQ LVTGR+ K+G RL+ EFRL Sbjct: 75 NNLKRSGLFAPIDQAAFIERISNIDTPPQFQSWKTINAQALVTGRMTKQGDGRLKAEFRL 134 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 WDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++F+ E+ Sbjct: 135 WDVAAGQQLTGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDETGSKERRV 194 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L +MD+DGAN+RYLT D +L PRFSP+ Q++ Y + D RVYL + + Sbjct: 195 KRLALMDQDGANVRYLTRGADLVL-TPRFSPSTQEITYMEFGQGDP-RVYLFNIETGQR- 251 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + +GNF M +PRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S SY+ Sbjct: 252 EIVGNFPGMSFSPRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYA 311 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S+I FESDR GK Q+YVM + G +RIS E SY PVWSP+GD IAFTK G + Sbjct: 312 PDGSKICFESDRGGKPQIYVMPAGGGGAQRISFG-EGSYSTPVWSPRGDYIAFTKQGGGQ 370 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F+IG+MK DGS ERLL + + PT++P+GR L+F R G+ G L+++D++GRNE Sbjct: 371 FSIGIMKPDGSGERLLTSGYHNEGPTFAPNGRVLMFFRDPGGNGGPSLFTVDISGRNEQK 430 Query: 431 INTPAYASDPQW 442 + TP +ASDP W Sbjct: 431 VPTPGFASDPAW 442 >gi|91978608|ref|YP_571267.1| translocation protein TolB [Rhodopseudomonas palustris BisB5] gi|91685064|gb|ABE41366.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB5] Length = 449 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/411 (46%), Positives = 275/411 (66%), Gaps = 8/411 (1%) Query: 36 VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N +P+ IA FV S +E+GG VS+V++ +L+RS +F I Q ++ +KI Sbjct: 38 ARVQITEGNVAPLPIAIPNFVAGTPSDNEVGGGVSQVITNNLKRSGLFAPIDQAAYLEKI 97 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 TN D P+F+ W S+ AQ LVTGR+ ++ RL+ EFRLWDV +Q+ G+++F+SP W Sbjct: 98 TNIDVPPQFKSWTSINAQALVTGRMTRQPDGRLKAEFRLWDVATGQQLAGQQYFTSPEYW 157 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT D Sbjct: 158 RRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPADRRVKRLALMDQDGANVRYLTRGSD 217 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L PRFSP+ Q++ Y + D +VYL + + + +GNF M APRFS +G+R Sbjct: 218 LVL-TPRFSPSTQEITYMEFGQGDP-KVYLFNIETGQR-EIVGNFPGMSFAPRFSPDGQR 274 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ +++ +DL+S T RLT+T I+ S SYSPD+++I FESDR GK Q+Y+M Sbjct: 275 IIMSLQQGGNSNLFVMDLRSKTTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQIYIM 334 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 335 PAGGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGFH 393 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G+ G LY++D++GRNE + TP YASDP W Sbjct: 394 NEGPTFAPNGRVLMFFRDPGGNAGPSLYTVDVSGRNELRVPTPGYASDPAW 444 >gi|27382263|ref|NP_773792.1| translocation protein TolB [Bradyrhizobium japonicum USDA 110] gi|27355434|dbj|BAC52417.1| tolB protein [Bradyrhizobium japonicum USDA 110] Length = 491 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/441 (44%), Positives = 284/441 (64%), Gaps = 20/441 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFV----KVATNSANYSPVSIAFTKFV----SIDELGGK 64 M + L +L GG HAF ++ + + PV IA T F+ S ++G Sbjct: 50 MTLTGSGLAMLGGG------HAFAQGQPRLRIDPTEFQPVPIAITNFLPGSPSDGDVGNG 103 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V++V++ +L+RS +F I Q +F ++I+N D P+FQ+W ++ AQ LVTGR+ ++ RL Sbjct: 104 VTQVITNNLKRSGLFAPIDQAAFIERISNIDVAPQFQNWKTINAQALVTGRMTRQPDGRL 163 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV E+ Sbjct: 164 KAEFRLWDVVSGQQLAGQQYFTSPEYWRRIAHIISDQIYERMTGEKGYFDSRVVFVDETG 223 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L +MD+DGAN+RYLT D +L PRFSPN Q++ Y + D +VYL + Sbjct: 224 PKERRVKRLAMMDQDGANVRYLTRGSDLVL-TPRFSPNSQEITYMEFGQGDP-KVYLFNI 281 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + +GNF M APRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ Sbjct: 282 ETGQR-EIVGNFPGMTFAPRFSPDGQRVIMSLQQGGNSNLFVMDLRSRSTTRLTDTPAID 340 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDPVWSPQGDLI 361 S SYSPD ++I FESDR G+ Q+YVM + G +RIS D A+Y PVWSP+GD I Sbjct: 341 TSPSYSPDGTRICFESDRGGRSQIYVMAAGGGAAQRISFSKDDTNATYSTPVWSPRGDYI 400 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 AFT+ G +F+IGVMK DGS ERLL + + PT+SP+GR L+F R G G LYS+ Sbjct: 401 AFTRQGGGQFSIGVMKPDGSGERLLTSGFHNEGPTFSPNGRVLMFFRDPGGSGGPSLYSV 460 Query: 422 DLNGRNETLINTPAYASDPQW 442 D++GRNE + TP +ASDP W Sbjct: 461 DISGRNELKVPTPGFASDPAW 481 >gi|86748935|ref|YP_485431.1| translocation protein TolB [Rhodopseudomonas palustris HaA2] gi|118574594|sp|Q2IZ40|TOLB_RHOP2 RecName: Full=Protein tolB; Flags: Precursor gi|86571963|gb|ABD06520.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] Length = 449 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/411 (45%), Positives = 277/411 (67%), Gaps = 8/411 (1%) Query: 36 VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N +P+ IA FV S +E+GG V++V++ +L+RS +F I Q ++ +KI Sbjct: 38 ARVQITEGNVAPLPIAIPNFVAGTPSDNEVGGGVAQVITNNLKRSGLFAPIDQAAYVEKI 97 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 TN D P+F+ W S+ AQ LVTGR+ ++ RL+ EFRLWDV +Q+ G+++F+SP W Sbjct: 98 TNIDVPPQFKSWTSINAQALVTGRMTRQSDGRLKAEFRLWDVATGQQLAGQQYFTSPEYW 157 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT D Sbjct: 158 RRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPADRRVKRLALMDQDGANVRYLTRGSD 217 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L PRFSP+ Q++ Y + D +VYL + + + +GNF M APRFS +G+R Sbjct: 218 LVL-TPRFSPSTQEITYMEFGQGD-PKVYLFNIETGQR-EIVGNFPGMSFAPRFSPDGQR 274 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ +++ +DL+S +T RLT+T I+ S SYSPD+++I FESDR GK Q+YVM Sbjct: 275 IIMSLQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQIYVM 334 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 335 PASGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGFH 393 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G+ G L+++D++GRNE + TP YASDP W Sbjct: 394 NEGPTFAPNGRVLMFFRDPGGNAGPSLFTVDVSGRNELRVPTPGYASDPAW 444 >gi|32699699|sp|Q89ED5|TOLB_BRAJA RecName: Full=Protein tolB; Flags: Precursor Length = 454 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/441 (44%), Positives = 284/441 (64%), Gaps = 20/441 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFV----KVATNSANYSPVSIAFTKFV----SIDELGGK 64 M + L +L GG HAF ++ + + PV IA T F+ S ++G Sbjct: 13 MTLTGSGLAMLGGG------HAFAQGQPRLRIDPTEFQPVPIAITNFLPGSPSDGDVGNG 66 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V++V++ +L+RS +F I Q +F ++I+N D P+FQ+W ++ AQ LVTGR+ ++ RL Sbjct: 67 VTQVITNNLKRSGLFAPIDQAAFIERISNIDVAPQFQNWKTINAQALVTGRMTRQPDGRL 126 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV E+ Sbjct: 127 KAEFRLWDVVSGQQLAGQQYFTSPEYWRRIAHIISDQIYERMTGEKGYFDSRVVFVDETG 186 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L +MD+DGAN+RYLT D +L PRFSPN Q++ Y + D +VYL + Sbjct: 187 PKERRVKRLAMMDQDGANVRYLTRGSDLVL-TPRFSPNSQEITYMEFGQGDP-KVYLFNI 244 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + +GNF M APRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ Sbjct: 245 ETGQR-EIVGNFPGMTFAPRFSPDGQRVIMSLQQGGNSNLFVMDLRSRSTTRLTDTPAID 303 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDPVWSPQGDLI 361 S SYSPD ++I FESDR G+ Q+YVM + G +RIS D A+Y PVWSP+GD I Sbjct: 304 TSPSYSPDGTRICFESDRGGRSQIYVMAAGGGAAQRISFSKDDTNATYSTPVWSPRGDYI 363 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 AFT+ G +F+IGVMK DGS ERLL + + PT+SP+GR L+F R G G LYS+ Sbjct: 364 AFTRQGGGQFSIGVMKPDGSGERLLTSGFHNEGPTFSPNGRVLMFFRDPGGSGGPSLYSV 423 Query: 422 DLNGRNETLINTPAYASDPQW 442 D++GRNE + TP +ASDP W Sbjct: 424 DISGRNELKVPTPGFASDPAW 444 >gi|39934195|ref|NP_946471.1| translocation protein TolB [Rhodopseudomonas palustris CGA009] gi|192289721|ref|YP_001990326.1| translocation protein TolB [Rhodopseudomonas palustris TIE-1] gi|67461966|sp|Q6NAR1|TOLB_RHOPA RecName: Full=Protein tolB; Flags: Precursor gi|39648043|emb|CAE26563.1| putative tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Rhodopseudomonas palustris CGA009] gi|192283470|gb|ACE99850.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas palustris TIE-1] Length = 444 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/411 (46%), Positives = 274/411 (66%), Gaps = 8/411 (1%) Query: 36 VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N +P+ IA FV S E+G VS+V++ +L+RS +F I Q ++ +KI Sbjct: 33 ARVQITEGNVAPLPIAIPNFVAGTPSDAEVGTGVSQVITNNLKRSGLFAPIDQAAYLEKI 92 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 TN D P+F+ W S+ AQ LVTGR+ ++G RL+ EFRLWDV +Q+ G+++F+SP W Sbjct: 93 TNIDVPPQFKSWASINAQALVTGRMTRQGDGRLKAEFRLWDVATGQQLAGQQYFTSPEYW 152 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT D Sbjct: 153 RRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPADRRVKRLALMDQDGANVRYLTRGSD 212 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L PRFSP Q++ Y + + RVYL + + + +GNF M APRFS +G+R Sbjct: 213 LVL-TPRFSPTNQEITYMEFGQGEP-RVYLFNVETGQR-EIVGNFPGMSFAPRFSPDGQR 269 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ +++ +DL+S AT RLT+T I+ S SY+PD S+I FESDR GK Q+Y+M Sbjct: 270 IIMSLQQGGNSNLFVMDLRSKATTRLTDTPAIDTSPSYAPDGSRICFESDRGGKPQIYIM 329 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 330 PASGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGFH 388 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G+ G L+++D++GRNE + TP YASDP W Sbjct: 389 NEGPTFAPNGRVLMFFRDPGGNAGPSLFTVDVSGRNELRVPTPGYASDPAW 439 >gi|110635500|ref|YP_675708.1| translocation protein TolB [Mesorhizobium sp. BNC1] gi|118574584|sp|Q11DI2|TOLB_MESSB RecName: Full=Protein tolB; Flags: Precursor gi|110286484|gb|ABG64543.1| TolB-like protein [Chelativorans sp. BNC1] Length = 439 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/411 (46%), Positives = 272/411 (66%), Gaps = 4/411 (0%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 A V++ N PV IA T F+S G ++S V++ DL+RS +F I + +F +KI+ Sbjct: 27 RALVEIDVNRGVVEPVPIAITDFLSAGGRGAEISAVIAADLKRSGLFAPIDRGAFIEKIS 86 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 NPD PRF+DW + AQ +VTGRV +E RL+ EFRLWD +Q++G++FF+ PA WR Sbjct: 87 NPDVAPRFEDWKVINAQAIVTGRVTEEPGGRLKAEFRLWDTFAGQQLVGEQFFAKPADWR 146 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 ++AH I+D IY+ TGEKG F+SRI+FV ES L +MD+DGAN R LT R Sbjct: 147 RVAHIIADTIYEQFTGEKGYFDSRIVFVDESGSKENRVKRLAIMDQDGANYRALTDGR-S 205 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ +P FSP +Q++ Y +++ +VYL+ + NF +M A RF+ G + Sbjct: 206 IVLKPSFSPQRQEITYVSFEGGQ-PQVYLLQIETGQRELVGNNFPTMSFASRFNPVGDKI 264 Query: 273 LIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S ++ D +IY++DL++ T RLT+T I+ S SYSPD +++VF SDR G+ Q+YVM Sbjct: 265 IMSLLRTDGNSNIYTMDLKTRTTARLTDTNAIDTSPSYSPDGNKVVFTSDRGGRAQIYVM 324 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++GS+ +RIS + +Y +PVWSP+GDLIAFTK SG +F IG+M+ DGS ER+L Sbjct: 325 NADGSNPQRISF-GDGTYSEPVWSPRGDLIAFTKQSGGQFQIGIMRTDGSGERILSTGFQ 383 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++ PTWSP+GR ++F R+ G G KLYSIDL GRNE LI TP +ASDP W Sbjct: 384 IEGPTWSPNGRVIMFFRQDAGAAGPKLYSIDLTGRNEQLIPTPNFASDPAW 434 >gi|319406262|emb|CBI79899.1| TolB protein [Bartonella sp. AR 15-3] Length = 440 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/428 (44%), Positives = 283/428 (66%), Gaps = 5/428 (1%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 +L L+V + F +S +A +K A+++P+ IA F+S D LG K++ V++ DL+R Sbjct: 10 SLFFLIVYLWFFGFSSSYAQLKGTIAKADFNPIPIAVADFLSHDSLGIKIAAVIAADLER 69 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F + + SF + NPD P F DW + AQ L+TG+V +E RL+VEFRLWDV Sbjct: 70 SGLFFPLQKSSFPEISPNPDKQPNFSDWKKINAQGLITGKVYRETDGRLKVEFRLWDVVG 129 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++QI G++F+++ WR++AH I+D+IY +TGEKG F++RI+F+ E+ L + Sbjct: 130 KRQIKGQRFYTATERWRRVAHMIADEIYSKMTGEKGYFDTRIVFIDETGPHNARIKRLAM 189 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN+ YL+ ++++ PRFSP +Q++ Y YD VYL I + + +G Sbjct: 190 MDQDGANLIYLSEG-NELVLTPRFSPKRQEITYMAYDKNKTPHVYLQQMEIGQR-ELLGT 247 Query: 256 FRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F +M +APRFS NG++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD + Sbjct: 248 FDNMTIAPRFSPNGQKVIMSLLQNDGSANLYTMDLRTRQMTRLTATKAIDTSASYSPDGT 307 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR GK Q+Y M +GSD +RIS + E SY P+WSP+GD IAFTK +F+IG Sbjct: 308 KIVFSSDRSGKPQIYTMNVDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTKQFQGQFSIG 366 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM DG ER+L + + PTW+P+GR L+F R+ G+ GSK+Y+ID+ GRNE L+ TP Sbjct: 367 VMHPDGKGERILTTGFHNEGPTWAPNGRVLMFFRQNPGE-GSKIYTIDITGRNERLLRTP 425 Query: 435 AYASDPQW 442 ASDP W Sbjct: 426 NDASDPAW 433 >gi|85714380|ref|ZP_01045368.1| TolB [Nitrobacter sp. Nb-311A] gi|85698827|gb|EAQ36696.1| TolB [Nitrobacter sp. Nb-311A] Length = 441 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/411 (45%), Positives = 275/411 (66%), Gaps = 8/411 (1%) Query: 36 VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N +P+ IA FV S +E+G V++V++ +L+RS +F I Q ++ +KI Sbjct: 30 ARVQITEGNVAPLPIAIPNFVGGSASDNEVGAGVAKVITNNLKRSGLFAPIDQAAYIEKI 89 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 TN D P+F +W ++ AQ LVTGR+ ++G RL+ EFRLWDV +Q+ G+++F+SP W Sbjct: 90 TNIDVPPQFANWKTINAQALVTGRMTRQGDGRLKAEFRLWDVATGQQLAGQQYFTSPEYW 149 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+IAH ISD IY+ +TGEKG F+SR++FV ES S L +MD+DGAN+RYLT D Sbjct: 150 RRIAHIISDQIYERLTGEKGYFDSRVVFVDESGPSQHRVKRLALMDQDGANVRYLTRGAD 209 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 ++ PRFSP+ Q++ Y + D RVYL + + + +GNF M APRF+ +G+R Sbjct: 210 -LVITPRFSPSTQEITYMEFGQGD-PRVYLFNIETGQR-EIVGNFPGMSFAPRFAPDGQR 266 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ +++ +DL+S +T RLT+T I+ S SYSPD ++I FESDR GK Q+YVM Sbjct: 267 IIMSLQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYSPDGARICFESDRGGKPQIYVM 326 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++G +RIS E SY PVWSP+GD IAFTK G +F+IG++K DGS ER+L + Sbjct: 327 GASGGGAQRISFG-EGSYSTPVWSPRGDYIAFTKQGGGQFSIGIIKPDGSGERILTSGFH 385 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G G LY+ID++GRNE + TP +ASDP W Sbjct: 386 NEGPTFAPNGRVLMFFRDPGGAGGPSLYTIDVSGRNELKVPTPGFASDPAW 436 >gi|158422148|ref|YP_001523440.1| twin-arginine translocation pathway signal precursor [Azorhizobium caulinodans ORS 571] gi|158329037|dbj|BAF86522.1| twin-arginine translocation pathway signal precursor [Azorhizobium caulinodans ORS 571] Length = 450 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/412 (45%), Positives = 271/412 (65%), Gaps = 4/412 (0%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 + A +K+ S P+ IA T F+ + G +S V++ DL+RS +F I +F ++ Sbjct: 38 AAQAALKLEITSGTPQPIPIAVTDFIGEGDQGRAISGVITADLKRSGLFAPIDPKAFVEQ 97 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 I+NPD PRFQDW + AQ LVTGRV ++G RL+ EFRLWDV +Q++G+++F+ P + Sbjct: 98 ISNPDLAPRFQDWRVINAQGLVTGRVTRQGDGRLKAEFRLWDVFAGQQLMGQQYFTQPEN 157 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+ YLT Sbjct: 158 WRRVAHIIADAIYERLTGEKGYFDTRIVFVDESGAKDRRVKRLAIMDQDGANVTYLT-RG 216 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D ++ PRFSP Q++ Y +Y + RV+L++ + + +GNF M APRFS +G+ Sbjct: 217 DALVLTPRFSPTSQEITYMSYAQGE-PRVFLLNIETGQR-EIVGNFPGMSFAPRFSPDGQ 274 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++S+Q+ +I+ +DL+S AT RLT+T I+ + YSPD QI FESDR G Q+YV Sbjct: 275 RVIMSLQQGGNANIFVMDLRSKATTRLTDTPAIDTAPCYSPDGRQICFESDRGGSSQIYV 334 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS Q+RIS A Y PVWSP+GD+IAFT+ + KFAIGVM+ DG ER+L E Sbjct: 335 MNADGSGQRRISFGN-ARYNTPVWSPRGDVIAFTRQAEGKFAIGVMRPDGQGERVLTEGY 393 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + + PT++P+GR ++F R G G L++ID+ G NE + TP+Y SDP W Sbjct: 394 HNEGPTFAPNGRVIMFFRDPPGGGGPNLFTIDVTGYNEQRVPTPSYGSDPAW 445 >gi|209886402|ref|YP_002290259.1| Tol-Pal system beta propeller repeat protein TolB [Oligotropha carboxidovorans OM5] gi|209874598|gb|ACI94394.1| Tol-Pal system beta propeller repeat protein TolB [Oligotropha carboxidovorans OM5] Length = 449 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/411 (45%), Positives = 273/411 (66%), Gaps = 10/411 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N N+ P+ IA FV+ +E+ ++ V++ +L+RS +F I Q ++ ++I Sbjct: 40 ARVRINEGNFQPIPIAIPNFVAGGQADNEVSTGIASVITNNLRRSGLFAPIDQAAYIERI 99 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 +N D P+FQ+W + AQ LVTGR ++G RL+ EFRLWDV +Q+ G+++F+SP SW Sbjct: 100 SNIDVAPQFQNWRQINAQALVTGRATRQGDGRLKAEFRLWDVPAAQQLTGQQYFTSPESW 159 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R++AH ISD IY+ +TGEKG F+SR++FV E+ L +MD+DGAN+RYLT D Sbjct: 160 RRVAHIISDQIYERLTGEKGYFDSRVVFVDETGPKDRRVKRLAMMDQDGANVRYLTRGAD 219 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L PRFSP Q++ Y + D RVYL + + + +GNF M APRFS +G+R Sbjct: 220 LVL-TPRFSPTTQEITYMEFGGGD-PRVYLFNVETGQR-EIVGNFPGMSFAPRFSPDGQR 276 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ ++Y +DL+S +T RLT+T I+ S SY+PDSS+I FESDR GK Q+YVM Sbjct: 277 IIMSLQQGGNSNLYVMDLRSKSTTRLTDTPAIDTSPSYAPDSSRICFESDRGGKPQIYVM 336 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +NG +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 337 GANGGAAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGYH 395 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G G LY++D++GRNE + TP +ASDP W Sbjct: 396 NEGPTFAPNGRVLMFFRDLGG--GPNLYTVDISGRNELKVPTPGFASDPAW 444 >gi|75676901|ref|YP_319322.1| translocation protein TolB [Nitrobacter winogradskyi Nb-255] gi|118574589|sp|Q3SP21|TOLB_NITWN RecName: Full=Protein tolB; Flags: Precursor gi|74421771|gb|ABA05970.1| TolB [Nitrobacter winogradskyi Nb-255] Length = 450 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/411 (45%), Positives = 274/411 (66%), Gaps = 8/411 (1%) Query: 36 VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N +P+ IA FV S +E+G V++V++ +L+RS +F I Q ++ +KI Sbjct: 39 ARVQITEGNVAPLPIAIPNFVGGTPSDNEVGAGVAKVITNNLKRSGLFAPIDQAAYIEKI 98 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 TN D P+F +W ++ AQ LVTGR+ ++G RL+ EFRLWDV +Q+ G+++F+SP W Sbjct: 99 TNIDVPPQFANWKTINAQALVTGRMTRQGDGRLKAEFRLWDVATGQQLAGQQYFTSPEYW 158 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+IAH ISD IY+ +TGEKG F+SR++FV ES S L +MD+DGAN+RYLT D Sbjct: 159 RRIAHIISDQIYERLTGEKGYFDSRVVFVDESGSSQRRVKRLALMDQDGANVRYLTRGAD 218 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 ++ PRFSP+ Q+V Y + D RVYL + + + +GNF M +PRF+ +G+R Sbjct: 219 -LVITPRFSPSTQEVTYMEFGQGD-PRVYLFNIETGQR-EIVGNFPGMSFSPRFAPDGQR 275 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ +++ +DL+S +T RLT+T I+ S SYSPD ++I FESDR GK Q+YVM Sbjct: 276 IIMSLQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYSPDGARICFESDRGGKPQIYVM 335 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G +RIS E SY PVWSP+GD IAFTK G +F+IG++K DGS ER+L + Sbjct: 336 GATGGGAQRISFG-EGSYSTPVWSPRGDYIAFTKQGGGQFSIGIIKPDGSGERILTSGFH 394 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G G LY+ID++GRNE + TP +ASDP W Sbjct: 395 NEGPTFAPNGRVLMFFRDPGGGGGPSLYTIDVSGRNELKVPTPGFASDPAW 445 >gi|92118972|ref|YP_578701.1| translocation protein TolB [Nitrobacter hamburgensis X14] gi|118574587|sp|Q1QHQ6|TOLB_NITHX RecName: Full=Protein tolB; Flags: Precursor gi|91801866|gb|ABE64241.1| TolB-like protein [Nitrobacter hamburgensis X14] Length = 450 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/443 (43%), Positives = 285/443 (64%), Gaps = 15/443 (3%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFV----SID 59 F M + VL+GG AF +V + N +P+ IA FV S Sbjct: 12 FHPSRRQMISGMASAAVLLGGG-----RAFGQARVQIDQGNVAPLPIAIPNFVAGSPSDS 66 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 E+G V++V++ +L+RS +F I Q ++ +KITN D P+F +W ++ AQ LVTGR+ ++ Sbjct: 67 EVGAGVAKVITNNLKRSGLFAPIDQAAYIEKITNIDVPPQFANWKTINAQALVTGRMTRQ 126 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G RL+ EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++F Sbjct: 127 GDGRLKAEFRLWDVATGQQLAGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVF 186 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V ES + L +MD+DGAN+RYLT D ++ PRFSP+ Q++ Y + D RV Sbjct: 187 VDESGAAQHRIKRLALMDQDGANVRYLTRGAD-LVITPRFSPSTQEITYMEFGQGD-PRV 244 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL + + + +GNF M +PRF+ +G+R ++S+Q+ +++ +DL+S +T RLT+ Sbjct: 245 YLFNIETGQR-EIVGNFPGMSFSPRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTTRLTD 303 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 T I+ S SYSPD +I FESDR G+ Q+YVM + G +RIS E SY PVWSP+GD Sbjct: 304 TPAIDTSPSYSPDGGRICFESDRGGRPQIYVMGATGGAAQRISFG-EGSYSTPVWSPRGD 362 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 IAFTK G +F+IG++K DGS ER+L + + PT++P+GR L+F R G++G LY Sbjct: 363 YIAFTKQGGGQFSIGIIKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGNSGPSLY 422 Query: 420 SIDLNGRNETLINTPAYASDPQW 442 +ID++GRNE + TP +ASDP W Sbjct: 423 TIDVSGRNELKVPTPGFASDPAW 445 >gi|316932664|ref|YP_004107646.1| Tol-Pal system beta propeller repeat-containing protein TolB [Rhodopseudomonas palustris DX-1] gi|315600378|gb|ADU42913.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas palustris DX-1] Length = 444 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/411 (45%), Positives = 272/411 (66%), Gaps = 8/411 (1%) Query: 36 VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +V N +P+ IA FV S E+G VS+V++ +L+RS +F I Q ++ +KI Sbjct: 33 ARVQITEGNVAPLPIAIPNFVAGTPSDGEVGVGVSQVITNNLKRSGLFAPIDQAAYLEKI 92 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 TN D P+F+ W S+ AQ LVTGR+ ++G RL+ EFRLWDV +Q+ G+++F+SP W Sbjct: 93 TNIDVPPQFKSWASINAQALVTGRMTRQGDGRLKAEFRLWDVATGQQLAGQQYFTSPEYW 152 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT D Sbjct: 153 RRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPAERRVKRLALMDQDGANVRYLTRGSD 212 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L PRFSP Q++ Y + + RVYL + + + +GNF M APRFS +G++ Sbjct: 213 LVL-TPRFSPTTQEITYMEFGQGEP-RVYLFNVETGQR-EIVGNFPGMSFAPRFSPDGQK 269 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ +++ +DL+S AT RLT+T I+ S SY+PD S+I FESDR G+ Q+Y+M Sbjct: 270 IIMSLQQGGNSNLFVMDLRSKATTRLTDTPAIDTSPSYAPDGSRICFESDRGGRPQIYIM 329 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 330 PAGGGQAQRISFG-DGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGFH 388 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR L+F R G G L+++D++GRNE + TP YASDP W Sbjct: 389 NEGPTFAPNGRVLMFFRDPGGKAGPSLFTVDVSGRNELRVPTPGYASDPAW 439 >gi|298292994|ref|YP_003694933.1| Tol-Pal system beta propeller repeat protein TolB [Starkeya novella DSM 506] gi|296929505|gb|ADH90314.1| Tol-Pal system beta propeller repeat protein TolB [Starkeya novella DSM 506] Length = 452 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/416 (44%), Positives = 275/416 (66%), Gaps = 11/416 (2%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSID-----ELGGKVSEVVSKDLQRSDVFNLISQDSF 87 A +K+ P+ IA T FV E G V++++S DL+RS +F I +F Sbjct: 37 QAVLKLDVTQGTVQPLPIAITDFVGGGSPQDVEAGKGVTQIISADLRRSGLFAPIDPAAF 96 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KI+NPD+ PRFQDW + AQ LVTGR+ ++ R++ EFRLWDV +Q+IG+++F+ Sbjct: 97 VEKISNPDASPRFQDWRVINAQALVTGRITRQSDGRVKAEFRLWDVFAGQQLIGQQYFTQ 156 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P +WR++AH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+ YLT Sbjct: 157 PENWRRVAHIIADAIYERLTGEKGYFDTRIVFVDESGPKEKRVKRLAIMDQDGANVTYLT 216 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFS 266 D ++ PRFSP Q++ Y +Y + RVYL++ I+ + +GNF +M +PRF+ Sbjct: 217 -RGDDLVLTPRFSPTSQEITYMSYGRGE-PRVYLLN--IENGQREVVGNFPNMSFSPRFA 272 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+R ++S+Q+ +I+ +DL+S AT RLT+T I+ + YSPD SQI FESDR G Sbjct: 273 PDGQRVILSLQQGADSNIFVMDLRSKATTRLTDTPAIDTAPCYSPDGSQICFESDRGGGS 332 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+YVM +GS+Q RIS E Y PVWSP+GD+IAFTK + +FAIG+M+ DG ER+L Sbjct: 333 QIYVMNPDGSNQHRISF-GEGRYSTPVWSPRGDVIAFTKQAQGRFAIGLMRPDGQGERIL 391 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 E + + PT++P+GR ++F R G+ G +LY++D+ G NE + TP+YASDP W Sbjct: 392 TEGYHNEGPTFAPNGRVIMFFRDLGGNGGPQLYTVDVTGYNEQRVPTPSYASDPAW 447 >gi|319407739|emb|CBI81386.1| TolB protein [Bartonella sp. 1-1C] Length = 440 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/414 (45%), Positives = 276/414 (66%), Gaps = 5/414 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +S +A +K A+++P+ IA FVS D LG K++ VV+ DL+RS +F + + SF + Sbjct: 24 SSSYAQLKGTIAKADFNPIPIAVADFVSHDSLGIKIAAVVAADLERSGLFFPLQKSSFPE 83 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 NPD P F DW + AQ LVTG++ +E RL+V+FRLWDV ++QI G++F+++ Sbjct: 84 TTPNPDQQPNFPDWKKINAQGLVTGKIYRETDGRLKVDFRLWDVAGKRQIKGQRFYTATE 143 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH I+D+IY +TGEKG F++RI+F+ E+ L +MD+DGAN+ YL+ Sbjct: 144 RWRRVAHMIADEIYSQMTGEKGYFDTRIVFIDETGPQNARIKRLAIMDQDGANLIYLSDG 203 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +L PRFSP +Q++ Y Y VYL + + + IG+F +M +APRFS NG Sbjct: 204 SELVL-TPRFSPKRQEITYMAYGKNKTPHVYLQQMEVGQR-ELIGSFDNMTIAPRFSPNG 261 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 ++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD ++IVF SDR GK+Q+ Sbjct: 262 QKVIMSLLQNDGSANLYTMDLRTRKMTRLTATQAIDTSASYSPDGTKIVFASDRNGKQQI 321 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y M +GSD +RIS + E SY P+WSP+GD IAFTK +F+IGVM DG ER+L Sbjct: 322 YTMNIDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTKQFQGQFSIGVMHPDGKGERILTT 380 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + + PTW+P+GR L+F R+ G+ GSK+Y+ID+ GRNE L+ TP ASDP W Sbjct: 381 GFHNEGPTWAPNGRVLMFFRQNPGE-GSKIYTIDITGRNERLLPTPNDASDPAW 433 >gi|304393324|ref|ZP_07375252.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp. R2A130] gi|303294331|gb|EFL88703.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp. R2A130] Length = 444 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/418 (45%), Positives = 274/418 (65%), Gaps = 5/418 (1%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 + A V++ N P+ IA T F+ LG +++ VV+ DL+RS +F I +F + Sbjct: 31 TAQARVEIDVTRGNVEPLPIAITSFLGEGGLGAEIAGVVTSDLKRSGLFAPIDPAAFIEN 90 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 I++ ++ P FQ W ++ AQ LVTGRV+ EG R R EFRLWD +Q++G ++ ++P + Sbjct: 91 ISDTNAQPNFQSWTAIKAQALVTGRVVSEGGGRFRTEFRLWDTYGGEQLVGSQYSTNPQN 150 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R++ H I+D IY+++TGEKG F++R+++V+ES L +MD+DG N R LT Sbjct: 151 ARRVGHIIADAIYKALTGEKGYFDTRVVYVAESGPKNKRVKQLAIMDQDGFNNRMLTNGS 210 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D +L PRFSP++Q++ Y ++ + RVYL+ + + +GNF SM +PRFS +G+ Sbjct: 211 DLVL-TPRFSPSRQEITYMSFAGGEP-RVYLLQIETGQR-EVVGNFPSMTFSPRFSPDGQ 267 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++S+Q+D +IYS+DL+S +T RLTNT I+ S S+SPD +IVFESDR G++QLYV Sbjct: 268 RIVMSLQQDGNANIYSMDLRSRSTTRLTNTPAIDTSPSFSPDGRRIVFESDRGGRQQLYV 327 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS RIS SY PVWSP+GDLIAFTK SG F IGVM+ DG ER+L E Sbjct: 328 MGADGSSPTRISFGT-GSYSTPVWSPRGDLIAFTKRSGGNFLIGVMRPDGKGERILTEGY 386 Query: 391 NLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+GR L+F R+ G G KLYSIDL GRNE + T +ASDP W +D Sbjct: 387 HNEGPTWAPNGRLLMFFRETPGAGGGPKLYSIDLTGRNEQQVPTKTFASDPAWSPLLD 444 >gi|319404775|emb|CBI78376.1| TolB protein [Bartonella rochalimae ATCC BAA-1498] Length = 440 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/419 (44%), Positives = 277/419 (66%), Gaps = 5/419 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +S +A +K A+++P+ IA FVS D LG K++ VV+ DL+RS +F + + SF + Sbjct: 24 SSSYAQLKGTIAKADFNPIPIAVADFVSHDSLGIKIAAVVAADLERSGLFFPLQKSSFPE 83 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 NPD P F DW + AQ LVTG++ +E RL+V+FRLWDV ++QI G++F+++ Sbjct: 84 ITPNPDQQPNFPDWKKINAQGLVTGKIYRETDGRLKVDFRLWDVAGKRQIKGQRFYTATE 143 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH I+D+IY +TGEKG F++RI+F+ E+ L +MD+DGAN+ YL+ Sbjct: 144 RWRRVAHMIADEIYSQMTGEKGYFDTRIVFIDETGPQNARIKRLAIMDQDGANLIYLSDG 203 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + IL PRFSP +Q++ Y Y VYL + + + IG+F +M +APRFS NG Sbjct: 204 SELIL-TPRFSPKRQEITYMAYGKNKTPHVYLQQMEVGQR-ELIGSFDNMTIAPRFSPNG 261 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 ++ ++S +Q + + ++Y++DL++ RLT T I+ SASYSPD ++IVF SDR GK Q+ Sbjct: 262 QKVIMSLLQNNGSANLYTMDLRTRKMTRLTATQAIDTSASYSPDGTKIVFSSDRNGKPQI 321 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y M +GSD +RIS + E SY P+WSP+GD IAFTK +F+IGVM DG ER+L Sbjct: 322 YTMNVDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTKQFQGQFSIGVMHPDGKGERILTT 380 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+GR L+F R+ G+ GSK+Y+ID+ GRNE L+ TP ASDP W ++ Sbjct: 381 GFHNEGPTWAPNGRVLMFFRQNPGE-GSKIYTIDITGRNERLLPTPNDASDPAWSPLLN 438 >gi|319409339|emb|CBI82983.1| TolB protein [Bartonella schoenbuchensis R1] Length = 444 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/418 (45%), Positives = 282/418 (67%), Gaps = 5/418 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +S HA +K +SA+++P+S+A T F+S D +G K++ VV+ DL+RS +F+L+++ SF + Sbjct: 24 SSAHAQLKGTISSADFNPISVAITDFISNDSIGLKIAAVVAADLERSGLFSLLNKASFPE 83 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 I NPDS PRF +W Q LVTG V +E RLRV+FRLWDV +QI G++F+++P Sbjct: 84 TIINPDSQPRFLEWQHTNIQGLVTGHVNREASGRLRVDFRLWDVFGNRQIKGRRFYTTPE 143 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH ++D+IY +TGE+G F++RI+FV E+ L +MD+DGAN+ YL+ Sbjct: 144 HWRRVAHMVADEIYSKMTGERGYFDTRIVFVDETGPRDARVKRLAIMDQDGANLTYLSDG 203 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +L PRFSPN+Q++ Y YD VYL + + + IG F +M +APRFS +G Sbjct: 204 SELVL-TPRFSPNRQEITYMAYDKNKTPHVYLQQIEMGQR-ELIGTFDNMTIAPRFSPDG 261 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 ++ ++S +Q + + ++Y++DL++ RLT T I+ SASYSPD QIVF SDR+G Q+ Sbjct: 262 QKVIMSLLQNNGSANLYTMDLRTRTMTRLTTTKAIDTSASYSPDGKQIVFSSDRDGTPQI 321 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 YVM ++G++ RIS + E +Y PVWSP+GD IAFTK +F+IGVM DG ERLL Sbjct: 322 YVMNADGTNPYRISFN-EGNYSTPVWSPRGDYIAFTKQFQGQFSIGVMHPDGQGERLLTT 380 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PTW+P+GR L+F R+ G G+K+Y+ID+ GRNE + TP ASDP W + Sbjct: 381 GFHNEGPTWAPNGRVLMFFRQNAG-VGTKIYTIDITGRNERQLPTPHDASDPAWSALL 437 >gi|319899382|ref|YP_004159479.1| TolB protein [Bartonella clarridgeiae 73] gi|319403350|emb|CBI76909.1| TolB protein [Bartonella clarridgeiae 73] Length = 440 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/432 (43%), Positives = 280/432 (64%), Gaps = 10/432 (2%) Query: 15 INLCLLLVL---IGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 I+ C ++ GF +S +A +K +A+++P+ IA FVS D LG K++ VV+ Sbjct: 8 ISSCFFFIVYLWFCGF--SSAYAQLKGTIANADFNPIPIAIADFVSHDSLGVKIAAVVAA 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+RS +F + + SF + NPD P F DW + Q LVTG+V +E RL+V+FRLW Sbjct: 66 DLERSGLFLPLQKSSFPEISPNPDKQPNFSDWKKINTQGLVTGKVYREADGRLKVDFRLW 125 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV +QI G++F+++ WR++AH ISD+IY +TGEKG F++RI+F+ E+ Sbjct: 126 DVLGNRQIKGQRFYTATERWRRVAHMISDEIYSKMTGEKGYFDTRIVFIDETGPHDARIK 185 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +MD+DGAN+ YL+ + +L PRFSP +Q++ Y Y VYL + + + Sbjct: 186 RLTIMDQDGANLTYLSDGSELVL-TPRFSPKRQEITYMAYGKNKTPHVYLQQMEVGQR-E 243 Query: 252 RIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 IG F +M +APRFS +G++ ++S +Q + + ++Y++DL++ RLT T I+ SASYS Sbjct: 244 LIGTFDNMTIAPRFSPDGQKVIMSLLQNNGSANLYTMDLRTRKMTRLTTTKAIDTSASYS 303 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD ++IVF SDR+GK Q+Y M +GSD +RIS + E SY P+WSP+GD IAFTK + Sbjct: 304 PDGNKIVFSSDRDGKPQIYTMNVDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTKQFQGQ 362 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F+IGVM DG ER+L + + PTW+P+GR L+F RK G G+K+Y+ID+ GRNE L Sbjct: 363 FSIGVMYPDGKGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-AGAKIYTIDITGRNERL 421 Query: 431 INTPAYASDPQW 442 + TP ASDP W Sbjct: 422 LPTPNDASDPAW 433 >gi|115526695|ref|YP_783606.1| translocation protein TolB [Rhodopseudomonas palustris BisA53] gi|115520642|gb|ABJ08626.1| transport system periplasmic component [Rhodopseudomonas palustris BisA53] Length = 450 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/418 (44%), Positives = 273/418 (65%), Gaps = 8/418 (1%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQ 84 P + A ++ +P+ IA FV+ E+G V++V++ +L+RS +F I Q Sbjct: 32 PHAALAQTRLQITEGTVAPMPIALPNFVAGTPADAEVGIGVAQVITNNLKRSGLFAPIDQ 91 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 +F +KI+N D P+F W ++ AQ LVTGR+ ++ RL+ EFRLWDV +Q+ G+++ Sbjct: 92 AAFIEKISNIDVPPQFPSWKTINAQALVTGRMTRQPDGRLKAEFRLWDVAAGQQLTGQQY 151 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 F+SP WR+IAH ISD IY+ +TGEKG F+SR++F+ E+ L +MD+DGAN+R Sbjct: 152 FTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDETGAKERRVKRLALMDQDGANVR 211 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT D +L PRFSP Q++ Y + D RVYL + + + +GNF M +PR Sbjct: 212 YLTRGSDLVL-TPRFSPTTQEITYMEFGQGDP-RVYLFNIETGQR-EIVGNFPGMSFSPR 268 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S SY+PD S+I FESDR G Sbjct: 269 FSPDGQRIIMSMQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYAPDGSRICFESDRGG 328 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 K+Q+YVM + G +RIS E +Y PVWSP+GD IAFTK G +F+IG+MK DG+ ER Sbjct: 329 KQQIYVMPAGGGGAQRISFG-EGNYSTPVWSPRGDYIAFTKQGGGQFSIGIMKPDGTGER 387 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 LL + + PT++P+GR L+F R G+ G LY++D++GRNE + TP +ASDP W Sbjct: 388 LLTSGYHNEGPTFAPNGRVLMFFRDPGGNGGPSLYTVDISGRNEQKVPTPGFASDPAW 445 >gi|154252569|ref|YP_001413393.1| beta-propeller repeat-containing to-pal system protein TolB [Parvibaculum lavamentivorans DS-1] gi|189035985|sp|A7HV03|TOLB_PARL1 RecName: Full=Protein tolB; Flags: Precursor gi|154156519|gb|ABS63736.1| Tol-Pal system beta propeller repeat TolB [Parvibaculum lavamentivorans DS-1] Length = 446 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/435 (43%), Positives = 278/435 (63%), Gaps = 8/435 (1%) Query: 9 EELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + L K+ L L++ + F A +++ N P+ IA T FV +G +S V Sbjct: 14 QSLMSKLILPLVMAVA---FALPARAALQIDITQGNVDPLPIAITDFVGEGSVGADMSAV 70 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S +L+RS +F + + SF +K+++ + PRF DW + +Q LVTG+ E RLRVEF Sbjct: 71 ISNNLERSGLFRPLPKASFIEKVSDINVQPRFGDWRVINSQALVTGQTRMEADGRLRVEF 130 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV +Q+ G +FF++P +WR++AH ISD IY+ +TGE G F++RI++VSE+ Sbjct: 131 RLWDVLGEQQLTGLQFFTTPDNWRRVAHLISDAIYKRLTGEDGYFDTRIVYVSETGPKNA 190 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DG N R LT ++++ PRFSPN Q++ Y Y + RVY++D + Sbjct: 191 RVKRLTIMDQDGHNPRMLTRG-NELVLTPRFSPNSQEITYLAYRNNQ-PRVYVLDIETGQ 248 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +G F M APRFS +G+R ++S+Q+ DIY++DL+S RLTNT I+ + S Sbjct: 249 Q-EVVGEFPGMTFAPRFSPDGQRIIMSLQRGGNSDIYTMDLRSRQVVRLTNTAAIDTAPS 307 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 YSPD QI FESDR G +Q+YVM ++GS+Q+RIS + SY PVWSP+GDLIAFTK +G Sbjct: 308 YSPDGRQITFESDRGGSQQIYVMDASGSNQRRISF-GQGSYATPVWSPRGDLIAFTKITG 366 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRN 427 +F IGVM+ DG+ ER+L + + + PTW+P+GR L+F R+ G G L+S+D+ G N Sbjct: 367 GRFVIGVMRPDGTGERVLTDGFHNEGPTWAPNGRVLMFFRETRGAQGGPSLWSVDVTGYN 426 Query: 428 ETLINTPAYASDPQW 442 E TP +ASDP W Sbjct: 427 ERPSPTPTFASDPAW 441 >gi|254501514|ref|ZP_05113665.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia alexandrii DFL-11] gi|222437585|gb|EEE44264.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia alexandrii DFL-11] Length = 449 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 187/432 (43%), Positives = 273/432 (63%), Gaps = 8/432 (1%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI---DELGGKVSEVVSKDLQRS 76 + L P + A V++ N P+ IA +F + +L ++ V++ DL+RS Sbjct: 22 FVFLFAALTPLPVAALVEIDITQGNVEPLPIALPQFSAEGGDSKLAADMTAVIAADLKRS 81 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +FN + SF QK + +S PRF DW ++ AQ LVTG V K+ RLR EFRLWDV Sbjct: 82 GLFNPLDPASFIQKNMSVNSTPRFGDWRTISAQALVTGTVTKQADGRLRAEFRLWDVFAA 141 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q++G++F+++P +WR++AH I+D +Y+ ITGEKG F++RI+FV E+ L +M Sbjct: 142 EQMLGQQFYTTPENWRRLAHIIADAVYERITGEKGYFDTRIVFVDETGPKDKRVKRLALM 201 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN+RYLT D ++ PRFSP Q++ Y +Y D VYL++ + + +GNF Sbjct: 202 DQDGANVRYLT-RGDDLVLTPRFSPTSQEITYMSYAGADP-SVYLLNIETGQR-EIVGNF 258 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M APRFS +G+ ++S+Q+ +I+ +DL+S T RLTN+ I+ S S+SPDS +I Sbjct: 259 PGMTFAPRFSPDGQSVVMSLQQGSNANIFKMDLRSRQTTRLTNSAAIDTSPSFSPDSQRI 318 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VFESDR G +QLYVM ++G +RIS Y PVWSP+GDLIAFTK +F IGVM Sbjct: 319 VFESDRGGSQQLYVMSASGGQAQRISFGP-GRYSTPVWSPRGDLIAFTKQHQGRFMIGVM 377 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPA 435 + DG ER+L E + + P WSP+GR L+F R G + G +++++DL G NE + TPA Sbjct: 378 RPDGKGERVLTEGYHNEGPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRLETPA 437 Query: 436 YASDPQWVGFMD 447 +ASDP W +D Sbjct: 438 FASDPSWSPLID 449 >gi|307944545|ref|ZP_07659885.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp. TrichSKD4] gi|307772294|gb|EFO31515.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp. TrichSKD4] Length = 449 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 189/436 (43%), Positives = 271/436 (62%), Gaps = 10/436 (2%) Query: 18 CLLLVLIGGFFPT--SIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVVSKD 72 CL+LV G A +++ N P+ IA F + +L + V++ D Sbjct: 18 CLMLVAFAGLLTALGPARALIELDITQGNIEPLPIALPDFAAAGSDPKLASDMIGVITAD 77 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+RS +F + SF QK + ++ PRF DW ++GAQ LV+G V K+ RLR EFRLWD Sbjct: 78 LKRSGLFKPLDPASFIQKNMDVNTTPRFGDWRTIGAQALVSGTVSKQADGRLRAEFRLWD 137 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V +Q++G++FF++ +WR++AH I+D IY+ +TGEKG F++RI+++ E+ Sbjct: 138 VFASEQMLGQQFFTTEENWRRLAHIIADAIYERLTGEKGYFDTRIVYIDETGPKDKRVKR 197 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD+DGAN+RYLT D ++ PRFSP Q++ Y +Y D VYL++ + + Sbjct: 198 LAIMDQDGANVRYLTKG-DDLVLTPRFSPTSQEITYMSYSGADP-SVYLLNIETGQR-EI 254 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 +GNF M APRFS +G+ ++S+Q+ +I+ +DL+S T RLTNT I+ S SYSPD Sbjct: 255 VGNFPGMTFAPRFSPDGQSVVMSLQQGGNANIFKMDLRSRRTTRLTNTAAIDTSPSYSPD 314 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S+IVFESDR G +QLYVM N + RIS Y PVWSP+GDLIAFTK +F Sbjct: 315 GSRIVFESDRGGTQQLYVMSGNDGNPLRISFGP-GRYSTPVWSPRGDLIAFTKMHQGRFM 373 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLI 431 IGVMK DG ER+L E + + P WSP+GR L+F R G + G +++++DL G NE + Sbjct: 374 IGVMKPDGKGERILTEGYHNEGPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRV 433 Query: 432 NTPAYASDPQWVGFMD 447 NTPA+ASDP W +D Sbjct: 434 NTPAFASDPSWSPLID 449 >gi|299134178|ref|ZP_07027371.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp. 1NLS2] gi|298590925|gb|EFI51127.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp. 1NLS2] Length = 447 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 186/411 (45%), Positives = 271/411 (65%), Gaps = 10/411 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVS----EVVSKDLQRSDVFNLISQDSFKQKI 91 V+V + N+ P+ IA FV+ + G+VS V++ +L+RS +F I Q ++ ++I Sbjct: 38 VRVQVDQGNFQPIPIAIPNFVAGGQGDGEVSAGIASVITNNLKRSGLFAPIDQAAYIERI 97 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 +N D P+F W + AQ LVTGR ++ RL+ EFRLWDV +Q+ G+++F+SP SW Sbjct: 98 SNIDVPPQFPSWRQINAQALVTGRATRQSDGRLKAEFRLWDVPAAQQLTGQQYFTSPESW 157 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R++AH ISD IY+ +TGEKG F+SR++FV ES + L +MD+DGAN+RYLT D Sbjct: 158 RRVAHIISDQIYERLTGEKGYFDSRVVFVDESGPAQRRVKRLTIMDQDGANVRYLTRGAD 217 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L PRFSP+ Q++ Y + D RVYL + + + +GNF M APRFS +G+R Sbjct: 218 LVL-TPRFSPSTQEITYMEFGGGD-PRVYLFNVETGQR-EIVGNFPGMSFAPRFSPDGQR 274 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S+Q+ ++Y +DL+S +T RLT+T I+ S SY+PD S+I FESDR GK Q+YVM Sbjct: 275 IIMSLQQGGNSNLYVMDLRSKSTTRLTDTPAIDTSPSYAPDGSRICFESDRGGKPQIYVM 334 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 335 AAGGGAAQRIS-FGDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGFH 393 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT++P+GR ++F R D G L+++D++GRNE + TP +ASDP W Sbjct: 394 NEGPTFAPNGRVVMFFR--DLGAGPHLFTVDISGRNELQVPTPGFASDPAW 442 >gi|328542544|ref|YP_004302653.1| translocation protein TolB [polymorphum gilvum SL003B-26A1] gi|326412290|gb|ADZ69353.1| translocation protein TolB [Polymorphum gilvum SL003B-26A1] Length = 449 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 184/418 (44%), Positives = 272/418 (65%), Gaps = 8/418 (1%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 A +++ P+ IA F +L +++ V++ DL+RS +F + SF +K Sbjct: 36 ALIEIDITQGQIEPMPIALPDFSPEGGDAQLARELTSVIAADLRRSGLFRPLDPASFIEK 95 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 + ++ PRF DW ++GAQ LVTG V ++ RLR EFRLWDV +Q++G++FF++P + Sbjct: 96 NLSVNTAPRFGDWRTIGAQALVTGSVTRQADGRLRAEFRLWDVFASEQMLGQQFFTTPEN 155 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+RYLT Sbjct: 156 WRRLAHIIADAIYERLTGEKGYFDTRIVFVDESGPKSKRVKRLAIMDQDGANMRYLT-RG 214 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D+++ PRFSP Q++ Y ++ D V+L++ + + +GNF M APRFS +G+ Sbjct: 215 DELVLTPRFSPTSQEITYMSFGSGDP-SVFLLNIETGQR-EIVGNFPGMTFAPRFSPDGQ 272 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++S+Q+ +I+ +DL+S AT RLTNT I+ S SYSPD QIVFESDR G +QLYV Sbjct: 273 RVIMSLQQGGNANIFVMDLRSRATTRLTNTPAIDTSPSYSPDGRQIVFESDRGGSQQLYV 332 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS+ +RIS Y PVWSP+GDLIAFTK +F IGVM+ DG ER+L E Sbjct: 333 MNADGSNAQRISFGP-GRYSTPVWSPRGDLIAFTKQHQGRFMIGVMRPDGKGERILTEGY 391 Query: 391 NLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + P+W+P+GR L+F R G + G +++++DL G NE + TPA+ASDP W +D Sbjct: 392 HNEGPSWAPNGRVLVFFRDTPGANGGPQIWTVDLTGYNEQRVTTPAFASDPSWSPLID 449 >gi|49474671|ref|YP_032713.1| translocation protein TolB [Bartonella quintana str. Toulouse] gi|67461954|sp|Q6FYQ1|TOLB_BARQU RecName: Full=Protein tolB; Flags: Precursor gi|49240175|emb|CAF26641.1| tolB protein [Bartonella quintana str. Toulouse] Length = 440 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 188/419 (44%), Positives = 284/419 (67%), Gaps = 5/419 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +S+HA +K +SA+++P+ IA T FVS D +G K++ VV+ DL+RS +F + + SF + Sbjct: 24 SSVHAKLKGTISSADFNPIPIAITDFVSNDSIGLKIAAVVTADLERSGLFLPLDKASFFE 83 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 KI+NP+S P F W + AQ LVTG+VI+E RLRV+FRLWDV +Q+ G++F+++ Sbjct: 84 KISNPNSQPHFFHWQKIRAQGLVTGQVIRENDGRLRVDFRLWDVFGHQQLKGRRFYTATE 143 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH I+D+IY +TGE G F++RI+F+ E+ L +MD+DGAN+ Y++ Sbjct: 144 RWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGPQNARIKRLAIMDQDGANLIYISDG 203 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +L PRFSP +Q++ Y Y+ VYL + + + IG F++M +APRFSS+G Sbjct: 204 SELVL-TPRFSPKRQEITYMAYERNQPPHVYLQQIEMGQR-ELIGTFKNMTIAPRFSSDG 261 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 ++ ++S +Q + + ++Y++DL++ RLT T I+ SASYSPD +QIVF SDR GK Q+ Sbjct: 262 QKVIMSLLQNNGSANLYTMDLRTRMMTRLTTTSAIDTSASYSPDGTQIVFSSDRSGKPQI 321 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y M ++GS+ +RIS + E SY P+WSP+GD IAFTK +F+IGVM+ DG ER+L Sbjct: 322 YTMNADGSNLQRISAN-EGSYSTPIWSPRGDYIAFTKQLEGQFSIGVMRPDGKGERILTT 380 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+GR L+F RK G G K+Y+ID+ GRNE + TP ASDP W ++ Sbjct: 381 GFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDITGRNERQLPTPNDASDPAWSPLLN 438 >gi|121601818|ref|YP_988482.1| translocation protein TolB [Bartonella bacilliformis KC583] gi|120613995|gb|ABM44596.1| Tol-Pal system beta propeller repeat protein TolB [Bartonella bacilliformis KC583] Length = 442 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 186/427 (43%), Positives = 281/427 (65%), Gaps = 8/427 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 + + + L G F HA +K + A+++P+ IA T F++ D +G K++ V++ DL+RS Sbjct: 15 ISMSVCLFSGSF---AHAQLKGTISKADFNPIPIAITDFIAQDSIGQKIAAVIAADLERS 71 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F + +DSF +KIT+P+ P F +W L AQ LVTG + + RLR++FRLWDV Sbjct: 72 GLFKTLDKDSFLEKITDPNGQPNFSNWQQLNAQGLVTGYIHSDSNGRLRIDFRLWDVFTH 131 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 KQI G++F+++ WR++AH ISD+IY +TGE G F++R++FV E+ L +M Sbjct: 132 KQIKGRRFYTTTEHWRRVAHMISDEIYSKMTGESGYFDTRVVFVDETGPFNARIKRLAIM 191 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN+ YL+ + +L PRFSP++Q++ Y YD VYL + + IG F Sbjct: 192 DQDGANLTYLSNGTELVL-TPRFSPSRQEITYMAYDKHKTAHVYLQQIETGQR-ELIGTF 249 Query: 257 RSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 +M +APRFS +G++ ++S+ KD + ++Y++DL++ RLT T I+ SASYSPD Q Sbjct: 250 DNMTIAPRFSPDGQKVIMSLLKDNGSANLYTMDLRTRTITRLTTTRAIDTSASYSPDGKQ 309 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 IVF SDR+GK Q+Y+M ++GS+ RIS + E SY P WSP+GD IAFTK S +F+IGV Sbjct: 310 IVFSSDRDGKPQIYIMDADGSNPHRISAN-EGSYSTPTWSPRGDYIAFTKQSQGQFSIGV 368 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 M +G ERLL + + PTW+P+GR L+F R ++ + G+++Y+ID+ GRNE + TP Sbjct: 369 MHPNGQGERLLTTGFHNEGPTWAPNGRVLMFFR-QNANQGAQIYTIDITGRNERRLPTPN 427 Query: 436 YASDPQW 442 ASDP W Sbjct: 428 NASDPAW 434 >gi|163869131|ref|YP_001610370.1| translocation protein TolB [Bartonella tribocorum CIP 105476] gi|161018817|emb|CAK02375.1| TolB protein [Bartonella tribocorum CIP 105476] Length = 441 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 185/414 (44%), Positives = 282/414 (68%), Gaps = 5/414 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +S++A +K +SA+++P+ IA T F+S D +G K++ VV+ DL+RS +F + +++F + Sbjct: 25 SSVYAQLKGTISSADFNPIPIAITDFISNDSIGSKITAVVTADLERSGLFVPLDKENFFE 84 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 KI+NP+ P F W + AQ LV G+V++E RLRV+FRLWDV ++Q+ G++F+++ Sbjct: 85 KISNPNKQPHFASWQKIKAQGLVMGQVMREIDGRLRVDFRLWDVFGQRQLKGRRFYTATE 144 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH I+D+IY +TGE G F++RI+F+ E+ L +MD+DGAN+ Y++ Sbjct: 145 RWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGPQNARIKRLAMMDQDGANLIYMSDG 204 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +L PRFSP +Q++ Y Y+D + VYL + + + IG F +M +APRFSS+G Sbjct: 205 SELVL-TPRFSPKRQEMTYMAYEDNQVPHVYLQQIEMGQR-ELIGTFHNMTIAPRFSSDG 262 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 ++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD QIVF SDR GK Q+ Sbjct: 263 QKVIMSLLQNDGSANLYTMDLRTRTMTRLTTTSAIDTSASYSPDGQQIVFSSDRSGKPQI 322 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y M ++GSD +RIS + E SY P+WSP+GD IAFTK +F+IGVM+ DG ER+L Sbjct: 323 YKMNADGSDIQRISSN-EGSYSTPIWSPRGDYIAFTKQLSGQFSIGVMRPDGQGERILTT 381 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + + PTW+P+GR L+F RK G G K+Y+ID+ GRNE + TP ASDP W Sbjct: 382 GFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDITGRNERQLPTPNDASDPAW 434 >gi|240851219|ref|YP_002972622.1| translocation protein TolB [Bartonella grahamii as4aup] gi|240268342|gb|ACS51930.1| translocation protein TolB [Bartonella grahamii as4aup] Length = 441 Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 188/426 (44%), Positives = 287/426 (67%), Gaps = 8/426 (1%) Query: 21 LVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 ++ G + +SI +A +K +SA+++P+ IA T F+S D +G K+S VV+ DL+RS Sbjct: 13 FIVTCGLWLSSISSGYAQLKGTISSADFNPIPIAITDFISNDSIGLKISAVVTADLERSG 72 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F +++++F + I+NP+ P F W + AQ LVTG+V++E RLRV+FRLWDV ++ Sbjct: 73 LFLPLNKENFLENISNPNKQPHFASWQKIKAQGLVTGQVMREIDGRLRVDFRLWDVFGQR 132 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 Q+ G++F+++ WR++AH I+D+IY +TGE G F++RI+F+ E+ L +MD Sbjct: 133 QLKGRRFYTATERWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGPQNARIKRLAMMD 192 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+ Y++ + +L PRFSP +Q++ Y Y+D + VYL + + + IG F Sbjct: 193 QDGANLIYMSDGSELVL-TPRFSPKRQEMTYMAYEDNQVPHVYLQQIEMGQR-ELIGTFN 250 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +M +APRFSS+G++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD QI Sbjct: 251 NMTIAPRFSSDGQKVIMSLLQNDGSANLYTMDLRTRTMTRLTTTSAIDTSASYSPDGKQI 310 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR GK Q+Y M ++GSD +RIS + E SY P+WSP+GD IAFTK +F+IGVM Sbjct: 311 VFSSDRSGKPQIYKMNADGSDIQRISSN-EGSYSTPIWSPRGDYIAFTKQLSGQFSIGVM 369 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + DG ER+L + + PTW+P+GR L+F RK G G K+Y+ID+ GRNE + TP Sbjct: 370 RPDGQGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDITGRNERQLPTPND 428 Query: 437 ASDPQW 442 ASDP W Sbjct: 429 ASDPAW 434 >gi|49476141|ref|YP_034182.1| translocation protein TolB [Bartonella henselae str. Houston-1] gi|67461959|sp|Q6G5R6|TOLB_BARHE RecName: Full=Protein tolB; Flags: Precursor gi|49238949|emb|CAF28247.1| tolB protein [Bartonella henselae str. Houston-1] Length = 443 Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 187/428 (43%), Positives = 284/428 (66%), Gaps = 10/428 (2%) Query: 21 LVLIGGFFPTS-----IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 ++I F+ TS +HA +K ++A+++P+ IA T F S D +G K++ VV+ DL+R Sbjct: 13 FIVICAFWLTSFSSVPVHAQLKGTISTADFNPIPIAVTDFFSNDSIGLKIAAVVAADLER 72 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F + + SF +KI+NP+ P F W + AQ LV G+VI+E RLRV+FRLWDV Sbjct: 73 SGLFLPLDKASFLEKISNPNRQPHFPYWQEIKAQGLVIGQVIRENDGRLRVDFRLWDVFG 132 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++Q+ G++F+++ WR++AH I+D+IY +TGE G F++RI+F+ E+ L + Sbjct: 133 QRQLKGRRFYTATERWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGPQNARIKRLAI 192 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN+ Y++ + +L PRFSP +Q++ Y Y+ + VYL + + + IG Sbjct: 193 MDQDGANLIYISDGSELVL-TPRFSPKRQEITYMAYEHNQVPHVYLQQIEMGQR-ELIGT 250 Query: 256 FRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F +M +APRFSS+G++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD + Sbjct: 251 FNNMTIAPRFSSDGQKVIMSLLQNDGSANLYTMDLRTRMMTRLTTTSAIDTSASYSPDGT 310 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR GK Q+Y M ++GS+ +RIS + E SY P+WSP+GD IAFTK +F+IG Sbjct: 311 KIVFSSDRSGKPQIYTMNADGSNLQRISSN-EGSYSTPIWSPRGDYIAFTKQLEGQFSIG 369 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM DG ER+L + + PTW+P+GR L+F RK G G K+Y+ID+ GRNE + TP Sbjct: 370 VMHPDGQGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDITGRNERQLPTP 428 Query: 435 AYASDPQW 442 ASDP W Sbjct: 429 NDASDPAW 436 >gi|254473216|ref|ZP_05086614.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp. JE062] gi|211957937|gb|EEA93139.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp. JE062] Length = 454 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 184/419 (43%), Positives = 273/419 (65%), Gaps = 8/419 (1%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSI---DELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +A +++ N P+ IA + F +++ G++S+VV+ DLQRS +F I + Q Sbjct: 40 YALIELDITQGNVEPMPIAISPFAGSGLQEDVAGQISQVVAADLQRSGLFRPIDPAAHIQ 99 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + N ++PRF DW ++G+Q LVTG + ++ ++R EFRLWDV +Q+IG++FF++P Sbjct: 100 QEMNVGTMPRFGDWRTIGSQALVTGSIAQQANGQIRAEFRLWDVFAGQQLIGQQFFTTPE 159 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 +WR++AH ISD IYQ +TGEKG F++R++F+ ES + L +MD+DGAN+RYLT Sbjct: 160 NWRRLAHIISDAIYQRLTGEKGYFDTRVVFIDESGPKDARRKRLAIMDQDGANVRYLT-R 218 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 D ++ PRFSP Q+V Y +Y + +VYL + + + +GNF M APRFS +G Sbjct: 219 GDDLVLTPRFSPVSQEVTYMSYVGGNP-QVYLFNIETGQR-EVLGNFPGMTFAPRFSPDG 276 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 ++ ++S+Q+ ++Y +DL++ T RLTNT I+ S S+SPD Q+VFESDR G +QLY Sbjct: 277 QKVIMSLQQGSNANLYLMDLRTRRTTRLTNTAAIDTSPSFSPDGRQVVFESDRGGSQQLY 336 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM SNGS +RIS Y PVWSP+GDLIAFTK +F IGV++ DG ER+L E Sbjct: 337 VMNSNGSGAERISFGP-GQYSTPVWSPRGDLIAFTKVHQGRFMIGVIRPDGKGERILTEG 395 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + P WSP+GR L F R G+ G +++++DL G NE L+ TP +ASDP W +D Sbjct: 396 YHNEGPAWSPNGRVLTFFRDTVGEQGGPQVWTVDLTGYNEQLVQTPNFASDPAWSPLLD 454 >gi|330814394|ref|YP_004358633.1| TolB protein precursor [Candidatus Pelagibacter sp. IMCC9063] gi|327487489|gb|AEA81894.1| TolB protein precursor [Candidatus Pelagibacter sp. IMCC9063] Length = 448 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 202/448 (45%), Positives = 280/448 (62%), Gaps = 23/448 (5%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF-----------VSIDELGGKV 65 LCL+ + I FF S A VK+ N P+ A +KF + EL K+ Sbjct: 4 LCLIFISIL-FFNHSAFAVVKIDITRGNLEPLPTAISKFYVDNPSKFSPELKALELDKKI 62 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 SEV+S +L+RS +F++I S+ Q + P FQDW + AQ++++G+++ + K RLR Sbjct: 63 SEVISNNLKRSGLFSIIDPKSYIQSPRIAHAKPTFQDWALIKAQIMISGKLVIDEKKRLR 122 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 VEFRLWDV + K++ G F++P SWR+IAH ISD IY+ +TGE G F++RI++V+ES Sbjct: 123 VEFRLWDVVNAKEMEGLALFATPNSWRRIAHIISDKIYERMTGELGYFDTRIIYVAESGP 182 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L +MD+DGAN +YLT ++++ PRF+P Q V Y +Y +++ RVYL++ Sbjct: 183 KDQRIKKLAIMDQDGANNKYLTLG-NELVLTPRFNPASQMVTYMSY-FKNLPRVYLLNIE 240 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + +G+F M APRFS +GK+ ++S KD DIYS+D++S E+LT+ I+ Sbjct: 241 TGMQ-ELVGDFPGMTFAPRFSPDGKKIIMSFAKDGNSDIYSMDIKSRVVEQLTSHPSIDT 299 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SYS D SQI F SDR G +Q+YVM+S+GS KRIS + Y PVWSP+GDLIAFTK Sbjct: 300 SPSYSSDGSQITFNSDRSGAQQIYVMKSDGSKAKRISFG-QGLYGTPVWSPRGDLIAFTK 358 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF---SRKKDGDTG----SKL 418 KF IGVM+ DG+ ERLL E+ +AP+WSP+GR LIF SR K TG S L Sbjct: 359 IYRGKFYIGVMRSDGTGERLLTENYYQEAPSWSPNGRVLIFYRESRTKKSKTGFSTSSSL 418 Query: 419 YSIDLNGRNETLINTPAYASDPQWVGFM 446 +SIDL G NE I T ASDP W G + Sbjct: 419 WSIDLTGYNERKIKTLTDASDPAWSGLL 446 >gi|148258089|ref|YP_001242674.1| translocation protein TolB [Bradyrhizobium sp. BTAi1] gi|146410262|gb|ABQ38768.1| protein tolB precursor [Bradyrhizobium sp. BTAi1] Length = 462 Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 181/410 (44%), Positives = 262/410 (63%), Gaps = 8/410 (1%) Query: 37 KVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 +V ++P+ IA FV ++G +S+V++ +L+RS +F + +F ++I Sbjct: 52 RVPILPGEFAPIPIAIPPFVPGGAGDADVGNGISQVITNNLKRSGLFAPVDPAAFPERIA 111 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 N ++ P+F W L Q LVTGR ++ RL+ EFRLWD +Q+ G+++ ++P WR Sbjct: 112 NFEAPPQFASWRPLALQGLVTGRATRQPDGRLKAEFRLWDPNSGQQLTGQQYVTAPEYWR 171 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +IAH ISD IY +TGEKG F+SR++FV ES S L +MD+DGAN+RYLT D Sbjct: 172 RIAHIISDQIYSQMTGEKGYFDSRVVFVDESGPSERRVKRLALMDQDGANVRYLTRGADL 231 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +L PRFSP+ Q++ Y + D +VYL++ + + +GNF M +PRFS +G+R Sbjct: 232 VL-TPRFSPSSQEITYMEFGQGDP-KVYLLNIETGQR-EIVGNFPGMSFSPRFSPDGQRI 288 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 ++S+Q+ +++ +DL+S T RLT+T I+ S YSPD +QI FESDR GK Q+YVM Sbjct: 289 ILSLQQGGNSNLFVMDLRSRTTTRLTDTPAIDTSPCYSPDGNQICFESDRGGKPQIYVMP 348 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 +NG +RIS E SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L + Sbjct: 349 ANGGGAQRISFG-EGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKTDGSGERILTSGFHN 407 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + PT+SP+GR L+F R G G LY+ID++GR E + +P YASDP W Sbjct: 408 EGPTFSPNGRVLMFFRDPGGTAGPSLYTIDVSGRFEQKVPSPGYASDPAW 457 >gi|154246985|ref|YP_001417943.1| beta-propeller repeat-containing to-pal system protein TolB [Xanthobacter autotrophicus Py2] gi|154161070|gb|ABS68286.1| Tol-Pal system beta propeller repeat TolB [Xanthobacter autotrophicus Py2] Length = 450 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 178/406 (43%), Positives = 265/406 (65%), Gaps = 5/406 (1%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 ++ + P+ IA T + E+G +S V++ DL+RS +F I +F ++ITNPD+ Sbjct: 45 RIDLTPGAFKPIPIAITDLLGEVEIGRNISGVITADLRRSGLFAPIDPKAFVEQITNPDT 104 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 PRFQDW + AQ L+TGRV ++ R +V FRLWDV +Q+ ++F + P +WR+IAH Sbjct: 105 -PRFQDWRVINAQALLTGRVTRQADGRFQVVFRLWDVFAGQQLAAQQFVAQPDNWRRIAH 163 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+ YL+ D ++ Sbjct: 164 IIADAIYEKMTGEKGYFDTRIVFVDESGPKERRVKRLAIMDQDGANVSYLS-RGDGLVLT 222 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSP Q++ Y +Y D +V+L++ + + +GNF M +PRF+ +G+R ++S+ Sbjct: 223 PRFSPTSQEITYMSYGAGD-PKVFLLNIETGQR-EIVGNFPGMSFSPRFAPDGQRVIMSL 280 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 Q+ +I+ +DL+S AT RLT+T I+ + YSPD QI FESDR G Q+YVM ++GS Sbjct: 281 QQGGNSNIFVMDLRSRATTRLTDTAAIDTAPCYSPDGRQICFESDRGGTSQIYVMNADGS 340 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +RIS A Y PVWSP+GD IA+T+ + +FAIGVM+ DGS ER+L E + + PT Sbjct: 341 GARRISFGN-ARYSTPVWSPKGDWIAYTRQAEGRFAIGVMRTDGSGERVLTEGYHNEGPT 399 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++P+GR ++F R G +G LYS+D+ G NE + TP+YASDP W Sbjct: 400 FAPNGRVIMFFRDPGGASGPSLYSVDVTGYNEQRVPTPSYASDPAW 445 >gi|300023930|ref|YP_003756541.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium denitrificans ATCC 51888] gi|299525751|gb|ADJ24220.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium denitrificans ATCC 51888] Length = 445 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 185/431 (42%), Positives = 272/431 (63%), Gaps = 9/431 (2%) Query: 17 LCLLLVLIG--GFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSKDL 73 +CL+ V + F T A +K +P+ IA FV D +L VS+V+ DL Sbjct: 14 ICLIAVGLALDSGFATRAQAQLKGTQTEGTIAPIPIAIPLFVGDDPQLAANVSDVLQADL 73 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 +RS +F + + SF ++I + +++PRF DW S+ A LV GR++ G R+ EFRLWDV Sbjct: 74 ERSGLFRPLDRASFLEQIRDVNAVPRFGDWRSVQADALVVGRIVNAGDGRVGAEFRLWDV 133 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 KQ+ G++F +S +WR+IAH I+D +Y+ +TGEKG F++R++FV E+ + L Sbjct: 134 ASGKQLAGQRFSTSAQNWRRIAHMIADSVYERLTGEKGYFDTRVVFVDETGPAQNRVKRL 193 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD+DGAN+R LT ++ +L PRFSP Q++ Y +Y D +V++M+ R + + Sbjct: 194 AIMDQDGANVRLLTQGKELVL-TPRFSPTNQEITYMSY-TSDQPKVFIMNLESGRR-ELV 250 Query: 254 GNFRSMILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 G+F M APRFS +G+R ++S+ D IY +DL++ RLT + I+ S SYSPD Sbjct: 251 GDFPGMTFAPRFSPDGQRVVMSLGTPDGRSSIYEMDLRTRQPRRLTESSGIDTSPSYSPD 310 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 QIVFESDR+G ++LYVM ++GS IS SY PVWSP+GD IAFT+ +G +F Sbjct: 311 GRQIVFESDRDGTQKLYVMNADGSGAHPISLGG-GSYSTPVWSPRGDYIAFTQQAGGRFL 369 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLI 431 IGVMK DGS ER+L E + + PTW+P+GR L+F R +G K+YS+D+ G NE + Sbjct: 370 IGVMKPDGSGERVLTEGFHNEGPTWAPNGRVLMFWRDSQSTSGGPKIYSVDITGFNERQV 429 Query: 432 NTPAYASDPQW 442 TP++ASDP W Sbjct: 430 TTPSFASDPAW 440 >gi|254455821|ref|ZP_05069250.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus Pelagibacter sp. HTCC7211] gi|207082823|gb|EDZ60249.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus Pelagibacter sp. HTCC7211] Length = 447 Score = 346 bits (887), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 186/450 (41%), Positives = 276/450 (61%), Gaps = 28/450 (6%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIA-------------FTKFVSIDEL 61 I +CL L++ P A ++V N +P+ +A F K + + + Sbjct: 6 IFICLFLII-----PIKAFALIEVDITRGNLNPLPLAVSPLSIDENSKKSFEKILDKENI 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++S +V +L+ S +FN +++D+F Q + PRF+DWN + AQ L+TG+V Sbjct: 61 GSEISIIVENNLRTSGLFNPLNKDAFLQAPDIANLKPRFEDWNLIKAQALITGKVAYI-D 119 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 ++LRVEFRLWDV K+++ F + P +WR++ H ISD IY+ +TGEKG F++RI++V+ Sbjct: 120 EKLRVEFRLWDVLAGKEMMALAFTTVPNNWRRVGHIISDKIYERLTGEKGYFDTRIIYVA 179 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E K L +MD+DGAN ++LT ++++ PRF+P Q V Y +Y +++ RVYL Sbjct: 180 EEGPKTQRKKKLAIMDQDGANNKFLTLG-NELVLTPRFNPTSQMVTYLSY-FKNLPRVYL 237 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +D + +G+F M APRFS +GK+ ++S KD DI+++DL++ ER+TN Sbjct: 238 LDIETGTQ-EVVGDFPGMTFAPRFSPDGKKIIMSFAKDGKSDIFTMDLENRIVERITNHP 296 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ S SYSP+ I F SDR G +Q+Y+M+++GSD KRIS Y PVWSP+GDLI Sbjct: 297 SIDTSPSYSPNGKFIAFNSDRSGYQQIYIMKNDGSDVKRISFG-NGIYGTPVWSPRGDLI 355 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-----GS 416 AFTK KF IGVM+ DG+ ERLL E+ +AP+WSP+GR LIF R+ + + Sbjct: 356 AFTKLHNGKFYIGVMRTDGTGERLLTENYYQEAPSWSPNGRVLIFYRETKTNAKGEGFSA 415 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 KL+SIDL G NE L+ TP ASDP W + Sbjct: 416 KLWSIDLTGYNERLVTTPTDASDPSWSSLL 445 >gi|218462393|ref|ZP_03502484.1| translocation protein TolB [Rhizobium etli Kim 5] Length = 360 Score = 345 bits (886), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 179/357 (50%), Positives = 247/357 (69%), Gaps = 4/357 (1%) Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 +F +K D+ PRF+DW + AQ LVTGRV KE RLR EFRLWD +Q+ G++FF Sbjct: 3 AFIEKDLQSDASPRFEDWKVINAQALVTGRVTKEADGRLRAEFRLWDPFAGQQMTGQQFF 62 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +MD+DG N+R Sbjct: 63 TQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIMDQDGFNVRM 122 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT D +L PRFSP++Q+V Y ++ ++ RVYL+ + + +GNF M +PRF Sbjct: 123 LTDGSDLVL-TPRFSPSRQEVTYMSFANQQP-RVYLLQLETGQR-EVVGNFPGMTFSPRF 179 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ FESDR GK Sbjct: 180 SPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARVSFESDRGGK 239 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVMK DGS ER+ Sbjct: 240 PQIYVMNADGSGQTRIS-FGDGSYSTPVWSPRGDLIAFTKQSGGKFSIGVMKPDGSGERI 298 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Y SDP W Sbjct: 299 LTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTPTYGSDPAW 355 >gi|312115991|ref|YP_004013587.1| Tol-Pal system beta propeller repeat protein TolB [Rhodomicrobium vannielii ATCC 17100] gi|311221120|gb|ADP72488.1| Tol-Pal system beta propeller repeat protein TolB [Rhodomicrobium vannielii ATCC 17100] Length = 435 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 182/415 (43%), Positives = 260/415 (62%), Gaps = 6/415 (1%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P+ A V+V + IA F D + + ++VV+ DLQRS +F + +F Sbjct: 21 PSLASAQVEVEIRRGQVRAIPIAVADFTG-DPVAAETAQVVTADLQRSGLFRPVPNSAFI 79 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 ++ N D+ PRFQDW L Q LV GRV G RLR E+RLWDV + I G++FF Sbjct: 80 ERGANVDTPPRFQDWKVLNIQALVVGRVTDAGDGRLRGEYRLWDVVTGRHIAGEQFFIPR 139 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R++AH I+D +Y+ +TGE+G F+SR++FV ES L +MD+DGAN+R LT Sbjct: 140 NASRRLAHIIADAVYERLTGERGYFDSRVVFVDESGPKNQRVKRLAIMDQDGANLRLLTQ 199 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 R+ +L PRF P Q++ Y Y + + RV L + + + +G+F +M APRFS Sbjct: 200 GRELVL-TPRFHPLSQEITYTAYRNGEP-RVMLRNIMTGQE-EVLGDFPNMSFAPRFSPQ 256 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G R ++S+Q+ + +I+ +D++S RLT T I+ + YSPD QIVFESDREGK+QL Sbjct: 257 GDRVVMSLQEGGSSNIFELDVRSRRMMRLTQTNAIDTAPCYSPDGRQIVFESDREGKQQL 316 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 YVM ++GS Q+RI+ + Y PVWSP+GDLIAFTK FAIGV++ DGS ER+L E Sbjct: 317 YVMNADGSGQRRITFG-DGRYSTPVWSPRGDLIAFTKQVPGGFAIGVIRPDGSGERVLTE 375 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + + PTWSP+GR ++F R+ G + G+KL+SIDL G NE + TP++ SDP W Sbjct: 376 GYHNEGPTWSPNGRVILFFRESGGANGGAKLFSIDLTGYNERQMPTPSFGSDPAW 430 >gi|146338269|ref|YP_001203317.1| protein tolB [Bradyrhizobium sp. ORS278] gi|146191075|emb|CAL75080.1| Protein tolB precursor [Bradyrhizobium sp. ORS278] Length = 376 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 172/375 (45%), Positives = 246/375 (65%), Gaps = 4/375 (1%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +++ +L+RS F + +F ++ITN D +P+F W L Q L+TGR ++ RL V+ Sbjct: 1 MITNNLKRSGYFAPVDPAAFPERITNFDQLPQFNSWKPLSVQGLLTGRATRQSDGRLNVQ 60 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWDV +Q +++ ++P WR+IAH ISD +Y ++ GEKG F+SR++FV ES S Sbjct: 61 FRLWDVNSGQQSAAQQYVTAPEYWRRIAHIISDQVYTALLGEKGYFDSRVVFVDESGPSE 120 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L +MD+DGAN+RYLT D +L PRFSP+ Q++ Y + D +VYL + Sbjct: 121 RRVKRLALMDQDGANVRYLTRGSDLVL-TPRFSPSSQEITYMEFGQGDP-KVYLFNIETG 178 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S Sbjct: 179 QR-EIVGNFPGMSFSPRFSPDGQRIILSLQQGGNSNLFVMDLRSRSTTRLTDTPAIDTSP 237 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 YSPD SQI FESDR GK Q+YVM ++G + +RIS E SY PVWSP+GD IAFTK Sbjct: 238 CYSPDGSQICFESDRGGKPQIYVMSASGGNAQRISFG-EGSYSTPVWSPRGDYIAFTKQG 296 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G +FAIG+MK DGS ER+L + + PT+SP+GR L+F R G G LY+ID++GR Sbjct: 297 GGQFAIGIMKTDGSGERILTAGFHNEGPTFSPNGRVLMFFRDPGGTAGPSLYTIDVSGRF 356 Query: 428 ETLINTPAYASDPQW 442 E + TP YASDP W Sbjct: 357 EQKVPTPGYASDPAW 371 >gi|71083302|ref|YP_266021.1| translocation protein TolB [Candidatus Pelagibacter ubique HTCC1062] gi|91762268|ref|ZP_01264233.1| translocation protein TolB precursor [Candidatus Pelagibacter ubique HTCC1002] gi|118574591|sp|Q4FN21|TOLB_PELUB RecName: Full=Protein tolB; Flags: Precursor gi|71062415|gb|AAZ21418.1| tolB protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718070|gb|EAS84720.1| translocation protein TolB precursor [Candidatus Pelagibacter ubique HTCC1002] Length = 446 Score = 339 bits (869), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 183/431 (42%), Positives = 267/431 (61%), Gaps = 23/431 (5%) Query: 34 AFVKVATNSANYSPVSIA-------------FTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 A ++V N +P+ +A F K + ++LG ++S VV +L++S +FN Sbjct: 19 ALIEVDITRGNLNPLPVAVSPLSIDNKSKENFKKILKQEDLGSEISIVVENNLRQSGLFN 78 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + +++F Q+ + PRF+DWN + AQ LVTG+V ++LRVEFRLWDV K+++ Sbjct: 79 PLDKNAFLQEPDVANLKPRFEDWNLIKAQALVTGKVTFV-DEKLRVEFRLWDVLAGKEMM 137 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 F + P++WR++ H I+D +Y+ +TGEKG F++RI++VSE L +MD+DG Sbjct: 138 ALAFTTVPSNWRRVGHIITDKVYERLTGEKGYFDTRIIYVSEEGPKTKRIKKLAIMDQDG 197 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N +YLT ++++ PRFSP Q V Y +Y ++ RVYL+D + +G+F M Sbjct: 198 FNNKYLTLG-NELVLTPRFSPTNQMVTYLSYF-RNLPRVYLLDIETGMQ-EVVGDFPGMT 254 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 APRFS +GK+ ++S KD DIY++DL++ ER+TN I+ S SYSPD +I F S Sbjct: 255 FAPRFSPDGKKIIMSFAKDGNSDIYTMDLENRIVERITNHPSIDTSPSYSPDGKKITFNS 314 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G +Q+YVM SNG + KRIS Y PVWSP+GDLIAFTK KF IGVM+ DG Sbjct: 315 DRSGYQQIYVMDSNGKNVKRISFGN-GLYGTPVWSPRGDLIAFTKLHKGKFYIGVMRTDG 373 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-----GSKLYSIDLNGRNETLINTPA 435 + ERLL E+ +AP+WSP+GR LIF R+ ++ +KL+SIDL G NE ++ T Sbjct: 374 TGERLLTENFYQEAPSWSPNGRVLIFYRETKTNSKGEGFSAKLWSIDLTGYNEKMVETET 433 Query: 436 YASDPQWVGFM 446 ASDP W + Sbjct: 434 DASDPSWSSLL 444 >gi|262277490|ref|ZP_06055283.1| Tol-Pal system beta propeller repeat protein TolB [alpha proteobacterium HIMB114] gi|262224593|gb|EEY75052.1| Tol-Pal system beta propeller repeat protein TolB [alpha proteobacterium HIMB114] Length = 445 Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 188/450 (41%), Positives = 277/450 (61%), Gaps = 26/450 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID------------EL 61 KI + L L+L F + A V + N P+ A + F ID +L Sbjct: 3 KILVTLFLIL----FTSKSFAVVTIDITRGNLEPLPTAISNFY-IDNPEKFSEKIKSLKL 57 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 + +V+ +L RS +F ++ S+ Q+ PRF+DW + AQ++V+G++ + K Sbjct: 58 EENLPKVIKGNLMRSGLFYVLDNKSYIQQPKLSHLKPRFEDWRLIKAQIMVSGKLRIDEK 117 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RLRVEFRLWDV K+I G F++P+SWR+IAH ISD IYQ +TGE+G F++RI++V+ Sbjct: 118 GRLRVEFRLWDVVSAKEIEGLALFATPSSWRRIAHIISDKIYQRLTGEEGYFDTRIIYVA 177 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN ++LT ++++ PRFSPN + V Y +Y +++ RVYL Sbjct: 178 ESGPKTQREKKLAIMDQDGANNKFLTLG-NELVLTPRFSPNGKMVTYMSY-FKNLPRVYL 235 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 ++ + +G+F M APRFS +G++ ++S +D DIY++D++S E++T+ Sbjct: 236 LNIETG-IQEVVGDFPGMTFAPRFSPDGRKIIMSFARDGNSDIYTMDIESRRVEQITSNP 294 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ S S+SPD IVF SDR G +Q+Y M+S+G KRIS+ K Y PVWSP+GDLI Sbjct: 295 AIDTSPSFSPDGRFIVFNSDRSGFQQIYTMRSDGRGVKRISRGK-GLYGTPVWSPRGDLI 353 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-----KKDGDTGS 416 AFTK KF IGVM+ DG+ ERLL ++ +AP+WSP+GR LIF R KK + + Sbjct: 354 AFTKIHKGKFYIGVMRTDGTGERLLTQNFYQEAPSWSPNGRVLIFYRETAGGKKGQGSSA 413 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 KL++ID+ G NE I TP ASDP W G + Sbjct: 414 KLWAIDITGYNEVKIKTPTDASDPSWSGLL 443 >gi|288957825|ref|YP_003448166.1| TolB protein [Azospirillum sp. B510] gi|288910133|dbj|BAI71622.1| TolB protein [Azospirillum sp. B510] Length = 450 Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 178/444 (40%), Positives = 269/444 (60%), Gaps = 19/444 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVS 66 L + LL+ +G P A +++ P+ IA T F ++G +S Sbjct: 9 LKLAGATGALLLSLGVAAPQEARAELRIDITRGVSEPLPIAITSFAGSGGRDAQMGADIS 68 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSI----PRFQDWNSLGAQVLVTGRVIKEGKD 122 +V+S DL+RS +F + F Q PD + PR+QDW +LGAQ LV G G Sbjct: 69 KVISDDLERSGLFKPLDPRGFLQ---TPDQLRSGEPRYQDWKALGAQALVAGNTTTGGDG 125 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 R++V+FRLWDV + + G + +SP WR+IAH ++D IY+ +TGE G F++RI++V+E Sbjct: 126 RMKVDFRLWDVAAGQYMQGLSYSASPQEWRRIAHIVADAIYKRLTGEDGYFDTRIVYVAE 185 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S + K L +MD+D AN ++LT + +L PRFSP Q++ Y +Y ++ RVYL Sbjct: 186 SGPANARKKQLAIMDQDSANHQFLTDGQTLVL-TPRFSPTSQEITYMSYFNKKP-RVYLF 243 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + R + +G+F M APRFS +G + ++S+ ++ DIY++DL++ +LT+ Sbjct: 244 NIDTGRQ-EVLGDFPGMTFAPRFSPDGNKVIMSMAQNGNTDIYTLDLRTRRQTQLTDAPG 302 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ + SYSPD +IVFESDR G +QLY+M ++GS KR++ E Y PVWSP+GDLIA Sbjct: 303 IDTAPSYSPDGQRIVFESDRGGTQQLYIMGADGSGVKRLTF-GEGRYGTPVWSPRGDLIA 361 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG----SKL 418 FT+ G FA+GV++ DG+ ER+L E +++ PTW+P+GR L+F + G +KL Sbjct: 362 FTRQRGSSFAVGVIRPDGTGERILTEAFHVEGPTWAPNGRVLMFFKDLPSGDGRGRNAKL 421 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 YSID+ G NE ++TP ASDP W Sbjct: 422 YSIDITGANERRVSTPVDASDPAW 445 >gi|108755186|emb|CAK32578.1| periplasmic component of the Tol biopolymer transport system [uncultured organism] Length = 449 Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 187/437 (42%), Positives = 273/437 (62%), Gaps = 20/437 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDE--LGGKVSEVVSKD 72 L ++ VL G + S A +++ P+ IA T F+ + DE G ++ VV+ D Sbjct: 17 LAVIFVLGGSW---SASAELRIDITRGTVEPLPIAVTDFLGTAADETRFGRDIASVVAAD 73 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR--VIKEGKDRLRVEFRL 130 L+RS +F I +F Q T ++PRF DW + AQ LV GR ++++G RLRVEFRL Sbjct: 74 LERSGLFLPIDSRAFIQTGTALSTLPRFADWRVINAQALVQGRTQIVEDG--RLRVEFRL 131 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 WDV +Q++G ++ ++P WR++AH I+D I++ +TGE G F++RI++++E Sbjct: 132 WDVFAEQQMVGFEYHTAPNGWRRVAHIIADAIFKRVTGEDGYFDTRIVYIAERGPQDRRI 191 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L +MD+DG N R+LT + ++ PRFSP Q++ Y +Y + RVY+ + R Sbjct: 192 KRLAIMDQDGENHRFLTDG-NTLVLTPRFSPTLQEIIYLSY-YSGVPRVYIFNIDTGRE- 248 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + +G+F M APRFS++GK ++S+ KD +IY++DL + A +RLT I+ S S+ Sbjct: 249 EIVGDFPGMTFAPRFSADGKAVIMSMAKDGNSEIYTLDLSTRAVQRLTFHSAIDTSPSFD 308 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 +S ++VF SDR G +QLYVM +GS+ +RIS K Y PVWSP+GDLIAFTK + Sbjct: 309 ANSGKVVFNSDRGGTQQLYVMDGDGSNVRRISFGK-GRYATPVWSPRGDLIAFTKIHKGR 367 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGDTGSKLYSIDLNG 425 F IGVM+ DGS+ERLL ED ++APTW+P+GR L+F R+ K G S+LYSIDL G Sbjct: 368 FFIGVMRTDGSEERLLAEDFLVEAPTWAPNGRVLMFFRQEPSDAKGGGGRSRLYSIDLTG 427 Query: 426 RNETLINTPAYASDPQW 442 NE I TP ASDP W Sbjct: 428 YNEREIITPLDASDPAW 444 >gi|182677268|ref|YP_001831414.1| beta-propeller repeat-containing to-pal system protein TolB [Beijerinckia indica subsp. indica ATCC 9039] gi|182633151|gb|ACB93925.1| Tol-Pal system beta propeller repeat protein TolB [Beijerinckia indica subsp. indica ATCC 9039] Length = 448 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 249/400 (62%), Gaps = 4/400 (1%) Query: 43 ANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 + PVSIA T F + ++ + +RS N + SF ++NPD P+ Sbjct: 48 GEFKPVSIAVTTFAGDGSGPSHPTSIIINNFRRSVFLNPLDPKSFVSDVSNPDQAPQMDA 107 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDI 162 W ++ AQ +VTGR + RL+ EFRLWDV +QI G+++ + P + R++AH ISD I Sbjct: 108 WKTINAQFVVTGRSARSADGRLQTEFRLWDVTSGQQIAGQQYVTDPNNARRVAHIISDTI 167 Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ITGEKG F++R++FV E+ + L +MD+DGAN+RYLT D ++ PRFSP+ Sbjct: 168 FSRITGEKGFFDTRVVFVDETGARDHRRKRLAIMDQDGANVRYLT-RGDDLVVTPRFSPS 226 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Q + Y ++ D +V L++ + + +GNF M +PRFS +G++ ++S+ + + Sbjct: 227 SQDITYMSFGAADP-KVLLLNIETGQR-EVVGNFPGMTFSPRFSPDGQKIVMSLSQGASS 284 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++++DL+S T RL+++ I+ S SYSPD +QIVFESDR G +Q+Y+M + G +R+S Sbjct: 285 NLFTMDLRSRNTTRLSDSSSIDTSPSYSPDGTQIVFESDRGGTQQIYMMSAAGGGTRRVS 344 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + Y PVWSP+GD IAFT+ G F IGVMK DGS ER+L E + + PTW+P+G Sbjct: 345 F-GDGRYSTPVWSPRGDYIAFTRQKGSSFGIGVMKPDGSGERILTEGFHNEGPTWAPNGL 403 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++F R G G +L+ +DL GR E + TP++ASDP W Sbjct: 404 YIMFFRDASGQGGPRLFMVDLYGRGEFPVPTPSFASDPAW 443 >gi|83592430|ref|YP_426182.1| translocation protein TolB [Rhodospirillum rubrum ATCC 11170] gi|118574596|sp|Q2RVF0|TOLB_RHORT RecName: Full=Protein tolB; Flags: Precursor gi|83575344|gb|ABC21895.1| TolB protein [Rhodospirillum rubrum ATCC 11170] Length = 443 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 172/400 (43%), Positives = 251/400 (62%), Gaps = 9/400 (2%) Query: 47 PVSIAFTKFVSIDE----LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ IA F D +G V VVS DLQ S +F ++ ++ Q + N P+F D Sbjct: 44 PMPIAIPVFGGTDAQSSAMGRDVVGVVSNDLQGSGLFRVLDPAAYIQSLPNLAVQPQFAD 103 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDI 162 W ++ AQ LV G V +G RLRV FRLWDV +Q++G+ F + +WR+++H I+D+I Sbjct: 104 WRAINAQALVQGEVQPQGDGRLRVAFRLWDVFSGQQVVGRAFLTQGDNWRRVSHIIADEI 163 Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y++ITGE+G F++R+++V+E+ L +MD+DGAN R LT +L PRFSP Sbjct: 164 YKAITGEEGYFDTRVVYVAETGPKTNRVKKLAIMDQDGANQRNLTNGESMVL-TPRFSPT 222 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Q++ Y +Y + + RVYL + R + +G+F M APRFS +G + ++S+ D Sbjct: 223 AQEITYLSYYNS-VPRVYLFNIETGRR-ELLGDFPGMTFAPRFSPDGNKVIMSMALDGNT 280 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY +DL++ + RLTN I+ S SY+PD QI F SDR G +Q+YVM ++GS +RIS Sbjct: 281 EIYEMDLRTRRSSRLTNHPSIDTSPSYAPDGRQITFNSDRGGAQQIYVMNADGSGVQRIS 340 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + Y PVWSP+GDLIAFTK G +F IG M+ DGS E++L E ++ PTW+P+GR Sbjct: 341 FG-DGRYATPVWSPRGDLIAFTKLKGGRFFIGAMRPDGSGEKILTEGFLVEGPTWAPNGR 399 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L+F R +D + + L+SID+ G NE I+TP ASDP W Sbjct: 400 VLMFFR-QDPNGRTTLHSIDVTGYNERQISTPTEASDPAW 438 >gi|188584485|ref|YP_001927930.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium populi BJ001] gi|179347983|gb|ACB83395.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium populi BJ001] Length = 446 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 174/415 (41%), Positives = 249/415 (60%), Gaps = 7/415 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 T A +++ S + P+ IA F LG VS V++ +L+RS F + + F + Sbjct: 30 TPARAQLQLRIGSGAFQPMPIAVADFAGDASLGTLVSSVITNNLRRSGYFTPLEKGRFPE 89 Query: 90 KITNP--DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 NP D+ P F+ W G Q LVTGRV ++ RL V FRLWDV +QI G+++ + Sbjct: 90 ---NPSFDAAPNFEAWKGAGVQALVTGRVGRDASGRLTVAFRLWDVASGQQITGQQYGTD 146 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 A+ R+ H +SD +Y +TG F+SR+ FV ES + L VMD+DGAN+R LT Sbjct: 147 VANARRTGHLVSDAVYTKVTGLGPWFDSRVAFVDESGPKENRRKRLMVMDQDGANVRALT 206 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D + PR+SP Q +A+ T +V ++D + + +GNF SM +PRFS Sbjct: 207 GGGDVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGKR-QTVGNFASMSASPRFSP 265 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++SVQ+ DI +VDL S A +T L I+ S SYSPD SQIVFESDR G +Q Sbjct: 266 DGRRLVMSVQQGGNADIVTVDLGSKAQTPVTQGLAIDTSPSYSPDGSQIVFESDRGGSQQ 325 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +YVM ++GS+ +R+S E S P WSP+GDLIAFT+ FAI VMK DGS ER+L Sbjct: 326 IYVMGADGSNPRRLSFG-EGSASQPAWSPRGDLIAFTRQRKGGFAICVMKPDGSGERVLT 384 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 E + ++PT++P+G+ ++F R G G KLY +D+ G+ E + TP++ASDP W Sbjct: 385 EGFHNESPTFAPNGQYVMFFRDPGGQGGGKLYMVDITGKVEQPVPTPSFASDPTW 439 >gi|295688123|ref|YP_003591816.1| Tol-Pal system beta propeller repeat-containing protein Tolb [Caulobacter segnis ATCC 21756] gi|295430026|gb|ADG09198.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter segnis ATCC 21756] Length = 443 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 177/447 (39%), Positives = 266/447 (59%), Gaps = 15/447 (3%) Query: 7 IAEELNMKINLCLLLV---LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG 63 + +E M++ LL+V + G F T A ++V N+ P+ IA F G Sbjct: 6 VKKETPMRLRALLLMVAALMSGAAFVTPAAAQIEVDINAGAVKPMPIAIPAFSGATR-GA 64 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++++V+S +L+RS +F ++ K+++ + PRF DW + GAQ L+ G+V Sbjct: 65 EIAQVISGNLERSGLFQPLNVSGVADKLSDVNIQPRFPDWQTTGAQALINGQVTVGPDGG 124 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 LRV+FRLWDV ++Q++G +F S+P +WR++AH ISD +Y+ +TGEKG F++R+ FV+ES Sbjct: 125 LRVDFRLWDVFSQQQLLGLQFSSTPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAES 184 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L +MD+DGAN +YLT I+ PRFS Q++ Y +YL++ Sbjct: 185 GPKLNRIKRLAIMDQDGANPQYLT-DGSYIVMTPRFSSTSQELTYMALRPTGS-SIYLLN 242 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + +G F M+ APRFS +G + SV+K+ DIY +DL+S +T R+T I Sbjct: 243 LETSRQ-ETVGKFPGMVFAPRFSPDGGKVAFSVEKNGNSDIYVMDLRSRSTTRITTDPSI 301 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + S S+SPD ++IVF SDR G+ Q+YVM ++GS +RIS Y PVWSP+GD IAF Sbjct: 302 DTSPSFSPDGTKIVFNSDRGGQAQIYVMNTDGSGVRRISFGG-GRYTTPVWSPRGDFIAF 360 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 TK +G +F IGVM+ DG ERLL + PTW+P+GR L+F R+ G KL+++D+ Sbjct: 361 TKQTGGQFHIGVMRPDGGDERLLTTSYLDEGPTWAPNGRVLMFFREGGGGN-PKLWTVDI 419 Query: 424 NGRNETLINTPAY---ASDPQWVGFMD 447 GR ++ AY SDP W +D Sbjct: 420 TGR---ILRPAAYNGSGSDPAWSPLLD 443 >gi|296535985|ref|ZP_06898130.1| tol-Pal system beta propeller repeat protein TolB [Roseomonas cervicalis ATCC 49957] gi|296263689|gb|EFH10169.1| tol-Pal system beta propeller repeat protein TolB [Roseomonas cervicalis ATCC 49957] Length = 434 Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 173/410 (42%), Positives = 252/410 (61%), Gaps = 15/410 (3%) Query: 43 ANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP 98 A P+ IA F +LG ++ V++ +L+ S +F + + ++ Q + P Sbjct: 24 ARTDPIPIALPDFAGGSPQAQQLGQNITRVIANNLRNSGLFRPVERGAYIQTPEAAAAAP 83 Query: 99 RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI 158 RFQDW +GAQ LVTGR +G DR R+EFRLW+V +Q+ G + ++ A+WR+IAH I Sbjct: 84 RFQDWRVIGAQALVTGRAEPQG-DRARIEFRLWEVSSEQQLQGTAYTANAANWRQIAHVI 142 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 SD IY+ + GEKG F++RI++V+ES L +MD+DG N R+LT Q+L PR Sbjct: 143 SDVIYERMLGEKGYFDTRIVYVAESGPRDRRTRRLAIMDQDGENHRFLTDGSFQVL-TPR 201 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 F PN +++A+ +Y + RVYL + R + +GNF+ M L+PRFS +G+ ++S + Sbjct: 202 FHPNARQIAFMSYFNNQP-RVYLFNLDSGRQ-EVLGNFQGMTLSPRFSPDGRSVVLSSAR 259 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 +IY VDL S +LT+ +++S SYSPD SQIVF SDR G +QLYVM + G Sbjct: 260 GGDANIYVVDLASRRERQLTSGGGLDVSPSYSPDGSQIVFNSDRGGDQQLYVMDAGGGGA 319 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 +RIS Y PVWSP+GDLIAFT+ SG +F IGVM+ DGS ER+L E +++ P+++ Sbjct: 320 RRISFGN-GRYATPVWSPRGDLIAFTRISGGRFGIGVMRPDGSGERILSEGWSMEGPSFA 378 Query: 399 PSGRSLIFSRK------KDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 P+GR L F R+ + G ++L ID+ G NE I TP A+DP W Sbjct: 379 PNGRVLAFYRESQARDARGGGYSARLSMIDIAGFNERQIVTPTDATDPSW 428 >gi|254564124|ref|YP_003071219.1| protein tolB [Methylobacterium extorquens DM4] gi|254271402|emb|CAX27415.1| protein tolB precursor [Methylobacterium extorquens DM4] Length = 446 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 171/412 (41%), Positives = 248/412 (60%), Gaps = 7/412 (1%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 A +++ S + P+ IA F LG V+ V++ +L+RS F + + F + Sbjct: 33 RAQLQLRIGSGAFQPMPIAVADFAGDASLGTLVASVITNNLRRSGYFTPLEKGRFPE--- 89 Query: 93 NP--DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 NP D+ P F+ W G Q LVTGRV ++ RL V FRLWDV +QI G+++ + A+ Sbjct: 90 NPSFDAAPNFEAWKGAGVQALVTGRVGRDASGRLTVAFRLWDVASGQQITGQQYGTDVAN 149 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R+ H +SD +Y +TG F+SR+ FV ES + L VMD+DGAN+R LT Sbjct: 150 ARRTGHLVSDAVYTKVTGLGPWFDSRVAFVDESGPKENRRKRLMVMDQDGANVRALTGGG 209 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D + PR+SP Q +A+ T +V ++D + + +GNF SM +PRFS +G+ Sbjct: 210 DVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGKR-QTVGNFASMSASPRFSPDGR 268 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++SVQ+ DI +VDL S A +T L I+ S SY+PD SQIVFESDR G +Q+YV Sbjct: 269 RLVMSVQQGGNADIVTVDLASKAQTPVTQGLAIDTSPSYAPDGSQIVFESDRGGSQQIYV 328 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS+ +R+S E S P WSP+GDLIAFT+ FAI VMK DGS ER+L E Sbjct: 329 MGADGSNPRRLSFG-EGSASQPAWSPRGDLIAFTRQRKGGFAICVMKPDGSGERVLTEGF 387 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + ++PT++P+G+ ++F R G G KLY +D+ G+ E + TP++ASDP W Sbjct: 388 HNESPTFAPNGQYVMFFRDPGGQGGGKLYMVDITGKVEQPVPTPSFASDPTW 439 >gi|144897899|emb|CAM74763.1| TOLB PROTEIN PRECURSOR [Magnetospirillum gryphiswaldense MSR-1] Length = 451 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 177/447 (39%), Positives = 262/447 (58%), Gaps = 22/447 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEV 68 ++I L L ++G + A V++ N P+ IA + + G ++ V Sbjct: 5 IRIALVGLFAVLGLLAAPAAMAEVRIDITRGNMKPLPIAVPELFGAQPAEVQAGRDIARV 64 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+ DL+RS +F I Q +F Q + + PRF DW + A+ LV+G++ G L +EF Sbjct: 65 VAADLERSGLFKPIDQRAFIQNAASLQAGPRFADWRQINAEALVSGKIEVSGDGDLMIEF 124 Query: 129 RLWDVKDRKQIIGKKF-------FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RLWDV Q+IG ++ +P WR+ AH I+D IY+ +TGE G F+++++++S Sbjct: 125 RLWDVFSETQMIGTRYNIAGKDIRRNPNLWRRAAHQIADAIYKRVTGEDGYFDTQLIYIS 184 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES K L +MD+DG N R+LT D +L PRFSP +++ Y +Y RVY+ Sbjct: 185 ESGPKNDRKKRLAIMDQDGENHRFLTSGEDLVL-TPRFSPTAREITYMSYF-RGTPRVYI 242 Query: 242 MDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + +ID A + + G+F M APRFS +G + ++S+ +D +IY ++L + RLTN Sbjct: 243 L--QIDTARRELLGDFPGMTFAPRFSPDGNKVIMSLSQDGNTEIYEMNLLTRQKARLTNH 300 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S SYSPDS+++VF SDR G +QLY M ++GS RIS + Y PVWSP+GDL Sbjct: 301 PSIDTSPSYSPDSTRVVFNSDRGGAQQLYTMNADGSGVARISF-GDGRYATPVWSPRGDL 359 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-----G 415 IAFTK G +F IGVM+ DGS ERLL + ++ PTW+P+GR L F ++ D+ Sbjct: 360 IAFTKMKGGEFFIGVMRPDGSDERLLAQGYLVEGPTWAPNGRVLAFWKETASDSQGRGGT 419 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQW 442 +KLY+IDL G NE + TP SDP W Sbjct: 420 AKLYTIDLTGFNERQVITPLDGSDPAW 446 >gi|163854156|ref|YP_001642199.1| beta-propeller repeat-containing to-pal system protein TolB [Methylobacterium extorquens PA1] gi|218533101|ref|YP_002423917.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium chloromethanicum CM4] gi|240141615|ref|YP_002966095.1| protein tolB precursor [Methylobacterium extorquens AM1] gi|163665761|gb|ABY33128.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium extorquens PA1] gi|218525404|gb|ACK85989.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium chloromethanicum CM4] gi|240011592|gb|ACS42818.1| protein tolB precursor [Methylobacterium extorquens AM1] Length = 446 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 170/412 (41%), Positives = 248/412 (60%), Gaps = 7/412 (1%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 A +++ S + P+ IA F LG V+ V++ +L+RS F + + F + Sbjct: 33 RAQLQLRIGSGAFQPMPIAVADFAGDASLGTLVASVITNNLRRSGYFTPLEKGRFPE--- 89 Query: 93 NP--DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 NP D+ P F+ W G Q LVTGRV ++ RL V FRLWDV +QI G+++ + A+ Sbjct: 90 NPSFDAAPNFEAWKGAGVQALVTGRVGRDASGRLTVAFRLWDVASGQQITGQQYGTDVAN 149 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R+ H +SD +Y +TG F+SR+ FV ES + L VMD+DGAN+R LT Sbjct: 150 ARRTGHLVSDAVYTKVTGLGPWFDSRVAFVDESGPKENRRKRLMVMDQDGANVRALTGGG 209 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D + PR+SP Q +A+ T +V ++D + + +GNF SM +PRFS +G+ Sbjct: 210 DVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGKR-QTVGNFASMSASPRFSPDGR 268 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++SVQ+ DI +VD+ S A +T L I+ S SY+PD SQIVFESDR G +Q+YV Sbjct: 269 RLVMSVQQGGNADIVTVDIASKAQTPVTQGLAIDTSPSYAPDGSQIVFESDRGGSQQIYV 328 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS+ +R+S E S P WSP+GDLIAFT+ FAI VMK DGS ER+L E Sbjct: 329 MGADGSNPRRLSFG-EGSASQPAWSPRGDLIAFTRQRKGGFAICVMKPDGSGERVLTEGF 387 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + ++PT++P+G+ ++F R G G KLY +D+ G+ E + TP++ASDP W Sbjct: 388 HNESPTFAPNGQYVMFFRDPGGQGGGKLYMVDITGKVEQPVPTPSFASDPTW 439 >gi|323138231|ref|ZP_08073303.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis sp. ATCC 49242] gi|322396483|gb|EFX99012.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis sp. ATCC 49242] Length = 435 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 164/422 (38%), Positives = 258/422 (61%), Gaps = 9/422 (2%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 F P S +++ + P+++A F+ DE ++ V + +RS I + Sbjct: 22 FTPASAGRIIEL--KGGGFQPINVAVAPFIG-DEAARTITSVTMNNFKRSVFLKPIDGAT 78 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 + +PD P + ++ AQ ++TGR + G RL+ EFRL+DV +Q+ G+++ + Sbjct: 79 VGED-GSPDQTPNLDAYKAINAQFVLTGRSQRTGDGRLKTEFRLFDVTTGEQVAGQQYVT 137 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 A+ R++AH +SD ++ +TGEKG F++R++FV ES + L +MD+DGAN+RYL Sbjct: 138 ESANMRRVAHLLSDAVFTRVTGEKGFFDTRVVFVDESGSKDKRRKRLAMMDQDGANVRYL 197 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRF 265 T D ++ PRFSP+ V Y ++ + +V LM+ I+ + + + GNF M +PRF Sbjct: 198 TRG-DDLVVTPRFSPSSLDVTYMAFNSDGEPKVLLMN--IESSQREVVGNFPGMTFSPRF 254 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ ++S+ + + ++Y++DL+S T RLT+T I+ + S+SPD S+I FESDR G Sbjct: 255 SPDGQKIIMSLSQGSSTNLYTMDLRSRTTTRLTDTSAIDTAPSFSPDGSRIAFESDRGGS 314 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 +Q+YVM ++G + KRIS Y PVWSP+GD IAFTK +G F+IGVMK DGS ER+ Sbjct: 315 QQIYVMGAHGGEAKRISFGG-GRYSTPVWSPKGDYIAFTKQNGGNFSIGVMKTDGSGERI 373 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 L E + + PTW+P+G L+F R+ G G K+Y +D+ GR E + TP YASDP W Sbjct: 374 LTEGFHNEGPTWAPNGLFLMFFRESGGAGGPKIYMVDVFGRTELQVPTPGYASDPAWGPL 433 Query: 446 MD 447 D Sbjct: 434 QD 435 >gi|197106553|ref|YP_002131930.1| periplasmic component of the Tol biopolymer transport system [Phenylobacterium zucineum HLK1] gi|196479973|gb|ACG79501.1| periplasmic component of the Tol biopolymer transport system [Phenylobacterium zucineum HLK1] Length = 430 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 180/428 (42%), Positives = 257/428 (60%), Gaps = 8/428 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + L L + G A ++V N + P+ IA F + G +++V+S +LQ Sbjct: 6 LMLALACLFAAGLTVQPARAEIEVNVNRGDVQPLPIAVPAFGG--QQGADIAQVISANLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F + +F ++ N PRF DW + AQ LV G+V EG RLRV+FRLWDV Sbjct: 64 RSGLFQPLDPAAFIERDVNIAVQPRFADWKQINAQALVNGQVTVEGG-RLRVDFRLWDVF 122 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q++G +F SSP +WR++AH ISD +Y+ +TGEKG F++R++FV+ES G L Sbjct: 123 AEQQLLGLQFTSSPENWRRVAHKISDAVYERLTGEKGYFDTRVVFVAESGPRGKRVKRLA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DGAN YLT I+ PRFS N Q++ Y + D ++L + R + +G Sbjct: 183 IMDQDGANPSYLT-DGSYIVMTPRFSSNSQEITYMSL-RPDGSSIWLFNLETGRR-ESLG 239 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF+ M+ APRFS +G R SV++ DIY + L S ++ RLT+ I+ S S+SPD Sbjct: 240 NFQGMVFAPRFSPDGGRVAFSVERGGNSDIYVMSLSSRSSTRLTSDPSIDTSPSFSPDGQ 299 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR G QLYVM ++GS+ +RIS + Y PVWSP G+ IAFTK +G +F IG Sbjct: 300 RIVFNSDRSGSAQLYVMGADGSNPRRISF-GQGRYTTPVWSPTGEFIAFTKQTGGQFHIG 358 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM+ DGS ERLL + PTW+P+GR L+FSR+ G +L+S+D+ GR + P Sbjct: 359 VMRADGSDERLLTSSYLDEGPTWAPNGRVLMFSRETPGGA-PRLWSVDVTGRVLQPMPYP 417 Query: 435 AYASDPQW 442 SDP W Sbjct: 418 GSGSDPAW 425 >gi|23015569|ref|ZP_00055341.1| COG0823: Periplasmic component of the Tol biopolymer transport system [Magnetospirillum magnetotacticum MS-1] Length = 444 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 171/431 (39%), Positives = 255/431 (59%), Gaps = 13/431 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQRS 76 V++G A V++ P+ IA +F + +G ++ VVS DL+RS Sbjct: 13 FVILGVVAALPASAEVRIDITRGQMKPLPIAIPEFAGASAQDNRVGADIARVVSADLERS 72 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I +F Q + + PRF DW ++ A+ LV+G++ R+RVEFRLWDV + Sbjct: 73 GLFKPIDPKAFIQNAASLQAGPRFPDWKAINAEALVSGKIESGADGRIRVEFRLWDVFNE 132 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 + G +SPA WR+++H ++D IY+ +TGE G F+++I++++ES K L +M Sbjct: 133 AYMTGWTLSASPADWRRLSHKVADAIYKRVTGEDGYFDTQIVYIAESGPKNDRKKRLSIM 192 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DG N R+LT + +L PRFSP+ +++ Y +Y + + RVY+ + R + +GNF Sbjct: 193 DQDGENHRFLTDGSELVL-TPRFSPSAREITYLSY-FKGVPRVYIFNLDTGRR-ESLGNF 249 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M APRFS +G + + S+ + +IY ++L + +LT I+ + SYSPD QI Sbjct: 250 PGMTFAPRFSPDGNKVIFSMAESGNTEIYEMNLLTRQKRQLTYNPAIDTAPSYSPDGQQI 309 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VFESDR G +QLYVM ++G + RIS + Y PVWSP+GDLIAFTK G +F IGVM Sbjct: 310 VFESDRGGGQQLYVMGADGGNATRISFG-DGRYATPVWSPRGDLIAFTKQKGGQFFIGVM 368 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-----KLYSIDLNGRNETLI 431 + DGS ERLL E ++ PTW+P+GR L F R+ D +LY+IDL G NE ++ Sbjct: 369 RTDGSGERLLAEGFLVEGPTWAPNGRVLSFFRESPSDERGRGQVVRLYTIDLTGVNERVL 428 Query: 432 NTPAYASDPQW 442 TP SDP W Sbjct: 429 LTPIDGSDPAW 439 >gi|296447816|ref|ZP_06889729.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus trichosporium OB3b] gi|296254675|gb|EFH01789.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus trichosporium OB3b] Length = 438 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/406 (40%), Positives = 247/406 (60%), Gaps = 5/406 (1%) Query: 42 SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 S + PV++A F DE ++ V+ + RS I ++ D P Sbjct: 38 SGGFQPVAVAVAPFAG-DEAARTLTSVIVNNFNRSVFLRPIEPGGRPEQAAASDGAPELD 96 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 + SLGAQ +VTGR + RL+ EFRL+DV +Q G+++ + A R++AH +SD Sbjct: 97 LYRSLGAQYVVTGRAQRGPDGRLKTEFRLFDVATGEQAAGQQYVTEAAFARRVAHLVSDA 156 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 ++ ITGEKG F++R++FV ES + L +MD+DGAN+RYL+ D ++ PRFSP Sbjct: 157 VFTRITGEKGFFDTRVVFVDESGPKERRRKRLAIMDQDGANVRYLS-RGDDLVVTPRFSP 215 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + Q V Y ++ D +V L+ + + +GNF M APRFS +G++ ++S+ + + Sbjct: 216 SSQDVTYMSFGAGDP-KVLLLSIESGQR-EVVGNFPGMTFAPRFSPDGQKIVMSLSQGAS 273 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++Y++DL+S T RLT+T I+ S SYSP ++IVFESDR G +Q+YVM +NG +RI Sbjct: 274 TNLYAMDLRSRTTTRLTDTNAIDTSPSYSPSGAEIVFESDRGGSQQIYVMSANGGGARRI 333 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S Y PVWSP+GD IAFT+ S F IGVMK DGS ER+L E + + PTW+P+G Sbjct: 334 SFGP-GHYSTPVWSPKGDYIAFTRQSSGAFGIGVMKPDGSGERILTEGFHNEGPTWAPNG 392 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 L+F R+ G +G+K++ +D+ GR+E + TP+YASDP W D Sbjct: 393 LFLMFFREPGGQSGAKIHMVDVFGRSEFPVPTPSYASDPSWGPLQD 438 >gi|209965095|ref|YP_002298010.1| translocation protein TolB [Rhodospirillum centenum SW] gi|209958561|gb|ACI99197.1| protein TolB precursor [Rhodospirillum centenum SW] Length = 451 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 173/414 (41%), Positives = 255/414 (61%), Gaps = 30/414 (7%) Query: 47 PVSIAFTKFVSIDELGG---------KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI 97 P+ IA T F LGG ++S V++ +L+RS +F + F I P+ + Sbjct: 45 PMPIAITTF-----LGGTPQEQTVARQISSVITANLERSGLFQPLDPARF---IQTPEQL 96 Query: 98 ----PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 PRF DW +GAQ LV G V + RLRV+FRL+DV KQ+ G +F+ WR+ Sbjct: 97 ASAPPRFADWRLIGAQALVAGGVQAQPDGRLRVQFRLFDVVYGKQLTGLAYFTQAEGWRR 156 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 +AH ISD IY+ +TGE+G F++R+++++ES + L +MD+DG N R+LT R + Sbjct: 157 VAHIISDAIYKRLTGEEGYFDTRVVYIAESGPANQRVKRLAIMDQDGENNRFLTDGRVLV 216 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L PRFSP Q++ Y +Y + RVYL + R + +G+F M APRFS +G + + Sbjct: 217 L-TPRFSPTAQEITYLSYFNNKP-RVYLFNIDTGRQ-ELLGDFPGMTFAPRFSPDGNQVI 273 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +S+ + DIY++DL++ RLT+ I+ + SYSPD QIVFESDR G +QLY M + Sbjct: 274 MSLAQSGNTDIYTLDLRTRRQTRLTDHPGIDTAPSYSPDGKQIVFESDRGGTQQLYTMNA 333 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +GS+ KRI+ + Y PVWSP+GDLIAFT+ +G +F IGV++ DG+ ERLL E +++ Sbjct: 334 DGSNVKRITFG-QGRYATPVWSPRGDLIAFTRLNGGRFYIGVIRPDGTGERLLTEAFHVE 392 Query: 394 APTWSPSGRSLIFSRKKDGDTG-----SKLYSIDLNGRNETLINTPAYASDPQW 442 PTW+P+GR L++ ++K G S+L++IDL G NE + T ASDP W Sbjct: 393 GPTWAPNGRVLMYFKEKPVGAGARQRQSRLFTIDLTGVNERQMVTATDASDPAW 446 >gi|83312310|ref|YP_422574.1| translocation protein TolB [Magnetospirillum magneticum AMB-1] gi|118574583|sp|Q2W2B0|TOLB_MAGMM RecName: Full=Protein tolB; Flags: Precursor gi|82947151|dbj|BAE52015.1| Periplasmic component of the Tol biopolymer transport system [Magnetospirillum magneticum AMB-1] Length = 447 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 169/432 (39%), Positives = 256/432 (59%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 + V++G A V++ P+ IA F + +G ++ VVS DL+R Sbjct: 15 VFVILGVAAVLPAQAEVRIDITRGQMKPLPIAIPDFAGASAQDNRMGADIARVVSADLER 74 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F I +F Q + + PRF DW ++ A+ LV+G++ R+RVEFRLWDV + Sbjct: 75 SGLFKPIDPKAFIQNAASLQAGPRFPDWKAINAEALVSGKIESGADGRVRVEFRLWDVFN 134 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + G +SP WR+++H ++D IY+ +TGE G F+++I++++ES K L + Sbjct: 135 EAYMTGWTLSASPQDWRRLSHKVADAIYKRVTGEDGYFDTQIVYIAESGPKNDRKKRLSI 194 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DG N R+LT + +L PRFSP+ +++ Y +Y + + RVY+ + R + +GN Sbjct: 195 MDQDGENHRFLTDGSELVL-TPRFSPSAREITYLSY-FKGVPRVYIFNLDTGRR-ESLGN 251 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F M APRFS +G + + S+ ++ +IY ++L + +LT I+ + SYSPD Q Sbjct: 252 FPGMTFAPRFSPDGNKVVFSMAENGNTEIYEMNLLTRQKRQLTMNPAIDTAPSYSPDGQQ 311 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 IVFESDR G +Q+Y M ++GS+ +RIS + Y PVWSP+GDLIAFTK G +F IGV Sbjct: 312 IVFESDRGGGQQIYTMSADGSNPQRISF-GDGRYGTPVWSPRGDLIAFTKQKGGQFFIGV 370 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-----KLYSIDLNGRNETL 430 M+ DGS ERLL E ++ PTW+P+GR L F R+ D +LY+IDL G NE + Sbjct: 371 MRTDGSGERLLAEGFLVEGPTWAPNGRVLSFFRESPSDERGRGQVVRLYTIDLTGVNERV 430 Query: 431 INTPAYASDPQW 442 + TP SDP W Sbjct: 431 LLTPVDGSDPAW 442 >gi|221236273|ref|YP_002518710.1| translocation protein TolB [Caulobacter crescentus NA1000] gi|220965446|gb|ACL96802.1| TolB protein [Caulobacter crescentus NA1000] Length = 443 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 174/427 (40%), Positives = 259/427 (60%), Gaps = 14/427 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 G F T A ++V N+ P+ IA F S G ++++V++ +L+RS +F ++ Sbjct: 27 GAAFVTPAAAQIEVDINAGAVKPLPIAIPVF-SGSTRGAEIAQVITGNLERSGLFQPLNV 85 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 K+ + + PRF DW S GAQ L+ G+V LRV+FRLWDV ++Q++G +F Sbjct: 86 AGVPDKLADVNVQPRFPDWQSTGAQALINGQVTVGADGGLRVDFRLWDVFSQQQLLGLQF 145 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S+P +WR++AH ISD +Y+ +TGEKG F++R+ FV+ES L +MD+DGAN + Sbjct: 146 SSTPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQ 205 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT I+ PRFS Q++ Y +YL++ R + +G F M+ APR Sbjct: 206 YLT-DGSYIVMTPRFSSTSQELTYMALRPTGS-SIYLLNLETSRQ-ETVGKFPGMVFAPR 262 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + SV+++ DIY +DL+S AT R+T I+ S S+SPD ++IVF SDR G Sbjct: 263 FSPDGSKVAFSVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGG 322 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + Q+YVM ++GS +RIS Y PVWSP+GD IAFTK +G +F IGVM+ DG ER Sbjct: 323 QAQIYVMNTDGSGVRRISYGG-GRYTTPVWSPRGDFIAFTKQTGGEFHIGVMRADGGDER 381 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAY---ASDP 440 LL + PTW+P+GR L+F R +G +G+ +L+++D+ GR ++ AY ASDP Sbjct: 382 LLTTSYLDEGPTWAPNGRVLMFFR--EGPSGNPRLWTVDITGR---ILRPAAYSGSASDP 436 Query: 441 QWVGFMD 447 W +D Sbjct: 437 AWSPLLD 443 >gi|294085866|ref|YP_003552626.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665441|gb|ADE40542.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 431 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 174/434 (40%), Positives = 254/434 (58%), Gaps = 17/434 (3%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDL 73 ++ V++ G HA ++V +P IA F D E+G ++S ++S DL Sbjct: 1 MIMTVMVAGV----AHAQLRVVITEGQVAPTPIAIADFTGPDGEVTEIGRQMSAIISNDL 56 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + S +F I +F P P F DW +GA+ L+ G + L+VEF LWDV Sbjct: 57 ESSGLFQPIDSAAFISPPKAPSIRPNFSDWTPVGAKGLLVGSAYTDENGMLQVEFVLWDV 116 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +K I S PA R+++H I+D +Y+ TG+ G F+++I++V+ES L Sbjct: 117 VTQKDITQGSGNSDPAGLRQLSHKIADYVYEEFTGDTGYFDTQIVYVAESGSQSQRVKRL 176 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD+DG N RYLT D +L PRFSP +VAY Y +E+ VYL+D R +R+ Sbjct: 177 AIMDQDGHNHRYLTNGLDLVL-TPRFSPTANEVAYLNYFNEE-PNVYLLDVFTART-ERL 233 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 G+F M APRF +G + ++S+ KD DIY +D+++ + +LT + I+ S SYSPD Sbjct: 234 GSFPGMTFAPRFGPDGDKLIMSLAKDGLTDIYEMDMRTQSITQLTKSASIDTSPSYSPDG 293 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +IVF SDR G +QLYVM ++GS+ KRIS + Y PVWSP+GD++AFTK +G F I Sbjct: 294 KRIVFNSDRGGSQQLYVMNADGSNVKRISY-GDGRYATPVWSPRGDIVAFTKMTGGTFYI 352 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTG-SKLYSIDLNGRNE 428 GVM DG+ ERLL + ++ PTW+P+GR L++ + K DG G + LY +D+ G NE Sbjct: 353 GVMNIDGTGERLLAQGFLVEGPTWAPNGRVLMYFKQQPFKDDGSGGKTALYRVDITGFNE 412 Query: 429 TLINTPAYASDPQW 442 I TP+ ASDP W Sbjct: 413 RRIITPSDASDPAW 426 >gi|16127460|ref|NP_422024.1| translocation protein TolB [Caulobacter crescentus CB15] gi|32699717|sp|Q9A3H4|TOLB_CAUCR RecName: Full=Protein tolB; Flags: Precursor gi|13424914|gb|AAK25192.1| tolB protein [Caulobacter crescentus CB15] Length = 432 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 174/427 (40%), Positives = 259/427 (60%), Gaps = 14/427 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 G F T A ++V N+ P+ IA F S G ++++V++ +L+RS +F ++ Sbjct: 16 GAAFVTPAAAQIEVDINAGAVKPLPIAIPVF-SGSTRGAEIAQVITGNLERSGLFQPLNV 74 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 K+ + + PRF DW S GAQ L+ G+V LRV+FRLWDV ++Q++G +F Sbjct: 75 AGVPDKLADVNVQPRFPDWQSTGAQALINGQVTVGADGGLRVDFRLWDVFSQQQLLGLQF 134 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S+P +WR++AH ISD +Y+ +TGEKG F++R+ FV+ES L +MD+DGAN + Sbjct: 135 SSTPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQ 194 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT I+ PRFS Q++ Y +YL++ R + +G F M+ APR Sbjct: 195 YLT-DGSYIVMTPRFSSTSQELTYMALRPTGS-SIYLLNLETSRQ-ETVGKFPGMVFAPR 251 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + SV+++ DIY +DL+S AT R+T I+ S S+SPD ++IVF SDR G Sbjct: 252 FSPDGSKVAFSVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGG 311 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + Q+YVM ++GS +RIS Y PVWSP+GD IAFTK +G +F IGVM+ DG ER Sbjct: 312 QAQIYVMNTDGSGVRRISYGG-GRYTTPVWSPRGDFIAFTKQTGGEFHIGVMRADGGDER 370 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAY---ASDP 440 LL + PTW+P+GR L+F R +G +G+ +L+++D+ GR ++ AY ASDP Sbjct: 371 LLTTSYLDEGPTWAPNGRVLMFFR--EGPSGNPRLWTVDITGR---ILRPAAYSGSASDP 425 Query: 441 QWVGFMD 447 W +D Sbjct: 426 AWSPLLD 432 >gi|170741556|ref|YP_001770211.1| beta-propeller repeat-containing to-pal system protein TolB [Methylobacterium sp. 4-46] gi|168195830|gb|ACA17777.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium sp. 4-46] Length = 442 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 176/432 (40%), Positives = 251/432 (58%), Gaps = 10/432 (2%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L LVL G P + ++V + A + P+ IA F L VS +V+ +L+RS Sbjct: 17 LWLFLVLTG---PAAAQLNLRVGSGGA-FQPMPIAVADFAGDPSLAPLVSGIVANNLKRS 72 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F I + F + N D+ P F W GAQ LVTGRV ++ ++ EFRLWDV Sbjct: 73 GYFVPIDRARFPE-TPNFDAAPNFAAWKEAGAQGLVTGRVTRDASGGVKAEFRLWDVLSG 131 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+IG+++ + R++ H ISD +Y ITG G F++R+ FV ES + L +M Sbjct: 132 QQMIGQQYAGGSGNSRRMGHLISDAVYTKITGIGGFFDTRVAFVDESGSKERRRKRLAIM 191 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN+RYLT S + + PR+SP Q + Y + RV +++ A + I Sbjct: 192 DQDGANVRYLT-SGEAAVVAPRYSPATQDITYMSQTTGQQPRVQVINLETG-ARQVIPTH 249 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +PRFS +G+R ++S Q IY +DL S A R+TN I+ S S+SPD +I Sbjct: 250 AEMSTSPRFSPDGRRIVMSDQDGGNASIYVMDLASKAQTRITNANAIDTSPSFSPDGREI 309 Query: 317 VFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 VFESDR G++Q+YVM ++GS+ +RIS D AS P WSP+GD IAFT+ FAI + Sbjct: 310 VFESDRGGQQQIYVMGADGSNPRRISFGDGSAS--QPAWSPRGDYIAFTRQRRGSFAICI 367 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 MK DGS ER+L E + + PTW+P+G+ ++F R G G KLY +D+ GR E + TP+ Sbjct: 368 MKPDGSGERVLTEGFHNEGPTWAPNGQYVMFFRDPGGQAGGKLYMVDVTGRVEQPVPTPS 427 Query: 436 YASDPQWVGFMD 447 YASDP W +D Sbjct: 428 YASDPTWSPLLD 439 >gi|260428940|ref|ZP_05782917.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp. SE45] gi|260419563|gb|EEX12816.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp. SE45] Length = 440 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 173/417 (41%), Positives = 254/417 (60%), Gaps = 18/417 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +++ P++ A FV+ + +++ VV+ DL + +F I +D+ +I Sbjct: 28 LRIEITEGTIEPMAYAVPDFVAETPGAQQYAQQIARVVADDLTGTGLFREIPRDAHISRI 87 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPAS 150 T+ +S +F DW ++ A VL+TG V +EG R+ V+FR+WDV ++ G +F ++ Sbjct: 88 TSFESPVQFADWKAINALVLLTGAVSEEGG-RISVKFRVWDVFAGTELGDGMQFAATADG 146 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH ++D +Y +TGE G F+SR++FVSES L +MD DGAN++YLT SR Sbjct: 147 WRRLAHKVADQVYSRLTGETGYFDSRVVFVSESGPKEQRAKRLAIMDYDGANVQYLTDSR 206 Query: 211 DQILFEPRFSPNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 I+ PRFSPN +V Y +Y+ + +L V + +RI R+ + M APRFS Sbjct: 207 S-IVLAPRFSPNGDRVLYTSYETGEPQIHVLNVGAVQSRILRSAAGV-----MSFAPRFS 260 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G R + SV + DIY +D+ S A+ +LT T I + S+SPD S+IVFESDR G + Sbjct: 261 PDGSRVVYSVTQGSNTDIYMMDVASGASTQLTATPAIETAPSFSPDGSRIVFESDRSGTQ 320 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 QLYVM + G + RIS + Y PVWSP+GD+IAFTK +F IGVM+ DGS+ERLL Sbjct: 321 QLYVMPAGGGEATRISF-GQGRYGTPVWSPRGDMIAFTKQHQGRFHIGVMRTDGSEERLL 379 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 + PTW+P+GR L+FSR+ G G S LY++D+ GR T + TPA ASDP W Sbjct: 380 TASPLDEGPTWAPNGRVLMFSRETLGAQGTSSLYTVDVAGRKLTRVRTPAGASDPSW 436 >gi|167648382|ref|YP_001686045.1| translocation protein TolB [Caulobacter sp. K31] gi|167350812|gb|ABZ73547.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter sp. K31] Length = 441 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 173/423 (40%), Positives = 254/423 (60%), Gaps = 14/423 (3%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 PT A ++V + P+ +A F S G +++V+S +L+RS +F ++ + Sbjct: 29 PTVARAQIEVDIDKGAVKPLPVAIPAF-SGGGRGADIAQVISGNLERSGLFQPLNVANVA 87 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 K+ + + PRF DW + GAQ L+ G+V LRV+FRLWD ++Q++G +F S+ Sbjct: 88 DKLADVNVQPRFPDWQATGAQALINGQVTVGADGVLRVDFRLWDTFSQQQLLGLQFTSTA 147 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +WR++AH ISD +Y+ +TGEKG F++R++FV+ES L +MD+DGAN +YLT Sbjct: 148 ENWRRVAHKISDAVYERLTGEKGYFDTRVVFVAESGGKLTRVKRLAIMDQDGANPQYLTD 207 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 I+ PRFS Q++ Y +YL + R + IG F M+ APRFS + Sbjct: 208 G-SYIVMTPRFSSTSQEITYMALRPTGS-SIYLTNLETART-ETIGKFPGMVFAPRFSPD 264 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + SV+K DIY +DL+S + R+T I+ S S+SPD S+IVF SDR G+ QL Sbjct: 265 GGKVAFSVEKGGNSDIYVMDLRSRQSTRITTDPAIDTSPSFSPDGSKIVFNSDRGGQAQL 324 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y+M ++GS +RIS Y PVWSP+GD IAFTK +G +F IGVMK DG ERLL Sbjct: 325 YIMNADGSGVRRISYGG-GRYTTPVWSPRGDFIAFTKQTGGEFHIGVMKVDGGDERLLTT 383 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAY---ASDPQWVG 444 + PTW+P+GR L+FSR +G +G S+L+++D+ GR ++ AY ASDP W Sbjct: 384 SYLDEGPTWAPNGRVLMFSR--EGSSGNSRLWTVDITGR---ILRPAAYTGAASDPAWSP 438 Query: 445 FMD 447 +D Sbjct: 439 LLD 441 >gi|83950088|ref|ZP_00958821.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM] gi|83837987|gb|EAP77283.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM] Length = 440 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 169/404 (41%), Positives = 248/404 (61%), Gaps = 13/404 (3%) Query: 47 PVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV + +EL ++ VV+ DL + +F ISQD+F ++T+ S +F D Sbjct: 38 PMPFAVPDFVPESGAAEELSRNIARVVAADLSGTGLFREISQDAFISRVTSFSSPVQFAD 97 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDD 161 W ++ AQ LVTG V +G R+ +FR+WDV +++ G +F + WR+IAH ++D Sbjct: 98 WKAINAQALVTGAVAVDGTGRVTAKFRVWDVFAGQELGSGLQFVGTVDGWRRIAHKVADQ 157 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITGE G F+SR++FVSE+ L +MD DGAN++YLT S I+ PRFSP Sbjct: 158 VYSRITGEGGYFDSRVVFVSETGPKDNRAKRLSIMDYDGANLKYLTDS-SSIVLAPRFSP 216 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR--SMILAPRFSSNGKRALISVQKD 279 +V Y +Y+ RVY++D + +R+ + +M APRFS +G+ + S+ + Sbjct: 217 TGDRVLYTSYE-SGFPRVYVLD--VASVSRRLLESQDGTMSFAPRFSPDGRTVVYSLIQG 273 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DIY++D+ + A++RLTN I + S+SPD QIVFESDR G Q+YVM + G + + Sbjct: 274 GNTDIYTMDIATGASQRLTNAPSIETAPSFSPDGRQIVFESDRSGTNQIYVMNAQGGEAR 333 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 RIS Y PVWSP+GD IAFTK S +F IGVM+ +G +ERLL + PTWSP Sbjct: 334 RIS-GGTGQYGTPVWSPRGDYIAFTKQSKGRFHIGVMRVNGEEERLLTASFLDEGPTWSP 392 Query: 400 SGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 +GR ++F+R+ G G S+L+S+D+ GRN + TP ASDP W Sbjct: 393 NGRVIMFTRETQGAQGQSRLWSVDITGRNLRQVQTPGGASDPSW 436 >gi|126728386|ref|ZP_01744202.1| translocation protein TolB precursor [Sagittula stellata E-37] gi|126711351|gb|EBA10401.1| translocation protein TolB precursor [Sagittula stellata E-37] Length = 432 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 172/431 (39%), Positives = 255/431 (59%), Gaps = 9/431 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDL 73 + + G P +++ + P+ IA FV+ E ++S VV++DL Sbjct: 1 MMAFAVFQGVLPAVAQEPLRLEIDRGIVEPMPIAIPSFVAETPAAQEYADQLSRVVAEDL 60 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + +F I +D+ +++ + +F DW ++ AQ LVTG V +G R+ V+FR WDV Sbjct: 61 VGTGLFREIPRDAHISRVSTFAAPVQFADWKAINAQALVTGAVSADGSGRVVVKFRAWDV 120 Query: 134 -KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 +R+ G +F SS WR++AH ++D +Y +TGE F+SR++FVSE+ + Sbjct: 121 FAERELGEGMQFASSADGWRRLAHKVADQVYSRLTGESPYFDSRVVFVSETGPKDQRQKR 180 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD DGAN++YLT S I+ PRFSP +V Y +Y R++++D ++ Sbjct: 181 LAIMDYDGANVQYLTDS-SSIVLAPRFSPTGGQVLYTSYA-TGFPRIHILDVGAVQSRIL 238 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 N M APRFS +G+ + S+ + DI+++D+ S AT RLT+T I + S+SPD Sbjct: 239 QANEGVMSFAPRFSPDGRMVVYSMTQGSNTDIWAMDVASGATRRLTSTPAIETAPSFSPD 298 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S+IVFESDR G +QLYVM ++G + RIS E Y PVWSP+GD IAFTK + +F Sbjct: 299 GSRIVFESDRSGTQQLYVMPASGGEGTRISFG-EGRYGTPVWSPRGDRIAFTKQNKGRFH 357 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLI 431 IGVM DGS+ERLL + PTW+P+GR ++FSR+ G G S LYS+D++GRN + Sbjct: 358 IGVMNTDGSEERLLTASFLDEGPTWAPNGRVIMFSRETQGAQGASALYSVDISGRNLRRV 417 Query: 432 NTPAYASDPQW 442 TPA ASDP W Sbjct: 418 RTPAGASDPSW 428 >gi|170747178|ref|YP_001753438.1| beta-propeller repeat-containing to-pal system protein TolB [Methylobacterium radiotolerans JCM 2831] gi|170653700|gb|ACB22755.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium radiotolerans JCM 2831] Length = 445 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 169/426 (39%), Positives = 250/426 (58%), Gaps = 5/426 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + L+ A +++ N+ P+ IA F L G VS VV+ DL+RS Sbjct: 18 LIAVFTLLTAVLAGPAQAQLQLRIGGGNFQPMPIAIADFGGDPSLAGLVSGVVTNDLRRS 77 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F + F ++ N D+ P F+ W + G Q LVTGRV++EG R++VEFRLWDV + Sbjct: 78 GYFTPLDHARFPEQ-PNFDAAPNFEKWRATGVQGLVTGRVVREG-GRVKVEFRLWDVTNG 135 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ G+++ + A+ R+ H ISD +Y ITG F+SRI FV E+ + L VM Sbjct: 136 QQMTGQQYGTDAANVRRTGHLISDGVYTKITGLGPWFDSRIAFVDETGPKENRRKRLMVM 195 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN+R +T I+ PR+SP Q +A+ RV +++ + +GN Sbjct: 196 DQDGANVRAITTGEMSIV-APRYSPATQDIAFMAQATGHQPRVQMINLETGSR-QALGNV 253 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 SM +PRFS +G++ ++SVQ+ DI ++DL S A +TN + I+ S +YSPD SQI Sbjct: 254 DSMSASPRFSPDGRKIVMSVQQGGNADIVTMDLASKAQRSITNGMAIDTSPTYSPDGSQI 313 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 FESDR G +Q+YVM ++GS+ RI+ S P +SP+GDLIA+T+ FAI V Sbjct: 314 AFESDRGGSQQVYVMGADGSNPHRITFGP-GSASQPAFSPRGDLIAYTRQRNGGFAICVS 372 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L E + + PT++P+G+ ++F R G G KL+ +D+ G+ E + TPAY Sbjct: 373 KPDGSGERVLTEGFHNEGPTFAPNGQYVLFFRDPGGQGGGKLFMVDITGKVEQPVPTPAY 432 Query: 437 ASDPQW 442 ASDP W Sbjct: 433 ASDPTW 438 >gi|220924307|ref|YP_002499609.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylobacterium nodulans ORS 2060] gi|219948914|gb|ACL59306.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium nodulans ORS 2060] Length = 442 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 169/406 (41%), Positives = 241/406 (59%), Gaps = 4/406 (0%) Query: 42 SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 ++ P+ IA F L V+ +V+ +L+RS F I + F + N D+ PRF Sbjct: 38 GGSFQPMPIAVADFSGDPSLAPLVAGIVTSNLKRSGYFVPIEKARFPE-TPNFDAAPRFA 96 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 W GAQ LVTGRV ++ ++ EFRLWDV +Q+IG+++ S A+ R++ H ISD Sbjct: 97 AWKEAGAQGLVTGRVSRDASGGIKAEFRLWDVLAGQQMIGQQYAGSAANARRMGHLISDA 156 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITG G F++RI FV ES + L +MD+DGAN+RYLT S + + PR+SP Sbjct: 157 VYTKITGIGGFFDTRIAFVDESGSKERRRKRLAIMDQDGANVRYLT-SGEAAVVAPRYSP 215 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 Q + Y + RV +++ A + I M +PRFS +G+R ++S Q Sbjct: 216 ATQDITYMSQITGQQPRVQVINLETG-ARQVIPTKAEMSTSPRFSPDGRRLVMSDQDGGN 274 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 IY +DL S A R+TN I+ S S+SPD +IVFESDR G++Q+YVM ++GS+ +RI Sbjct: 275 ASIYVMDLASKAQTRVTNANAIDTSPSFSPDGREIVFESDRGGQQQIYVMGADGSNPRRI 334 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S E S P WSP+GD IAFT+ FAI +MK DGS ER+L E + + PTW+P+G Sbjct: 335 SFG-EGSASQPAWSPRGDYIAFTRQRKGSFAICIMKPDGSGERVLTEGFHNEGPTWAPNG 393 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + ++F R G G KLY +D+ GR E + TP+YASDP W +D Sbjct: 394 QYVLFFRDPGGQAGGKLYMVDITGRVEQPVPTPSYASDPSWSPLID 439 >gi|114765731|ref|ZP_01444829.1| translocation protein TolB precursor [Pelagibaca bermudensis HTCC2601] gi|114541948|gb|EAU44983.1| translocation protein TolB precursor [Roseovarius sp. HTCC2601] Length = 446 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/413 (40%), Positives = 252/413 (61%), Gaps = 10/413 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +++ P++ A FV+ + ++++V++ DL + +F I +D+ +I Sbjct: 34 LRIEITEGTIEPMAYAVPSFVAETPGAQQYAEQITQVIADDLTGTGLFREIPRDAHISRI 93 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPAS 150 T+ +S +F DW ++ A VL+TG + E R+ V+FR+WDV ++ G +F ++ Sbjct: 94 TSFESPVQFADWKAINALVLLTG-AVSEQNGRVTVKFRIWDVFAGTELGDGMQFAATSDG 152 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH ++D +Y +TGE G F+SR++FVSES L +MD DGAN++YLT SR Sbjct: 153 WRRLAHKVADQVYSRLTGESGYFDSRVVFVSESGPKDQRAKRLAIMDYDGANVQYLTDSR 212 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 I+ PRFSPN ++V Y +Y+ + RV++++ ++ M APRFS +G Sbjct: 213 S-IVLAPRFSPNGERVLYTSYESGEP-RVHVLNVGAVQSQIMSAGGGVMSFAPRFSPDGS 270 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + SV DIY DL S +T +LT T I + S+SPD S+IVFESDR G +QLYV Sbjct: 271 KVVYSVTSGSNTDIYMRDLASGSTTQLTFTPAIETAPSFSPDGSRIVFESDRSGSQQLYV 330 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++G + RIS + Y PVWSP+GDLIAFTK + +F IGVM+ DGS+ERLL Sbjct: 331 MPASGGEPTRISFG-QGRYGTPVWSPRGDLIAFTKQNQGRFHIGVMRTDGSEERLLTASH 389 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 + PTW+P+GR L+FSR+ G +G S LYS+D+ GR T + TP ASDP W Sbjct: 390 LDEGPTWAPNGRVLMFSRETQGASGTSSLYSVDVAGRKLTRVRTPDGASDPSW 442 >gi|149202852|ref|ZP_01879823.1| translocation protein TolB precursor [Roseovarius sp. TM1035] gi|149143398|gb|EDM31434.1| translocation protein TolB precursor [Roseovarius sp. TM1035] Length = 441 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 257/446 (57%), Gaps = 17/446 (3%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----I 58 +RF + L + L + VL G P +++ P+ A FVS Sbjct: 2 MRFMMT--LLAALTLWAMPVLAQGNGP------LRIEITEGVIEPLPFAVPDFVSDSAAG 53 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 ELG ++ V++ DL + +F I + +IT+ +S ++ DW ++ AQ L+TG V Sbjct: 54 QELGRNIASVIAADLNGTGLFRQIPSSAHISRITSFESPVQYADWRAINAQALITGAVST 113 Query: 119 EGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 +G R+ +FR++DV +++ G++ + WR+IAH ++D +Y ITGE G F+SR+ Sbjct: 114 DGAGRIIAKFRIYDVFSGQELGAGQQLVGTQDGWRRIAHKVADQVYSRITGEGGYFDSRV 173 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +FV+ES L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 174 VFVAESGPKDQRAKRLGIMDYDGANVQYLTDS-TSIVLAPRFSPTGDRVLYTSYE-TGFP 231 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 R+Y++D + +M APRF+ NG+ + S+ + D+Y++D+ S A+ RL Sbjct: 232 RIYVLDVANVGRRELPTQDATMSFAPRFAPNGRTVVYSLTQGGNTDLYTMDIGSGASTRL 291 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T I + SYSPD SQIVFESDR G QLY+M + G + +RIS E Y PVWSP+ Sbjct: 292 TTAPSIETAPSYSPDGSQIVFESDRSGTPQLYIMSAGGGEARRISFG-EGRYGTPVWSPR 350 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-S 416 GDL+AFTK S +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G+ G + Sbjct: 351 GDLVAFTKQSKGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRETQGEQGQA 410 Query: 417 KLYSIDLNGRNETLINTPAYASDPQW 442 LYS+D+ GRN + T ASDP W Sbjct: 411 SLYSVDITGRNLKQVPTNTGASDPSW 436 >gi|159043660|ref|YP_001532454.1| translocation protein TolB [Dinoroseobacter shibae DFL 12] gi|189035981|sp|A8LHQ6|TOLB_DINSH RecName: Full=Protein tolB; Flags: Precursor gi|157911420|gb|ABV92853.1| Tol-Pal system beta propeller repeat TolB [Dinoroseobacter shibae DFL 12] Length = 446 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 171/404 (42%), Positives = 246/404 (60%), Gaps = 12/404 (2%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ IA F++ + +++VV+ DL+ S +F I +++F IT+ DS ++ D Sbjct: 42 PLPIAVPPFLAETPAASQFARDIAQVVADDLEGSGLFRAIPENAFISPITSFDSPVQYAD 101 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDD 161 W ++ AQ LVTG V RL V+FRL+DV D G +F +S +SWR++ H ++D Sbjct: 102 WKAINAQALVTGSVSVASDGRLVVKFRLFDVFSDAPLGKGLQFVASQSSWRRMGHKVADA 161 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITGE G F+SR++FVSE+ + L +MD DGAN+++LT S I+ PRFSP Sbjct: 162 VYSRITGEGGYFDSRVVFVSETGPKNARQKRLAIMDYDGANVQFLTDS-SAIVLAPRFSP 220 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALISVQKD 279 +V Y +Y ++ L+D R+ + +G+ + M APRFS +G+ + S+ Sbjct: 221 TGDRVLYTSYATGRP-QITLLDVNSVRS-QGLGSAQGGEMSFAPRFSPDGRSVVFSLTNG 278 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DIY DL S A RLT T I + S+SPD QIVFESDR G +QLYVM + G + + Sbjct: 279 GNSDIYRRDLSSGAQTRLTATPAIETAPSFSPDGRQIVFESDRSGSQQLYVMSATGGEAR 338 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 RIS Y PVWSP+GDLIAFTK + +F IGVM+ DGS+ERLL ++PTWSP Sbjct: 339 RISFGP-GRYGTPVWSPRGDLIAFTKQNQGRFHIGVMRTDGSEERLLTSSFLDESPTWSP 397 Query: 400 SGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQW 442 +GR ++F+R+ G G+ LYS+D++GRN + TP ASDP W Sbjct: 398 NGRVIMFTRETSGAGGAPSLYSVDISGRNLRRVPTPGAASDPAW 441 >gi|89053466|ref|YP_508917.1| translocation protein TolB [Jannaschia sp. CCS1] gi|119371046|sp|Q28TS0|TOLB_JANSC RecName: Full=Protein tolB; Flags: Precursor gi|88863015|gb|ABD53892.1| Twin-arginine translocation pathway signal [Jannaschia sp. CCS1] Length = 445 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/402 (39%), Positives = 240/402 (59%), Gaps = 9/402 (2%) Query: 47 PVSIAFTKFVSI---DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDW 103 P+ A F+++ ++ VS V++ DL+ + +F I D++ +ITN + + DW Sbjct: 42 PLPFALPTFLAVGGAEDAAADVSRVIAADLRGTGLFRQIPPDAYISQITNFGAPVAYPDW 101 Query: 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDI 162 ++ AQ L+TG+V +L V FRL+DV + + F PA SWR++AHT++D + Sbjct: 102 QAINAQALITGQVEARADGQLVVRFRLFDVFSQAPLGEGLQFVGPADSWRRMAHTVADQV 161 Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y ITGE G F++R+ F++E L +MD DGAN+++LT SR I+ PRFSP Sbjct: 162 YSRITGEGGYFDTRVAFIAEEGPKNARLKRLAIMDYDGANVQFLTDSR-SIVLAPRFSPQ 220 Query: 223 QQKVAYATYDDEDILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 ++ Y +Y+ +VY+MD + R P +M +PRFS +G+ + S+ Sbjct: 221 GDRILYTSYE-SGFPQVYIMDVATVQRRPLEAIPAETMTFSPRFSPSGQSVVFSLVDGSN 279 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIYS+DL + +LT I + S+SPD SQIVFESDR G +Q+Y+M ++G + +R+ Sbjct: 280 TDIYSLDLATGTRRQLTQAPSIETAPSFSPDGSQIVFESDRSGNQQIYIMPADGGEARRV 339 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S Y PVWSP+GD IAFTK +F IGVM+ DGS ERLL + PTW+P+G Sbjct: 340 SAGT-GRYGTPVWSPRGDYIAFTKQENGRFHIGVMRTDGSDERLLTSSFLDEGPTWAPNG 398 Query: 402 RSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQW 442 R ++F+R+ GD G+ +YS+D++GRN + TP ASDP W Sbjct: 399 RVIMFTRETPGDDGAPAVYSVDISGRNLQRVATPGMASDPAW 440 >gi|85706711|ref|ZP_01037803.1| translocation protein TolB precursor [Roseovarius sp. 217] gi|85668769|gb|EAQ23638.1| translocation protein TolB precursor [Roseovarius sp. 217] Length = 440 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 166/405 (40%), Positives = 244/405 (60%), Gaps = 15/405 (3%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FVS ELG ++ V++ DL + +F I ++ +IT+ +S ++ D Sbjct: 37 PMPFAAPDFVSDSAAGQELGRNIASVIAADLSGTGLFRQIPSEAHISRITSFESPVQYAD 96 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V +G R+ +FR++DV +++ G++ + WR+IAH ++D Sbjct: 97 WRAVNAQALITGAVSTDGAGRIVAKFRIYDVFSGQELGSGQQLVGTQDGWRRIAHKVADQ 156 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITGE G F+SR++FV+ES L +MD DGAN +YLT S I+ PRFSP Sbjct: 157 VYSRITGEGGYFDSRVVFVAESGPKDQRAKRLAIMDYDGANTQYLTDSAS-IVLAPRFSP 215 Query: 222 NQQKVAYATYDDEDILRVYLMD-TRIDR--APKRIGNFRSMILAPRFSSNGKRALISVQK 278 +V Y +Y+ R+Y++D + R P G +M APRF+ NG+ + S+ + Sbjct: 216 TGDRVLYTSYE-TGFPRIYVLDVANVGRRELPTLDG---TMSFAPRFAPNGRTVVYSLTQ 271 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D+Y++D+ S A+ RLT I + SY+PD SQIVFESDR G QLYVM + G + Sbjct: 272 GGNTDLYTMDVGSGASTRLTTAPSIETAPSYNPDGSQIVFESDRSGTPQLYVMSAGGGEA 331 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 +RIS E Y PVWSP+GDL+AFTK S +F IGVM+ DGS+ERLL + PTW+ Sbjct: 332 RRISF-GEGRYGTPVWSPRGDLVAFTKQSKGRFHIGVMRTDGSEERLLTASFLDEGPTWA 390 Query: 399 PSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 P+GR ++F+R+ G G + LYS+D+ GRN + T ASDP W Sbjct: 391 PNGRVIMFTRETQGAQGQASLYSVDITGRNLKAVPTNTGASDPSW 435 >gi|114327770|ref|YP_744927.1| translocation protein TolB [Granulibacter bethesdensis CGDNIH1] gi|114315944|gb|ABI62004.1| tolB protein [Granulibacter bethesdensis CGDNIH1] Length = 452 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 238/400 (59%), Gaps = 10/400 (2%) Query: 43 ANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 A +P+ IA F +L ++ V++ DL+RS +F +++ ++ Q+ + +P FQ Sbjct: 58 ARTAPIPIAIPSFGGGSQLAQDMAGVIAADLERSGLFRIVAPGAYPQQSGD---VPNFQS 114 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDI 162 W ++GAQ LVTG V G +RVEFRLWDV ++QI G + ++ +WR+I+H I+D I Sbjct: 115 WGAIGAQALVTGNVSGSGGS-VRVEFRLWDVLPQQQIQGTAYTTTSGNWRRISHIIADVI 173 Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y+ + GEKG F++RI++VS + L VMD+D AN RYLT +L PRF P Sbjct: 174 YERMLGEKGYFDTRIVYVSNTGPRTNRTKRLAVMDQDSANNRYLTDGSWMVL-TPRFHPT 232 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + ++ + +Y + + RVY + + +G + M APRFS +G ++S+ + Sbjct: 233 RDEIVFMSYAN-NRPRVYTFNLATG-GQRMLGEWPGMTFAPRFSPDGSSVVMSMTRGGGS 290 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V L +LTN+ I+ S +SPD SQIVF SDR G +QLYVM ++GS +RIS Sbjct: 291 DIYVVGLGGGGHRQLTNSGSIDTSPCFSPDGSQIVFNSDRGGDQQLYVMGADGSGVRRIS 350 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 Y PVWSP+GDLIAFT+ + IGVMK DGS ER+L + +++ PT+ P+GR Sbjct: 351 F-GSGRYATPVWSPRGDLIAFTRLGSSAWNIGVMKPDGSGERILAQGYDVEGPTFCPNGR 409 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L+F G KL S+D+ G NE + TP ASDP W Sbjct: 410 VLMFWSASGGR--QKLVSVDITGFNERPVPTPTDASDPAW 447 >gi|254512269|ref|ZP_05124336.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae bacterium KLH11] gi|221535980|gb|EEE38968.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae bacterium KLH11] Length = 439 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/442 (39%), Positives = 258/442 (58%), Gaps = 21/442 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHA---FVKVATNSANYSPVSIAFTKFV----SIDELGGKV 65 MK+ L + L +HA +++ + P+ A FV + + + Sbjct: 2 MKLLTSLFVGLT--LLAAPVHAQSGPLRLEIDEGIIEPLPFAVPNFVPDGPAAAQYAQDI 59 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S V+ DL + +F IS D+F ++++ D+ +F DW ++ AQ LVTG V GK RL Sbjct: 60 SRVIVSDLTGTGLFREISADAFISRVSSFDAPVQFPDWKAINAQALVTGAVNVSGK-RLT 118 Query: 126 VEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 V FR+WDV +++ G +F + WR++AH ++D +Y ITGE F+SR+ FVSES Sbjct: 119 VRFRVWDVFSGQELGNGLQFAGTTDGWRRMAHKVADQVYSRITGEGAYFDSRVAFVSESG 178 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L +MD DGAN++YLT S I+ PRFSP+ ++ Y +Y+ R+YL+D Sbjct: 179 PKDQRRKRLAIMDYDGANVQYLTDSA-AIVLAPRFSPSGDRLLYTSYETGQP-RIYLLDV 236 Query: 245 -RIDRA--PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 R+ R P G +M +PRFS +G+ + S+ + D++ +DL + + RLTNT Sbjct: 237 GRVQRQELPTEAG---TMSFSPRFSPDGRSIVYSLSQGGNTDLWKMDLATRQSVRLTNTP 293 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I + SYSPD SQIVFESDR G QLY+M + G + RIS + Y PVWSP+GDLI Sbjct: 294 AIETAPSYSPDGSQIVFESDRSGSPQLYIMPATGGEATRISF-GQGRYGTPVWSPRGDLI 352 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYS 420 AFTK + +F IGVM+ +G +ERLL + PTWSP+GR ++F+R+ G +G S LYS Sbjct: 353 AFTKQNKGRFHIGVMRTNGDEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRSALYS 412 Query: 421 IDLNGRNETLINTPAYASDPQW 442 +D++GRN + TP SDP W Sbjct: 413 VDISGRNLRPVRTPDGGSDPSW 434 >gi|110679376|ref|YP_682383.1| translocation protein TolB [Roseobacter denitrificans OCh 114] gi|118574597|sp|Q167Z6|TOLB_ROSDO RecName: Full=Protein tolB; Flags: Precursor gi|109455492|gb|ABG31697.1| TolB protein, putative [Roseobacter denitrificans OCh 114] Length = 443 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 154/385 (40%), Positives = 241/385 (62%), Gaps = 6/385 (1%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 ++ ++++V++ DL + +F I D+F +++ + ++ DW ++ AQ L+TG V + Sbjct: 58 DVAAQITQVIAADLTGTGLFRQIEPDAFISTVSSFAAPIQYADWKAINAQALITGAVAVQ 117 Query: 120 GKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 G ++L V+FRL+DV ++ G +F ++P WR++AH ++D +Y ITGE G F+SR++ Sbjct: 118 G-NQLNVKFRLYDVFSGAEMGDGLQFSATPDGWRRMAHKVADAVYSRITGEGGYFDSRVV 176 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +VSE+ + L +MD DGAN++YLT S I+ PRFSP+ Q++ Y +Y+ R Sbjct: 177 YVSETGTKDARQKRLAIMDYDGANVKYLTDS-SSIVLAPRFSPDGQRILYTSYE-TGFPR 234 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y++D + +M APRF+ +G+ + S+ + DIY +++ + RLT Sbjct: 235 IYVLDVTSLQRRGLESQEGTMSFAPRFAPDGQTIVFSLSQGGNTDIYRMNVNGGSATRLT 294 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + I + SYSPD +QIVFESDR G +QLYVM +NG + +RIS Y PVWSP+G Sbjct: 295 SAPSIETAPSYSPDGTQIVFESDRSGSQQLYVMPANGGEARRISFGP-GRYGTPVWSPRG 353 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SK 417 DL+AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++FSR+ G G + Sbjct: 354 DLVAFTKQNAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRAT 413 Query: 418 LYSIDLNGRNETLINTPAYASDPQW 442 LYS+D+ GRN + TP SDP W Sbjct: 414 LYSVDITGRNLRPVRTPEGGSDPSW 438 >gi|254461647|ref|ZP_05075063.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales bacterium HTCC2083] gi|206678236|gb|EDZ42723.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae bacterium HTCC2083] Length = 439 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 165/404 (40%), Positives = 250/404 (61%), Gaps = 14/404 (3%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV+ +E +++ VV DL + +F + +D++ +IT+ D+ ++ D Sbjct: 37 PMPFAAPNFVAESGAANEFAERLARVVVSDLAGTGLFREVPRDAYISQITSFDAPVQYVD 96 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDD 161 W ++ AQ LVTG V G + L V+FR++DV +I G +F + WR++AH ++D Sbjct: 97 WKAINAQALVTGAVNVSGSN-LSVKFRVYDVFSGTEIGSGLQFAGTTQGWRRMAHKVADQ 155 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITGE+ F+SR+++VSE + L +MD DGAN++YLT S + ++ PRFSP Sbjct: 156 VYARITGEQPYFDSRVVYVSEQGPKDKRRKRLAIMDYDGANVQYLTGS-EHLVLAPRFSP 214 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR--SMILAPRFSSNGKRALISVQKD 279 +V Y +Y+ R+Y+++ + +R+ + SM APRFS +G+ + S+ + Sbjct: 215 TGDRVLYTSYET-GFPRIYVLE--VGSVKRRVLESQDGSMSFAPRFSPDGRTVVYSLARG 271 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DI+ +D+ S ++ RLT+ I + SYSPD S+IVFESDR G +Q+Y+M +NG + K Sbjct: 272 GNTDIFRMDVASGSSVRLTSGPAIETAPSYSPDGSRIVFESDRSGSQQIYIMSANGGEAK 331 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 RIS K Y PVWSP+GDLIAFTK S +F IGVM+ DGS+ERLL + PTWSP Sbjct: 332 RISFGK-GRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRTDGSEERLLTASFLDEGPTWSP 390 Query: 400 SGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQW 442 +GR ++F+R+ G GS LYS+D++GRN I T ASDP W Sbjct: 391 NGRVIMFTRETQGSAGSASLYSVDISGRNLKRIPTEGGASDPSW 434 >gi|163733521|ref|ZP_02140964.1| translocation protein TolB precursor [Roseobacter litoralis Och 149] gi|161393309|gb|EDQ17635.1| translocation protein TolB precursor [Roseobacter litoralis Och 149] Length = 443 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 6/384 (1%) Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 + +++EV+S DL + +F I +F +++ + ++ DW ++ AQ L+TG V +G Sbjct: 59 VAAQITEVISADLTGTGLFREIEPGAFISNVSSFAAPIQYADWKAINAQALITGAVAVQG 118 Query: 121 KDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 ++L V+FRL+DV ++ G +F ++P WR++AH ++D +Y ITGE G F+SR+++ Sbjct: 119 -NQLNVKFRLYDVFSGAEMGDGLQFSATPEGWRRMAHKVADAVYSRITGEGGYFDSRVVY 177 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VSE+ + L +MD DGAN++YLT S I+ PRFSP+ Q+V Y +Y+ R+ Sbjct: 178 VSETGTKDARQKRLAIMDYDGANVKYLTDS-SSIVLAPRFSPDGQRVLYTSYET-GFPRI 235 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y++D + +M APRF+ +G+ + S+ + DIY +++ RLT Sbjct: 236 YVLDVTSVQRRALESQEGTMSFAPRFAPDGETIVFSLSQGGNTDIYRMNVNGGPATRLTA 295 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I + SYSPD +QIVFESDR G +QLYVM ++G + +RIS Y PVWSP+GD Sbjct: 296 APSIETAPSYSPDGTQIVFESDRSGSQQLYVMPASGGEARRISFGP-GRYGTPVWSPRGD 354 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKL 418 L+AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++FSR+ G G + L Sbjct: 355 LVAFTKQNAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRATL 414 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 YS+D+ GRN + TP SDP W Sbjct: 415 YSVDITGRNLRPVRTPEGGSDPSW 438 >gi|126725523|ref|ZP_01741365.1| translocation protein TolB precursor [Rhodobacterales bacterium HTCC2150] gi|126704727|gb|EBA03818.1| translocation protein TolB precursor [Rhodobacterales bacterium HTCC2150] Length = 444 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 176/439 (40%), Positives = 258/439 (58%), Gaps = 16/439 (3%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSE 67 + + L L V++G F S +++ P+ IA FV+ L ++S Sbjct: 9 GLILALTLSPVMMGTGFAQS--GPLRIEVTDGVIEPLPIAVPSFVAENAAAKNLAEEISR 66 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL S +F + +++ +TN D+ R+ DW ++ AQ LVTG V +GK R+ V+ Sbjct: 67 VVVSDLVGSGLFREVPREAHIANVTNFDAAVRYADWKAINAQGLVTGAVSVQGK-RVIVK 125 Query: 128 FRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRL+DV D+ G +F S +WR++AH ++D Y ITGE F+SR++FVSE+ Sbjct: 126 FRLFDVFSDKPLGDGLQFAGSTDAWRRMAHKVADAAYSRITGEGPYFDSRVVFVSEAGPK 185 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + L VMD DGAN++YLT S I+ PRFSP +V Y +Y+ R+Y +D + Sbjct: 186 GQRQKRLAVMDYDGANVQYLTDS-TSIVLGPRFSPTGDRVLYTSYETGSP-RIYALD--V 241 Query: 247 DRAPKRIGNFRSMILA--PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 +R+ + ++ L+ PRF+ +G + S ++ DIY++ ++ A +RLT++ I+ Sbjct: 242 ASVSRRVLDSQAATLSFSPRFAPDGDTVVFSRSQNGNSDIYTMSVRGGAQKRLTSSPAID 301 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SYSPD QIVFESDR G +Q+YVM + G + KRIS Y PVWSP+GD IAFT Sbjct: 302 TGPSYSPDGKQIVFESDRSGNQQIYVMPAGGGEPKRISFGA-GRYGTPVWSPRGDYIAFT 360 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDL 423 K + +F IGVM+ DGS+ERLL + PTW+P+GR ++F R+ G G S LYS+DL Sbjct: 361 KQNKGRFHIGVMRTDGSEERLLTSSFLDEGPTWAPNGRVIMFMRETSGANGTSSLYSVDL 420 Query: 424 NGRNETLINTPAYASDPQW 442 GRN + TP ASDP W Sbjct: 421 TGRNLKRVPTPLGASDPAW 439 >gi|149915620|ref|ZP_01904146.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b] gi|149810512|gb|EDM70355.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b] Length = 440 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 173/444 (38%), Positives = 261/444 (58%), Gaps = 14/444 (3%) Query: 13 MKINLCLLLVLIGGFFP-TSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSE 67 M+ L LL VL+ P T+ +++ P+ A FVS E G +++E Sbjct: 2 MRYILSLLTVLMLWSLPATAQTGPLRIEITEGVIEPLPFAAPDFVSDSTTGAEFGRRIAE 61 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL + +F I ++F ++T+ S ++ DW ++ AQ LVTG V + +L V Sbjct: 62 VIAADLTGTGLFREIQPEAFISRVTSFSSPVQYADWKAINAQALVTGAVSVDAGGQLVVR 121 Query: 128 FRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRL+DV +++ G + + WR+IAH ++D IY ITGE F+SR+++V+E+ Sbjct: 122 FRLYDVFAGQELGQGLQLVGTQDGWRRIAHKVADQIYSRITGEAPYFDSRVVYVAETGPK 181 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD DGAN+ YLT S I+ PRFSP+ ++V Y +Y+ R+Y++ ++ Sbjct: 182 DQRIKRLAIMDYDGANVSYLTDSAS-IVLAPRFSPDGRQVLYTSYE-SGFPRIYVL--QV 237 Query: 247 DRAPKRIGNFR--SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A +R+ + +M APRF+ +G+R + S+ D+Y +D+ S + RLTN I Sbjct: 238 GSAQRRVLEQQDGTMSFAPRFAPDGRRVVYSLSSGGNTDLYMMDIGSGTSTRLTNAPSIE 297 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD S+IVFESDR G QLY+M S G + +RIS + Y PVWSP+GDLIAFT Sbjct: 298 TAPSFSPDGSRIVFESDRSGSPQLYIMPSAGGEAQRISFG-QGRYGTPVWSPRGDLIAFT 356 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDL 423 K S +F IGV++ DGS+ERLL + PTWSP+GR ++F+R+ G GS LYS+D+ Sbjct: 357 KQSKGRFHIGVIRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGAQGSASLYSVDI 416 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 +GRN + T A SDP W D Sbjct: 417 SGRNLRKVPTEAGGSDPSWSPLQD 440 >gi|315498693|ref|YP_004087497.1| tol-pal system beta propeller repeat protein tolb [Asticcacaulis excentricus CB 48] gi|315416705|gb|ADU13346.1| Tol-Pal system beta propeller repeat protein TolB [Asticcacaulis excentricus CB 48] Length = 436 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 170/428 (39%), Positives = 247/428 (57%), Gaps = 5/428 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + L L G A ++ +P+ IA S +LG K++ VV DL+ Sbjct: 9 VAFATFLALTGAPLAAFAQAPIRAEVAEGVIAPMPIAIDIESSGSDLGDKITRVVMADLE 68 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS F I ++F ++ D+ P F W ++ AQ L G +G+ RL+V+FRLWDV Sbjct: 69 RSGFFKPIDPNAFIEQSVGIDATPTFASWKTINAQALANGAARVDGEGRLQVDFRLWDVF 128 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ ++P +WR+IAH I+D IY+ +TGE+G F++RI+FV+ES G L Sbjct: 129 SEKQLLGQSVTATPENWRRIAHKIADAIYEKLTGEEGYFDTRIVFVAESGARGKRVKRLA 188 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DGAN YLT +++ PRFS + Q+VAY ED R+Y+ + R + +G Sbjct: 189 IMDQDGANPSYLTDGSYKVM-TPRFSADSQEVAYMVL-REDSARIYVFNIETGRQ-EAVG 245 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + M+ APRFS +G + SV + DIY +DL++ AT R+T I+ S S+SPD S Sbjct: 246 QIKGMVFAPRFSPDGSKLAYSVAQGGNTDIYVMDLRTRATRRVTTDPGIDTSPSFSPDGS 305 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 IVF SDR G QLY M ++GS +RIS Y PV+SP+GD IAFTK SG +F+IG Sbjct: 306 TIVFNSDRGGSPQLYAMNADGSGVRRISFGG-GIYSTPVFSPKGDKIAFTKQSGGRFSIG 364 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM G E+LL + PTW+P+GR ++F R+ G S L+ ++ +GR E + Sbjct: 365 VMDAGGGNEKLLTSSFLEEGPTWAPNGRYIMFFREPPGALPS-LWMVEASGRIERQVPYS 423 Query: 435 AYASDPQW 442 ASDP W Sbjct: 424 GGASDPAW 431 >gi|304320242|ref|YP_003853885.1| translocation protein TolB precursor [Parvularcula bermudensis HTCC2503] gi|303299144|gb|ADM08743.1| translocation protein TolB precursor [Parvularcula bermudensis HTCC2503] Length = 442 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 165/406 (40%), Positives = 239/406 (58%), Gaps = 8/406 (1%) Query: 47 PVSIAFTKFVSIDELGGKVS----EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ +A F++ E +VS EV+ DL S +F I +F Q++ + ++ PRF D Sbjct: 40 PMPVALPAFIATGEGAERVSADLSEVIRDDLASSSLFAPIDPAAFIQQLQSVNTPPRFAD 99 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDD 161 W ++ A+VL+ G V R++V RLWDV KQ+ G F +PA+ RK H I+D Sbjct: 100 WRAIDARVLLVGEVTALSGGRIQVAARLWDVGASKQL-GTIAFKTPATNVRKAGHEIADF 158 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y+ +TGE G F+++I++V+ES + L +MD+DGAN LT + PRFSP Sbjct: 159 VYEQLTGEPGYFDTKIVYVAESGPKTDRRKRLMIMDQDGANPSILTDGLNFDALTPRFSP 218 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 QQ++ + D+ +VYL D + +G++R M APRFS++G+ L+S+++ Sbjct: 219 TQQQIIFLAMFDDRPSQVYLYDIETTEM-EALGSWRGMTFAPRFSTDGRGVLLSIEEAGN 277 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI +DL + ERLT I+ S S SPD I F SDR G +Q+YVM ++GSDQ+RI Sbjct: 278 TDIARMDLITRRIERLTRNPAIDTSPSMSPDGRHITFASDRGGSQQIYVMNADGSDQRRI 337 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 + +Y PVWSP+GDLIAFT+ +F IGV+K DG+ ERLL E + PTWSP+G Sbjct: 338 TF-GNGTYGTPVWSPRGDLIAFTRLYRGRFYIGVVKPDGTGERLLTESYLDEGPTWSPNG 396 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 R ++F R+ LYSIDL GRN + T ASDP W +D Sbjct: 397 RVIMFFRENRPGGPVNLYSIDLTGRNLRRVETSTEASDPAWSPLLD 442 >gi|254477250|ref|ZP_05090636.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp. R11] gi|214031493|gb|EEB72328.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp. R11] Length = 446 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 169/404 (41%), Positives = 246/404 (60%), Gaps = 14/404 (3%) Query: 47 PVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV + EL ++S V++ DL + +F I + KI+N DS + D Sbjct: 44 PLPYAVPDFVPETPAAAELAREISRVIAADLSGTGLFREIPASAHISKISNFDSPVSYAD 103 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG + G +RL V FR DV K++ G +F + WR++AH ++D Sbjct: 104 WKAINAQALITGGLSVNG-NRLTVRFRGHDVFAEKELGSGLQFAGTTDGWRRMAHKVADV 162 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 IY ITGE G F+SR++FVSES + L +MD DGAN++YLT S I+ PRFSP Sbjct: 163 IYNRITGESGYFDSRVVFVSESGPKNDRRKRLAIMDYDGANVQYLTNSA-SIVLAPRFSP 221 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL--APRFSSNGKRALISVQKD 279 +V Y +Y+ +++++D + +R+ + + I+ APRF+ +G+ + S + Sbjct: 222 TGDRVLYTSYE-SGFPQIHVLD--VGSVQRRVLSSDNGIMSFAPRFAPDGRTVVYSQAQG 278 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DIY++D+ S A +RLT+ I + SYSPD SQIVFESDR G QLYVM ++G + + Sbjct: 279 GNTDIYTLDINSGARQRLTSAPSIETAPSYSPDGSQIVFESDRSGAPQLYVMPASGGEAR 338 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 RIS Y PVWSP+GDLIAFTK + +F IGVM+ DGS+ERLL + PTWSP Sbjct: 339 RISFGA-GRYGTPVWSPRGDLIAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSP 397 Query: 400 SGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 +GR ++F+R+ G+ G + LYS+D+ GRN + TP ASDP W Sbjct: 398 NGRVIMFTRETQGENGRALLYSVDITGRNLKPVRTPDGASDPAW 441 >gi|148261881|ref|YP_001236008.1| TolB domain-containing protein [Acidiphilium cryptum JF-5] gi|146403562|gb|ABQ32089.1| TolB, N-terminal domain protein [Acidiphilium cryptum JF-5] Length = 469 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 162/414 (39%), Positives = 247/414 (59%), Gaps = 15/414 (3%) Query: 38 VATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSF-KQKIT 92 + + A+ +P+ IA F + ++G ++++VV+ DL +F+ I SF + Sbjct: 57 INVSGAHNAPIPIALPAFTDASGNTSDIGAQITQVVTSDLDHCGLFSAIDPTSFVPNSVV 116 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 N S+P + +W+ LGAQ LVTG+V G ++RVE+RLW + +KQ+ G + ++ +WR Sbjct: 117 N--SVPVWNNWSILGAQALVTGQVTSPGAGQIRVEYRLWGISQQKQLQGTAYTTASGNWR 174 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +IAH I+DDIYQ + GEKG F++R+ F+S S + +MD DGAN+R+LT R+ Sbjct: 175 RIAHIIADDIYQQMIGEKGYFDTRVAFISVSGPPTSPIRRMALMDYDGANVRFLTSGRNM 234 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 L P+F+P +Q++A+ ++++ +VYL D + A IG+F M PRFS +G Sbjct: 235 AL-SPQFNPTRQQLAFVSFENNRP-QVYLFDLQTG-ARTNIGSFGDMSFGPRFSPDGSAL 291 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYV 330 L S+ K I DL S +LT+ IN++ YSPD ++IVF SDR+G +QL+V Sbjct: 292 LFSISKGGGAMIVKYDLGSRRMTQLTDANSINVTPCYSPDGTKIVFNSDRDGSGDQQLFV 351 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS+ +RIS A Y +P WSP+GD IAFT+ F IGVMK DGS ERLL + Sbjct: 352 MNADGSNVQRISY-GHARYAEPDWSPRGDAIAFTRLDSSGFGIGVMKPDGSGERLLSQGY 410 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGRNETLINTPAYASDPQW 442 + T+ P+GR ++F R+ G S L +I ++G NE + TP A DP W Sbjct: 411 LEEGATFCPNGRVIMFYRQSPLRVGNVSHLVTIGVDGFNERITPTPTNAEDPSW 464 >gi|84501652|ref|ZP_00999824.1| translocation protein TolB precursor [Oceanicola batsensis HTCC2597] gi|84390273|gb|EAQ02832.1| translocation protein TolB precursor [Oceanicola batsensis HTCC2597] Length = 443 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 165/409 (40%), Positives = 247/409 (60%), Gaps = 14/409 (3%) Query: 47 PVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV + E+ +++ VVS DL + +F I Q++ ++T+ S ++ D Sbjct: 41 PLPFAVPDFVPENGASAEMAAQITRVVSDDLTGTGLFREIPQNAHIARVTSFSSPVQYAD 100 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V G DR+ V+FRL+DV +++ G +F + A WR++AH ++D Sbjct: 101 WKAINAQALITGAVGVTG-DRVNVKFRLYDVFSGQEMGDGLQFSGTTAGWRRMAHKVADA 159 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITGE F+SR+++VSE+ + L +MD DGAN++YLT S I+ PRFSP Sbjct: 160 VYSRITGEGPYFDSRVVYVSETGPKNDRRKRLAIMDYDGANVQYLTDS-SSIVLAPRFSP 218 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF--RSMILAPRFSSNGKRALISVQKD 279 +V Y +Y+ ++Y++D + +R N +M APRF +G+ + S+ + Sbjct: 219 TGDRVLYTSYE-TGFPKIYVLD--VASVGRRTLNTPEGTMSFAPRFHPDGQTVVYSLTQG 275 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DI+S+D+ S + RLT I + S+SPD SQIVFESDR G +QLY+M G + Sbjct: 276 GNTDIFSLDINSGQSTRLTQAPSIETAPSFSPDGSQIVFESDRSGTQQLYIMPVGGGEPT 335 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 RIS + Y PVWSP+GDLIAFTK S +F IGVM+ DGS+ERLL + PTW+P Sbjct: 336 RISF-GQGRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRTDGSEERLLTASFLDEGPTWAP 394 Query: 400 SGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 +GR ++F+R+ G+ GS LYS+D++GRN + T ASDP W D Sbjct: 395 NGRVIMFTRETQGEQGSASLYSVDISGRNLKRVRTEGAASDPSWSPLQD 443 >gi|326405385|ref|YP_004285467.1| protein TolB [Acidiphilium multivorum AIU301] gi|325052247|dbj|BAJ82585.1| protein TolB [Acidiphilium multivorum AIU301] Length = 469 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 162/414 (39%), Positives = 247/414 (59%), Gaps = 15/414 (3%) Query: 38 VATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSF-KQKIT 92 + + A+ +P+ IA F + ++G ++++VV+ DL +F+ I SF + Sbjct: 57 INVSGAHNAPIPIALPAFTDASGNTSDIGAQITQVVTSDLDHCGLFSAIDPTSFVPNSVV 116 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 N S+P + +W+ LGAQ LVTG+V G ++RVE+RLW + +KQ+ G + ++ +WR Sbjct: 117 N--SVPVWNNWSILGAQALVTGQVTSPGAGQIRVEYRLWGISQQKQLQGTAYTTASGNWR 174 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +IAH I+DDIYQ + GEKG F++R+ F+S S + +MD DGAN+R+LT R+ Sbjct: 175 RIAHIIADDIYQQMIGEKGYFDTRVAFISVSGPPTSPIRRMALMDYDGANVRFLTSGRNM 234 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 L P+F+P +Q++A+ ++++ +VYL D + A IG+F M PRFS +G Sbjct: 235 AL-SPQFNPTRQQLAFVSFENNR-PQVYLFDLQTG-ARTNIGSFGDMSFGPRFSPDGSAL 291 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYV 330 L S+ K I DL S +LT+ IN++ YSPD ++IVF SDR+G +QL+V Sbjct: 292 LFSISKGGGAMIVKYDLGSRRMTQLTDANSINVTPCYSPDGTKIVFNSDRDGSGDQQLFV 351 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS+ +RIS A Y +P WSP+GD IAFT+ F IGVMK DGS ERLL + Sbjct: 352 MNADGSNVQRISY-GHARYAEPDWSPRGDAIAFTRLDSSGFGIGVMKPDGSGERLLSQGY 410 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGRNETLINTPAYASDPQW 442 + T+ P+GR ++F R+ G S L +I ++G NE + TP A DP W Sbjct: 411 LEEGATFCPNGRVIMFYRQSPLRVGNVSHLVTIGVDGFNERITPTPTNAEDPSW 464 >gi|99082205|ref|YP_614359.1| translocation protein TolB [Ruegeria sp. TM1040] gi|118574598|sp|Q1GE19|TOLB_SILST RecName: Full=Protein tolB; Flags: Precursor gi|99038485|gb|ABF65097.1| TolB-like protein [Ruegeria sp. TM1040] Length = 441 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++ V+++DL S +F I + ++ T+ D+ F DW ++ AQ L+ G V G DR+ Sbjct: 61 IARVIAQDLVGSGLFREIPKVAYISPYTDFDAEVNFTDWKAINAQALIAGAVSLSG-DRI 119 Query: 125 RVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FR +DV +++ G + + WR+IAH ++D IY +TGE G F+SR++FVSE+ Sbjct: 120 TVRFRGYDVFAGQELGAGLQLSGTTDGWRRIAHKVADTIYSRLTGEGGYFDSRVVFVSET 179 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 K L +MD DGAN++YLT S D I+ PRFSP +V Y +Y+ +++++D Sbjct: 180 GPKNDRKKRLAIMDYDGANVQYLTNS-DAIVLAPRFSPTGDRVLYTSYE-SGFPQIHVLD 237 Query: 244 T-RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 R+ R GN SM APRF+ NG+ + S + D++S+D+ S +RLT+ Sbjct: 238 VGRVQRRVLSAGN-GSMSFAPRFAPNGQTIVYSQSQGGNTDLFSMDINSGNPQRLTSAPS 296 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I + S+SPD SQIVFESDR G QLYVM ++G + KRIS + Y PVWSP+GD IA Sbjct: 297 IETAPSFSPDGSQIVFESDRSGTSQLYVMSASGGEAKRISF-GQGRYGTPVWSPRGDYIA 355 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSI 421 FTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G ++LYS+ Sbjct: 356 FTKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGQARLYSV 415 Query: 422 DLNGRNETLINTPAYASDPQW 442 D++GRN + TP ASDP W Sbjct: 416 DISGRNLKPVKTPDGASDPSW 436 >gi|260576644|ref|ZP_05844631.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp. SW2] gi|259021129|gb|EEW24438.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp. SW2] Length = 445 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 173/440 (39%), Positives = 258/440 (58%), Gaps = 24/440 (5%) Query: 17 LCLLLVLIGG--FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG----GKVSEVVS 70 + L L GG F + +++ N+ P+ A FV+ + G K+S V++ Sbjct: 11 IAFSLALFGGVTFAQLAQAEPLRIELNNPVIEPMPFAVPDFVAENGGGEDYAAKISRVIA 70 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL + +F I + ++T+ D+ + DW ++ AQ L+TG V G D++ V+FRL Sbjct: 71 ADLAGTGLFAEIPAAAHIARVTSFDAPVSYPDWKAINAQALITGAVQASG-DQIVVKFRL 129 Query: 131 WDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +DV +Q+ G +F + SWR++AH ++D Y ITGE G F+SR++FVSES Sbjct: 130 FDVFSGQQMGEGLQFAGTAQSWRRMAHKVADAAYARITGEGGYFDSRVVFVSESGPKNQR 189 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD-----T 244 L VMD DGAN+ YLT S I+ PRFSP+ ++ + +Y ++YLMD T Sbjct: 190 AKRLGVMDYDGANVAYLTDSAS-IVLAPRFSPSGDRILFTSYT-SGFPQIYLMDVGSLQT 247 Query: 245 R-IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R ++ P +M APRF+ +G+ + S+++ DIY+VD QS +LT+ I Sbjct: 248 RSLEEQPG------TMTFAPRFAPDGRTVVFSLERGGNTDIYTVDTQSGTLSQLTDAPSI 301 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + SYSPD S+IVFESDR G +QLYVM + G + +RIS + Y PVWSP+GD IAF Sbjct: 302 ETAPSYSPDGSKIVFESDRSGTQQLYVMSAGGGEPRRIS-NGAGRYGTPVWSPRGDYIAF 360 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSID 422 TK + +F IGVM DGS+E+LL + PTW+P+GR ++F+R++ G+ G LYS+D Sbjct: 361 TKQNEGRFHIGVMLTDGSEEKLLTASFLDEGPTWAPNGRVIMFTREQAGEGGQPALYSVD 420 Query: 423 LNGRNETLINTPAYASDPQW 442 ++GRN I+T ASDP W Sbjct: 421 ISGRNLRQISTETPASDPAW 440 >gi|310816577|ref|YP_003964541.1| translocation protein TolB precursor [Ketogulonicigenium vulgare Y25] gi|308755312|gb|ADO43241.1| translocation protein TolB precursor [Ketogulonicigenium vulgare Y25] Length = 442 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 171/444 (38%), Positives = 249/444 (56%), Gaps = 19/444 (4%) Query: 11 LNMKINLCLLLVLIGGF--FPT-SIHAFVKVATNSANYSPVSIAFTKF----VSIDELGG 63 +N + L L L G F P + +++ P+ IA F E+ Sbjct: 1 MNKFMALVLTAALAGPFAAMPALAQQGPLRITVTQGVIEPLPIAVPTFQAETAGAAEVAN 60 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++S +V++DL S +F + SF D + DW ++ Q LVTG V G ++ Sbjct: 61 QISRLVAQDLTGSGLFREVPASSFISNHAMFDQAVAYADWRAINVQGLVTGAVSVSG-NQ 119 Query: 124 LRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L V+FRL+D+ ++ G +F S WR++AH +SD +Y ITGE G F+SR++FV+E Sbjct: 120 LTVKFRLYDIYTGAELGQGLQFNGSVQGWRRMAHKVSDAVYSRITGESGYFDSRVVFVAE 179 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S + +MD DGAN++YLT + + ++ PRFSP ++ Y +Y R+ L+ Sbjct: 180 SGPKDNRLKRVAIMDYDGANVQYLTDA-NSLVLAPRFSPTGAQILYTSYQ-SGAPRINLL 237 Query: 243 DTRIDRA---PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 D A P +G M +PRFS +G + S+ DIY D+++ RLTN Sbjct: 238 DVASASARQLPTEVGE---MAFSPRFSRDGGSVIYSLANGGNTDIYRTDIRTGGHTRLTN 294 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I S S SPD SQIVFESDR G QLYVM +NG + +RIS + Y PVWSP+GD Sbjct: 295 APSIETSPSLSPDGSQIVFESDRSGTTQLYVMGANGGEARRISFG-DGRYGTPVWSPRGD 353 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KL 418 +IAFTK G +F IGVM+ DGS+ERLL + PTW+P+GR L+F+R+ G+TG + Sbjct: 354 MIAFTKQQGGRFHIGVMRTDGSEERLLTSSFLDEGPTWAPNGRMLMFTRETQGETGGPSI 413 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 YS+D++GRN + T ++ASDP W Sbjct: 414 YSVDISGRNLRQVATGSFASDPSW 437 >gi|114771186|ref|ZP_01448606.1| translocation protein TolB precursor [alpha proteobacterium HTCC2255] gi|114548111|gb|EAU50998.1| translocation protein TolB precursor [alpha proteobacterium HTCC2255] Length = 441 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 167/407 (41%), Positives = 250/407 (61%), Gaps = 13/407 (3%) Query: 47 PVSIAFTKFVSIDELG----GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ IA ++F +I + +++ V+ DL S +F I + + TN ++ +F D Sbjct: 40 PMPIALSQFTAIGDTTPQYVDQITSVIMADLVGSGLFREIPRSAHVSANTNFNNPVKFSD 99 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDD 161 W + L+TG V +G D+L ++FRL+DV +K + G +F +S +WR++AH ISD Sbjct: 100 WRVINVDALITGSVNIQG-DKLILQFRLFDVFAQKPLGEGLQFQASIGNWRRMAHKISDA 158 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y +TGE F+SR++++SE K L +MD DGAN R+LT D I+ PRFSP Sbjct: 159 VYSRLTGEAAYFDSRVVYISEQGPKNARKKRLTIMDYDGANSRFLTDDND-IVLAPRFSP 217 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKDE 280 N +++ Y +Y+ + +VYLM+ +D KR+ + + M APRFS +G+ ++S+ Sbjct: 218 NNEEIVYTSYE-TGVPKVYLMN--VDTLNKRVLDDQPGMTFAPRFSPDGRNVVMSLTDRG 274 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 DIYSV L+S RLT+ I+ + S+SPD QIVFESDR G++Q+Y+M S+G D R Sbjct: 275 NTDIYSVVLESRRKTRLTSGPSIDTAPSFSPDGKQIVFESDRGGRQQIYIMSSSGGDATR 334 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 IS K SY PVWSP+GD+IAFTK S +F IGVM+ DGS ERLL + PTWSP+ Sbjct: 335 ISFGK-GSYGTPVWSPRGDMIAFTKISQGRFHIGVMRTDGSNERLLTASFLDEGPTWSPN 393 Query: 401 GRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 GR ++F R+ G G+ +++S+D+ GRN + T SDP W G + Sbjct: 394 GRVIMFFRESAGTNGAPEIFSVDVTGRNLKRVKTIQNGSDPSWSGLL 440 >gi|221640124|ref|YP_002526386.1| translocation protein TolB [Rhodobacter sphaeroides KD131] gi|221160905|gb|ACM01885.1| Protein tolB precursor [Rhodobacter sphaeroides KD131] Length = 435 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 164/402 (40%), Positives = 235/402 (58%), Gaps = 10/402 (2%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV+ EL ++ V++ DL + +F I + ++T+ ++ + D Sbjct: 33 PLPFAVPDFVAENAGASELARDMARVIASDLSGTGLFREIPASAHISRVTSFEAPVAYGD 92 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V G DR+ V+FRL+DV D+ G +F S + WR++AH ++D Sbjct: 93 WKAINAQALITGSVSASG-DRVVVKFRLYDVFSDQPLGEGLQFAGSASGWRRMAHKVADV 151 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 Y ITGE G F+SR++FVSES L VMD DGAN++YLT S I+ PRFSP Sbjct: 152 AYSRITGEGGYFDSRVVFVSESGPKNARAKRLAVMDYDGANVQYLTDS-SSIVLAPRFSP 210 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 ++ + +Y R+YLMD +M APRF+ +G+ S+++ Sbjct: 211 TGDRILFTSYS-TGFPRIYLMDVGSLATRGLAEQPGTMTFAPRFAPDGRTVAFSLEQGGN 269 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY++D S +LTN+ I + SYSPD SQIVFESDR G +QLY+M + G + +RI Sbjct: 270 TDIYTLDTGSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQLYIMPAGGGEPRRI 329 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S + Y PVWSP+GDLIAFTK +F IGVM+ DGS+ERLL + PTW+P+G Sbjct: 330 S-NGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNG 388 Query: 402 RSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 R L+F+R+ G G LYS+D++GRN + ASDP W Sbjct: 389 RVLMFTREGAGAGGQPALYSVDISGRNLKKVPLSVPASDPAW 430 >gi|77464240|ref|YP_353744.1| translocation protein TolB [Rhodobacter sphaeroides 2.4.1] gi|126463082|ref|YP_001044196.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17029] gi|332559129|ref|ZP_08413451.1| translocation protein TolB [Rhodobacter sphaeroides WS8N] gi|119371057|sp|Q3J041|TOLB_RHOS4 RecName: Full=Protein tolB; Flags: Precursor gi|166229984|sp|A3PM58|TOLB_RHOS1 RecName: Full=Protein tolB; Flags: Precursor gi|77388658|gb|ABA79843.1| Probable TolB protein precursor [Rhodobacter sphaeroides 2.4.1] gi|126104746|gb|ABN77424.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332276841|gb|EGJ22156.1| translocation protein TolB [Rhodobacter sphaeroides WS8N] Length = 444 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 164/402 (40%), Positives = 235/402 (58%), Gaps = 10/402 (2%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV+ EL ++ V++ DL + +F I + ++T+ ++ + D Sbjct: 42 PLPFAVPDFVAENAGASELARDMARVIASDLSGTGLFREIPASAHISRVTSFEAPVAYGD 101 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V G DR+ V+FRL+DV D+ G +F S + WR++AH ++D Sbjct: 102 WKAINAQALITGSVSASG-DRVVVKFRLYDVFSDQPLGEGLQFAGSASGWRRMAHKVADV 160 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 Y ITGE G F+SR++FVSES L VMD DGAN++YLT S I+ PRFSP Sbjct: 161 AYSRITGEGGYFDSRVVFVSESGPKNARAKRLAVMDYDGANVQYLTDS-SSIVLAPRFSP 219 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 ++ + +Y R+YLMD +M APRF+ +G+ S+++ Sbjct: 220 TGDRILFTSYS-TGFPRIYLMDVGSLATRGLAEQPGTMTFAPRFAPDGRTVAFSLEQGGN 278 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY++D S +LTN+ I + SYSPD SQIVFESDR G +QLY+M + G + +RI Sbjct: 279 TDIYTLDTGSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQLYIMPAGGGEPRRI 338 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S + Y PVWSP+GDLIAFTK +F IGVM+ DGS+ERLL + PTW+P+G Sbjct: 339 S-NGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNG 397 Query: 402 RSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 R L+F+R+ G G LYS+D++GRN + ASDP W Sbjct: 398 RVLMFTREGAGAGGQPALYSVDISGRNLKKVPLSVPASDPAW 439 >gi|260431108|ref|ZP_05785079.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter lacuscaerulensis ITI-1157] gi|260414936|gb|EEX08195.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter lacuscaerulensis ITI-1157] Length = 439 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 161/381 (42%), Positives = 237/381 (62%), Gaps = 8/381 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S V++ DL + +F I+ ++F ++ + ++ +F DW ++ A LVTG V G + L Sbjct: 59 ISRVIAADLTGTGLFREIAPEAFISRVNSFEAPIQFADWKAINADALVTGAVNLSG-NTL 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FR+WDV +++ FS P WR++AH ++D +Y ITGE G F+SR+ FVSES Sbjct: 118 TVRFRVWDVFSGQELGNGLQFSGPTDGWRRMAHKVADQVYSRITGEGGYFDSRVAFVSES 177 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + L +MD DGAN++YLT S I+ PRFSP ++ Y +Y+ R+YL+D Sbjct: 178 GPKDQRRKRLAIMDYDGANVQYLTDSA-AIVLAPRFSPAGDRLLYTSYESGRP-RIYLLD 235 Query: 244 T-RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 R+ + + + +M +PRFS +G+ + S+ + D++ +DL S + RLTNT Sbjct: 236 VGRVKKQELKTQD-GTMSFSPRFSPDGRSIVYSLTQGGNTDLWKMDLASGQSVRLTNTPA 294 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I + SY+PD S+IVFESDR G QLYVM +NG + RIS + Y PVWSP+GDLIA Sbjct: 295 IETAPSYAPDGSRIVFESDRSGTPQLYVMPANGGEATRISF-GQGRYGTPVWSPRGDLIA 353 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSI 421 FTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G S LYS+ Sbjct: 354 FTKQNKGRFHIGVMRVDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRSSLYSV 413 Query: 422 DLNGRNETLINTPAYASDPQW 442 D++GRN + TP SDP W Sbjct: 414 DISGRNLRPVRTPDGGSDPSW 434 >gi|146276614|ref|YP_001166773.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17025] gi|166229985|sp|A4WQ04|TOLB_RHOS5 RecName: Full=Protein tolB; Flags: Precursor gi|145554855|gb|ABP69468.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 444 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 163/402 (40%), Positives = 234/402 (58%), Gaps = 10/402 (2%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A FV+ +L ++ V++ DL + +F I + ++T+ D+ + D Sbjct: 42 PLPFAVPNFVAETSGASQLAQDMARVIAADLSGTGLFREIPASAHISRVTSFDAPIAYND 101 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V G DR+ V+FRL DV D+ G +F S + WR++AH ++D Sbjct: 102 WKAINAQALITGSVSASG-DRVVVKFRLHDVFSDQPLGEGLQFAGSASGWRRMAHKVADV 160 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 Y ITGE G F+SR++FVSE+ L VMD DGAN++YLT S I+ PRFSP Sbjct: 161 AYSRITGEGGYFDSRVVFVSETGPKNARAKRLAVMDYDGANVQYLTDS-SSIVLAPRFSP 219 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 ++ + +Y R+YLMD +M APRF+ +G+ S+++ Sbjct: 220 TGDRILFTSYS-TGFPRIYLMDVGSLATRSLAEQPGTMTFAPRFAPDGRTVAFSLEQGGN 278 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY++D S +LTN+ I + SYSPD SQIVFESDR G +QLY+M + G + +RI Sbjct: 279 TDIYTLDTASGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQLYIMPAGGGEPRRI 338 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S + Y PVWSP+GDLIAFTK +F IGVM+ DGS+ERLL + PTW+P+G Sbjct: 339 S-NGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNG 397 Query: 402 RSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 R L+F+R+ G G LYS+D++GRN + ASDP W Sbjct: 398 RVLMFTREGAGAGGQPALYSVDISGRNLKKVPLSVPASDPAW 439 >gi|56697941|ref|YP_168312.1| translocation protein TolB [Ruegeria pomeroyi DSS-3] gi|67461891|sp|Q5LNU4|TOLB_SILPO RecName: Full=Protein tolB; Flags: Precursor gi|56679678|gb|AAV96344.1| TolB, putative [Ruegeria pomeroyi DSS-3] Length = 439 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 159/379 (41%), Positives = 235/379 (62%), Gaps = 10/379 (2%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL S +F I ++ ++T+ D+ +F DW ++ AQ L+TG V G +RL V Sbjct: 62 VLAADLTGSGLFREIPSTAYISQVTSFDAPVQFADWKAINAQALITGAVSVSG-NRLTVR 120 Query: 128 FRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRLWDV ++ G +F + WR+++H ++D +Y ITGE G F+SR+ FVSES Sbjct: 121 FRLWDVFAGAELGSGLQFAGTTDGWRRMSHKVADAVYSRITGESGYFDSRVAFVSESGPK 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L +MD DGAN++YLT S I+ PRFSP +V Y +Y R++++D + Sbjct: 181 DQRRKRLAIMDYDGANVQYLTDS-SSIVLAPRFSPTGDRVLYTSYQG-GFPRIHILD--V 236 Query: 247 DRAPKRIGNFR--SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + +R+ + +M APRFS +G+ L S+ + D+Y++++ S + RLT+ I Sbjct: 237 GQVQQRVLQSQDGTMSFAPRFSPDGQTVLFSLAQGGNTDLYAMNIASGQSTRLTSAPSIE 296 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + SY+PD S+IVFESDR G QLYVM + G + RIS + Y PVWSP+GDLIAFT Sbjct: 297 TAPSYAPDGSRIVFESDRSGTPQLYVMSAAGGEATRISF-GQGRYGTPVWSPRGDLIAFT 355 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDL 423 K S +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G + LYS+D+ Sbjct: 356 KQSKGRFHIGVMRADGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRAALYSVDI 415 Query: 424 NGRNETLINTPAYASDPQW 442 +GRN + TP SDP W Sbjct: 416 SGRNLRPVRTPDGGSDPSW 434 >gi|114798605|ref|YP_758888.1| tolB protein [Hyphomonas neptunium ATCC 15444] gi|114738779|gb|ABI76904.1| tolB protein [Hyphomonas neptunium ATCC 15444] Length = 451 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 165/443 (37%), Positives = 252/443 (56%), Gaps = 22/443 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVVSKDL 73 L ++++ +G P S V+V + N+ P IA F E+ +++EVV DL Sbjct: 9 LAVIMLAVGLVAPASAQLQVRV--DEGNFKPTPIAIPDFQVTGANTEIARQITEVVRADL 66 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + +F++ + SF Q+ + ++ PRF DW + LV G + +L V FRLWDV Sbjct: 67 ASTGLFDMQNPASFIQRDLSINAEPRFADWKIIRTDALVVGAFEELPDGKLAVSFRLWDV 126 Query: 134 KDRKQI-----IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 + + G++ ++P +WR+IAH I+D IY +TGE F++RI++++E+ Sbjct: 127 YGGELMRINGEPGRRLTTTPENWRRIAHKIADSIYTRLTGEDPYFDTRIVYIAETGPKTE 186 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD DGAN +YLT R +L PRFSP+ Q++ Y +++ RVYL + R Sbjct: 187 RVKRLAIMDSDGANQQYLTSGRSTVL-TPRFSPSSQEITYMSFEGGRP-RVYLFNIETGR 244 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +GNF M APRF ++G+ L+S + D+Y ++L++ + RLT+ I+ S S Sbjct: 245 Q-ELLGNFPGMTFAPRFGTDGQSVLLSQAQRGNTDVYIMNLRTRESRRLTDHPAIDTSPS 303 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS---------YFDPVWSPQGD 359 SPD +VF SDR G QLY+M ++GS + S ++ + Y PVWSP+GD Sbjct: 304 MSPDGKSVVFNSDRGGTPQLYIMNTDGSPRACASGGRDTACRITFGRGRYSTPVWSPRGD 363 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 LIAFTK G KF IGV+ DG ERLL E + P WSP+GR ++F R+ G++L+ Sbjct: 364 LIAFTKQEGGKFYIGVIGTDGKGERLLSESYLDEGPDWSPNGRVIVFFRENRPGAGAQLW 423 Query: 420 SIDLNGRNETLINTPAYASDPQW 442 S+DL+GRNE + T ASDP W Sbjct: 424 SVDLSGRNERRVMTQTDASDPAW 446 >gi|269959053|ref|YP_003328842.1| translocation protein [Anaplasma centrale str. Israel] gi|269848884|gb|ACZ49528.1| translocation protein [Anaplasma centrale str. Israel] Length = 441 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 157/388 (40%), Positives = 232/388 (59%), Gaps = 12/388 (3%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 E+G VV DL + +F+ + T P+ +P W S+G VLVTG + + Sbjct: 55 EVGKSCVRVVLHDLNSTGIFDASWKLPAGGFGTTPEGMPDSDAWTSVGRDVLVTGSIKEF 114 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 +DR++V +WDV +Q+ GK F + +WR+ AH++SD IY ITGE G FN+RI + Sbjct: 115 SQDRVKVRLFIWDVASGRQLSGKSFNFAVGNWRRAAHSMSDSIYSRITGEGGYFNTRIAY 174 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR 238 V+E+ + G + +MD+DGAN Y+T S + + PRFSP+ + + Y +Y + Sbjct: 175 VAETGLPG--SRRIAIMDQDGANNVYIT-STGEFVSTPRFSPDARSLVYMSYAKSSGSIV 231 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++ ++T A +G R + +PRFS +GK L+S A +IYS+DL+S + RLT Sbjct: 232 LHDLETGYSTA---LGGVRGVNSSPRFSPDGKHVLLSESAQGATNIYSIDLKSGKSTRLT 288 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N IN SASYSPD IVF SDR G+ QLYVM ++G++Q+RIS K Y PVWSP+G Sbjct: 289 NNKSINTSASYSPDKKSIVFNSDRSGRPQLYVMNADGTNQRRISSGK-GGYSAPVWSPRG 347 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG--- 415 D IAFTK G+ F IGVMK DGS ERLL + + +P+WSP+GR ++F+++ Sbjct: 348 DWIAFTKADGKNFHIGVMKPDGSGERLLAKGHMVDSPSWSPNGRVILFTQQDPPSATHPF 407 Query: 416 -SKLYSIDLNGRNETLINTPAYASDPQW 442 S+L ++D+ G N ++ P AS+ W Sbjct: 408 RSRLVTVDITGTNTQTLDVPTNASNAHW 435 >gi|254454187|ref|ZP_05067624.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 238] gi|198268593|gb|EDY92863.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 238] Length = 441 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 156/386 (40%), Positives = 229/386 (59%), Gaps = 6/386 (1%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 + + +S V+++DL + +F I +F + S F DW ++ AQ LVTG V Sbjct: 55 EGMAADISRVITEDLNGTGLFRQIPASAFISTPASFGSAIAFPDWRAINAQALVTGAVAV 114 Query: 119 EGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +++ V+FRL+DV ++ G +F + WR++AH +SD +Y ITGE G F+SR+ Sbjct: 115 NG-NQVTVKFRLYDVFSGGEMGEGLQFAGTTDGWRRMAHKVSDAVYSRITGEAGYFDSRV 173 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 ++V+E+ L +MD DGAN++YLT S I+ PRFSP+ ++ Y +Y+ Sbjct: 174 VYVAETGPKDDRAKRLAIMDYDGANVQYLTDS-SAIVLAPRFSPSGDRILYTSYE-SGFP 231 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 R+ ++D + M +PRFS +G++ + S+ DIY DL + RL Sbjct: 232 RINILDVATVVRQQMTTAAGEMAFSPRFSRDGRQVIYSLANGGNTDIYRTDLATGQNTRL 291 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TNT I S S+SPD SQIVFESDR G +QLYVM +NG + +RIS + Y PVWSP+ Sbjct: 292 TNTPAIETSPSFSPDGSQIVFESDRSGTQQLYVMSANGGEPQRISFEN-GRYGTPVWSPR 350 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 GDLIAFTK +F IGVM+ DG++ERLL + PTW+P+GR ++F+R+ G G+ Sbjct: 351 GDLIAFTKQESGRFHIGVMRTDGTEERLLTSSFLDEGPTWAPNGRVIMFARETQGSDGTT 410 Query: 418 -LYSIDLNGRNETLINTPAYASDPQW 442 LYS+D+ GRN + TP SDP W Sbjct: 411 GLYSVDITGRNLRRVTTPQGGSDPSW 436 >gi|84687705|ref|ZP_01015578.1| translocation protein TolB precursor [Maritimibacter alkaliphilus HTCC2654] gi|84664288|gb|EAQ10779.1| translocation protein TolB precursor [Rhodobacterales bacterium HTCC2654] Length = 444 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 169/452 (37%), Positives = 262/452 (57%), Gaps = 38/452 (8%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----------------S 57 K+NL + LVL+ ++ T +A P+ I T+ V S Sbjct: 3 KLNLLVALVLM------TLAPVFSATTATAQQGPLRIEITEGVIEPLPFAVPTFQAETGS 56 Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 + ++S V++ DL + +F I +F +TN S ++ DW ++ AQ L+TG V Sbjct: 57 AGAIAEEISRVIAADLSGTGLFREIPSSAFIANVTNFASPIQYADWKAVNAQALITGAVS 116 Query: 118 KEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 ++G ++ V+FR++DV ++ G ++ + R+IAH ++D +Y ITGE G F+SR Sbjct: 117 EQG-GQINVKFRVYDVFSGTELGQGLQYTGTTDGVRRIAHKVADTVYSRITGETGYFDSR 175 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ++FVSES + L VMD DGAN++YLT S + +L PRFS + +V Y +Y+ Sbjct: 176 VVFVSESGPKNARRKQLAVMDYDGANVKYLTDS-ESLLLAPRFSKSGDRVLYTSYETGQP 234 Query: 237 LRVYLMDTRIDRAPKRI-----GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 ++Y+++ + A +R GN M +PRFS +G + S+++ +IY +DL Sbjct: 235 -QIYVLE--VGSAQRRALGTGGGN---MAFSPRFSPDGNGLIFSLEQGGNSEIYRMDLNG 288 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 +LTN+ I+ + S+SPD S+IVFESDR G +Q+YVM +NG + +RIS Y Sbjct: 289 GGLVQLTNSPAIDTAPSFSPDGSRIVFESDRSGTQQIYVMSANGGEPQRISFGP-GRYGT 347 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 PVWSP+GDLIAFTK + +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ Sbjct: 348 PVWSPRGDLIAFTKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRESQ 407 Query: 412 GDTGSK-LYSIDLNGRNETLINTPAYASDPQW 442 G G+ LYS+D++GRN + TP ASDP W Sbjct: 408 GAEGAPGLYSVDISGRNLRRVPTPDAASDPSW 439 >gi|83943918|ref|ZP_00956375.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36] gi|83954491|ref|ZP_00963202.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1] gi|83840775|gb|EAP79946.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1] gi|83845165|gb|EAP83045.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36] Length = 440 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 168/436 (38%), Positives = 253/436 (58%), Gaps = 16/436 (3%) Query: 17 LCLLLVLIGGF--FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK----VSEVVS 70 L L L LIGG + +++ P+ A F G+ ++ VVS Sbjct: 6 LSLCLALIGGVASVAQAQDGPLRIEITEGVIEPLPFAVPSFQPESGDAGQMAVDLARVVS 65 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +DL S +F + ++ +++ ++ ++ DW ++ AQ L+TG V G + L V+FRL Sbjct: 66 EDLVGSGLFREVPASAYISTVSDFNAPIQYADWKAINAQALITGAVSVSG-NTLNVKFRL 124 Query: 131 WDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +DV ++ G +F + WR++AH ++D +Y ITGE G F+SR+++VSE+ Sbjct: 125 YDVFSGAELGSGLQFSGTVDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVSETGPKDDR 184 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L VMD DGAN+RYLT S I+ PRFSP+ ++ Y +Y+ R+Y++D I Sbjct: 185 AKRLAVMDYDGANVRYLTDS-SSIVLAPRFSPSGDRILYTSYE-SGFPRIYVLD--IGSV 240 Query: 250 PKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 +R+ +M APRFS +G + S+ + DIY++D+ + + RLTNT I + Sbjct: 241 QRRVLESAEGTMSFAPRFSPSGNTVVYSLTQGGNTDIYTMDINTGQSTRLTNTPAIETAP 300 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD S+IVFESDR G +QLY+M + G + RIS E Y PVWSP+GDL+AFTK + Sbjct: 301 SYSPDGSRIVFESDRSGSQQLYIMPATGGEATRISF-GEGRYGTPVWSPRGDLVAFTKQN 359 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGR 426 +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G G S LYS+D++GR Sbjct: 360 KGRFHIGVMRLDGSEERLLTASFLDEGPTWAPNGRVIMFARETQGAGGASSLYSVDISGR 419 Query: 427 NETLINTPAYASDPQW 442 N + T SDP W Sbjct: 420 NLKPVRTQEGGSDPSW 435 >gi|89068040|ref|ZP_01155457.1| translocation protein TolB precursor [Oceanicola granulosus HTCC2516] gi|89046279|gb|EAR52336.1| translocation protein TolB precursor [Oceanicola granulosus HTCC2516] Length = 446 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 159/416 (38%), Positives = 243/416 (58%), Gaps = 16/416 (3%) Query: 36 VKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 +++ N P+ A F + L +S +V++DL + +F I +F ++ Sbjct: 33 LRITVTDPNVEPLPFAIPAFEAETAGAEGLASDISRLVAQDLVNTGLFREIPSTAFVSQL 92 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPAS 150 T+ + DW ++ AQ L+TG V G ++ V+FRL+DV +++ G++ + Sbjct: 93 TSFAQPVAYTDWRTINAQALITGAVAVNGG-QVTVKFRLYDVFSGQELGAGQQLVGTTDG 151 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH ++D +Y ITGE G F+SR++FVSE+ + L +MD DGAN++YLT S Sbjct: 152 WRRMAHKVADQVYSRITGESGYFDSRVVFVSETGPKNDRRKRLAIMDYDGANVQYLTDS- 210 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI---DRAPKRIGNFRSMILAPRFSS 267 I+ PRFSP +V Y ++D R+ +D + P + G M +PRFS Sbjct: 211 GSIVLAPRFSPTGDRVIYTSWD-SGFPRINAIDVGTVSRQQIPVQAGE---MAFSPRFSR 266 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G++ + S+ + +DI+ D+ + +RLT+ I + S SPD +IVFESDR G +Q Sbjct: 267 DGRQVIYSLSEGGNIDIWRTDITTGQHQRLTSAPSIETAPSLSPDGQRIVFESDRSGSQQ 326 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LYVM G + +RIS E Y PVWSP+GD+IAFTK +F IGVM+ DGS+ERLL Sbjct: 327 LYVMPVTGGEPQRISF-GEGRYGSPVWSPRGDMIAFTKQHAGRFHIGVMRTDGSEERLLT 385 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDPQW 442 + PTWSP+GR L+FSR+ G G+ +YS+D++GRN + TPA+ASDP W Sbjct: 386 ASFLDEGPTWSPNGRVLMFSRETQGADGAPAIYSVDVSGRNLRRVTTPAFASDPSW 441 >gi|255262012|ref|ZP_05341354.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium sp. R2A62] gi|255104347|gb|EET47021.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium sp. R2A62] Length = 441 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 156/388 (40%), Positives = 235/388 (60%), Gaps = 6/388 (1%) Query: 57 SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 S ++ +S V+++DL + +F I +F +I+ + +F DW ++ Q LVTG V Sbjct: 53 SAAQVAADLSRVIAEDLTGTGLFRQILASAFISQISAFSAPIQFADWRAINTQALVTG-V 111 Query: 117 IKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + D+L V+FRL+DV ++ G++ + + WR++AH +SD +Y ITGE G F+S Sbjct: 112 VSVNGDQLTVKFRLYDVFSGAELGAGQQLAGTVSGWRRMAHKVSDQVYSRITGEGGYFDS 171 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R++FVSE+ + L +MD DGAN+++LT S I+ PRFSPN +V Y +Y+ Sbjct: 172 RVVFVSETGPKNDRRKRLAIMDYDGANVQFLTDSAS-IVLAPRFSPNGDRVLYTSYE-TG 229 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 R+ ++D + M +PRFS +G++ + S+ DIY DL S + Sbjct: 230 FPRINILDVASVGRQQLATADGEMAFSPRFSRDGRQVIYSIANGGNTDIYRSDLASGSNA 289 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLT+ I + S+SPD SQIVFESDR G +QLY+M ++G + +RIS + Y PVWS Sbjct: 290 RLTSAPSIETAPSFSPDGSQIVFESDRSGTQQLYIMSASGGEPRRISF-GDGRYGTPVWS 348 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 P+GDL+AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G G Sbjct: 349 PRGDLVAFTKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGADG 408 Query: 416 S-KLYSIDLNGRNETLINTPAYASDPQW 442 + LYS+D+ GRN + T ASDP W Sbjct: 409 APALYSVDITGRNLKRVTTSNAASDPSW 436 >gi|254486268|ref|ZP_05099473.1| Tol-Pal system beta propeller repeat protein TolB [Roseobacter sp. GAI101] gi|214043137|gb|EEB83775.1| Tol-Pal system beta propeller repeat protein TolB [Roseobacter sp. GAI101] Length = 430 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 159/382 (41%), Positives = 239/382 (62%), Gaps = 10/382 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++ VVS+DL S +F I +F +++ ++ ++ DW ++ AQ L+TG V G + L Sbjct: 50 LARVVSEDLVGSGLFREIPASAFISTVSDFNAPVQYADWKAINAQALITGAVNVSG-NTL 108 Query: 125 RVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V+FRL+DV ++ G +F + WR++AH ++D +Y ITGE G F+SR+++VSE+ Sbjct: 109 SVKFRLYDVFSGAELGSGLQFQGTVDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVSET 168 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + L VMD DGAN+RYLT S I+ PRFSP ++ Y +Y+ R+Y++D Sbjct: 169 GPKDGRQKRLAVMDYDGANVRYLTDS-TSIVLAPRFSPTGDRILYTSYE-SGFPRIYVLD 226 Query: 244 TRIDRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 I +R+ +M APRFS +G+ + S+ + DIY++D+ + + RLTNT Sbjct: 227 --IGSVQRRVLESADGTMSFAPRFSPSGQTVVYSLTQGGNTDIYTMDINTGQSVRLTNTP 284 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I + SYSPD S+IVFESDR G +QLY+M ++G + +RIS E Y PVWSP+GDL+ Sbjct: 285 AIETAPSYSPDGSRIVFESDRSGTQQLYIMPASGGEAQRISF-GEGRYGTPVWSPRGDLV 343 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYS 420 AFTK + +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G G S LYS Sbjct: 344 AFTKQNKGRFHIGVMRLDGSEERLLTASFLDEGPTWAPNGRVIMFARETQGAGGSSSLYS 403 Query: 421 IDLNGRNETLINTPAYASDPQW 442 +D++GRN + T SDP W Sbjct: 404 VDISGRNLKPVRTQEGGSDPSW 425 >gi|259417642|ref|ZP_05741561.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp. TrichCH4B] gi|259346548|gb|EEW58362.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp. TrichCH4B] Length = 441 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 162/403 (40%), Positives = 242/403 (60%), Gaps = 12/403 (2%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A F++ + ++ V+++DL S +F I + ++ T+ D+ F D Sbjct: 39 PLPFAVPDFIAESPAAAQYSADIARVIAEDLVGSGLFREIPKVAYISPYTDFDAAVNFTD 98 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V G +R+ V FR +DV +++ G + + WR+I H ++D Sbjct: 99 WKAINAQALITGSVSLSG-NRITVRFRAYDVFAGQELGSGLQLSGTTDGWRRIGHKVADT 157 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 IY +TGE G F+SR++FVSE+ K L +MD DGAN++YLT S + I+ PRFSP Sbjct: 158 IYSRLTGESGYFDSRVVFVSETGPKDDRKKRLAIMDYDGANVQYLTNS-ESIVLAPRFSP 216 Query: 222 NQQKVAYATYDDEDILRVYLMDT-RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 +V Y +Y+ +++++D R+ R GN SM APRF+ NG + S Sbjct: 217 TGDRVLYTSYE-SGFPQIHVLDVGRVQRRILSAGN-GSMSFAPRFAPNGHTIVYSQSAGG 274 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D++S+D+ S +RLT+ I + S+SPD SQ+VFESDR G QLYVM +G + KR Sbjct: 275 NTDLFSMDINSGNPQRLTSAPSIETAPSFSPDGSQLVFESDRSGTSQLYVMPVSGGEAKR 334 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 IS + Y PVWSP+GD IAFTK + +F IGVM+ DGS+ERLL + PTWSP+ Sbjct: 335 ISF-GQGRYGTPVWSPRGDYIAFTKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPN 393 Query: 401 GRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 GR ++F+R+ G +G ++LYS+D++GRN + TP ASDP W Sbjct: 394 GRVIMFTRETQGASGQARLYSVDISGRNLKPVKTPDGASDPSW 436 >gi|163745825|ref|ZP_02153184.1| translocation protein TolB precursor [Oceanibulbus indolifex HEL-45] gi|161380570|gb|EDQ04980.1| translocation protein TolB precursor [Oceanibulbus indolifex HEL-45] Length = 448 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 163/426 (38%), Positives = 248/426 (58%), Gaps = 16/426 (3%) Query: 29 PTSIHA-FVKVATNSANYSPVSIAFTKFVSIDELGGK----VSEVVSKDLQRSDVFNLIS 83 P HA +++ + P+ A F G+ ++ VVS+DL + +F I Sbjct: 22 PNQSHAQPLRIVIDDPTIEPLPFAVPSFQPESGEAGQMAVDLARVVSEDLTGTGLFREIP 81 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII--- 140 ++ +++ ++ + DW ++ AQ L+TG V G + + V+FR++DV ++++ Sbjct: 82 ASAYISTVSDFNAPVEYADWKAINAQALITGAVNVSG-NSVNVKFRVYDVFSGEELLDGR 140 Query: 141 ---GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 G +F + WR++AH ++D +Y ITGE G F+SR+++VSE+ + L VMD Sbjct: 141 GQGGLQFTGTVDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVSETGPKDARQKRLAVMD 200 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DGAN++YLT S I+ PRFSP +V Y +Y+ R+Y++D + Sbjct: 201 YDGANLKYLTES-GSIVLAPRFSPTGDRVLYTSYE-SGFPRIYVLDIGTVQRRALQSAEG 258 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 SM APRFS +G+ + S+ + DI+S+D+ S + RLTNT I + S+SPD S+IV Sbjct: 259 SMAFAPRFSPSGQTVVYSLSQGGNTDIFSMDINSGQSVRLTNTPAIETAPSFSPDGSRIV 318 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 FESDR G QLYVM + G + RIS E Y PVWSP+GDL+AFTK + +F IGVM+ Sbjct: 319 FESDRSGSPQLYVMPATGGEATRISF-GEGRYGTPVWSPRGDLVAFTKQNKGRFHIGVMR 377 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAY 436 DGS+ERLL + PTW+P+GR ++F+R+ G G S LYS+D++GRN + TP Sbjct: 378 LDGSEERLLTASFLDEGPTWAPNGRVIMFARETQGAGGSSSLYSVDISGRNLKPVRTPEG 437 Query: 437 ASDPQW 442 SDP W Sbjct: 438 GSDPSW 443 >gi|15604171|ref|NP_220686.1| translocation protein TolB [Rickettsia prowazekii str. Madrid E] gi|6647892|sp|Q9ZDM5|TOLB_RICPR RecName: Full=Protein tolB; Flags: Precursor gi|3860863|emb|CAA14763.1| TOLB PROTEIN PRECURSOR (tolB) [Rickettsia prowazekii] gi|292571902|gb|ADE29817.1| TolB protein precursor [Rickettsia prowazekii Rp22] Length = 443 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 173/444 (38%), Positives = 250/444 (56%), Gaps = 20/444 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQR 75 ++ I F + +A + P IA KF + D +G V +V+S DL+ Sbjct: 4 IVYFILTLFSLTSYALETINIEHGRVDPTPIAVNKFNADSSNNDLVGRDVVKVISNDLKI 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F IS SF ++ T P F W + A +LV G V +L++ F LWD Sbjct: 64 SGLFRPISSASFIEEQTGIKYKPLFAAWRQINASLLVNGEVKTLENGKLKISFILWDTFL 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 KQ+ G F WR+ AH I+D IY+ ITG+ G F+++I++VSES V IK + + Sbjct: 124 EKQLTGALFEVPTKLWRRAAHKIADKIYEKITGDPGYFDTKIVYVSESTVLPKIKR-IAL 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DGAN +YLT + +L PRF+ + K+ Y +Y + VY D + + +G+ Sbjct: 183 MDYDGANNKYLTNGKSLVL-TPRFAHSADKIFYVSYATKSRALVYEKDLKTGKE-SVVGD 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + APRFS +GK+A++S+ K+ + IY +DL + +LTN IN S SYSPD + Sbjct: 241 FVGISFAPRFSPDGKKAVMSIAKNGSTHIYEIDLATKQLNKLTNGFGINTSPSYSPDGKK 300 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---SGEK-F 371 IVF SD+ G QLY+M S+GSD +RIS SY P WSP+GD IAFTK GEK F Sbjct: 301 IVFNSDKNGVPQLYIMNSDGSDVQRISFG-VGSYASPSWSPRGDYIAFTKIIRQDGEKTF 359 Query: 372 AIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDL 423 IG+MK G+ ER++ + +P WSP+GR ++FS+ K + +K+++IDL Sbjct: 360 NIGIMKAYPQDHGNSERIITSGYLVDSPCWSPNGRVIMFSKGWPSKANAPGKNKIFTIDL 419 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 G NE I TPA ASDP+W G ++ Sbjct: 420 TGHNEREIITPADASDPEWSGILN 443 >gi|86139146|ref|ZP_01057716.1| translocation protein TolB precursor [Roseobacter sp. MED193] gi|85823990|gb|EAQ44195.1| translocation protein TolB precursor [Roseobacter sp. MED193] Length = 446 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 165/406 (40%), Positives = 238/406 (58%), Gaps = 18/406 (4%) Query: 47 PVSIAFTKFVS----IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+ A F++ EL +++ V++ DL + +F I + +++ ++ RF D Sbjct: 44 PLPYAVPSFLAETPAAAELANQITRVIAADLSGTGLFREIPATAHISTVSDFNAPVRFAD 103 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+TG V GK +L V FR +DV D + G +F + WR++AH ++D Sbjct: 104 WKAVNAQALITGSVSVNGK-QLTVRFRGYDVFADNELGAGLQFSGTTDGWRRMAHKVADA 162 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 IY ITGE G F+SR++FVSE+ + L +MD DGA ++YLT S ++ PRFSP Sbjct: 163 IYSRITGESGYFDSRVVFVSETGPKNDRRKRLAIMDYDGAGVQYLTNS-SALVLAPRFSP 221 Query: 222 NQQKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +V Y +Y+ +L V + R+ A K I M APRF+ +G + S Sbjct: 222 TGDRVLYTSYESGFPQIHVLDVGKVQRRVLSADKGI-----MSFAPRFAPDGNTVVYSQA 276 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + D+Y++D+ + A +RLT I + SYSPD SQIVFESDR G QLYVM + G + Sbjct: 277 EGGNTDLYTMDIATGARQRLTRAPSIETAPSYSPDGSQIVFESDRSGTPQLYVMPATGGE 336 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +RIS K Y PVWSP+GDLIAFTK S +F IGVM+ DGS+ERLL + P+W Sbjct: 337 ARRISFGK-GRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRLDGSEERLLTASFLDEGPSW 395 Query: 398 SPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 SP+GR ++F+R+ G G + LYS+D+ GRN + TP ASDP W Sbjct: 396 SPNGRVIMFTRETQGANGRALLYSVDILGRNLKPVRTPDGASDPAW 441 >gi|163738349|ref|ZP_02145764.1| TolB-like protein [Phaeobacter gallaeciensis BS107] gi|161388270|gb|EDQ12624.1| putative protein tolB [Phaeobacter gallaeciensis BS107] Length = 446 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/450 (37%), Positives = 253/450 (56%), Gaps = 19/450 (4%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SI 58 +R ++A L M L V+ + +++ P+ A FV + Sbjct: 1 MRTYLAT-LVMGATLLGAAVMTSALPAQAQDGPLRIEITDGVIEPLPYAVPGFVPETPAA 59 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 EL +S V++ DL + +F + + K+T+ D+ + DW ++ AQ L+TG + Sbjct: 60 AELARDISRVIAADLSGTGLFREVPASAHISKVTDFDAAVSYADWKAVNAQALITGALSV 119 Query: 119 EGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +RL V FR DV K++ G +F + WR++AH ++D IY ITGE G F+SR+ Sbjct: 120 NG-NRLTVRFRGHDVFAEKELGTGLQFSGTTDGWRRMAHKVADVIYSRITGESGYFDSRV 178 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--- 234 +FVSES + L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 179 VFVSESGPKNDRRKRLAIMDYDGANVQYLTNSA-SIVLAPRFSPTGDRVLYTSYESGFPQ 237 Query: 235 -DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +L V + R+ A I M APRF+ +G+ + S + DI+++++ + A Sbjct: 238 IHVLDVGSVQRRVLSADNGI-----MSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGA 292 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 RLT+ I + S+SPD SQIVFESDR G QLYVM + G + +RIS Y PV Sbjct: 293 RTRLTSAPSIETAPSFSPDGSQIVFESDRSGAPQLYVMAATGGEARRISFGA-GRYGTPV 351 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 WSP+GD+IAFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G Sbjct: 352 WSPRGDMIAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGA 411 Query: 414 TG-SKLYSIDLNGRNETLINTPAYASDPQW 442 +G + LYS+D++GRN + TP ASDP W Sbjct: 412 SGRALLYSVDVSGRNLKPVRTPDGASDPAW 441 >gi|126737227|ref|ZP_01752962.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6] gi|126721812|gb|EBA18515.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6] Length = 445 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/383 (40%), Positives = 240/383 (62%), Gaps = 10/383 (2%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 +++ VV+ DL + +F + + K+++ ++ RF DW ++ AQ L+TG V +G ++ Sbjct: 64 EITRVVASDLSGTGLFREVPASAHISKVSDFNAPVRFADWKAVNAQALITGSVSAQG-NQ 122 Query: 124 LRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L V FR +DV K++ G +F + WR++AH ++D IY ITGE G F+SR+++VSE Sbjct: 123 LTVRFRGYDVFAEKELGSGLQFNGTKEGWRRMAHKVADAIYSRITGESGYFDSRVVYVSE 182 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + L +MD DGAN++YLT S ++ PRFSP +V Y +Y+ +++++ Sbjct: 183 TGPKNDRRKRLAIMDYDGANVQYLTDS-SALVLAPRFSPTGDRVLYTSYE-SGFPQIHVL 240 Query: 243 DTRIDRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 D + R +R+ + M APRF+ +G+ + S D++++D+ + + +RLT+ Sbjct: 241 D--VGRVQRRVLSADQGIMTFAPRFAPDGRTVVYSQTAGGNTDLFTMDIANGSRKRLTSA 298 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I + S+SPD SQIVFESDR G +QLYVM ++G + +RIS K Y PVWSP+GDL Sbjct: 299 PSIETAPSFSPDGSQIVFESDRSGSQQLYVMPASGGEARRISFGK-GRYGTPVWSPRGDL 357 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLY 419 IAFTK S +F IGVM+ DGS+ERLL + P+WSP+GR ++F+R+ G G + LY Sbjct: 358 IAFTKQSKGRFHIGVMRTDGSEERLLTASFLDEGPSWSPNGRVIMFTRETQGANGRALLY 417 Query: 420 SIDLNGRNETLINTPAYASDPQW 442 S+D+ GRN + TP ASDP W Sbjct: 418 SVDILGRNLKPVRTPDGASDPAW 440 >gi|163742234|ref|ZP_02149622.1| translocation protein TolB precursor [Phaeobacter gallaeciensis 2.10] gi|161384564|gb|EDQ08945.1| translocation protein TolB precursor [Phaeobacter gallaeciensis 2.10] Length = 446 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 253/450 (56%), Gaps = 19/450 (4%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SI 58 +R ++A L M L V+ + +++ P+ A FV + Sbjct: 1 MRTYLAT-LVMGATLLGAAVMTSALPAQAQDGPLRIEITDGVIEPLPYAVPGFVPETPAA 59 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 EL +S V++ DL + +F + + K+T+ D+ + DW ++ AQ L+TG + Sbjct: 60 AELARDISRVIAADLSGTGLFREVPASAHISKVTDFDAAVSYADWKAVNAQALITGALSV 119 Query: 119 EGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +RL V FR DV K++ G +F + WR++AH ++D IY ITGE G F+SR+ Sbjct: 120 NG-NRLTVRFRGHDVFAEKELGTGLQFSGTTDGWRRMAHKVADVIYSRITGESGYFDSRV 178 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--- 234 +FVSES + L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 179 VFVSESGPKNDRRKRLAIMDYDGANVQYLTNSA-SIVLAPRFSPTGDRVLYTSYESGFPQ 237 Query: 235 -DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +L V + R+ A I M APRF+ +G+ + S + DI+++++ + A Sbjct: 238 IHVLDVGSVQRRVLSADNGI-----MSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGA 292 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 RLT+ I + S+SPD SQIVFESDR G QLYVM + G + +RIS Y PV Sbjct: 293 RTRLTSAPSIETAPSFSPDGSQIVFESDRSGAPQLYVMAATGGEARRISFGA-GRYGTPV 351 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 WSP+GD++AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G Sbjct: 352 WSPRGDMVAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGA 411 Query: 414 TG-SKLYSIDLNGRNETLINTPAYASDPQW 442 +G + LYS+D++GRN + TP ASDP W Sbjct: 412 SGRALLYSVDVSGRNLKPVRTPDGASDPAW 441 >gi|254441731|ref|ZP_05055224.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 307] gi|198251809|gb|EDY76124.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 307] Length = 441 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 156/387 (40%), Positives = 232/387 (59%), Gaps = 8/387 (2%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 D + +S V++ DL + +F I +F + S F DW ++ +Q LVTG V Sbjct: 55 DGMAADISRVIAADLNGTGLFRQIPSSAFISTPASFGSPIAFADWRAINSQALVTGAVAV 114 Query: 119 EGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +++ V+FRL+DV ++ G +F + + WR++AH ++D +Y ITGE G F+SR+ Sbjct: 115 NG-NQVTVKFRLYDVFSGAEMGEGLQFAGTASGWRRMAHKVADAVYSRITGESGYFDSRV 173 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 ++V+E+ + + VMD DGAN++YLT S I+ PRFSP+ ++ Y +Y+ Sbjct: 174 VYVAETGPKDDREKRIAVMDYDGANVQYLTDS-STIVLAPRFSPSGDRILYTSYE-SGFP 231 Query: 238 RVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R+ ++D + R R + M +PRFS +G++ + S+ DIY DL + R Sbjct: 232 RINILDVATVMRQQMRTAD-GEMAFSPRFSRDGRQVIYSLANGGNTDIYRTDLATGQNMR 290 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LTNT I + S+SPD SQIVFESDR G +QLY+M +NG + +RIS Y PVWSP Sbjct: 291 LTNTPAIETAPSFSPDGSQIVFESDRSGTQQLYMMSANGGEPQRISFGN-GRYGTPVWSP 349 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 +GDLIAFTK +F IGVM+ DG++ERLL + PTW+P+GR ++FSR+ G G+ Sbjct: 350 RGDLIAFTKQELGRFHIGVMRTDGTEERLLTSSFLDEGPTWAPNGRVIMFSRETQGSDGT 409 Query: 417 K-LYSIDLNGRNETLINTPAYASDPQW 442 LYS+D+ GRN + TP SDP W Sbjct: 410 TGLYSVDITGRNLRRVTTPQGGSDPSW 436 >gi|254420878|ref|ZP_05034602.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas sp. BAL3] gi|196187055|gb|EDX82031.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas sp. BAL3] Length = 457 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 248/448 (55%), Gaps = 21/448 (4%) Query: 13 MKINLCLLLVLI-----------GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 M++NL L + G P V+V + P+ IA F + Sbjct: 1 MRLNLLLASAAVVAMSVSSAQAQGQTAPAQAGQPVEVEIDQGVLKPLQIAIVPFTG--DH 58 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G +S VVS +L+RS F ++ F + + P F W +GAQ ++ G V G Sbjct: 59 GADISNVVSGNLRRSGFFEPLNPAGFIETGLTLANAPNFPQWTQIGAQAVLYGGVTPRGD 118 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL V FRL+D + Q++ +F ++ WR+IAH ISD IYQ +TGE G F+SR++FVS Sbjct: 119 GRLDVGFRLYDPYRQCQLVSYQFTATQEQWRRIAHKISDVIYQRMTGETGFFDSRVVFVS 178 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ-QKVAYATYDDEDILRVY 240 E N L + D+DG N YLT D+I+ PRFS +Q ++ Y +D R+Y Sbjct: 179 EEGTQLNRINRLTIADQDGFNPTYLTQG-DEIIMSPRFSTSQPDEITYVAL-GKDYSRIY 236 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L + R + +G F +LAPRFS++G + S+ + DIY +DL+S RLT+ Sbjct: 237 LRNLTTGRT-ESLGEFDGQVLAPRFSNDGNKIAFSIIRGGNTDIYVMDLRSRQLSRLTSD 295 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S S+SPD SQIVF SDR G+ +LYVM+++GS Q+ IS+ +Y P WSP G+L Sbjct: 296 PGIDTSPSFSPDGSQIVFNSDRSGQARLYVMRADGSGQRPISRGG-GTYTAPAWSPTGNL 354 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-KDGDTGSKLY 419 IAFTK G +F+ GVM DGS ER+L + P W+P+GR ++F+R+ + GDT +L+ Sbjct: 355 IAFTKSGGGRFSTGVMNADGSGERILSSSYFEEGPNWAPNGRYVMFARQTRGGDT--RLW 412 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 ++DL+GR +DP W +D Sbjct: 413 TVDLSGRVVAQAGYNGRGTDPAWSPLLD 440 >gi|83859800|ref|ZP_00953320.1| translocation protein TolB precursor [Oceanicaulis alexandrii HTCC2633] gi|83852159|gb|EAP90013.1| translocation protein TolB precursor [Oceanicaulis alexandrii HTCC2633] Length = 448 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 167/445 (37%), Positives = 248/445 (55%), Gaps = 21/445 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKD 72 + L+V+ G F + V P IA F+ D E+G +S V+S + Sbjct: 11 ILALIVMAGSAF---AQTPLVVDVTEGTLDPTPIAIPDFLGADNREAEIGADISRVISNN 67 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQ S +F + D+F + IT+ + PRF DW + A L+ G V + DR+ V FRLWD Sbjct: 68 LQTSGLFAPVDPDAFIEDITDINLRPRFGDWRVINASALLVGEVTIDENDRMLVAFRLWD 127 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKN 191 +Q+ G +F +SP +WR+IAH +SD +Y+ +TGE G F++RI++VSE +G Sbjct: 128 ANTEQQLQGLQFVTSPDNWRRIAHKVSDAVYERLTGESGYFDTRIVYVSEGDGPNGEPIR 187 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L VMD+DGAN +LT R + P +SP+ Q++ Y ++ D YL D R Sbjct: 188 RLAVMDQDGANPSFLT-DRSYMALLPNYSPSAQQITYVSFRDGRATS-YLYDLETGRQEA 245 Query: 252 RIGNFRSMI-----LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + S+ L+ RF NG+ ++S ++ D++ DL+S +LT ++ Sbjct: 246 LFDSGPSLASEGQSLSARFHPNGRELVVSAERHSGHDLFKFDLRSRTLRQLTTHPADDVE 305 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SY+PD Q+VF S R G+ QLYVM ++G+D +RI+ E Y PVWSP+GDLIAFTK Sbjct: 306 PSYAPDGEQVVFSSSRGGQSQLYVMNADGTDPQRITF-GEGRYTTPVWSPRGDLIAFTKQ 364 Query: 367 SGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFS---RKKDGDTGSKLYSID 422 +F +GV+ DGS +ER+L E + P WSP+GR L+F+ R ++G T S ++SID Sbjct: 365 RSGQFMLGVVAADGSGEERILYEGYFVDTPAWSPNGRVLLFTRGDRTREGTTYS-IWSID 423 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G N + T ASDP W +D Sbjct: 424 LAGFNLRRLPTQGEASDPAWSPLID 448 >gi|84516652|ref|ZP_01004011.1| translocation protein TolB precursor [Loktanella vestfoldensis SKA53] gi|84509688|gb|EAQ06146.1| translocation protein TolB precursor [Loktanella vestfoldensis SKA53] Length = 438 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 168/437 (38%), Positives = 252/437 (57%), Gaps = 12/437 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEV 68 MK L LL+ L+ + +++ P++ A F + +L +++ + Sbjct: 2 MKRILTLLIALMFAGPAFAQGGPLRLTITDGVIEPITFAVPSFEAETPQAGQLASELTRL 61 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+++L + +F + +F ++ + F DW ++ AQ LV G V G D++ V+F Sbjct: 62 VAQNLSGTGLFREVPASAFISQVGSFAQPVAFADWRAVNAQALVIGAVSMTG-DQVNVKF 120 Query: 129 RLWDVKDRKQIIGK-KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RL+DV +++ G +F + A WR++ H +SD +Y ITGE G F+SR++FV+ES Sbjct: 121 RLFDVFSGQELGGGLQFAGTTAGWRRMGHKVSDAVYSRITGEGGYFDSRVVFVAESGPKD 180 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L VMD DGAN+++LT S I+ PRFSP +V Y +++ R+ L+D D Sbjct: 181 NRLKRLAVMDYDGANVQFLTDS-SSIVLAPRFSPRGDQVLYTSFE-SGFPRINLLDV-AD 237 Query: 248 RAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A ++I M +PRFS +G++ + S+ DIY DL + RLT T I+ + Sbjct: 238 VARRQIATAPGEMSFSPRFSRDGRQVIYSLSNGATTDIYRTDLDTGQHVRLTATPSIDTA 297 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S SPD SQIVFESDR G +QLY+M S G D +RIS E Y PVWSP+GDL+AFTK Sbjct: 298 PSLSPDGSQIVFESDRSGSQQLYIMSSTGGDARRISF-GEGRYSTPVWSPRGDLVAFTKQ 356 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNG 425 + +F IGVM+ DGS+ERLL +APTWSP+GR ++F+R+ G D S LYS+D++G Sbjct: 357 NAGRFHIGVMRTDGSEERLLTSSFLDEAPTWSPNGRVIMFTRETQGADGASALYSVDISG 416 Query: 426 RNETLINTPAYASDPQW 442 RN + + ASD W Sbjct: 417 RNLRAVPIQSAASDASW 433 >gi|294678712|ref|YP_003579327.1| TolB protein [Rhodobacter capsulatus SB 1003] gi|294477532|gb|ADE86920.1| TolB protein [Rhodobacter capsulatus SB 1003] Length = 437 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 157/401 (39%), Positives = 240/401 (59%), Gaps = 10/401 (2%) Query: 47 PVSIAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWN 104 P+ A FV L +++ V++ DL + +F I + + Q+ + D+ + DW Sbjct: 37 PLPYALPTFVDEGAGSLASQITRVIADDLSGTGLFREIPEAAHIQRFGSFDTPVSYADWQ 96 Query: 105 SLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIY 163 ++ AQ L+ G V G ++ V+FRL DV Q+ G++ +SP SWR++AH ++D IY Sbjct: 97 AINAQALINGSVGMSGG-KVVVKFRLHDVYGNTQLGDGQQLAASPQSWRRLAHKVADVIY 155 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ITGE G F+SR+++VSE+ + L +MD DG N+ YLT S I+ PRFSP Sbjct: 156 ARITGESGYFDSRVVYVSETGPKDQRQKRLAIMDYDGENVNYLTDS-STIVLAPRFSPQG 214 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF-RSMILAPRFSSNGKRALISVQKDEAM 282 ++ Y T++ R+ +M + A K + +M +PRFS +G + S++++ Sbjct: 215 DRILYTTFE-TGFPRIKMMSVG-NAAGKLLPEVPGTMTFSPRFSPDGGSIVYSLEQNGNT 272 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + + ERLTN+ I + SYSPD SQIVFESDR G +Q+YVM ++G + RIS Sbjct: 273 DLYRMSVSGGSVERLTNSPAIETAPSYSPDGSQIVFESDRSGTQQIYVMSASGGEPVRIS 332 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + + Y PVWSP+GDLIAFTK SG +F IGVM+ DGS+ER L + PTW+P+GR Sbjct: 333 -NGDGRYGTPVWSPRGDLIAFTKQSGGRFFIGVMRTDGSEERDLTASYLDEGPTWAPNGR 391 Query: 403 SLIFSRKKDGDT-GSKLYSIDLNGRNETLINTPAYASDPQW 442 L+F+R+ G G+K++++D+ GRN + ASDP W Sbjct: 392 VLMFTRESPGAAGGAKMFTVDITGRNLKAVAGVGGASDPTW 432 >gi|254464281|ref|ZP_05077692.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales bacterium Y4I] gi|206685189|gb|EDZ45671.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales bacterium Y4I] Length = 441 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 154/378 (40%), Positives = 233/378 (61%), Gaps = 8/378 (2%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL + +F + + K+T D +F DW ++ AQ L+TG V G + L V Sbjct: 64 VIASDLSGTGLFREVPASAHISKVTAFDGPVKFADWKAVNAQALITGAVSVTG-NGLTVR 122 Query: 128 FRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FR +DV K++ +F + WR++AH ++D IY ITGE G F+SR+++VSES Sbjct: 123 FRGYDVFAEKELETALQFTGTTDGWRRMAHKVADAIYSEITGESGYFDSRVVYVSESGPK 182 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT-R 245 + L VMD DGAN++YLT S I+ PRFSP +V Y +Y+ +++++D + Sbjct: 183 NDRRKRLAVMDYDGANVQYLTNSA-SIVLAPRFSPAGDRVLYTSYE-SGFPQIHVLDVGQ 240 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + R G+ +M APRF+ +G+ + S + D++++D+++ A RLT+ I Sbjct: 241 VQRKVLSSGD-GTMSFAPRFAPDGRTIVYSQTQGGNTDLFAMDIETGAKTRLTSAPSIET 299 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + S+SPD SQIVFESDR G +QLYVM + G + +RIS E Y PVWSP+GD++AFTK Sbjct: 300 APSFSPDGSQIVFESDRSGSQQLYVMPAGGGEARRISFG-EGRYGTPVWSPRGDMVAFTK 358 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLN 424 + +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G +G + LYS+D+ Sbjct: 359 QNKGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRESQGSSGRALLYSVDIT 418 Query: 425 GRNETLINTPAYASDPQW 442 GRN + TP ASDP W Sbjct: 419 GRNLKPVKTPDGASDPSW 436 >gi|238650751|ref|YP_002916604.1| translocation protein TolB [Rickettsia peacockii str. Rustic] gi|259533880|sp|C4K1V5|TOLB_RICPU RecName: Full=Protein tolB; Flags: Precursor gi|238624849|gb|ACR47555.1| translocation protein TolB [Rickettsia peacockii str. Rustic] Length = 444 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 252/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVTKLESGKFQISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLVGEILEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRVLVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F++ +K+++ID Sbjct: 360 FNIGIMKACPQDDKNSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|329888411|ref|ZP_08267009.1| tol-Pal system beta propeller repeat protein TolB [Brevundimonas diminuta ATCC 11568] gi|328846967|gb|EGF96529.1| tol-Pal system beta propeller repeat protein TolB [Brevundimonas diminuta ATCC 11568] Length = 486 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/402 (39%), Positives = 238/402 (59%), Gaps = 8/402 (1%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+ IA F + G ++S V+S +L+RS F+ ++ SF + + P F W S+ Sbjct: 75 PLQIAVVPFTG--QNGSQISGVISGNLKRSGFFDPLNPASFVETGLTLANAPNFPQWTSI 132 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 GAQ ++ G V R+ V FRL+D + Q++ +F ++ WR+IAH ISD +YQ + Sbjct: 133 GAQAVLYGGVTPRADGRIDVGFRLYDPYRQCQLVSYQFTATSEQWRRIAHKISDVVYQRL 192 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP-NQQK 225 TGE G F+SR+LFVSES + L ++D+DG N +LT D+++ PRFS N + Sbjct: 193 TGEAGFFDSRVLFVSESGTQLNKLSRLTIVDQDGYNPVFLTQG-DEVIMSPRFSASNPDE 251 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 V Y +D R+YL + R + +G F +LAPRFS++G + S+ + D+Y Sbjct: 252 VTYVAL-GKDYSRIYLYNLSTGRR-ESLGEFDGQVLAPRFSNDGSKMAFSIIRGGNTDVY 309 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++L+S RLT I+ S S+SPD +QIVF SDR G +LY M+++GS Q+ IS+ Sbjct: 310 VMNLRSRQLSRLTTDPGIDTSPSFSPDGNQIVFTSDRSGSARLYTMRADGSGQRPISRGG 369 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 SY P WSP+GDL+AFTK G +F IGVMK DG+ ER+L + P+W+P+GR + Sbjct: 370 -GSYTAPAWSPRGDLVAFTKQQGGRFHIGVMKSDGTGERILSSSYFEEGPSWAPNGRYIA 428 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 F+R+ G ++L+++DL+GR + SDP W G +D Sbjct: 429 FARQSPGGD-TRLWTVDLSGRVVSQAGYDGRGSDPAWSGLLD 469 >gi|332188231|ref|ZP_08389959.1| tol-Pal system beta propeller repeat protein TolB [Sphingomonas sp. S17] gi|332011730|gb|EGI53807.1| tol-Pal system beta propeller repeat protein TolB [Sphingomonas sp. S17] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/396 (40%), Positives = 227/396 (57%), Gaps = 8/396 (2%) Query: 49 SIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLG 107 ++ T + D +G ++S++++ DL+ S +F I + ++ P+ + P F WN G Sbjct: 78 AVVQTAAGTTDVVGQQLSQIIANDLRNSGLFTPIPPAQLR-TVSFPEVTAPAFDYWNGTG 136 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 AQ LV G V G L V L+DV + ++ + F PA WR+ AH +D IY +T Sbjct: 137 AQALVQGYVRANGDGTLTVGCYLYDVLAKSELARQGFVVQPAEWRRAAHKCADSIYTKLT 196 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 GE F+SRI++VSE+ L +MD+DGAN R+LT + I+ PRF+PNQQ + Sbjct: 197 GEGPYFDSRIVYVSETGPKARRIKRLAIMDQDGANHRFLT-NGQSIVLTPRFAPNQQSIV 255 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +Y D+ +Y+ D R + N + APRFS +G+ L S+ + DIY V Sbjct: 256 YMSYVDKRPA-IYVYDIGSGRQRLVVQN-AATTFAPRFSPDGRWILFSMAQGGNTDIYRV 313 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 Q +RLTN+ I+ SYSPD S+IVFESDR G +Q+YVM ++GS+Q+RIS Sbjct: 314 SAQGGTPQRLTNSPGIDTGGSYSPDGSKIVFESDRSGGQQIYVMNADGSNQQRISFGG-G 372 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 Y PVWSP+GDLIAFTK G F IG+M G E+LL + P+WSP+GR + F Sbjct: 373 RYATPVWSPRGDLIAFTKLGG-AFRIGIMNPSGGAEKLLTNSWQDEGPSWSPNGRVITFQ 431 Query: 408 RKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 R G +G + ++ +DL G NE I TP SDP W Sbjct: 432 RTTQGSSGKADVWMVDLTGVNERRIPTPLDGSDPAW 467 >gi|34580657|ref|ZP_00142137.1| tolB protein precursor [Rickettsia sibirica 246] gi|28262042|gb|EAA25546.1| tolB protein precursor [Rickettsia sibirica 246] Length = 444 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + +V F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKVSFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEMLEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRVLVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFG-SGSYATPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F++ +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|157828282|ref|YP_001494524.1| translocation protein TolB [Rickettsia rickettsii str. 'Sheila Smith'] gi|166229989|sp|A8GRJ1|TOLB_RICRS RecName: Full=Protein tolB; Flags: Precursor gi|157800763|gb|ABV76016.1| translocation protein TolB precursor [Rickettsia rickettsii str. 'Sheila Smith'] Length = 444 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 163/445 (36%), Positives = 253/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFYADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFQISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLVGEILEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRVLVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGT 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK + + ER++ +++P WSP+GR ++F++ +K+++ID Sbjct: 360 FNIGIMKACPQDNKNSERIITSGYLVESPCWSPNGRVIMFAKGWPSSSKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|15892329|ref|NP_360043.1| translocation protein TolB [Rickettsia conorii str. Malish 7] gi|32699713|sp|Q92IL4|TOLB_RICCN RecName: Full=Protein tolB; Flags: Precursor gi|15619474|gb|AAL02944.1| tolB protein precursor [Rickettsia conorii str. Malish 7] Length = 444 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + +V F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKVSFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEMLEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRVLVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F++ +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|165932986|ref|YP_001649775.1| translocation protein TolB [Rickettsia rickettsii str. Iowa] gi|189035986|sp|B0BWZ3|TOLB_RICRO RecName: Full=Protein tolB; Flags: Precursor gi|165908073|gb|ABY72369.1| TolB [Rickettsia rickettsii str. Iowa] Length = 444 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 163/445 (36%), Positives = 253/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFYADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFQISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLVGEILEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRVLVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGT 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK + + ER++ +++P WSP+GR ++F++ +K+++ID Sbjct: 360 FNIGIMKACPQDNKNSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|67458884|ref|YP_246508.1| translocation protein TolB [Rickettsia felis URRWXCal2] gi|75536675|sp|Q4UM77|TOLB_RICFE RecName: Full=Protein tolB; Flags: Precursor gi|67004417|gb|AAY61343.1| TolB protein precursor [Rickettsia felis URRWXCal2] Length = 444 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 164/431 (38%), Positives = 247/431 (57%), Gaps = 20/431 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 +A + P IA KF + D +G V +V+S DL+ S +F IS SF Sbjct: 18 YALETINIEHGRADPTPIAVNKFNADSSADDVVGHDVVKVISNDLKLSGLFRPISSASFI 77 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 ++ T + P F W + A +LV G V K +L++ F LWD KQ+ G+ + Sbjct: 78 EEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKLKISFILWDTLLEKQLAGEILEAPE 137 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + +MD DGAN +YLT Sbjct: 138 NLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESTSLPKIKR-IALMDYDGANNKYLTN 196 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + +L PRF+ + K+ Y +Y + VY D + + +G+F + APRFS + Sbjct: 197 GKSLVL-TPRFARSADKIFYVSYATKRRALVYEKDLKTGKE-SVVGDFSGISFAPRFSPD 254 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD +IV+ SDR G QL Sbjct: 255 GRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQL 314 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKK----DG 380 Y+M S+GSD +RIS SY P WSP+GD IAFTK + G+ F IG+MK D Sbjct: 315 YIMNSDGSDVQRISFGG-GSYTAPSWSPRGDYIAFTKITRGAEGKTFNIGIMKACPQDDE 373 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDLNGRNETLINTPAY 436 + ER++ +++P WSP+GR ++F++ + +K+++IDL G NE I TPA Sbjct: 374 NSERIITSGYLVESPCWSPNGRVIMFAKGWPSRAKAPGKNKIFAIDLTGHNEREIITPAD 433 Query: 437 ASDPQWVGFMD 447 ASDP+W G ++ Sbjct: 434 ASDPEWSGVLN 444 >gi|157825542|ref|YP_001493262.1| translocation protein TolB [Rickettsia akari str. Hartford] gi|166229986|sp|A8GMX9|TOLB_RICAH RecName: Full=Protein tolB; Flags: Precursor gi|157799500|gb|ABV74754.1| translocation protein TolB precursor [Rickettsia akari str. Hartford] Length = 444 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 255/451 (56%), Gaps = 28/451 (6%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE-----LGGKVSEVVS 70 N+ ++L+ F +A + +P IA KF +ID LG V +V+S Sbjct: 3 NIIYFILLL--LFSFKGYALETINIEHGQAAPTPIAVNKF-NIDSSADYVLGNDVVKVIS 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S VF IS SF ++ T + P F W + A +LV G + K +L++ F L Sbjct: 60 NDLKLSGVFCPISSASFIEERTGIEYKPLFAAWRQINASLLVNGEIKKLESGKLKISFIL 119 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 WD KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK Sbjct: 120 WDTLLEKQLAGEILEVPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESTSLPKIK 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + +MD DGAN +YLT R +L PRF+ + K+ Y +Y + VY D + + Sbjct: 180 R-IALMDYDGANNKYLTNGRSLVL-TPRFARSADKIFYVSYATKRRALVYEKDLKTGKE- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +G+F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYS Sbjct: 237 SVVGDFSGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYS 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---- 366 PD +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK Sbjct: 297 PDGKKIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYTAPSWSPRGDYIAFTKIIRGA 355 Query: 367 SGEKFAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR------KKDGDTGS 416 G+ F IG+MK D ++ER++ +++P WSP+GR ++F++ K G + Sbjct: 356 EGKTFNIGIMKAYPQDDENRERIITSGYLVESPCWSPNGRVIMFAKGWPSGAKAPGK--N 413 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 K+++IDL G NE I TP ASDP+W G ++ Sbjct: 414 KIFAIDLTGHNEREIITPEDASDPEWSGVLN 444 >gi|229586559|ref|YP_002845060.1| translocation protein TolB [Rickettsia africae ESF-5] gi|259533877|sp|C3PN07|TOLB_RICAE RecName: Full=Protein tolB; Flags: Precursor gi|228021609|gb|ACP53317.1| TolB protein precursor [Rickettsia africae ESF-5] Length = 444 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + +V F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKVSFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEMLEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRVLVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK D + E+++ +++P WSP+GR ++F++ +K+++ID Sbjct: 360 FNIGIMKACPQDDENSEKIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|114570966|ref|YP_757646.1| TolB domain-containing protein [Maricaulis maris MCS10] gi|114341428|gb|ABI66708.1| TolB, N-terminal domain protein [Maricaulis maris MCS10] Length = 453 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 164/443 (37%), Positives = 247/443 (55%), Gaps = 19/443 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI-DEL---GGKVSEVVSKD 72 LL LIG + ++V N P+ IA FV DE G ++ VV+ D Sbjct: 8 FAALLALIGWSAASDAQEPLRVDVTQGNLDPMPIAVPDFVGASDEALRRGADITRVVAND 67 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L S +F + QD+F + I N D PRF DW + A L+ G V + RL V FRLWD Sbjct: 68 LASSGLFAPVDQDAFIEDIANIDLRPRFSDWRVINADALLVGSVTIQEDGRLVVGFRLWD 127 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKN 191 + +Q++G ++ ++P +WR++AH ++D +Y+ +TGE G FN+RI++VSE + G Sbjct: 128 TRLEEQLLGLQYRTAPENWRRVAHRLADAVYERLTGETGYFNTRIVYVSEGRGIEGEPIR 187 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLMDTRIDRAP 250 L +MD+DGAN +LT R + P +SP+ Q++ Y ++ D + +Y ++T A Sbjct: 188 QLALMDQDGANPSFLT-DRSYMALLPNYSPSAQEITYVSFLDGQATTYLYNLETGRQEAL 246 Query: 251 KRIGNFRS--------MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 G + L+ RFS +G +S++ DI+ DLQ+ +RLT Sbjct: 247 FASGGAGAASQVDPDGQSLSARFSPDGSELAVSIETRSGHDIHLFDLQTRNLQRLTQHPA 306 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++ S++PD +IVF S R G QLYVM +GSD +RI+ Y PVWSP+GDLIA Sbjct: 307 DDVEPSFAPDGERIVFSSARGGGSQLYVMNRDGSDVQRITF-GSGRYTTPVWSPRGDLIA 365 Query: 363 FTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK--LY 419 FTK G +F++GV++ DGS ER+L E + P WSP+GR L+F+R + G++ ++ Sbjct: 366 FTKQVGGQFSLGVVRADGSGIERILFEGYFVDTPAWSPNGRVLLFTRGEQRANGTRYEIW 425 Query: 420 SIDLNGRNETLINTPAYASDPQW 442 S+DL G N + T ASDP W Sbjct: 426 SVDLAGFNLRRLATGGMASDPAW 448 >gi|51473498|ref|YP_067255.1| translocation protein TolB [Rickettsia typhi str. Wilmington] gi|67461946|sp|Q68X69|TOLB_RICTY RecName: Full=Protein tolB; Flags: Precursor gi|51459810|gb|AAU03773.1| TolB protein precursor [Rickettsia typhi str. Wilmington] Length = 443 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 167/439 (38%), Positives = 248/439 (56%), Gaps = 20/439 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQR 75 ++ I F + +A + P IA KF + D +G V +V+S DL+ Sbjct: 4 IVYFILTLFSLTGYALETINIEHGRVDPTPIAVNKFNADSSNNDLVGNAVVKVISNDLKI 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F IS SF ++ T + P F W + A +LV G V +L++ F LWD Sbjct: 64 SGLFRPISSASFIEEQTGINYKPLFAAWRQINASLLVNGEVQTLESGKLKISFILWDTFL 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 KQ+IG F WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + + Sbjct: 124 EKQLIGALFEVPTKLWRRAAHKIADKIYEKITGDPGYFDTKIVYVSESTALPKIKR-IAL 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DGAN +YLT + +L PRF+ + K+ Y +Y + VY D + + +G+ Sbjct: 183 MDYDGANNKYLTNGKSLVL-TPRFAHSADKIFYVSYATKSRALVYEKDLKTGKE-SVVGD 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + APRFS +GK+A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 FVGISFAPRFSPDGKKAVMSIAKNGSTHIYEIDLATKQLNKLTDGFGINTSPSYSPDGKK 300 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEK-F 371 IV+ SD+ G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + GEK F Sbjct: 301 IVYNSDKNGVPQLYIMNSDGSDVRRISFGG-GSYASPSWSPRGDYIAFTKITRHDGEKIF 359 Query: 372 AIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDL 423 IG+MK + ER++ +++P WSP+GR ++FS+ + +K+++IDL Sbjct: 360 NIGIMKAYPQDHENSERIITSGYLVESPCWSPNGRVIMFSKGWPSRAKAPGKNKIFTIDL 419 Query: 424 NGRNETLINTPAYASDPQW 442 G NE + TPA ASDP+W Sbjct: 420 TGHNEREVITPAGASDPEW 438 >gi|296117355|ref|ZP_06835945.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769] gi|295976121|gb|EFG82909.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769] Length = 457 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/438 (38%), Positives = 239/438 (54%), Gaps = 34/438 (7%) Query: 23 LIGGFFPTSIHAFVKVA------------TNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + GG T + A V VA + A +P+ I + +G ++++V+S Sbjct: 31 IAGGLLATPLFAPVGVAHAQSAAPDAEITVDQARTAPIPIVIPSLG--NGIGQQITDVIS 88 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL +F IS + P P F + ++GA+ +V+GR G +RVEFRL Sbjct: 89 ADLGNCGLFRPISA-------SMPTGRPDFATYKTMGARAMVSGRAENTGSS-IRVEFRL 140 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 WDV QI G + +S WR+IAH ISD IY + GEKG FNSRI +V+ S Sbjct: 141 WDVTTGSQIQGTAYTASSQDWRRIAHVISDVIYTRLLGEKGYFNSRIAYVAMSGPRSHQT 200 Query: 191 NSLCVMDRDGANIRYLTPSR-DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L +MD+DGA+ RYLT + D I PRF+P ++A+ +Y + RVYL + + Sbjct: 201 RRLAIMDQDGADSRYLTSGQWDTI--TPRFNPANSELAFMSYINNR-PRVYLFNLNTGQQ 257 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + +G F M APRFS G ++SV + D+YSVDL S + ++T + I+ S Y Sbjct: 258 -RMLGEFSGMSFAPRFSPRGDAVVLSVTRGSGSDLYSVDLSSMSRHQITASGAIDTSPCY 316 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD SQIVF SDR G QLYVM + G D KRIS Y PVWSP+GDLIAF++ + Sbjct: 317 SPDGSQIVFNSDRGGSPQLYVMPATGGDAKRISY-GHGHYGSPVWSPRGDLIAFSRIANG 375 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-----SKLYSIDLN 424 F++GVM DG+ ER+L + +++PT+ P+GR L F R+ G S + SID+ Sbjct: 376 SFSLGVMAPDGTGERILTQGFTVESPTFCPNGRVLAFCRQTAAHAGGAGFSSGISSIDIT 435 Query: 425 GRNETLINTPAYASDPQW 442 G +E + +SDP W Sbjct: 436 GFHERPLPV-GSSSDPTW 452 >gi|56416532|ref|YP_153606.1| translocation protein TolB [Anaplasma marginale str. St. Maries] gi|254994752|ref|ZP_05276942.1| translocation protein TolB [Anaplasma marginale str. Mississippi] gi|255004004|ref|ZP_05278805.1| translocation protein TolB [Anaplasma marginale str. Virginia] gi|67461908|sp|Q5PBH8|TOLB_ANAMM RecName: Full=Protein tolB; Flags: Precursor gi|56387764|gb|AAV86351.1| TolB protein precursor [Anaplasma marginale str. St. Maries] Length = 441 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 228/387 (58%), Gaps = 10/387 (2%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 E+G V+ +DL + +F+ + T + +P W S+ VLVTG + + Sbjct: 55 EIGKSCIRVMLRDLNSTGIFDASWKLPAGGFSTTSEGMPDSNAWTSVAKDVLVTGSIKEF 114 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + R++V+ +WDV +Q+ GK F + +WR+ AH++SD IY ITGE G FN+RI + Sbjct: 115 AQGRVKVKLFIWDVASGRQLSGKSFNFATGNWRRAAHSMSDSIYSRITGEGGYFNTRIAY 174 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V+E+ + G + +MD+DGAN Y+T R + + PRFSP+ + + Y +Y V Sbjct: 175 VAETGLPG--SRRIAIMDQDGANNIYIT-GRGEFVSTPRFSPDARNLVYMSYAKSG-GSV 230 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 L D + +G R + +PRFS +G+ L+S + +IYS+DL+S + RLTN Sbjct: 231 VLHDLETGYS-TALGGVRGVNSSPRFSPDGRHVLLSESAQGSTNIYSIDLKSGKSTRLTN 289 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 IN SASYSPD IVF SDR G+ QLYVM ++G++Q+RIS K Y P WSP+GD Sbjct: 290 DRSINTSASYSPDKKSIVFNSDRSGRPQLYVMNADGTNQRRISSGK-GGYSAPAWSPRGD 348 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG---- 415 IAFTK G+ F +GVMK DGS ERLL + + +P+WSP+GR ++F+++ Sbjct: 349 WIAFTKTEGKSFHVGVMKPDGSGERLLAKGYMVDSPSWSPNGRVILFTQQDPPSATHPFR 408 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQW 442 S+L ++D+ G N +++ P AS+ W Sbjct: 409 SRLVTVDITGTNTQILDVPTNASNAHW 435 >gi|222474900|ref|YP_002563315.1| TOLB protein precursor (tolB) [Anaplasma marginale str. Florida] gi|255002872|ref|ZP_05277836.1| translocation protein TolB [Anaplasma marginale str. Puerto Rico] gi|222419036|gb|ACM49059.1| TOLB protein precursor (tolB) [Anaplasma marginale str. Florida] Length = 441 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 228/387 (58%), Gaps = 10/387 (2%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 E+G V+ +DL + +F+ + T + +P W S+ VLVTG + + Sbjct: 55 EIGKSCIRVMLRDLNSTGIFDASWKLPAGGFGTTSEGMPDSNAWTSVAKDVLVTGSIKEF 114 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + R++V+ +WDV +Q+ GK F + +WR+ AH++SD IY ITGE G FN+RI + Sbjct: 115 AQGRVKVKLFIWDVASGRQLSGKSFNFATGNWRRAAHSMSDSIYSRITGEGGYFNTRIAY 174 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V+E+ + G + +MD+DGAN Y+T R + + PRFSP+ + + Y +Y V Sbjct: 175 VAETGLPG--SRRIAIMDQDGANNIYIT-GRGEFVSTPRFSPDARNLVYMSYAKSG-GSV 230 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 L D + +G R + +PRFS +G+ L+S + +IYS+DL+S + RLTN Sbjct: 231 VLHDLETGYS-TALGGVRGVNSSPRFSPDGRHVLLSESAQGSTNIYSIDLKSGKSTRLTN 289 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 IN SASYSPD IVF SDR G+ QLYVM ++G++Q+RIS K Y P WSP+GD Sbjct: 290 DRSINTSASYSPDKKSIVFNSDRSGRPQLYVMNADGTNQRRISSGK-GGYSAPAWSPRGD 348 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG---- 415 IAFTK G+ F +GVMK DGS ERLL + + +P+WSP+GR ++F+++ Sbjct: 349 WIAFTKTEGKSFHVGVMKPDGSGERLLAKGYMVDSPSWSPNGRVILFTQQDPPSATHPFR 408 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQW 442 S+L ++D+ G N +++ P AS+ W Sbjct: 409 SRLVTVDITGTNTQILDVPTNASNAHW 435 >gi|157964377|ref|YP_001499201.1| translocation protein TolB [Rickettsia massiliae MTU5] gi|166988078|sp|A8F168|TOLB_RICM5 RecName: Full=Protein tolB; Flags: Precursor gi|157844153|gb|ABV84654.1| TolB protein precursor [Rickettsia massiliae MTU5] Length = 444 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 163/445 (36%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSFASYALETINIEHGRADPTPIAVNKFNADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEILEVPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESNSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRALVYEKDLKTGKE-SVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ ++ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAQNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITRGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F++ + +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFTKGWPSRAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|148555048|ref|YP_001262630.1| translocation protein TolB [Sphingomonas wittichii RW1] gi|166229992|sp|A5V876|TOLB_SPHWW RecName: Full=Protein tolB; Flags: Precursor gi|148500238|gb|ABQ68492.1| Tol-Pal system beta propeller repeat, TolB [Sphingomonas wittichii RW1] Length = 439 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 158/396 (39%), Positives = 229/396 (57%), Gaps = 9/396 (2%) Query: 49 SIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLG 107 ++A T LG +V++VV+ DL+ S +F+ + + + Q +T+P + P + W G Sbjct: 46 AVANTPAGDTAALGQRVADVVTNDLKNSGLFSPLPKSAL-QTVTHPQVTAPDYMFWTQSG 104 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 AQ L+ G V G L V L+DV R ++ + F PA WR+ AH +D +Y +T Sbjct: 105 AQALIQGFVQANGDGSLTVGCYLYDVLARTELTRQGFVVQPAQWRRAAHKCADLVYTRLT 164 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 GE F+SR+++VSE+ L +MD+DGAN R+LT + I+ PRF+PNQQ + Sbjct: 165 GEGPYFDSRVVYVSETGPKTNRIKRLAIMDQDGANHRFLT-NGQTIVLTPRFAPNQQTIT 223 Query: 228 YATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y +Y + + RVY+ D I +R + + +M APRFS +G+ + S+ DIY Sbjct: 224 YMSYTN-NRARVYVYD--IGSGSQRLVVDQPNMTFAPRFSPDGRTIVFSMAVGGNTDIYR 280 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 V +RLT + I+ ASYSPD S+IVFESDR G +QLYVM ++GS+Q RIS Sbjct: 281 VSAGGGTPQRLTTSPGIDTGASYSPDGSKIVFESDRSGTQQLYVMNADGSNQNRISF-GS 339 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 Y WSP+GDLIAFTK G F +G+M DGS E++L + P+WSP+GR ++F Sbjct: 340 GRYGSAAWSPRGDLIAFTKIGG-GFNVGIMNIDGSGEKILTNGWQDEGPSWSPNGRVIMF 398 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 R G + L+S+DL G NE + TP SDP W Sbjct: 399 FRTAQGSGKADLWSVDLTGVNERPVPTPLDGSDPAW 434 >gi|239947882|ref|ZP_04699635.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia endosymbiont of Ixodes scapularis] gi|239922158|gb|EER22182.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia endosymbiont of Ixodes scapularis] Length = 444 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 250/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDEL-GGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF S D + G V +V+S DL+ Sbjct: 4 IIYFILSLLFSFTGYALETINIEHGRADPTPIAVNKFNADSSTDNVVGHDVVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K +L++ F LWD Sbjct: 64 LSGLFRPISSASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKLKISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEILEVPETLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR-IA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + +L PRF+ + K+ Y +Y + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKSLVL-TPRFARSADKIFYVSYATKRRALVYEKDLKTGKE-NVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFSGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYTAPSWSPRGDYIAFTKITRGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F++ + +K++ ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSRAKAPGKNKIFVID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TP ASDP+W G ++ Sbjct: 420 LTGHNEREIITPTDASDPEWSGVLN 444 >gi|91205083|ref|YP_537438.1| translocation protein TolB [Rickettsia bellii RML369-C] gi|157827580|ref|YP_001496644.1| translocation protein TolB [Rickettsia bellii OSU 85-389] gi|119371058|sp|Q1RJW5|TOLB_RICBR RecName: Full=Protein tolB; Flags: Precursor gi|166229987|sp|A8GXK7|TOLB_RICB8 RecName: Full=Protein tolB; Flags: Precursor gi|91068627|gb|ABE04349.1| TolB protein precursor [Rickettsia bellii RML369-C] gi|157802884|gb|ABV79607.1| translocation protein TolB precursor [Rickettsia bellii OSU 85-389] Length = 444 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 164/446 (36%), Positives = 248/446 (55%), Gaps = 24/446 (5%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDL 73 C+LL+ F + +A + P IA F S + +G ++ +V+S DL Sbjct: 7 CILLL-----FSFNSYALETINIEHGKADPTPIAVNNFEADSASDNTVGHEIVKVISNDL 61 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + +F+ IS SF ++ T P F W + A +LV G V K +L++ F LWD Sbjct: 62 KLCGLFHPISSASFIEEKTGIGYKPLFAAWRQINASLLVNGAVKKLENGKLKISFILWDT 121 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+S+I++V+ES + Sbjct: 122 LLEKQLGGEVLELPENLWRRAAHKIADKIYEKITGDTGYFDSKIIYVAESGPDLKKVKRI 181 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD DGAN RY+T + +L PRFS + K+ Y +Y + VY D + + + Sbjct: 182 ALMDYDGANNRYITDGKSLVL-TPRFSGSADKIFYVSYATKRRTLVYEKDLKTGKE-SIV 239 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 G+F + APRF+ +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 240 GDFAGISFAPRFAPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDG 299 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGE 369 +IVF SDR G QLY+M S+GS+ +RIS SY P WSP+GD IAFTK G+ Sbjct: 300 RRIVFNSDRNGVPQLYIMNSDGSNVQRISFGG-GSYMAPSWSPRGDYIAFTKIIRGSEGK 358 Query: 370 KFAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGDTGSK--LYSI 421 F IGVMK D + ER++ +++P WSP+GR ++F++ +G + K +Y+I Sbjct: 359 TFNIGVMKPYPQDDENSERVIASGYLVESPCWSPNGRVIMFAKGWPSNGKSSGKNRIYAI 418 Query: 422 DLNGRNETLINTPAYASDPQWVGFMD 447 DL G NE I TP ASDP+W ++ Sbjct: 419 DLTGHNEREIKTPGDASDPEWSNLLN 444 >gi|56551061|ref|YP_161900.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis ZM4] gi|241761363|ref|ZP_04759451.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753278|ref|YP_003226171.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|67461903|sp|Q5NR65|TOLB_ZYMMO RecName: Full=Protein tolB; Flags: Precursor gi|56542635|gb|AAV88789.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis ZM4] gi|241374270|gb|EER63767.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552641|gb|ACV75587.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 458 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 157/384 (40%), Positives = 222/384 (57%), Gaps = 9/384 (2%) Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQVLVTGRVIKE 119 LG +V+ V+S DL+ S +F Q S ++ P+ + P++ W S GAQ LV G V Sbjct: 77 LGRQVASVISNDLKSSGLFTPSQQASL-HNVSFPEVTAPQYSYWLSSGAQALVQGFVQAN 135 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G L V L+DV ++++ K F PA WR+ AH +D +Y +TGE F+SRI++ Sbjct: 136 GDGTLTVGCYLYDVFASQEMLHKGFVVKPADWRRAAHKCADAVYTRLTGEGPYFDSRIVY 195 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR 238 +SE+ L +MD+DGAN R+LT + +L PRF+PNQQ V Y +Y + + Sbjct: 196 ISETGPKNHRLKRLAIMDQDGANHRFLTNGQSMVL-TPRFAPNQQTVTYLSYVGNSPRIY 254 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 VY + + R + N + APRFS +GK + S+ DIY V + RLT Sbjct: 255 VYTLGSGHVRL---VVNKPNTTFAPRFSPDGKTIVFSMSVAGNTDIYKVPVSGGQATRLT 311 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + I+ + S+SPD S+IVFESDR G +Q+Y+M ++GS+Q RIS Y PVWSP+G Sbjct: 312 TSPGIDTAPSFSPDGSKIVFESDRSGSQQIYIMNADGSNQNRISFG-SGRYATPVWSPRG 370 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 DLIAFTK G F +GVMK DGS E++L + P+WSP+GR + F R ++L Sbjct: 371 DLIAFTKLGG-GFHVGVMKTDGSGEQILTNGWQDEGPSWSPNGRVIAFFRTARNSGHTEL 429 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 +S+DL G NE I TP SDP W Sbjct: 430 WSVDLTGVNERHIPTPLDGSDPSW 453 >gi|329113830|ref|ZP_08242601.1| Protein TolB [Acetobacter pomorum DM001] gi|326696840|gb|EGE48510.1| Protein TolB [Acetobacter pomorum DM001] Length = 454 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 239/411 (58%), Gaps = 19/411 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 ++ + A +P+ I F LG K++EV++ DL + +F ++ + Sbjct: 53 EITVDQARTAPIPIIIPNFGG--GLGEKIAEVLTNDLNNTGLFKVMPGSTTS-------G 103 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P F S+GA VTG V +RVE RLWDV +QI G + +S A+WR+IAH Sbjct: 104 TPDFATSKSMGAHAQVTGSVSGG-GSSVRVEMRLWDVLSHQQIQGTAYTTSAANWRRIAH 162 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 + D IYQ + GEKG F++RI F+S S G + L VMD+DGAN R LT + + Sbjct: 163 IVGDVIYQRMLGEKGYFDTRIAFISRSGPRGHQRTRLAVMDQDGANARMLTTGK-WLTLT 221 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSP + ++A+ +Y + RVYL D R + +G F + APRFS +G+ ++SV Sbjct: 222 PRFSPVKDQIAFMSYANNR-PRVYLFDLTSGRQ-QILGEFEGISFAPRFSPDGRSVVLSV 279 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 ++ D+Y VDL S + ++T++ I+ S +SPD SQIVF SDR G Q+Y+M ++G Sbjct: 280 TRNGGSDLYVVDLASGSRRQITSSGAIDTSPCFSPDGSQIVFNSDRGGSPQIYIMPASGG 339 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +RIS + +Y PVWSP+GDLIAFT+ +G F++GVM DG+ ER++ + +++P+ Sbjct: 340 GARRISYG-QGTYGSPVWSPRGDLIAFTRIAGGMFSLGVMAPDGTGERIMTQGFTVESPS 398 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYS-----IDLNGRNETLINTPAYASDPQW 442 + P+GR L + R+ G +S +D+ G N+ ++ TP ASDP W Sbjct: 399 FCPNGRVLAYCRQSRAGAGGAGFSSTIGMVDITGFNDRVLPTPEAASDPAW 449 >gi|302381977|ref|YP_003817800.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas subvibrioides ATCC 15264] gi|302192605|gb|ADL00177.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas subvibrioides ATCC 15264] Length = 466 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 155/412 (37%), Positives = 233/412 (56%), Gaps = 7/412 (1%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 ++V + P IA F + G ++EV+S DL+RS F I+ SF + Sbjct: 46 IEVEIDQGVLRPFQIAVAPFSGQN--GASLTEVLSGDLRRSGFFEPINPGSFIETGLTLA 103 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + P F W +GAQ ++ G V R FRL+D + Q++ F ++P WR+IA Sbjct: 104 NAPNFPQWTQIGAQAVLYGSVTPRPDGRNDFGFRLYDPYRQCQLVSYNFTATPEQWRRIA 163 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D +Y +TGE G F++RI++V+ES + L ++D+DG N +LT +I+ Sbjct: 164 HKIADVVYARMTGESGVFDTRIIYVAESGTELNRLSRLAIVDQDGYNPVFLT-DGSEIIL 222 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PRFS N ++ Y ED R+YL + + R + +G F LAPR+S +G + S Sbjct: 223 TPRFSSNPNEITYMAL-GEDYSRIYLYNLQTGRR-ESLGEFDGQALAPRYSPDGTKVAFS 280 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + + D+Y ++L++ RLT+ I+ S S+SPD+S+IVF SDR G +LYVM ++G Sbjct: 281 IIRGGNTDVYVMNLRTRQLSRLTSDPGIDTSPSFSPDASRIVFNSDRTGTPRLYVMNADG 340 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 S+Q+ IS+ SY P WSP+GDLIAFTK G +F IGVM DGS ER+L + P Sbjct: 341 SNQRPISRGG-GSYTAPAWSPRGDLIAFTKSGGGQFGIGVMATDGSGERMLSRSYFEEGP 399 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 +W+P+GR L+FSR+ G + L+ +DL+GR SDP W +D Sbjct: 400 SWAPNGRYLMFSRQTRGGN-TNLWMVDLSGRVIAQSGYQGRGSDPAWSPLLD 450 >gi|126733593|ref|ZP_01749340.1| translocation protein TolB precursor [Roseobacter sp. CCS2] gi|126716459|gb|EBA13323.1| translocation protein TolB precursor [Roseobacter sp. CCS2] Length = 438 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 157/408 (38%), Positives = 237/408 (58%), Gaps = 22/408 (5%) Query: 47 PVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P++ A F + + +S +V +DL + +F + +F ++++ F D Sbjct: 36 PITFAVPSFEAESPAAQQAASDISRLVVQDLAGTGLFREVPATAFISQVSSFVQPVAFPD 95 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDD 161 W ++ AQ L+ G V G ++L V+FRL+DV +++ G +F + WR++ H +SD Sbjct: 96 WRAINAQALIVGAVNVNG-NQLSVKFRLYDVFSGQELGQGLQFAGTVDGWRRMGHKVSDA 154 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +Y ITGE G F+SR++FVSES + L +MD DGAN+++LT S I+ PRFSP Sbjct: 155 VYSRITGEGGYFDSRVVFVSESGPKDNRQKRLAIMDFDGANVQFLTDS-SSIVLAPRFSP 213 Query: 222 NQQKVAYATYDDEDILRVYLMDT------RIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 N +V Y +++ R+ +++ ++ AP M +PRFS +G++ + S Sbjct: 214 NGDRVLYTSFE-SGFPRINVLNVANVGRQQLQTAPGE------MAFSPRFSRDGRQVIYS 266 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + DIY DL + RLT+ I + S SPD SQIVFESDR G +QLYVM +NG Sbjct: 267 LSNGGNTDIYRTDLSTGQHVRLTSAPSIETAPSLSPDGSQIVFESDRSGNQQLYVMSANG 326 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + +RIS + Y PVWSP+GDL+AFTK + +F IGVM+ DGS+ERLL + P Sbjct: 327 GEARRIS-FGQGRYGTPVWSPRGDLVAFTKQNAGRFHIGVMRIDGSEERLLTSSFLDEGP 385 Query: 396 TWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 TWSP+GR ++FSR+ G G S +YS+D++GRN + ASDP W Sbjct: 386 TWSPNGRVIMFSRETQGAGGTSSMYSVDISGRNLKAVPLQGGASDPSW 433 >gi|189184452|ref|YP_001938237.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda] gi|226705887|sp|B3CUF6|TOLB_ORITI RecName: Full=Protein tolB; Flags: Precursor gi|189181223|dbj|BAG41003.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda] Length = 453 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 151/424 (35%), Positives = 235/424 (55%), Gaps = 13/424 (3%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--GKVSEVVSKDLQRSDVFNLISQ 84 F T+ + +K+ + P++I F S +E G + ++S DL S +F IS Sbjct: 30 FANTTTLSPIKITKGNCTQIPIAINFFAAKSNEEHGLSQNIVSIISNDLNISKIFAPISS 89 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 D F + IP F W+ + A +L+ G + K +V F +WDV K+I K F Sbjct: 90 DLFIETEQGVAHIPLFTAWSQINANILINGEITKIDSTDFKVTFVVWDVFSAKEITRKSF 149 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 WR AH I+D IY+ +TG KG+FN++I++VSES S + +MD+DGAN Sbjct: 150 TFPSQLWRSTAHKIADQIYKHVTGSKGNFNTKIVYVSESNSSKGKIRRIAIMDQDGANHN 209 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAP 263 Y+T ++ ++ P FSPN ++ Y +Y ++ +R++ +++ + K + +F + +P Sbjct: 210 YITNGKNHVI-TPVFSPNNNQILYVSYHNKIPTVRIHDLNSGNN---KILASFNGITFSP 265 Query: 264 RFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RFS +G + L+S IY ++L + ++LT IN S SYSPD S+I F SDR Sbjct: 266 RFSPDGNKILVSNSSTKNVTHIYEINLLTGKIKQLTKGQSINTSPSYSPDGSKIAFVSDR 325 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G Q+Y+M G + KR++ + +Y P WSP + IAFTK +F+IGV+K DGS Sbjct: 326 SGSTQIYIMNDQGGNIKRLT-SQPGAYTTPAWSPTNNYIAFTKIEAGEFSIGVIKLDGSN 384 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 +R++ ++ P+W+P G+++IFSR K T KLYS+D G NE I TP AS Sbjct: 385 KRIIATKHLVEGPSWAPDGKTIIFSRAYKATKSTSTKVKLYSVDCTGYNEREIQTPENAS 444 Query: 439 DPQW 442 DP W Sbjct: 445 DPNW 448 >gi|330991878|ref|ZP_08315827.1| Protein tolB [Gluconacetobacter sp. SXCC-1] gi|329760899|gb|EGG77394.1| Protein tolB [Gluconacetobacter sp. SXCC-1] Length = 456 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 235/410 (57%), Gaps = 20/410 (4%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI 97 + + A +P+ I S + +V++V+S DL +F IS + P Sbjct: 57 ITVDQARTAPIPIVLPSLGS--GVAQQVTDVISADLGNCGLFRPISA-------SMPQGT 107 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHT 157 P F + S+GA+ VTG+V+++G LRVEFRLWDV KQI G + ++ WR+IAH Sbjct: 108 PDFASYKSMGARAAVTGKVVEQGSS-LRVEFRLWDVLVGKQIQGTAYTAAAQDWRRIAHV 166 Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 I+D IY + GE+G FN+RI +++ S L +MD+DGA+ RYLT + + P Sbjct: 167 IADVIYNRMLGEQGYFNTRIAYIARSGPRAHQTTRLAIMDQDGADSRYLT-NGQWLTLTP 225 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 RF+P ++A+ +Y + RVYL + + + +G+F + APRF+ +G+ ++SV Sbjct: 226 RFNPANSELAFMSYANYRP-RVYLFNLNTGQQ-RLLGDFSGISFAPRFAPDGRSVILSVT 283 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + DIY VDL + + +LT + I+ S S+SPD SQIVF SDR G QLY+M ++G D Sbjct: 284 RGGGSDIYLVDLANMSRRQLTASGAIDTSPSFSPDGSQIVFNSDRGGSPQLYIMSASGGD 343 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 KRIS Y PVWSP+GDLIAF++ + F++GVM DG+ ER+L + +++P + Sbjct: 344 AKRISYG-HGQYGSPVWSPRGDLIAFSRIANGSFSLGVMAPDGTGERILTQGFTVESPAF 402 Query: 398 SPSGRSLIFSRK-----KDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 P+GR L F R+ + + +ID+ G +E + ASDP W Sbjct: 403 CPNGRVLAFCRQSAAGSGGAGFATGISTIDITGFHERALPA-GSASDPTW 451 >gi|258543663|ref|YP_003189096.1| translocation protein TolB [Acetobacter pasteurianus IFO 3283-01] gi|256634741|dbj|BAI00717.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-01] gi|256637797|dbj|BAI03766.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-03] gi|256640851|dbj|BAI06813.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-07] gi|256643906|dbj|BAI09861.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-22] gi|256646961|dbj|BAI12909.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-26] gi|256650014|dbj|BAI15955.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-32] gi|256653004|dbj|BAI18938.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656058|dbj|BAI21985.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-12] Length = 454 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 155/411 (37%), Positives = 239/411 (58%), Gaps = 19/411 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 ++ + A +P+ I F LG K++EV++ DL + +F ++ + Sbjct: 53 EITVDQARTAPIPIIIPNFGG--GLGEKIAEVLTNDLNNTGLFKVMPGSTTS-------G 103 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P F S+GA VTG V +RVE RLWDV +QI G + +S A+WR+IAH Sbjct: 104 TPDFVTSKSMGAHAQVTGSVSGG-GSSVRVEMRLWDVLSHQQIQGTAYTTSAANWRRIAH 162 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 + D IY+ + GEKG F++RI F+S S G + L VMD+DGAN R LT + + Sbjct: 163 IVGDVIYERMLGEKGYFDTRIAFISRSGPRGHQRTRLAVMDQDGANARMLTTGK-WLTLT 221 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSP + ++A+ +Y + RVYL D R + +G F + APRFS +G+ ++SV Sbjct: 222 PRFSPVKDQIAFMSYANNR-PRVYLFDLTSGRQ-QILGEFEGISFAPRFSPDGRSVVLSV 279 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 ++ D+Y VDL S + ++T++ I+ S +SPD SQIVF SDR G Q+Y+M ++G Sbjct: 280 TRNGGSDLYIVDLASGSRRQITSSGAIDTSPCFSPDGSQIVFNSDRGGSPQIYIMPASGG 339 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +RIS + +Y PVWSP+GDLIAFT+ +G F++GVM DG+ ER++ + +++P+ Sbjct: 340 GARRISYG-QGTYGSPVWSPRGDLIAFTRIAGGMFSLGVMAPDGTGERIMTQGFTVESPS 398 Query: 397 WSPSGRSLIFSRKKDGDTG-----SKLYSIDLNGRNETLINTPAYASDPQW 442 + P+GR L + R+ G S + +D+ G N+ ++ TP ASDP W Sbjct: 399 FCPNGRVLAYCRQSRAGAGGAGFNSTIGMVDITGFNDRVLPTPEAASDPAW 449 >gi|254294750|ref|YP_003060773.1| Tol-Pal system beta propeller repeat protein TolB [Hirschia baltica ATCC 49814] gi|254043281|gb|ACT60076.1| Tol-Pal system beta propeller repeat protein TolB [Hirschia baltica ATCC 49814] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 161/398 (40%), Positives = 231/398 (58%), Gaps = 19/398 (4%) Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 +G +++V+ DL S +F +IS D+F +K + +P F DW + A L+ G+ I + Sbjct: 55 VGSDIAQVIRNDLAGSGLFRMISPDAFVEKNLDIAVLPTFADWKVINADALLVGKTIIDP 114 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + +FRL+DV KQ+ +++ SS SWR++AH I+DDIY+ +T + G F+SRI++ Sbjct: 115 TGSMATQFRLFDVFTGKQLYSQEYTVSSRDSWRRMAHIIADDIYEQLTPDSGYFDSRIVY 174 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDIL 237 + ES L +MD+DGAN LT R ++ PRF P+ Q + Y D + L Sbjct: 175 IDESGPKTKRVRRLAIMDQDGANPENLTDGRIEVQ-TPRFDPSSQTIIYTALVPDARNPL 233 Query: 238 ----RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 RVYL D R + IG++ A RF+ +G +S+ +D DIY +DL Sbjct: 234 LERRRVYLFDIETGRQ-EVIGDYGLTSFAARFAPDGNSVAMSLAEDGNSDIYILDLARRQ 292 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-------- 345 RLTN L I+ S SYSPD +IVF SDR G QLY+M ++GSD+ + + Sbjct: 293 RTRLTNNLAIDTSPSYSPDGKEIVFTSDRGGSPQLYIMNADGSDRNCENGPRNKVCRITF 352 Query: 346 -EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + SY PVWSP+GDLIAFTK S +F IGV+K DG+ ER L D ++ PTWSP+GR + Sbjct: 353 GQGSYSTPVWSPRGDLIAFTKQSKGRFEIGVIKTDGTGERSLTSDYLVEGPTWSPNGRVI 412 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 IF ++ G S L+SIDL+GRN + T ASDP W Sbjct: 413 IFFKEARGGRPS-LWSIDLSGRNLKRVPTRGDASDPAW 449 >gi|148284009|ref|YP_001248099.1| protein precursor [Orientia tsutsugamushi str. Boryong] gi|226705886|sp|A5CBX4|TOLB_ORITB RecName: Full=Protein tolB; Flags: Precursor gi|146739448|emb|CAM79084.1| protein precursor [Orientia tsutsugamushi str. Boryong] Length = 453 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/415 (35%), Positives = 230/415 (55%), Gaps = 13/415 (3%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDE--LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 +K+ + P++I F S +E L + ++S DL S +F IS D F + Sbjct: 39 IKITKGNCTQIPIAINFFSAKSNEEHDLSQNIVSIISNDLNISKIFAPISSDLFIETEQG 98 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 IP F W+ + A +L+ G + K +V F +WDV K+I K F WR Sbjct: 99 VAHIPLFTAWSQINANILINGEITKIDSTDFKVTFVIWDVFSAKEITRKSFTFPSQLWRS 158 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 AH I+D IY+ +TG KG+FN++I++VSES S + +MD+DGAN Y+T ++ + Sbjct: 159 TAHKIADQIYKHVTGSKGNFNTKIVYVSESNSSNRKIRRIAIMDQDGANHNYITNGKNHV 218 Query: 214 LFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + P FSP ++ Y +Y ++ +R++ +++ + K + +F + +PRFS +G + Sbjct: 219 I-TPVFSPKNNQILYVSYHNKIPTVRIHDLNSGNN---KILASFNGITFSPRFSPDGNKI 274 Query: 273 LIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 L+S IY ++L + ++LT IN S SYSPD S+I F SDR G Q+Y+M Sbjct: 275 LVSNSSTKNVTHIYEINLLTGKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQIYIM 334 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 G + KR++ + +Y P WSP + IAFTK +F+IGV+K DGS +R++ Sbjct: 335 NDQGGNIKRLTS-QPGAYTTPAWSPTNNYIAFTKIEAGEFSIGVIKLDGSNKRIIATKYL 393 Query: 392 LQAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++ P+W+P G+++IFSR K T KLYS+D G NE I TP ASDP W Sbjct: 394 VEGPSWAPDGKTIIFSRAYKATKSTSTKVKLYSVDYTGYNEREIQTPENASDPNW 448 >gi|157803974|ref|YP_001492523.1| translocation protein TolB [Rickettsia canadensis str. McKiel] gi|166229988|sp|A8EZF5|TOLB_RICCK RecName: Full=Protein tolB; Flags: Precursor gi|157785237|gb|ABV73738.1| hypothetical protein A1E_04055 [Rickettsia canadensis str. McKiel] Length = 444 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 163/444 (36%), Positives = 249/444 (56%), Gaps = 24/444 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSK 71 N+ ++L+ F + +A + P IA KF + + +G V +V+S Sbjct: 3 NIIYFILLL---FSCTGYALETINIECGRADPTPIAVNKFDADTSTNNIVGHDVVKVISN 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S +F+ IS SF + T + P F W + A +LV G V K +L++ F LW Sbjct: 60 DLKLSGLFHPISSASFIEDKTGIEDKPLFAAWRQINASLLVNGEVKKLESGKLKISFILW 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 D KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK Sbjct: 120 DTLLEKQLVGEILEVPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIKR 179 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + +MD DGAN +YLT +L PRF+ + K+ Y +Y + +Y D + + Sbjct: 180 -IALMDYDGANNKYLTNGTSLVL-TPRFARSVDKIFYVSYATKRRALIYEKDLKTGKE-S 236 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSP Sbjct: 237 IVSDFAGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKQLHKLTDGFGINTSPSYSP 296 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GE- 369 D +IV+ SDR G QLY+M S+GS+ KRIS SY P WSP+GD IAFTK + GE Sbjct: 297 DGKKIVYNSDRNGVPQLYIMNSDGSNVKRISFGG-GSYAAPSWSPRGDYIAFTKITRGED 355 Query: 370 ---KFAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKL 418 F IG+MK D + ER++ +++P WSP+GR ++F++ + +K+ Sbjct: 356 GSKTFNIGIMKAYPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSRAKVPGKNKI 415 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 ++IDL G NE I TP ASDP+W Sbjct: 416 FAIDLTGHNEREIITPEDASDPEW 439 >gi|209543380|ref|YP_002275609.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5] gi|209531057|gb|ACI50994.1| Tol-Pal system beta propeller repeat protein TolB [Gluconacetobacter diazotrophicus PAl 5] Length = 462 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 229/411 (55%), Gaps = 20/411 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 ++ + A +P+ I + G VS V+S DL +F IS + P Sbjct: 62 EITVDQARTAPIPIVIPALGG--DAGALVSSVISGDLGNCGLFAPISG-------SLPVG 112 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 +P F + SLGA+ LV+G LRVEFRLWDV +QI G + + RKIAH Sbjct: 113 VPDFGTYKSLGARALVSGSATTG-GGGLRVEFRLWDVLTGQQIQGTAYTAGAGDARKIAH 171 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D IY+ + GEKG FN+RI +++ S L +MD+DGAN YL+ + + Sbjct: 172 IIADVIYERLLGEKGYFNTRIAYIARSGPRAHQTTRLAIMDQDGANSHYLSGGQ-WLTLT 230 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSP ++A+ +Y + RVY+++ R + +G+F + APRF+ +G+ ++S Sbjct: 231 PRFSPTSDQLAFMSYANNRP-RVYMLNLATGRQ-QLLGDFEGISFAPRFAPDGRAVILSA 288 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + DIYSVDL + A ++T++ I+ S YSPD SQIVF SDR G QLY+M + G Sbjct: 289 TRGAGSDIYSVDLVTRAKRQITSSGAIDTSPCYSPDGSQIVFNSDRGGSPQLYIMSAGGG 348 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 D +RIS Y PVWSP+GDLIAFT+ + F++GVM DG+ ER++ + +++PT Sbjct: 349 DARRISYGNGV-YGSPVWSPRGDLIAFTRIANGSFSLGVMAPDGTGERIMTQGFTVESPT 407 Query: 397 WSPSGRSLIFSRKKDGDT-----GSKLYSIDLNGRNETLINTPAYASDPQW 442 + P+GR + F R+ S + ++D+ G +E I ASDP W Sbjct: 408 FCPNGRVIAFCRQTAAGAGGAGFSSGISTVDITGFHERAIPA-GGASDPAW 457 >gi|162146628|ref|YP_001601087.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5] gi|161785203|emb|CAP54749.1| protein tolB precursor [Gluconacetobacter diazotrophicus PAl 5] Length = 462 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 230/411 (55%), Gaps = 20/411 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 ++ + A +P+ I + G VS V+S DL +F+ IS + P Sbjct: 62 EITVDQARTAPIPIVIPALGG--DAGALVSSVISGDLGNCGLFSPISG-------SLPVG 112 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 +P F + SLGA+ LV+G LRVEFRLWDV +QI G + + RKIAH Sbjct: 113 VPDFGTYKSLGARALVSGSATTG-GGGLRVEFRLWDVLTGQQIQGTAYTAGAGDARKIAH 171 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D IY+ + GEKG FN+RI +++ S L +MD+DGAN YL+ + + Sbjct: 172 IIADVIYERLLGEKGYFNTRIAYIARSGPREHQTTRLAIMDQDGANSHYLSGGQ-WLTLT 230 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSP ++A+ +Y + RVY+++ R + +G+F + APRF+ +G+ ++S Sbjct: 231 PRFSPTSDQLAFMSYANNRP-RVYMLNLATGRQ-QLLGDFEGISFAPRFAPDGRAVILSA 288 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + DIYSVDL + A ++T++ I+ S YSPD SQIVF SDR G QLY+M + G Sbjct: 289 TRGAGSDIYSVDLVTRAKRQITSSGAIDTSPCYSPDGSQIVFNSDRGGSPQLYIMSAGGG 348 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 D +RIS Y PVWSP+GDLIAFT+ + F++GVM DG+ ER++ + +++PT Sbjct: 349 DARRISYGNGV-YGSPVWSPRGDLIAFTRIANGSFSLGVMAPDGTGERIMTQGFTVESPT 407 Query: 397 WSPSGRSLIFSRKKDGDT-----GSKLYSIDLNGRNETLINTPAYASDPQW 442 + P+GR + F R+ S + ++D+ G +E I ASDP W Sbjct: 408 FCPNGRVIAFCRQTAAGAGGAGFSSGISTVDITGFHERAIPA-GGASDPAW 457 >gi|329848730|ref|ZP_08263758.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis biprosthecum C19] gi|328843793|gb|EGF93362.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis biprosthecum C19] Length = 449 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/426 (35%), Positives = 235/426 (55%), Gaps = 8/426 (1%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFT---KFVSIDELGGKVSEVVSKDLQRSD 77 L + G ++ + A+ P++IA S + +G ++++VV DLQ S Sbjct: 23 LTAMAGSVAAQSQGPLRGTVDEADVQPLAIAIMISGTDPSGNTIGEQLTKVVINDLQSSG 82 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F I +F + + +S P +++W ++ AQ L GR +++ + R+WD+ +K Sbjct: 83 YFAPIDPRAFIETSLDVNSPPTWENWTAINAQFLANGRAYINANGQVQADVRVWDIYSQK 142 Query: 138 QII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 + G +P WR++AH +D IY+ +TGEKG F++RI FV+ES G L +M Sbjct: 143 EAFPGAGHMITPEQWRRLAHKHADAIYERLTGEKGYFDTRIAFVAESGKRGDRVKRLAMM 202 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN +YL + PRFS + ++AY D R++L D R +++ Sbjct: 203 DQDGANPQYLAVEGSGKIITPRFSADGTEIAYMAL-SADSARIFLYDLEARRG-EQVAQV 260 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R M APR+S +G + SV + DIY +L + + RLT+ I+ S S+S D S+I Sbjct: 261 RGMAFAPRYSPDGTKLAFSVSQGANSDIYVTNLNTRSLSRLTSDPAIDTSPSFSADGSRI 320 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G Q+YVM ++GS +RI+ Y PV+SP+GDLIAFTK S +F+IGVM Sbjct: 321 AFTSDRGGSPQIYVMGADGSGARRITFGG-GLYSTPVFSPKGDLIAFTKQSKGRFSIGVM 379 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 DGS ERLL + PTW+P+GR ++F R+ G S L+ +++NGR E + Sbjct: 380 NPDGSGERLLTSSYLEEGPTWAPNGRYIMFFREPPGGMPS-LWMVEVNGRIERPVPYTGG 438 Query: 437 ASDPQW 442 ASDP W Sbjct: 439 ASDPAW 444 >gi|94496181|ref|ZP_01302759.1| TolB-like protein [Sphingomonas sp. SKA58] gi|94424360|gb|EAT09383.1| TolB-like protein [Sphingomonas sp. SKA58] Length = 444 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 155/395 (39%), Positives = 225/395 (56%), Gaps = 11/395 (2%) Query: 51 AFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQ 109 A T S +LG K++EV++ DL+ S +F+ S S I P+ + P++Q W + Q Sbjct: 53 ADTPAGSASDLGRKIAEVIASDLKSSGLFD-PSGPSGLPAIPFPEVTFPQYQKWGAY--Q 109 Query: 110 VLVTGRVIKEGKDR-LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 LV G V G + + V L+DV ++++ + + +P WR+ AH +D IY ++G Sbjct: 110 ALVQGFVRTSGGEADITVGCYLYDVALQQELTRQGYVVAPRDWRRAAHKCADAIYARLSG 169 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 E F+SRI +++ES G L +MD DGAN R++T + I PRFSP+ + + Y Sbjct: 170 ESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFIT-NGQSIALTPRFSPDYKSIVY 228 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 +Y + R+Y+ D + + + + APR+S +G+ L S+ DIY V Sbjct: 229 VSYLGSRV-RLYVYDIGTGQQ-RLVTESNNPTFAPRWSPDGRNILFSMAVAGNTDIYRVS 286 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + RLTN+ I++ SYSPD S+IVFESDR G +QLYVM ++GS+Q+RIS Sbjct: 287 ANGGSPVRLTNSPGIDVGGSYSPDGSRIVFESDRSGGQQLYVMNADGSNQRRISHGG-GR 345 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 Y P WSP+GDLIAFTK SG+ F I VM +G ER+L + PTWSP+GR L F R Sbjct: 346 YATPEWSPRGDLIAFTKLSGD-FKIAVMSPNGDNERILTNGWQDEQPTWSPNGRVLQFFR 404 Query: 409 KKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 G G S+++ +DL G NE I TP SDP W Sbjct: 405 TTPGRQGTSQVWQVDLTGVNERRIPTPLSGSDPAW 439 >gi|119383438|ref|YP_914494.1| translocation protein TolB [Paracoccus denitrificans PD1222] gi|119373205|gb|ABL68798.1| TolB, N-terminal domain protein [Paracoccus denitrificans PD1222] Length = 461 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 150/405 (37%), Positives = 236/405 (58%), Gaps = 16/405 (3%) Query: 47 PVSIAFTKFVSIDELGG-----KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 P+ A +F DE G +V +++ DL + +F I + + + ++ ++ Sbjct: 59 PMPFAIARFH--DEGGAGEYLAQVQNLIAADLTGTGLFREIPASAHIARPESFEAPVSYE 116 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISD 160 DW ++ AQ L+TG V + ++ V+FRL+DV + + G +F +S +WR+ AH +D Sbjct: 117 DWKAINAQALITGSVKVQ-GGKVVVKFRLFDVFAGQPLGDGMQFDASTGNWRRAAHKAAD 175 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 +Y +TGE F+SR+ FV E+ + + +MD DGAN+++LT ++ +PRFS Sbjct: 176 QVYSRLTGEGPYFDSRVAFVQETGPKDARRKRIGIMDYDGANVKWLT-DDSTLVLKPRFS 234 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR--SMILAPRFSSNGKRALISVQK 278 P+ ++ Y +Y + +MD A +++G + +M +PRFS +G+ + S+++ Sbjct: 235 PDGSRLLYTSYA-TGFPQAMMMDVN-SLAARQLGAGQQGTMSFSPRFSPDGRWIVYSLEQ 292 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + DIY +D + A LTN I S SYSPD QIVFESDR G QLYVM +NG + Sbjct: 293 NGNTDIYQMDAATGAQRALTNAPSIETSPSYSPDGKQIVFESDRSGTPQLYVMGANGGEP 352 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 +RIS E Y PVWSP+GD+IAFT+ G KF IGVM+ DGS+E++L E + PTW+ Sbjct: 353 RRISF-GEGRYGTPVWSPRGDMIAFTRQVGGKFHIGVMRTDGSEEKMLTESFLDEGPTWA 411 Query: 399 PSGRSLIFSR-KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 P+GR ++F+R GD +L+S+D+ GRN + ASDP W Sbjct: 412 PNGRVVMFTRVTPGGDGQPRLHSVDITGRNMRPVKINGAASDPDW 456 >gi|103485823|ref|YP_615384.1| translocation protein TolB [Sphingopyxis alaskensis RB2256] gi|118574599|sp|Q1GWC1|TOLB_SPHAL RecName: Full=Protein tolB; Flags: Precursor gi|98975900|gb|ABF52051.1| TolB-like protein [Sphingopyxis alaskensis RB2256] Length = 454 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/400 (36%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 44 NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDW 103 +++ S+ + D LG ++++V++ DL+RS +F I + + PRF +W Sbjct: 54 SFATASVQTVAGLRTDALGRQLADVIAADLERSGLFEPIGPNGVRAIGRAEVQAPRFGEW 113 Query: 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 + GA+ +V G V L V L+D +++ K F PA WR+ AH +D IY Sbjct: 114 QARGAENVVHGFVDAGSNGSLIVGCYLYDTALGSELVRKGFEIQPADWRRAAHKCADAIY 173 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ++GE F+SR+ +++ES G L +MD DG N R++T + + PRFSP+ Sbjct: 174 SRLSGEAPFFDSRVAYIAESGPKGNRIKRLAIMDSDGGNHRFIT-NGQALALSPRFSPDY 232 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 +K+ Y +Y + D +RV++ D + + R+ APR+S +G + L S+ D Sbjct: 233 KKIVYVSYLN-DRVRVFIYDV-ASGTQRLVTESRNPTFAPRWSPDGTQILYSMAVGGNTD 290 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY + RLT I++ S+SPD +IVFESDR G +QLYVM +GS+Q+RIS Sbjct: 291 IYRISANGGTPVRLTTAPGIDVGGSFSPDGRKIVFESDRSGSQQLYVMNIDGSNQQRISF 350 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 Y P WSP+GDLIAFT+ G +F IGVM G R+L +APTWSP+GR Sbjct: 351 GG-GRYATPEWSPRGDLIAFTRMGGGEFRIGVMTPSGGGVRMLTNGWQDEAPTWSPNGRV 409 Query: 404 LIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 + F R G G S L+ +DL G N + TP SDP W Sbjct: 410 IQFFRTTPGREGRSSLWQVDLTGVNLRRLPTPQDGSDPSW 449 >gi|294013406|ref|YP_003546866.1| TolB protein [Sphingobium japonicum UT26S] gi|292676736|dbj|BAI98254.1| TolB protein [Sphingobium japonicum UT26S] Length = 417 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 151/393 (38%), Positives = 218/393 (55%), Gaps = 11/393 (2%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQVL 111 T S ELG K++EV++ DL+ S +F+ + I P+ + P + W + Q L Sbjct: 28 TPAGSSTELGRKIAEVIASDLKGSGLFDPSGPNGIP-TIAFPEVTSPAYDKWGAY--QAL 84 Query: 112 VTGRVIKEGKDR-LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 V G V G + + V L+DV ++++ + + SP WR+ AH +D IY ++GE Sbjct: 85 VQGFVRTTGGEADITVGCYLYDVALKQELTRQGYVVSPRDWRRAAHKCADAIYARLSGES 144 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 F+SRI +++ES G L +MD DGAN R++T + I PRFSP+ + + Y + Sbjct: 145 PFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFIT-NGQSIALTPRFSPDYKSIVYVS 203 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 Y + + R+Y+ D + + + + APR+S +G+ L S+ DIY V Sbjct: 204 YLNNRV-RIYVYDIGTGKQ-RLVTESSNATFAPRWSPDGRSILFSMAIAGNTDIYRVSAT 261 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 A +RLT I++ SYSPD QIVFESDR G +Q+YVM ++GS Q+RIS Y Sbjct: 262 GGAPQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQQIYVMNADGSGQRRISHGG-GRYA 320 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 P WSP+GDLIAFTK SG+ F I VM G ER+L + P+WSP+GR L F R Sbjct: 321 TPEWSPRGDLIAFTKISGD-FKIAVMTPSGDNERILTNGWQDEQPSWSPNGRVLQFFRTT 379 Query: 411 DGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 G G S+++ +DL G NE I TP SDP W Sbjct: 380 PGREGSSQVWQVDLTGVNERRIPTPLSGSDPAW 412 >gi|307294753|ref|ZP_07574595.1| Tol-Pal system beta propeller repeat protein TolB [Sphingobium chlorophenolicum L-1] gi|306879227|gb|EFN10445.1| Tol-Pal system beta propeller repeat protein TolB [Sphingobium chlorophenolicum L-1] Length = 449 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 218/393 (55%), Gaps = 11/393 (2%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQVL 111 T S ELG K++EV++ DL+ S +F+ + I P+ + P + W + Q L Sbjct: 60 TPAGSSTELGRKIAEVIASDLKGSGLFDPSGPNGIP-TIAFPEVTSPAYDKWGAY--QAL 116 Query: 112 VTGRVIKEGKDR-LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 V G V G + + V L+DV ++++ + + SP WR+ AH +D IY ++GE Sbjct: 117 VQGFVRTTGGEADITVGCYLYDVALKQELTRQGYVVSPRDWRRAAHKCADAIYARLSGES 176 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 F+SRI +++ES G L +MD DGAN R++T + I PRFSP+ + + Y + Sbjct: 177 PFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFIT-NGQSIALTPRFSPDYKSIVYVS 235 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 Y + + R+Y+ D + + + + APR+S +G+ L S+ D+Y V Sbjct: 236 YLNNRV-RIYIYDIGTGKQ-RLVTESNNATFAPRWSPDGRNILFSMAVAGNTDVYRVSAT 293 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 A +RLT I++ SYSPD QIVFESDR G +Q+YVM ++GS Q+RIS Y Sbjct: 294 GGAPQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQQVYVMNADGSGQRRISHGG-GRYA 352 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 P WSP+GDLIAFTK SG+ F I VM G ER+L + P+WSP+GR L F R Sbjct: 353 TPEWSPRGDLIAFTKISGD-FKIAVMTPSGDNERILTNGWQDEQPSWSPNGRVLQFFRTT 411 Query: 411 DGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 G G S+++ +DL G NE I TP SDP W Sbjct: 412 PGREGSSQVWQVDLTGVNERRIPTPLSGSDPAW 444 >gi|85710724|ref|ZP_01041788.1| translocation protein TolB precursor [Erythrobacter sp. NAP1] gi|85687902|gb|EAQ27907.1| translocation protein TolB precursor [Erythrobacter sp. NAP1] Length = 473 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/411 (37%), Positives = 226/411 (54%), Gaps = 14/411 (3%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A AT+S +P + T LG +++ V++ +L+ + +F DS + Sbjct: 70 AIPSFATDSNRPTPANSDGTA-----ALGREIARVITANLRNNGLFKPTGPDSLPEPRFQ 124 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 + P + W GA++LV G V G DRL V L+DV + ++I + + PA WR+ Sbjct: 125 QITAPSWSSWTGRGAEMLVHGYVRARGDDRLVVGCYLYDVALQDELIREGWVVRPADWRR 184 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 AH SD IY +TGE F+SRI +++E+ L VMD DGAN R+LT Sbjct: 185 AAHKCSDLIYARLTGESPFFDSRIAYIAETGPKDNRVKRLAVMDSDGANHRFLTLGSATA 244 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L PR+SP+ K+ Y +Y D + R+Y+ D + N ++ LAPR+S +G+ L Sbjct: 245 L-TPRYSPDYSKILYLSYVDGNP-RIYVYDIGSGQQTLVTEN-QNPTLAPRWSPDGRHIL 301 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 S+ DIY V + +ERLT+T I+I SYSPD +IVFESDR G +Q YVM + Sbjct: 302 YSMAVAGNTDIYRVPVTGGRSERLTDTPGIDIGGSYSPDGRRIVFESDRSGTQQCYVMDA 361 Query: 334 NGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +GS+Q+RI+ + A+ P WSP+GD IAFT+ +G+ F + VM G R+L Sbjct: 362 DGSNQRRITFFGGRCAT---PEWSPRGDQIAFTRIAGD-FNVAVMTPSGGSLRVLTNGWQ 417 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 +APTW+P+GR + F R S L+ +DL GRNE + TP ASDP W Sbjct: 418 DEAPTWAPNGRIIQFFRTTRDAGRSSLWQVDLTGRNERRLPTPVDASDPAW 468 >gi|58040119|ref|YP_192083.1| translocation protein TolB [Gluconobacter oxydans 621H] gi|67461870|sp|Q5FQB9|TOLB_GLUOX RecName: Full=Protein tolB; Flags: Precursor gi|58002533|gb|AAW61427.1| TolB protein [Gluconobacter oxydans 621H] Length = 453 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 156/435 (35%), Positives = 230/435 (52%), Gaps = 31/435 (7%) Query: 25 GGFFPTSIHAFVK-----------VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 GG T + AF + + + A P+ I F + LG ++S V++ DL Sbjct: 28 GGLLATPLAAFAQSGAASGPGEAEITVDQARQEPIPIVVPNFGA--GLGEQISGVITSDL 85 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + +F ++S P S P F + GA+ V G +RVE RLWDV Sbjct: 86 NGTGLFKVMSGS------VPPGSTPDFSALKAQGARAAVA--GQAVGAGSVRVEMRLWDV 137 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +Q+ G + +S ++WR+IAH I+D IY+ + GEKG F++RI +++ + L Sbjct: 138 LSGQQLQGTAYTASNSNWRRIAHIIADVIYERMLGEKGYFDTRIAYIARTGPRHHQITRL 197 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD+DGAN R LT + + PRF+P + ++A+ +Y + + RVYL D R + + Sbjct: 198 ALMDQDGANERMLT-GGEWLTLTPRFNPVRDQIAFMSYAN-NRPRVYLFDLASGRQ-QIL 254 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT-LFINISASYSPD 312 G F + APRFS G ++S + DI+ VDL S A ++TN+ I+ S +SPD Sbjct: 255 GEFAGISFAPRFSPTGGSVVLSATRGGGSDIFVVDLASRAKRQITNSNGAIDTSPCFSPD 314 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 SQIVF SDR G QLY+M ++G KRIS Y PVWSP+GDLIAFT+ F+ Sbjct: 315 GSQIVFNSDRGGSPQLYIMSASGGAAKRISYGS-GQYGSPVWSPRGDLIAFTRIGSGGFS 373 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGDTGSKLYSIDLNGRN 427 +GVM DG+ ER+L + + T+ P+GR L F R+ S + +ID+ G N Sbjct: 374 LGVMNPDGTGERILTQGFTVDGATFCPNGRVLAFCRQSASGAGGAGFASGIGTIDITGFN 433 Query: 428 ETLINTPAYASDPQW 442 E I ASDP W Sbjct: 434 ERPIRISTGASDPAW 448 >gi|87198418|ref|YP_495675.1| translocation protein TolB [Novosphingobium aromaticivorans DSM 12444] gi|119371031|sp|Q2GBD2|TOLB1_NOVAD RecName: Full=Protein tolB 1; Flags: Precursor gi|87134099|gb|ABD24841.1| TolB-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 451 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/411 (36%), Positives = 223/411 (54%), Gaps = 14/411 (3%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A ATN+ +P S S LG +++V+S +L+ + +F + +S + Sbjct: 48 AIPAFATNADVPTPTSAG-----STSALGQALAQVISANLRNNGLFKPVGPESLPRPGFE 102 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 P F W++ A++LV G V G +L V L+DV ++Q+ + +PA WR+ Sbjct: 103 QVQAPDFAVWSARSAEMLVQGYVRANGDGQLTVGCYLYDVALKQQLEKAGWTVAPADWRR 162 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 AH +D IY ++GE F+SR+ +++ES L +MD DGAN RYLT S Sbjct: 163 AAHKCADMIYARLSGESPFFDSRVAYIAESGPKDRRMKRLAIMDSDGANHRYLT-SGQAT 221 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 PRFSP+ + + Y +Y + R+Y+ D + + + APR+S +GK L Sbjct: 222 ALTPRFSPDYKSILYLSYLNGRP-RIYVYDLAANTQ-RLVTETPGPTFAPRWSPDGKWIL 279 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 S+ DIY V A++RLT+T I++ S+SPD S+IVFESDR G +Q+YVM + Sbjct: 280 YSMATAGNTDIYKVPASGGASQRLTDTPGIDVGGSFSPDGSRIVFESDRSGSQQIYVMNA 339 Query: 334 NGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +GSD +RIS + A+ P WSP+GD IAFT G I V+ G R L + Sbjct: 340 DGSDHRRISFFGGRAAT---PEWSPRGDQIAFTHIVG-NLRIAVVSPGGGDLRYLTDSWQ 395 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 +APTWSP+GR + F R + G + ++ +DL GRNE ++TP ASDP W Sbjct: 396 DEAPTWSPNGRIIQFFRTEKGSGKASVWQVDLTGRNERRLSTPGDASDPAW 446 >gi|149185617|ref|ZP_01863933.1| translocation protein TolB precursor [Erythrobacter sp. SD-21] gi|148830837|gb|EDL49272.1| translocation protein TolB precursor [Erythrobacter sp. SD-21] Length = 460 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 214/384 (55%), Gaps = 6/384 (1%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 + LG +++ V++ +L+ + +F DS + + P + W+ GA++LV G V Sbjct: 78 EALGLEMARVITANLRNNGLFKPAGPDSLPRPEFANITSPVWGTWSVRGAEMLVHGYVRA 137 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 DRL V L+D+ +++++ + + SPA WR+ AH SD IY +TGE F+SRI Sbjct: 138 RSDDRLTVGCYLYDMALQQRLVAEGWVVSPADWRRAAHKCSDLIYSRLTGESPFFDSRIA 197 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +++E+ L +MD DGAN R++T R L PR+SP+ +++ Y +Y D + R Sbjct: 198 YIAETGPKDNRVKRLAIMDSDGANHRFITTGRSTAL-TPRYSPDYKRLVYLSYVDGNP-R 255 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y+ D + + + APR+S +G+ L S+ DIY V Q +ERLT Sbjct: 256 IYVYDIGTG-SQTLVTQSDNPTFAPRWSPDGRWILYSMAVGGNTDIYRVSAQGGRSERLT 314 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 +T I+I SYSPD +IVFESDR G +Q YVM ++GS+Q+RIS + P WSP+G Sbjct: 315 DTPGIDIGGSYSPDGRRIVFESDRSGAQQCYVMDADGSNQRRISFGG-SRCATPEWSPRG 373 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 D IAFT S F I VM G R L +APTW+P+GR + F R + + L Sbjct: 374 DQIAFTNAS--SFNISVMSPSGGNVRTLTRGWQDEAPTWAPNGRIIQFFRTERNSGKTSL 431 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 + +DL G NE + TP ASDP W Sbjct: 432 WQVDLTGENERSLPTPVDASDPAW 455 >gi|85374728|ref|YP_458790.1| translocation protein TolB [Erythrobacter litoralis HTCC2594] gi|84787811|gb|ABC63993.1| Tol biopolymer transport system [Erythrobacter litoralis HTCC2594] Length = 471 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 215/384 (55%), Gaps = 9/384 (2%) Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 LG +++ V+S +L+ + +F D + + P++ W++ GA++LV G V G Sbjct: 90 LGAELARVISNNLRNNGLFKPSGPDGLPRPTFPQITDPQWAVWSNRGAEMLVHGYVRARG 149 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 L V L+D+ R +++ + PA WR+ AH SD +Y +TGE F+SRI ++ Sbjct: 150 DGNLVVGCYLYDMALRDELVRSGWVVPPADWRRAAHKCSDLVYSRLTGESPFFDSRIAYI 209 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +E+ L +MD DGAN R++T R L PR+SP+ +++ Y +Y D + R+Y Sbjct: 210 AETGPKDNRTKRLAIMDSDGANHRFITTGRATAL-TPRYSPDYRRLLYLSYVDGNP-RIY 267 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D R + + + APR+S +G+ L S+ + DIY V + + RLT Sbjct: 268 IYDIGTGRQ-QLVTESTNPTFAPRWSPDGRWILYSMAVNGNTDIYRVSAEGGPSVRLTTE 326 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQG 358 I++ SYSPD SQIVFESDR G +Q+Y+M S+G++Q+RIS + A+ P WSP+G Sbjct: 327 PGIDVGGSYSPDGSQIVFESDRSGSQQVYIMNSDGTNQRRISFFGGRAAT---PEWSPRG 383 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 D IAFT G+ F I VM +G R L +APTW+P+GR + F R + + L Sbjct: 384 DQIAFTYIPGD-FNIAVMSPNGRNFRKLSNGWQDEAPTWAPNGRIIQFFRTERNTGRTAL 442 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 Y +DL G N +NTP ASDP W Sbjct: 443 YQVDLTGDNLRRLNTPVDASDPAW 466 >gi|88607556|ref|YP_505595.1| translocation protein TolB [Anaplasma phagocytophilum HZ] gi|88598619|gb|ABD44089.1| TolB family protein [Anaplasma phagocytophilum HZ] Length = 435 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 238/456 (52%), Gaps = 33/456 (7%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID- 59 MS+R +A LL GG A ++++ N +SIAF S + Sbjct: 1 MSIRLGVATFF------IFLLFCCGGAV-----ASLRLSITKGNTGKLSIAFAPLHSFES 49 Query: 60 ----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP--DSIPRFQDWNSLGAQVLVT 113 ++G ++++ KDL + +F+ + +I +P D W L +L+T Sbjct: 50 NLAQKIGESCTDIILKDLNNTGLFDA------RIEILDPTSDGAAYSNVWRELKHDILLT 103 Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G V + R+ ++ +WDV K++ GK F WR+ AHT++D IY ITG G F Sbjct: 104 GNVQELSHGRMGIKLFVWDVAAEKKLSGKSFNFEIGGWRRAAHTVADHIYTRITGNGGYF 163 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA-TYD 232 +S+I ++++ + + + +MD DGAN Y + + L PRFSP+ + + Y T Sbjct: 164 DSKIAYIADMLG----ERRIALMDYDGANSVYASIDNNGWLSFPRFSPDTKSIVYTLTSQ 219 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 RV L D R + + IG ++ + RFS +G+ L+S + + DIYS L S Sbjct: 220 SSPSGRVMLYDMRREVSSLLIG-MSGIVSSVRFSPSGREILLSESLNGSTDIYSFSLISK 278 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 RLT F+N SASYSPD IVF SDR+G LY+M +NGS+ ++IS Y P Sbjct: 279 KLTRLTADEFMNTSASYSPDEKSIVFASDRDGGSHLYIMDANGSNPRKISSG-SGRYMSP 337 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR--KK 410 VWSP G IAFTK G + IG+M+ +GS+ER++ D + P+W+P+G+++++++ ++ Sbjct: 338 VWSPNGTWIAFTKVKGARCYIGIMRPNGSKERMIASDCFAEGPSWAPNGQAVLYTKHVQR 397 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 ++L +DL+ N INTP+ A W M Sbjct: 398 VEHLATELAMVDLSSMNRRAINTPSDALIAHWSNTM 433 >gi|87199039|ref|YP_496296.1| translocation protein TolB [Novosphingobium aromaticivorans DSM 12444] gi|119371032|sp|Q2G9L1|TOLB2_NOVAD RecName: Full=Protein tolB 2; Flags: Precursor gi|87134720|gb|ABD25462.1| TolB-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 461 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/388 (36%), Positives = 212/388 (54%), Gaps = 9/388 (2%) Query: 57 SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 + + LG V+ VV DL+ + +F + D+ + P F W A++LV G V Sbjct: 76 TTEALGRNVARVVFNDLKNNGLFKPVGPDALPAIAFPQVAAPAFDAWRGRSAEMLVQGFV 135 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 RL V L+DV ++ + + P WR+ AH +D +Y ++GE F+S+ Sbjct: 136 KANEDGRLTVGCYLYDVALGSELARQGYVVKPEEWRRAAHKCADMVYSRLSGESPFFDSK 195 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +++E+ + L +MD DGAN R++T + L PR+SP+ ++ Y +Y + Sbjct: 196 IAYIAETGPKDRRRKQLAIMDSDGANHRFITNGQATAL-TPRYSPDYSQIVYLSYLN-GA 253 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R+Y+ + + K + + + APR+S +GK L S+ DIY V + A+ R Sbjct: 254 PRIYIYNIGTGQQ-KLVTSSTNPTFAPRWSPDGKWILYSMSVAGNTDIYRVSVNGGASTR 312 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVW 354 LT++ I++ SYSPD S+IVFESDR G +QLYVM ++GS+QKRIS + A+ P W Sbjct: 313 LTDSPGIDVGGSYSPDGSRIVFESDRSGSQQLYVMNADGSNQKRISFFGGRAAT---PEW 369 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP+GD IAFT G F I V G R L + +APTWSP+GR + F R + G Sbjct: 370 SPRGDQIAFTHLGG-NFRIAVTDPSGGNMRFLTDSWQDEAPTWSPNGRIVQFFRTERGSG 428 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQW 442 + ++ +DL GRNE +NTP SDP W Sbjct: 429 KTGIWQVDLTGRNERKLNTPVDGSDPAW 456 >gi|117923781|ref|YP_864398.1| TolB domain-containing protein [Magnetococcus sp. MC-1] gi|117607537|gb|ABK42992.1| TolB, N-terminal domain protein [Magnetococcus sp. MC-1] Length = 450 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/430 (34%), Positives = 240/430 (55%), Gaps = 31/430 (7%) Query: 32 IHA-FVKVATNSANYSPVSIAFTKFVSI---------DELGGKVSEVVSKDLQRSDVFNL 81 +HA + + P+ IA F S+ D +++ +V DL S +F Sbjct: 28 VHAQGMMIEVQKQGLEPMPIAIPSFASVGLNGHVEVGDRFSHQLTGLVISDLSGSGLFRP 87 Query: 82 ISQDSFKQKITNPDSI----PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 + Q F Q D + P F+ W +GA +V G + G R++V+F L D+ R Sbjct: 88 LEQRGFLQP---SDKLWQQGPDFRKWRLVGADAVVQGAITYRGS-RIQVDFFLHDIS-RG 142 Query: 138 QIIGK--KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 +IGK +F + P +WR +AH ++D+IY +TGE+ F SRI FV++ ++ L + Sbjct: 143 TLIGKGWRFTTKPENWRHVAHRVADEIYTRLTGERAYFTSRIAFVAKRDK----QSFLSM 198 Query: 196 MDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 MD DGAN L R+ ++ PRFSPN +++ Y +Y+ + R+YL D + KR Sbjct: 199 MDADGANRMDLKVKGRNDLVLTPRFSPNGEQLLYISYESSEP-RIYLWDLYTGKRVKR-S 256 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N+ + P +S +G R +++ KD +IY +D+++ + +RLT I+ S S+SPD Sbjct: 257 NYPGLNSTPAWSPDGNRMALTLSKDGNSEIYVIDMRNQSLQRLTYNAAIDTSPSWSPDGR 316 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++VF SDR G QLY+M ++GSD +R++Q ++S P WS +GD IAF + G KF I Sbjct: 317 RMVFTSDRAGTPQLYIMDADGSDVRRLTQRGQSST-APSWSNRGDKIAFVRGGGGKFRIA 375 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN--ETLIN 432 V+ G E+LL + ++PTWSP+GR ++FSR++ G + ++L++ID+ G N E + Sbjct: 376 VIDPTGRDEQLLTDSWMDESPTWSPNGRVILFSRQQQGSSRTRLFTIDITGFNEQEVPLE 435 Query: 433 TPAYASDPQW 442 ASDP W Sbjct: 436 QDISASDPSW 445 >gi|326388397|ref|ZP_08209993.1| translocation protein TolB [Novosphingobium nitrogenifigens DSM 19370] gi|326207129|gb|EGD57950.1| translocation protein TolB [Novosphingobium nitrogenifigens DSM 19370] Length = 478 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 210/387 (54%), Gaps = 11/387 (2%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 + +G ++ VV DL+ + +F DS + P F W + A++LV G V Sbjct: 95 EAVGRNLARVVFNDLKFNGLFKPTGPDSLPGIAYAEVTAPAFSGWRARSAEMLVQGFVKG 154 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 RL V L+DV +++ + + P WR+ AH +D +Y ++GE F+S+I Sbjct: 155 GADGRLTVGCYLYDVALGQELAREGYVVKPEDWRRAAHKCADMVYSRLSGESPFFDSKIA 214 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +++E+ + L +MD DGAN R++T + L PR+SP+ K+ Y +Y D R Sbjct: 215 YIAETGPKDHRRKQLAIMDSDGANHRFITNGQATAL-TPRYSPDYSKILYLSYLDGRP-R 272 Query: 239 VYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +Y+ D I +R + + APR+S +GK L S+ DIY V +ERL Sbjct: 273 IYVYD--IGSGSQRLVTEGKGPTFAPRWSPDGKSILYSMAIAGNTDIYRVPASGGPSERL 330 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWS 355 TNT INI S+SPD +IVFESDR G +Q+YVM S+GS Q RIS + A+ P WS Sbjct: 331 TNTPGINIGGSFSPDGRKIVFESDRSGSQQVYVMNSDGSGQHRISFFGGRAAT---PEWS 387 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 P+GD IAFT +G + VM DG+ R L + +APTW+P+GR + F R + Sbjct: 388 PRGDQIAFTHIAG-NLRVAVMDPDGNNLRYLTDSWQDEAPTWAPNGRIIQFFRTEKNTGH 446 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQW 442 + ++ +DL GRNE + TP ASDP W Sbjct: 447 TSIWQVDLTGRNERRLKTPVDASDPAW 473 >gi|296283271|ref|ZP_06861269.1| translocation protein TolB [Citromicrobium bathyomarinum JL354] Length = 467 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 211/384 (54%), Gaps = 9/384 (2%) Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 LG +++ V++ DLQ + +F D+ + + P + W GA++LV G V Sbjct: 86 LGAELARVITADLQNNGLFAPTGPDALPKPNYPQITDPVWNMWRMRGAEMLVQGYVRPRA 145 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 +L V L+DV ++ + P+ WR+ AH +D +Y +TGE F+SRI ++ Sbjct: 146 DGKLVVGCYLYDVALNDELARSGWVVPPSDWRRAAHKCADLVYSRLTGESPFFDSRIAYI 205 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +E+ L +MD DGAN R++T R L PR+SP+ +K+ Y +Y D + R+Y Sbjct: 206 AETGPKDNRTKRLAIMDSDGANHRFITTGRATAL-TPRYSPDYRKLMYLSYVDGNP-RIY 263 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D + + + APR+S +G+ L S+ + DIY V A+ERLT+ Sbjct: 264 IYDIGTGKQ-TLVTESSNPTFAPRWSPDGRWVLYSMAVNGNTDIYRVSANGGASERLTDA 322 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQG 358 I++ SYSPD ++IVFESDR G +Q+Y+M ++GS+Q+RI+ + A+ P WSP+G Sbjct: 323 PGIDVGGSYSPDGTRIVFESDRSGAQQIYMMNADGSNQRRITFFGGRAAT---PEWSPRG 379 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 D IAFT G+ F I M DG R L + +APTW+P+GR L F R + + + Sbjct: 380 DQIAFTYIPGD-FNIATMSPDGKNFRKLTDGWQDEAPTWAPNGRILQFFRTERNTGRTAI 438 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 Y +DL G N + TP ASDP W Sbjct: 439 YQVDLTGENLRRLPTPVDASDPAW 462 >gi|218516474|ref|ZP_03513314.1| translocation protein TolB [Rhizobium etli 8C-3] Length = 229 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/231 (49%), Positives = 162/231 (70%), Gaps = 3/231 (1%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSPN+Q+V Y ++ ++ RVY++ + + +GNF M +PRFS +G++ ++S+ Sbjct: 2 PRFSPNRQEVTYMSFANQQP-RVYMLQLETGQR-EVVGNFPGMTFSPRFSPDGQKVIMSL 59 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ FESDR GK Q+YVM ++GS Sbjct: 60 QQEGNSNIYTMDLRSRKTTRLTSTAAIDTSPSYSPDGARVSFESDRGGKPQIYVMNADGS 119 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 Q RIS + SY PVWSP+GDLIAFTK +G KF+IGVMK DGS ER+L + + PT Sbjct: 120 GQTRISFG-DGSYSTPVWSPRGDLIAFTKQAGGKFSIGVMKPDGSGERILTTGFHNEGPT 178 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 W+P+GR L+F R+ G G +LYSIDL G NE L+ TP+Y SDP W ++ Sbjct: 179 WAPNGRVLMFFRQAAGAGGPQLYSIDLTGYNEQLVKTPSYGSDPAWSPLLE 229 >gi|58698639|ref|ZP_00373533.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225629902|ref|YP_002726693.1| translocation protein TolB precursor [Wolbachia sp. wRi] gi|254764846|sp|C0R560|TOLB_WOLWR RecName: Full=Protein tolB; Flags: Precursor gi|58534840|gb|EAL58945.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225591883|gb|ACN94902.1| translocation protein TolB precursor [Wolbachia sp. wRi] Length = 420 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 149/434 (34%), Positives = 231/434 (53%), Gaps = 28/434 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ + K W S +VT + + L + FRL+D Sbjct: 67 CGLFNVKRGAEAESK-----------SWKS---DTVVTVSLSEISGSALELSFRLFDTFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRI 253 VM++DG+NI+YLT + D+ + PRFSPN + + Y +Y + + Y++ + D I Sbjct: 173 VMNQDGSNIKYLT-NGDRFVSTPRFSPNGKGIVYISYANG---KSYIILKNLKDNTESII 228 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 229 STFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQ 288 Query: 314 SQIVFESDREGKEQLYVMQ-SNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SD G +QLYV+ +N S + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 289 KYMAFSSDISGSQQLYVIDFTNKSKKPKRISFG-SGRYATPVWSPKGDLIAFTKIQSGKF 347 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY +DL +N+ ++ Sbjct: 348 YIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTR-TESPSNSKLYLVDLVKKNQKMV 406 Query: 432 NTPAYASDPQWVGF 445 +TP AS P W F Sbjct: 407 STPTNASLPDWSYF 420 >gi|42519955|ref|NP_965870.1| translocation protein TolB [Wolbachia endosymbiont of Drosophila melanogaster] gi|67461989|sp|Q73IV6|TOLB_WOLPM RecName: Full=Protein tolB; Flags: Precursor gi|42409692|gb|AAS13804.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 420 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 149/434 (34%), Positives = 231/434 (53%), Gaps = 28/434 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ + K W S +VT + + L + FRL+D Sbjct: 67 CGLFNVKRSAEAESK-----------SWKS---DTVVTVSLSEISGSALELSFRLFDAFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRI 253 VM++DG+NI+YLT + D+ + PRFSPN + + Y +Y + + Y++ + D I Sbjct: 173 VMNQDGSNIKYLT-NGDRFVSTPRFSPNGKGIVYISYANG---KSYIILKNLKDNTESII 228 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 229 SAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQ 288 Query: 314 SQIVFESDREGKEQLYVMQ-SNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SD G +QLYV+ +N S + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 289 KYMAFSSDISGSQQLYVIDFTNKSKKPKRISFG-SGRYATPVWSPKGDLIAFTKIQSGKF 347 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY +DL +N+ ++ Sbjct: 348 YIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTR-TESPSNSKLYLVDLVKKNQKMV 406 Query: 432 NTPAYASDPQWVGF 445 +TP AS P W F Sbjct: 407 STPTNASLPDWSYF 420 >gi|225677115|ref|ZP_03788116.1| translocation protein TolB precursor [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590843|gb|EEH12069.1| translocation protein TolB precursor [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 420 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 149/434 (34%), Positives = 231/434 (53%), Gaps = 28/434 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ + K W S +VT + + L + FRL+D Sbjct: 67 CGLFNVKRGAEAESK-----------SWKS---DTVVTVSLSEISGSALELSFRLFDAFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRI 253 VM++DG+NI+YLT + D+ + PRFSPN + + Y +Y + + Y++ + D I Sbjct: 173 VMNQDGSNIKYLT-NGDRFVSTPRFSPNGKGIVYISYANG---KSYIILKNLKDNTESII 228 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 229 SAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQ 288 Query: 314 SQIVFESDREGKEQLYVMQ-SNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SD G +QLYV+ +N S + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 289 KYMAFSSDISGSQQLYVIDFTNKSKKPKRISFG-SGRYATPVWSPKGDLIAFTKIQSGKF 347 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY +DL +N+ ++ Sbjct: 348 YIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTR-TESPSNSKLYLVDLVKKNQKMV 406 Query: 432 NTPAYASDPQWVGF 445 +TP AS P W F Sbjct: 407 STPTNASLPDWSYF 420 >gi|213019077|ref|ZP_03334884.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995186|gb|EEB55827.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 427 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 148/434 (34%), Positives = 229/434 (52%), Gaps = 30/434 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK----DLQR 75 L++ I F P S A + V +N + + +K E+ ++SE ++K +L Sbjct: 16 LVLFISLFIPYSTKAVLYVDIKKSNIGNIDLVVSKCACKTEVENELSESITKVIETNLSN 75 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN + +D+ + + W S +VT + + L + FRL D Sbjct: 76 CGLFN-VKRDA------------KVESWKS---DTVVTISLSEVSNRNLELSFRLSDSFT 119 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 ++++ + WRKI+H +SD I+ + GEKG FN++I +++E S + Sbjct: 120 NRELLTQSVVFLAKDWRKISHLVSDLIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 179 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRI 253 VM++DG+NI+YLT + ++ + PRFSPN + + Y +Y + + Y++ + D I Sbjct: 180 VMNQDGSNIKYLT-NGEKFVSTPRFSPNGKGIVYISYTNG---KSYIILKNLKDNTESII 235 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F +I APRFS +GK IS +I S+DL S T+++T I+ S S SPD Sbjct: 236 SAFEGVISAPRFSPDGKSLFISHSLSGETNILSLDLSSKRTKKITKGSAISTSPSLSPDQ 295 Query: 314 SQIVFESDREGKEQLYVM--QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +VF SD G +QLY++ KRIS Y PVWSP+GDLIAFTK KF Sbjct: 296 KYMVFSSDISGSQQLYIIDFTKKSKKPKRISFG-NGRYATPVWSPKGDLIAFTKIQSGKF 354 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 IGVMK DG +ERLL E +++P W P+GR +IF+ + + SKLY +DL +N+ ++ Sbjct: 355 YIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTN-AESPSNSKLYLVDLVKKNQKMV 413 Query: 432 NTPAYASDPQWVGF 445 TP AS P W F Sbjct: 414 FTPTNASLPDWSYF 427 >gi|190570675|ref|YP_001975033.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|226705897|sp|B3CP06|TOLB_WOLPP RecName: Full=Protein tolB; Flags: Precursor gi|190356947|emb|CAQ54333.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 418 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 148/434 (34%), Positives = 229/434 (52%), Gaps = 30/434 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK----DLQR 75 L++ I F P S A + V +N + + +K E+ ++SE ++K +L Sbjct: 7 LVLFISLFIPYSTKAVLYVDIKKSNIGNIDLVVSKCACKTEVENELSESITKVIETNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN + +D+ + + W S +VT + + L + FRL D Sbjct: 67 CGLFN-VKRDA------------KVESWKS---DTVVTISLSEVSNRNLELSFRLSDSFT 110 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 ++++ + WRKI+H +SD I+ + GEKG FN++I +++E S + Sbjct: 111 NRELLTQSVVFLAKDWRKISHLVSDLIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 170 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRI 253 VM++DG+NI+YLT + ++ + PRFSPN + + Y +Y + + Y++ + D I Sbjct: 171 VMNQDGSNIKYLT-NGEKFVSTPRFSPNGKGIVYISYTNG---KSYIILKNLKDNTESII 226 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F +I APRFS +GK IS +I S+DL S T+++T I+ S S SPD Sbjct: 227 SAFEGVISAPRFSPDGKSLFISHSLSGETNILSLDLSSKRTKKITKGSAISTSPSLSPDQ 286 Query: 314 SQIVFESDREGKEQLYVM--QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +VF SD G +QLY++ KRIS Y PVWSP+GDLIAFTK KF Sbjct: 287 KYMVFSSDISGSQQLYIIDFTKKSKKPKRISFG-NGRYATPVWSPKGDLIAFTKIQSGKF 345 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 IGVMK DG +ERLL E +++P W P+GR +IF+ + + SKLY +DL +N+ ++ Sbjct: 346 YIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTN-AESPSNSKLYLVDLVKKNQKMV 404 Query: 432 NTPAYASDPQWVGF 445 TP AS P W F Sbjct: 405 FTPTNASLPDWSYF 418 >gi|99034160|ref|ZP_01314250.1| hypothetical protein Wendoof_01000957 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 396 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 139/408 (34%), Positives = 215/408 (52%), Gaps = 28/408 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ + K W S +VT + + L + FRL+D Sbjct: 67 CGLFNVKRGAEAESK-----------SWKS---DTVVTVSLSEISGSALELSFRLFDAFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRI 253 VM++DG+NI+YLT + D+ + PRFSPN + + Y +Y + + Y++ + D I Sbjct: 173 VMNQDGSNIKYLT-NGDRFVSTPRFSPNGKGIVYISYANG---KSYIILKNLKDNTESII 228 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 229 SAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQ 288 Query: 314 SQIVFESDREGKEQLYVMQ-SNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SD G +QLYV+ +N S + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 289 KYMAFSSDISGSQQLYVIDFTNKSKKPKRISFG-SGRYATPVWSPKGDLIAFTKIQSGKF 347 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY Sbjct: 348 YIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTR-TESPSNSKLY 394 >gi|220935397|ref|YP_002514296.1| hypothetical protein Tgr7_2229 [Thioalkalivibrio sp. HL-EbGR7] gi|254764843|sp|B8GUI9|TOLB_THISH RecName: Full=Protein tolB; Flags: Precursor gi|219996707|gb|ACL73309.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 435 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 210/385 (54%), Gaps = 9/385 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++ +L RS F+ + Q Q+ T + FQ W G +V GR++ G DR Sbjct: 58 IGAIIQANLHRSGQFSPMEQGRMPQRPTRGQDV-NFQVWRGAGVDYVVIGRLVPAGADRF 116 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 V+F+L+D +Q+ G +S + R+ AH SD IYQ ITG +G FN+R+ +VS + Sbjct: 117 NVQFQLFDTVRGRQVTGYSIPASSSQLRRAAHMASDIIYQQITGVRGAFNTRVAYVSVTR 176 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G + +L V D DG N R + SR IL P +SP+ +++AY ++++ + +Y+ D Sbjct: 177 EGGEQRFALQVADADGHNPRTIFRSRQPIL-SPVWSPDGRRLAYVSFENRN-SEIYVQD- 233 Query: 245 RIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 ID A + RI +F+ + AP +S +G+R +++ +D DIY ++L + R+TN+ I Sbjct: 234 -IDGAQRERIASFQGINSAPAWSPDGRRMALTLSRDGQPDIYVMNLADRSLLRVTNSRSI 292 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + ++PD ++F SDR G Q+Y +G +R++ D + +P SP G L+A Sbjct: 293 DTEPEWTPDGRNLLFTSDRAGNPQIYEQSLSGGQPRRLTFDGRYN-GNPTLSPDGRLVAM 351 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G +F I V+ + Q RLL + +AP+++P+G +I++ G G +L ++ Sbjct: 352 VNGDGGRFRIAVLDRQTRQFRLLTDGRLDEAPSFAPNGSMIIYATAGRGGQG-ELAAVSA 410 Query: 424 NGR-NETLINTPAYASDPQWVGFMD 447 +GR ++L+ +P W F+D Sbjct: 411 DGRVRQSLVLQEGEVREPAWSPFLD 435 >gi|307823677|ref|ZP_07653905.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacter tundripaludum SV96] gi|307734971|gb|EFO05820.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacter tundripaludum SV96] Length = 427 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/431 (29%), Positives = 229/431 (53%), Gaps = 18/431 (4%) Query: 18 CLLLVLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 LL+ L+ + P+S +++ + P+S+ + VS VV DL RS Sbjct: 7 ILLIGLVSFYVPSSYAEMTIEITEGIESALPISVVPFGMQGASGVPVDVSFVVDADLGRS 66 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F + + S K + +++ +F+DW +LG LV G+VI E + V+F+L+DV Sbjct: 67 GYFKTLDKQSMPAKPSTAEAV-QFKDWQALGQNYLVIGQVI-EDHGQYNVQFQLFDVYKG 124 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q++G + SS A R+ AH ISD I++ +TG+KG F+ RI +++ S + L V Sbjct: 125 EQLMGYRMTSSAAELRRTAHHISDLIFEKLTGKKGVFSGRIAYITSSRQGKQSTSKLQVS 184 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + + S + L P +SP+ +K+AY +++ + +RA R+ F Sbjct: 185 DADGFNAQTIASSVEP-LMSPAWSPDGRKIAYVSFEKKSAAIYIQTLATGERA--RVAEF 241 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP +S +G + +++ KD + DIY ++L + + +LT + I+ ++SPD S I Sbjct: 242 PGINGAPSWSPDGAKLALTLSKDGSPDIYILNLVTRSLTKLTKSFAIDTEPTWSPDGSHI 301 Query: 317 VFESDREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 VF SDR GK QLY+M S G ++KR++ + AS+ SP G IA +G + Sbjct: 302 VFTSDRGGKPQLYIMSSQGGEEKRLTFSGNYNARASF-----SPDGKSIAMVHGNGSDYR 356 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLI 431 I VM ++ + + ++P+++P+G ++++ +K G G L ++ L+G+ + L+ Sbjct: 357 IAVMDMATKSVNVITDGRSDESPSFAPNGSMILYASRK-GSAG-YLSAVSLDGKMQQKLV 414 Query: 432 NTPAYASDPQW 442 + +P W Sbjct: 415 FDSSEIREPAW 425 >gi|163796930|ref|ZP_02190886.1| TolB protein [alpha proteobacterium BAL199] gi|159177677|gb|EDP62228.1| TolB protein [alpha proteobacterium BAL199] Length = 207 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 131/195 (67%), Gaps = 6/195 (3%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 +G+F M APRFS +G + ++S+ +D D+Y +DL++ RLTN+ I+ S S+SPD Sbjct: 9 LGDFPGMTFAPRFSPDGNQVIMSLARDGVTDVYRMDLRTRRVTRLTNSASIDTSPSFSPD 68 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +Q+ F SDR G +QLYVM SNG KRIS + Y PVWSP+GDLIAFTK +G +F Sbjct: 69 GTQVAFNSDRGGAQQLYVMDSNGGGVKRISF-GQGQYATPVWSPRGDLIAFTKIAGGQFH 127 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-----SKLYSIDLNGRN 427 IGVM+ DGS ERL+ ++AP+W+P+GR L++ +++ D+ +KL++IDL G N Sbjct: 128 IGVMRVDGSGERLISSGYLVEAPSWAPNGRVLVYFKQQRTDSAGRGGETKLFTIDLTGYN 187 Query: 428 ETLINTPAYASDPQW 442 E + TP ASDP W Sbjct: 188 EREVVTPLDASDPAW 202 >gi|78224723|ref|YP_386470.1| WD-40-like beta propeller repeat-containing protein [Geobacter metallireducens GS-15] gi|119371044|sp|Q39PS9|TOLB_GEOMG RecName: Full=Protein tolB; Flags: Precursor gi|78195978|gb|ABB33745.1| WD40-like Beta Propeller [Geobacter metallireducens GS-15] Length = 429 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 224/458 (48%), Gaps = 49/458 (10%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID- 59 M+ R FI + I LCL+ P +H+ Y V+ A T +++ Sbjct: 1 MTRRLFIL----ITIMLCLI--------PALLHS-------QEGYREVTAAGTHKLTLTV 41 Query: 60 ----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPR--------FQDWNSLG 107 LGG + V+++ + F+++ F + + F W G Sbjct: 42 DSPRRLGGSDAPQVARETAEALQFDMVLAGPFTVTAPSAAAASAGIRPGEFDFAPWRGAG 101 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 +LV G + + +EFRL++V K+I+ K++ P R+IAHT SDDI ++T Sbjct: 102 VDLLVKSGYTVTG-NAMTMEFRLYNVTQGKEILAKRYTGRPGDVRRIAHTFSDDIMAALT 160 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 GE+G F +I FVS + ++ +MD DG N++ LT +R I P FSP+ +++ Sbjct: 161 GERGPFTGKIAFVSTRAGA----KAIFLMDYDGHNVQQLTKNR-SINLNPDFSPSGKEII 215 Query: 228 YATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + +Y + D+ R L A RI ++R + +S +GK +++ KD +IY Sbjct: 216 FTSYRQGNPDLFRRELFTG----AEARISSYRGINATGAWSPDGKTIALTLSKDGNSEIY 271 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++ RLTNT I +S ++SPD +IVF SDR GK Q+++M ++G+ +R++ Sbjct: 272 TISRDGKNPHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQIFIMNADGTGVRRLTTSG 331 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P WSP+GD I +++ G F I + DG+ + L + + + P WSP GR + Sbjct: 332 NYN-VSPRWSPKGDRIVYSRQEG-GFQIYAINPDGTNDTRLTSEGSNEHPRWSPDGRFIT 389 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQW 442 FS + G G +Y + +G +T ++ S P W Sbjct: 390 FSSTRGG--GEGIYVMRADGSGQTRVSGGKGRDSHPTW 425 >gi|320354281|ref|YP_004195620.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122783|gb|ADW18329.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032] Length = 428 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 198/387 (51%), Gaps = 24/387 (6%) Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G V+++++K L+ +I + R DW SLGA +V G+V + Sbjct: 59 GAAVAQLLTKGLELHGFIGVIDSSRYGGS--------RDADWKSLGADYVVLGQVSGDPA 110 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 + VE ++ DV + G++F S A + + D + Q TGE G +RI +VS Sbjct: 111 G-IAVEGQILDVASNASLAGRRFKGSAAQLEDMTLRLCDTLIQDFTGEMGVARTRIAYVS 169 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD--DEDILRV 239 ++ + + + D G + R +T R + PRF+P+ +AY+TY ++D+ Sbjct: 170 DATG----RKEVYISDILGRHPRQVTRHR-ALCVSPRFTPDGNYLAYSTYHRGNQDL--- 221 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D R + A + + LAP FS +G+ ++++ K D+YS+D Q N +LT+ Sbjct: 222 YITDLRQNTATNALSRRNGLNLAPTFSPDGRTMVVTLSKGGNPDLYSMDRQGNIIRQLTS 281 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 IN+SASYSPD + F SDR GK +YVM + G KR++ K +PVWSP+GD Sbjct: 282 GAGINVSASYSPDGQTLAFVSDRSGKPNVYVMSAGGGQAKRLTF-KCPENSEPVWSPKGD 340 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 IAFT G + + VM ++G R L N ++PTWSP GR L +RK + S++ Sbjct: 341 EIAFTGLQGGIYQLFVMDRNGGNVRQLSTGGGNYESPTWSPDGRLLAVTRKS--GSRSEI 398 Query: 419 YSIDLNGRN-ETLINTPAYASDPQWVG 444 + +G++ +L S PQW G Sbjct: 399 CVVSKSGKDVRSLFAMKGNQSYPQWSG 425 >gi|148262286|ref|YP_001228992.1| WD40 domain-containing protein [Geobacter uraniireducens Rf4] gi|146395786|gb|ABQ24419.1| WD40 domain protein beta Propeller [Geobacter uraniireducens Rf4] Length = 427 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 122/382 (31%), Positives = 195/382 (51%), Gaps = 18/382 (4%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLV-TGRVIKEGKDR 123 +SEV S DL + F ++ + K F W + GA +LV +G + D Sbjct: 56 ISEVFSFDLTLAGPFAVMPTPPAESKSGIRPGEFDFAPWQAAGANLLVKSGYTVSA--DS 113 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 L +EFRL+DV K++ K++ A RKI HT D+I ++TGE+G F + FVS + Sbjct: 114 LTIEFRLYDVARGKELAAKRYSGKRADLRKIVHTFGDEIMLAVTGERGPFTGKTAFVSTA 173 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD--DEDILRVYL 241 + +C+MD DG N++ LT I P FSPN +++ Y +Y + D+ R L Sbjct: 174 TGN----KEICLMDYDGYNVQRLT-KNGSINLNPDFSPNGKELIYTSYKRRNPDLYRREL 228 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 R R G + + +S +G + +++ KD +IY++ +LTN Sbjct: 229 FSGTEARLSARPG----INVTGAWSPDGSKIALAMSKDGNSEIYTISKDGKQLAKLTNNS 284 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I +S ++SPD S+I F SDR GK Q+++M ++GS+ R++ + P WSP+GD I Sbjct: 285 AIEVSPAWSPDGSRIAFVSDRLGKPQVFIMNADGSNVSRLTTSGTYN-VSPRWSPKGDRI 343 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ + G F I V+ DGS + L + + + P WSP GR + FS + G +Y + Sbjct: 344 AYCRQHGGGFQIYVINADGSSDVQLTSEGSNEHPRWSPDGRFITFSSTRGGK--EAIYVM 401 Query: 422 DLNGRNETLINTPAYA-SDPQW 442 +G +T ++ A S P W Sbjct: 402 RSDGSGQTRVSRGKGADSHPAW 423 >gi|118588325|ref|ZP_01545734.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] gi|118439031|gb|EAV45663.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] Length = 189 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/190 (48%), Positives = 125/190 (65%), Gaps = 2/190 (1%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M APRFS +G+ ++S+Q+ +I+ +DL+S T RLTN I+ S S+SPD SQIVF Sbjct: 1 MTFAPRFSPDGQSVVMSLQQGGNANIFKMDLRSRQTTRLTNDAAIDTSPSFSPDGSQIVF 60 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ESDR G +QLYVM + G +RIS Y PVWSP+GDLIAFTK +F IGVM+ Sbjct: 61 ESDRGGTQQLYVMSAGGGGAQRISFGP-GRYSTPVWSPRGDLIAFTKQHQGRFMIGVMRP 119 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYA 437 DG ER+L E + + P WSP+GR L+F R G + G +++++DL G NE + TPA+A Sbjct: 120 DGKGERILTEGYHNEGPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRVETPAFA 179 Query: 438 SDPQWVGFMD 447 SDP W +D Sbjct: 180 SDPSWSPLID 189 >gi|196019748|ref|XP_002119033.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens] gi|190577229|gb|EDV18481.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens] Length = 251 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 152/255 (59%), Gaps = 7/255 (2%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIG 254 MD+DGAN ++LT S ++ + PRF Q++ + +Y ++ + +VY++D IG Sbjct: 1 MDQDGANFKFLT-SGNEFILSPRFDMKSQRITFMSYKNKKNPPKVYVLDLETGEQ-DLIG 58 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDS 313 + M AP FS + ++S+ K +IY +DL + + LTN FI+ S SYSPD Sbjct: 59 DMAGMTFAPNFSPDNNHVVMSLAKKGTTNIYEIDLNTKIKKELTNIYGFIDTSPSYSPDG 118 Query: 314 SQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +I+F SDR G+ Q+YVM +G + K+IS E SY P+WSP G IAFTK F Sbjct: 119 KKILFNSDRGGRRTQIYVMDRDGQNIKKISSG-EGSYRTPIWSPDGKWIAFTKILLGNFY 177 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IG+MK DGS ERLL + P+W+P+ R++IF R+K D +K+Y+ID++G NE +I Sbjct: 178 IGIMKPDGSDERLLTSSWLEEGPSWAPNSRTIIFGRQKR-DGSNKIYAIDIDGNNERIIY 236 Query: 433 TPAYASDPQWVGFMD 447 TP S P W ++ Sbjct: 237 TPTDGSQPSWSAHLN 251 >gi|189426516|ref|YP_001953693.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter lovleyi SZ] gi|189422775|gb|ACD97173.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter lovleyi SZ] Length = 430 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 134/425 (31%), Positives = 216/425 (50%), Gaps = 40/425 (9%) Query: 40 TNSANYSPVSIAFTKFVSI-------------DELGGKVSEVVSKDLQRSDVFNLISQDS 86 T +ANY V+ A + + + EL + +E+ + DL S + +D+ Sbjct: 21 TGAANYIEVTAAGNRLLKLAVVPPQPMGTVIRPELANETAELHAFDLTMSGLVAAERRDA 80 Query: 87 ----FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 +T D +P W S G +L+ G G++ L +EFRL+DV +K + K Sbjct: 81 APLVHGLALTPVDFVP----WLSAGYDLLIRGEYELRGQE-LTLEFRLYDVVAKKLLTSK 135 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 +F R+ AH+ SD++ +++TGEKG F S+IL+VS SG L VMD DG N Sbjct: 136 RFLGREKDLRRYAHSFSDEVLRALTGEKGAFTSKILYVSTQ--SG--NKELAVMDWDGFN 191 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + LT +R I P SP+ ++V + +Y + D+ + L R G + Sbjct: 192 SQQLTGNR-SINLSPDISPDGREVIFTSYKRGNPDLYKRALSSNLEVPVSSRSG----LN 246 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + +S +G R +++ KD +IY+V +A RLT + N+S +++PD S+I F S Sbjct: 247 ITGAWSPDGNRIALALSKDGNTEIYTVAKDGSAPNRLTVSHAANVSPAWTPDGSKIAFVS 306 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 DR GK Q++VM +NG + +R+ SY +P WSP+GD +AF + +G F I V D Sbjct: 307 DRLGKPQIFVMDANGGNVRRLI--TSGSYNVNPSWSPKGDKLAFARMAG-GFQIFVANAD 363 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYAS 438 GS E L + N + P WSP GR + FS ++ G +Y + +G +T ++ + + Sbjct: 364 GSNEIQLTFEGNNERPRWSPDGRLITFSSRRGGQ--EAIYVMRADGSGQTKVSRSKGLSQ 421 Query: 439 DPQWV 443 P W Sbjct: 422 HPVWT 426 >gi|39995136|ref|NP_951087.1| tolB protein [Geobacter sulfurreducens PCA] gi|67461990|sp|Q74H67|TOLB_GEOSL RecName: Full=Protein tolB; Flags: Precursor gi|39981898|gb|AAR33360.1| tolB protein [Geobacter sulfurreducens PCA] gi|298504166|gb|ADI82889.1| TolB-related biopolymer transport periplasmic beta-propeller repeat protein [Geobacter sulfurreducens KN400] Length = 432 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/445 (28%), Positives = 222/445 (49%), Gaps = 33/445 (7%) Query: 12 NMKINLCLLLVLIGGFFPTSIHA---FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 +++I LL +L+ P IH+ + +V + A+ +++ + LGG Sbjct: 3 HVRIFATLLALLVISVTPAVIHSEDVYREVTASGAHNLTLAVDNPR-----NLGGADDAA 57 Query: 69 VSKDLQRSDVFNLISQDSFK----QKITNPDSIPR----FQDWNSLGAQVLVTGRVIKEG 120 +++D+ F++ F T+P I W + G +LV G Sbjct: 58 LARDVAEVLRFDMTLAGPFSVMAPPAGTSPGGIRPGEFDLDSWRNAGVDLLVKSGYTITG 117 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 D + +EFRL++ +++ K++ + R+I HT SDDI Q++TGE+G F +I FV Sbjct: 118 -DSVTMEFRLYNATQGRELAAKRYTGKRSDLRRITHTFSDDIMQTMTGERGPFTGKIAFV 176 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDILR 238 S SG + +MD DG N++ LT +R I P FSPN +++AY +Y + D+ R Sbjct: 177 STE--SG--NKEIYLMDYDGHNVQRLTKNR-SINLNPDFSPNGRELAYTSYRRGNPDLFR 231 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + + R + + +S +GK+ +++ +D +IY++ RLT Sbjct: 232 REIFTG----TEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDPRRLT 287 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I++S ++SPD +I F SDR GK Q+++M ++GSD +R++ A P WSP+G Sbjct: 288 THQAIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGSDVRRLTTSG-AYNVSPRWSPKG 346 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 D + + + G F I + DG+ + L + + + P WSP GR L FS +DG G + Sbjct: 347 DRLVYCRQEG-GFQIYSIATDGTGDTRLTSEGSNEHPRWSPDGRFLTFSSTRDG--GEAI 403 Query: 419 YSIDLNGRNETLI-NTPAYASDPQW 442 Y + +G +T + + AS P W Sbjct: 404 YVMRSDGSGQTRVYRSKGKASHPTW 428 >gi|77163683|ref|YP_342208.1| hypothetical protein Noc_0145 [Nitrosococcus oceani ATCC 19707] gi|119371047|sp|Q3JER8|TOLB_NITOC RecName: Full=Protein tolB; Flags: Precursor gi|76881997|gb|ABA56678.1| TolB [Nitrosococcus oceani ATCC 19707] Length = 434 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 123/429 (28%), Positives = 220/429 (51%), Gaps = 13/429 (3%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQR 75 L LL+ L+ S+ A + + + + IA F + + V+ V++ DL R Sbjct: 14 LALLVWLVSS---PSVFAVLTIEITGGTEAALPIAIVPFQNEGSTPPENVAAVIAADLAR 70 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + ++ + N I +FQDW LG++ LV G+VI G DR V F+L+D+ Sbjct: 71 SGRFAPLPEEDLISRPRNASDI-QFQDWRRLGSEGLVIGKVISLGADRYEVRFQLFDIYK 129 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKNSLC 194 +Q++G+++ A R +AH I+D IY+++TGEKG F + I FV+ S G + SL Sbjct: 130 EEQLVGRRYQVPAAGLRHLAHQIADLIYETLTGEKGIFTTHIAFVTVSRAAHGAKQYSLQ 189 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG N + S++ IL P +SP+ ++AY +++ V++ + R + + + Sbjct: 190 VADVDGHNPHTILRSKEPIL-SPAWSPDGTQLAYVSFERRRS-EVFVQELRTGQR-QSVA 246 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + AP +S +G + + + K+ +IY DL + RLT+ I+ +++PD Sbjct: 247 SFSGINSAPDWSPDGGKLALVLSKEGNPEIYIRDLATGRLTRLTHNTAIDTEPAWAPDGG 306 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 IVF SDR G+ QLY + +G +R++ D A ++P G +A +F I Sbjct: 307 SIVFTSDRGGRPQLYQIPVSGGRAQRLTFDG-AYNASASFAPDGRRLALIHGDKGQFHIA 365 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINT 433 V+ + ++L E ++P+++P+GR ++++ G L ++ +GR + L Sbjct: 366 VLNLQSKELQVLTETRMDESPSFAPNGRMILYA--TSSPQGGVLAAVSTDGRVRQRLAQQ 423 Query: 434 PAYASDPQW 442 +P W Sbjct: 424 GDEVREPAW 432 >gi|254435418|ref|ZP_05048925.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus oceani AFC27] gi|207088529|gb|EDZ65801.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus oceani AFC27] Length = 422 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 123/429 (28%), Positives = 220/429 (51%), Gaps = 13/429 (3%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQR 75 L LL+ L+ S+ A + + + + IA F + + V+ V++ DL R Sbjct: 2 LALLVWLVSS---PSVFAVLTIEITGGTEAALPIAIVPFQNEGSTPPENVAAVIAADLAR 58 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + ++ + N I +FQDW LG++ LV G+VI G DR V F+L+D+ Sbjct: 59 SGRFAPLPEEDLISRPRNASDI-QFQDWRRLGSEGLVIGKVISLGADRYEVRFQLFDIYK 117 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKNSLC 194 +Q++G+++ A R +AH I+D IY+++TGEKG F + I FV+ S G + SL Sbjct: 118 EEQLVGRRYQVPAAGLRHLAHQIADLIYETLTGEKGIFTTHIAFVTVSRAAHGAKQYSLQ 177 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG N + S++ IL P +SP+ ++AY +++ V++ + R + + + Sbjct: 178 VADVDGHNPHTILRSKEPIL-SPAWSPDGTQLAYVSFERRRS-EVFVQELRTGQR-QSVA 234 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + AP +S +G + + + K+ +IY DL + RLT+ I+ +++PD Sbjct: 235 SFSGINSAPDWSPDGGKLALVLSKEGNPEIYIRDLATGRLTRLTHNTAIDTEPAWAPDGG 294 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 IVF SDR G+ QLY + +G +R++ D A ++P G +A +F I Sbjct: 295 SIVFTSDRGGRPQLYQIPVSGGRAQRLTFDG-AYNASASFAPDGRRLALIHGDKGQFHIA 353 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINT 433 V+ + ++L E ++P+++P+GR ++++ G L ++ +GR + L Sbjct: 354 VLNLQSKELQVLTETRMDESPSFAPNGRMILYA--TSSPQGGVLAAVSTDGRVRQRLAQQ 411 Query: 434 PAYASDPQW 442 +P W Sbjct: 412 GDEVREPAW 420 >gi|118588326|ref|ZP_01545735.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] gi|118439032|gb|EAV45664.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] Length = 260 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVVSKDLQRSDVFNLISQD 85 P A V++ N P+ IA F + +L ++ V++ DL+RS +F + Sbjct: 31 PLPAAALVEIDITQGNIEPLPIALPSFSAEGGDGKLAADMTNVIAADLKRSGLFRPLDPA 90 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 SF QK + +S PRF DW + AQ LVTG V K+ RLR EFRLWDV +Q++G++F+ Sbjct: 91 SFIQKNMSVNSTPRFGDWRQISAQALVTGTVTKQPDGRLRAEFRLWDVFAAEQMLGQQFY 150 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 ++P +WR++AH I+D IY+ +TGEKG F++RI+FV E+ L +MD+DGAN+RY Sbjct: 151 TTPDNWRRLAHIIADAIYERLTGEKGYFDTRIVFVDETGPKDKRVKRLAIMDQDGANVRY 210 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 LT D ++ PRFSP Q++ Y +Y D VYL++ D A Sbjct: 211 LTRG-DDLVLTPRFSPTSQEITYMSYGGTDP-SVYLLNIETDSA 252 >gi|74318224|ref|YP_315964.1| translocation protein TolB [Thiobacillus denitrificans ATCC 25259] gi|119371065|sp|Q3SGT4|TOLB_THIDA RecName: Full=Protein tolB; Flags: Precursor gi|74057719|gb|AAZ98159.1| probable tolB-related transport protein [Thiobacillus denitrificans ATCC 25259] Length = 427 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 117/433 (27%), Positives = 218/433 (50%), Gaps = 16/433 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF-VSIDELGGKVSEVVSK 71 ++ L L+ +G + HA +++ + ++IA F + + ++++V+ Sbjct: 6 LRALLVFSLLCLGLSATRAAHAAMEIEVVGGAANKIAIAMVPFQTAAGQPSPPLTQIVAD 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F++ Q + P + + W + GA+ +V G+V+ G R V FRL Sbjct: 66 DLARSGQFSMTDVTGAAQPV-EPSQV-DYAAWRTKGAEAMVIGQVVALGGGRFEVRFRLL 123 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV Q+ G + + A WR H I+D +Y+ +TG G F+SRI +V + + Sbjct: 124 DVVKGTQLAGYSYKITAAQWRATGHRIADVVYEKLTGIPGAFSSRIAYVQKQGK----RY 179 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D DG N R + S + L P FSP+ ++AY +++D+ + VY+ + + Sbjct: 180 ELRVADADGQNPRTIVRSLEP-LISPMFSPDGTRLAYVSFEDKKPV-VYVQSLQ-QGGRR 236 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 ++ F+ AP +S +G++ + + +D A IY +++ + RL + I+ +SP Sbjct: 237 KVAAFKGSNSAPAWSPDGRQLAVVLTRDGASQIYLINVDGSGLTRLMRSGDIDTEPVFSP 296 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEK 370 D + F SDR G Q+Y + +G D KR+S E SY P SP G +A+ G + Sbjct: 297 DGQTLYFTSDRGGSPQIYRVAKSGGDAKRVS--FEGSYNVSPTISPDGRYLAYISRDGGR 354 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F + + + Q R+L E + +AP+++P+G++++++ + G L ++ L+G+ Sbjct: 355 FRVVLQELASGQTRVLTETTRDEAPSFAPNGQAVLYATVQGGR--GVLGTVTLDGKTRAR 412 Query: 431 INTPAY-ASDPQW 442 ++ A +P W Sbjct: 413 LSESGVDAREPAW 425 >gi|297539676|ref|YP_003675445.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylotenera sp. 301] gi|297259023|gb|ADI30868.1| Tol-Pal system beta propeller repeat protein TolB [Methylotenera sp. 301] Length = 439 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 117/428 (27%), Positives = 218/428 (50%), Gaps = 16/428 (3%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKV 65 F+ + + +NL + + F P+ +A +++ + V IA F + Sbjct: 11 FLRLQFSTILNLAIFSASL--FIPSLANAALEIEISGGGAQQVPIAIVPFEQSGNSADNI 68 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S +++ DL+RS +F ++ K T+ I ++ +W +L AQ + G V +RL+ Sbjct: 69 SSIIAADLKRSGLFRVLETGGVVNKPTDITQI-KYSEWANLQAQAMAVGVVETLPNNRLK 127 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V F+L DV + Q+ G ++ +P R AH I+D IYQ +TGE G F SRI +++++ Sbjct: 128 VTFQLADVLKQSQLTGMQYTIAPNQLRTTAHKIADVIYQKLTGESGIFASRIAYITKAND 187 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 ++K V D DGAN + S++ I+ P +SP K+AY +++ + + +Y+ Sbjct: 188 RYMLK----VADADGANPLTMVSSKEPII-SPAWSPEGNKIAYVSFEKKKPI-IYVQTLS 241 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R + F+ AP +S +G + I + +Y+++ + R+T I+ Sbjct: 242 GQRT--VLAGFKGNNSAPAWSPDGSKLAIVLTYGANSQVYTINADGSGLSRITKGNAIDT 299 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFT 364 ++S D+ I F SDR GK Q+Y + +NG D +R++ E +Y P +SP G +A Sbjct: 300 EPTWSSDAKWIYFTSDRGGKPQIYKVSANGGDPQRVT--FEGAYNVSPRFSPDGKSLAMI 357 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + G KF + + Q +LL E S ++P+++P+GR ++++ + G L ++ + Sbjct: 358 RNDGGKFRVALQDLTTGQVQLLSEGSQDESPSFAPNGRVILYATRSSGH--GALAAVSAD 415 Query: 425 GRNETLIN 432 GR + +N Sbjct: 416 GRVKQRLN 423 >gi|198282216|ref|YP_002218537.1| Tol-Pal system beta propeller repeat-containing protein TolB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665098|ref|YP_002424581.1| tol-pal system beta propeller repeat protein TolB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246737|gb|ACH82330.1| Tol-Pal system beta propeller repeat protein TolB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517311|gb|ACK77897.1| tol-pal system beta propeller repeat protein TolB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 422 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/429 (28%), Positives = 211/429 (49%), Gaps = 19/429 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSI-AFTKFVSIDELGGKVSEVVSKDLQR 75 L + L+ P V++ N A+ P++I +F ++ V+EVV DL+ Sbjct: 8 LAIFLLAWAFVLPAQAALTVEITKNVASALPIAIPSFGPGIAGQP---SVAEVVRNDLRH 64 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F +I + P + + DW ++GA L G V + V +++V Sbjct: 65 SGLFRVIDPAGYPADPRAPGGV-KAADWTAVGATGLAVGSV-EPRNGGYAVNVYVYNVST 122 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 +++ +F S A AH ++D IYQ+ TG+ G F SRI +V ++ + L V Sbjct: 123 GQELTAHRFTCSAAELHMTAHHVADVIYQAFTGKPGPFASRIAYVRQTGAN----YELLV 178 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + DG N + R + F P +SP+ +++AY TY + + +Y+ D + + I Sbjct: 179 AESDGWNPHPIVRGRMPV-FSPVWSPDNRRLAYVTYANARAV-IYVQDLATGQR-QSIAP 235 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 ++ AP FS NG + ++Y +LQ+ +LT+ IN S ++SPD S+ Sbjct: 236 GGEIVSAPAFSPNGTELAYARSSGGHTELYVANLQTGQRRQLTHDDAINTSPTWSPDGSR 295 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIG 374 I+F SDR G Q+Y M ++G R+S D SY PV+SP G+ IAF + +A+ Sbjct: 296 IIFVSDRAGGPQIYAMNASGGAAHRLSYD--GSYNASPVYSPAGNAIAFIHRTNGVYALA 353 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM DGS R+L N P+++ +G+ +++ ++ G L + L+G+ ++++ Sbjct: 354 VMNPDGSGVRVLDAQGNCDHPSFAGNGQMILYGTQRGGR--KVLAEVSLDGKTMAILHSN 411 Query: 435 AYA-SDPQW 442 A S P W Sbjct: 412 AGEDSQPAW 420 >gi|118574585|sp|Q1GYT1|TOLB_METFK RecName: Full=Protein tolB; Flags: Precursor Length = 433 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 120/422 (28%), Positives = 214/422 (50%), Gaps = 17/422 (4%) Query: 26 GFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDLQRSDVFNLI 82 G + H + V + IA F + G+ ++ V+ DL+RS +F ++ Sbjct: 18 GMATGAAHGALTVEIVGGAAQQIPIAVVPFAQQGVIPGQQDTIANVIGADLRRSGLFRVL 77 Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + ++ + +QDW ++ AQ L G + +RL+V FRL DV + Q++G Sbjct: 78 ETRGVANQPSDISQV-NYQDWAAIQAQALTIGNIETLPGNRLKVSFRLLDVYKQSQLVGM 136 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 ++ +P+ R AH I+D IYQ +TGE+G F +RI +VS+S G + +L V D DG N Sbjct: 137 EYNITPSQLRLTAHKIADVIYQKLTGEQGVFATRIAYVSKS--GG--RYALQVADSDGYN 192 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + S + I+ P +SP+ K+AY +++ + + +Y+ + + + NF+ A Sbjct: 193 PQTVVSSAEPII-SPVWSPDGTKLAYVSFEKKKPI-IYV-QSLVSGQRTVLANFKGNNSA 249 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +GKR I + IYS++ ++LT T I+ ++SPD I F SDR Sbjct: 250 PAWSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGRYIYFTSDR 309 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 G Q+Y M S+G + R++ E SY P SP G +A+ + G +F + + Sbjct: 310 GGSPQIYRMPSSGGEASRMT--FEGSYVVSPRLSPDGKSLAYIRRDGGQFRVALQDLQTG 367 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDP 440 Q ++L + ++P+++P+GR L+ + + G L ++ +GR + L + +P Sbjct: 368 QVQVLSDGPKDESPSFAPNGRMLLHATRVGGR--GALAAVSADGRVKQRLSESGGDVREP 425 Query: 441 QW 442 W Sbjct: 426 AW 427 >gi|91776691|ref|YP_546447.1| TolB-like protein [Methylobacillus flagellatus KT] gi|91710678|gb|ABE50606.1| TolB-like protein [Methylobacillus flagellatus KT] Length = 415 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/417 (28%), Positives = 213/417 (51%), Gaps = 17/417 (4%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDLQRSDVFNLISQDSF 87 + H + V + IA F + G+ ++ V+ DL+RS +F ++ Sbjct: 5 AAHGALTVEIVGGAAQQIPIAVVPFAQQGVIPGQQDTIANVIGADLRRSGLFRVLETRGV 64 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 + ++ + +QDW ++ AQ L G + +RL+V FRL DV + Q++G ++ + Sbjct: 65 ANQPSDISQV-NYQDWAAIQAQALTIGNIETLPGNRLKVSFRLLDVYKQSQLVGMEYNIT 123 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P+ R AH I+D IYQ +TGE+G F +RI +VS+S G + +L V D DG N + + Sbjct: 124 PSQLRLTAHKIADVIYQKLTGEQGVFATRIAYVSKS--GG--RYALQVADSDGYNPQTVV 179 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S + I+ P +SP+ K+AY +++ + + +Y+ + + + NF+ AP +S Sbjct: 180 SSAEPII-SPVWSPDGTKLAYVSFEKKKPI-IYV-QSLVSGQRTVLANFKGNNSAPAWSP 236 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +GKR I + IYS++ ++LT T I+ ++SPD I F SDR G Q Sbjct: 237 DGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGRYIYFTSDRGGSPQ 296 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +Y M S+G + R++ E SY P SP G +A+ + G +F + + Q ++L Sbjct: 297 IYRMPSSGGEASRMT--FEGSYVVSPRLSPDGKSLAYIRRDGGQFRVALQDLQTGQVQVL 354 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 + ++P+++P+GR L+ + + G L ++ +GR + L + +P W Sbjct: 355 SDGPKDESPSFAPNGRMLLHATRVGGR--GALAAVSADGRVKQRLSESGGDVREPAW 409 >gi|118581723|ref|YP_902973.1| WD40 domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504433|gb|ABL00916.1| WD-40 repeat-containing protein [Pelobacter propionicus DSM 2379] Length = 435 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 108/346 (31%), Positives = 188/346 (54%), Gaps = 16/346 (4%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS 159 F W G +LV G +G D L VEFRL+D+ +RK + +++ R+ AH+ + Sbjct: 100 FNSWLKGGYDLLVRGEYSVKGDD-LTVEFRLFDLANRKMMTARRYLGKTKDLRRFAHSFA 158 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D+I ++TGE+G F + I FVS SG + +MD DG + R LT + I P F Sbjct: 159 DEILLAMTGERGCFTTHIAFVS--TRSG--NKEIAIMDWDGHDTRQLTRNH-SINLNPDF 213 Query: 220 SPNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN +++ + +Y + D+ R L + ++ A + + + + +S +G R +++ Sbjct: 214 SPNGREIIFTSYKRHNPDLYRRPL-SSPVEVA---VSHREGLNITGAWSPDGSRIALALS 269 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 KD +IY++ ++ RLT+ I IS ++SP+ SQI F SDR GK Q+++M ++G+ Sbjct: 270 KDGNSEIYTIARDGSSPVRLTSHPAIEISPTWSPNGSQIAFVSDRLGKPQIFIMNADGTG 329 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +R++ + +P WSP+GD IA+ + G F I + +GS + L + + P W Sbjct: 330 VRRLTTNG-GYNVNPRWSPKGDKIAYARMEGGGFQIHTINVNGSDDTQLTSSGSSENPAW 388 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQW 442 SP GR + FS ++ +G ++Y + +G ET ++ ++ P W Sbjct: 389 SPDGRLIAFSGRR--GSGDEIYVMRADGSGETRVSKVGGRSTQPAW 432 >gi|114319404|ref|YP_741087.1| TolB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|122941253|sp|Q0AC40|TOLB_ALHEH RecName: Full=Protein tolB; Flags: Precursor gi|114225798|gb|ABI55597.1| TolB, N-terminal domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 428 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 121/430 (28%), Positives = 210/430 (48%), Gaps = 11/430 (2%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVS-IAFTKFVSIDELGGKVSEVVSKDLQ 74 +C L +L+ G + V PV+ I F I ++ V+S +L Sbjct: 7 TVCTLALLLVGLQAAHADDIIDVIGGQEGAMPVAVIPFAVTGEIPTPDQDIARVISDNLA 66 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS F ++ ++ + D RF W +LG LVTGR+ +G R+ V F L DV Sbjct: 67 RSGRFEVLPREELVARPAGLDDT-RFSAWRALGMDYLVTGRMEMDGH-RVSVTFELLDVF 124 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +I G+++ P + R +AH ISD +++ + G G F ++I +V + + L Sbjct: 125 RGNRIEGRRYRLHPDNLRSLAHAISDIVFEEVVGLPGVFGTQIAYVQVEERNDQRIHRLM 184 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG R + SR Q + P +SP + ++AY +++ +Y+ + R + RI Sbjct: 185 VADADGQRPREILESR-QPIMSPAWSPERDRLAYVSFEGGRS-EIYVQNLRSGQR-DRIA 241 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +FR + AP +S +G+ +++ +D +IY + L RLT+ I+ ++SPD Sbjct: 242 SFRGINSAPAWSPDGRHLAVTLSRDGRANIYLLRLDDGHVRRLTDHWAIDTEPTFSPDGE 301 Query: 315 QIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +I F SDR G+ Q+Y + NG +R++ D + + P WSP G IA F I Sbjct: 302 RIAFTSDRGGRPQVYTLAVNGPGGVERVTFDGDYNA-RPNWSPDGRRIAMVHRHNGSFRI 360 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLIN 432 V + + R+L + ++P ++P+G +++S GD S+L ++ ++GR N+ L Sbjct: 361 AVHDLESDRTRVLTDGPWDESPVFAPNGDMIMYSAGGSGD--SRLRTVSVHGRANQALPR 418 Query: 433 TPAYASDPQW 442 +P W Sbjct: 419 AGGLTREPAW 428 >gi|300112858|ref|YP_003759433.1| Tol-Pal system beta propeller repeat-containing protein TolB [Nitrosococcus watsonii C-113] gi|299538795|gb|ADJ27112.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus watsonii C-113] Length = 428 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 118/434 (27%), Positives = 223/434 (51%), Gaps = 12/434 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSK 71 MK+ +L + + ++ A + + + + IA F ++ + V+ V++ Sbjct: 1 MKVCFKILWLWMLMVAAQNVSAVLTIEITGGTEAALPIAIVPFQKEGKVPPEDVAAVIAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + ++ + I +FQDW LG++ LV G+V G DR V F+L+ Sbjct: 61 DLARSGRFAPLPEEDLIARPHAASDI-QFQDWRRLGSEGLVIGKVSALGADRYEVSFQLF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIK 190 D+ +Q++G+++ A R +AH I+D IY+++TGEKG F + I FV+ S G + Sbjct: 120 DIYKAEQLVGRRYQVPAAGLRHLAHQIADLIYETLTGEKGFFTTHIAFVTVSRAAHGAKQ 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V D DG N + S++ IL P +SP+ ++AY +++ V++ + R + Sbjct: 180 YALQVADVDGHNPHTILRSKEPIL-SPAWSPDGTQIAYVSFERRRS-EVFVQELRTGQR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + +F + AP +S +G++ + + K+ +IY DL ++ RLT+ I+ ++ Sbjct: 237 QSVASFPGINSAPAWSPDGRKLALVLSKEGNPEIYIRDLATDRLTRLTHNTAIDTEPVWA 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGE 369 PD IVF SDR G+ QLY + +G +R++ E +Y ++P G +A Sbjct: 297 PDGKSIVFTSDRGGQPQLYQVPVSGGQAQRLT--FEGAYNASASFAPNGRRLALIHGDKG 354 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 +F I V+ + ++L + ++P+++P+GR ++++ G G L ++ +GR + Sbjct: 355 QFHIAVLNLQSKELQVLTQTRMDESPSFAPNGRMILYA--TSGPQGGVLAAVSTDGRVRQ 412 Query: 429 TLINTPAYASDPQW 442 L +P W Sbjct: 413 RLAQQGDEVREPAW 426 >gi|257095752|ref|YP_003169393.1| translocation protein TolB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048276|gb|ACV37464.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 430 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 124/420 (29%), Positives = 210/420 (50%), Gaps = 33/420 (7%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGK------VSEVVSKDLQRSDVFNLISQDSFKQ 89 +++ AN PV+IA E GG+ V+ VV DL+RS +F +I D+ Sbjct: 32 IEITGAGANRIPVAIA--------EFGGEASAARIVTSVVRADLERSGLFKMI--DTSGA 81 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 +T S P + +W S GA L G + + R FRL+DV + G F +S Sbjct: 82 AMTEA-STPAYDEWKSRGADALAAGSIGEGADGRKEARFRLYDVNKAGVLGGSAFVTSKP 140 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R H I+D IY+ +TGE G F++R+ +V + S + L + D DG N + S Sbjct: 141 MLRATGHRIADIIYEKLTGEPGIFSTRVAYVVRASAS---RYELHIADADGQNAQVALIS 197 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSS 267 ++ I+ P +SP+ ++AY +++++ + VY+ + KRI NF+ AP +S Sbjct: 198 KEPII-SPSWSPDGGRLAYVSFENKKPI-VYVHSLA---SGKRIVAANFKGSNSAPAWSP 252 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G++ + + KD I++V+ + +RLT IN ++SPD + F SDR G Q Sbjct: 253 DGRKLAVVLSKDGGSQIFTVNADGSGVQRLTTASAINTEPNFSPDGQYVYFTSDRGGSPQ 312 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +Y + G D +R+S E SY P SP G +AF F + VM Q ++L Sbjct: 313 IYRVGVGGGDAQRVS--FEGSYNVTPRLSPDGKSMAFISRRDGSFRLSVMDLASKQVQVL 370 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGF 445 + ++P++SP+GR ++ + ++ G L ++ ++GR + ++ A +P W F Sbjct: 371 TDSHKDESPSFSPNGRMILIATEQGGR--GVLSAVSIDGRIKQRLSISAGDVREPAWSPF 428 >gi|292490341|ref|YP_003525780.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus halophilus Nc4] gi|291578936|gb|ADE13393.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus halophilus Nc4] Length = 430 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 129/445 (28%), Positives = 223/445 (50%), Gaps = 30/445 (6%) Query: 11 LNMKI--NLCLLLVLIGGFFPT-SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 + MK+ + L +L+ PT ++ A + + + + IA F S GG E Sbjct: 1 MGMKVWSKILWLWILL---VPTQNVSAVLTIEITGGTEAALPIAIVPFGS---QGGIPPE 54 Query: 68 ----VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 VV+ DL RS F + + + I F DW LG++ LV G V G DR Sbjct: 55 DVAAVVAADLARSGRFAPLPEKDLLSRPHRASEI-EFHDWRRLGSEGLVIGEVTHLGADR 113 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V F+L+D+ +Q++G+++ R +AH I+D IY+++TGEKG F +RI FV+ S Sbjct: 114 YGVRFQLFDIYKAEQLVGRRYQVPATGLRHLAHQIADLIYETLTGEKGAFTTRIAFVTVS 173 Query: 184 -VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V G + SL V D DG N + S++ I+ P +SP+ K+AY +++ + V + Sbjct: 174 KAVDGAKEYSLQVADVDGHNPHTILQSKEPIM-SPVWSPDGTKLAYVSFERKRS-EVIVQ 231 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + R R + + +F + AP +S +G++ + + K+ +IY +DL + RLT Sbjct: 232 ELRTGRR-QSVASFPGINSAPDWSPDGRKLALVLSKEGNPEIYILDLATRRLTRLTRNAS 290 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQG 358 I+ +++PD IVF SDR G+ QLY + ++G +R++ D AS+ +P G Sbjct: 291 IDTEPTWAPDGRSIVFTSDRGGRPQLYQISASGGQAQRLTFDGTYNASASF-----APDG 345 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A +F I V+ ++L E ++P+++P+GR ++++ G G L Sbjct: 346 QRLALVHGDKGQFHIAVLDLASKDLQVLTETRMDESPSFAPNGRMILYA--TSGPQGGAL 403 Query: 419 YSIDLNGR-NETLINTPAYASDPQW 442 ++ +GR + L +P W Sbjct: 404 AAVSTDGRVRQRLAQKGDEVREPAW 428 >gi|313202059|ref|YP_004040717.1| tol-pal system beta propeller repeat-containing protein tolb [Methylovorus sp. MP688] gi|312441375|gb|ADQ85481.1| Tol-Pal system beta propeller repeat protein TolB [Methylovorus sp. MP688] Length = 412 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/398 (27%), Positives = 199/398 (50%), Gaps = 16/398 (4%) Query: 48 VSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP--RFQDWNS 105 + IA F ++ VV DL+RS +F ++ + + P +P ++ +W + Sbjct: 23 IPIAVVPFAKTPGAQDDIATVVGADLRRSGLFRVLET---RGVVNQPHDLPEVKYPEWAA 79 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 + AQ L G V RL+V FRL DV + Q+ G +F + + R AH I+D IY+ Sbjct: 80 IQAQALTIGSVETLPGGRLKVSFRLLDVLKQNQLAGLEFNIAASQQRATAHKIADIIYEK 139 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TGE G F++RI +++++ + +L V D DG N + + S + ++ PR+SP+ K Sbjct: 140 LTGEPGVFSTRIAYITKTAG----RYALQVADADGFNPQTVMSSNEPVI-SPRWSPDGTK 194 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AY +Y+ + + + + + + NF+ AP +S +G R I + +Y Sbjct: 195 LAYVSYEKKK--PIVFVQSLVTGQRNVVANFKGNNSAPAWSPDGNRLAIVLTHSANSQVY 252 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++ ++LT T I+ ++PD S I F S+R G Q+Y M S G D KR++ D Sbjct: 253 VINADGTGLKQLTYTTSIDTEPVWTPDGSAIYFTSNRGGGPQIYRMASTGGDAKRVTFDG 312 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P SP G +A+ K KF + V Q ++L + + ++P+++P+GR ++ Sbjct: 313 NYN-VSPRISPDGKTLAYIKQDNGKFRVAVQDVASGQVQVLSDTAQDESPSFAPNGRMIL 371 Query: 406 FSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++ G L ++ +GR + L T +P W Sbjct: 372 YATSISGR--GALAAVSADGRVKQRLSETGGDVREPAW 407 >gi|254000100|ref|YP_003052163.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylovorus sp. SIP3-4] gi|253986779|gb|ACT51636.1| Tol-Pal system beta propeller repeat protein TolB [Methylovorus sp. SIP3-4] Length = 424 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/398 (27%), Positives = 198/398 (49%), Gaps = 16/398 (4%) Query: 48 VSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP--RFQDWNS 105 + IA F ++ VV DL+RS +F ++ + + P +P ++ +W + Sbjct: 35 IPIAVVPFAKTPGAQDDIATVVGADLRRSGLFRVLET---RGVVNQPHDLPEVKYPEWAA 91 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 + AQ L G V RL+V FRL DV + Q+ G +F + + R AH I+D IY+ Sbjct: 92 IQAQALTIGSVETLPGGRLKVSFRLLDVLKQNQLAGLEFNIAASQQRATAHKIADIIYEK 151 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TGE G F++RI +++++ + +L V D DG N + + S + ++ PR+SP+ K Sbjct: 152 LTGEPGVFSTRIAYITKTAG----RYALQVADADGFNPQTVMSSNEPVI-SPRWSPDGTK 206 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AY +Y+ + + + + + + NF+ AP +S +G R I + +Y Sbjct: 207 LAYVSYEKKK--PIVFVQSLVTGQRNVVANFKGNNSAPAWSPDGNRLAIVLTHSANSQVY 264 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++ ++LT T I+ ++PD S I F S R G Q+Y M S G D KR++ D Sbjct: 265 VINADGTGLKQLTYTTSIDTEPVWTPDGSAIYFTSSRGGGPQIYRMASTGGDAKRVTFDG 324 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P SP G +A+ K KF + V Q ++L + + ++P+++P+GR ++ Sbjct: 325 NYN-VSPRISPDGKTLAYIKQDNGKFRVAVQDVASGQVQVLSDTAQDESPSFAPNGRMIL 383 Query: 406 FSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++ G L ++ +GR + L T +P W Sbjct: 384 YATSISGR--GALAAVSADGRVKQRLSETGGDVREPAW 419 >gi|77920565|ref|YP_358380.1| TolB protein [Pelobacter carbinolicus DSM 2380] gi|119371048|sp|Q3A097|TOLB_PELCD RecName: Full=Protein tolB; Flags: Precursor gi|77546648|gb|ABA90210.1| TolB protein [Pelobacter carbinolicus DSM 2380] Length = 443 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 120/425 (28%), Positives = 208/425 (48%), Gaps = 25/425 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-----ELGGKVS 66 M+ + LL+ L+ T++ A V++ + +++A T+ V + + ++ Sbjct: 13 TMRRFVTLLIALLC-LSATAVQAQVEI--RAPGQQTIAVANTQLVPLSGTPLPAIAAELH 69 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNP---DSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 +V++ DL+ S +F + +F P S F W LGA++L+ G +G +R Sbjct: 70 DVMAADLELSGLFRQLDPAAFLDDARRPGLTSSRVDFNQWALLGAEILIKGGYQLQG-ER 128 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 L V+FRL+DV R+ + G+++ R +AH +D + +S+TG +G F+SRI ++ Sbjct: 129 LLVDFRLYDVVHRRLLTGRRYAGLRRDVRTMAHKFADQVLKSVTGREGPFSSRIAYIDNR 188 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDILRVYL 241 L +MD DGAN LT R I+ P FSPN ++V Y +Y + D+ R L Sbjct: 189 TG----HKELYLMDTDGANALRLTDHR-SIVLNPDFSPNGREVIYTSYRRGNPDLYRKQL 243 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + R+ + + +A RF +G+ ++ ++ + + RLT+ Sbjct: 244 STGQ----EARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHW 299 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I++ S+SP ++ F SDR+G ++VM G R++ + + + P WSP G I Sbjct: 300 GIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYNA-TPAWSPDGKRI 358 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 AFT+ F I ++ DG+ ER L N + P WSP R L++S +DG G + Sbjct: 359 AFTRLEKGVFDIYTVRPDGTDERRLTFGPGNKEHPRWSPDSRFLVYSSDQDGRKGIYIMR 418 Query: 421 IDLNG 425 D G Sbjct: 419 ADGTG 423 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 4/165 (2%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++ DG+ R LT S I +P +SP ++A+ + D + +++MD + + Sbjct: 282 LMLLGTDGSRRRRLT-SHWGIDVDPSWSPAGDRLAFVS-DRQGNPHIFVMDLLGGQTARL 339 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 N + P +S +GKR + + DIY+V RLT +SPD Sbjct: 340 TANGKYNA-TPAWSPDGKRIAFTRLEKGVFDIYTVRPDGTDERRLTFGPGNKEHPRWSPD 398 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 S +V+ SD++G++ +Y+M+++G+ +RIS P WS Q Sbjct: 399 SRFLVYSSDQDGRKGIYIMRADGTGIRRISAGGGQCQH-PAWSGQ 442 >gi|222054198|ref|YP_002536560.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. FRC-32] gi|221563487|gb|ACM19459.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. FRC-32] Length = 425 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 119/399 (29%), Positives = 199/399 (49%), Gaps = 20/399 (5%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 PV ++ T +D+ ++++ + DL + F ++ + + W + Sbjct: 40 PVPLSGTHNAELDK---TITDIFAFDLTLAGQFTVMPSPPGETRTGIRSGEFDLAPWQAA 96 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 GA +LV I G + +EFR +DV K+++ K+F RKI H S++I + Sbjct: 97 GANLLVKSGYIDNGAT-ITMEFRFFDVSRGKELVVKRFTGKRTDQRKIVHMFSNEILSAT 155 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 TGE G F + FVS SG + +MD DG N++ LT I P FSP+ +++ Sbjct: 156 TGETGPFTGKTAFVS--TASG--NKEIYLMDYDGYNVQRLT-KNGSINLNPDFSPSGKEL 210 Query: 227 AYATYD--DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 Y +Y + D+ R L+ A RI + + + +S +G R +++ KD +I Sbjct: 211 IYTSYKRRNPDLYRRELLTG----AEARISSHPGINVTGAWSPDGTRIALAMSKDGNSEI 266 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y++ RLT I++S ++SPD S+I F SDR GK Q++VM ++GS R++ Sbjct: 267 YTISKDGKQVVRLTKNEAIDVSPAWSPDGSRIAFVSDRLGKPQIFVMNADGSHVTRLTTS 326 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + P WSP+G+ IA+ + G F I V+ DGS + L D + + P WSP GR + Sbjct: 327 GTYN-VSPRWSPKGNTIAYCRQEG-GFQIHVINVDGSNDIKLTSDGSNEHPRWSPDGRFI 384 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQW 442 +FS + G G +Y + +G + ++ + A S P W Sbjct: 385 VFSSSRAGKEG--IYVMRNDGTGQVRVSRGSSADSHPTW 421 >gi|188577428|ref|YP_001914357.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae PXO99A] gi|226705899|sp|B2STJ5|TOLB_XANOP RecName: Full=Protein tolB; Flags: Precursor gi|188521880|gb|ACD59825.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 439 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 126/450 (28%), Positives = 220/450 (48%), Gaps = 38/450 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHA-----FVKVATNSANYSPVSIAFTKFVSIDELGGK-VS 66 MK L L L P S A + + SA+ +P+++ + D VS Sbjct: 1 MKKPLRWLAALTVLLLPLSALAQQQGLTIDIVGGSASATPIAVIPMPYQGSDTAPQTDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F + +K T + +FQ W +L +V GRV+ G+ RV Sbjct: 61 AVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 120 EYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGKG 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 180 GAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDIAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 238 G-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A F Sbjct: 297 PTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASVSF 345 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKDGD 413 G+K A V + G+ R+ + D +L +P+W SPS S++ ++G Sbjct: 346 DGKKIA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAAREGG 403 Query: 414 TGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G LY++ + R + L+ +P W Sbjct: 404 RG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|255020130|ref|ZP_05292200.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] gi|254970423|gb|EET27915.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] Length = 424 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 128/438 (29%), Positives = 216/438 (49%), Gaps = 24/438 (5%) Query: 13 MKINLCLLLVLIG-GFF--PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 M L +LL+ G GFF P + A T S + S + IA F V++V+ Sbjct: 1 MARRLWILLLTFGLGFFWNPAAQAALTVDVTKSVS-SALPIAIPSFGPGLPGQPSVADVI 59 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL S +F +++ S+ P + + W+ +GA L G KE V+ Sbjct: 60 RSDLSHSGLFRVLAPGSYPGDPHQPIEV-KASSWSGIGATGLAIGDTQKEANGNYVVQVY 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +++V+ +++ +++ SPA AH ++D IY++ TG+ G F +RI +V + I Sbjct: 119 VYNVQTGQELAARRYTCSPAELHMTAHHVADLIYKTFTGKAGPFAARIAYVRQ------I 172 Query: 190 KN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 N +L V + DG N + R + F P +SP+ +++AY TY D + +Y+ D Sbjct: 173 GNEYTLLVAESDGWNPHPVVRGRMPV-FSPVWSPDNRRLAYVTYHDARAI-IYVQDLATG 230 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + + ++ AP FS +G+ + + A +I+ VDL + +LT+ IN S Sbjct: 231 QR-QAVAPAGEIVSAPAFSPDGRELAYARAEGGATNIFVVDLATGQRRQLTHGSAINTSP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTK 365 S++PD +VF SDR G Q+Y M S+G D R+ S + AS PV+SP G IAF Sbjct: 290 SWAPDGRHLVFVSDRAGSPQIYSMDSDGGDVHRLTFSGNYNAS---PVYSPTGQDIAFIH 346 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + +A+ VM+ DGS R+L N P+++ +G+ +++ ++ G L ++G Sbjct: 347 RTDGVYALAVMRADGSGMRVLDAQGNCDHPSFAGNGQMILYGTQRGGR--KVLAEASVDG 404 Query: 426 RN-ETLINTPAYASDPQW 442 + L T S P W Sbjct: 405 KTLAVLRGTAGEDSQPAW 422 >gi|58581291|ref|YP_200307.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425885|gb|AAW74922.1| TolB protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 461 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 128/458 (27%), Positives = 223/458 (48%), Gaps = 38/458 (8%) Query: 5 FFIAEELNMKINLCLLLVLIGGFFPTSIHA-----FVKVATNSANYSPVSIAFTKFV-SI 58 F E +MK L L L P S A + + SA+ +P+++ + S Sbjct: 15 FPARSEPSMKKPLRWLAALTVLLLPLSALAQQQGLTIDIVGGSASATPIAVIPMPYQGSG 74 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 VS VV DL RS F + +K T + +FQ W +L +V GRV+ Sbjct: 75 TAPQTDVSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMD 133 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 G+ RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI Sbjct: 134 AGEGAYRVEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIA 193 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V+ S G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + Sbjct: 194 YVTASGKGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-S 251 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL D A + + +FR + AP FS +G+R +++ + +IY +DL S +LT Sbjct: 252 IYLQDIATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLT 310 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N I+ +++PD I F SDR G+ Q+Y + ++G R++ + +Y Sbjct: 311 NHFGIDTEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY--------- 359 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLI 405 + A F G+K A V + G+ R+ + D +L +P+W SPS S++ Sbjct: 360 NATASVSFDGKKIA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMV 417 Query: 406 FSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++G G LY++ + R + L+ +P W Sbjct: 418 LYAAREGGRG-VLYAVSSDARVRQRLVLADGDVREPAW 454 >gi|171058627|ref|YP_001790976.1| translocation protein TolB [Leptothrix cholodnii SP-6] gi|170776072|gb|ACB34211.1| Tol-Pal system beta propeller repeat protein TolB [Leptothrix cholodnii SP-6] Length = 427 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 115/418 (27%), Positives = 209/418 (50%), Gaps = 15/418 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 T+ A +V + + V IA + D+ VS +V DL+RS +F + + Sbjct: 21 TASRAQFRVEISGVGATQVPIAVLRLRDEDKAPQPVSAIVRADLERSGLFRSVEPGNVAH 80 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 T S P F DW SLG+ LV G V + R V +RLWDV ++ + + Sbjct: 81 DET---SRPVFSDWRSLGSDALVAGSVTRLADARFDVRYRLWDVVKGSELAAQALSVAKD 137 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R AH I+DD+YQ +TGE+G F++RI +VS++ + +L V D DG N + Sbjct: 138 DLRLAAHRIADDVYQKLTGERGVFSTRIAYVSKAA----NRYTLWVADADGENAQAAVGG 193 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + I+ P +SPN +++AY +++ + VY+ D + + I N++ AP +S +G Sbjct: 194 PEPII-SPAWSPNGRELAYVSFEARKAV-VYVQDVLTSKR-RVIANYKGSNSAPAWSPDG 250 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + ++++ +D +Y++ RLT + I+ A++SPD + F SDR G Q+Y Sbjct: 251 NQLVVTLTRDGLSQLYTMSRTGGDLRRLTTSSGIDTEAAWSPDGKSVYFVSDRGGGPQIY 310 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVE 388 + + G + +R++ + P SP G +A+ ++ +G F + +M+ L + Sbjct: 311 RVAAGGGNAERVTFAGNYN-ISPALSPDGRYMAYVSRLNGSAFRLTLMELATGTITTLTD 369 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 ++ ++P ++P+ R +I++ + G L + L+G + + P A +P W F Sbjct: 370 TNDDESPGFAPNSRLIIYATRAGGR--DVLMTTTLDGSIKARLGAPQADVREPTWGPF 425 >gi|84623209|ref|YP_450581.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|119371067|sp|Q2P570|TOLB_XANOM RecName: Full=Protein tolB; Flags: Precursor gi|84367149|dbj|BAE68307.1| TolB protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 439 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMNAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 KGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKIA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|21232448|ref|NP_638365.1| translocation protein TolB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767469|ref|YP_242231.1| translocation protein TolB [Xanthomonas campestris pv. campestris str. 8004] gi|188990575|ref|YP_001902585.1| translocation protein TolB [Xanthomonas campestris pv. campestris str. B100] gi|32699705|sp|Q8P6F2|TOLB_XANCP RecName: Full=Protein tolB; Flags: Precursor gi|81306551|sp|Q4UXL2|TOLB_XANC8 RecName: Full=Protein tolB; Flags: Precursor gi|226705898|sp|B0RPZ2|TOLB_XANCB RecName: Full=Protein tolB; Flags: Precursor gi|21114229|gb|AAM42289.1| TolB protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572801|gb|AAY48211.1| TolB protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732335|emb|CAP50527.1| TolB protein [Xanthomonas campestris pv. campestris] Length = 439 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 201/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VVS DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VSAVVSADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ +TG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERLLGLAMTARANAMRDVSHQMADAIYEKVTGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 SGGSMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 -ASGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKVA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSADARVRQRLVLADGDVREPAW 432 >gi|218679309|ref|ZP_03527206.1| translocation protein TolB [Rhizobium etli CIAT 894] Length = 196 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 13 MKINLCLLLVLIGGFFPTSI-----HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +K +L LV+ G ++ +A V++ N N P+ IA T F ++G +VS+ Sbjct: 9 VKCSLIRALVVAVGMTAAAVVSSPANARVEININKGNIQPLPIAVTDFQG--DMGAQVSQ 66 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR E Sbjct: 67 VIAADLQRSGLFAPINKTAFIEKISNPDASPRFEDWKVINAQALVTGRVTKEADGRLRAE 126 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 127 FRLWDTFAGQQMAGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQ 186 Query: 188 IIKNSLCVMD 197 K L +MD Sbjct: 187 QRKRQLAIMD 196 >gi|67461877|sp|Q5H299|TOLB_XANOR RecName: Full=Protein tolB; Flags: Precursor Length = 439 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 KGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKIA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|258591276|emb|CBE67573.1| Protein tolB precursor [NC10 bacterium 'Dutch sediment'] Length = 450 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/397 (29%), Positives = 208/397 (52%), Gaps = 32/397 (8%) Query: 48 VSIAFTKFVSI------DELGGKVSEVVSKDLQRSDVFNLI---------SQDSFKQKIT 92 ++IA F S+ ++LG + +++ DL+ + +F++I +Q F Q+ Sbjct: 41 ITIAVVGFPSLKAISKGEDLGAQAGAILTDDLKNTGIFDVIDPSFLPVEAAQVGFGQE-- 98 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 +P NSL Q +V G++ G D L VE +L++V + + + GK++ P + R Sbjct: 99 -KGLLPAL---NSLKVQAVVVGKLSSRG-DELVVEGQLFEVTNGEMLSGKRYAGDPRTLR 153 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 + H ++D+I +TGEKG +S+I +VS V+G + VMD D N +T Sbjct: 154 AMVHRLADEIVFRLTGEKGIASSKIAYVSS--VNG--AKEIYVMDYDAYNPLLIT-GNHS 208 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I PR+SP+ +K+AY +Y D + ++++D R ++I + + +AP +S NGK Sbjct: 209 INLSPRWSPDGKKIAYTSYRDHNP-DLFVVDLETGRR-QKISSNPGLNVAPAWSPNGKWL 266 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + S+ +++ + + +LT I+IS S++P+ QIVF SDR G Q+Y+M Sbjct: 267 VFSMSSGTGTNLFLIRPDATGLRQLTQGPHIDISPSFAPNGRQIVFSSDRGGTPQIYLMD 326 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-N 391 G++ +R++ P WSP+GD I F + F I ++ DG+ L +S N Sbjct: 327 VEGTNIRRLTFGVGDYSVSPRWSPRGDKITFVGRTRGSFDIFLINPDGTGLTQLTSNSRN 386 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + P+WS GR L+F+ ++G LY + +G ++ Sbjct: 387 NEEPSWSADGRHLLFTSTRNGH--RHLYVMKADGSDQ 421 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 12/186 (6%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 N + L S S +G +L ++ D +R LT I P F+PN +++ +++ D Sbjct: 262 NGKWLVFSMSSGTG---TNLFLIRPDATGLRQLTQG-PHIDISPSFAPNGRQIVFSS-DR 316 Query: 234 EDILRVYLMD---TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++YLMD T I R +G++ ++PR+S G + + + DI+ ++ Sbjct: 317 GGTPQIYLMDVEGTNIRRLTFGVGDYS---VSPRWSPRGDKITFVGRTRGSFDIFLINPD 373 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 +LT+ N S+S D ++F S R G LYVM+++GSDQ++++++ + +Y Sbjct: 374 GTGLTQLTSNSRNNEEPSWSADGRHLLFTSTRNGHRHLYVMKADGSDQRQLTKNGQENYL 433 Query: 351 DPVWSP 356 WSP Sbjct: 434 AD-WSP 438 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A +IY +D + +T IN+S +SPD +I + S R+ L+V+ +++ Sbjct: 187 AKEIYVMDYDAYNPLLITGNHSINLSPRWSPDGKKIAYTSYRDHNPDLFVVDLETGRRQK 246 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSP 399 IS + + P WSP G + F+ SG + +++ D + R L + ++ +P+++P Sbjct: 247 ISSNPGLN-VAPAWSPNGKWLVFSMSSGTGTNLFLIRPDATGLRQLTQGPHIDISPSFAP 305 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRN--ETLINTPAYASDPQW 442 +GR ++FS + G ++Y +D+ G N Y+ P+W Sbjct: 306 NGRQIVFSSDRGGT--PQIYLMDVEGTNIRRLTFGVGDYSVSPRW 348 >gi|294626856|ref|ZP_06705448.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665411|ref|ZP_06730699.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598870|gb|EFF43015.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604822|gb|EFF48185.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 439 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERLLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 KGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKIA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|289661909|ref|ZP_06483490.1| translocation protein TolB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667000|ref|ZP_06488075.1| translocation protein TolB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 439 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 199/392 (50%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL RS F + +K T + +FQ W +L +V GRV+ G Sbjct: 59 VSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGDGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 KGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVSASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKIA--VAQGSGNSYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|21243868|ref|NP_643450.1| translocation protein TolB [Xanthomonas axonopodis pv. citri str. 306] gi|78048828|ref|YP_365003.1| translocation protein TolB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929357|ref|ZP_08190487.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas perforans 91-118] gi|32699706|sp|Q8PHV7|TOLB_XANAC RecName: Full=Protein tolB; Flags: Precursor gi|119371066|sp|Q3BQG0|TOLB_XANC5 RecName: Full=Protein tolB; Flags: Precursor gi|21109469|gb|AAM37986.1| TolB protein [Xanthomonas axonopodis pv. citri str. 306] gi|78037258|emb|CAJ25003.1| biopolymer transport TolB protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540269|gb|EGD11881.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas perforans 91-118] Length = 439 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 KGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKIA--VAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|166712983|ref|ZP_02244190.1| translocation protein TolB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 439 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VSAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 KGGAMRYALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S++ ++ Sbjct: 344 SFDGKKIA--VAQGSGNTYRIAMVDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|226945713|ref|YP_002800786.1| translocation protein TolB [Azotobacter vinelandii DJ] gi|226720640|gb|ACO79811.1| Beta propeller TolB [Azotobacter vinelandii DJ] Length = 430 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 116/411 (28%), Positives = 208/411 (50%), Gaps = 10/411 (2%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI 97 V + +A +P+++ + + ++E+V DL+ S VF I + + + T P I Sbjct: 27 VTSGTARATPIAVVPFGWQGGSVMSDDMAEIVGNDLRNSGVFEPIPRQNMISQPTGPGEI 86 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHT 157 ++DWN+LGAQ ++ G ++ G RL+V++ L +V +Q++ S R +AH Sbjct: 87 -IYRDWNALGAQYVLVGNIVPAG-GRLQVQYALMNVATEQQVLAGSVSGSGDQVRDMAHY 144 Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 I+D ++ +TG KG F++R+L+V+ + G + +L D DGA L SR+ IL P Sbjct: 145 IADQAFEKLTGIKGAFSTRLLYVTAERMGGGTRYTLQRADYDGARAVILLQSREPIL-SP 203 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 RF+P+ +++AY +++ + R+++ R ++I NF + AP FS +G R + Sbjct: 204 RFAPDGRRIAYVSFEQKRP-RIFIQHIDTGRR-EQITNFEGLNGAPAFSPDGSRLAFVLS 261 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 KD +IY ++L S +R+TN I+ + D + F SDR GK Q+Y Q+ G Sbjct: 262 KDGNPEIYVMNLASRQLQRVTNHFGIDTEPFWGADGQTLYFTSDRAGKPQIY-RQTIGGG 320 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +R+S + + + + L+ + G F + R+L + S ++PT Sbjct: 321 AERVSFVGNYNANPKLSADEKTLVMIHRQDGYTNFKVAAQDLQRGTLRVLSDTSLDESPT 380 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFM 446 +P+G LI++ + G L SI NGR + T +P W ++ Sbjct: 381 VAPNGTMLIYATRHQGRGVLMLASI--NGRVRLPLPTAQGEVREPSWSPYL 429 >gi|325923403|ref|ZP_08185068.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas gardneri ATCC 19865] gi|325546118|gb|EGD17307.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas gardneri ATCC 19865] Length = 439 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+ VV DL RS F + +K T + +FQ W +L +V GRV+ G+ Sbjct: 59 VAAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVAKGERLLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + +YL D Sbjct: 178 SGGSMRFALMVADSDGYNPQTIVRSAEPLL-SPNWSPDGKKLAYVSFERGNS-SIYLQDI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 236 STG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++PD I F SDR G+ Q+Y + ++G R++ + +Y + A Sbjct: 295 TEPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVT--FQGNY---------NATASV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----------SPS---GRSLIFSRKKD 411 F G+K A V + G+ R+ + D +L +P+W SPS S+I ++ Sbjct: 344 SFDGKKVA--VAQGSGNTYRIAMMDRSLGSPSWSTISPGSLDESPSFAPNASMILYAARE 401 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G G LY++ + R + L+ +P W Sbjct: 402 GGRG-VLYAVSSDARVRQRLVLADGDVREPAW 432 >gi|300310549|ref|YP_003774641.1| periplasmic component of the Tol biopolymer transport system protein [Herbaspirillum seropedicae SmR1] gi|300073334|gb|ADJ62733.1| periplasmic component of the Tol biopolymer transport system protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 124/422 (29%), Positives = 207/422 (49%), Gaps = 18/422 (4%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 F P S A ++ S + IA T F + +++ VV DL RS VF LI Sbjct: 22 FAPAS-QAQIRFEITGVGASQIPIAITAFPGEESAPQQITSVVKADLARSGVFKLIDNG- 79 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 +++ ++ + DW GA L G V + R V +RL+D Q+ + Sbjct: 80 --DALSDSSAV-NYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIGA 136 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 P R AH I+DDIYQ +TG G F++RI +V++S G + L V D DG + Sbjct: 137 QPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKS--GGEYR--LEVADADGEGTQVA 192 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S + I+ P +SP+ KVAY +++ + + VY+ + + R + NF+ AP +S Sbjct: 193 LRSNEPII-SPSWSPDGTKVAYVSFEMKKPV-VYIQNL-VTRQRSIVANFKGSNSAPAWS 249 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G R +++ +D +Y ++ + RLTN+ I+ +SPD I F SDR G Sbjct: 250 PDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGP 309 Query: 327 QLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+Y + +G +R++ + SY P SP G +AF +F + + QE Sbjct: 310 QVYKVGLDGGSPQRVTFN--GSYNISPRISPDGKTLAFISRRDGQFQLYALDLTNGQEIR 367 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 L + S Q+P+++P+G+ ++++ + G GS L + ++GR + + T A +P W Sbjct: 368 LSDGSRDQSPSFAPNGKYIMYATEA-GRRGS-LAVVSVDGRIKQRLTTQAGDIREPTWGP 425 Query: 445 FM 446 FM Sbjct: 426 FM 427 >gi|319786285|ref|YP_004145760.1| Tol-Pal system beta propeller repeat protein TolB [Pseudoxanthomonas suwonensis 11-1] gi|317464797|gb|ADV26529.1| Tol-Pal system beta propeller repeat protein TolB [Pseudoxanthomonas suwonensis 11-1] Length = 462 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/449 (27%), Positives = 223/449 (49%), Gaps = 24/449 (5%) Query: 7 IAEELNMKINL----CLLLVLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDEL 61 + + L MK +L L +LI G + + +A+ P+++ + E Sbjct: 18 MPKSLPMKASLRWFFLLACLLIPGLAAAQQQGLEIDIIGGNASALPIAVVPMPY----EG 73 Query: 62 GGK-----VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 GG V++VV DL RS F + + ++ T I + W L LV GRV Sbjct: 74 GGGAPQTDVAKVVRDDLARSGQFRTLPEAQMVERPTRGGEI-NYPTWRQLRQDYLVVGRV 132 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + G+ RVE+ L+DV ++++G + ++ R +AH I+D IY+ I G +G F +R Sbjct: 133 LDAGEGGYRVEYELFDVGRGERLLGLAMTARASAMRDVAHQIADAIYEKILGVRGAFWTR 192 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V+ + ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ + Sbjct: 193 IAYVTANGSGSGMRYALVVADSDGWNPQVVVRSAEPLL-SPAWSPDGRKLAYVSFERGNS 251 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 +Y+ D A + + +FR + AP FS +G+R +S+ + +IY +DL S + Sbjct: 252 -SIYIQDIATG-ARELVSSFRGINSAPSFSPDGRRLALSLSRSGNPEIYVMDLGSKQLTQ 309 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LTN I+ ++S D S I F SDR G+ Q+Y + S+G R++ + V S Sbjct: 310 LTNHFGIDTEPTWSADGSTIYFTSDRGGRPQIYQVPSSGGAASRVTFQGNYNATATV-SH 368 Query: 357 QGDLIAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDT 414 G IA + SG + I +M GS + +L ++P+++P+G LI++ ++ G Sbjct: 369 DGKKIAMAQGSGNTYRIAMMDTSLGSPRWSTISTGSLDESPSFAPNGSMLIYAAREGGR- 427 Query: 415 GSKLYSIDLNGR-NETLINTPAYASDPQW 442 LY++ + R + L+ +P W Sbjct: 428 -GVLYAVSADARVRQRLVLADGDVREPAW 455 >gi|254490151|ref|ZP_05103342.1| Tol-Pal system beta propeller repeat protein TolB [Methylophaga thiooxidans DMS010] gi|224464637|gb|EEF80895.1| Tol-Pal system beta propeller repeat protein TolB [Methylophaga thiooxydans DMS010] Length = 432 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/439 (26%), Positives = 229/439 (52%), Gaps = 27/439 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQR 75 + LL+ L+ P HA + + + + + IA F + + +SE+VS DL Sbjct: 9 IALLIALL----PWPAHALLTIEITGGSEAALPIAIVPFGTEGFAPPEDLSEIVSNDLAS 64 Query: 76 SDVF------NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 S F +LISQ +++ F DW L ++ L+ G+V + + +V+F+ Sbjct: 65 SGRFAPLEKRDLISQPHESEQVN-------FADWRLLRSEGLLIGKVSSQDGENYQVQFQ 117 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE-SVVSGI 188 L+DV +Q++GK++ + R + H I+D +Y+++TGEKG F++R+ FVSE G Sbjct: 118 LFDVYKAEQLVGKRYQVPASGLRNLGHQIADIVYETLTGEKGVFSTRLAFVSEMKNADGS 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + +L V D DGAN R + S IL P ++P+ +++ Y ++++ VY+ R Sbjct: 178 KRYALQVSDADGANPRTVLQSTQPIL-SPNWAPDGEQLTYVSFENGKA-EVYVQQLSSGR 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISA 307 + +F + AP +S +GK+ +++ K+ +IY ++L S R+T N+ I+ A Sbjct: 236 R-NSVASFEGLNTAPAWSPDGKKLALTLSKNGNPEIYVMELASGNLSRVTHNSQAIDTEA 294 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + P +I+F SDR G+ Q+Y + ++G +R++ + + + SP G +++ Sbjct: 295 VWMPSGREILFTSDRGGRPQIYRVDASGGRAERVTFEGGYNASADI-SPDGRMMSMVHSV 353 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR- 426 +F I V ++L + + ++P+++P+GR ++++ ++ G L ++ ++GR Sbjct: 354 NGRFHIAVQDLQTGTVQVLTDTTGDESPSFAPNGRMILYATEQKGR--GILAAVSVDGRI 411 Query: 427 NETLINTPAYASDPQWVGF 445 + L + + +P W F Sbjct: 412 KQRLGESGSAVREPAWSPF 430 >gi|145588463|ref|YP_001155060.1| translocation protein TolB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046869|gb|ABP33496.1| TolB, N-terminal domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 436 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/438 (26%), Positives = 218/438 (49%), Gaps = 26/438 (5%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 ++ L+ GF T A + + S IA +F ++L ++E++ +DL RS Sbjct: 17 AIVAALLCGF-ATPALAQMNIEITGVGQSLYPIAVMRFKDENKLPTNITEIIRQDLARSG 75 Query: 78 VFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F +++ T D P ++ W + GA LV G V++ G + + ++L+D++ Sbjct: 76 YF----KNTENGNATESDEGTPNYKSWAARGADALVVGSVVQTGNGQFDIHYKLFDIRKS 131 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 + + G SS + R +AH I+DDI + GE+G F++R+ + V+ + L + Sbjct: 132 QGLGGLNLNSSADNLRAVAHKIADDIIFKLLGERGVFSTRLSY----VIKDGKRYRLVIS 187 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDT--RIDRAPKRI 253 D DG NIR S + I+ P +SP+ +KVAY +++D + ++ V+ + T RI + ++ Sbjct: 188 DADGQNIRNAMNSSEPII-SPSWSPDGKKVAYVSFEDRKPVIYVHELATGRRISLSNQKG 246 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 N AP +S +GK+ +S+ KD IY ++ + RLT I+ YS D Sbjct: 247 NNS-----APAWSPDGKKLAVSLSKDGNTQIYGINADGSGLHRLTRGNTIDTEPQYSADG 301 Query: 314 SQIVFESDREGKEQLYVMQSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 I F SDR G Q+Y M + G KR++ K+ P SP G +A+ G Sbjct: 302 RYIYFTSDRGGNPQIYRMSAEGEQVEGAKRVTF-KQGFVTSPRISPDGKYLAYIANVGGA 360 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + ++ + L + ++ ++P+++ +GR +++S K G L ++ ++G ++ + Sbjct: 361 YRLYILNLATGDSQALTDGTSDESPSFAANGRYVLYSTKVGGK--RVLAAVSVDGNSKQV 418 Query: 431 INTPAY-ASDPQWVGFMD 447 ++ P P W FMD Sbjct: 419 LSIPGSDVRQPSWGPFMD 436 >gi|134095584|ref|YP_001100659.1| TolB periplasmic protein [Herminiimonas arsenicoxydans] gi|133739487|emb|CAL62538.1| Protein TolB precursor [Herminiimonas arsenicoxydans] Length = 423 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 122/423 (28%), Positives = 207/423 (48%), Gaps = 18/423 (4%) Query: 27 FFPTSI-HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 F TS+ HA ++V + + IA F +VS ++ DL RS F +I Sbjct: 15 LFVTSLAHAQLRVEIAGVGANQIPIAIAAFGDESIAPHQVSAIIKADLLRSGYFKVIDTG 74 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 + + +S DW S GA LV G V + R V++RL+D + Q+ Sbjct: 75 T----VLTENSQVNLADWKSRGADALVVGSVSRLPDGRFDVKYRLFDTIKQAQLSSLALA 130 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + P R AH I+DDIY+ +TG +G F +RI +V+++ + L + D DG + Sbjct: 131 NQPQFIRVSAHKIADDIYEKLTGIRGAFATRIAYVTKAGK----EFRLEIADSDGEGTQV 186 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 S + I+ P +SP+ KVAY +++++ + VY+ D + R NF+ AP + Sbjct: 187 ALRSNEPII-SPAWSPDGTKVAYVSFENKKPV-VYIQDL-VSRKRTVAANFKGSNSAPSW 243 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G R +++ +D +Y V+ RL+N+ I+ YS D I F SDR G Sbjct: 244 SPDGSRLAVALSRDGLTQVYVVNADGTNPRRLSNSNGIDTEPQYSADGQSIYFTSDRSGG 303 Query: 326 EQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 Q+Y M SNG + +R++ SY P SP G +A+ KF + ++ + QE+ Sbjct: 304 PQIYKMGSNGGEARRVT--FAGSYNISPRISPDGKFLAYISRREGKFQLFILDLNNGQEQ 361 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWV 443 L + ++P++SP+G+ L+++ + G G+ L + ++G+ + L +P W Sbjct: 362 RLSDTVKDESPSFSPNGKYLMYA-TESGRRGT-LAVVSVDGQVKQRLTTQSGDIREPTWG 419 Query: 444 GFM 446 FM Sbjct: 420 PFM 422 >gi|285019183|ref|YP_003376894.1| biopolymer ABC transporter periplasmic protein [Xanthomonas albilineans GPE PC73] gi|283474401|emb|CBA16902.1| probable biopolymer transport protein, periplasmic component [Xanthomonas albilineans] Length = 439 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 116/430 (26%), Positives = 216/430 (50%), Gaps = 16/430 (3%) Query: 22 VLIGGFFPTSIHA-----FVKVATNSANYSPVSIAFTKFV-SIDELGGKVSEVVSKDLQR 75 VLI P + A + + +A+ +P+++ + S V+ VV DL R Sbjct: 10 VLIALLLPLTASAQDKGLEIDIVGGNASATPIAVVPMPYQGSAAAPSTDVAAVVRADLDR 69 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + + ++ T + ++ W +L LV GRV+ G+ RVE+ L+DV Sbjct: 70 SGQFRDLPEAQMVERPTRGSDV-QYATWRALKQDYLVVGRVLDAGEGAYRVEYELFDVAK 128 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++I+G + + R +AH ++D IY+ ITG +G F +RI +V+ S G ++ +L V Sbjct: 129 GERILGLAMTARANAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKDGAMRYALMV 188 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N + + S + +L P +SP+ +K+AY +++ + +Y+ D A + + + Sbjct: 189 ADSDGYNPQTIVRSAEPLL-SPSWSPDGKKLAYVSFEHGNS-SIYIQDIATG-ARQLVSS 245 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR + AP FS +G++ +++ + +IY +DL S +LTN I+ +++PD + Sbjct: 246 FRGINGAPSFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNNFGIDTEPTWAPDGNS 305 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I F SDR G+ Q+Y + + G RI+ + V S G IA + SG + I + Sbjct: 306 IYFTSDRGGRPQIYQVPATGGSATRITFQGNYNATASV-SYDGKKIAVAQGSGNSYKIAM 364 Query: 376 MKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLIN 432 M + R L S ++P+++P+ ++++ ++ G LY++ + R + L+ Sbjct: 365 MDRSLGAPRWSTLSTGSLDESPSFAPNASMVLYAAREGGR--GVLYAVSADARVRQRLVL 422 Query: 433 TPAYASDPQW 442 +P W Sbjct: 423 ADGDVREPSW 432 >gi|253702172|ref|YP_003023361.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. M21] gi|251777022|gb|ACT19603.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. M21] Length = 407 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 204/400 (51%), Gaps = 27/400 (6%) Query: 46 SPVSIAFTKF-VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWN 104 +PVS F L G+V+ VS++L S++F + + P + + Sbjct: 28 APVSRKLKLFPAPTTALAGQVTPEVSREL--SELFGM------DLGLAGPFEV----SGD 75 Query: 105 SLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA +++ +G + + +E RL D ++I K++ S R++ H SD++ + Sbjct: 76 GAGADLILKSSYSAQGGN-ITLECRLVDRVLNREITAKRYSGSSKELRRMGHAFSDEVLR 134 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 ++TGEKG F +I +V++ +SG + VMD DG N + LT + I +P F+P+ + Sbjct: 135 AVTGEKGPFTGKIAYVTK--ISG--NKEIFVMDYDGRNPQRLT-NNGSINLKPDFAPSGK 189 Query: 225 KVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 ++ Y +Y + D+ R L T ++ RI + + +S +G + + + KD Sbjct: 190 EIIYTSYKKGNPDLYRRELF-TGLE---ARISSRNGLNAMGAYSPDGGKIAMVMSKDGNS 245 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY + + RLTN I++S ++SPD S+I F SDR GK Q++VM ++G + +R++ Sbjct: 246 EIYLISREGKELARLTNNHAIDVSPAWSPDGSRIAFVSDRLGKPQVFVMNADGGNLRRLT 305 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + A P WSP+GD IA+ + G F I + DG+Q+ L + + P +SP GR Sbjct: 306 TNG-AYNVTPRWSPKGDRIAYARQGGGGFQIHAINPDGTQDTQLTSAGSNEHPRFSPDGR 364 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++FS +DG L D +G+ N A S P W Sbjct: 365 FIVFSSTRDGAEAIYLMRADGSGQTRVSPNK-AQNSHPTW 403 >gi|152980804|ref|YP_001354157.1| periplasmic component of the Tol biopolymer transport system [Janthinobacterium sp. Marseille] gi|151280881|gb|ABR89291.1| periplasmic component of the Tol biopolymer transport system [Janthinobacterium sp. Marseille] Length = 423 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 125/438 (28%), Positives = 212/438 (48%), Gaps = 21/438 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHA--FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K ++ F T HA V++A AN PV+IA F +VS ++ Sbjct: 2 IKTTFLRSFAVMALFITTLAHAQLRVEIAGVGANQIPVAIA--AFGDETLAPQQVSAIIK 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F +I + +S DW S GA +V G V+K R V +RL Sbjct: 60 ADLLRSGFFKIIDTGG----VLTENSQLNLADWKSRGADAIVVGSVLKLADGRYEVRYRL 115 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +D Q+ S P R AH ++DD+Y+ +TG KG F +RI +V++S + Sbjct: 116 FDTVKGTQLSSLALASQPQFLRVSAHKVADDVYEKLTGIKGAFATRIAYVTKSPK----E 171 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L + D DG + S + I+ P +SP+ KVAY +++++ + VY+ D + R Sbjct: 172 FRLEIADSDGEGTQVALRSNEPII-SPSWSPDGTKVAYVSFENKKPV-VYIQDL-VSRKR 228 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 NF+ AP ++ +G R +++ +D +Y V+ RL+++ I+ +S Sbjct: 229 TVAANFKGSNSAPSWAPDGNRLAVALSRDGLTQVYVVNADGTGLRRLSSSNGIDTEPQFS 288 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGE 369 D I F SDR G Q+Y M +NG + +R++ SY P SP G +A+ Sbjct: 289 ADGQSIFFTSDRSGGPQIYKMGANGGEARRVT--FSGSYNISPRISPDGKYLAYISRREG 346 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 KF + ++ QE+ L + ++P++SP+G+ L+++ + G G+ L + ++G+ + Sbjct: 347 KFQLFLLDLTNGQEQRLSDTVKDESPSFSPNGKYLMYA-TESGRRGT-LAVVSVDGQVKQ 404 Query: 430 LINTPAY-ASDPQWVGFM 446 + T A +P W FM Sbjct: 405 RLTTQAGDIREPTWGPFM 422 >gi|34495564|ref|NP_899779.1| translocation protein TolB [Chromobacterium violaceum ATCC 12472] gi|67461997|sp|Q7P1V3|TOLB_CHRVO RecName: Full=Protein tolB; Flags: Precursor gi|34101419|gb|AAQ57788.1| TolB protein precursor [Chromobacterium violaceum ATCC 12472] Length = 428 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 111/385 (28%), Positives = 191/385 (49%), Gaps = 14/385 (3%) Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 G ++ V+ DL S F LI + P I R+ W + GAQ L G+V G Sbjct: 53 GNLTPVIRNDLALSGAFRLIDPSAVANVPFEPADI-RYPLWQAAGAQSLAIGKVESAGGG 111 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 ++++ FRL D RKQ+ G +F +P R++AH I+D IY++ITG+KG FN+R+ +V + Sbjct: 112 QIKISFRLMDASQRKQLTGGEFTVTPDRSRQVAHAIADMIYEAITGQKGFFNTRLAYVLK 171 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S S +L + D DG + + S + I+ P +SP+ + +AY ++ + + V++ Sbjct: 172 SGRS----YALQISDVDGQRSQTILRSTEPII-SPSWSPDGRHIAYVSFASQKPV-VWVQ 225 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + + NF+ AP +S +G + + + IY ++ RL Sbjct: 226 DLATGQR-RAVANFKGSNSAPAWSPDGSKLAVVLTTSGNSQIYIINAAGGPARRLMYNGG 284 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLI 361 I+ ++SPD S + F SDR G Q+Y + NG + +R++ E +Y P SP G + Sbjct: 285 IDTEPAFSPDGSMVYFVSDRSGNPQIYRVPVNGGNAQRVTW--EGAYNVSPKLSPDGKTL 342 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + S F + + R L + S + P+++P+GR +++S G S LY+ Sbjct: 343 VYIRRSAGNFRVMSQDLATNDSRQLSDGSYSERPSFAPNGRMVLYSSDAGGQ--SVLYAA 400 Query: 422 DLNGRNET-LINTPAYASDPQWVGF 445 +G ++ L DP W F Sbjct: 401 TADGSSKVKLAVLNGDVQDPAWGPF 425 >gi|311103961|ref|YP_003976814.1| Tol-Pal system beta propeller repeat protein TolB [Achromobacter xylosoxidans A8] gi|310758650|gb|ADP14099.1| Tol-Pal system beta propeller repeat protein TolB [Achromobacter xylosoxidans A8] Length = 417 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 123/431 (28%), Positives = 210/431 (48%), Gaps = 21/431 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 L L + P V ++ A PV+IA F D G ++EV+ DL R+ Sbjct: 2 LTLACLMAIKPAHAQLRVDISGTGATQYPVAIA--DFAVDDTHGRALAEVIRADLTRTGQ 59 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F LI+ + +P + DW GA + G + + G R V +RL D + Q Sbjct: 60 FRLINAAGSGLNVDSPIA---HDDWRGKGADFIAYGSITRGGDGRYDVRYRLADTVKKSQ 116 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 + G F + R++AH I+D IY+ ITG KG F++RI +V + + L V D Sbjct: 117 LDGVAFSGTEQELRRVAHQIADRIYEKITGVKGVFSTRIAYVLKKGAT----YELQVADA 172 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFR 257 DG N + SR+ I+ P +SP+ K+AY +++ + ++ V+ + T R+P + NF+ Sbjct: 173 DGQNPQVALRSREPII-SPSWSPDGSKLAYVSFESGKPVVYVHNLATSA-RSP--VANFK 228 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ--SNATERLTNTLFINISASYSPDSSQ 315 AP +S +G + +++ +D IY V SN T R+T + I+ S++PD + Sbjct: 229 GNNSAPGWSPDGSKLAVALTRDGLSQIYIVGATDGSNPT-RVTRSPGIDTEPSFTPDGAS 287 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I+F SDR G Q+Y S+G + +R++ + + P SP G + + F I Sbjct: 288 IIFTSDRSGGPQIYQTGSSGGEARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIAS 346 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTP 434 + E LL + + Q+P+++P+G ++++ ++G S L + +GR +TL Sbjct: 347 LNLSSGSETLLTDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLN 404 Query: 435 AYASDPQWVGF 445 +P W F Sbjct: 405 GEIREPTWGPF 415 >gi|116748201|ref|YP_844888.1| TolB domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697265|gb|ABK16453.1| TolB, N-terminal domain protein [Syntrophobacter fumaroxidans MPOB] Length = 457 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 116/396 (29%), Positives = 199/396 (50%), Gaps = 30/396 (7%) Query: 44 NYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP- 98 N+ ++IA F +L ++ E ++ DL S +F + F + +P ++ Sbjct: 53 NFQRIAIAIPDFKRQSSEQTQLAREMGETLAGDLDFSGIFRPLDPKGF---LEDPQTMGL 109 Query: 99 -----RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 +F DW LGA +V G + +G +++E RL+DV + +I K + WR Sbjct: 110 NAPEIKFPDWRRLGADYMVRGNYLVQGGT-VKIEARLFDVAAGRPVIAKAYEGDVRGWRA 168 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQ 212 + H +D+I ++TGE+G F+++I +V + KN + + D DG+N + SRD Sbjct: 169 MIHRFADEILYALTGERGVFDTKIAYVQS-----MGKNKEIFISDFDGSNP--VQASRDN 221 Query: 213 IL-FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 L P ++P ++AY +Y D + ++YL++ + D + + + + M ++P + Sbjct: 222 SLSLSPAWNPQMSQIAYVSYRDGNA-KIYLLNLQ-DGSSRLLCGYPGMNISPAWRPGRPE 279 Query: 272 ALISVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 +++ +D DI+ V S ++L IN+S +SPD + F SD G Q+Y Sbjct: 280 LAVTLTRDGNPDIFLVSASSGQILQKLVQGRSINVSPDWSPDGRSLAFVSDESGNPQIYA 339 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-D 389 + GS QKR P WSP+GD IA++ G + I +MK DGS R L + D Sbjct: 340 IDV-GSGQKRRLTFSGTYNTSPSWSPKGDFIAYSGTVGGRHHIFIMKTDGSGNRQLTDGD 398 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + +PTWSP GR + FS + G GS ++ +NG Sbjct: 399 GDDVSPTWSPDGRMIAFSSTRQG--GSAIWVSSVNG 432 >gi|124266539|ref|YP_001020543.1| translocation protein TolB [Methylibium petroleiphilum PM1] gi|124259314|gb|ABM94308.1| TolB protein precursor, periplasmic component of the Tol biopolymer transport system [Methylibium petroleiphilum PM1] Length = 421 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 111/408 (27%), Positives = 202/408 (49%), Gaps = 16/408 (3%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + + IA KF ++ V +V DL+RS VF + + + S Sbjct: 23 RVEISGVGATQLPIAVVKFRDEEKAPQPVGAIVRADLERSGVFRNLDTSGV---VLDEGS 79 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P DW A LV G V + R V +RLWDV + + G+ + R AH Sbjct: 80 QPAMSDWRGRSADALVGGSVTRLADGRFDVRYRLWDVVKGRDLGGQSYAVPAGDLRLAAH 139 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D IY+ +TGEKG F++RI +V++ G + +L V D DG + S + I+ Sbjct: 140 RIADAIYEKLTGEKGVFSTRIAYVTK----GGGRFTLWVTDADGEGGQSALASPEPII-S 194 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ +++AY +++ + VY+ + + + + +FR AP +S +G++ +++ Sbjct: 195 PAWSPDGRELAYVSFESRKAV-VYVQEVASGKR-RTLASFRGSNSAPAWSPDGRQLALTL 252 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D ++ + +RLT++ I+ A+++PD I F SDR G Q+Y + + G Sbjct: 253 SRDGGSQLFVMGRDGEGVKRLTSSGAIDTEATWAPDGKSIYFVSDRGGSPQIYRVPAGGG 312 Query: 337 DQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + +R+S SY P SP G +A+ G F + VM R + + + ++P Sbjct: 313 NAERVS--FSGSYNISPAISPDGRTMAYISRDGGAFRVQVMDLASGTARAVSDTKDDESP 370 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 +++P+GR +I++ + G L + +G+ L++T A +P W Sbjct: 371 SFAPNGRLIIYATRDGGR--DVLMTTTTDGKIKARLVSTQADVREPVW 416 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + L VM RDG ++ LT S I E ++P+ + + Y D ++Y + A Sbjct: 258 SQLFVMGRDGEGVKRLT-SSGAIDTEATWAPDGKSI-YFVSDRGGSPQIYRVPAGGGNA- 314 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ S ++P S +G+ + A + +DL S T R + + S S++ Sbjct: 315 ERVSFSGSYNISPAISPDGRTMAYISRDGGAFRVQVMDLASG-TARAVSDTKDDESPSFA 373 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 P+ I++ + G++ L ++G + R+ +A +PVW P G Sbjct: 374 PNGRLIIYATRDGGRDVLMTTTTDGKIKARLVS-TQADVREPVWGPYG 420 >gi|89900876|ref|YP_523347.1| translocation protein TolB [Rhodoferax ferrireducens T118] gi|119371056|sp|Q21WN7|TOLB_RHOFD RecName: Full=Protein tolB; Flags: Precursor gi|89345613|gb|ABD69816.1| TolB-like [Rhodoferax ferrireducens T118] Length = 425 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 17/415 (4%) Query: 9 EELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + + +I LCLL+ G + A +V + + + IA + F D + K++ + Sbjct: 2 QMMKKRILLCLLV----GMTCLPVLAQFRVEVSGVGLTQLPIAVSAFRGQDSVPQKIAAI 57 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V DL+RS F + D+ + + + P W GA LVTG V + R V F Sbjct: 58 VQADLERSGQFRGV--DTVGAAL-DEGTRPDVALWRQKGADSLVTGSVSRLADGRYDVRF 114 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV + + G+ + + A R AH I+D IY+ +TG+KG F++RI +V+++ Sbjct: 115 RLWDVVRGQDLGGQSYAVTQADLRLSAHRIADFIYEKLTGDKGAFSTRITYVTKAAQ--- 171 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + L V D DG N + S + I+ P +SPN ++AY +++ + VY D + Sbjct: 172 -RYQLWVADADGENAQSALASPEPII-SPAWSPNGSQIAYVSFESRKPV-VYTHDVATGK 228 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + I NFR AP +S +G+ +++ +D +Y++D RL I+ Sbjct: 229 R-RLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYAIDAGGGEPRRLAQNSSIDTEPV 287 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFS 367 Y+PD I F SDR G Q+Y M G +R++ +Y P SP G +A+ Sbjct: 288 YAPDGKNIYFVSDRGGAPQIYRMPVTGGGAERVT--FTGTYNISPAISPDGRWLAYISRV 345 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 F + V++ + + + ++P+++P+ R ++++ + G ++D Sbjct: 346 SGAFKLHVLELASGAVTAITDTTADESPSFAPNSRLIVYATQSQGREALMTATVD 400 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 14/176 (7%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ + DL+ +A R+ + ++ ++ S++I + + + QL+V ++G + + Sbjct: 128 QSYAVTQADLRLSA-HRIADFIYEKLTGDKGAFSTRITYVTKAAQRYQLWVADADGENAQ 186 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTW 397 E P WSP G IA+ F K + + RL+ SN AP W Sbjct: 187 SALASPE-PIISPAWSPNGSQIAYVSFESRKPVVYTHDVATGKRRLIANFRGSN-SAPAW 244 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNG-------RNETLINTPAYASDPQWVGFM 446 SP GR+L + +DG GS+LY+ID G +N ++ P YA D + + F+ Sbjct: 245 SPDGRTLAVTLSRDG--GSQLYAIDAGGGEPRRLAQNSSIDTEPVYAPDGKNIYFV 298 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 8/183 (4%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + R L V+ S G + L +D G R L I EP ++P+ + + Y D Sbjct: 247 DGRTLAVTLSRDGG---SQLYAIDAGGGEPRRLA-QNSSIDTEPVYAPDGKNI-YFVSDR 301 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 ++Y M A +R+ + ++P S +G+ + A ++ ++L S A Sbjct: 302 GGAPQIYRMPVTGGGA-ERVTFTGTYNISPAISPDGRWLAYISRVSGAFKLHVLELASGA 360 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +T+T + S S++P+S IV+ + +G+E L +G + R++ + +P Sbjct: 361 VTAITDTT-ADESPSFAPNSRLIVYATQSQGREALMTATVDGKVKARLA-GQNGDIREPG 418 Query: 354 WSP 356 W P Sbjct: 419 WGP 421 >gi|241764619|ref|ZP_04762634.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax delafieldii 2AN] gi|241365940|gb|EER60570.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax delafieldii 2AN] Length = 439 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 116/422 (27%), Positives = 205/422 (48%), Gaps = 18/422 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 +A + + LL LI ++ F +V + + IA F + K++ Sbjct: 11 LAAAVPQPLRRHLLAALISTPALPALAQF-RVEVTGVGLTQLPIAIAPFRGEAQSPQKIA 69 Query: 67 EVVSKDLQRSDVFNLI-SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +V DL+RS F + + S + + PD W GA L TG V + R Sbjct: 70 GIVQADLERSGQFRAVDAAGSTLDETSRPD----VALWRQKGADSLATGSVTRLADGRFD 125 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V FRLWDV + + G+ F + R +AH I+D IY+ +TGE+G F++RI++V++S Sbjct: 126 VRFRLWDVVRGQDLGGQSFVVTQGDLRLVAHRIADYIYEKLTGERGVFSTRIVYVTKSGT 185 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + SL V D DG N + S + I+ P +SPN ++AY +++ + VY+ D Sbjct: 186 ----RYSLWVADADGENAQSALSSPEPII-SPAWSPNGGQIAYVSFESRKPV-VYVHDVA 239 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R + I NFR AP ++ +G+ +++ +D A +Y++D RL + I+ Sbjct: 240 SGRR-RLIANFRGSNSAPAWAPDGRTLAVTLSRDGASQLYTIDANGGEPRRLMQSAGIDT 298 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFT 364 +S D I F SDR G Q+Y + ++G + +R++ +Y P SP G +A+ Sbjct: 299 EPVFSGDGRSIYFVSDRGGAPQIYKVPASGGNAERVT--FSGTYNISPSISPDGRWLAYI 356 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 G F + VM + + S+ + P+++P+ R ++++ ++ G L + L+ Sbjct: 357 SRIGGAFKLHVMDLSSGAVSAITDTSSDENPSFAPNSRLIVYATQQQGR--EALMTTTLD 414 Query: 425 GR 426 G+ Sbjct: 415 GK 416 >gi|322418108|ref|YP_004197331.1| Tol-Pal system beta propeller repeat-containing protein TolB [Geobacter sp. M18] gi|320124495|gb|ADW12055.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. M18] Length = 406 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 111/339 (32%), Positives = 178/339 (52%), Gaps = 17/339 (5%) Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 G+ +L+ EG D + +E RL D +++ K++ R++AH SD++ +++ Sbjct: 78 GSALLLKSAYGTEG-DTVIIECRLVDQVRNREVTAKRYSGRAKDLRRMAHAFSDEVLRAL 136 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 TGEKG F +I +VS+ +SG + +MD DG N + LT + I P F+P+ +++ Sbjct: 137 TGEKGPFTGKIAYVSK--ISG--NKEIFLMDYDGRNPQRLT-NNGSINLYPDFAPSGKEL 191 Query: 227 AYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 Y +Y + D+ R L R R G +M + FS +G R + + KD ++ Sbjct: 192 IYTSYKKGNPDLYRRELFTGLEARISSRSG-LNAMGV---FSPDGSRVALVLSKDGNSEV 247 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y + RLT I+IS S+SPD S++ F SDR GK QL+VM +NG + +R++ Sbjct: 248 YQIARDGKEVARLTKNHAIDISPSWSPDGSRVAFVSDRLGKPQLFVMDANGGNVRRLTTS 307 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 A P WSP+GD I + + G F I + DGSQ+ L + + P +SP GR + Sbjct: 308 G-AYNVTPRWSPKGDRIVYARKEG-GFQIYAINPDGSQDTQLTSAGSNEHPRYSPDGRFI 365 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQW 442 +FS +DG G LY + +G +T I+ A + P W Sbjct: 366 VFSSTRDG--GEGLYLMRADGTGQTRISPNKAQNTHPTW 402 >gi|91787860|ref|YP_548812.1| translocation protein TolB [Polaromonas sp. JS666] gi|118574592|sp|Q12C28|TOLB_POLSJ RecName: Full=Protein tolB; Flags: Precursor gi|91697085|gb|ABE43914.1| TolB-like protein [Polaromonas sp. JS666] Length = 426 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 199/410 (48%), Gaps = 17/410 (4%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 ++ +L G P A +V + + + IA F + K+ +V DL+RS Sbjct: 11 TVMSLLAAGLSPA--FAQFRVEVSGVGLTQLPIAIASFRGEVQAPQKIGNIVRADLERSG 68 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F + + + ++ P W GA +VTG V R V RLWD+ + Sbjct: 69 MFRPVDTAGI---VADENTRPDLAIWRQKGADAMVTGSVSPLADGRFDVRLRLWDIVRGQ 125 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + G+ + + A R AH ISD +Y+ +TGEKG F++RI +V+++ + +L V D Sbjct: 126 DLGGQSYTVAQADLRLSAHRISDFVYEKLTGEKGIFSTRIAYVTKTAQ----RFNLWVAD 181 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + S + I+ P +SPN ++AY +++ + +Y D + + + NFR Sbjct: 182 SDGEGAQSALTSPEPII-SPSWSPNGSQLAYVSFESRKPV-IYAHDVATGKR-RLLANFR 238 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP +S +GK+ + ++ +D IY++ L +RLT + I+ +YSPD I Sbjct: 239 GSNSAPAWSPDGKQLVATLSRDGGSQIYALGLSGGDPKRLTQSSSIDTEPAYSPDGRYIY 298 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G Q+Y M G + +R++ Y P SP G +A+ G F + VM Sbjct: 299 FVSDRGGAPQIYRMSPGGGNPERVT--FTGGYNISPAISPDGRWLAYVSRVGGAFKLHVM 356 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + + + ++P+++P+ R ++++ ++ G L + L+G+ Sbjct: 357 ELASGTATPITDTTADESPSFAPNSRLIVYATQQQGR--EALMTTTLDGK 404 >gi|53804448|ref|YP_113693.1| translocation protein TolB [Methylococcus capsulatus str. Bath] gi|67461931|sp|Q609K4|TOLB_METCA RecName: Full=Protein tolB; Flags: Precursor gi|53758209|gb|AAU92500.1| tolB protein [Methylococcus capsulatus str. Bath] Length = 424 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 115/425 (27%), Positives = 213/425 (50%), Gaps = 17/425 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 LLL+ G + A ++V + + +A F + L +S++VS DLQRS Sbjct: 14 LLLIAAG-----QVCAELQVQISQGVEGAIPVAVVPFANQGSLSDSLSQIVSADLQRSGR 68 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F +++ + +++ T PD + + W +LG +V G++ G D +F + DV Sbjct: 69 FRTLAESAMQERPTAPDQVQQAA-WQALGQDFVVVGQIRPSG-DGYEADFHVVDVIRGTL 126 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 ++ + A R+ AH I+D IY++ITGE G F +R+ +VS S + +L V D Sbjct: 127 VVSYRLPFGRAETRQAAHRIADVIYKAITGEPGAFATRVAYVSVSGEGANRRYNLQVADT 186 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N + + S + I+ P +SP+ K+AY ++ E + T +++ + Sbjct: 187 DGYNPQSVIVSNEPIM-SPAWSPDGTKIAYVSF--ESRRSAIYVQTLATGERRKVSDAPG 243 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + AP FS +G R +++ KD DIY ++L S R+T+ I+ ++S D IVF Sbjct: 244 INGAPAFSPDGSRLALTLSKDGNPDIYVMNLGSGGLTRITDYSGIDTEPNWSRDGRSIVF 303 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR GK QLY++ ++G +R++ + + + V+SP G +A G + I VM Sbjct: 304 TSDRGGKPQLYLVSASGGPAERLTYEGDYNARG-VFSPDGRSLAMVHGKGGDYRIAVMDL 362 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYA 437 R+L ++P ++P+G ++++ ++ +L ++ ++G+ ++L Sbjct: 363 ASRAVRVLTSGPLDESPGFAPNGSMILYAARR-----GQLAAVSIDGKVRQSLRIEGGAV 417 Query: 438 SDPQW 442 +P W Sbjct: 418 REPAW 422 >gi|149927732|ref|ZP_01915984.1| translocation protein TolB precursor [Limnobacter sp. MED105] gi|149823558|gb|EDM82788.1| translocation protein TolB precursor [Limnobacter sp. MED105] Length = 445 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 113/386 (29%), Positives = 197/386 (51%), Gaps = 17/386 (4%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL RS F I+ S + N ++ W S+G L+ G V K RL Sbjct: 73 IKKVIEDDLVRSGFFRSINTTSNVE--LNESTLIDPSAWKSIGVDALIVGSVKKLPDGRL 130 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + F L D +K + + +P++ R AH I+D +Y+ + GEKG F++R+ +V ++ Sbjct: 131 DLRFNLHDTAQQKSLGKFSYVIAPSALRLHAHKIADFVYEKMLGEKGVFSTRLAYVEKAP 190 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMD 243 + L + D DGAN + S++ I+ P +SP+ ++AY +++ + ++ V+ + Sbjct: 191 G----RYRLIIADADGANPQVALASKEPII-SPAWSPDGTQLAYVSFETRKPVVFVHTLA 245 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 T +A + NF+ AP +SSNG++ + + KD I+S++ ++ RLT+T I Sbjct: 246 TGRRKA---LANFKGSNSAPAWSSNGQQLAVVLTKDGGSQIFSMNADGSSLNRLTSTGGI 302 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIA 362 N +YS D I F SDR G Q+Y M +NG D R++ E Y P SP + Sbjct: 303 NTEPAYSHDGRSIYFTSDRGGGPQIYRMSTNGGDATRVT--FEGGYNISPRISPDDKTLT 360 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +F I + G E LL ++P+++P+GR ++++ K G L + Sbjct: 361 YVTRRDGQFRIAALDLAGGTEMLLTNTGRDESPSFAPNGRYILYATKSGGK--GTLAVVS 418 Query: 423 LNGR-NETLINTPAYASDPQWVGFMD 447 +GR TL ++ A S+P W F++ Sbjct: 419 KDGRIKYTLSSSGADISEPTWGPFIN 444 >gi|114776298|ref|ZP_01451343.1| translocation protein TolB precursor [Mariprofundus ferrooxydans PV-1] gi|114553128|gb|EAU55526.1| translocation protein TolB precursor [Mariprofundus ferrooxydans PV-1] Length = 421 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 196/406 (48%), Gaps = 20/406 (4%) Query: 43 ANYSPVSIAFTKFVSIDELGGK--VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPR- 99 ++Y P+ +A D G + V +VVS DL S F I +F + +PDS P Sbjct: 27 SDYRPLQVALLVEGEADAPGDRTMVRQVVSHDLASSQSFKPIDPMAF---LVSPDSAPAS 83 Query: 100 --FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHT 157 + DW +GA +L + ++ L+ + ++D KQ++ S R +AH Sbjct: 84 VDYGDWRLIGADILAICK-LRTVNGVLQADVHVYDPFRGKQLLSLVLEGSKPGLRVLAHR 142 Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 ++D IYQ+ G G F S +L+V++ G + + L MD+DGAN R + +L P Sbjct: 143 VADQIYQAALGIPGYFTSHVLYVTKH---GDLSD-LVYMDQDGAN-RQVVGKNFTLLLSP 197 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ +VA TY R+ + R + K G F+ + P FS +G+ ++ Sbjct: 198 DWSPDGNEVALNTYVGNHP-RLEFFNLRTG-SRKAFGEFKGLNSTPEFSPDGRYVAATLS 255 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 ++I+ D++ T+ I+ + ++SPD I F S+R GK Q+Y +G Sbjct: 256 DKNDINIHIYDVKKGTWRAFTHGHAIDTTPTWSPDGKWIAFVSNRSGKPQIYRKPLSGGR 315 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 + +S + P WSP GD IA FA+ +K DG+ R L +++P+W Sbjct: 316 AQLVSTSGTYNT-SPAWSPTGDRIAMISLKNWSFAVATVKPDGTDIRYLATGKRVESPSW 374 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQW 442 S +G+ L++S ++ G +LY + G + +PA ASDP W Sbjct: 375 SSNGQMLLYSAEEHGI--RRLYRVPSWGGTPEAVTSPAIDASDPAW 418 >gi|95929959|ref|ZP_01312699.1| TolB-like [Desulfuromonas acetoxidans DSM 684] gi|95133928|gb|EAT15587.1| TolB-like [Desulfuromonas acetoxidans DSM 684] Length = 433 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 120/444 (27%), Positives = 216/444 (48%), Gaps = 29/444 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVK-VATNSANYSPVSIAFTKFVSIDE----LGGKVSE 67 MK L + LVL+ + K + + + ++ T+ + + L V + Sbjct: 1 MKKTLIMALVLLVSVLGAAGMTTAKEIVITTPGKQAIPMSLTRILPFQQRDTVLEETVDK 60 Query: 68 VVSKDLQRSDVFNLISQDSF-----KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 V+S DL S +F + +F + +T+ + F W LGAQVL G G Sbjct: 61 VLSADLDLSGLFEFVDPQAFLDDAGRMGLTSTEV--NFTQWRLLGAQVLFKGGYRLNGS- 117 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 ++ + RL+DV R+ ++G + + R++AH+ +D I +++TG+ G FN+RI F+S Sbjct: 118 QVELNLRLFDVISRRLLVGHNYRGQVSDVRRMAHSFADLILEALTGKSGAFNTRIAFISN 177 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDILRVY 240 SG L +M+ DG + + +T R +L P FSP ++V + +Y + D+ R Sbjct: 178 Q--SG--HKELYLMESDGYDPKRITNHRSLVL-NPDFSPLGREVIFTSYRQGNPDLYRKE 232 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + + RI ++ + ++ R+ +G+ +++ +D +IY L +R+TN+ Sbjct: 233 IYTGK----EARISRYKGLNISGRYRHDGRELALTLSRDGNAEIYLESLSGQLHKRVTNS 288 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I++ S+SP Q+VF S+R+G L+V +R++ + + + P WSP G Sbjct: 289 WAIDVDPSWSPIGDQLVFVSNRQGNPNLFVADLIDGQVRRLTYNGKYNA-TPAWSPDGKR 347 Query: 361 IAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 I F++ G F + + DG +ER L N + P WSP GR +++S G +Y Sbjct: 348 IVFSRLEGGAFNLFSIGVDGKEERQLTFGAGNKEHPRWSPDGRFIVYSNDISGK--KAIY 405 Query: 420 SIDLNGRNETLINT-PAYASDPQW 442 + +G + I+T A S P W Sbjct: 406 VMRADGSGQRRISTLDADCSHPAW 429 >gi|163854963|ref|YP_001629261.1| translocation protein TolB [Bordetella petrii DSM 12804] gi|163258691|emb|CAP40990.1| TolB protein precursor [Bordetella petrii] Length = 439 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 121/418 (28%), Positives = 205/418 (49%), Gaps = 21/418 (5%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA ++V + + +A F D G ++EV+ DL R+ F LIS + Sbjct: 36 HAQLRVDISGTGATQYPVAIADFAVDDVHGRAIAEVIRADLTRTGQFRLISAAGSGLNVD 95 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 +P + + DW + GA L G + + R V +RL D + Q+ G F S R Sbjct: 96 SPVA---YDDWRTKGADFLAYGSITRGADGRYDVRYRLADTVKKGQLDGVAFSGSEQELR 152 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 ++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + SR+ Sbjct: 153 RVAHQIADRIYEKITGVRGVFSTRIAYVLKRGNT----YELQVADADGQNPQVALRSREP 208 Query: 213 ILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 ++ P +SP+ K+AY +++ + ++ V+ + T R P + NF+ AP +S +G + Sbjct: 209 VI-SPAWSPDGSKLAYVSFESGKPVVYVHTLATSA-RIP--VANFKGNNSAPAWSPDGSK 264 Query: 272 ALISVQKDEAMDIYSV--DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 +++ +D IY V D SN RLT + I+ ++PD I+F SDR G Q+Y Sbjct: 265 LAVALTRDGLSQIYIVGADGSSN-MRRLTRSPGIDTEPIFTPDGRSIIFTSDRSGGPQIY 323 Query: 330 VMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +G D +R++ + SY P SP G + + F I ++ E LL + Sbjct: 324 QTSLDGGDARRLTFN--GSYNISPRISPDGSTLLYVARRDGAFRIASLQLATGNETLLTD 381 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + QAP+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 382 GRDDQAPSFAPNGMQILYAAVQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 437 >gi|71275796|ref|ZP_00652080.1| TolB, N-terminal [Xylella fastidiosa Dixon] gi|71900395|ref|ZP_00682528.1| TolB, N-terminal [Xylella fastidiosa Ann-1] gi|71163374|gb|EAO13092.1| TolB, N-terminal [Xylella fastidiosa Dixon] gi|71729827|gb|EAO31925.1| TolB, N-terminal [Xylella fastidiosa Ann-1] Length = 474 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 222/456 (48%), Gaps = 28/456 (6%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSI 58 S+ F +L+M L +L+G FP S + + N + IA Sbjct: 25 SIIFLKVIDLHMTKFPRWLAILVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYH 84 Query: 59 DELGGK---VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 D G VS VV+ DL RS F + ++ T+ I RF W +L +V GR Sbjct: 85 DSAGAPATDVSGVVAADLNRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGR 143 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V+ + RVE+ L+DV++ K+++G + ++ R +AH ++D IY+ ITG +G F + Sbjct: 144 VLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFT 203 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +V+ S G ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ Sbjct: 204 RIAYVTASGSHGAMRYALMVADSDGYNPQTIVRSAEPLL-SPDWSPDGKKLAYVSFEKGG 262 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + + + +FR + AP F+ +G R +S+ + +IY +DL S Sbjct: 263 S-SIYIQDIATG-SRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLI 320 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASY 349 +LTN+ I+ +S D I F SDR G+ Q+Y + S G R++ SY Sbjct: 321 QLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATASVSY 380 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFS 407 D I + SG + I +M + GS + +L ++P+++P+ ++++ Sbjct: 381 DD-------KKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYA 433 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++ G LY++ + R + L++ + +P W Sbjct: 434 AREGGR--GVLYAVSADARVRQRLVSVDSDVREPAW 467 >gi|293603404|ref|ZP_06685831.1| TolB protein [Achromobacter piechaudii ATCC 43553] gi|292818177|gb|EFF77231.1| TolB protein [Achromobacter piechaudii ATCC 43553] Length = 416 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 209/435 (48%), Gaps = 26/435 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCL+ P V ++ A PV+IA F D G ++EV+ DL Sbjct: 2 LALCLMAAK-----PAHAQLRVDISGTGATQYPVAIA--DFAVDDTHGRALAEVIRADLT 54 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 R+ F LI+ + +P + DW GA L G + + R V +RL D Sbjct: 55 RTGQFRLINAAGSGLNVDSPIA---HDDWRGKGADFLAYGSITRGADGRYDVRYRLADTV 111 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + Q+ G F + R++AH I+D IY+ ITG +G F++RI +V + + L Sbjct: 112 KKGQLDGVAFSGTEQELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKKGAT----YELQ 167 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRI 253 V D DG N + SR+ I+ P +SP+ K+AY +++ + ++ V+ + T R P + Sbjct: 168 VADADGQNPQVALRSREPII-SPSWSPDGAKLAYVSFESGKPVVYVHTLATSA-RVP--V 223 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ--SNATERLTNTLFINISASYSP 311 NF+ AP +S +G + +++ +D IY V SN T R+T + I+ +++P Sbjct: 224 ANFKGNNSAPAWSPDGSKLAVALTRDGLSQIYIVGASDGSNPT-RVTRSPGIDTEPTFTP 282 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D + I+F SDR G Q+Y S G + +R++ + + P SP G + + F Sbjct: 283 DGASIIFTSDRSGGPQIYQTGSTGGEARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAF 341 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETL 430 I + E LL + + Q+P+++P+G ++++ ++G S L + +GR +TL Sbjct: 342 RIASLNLSSGSESLLTDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTL 399 Query: 431 INTPAYASDPQWVGF 445 +P W F Sbjct: 400 SVLNGEIREPTWGPF 414 >gi|120554619|ref|YP_958970.1| translocation protein TolB [Marinobacter aquaeolei VT8] gi|120324468|gb|ABM18783.1| TolB, N-terminal domain protein [Marinobacter aquaeolei VT8] Length = 442 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/435 (26%), Positives = 217/435 (49%), Gaps = 14/435 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL--GGKVSEV 68 L + CL+L L A + + S + IA F + G KV + Sbjct: 14 LKTPVIACLVLFLTASL---GARAELLIRITEGAGSAIPIAVVPFAESGSMPAGDKVGSI 70 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V DL S F + + S + + S F+DW LG + ++ G++ + G DR++ + Sbjct: 71 VQADLTMSGEFRPL-EPSKMLSLPSERSEVYFRDWRMLGQRYVLVGQLTRNG-DRIQARY 128 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV K+I+G+ ++ R + H ISD +Y++ITG G F++++ +++ S Sbjct: 129 ELFDVNQEKRILGETAAVPASNLRSLGHHISDRVYEAITGAPGVFSTKLAYITVSGEGEQ 188 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD-DEDILRVYLMDTRID 247 + L V D DG + SR+ IL P +SP+ +K+AY +++ + ++ V+ + T + Sbjct: 189 TRYRLQVSDVDGKRSKVRLESREPIL-SPAWSPDGKKLAYVSFETGKPVIFVHELATG-E 246 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R +++ +F + AP +S++G+ L+++ +D +IY +DL S RLT+ I+ A Sbjct: 247 R--QKVADFPGLNSAPAWSADGRSLLMTLSRDGNAEIYRMDLASRNLTRLTDHWAIDTEA 304 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ I F SDR G QLY M+ G++ +RI+ + P SP GD + + Sbjct: 305 AWDHADRGIYFTSDRSGGPQLYHMERPGAEPRRITFGSRYN-ARPRPSPTGDYVYYVHQR 363 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F I + +E ++ + ++P+ +P+GR LI++ +++G+ + S D G Sbjct: 364 DSAFHIARTNLETGEETVITRTGSDESPSVAPNGRLLIYATRQNGEGVLTVVSAD-GGAA 422 Query: 428 ETLINTPAYASDPQW 442 +L + +P W Sbjct: 423 YSLPASEGEVREPAW 437 >gi|32699720|sp|Q9PC84|TOLB_XYLFA RecName: Full=Protein tolB; Flags: Precursor Length = 439 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 120/438 (27%), Positives = 217/438 (49%), Gaps = 28/438 (6%) Query: 20 LLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDL 73 L +L+G FP S + + N + IA D +G VS VV+ DL Sbjct: 8 LAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADL 67 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + ++ T+ I RF W +L +V GRV+ + RVE+ L+DV Sbjct: 68 NRSGQFRTLPLGQIIERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDV 126 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 ++ K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ +L Sbjct: 127 RNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYAL 186 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DG N + + S + +L P +SP+ +K+AY +++ +Y+ D + + + Sbjct: 187 MVADSDGYNPQTIVRSAEPLL-SPDWSPDGKKLAYVSFEKGG-SSIYIQDIATG-SRELV 243 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ ++S D Sbjct: 244 SSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDG 303 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASYFDPVWSPQGDLIAFTKFS 367 I F SDR G+ Q+Y + S G R++ SY D I + S Sbjct: 304 KFIYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATTSVSYDD-------KKIVVAQGS 356 Query: 368 GEKFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G + I +M + GS + +L ++P+++P+ ++++ ++ G LY++ + Sbjct: 357 GNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR--GVLYAVSADA 414 Query: 426 R-NETLINTPAYASDPQW 442 R + L++ + +P W Sbjct: 415 RVRQRLVSVDSDVREPAW 432 >gi|307545156|ref|YP_003897635.1| translocation protein TolB [Halomonas elongata DSM 2581] gi|307217180|emb|CBV42450.1| translocation protein TolB [Halomonas elongata DSM 2581] Length = 429 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/391 (27%), Positives = 207/391 (52%), Gaps = 23/391 (5%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++++V+ DL+RS F + + + +K ++ D + RF DW +L + +V GRV +EG+ + Sbjct: 54 LAQIVADDLERSGYFAPLERGAMFEKPSSSDEV-RFGDWKALDTRYMVVGRVSREGEG-V 111 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RV + L DV +++G+ +S R AH ISD ++++ITG +G F++RI +V+ Sbjct: 112 RVRYELMDVSGESRMLGETVTASSGQLRAAAHRISDQVFEAITGIRGAFSTRIAYVTSEG 171 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 V + L V D DG N + S D+ + P +SP+ +K+AY +++ E +Y+ + Sbjct: 172 VGDNMSFRLFVADADGHNSQQAL-SSDEPIMSPSWSPDGRKLAYVSFEGERPA-IYVQEV 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R K + +F + AP +S +G++ +++ +D +IY++D+ S +R+TN+ I Sbjct: 230 SSGRRVK-LTSFEGLNSAPSWSPDGRKLAVALSRDGQPEIYTIDIGSRDLQRITNSPSIE 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ++SPD +++ SDR G Q+Y G + +R++ + ++P G+ I Sbjct: 289 TEPAWSPDGRSLIYTSDRSGGPQIYRQALGGGEPERLTYTGNYNA-RARFAPDGEAIFLI 347 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQ---APTWSPSGRSLIFSRKKDGDTGSK--LY 419 + + D + LVE S+ Q +P+ +P+G +IF+ ++ GS+ L Sbjct: 348 HKGNNGYQVARQDLDNGR---LVEISDAQQAESPSVAPNGTMVIFATQQ----GSRGVLG 400 Query: 420 SIDLNGRNETLINTPAYASD---PQWVGFMD 447 ++ +GR PA D P W F++ Sbjct: 401 AVSADGRAS--FRLPAAQGDVREPAWSPFLN 429 >gi|224826140|ref|ZP_03699243.1| Tol-Pal system beta propeller repeat protein TolB [Lutiella nitroferrum 2002] gi|224601777|gb|EEG07957.1| Tol-Pal system beta propeller repeat protein TolB [Lutiella nitroferrum 2002] Length = 428 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/385 (28%), Positives = 195/385 (50%), Gaps = 19/385 (4%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++ ++ DL + F ++ S P I + W GAQ L G+V G ++ Sbjct: 56 LTPIIRNDLLLTGAFRMVDPASAANPAFEPAQI-NYPAWRGAGAQSLAIGKVEAAG-GQV 113 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 ++ FRL+D +KQ+ +F +P R++AHTI+D IY++ITG+KG FN+RI +V +S Sbjct: 114 KISFRLFDAAQQKQLTSGEFTVTPERSREVAHTIADMIYEAITGQKGIFNTRISYVLKSG 173 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 +++ V D DG + + S++ I+ P +SP+ K+AY +++ + V + Sbjct: 174 RDYLLQ----VADMDGRGAQTILRSKEPII-SPAWSPDGGKIAYVSFEAKK--PVVWVQN 226 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + + NF+ AP +S +G++ + + IY +D R+T++ I+ Sbjct: 227 LVTGQRRIVANFKGSNSAPAWSPDGRQLAVVLTTSGTSQIYVIDANGGGARRVTHSNAID 286 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAF 363 ++SPD SQ+ F SDR G Q+YV G +R+S D SY P SP G +++ Sbjct: 287 TEPAWSPDGSQLYFVSDRAGGPQIYVQPVAGGSARRLSWD--GSYNVSPKVSPDGRTLSY 344 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + G +F + V R+L + + P+++P+ R ++F+ + G S LY+ Sbjct: 345 IRRQGGQFRVVVQDLASGDNRVLSSGAYNERPSFAPNSRMVLFASDEGGR--SVLYAATP 402 Query: 424 NGRNE---TLINTPAYASDPQWVGF 445 +G ++ +IN DP W F Sbjct: 403 DGSSKVRLAVIN--GDVQDPAWGPF 425 >gi|294341055|emb|CAZ89450.1| putative Protein tolB precursor [Thiomonas sp. 3As] Length = 438 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/416 (27%), Positives = 198/416 (47%), Gaps = 19/416 (4%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF---NLISQDSF 87 S A KV + + + + F ++ ++++V DL RS +F NL Q Sbjct: 31 SAQAQFKVDVSGIGATQIPVGIGAFRDLNHCPQPIADIVRADLTRSGLFAVSNLGGQTLT 90 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +Q P + W S + + G V + R +V+FRLWD + + G Sbjct: 91 EQ------GPPNYAAWRSQNLEAVAGGSVAQVTGGRWQVQFRLWDAVKQADLGGLALTVM 144 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P R AH ISD IYQ +TG++G F +RI ++++ +G SL + D DGAN ++ Sbjct: 145 PGDLRLAAHKISDYIYQKLTGQRGVFATRITYITK---AGQHNFSLNIADSDGANPQFAL 201 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SR+ +L P +SPN Q++AY +++ + V++ D R A + + NF+ AP FS Sbjct: 202 RSREPLL-SPVWSPNGQELAYVSFETGKPV-VFMQDVR-SGARRAVANFKGSNSAPAFSP 258 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + + IY + + +L + I+ ++SPD + F SDR+G Q Sbjct: 259 DGGTLAVVLTLTGRSQIYLMPSKGGTPRQLMRSYSIDTEPTFSPDGQSLYFVSDRDGGPQ 318 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + NG +RI+ + P SP G +A+ G + + + + +LL Sbjct: 319 VYKVGLNGGSVQRITYSGGYN-VSPAISPDGKTLAYISQQGNSYQLWSINLATNATQLLD 377 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 + S+ P+++P+G+ +++S G G L ++ ++GR TL +P W Sbjct: 378 DGSDCGHPSFAPNGQIVLYS--AGGRGGEVLKTVSIDGRVRSTLSQAGVQVREPSW 431 >gi|296136886|ref|YP_003644128.1| Tol-Pal system beta propeller repeat protein TolB [Thiomonas intermedia K12] gi|295797008|gb|ADG31798.1| Tol-Pal system beta propeller repeat protein TolB [Thiomonas intermedia K12] Length = 438 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/416 (27%), Positives = 198/416 (47%), Gaps = 19/416 (4%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF---NLISQDSF 87 S A KV + + + + F ++ ++++V DL RS +F NL Q Sbjct: 31 SAQAQFKVDVSGIGATQIPVGIGAFRDLNHCPQPIADIVRADLTRSGLFAVSNLGGQTLT 90 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +Q P + W S + + G V + R +V+FRLWD + + G Sbjct: 91 EQ------GPPNYAAWRSQNLEAVAGGSVAQVTGGRWQVQFRLWDAVKQADLGGLALTVM 144 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P R AH ISD IYQ +TG++G F +RI ++++ +G SL + D DGAN ++ Sbjct: 145 PGDLRLAAHKISDYIYQKLTGQRGVFATRITYITK---AGQHNFSLNIADSDGANPQFAL 201 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SR+ +L P +SPN Q++AY +++ + V++ D R A + + NF+ AP FS Sbjct: 202 RSREPLL-SPVWSPNGQELAYVSFETGKPV-VFMQDVR-SGARRAVANFKGSNSAPAFSP 258 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + + IY + + +L + I+ ++SPD + F SDR+G Q Sbjct: 259 DGGTLAVVLTLTGRSQIYLMPSKGGTPRQLMRSYSIDTEPTFSPDGQSLYFVSDRDGGPQ 318 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + NG +RI+ + P SP G +A+ G + + + + +LL Sbjct: 319 VYKVGLNGGSVQRITYSGGYN-VSPAISPDGKTLAYISQQGNSYQLWSINLATNATQLLD 377 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 + S+ P+++P+G+ +++S G G L ++ ++GR TL +P W Sbjct: 378 DGSDCGHPSFAPNGQIVLYS--AGGRGGEVLKTVSIDGRVRSTLSQAGVQVREPSW 431 >gi|121604951|ref|YP_982280.1| translocation protein TolB [Polaromonas naphthalenivorans CJ2] gi|166229983|sp|A1VNY1|TOLB_POLNA RecName: Full=Protein tolB; Flags: Precursor gi|120593920|gb|ABM37359.1| TolB, N-terminal domain protein [Polaromonas naphthalenivorans CJ2] Length = 429 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 110/407 (27%), Positives = 199/407 (48%), Gaps = 15/407 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 L+ G F S A +V + + + IA F + K+ +V DL+RS +F Sbjct: 15 LLAAGAFSSMSAFAQFRVEVSGVGMTQLPIAIAPFRGEAQSPQKIGSIVKADLERSGMFR 74 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + + + ++ P W GA +VTG V R V RLWDV + + Sbjct: 75 GVDAGGV---VADENTRPDLASWRQKGADAMVTGSVSPLADGRFDVRLRLWDVVREQDLG 131 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G+ + + + R AH +SD +Y+ +TGEKG F++RI +V+++ + +L V D DG Sbjct: 132 GQSYTVTKSDLRLSAHRVSDFVYEKLTGEKGIFSTRIAYVTKAGQ----RYTLWVADSDG 187 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + + S + I+ P +SP+ ++AY +++ + +Y D + + + NFR Sbjct: 188 ESAQSALASPEPII-SPAWSPSGAQLAYVSFESRKPV-IYSHDVATGKR-RLLANFRGSN 244 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 AP +S +G + + ++ + IYS+ L +RLT + I+ ++SPD I F S Sbjct: 245 SAPAWSPDGSQLVATLSQAGGSQIYSIGLNGGDPKRLTQSSSIDTEPAFSPDGRLIYFVS 304 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 DR G Q+Y M G + +R++ SY PV SP G +A+ G F + VM+ Sbjct: 305 DRGGSPQIYRMSPAGGNAERVT--FTGSYNISPVVSPDGRWLAYVSRVGGGFKLHVMELS 362 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + S ++P+++P+ R ++++ ++ G L + L+G+ Sbjct: 363 TGTVTSITDTSADESPSFAPNSRLIVYATQQQGK--EALMTTTLDGK 407 >gi|171463097|ref|YP_001797210.1| Tol-Pal system beta propeller repeat protein TolB [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192635|gb|ACB43596.1| Tol-Pal system beta propeller repeat protein TolB [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 403 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/405 (27%), Positives = 200/405 (49%), Gaps = 23/405 (5%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA +F ++L V+E++ +DL RS F + + + D P ++ W + GA Sbjct: 15 IAVMRFKDENKLLTSVTEIIRQDLARSGYFKNTENGN---AVESDDGTPNYKSWAARGAD 71 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 LV G V++ G + + ++L+D++ + G SS + R AH I+DDI + GE Sbjct: 72 ALVVGSVVQTGGSQFEIHYKLFDIRKSVSLGGLNLNSSADNLRAAAHKIADDIIYKLLGE 131 Query: 170 KGDFNSRILFVSESVVSGIIKNS----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +G VS + +S +IK+ L + D DG NIR S + I+ P +SP+ +K Sbjct: 132 RG--------VSSTRLSYVIKDGKRYRLVISDADGQNIRNAMNSSEPII-SPSWSPDGKK 182 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 VAY +++D + +Y+ + R+ + N + AP +S +GK+ IS+ KD IY Sbjct: 183 VAYVSFEDRKPV-IYVHELATGRSIS-LSNQKGNNSAPAWSPDGKKLAISLSKDGNTQIY 240 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD- 344 ++ RLT I+ YS D I F SDR G Q+Y M ++G + + + Sbjct: 241 GINADGTGLHRLTRGNTIDTEPQYSADGRYIYFTSDRGGNPQIYRMSADGEQAEGVKRVT 300 Query: 345 -KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 K+ P SP G +A+ G + + ++ + L + ++ ++P+++ +GR Sbjct: 301 FKQGFVTSPRISPDGKYLAYIANIGGAYRLYILNLATGDAQALTDGTSDESPSFAANGRY 360 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFMD 447 +++S K G L ++ ++G ++ +++ P P W FMD Sbjct: 361 VLYSTKVGGK--RILAAVSVDGNSKRVLSIPGSDVRQPSWGPFMD 403 >gi|170730224|ref|YP_001775657.1| translocation protein TolB [Xylella fastidiosa M12] gi|226705900|sp|B0U2E8|TOLB_XYLFM RecName: Full=Protein tolB; Flags: Precursor gi|167965017|gb|ACA12027.1| TolB protein precursor [Xylella fastidiosa M12] Length = 439 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 120/438 (27%), Positives = 215/438 (49%), Gaps = 28/438 (6%) Query: 20 LLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDL 73 L +L+G FP S + + N + IA D G VS VV+ DL Sbjct: 8 LAILVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSAGAPATDVSGVVAADL 67 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + ++ T+ I RF W +L +V GRV+ + RVE+ L+DV Sbjct: 68 NRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDV 126 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 ++ K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ +L Sbjct: 127 RNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYAL 186 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DG N + + S + +L P +SP+ +K+AY +++ +Y+ D + + + Sbjct: 187 MVADSDGYNPQTIVRSAEPLL-SPDWSPDGKKLAYVSFEKGGS-SIYIQDIATG-SRELV 243 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ +S D Sbjct: 244 SSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPVWSSDG 303 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASYFDPVWSPQGDLIAFTKFS 367 I F SDR G+ Q+Y + S G R++ SY D I + S Sbjct: 304 KFIYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATASVSYDD-------KKIVVAQGS 356 Query: 368 GEKFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G + I +M + GS + +L ++P+++P+ ++++ ++ G LY++ + Sbjct: 357 GNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR--GVLYAVSADA 414 Query: 426 R-NETLINTPAYASDPQW 442 R + L++ + +P W Sbjct: 415 RVRQRLVSVDSDVREPAW 432 >gi|15838495|ref|NP_299183.1| translocation protein TolB [Xylella fastidiosa 9a5c] gi|9106990|gb|AAF84703.1|AE004009_10 TolB protein precursor [Xylella fastidiosa 9a5c] Length = 430 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 119/436 (27%), Positives = 216/436 (49%), Gaps = 28/436 (6%) Query: 22 VLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDLQR 75 +L+G FP S + + N + IA D +G VS VV+ DL R Sbjct: 1 MLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADLNR 60 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + ++ T+ I RF W +L +V GRV+ + RVE+ L+DV++ Sbjct: 61 SGQFRTLPLGQIIERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDVRN 119 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ +L V Sbjct: 120 GKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYALMV 179 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N + + S + +L P +SP+ +K+AY +++ +Y+ D + + + + Sbjct: 180 ADSDGYNPQTIVRSAEPLL-SPDWSPDGKKLAYVSFEKGG-SSIYIQDIATG-SRELVSS 236 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ ++S D Sbjct: 237 FRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDGKF 296 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASYFDPVWSPQGDLIAFTKFSGE 369 I F SDR G+ Q+Y + S G R++ SY D I + SG Sbjct: 297 IYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATTSVSYDD-------KKIVVAQGSGN 349 Query: 370 KFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR- 426 + I +M + GS + +L ++P+++P+ ++++ ++ G LY++ + R Sbjct: 350 VYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR--GVLYAVSADARV 407 Query: 427 NETLINTPAYASDPQW 442 + L++ + +P W Sbjct: 408 RQRLVSVDSDVREPAW 423 >gi|319762343|ref|YP_004126280.1| tol-pal system beta propeller repeat protein tolb [Alicycliphilus denitrificans BC] gi|330825736|ref|YP_004389039.1| Tol-Pal system beta propeller repeat-containing protein TolB [Alicycliphilus denitrificans K601] gi|317116904|gb|ADU99392.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus denitrificans BC] gi|329311108|gb|AEB85523.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus denitrificans K601] Length = 440 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 110/383 (28%), Positives = 185/383 (48%), Gaps = 14/383 (3%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+S +V DL+RS F + T S P W A L TG V + R Sbjct: 68 KISAIVQADLERSGRFTGVDATGVALDET---SRPDLSQWRQRKADALSTGSVTRLADGR 124 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FRLWDV + + G+ F + A R +AH I+D IY+ +TGE+G F++RI +V++ Sbjct: 125 FDVRFRLWDVVKGQDLGGQSFTVTQADLRLVAHRIADFIYEKLTGERGVFSTRIAYVTKV 184 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + SL V D DG N + S + I+ P +SP+ ++AY +++ + VY+ D Sbjct: 185 GA----RYSLWVADADGENAQSALSSPEPII-SPAWSPSGAQLAYVSFESRKPV-VYVHD 238 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + I NFR AP +S +G+ +++ +D +Y++D RL + I Sbjct: 239 VATGRR-RLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGI 297 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + ++S D I F SDR G Q+Y + + G + +R++ + A P SP G +A+ Sbjct: 298 DTEPAFSSDGRSIYFVSDRGGSPQIYRVAAGGGNAERVTFNG-AYNISPAISPDGQWLAY 356 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + VM L + S ++P+++P+ R ++++ ++ G L + L Sbjct: 357 ISRVGGAFKLHVMDLRSGSVTALTDSSADESPSFAPNSRLILYATQQQGR--EALMTTTL 414 Query: 424 NGR-NETLINTPAYASDPQWVGF 445 +G+ L +P W F Sbjct: 415 DGKIKARLAGQGGDIREPDWGPF 437 >gi|317402474|gb|EFV83042.1| TolB protein [Achromobacter xylosoxidans C54] Length = 440 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 117/420 (27%), Positives = 204/420 (48%), Gaps = 19/420 (4%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P V ++ A PV+IA F D G ++EV+ DL R+ F LIS Sbjct: 35 PAQAQLRVDISGTGATQYPVAIA--DFAVDDAHGRALAEVIRADLTRTGQFRLISAAGSG 92 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + +P + DW + GA + G +++ R V +RL D + Q+ G F + Sbjct: 93 LNVDSPIA---HDDWRAKGADFIAYGSIVRGNDGRYDVRYRLADTVKKGQLDGVAFSGTE 149 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + Sbjct: 150 QELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKQGAT----YELQVADADGQNPQVALR 205 Query: 209 SRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SR+ I+ P +SP+ K+AY +++ + ++ V+ + T R P + NF+ AP +S Sbjct: 206 SREPII-SPSWSPDGSKLAYVSFESGKPVVYVHTLATSA-RVP--VANFKGNNSAPGWSP 261 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G + +++ +D IY V + +R+T + I+ S++PD I+F SDR G Sbjct: 262 DGTQLAVALTRDGLSQIYIVSAAGGSNMKRVTRSPGIDTEPSFTPDGRSIIFTSDRSGGP 321 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+Y +G D +R++ + + P SP G + + F I + E LL Sbjct: 322 QIYQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSENLL 380 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 381 TDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 438 >gi|254521375|ref|ZP_05133430.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas sp. SKA14] gi|219718966|gb|EED37491.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas sp. SKA14] Length = 439 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 197/382 (51%), Gaps = 12/382 (3%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+ VV DL+RS F + + +K I +F W +L +V GRV+ G Sbjct: 59 VAGVVRADLERSGQFRTLPEAQIVEKPVRGGDI-QFATWRALKQNYIVVGRVLDAGAGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 ++ +L V D DG N + + S + +L P +SP+ K+AY +++ + +Y+ + Sbjct: 178 KGDAMRYALMVADSDGYNPQTIVRSAEPLL-SPSWSPDGSKLAYVSFERGNSA-IYIQNI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ Sbjct: 236 ATG-ARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNHFAID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAF 363 +++PD S + F SDR G+ Q+Y + + G +R++ + +Y P S G IA Sbjct: 295 TEPTWAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVT--FQGNYNAKPTVSYDGKKIAV 352 Query: 364 TKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + SG + I +M R L S ++P+++P+ ++++ ++ G LY++ Sbjct: 353 AQGSGNSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGR--GVLYAV 410 Query: 422 DLNGR-NETLINTPAYASDPQW 442 + R + L+ +P W Sbjct: 411 SADARVRQRLVLADGDVREPAW 432 >gi|197119875|ref|YP_002140302.1| TolB-like biopolymer transport periplasmic beta-propeller repeat protein [Geobacter bemidjiensis Bem] gi|197089235|gb|ACH40506.1| TolB-related biopolymer transport periplasmic beta-propeller repeat protein [Geobacter bemidjiensis Bem] Length = 407 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 116/400 (29%), Positives = 198/400 (49%), Gaps = 27/400 (6%) Query: 46 SPVSIAFTKF-VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWN 104 +PVS F L G+V VS++L S++F + + P + + Sbjct: 28 APVSRKLKLFPAPATGLAGQVPPEVSREL--SELFGM------DLGLAGPFEV----SGD 75 Query: 105 SLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA +++ +G + + +E RL D ++I K++ S R++ H SD++ + Sbjct: 76 GAGADLILKSSYSAQGGN-ITLECRLVDRVLNREITAKRYSGSAKELRRMGHAFSDEVLR 134 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 ++TGEKG F +I +V+++ SG + VMD DG N + LT + I P F+P+ + Sbjct: 135 AVTGEKGPFTGKIAYVTKA--SG--NKEIFVMDYDGHNPQRLT-NNGSINLNPDFAPSGK 189 Query: 225 KVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 ++ Y +Y + D+ R L R R G + +S +G + + + KD Sbjct: 190 EIIYTSYKKGNPDLYRRELFTGLEARISSRSG----LNATGAYSPDGSKIAMVMSKDGNS 245 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY + + RLTN I++S ++SPD S+IVF SDR GK Q+++M ++G + R++ Sbjct: 246 EIYLISREGKELARLTNNHAIDVSPAWSPDGSRIVFVSDRLGKPQVFIMNADGGNVHRLT 305 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + A P WSP+GD I + + G F I + DG+Q+ L + + P +SP GR Sbjct: 306 ANG-AYNVTPRWSPKGDRIVYARQGGGGFQIYAINADGTQDTQLTSAGSNEHPRFSPDGR 364 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++FS +DG L D +G+ N + S P W Sbjct: 365 FIVFSSTRDGAEAIYLMRADGSGQTRVSPNK-SQNSHPTW 403 >gi|82523888|emb|CAI78611.1| tolB protein [uncultured delta proteobacterium] Length = 437 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 207/393 (52%), Gaps = 25/393 (6%) Query: 65 VSEVVSKDLQRSDVFNLISQDSF-----KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 + +V+ D++ S F +I+ S+ KQ I + I F DW+++GA++++T I Sbjct: 59 LEKVLQDDIKYSSFFRIITPASYLVDPKKQGIKKKEII--FSDWSTIGAELIITTG-ITV 115 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 ++L +E RL+DV ++ ++G+++ + A RK HT D+I +++TG G+F ++I F Sbjct: 116 INNKLNIELRLFDVFSKELLLGRQYNVTMAEARKSIHTFMDEIIKTMTGYPGNFLTKIAF 175 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDIL 237 V + +KN + +D DG N +T + I P + N + Y +Y + D+ Sbjct: 176 VKSTAG---VKN-IYQVDFDGYNPTPITNFK-SITLGPSWGKNSNILFYISYFKGNPDLY 230 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 L+ RI +I F+ + L+ +S + S+ KD DIY ++ N RL Sbjct: 231 LHNLLTGRI----YKISGFKGINLSASWSDKHQMIATSLSKDGYPDIYLMNTNGNIISRL 286 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSP 356 T + I+IS ++SPD +I F SDR G +Y M SNG + +R++ E +Y P WSP Sbjct: 287 TRSNSIDISPTWSPDGKKIAFVSDRGGNPNIYTMNSNGQNVRRLTF--EGTYNTSPDWSP 344 Query: 357 QGDLIAFT-KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 +GD I FT + + F I ++ DGS ++ ++ + P+WSP GR +++S +G + Sbjct: 345 KGDNIVFTGRDNLGYFQIYTIRPDGSGLCQITFNSADNEEPSWSPDGRFIVYSSTIEGKS 404 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 G + + GR + LIN + P W +D Sbjct: 405 GIYIMLFNGTGRRK-LINLNGEQTYPVWSPRLD 436 >gi|149375117|ref|ZP_01892889.1| Periplasmic component of the Tol biopolymer transport system [Marinobacter algicola DG893] gi|149360481|gb|EDM48933.1| Periplasmic component of the Tol biopolymer transport system [Marinobacter algicola DG893] Length = 427 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 115/430 (26%), Positives = 212/430 (49%), Gaps = 15/430 (3%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL--GGKVSEVVSKDLQ 74 L +L+V+IG + HA + + S + +A F ++ G KVS +V DL Sbjct: 4 LLMLMVMIGS--SPAAHAELLIRITEGADSAIPVAVVPFAETGQIPSGDKVSSIVRDDLT 61 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S F + + ++ D + F+DW LG + ++ G++ + G D++ + L+DV Sbjct: 62 MSGEFKPLPPEKMLSLPSSGDEV-YFRDWRLLGQRYVLVGQLTRTG-DKIEARYELFDVN 119 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 ++I+G SS S R +AH ISD +Y++ITG G F++++ +V+ G L Sbjct: 120 REERILGATASSSVNSTRSLAHHISDKVYEAITGVPGAFSTKLAYVTLQRSGGKALYRLQ 179 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG R S D+ + P +SP+ +++AY +++ +Y+ + K I Sbjct: 180 VSDVDGKRARVRLES-DEPILSPAWSPDGKRLAYVSFETGKPA-IYIHELSSGNRTK-IA 236 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +FR + AP +S +G+ L+++ KD ++Y +D+QS + +RLT+ I+ ++ Sbjct: 237 DFRGLNSAPAWSPDGRSLLLTLSKDGNAEVYKMDIQSRSLKRLTSHWSIDTEPTWDHTGK 296 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP--QGDLIAFTKFSGEKFA 372 F SDR G Q+Y S ++ +RI+ S ++ P G + + + F Sbjct: 297 GFFFTSDRSGGPQIYHKSSESAEPRRITF---GSRYNARPRPDNDGKYVYYVHQRDKAFH 353 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 I +E +L + ++P+ SP+GR LI++ K+ GD+ + + D G +L Sbjct: 354 IARTNLQTEEETILTRTESDESPSVSPNGRMLIYATKQGGDSVLTVIAAD-GGAAYSLPA 412 Query: 433 TPAYASDPQW 442 + +P W Sbjct: 413 SEGDVREPAW 422 >gi|30248242|ref|NP_840312.1| translocation protein TolB [Nitrosomonas europaea ATCC 19718] gi|32699691|sp|Q82XN9|TOLB_NITEU RecName: Full=Protein tolB; Flags: Precursor gi|30180127|emb|CAD84129.1| probable tolB-related transport protein [Nitrosomonas europaea ATCC 19718] Length = 425 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 109/400 (27%), Positives = 196/400 (49%), Gaps = 11/400 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ L VL+ + TS A + + + + IA F L +S +VS D Sbjct: 1 MRNFLYCTGVLLLLWMSTSSQAALNIEIFGGGTNKIPIAIAPFNGERGLPQSISAIVSAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+R+ +F L+ D+ P+ I R+ DW GA LV G + R+ V FRL D Sbjct: 61 LERTGLFKLV--DTLGLTSQEPEQI-RYIDWQGRGASALVVGSISPLPDGRIDVRFRLLD 117 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + Q+ G + R AH I+D +Y+++TGE G F++RI FV + + + Sbjct: 118 VVKQTQLTGFSGAVTTEQLRAFAHRIADIVYETLTGEPGAFSTRIAFVRKQGS----QYA 173 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG N R L + I+ P +SP+ ++AY +++ + V + T R K Sbjct: 174 LQVSDYDGFNARSLIEYTEPII-SPAWSPDGSRIAYTSFEKKK--PVVYVQTLATRERKA 230 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + NF+ AP +S +G + + + IY ++ + +R++ + I+ S+SPD Sbjct: 231 VANFKGSNSAPAWSPDGSKLAVVLTLHGGSQIYLINADGSGLQRISQSPGIDTEPSFSPD 290 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++F SDR G Q+Y M +G +R++ + + + P +SP G + + +F Sbjct: 291 GRWLMFTSDRGGSPQIYRMPVSGGVAERMTFEGDYN-VSPHYSPDGKRFVYIHRNAGRFN 349 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + + Q +LL + + ++P++SP+ R ++++ + G Sbjct: 350 VAIQDLSTRQMQLLTDSNFDESPSFSPNNRMILYTTEIGG 389 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 13/160 (8%) Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 R+ + ++ ++ S++I F + + L V +G + + + + E P W Sbjct: 141 HRIADIVYETLTGEPGAFSTRIAFVRKQGSQYALQVSDYDGFNARSLIEYTEP-IISPAW 199 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDG 412 SP G IA+T F +K + V + ++ER V + + AP WSP G L G Sbjct: 200 SPDGSRIAYTSFEKKKPVVYV-QTLATRERKAVANFKGSNSAPAWSPDGSKLAVVLTLHG 258 Query: 413 DTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 GS++Y I+ +G I+ P+++ D +W+ F Sbjct: 259 --GSQIYLINADGSGLQRISQSPGIDTEPSFSPDGRWLMF 296 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + +++ DG+ ++ ++ S I EP FSP+ + + + T D ++Y M A + Sbjct: 262 IYLINADGSGLQRISQS-PGIDTEPSFSPDGRWLMF-TSDRGGSPQIYRMPVSGGVAERM 319 Query: 253 I--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 G++ ++P +S +GKR + + ++ DL + + LT++ F + S S+S Sbjct: 320 TFEGDYN---VSPHYSPDGKRFVYIHRNAGRFNVAIQDLSTRQMQLLTDSNF-DESPSFS 375 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 P++ I++ ++ G+ L + S+G + R+SQ+ + + VW P Sbjct: 376 PNNRMILYTTEIGGRGILSTVSSDGQAKSRLSQEA-GNIREAVWGP 420 >gi|78485243|ref|YP_391168.1| TolB-like [Thiomicrospira crunogena XCL-2] gi|119371064|sp|Q31H79|TOLB_THICR RecName: Full=Protein tolB; Flags: Precursor gi|78363529|gb|ABB41494.1| TolB protein [Thiomicrospira crunogena XCL-2] Length = 432 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/407 (27%), Positives = 209/407 (51%), Gaps = 20/407 (4%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG-------KVSEVVSKDLQRSDVF 79 + TS++A + + + ++ + V IA F E G ++ +V DL RS F Sbjct: 14 MWSTSVYADLTIQIDQSSDNAVPIALVPF----EWKGAQLHPPQNITSIVGNDLLRSGKF 69 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + + + D I +Q W LG L+ GR+ +E ++E R D+ ++Q+ Sbjct: 70 KAVDEAKLPSRPKTLDDIDFYQ-WKQLGVDNLLMGRITEEANGTYQIEMRFVDLLRKEQV 128 Query: 140 IGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 IGK++ S + R++AH +SD IY+ +TG +G FN+R+ +V+ V G + SL V D Sbjct: 129 IGKRWSGISKSLLRQVAHKMSDLIYEELTGIRGAFNTRMAYVTVRNVKGKKQYSLEVADS 188 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI-GNFR 257 DG N + + S I+ P +SP+ Q +AY ++++ R ++ +D ++I F+ Sbjct: 189 DGYNSQPILRSSLPIM-SPSWSPDGQHLAYVSFENG---RSQIVLQSLDGKSRQIIAKFK 244 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + AP +S +GK+ +++ KD + D+Y +D+++ RLT I A ++P+ + Sbjct: 245 GINGAPAWSPDGKKLALTLSKDGSADVYIMDMKTRKLRRLTRNWAIETEAVWAPNGHSLF 304 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G+ Q++ + + + +RIS + +P SP G +A +G F I V+ Sbjct: 305 FNSDRRGQPQIFQVFLDTGEMRRISYVGRYNA-NPAISPDGRYVAMVHANG-GFHIAVLD 362 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +L + ++PT+SP+G ++++ + G + S++ N Sbjct: 363 LYNEDFNILTKTYLDESPTFSPNGEMILYAMNQGGQGKLAVVSVNSN 409 >gi|121607999|ref|YP_995806.1| translocation protein TolB [Verminephrobacter eiseniae EF01-2] gi|121552639|gb|ABM56788.1| TolB, N-terminal domain protein [Verminephrobacter eiseniae EF01-2] Length = 421 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 192/411 (46%), Gaps = 12/411 (2%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK-QKITNPD 95 +V + + IA F + K++ +V DL+RS F + D + T PD Sbjct: 18 RVEVTGVGLTQLPIALAPFRGQAQAPQKMAAIVQADLERSGQFRAVDADGAALDETTRPD 77 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 W A L+ G V R V FRLWDV + + G+ F +P R +A Sbjct: 78 ----LALWRKKNADSLLAGSVALSSNGRFDVRFRLWDVVKGQDLGGQSFLVTPGDLRLVA 133 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D I++ +TGE+G F++RI +V+ + + SL V D DG N + S + I+ Sbjct: 134 HRIADFIHEKLTGERGVFSTRIAYVTRTTNRTGARYSLWVADADGENAQSALSSPESII- 192 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP ++AY +++ + VY+ D R + I NFR AP ++ +G+ ++ Sbjct: 193 SPAWSPLGDQLAYVSFESRKPV-VYVHDVASGRR-RLIANFRGSNSAPAWAPDGRTLAVT 250 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +D +Y++D RL + I+ ++S D I F SDR G Q+Y + +G Sbjct: 251 LSRDGGSQLYTIDANGGEPRRLMQSAGIDTEPAFSGDGRSIYFVSDRGGAPQIYKVGVSG 310 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 D +R++ + P SP G +A+ +G F + VM + + + + P Sbjct: 311 GDAERVTFTGNYN-ISPSVSPDGRWLAYISRAGGAFKLQVMDLVSGSVNAITDTTADENP 369 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 +++P+ R ++++ ++ G L + L+G+ L +P W F Sbjct: 370 SFAPNSRLIVYATEQQGR--EALMTTTLDGKIKARLAGQAGDIREPDWGPF 418 >gi|329904215|ref|ZP_08273698.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480] gi|327548111|gb|EGF32832.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480] Length = 421 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/436 (27%), Positives = 206/436 (47%), Gaps = 18/436 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK L L+G T+ HA ++V + + IA F +VS ++ D Sbjct: 1 MKKTFFSTLALLGLVLATAAHAQLRVDIAGVGANQIPIAIATFADESIAPAQVSAIIKAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F +I + + S + DW S GA LV G V + R V ++L D Sbjct: 61 LMRSGYFKIIDAGTMSET-----SEINYPDWKSRGADALVVGSVQRLADGRFDVRYKLLD 115 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + + R AH I+DDIY+ +TG +G F +RI +V++S + Sbjct: 116 MIKSAPLSALSLTAPEGRTRVTAHKIADDIYEKLTGVRGAFATRIAYVTKSGK----EYR 171 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG + S + I+ P +SP+ +VAY +++++ + VY+ + + R Sbjct: 172 LEVADADGEDTNVALRSNEPII-SPAWSPDGTRVAYVSFENKKPV-VYVQNL-VTRQRTV 228 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + N++ AP +S +G R I++ +D Y V+ RLT++ I+ +S D Sbjct: 229 LANYKGSNSAPSWSPDGNRLAIALSRDGLTQSYIVNADGTGLRRLTSSSGIDTEPQFSAD 288 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKF 371 I F SDR G Q+Y M +G D +R++ + SY P SP G +A+ F Sbjct: 289 GQSIYFTSDRSGGPQIYKMPVSGGDAQRVT--FKGSYNISPRVSPDGKTLAYISRRDSAF 346 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + M QE+ L + + ++P++SP+ + ++++ + G GS L + ++GR + + Sbjct: 347 QLYAMDLANGQEQRLSDSAKDESPSFSPNSKYIMYA-TESGRRGS-LAVVSVDGRVKQRL 404 Query: 432 NTPAY-ASDPQWVGFM 446 T A +P W F+ Sbjct: 405 TTQAGDIREPTWGPFI 420 >gi|194366891|ref|YP_002029501.1| translocation protein TolB [Stenotrophomonas maltophilia R551-3] gi|194349695|gb|ACF52818.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas maltophilia R551-3] Length = 439 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 197/382 (51%), Gaps = 12/382 (3%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+ VV DL+RS F + + +K I +F W +L +V GRV+ G Sbjct: 59 VAGVVRADLERSGQFRTLPEAQIVEKPVRGGDI-QFATWRALKQNYIVVGRVLDAGAGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 ++ +L V D DG N + + S + +L P +SP+ K+AY +++ + +Y+ + Sbjct: 178 KGDAMRYALMVADSDGFNPQTIVRSAEPLL-SPSWSPDGSKLAYVSFERGNSA-IYIQNI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ Sbjct: 236 GTG-ARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLAQLTNHFAID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAF 363 +++PD S + F SDR G+ Q+Y + + G +R++ + +Y P S G IA Sbjct: 295 TEPTWAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVT--FQGNYNAKPSVSYDGKKIAV 352 Query: 364 TKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + SG + I +M R L S ++P+++P+ ++++ ++ G LY++ Sbjct: 353 AQGSGNSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGR--GVLYAV 410 Query: 422 DLNGR-NETLINTPAYASDPQW 442 + R + L+ +P W Sbjct: 411 SADARVRQRLVLADGDVREPAW 432 >gi|332286926|ref|YP_004418837.1| TolB protein [Pusillimonas sp. T7-7] gi|330430879|gb|AEC22213.1| TolB protein [Pusillimonas sp. T7-7] Length = 436 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/449 (26%), Positives = 214/449 (47%), Gaps = 25/449 (5%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 MSLR+ + + LL++ + P+ HA ++V + + IA F S D Sbjct: 11 MSLRWRA-----WALGIFLLVISLAAARPS--HAQLRVDISGVGATQYPIAIADF-SGDA 62 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 G VSEV+ DL RS F L++ N +S ++W GA L G + + G Sbjct: 63 QGQNVSEVIRADLTRSGQFRLVNATGAN---LNTESTIAHEEWRGRGADYLAYGSISQSG 119 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + V +RL D + Q+ G F + R+I+H I+D IY+ ITG +G F++RI +V Sbjct: 120 -GQYSVSYRLVDTVRKTQLDGVAFSGTEKELRRISHQIADRIYEKITGVRGVFSTRIAYV 178 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ + L + D DG N + + S+ I+ P +SP+ +++AY +++ + Sbjct: 179 LQTGNT----YELQIADADGQNPQVMLRSKQSII-SPAWSPDGKRLAYVSFETGKPVVYV 233 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + R P + NF+ AP +S NG+ I + +D IY+++ + R+ + Sbjct: 234 QTLSSGQRVP--LANFKGNNSAPAWSPNGQNLAIVLSRDSISQIYTINADGSGLRRVMRS 291 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGD 359 I+ Y+ D ++F SDR G +Y + +G D +RI+ + SY P SP G+ Sbjct: 292 PMIDTEPQYTADGGSLIFTSDRGGSPHIYKVPVSGGDAQRITFN--GSYNISPAISPDGN 349 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + F I + E+LL + ++P+++P+G +++S + G + + Sbjct: 350 SLVYVTRRNGAFRIALQNMGSGSEQLLTAGPDDESPSFAPNGMQILYSSVQGGRSVLAVT 409 Query: 420 SIDLNGR-NETLINTPAYASDPQWVGFMD 447 S+D GR +TL +P W F + Sbjct: 410 SVD--GRVRQTLSALNGKVREPTWGPFTN 436 >gi|308271861|emb|CBX28469.1| Protein tolB [uncultured Desulfobacterium sp.] Length = 450 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/390 (27%), Positives = 201/390 (51%), Gaps = 21/390 (5%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPR---FQDWNSLGAQVLVTGRV 116 +L K S+++S L + F ++ ++SF + + P++ + F++W ++GA++LVTG + Sbjct: 68 QLPKKASDMLSGMLDFTGYFKILDRESFLENLLKPETTLQTVDFRNWTTVGAELLVTGTI 127 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 G D L +E RL+D Q++GKK+ R I + +I +TG +G F++R Sbjct: 128 QANGND-LEIEMRLFDTVKANQLVGKKYKGGVNDLRHILRLFASEIVFCLTGNRGVFDTR 186 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDE 234 I FVS +G K + + D DG N+R T + LF P +S + Q +AY +Y + Sbjct: 187 IAFVS----TGSGKKEIYICDFDGTNVRQFTKNNSITLF-PAWSSDGQWIAYTSYLKGNP 241 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D+ + + I K+ N + +F A +S D+ DIY + Sbjct: 242 DLYIKNVSNNSISVVSKKGINITPSWMPGKFE---LAATLSFSGDQ--DIYLMTGTGKII 296 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++LTN+ ++S ++SPD ++ F S R G Q+Y+ + +++R++ + + P W Sbjct: 297 KKLTNSTGSDVSPTFSPDGKKMAFVSSRSGTPQIYIQDISTGNEQRLTFNGRYNT-QPCW 355 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP+G+ I ++ G K I ++ DG +L + + ++P WSP G ++FS ++G Sbjct: 356 SPKGNKIVYSGLDGGKHNIFIIALDGKDPVQLTHNEGDNESPFWSPDGSLIVFSSTREGP 415 Query: 414 TGSKLYSIDLNGRNET-LINTPAYASDPQW 442 S++Y + G ++ L + S+P+W Sbjct: 416 --SRIYVMTSYGTDQKRLFSISGEQSNPKW 443 >gi|88810552|ref|ZP_01125809.1| TolB [Nitrococcus mobilis Nb-231] gi|88792182|gb|EAR23292.1| TolB [Nitrococcus mobilis Nb-231] Length = 433 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 189/365 (51%), Gaps = 16/365 (4%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPR--FQDWNSLGAQVLVTGRVIKE---GKD 122 ++ DL R+ + + + K I +P ++ FQ+W LG LV G + + G Sbjct: 59 IIRDDLYRTGLLQPLPR---KDLIAHPATLEEVNFQNWRVLGVDNLVVGALASDPDSGYH 115 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 +V F L DV ++ GK++ P + R + HTISD I+QS+ G G FN++I +V Sbjct: 116 GYQVSFELLDVYKANRLTGKRYRVRPDALRTLGHTISDIIFQSLFGRPGGFNTQIAYVEI 175 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + L V D DG N + + S+ I+ P +SP++Q++ Y ++++ VY+ Sbjct: 176 ERNADQPVHKLIVADADGHNPQVILTSKAPIM-SPAWSPDRQRIGYVSFENGRS-EVYVQ 233 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + + +F + AP +S G R +++ KD +IY +DL S + ++T+ Sbjct: 234 EVASGKR-RTVASFNGINSAPAWSPQGNRLALTLSKDGNPEIYILDLASESLRQITHNSS 292 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLI 361 I+ ++P+ QI+F SDR G Q+Y + S G +R++ E SY P SP G L+ Sbjct: 293 IDTEPVWTPNGQQIIFTSDRGGSPQIYRLPSAGGKAERLT--FEGSYNARPTLSPDGRLL 350 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A KF I V+ R+L + ++P+++P+G +L++S G S+L ++ Sbjct: 351 ALVHREDGKFKIAVLDLQTRLTRVLTDGPLDESPSFAPNGATLLYSSVLGGK--SELATV 408 Query: 422 DLNGR 426 + GR Sbjct: 409 SIYGR 413 >gi|190575562|ref|YP_001973407.1| translocation protein TolB [Stenotrophomonas maltophilia K279a] gi|190013484|emb|CAQ47119.1| putative tolB protein precursor [Stenotrophomonas maltophilia K279a] Length = 439 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 197/382 (51%), Gaps = 12/382 (3%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+ VV DL+RS F + + +K I +F W +L +V GRV+ G Sbjct: 59 VAGVVRADLERSGQFRTLPEAQIVEKPVRGGDI-QFATWRALKQNYIVVGRVLDAGAGAY 117 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVE+ L+DV ++++G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 118 RVEYELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASG 177 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 ++ +L V D DG N + + S + +L P +SP+ K+AY +++ + +Y+ + Sbjct: 178 KGDAMRYALMVADSDGFNPQTIVRSAEPLL-SPSWSPDGSKLAYVSFERGNSA-IYIQNI 235 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ Sbjct: 236 GTG-ARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNHFAID 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAF 363 +++PD S + F SDR G+ Q+Y + + G +R++ + +Y P S G IA Sbjct: 295 TEPTWAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVT--FQGNYNAKPSVSYDGKKIAV 352 Query: 364 TKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + SG + I +M R L S ++P+++P+ ++++ ++ G LY++ Sbjct: 353 AQGSGNSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGR--GVLYAV 410 Query: 422 DLNGR-NETLINTPAYASDPQW 442 + R + L+ +P W Sbjct: 411 SADARVRQRLVLADGDVREPAW 432 >gi|237748799|ref|ZP_04579279.1| TolB [Oxalobacter formigenes OXCC13] gi|229380161|gb|EEO30252.1| TolB [Oxalobacter formigenes OXCC13] Length = 423 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/402 (27%), Positives = 207/402 (51%), Gaps = 21/402 (5%) Query: 47 PVSIA-FTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 P+ IA F+ + E KV+ ++ DL R+ +F LI D+ + + D ++ W + Sbjct: 40 PIVIAGFSNEATAPE---KVTNIIKADLARTGMFRLIGTDAIIGESADID----YRKWRA 92 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 GA LV G ++K ++ V +RL+D+ Q+ + + R AH I+DDIY+ Sbjct: 93 QGADALVVGTLVKSPDGKIDVRYRLFDLGKSSQLSALSMLAPASMTRVTAHKIADDIYEK 152 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TG KG F + I +V+++ + L + D DG N S++ I+ P +SP+ + Sbjct: 153 LTGHKGIFATCIAYVTKTGN----EYRLEIADADGGNKLVALRSKEPII-SPSWSPDGTR 207 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 VAY +++ + + VY+ + + R + N++ AP +S +G R +++ KD +Y Sbjct: 208 VAYVSFEAKKPV-VYVQNL-VTRQRTMVANYKGNNSAPSWSPDGSRLAVALSKDGYTQVY 265 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 +V A +++T T IN +SPD I F SDR G Q+Y + NG + +R++ Sbjct: 266 TVSANGGALKQITQTRSINTEPQFSPDGQWIYFTSDRSGGPQIYKVGVNGGNPQRVTFHG 325 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P SP G +A+ G + + ++ QE+ L + S ++P++SP+G+ ++ Sbjct: 326 NYN-ISPRVSPDGKSLAYISRRG-GYQLYLLDLTNGQEQRLSDTSRDESPSFSPNGQFIM 383 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFM 446 ++ +G G+ L + ++GR + ++ A +P W FM Sbjct: 384 YA--TNGGRGA-LSVVSVDGRVKQRLSMKASDVREPSWGPFM 422 >gi|92113976|ref|YP_573904.1| translocation protein TolB [Chromohalobacter salexigens DSM 3043] gi|119371041|sp|Q1QWF3|TOLB_CHRSD RecName: Full=Protein tolB; Flags: Precursor gi|91797066|gb|ABE59205.1| TolB-like protein [Chromohalobacter salexigens DSM 3043] Length = 428 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 117/439 (26%), Positives = 218/439 (49%), Gaps = 18/439 (4%) Query: 14 KINL---CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 ++NL LLL+L G HA + + + + IA + D+L VS +VS Sbjct: 3 RLNLWAASLLLMLCAGM----AHAELTIEITKGSDQAIPIAIVPMANGDDLPENVSRIVS 58 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+RS F + ++S + ++ + + +QDW L + LV G++ +G + R+++ L Sbjct: 59 NDLERSGRFEPLPRESLISRPSSSEEV-HYQDWQQLDSDYLVVGKIDNQGGE-YRIQYEL 116 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +V + +++G+ SS R AH ISD I++ ITG +G F++ I +V+ S V I Sbjct: 117 LNVNGQNRMLGEVVTSSRDQLRDSAHYISDQIFEEITGIRGAFSTSIAYVTASGVGDDID 176 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V D DG N + + S D+ + P +SP+ K+AY ++ + +Y+ + + Sbjct: 177 YALSVADADGHNSQQIL-SSDEPILSPAWSPDGGKLAYVSF-ETGRPGIYVQNLATGQR- 233 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 R+ +F + AP +S +G++ +S+ KD +IY +D+ S RLT + I+ ++ Sbjct: 234 VRLTSFEGINGAPAWSPDGRKLAMSLSKDGQPEIYVMDIASRDLRRLTQSDAIDTEPEWA 293 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGE 369 P+ ++F SDR G Q+Y +R++ SY +SP GD I Sbjct: 294 PNGRSLIFTSDRSGNPQIYRYDLGSGRAERLT--FTGSYNSRGRFSPDGDAIFMVTRDDS 351 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + D + +L + ++P+ +P+G +IF+ ++ T L ++ +G Sbjct: 352 GYHVARQDLDTDRMTILTDSDWDESPSVAPNGTMVIFATQE--GTRGVLGAVSADGSASF 409 Query: 430 LINTP-AYASDPQWVGFMD 447 + +P +P W F+D Sbjct: 410 RLPSPQGDVREPAWSPFLD 428 >gi|253997444|ref|YP_003049508.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylotenera mobilis JLW8] gi|253984123|gb|ACT48981.1| Tol-Pal system beta propeller repeat protein TolB [Methylotenera mobilis JLW8] Length = 433 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/434 (25%), Positives = 217/434 (50%), Gaps = 29/434 (6%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK--VSEVVSKDLQR 75 C L V + HA +++ + N + IA F + D + + ++ ++S DL+R Sbjct: 15 CTLTV--SAMMTSVSHAALEIEISGGNAQQLPIAIVPF-NQDAVKNQENIANIISADLRR 71 Query: 76 SDVFNLISQDSFKQKITNPDSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 S +F ++ K P +I ++ DW SL AQ + G+V +RL+V F+L DV Sbjct: 72 SGMFRVLETAGVASK---PSTIAQVKYSDWASLQAQAIAVGKVEALPGNRLKVSFQLGDV 128 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + Q+ + +P+ R AH I+D IYQ +TGE F SRI ++++S + +L Sbjct: 129 LKQTQLADMDYNITPSQLRMTAHKIADVIYQKLTGESAIFASRIAYINKSKG----RYAL 184 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED---ILRVYLMDTRIDRAP 250 V D DG N + + S + I+ P +SP+ K+AY +++ + ++ + RI Sbjct: 185 QVADADGVNPQTVVSSNEPII-SPAWSPDGTKIAYVSFEKKKPIIFVQSLMTGQRIT--- 240 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + +F+ AP ++ +G + I + +Y ++ + ++L+ + I+ +S Sbjct: 241 --LASFKGNNSAPAWAPDGSKLAIVLTHAANSQLYLINADGSGLKQLSKSSAIDTEPVWS 298 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGE 369 PD+ + F SDR G Q+Y + S G D +R++ D +Y P +SP G +A + G Sbjct: 299 PDAKWVYFSSDRGGSPQIYKVSSLGGDAQRVTFD--GTYNLSPRFSPDGKSLAMIRNDGG 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 ++ + + Q ++L E + ++P+++P+GR ++++ + G L ++ +GR + Sbjct: 357 RYRVALQNLATGQVQILSEGNQDESPSFAPNGRVVLYATRSAGR--GALAAVSADGRVKQ 414 Query: 429 TLINTPAYASDPQW 442 L + +P W Sbjct: 415 RLSESGGDIREPAW 428 >gi|182681495|ref|YP_001829655.1| translocation protein TolB [Xylella fastidiosa M23] gi|182631605|gb|ACB92381.1| Tol-Pal system beta propeller repeat protein TolB [Xylella fastidiosa M23] Length = 474 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 221/456 (48%), Gaps = 28/456 (6%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSI 58 S+ F +L+M L +L+G FP S + + N + IA Sbjct: 25 SIIFLKVIDLHMTKFPRWLAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYH 84 Query: 59 DELGGK---VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 D G VS VV+ DL RS F + ++ T+ I RF W +L +V GR Sbjct: 85 DSAGAPATDVSGVVAADLNRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGR 143 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V+ + RVE+ L+DV++ K+++G + ++ R +AH ++D IY+ ITG +G F + Sbjct: 144 VLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFT 203 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +V+ S G ++ +L V D DG N + + S + +L P +S + +K+AY +++ Sbjct: 204 RIAYVTASGSHGAMRYALMVADSDGYNPQTIVRSAEPLL-SPDWSSDGKKLAYVSFEKGG 262 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + + + +FR + AP F+ +G R +S+ + +IY +DL S Sbjct: 263 S-SIYIQDIATG-SRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLI 320 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASY 349 +LTN+ I+ +S D I F SDR G+ Q+Y + S G R++ SY Sbjct: 321 QLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQIYKVASVGGAATRVTFQGNYNASASVSY 380 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFS 407 D I + SG + I +M + GS + +L ++P+++P+ ++++ Sbjct: 381 DD-------KKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYA 433 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++ G LY++ + R + L++ + +P W Sbjct: 434 AREGGR--GVLYAVSADARVRQRLVSVDSDVREPAW 467 >gi|187479385|ref|YP_787410.1| translocation protein TolB [Bordetella avium 197N] gi|119371036|sp|Q2KV91|TOLB_BORA1 RecName: Full=Protein tolB; Flags: Precursor gi|115423972|emb|CAJ50525.1| TolB protein [Bordetella avium 197N] Length = 441 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 116/416 (27%), Positives = 200/416 (48%), Gaps = 17/416 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA ++V + + IA F D G ++EV+ DL R+ F LI+ + Sbjct: 38 HAQLRVDISGTGATQYPIAIADFAGDDVRGRALAEVIRADLTRTGQFRLINAAGSGLTVD 97 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 +P + + DW GA + G + + R + +RL D + Q+ G F + R Sbjct: 98 SPIN---YDDWRGRGADYVAYGSISQGADGRFEIRYRLADTVKKNQLDGVAFSGTEPELR 154 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +IAH I+D IY+ ITG +G F +RI +V + + L V D DG N + SR+ Sbjct: 155 RIAHQIADRIYEKITGVRGVFATRIAYVLKQGNT----YELQVADADGQNPQVALRSREP 210 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ K+AY ++ + VY+ T R+ + NF+ AP +S +G + Sbjct: 211 II-SPTWSPDGSKLAYVSFHSGKPV-VYVQ-TLATRSQIPVANFKGNNSAPAWSPDGSQL 267 Query: 273 LISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V +A R+T + I+ +++PD I+F SDR G Q+Y + Sbjct: 268 AVALTQDGLSQIYIVSADGSAKPRRITRSPGIDTEPTFTPDGRSIIFTSDRSGGPQIYQV 327 Query: 332 QSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 +G D +R++ + SY P SP G + + F I + E LL + Sbjct: 328 GLDGGDARRLTFN--GSYNISPRISPDGSTLLYVARRDGAFRIASLNLPTGTETLLTDGR 385 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 386 DDQSPSFAPNGMQVLYAATQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 439 >gi|56476928|ref|YP_158517.1| translocation protein TolB [Aromatoleum aromaticum EbN1] gi|67461905|sp|Q5P4Z6|TOLB_AZOSE RecName: Full=Protein tolB; Flags: Precursor gi|56312971|emb|CAI07616.1| tolB protein precursor, periplasmic component of the Tol biopolymer transport system [Aromatoleum aromaticum EbN1] Length = 426 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 108/410 (26%), Positives = 207/410 (50%), Gaps = 20/410 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ A PV+I F + L +++VV DL+RS +F+L+ T Sbjct: 29 IEITGAGATRFPVAIPL--FENEGSLPRGITDVVRADLERSGLFSLVDMGLVTLPAT--- 83 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 ++P + GA ++ G + + R V FRL+D + + ++ G +PA R A Sbjct: 84 AVPDLAGVRARGADAVLAGSLYPQADGRYDVRFRLFDTQKQTELGGLSLRMTPAQNRATA 143 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D +Y+ +TG+ G F +RI +V V SG + L + D DG N + SR+ I+ Sbjct: 144 HRIADFVYEKLTGQPGYFATRIAYV---VKSG-PRYELQIADADGMNAQTALASREPII- 198 Query: 216 EPRFSPNQQKVAYATYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P ++P+ Q++AY +++ + ++ V+ + T + NF+ AP ++ +G+R + Sbjct: 199 SPAWAPDGQRLAYVSFEAKKPVVYVHTLATGQRHV---VANFKGSNSAPTWAPDGQRLAV 255 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD +Y ++ + R+ + I+ ++SPD I F SDR G Q+Y + ++ Sbjct: 256 VLTKDGQSQLYVLNADGSGLRRMATSPGIDTEPAWSPDGEWIYFSSDRGGSAQIYRIPAS 315 Query: 335 GSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G +R++ E +Y P SP G +AF + +F + VM Q +L + S + Sbjct: 316 GGSAQRVT--FEGNYNVTPRLSPDGRSLAFITRNNGRFQVAVMDLATRQTTILTDSSRDE 373 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQW 442 +P+++P+GR ++++ + G L ++ +GR + ++ A +P W Sbjct: 374 SPSFAPNGRMILYATESGGR--GVLAAVSSDGRVKQRLSVQAADVREPSW 421 >gi|71901735|ref|ZP_00683807.1| TolB, N-terminal [Xylella fastidiosa Ann-1] gi|71728507|gb|EAO30666.1| TolB, N-terminal [Xylella fastidiosa Ann-1] Length = 474 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 221/456 (48%), Gaps = 28/456 (6%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSI 58 S+ F +L+M L +L+G FP S + + N + IA Sbjct: 25 SIIFLKVIDLHMTKFPRWLAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYH 84 Query: 59 DELGGK---VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 D G VS VV+ DL RS F + ++ T+ I RF W +L +V GR Sbjct: 85 DSAGAPATDVSGVVAADLNRSGQFRTLPLGQITERPTHGSEI-RFPIWQALKQDYIVVGR 143 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V+ + RVE+ L+DV++ K+++G + ++ R +AH ++D IY+ ITG +G F + Sbjct: 144 VLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFT 203 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +V+ S ++ +L V D DG N + + S + +L P +SP+ +K+AY +++ Sbjct: 204 RIAYVTASGSHRAMRYALMVADSDGYNPQTIVRSAEPLL-SPDWSPDGKKLAYVSFEKGG 262 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + + + +FR + AP F+ +G R +S+ + +IY +DL S Sbjct: 263 S-SIYIQDIATG-SRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLI 320 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASY 349 +LTN+ I+ +S D I F SDR G+ Q+Y + S G R++ SY Sbjct: 321 QLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQIYKVASVGGAATRVTFQGNYNASASVSY 380 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFS 407 D I + SG + I +M + GS + +L ++P+++P+ ++++ Sbjct: 381 DD-------KKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYA 433 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++ G LY++ + R + L++ + +P W Sbjct: 434 AREGGR--GVLYAVSADARVRQRLVSVDSDVREPAW 467 >gi|254448714|ref|ZP_05062172.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium HTCC5015] gi|198261722|gb|EDY86009.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium HTCC5015] Length = 442 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 110/413 (26%), Positives = 207/413 (50%), Gaps = 11/413 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ +S P++I ++ L VS VV DL+RS F ++++ K + Sbjct: 34 IRITQSSDLARPIAIVPFEWQGEQALPTDVSSVVRTDLERSGQFKALAEEDMLAKPSAGS 93 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 I +Q+W +L L+ G++ G+ R V+ +L+DV +Q++G + ++ + R+ A Sbjct: 94 RI-NWQNWRTLEMPHLLVGKIRSTGEGRYAVDVQLFDVNRGRQLLGYSYPATAKTLRRTA 152 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQIL 214 H ++D++Y+ ITG +G F++RI FVS S + SL V D DG R + S IL Sbjct: 153 HKVADEVYEEITGVRGAFSTRIAFVSVETRSAKDRTFSLQVADADGHAPRTVVRSSQPIL 212 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +AY ++ + V+ ++ R + +++ F + AP FS +G + + Sbjct: 213 -SPTWSPDGMHLAYVSFRNRQA-EVFAVNLRTGKE-QKLSGFDGINGAPAFSPDGNQLAM 269 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ + DIY +D+++ +++T I S+S D + + S R G Q+Y + + Sbjct: 270 ALSRSGNPDIYVLDMKTRQLKQITRGYSIETEPSWSSDGDTLYYTSGRTGSPQIYAVSAR 329 Query: 335 GSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G KR+S E Y SP G +A + I V R+L + + Sbjct: 330 GGTPKRVS--FEGGYNASAAASPDGRNLAMVHSQRGSYRIAVKDLKSDLFRVLTDGPQDE 387 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 +P+++P+G+ L+++ +K G L ++ L+GR + L+ T +P W F Sbjct: 388 SPSFAPNGQMLLYATQKGGK--GVLAAVSLDGRVKQELLLTEGDIREPAWSPF 438 >gi|299067719|emb|CBJ38928.1| protein tolB, component of the tol-pal system [Ralstonia solanacearum CMR15] Length = 435 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 127/451 (28%), Positives = 210/451 (46%), Gaps = 24/451 (5%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M +R F L + LL+VL G + +V++A ++ P++IA F + Sbjct: 3 MMMRNFWKSGLRRSAWIGLLMVLCAGVARAQL--YVEIAGAGSSQYPIAIA--NFQGESQ 58 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS-IPRFQDWNSLGAQVLVTGRVIKE 119 + ++ +V DL S F+ + PDS P W S GA V G V + Sbjct: 59 IPQDITAIVRADLVHSGRFSNVD----VAGAVVPDSPAPDLGAWKSRGAAAFVGGTVTRN 114 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G DR + FRL+D + + G R AH I+D IYQ + G++G F +R+ + Sbjct: 115 G-DRYEIRFRLYDTAKGESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSY 173 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS+ + L + D DGAN + S + I+ P +SP+ KVAY +++ + V Sbjct: 174 VSKVGR----RYQLQISDSDGANPQVALTSNEPII-SPSWSPDGTKVAYVSFESRKPV-V 227 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D R I N + AP +S +G+R +++ +D IY V+ + RLT Sbjct: 228 YVHDLITGRRAV-ISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTR 286 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD---QKRISQDKEASYFDPVWSP 356 + I+ S+SPD I F SDR G Q+Y M G D +R++ K P SP Sbjct: 287 SSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPVEGEDAGSAQRVTF-KGGYNTSPRVSP 345 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G L+A+ G F + V L + S ++P+++ +G+ ++++ + G S Sbjct: 346 DGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTSYDESPSFAANGKFILYATRVGGR--S 403 Query: 417 KLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 L ++ +GR +++ A +P W FM Sbjct: 404 VLAAVSTDGRTRQILSLQAGTVREPAWGPFM 434 >gi|28198796|ref|NP_779110.1| translocation protein TolB [Xylella fastidiosa Temecula1] gi|32699695|sp|Q87CZ5|TOLB_XYLFT RecName: Full=Protein tolB; Flags: Precursor gi|28056887|gb|AAO28759.1| TolB protein precursor [Xylella fastidiosa Temecula1] gi|307579949|gb|ADN63918.1| translocation protein TolB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 439 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 28/438 (6%) Query: 20 LLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDL 73 L +L+G FP S + + N + IA D G VS VV+ DL Sbjct: 8 LAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSAGAPATDVSGVVAADL 67 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + ++ T+ I RF W +L +V GRV+ + RVE+ L+DV Sbjct: 68 NRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDV 126 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 ++ K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ +L Sbjct: 127 RNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYAL 186 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DG N + + S + +L P +S + +K+AY +++ +Y+ D + + + Sbjct: 187 MVADSDGYNPQTIVRSAEPLL-SPDWSSDGKKLAYVSFEKGGS-SIYIQDIATG-SRELV 243 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ +S D Sbjct: 244 SSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPVWSSDG 303 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASYFDPVWSPQGDLIAFTKFS 367 I F SDR G+ Q+Y + S G R++ SY D I + S Sbjct: 304 KFIYFTSDRGGRPQIYKVASVGGAATRVTFQGNYNASASVSYDD-------KKIVVAQGS 356 Query: 368 GEKFAIGVM-KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G + I +M + GS + +L ++P+++P+ ++++ ++ G LY++ + Sbjct: 357 GNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR--GVLYAVSADA 414 Query: 426 R-NETLINTPAYASDPQW 442 R + L++ + +P W Sbjct: 415 RVRQRLVSVDSDVREPAW 432 >gi|237746665|ref|ZP_04577145.1| TolB protein [Oxalobacter formigenes HOxBLS] gi|229378016|gb|EEO28107.1| TolB protein [Oxalobacter formigenes HOxBLS] Length = 429 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 116/419 (27%), Positives = 205/419 (48%), Gaps = 25/419 (5%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 H ++++ A PV+IA F + KV++++ DL R+ +F L+ D+ I Sbjct: 30 HLDIQISGVGATQIPVTIA--GFANETVAPQKVTDIIRADLARTGLFRLVGTDA----IL 83 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + + W + GA LV G V K ++ V +RL+D+ Q+ + R Sbjct: 84 PESAFIDYPKWKANGADALVVGSVEKTADGKIDVRYRLFDLGKASQLSALSMVAPAPMTR 143 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+DDIY+ +TG KG F +RI +V V + L + D DG + S++ Sbjct: 144 VTAHKIADDIYEKLTGIKGMFATRIAYV----VKAGNEYRLEIADSDGEGRQLALRSKEP 199 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ KVAY +++ + + VY+ + + RA + N++ AP +S +G + Sbjct: 200 II-SPSWSPDGTKVAYVSFEAKKPV-VYVQNL-VTRARTVVANYKGNNSAPSWSPDGTKL 256 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +++ K+ IY+V+ + +LT T IN +S D I F SDR G Q+Y + Sbjct: 257 AVALSKNGYTQIYTVNANGGSLRQLTQTRSINTEPQFSADGKWIYFTSDRSGGPQIYKIG 316 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 NG + +R++ + P SP G +A+ F + +M + QE L + + Sbjct: 317 VNGGNAQRVTFGSNYN-ISPRVSPDGKSLAYISRRNGGFQLYLMDLENGQEMRLSDTARD 375 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSK----LYSIDLNGR-NETLINTPAYASDPQWVGFM 446 ++P++SP+G+ ++++ TGS L + ++GR + L A +P W FM Sbjct: 376 ESPSFSPNGQFIMYA------TGSGRRGVLSVVSVDGRVRQRLTMKAADVREPSWGPFM 428 >gi|94268877|ref|ZP_01291310.1| WD40-like Beta Propeller [delta proteobacterium MLMS-1] gi|93451428|gb|EAT02274.1| WD40-like Beta Propeller [delta proteobacterium MLMS-1] Length = 437 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/385 (27%), Positives = 197/385 (51%), Gaps = 23/385 (5%) Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++++++S+ L+ +I + ++ + +W+ GA+ +V GR + Sbjct: 66 GRRMADIMSRALEFHGFIEMIEPQLYGER--------QEANWSRHGAEFVVLGRY-RHSA 116 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 D L +E RL D+ + I G+++ + R++ +D++ + +TGEKG SRI FVS Sbjct: 117 DGLNLELRLLDIDAGRMIHGRRYQAPREQLRQLLLRFTDEVVEVLTGEKGVSQSRIAFVS 176 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ SG + + D G +IR +T +D + PRF+P+ + +AY +Y + +Y Sbjct: 177 DA--SG--DKEIYLADILGDDIRRVTYHQD-LAVAPRFTPDGRGLAYTSYHRGNA-NLYQ 230 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D R + + I + + + P + G + ++++ +D+ D+Y D Q RLT+ Sbjct: 231 TDIRELKTTRAISRWVGLNITPSWPPAGDQMVLTLSRDDNPDLYLTDTQGQIIRRLTHGE 290 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDL 360 +N+S S++PD ++ F SDR G Q+Y+M +R++ Q + + P WSP G Sbjct: 291 GVNVSPSFAPDGRRLAFVSDRSGTPQIYIMDLRTMAVQRLTFQGNDNT--TPSWSPDGRW 348 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 IA+T I +++ +G + + + P+WSP R L+FSR + +L Sbjct: 349 IAYTGRHEGVLHIFIIRPEGGPPIQVTRSWGHHETPSWSPDSRQLVFSRLR--HEHEQLC 406 Query: 420 SIDLNGRNETLI--NTPAYASDPQW 442 +I LNGRN ++ + P S PQW Sbjct: 407 TILLNGRNLRVLFSDEPGNHSMPQW 431 >gi|82703827|ref|YP_413393.1| translocation protein TolB [Nitrosospira multiformis ATCC 25196] gi|82411892|gb|ABB76001.1| TolB-like protein [Nitrosospira multiformis ATCC 25196] Length = 441 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/405 (28%), Positives = 195/405 (48%), Gaps = 25/405 (6%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +++ AN PV+I F + LG + ++ V+S DLQR+ +F L+ + P Sbjct: 38 IEIFGGGANQIPVAI--VPFSGEEGLGAQSLTPVISADLQRTGLFKLVDPGGLRPH--EP 93 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + F DW + GA L G I ++ + RL DV + ++ +P R Sbjct: 94 VEV-SFPDWINRGASALAIGTAIPVSGGQISIRVRLLDVARQAELGSYVETVAPEQLRAA 152 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN----IRYLTPSR 210 AH I+D IY+ +TG+ G F++RI +V + K SL V D DG N I Y P Sbjct: 153 AHRIADMIYEKLTGDVGVFSTRIAYV----IKQGKKYSLQVADADGFNAQPVIEYTEP-- 206 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + P +SP+ ++AY +++++ V + T R K + NFR AP +S +G+ Sbjct: 207 ---IISPAWSPDGTRLAYVSFENKK--PVVYVQTLATRTRKAVANFRGSNSAPAWSPDGR 261 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + + I+ ++ +RLT + I+ S+SPD I+F SDR G Q+Y Sbjct: 262 KLAVVLSVMGGSQIFLINSDGGGLQRLTQSSGIDTEPSFSPDGRYIIFTSDRGGSPQIYR 321 Query: 331 MQSNGSDQKRISQDK-EASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 M G K + E SY P +SP G F SG++F + + Q RLL + Sbjct: 322 MPVTGGVSKVAERLTFEGSYNVSPRYSPDGKGFTFIHRSGDRFNVAIQDFATGQVRLLTD 381 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 ++P+++P+GR ++++ + G L ++ +GR ++T Sbjct: 382 SRFDESPSFAPNGRMVLYATEIRGR--GILSAVSSDGRTRQQLST 424 >gi|118574588|sp|Q2Y5H0|TOLB_NITMU RecName: Full=Protein tolB; Flags: Precursor Length = 437 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/405 (28%), Positives = 195/405 (48%), Gaps = 25/405 (6%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +++ AN PV+I F + LG + ++ V+S DLQR+ +F L+ + P Sbjct: 34 IEIFGGGANQIPVAI--VPFSGEEGLGAQSLTPVISADLQRTGLFKLVDPGGLRPH--EP 89 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + F DW + GA L G I ++ + RL DV + ++ +P R Sbjct: 90 VEV-SFPDWINRGASALAIGTAIPVSGGQISIRVRLLDVARQAELGSYVETVAPEQLRAA 148 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN----IRYLTPSR 210 AH I+D IY+ +TG+ G F++RI +V + K SL V D DG N I Y P Sbjct: 149 AHRIADMIYEKLTGDVGVFSTRIAYV----IKQGKKYSLQVADADGFNAQPVIEYTEP-- 202 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + P +SP+ ++AY +++++ V + T R K + NFR AP +S +G+ Sbjct: 203 ---IISPAWSPDGTRLAYVSFENKK--PVVYVQTLATRTRKAVANFRGSNSAPAWSPDGR 257 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + + I+ ++ +RLT + I+ S+SPD I+F SDR G Q+Y Sbjct: 258 KLAVVLSVMGGSQIFLINSDGGGLQRLTQSSGIDTEPSFSPDGRYIIFTSDRGGSPQIYR 317 Query: 331 MQSNGSDQKRISQDK-EASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 M G K + E SY P +SP G F SG++F + + Q RLL + Sbjct: 318 MPVTGGVSKVAERLTFEGSYNVSPRYSPDGKGFTFIHRSGDRFNVAIQDFATGQVRLLTD 377 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 ++P+++P+GR ++++ + G L ++ +GR ++T Sbjct: 378 SRFDESPSFAPNGRMVLYATEIRGR--GILSAVSSDGRTRQQLST 420 >gi|325981318|ref|YP_004293720.1| Tol-Pal system beta propeller repeat-containing protein TolB [Nitrosomonas sp. AL212] gi|325530837|gb|ADZ25558.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosomonas sp. AL212] Length = 432 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 114/439 (25%), Positives = 211/439 (48%), Gaps = 24/439 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 K+ LL L+ +S+HA + + S + I F L ++ V++ DL Sbjct: 7 KLTHGLLFWLLW-LVSSSLHAQLNIEIFGGGASRIPITIVPFAEESRLQQNITPVINADL 65 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 QR+ +F LI D +P + + DW + G LV GRV D++ ++FR+ D+ Sbjct: 66 QRTGLFRLI--DPAGSSPHSPAEV-AYADWANRGVNALVIGRVTHLSGDQVEIQFRVMDI 122 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + Q+ G R AH I+D IY+++TG+ G F++RI +V + K +L Sbjct: 123 AKKSQLTGLAITVPTTQLRAAAHRIADVIYEALTGDVGVFSTRIAYVLKRGN----KYAL 178 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPKR 252 V D DG N + + + I+ P +SP+ ++AY +++++ ++ V + TR RA Sbjct: 179 QVADADGYNAQSIIEYTEPII-SPAWSPDGNQLAYVSFENKKPVVYVQTLSTRERRA--- 234 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + NF+ AP +S +GK+ + + I+ V+ + +RL+ + I+ S+SPD Sbjct: 235 VANFKGSNSAPAWSPDGKKLAVVLTGQGGSQIFLVNTDGSGLQRLSRSSGIDTEPSFSPD 294 Query: 313 SSQIVFESDREGKEQLY---VMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 ++F SDR G Q+Y V + S+ +R++ E SY P +S F + Sbjct: 295 GRYLLFTSDRGGSPQIYRMPVTAAESSNAERLT--FEGSYNVSPDYSHDNKSFTFIHRNN 352 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 +F + V + Q +L ++P+++P+G+ ++++ + +G S D R + Sbjct: 353 NQFNVAVQEIGSRQIEILTNSKFDESPSFAPNGKMILYATEINGHGILSAVSRDGQTRQQ 412 Query: 429 TLINT-----PAYASDPQW 442 + PA+ P+W Sbjct: 413 LSVQAGDIREPAWGPLPKW 431 >gi|300692237|ref|YP_003753232.1| protein tolB, component of the tol-pal system [Ralstonia solanacearum PSI07] gi|299079297|emb|CBJ51969.2| protein tolB, component of the tol-pal system [Ralstonia solanacearum PSI07] Length = 433 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 209/450 (46%), Gaps = 22/450 (4%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M +R F L + LL+VL G + +V++A ++ P++IA F + Sbjct: 1 MMMRNFWKSGLRRSAWIGLLMVLCAGVARAQL--YVEIAGAGSSQYPIAIA--NFQGESQ 56 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS-IPRFQDWNSLGAQVLVTGRVIKE 119 + ++ ++ DL S F+ + PDS P W S GA V G V + Sbjct: 57 ISQNMTAIIRSDLVHSGRFSNVD----VAGAVVPDSPAPDLGAWKSRGAAAFVGGTVTRN 112 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G DR + FRL+D + + G R AH I+D IYQ + G++G F +R+ + Sbjct: 113 G-DRYEIRFRLYDTAKGESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS+ + L + D DGAN + S + I+ P +SP+ KVAY +++ + V Sbjct: 172 VSKVGR----RYQLQISDSDGANPQIALTSNEPII-SPSWSPDGTKVAYVSFESRKPV-V 225 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D R I N + AP +S +G+R +++ +D IY V+ + RLT Sbjct: 226 YVHDLVAGRR-TVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTR 284 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-EASY-FDPVWSPQ 357 + I+ S+SPD I F SDR G Q+Y M G D + + SY P SP Sbjct: 285 SSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPVEGEDAGSAQRVTFKGSYNTSPRMSPD 344 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G L+A+ G F + V L + + ++P+++ +G+ ++++ + G S Sbjct: 345 GKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTAYDESPSFAANGKFILYATRVGGR--SV 402 Query: 418 LYSIDLNGRNETLINTPA-YASDPQWVGFM 446 L ++ +GR +++ A +P W FM Sbjct: 403 LAAVSTDGRTRQILSLQAGEVREPAWGPFM 432 >gi|126668393|ref|ZP_01739350.1| translocation protein TolB precursor [Marinobacter sp. ELB17] gi|126627102|gb|EAZ97742.1| translocation protein TolB precursor [Marinobacter sp. ELB17] Length = 449 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 108/424 (25%), Positives = 206/424 (48%), Gaps = 10/424 (2%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIA-FTKFVSIDELGGKVSEVVSKDLQRSDV 78 L L+ P +++ + P+++ F + +I G ++++V DL S Sbjct: 30 LFFLLATSLPLRAELLIRITEGVDSALPIAVVPFAESGAIPP-GDTLADIVQSDLTMSSE 88 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F + + + + F+DW LG + ++ G++ ++G DRL + L+DV ++ Sbjct: 89 FRTLPAEKMLSLPSQRSEV-HFRDWRLLGQRYVLVGQLTRQG-DRLEARYELFDVNREER 146 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 I+G+ + + R +AH +SD +Y++ITGE+G F++++ +++ V ++ L V D Sbjct: 147 ILGESAGAPLGNLRTLAHYVSDRVYEAITGERGAFSTQLAYITRENVGDKVRYRLQVSDI 206 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG R S + IL P +S + ++AY +++ +Y+ + + K I +FR Sbjct: 207 DGKRSRVRLESAEPIL-SPAWSRDGSRLAYVSFETGKPA-IYVHELASGKRTK-IADFRG 263 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + AP +S +GK L+++ KD DIY +DL S +LT+ I A+YS +I F Sbjct: 264 LNSAPAWSPDGKSLLMTLSKDGNADIYRMDLASRDLTKLTDHWAIETEATYSAGGDEIFF 323 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G Q+Y + G ++ + + P +G+ + + F I Sbjct: 324 TSDRSGGPQIYRQKGKGEPRRMTFGSRYNARPRP--DHKGEFVYYVHQRSSGFHIARTNL 381 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 +E +L + ++P+ SP+GR LI++ ++ G + + S D G +L T Sbjct: 382 KSGEETVLTRTESDESPSVSPNGRMLIYATRQGGASVLTVISAD-GGAAYSLPATEGDVR 440 Query: 439 DPQW 442 +P W Sbjct: 441 EPAW 444 >gi|326316638|ref|YP_004234310.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373474|gb|ADX45743.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax avenae subsp. avenae ATCC 19860] Length = 439 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 14/383 (3%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+S ++ DL+RS F ++ D ++ + +S P W GA L TG V + R Sbjct: 67 KISAIIQADLERSGQFRVV--DGSGPQL-DENSRPDAALWKEKGADSLTTGSVTRLPDGR 123 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FRLW+ + + G+ F + R +AH I+D +Y+ +TG++G F++RI +V+++ Sbjct: 124 YDVRFRLWNTVRGEDLGGQSFVVTQGDLRLVAHRIADYVYEKLTGQRGIFSTRIAYVTKA 183 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + SL V D DG N + S + I+ P +SP+ ++AY +++ + VY+ D Sbjct: 184 GS----RYSLWVADSDGENAQSALSSPEPII-SPAWSPSGTQLAYVSFESRKPV-VYVHD 237 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + I NFR AP +S +G+ +++ +D + +Y++D RL + I Sbjct: 238 VSTGRR-RLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGI 296 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + +YS D I F SDR G Q+Y + + G +R++ A P SP G +A+ Sbjct: 297 DTEPTYSSDGRSIYFVSDRGGAPQIYRVPATGGSAERVTFTG-AYNISPSISPDGKWLAY 355 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + VM + + + ++P+++P+G+ ++++ ++ G L + L Sbjct: 356 ISRVGGAFKLHVMDLTSGSVTAITDTTADESPSFAPNGKLIVYATQQQGR--EALMTTTL 413 Query: 424 NGR-NETLINTPAYASDPQWVGF 445 +G+ L +P W F Sbjct: 414 DGKIKARLAGQSGDIREPDWGPF 436 >gi|221068062|ref|ZP_03544167.1| Tol-Pal system beta propeller repeat protein TolB [Comamonas testosteroni KF-1] gi|220713085|gb|EED68453.1| Tol-Pal system beta propeller repeat protein TolB [Comamonas testosteroni KF-1] Length = 417 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 110/412 (26%), Positives = 193/412 (46%), Gaps = 18/412 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + IA F K+S ++ DL+RS F + T S Sbjct: 18 RVEVTGVGLTQLPIAIAPFKGEGSAPQKISAIIQADLERSGQFRGVDASGVALDET---S 74 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P W GA L TG + + R V FRLWDV + + G+ F + R +AH Sbjct: 75 RPDVAQWRQKGADSLATGSITRLADGRWDVRFRLWDVVKGQDLGGQGFAVTTGDLRLVAH 134 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D IY+ +TGEKG F++RI +V+++ + L + D DG N + S + I+ Sbjct: 135 RIADYIYEKLTGEKGIFSTRIAYVTKAGA----QYRLWIADADGENAQSALSSPEPII-S 189 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALIS 275 P ++PN ++AY +++ + VY+ D + +R + NFR AP +S +G R ++ Sbjct: 190 PAWAPNGTQLAYVSFESRKPV-VYVHD--VASGHRRLLANFRGSNSAPAWSPDGSRLAVT 246 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +D +Y + Q RL + I+ +S D I F SDR G Q+Y + S+G Sbjct: 247 LSRDGGSQLYLLSAQGGEPRRLMQSSGIDTEPCFSSDGRTIYFVSDRGGAPQVYKVSSSG 306 Query: 336 SDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +R++ +Y P SP G +A+ G F + VM + + + ++ Sbjct: 307 GSAERVT--FSGTYNISPAISPDGKWLAYVSRVGGGFKLQVMDLATGTVNSVTDTTADES 364 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGF 445 P+++P+ R ++++ + G L + L+G+ + + P+ +P W F Sbjct: 365 PSFAPNSRLIVYATIQGGR--EALMTTTLDGKIKARLAGPSGDIREPDWGPF 414 >gi|118594344|ref|ZP_01551691.1| translocation protein TolB precursor [Methylophilales bacterium HTCC2181] gi|118440122|gb|EAV46749.1| translocation protein TolB precursor [Methylophilales bacterium HTCC2181] Length = 432 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 189/375 (50%), Gaps = 11/375 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV--IKEGKD 122 + EV++ DL RS +F+ I + + F +W +L +Q +V G++ I Sbjct: 56 MHEVITNDLNRSGLFSSIDISGVSDYPIDEREV-NFSNWAALQSQFIVVGKIDAIGRSNS 114 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 +++V + L D+ K ++ P+ +R IAH I+D IY+ +TG KG F++ I FV + Sbjct: 115 QMQVTWSLIDIYKEKTVLSVAIKGQPSQYRVIAHRIADTIYEKLTGSKGVFDTNIAFVKK 174 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 G K SL + D DG N R + SR I+ PR+SPN +K+AY +++ + + +Y+ Sbjct: 175 L---GKEKYSLFIADYDGHNPRAIVNSRYSII-SPRWSPNGKKIAYVSFEKKKPV-IYVQ 229 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + NFR AP +S + K+ I + IY++D ++L T Sbjct: 230 DIETGKR-TLLANFRGNNSAPAWSPDSKKLAIVLTYSANSQIYTIDADGKNIKQLMRTRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 IN ++SP+ +I F SDR G Q+Y + + ++ R++ + + P SP G L+ Sbjct: 289 INTEPAWSPNGKEIYFSSDRAGSAQIYKVDVDTNEVVRVTFEGNNN-VSPSLSPDGKLLL 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 F + + + +Q L + ++P +SP+G ++F+ K G +K+ ++ Sbjct: 348 FLNQDNGSYRVAIQNLLSNQMLKLTNGPDDESPIFSPNGHMVLFTYKDYGKV-TKIGTVS 406 Query: 423 LNGRNETLINTPAYA 437 +NG T I+ + A Sbjct: 407 INGLKMTPIDVGSEA 421 >gi|120612059|ref|YP_971737.1| translocation protein TolB [Acidovorax citrulli AAC00-1] gi|120590523|gb|ABM33963.1| TolB, N-terminal domain protein [Acidovorax citrulli AAC00-1] Length = 438 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 186/364 (51%), Gaps = 15/364 (4%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+S +V DL+RS F + D+ ++ + +S P W GA L TG + + R Sbjct: 66 KISAIVQADLERSGQFRAV--DASGPQL-DENSRPDVALWKQKGADSLTTGSITRLPDGR 122 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FRLW+ + G+ F + A R +AH I+D +Y+ +TG++G F++RI +V+++ Sbjct: 123 YDVRFRLWETVRGEDKGGQSFVVTQADLRLVAHRIADYVYEKLTGQRGIFSTRIAYVTKA 182 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + SL V D DG N + S + I+ P +SP+ ++AY +++ + VY+ D Sbjct: 183 GS----RYSLWVADADGENAQSALSSPEPII-SPAWSPSGTQLAYVSFESRKPV-VYVHD 236 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + I NFR AP +S +G+ +++ +D + +Y++D RL + I Sbjct: 237 VSTGRR-RLIANFRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGI 295 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIA 362 + +YS D I F SDR G Q+Y + + G +R++ +Y P SP G +A Sbjct: 296 DTEPTYSSDGRSIYFVSDRGGAPQIYRVPATGGSAERVT--FTGTYNISPSISPDGKWLA 353 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + G F + VM + + + ++P+++P+GR ++++ ++ G L + Sbjct: 354 YISRVGGAFKLHVMDLTSGSVTAITDTTADESPSFAPNGRLIVYATQQQGR--EALMTTT 411 Query: 423 LNGR 426 L+G+ Sbjct: 412 LDGK 415 >gi|262368607|ref|ZP_06061936.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter johnsonii SH046] gi|262316285|gb|EEY97323.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter johnsonii SH046] Length = 427 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 120/429 (27%), Positives = 208/429 (48%), Gaps = 35/429 (8%) Query: 11 LNMKINLCLLLVLIGGFFP---TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 + M L L ++ F P T HA + + A IA F + L Sbjct: 1 MEMTRKHLLSLAILTAFSPVLVTQAHAQLHLEIAKAPEEAPKIAIVPFSNDSSL----YP 56 Query: 68 VVSKDLQRSDVFNLISQD-SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 ++ DL RS F S++ + NP++ +W + G +VTG V V Sbjct: 57 IIETDLNRSGKFTSASKNLPATASMNNPNAA----NWQAAGVPYVVTGTVKTTENGSYEV 112 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++L+DV+ ++Q + + + PAS R AH ISD IYQ++TG GDF+ RI +V + Sbjct: 113 HYQLYDVQ-KQQYLLNELLTVPASRVRSAAHMISDAIYQALTGIPGDFSGRIAYVLRNPA 171 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + +L + D DG R + SRD IL P ++P+ +K+AY +++ + +Y+ D Sbjct: 172 TPEQRYTLQIADTDGEQPRTILTSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYVQDLS 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 A +++ +FR + AP FS +GK L + +IY ++L++ +R+TN I+ Sbjct: 230 TG-AREKLASFRGLNGAPSFSPDGKSMLFTASMHGNPEIYQMNLETRQLQRMTNDSAIDT 288 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA--- 362 A Y+PD +F SDR G Q+Y S R++ F ++ +G L A Sbjct: 289 EARYAPDGKSFIFTSDRGGSAQIYRYDLANSSYNRLT-------FRGAFNARGTLSADGK 341 Query: 363 ----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + SG + + + + S +L S ++P++SP+G+ ++++ ++G G L Sbjct: 342 KLALVHRPSGSNYKVAIQDLNSSVTNILTPTSLDESPSFSPNGQMVVYA-TREGSRG--L 398 Query: 419 YSI-DLNGR 426 SI L+GR Sbjct: 399 LSIMSLDGR 407 >gi|261855154|ref|YP_003262437.1| Tol-Pal system beta propeller repeat protein TolB [Halothiobacillus neapolitanus c2] gi|261835623|gb|ACX95390.1| Tol-Pal system beta propeller repeat protein TolB [Halothiobacillus neapolitanus c2] Length = 435 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/440 (26%), Positives = 214/440 (48%), Gaps = 14/440 (3%) Query: 11 LNMKINLCLLLVLIGGFF--PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +I L +L G F P A + + + S V IA F + + + Sbjct: 1 MKARIQRWGLWILSGLLFLAPAVSQAELNIVISGGQESGVPIAVVPFSTTTNT--DFASI 58 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + DL RS F ++ D + + P+ + +F W + AQ LV G+V+++G + + F Sbjct: 59 IDADLARSGQFAPLTTDQMPSQPSAPEQV-QFDQWRTGKAQYLVVGKVVQQGGN-YQATF 116 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L +V + +Q+ G+ + ++ R IAH I+D I++ ITG +G F+++I +V+E+ G Sbjct: 117 YLLNVTNGQQMTGRVISAPVSAARSIAHRIADIIFKQITGVRGAFDTKIAYVTETDGPGK 176 Query: 189 IKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L V D DGAN + + S + L P +SP+ K+AY +++ +++ D R Sbjct: 177 KRRYTLEVADSDGANPQTVL-SSNFPLMSPTWSPDGSKLAYVSFEGRRS-GIWVQDLRTG 234 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + ++ F + AP +S G + I++ K + +IY VDL + ++TN IN A Sbjct: 235 QR-YQLTKFPGINGAPSWSPKGNKIAITLSKYHSPNIYVVDLDTRNLTQVTNDGSINTEA 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + PD+ +VF SDR G QL+ S +R++ + + SP G +A Sbjct: 294 CWLPDNQTLVFTSDRSGSPQLFEKTVGTSSAQRLTFGLSYAAGGAI-SPDGKTLALLAGG 352 Query: 368 GEKFAIGV--MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 F + V + GS R + + + P+++P+G LI++ + G + K+ + G Sbjct: 353 NGGFRVAVQSLSGGGSDLRYISNGGSEERPSFAPNGSMLIYASQVGGSSVLKVSPVS-GG 411 Query: 426 RNETLINTPAYASDPQWVGF 445 ++TL DP W F Sbjct: 412 ESQTLRFARGKVRDPAWGPF 431 >gi|121594093|ref|YP_985989.1| translocation protein TolB [Acidovorax sp. JS42] gi|120606173|gb|ABM41913.1| TolB, N-terminal domain protein [Acidovorax sp. JS42] Length = 443 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/421 (26%), Positives = 196/421 (46%), Gaps = 16/421 (3%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P S A +V + + IA F + K+S +V DL+RS F + Sbjct: 36 PLSALAQFRVEITGVGLTQLPIAIAPFRGEPQSPQKISAIVQADLERSGRFLGVDASGVA 95 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + S P W A L +G + + R V FRLWDV + + G+ F + Sbjct: 96 ---LDESSRPDLSLWRQRKADALTSGSITRLADGRFDVRFRLWDVVKAQDLGGQSFVVTQ 152 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 A R +AH I+D +Y+ +TGE+G F++RI +V+++ + SL V D DG N + Sbjct: 153 ADLRLVAHRIADFVYEKLTGERGIFSTRIAYVTKAGS----RYSLWVADADGENAQSALS 208 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S + I+ P ++P ++AY +++ + VY+ D R + I NFR AP +S + Sbjct: 209 SPEPII-SPAWAPTGTQLAYVSFESRKPV-VYVHDVATGRR-RLIANFRGSNSAPAWSPD 265 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G+ +++ +D +Y++D RL + I+ +S D I F SDR G Q+ Sbjct: 266 GRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGIDTEPVFSSDGRSIYFVSDRGGSPQV 325 Query: 329 YVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 Y + ++G +R++ + SY P SP G +A+ G + + VM + Sbjct: 326 YRVAASGGGAERVTFN--GSYNISPSISPDGQWLAYISRVGGAYKLHVMDLKSGSVTAVT 383 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + S + P+++P+ R ++++ ++ G L + L+G+ L +P W F Sbjct: 384 DTSADENPSFAPNSRLIVYATQQQGR--EALMTTTLDGKIKARLAGQGGDIREPDWGPFQ 441 Query: 447 D 447 + Sbjct: 442 N 442 >gi|332528330|ref|ZP_08404330.1| translocation protein TolB [Hylemonella gracilis ATCC 19624] gi|332042201|gb|EGI78527.1| translocation protein TolB [Hylemonella gracilis ATCC 19624] Length = 433 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 200/390 (51%), Gaps = 20/390 (5%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIA-FTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 F P V+VA P S+A F +I + K+S +V DL+RS F + + Sbjct: 3 FAPAHAQFRVEVAGVGLTQVPFSVAPFRGEAAIQQ---KISAIVLADLERSGQFRSVVLN 59 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 K + + P W G+ LV G V + R V FRLWDV K + G+ F Sbjct: 60 --KADALDETARPDLAAWRQAGSDALVAGSVTRMADGRFDVRFRLWDVVAGKDLGGQSFL 117 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 S A R AH ++D +Y+ +TG+KG F++RI +V+++ ++SL V D DG + Sbjct: 118 VSAADLRLSAHRVADYVYEQLTGDKGVFSTRIAYVTKTDQ----RHSLWVADADGEAAQP 173 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 S + I+ P +SP+ +++AY +++ + VY+ + R + + +FR AP + Sbjct: 174 ALSSPEPII-SPTWSPDGRQLAYVSFESRRPV-VYIHEVSTGRR-RLVASFRGSNSAPAW 230 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ +++ +D +Y++DL + A E RLT + I+ +YS D I F SDR Sbjct: 231 SPDGRFLAVTLSRDGGSQLYTLDLNNLAAEPLRLTRSNGIDTEPTYSADGRFIYFVSDRG 290 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGS 381 G Q+Y + + G + +R++ +Y P S G +A+ ++ +GE F + VM+ Sbjct: 291 GSPQIYRLPAKGGNPERVT--FTGTYNISPALSADGRWLAYISRINGE-FKLHVMELASG 347 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +L + + P+++P+ R L+++ K++ Sbjct: 348 AVTMLTNTVSDENPSFAPNSRLLLYATKQN 377 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 16/174 (9%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 + + DL+ +A R+ + ++ ++ S++I + + + + L+V ++G + Sbjct: 118 VSAADLRLSA-HRVADYVYEQLTGDKGVFSTRIAYVTKTDQRHSLWVADADGEAAQPALS 176 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSG 401 E P WSP G +A+ F + + + + + RL+ SN AP WSP G Sbjct: 177 SPE-PIISPTWSPDGRQLAYVSFESRRPVVYIHEVSTGRRRLVASFRGSN-SAPAWSPDG 234 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNG---------RNETLINTPAYASDPQWVGFM 446 R L + +DG GS+LY++DLN R+ + P Y++D +++ F+ Sbjct: 235 RFLAVTLSRDG--GSQLYTLDLNNLAAEPLRLTRSNGIDTEPTYSADGRFIYFV 286 >gi|33603212|ref|NP_890772.1| translocation protein TolB [Bordetella bronchiseptica RB50] gi|67462004|sp|Q7WFN4|TOLB_BORBR RecName: Full=Protein tolB; Flags: Precursor gi|33568843|emb|CAE34601.1| putative TolB-like translocation protein [Bordetella bronchiseptica RB50] Length = 441 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 117/420 (27%), Positives = 201/420 (47%), Gaps = 19/420 (4%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P V ++ A PV+IA F D G ++EV+ DL R+ F LI+ Sbjct: 36 PAQAQLRVDISGTGATQYPVAIA--DFAVDDTHGRALAEVIRADLTRTGQFRLINA---A 90 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 N DS DW + GA L G + + R V +RL D + Q+ G F + Sbjct: 91 GSGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTE 150 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + Sbjct: 151 QELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGST----YELQVADADGQNPQVALR 206 Query: 209 SRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SR+ I+ P +SP+ ++AY +++ + ++ V+ + T R P + NF+ AP +S Sbjct: 207 SREPII-SPSWSPDGSRLAYVSFESGKPVVYVHTLATSA-RIP--VANFKGNNSAPAWSP 262 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G + +++ +D IY V + R+T + I+ +++PD I+F SDR G Sbjct: 263 DGSQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGP 322 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+Y +G D +R++ + + P SP G + + F I + E LL Sbjct: 323 QIYQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLL 381 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 382 TDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 439 >gi|33594232|ref|NP_881876.1| translocation protein TolB [Bordetella pertussis Tohama I] gi|67462002|sp|Q7VU03|TOLB_BORPE RecName: Full=Protein tolB; Flags: Precursor gi|33564307|emb|CAE43608.1| putative TolB-like translocation protein [Bordetella pertussis Tohama I] gi|332383646|gb|AEE68493.1| translocation protein TolB [Bordetella pertussis CS] Length = 438 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 117/420 (27%), Positives = 201/420 (47%), Gaps = 19/420 (4%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P V ++ A PV+IA F D G ++EV+ DL R+ F LI+ Sbjct: 33 PAQAQLRVDISGTGATQYPVAIA--DFAVDDTHGRALAEVIRADLTRTGQFRLINAAGSG 90 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 N DS DW + GA L G + + R V +RL D + Q+ G F + Sbjct: 91 ---LNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTE 147 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + Sbjct: 148 QELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGST----YELQVADADGQNPQVALR 203 Query: 209 SRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SR+ I+ P +SP+ ++AY +++ + ++ V+ + T R P + NF+ AP +S Sbjct: 204 SREPII-SPSWSPDGSRLAYVSFESGKPVVYVHTLATSA-RIP--VANFKGNNSAPAWSP 259 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G + +++ +D IY V + R+T + I+ +++PD I+F SDR G Sbjct: 260 DGSQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGP 319 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+Y +G D +R++ + + P SP G + + F I + E LL Sbjct: 320 QIYQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLL 378 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 379 TDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 436 >gi|311694926|gb|ADP97799.1| translocation protein TolB precursor [marine bacterium HP15] Length = 437 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 105/402 (26%), Positives = 206/402 (51%), Gaps = 15/402 (3%) Query: 46 SPVSIAFTKFVSIDEL--GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDW 103 S + +A F ++ G KVS +V DL + F + + + + + F+DW Sbjct: 41 SAIPVAVVPFAESGQMPAGDKVSSIVQADLTMTGEFRTLPPEKMLSLPSRREEV-YFRDW 99 Query: 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 LG + ++ G + + G DR++ + L+DV ++I+G+ + ++ R +AH ISD +Y Sbjct: 100 RLLGQRYVLVGALSRSG-DRVQARYELFDVNREERILGETAAAPASNMRSLAHHISDKVY 158 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ++ITG G F++++ +++ +G + L V D DG R S++ IL P +SP+ Sbjct: 159 EAITGVPGAFSTKLAYITLDTANGKPRYRLQVSDVDGKRARIRLESQEPIL-SPAWSPDG 217 Query: 224 QKVAYATYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +K+AY +++ + ++ V+ + T +R ++ +F + AP +S +G+ L+++ KD Sbjct: 218 EKLAYVSFETGKPVIFVHELATG-NRT--KVADFPGLNSAPAWSDDGRSLLMTLSKDGNA 274 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY ++L + +LTN I+ SY I F SDR G Q+Y M + G++ +RI+ Sbjct: 275 EIYRMNLDTRQLTKLTNHWAIDTEPSYDATGKGIFFTSDRSGGPQIYHMDTPGAEPRRIT 334 Query: 343 QDKEASYFDPVWSP--QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 S ++ P G+ + + F I + +E +L + ++P+ +P+ Sbjct: 335 F---GSRYNARPRPDNDGNYVYYVHQRDRAFHIARTELKTGEETILTRTESDESPSVAPN 391 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 GR LI++ +++G + S D G +L + +P W Sbjct: 392 GRMLIYATRQNGSNVLTVISAD-GGAAYSLPASEGDVREPAW 432 >gi|325274582|ref|ZP_08140639.1| translocation protein TolB [Pseudomonas sp. TJI-51] gi|324100284|gb|EGB98073.1| translocation protein TolB [Pseudomonas sp. TJI-51] Length = 433 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 114/441 (25%), Positives = 215/441 (48%), Gaps = 23/441 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L +LL + G + + V + S +P+++ L +++++ DL+ Sbjct: 7 GLLVLLCCVAGL-AVAEEKNILVTSGSDRATPIAVVPFGMQGGSVLPEDIADIIGNDLRN 65 Query: 76 SDVF------NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 S + N+ISQ S ++ F+DW +LGAQ ++ G ++ G RL+V++ Sbjct: 66 SGYYSPIPRQNMISQPSQASEVI-------FRDWKALGAQYVMVGSIVPSG-GRLQVQYA 117 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGI 188 L++V +Q++ S R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 118 LFNVATEQQVLTGSVAGSTDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNN 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ + R Sbjct: 178 TRYTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQNIDTGR 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +++ NF + AP +S +G R + KD DIY +++ S R+T IN Sbjct: 236 R-EQVTNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNMASRQISRVTAGPGINTEPF 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + D + I F SDR GK Q+Y +G +R++ + + + + L+ + G Sbjct: 295 WGKDGNTIYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQG 354 Query: 369 -EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L E S ++PT +P+G LI++ ++ G L + LNGR Sbjct: 355 FTNFKVAAQDLQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGR--GVLMLVSLNGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|308049998|ref|YP_003913564.1| Tol-Pal system beta propeller repeat protein TolB [Ferrimonas balearica DSM 9799] gi|307632188|gb|ADN76490.1| Tol-Pal system beta propeller repeat protein TolB [Ferrimonas balearica DSM 9799] Length = 454 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 105/383 (27%), Positives = 197/383 (51%), Gaps = 26/383 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++S+VV+ DL RS FN + Q + ++ + W + GA+ +V G+V ++G D+ Sbjct: 57 QISDVVTSDLARSGSFNPLPVTQLPQTAISNEAQMDLEAWVNTGAEAVVVGKVSQQGADQ 116 Query: 124 LRVEFRLWD-------------------VKDRKQII-GKKFFSSPASWRKIAHTISDDIY 163 +V F L D VK II G++ S A +R+ H ISD +Y Sbjct: 117 FKVVFELVDLIRAQATGGDTQGFDGNGLVKTNDHIIEGRETVISKAQFRQYGHRISDLVY 176 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 +++TG KG F ++I +V+ + K L V D DG N L SR+ L P +SP+ Sbjct: 177 EALTGVKGAFLTKIAYVTVDESAAPFKFQLRVADYDGYNETVLLRSREP-LMSPSWSPDG 235 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 +K+AY ++++ +Y+ D + +R+ +F + +P +S +GK+ +++ KD + + Sbjct: 236 RKLAYVSFENRRS-EIYVQDLYTQQR-ERVTSFAGINGSPSWSPDGKQLAMTLSKDGSSE 293 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY++DL + A +R+TN I+ +++PD +VF S+R G+ Q+Y + + +R++ Sbjct: 294 IYTLDLATRALKRITNHYAIDTEPTWAPDGKSLVFTSERGGRPQIYRVYLDSGRIQRLTF 353 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 E + + +P G + + KF I M+ +L E ++P+ +P+G Sbjct: 354 QGEWNLGGSM-TPDGRYLVMVNRTNGKFNIARMELSTGYMDVLTETYLDESPSVAPNGSM 412 Query: 404 LIFSRKKDGDTGSKLYSIDLNGR 426 +I+ +G L ++ ++GR Sbjct: 413 IIYGTTHNGR--QVLAAVSMDGR 433 >gi|264677753|ref|YP_003277659.1| protein tolB [Comamonas testosteroni CNB-2] gi|299529321|ref|ZP_07042760.1| translocation protein TolB [Comamonas testosteroni S44] gi|262208265|gb|ACY32363.1| protein tolB [Comamonas testosteroni CNB-2] gi|298722699|gb|EFI63617.1| translocation protein TolB [Comamonas testosteroni S44] Length = 417 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 189/411 (45%), Gaps = 16/411 (3%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + IA +F K+S ++ DL+RS F + T S Sbjct: 18 RVEVTGVGLTQLPIAIAQFKGEGSAPQKISAIIQADLERSGQFRGVDASGLALDET---S 74 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P W GA L TG + + R V FRLWDV + + G+ F + R +AH Sbjct: 75 RPDVAQWRQKGADSLATGSITRLADGRWDVRFRLWDVVKGQDLGGQGFAVTTGDLRLVAH 134 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D IY+ +TGEKG F++RI +V+++ L + D DG N + S + I+ Sbjct: 135 RIADYIYEKLTGEKGIFSTRIAYVTKAGA----HYRLWIADADGENAQSALSSPEPII-S 189 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALIS 275 P ++PN ++AY +++ + VY+ D + +R + NFR AP +S +G R ++ Sbjct: 190 PAWAPNGTQLAYVSFESRKPV-VYVHD--VASGHRRLLANFRGSNSAPAWSPDGSRLAVT 246 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +D +Y + Q RL + I+ +S D I F SDR G Q+Y + S+G Sbjct: 247 LSRDGGSQLYLLSAQGGEPRRLMQSSGIDTEPCFSSDGRTIYFVSDRGGAPQVYKVSSSG 306 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +R++ + P SP G +A+ G F + VM + + + ++P Sbjct: 307 GSAERVTFTGNYN-ISPAISPDGKWLAYISRVGGGFKLQVMDLATGTVNSVTDTTADESP 365 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 +++P+ R ++++ + G L + L+G+ L +P W F Sbjct: 366 SFAPNSRLIVYATIQGGR--EALMTTTLDGKIKARLAGASGDIREPDWGPF 414 >gi|302879781|ref|YP_003848345.1| Tol-Pal system beta propeller repeat protein TolB [Gallionella capsiferriformans ES-2] gi|302582570|gb|ADL56581.1| Tol-Pal system beta propeller repeat protein TolB [Gallionella capsiferriformans ES-2] Length = 422 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 187/394 (47%), Gaps = 20/394 (5%) Query: 56 VSIDELGG------KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 VS+ +GG +++EVVS DL R+ +F L+ D+ + P + + DW GA+ Sbjct: 38 VSLVPMGGDAKLAQEINEVVSGDLLRTGLFRLV--DTTGKAPHEPAEV-NYTDWQLRGAE 94 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 L G V + R+ FRL DV +++G+ R + H I+D IY+ +TG Sbjct: 95 ALAIGTVSLQASGRIEARFRLLDVLKHVELVGQAVSVGNGQVRAVGHRIADLIYEKLTGN 154 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 G F++RI +V+ S L V D DG N + + + I+ P +SP+ +AY Sbjct: 155 PGVFSTRIAYVNRQGRS----FRLIVADSDGYNEQIVLKQNEPIM-SPSWSPDGSHLAYV 209 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +++ + + K + ++R AP +S +G++ + + +D IY + Sbjct: 210 SFETGHA--AVFVQSLYTNLRKVVADYRGSNSAPAWSPDGRQLAVVLTRDGGSQIYLMRP 267 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + R++ + I+ ++SPD ++F SDR G Q+Y M G +R++ S Sbjct: 268 DGSELRRISFSGGIDTEPNFSPDGLSLLFTSDRGGSAQVYRMPVEGGGAQRMT-FASGSC 326 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 F P +SP G FT SG +F I V Q L E + P+++P+G+ ++F+ + Sbjct: 327 FSPRYSPDGKSFVFTHLSGGRFYISVQDFQTGQAEALTEGGWEKKPSYAPNGKLILFASE 386 Query: 410 KDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 G L ++ +GR + + A +P W Sbjct: 387 ARGR--GILATVSSDGRVKQHMFTQSGDAREPVW 418 >gi|332525604|ref|ZP_08401759.1| translocation protein TolB [Rubrivivax benzoatilyticus JA2] gi|332109169|gb|EGJ10092.1| translocation protein TolB [Rubrivivax benzoatilyticus JA2] Length = 434 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/401 (26%), Positives = 201/401 (50%), Gaps = 19/401 (4%) Query: 48 VSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLI-SQDSFKQKITNPDSIPRFQDWNSL 106 + IA F L VS +V DL RS +F + S + ++ S+ DW + Sbjct: 48 IPIAIAPFRDEGALPTPVSGIVGADLARSGMFRVAGSPVALDER-----SVVAAADWRAR 102 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 G +V G V + RL + F LWD+ +Q++ + A R AH I+D I++++ Sbjct: 103 GVDAVVAGSVTRMADGRLDIRFTLWDIVKGEQLVAQSKLVLAADLRLTAHRIADAIHEAL 162 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 TGE+G +RI++ VV + +L V D DG + S + I+ P +SP+ +++ Sbjct: 163 TGERGVNATRIVY----VVKAGKRYTLNVTDADGEGGQVALASPEPII-SPAWSPDGREL 217 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 AY +++ + + V++ D I + +++ +FR AP +S +G+ +++ +D +Y+ Sbjct: 218 AYVSFETQKAV-VWVQDL-ITGSRRKLADFRGSNSAPAWSPDGRELAMTLTRDGISQLYA 275 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + RLT++ I+ Y+PD I F SDR G Q+Y + +G +R++ Sbjct: 276 MPRAGGTPRRLTSSSAIDTEPVYAPDGRSIFFVSDRGGGPQVYRLPLDGGGPQRVT--FT 333 Query: 347 ASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 Y P SP G L+A+ G+ F + + R L + + ++P+++P+G+ ++ Sbjct: 334 GGYNISPAVSPDGKLLAYISRQGDAFKLMTLDLAAGGVRTLTDTRDDESPSFAPNGKLIV 393 Query: 406 FSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVGF 445 ++ ++ G L + L+G +T L+++ A +P W F Sbjct: 394 YATRQQGR--DVLMTTTLDGSFKTRLVSSGADMREPAWGPF 432 >gi|301632611|ref|XP_002945375.1| PREDICTED: protein tolB-like, partial [Xenopus (Silurana) tropicalis] Length = 554 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 194/395 (49%), Gaps = 17/395 (4%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLI-SQDSFKQKIT 92 A +V + + IA F + ++S +V DL+RS F I + + +I+ Sbjct: 1 AQFRVEVTGVGLTQLPIALAPFRGEAQSPQRISAIVQADLERSGQFRGIDAAGAALDEIS 60 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 PD W A LVTG +++ R V FRLWDV + + G+ F + R Sbjct: 61 RPD----MAQWRQKSADSLVTGSIMRLADGRYDVRFRLWDVVRAQDLGGQSFVVNQGDLR 116 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +AH I+D +Y+ +TGE+G F++R+ +V+++ + SL V D DG N + S + Sbjct: 117 LVAHRIADFVYEKLTGERGVFSTRVTYVTKAGG----RYSLWVADADGENAQAALSSTEP 172 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P ++PN ++AY +++ + VY+ D R + I NFR AP +S +G++ Sbjct: 173 II-SPAWAPNGTQLAYVSFESRKPV-VYVHDVASGRR-RLIANFRGSNSAPAWSPDGRQL 229 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +++ +D + +Y++D RL + I+ +S D I F SDR G Q+Y + Sbjct: 230 AVTLTRDGSSQLYTIDANGGEPRRLMQSSGIDTEPVFSGDGRTIYFVSDRGGAPQIYKVG 289 Query: 333 SNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G + +R++ SY P SP G +A+ G F + M + + + Sbjct: 290 ATGGNAERVT--FSGSYNISPSVSPDGRWLAYISRVGGAFKLHAMDLGTGAVNAITDTTA 347 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + P+++P+ R ++++ ++ G L + L+G+ Sbjct: 348 DENPSFAPNSRLIVYATQQQGR--EALMTTTLDGK 380 >gi|163796374|ref|ZP_02190335.1| Periplasmic component of the Tol biopolymer transport system [alpha proteobacterium BAL199] gi|159178516|gb|EDP63058.1| Periplasmic component of the Tol biopolymer transport system [alpha proteobacterium BAL199] Length = 228 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 4/211 (1%) Query: 24 IGGFF-PTSIHAFVKVATNSANYSPVSIAFTKFVSID--ELGGKVSEVVSKDLQRSDVFN 80 +GGF P + + + PV+IA K I+ +G +++ ++ DL+RS +F Sbjct: 19 VGGFAKPAAAELRIDITQGRVEPLPVAIADFKGEGIEPTRIGREIAGIIRADLERSGLFK 78 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 I Q++F Q D +PRF DW + AQ LV GRV + G+ ++RVEFRLWDV + + Sbjct: 79 PIDQNAFIQTDLQFDVVPRFGDWRLINAQALVHGRVTEIGQGQVRVEFRLWDVFAEQYMT 138 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G P S R+ AH I+D IY+ +TGE G F+SRI++++ES K L +MD+DG Sbjct: 139 GTTLTVIPESLRRAAHIIADLIYKRLTGEDGYFDSRIVYIAESGAQNRRKKQLAIMDQDG 198 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 AN ++LT ++ PRFSP Q++ Y Y Sbjct: 199 ANHKFLTDG-GTLVLTPRFSPTHQEITYLAY 228 >gi|241662341|ref|YP_002980701.1| translocation protein TolB [Ralstonia pickettii 12D] gi|240864368|gb|ACS62029.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia pickettii 12D] Length = 434 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 115/417 (27%), Positives = 191/417 (45%), Gaps = 16/417 (3%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S IA F + +S +V DL RS F+ + + Sbjct: 30 HAQLNVEISGVGASQYPIAIANFQGEAQAPQNLSAIVRADLARSGRFSNVD---VAGAVV 86 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P W S GA V G V + G DR + FRL+D + + G P R Sbjct: 87 PESPAPDLGAWKSKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESLGGLSLTRGPGQLR 145 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+D IYQ + GE+G F +R+ +VS+ + L + D DGAN + S + Sbjct: 146 LAAHEIADYIYQKLIGERGVFATRLSYVSKVGR----RFQLQISDSDGANPQIALTSNEP 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ KVAY +++ + + VY+ D R I N + AP +S +G+ Sbjct: 202 II-SPSWSPDGTKVAYVSFESKKPV-VYVHDLVAGRR-TVISNQKGNNSAPAWSPDGRHV 258 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S+ +D +Y V+ + RL+ + I+ S+SPD I F SDR G Q+Y M Sbjct: 259 AVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQIYRMS 318 Query: 333 SNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 +G + + ++ P SP G L+A+ G F + L + S Sbjct: 319 VDGEEAGAAQRVTFKGNYNTSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTS 378 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 N ++P+++ +G+ ++++ + G S L ++ +GR +++ A +P W FM Sbjct: 379 NDESPSFAANGKFILYATRVGGK--SVLAAVSTDGRTRQVLSLQAGEVREPAWGPFM 433 >gi|17545454|ref|NP_518856.1| translocation protein TolB [Ralstonia solanacearum GMI1000] gi|32699708|sp|Q8Y1F5|TOLB_RALSO RecName: Full=Protein tolB; Flags: Precursor gi|17427746|emb|CAD14265.1| probable protein tolb precursor [Ralstonia solanacearum GMI1000] Length = 432 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 123/435 (28%), Positives = 206/435 (47%), Gaps = 24/435 (5%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 + LL+VL G + +V++A ++ P++IA F ++ ++ +V DL S Sbjct: 16 IGLLMVLCVGVARAQL--YVEIAGAGSSQYPIAIA--NFQGESQIPQDITAIVRADLVHS 71 Query: 77 DVFNLISQDSFKQKITNPDS-IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 F+ + PDS P W S GA V G V + G DR + FRL+D Sbjct: 72 GRFSNVD----VAGAVVPDSPAPDLGAWKSRGAAAFVGGTVTRNG-DRYEIRFRLYDTAK 126 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + G R AH I+D IYQ + G++G F +R+ +VS+ + L + Sbjct: 127 GESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSYVSKVGR----RYQLQI 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DGAN + S + I+ P +SP+ KVAY +++ + VY+ D I I N Sbjct: 183 SDSDGANPQVALTSNEPII-SPAWSPDGTKVAYVSFESRKPV-VYVHDL-ISGRRAVISN 239 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + AP +S +G+R +++ +D IY V+ + RLT + I+ S+SPD Sbjct: 240 QKGNNSAPAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRS 299 Query: 316 IVFESDREGKEQLYVMQSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 I F SDR G Q+Y M + G D +R++ K P SP G L+A+ G F Sbjct: 300 IYFTSDRGGAPQIYRMPTEGEDAGSAQRVTF-KGGYNTSPRVSPDGKLLAYISRVGGAFK 358 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + V L + S ++P+++ +G+ ++++ + G S L ++ +GR +++ Sbjct: 359 LYVQDLSNGDVTGLTDTSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQILS 416 Query: 433 TPA-YASDPQWVGFM 446 A +P W FM Sbjct: 417 LQAGTVREPAWGPFM 431 >gi|262375578|ref|ZP_06068811.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter lwoffii SH145] gi|262309832|gb|EEY90962.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter lwoffii SH145] Length = 427 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 118/414 (28%), Positives = 205/414 (49%), Gaps = 19/414 (4%) Query: 17 LCL-LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 LCL ++ +G T A + + A + IA F S D+ + VV DL R Sbjct: 9 LCLAIMTTLGAVTATQSQAQLHLEITKAPEAAPKIAIVPF-SQDQ---SIYPVVENDLNR 64 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F S++ N P + W + G +VTG ++++L+DV+ Sbjct: 65 SGKFASASKNLPATAQLN---SPNAEAWAAAGVPYVVTGSSKTNPDGSYSIQYQLYDVEK 121 Query: 136 RKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 R+ ++ + + PAS R+ AH ISD IYQ++TG GDF RI +V + + + +L Sbjct: 122 RQYLL-NELLTVPASRTRQAAHMISDAIYQALTGIPGDFTGRIAYVLRNPATPERRYTLQ 180 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D DG + + SRD IL P ++P+ +K+AY +++ + +Y+ D + +++ Sbjct: 181 IADTDGEQPKTILTSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYVQDLATGQR-EKLA 237 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +FR + AP FS +GK L + +IY ++L++ +R+TN I+ A Y+PD Sbjct: 238 SFRGLNGAPSFSPDGKSMLFTASMHGNPEIYQMNLETRQLKRMTNDSAIDTEARYAPDGK 297 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAI 373 +F SDR G Q+Y N KR++ + A S G +A + SG + + Sbjct: 298 SFIFTSDRGGSPQIYRYDFNNESTKRLT-FRGAFNARATLSADGKKLALVHRPSGSNYKV 356 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGR 426 V +L S ++P++SP+G+ ++++ ++G+ G L SI L+GR Sbjct: 357 AVQDISSGVTNILTPTSLDESPSFSPNGQMVVYA-TREGNRG--LLSIMSLDGR 407 >gi|118574600|sp|Q2LRP7|TOLB_SYNAS RecName: Full=Protein tolB; Flags: Precursor Length = 452 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 111/418 (26%), Positives = 201/418 (48%), Gaps = 19/418 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID------E 60 + + + + C + + F S+ V + +S + + IA F ++ + Sbjct: 4 VRRGMGVLLLFCAVALCAMPFVVRSVWGKVYIDIDSPAFQKIPIAVADFAPLNGNQGHAD 63 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRVI 117 L V K L + FN++++ + + ++ + +W SLGA+ L+ G Sbjct: 64 LSSWFPGAVRKTLDLTGYFNILNRTGGPRDQSQTGAVQAQAAYGEWRSLGAEYLIQGGFS 123 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +L EFRL D+ +Q++GK++ R + ++ +TG +G F++RI Sbjct: 124 SRGT-QLVAEFRLIDIVQGRQLMGKQYTGGFEDRRDMVIRFVQEVLSLLTGGEGFFDTRI 182 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD--ED 235 FV S + DG ++ + S IL PR+SP+ + +A+++Y D D Sbjct: 183 AFVVRQGRSSSLHTVGFGSQIDGRDLARVAGSPSLIL-SPRWSPDGRYLAFSSYRDGKPD 241 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I V + + K+I +F+ + L +S +G+ L+++ KD +IY +D++S Sbjct: 242 IFVVSPSGSGL----KKIVSFQGLNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSGQVR 297 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLT I++S +SPD +I F S+ G Q+YVM ++G D +R++ + P WS Sbjct: 298 RLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLTYSGNYNT-TPAWS 356 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 P+G IA+ G + I + +DG R L + + + P+WSP GR L FS + G Sbjct: 357 PRGGKIAYEGKVGSGYQIFSIDEDGGNVRQLTSGAGDHEFPSWSPDGRFLTFSLRSGG 414 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%) Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 Q +G D R++ + P WSP G +AF+ + K I V+ GS + +V Sbjct: 202 QIDGRDLARVA-GSPSLILSPRWSPDGRYLAFSSYRDGKPDIFVVSPSGSGLKKIVSFQG 260 Query: 392 LQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-------RNETLINTPAYASDPQWV 443 L P WSP GRSL+ + KDG+ ++Y +D+ RN + +P ++ D + + Sbjct: 261 LNLPGAWSPDGRSLLLTLSKDGN--EEIYVMDVRSGQVRRLTRNSAIDVSPVWSPDGRRI 318 Query: 444 GFM 446 F+ Sbjct: 319 AFV 321 >gi|118574593|sp|Q3K7W5|TOLB_PSEPF RecName: Full=Protein tolB; Flags: Precursor Length = 433 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/415 (25%), Positives = 207/415 (49%), Gaps = 10/415 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ F L ++E++ DL+ S ++ I + + + + P Sbjct: 26 ILVTSGSDRATPIAVVPFGFQGGAVLPDDMAEIIGNDLRNSGYYSPIPKQNMISQPSQPS 85 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 I F+DW ++GAQ ++ G ++ G RL+V++ L++V +++ + R +A Sbjct: 86 EI-IFRDWKAVGAQYMMVGSIVPAG-GRLQVQWALFNVATEQKVADGSVSGTTEQLRDMA 143 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H ISD ++ +TG KG F++R+L+V+ E + +L D DGA L SR+ IL Sbjct: 144 HYISDQSFEKLTGIKGAFSTRLLYVTAERFSEKNTRYTLQRSDYDGARAVTLLQSREPIL 203 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ + R ++I NF + AP +S +G R Sbjct: 204 -SPRFAPDGKRIAYVSFEQKRP-RIFMQNIDTGRR-EQITNFEGLNGAPAWSPDGNRLAF 260 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD DIY ++L S R+T IN + D S I F SDR GK Q+Y + Sbjct: 261 VLSKDGNPDIYVMNLGSRQITRVTAGPGINTEPYWGKDGSTIYFTSDRGGKPQIYKTSAG 320 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQ 393 G +R++ + + + + L+ + G F + ++L + + + Sbjct: 321 GGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFTNFKVAAQDLQRGSVKILTDSTLDE 380 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 381 SPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 433 >gi|309780840|ref|ZP_07675581.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp. 5_7_47FAA] gi|308920522|gb|EFP66178.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp. 5_7_47FAA] Length = 434 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 114/417 (27%), Positives = 191/417 (45%), Gaps = 16/417 (3%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S IA F + +S +V DL RS F+ + + Sbjct: 30 HAQLNVEISGVGASQYPIAIANFQGEAQAPQNLSAIVRADLARSGRFSNVD---VAGAVV 86 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P W + GA V G V + G DR + FRL+D + + G P R Sbjct: 87 PESPAPDLGAWKTKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESLGGLSLTRGPGQLR 145 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+D IYQ + GE+G F +R+ +VS+ + L + D DGAN + S + Sbjct: 146 LAAHEIADYIYQKLIGERGVFATRLSYVSKVGR----RFQLQISDSDGANPQIALTSNEP 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ KVAY +++ + + VY+ D R I N + AP +S +G+ Sbjct: 202 II-SPSWSPDGTKVAYVSFESKKPV-VYVHDLVAGRR-TVISNQKGNNSAPAWSPDGRHV 258 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S+ +D +Y V+ + RL+ + I+ S+SPD I F SDR G Q+Y M Sbjct: 259 AVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQIYRMS 318 Query: 333 SNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 +G + + ++ P SP G L+A+ G F + L + S Sbjct: 319 VDGEEAGAAQRVTFKGNYNTSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTS 378 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 N ++P+++ +G+ ++++ + G S L ++ +GR +++ A +P W FM Sbjct: 379 NDESPSFAANGKFILYATRVGGK--SVLAAVSTDGRTRQVLSLQAGEVREPAWGPFM 433 >gi|192362452|ref|YP_001981531.1| tolB protein [Cellvibrio japonicus Ueda107] gi|190688617|gb|ACE86295.1| tolB protein [Cellvibrio japonicus Ueda107] Length = 427 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 121/438 (27%), Positives = 218/438 (49%), Gaps = 24/438 (5%) Query: 20 LLVLIGGFFPTSIHAFVK-VATNSANYSPVSIAFTKFVSIDELGGK----VSEVVSKDLQ 74 L+ ++ F HA + V + +P+ IA F D GG+ VS ++ D + Sbjct: 4 LVFILFSVFAMVAHAQMNNVIVTQSVQNPIKIAVVPF---DWAGGRLPEDVSSIIRNDFR 60 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S F+ I+ + + I ++DW LGA+ L+ G + ++ R + L+DV Sbjct: 61 FSGQFDPIAPERMLSFPVSEVGI-HYRDWKVLGAEYLLIGSLTQQA-GRYYASYELFDVV 118 Query: 135 DRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 ++++ K + R IAH ISD +Y++ITG +G F++++++V + L Sbjct: 119 KQQRVFAKLTVDGTELQLRDIAHHISDKVYETITGIRGIFSTKLIYVE--AYQHPQRYRL 176 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + D DGA R L SR IL P +SPN Q+VAY +++ E+ +Y+MD R +++ Sbjct: 177 MLSDIDGARSRALLDSRFPIL-SPVWSPNGQRVAYVSFEAENKPAIYIMDIATQRR-QQM 234 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +FR + AP +S +G++ + + KD +IY +++ + +R+TN I+ S++ D Sbjct: 235 TSFRGLNGAPSWSPDGQKLAMVLSKDGNPEIYVMNVLTRQLDRVTNHFAIDSEPSWAADG 294 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEKFA 372 + + F SDR GK Q+Y + Q+R++ D + + V SP G L+ K G + Sbjct: 295 ASLYFTSDRGGKPQIYQVNLATKQQERVTFDGDYNARSRV-SPDGKYLVVLNKRPGGNYH 353 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 I R+L E + ++P+ +P+G L+++ + G L ++ L+ R + L Sbjct: 354 IAAQDLKTGNLRILSETNLDESPSIAPNGAMLMYATRSGGK--GVLAAVSLDARVKIL-- 409 Query: 433 TPAYASD---PQWVGFMD 447 P D P W F + Sbjct: 410 QPPKQGDVREPAWSPFFN 427 >gi|145297814|ref|YP_001140655.1| translocation protein TolB [Aeromonas salmonicida subsp. salmonicida A449] gi|166988074|sp|A4SJ35|TOLB_AERS4 RecName: Full=Protein tolB; Flags: Precursor gi|142850586|gb|ABO88907.1| Periplasmic component of the Tol biopolymer transport system [Aeromonas salmonicida subsp. salmonicida A449] Length = 441 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 117/416 (28%), Positives = 208/416 (50%), Gaps = 25/416 (6%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++IA K+ +L ++EVVS DL RS F +++ Q ++ I F W S Sbjct: 36 PIAIAPFKWEGNGQLPQDIAEVVSNDLMRSGKFKPLARGQMPQTPSSSGEI-NFAPWASQ 94 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV-----------KDRKQIIGKKFFSSP-ASWRKI 154 G + +V G + G ++ F L DV + I+ + + P A R+ Sbjct: 95 GVEAVVVGSIAAVGDGTYKINFELVDVLKGQLAKTQGGESNGYILDSRMATIPGAQMRQF 154 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGI-IKNSLCVMDRDGANIRYLTPSRDQI 213 AH ISD +Y+ +TGE+G F +RI +VS + G L + D DG N + L SR+ Sbjct: 155 AHRISDIVYERLTGERGAFLTRIAYVS--IEQGAQFPYQLRISDYDGYNEKTLLRSREP- 211 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L P +SP+ K+AY +++++ +Y+ D ++ I +FR + AP++S +G+R Sbjct: 212 LMSPAWSPDGSKLAYVSFENQK-SEIYVQDI-YNQQRSLISSFRGINGAPKWSPDGRRLA 269 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 I + KD DIY +D+ S R+TNT I+ ++ PD ++F S+R GK Q+Y + Sbjct: 270 IVLSKDGQPDIYVIDVASKQLTRVTNTRVIDTEPAWMPDGQTLIFTSERGGKPQIYSVNL 329 Query: 334 NGSDQKRISQDKEASYFDPVWSPQG-DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 +R++ + E++ V +P G ++ T+ G+ + I + +L + + Sbjct: 330 ATGVTRRMTWEGESNQGASV-TPDGKSMVMVTRVQGQ-YRIARQDMESGAMLVLTQSALD 387 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFMD 447 ++P+ +P+G +I++ G L S D GR + ++ T + P W F++ Sbjct: 388 ESPSVAPNGSMIIYATIYQGRKSLALVSTD--GRFKAVLPTSSGEIRAPAWSPFLN 441 >gi|222111173|ref|YP_002553437.1| translocation protein tolb [Acidovorax ebreus TPSY] gi|221730617|gb|ACM33437.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax ebreus TPSY] Length = 440 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/413 (26%), Positives = 193/413 (46%), Gaps = 16/413 (3%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + IA F + K+S +V DL+RS F + + S Sbjct: 41 RVEITGVGLTQLPIAIAPFRGEPQSPQKISAIVQADLERSGRFLGVDASGVA---LDESS 97 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P W A L +G + + R V FRLWDV + + G+ F + A R +AH Sbjct: 98 RPDLSLWRQRKADALTSGSITRLADGRFDVRFRLWDVVKAQDLGGQSFVVTQADLRLVAH 157 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D +Y+ +TGE+G F++RI +V+++ + SL V D DG N + S + I+ Sbjct: 158 RIADFVYEKLTGERGIFSTRIAYVTKAGS----RYSLWVADADGENAQSALSSPEPII-S 212 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P ++P ++AY +++ + VY+ D R + I NFR AP +S +G+ +++ Sbjct: 213 PAWAPTGTQLAYVSFESRKPV-VYVHDVATGRR-RLIANFRGSNSAPAWSPDGRTLAVTL 270 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D +Y++D RL + I+ +S D I F SDR G Q+Y + ++G Sbjct: 271 SRDGGSQLYTIDANGGEPRRLMQSSGIDTEPVFSSDGRSIYFVSDRGGSPQVYRVAASGG 330 Query: 337 DQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +R++ + SY P SP G +A+ G + + VM + + S + P Sbjct: 331 GAERVTFN--GSYNISPSISPDGQWLAYISRVGGAYKLHVMDFKSGSVTAVTDTSADENP 388 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFMD 447 +++P+ R ++++ ++ G L + L+G+ L +P W F + Sbjct: 389 SFAPNSRLIVYATQQQGR--EALMTTTLDGKIKARLAGQGGDIREPDWGPFQN 439 >gi|33598302|ref|NP_885945.1| translocation protein TolB [Bordetella parapertussis 12822] gi|67462003|sp|Q7W476|TOLB_BORPA RecName: Full=Protein tolB; Flags: Precursor gi|33566860|emb|CAE39075.1| putative TolB-like translocation protein [Bordetella parapertussis] Length = 441 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/386 (27%), Positives = 188/386 (48%), Gaps = 16/386 (4%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P V ++ A PV+IA F D G ++EV+ DL R+ F LI+ Sbjct: 36 PAQAQLRVDISGTGATQYPVAIA--DFAVDDTHGRALAEVIRADLTRTGQFRLINA---A 90 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 N DS DW + GA L G + + R V +RL D + Q+ G F + Sbjct: 91 DSGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTE 150 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + Sbjct: 151 QELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGST----YELQVADADGQNPQVALR 206 Query: 209 SRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SR+ I+ P +SP+ ++AY +++ + ++ V+ + T R P + NF+ AP +S Sbjct: 207 SREPII-SPSWSPDGSRLAYVSFESGKPVVYVHTLATSA-RIP--VANFKGNNSAPAWSP 262 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G + +++ +D IY V + R+T + I+ +++PD I+F SDR G Sbjct: 263 DGSQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGP 322 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+Y +G D +R++ + + P SP G + + F I + E LL Sbjct: 323 QIYQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLL 381 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDG 412 + + Q+P+++P+G ++++ ++G Sbjct: 382 TDGRDDQSPSFAPNGMQVLYAAIQNG 407 >gi|77460623|ref|YP_350130.1| translocation protein TolB [Pseudomonas fluorescens Pf0-1] gi|77384626|gb|ABA76139.1| TolB colicin import protein [Pseudomonas fluorescens Pf0-1] Length = 414 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 107/415 (25%), Positives = 207/415 (49%), Gaps = 10/415 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ F L ++E++ DL+ S ++ I + + + + P Sbjct: 7 ILVTSGSDRATPIAVVPFGFQGGAVLPDDMAEIIGNDLRNSGYYSPIPKQNMISQPSQPS 66 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 I F+DW ++GAQ ++ G ++ G RL+V++ L++V +++ + R +A Sbjct: 67 EI-IFRDWKAVGAQYMMVGSIVPAG-GRLQVQWALFNVATEQKVADGSVSGTTEQLRDMA 124 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H ISD ++ +TG KG F++R+L+V+ E + +L D DGA L SR+ IL Sbjct: 125 HYISDQSFEKLTGIKGAFSTRLLYVTAERFSEKNTRYTLQRSDYDGARAVTLLQSREPIL 184 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ + R ++I NF + AP +S +G R Sbjct: 185 -SPRFAPDGKRIAYVSFEQKR-PRIFMQNIDTGRR-EQITNFEGLNGAPAWSPDGNRLAF 241 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD DIY ++L S R+T IN + D S I F SDR GK Q+Y + Sbjct: 242 VLSKDGNPDIYVMNLGSRQITRVTAGPGINTEPYWGKDGSTIYFTSDRGGKPQIYKTSAG 301 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQ 393 G +R++ + + + + L+ + G F + ++L + + + Sbjct: 302 GGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFTNFKVAAQDLQRGSVKILTDSTLDE 361 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 362 SPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 414 >gi|26987957|ref|NP_743382.1| translocation protein TolB [Pseudomonas putida KT2440] gi|60415976|sp|P0A173|TOLB_PSEPK RecName: Full=Protein tolB; Flags: Precursor gi|60415977|sp|P0A174|TOLB_PSEPU RecName: Full=Protein tolB; Flags: Precursor gi|24982670|gb|AAN66846.1|AE016313_5 tolB protein [Pseudomonas putida KT2440] gi|5514779|emb|CAB50781.1| TolB protein [Pseudomonas putida] Length = 433 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 112/441 (25%), Positives = 215/441 (48%), Gaps = 23/441 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L ++L + G + + V + S +P+++ L +++++ DL+ Sbjct: 7 GLLVMLCCVAGM-AVAEEKNILVTSGSDRATPIAVVPFGLQGGSVLPEDIADIIGNDLRN 65 Query: 76 SDVF------NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 S + N+ISQ S ++ F+DW +LGAQ ++ G ++ G RL+V++ Sbjct: 66 SGYYSPIPRQNMISQPSQASEVI-------FRDWKALGAQYVMVGSIVPSG-GRLQVQYA 117 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGI 188 L++V +Q++ S R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 118 LFNVATEQQVLTGSVAGSTDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNN 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ + R Sbjct: 178 TRYTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQNIDTGR 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +++ NF + AP +S +G R + KD DIY +++ S R+T IN Sbjct: 236 R-EQVTNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPF 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + D + + F SDR GK Q+Y +G +R++ + + + + L+ + G Sbjct: 295 WGKDGNTLYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQG 354 Query: 369 -EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L E S ++PT +P+G LI++ ++ G L + LNGR Sbjct: 355 FTNFKVAAQDLQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGR--GVLMLVSLNGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|304312901|ref|YP_003812499.1| TolB protein [gamma proteobacterium HdN1] gi|301798634|emb|CBL46866.1| TolB protein [gamma proteobacterium HdN1] Length = 431 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 112/413 (27%), Positives = 209/413 (50%), Gaps = 12/413 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 ++V+ + N +P+++ + S ++S ++S DL RS +F +++ T D Sbjct: 28 IEVSKGADNATPIAVVPFAWESGGRASDEISTIISADLYRSGMFKPLARSDMLSWPTRAD 87 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + F+DW +LG + LV GR G + F ++DV + + K +S ++ R +A Sbjct: 88 QV-FFRDWKALGMEYLVIGRWSNAG-GKYTASFEIFDVLAGRTM--KSATASASNPRWLA 143 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H +D I++++TG KG F +R+L+V+ E + L V D DG N + + S++ IL Sbjct: 144 HYTADLIFEALTGIKGAFATRLLYVTMERHGPRNQRYRLLVSDSDGYNEKVIRDSKEPIL 203 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P ++PN + + Y + +Y+ DT A +RI +F + APRFS +G++ + Sbjct: 204 -SPSWAPNGRHITYVAFQHSHP-GIYIQDTMTGSA-QRITSFPGLNGAPRFSPDGQKLAL 260 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ KD +IY VD ++ A +R+T+ I+ A++SPD +++ SDR G Q+Y Sbjct: 261 TLSKDGNPEIYVVDTRTRALQRVTSHFAIDTEANWSPDGGSLIYTSDRSGGPQIYRQSLA 320 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +R++ D + + +P G +A F I V + +L + ++ Sbjct: 321 TGAVERLTFDGNYNARASM-TPDGRFLAMVHQDSGGFQIAVQDLERGSFNVLTDTPLDES 379 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVGFM 446 P+ +P+G +I++ + G + SID GR + L ++ +P W FM Sbjct: 380 PSIAPNGTMVIYATLERGRGVLGVVSID--GRVKVRLPSSVGEVREPAWSPFM 430 >gi|85858720|ref|YP_460922.1| tolB protein [Syntrophus aciditrophicus SB] gi|85721811|gb|ABC76754.1| tolB protein [Syntrophus aciditrophicus SB] Length = 496 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 111/418 (26%), Positives = 201/418 (48%), Gaps = 19/418 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID------E 60 + + + + C + + F S+ V + +S + + IA F ++ + Sbjct: 48 VRRGMGVLLLFCAVALCAMPFVVRSVWGKVYIDIDSPAFQKIPIAVADFAPLNGNQGHAD 107 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRVI 117 L V K L + FN++++ + + ++ + +W SLGA+ L+ G Sbjct: 108 LSSWFPGAVRKTLDLTGYFNILNRTGGPRDQSQTGAVQAQAAYGEWRSLGAEYLIQGGFS 167 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +L EFRL D+ +Q++GK++ R + ++ +TG +G F++RI Sbjct: 168 SRGT-QLVAEFRLIDIVQGRQLMGKQYTGGFEDRRDMVIRFVQEVLSLLTGGEGFFDTRI 226 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD--ED 235 FV S + DG ++ + S IL PR+SP+ + +A+++Y D D Sbjct: 227 AFVVRQGRSSSLHTVGFGSQIDGRDLARVAGSPSLIL-SPRWSPDGRYLAFSSYRDGKPD 285 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I V + + K+I +F+ + L +S +G+ L+++ KD +IY +D++S Sbjct: 286 IFVVSPSGSGL----KKIVSFQGLNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSGQVR 341 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLT I++S +SPD +I F S+ G Q+YVM ++G D +R++ + P WS Sbjct: 342 RLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLTYSGNYNT-TPAWS 400 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 P+G IA+ G + I + +DG R L + + + P+WSP GR L FS + G Sbjct: 401 PRGGKIAYEGKVGSGYQIFSIDEDGGNVRQLTSGAGDHEFPSWSPDGRFLTFSLRSGG 458 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%) Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 Q +G D R++ + P WSP G +AF+ + K I V+ GS + +V Sbjct: 246 QIDGRDLARVA-GSPSLILSPRWSPDGRYLAFSSYRDGKPDIFVVSPSGSGLKKIVSFQG 304 Query: 392 LQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-------RNETLINTPAYASDPQWV 443 L P WSP GRSL+ + KDG+ ++Y +D+ RN + +P ++ D + + Sbjct: 305 LNLPGAWSPDGRSLLLTLSKDGN--EEIYVMDVRSGQVRRLTRNSAIDVSPVWSPDGRRI 362 Query: 444 GFM 446 F+ Sbjct: 363 AFV 365 >gi|220915811|ref|YP_002491115.1| TolB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|254764837|sp|B8JD21|TOLB_ANAD2 RecName: Full=Protein tolB; Flags: Precursor gi|219953665|gb|ACL64049.1| TolB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 434 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 195/406 (48%), Gaps = 24/406 (5%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGG---KVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + S ++ P+ IA F + G + +EVV DL S +F+++ F + Sbjct: 28 IVVGSPDFRPLPIAVAAFQGEGDAGAAATQTAEVVRADLVLSGLFDVLDPRGFLADPSEG 87 Query: 95 DSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + P RF W +GA L RV + G L E L++V+ ++++ K A R Sbjct: 88 FAAPSIRFARWADVGADGLAKARV-RRGPAGLEGELHLYEVRAGREVLVKLLRVDGADAR 146 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +AH ++D+I + T E G F +RI ++ G L D DG N + L R Sbjct: 147 SLAHRMADEIVRYYTREPGIFATRI----AAIRRGRGTWELVTQDMDGGNQQVLLSER-S 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRIGNFRSMILAPRFSSNGKR 271 IL P + P+ +++ +Y R L R DRA + +G R+ +S +G R Sbjct: 202 ILMSPAWRPDGREILVTSYRSG---RPELWAYRFSDRAFRPLGRHRNA-FGGVYSPDGSR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +V + D++ + +LT+ I++S ++SPD +I F SDR G Q+YVM Sbjct: 258 IAFTVSEGNVTDLWVMSADGAGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVM 317 Query: 332 QSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED 389 ++GS +R++ + +Y P WSP+GDLIAFT K F + V+ D + +D Sbjct: 318 GADGSGARRLT--FQGNYNQTPQWSPRGDLIAFTARDERKVFDVFVVSPDSGAINRITQD 375 Query: 390 SNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + P+W+P+GR +IF ++G G +L D G +T + + Sbjct: 376 QGRTNEEPSWAPNGRLMIFRTDRNG--GIQLVVSDARGDRQTPVTS 419 >gi|226942085|ref|YP_002797159.1| TolB [Laribacter hongkongensis HLHK9] gi|226717012|gb|ACO76150.1| TolB [Laribacter hongkongensis HLHK9] Length = 308 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 94/314 (29%), Positives = 170/314 (54%), Gaps = 15/314 (4%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV ++Q+ G F P R++AH I+D IY++ITG+KG F +RI++V++ G Sbjct: 2 DVNQKRQLTGGSFAIEPKQGRQLAHLIADMIYEAITGQKGIFGTRIVYVAQQ---GRNSY 58 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAP 250 L V D DGA + L S++ L P +SP+ +VAY +++ + ++ V+ + T RA Sbjct: 59 ELRVADADGAGEQTLLRSKEP-LMSPVWSPDGSRVAYVSFETKKPVVYVHNVATGARRA- 116 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + NF+ AP +S +G R +++ IY V RLT + I+ +++ Sbjct: 117 --VANFKGSNSAPAWSPDGTRLAVALTLSGNTQIYLVGADGGTPRRLTQSQGIDTEPAFT 174 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGE 369 PD S+I+F SDR G Q+Y M ++G R++ E +Y P SP G AF + G Sbjct: 175 PDGSRILFTSDRAGGPQIYSMPASGGPATRLTY--EGNYNVSPAVSPDGKSFAFVRREGG 232 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 ++ + ++++ GS + V D+ ++P+++P+G+ ++F+ ++ G LY++ +G + Sbjct: 233 RYRV-MVQQFGSSQANYVSDTQFDESPSFAPNGKMILFASEQGGR--GVLYTVTADGLTK 289 Query: 429 TLINTPAYASDPQW 442 T + +P W Sbjct: 290 TRLGASGDVMEPDW 303 >gi|300704850|ref|YP_003746453.1| protein tolb, component of the tol-pal system [Ralstonia solanacearum CFBP2957] gi|299072514|emb|CBJ43864.1| protein tolB, component of the tol-pal system [Ralstonia solanacearum CFBP2957] Length = 434 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 118/419 (28%), Positives = 193/419 (46%), Gaps = 20/419 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S IA F + ++ +V DL RS F+ + + Sbjct: 30 HAQLNVEISGVGSSQYPIAVAHFQGETQAPENITAIVRSDLARSGRFSNVD---VAGAVV 86 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P W + GA V G V + G DR + FRL+D + + G R Sbjct: 87 PESPAPDLGAWKTRGAAAFVGGTVTRSG-DRYEIRFRLYDTAKGESLGGLSLTRGEGQLR 145 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRD 211 AH I+D IYQ + GE+G F +R+ +VS+ + ++ L + D DGAN + S + Sbjct: 146 LAAHEIADFIYQKLMGERGVFATRLSYVSK-----VGRHYQLQISDSDGANPQIALTSSE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + VY+ D R I N + AP +S +G+R Sbjct: 201 PII-SPSWSPDGTKVAYVSFESRKPV-VYVHDLVTGRR-AVISNQKGNNSAPAWSPDGRR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V+ + RLT + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGHSIYFTSDRGGAPQIYRM 317 Query: 332 QSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +G D +R++ K P SP G L+A+ G F + V L + Sbjct: 318 PVDGEDAGGAQRVTF-KGGYNTSPRVSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVGFM 446 S ++P+++ +G+ ++++ + G S L ++ +GR +TL +P W FM Sbjct: 377 TSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQTLSLQAGQVREPAWGPFM 433 >gi|71737813|ref|YP_275907.1| translocation protein TolB [Pseudomonas syringae pv. phaseolicola 1448A] gi|119371049|sp|Q48FD0|TOLB_PSE14 RecName: Full=Protein tolB; Flags: Precursor gi|71558366|gb|AAZ37577.1| tolB protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 433 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 118/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E+VS Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVSN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R+S + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVSFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|289207751|ref|YP_003459817.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio sp. K90mix] gi|288943382|gb|ADC71081.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio sp. K90mix] Length = 428 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 113/408 (27%), Positives = 200/408 (49%), Gaps = 10/408 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 V V PV++A + EL +S++V+ +L RS +FN + QD + P Sbjct: 26 VTVTEGVTGAIPVAVAPFTYEGEGELDEDISQIVAANLARSGLFN-VEQDDLPAAPSGPA 84 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 W G + LV G ++G D L VEF ++DV +++ G + R+ A Sbjct: 85 DF-LAGPWADAGVEYLVVGNQRRDGDDVL-VEFHVFDVLSEERLGGWRIPVPGDMLRRGA 142 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H ISD IY+ ITG+ G F++RI FVS + +L V D DGAN R L S I+ Sbjct: 143 HRISDIIYEQITGDPGAFSARIAFVSVERNGDERRFALEVADSDGANPRTLFRSAKPIM- 201 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ +++ Y ++++ VY + + +R+ +F + AP +S +G+ +S Sbjct: 202 SPDWSPDGRELVYVSFENRRS-EVYRQNVETG-SRERVASFTGINSAPAWSPDGRYLALS 259 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +D A +IY ++L++ ++T T I +SPD + F SDR G Q+Y + G Sbjct: 260 LSRDGAPNIYLMELETGEMRQMTQTRSIETEPVWSPDGETLYFTSDRAGAPQIYALPREG 319 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +R++ + + V SP G + + F + + + + L E + ++P Sbjct: 320 GSPRRLTFESGYAAAATV-SPDGRYLVYVHGGDGGFQLARLDLNDRRVTRLTEGRDAESP 378 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 +++P+G +I++ DG G L S+ +G+ ++ L +P W Sbjct: 379 SFAPNGSMIIYA-MTDGGRGV-LGSVSQDGQVHQRLAAREGEVREPAW 424 >gi|207728189|ref|YP_002256583.1| protein tolb precursor [Ralstonia solanacearum MolK2] gi|207744076|ref|YP_002260468.1| protein tolb precursor [Ralstonia solanacearum IPO1609] gi|206591434|emb|CAQ57046.1| protein tolb precursor [Ralstonia solanacearum MolK2] gi|206595480|emb|CAQ62407.1| protein tolb precursor [Ralstonia solanacearum IPO1609] Length = 432 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 117/419 (27%), Positives = 194/419 (46%), Gaps = 20/419 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S IA F + ++ +V DL RS F+ + + Sbjct: 28 HAQLNVEISGVGSSQYPIAVAHFQDEAQAPENITAIVRSDLARSGRFSNVD---VAGAVV 84 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P W + GA LV G V + G DR + FRL+D + + G R Sbjct: 85 PESPAPDLGAWKTRGAAALVGGTVTRSG-DRYEIRFRLYDTAKGESLGGLSLTRGEGQLR 143 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRD 211 AH I+D IYQ + GE+G F +R+ +VS+ + ++ L + D DGAN + S + Sbjct: 144 LAAHEIADFIYQKLMGERGVFATRLSYVSK-----VGRHYQLQISDSDGANPQIALTSNE 198 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + VY+ D R + N + AP +S +G+R Sbjct: 199 PII-SPSWSPDGTKVAYVSFESRKPV-VYVHDLLTGRR-AVVSNQKGNNSAPAWSPDGRR 255 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V+ + RLT + I+ S+SPD I F SDR G Q+Y M Sbjct: 256 VAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRM 315 Query: 332 QSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G D +R++ K P SP G L+A+ G F + V L + Sbjct: 316 PVEGEDAGGAQRVTF-KGGYNTSPRISPDGKLLAYIARVGGAFKLYVQDLSNGDVTGLTD 374 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 S ++P+++ +G+ ++++ + G S L ++ +GR +++ A +P W FM Sbjct: 375 TSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQILSLQAGQVREPAWGPFM 431 >gi|167035189|ref|YP_001670420.1| translocation protein TolB [Pseudomonas putida GB-1] gi|166861677|gb|ABZ00085.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas putida GB-1] Length = 423 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 109/421 (25%), Positives = 208/421 (49%), Gaps = 22/421 (5%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQ 89 + V + S +P+++ L +++++ DL+ S + N+ISQ S Sbjct: 16 ILVTSGSDRATPIAVVPFGLQGGSVLPEDIADIIGNDLRNSGYYSPIPRQNMISQPSQAS 75 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 ++ F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q++ S Sbjct: 76 EVI-------FRDWKALGAQYVMVGSIVPSG-GRLQVQYALFNVATEQQVLTGSVAGSTD 127 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTP 208 R +AH I+D ++ +TG KG F++R+L+V+ E + + +L D DGA L Sbjct: 128 QLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDYDGARAVTLLQ 187 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 SR+ IL PRF+P+ +++AY +++ + R+++ + R +++ NF + AP +S + Sbjct: 188 SREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFIQNIDTGRR-EQVTNFEGLNGAPAWSPD 244 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G R + KD DIY +++ S R+T IN + D + + F SDR GK Q+ Sbjct: 245 GSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRGGKPQI 304 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV 387 Y +G +R++ + + + + L+ + G F + ++L Sbjct: 305 YKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQGFTNFKVAAQDLQRGSVKILS 364 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFM 446 E S ++PT +P+G LI++ ++ G L + LNGR + T +P W ++ Sbjct: 365 ETSLDESPTVAPNGTMLIYATRQQGR--GVLMLVSLNGRVRLPLPTAQGEVREPSWSPYL 422 Query: 447 D 447 + Sbjct: 423 N 423 >gi|90417116|ref|ZP_01225044.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2207] gi|90331132|gb|EAS46388.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2207] Length = 440 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 198/391 (50%), Gaps = 24/391 (6%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPR--FQDWNSLGAQVLVTG--RVIKEG 120 +S +V DL RS +F + + + + P S ++DW LGA+ LV G R I EG Sbjct: 64 ISAIVEADLARSGLFAPMER---RDMLAFPSSASEVYYRDWRLLGAEYLVAGNMRAISEG 120 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 R ++EF L +V +K ++ K + + R +AH ISD +Y+ ITG +G F++R+ +V Sbjct: 121 --RYQIEFSLLNVSGQKTVLTHKVSGTSSQMRDLAHLISDKVYEEITGIRGAFSTRLAYV 178 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD--EDILR 238 + + ++ + L V D DGA + + S + I+ P +S N +++AY +++ I R Sbjct: 179 TATRINDVYTYRLNVADADGAREKLVLESGEPIM-SPAWSANGKELAYVSFETGRPAIFR 237 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 L+ + + ++ NF + AP +S +GK+ + + KD ++Y +DLQ+ RLT Sbjct: 238 QNLVTAQRE----QLTNFTGLNGAPSWSPDGKKMALVLSKDGNPELYLLDLQTKKFSRLT 293 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSP 356 I+ ++ PD ++F SDR G Q+Y + S +++ S + A P +P Sbjct: 294 RHFAIDTEPTWMPDGKHLLFTSDRGGTPQIYKLNIASKATERLTFSGNYNAR---PSLAP 350 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G +A + F I + L E ++PT +P+G L+++ K+ GD G Sbjct: 351 DGRTMAMVHRQRDTFHIASFDLKTGRMIELTETRLDESPTVAPNGAMLMYATKQ-GDRGV 409 Query: 417 KLYSIDLN-GRNETLINTPAYASDPQWVGFM 446 L ++ L+ G L ++ +P W F+ Sbjct: 410 -LAAVSLDAGVRYVLPSSSGDVREPAWSPFL 439 >gi|86157087|ref|YP_463872.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|119371034|sp|Q2INP9|TOLB_ANADE RecName: Full=Protein tolB; Flags: Precursor gi|85773598|gb|ABC80435.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 434 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 195/406 (48%), Gaps = 24/406 (5%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGG---KVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + S ++ P+ IA F + G + +EVV DL S +F+++ F Sbjct: 28 IVVGSPDFRPLPIAVAAFQGEGDAGAAATQTAEVVRADLVLSGLFDVLDPRGFLADPAEG 87 Query: 95 DSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + P RF W +GA L RV + G L E L++V+ ++++ K A R Sbjct: 88 FAAPSIRFARWADVGADGLAKARV-RRGPGGLEGELHLYEVRAGREVLVKLLRVDGADAR 146 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +AH ++D+I + T E G F +RI ++ G L D DG N + L R Sbjct: 147 SLAHRMADEIVRYYTREPGIFATRI----AAIRRGRGTWELVTQDMDGGNQQVLLSER-S 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRIGNFRSMILAPRFSSNGKR 271 IL P + P+ +++ +Y R L R DRA + +G R+ +S +G R Sbjct: 202 ILMSPAWRPDGREILVTSYRSG---RPELWAYRFSDRAFRPLGRQRNA-FGGVYSPDGSR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +V + D++ + + +LT+ I++S ++SPD +I F SDR G Q+YVM Sbjct: 258 IAFTVSEGNVTDLWVMSADGSGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVM 317 Query: 332 QSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED 389 ++GS +R++ + +Y P WSP+GDLIAFT K F + V+ D + +D Sbjct: 318 GADGSGARRLT--FQGNYNQTPQWSPRGDLIAFTARDERKVFDVFVVAPDSGAISRITQD 375 Query: 390 SNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + P+W+P+GR +IF ++G G +L D G +T + + Sbjct: 376 QGRTNEEPSWAPNGRLMIFRTDRNG--GIQLVVSDARGDRQTPVTS 419 >gi|83746171|ref|ZP_00943225.1| TolB protein [Ralstonia solanacearum UW551] gi|83727137|gb|EAP74261.1| TolB protein [Ralstonia solanacearum UW551] Length = 434 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 117/419 (27%), Positives = 194/419 (46%), Gaps = 20/419 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S IA F + ++ +V DL RS F+ + + Sbjct: 30 HAQLNVEISGVGSSQYPIAVAHFQDEAQAPENITAIVRSDLARSGRFSNVD---VAGAVV 86 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P W + GA LV G V + G DR + FRL+D + + G R Sbjct: 87 PESPAPDLGAWKTRGAAALVGGTVTRSG-DRYEIRFRLYDTAKGESLGGLSLTRGEGQLR 145 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRD 211 AH I+D IYQ + GE+G F +R+ +VS+ + ++ L + D DGAN + S + Sbjct: 146 LAAHEIADFIYQKLMGERGVFATRLSYVSK-----VGRHYQLQISDSDGANPQIALTSNE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + VY+ D R + N + AP +S +G+R Sbjct: 201 PII-SPSWSPDGTKVAYVSFESRKPV-VYVHDLLTGRR-AVVSNQKGNNSAPAWSPDGRR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V+ + RLT + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRM 317 Query: 332 QSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G D +R++ K P SP G L+A+ G F + V L + Sbjct: 318 PVEGEDAGGAQRVTF-KGGYNTSPRISPDGKLLAYIARVGGAFKLYVQDLSNGDVTGLTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 S ++P+++ +G+ ++++ + G S L ++ +GR +++ A +P W FM Sbjct: 377 TSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQILSLQAGQVREPAWGPFM 433 >gi|332305764|ref|YP_004433615.1| Tol-Pal system beta propeller repeat protein TolB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173093|gb|AEE22347.1| Tol-Pal system beta propeller repeat protein TolB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 451 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 214/456 (46%), Gaps = 39/456 (8%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L +++ S+ + +SA P+++ K+ ++ +SEV+S DL RS Sbjct: 8 LTFLSLMLSASSQASLEIVITEGIDSAR--PIAVVPFKWNGPGQMPEALSEVISGDLLRS 65 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F+ I S + + DS ++ W + G + ++ G V EG DR RV F L D R Sbjct: 66 GKFSPIDTASMPGQ-PHTDSELDYRAWAATGVEAILVGSVTPEGPDRYRVNFTLVDAI-R 123 Query: 137 KQIIGKKFFS---------------------SPASWRKIAHTISDDIYQSITGEKGDFNS 175 QI G K + + +R+ AH ISD +Y+ +TGEKG F + Sbjct: 124 GQITGGKAQALNNGQLTNSNDHILDSRQTVITGEGFRQYAHRISDVVYEKLTGEKGAFMT 183 Query: 176 RILFVSESVVSGIIKNS----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 RI +V VV N+ L V D DG N L S++ L P +SP+ K+AY T+ Sbjct: 184 RIAYV---VVRDRKTNAFPYQLVVADYDGVNETMLLRSKEP-LMSPSWSPDGTKLAYVTF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +++ ++Y+ D + ++ +F + AP FS NGK+ + + KD +IY +D+ S Sbjct: 240 ENKRS-QIYIQDL-YTMSRTQMTDFSGINSAPVFSPNGKQLAMVLSKDGNPEIYVMDIAS 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 ER+T I+ S+SPD ++F S+R GK Q+Y + + +R++ D E + Sbjct: 298 KRLERITRNRAIDTEPSWSPDGKSLIFSSERGGKPQIYRVDLASNSVRRVTFDGEMNLGG 357 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +P G + + + I + ++L + ++P+ +P+G +I+S Sbjct: 358 TI-TPDGGRMVMVNRTRGNYNIAAQDLNNGNIQVLTKTYLDESPSIAPNGSMIIYSTLHQ 416 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L S+D GR L + P W F+ Sbjct: 417 GKQVLSLVSLD--GRFKARLPASDGQVKSPSWSPFL 450 >gi|148546494|ref|YP_001266596.1| translocation protein TolB [Pseudomonas putida F1] gi|148510552|gb|ABQ77412.1| Tol-Pal system beta propeller repeat, TolB [Pseudomonas putida F1] gi|313497574|gb|ADR58940.1| TolB [Pseudomonas putida BIRD-1] Length = 423 Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 109/421 (25%), Positives = 208/421 (49%), Gaps = 22/421 (5%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQ 89 + V + S +P+++ L +++++ DL+ S + N+ISQ S Sbjct: 16 ILVTSGSDRATPIAVVPFGLQGGSVLPEDIADIIGNDLRNSGYYSPIPRQNMISQPSQAS 75 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 ++ F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q++ S Sbjct: 76 EVI-------FRDWKALGAQYVMVGSIVPSG-GRLQVQYALFNVATEQQVLTGSVAGSTD 127 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTP 208 R +AH I+D ++ +TG KG F++R+L+V+ E + + +L D DGA L Sbjct: 128 QLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDYDGARAVTLLQ 187 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 SR+ IL PRF+P+ +++AY +++ + R+++ + R +++ NF + AP +S + Sbjct: 188 SREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQNIDTGRR-EQVTNFEGLNGAPAWSPD 244 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G R + KD DIY +++ S R+T IN + D + + F SDR GK Q+ Sbjct: 245 GSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRGGKPQI 304 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV 387 Y +G +R++ + + + + L+ + G F + ++L Sbjct: 305 YKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQGFTNFKVAAQDLQRGSVKILS 364 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFM 446 E S ++PT +P+G LI++ ++ G L + LNGR + T +P W ++ Sbjct: 365 ETSLDESPTVAPNGTMLIYATRQQGR--GVLMLVSLNGRVRLPLPTAQGEVREPSWSPYL 422 Query: 447 D 447 + Sbjct: 423 N 423 >gi|257487004|ref|ZP_05641045.1| translocation protein TolB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626502|ref|ZP_06459456.1| translocation protein TolB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650948|ref|ZP_06482291.1| translocation protein TolB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488203|ref|ZP_07006239.1| beta propeller repeat-containing TolB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157261|gb|EFH98345.1| beta propeller repeat-containing TolB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323046|gb|EFW79135.1| translocation protein TolB [Pseudomonas syringae pv. glycinea str. B076] gi|320329682|gb|EFW85671.1| translocation protein TolB [Pseudomonas syringae pv. glycinea str. race 4] gi|330868618|gb|EGH03327.1| translocation protein TolB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877973|gb|EGH12122.1| translocation protein TolB [Pseudomonas syringae pv. glycinea str. race 4] gi|330892246|gb|EGH24907.1| translocation protein TolB [Pseudomonas syringae pv. mori str. 301020] gi|330988975|gb|EGH87078.1| translocation protein TolB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009354|gb|EGH89410.1| translocation protein TolB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 433 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E+VS Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVSN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|83647596|ref|YP_436031.1| translocation protein TolB [Hahella chejuensis KCTC 2396] gi|119371045|sp|Q2SCL8|TOLB_HAHCH RecName: Full=Protein tolB; Flags: Precursor gi|83635639|gb|ABC31606.1| Periplasmic component of the Tol biopolymer transport system [Hahella chejuensis KCTC 2396] Length = 430 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/430 (24%), Positives = 218/430 (50%), Gaps = 13/430 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 L++LI G + +++ S PV++ S L + ++ ++DL+RS Sbjct: 9 LILLISGLARADL--VIEIDKGSRAAIPVAVVPFANESGQPLAEDIGQIFTEDLKRSGDI 66 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL-RVEFRLWDVKDRKQ 138 + + + + I F+DW LG + L+ G V + ++ +V + L++V+ +++ Sbjct: 67 EPLDRTKMVSIPSKAEEI-YFRDWGLLGQRYLLVGGVQYDAPSQVYKVRYELYNVQSQQR 125 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 +IGK R + H I+D +Y+++TG +G F++RI +V+ L V D Sbjct: 126 VIGKIISGKSEKLRDMGHAIADAVYEAVTGIRGVFSTRIAYVTLEKSGAKNIYRLEVADA 185 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK-RIGNFR 257 DG L R + P +SP+ +K+AY +++ + +Y+ D +D + ++ +F+ Sbjct: 186 DGRRSTELL-KRSMPIISPAWSPDGKKLAYVSFESQRPA-IYVQD--VDTGTRTQVTSFK 241 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + AP +S +G + +++ KD ++Y +DL++N+ +RLTN I+ AS+SPD I Sbjct: 242 GLNSAPTWSPDGTKLAVTLSKDGNAELYVLDLRNNSLKRLTNHWAIDTEASWSPDGRTIA 301 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G Q+Y++ ++G +R++ E Y P +S G + + F + + Sbjct: 302 FTSDRGGGPQIYLVDASGGSPRRLT--FEGRYNSRPRFSVDGKKVYYVHQRDGSFNVASL 359 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + Q+++L + ++P+ +P+G +I++ +K+G + ++ +G TL Sbjct: 360 DLESGQDQILTQTEMDESPSVAPNGSMIIYATQKNGKGVLAVVGVN-SGSKYTLPAQFGD 418 Query: 437 ASDPQWVGFM 446 +P W ++ Sbjct: 419 VREPAWSPYI 428 >gi|327481491|gb|AEA84801.1| translocation protein TolB [Pseudomonas stutzeri DSM 4166] Length = 433 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 113/436 (25%), Positives = 208/436 (47%), Gaps = 18/436 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKV-----SEVVSKDLQ 74 LLVL+ ++ + S + IA F GG V +E++ D++ Sbjct: 8 LLVLLCCLAGIAVAQEKNIVVTSGADRAIPIAVVPF---GWQGGTVLPEDMAEIIGNDMR 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 + +F I + + T I ++DW +LGAQ ++ G + G RL+ + +++V Sbjct: 65 NTGIFQPIPRQNMISMPTRGSEI-IYRDWKALGAQYVMVGNIEPAG-GRLQARYEVFNVT 122 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI-IKNSL 193 +Q++ SP R +AH +D ++ +TG KG F++R+L+V+ + G + +L Sbjct: 123 TEQQVMSGTVGGSPDQLRDMAHHAADQSFEKLTGIKGAFSTRLLYVTAERMGGANTRYTL 182 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 D DGA L SR+ IL PR+SP+ +++AY +++ + R+++ R ++I Sbjct: 183 QRSDYDGARAVTLLQSREPIL-SPRYSPDGRRIAYVSFEQKRP-RIFVQHIDTGRR-EQI 239 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF + AP FS +G R + KD +IY +DL S +RLTN I+ + D Sbjct: 240 TNFEGLNGAPAFSPDGNRLAFVLSKDGNPEIYVMDLGSRQLQRLTNHYAIDTEPFWGADG 299 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFA 372 I + SDR GK Q+Y + + +R++ + + + + L+ + G F Sbjct: 300 QTIYYTSDRAGKPQIYKQRLGSNSAERVTFVGNYNANPKLSADEKTLVMIHRQDGYTNFK 359 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + R+L + S ++PT +P+G LI++ ++ G L + +NGR + Sbjct: 360 VAAQDLQRGNLRILSDTSLDESPTVAPNGTMLIYATRQQGR--GVLMLVSINGRVRLPLP 417 Query: 433 TP-AYASDPQWVGFMD 447 T +P W +++ Sbjct: 418 TAQGEVREPSWSPYLN 433 >gi|197121110|ref|YP_002133061.1| TolB domain protein [Anaeromyxobacter sp. K] gi|226705865|sp|B4UDE1|TOLB_ANASK RecName: Full=Protein tolB; Flags: Precursor gi|196170959|gb|ACG71932.1| TolB domain protein [Anaeromyxobacter sp. K] Length = 434 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 195/406 (48%), Gaps = 24/406 (5%) Query: 38 VATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + S ++ P+ IA F + G + +EVV DL S +F+++ F + Sbjct: 28 IVVGSPDFRPLPIAVAAFQGEGDAGVAATQTAEVVRADLVLSGLFDVLDPRGFLADPSEG 87 Query: 95 DSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + P RF W +GA L RV + G L E L++V+ ++++ K A R Sbjct: 88 FAAPSIRFARWADVGADGLAKARV-RRGPAGLEGELHLYEVRAGREVLVKLLRVDGADAR 146 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +AH ++D+I + T E G F +RI ++ G L D DG N + L R Sbjct: 147 SLAHRMADEIVRYYTREPGIFATRI----AAIRRGRGTWELVTQDMDGGNQQVLLSER-S 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRIGNFRSMILAPRFSSNGKR 271 IL P + P+ +++ +Y R L R DRA + +G R+ +S +G R Sbjct: 202 ILMSPAWRPDGREILVTSYRSG---RPELWAYRFSDRAFRPLGRHRNA-FGGVYSPDGSR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +V + D++ + +LT+ I++S ++SPD +I F SDR G Q+YVM Sbjct: 258 IAFTVSEGNVTDLWVMSADGVGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVM 317 Query: 332 QSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED 389 ++GS +R++ + +Y P WSP+GDLIAFT K F + V+ D + +D Sbjct: 318 GADGSGARRLT--FQGNYNQTPQWSPRGDLIAFTARDERKVFDVFVVSPDSGAINRITQD 375 Query: 390 SNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + P+W+P+GR +IF ++G G +L D G +T + + Sbjct: 376 QGRTNEEPSWAPNGRLMIFRTDRNG--GIQLVVSDARGDRQTPVTS 419 >gi|301384814|ref|ZP_07233232.1| translocation protein TolB [Pseudomonas syringae pv. tomato Max13] gi|302063532|ref|ZP_07255073.1| translocation protein TolB [Pseudomonas syringae pv. tomato K40] gi|302130604|ref|ZP_07256594.1| translocation protein TolB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016445|gb|EGH96501.1| translocation protein TolB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 433 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E+VS Sbjct: 2 INLFRGLLVVLCFASAMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVSN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|330811387|ref|YP_004355849.1| Colicin import protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379495|gb|AEA70845.1| Colicin import protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 433 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/415 (25%), Positives = 206/415 (49%), Gaps = 10/415 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ + L ++E++ DL+ S + I + + T Sbjct: 26 ILVTSGSDRATPIAVVPFGWQGGSVLPDDMAEIIGNDLRNSGYYAPIPKQNMISLPTQAS 85 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + ++DW +LGAQ ++ G ++ G RL+V++ L++V +Q++ S R ++ Sbjct: 86 EV-IYRDWKALGAQYIMVGSIVPAG-GRLQVQYALFNVATEQQVLTGSVSGSVDQLRDMS 143 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D ++ +TG KG F++R+L+V+ E + +L D DGA L SR+ IL Sbjct: 144 HYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTRYTLQRSDYDGARAVTLLQSREPIL 203 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ R ++I NF + AP +S +G R Sbjct: 204 -SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR-EQITNFEGLNGAPAWSPDGSRLAF 260 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD DIY ++L S + R+TN IN + D S I F SDR GK Q+Y + Sbjct: 261 VLSKDGNPDIYVMNLASRSISRVTNGPGINTEPFWGKDGSTIYFTSDRGGKPQIYKTSAG 320 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQ 393 G +R++ + + + + L+ + G F + ++L + + + Sbjct: 321 GGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFTNFKVAAQDLQRGSVKILTDSTLDE 380 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 381 SPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 433 >gi|302187151|ref|ZP_07263824.1| translocation protein TolB [Pseudomonas syringae pv. syringae 642] gi|330936711|gb|EGH40899.1| translocation protein TolB [Pseudomonas syringae pv. pisi str. 1704B] gi|330950602|gb|EGH50862.1| translocation protein TolB [Pseudomonas syringae Cit 7] Length = 433 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 116/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|330872647|gb|EGH06796.1| translocation protein TolB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 433 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASGMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLNGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|28871117|ref|NP_793736.1| tolB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|32699697|sp|Q87Y40|TOLB_PSESM RecName: Full=Protein tolB; Flags: Precursor gi|28854367|gb|AAO57431.1| tolB protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 433 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASAMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|104783067|ref|YP_609565.1| translocation protein TolB [Pseudomonas entomophila L48] gi|122402282|sp|Q1I6F4|TOLB_PSEE4 RecName: Full=Protein tolB; Flags: Precursor gi|95112054|emb|CAK16781.1| TolB protein precursor [Pseudomonas entomophila L48] Length = 433 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/435 (25%), Positives = 209/435 (48%), Gaps = 11/435 (2%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L +LL + G + + V + S +P+++ L +++++S DL+ Sbjct: 7 GLLVLLCCVAGM-AMAEEKNILVTSGSDRATPIAVVPFGVQGGSVLPEDMADIISNDLRN 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S + I + + T + F+DW +LGAQ ++ G ++ G RL+V + L++V Sbjct: 66 SGYYGPIPRQNMISLPTQASEV-IFRDWKALGAQYVMVGSIVPSG-GRLQVSYALFNVAT 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLC 194 +Q++ R +AH I+D ++ +TG KG F++R+L+V+ E + + +L Sbjct: 124 EQQVLTGSVAGGVDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQ 183 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R ++I Sbjct: 184 RSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFIQHIDTGRR-EQIT 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF + AP +S +G R + KD DIY +++ S R+T IN + D + Sbjct: 241 NFEGLNGAPAWSPDGTRLAFVLSKDGNPDIYVMNVASRQITRVTAGPGINTEPFWGKDGN 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAI 373 + F SDR GK Q+Y G +R++ + + + + L+ + G F + Sbjct: 301 TLYFTSDRGGKPQIYKQSVGGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQGFTNFKV 360 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 ++L E S ++PT +P+G LI++ ++ G L + LNGR + T Sbjct: 361 AAQDLQRGSVKILTETSLDESPTVAPNGTMLIYATRQQGR--GVLMLVSLNGRVRLPLPT 418 Query: 434 P-AYASDPQWVGFMD 447 +P W +++ Sbjct: 419 AQGEVREPSWSPYLN 433 >gi|330964830|gb|EGH65090.1| translocation protein TolB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 433 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/440 (26%), Positives = 219/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASGMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|66044663|ref|YP_234504.1| translocation protein TolB [Pseudomonas syringae pv. syringae B728a] gi|75502949|sp|Q4ZWK6|TOLB_PSEU2 RecName: Full=Protein tolB; Flags: Precursor gi|63255370|gb|AAY36466.1| TolB, N-terminal:TolB, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330968885|gb|EGH68951.1| translocation protein TolB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 433 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/440 (26%), Positives = 218/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + L ++E++S Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGSVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|146283138|ref|YP_001173291.1| translocation protein TolB [Pseudomonas stutzeri A1501] gi|145571343|gb|ABP80449.1| TolB protein [Pseudomonas stutzeri A1501] Length = 384 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 193/386 (50%), Gaps = 10/386 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++E++ D++ + +F I + + T I ++DW +LGAQ ++ G + G RL Sbjct: 6 MAEIIGNDMRNTGIFQPIPRQNMISMPTRGSEI-IYRDWKALGAQYVMVGNIEPAG-GRL 63 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + + +++V +Q++ SP R +AH +D ++ +TG KG F++R+L+V+ Sbjct: 64 QARYEVFNVTTEQQVMSGTVGGSPDQLRDMAHHAADQSFEKLTGIKGAFSTRLLYVTAER 123 Query: 185 VSGI-IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + G + +L D DGA L SR+ IL PR+SP+ +++AY +++ + R+++ Sbjct: 124 MGGANTRYTLQRSDYDGARAVTLLQSREPIL-SPRYSPDGRRIAYVSFEQKRP-RIFVQH 181 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R ++I NF + AP FS +G R + KD +IY +DL S +RLTN I Sbjct: 182 IDTGRR-EQITNFEGLNGAPAFSPDGNRLAFVLSKDGNPEIYVMDLGSRQLQRLTNHYAI 240 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + + D I + SDR GK Q+Y + + +R++ + + + + L+ Sbjct: 241 DTEPFWGADGQTIYYTSDRAGKPQVYKQRLGSNSAERVTFVGNYNANPKLSADEKTLVMI 300 Query: 364 TKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + G F + R+L + S ++PT +P+G LI++ ++ G L + Sbjct: 301 HRQDGYTNFKVAAQDLQRGNLRILSDTSLDESPTVAPNGTMLIYATRQQGR--GVLMLVS 358 Query: 423 LNGRNETLINTP-AYASDPQWVGFMD 447 +NGR + T +P W +++ Sbjct: 359 INGRVRLPLPTAQGEVREPSWSPYLN 384 >gi|237800226|ref|ZP_04588687.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806414|ref|ZP_04593118.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023083|gb|EGI03140.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027527|gb|EGI07582.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 433 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 120/443 (27%), Positives = 220/443 (49%), Gaps = 21/443 (4%) Query: 15 INL--CLLLVLIGGFFPTSIHAF----VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 INL LL+VL F + I A + V + S +P+++ + L ++E+ Sbjct: 2 INLFRGLLVVLC---FASGIVAAEEKNILVTSGSDRAAPIAVVPFGWQGGSVLPEDMAEI 58 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 VS DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ Sbjct: 59 VSNDLRNSGYYAPIPKQNMISLPTQGSEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQY 116 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSG 187 L++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E Sbjct: 117 ALFNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSEN 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ Sbjct: 177 NTRYTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTG 234 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ Sbjct: 235 RR-EQITNFEGLNGAPAWSPDGNKLAFVLSKDGNPEIYVINLASRQLSRVTNDGAIDTEP 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + D S + F SDR GK Q+Y NG +R++ + + + + L+ + Sbjct: 294 FFGKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQD 353 Query: 368 G-EKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NG Sbjct: 354 GFTNFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSING 410 Query: 426 RNETLINTP-AYASDPQWVGFMD 447 R + T +P W +++ Sbjct: 411 RVRLPLPTAQGEVREPSWSPYLN 433 >gi|153003575|ref|YP_001377900.1| TolB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027148|gb|ABS24916.1| TolB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 437 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 107/381 (28%), Positives = 192/381 (50%), Gaps = 21/381 (5%) Query: 41 NSANYSPVSIAFTKFVS--IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP 98 S ++ P+ IA +F D V+EVV DL S +F+++ F + + P Sbjct: 33 GSPSFQPLPIAVAQFQGEGGDARAAGVTEVVRGDLSLSGLFDVLDPRGFLADPSEGWAAP 92 Query: 99 --RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 RF W+ +GA+ LV R+ + G D L E L++V+ ++++ K+ ++ + R + H Sbjct: 93 TIRFARWSDVGAEGLVKARMRQAG-DELEAELHLYEVRAGREVLVKRLRAAASDPRALGH 151 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ISD+I + T E G F+++++ + + + G + L + D DG N R L R IL Sbjct: 152 RISDEIVRYYTREPGIFSTKLVAIRK--LRGHWE--LVMFDVDGKNPRVLLSER-TILLA 206 Query: 217 PRFSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P + P+ + V +Y L +Y + R R I N + +S +G R + Sbjct: 207 PCWRPDGRAVLLTSYRSGRPELWLYTLADRGFRRLAAIPNAYGGV----YSPDGTRVAFT 262 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D++ ++ +RLT +++S S+SPD +++ F SDR G Q+Y+M ++G Sbjct: 263 ITDRANSDVWVMNADGTGAKRLTREPALDLSPSWSPDGTRLAFVSDRSGTPQIYLMGADG 322 Query: 336 SDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVEDSNL- 392 S +R++ + +Y P WSP+GD IAFT K F + V+ + + + + +D Sbjct: 323 SSPRRLT--FQGNYNQTPAWSPRGDAIAFTARDERKVFDVFVVSPENGKIQRVTQDQGRT 380 Query: 393 -QAPTWSPSGRSLIFSRKKDG 412 + PTW+P+GR + + G Sbjct: 381 NEEPTWAPNGRLMALKTDRAG 401 >gi|109899246|ref|YP_662501.1| TolB-like [Pseudoalteromonas atlantica T6c] gi|123360547|sp|Q15RP1|TOLB_PSEA6 RecName: Full=Protein tolB; Flags: Precursor gi|109701527|gb|ABG41447.1| TolB-like protein [Pseudoalteromonas atlantica T6c] Length = 451 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 39/456 (8%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L V++ S+ + +SA P++I K+ ++ +SEVVS DL RS Sbjct: 8 LTFLSVVLTASSQASLEIVITEGIDSAR--PIAIVPFKWNGPGQMPESLSEVVSGDLLRS 65 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F+ I + N + + + W + G + ++ G V EG DR RV F L D R Sbjct: 66 GKFSPIDSTDMPGQPHNDNEL-DYSAWAATGVEAILVGSVTPEGPDRYRVNFTLVDAI-R 123 Query: 137 KQIIG---------------------KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 QI G ++ + +R+ AH ISD +Y+ +TGEKG F + Sbjct: 124 GQITGGNARALSGGKLTNSNDHILDSRQTVITGQGFRQYAHRISDVVYEKLTGEKGAFMT 183 Query: 176 RILFVSESVVSGIIKNS----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 RI +V VV N L V D DG N L S++ L P +SP+ K+AY T+ Sbjct: 184 RIAYV---VVRDRKTNEFPYQLVVADYDGVNETMLLRSKEP-LMSPSWSPDGTKLAYVTF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +++ ++Y+ D + ++ +F + AP FS NG++ + + KD +IY +D+ S Sbjct: 240 ENKRS-QIYIQDL-YTMSRTQMTDFPGINSAPVFSPNGRQLAMVLSKDGNPEIYVMDVAS 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 ER+T I+ S++PD ++F S+R GK Q+Y + ++ +R++ D E + Sbjct: 298 KRLERITRNRAIDTEPSWTPDGKSLIFSSERGGKPQIYRVDLASNNVRRVTFDGEMNLGG 357 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +P G + + + I + ++L + ++P+ +P+G +I+S Sbjct: 358 TI-TPDGGRMVMVNRTRGNYHIAAQDLENGNIQVLTKTYLDESPSIAPNGSMIIYSTLHQ 416 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L S+D GR L + P W F+ Sbjct: 417 GKQVLSLVSLD--GRFKARLPASDGQVKSPSWSPFL 450 >gi|303256190|ref|ZP_07342206.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderiales bacterium 1_1_47] gi|331001246|ref|ZP_08324872.1| Tol-Pal system beta propeller repeat protein TolB [Parasutterella excrementihominis YIT 11859] gi|302860919|gb|EFL83994.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderiales bacterium 1_1_47] gi|329568973|gb|EGG50769.1| Tol-Pal system beta propeller repeat protein TolB [Parasutterella excrementihominis YIT 11859] Length = 437 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 118/427 (27%), Positives = 196/427 (45%), Gaps = 18/427 (4%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + L I P FV + AN P IA F E ++E++ DL RS Sbjct: 22 AVGLAGIAAAEPAFAQLFVNIQGVGANQFP--IAIQPFFGNSEAPENIAEIIGNDLVRSG 79 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F L+S D+ T D P ++ ++ G G V + R ++FRL+D ++ Sbjct: 80 FFRLVSCDA----ATALDKDPDWKALSTAGVGAFADGSVTRAADGRYEIKFRLFDPVKKQ 135 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + + S R AH I+D I++ +TGEKGDF +RI +VS+ G ++ V D Sbjct: 136 ETDEASYISPKDDLRLYAHKIADRIFERLTGEKGDFATRIAYVSQ---QGKNNYAIMVAD 192 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG N + R I+ +SPN +++AY +++ V++ D + +++ FR Sbjct: 193 SDGYNPQVALRIRHPII-SIDWSPNGRQIAYTSFETGKPT-VWIHDLSTGKR-RQVAAFR 249 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP FS +G +++ KD IY +D+ + T I+ ++SPD I Sbjct: 250 GNNSAPAFSPDGGTLAVALSKDGGTKIYLLDVNGQNLRQFTTGSSIDTEPAFSPDGKYIY 309 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G Q+Y G +RIS A P SP+ D +A+ +G F + ++ Sbjct: 310 FTSDRGGNPQIYRKPVVGGSAERISFG-NAYAISPAVSPKNDQVAYIVRTGGHFKL--VQ 366 Query: 378 KDGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 +D + + L E ++P++SP+G +I++ + G S D + R+ L T Sbjct: 367 QDLATGNVIPLSEIGKNESPSYSPNGNMIIYASEVGGKGVLSTVSTDGSTRSR-LSGTSG 425 Query: 436 YASDPQW 442 +P W Sbjct: 426 DIREPSW 432 >gi|114330316|ref|YP_746538.1| translocation protein TolB [Nitrosomonas eutropha C91] gi|114307330|gb|ABI58573.1| TolB, N-terminal domain protein [Nitrosomonas eutropha C91] Length = 423 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 190/378 (50%), Gaps = 17/378 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ AN P+++A F L +S +VS DL+RS +F L+ D P Sbjct: 26 IEIFGGGANRMPIAVA--PFNGEKGLPQDISAIVSADLERSGIFKLV--DPLGLTSQEPV 81 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 S + DW GA LV G R+ ++FRL DV + Q+ G + R A Sbjct: 82 S---YVDWLGRGASALVIGSTSMLPDGRVDIQFRLLDVAKQVQLTGFSGTVTIEQLRAFA 138 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D +Y+++T E G F++RI FV + + +L V D DG N R L + I+ Sbjct: 139 HRIADIVYEALTNEPGVFSTRIAFVRKQGS----RYALQVSDYDGFNARSLIEYTEPII- 193 Query: 216 EPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ K+AY +++ + ++ V + TR +R K + NF+ AP +S +G + + Sbjct: 194 SPAWSPDGSKIAYTSFEKKKPVVYVQALATR-ER--KVVANFKGSNSAPAWSPDGGKLAV 250 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + IY ++ + +R++ + I+ S+SPD ++F SDR G Q+Y M + Sbjct: 251 VLTLHGGSQIYLINADGSGLQRISQSPGIDTEPSFSPDGKWLIFTSDRGGSPQIYRMPVS 310 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R++ + + + P +S G + + +F++ V Q +LL + S ++ Sbjct: 311 GGAAERLTFEGDYN-VSPRYSSDGKRFVYIHRNSGRFSVAVQDLSTRQMQLLTDSSFDES 369 Query: 395 PTWSPSGRSLIFSRKKDG 412 P++SP+ R ++++ + G Sbjct: 370 PSFSPNSRMVLYTTEVSG 387 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + +++ DG+ ++ ++ S I EP FSP+ + + + T D ++Y M A +R Sbjct: 260 IYLINADGSGLQRISQS-PGIDTEPSFSPDGKWLIF-TSDRGGSPQIYRMPVS-GGAAER 316 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + ++PR+SS+GKR + + + DL + + LT++ F + S S+SP+ Sbjct: 317 LTFEGDYNVSPRYSSDGKRFVYIHRNSGRFSVAVQDLSTRQMQLLTDSSF-DESPSFSPN 375 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 S +++ ++ G+ L ++ S+G + R SQ+ + VW P Sbjct: 376 SRMVLYTTEVSGRGILSIVSSDGQTRSRFSQEA-GDVREAVWGP 418 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 13/142 (9%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S++I F + + L V +G + + + + E P WSP G IA+T F +K Sbjct: 157 STRIAFVRKQGSRYALQVSDYDGFNARSLIEYTEP-IISPAWSPDGSKIAYTSFEKKKPV 215 Query: 373 IGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + V + ++ER +V + + AP WSP G L G GS++Y I+ +G Sbjct: 216 VYV-QALATRERKVVANFKGSNSAPAWSPDGGKLAVVLTLHG--GSQIYLINADGSGLQR 272 Query: 431 INT-------PAYASDPQWVGF 445 I+ P+++ D +W+ F Sbjct: 273 ISQSPGIDTEPSFSPDGKWLIF 294 >gi|121998996|ref|YP_001003783.1| translocation protein TolB [Halorhodospira halophila SL1] gi|121590401|gb|ABM62981.1| TolB, N-terminal domain protein [Halorhodospira halophila SL1] Length = 436 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 190/365 (52%), Gaps = 11/365 (3%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 +++ +++ +L R+ F+++ ++ + + RF W + G LV G + G R Sbjct: 59 ELAPIITANLARTGRFDILPEEDLVDTPGRMEDV-RFSTWRAQGVDHLVVGGIDDAGDGR 117 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-E 182 V F + D ++ G+++ + R +AHTISD IY++IT +G F RI +V+ E Sbjct: 118 YEVRFEVLDAFQGQRTDGRRYRAEERHLRTLAHTISDRIYETITDREGTFTKRIAYVAVE 177 Query: 183 SVVSGI-IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 G ++ L V D DG + + S D+ L P +SP++ ++AY +++ V++ Sbjct: 178 QREDGEGRRHRLVVADSDGHRPQTILTS-DEPLLSPAWSPSRDRLAYVSFEGRR-SEVFV 235 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + R +R+ +FR + AP +S +G + +++ +D A +IY +D+ S LT+ Sbjct: 236 QEIRTGER-ERVASFRGINSAPAWSPDGDQLAVTLSRDGAANIYLIDVASGDVRPLTDHW 294 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ A++ PD I F SDR G+ Q+Y +GS+ +R++ D A P SP G+ + Sbjct: 295 AIDTEATWGPDGDWIYFTSDRGGRPQIYRTPPDGSETERVTYDG-AYNARPSISPDGERM 353 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-GSKLYS 420 A ++ I + D +++ + ++P+++P+G +I++ GDT G +L + Sbjct: 354 AMVHRHDGQYYIALQDLDTEAVQIISDGPADESPSFAPNGDLVIYTT---GDTEGQRLAT 410 Query: 421 IDLNG 425 + G Sbjct: 411 ASVIG 415 >gi|213969191|ref|ZP_03397330.1| translocation protein TolB [Pseudomonas syringae pv. tomato T1] gi|213926189|gb|EEB59745.1| translocation protein TolB [Pseudomonas syringae pv. tomato T1] Length = 416 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 110/416 (26%), Positives = 209/416 (50%), Gaps = 12/416 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ + + L ++E+VS DL+ S + I + + T Sbjct: 9 ILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVSNDLRNSGYYAPIPKQNMISLPTQAS 68 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + F+DW +LGAQ ++ G + G RL++++ L++V +Q++ + R +A Sbjct: 69 EV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALFNVATEQQVLTGNVSGTNDQLRDMA 126 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D ++ +TG KG F++R+L+V+ E + +L D DGA L SR+ IL Sbjct: 127 HYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTRYTLQRSDYDGARAVTLLQSREPIL 186 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ R ++I NF + AP +S +G + Sbjct: 187 -SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR-EQITNFEGLNGAPAWSPDGSKLAF 243 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD +IY ++L S R+TN I+ + D S + F SDR GK Q+Y N Sbjct: 244 VLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFGKDGSTLYFTSDRGGKPQIYKTNIN 303 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNL- 392 G +R++ + + + + L+ + G F + V ++L DSNL Sbjct: 304 GGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFTNFKVAVQDLARGSVKILT-DSNLD 362 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 ++PT +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 363 ESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 416 >gi|229160030|ref|ZP_04288034.1| WD40-like Beta Propeller [Bacillus cereus R309803] gi|228623467|gb|EEK80289.1| WD40-like Beta Propeller [Bacillus cereus R309803] Length = 298 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 142/256 (55%), Gaps = 8/256 (3%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + VM+ DG+N +T + D FEP +SP+ QK+A+++ D +I +Y+M+ Sbjct: 47 IYVMNPDGSNQTNITNNPDN-DFEPTWSPDGQKIAFSSIRDGNI-EIYVMNADGSNQ-TN 103 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I N + L P +S +G++ S +D +IY +++ RLTN + ++SPD Sbjct: 104 ITNNPNDDLEPAWSPDGQKIAFSSFRDGNSEIYVMNVDGTNQTRLTNNPASDSKPTWSPD 163 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +I F S+R G ++YVM +NGS+Q I+ + + F+P WSP G IAFT E Sbjct: 164 GQKIAFSSNRNGPLEIYVMNANGSNQTNITNNPDGD-FEPAWSPDGQKIAFTSVRNENLE 222 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I V+ DGS Q RL + PTWSP G+ + FS ++G+ ++Y ++ +G N+T I Sbjct: 223 IYVINVDGSNQTRLTNSQGDNSLPTWSPDGQKIAFSSTRNGN--REIYVMNADGSNQTNI 280 Query: 432 -NTPAYASDPQWVGFM 446 N PA S+P W FM Sbjct: 281 TNNPAADSEPAWSPFM 296 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 19/208 (9%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 I+ K I + R ++++ + S +D +IY ++ + +TN + Sbjct: 17 INMCCKTICSIRKVVIS--------KIAFSSNRDGNFEIYVMNPDGSNQTNITNNPDNDF 68 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++SPD +I F S R+G ++YVM ++GS+Q I+ + +P WSP G IAF+ Sbjct: 69 EPTWSPDGQKIAFSSIRDGNIEIYVMNADGSNQTNITNNPNDD-LEPAWSPDGQKIAFSS 127 Query: 366 FSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I VM DG+ Q RL ++ PTWSP G+ + FS ++G ++Y ++ N Sbjct: 128 FRDGNSEIYVMNVDGTNQTRLTNNPASDSKPTWSPDGQKIAFSSNRNGPL--EIYVMNAN 185 Query: 425 GRNETLINT-------PAYASDPQWVGF 445 G N+T I PA++ D Q + F Sbjct: 186 GSNQTNITNNPDGDFEPAWSPDGQKIAF 213 >gi|330959271|gb|EGH59531.1| translocation protein TolB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 433 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 217/440 (49%), Gaps = 15/440 (3%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + L ++E+VS Sbjct: 2 INLFRGLLVVLCFASGMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGSVLPEDMAEIVSN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSESNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQRRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMNLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + V ++L DSNL ++PT +P+G +I++ ++ G L + +NGR Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQQGR--GVLMLVSINGRVR 413 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 LPLPTAQGEVREPSWSPYLN 433 >gi|15596169|ref|NP_249663.1| translocation protein TolB [Pseudomonas aeruginosa PAO1] gi|12644681|sp|P50601|TOLB_PSEAE RecName: Full=Protein tolB; Flags: Precursor gi|9946879|gb|AAG04361.1|AE004530_14 TolB protein [Pseudomonas aeruginosa PAO1] gi|5733837|gb|AAC44661.2| TolB [Pseudomonas aeruginosa] Length = 432 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 114/414 (27%), Positives = 202/414 (48%), Gaps = 30/414 (7%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQKITNPDSIPRF 100 P+++ F + L +S ++ DL+ S F N+ISQ + ++ F Sbjct: 36 PIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVI-------F 88 Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISD 160 +DW ++G ++ G ++ G RL+V++ L+DV +Q++ S R ++H I+D Sbjct: 89 RDWKAVGVNYVMVGNIVPAGG-RLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIAD 147 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEP 217 ++ +TG KG F++++L+V+ S + N+ + R DGA L SR+ I+ P Sbjct: 148 QSFEKLTGIKGAFSTKMLYVTAERFS--VDNTRYTLQRSDYDGARPVTLLQSREPIV-SP 204 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 RFSP+ +++AY +++ + R+++ R ++I NF + AP FS +G R + Sbjct: 205 RFSPDGRRIAYVSFEQKRP-RIFIQYVDTGRR-EQITNFEGLNGAPAFSPDGNRLAFVLS 262 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D +IY +DL S A RLTN L I+ + D S + F SDR GK Q+Y M N Sbjct: 263 RDGNPEIYVMDLGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGA 322 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPT 396 R++ + + + + L+ + G F I R+L + +PT Sbjct: 323 VDRVTFIGNYNANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPT 382 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFMD 447 +P+G LI++ ++ D G L + +NGR I P D P W +++ Sbjct: 383 VAPNGTMLIYATRQQ-DRGV-LMLVSINGR--VRIPLPTAQGDVREPSWSPYLN 432 >gi|107100428|ref|ZP_01364346.1| hypothetical protein PaerPA_01001453 [Pseudomonas aeruginosa PACS2] gi|116048897|ref|YP_792302.1| translocation protein TolB [Pseudomonas aeruginosa UCBPP-PA14] gi|218893057|ref|YP_002441926.1| translocation protein TolB [Pseudomonas aeruginosa LESB58] gi|254239320|ref|ZP_04932643.1| TolB protein [Pseudomonas aeruginosa C3719] gi|254245255|ref|ZP_04938577.1| TolB protein [Pseudomonas aeruginosa 2192] gi|296390669|ref|ZP_06880144.1| translocation protein TolB [Pseudomonas aeruginosa PAb1] gi|313105859|ref|ZP_07792122.1| TolB protein [Pseudomonas aeruginosa 39016] gi|115584118|gb|ABJ10133.1| TolB protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126171251|gb|EAZ56762.1| TolB protein [Pseudomonas aeruginosa C3719] gi|126198633|gb|EAZ62696.1| TolB protein [Pseudomonas aeruginosa 2192] gi|218773285|emb|CAW29097.1| TolB protein [Pseudomonas aeruginosa LESB58] gi|310878624|gb|EFQ37218.1| TolB protein [Pseudomonas aeruginosa 39016] Length = 432 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 114/414 (27%), Positives = 202/414 (48%), Gaps = 30/414 (7%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQKITNPDSIPRF 100 P+++ F + L +S ++ DL+ S F N+ISQ + ++ F Sbjct: 36 PIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVI-------F 88 Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISD 160 +DW ++G ++ G ++ G RL+V++ L+DV +Q++ S R ++H I+D Sbjct: 89 RDWKAVGVNYVMVGNIVPAGG-RLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIAD 147 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEP 217 ++ +TG KG F++++L+V+ S + N+ + R DGA L SR+ I+ P Sbjct: 148 QSFEKLTGIKGAFSTKMLYVTAERFS--VDNTRYTLQRSDYDGARPVTLLQSREPIV-SP 204 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 RFSP+ +++AY +++ + R+++ R ++I NF + AP FS +G R + Sbjct: 205 RFSPDGRRIAYVSFEQKRP-RIFIQYVDTGRR-EQITNFEGLNGAPAFSPDGNRLAFVLS 262 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D +IY +DL S A RLTN L I+ + D S + F SDR GK Q+Y M N Sbjct: 263 RDGNPEIYVMDLGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGA 322 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPT 396 R++ + + + + L+ + G F I R+L + +PT Sbjct: 323 VDRVTFIGNYNANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPT 382 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFMD 447 +P+G LI++ ++ D G L + +NGR I P D P W +++ Sbjct: 383 VAPNGTMLIYATRQQ-DRGV-LMLVSINGR--VRIPLPTAQGDVREPSWSPYLN 432 >gi|258545747|ref|ZP_05705981.1| TolB protein [Cardiobacterium hominis ATCC 15826] gi|258518992|gb|EEV87851.1| TolB protein [Cardiobacterium hominis ATCC 15826] Length = 425 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 118/429 (27%), Positives = 202/429 (47%), Gaps = 22/429 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCLLL T+ HA V+V + A + IA + G K+ +++ DL Sbjct: 10 LGLCLLLPW------TAAHAQVEVNVSGAQVAARPIAILPVQG--DPGVKMDYIIASDLH 61 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 ++ +F + SF + +P ++ ++ W GA +V G + +G + +F L DV Sbjct: 62 KTGLFQPLDPKSFPENPASPAAL-QYPAWKQAGADYVVMG--MMQGGNA--GQFVLNDVN 116 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE-SVVSGIIKNSL 193 Q+ + + A R++AH +D I +TG++G F +++ +V E G + SL Sbjct: 117 SASQLANENLHDADA--RQLAHQAADWILYRLTGKRGVFGTQLAYVLEQGGAKGARRYSL 174 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DGAN R + S + IL P ++PN Q VA+ TY + ++ I + + Sbjct: 175 LVSDVDGANRREIYSSNEPIL-SPSWAPNGQAVAFVTYANH---HAQVVIQNIGGGSRVV 230 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + AP FS +G ++ DIY ++L S A RLT+ I+ ++SPD Sbjct: 231 AQGDGISSAPAFSPDGNYLAFVQSENNNPDIYLLNLASGAKSRLTDHAAIDTEPAFSPDG 290 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + I F SDR G Q+Y M NG +R+ S + SP G + T+ SG + I Sbjct: 291 NYIYFTSDRSGSPQIYRMSRNGGGAERVVSGSGYSANSDL-SPDGSSLVLTRQSGGGYQI 349 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 G + L + +++P+G+ +I++ K+ G + K+ + G +TL ++ Sbjct: 350 GTYDLASKRFDALTSGRLDEGASFAPNGQLIIYATKEGGRSVLKVIN-SKGGVAQTLSDS 408 Query: 434 PAYASDPQW 442 DP W Sbjct: 409 NGRLRDPAW 417 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 EP FSP+ + Y T D ++Y M +R +R+ + S +G +++ Sbjct: 283 EPAFSPDGNYI-YFTSDRSGSPQIYRM-SRNGGGAERVVSGSGYSANSDLSPDGSSLVLT 340 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 Q I + DL S + LT+ ++ AS++P+ I++ + G+ L V+ S G Sbjct: 341 RQSGGGYQIGTYDLASKRFDALTSGR-LDEGASFAPNGQLIIYATKEGGRSVLKVINSKG 399 Query: 336 SDQKRISQDKEASYFDPVWSP 356 + +S D DP W P Sbjct: 400 GVAQTLS-DSNGRLRDPAWGP 419 >gi|217969213|ref|YP_002354447.1| translocation protein TolB [Thauera sp. MZ1T] gi|217506540|gb|ACK53551.1| Tol-Pal system beta propeller repeat protein TolB [Thauera sp. MZ1T] Length = 425 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 115/413 (27%), Positives = 202/413 (48%), Gaps = 27/413 (6%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ A+ PV I F + L V++VV DL+RS +F LI P+ Sbjct: 29 IEITGTGASRFPVIIPI--FENEGRLPQSVTDVVRADLERSGLFTLIDTGPLPM----PE 82 Query: 96 SI-PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 S+ P S GA ++TG +I R V FRL+D + ++++ SPA R + Sbjct: 83 SVAPDLAAVRSRGADAVLTGSLIPMADGRYDVRFRLFDAQKQQELGAMSLPMSPAQNRLV 142 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D +Y+ +TG G F +RI +V +S + L + D DG N SR+ I+ Sbjct: 143 GHRIADFVYEKLTGLPGYFATRIAYVIKSGPN----FELQIADADGMNAATALRSREPII 198 Query: 215 FEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P +SP+ Q++AY +++ + I+ V+ + T R + NF+ AP +S +G + Sbjct: 199 -SPSWSPDGQRLAYVSFEQKKPIVYVHTLATGQRRV---VANFKGSNSAPSWSPDGSQLA 254 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + KD +Y++ + RL + I+ + D I F SDR G Q+Y + + Sbjct: 255 VVLTKDGLSQLYAIGADGSGVRRLAQSSGIDTEPFWGAD-GHIYFTSDRGGSPQIYRIPA 313 Query: 334 NGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 +G +R+S E +Y P S G L+AF + +F + V Q +L + + Sbjct: 314 SGGSAQRVS--FEGNYNVTPRLSFDGKLLAFITRNAGRFQVAVQDVATRQTTILTDSARD 371 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGR-NETLINTPAYASDPQW 442 ++P+++P+GR ++++ DTG + L ++ +GR + L A +P W Sbjct: 372 ESPSFAPNGRMILYAT----DTGGRGVLSAVSTDGRIRQRLTVQAADVREPAW 420 >gi|160898835|ref|YP_001564417.1| translocation protein TolB [Delftia acidovorans SPH-1] gi|160364419|gb|ABX36032.1| Tol-Pal system beta propeller repeat protein TolB [Delftia acidovorans SPH-1] Length = 441 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 103/390 (26%), Positives = 182/390 (46%), Gaps = 13/390 (3%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + IA F + K+S ++ DL+RS F + + T S Sbjct: 42 RVEVTGVGLTQLPIAIAAFKGEGQAPQKISAIIQADLERSGQFRAVDTAGVQLDET---S 98 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P W A L G + + R V FRLWDV + + G+ F + R +AH Sbjct: 99 RPDVAMWRQKSADSLAVGSITRLADGRYDVRFRLWDVVKGQDLGGQGFAVTTGDLRLVAH 158 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ISD IY+ +TGEKG F++RI +V+++ + L V D DG N + S + I+ Sbjct: 159 RISDYIYEKLTGEKGVFSTRIAYVTKAGSN----YRLWVADADGENAQSALSSPEPII-S 213 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP ++AY +++ + VY+ D R + + NFR AP +S +G +++ Sbjct: 214 PAWSPTGTQLAYVSFESRKPV-VYVHDVASGRR-RLVANFRGSNSAPAWSPDGNSLAVTL 271 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D +Y + Q RL + I+ ++S D I F SDR G Q+Y + ++G Sbjct: 272 SRDGGSQLYLISAQGGEPRRLMQSSGIDTEPNFSSDGRSIYFVSDRGGAPQIYKVPASGG 331 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +R++ + P SP G +A+ G F + VM + + + ++P+ Sbjct: 332 SAERVTFTGNYN-ISPSVSPDGKWLAYVSRVGGGFKLHVMDLGTGTVNAITDTTADESPS 390 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++P+ R ++++ + G L + L+G+ Sbjct: 391 FAPNSRLIVYATLQQGR--ESLMTTTLDGK 418 >gi|239815673|ref|YP_002944583.1| translocation protein TolB [Variovorax paradoxus S110] gi|239802250|gb|ACS19317.1| Tol-Pal system beta propeller repeat protein TolB [Variovorax paradoxus S110] Length = 408 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 114/412 (27%), Positives = 196/412 (47%), Gaps = 18/412 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + + IA F D K+SE+V DL+RS F + D+ Q + + S Sbjct: 9 RVEVSGVGLTQLPIALVPFKGQDASPQKISEIVQADLERSGQFRGV--DASGQAL-DEAS 65 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP-ASWRKIA 155 P W A LV G V + R V FRLWDV R Q +G + ++ P R + Sbjct: 66 RPDLALWRQRTADSLVVGSVTRLADGRFDVRFRLWDVV-RGQDLGGQSYTVPQGDLRLAS 124 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D +Y+ +TG+KG F++RI +V++ G + SL V D DG N + S + I+ Sbjct: 125 HRIADYVYEKLTGDKGIFSTRIAYVTK----GGSRYSLWVADADGENAQAALASPEPII- 179 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +S N Q++AY +++ + VY+ + + + + NFR AP ++ +G ++ Sbjct: 180 SPVWSSNGQQLAYVSFESRKPV-VYVHNVASGQR-RLLANFRGSNSAPAWAPDGGSLAVT 237 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +D +Y++ RLT + I+ YS D S I F SDR G Q+Y M ++G Sbjct: 238 LSRDGGSQLYTIPASGGEPRRLTQSASIDTEPVYSADGSTIYFVSDRGGAPQIYKMSASG 297 Query: 336 SDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 R++ +Y P S G +A+ G F + VM+ + + S ++ Sbjct: 298 GAPTRVT--FSGTYNISPSVSGDGRWLAYISRVGGAFKLHVMELATGNVSAITDTSADES 355 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 P+++P+ + ++++ G L + L+G+ L +P W F Sbjct: 356 PSFAPNSKLIVYATHLQGR--EALMTTTLDGKIKARLAGQGGDIREPDWGPF 405 >gi|82523864|emb|CAI78812.3| TolB protein [uncultured candidate division WS3 bacterium] Length = 464 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 111/392 (28%), Positives = 191/392 (48%), Gaps = 29/392 (7%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI-----TNPDSIPRFQDWNSLG 107 T +SI L + SE++ DL S + + +Q++ T+ D RF Sbjct: 72 TGPLSIRVLAHQASEILRNDLDTSGLIQTTGGSTLRQELGLQTLTSVDLKKRFD------ 125 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 GR+ EG D + VE L+DV K + + +S +++R H ++D +++T Sbjct: 126 --AATQGRLTVEGSD-IVVEAELYDVPTEKMVASFRRRASESTFRSTIHQMADHFLRTLT 182 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 GE G ++I V E + G + +C MD DG N+ L + D L P +SP +VA Sbjct: 183 GETGIAETKIAVVRE--IGG--RMDICAMDYDGHNLVPLVENGDINLL-PAWSPLGNEVA 237 Query: 228 YATY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y +Y E L V ++T + KR+ + + +S +GK + + + +I+ Sbjct: 238 YTSYVGGEPALYVLNLETGVR---KRLATPGGLNTSAAWSPDGKSLAFAATRGKDPEIFV 294 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 V +++T I+ S ++SP+ +I F SDR G Q+YVM ++G++ +R++ E Sbjct: 295 VRRDGTVLDQITFHPAIDCSPTWSPNGHEIAFTSDRSGTPQIYVMSADGTNVRRLTY--E 352 Query: 347 ASYFD-PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSL 404 +Y D P WSP GD IAFT G +F I V+ G L + + + P W+P GR + Sbjct: 353 GNYSDSPAWSPSGDRIAFTSRIGGRFRICVIAAQGGPVYPLTDGPGDHENPAWAPDGRHV 412 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + + G S +Y ++ +G N I++ + Sbjct: 413 AYVSNEGGM--SAVYVVNADGTNRRRISSTPH 442 >gi|170723154|ref|YP_001750842.1| translocation protein TolB [Pseudomonas putida W619] gi|169761157|gb|ACA74473.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas putida W619] Length = 423 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 105/415 (25%), Positives = 206/415 (49%), Gaps = 10/415 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ L +++++ DL+ S ++ I + + + T Sbjct: 16 ILVTSGSDRATPIAVVPFGLQGGSVLPEDMADIIGNDLRNSGYYSPIPRQNMISQPTQAS 75 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q++ S R ++ Sbjct: 76 EV-IFRDWKALGAQYVMVGSIVPSG-GRLQVQYALFNVATEQQVLTGSVAGSVDQLRDMS 133 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D ++ +TG KG F++R+L+V+ E + + +L D DGA L SR+ IL Sbjct: 134 HYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDYDGARAVTLLQSREPIL 193 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ R +++ NF + AP +S +G R Sbjct: 194 -SPRFAPDGKRIAYVSFEQKRP-RIFIQHIDTGRR-EQVTNFEGLNGAPAWSPDGSRLAF 250 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD DIY +++ S R+T IN + D + + F SDR GK Q+Y + Sbjct: 251 VLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRGGKPQIYKQSVS 310 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQ 393 G +R++ + + + + L+ + G F + ++L E S + Sbjct: 311 GGSAERVTFVGNYNANPKLSADEKTLVMIHRQQGFTNFKVAAQDLQRGSVKILSETSLDE 370 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G LI++ ++ G L + LNGR + T +P W +++ Sbjct: 371 SPTVAPNGTMLIYATRQQGR--GVLMLVSLNGRVRLPLPTAQGEVREPSWSPYLN 423 >gi|326795239|ref|YP_004313059.1| protein tolB [Marinomonas mediterranea MMB-1] gi|326546003|gb|ADZ91223.1| Protein tolB [Marinomonas mediterranea MMB-1] Length = 432 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 103/433 (23%), Positives = 205/433 (47%), Gaps = 50/433 (11%) Query: 13 MKINLCLLLVLIGGFFPTSIHA--FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK+ L L+ + S+ A +++ + + P+++ ++ + L ++++V Sbjct: 1 MKLFKPLFLMFVMVITSQSVRAQLVIEITSGADQLLPIAVVPFEYSGANPLPEDIAQIVE 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS VF I + S + ++ D++ ++DW L A+ ++ G V+ +V F L Sbjct: 61 SDLLRSGVFETIPRASMLSEPSSSDNV-FYRDWRILKAEYILVGAVLNASNGNYQVAFEL 119 Query: 131 WDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +V ++++ K+ S +P+S+R AH ISD +YQ++TG KG F++RIL+V+ Sbjct: 120 LNVNTQQRVGNKEVISVTPSSFRDAAHFISDKVYQALTGIKGAFSTRILYVTAEGDRSAP 179 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG + + S++ IL P +S N + + Y + D +++ + + Sbjct: 180 NYKLQVADADGHRAQVIVESKEPIL-SPSWSRNGRFITYVMFRDRR-PNIFIQELATGKR 237 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + ++ + AP +S +GK+ + + KD ++Y +D+ + +R+TN I+ S+ Sbjct: 238 SK-VAQYKGLNGAPAWSPDGKKLALVLSKDNNPEVYVLDIATQKLDRMTNHYAIDTEPSW 296 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA---------------------- 347 PD I+F SDR G Q+Y + + +R++ + ++ Sbjct: 297 EPDGKGIIFTSDRGGNPQIYRLDVKSKEVERVTFEGDSNTRARMTPDGRYLVTVQKDSGN 356 Query: 348 ------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLL 386 +Y D P +P G ++ + G K + V+ DG + +L Sbjct: 357 YHIALQDMKNGRVTILTQTYLDESPSIAPNGSMVMYATTEGNKGILSVVSVDGLVKYKLP 416 Query: 387 VEDSNLQAPTWSP 399 + +++ P WSP Sbjct: 417 SSNGDVREPAWSP 429 >gi|254468571|ref|ZP_05081977.1| Tol-Pal system beta propeller repeat protein TolB [beta proteobacterium KB13] gi|207087381|gb|EDZ64664.1| Tol-Pal system beta propeller repeat protein TolB [beta proteobacterium KB13] Length = 425 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 112/418 (26%), Positives = 204/418 (48%), Gaps = 12/418 (2%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L + + P + + AN V++ + I+ ++ V+ DL RS Sbjct: 4 LAFLFITLFYLIPLPAIEVIDILGGKANELSVAVIPFQDDLIENEKNQIHNVIKSDLSRS 63 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F +I + T+ + + + W+ L ++LV GRV + G ++++V + L DV Sbjct: 64 GFFRVIDTGGVNKLPTSLNDV-DYSFWSGLQTELLVIGRV-QRGDNQIKVVYELIDVFKE 121 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 K ++ ++ + R+I H IS+ IY+ ITG KG F+++I FV + + K L V Sbjct: 122 KMMVSSEYSGNIKQDRQIGHQISNIIYEKITGSKGVFHTKIGFVQKINNN---KYQLNVS 178 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + + S +Q + R+SP+ +K+AY +++ + + +Y+ + + + + + NF Sbjct: 179 DMDGFNKKAIVTS-NQPIISTRWSPDGEKIAYVSFEKKKPV-IYVQNLK-NGERQLVANF 235 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP +S + K+ I + + IY ++ +RL + I+ ++PD I Sbjct: 236 KGNNSAPAWSPDNKQLAIVLTYNNFSQIYVMNADGKNIKRLMRSRSIDTEPVWAPDGKSI 295 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGV 375 F SDR G Q+Y + KR++ E Y P SP G L+ F F +GV Sbjct: 296 YFVSDRGGGPQIYKIDLKTEQIKRVT--FEGKYNVSPQLSPDGKLLTFITNDNGAFKVGV 353 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 +Q L + N +AP +SP+G ++++ KD + + L ++ LNG +INT Sbjct: 354 QNLISNQVIKLTQGRNDEAPVFSPNGHMVLYTH-KDSEKETSLSTVSLNGFKTQVINT 410 >gi|328953807|ref|YP_004371141.1| Protein tolB [Desulfobacca acetoxidans DSM 11109] gi|328454131|gb|AEB09960.1| Protein tolB [Desulfobacca acetoxidans DSM 11109] Length = 427 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 114/441 (25%), Positives = 209/441 (47%), Gaps = 26/441 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVS 66 +N+ I++ LLLV G S A + Y IA K S ELG ++ Sbjct: 1 MNVVISISLLLVWAGDGLAQSREYIDVRAPITKKYV---IATPKLQGPGGSGPELGAALA 57 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +DL+ S F ++ ++ P S + + ++LG +++ G +EG +L Sbjct: 58 VQADQDLRLSGHFTVLDPGTYDSSPIGPSPSTGQLHNLSALGCNLVIAGGWRQEG-GQLV 116 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++ +L D + ++GK++ +++ +++ +TGE+G R+ F+S Sbjct: 117 LDLKLIDPGSGQMLVGKRYRGGANDGQRMMTQFVNEVVLFLTGERGVPQGRLAFIS---- 172 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G L VMD G + LT R + P +SP+ Q+V + +Y +Y ++ Sbjct: 173 GGTDVRELYVMD-IGGTPKQLTRYRT-LTLTPSWSPDGQEVFFCSYRG-GFPALYAVNPG 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD--IYSVDLQSNATERLTNTLFI 303 +++ ++ + P + G R L++ +++ D IY +D Q N +RLT + I Sbjct: 230 SGSI-RKLSTHGTLNVTP---AGGPRGLLAATLNKSGDQEIYLLDRQGNIKQRLTQSPGI 285 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +IS ++SPD +Q+ F S+R G Q+Y++ + G +R++ + P WSP+GDLIA+ Sbjct: 286 DISPTFSPDGAQVAFVSNRGGNPQIYIVSTGGGQPRRLTFGGTYN-VSPAWSPRGDLIAY 344 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F I V+ G R + + + ++PTWSP G + S + G S +Y +++ Sbjct: 345 ASRTGGGFQIFVISPQGGGARQITREGSNESPTWSPDGSFIACSSTRGGT--SAIYLVNV 402 Query: 424 -NGRNETLINTPAYASDPQWV 443 G L P + P W Sbjct: 403 KTGTATRLTTMPGAQTQPAWA 423 >gi|89075797|ref|ZP_01162185.1| translocation protein TolB precursor [Photobacterium sp. SKA34] gi|89048529|gb|EAR54104.1| translocation protein TolB precursor [Photobacterium sp. SKA34] Length = 442 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 114/447 (25%), Positives = 209/447 (46%), Gaps = 25/447 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCL L+ + F + + +SA P+ + ++ +L +S V++ DLQ Sbjct: 6 MGLCLALLSVSQFAHAELELVITDGVDSAR--PIGVVPFQWEGEGKLPTDISAVIASDLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS F+ + + Q N I + W+ +G +VTG ++K V ++L D+ Sbjct: 64 RSGKFSPVPESKLPQLPHNESQI-DYSAWSKMGVDAVVTGTIVKNQDGNYTVNYQLVDIV 122 Query: 135 DRKQIIGKKFFSS-------------PASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 K G + + P R+ AH ISD IYQ +TGE+G F +RI +V Sbjct: 123 KGKLAAGTEGAAKGDYLLLNNQASVKPNRMRQYAHRISDLIYQKLTGERGAFLTRIAYVD 182 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + S L V D DG N R + S+ Q L P +SP+ K+AY +++ ++Y+ Sbjct: 183 NNR-SSKFPYQLRVADYDGYNERVVLKSK-QPLMSPAWSPDGSKLAYVSFESGKA-QIYV 239 Query: 242 MDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 +D I + + + N+ +P+FS +G + + + + ++ IY DL++ +LT+ Sbjct: 240 LD--IYKGTREVVANYPRHNGSPQFSPDGTKLAMVLSESGSLQIYIKDLKTKQLRQLTHG 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 N A ++PD + F SDR G+ Q+Y + D +R++ + A P +P G Sbjct: 298 RANNTEAVWAPDGQSLYFTSDRGGRPQVYHLDLATGDTQRVTW-QGAQNMGPQITPDGRY 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + S + I ++L + ++P+ +P+G +I+S ++ T +L Sbjct: 357 LVVVNRSDSGYNIAKQDLKTGAMQILTKARLAESPSIAPNGSMIIYSSAQNSGT-YELSL 415 Query: 421 IDLNGRNET-LINTPAYASDPQWVGFM 446 + ++GR + L +T P W F+ Sbjct: 416 VSIDGRFQARLPSTSKRVRAPSWGPFL 442 >gi|117619070|ref|YP_858094.1| beta-propeller repeat-containing to-pal system protein TolB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166988073|sp|A0KP93|TOLB_AERHH RecName: Full=Protein tolB; Flags: Precursor gi|117560477|gb|ABK37425.1| Tol-Pal system beta propeller repeat protein TolB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 441 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/444 (26%), Positives = 214/444 (48%), Gaps = 28/444 (6%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 CLLL G ++ + +SA P+++A K+ +L ++EVVS DL RS Sbjct: 12 CLLL---GQSAQAALDIVITGGIDSAR--PIAVAPFKWEGNGQLPQDIAEVVSNDLMRSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV---- 133 F +++ Q + I F W S G + +V G + G ++ F L DV Sbjct: 67 KFKPLARGQMPQTPSTSGEI-NFAPWASQGVEAVVVGSIAAVGDGTYKINFELVDVLKGQ 125 Query: 134 -------KDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 + I+ + + P A R+ AH ISD +Y+ +TGE+G F +R+ +VS V Sbjct: 126 LAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVS--VQ 183 Query: 186 SGI-IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G L + D DG N + L SR+ L P +SP+ K+AY +++++ +Y+ D Sbjct: 184 QGTQFPYQLRIADYDGYNEKTLLRSREP-LMSPAWSPDGSKLAYVSFENQKS-EIYVQDI 241 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + I +FR + AP +S +G+R I + KD + ++Y VD+ S R+T + I+ Sbjct: 242 YTQQR-SLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTTSRVID 300 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+ PD ++F S+R GK Q+Y + +R++ + E++ + +P G ++ Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASI-TPDGKIMVMV 359 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 ++ I + + +L + + ++P+ +P+G +I++ G L S D Sbjct: 360 TRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTD-- 417 Query: 425 GRNETLINTPA-YASDPQWVGFMD 447 GR + ++ T + P W F++ Sbjct: 418 GRFKAVLPTSSGEIRAPAWSPFLN 441 >gi|330828307|ref|YP_004391259.1| protein tolB [Aeromonas veronii B565] gi|328803443|gb|AEB48642.1| Protein tolB [Aeromonas veronii B565] Length = 441 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 119/444 (26%), Positives = 215/444 (48%), Gaps = 28/444 (6%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 CLLL G ++ + +SA P+++A K+ +L ++EVVS DL RS Sbjct: 12 CLLL---GQSAQAALDIVITGGIDSAR--PIAVAPFKWEGNGQLPQDIAEVVSNDLMRSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV---- 133 F +++ Q ++ I F W S G + +V G + G +V F L DV Sbjct: 67 KFKPLARGQMPQTPSSSSEI-NFAPWASQGVEAVVVGSISAVGDGTYKVNFELVDVLKGQ 125 Query: 134 -------KDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 + I+ + + P A R+ AH ISD +Y+ +TGE+G F +R+ +VS V Sbjct: 126 LAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVS--VQ 183 Query: 186 SGI-IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G L + D DG N + L SR+ L P +SP+ K+AY +++++ +Y+ D Sbjct: 184 QGTQFPYQLRISDYDGYNEKTLLRSREP-LMSPAWSPDGSKLAYVSFENQKS-EIYVQDI 241 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + I +FR + AP +S +G+R I + KD + ++Y VD+ S R+T + I+ Sbjct: 242 YTQQR-SLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTTSRVID 300 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+ PD ++F S+R GK Q+Y + +R++ + E++ + +P G ++ Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASI-TPDGKIMVMV 359 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 ++ I + + +L + + ++P+ +P+G +I++ G L S D Sbjct: 360 TRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTD-- 417 Query: 425 GRNETLINTPA-YASDPQWVGFMD 447 GR + ++ T + P W F++ Sbjct: 418 GRFKAVLPTSSGEIRAPAWSPFLN 441 >gi|71909662|ref|YP_287249.1| translocation protein TolB [Dechloromonas aromatica RCB] gi|71849283|gb|AAZ48779.1| TolB, N-terminal:WD40-like Beta Propeller [Dechloromonas aromatica RCB] Length = 437 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 18/409 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ AN PV+I F V+ V DL+RS +F L+ + P Sbjct: 40 IEITGAGANRIPVTI--VDFPGDPTAARVVTATVRADLERSGLFKLVDNGTAAFDENAPV 97 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + +W GA L G + + R+ FRL+D + + G + ++ + R Sbjct: 98 N---HAEWKGKGADALAAGSIARSTDGRMEARFRLYDTQKGVSLGGAAYVTNNSQLRAAG 154 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D IY+ +TGEKG F++RI +V V + L + D DG N S + I+ Sbjct: 155 HRIADFIYEKLTGEKGVFSTRIAYV----VKARGQFLLQIADSDGQNAATALSSTEPII- 209 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ ++AY +++ + V + T + NF+ AP +S +G++ + Sbjct: 210 SPVWSPDGGRLAYVSFEKKKP--VIYVHTLASGQRHIVANFKGSNSAPAWSPDGRKLAVV 267 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + KD IYSV+ + +R+T + I+ YS D I F SDR G Q+Y + ++G Sbjct: 268 LSKDGNSQIYSVNADGSGLQRITQSSGIDTEPRYSADGGTIYFTSDRGGSPQVYQVGASG 327 Query: 336 SDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 D KR++ E SY P +P G +AF +F + VM Q +++ + + ++ Sbjct: 328 GDAKRVT--FEGSYNVSPRPAPDGKSLAFISRREGRFQLAVMDLASRQVQVVSDSNKDES 385 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQW 442 P+++P+ R ++ + + G L ++ +GR + ++ A +P W Sbjct: 386 PSFAPNSRMILIATEIGGR--GVLSAVSSDGRIKQRLSVAAGDVREPAW 432 >gi|302038650|ref|YP_003798972.1| protein TolB [Candidatus Nitrospira defluvii] gi|300606714|emb|CBK43047.1| Protein TolB precursor [Candidatus Nitrospira defluvii] Length = 443 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/444 (24%), Positives = 216/444 (48%), Gaps = 22/444 (4%) Query: 11 LNMKINLCLLLV--LIGGFFPTSIHAFVKVATNSANYSPVSI-AFTKFVSIDELGGKVSE 67 + + I LC+++ L G + F++ P+ + F + LGG++ E Sbjct: 6 IGLMIALCVVVGAGLFGILDSRATDVFLEATRPDFQKIPIGVFGFQNGGGPEWLGGRIEE 65 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPR--FQDWNSLGAQVLVTGRVIKEGKDR-- 123 V+ DLQRS VF+L+ + K + + F+ G VLV G+ ++ + Sbjct: 66 VLKADLQRSLVFSLVDLPAIGVKAREVSTTDKAIFKQAAENGVSVLVWGKSGQKNGSKES 125 Query: 124 -LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L ++ ++D + + GK++ S + R +AH +D++ TGE G ++I++V+E Sbjct: 126 ELLMDGFVYDSGSDEVVGGKRYVGSTSVVRLMAHRFADELVFRYTGEPGIARTKIVYVAE 185 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATYDDEDILRVYL 241 + L VMD DG + +T D L PR+SP+++ + + Y + + + Sbjct: 186 HGNA----RELFVMDYDGYEPKQITA--DGFLNLMPRWSPDRRFIVFTAYRSRNTQDIDI 239 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 ++ + + + + + P S +G + +D +IY +D ++ +RLT Sbjct: 240 LELATGKRWTLV-SMAGLNITPALSPDGNFLAFASSQDGNSEIYKLDTRTKTPQRLTVNQ 298 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++S ++SP +I F SDR G Q+++M ++GS+ +R++ + + + P WSP+G+ I Sbjct: 299 GGDLSPTWSPTGREIAFTSDRGGAPQVFIMSADGSNVRRLTYEGDYNA-APAWSPRGNWI 357 Query: 362 AFTKFSGEK-FAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLY 419 A+ + ++ + I + DG + + + +P+WSP GR + FS DG S +Y Sbjct: 358 AYVCRTAQRLYKICTVSPDGQKRVQVTTGPGIDDSPSWSPDGRHITFSSTVDGK--SHIY 415 Query: 420 SIDLNGRN-ETLINTPAYASDPQW 442 +D +G+ E + + S P W Sbjct: 416 MVDTDGKGLERITFGGTHNSSPSW 439 Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +M DG+N+R LT D P +SP +AY + R+Y + T KR+ Sbjct: 327 IMSADGSNVRRLTYEGDYNA-APAWSPRGNWIAYVCRTAQ---RLYKICTVSPDGQKRVQ 382 Query: 255 NFRSMIL--APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +P +S +G+ S D IY VD ER+T N S S+SP Sbjct: 383 VTTGPGIDDSPSWSPDGRHITFSSTVDGKSHIYMVDTDGKGLERITFGGTHNSSPSWSP 441 >gi|237809442|ref|YP_002893882.1| translocation protein TolB [Tolumonas auensis DSM 9187] gi|237501703|gb|ACQ94296.1| Tol-Pal system beta propeller repeat protein TolB [Tolumonas auensis DSM 9187] Length = 431 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 122/443 (27%), Positives = 204/443 (46%), Gaps = 29/443 (6%) Query: 19 LLLVLIGG-FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 LL+ L+G +F S A + + S +A F S L ++ V+S DL RS Sbjct: 4 LLMALVGWLWFSQSAMAELDILVTGGMDSGRPVAIVPFKSDGSLPEDLANVISSDLMRSG 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F +S++S ++ I + W++LG + +V G V G + RV F L DV K Sbjct: 64 KFTPLSRNSMPEQPAQSGQI-NYPTWSALGTEAVVVGHVESAGAGQYRVTFELVDVARGK 122 Query: 138 ----QIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 ++ + + A RK AH ISD +Y+ +TGE+G F + IL+V+ S + Sbjct: 123 DGGNAVLDSRVATVTAKQLRKYAHRISDIVYEKLTGERGAFLTSILYVTVDR-SQAMPYR 181 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D DG N R L SR+ I+ P +SP+ +++AY +++ +++ D Sbjct: 182 LMLADYDGYNERMLLRSREPIM-SPTWSPDGRRIAYVSFEKRTPA-IFIQDL-------- 231 Query: 253 IGNFRSMILA-------PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 RSM++A P +S +G+ + + KD DIY+VD+ S RLT+ I+ Sbjct: 232 YSQARSMLVALPGINGAPSWSPDGRSMAVVLSKDGQPDIYTVDIGSRRLNRLTSDQAIDT 291 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S+S D + F S+R G+ Q+Y + R++ + + S +P G + Sbjct: 292 EPSWSADGRSVFFTSERGGRPQIYKVDVASHSASRVTWEGD-SNLGASATPDGKALVMVS 350 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + I +G +L S ++P+ +P+G +I+S G G L S D G Sbjct: 351 RVQGSYRIARQDLNGGGVYVLTSSSLDESPSVAPNGSMIIYSTVYQGRQGLALVSAD--G 408 Query: 426 R-NETLINTPAYASDPQWVGFMD 447 R L + P W F++ Sbjct: 409 RFKANLPSAKGEVRSPAWSPFLN 431 >gi|118574577|sp|Q478F2|TOLB_DECAR RecName: Full=Protein tolB; Flags: Precursor Length = 426 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 18/409 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ AN PV+I F V+ V DL+RS +F L+ + P Sbjct: 29 IEITGAGANRIPVTI--VDFPGDPTAARVVTATVRADLERSGLFKLVDNGTAAFDENAPV 86 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + +W GA L G + + R+ FRL+D + + G + ++ + R Sbjct: 87 N---HAEWKGKGADALAAGSIARSTDGRMEARFRLYDTQKGVSLGGAAYVTNNSQLRAAG 143 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+D IY+ +TGEKG F++RI +V V + L + D DG N S + I+ Sbjct: 144 HRIADFIYEKLTGEKGVFSTRIAYV----VKARGQFLLQIADSDGQNAATALSSTEPII- 198 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ ++AY +++ + V + T + NF+ AP +S +G++ + Sbjct: 199 SPVWSPDGGRLAYVSFEKKKP--VIYVHTLASGQRHIVANFKGSNSAPAWSPDGRKLAVV 256 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + KD IYSV+ + +R+T + I+ YS D I F SDR G Q+Y + ++G Sbjct: 257 LSKDGNSQIYSVNADGSGLQRITQSSGIDTEPRYSADGGTIYFTSDRGGSPQVYQVGASG 316 Query: 336 SDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 D KR++ E SY P +P G +AF +F + VM Q +++ + + ++ Sbjct: 317 GDAKRVT--FEGSYNVSPRPAPDGKSLAFISRREGRFQLAVMDLASRQVQVVSDSNKDES 374 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQW 442 P+++P+ R ++ + + G L ++ +GR + ++ A +P W Sbjct: 375 PSFAPNSRMILIATEIGGR--GVLSAVSSDGRIKQRLSVAAGDVREPAW 421 >gi|260556542|ref|ZP_05828760.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii ATCC 19606] gi|260409801|gb|EEX03101.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii ATCC 19606] Length = 426 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/361 (29%), Positives = 186/361 (51%), Gaps = 34/361 (9%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ N + DW + G +VTG+ IK+ D V Sbjct: 57 IVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTADGFEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQ-KQQYLLNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPAT 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 172 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + I +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 230 GTR-EVITSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 289 ARYTPDGKAFIFTSDRGGSPQIYRYDFGNGSVKRLT-------FKGSFNARGTLSA---- 337 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 338 DGKKIAL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNR 395 Query: 415 G 415 G Sbjct: 396 G 396 >gi|229592295|ref|YP_002874414.1| translocation protein TolB [Pseudomonas fluorescens SBW25] gi|259533872|sp|C3JYS2|TOLB_PSEFS RecName: Full=Protein tolB; Flags: Precursor gi|229364161|emb|CAY51810.1| TolB colicin import protein [Pseudomonas fluorescens SBW25] Length = 433 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/424 (26%), Positives = 209/424 (49%), Gaps = 28/424 (6%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQ 89 + V + S +P+++ + L ++++VS DL+ S + N+ISQ + Sbjct: 26 ILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIVSDDLRNSGYYAPIPKGNMISQPNQAS 85 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 ++ F+DW ++GAQ L+ G + G RL++++ L++V +Q++ + Sbjct: 86 EVV-------FRDWKAVGAQYLMVGNITPAG-GRLQIQYTLFNVATEQQVLTGSVSGTAE 137 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR---DGANIRYL 206 R +AH ISD ++ +TG KG F++R+L+V+ S + N+ + R DGA L Sbjct: 138 QLRDMAHYISDQSFEKLTGIKGAFSTRLLYVTAERFS--VDNTRYTLQRSDYDGARAVTL 195 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 SR+ IL PRF+P+ +++AY +++ R+++ R ++I NF + AP +S Sbjct: 196 LQSREPIL-SPRFAPDGKRIAYVSFEQRRP-RIFVQHIDTGRR-EQITNFEGLNGAPAWS 252 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G R + KD DIY +++ S R+T+ IN + D S I F SDR GK Sbjct: 253 PDGSRLAFVLSKDGNPDIYVMNMASRQISRVTSGPGINTEPFWGKDGSTIYFTSDRGGKP 312 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERL 385 Q+Y NG +R++ + + + + L+ + G F + ++ Sbjct: 313 QVYKANVNGGGAERVTFIGNYNANPKLSADEKTLVMIHRQDGFTNFRVAAQDLQRGTVKI 372 Query: 386 LVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWV 443 L D+NL ++ T +P+G +I++ ++ G L + +NGR + T +P W Sbjct: 373 LT-DTNLDESATVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWS 429 Query: 444 GFMD 447 +++ Sbjct: 430 PYLN 433 >gi|330975321|gb|EGH75387.1| translocation protein TolB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 399 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 109/404 (26%), Positives = 205/404 (50%), Gaps = 12/404 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 D S + F SDR GK Q+Y NG +R++ + + + + L+ + G Sbjct: 297 KDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNANPKLSADEKTLVMIHRQDGFT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDG 412 F + V ++L DSNL ++PT +P+G +I++ ++ G Sbjct: 357 NFKVAVQDLARGSVKILT-DSNLDESPTVAPNGTMVIYATRQPG 399 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%) Query: 329 YVMQSNGSDQKR---ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQER 384 Y +Q + D R + Q +E P ++P G IA+ F ++ I V D G +E+ Sbjct: 180 YTLQRSDYDGARAVTLLQSREP-ILSPRFAPDGKRIAYVSFEQKRPRIFVQHIDTGRREQ 238 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + AP WSP G L F KDG+ ++Y I+L R Sbjct: 239 ITNFEGLNGAPAWSPDGSKLAFVLSKDGN--PEIYVINLASR 278 >gi|319793386|ref|YP_004155026.1| toL-pal system beta propeller repeat protein tolb [Variovorax paradoxus EPS] gi|315595849|gb|ADU36915.1| Tol-Pal system beta propeller repeat protein TolB [Variovorax paradoxus EPS] Length = 408 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 195/411 (47%), Gaps = 16/411 (3%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + + IA F D K+S++V DL+RS F + D+ Q + + S Sbjct: 9 RVEVSGVGLTQLPIALVPFKGQDSSPQKISDIVQADLERSGQFRGV--DASGQAL-DEAS 65 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P W A LV G V + R V+FRLWDV + + G+ + R +H Sbjct: 66 RPDLSLWRQRTADSLVVGSVTRLADGRFDVKFRLWDVVKGQDLGGQSYTVPQGDLRLASH 125 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I+D +Y+ +TGEKG F++RI +V++ G + SL V D DG N + S + I+ Sbjct: 126 RIADFVYEKLTGEKGIFSTRIAYVTK----GGSRYSLWVADADGENAQAALASPEPII-S 180 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +S N Q++AY +++ + VY+ + + + + NF+ AP ++ +G +++ Sbjct: 181 PCWSSNGQQLAYVSFESRKPV-VYVHNVASGQR-RLLANFKGSNSAPAWAPDGNSLAVTL 238 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D +Y++ RLT + I+ YS D S I F SDR G Q+Y M ++G Sbjct: 239 SRDGGSQLYTIPASGGEPRRLTQSASIDTEPVYSADGSTIYFVSDRGGAPQIYKMGASGG 298 Query: 337 DQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + R++ +Y P S G +A+ G F + VM+ + + + ++P Sbjct: 299 NPTRVT--FSGTYNISPSVSGDGRWLAYISRIGGAFKLQVMELATGNVASITDTNADESP 356 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 +++P+ + ++++ G L + L+G+ L +P W F Sbjct: 357 SFAPNSKLIVYATHLQGR--EALMTTTLDGKIKARLAGQAGDIREPDWGPF 405 >gi|260219498|emb|CBA26343.1| Protein tolB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 408 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 182/395 (46%), Gaps = 16/395 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 A +V + + + +A F D+ K++ +V DL+RS F + S + Sbjct: 7 QAQFRVEVSGVGMTQIPVAIAAFRGEDQSPQKIAAIVQADLERSGQFKGVESGSGLDESA 66 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 PD GA LV G V + R V FRLWDV + + G+ P R Sbjct: 67 RPD----LNVMRQRGADALVAGSVTRLADGRFDVRFRLWDVVRNQDLGGQSHAVLPGDLR 122 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+D +Y+ +TG+KG F++RI +V++ +G N L V D DG N + S + Sbjct: 123 LAAHRIADFVYERLTGDKGVFSTRISYVTK---AGPTYN-LWVADADGENAQSALSSPEP 178 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P ++PN ++AY +++ + VY+ D R + + +F+ AP +S +G+ Sbjct: 179 II-SPSWAPNGNQLAYVSFEARKPV-VYVHDVATGRR-RLVASFKGSNSAPTWSPDGRSI 235 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +++ +D +Y +D RL + I+ Y+ D I F SDR G Q+Y + Sbjct: 236 ALTLSRDGGSQLYVMDANGGEPRRLMQSPAIDTEPVYTSDGKTIYFVSDRGGSPQIYRVP 295 Query: 333 SNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G +R++ Y P SP G +A+ F + VM + + + Sbjct: 296 AGGGSAERVT--FSGGYNISPALSPDGKWLAYVSRVNGAFKLHVMDIVSGSVSAITDKAA 353 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + P++SP+ R +I++ G L + L+GR Sbjct: 354 DENPSFSPNSRLIIYAILLQGK--EALMTTTLDGR 386 >gi|94501020|ref|ZP_01307544.1| Periplasmic component of the Tol biopolymer transport system [Oceanobacter sp. RED65] gi|94426767|gb|EAT11751.1| Periplasmic component of the Tol biopolymer transport system [Oceanobacter sp. RED65] Length = 426 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 118/443 (26%), Positives = 218/443 (49%), Gaps = 34/443 (7%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 L+ VL+ S A + + + S + I+ F + L +V DL+RS Sbjct: 4 LIFVLLSFLIHASAKAELTIEISQGIASAIPISVVPFQVPEGLTTLPEGIVRNDLERSGH 63 Query: 79 FNLISQDSFKQKITNPD--SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F +++ K +++P S F DW L + +V GRV G D+ +V+++L+DV + Sbjct: 64 FEVLAP---KDMLSHPHVQSDIYFTDWRLLKQEYVVVGRVTPLG-DKYQVQYQLFDVFNE 119 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +I+ + + R +AH ISD IY+ +TG +G F+++I +V+ + + SL + Sbjct: 120 TEILAQTLTGTAEQLRDVAHRISDAIYEQLTGIRGAFSTKIAYVTTNPQR--TQFSLAIA 177 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DGA + + S I F P +SP+ +K+AY +DE +VY+ D + + I Sbjct: 178 DSDGAREKVVLRSSYSI-FSPTWSPDGKKLAYVMMEDEGS-KVYIQDLATGQK-ELISAQ 234 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + + AP FS +G + +++ KD +IY+VDL++N R+T I+ ++ PD I Sbjct: 235 KGINSAPSFSPDGNKLALTLSKDGNSEIYTVDLRTNEWSRITRHYSIDTEPNWMPDGVHI 294 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SG 368 +F S R G Q+Y + +R++ FD ++ + L +F G Sbjct: 295 IFTSGRSGSPQIYRVNVETEYVERLT-------FDGHYNARARLAQDGRFLVLVHQAERG 347 Query: 369 EKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F I + ++L ED+ L ++P+ SP+G ++++ K + S L ++ ++G Sbjct: 348 GDFHIASLDLTRGLLQILTEDTYLDESPSVSPNGVMVMYAAKHNNR--SILAAVSVDGDV 405 Query: 428 ETLINTPAYASD---PQWVGFMD 447 + L+ P+ D P W +++ Sbjct: 406 KFLV--PSKTGDVREPAWGPYLN 426 >gi|288940690|ref|YP_003442930.1| Tol-Pal system beta propeller repeat-containing protein TolB [Allochromatium vinosum DSM 180] gi|288896062|gb|ADC61898.1| Tol-Pal system beta propeller repeat protein TolB [Allochromatium vinosum DSM 180] Length = 436 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/384 (27%), Positives = 192/384 (50%), Gaps = 19/384 (4%) Query: 65 VSEVVSKDLQRSDVFN-LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++ ++ DL R+ F + ++D T + F+DW+ LG LV GRV + Sbjct: 61 MAAIIGADLARTGRFKPMPTRDMLDMPATREEV--DFRDWSLLGMNNLVIGRV-EPDPTG 117 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 R+ F L+DV ++ S+ + R+ AH I+D+I++ +TG+ G +RI +++ + Sbjct: 118 YRISFSLFDVFRGTELASSSLVSTQSGMRQTAHRIADEIHEKLTGQPGVAATRIAYITST 177 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + +L V D DG N + + S + L P +SP+ Q++AY +++++ +Y+ + Sbjct: 178 GSGADLTVTLRVADADGYNPQTIVSSAEP-LMSPAWSPDGQRLAYVSFENKRAA-IYIQE 235 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + + + + +P FS +G R +++ KD DIYS++L S RLT+ I Sbjct: 236 LSSGRR-ELVASHPGINGSPAFSPDGSRLAMTLSKDGNPDIYSLNLLSRELTRLTDHYAI 294 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQG- 358 + S+SPD I+F SDR G Q+Y M + G +RIS + + ASY +P G Sbjct: 295 DTEPSWSPDGQSIIFTSDRGGSPQIYRMAATGGPAERISVEGDYNGRASY-----APDGR 349 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 ++ T+ +G F IG + RLL ++P+++P+G +I++ G G Sbjct: 350 SIVMVTRVNG-AFRIGQLDLARGVTRLLSRGDLDESPSFAPNGAMVIYA-TIHGHRGVLA 407 Query: 419 YSIDLNGRNETLINTPAYASDPQW 442 + G ++ L +P W Sbjct: 408 TASVEGGGSQRLTQDSGQVREPAW 431 >gi|118602525|ref|YP_903740.1| TolB domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166229990|sp|A1AWG2|TOLB_RUTMC RecName: Full=Protein tolB; Flags: Precursor gi|118567464|gb|ABL02269.1| TolB, N-terminal domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 424 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 116/432 (26%), Positives = 200/432 (46%), Gaps = 17/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL--GGKVSEVVSKDLQRSD 77 LLVLI + T ++V + + I + F I + G ++ V+ + RS Sbjct: 4 LLVLILSLYTTLAWTVLEVTILKQDENAFPIVISDFSVIGDANQGKIIAHVIRNNFNRSG 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F S S I N P F W + + +V G++ K K VE L DV +K Sbjct: 64 EF---SASSVNYVINNK---PNFDKWKAKKIEAIVLGKLEKISKKVFNVEIELLDVFSKK 117 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVM 196 + KF R+IAH +SD IY + GEKG F++R+ ++S + G + L + Sbjct: 118 ILYKDKFVVHNRGIRRIAHYLSDQIYHVLLGEKGSFDTRLAYISVTNKGKGEREYRLEIS 177 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D D N + + S+ IL P +SP+Q K+AY ++ + V++ + R +++ F Sbjct: 178 DSDAQNPQTILKSKKPIL-SPVWSPDQNKIAYVSFKNAR-SEVFIQYPFVRRKTQKLPYF 235 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP + NGK L+++ K+ DIYS L S RLT + I+ ASYS + +I Sbjct: 236 DGIASAPSWHPNGKNLLLTLSKNGNKDIYSYQLSSKKLTRLTTDVGIDTEASYSSEGDKI 295 Query: 317 VFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 VF S+R G+ Q+Y+ +++N ++ A V+SP +A G+ + I Sbjct: 296 VFTSNRSGQVQVYIKDLKTNKINRATFKGRYNAK---AVFSPDDKSLAMVHRVGKDYRIA 352 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 ++ ++ + ++P +SP+G +IF+ K G + L + L + Sbjct: 353 LLDIATKNLTIMTNNQLDESPFFSPNGSMIIFATNK-GSSSVLSVVSILGRQTFELASKA 411 Query: 435 AYASDPQWVGFM 446 +P W ++ Sbjct: 412 GEVREPNWSHYL 423 >gi|169632714|ref|YP_001706450.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii SDF] gi|169795058|ref|YP_001712851.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii AYE] gi|184159156|ref|YP_001847495.1| translocation protein TolB [Acinetobacter baumannii ACICU] gi|213158279|ref|YP_002320330.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB0057] gi|215482607|ref|YP_002324799.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB307-0294] gi|239501026|ref|ZP_04660336.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB900] gi|301346653|ref|ZP_07227394.1| translocation protein TolB [Acinetobacter baumannii AB056] gi|301596452|ref|ZP_07241460.1| translocation protein TolB [Acinetobacter baumannii AB059] gi|332869633|ref|ZP_08438844.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013113] gi|332875984|ref|ZP_08443770.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6014059] gi|169147985|emb|CAM85848.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii AYE] gi|169151506|emb|CAP00269.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii] gi|183210750|gb|ACC58148.1| Periplasmic component of the Tol biopolymer transport system [Acinetobacter baumannii ACICU] gi|213057439|gb|ACJ42341.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB0057] gi|213987558|gb|ACJ57857.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB307-0294] gi|322509069|gb|ADX04523.1| tolB [Acinetobacter baumannii 1656-2] gi|323519050|gb|ADX93431.1| translocation protein TolB [Acinetobacter baumannii TCDC-AB0715] gi|332732680|gb|EGJ63912.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013113] gi|332735850|gb|EGJ66891.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6014059] Length = 426 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ N + DW + G +VTG+ IK+ D V Sbjct: 57 IVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTADGFEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQ-KQQYLLNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPAT 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 172 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 230 GTR-EVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 289 ARYTPDGKAFIFTSDRGGSPQIYRYDFGNGSVKRLT-------FKGSFNARGTLSA---- 337 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 338 DGKKIAL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNR 395 Query: 415 G 415 G Sbjct: 396 G 396 >gi|193078076|gb|ABO13011.2| tolerance to colicins E2 E, A, and K [Acinetobacter baumannii ATCC 17978] Length = 426 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ N + DW + G +VTG+ IK+ D V Sbjct: 57 IVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTADGFEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQ-KQQYLLNELLNVPASRIRQAGHIVSDAIYQALTGIPGDFSGRIAYVLRNPAT 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 172 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 230 GTR-EVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 289 ARYTPDGKAFIFTSDRGGSPQIYRYDFGNGSVKRLT-------FKGSFNARGTLSA---- 337 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 338 DGKKIAL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNR 395 Query: 415 G 415 G Sbjct: 396 G 396 >gi|126642629|ref|YP_001085613.1| tolerance to colicins E2 E, A, and K [Acinetobacter baumannii ATCC 17978] Length = 381 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ N + DW + G +VTG+ IK+ D V Sbjct: 12 IVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTADGFEVH 67 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 68 YQLYDVQ-KQQYLLNELLNVPASRIRQAGHIVSDAIYQALTGIPGDFSGRIAYVLRNPAT 126 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 127 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 184 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 185 GTR-EVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTE 243 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 244 ARYTPDGKAFIFTSDRGGSPQIYRYDFGNGSVKRLT-------FKGSFNARGTLSA---- 292 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 293 DGKKIAL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNR 350 Query: 415 G 415 G Sbjct: 351 G 351 >gi|90580127|ref|ZP_01235935.1| translocation protein TolB precursor [Vibrio angustum S14] gi|90439012|gb|EAS64195.1| translocation protein TolB precursor [Vibrio angustum S14] Length = 442 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 111/446 (24%), Positives = 209/446 (46%), Gaps = 23/446 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCL L+ + F + + +SA P+ + ++ +L +S V++ DLQ Sbjct: 6 MGLCLALLSVSQFAHAELELVITDGVDSAR--PIGVVPFQWEGEGKLPTDISAVIASDLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS F+ + + Q N I + W+ +G +VTG ++K V ++L D+ Sbjct: 64 RSGKFSPVPESKLPQLPHNESQI-DYSAWSKMGVDAVVTGTIVKNQDGNYTVNYQLVDIV 122 Query: 135 DRKQIIGKKFFSS-------------PASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 K G + + P R+ AH ISD IYQ +TGE+G F +RI +V Sbjct: 123 KGKLAAGTEGAAKGDYLLLNNQASVKPNRMRQYAHRISDLIYQKLTGERGAFLTRIAYVD 182 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ S L V D DG N R + S+ Q L P +SP+ K+AY +++ ++++ Sbjct: 183 DNR-SSKFPYQLRVADYDGYNERVVLKSK-QPLMSPAWSPDGSKLAYVSFESGKA-QIFV 239 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +D + + + ++ +P+FS +G + + + K ++ IY DL++ ++T+ Sbjct: 240 LDIYTGKR-EVVADYPRHNGSPQFSPDGTKLAMVLSKTGSLQIYIKDLKTKQLRQITHGR 298 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N A ++PD + F SDR G+ Q+Y + D +R++ + A P +P G + Sbjct: 299 ANNTEAVWAPDGQSLYFTSDRGGRPQVYHLDLAIGDTQRVTW-QGAQNMGPQITPDGRYL 357 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 S + I ++L + ++P+ +P+G +I+S ++ T +L + Sbjct: 358 VVVNRSDSGYNIAKQDLKTGAMQILTKARLAESPSIAPNGSMIIYSSAQNNGT-YELSLV 416 Query: 422 DLNGRNET-LINTPAYASDPQWVGFM 446 ++GR + L +T P W F+ Sbjct: 417 SIDGRFQARLPSTSKRVRAPSWGPFL 442 >gi|152989051|ref|YP_001349885.1| translocation protein TolB [Pseudomonas aeruginosa PA7] gi|150964209|gb|ABR86234.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas aeruginosa PA7] Length = 432 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 112/414 (27%), Positives = 202/414 (48%), Gaps = 30/414 (7%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQKITNPDSIPRF 100 P+++ F + L +S ++ DL+ S F N+ISQ + ++ F Sbjct: 36 PIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVI-------F 88 Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISD 160 +DW ++G ++ G ++ G RL+V++ L+DV +Q++ S R ++H I+D Sbjct: 89 RDWKAVGVNYVMVGNIVPAGG-RLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIAD 147 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEP 217 ++ +TG KG F++++L+V+ S + N+ + R DGA L SR+ I+ P Sbjct: 148 QSFEKLTGIKGAFSTKMLYVTAERFS--VDNTRYTLQRSDYDGARPVTLLQSREPIV-SP 204 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 RFSP+ +++AY +++ + R+++ R ++I NF + AP FS +G R + Sbjct: 205 RFSPDGRRIAYVSFEQKRP-RIFIQYVDTGRR-EQITNFEGLNGAPAFSPDGNRLAFVLS 262 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D +IY +DL S + RLTN L I+ + D S + F SDR GK Q+Y M + Sbjct: 263 RDGNPEIYVMDLGSRSLRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVSSGA 322 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPT 396 R++ + + + + L+ + G F I R+L + +PT Sbjct: 323 VDRVTFIGNYNANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPT 382 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFMD 447 +P+G LI++ ++ D G L + +NGR I P D P W +++ Sbjct: 383 VAPNGTMLIYATRQQ-DRGV-LMLVSINGR--VRIPLPTAQGDVREPSWSPYLN 432 >gi|88861314|ref|ZP_01135945.1| outer membrane protein [Pseudoalteromonas tunicata D2] gi|88816693|gb|EAR26517.1| outer membrane protein [Pseudoalteromonas tunicata D2] Length = 451 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 115/436 (26%), Positives = 213/436 (48%), Gaps = 46/436 (10%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 LCLL+ F ++ F+ NSA P+ + K++ + + G +S+V++ DL+R Sbjct: 10 GLCLLIASSQLF--AALEIFITEGVNSAR--PIGVVPFKYIGVGQAPGDISDVIAADLRR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S FN I+ + QK + D + W G + +V G++ ++ R V + L DV Sbjct: 66 SGKFNPIATINMPQKPSK-DGEVDYGAWAQEGIEAIVVGQIEQQTGGRYLVSYELIDVL- 123 Query: 136 RKQIIG---------------------KKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 R Q+ G ++ + S+R+ H ISD +Y+++TGE+G F Sbjct: 124 RGQLTGGQTQMLSNGKLVNNQDHILDARQTVITDDSFRRYGHRISDVVYEALTGERGAFL 183 Query: 175 SRILFVSESVVSGIIKN------SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 +++ +V I+++ L V D DG N + L S++ L P +SP+ K+AY Sbjct: 184 TKVAYV-------IVRDDQAMPYQLVVADYDGYNEQVLLRSKEP-LMSPDWSPDGTKLAY 235 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG-KRALI-SVQKDEAMDIYS 286 T+++ ++Y+ D + +R+ + + AP+FS +G K AL+ S KD A +IY Sbjct: 236 VTFENRQS-QIYIQDIYTGKR-ERLTSHPGINGAPKFSPDGTKLALVLSKDKDGATEIYV 293 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +DL++ A R+T I+ S+ P+ +IVF S+R G Q+Y + +R++ D + Sbjct: 294 MDLKTRAERRVTRHRSIDTEPSWHPNGQEIVFTSERGGNAQIYSVNLATGKTRRLTFDGD 353 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + DLI + +G ++ + + ++L ++P+ +P+G +I+ Sbjct: 354 MNLAGSITPDGKDLIMVNRTAG-RYHLAKKELKTGDFQVLTATRLDESPSMAPNGSMIIY 412 Query: 407 SRKKDGDTGSKLYSID 422 S D L S+D Sbjct: 413 STLHDNKQVLALVSMD 428 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 3/129 (2%) Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 ++ D+ QL V +G +++ + + KE P WSP G +A+ F + I + Sbjct: 189 VIVRDDQAMPYQLVVADYDGYNEQVLLRSKE-PLMSPDWSPDGTKLAYVTFENRQSQIYI 247 Query: 376 MK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 G +ERL AP +SP G L KD D +++Y +DL R E + Sbjct: 248 QDIYTGKRERLTSHPGINGAPKFSPDGTKLALVLSKDKDGATEIYVMDLKTRAERRVTRH 307 Query: 435 -AYASDPQW 442 + ++P W Sbjct: 308 RSIDTEPSW 316 >gi|299769115|ref|YP_003731141.1| translocation protein TolB [Acinetobacter sp. DR1] gi|298699203|gb|ADI89768.1| translocation protein TolB [Acinetobacter sp. DR1] Length = 426 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/364 (28%), Positives = 187/364 (51%), Gaps = 34/364 (9%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S +V DL RS F S++ N + DW + G +VTG+ IK+ Sbjct: 54 LSPIVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTATGF 109 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V ++L+DV+ ++Q I + + PAS R+ H +SD IYQ++TG GDF+ RI +V + Sbjct: 110 EVHYQLYDVQ-KQQYILNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRN 168 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 169 PATAAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQD 226 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + +F+ + AP FS +G+ L + + +IY +DL + +R+TN I Sbjct: 227 LSTGTR-EVLTSFKGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSAI 285 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 286 DTEARYTPDGKSFIFTSDRGGSAQIYRYTFADGSVKRLT-------FKGSFNARGTLSA- 337 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKD 411 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++ Sbjct: 338 ---DGKKIAL-VHRPSGSSYKVAIQDINTGITNILTPTSLDESPSFSPNGQMVVYA-TRE 392 Query: 412 GDTG 415 G+ G Sbjct: 393 GNRG 396 >gi|262278152|ref|ZP_06055937.1| tolerance protein to colicins E2 [Acinetobacter calcoaceticus RUH2202] gi|262258503|gb|EEY77236.1| tolerance protein to colicins E2 [Acinetobacter calcoaceticus RUH2202] Length = 426 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 117/419 (27%), Positives = 205/419 (48%), Gaps = 37/419 (8%) Query: 11 LNMKINLCLLLVLIGGFFP-TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +N L L LI P S AF ++ A +P V + G +S +V Sbjct: 1 MNTSRKHLLSLALITALSPLASTTAFAQLYLEIAK-APDQAPKIAIVPFNNDNG-LSPIV 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F S++ N + DW + G +VTG+ IK+ V ++ Sbjct: 59 ETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTATGFEVHYQ 114 Query: 130 LWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV+ ++Q I + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 115 LYDVQ-KQQYILNELLNVPASRIRQAGHMVSDSIYQALTGIPGDFSGRIAYVLRNPATPA 173 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 174 ERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGT 231 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + +F+ + AP FS +G+ L + + +IY +DL + +R+TN I+ A Sbjct: 232 R-EVLTSFKGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSAIDTEAR 290 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 Y+PD +F SDR G Q+Y KR++ F ++ +G L A G Sbjct: 291 YTPDGKSFIFTSDRGGSAQIYRYTFADGSVKRLT-------FKGSFNARGTLSA----DG 339 Query: 369 EKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDTG 415 +K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ G Sbjct: 340 KKIAL-VHRPSGSSYKVAIQDINTGITNILTPTSLDESPSFSPNGQMVVYA-TREGNRG 396 >gi|330502225|ref|YP_004379094.1| translocation protein TolB [Pseudomonas mendocina NK-01] gi|328916511|gb|AEB57342.1| translocation protein TolB [Pseudomonas mendocina NK-01] Length = 432 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 109/440 (24%), Positives = 217/440 (49%), Gaps = 17/440 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 ++I L L++L+G S+ A + ++ + +P+++ + L +S+++ Sbjct: 5 IRIALLGLVMLVG-----SVQAADPLVISQGADRATPIAVVPFGWQGGSVLPEDMSQIIG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S F I + + T + ++DW +LGAQ ++ G ++ G RL+V++ L Sbjct: 60 NDLRNSGYFEPIPRQNMISLPTQASEV-IYRDWKALGAQYVLVGNIVPNG-GRLQVQYAL 117 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGII 189 ++V +Q++ R +AH I+D ++ +TG KG F++R+L+V+ E + + Sbjct: 118 FNVNTEQQVMTGNVGGGTDQLRDMAHHIADQSFEKLTGVKGAFSTRLLYVTAERMGANNT 177 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ IL P F+P+ +++AY +++ R+++ R Sbjct: 178 RYTLQRSDYDGARAVTLLQSREPIL-SPSFAPDGRRIAYVSFEQRRP-RIFVQHIDTGRR 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + +D +IY +D+ S R+TN I+ + Sbjct: 236 -EQITNFEGLNGAPAWSPDGNRLAFVLSRDGNPEIYVMDMGSRQMRRITNHYAIDTEPFW 294 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG- 368 D + F SDR G+ Q+Y N +R++ + + + + L+ + G Sbjct: 295 GKDGQTLYFTSDRAGRPQIYKTNINSGAVERVTFVGNYNANPKLSADEKTLVMIHRQDGF 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + + ++ R+L + S ++PT +P+G LI++ ++ G L S NGR Sbjct: 355 TVFKVAAQDLETNRLRILSDTSLDESPTVAPNGTMLIYATRQQGRGVLMLAST--NGRVR 412 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 LPLPTAQGEVREPSWSPYLN 432 >gi|146306309|ref|YP_001186774.1| translocation protein TolB [Pseudomonas mendocina ymp] gi|145574510|gb|ABP84042.1| TolB, N-terminal domain protein [Pseudomonas mendocina ymp] Length = 432 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 109/440 (24%), Positives = 217/440 (49%), Gaps = 17/440 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 ++I L L++L+G S+ A + ++ + +P+++ + L +S+++ Sbjct: 5 IRIALLGLVMLVG-----SVQAADPLVISHGADRATPIAVVPFGWQGGSVLPEDMSQIIG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S F I + + T + ++DW +LGAQ ++ G ++ G RL+V++ L Sbjct: 60 NDLRNSGYFEPIPRQNMISLPTQASEV-IYRDWKALGAQYVLVGNIVPNG-GRLQVQYAL 117 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGII 189 ++V +Q++ R +AH I+D ++ +TG KG F++R+L+V+ E + + Sbjct: 118 FNVNTEQQVMTGNVGGGTDQLRDMAHHIADQSFEKLTGVKGAFSTRLLYVTAERMGANNT 177 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ IL P F+P+ +++AY +++ R+++ R Sbjct: 178 RYTLQRSDYDGARAVTLLQSREPIL-SPSFAPDGRRIAYVSFEQRRP-RIFVQHIDTGRR 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + +D +IY +D+ S R+TN I+ + Sbjct: 236 -EQITNFEGLNGAPAWSPDGNRLAFVLSRDGNPEIYVMDMGSRQMRRITNHYAIDTEPFW 294 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG- 368 D + F SDR G+ Q+Y N +R++ + + + + L+ + G Sbjct: 295 GKDGQTLYFTSDRAGRPQIYKTNINSGAVERVTFVGNYNANPKLSADEKTLVMIHRQDGF 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + + ++ R+L + S ++PT +P+G LI++ ++ G L S NGR Sbjct: 355 TVFKVAAQDLETNRLRILSDTSLDESPTVAPNGTMLIYATRQQGRGVLMLAST--NGRVR 412 Query: 429 TLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 LPLPTAQGEVREPSWSPYLN 432 >gi|293609864|ref|ZP_06692166.1| hypothetical protein HMPREF0013_02014 [Acinetobacter sp. SH024] gi|292828316|gb|EFF86679.1| hypothetical protein HMPREF0013_02014 [Acinetobacter sp. SH024] gi|325123092|gb|ADY82615.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter calcoaceticus PHEA-2] Length = 426 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/421 (27%), Positives = 204/421 (48%), Gaps = 41/421 (9%) Query: 11 LNMKINLCLLLVLIGGFFP-TSIHAFVKV---ATNSANYSPVSIAFTKFVSIDELGGKVS 66 +N L L LI P S AF ++ + + +P IA F + + L Sbjct: 1 MNTSRKHLLSLALITALSPIASTTAFAQLYLEIAKAPDQAP-KIAIVPFTNDNGL----Y 55 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F S++ N + DW + G +VTG+ IK+ V Sbjct: 56 PIVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTATGFEV 111 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++ I+ + A R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 112 HYQLYDVQKQQYILNELLNVPAARIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPAT 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 172 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +FR + AP FS +G+ L + + +IY +DL + +R+TN I+ Sbjct: 230 GTR-EVLTSFRGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSAIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 289 ARYTPDGKSFIFTSDRGGSAQIYRYTFADGSVKRLT-------FKGSFNARGTLSA---- 337 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 338 DGKKIAL-VHRPSGSSYKVAIQDINTGITNILTPTSLDESPSFSPNGQMVVYA-TREGNR 395 Query: 415 G 415 G Sbjct: 396 G 396 >gi|317051744|ref|YP_004112860.1| TolB protein [Desulfurispirillum indicum S5] gi|316946828|gb|ADU66304.1| TolB protein [Desulfurispirillum indicum S5] Length = 452 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/405 (26%), Positives = 198/405 (48%), Gaps = 21/405 (5%) Query: 48 VSIAFTKFVSIDELGGKVSE----VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDW 103 + IA F S + L + E ++ +DL + + ++ ++++ + PD ++DW Sbjct: 54 IPIAIPTFTSDNSLSAEFRENMRALILEDLSYAGIIKVLPREAYLAEPGRPDV--NYEDW 111 Query: 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 +GA+ + + + G LR E ++D+ +++ + F + + +AH ++D I Sbjct: 112 LFIGAEFMASVSLFSTGT-HLRAEVAVYDMAMKRKKSKQSFEIAFDRYVTLAHRLADHIL 170 Query: 164 QSITGEKGDFNSRILFVSESVVSG-IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 ++G +G F +RI FVS+ S + ++ MD DG+N++ +T + D I P F + Sbjct: 171 YEVSGVQGFFEARIAFVSDRTSSANAVSKNIYAMDFDGSNLQPVT-TNDSININP-FWHS 228 Query: 223 QQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 KVA+ +Y +IL L R G I +P +GK ++ + Sbjct: 229 MSKVAFTSYIRQRPEILLRDLQSGRTALLAAFGGTNTGGIPSP----DGKYIAVTASHNG 284 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 +IY + +LT I++S ++SPD + I F SDR G Q+Y++ + R Sbjct: 285 ISNIYLLHSDGRMYRQLTRHWSIDVSPAWSPDGNFIAFVSDRPGSPQVYMINLRTDEITR 344 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSP 399 ++ + + PVWSP G+ IA+T KF I +++KDG + +RL + + P WS Sbjct: 345 VTYEGRYN-VSPVWSPDGNYIAYTSLEENKFNIYIVEKDGYNPQRLTYNSGHNETPRWSR 403 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWV 443 G L+F+ + G+ KLY +D G + L + PA + P WV Sbjct: 404 DGNYLLFTSNRTGEF--KLYVMDRTGTFQKRLKDGPANNNMPDWV 446 >gi|260551455|ref|ZP_05825639.1| tolerance to colicins E2 [Acinetobacter sp. RUH2624] gi|260405449|gb|EEW98942.1| tolerance to colicins E2 [Acinetobacter sp. RUH2624] Length = 426 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 185/361 (51%), Gaps = 34/361 (9%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ N + DW G +VTG+ IK+ D V Sbjct: 57 IVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQVAGIPYVVTGQ-IKQTADGFEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQ-KQQYLLNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPAT 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 172 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 230 GTR-EVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 289 ARYTPDGKAFIFTSDRGGSPQIYRYDFGDGSVKRLT-------FKGSFNARGTLSA---- 337 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 338 DGKKIAL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNR 395 Query: 415 G 415 G Sbjct: 396 G 396 >gi|50085692|ref|YP_047202.1| translocation protein TolB [Acinetobacter sp. ADP1] gi|67461952|sp|Q6F985|TOLB_ACIAD RecName: Full=Protein tolB; Flags: Precursor gi|49531668|emb|CAG69380.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter sp. ADP1] Length = 425 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 178/350 (50%), Gaps = 26/350 (7%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLR 125 +V DL RS F+ S++ + SI Q W + G +V G + + Sbjct: 55 IVENDLNRSGRFSSASKN-----LPTTASIDAIQASAWQAAGIPYVVVGNLKPAANNAFE 109 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 V ++L+DV+ ++Q + + + PAS R+ AH ISD IYQ++TG GDF+ RI +V + Sbjct: 110 VHYQLYDVQ-KQQYLLNEVLTVPASRVRQAAHMISDAIYQALTGIAGDFSGRIAYVLRNP 168 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 169 ATPDQRYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDL 226 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 227 ATGQR-EVLASFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQLQRMTNDNAID 285 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-- 362 A Y+PD +F SDR G Q+Y + S KR++ F ++ +G L A Sbjct: 286 TEARYAPDGKSFIFTSDRGGSPQIYRYSFDDSSTKRLT-------FRGAFNARGTLSADG 338 Query: 363 -----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + SG + + +M +L S ++P++SP+G+ ++++ Sbjct: 339 KNIALVHRPSGSNYKVAIMNISTGIVNILTPTSLDESPSFSPNGQMVVYA 388 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 326 EQLYVMQ---SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +Q Y +Q ++G K + ++ P W+P IA+ F ++ AI + Q Sbjct: 172 DQRYTLQIADTDGEQPKTVLSSRD-PILSPAWTPDAKKIAYVSFETKRPAIYLQDLATGQ 230 Query: 383 ERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR------NETLINTPA 435 +L L AP++SP G+S++F+ +G+ ++Y +DL+ R N+ I+T A Sbjct: 231 REVLASFKGLNGAPSFSPDGKSMLFTASMNGN--PEIYQMDLSTRQLQRMTNDNAIDTEA 288 Query: 436 -YASD 439 YA D Sbjct: 289 RYAPD 293 >gi|51246264|ref|YP_066148.1| TolB protein [precursor] [Desulfotalea psychrophila LSv54] gi|67461948|sp|Q6AKI4|TOLB_DESPS RecName: Full=Protein tolB; Flags: Precursor gi|50877301|emb|CAG37141.1| related to TolB protein [Precursor] [Desulfotalea psychrophila LSv54] Length = 438 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/405 (26%), Positives = 198/405 (48%), Gaps = 27/405 (6%) Query: 48 VSIAFTKFVSIDELGGK------VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 + +A F + E G K +++ V+K L+ + ++I +K + T Sbjct: 51 IKVAVPWFTNTGEGGMKARIAKDIADTVAKALKFHGIISIIPTSEYKGRQT--------A 102 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 DW LGA V G K ++++E RL DV + I+GK + S + + D Sbjct: 103 DWAKLGADYAVLGSY-KMFPKKIKLEIRLLDVAENNIILGKSYKGSMSQQNPMIFKFCDA 161 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +S+TG +G +SRI FVS + + + D G IR +T + ++ PRF+ Sbjct: 162 AIKSLTGTEGIASSRIAFVSYEKRT----KDVFMTDILGRRIRQVT-RHNNLVVSPRFTR 216 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + ++Y++Y ++Y+ D R + K + + M LAP ++ +GK ++++ K A Sbjct: 217 DGNFLSYSSYHSGS-QKLYITDLRQAKITKSLSRRKGMNLAPTWAPDGKSCILTLSKYGA 275 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 D++ ++ Q E+LT+ +N+S +YS D IVF SDR G+ QLY+M+ KR+ Sbjct: 276 PDLFRINQQGKILEQLTSRAGVNVSPTYSADGRHIVFVSDRSGRPQLYLMELETKQTKRL 335 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLVED-SNLQAPTWSP 399 + D + +P WSP + IA++ + I + + + L D + ++P WSP Sbjct: 336 TYDGREN-AEPNWSPVENKIAYSSLRDGLYQIFTLDPFSAAPPKQLTSDLTRHESPVWSP 394 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWV 443 G ++F+ + DG ++Y+I NG + + + P S +W Sbjct: 395 DGNQILFT-QYDGRR-QQIYAIMKNGSYQRRVFSFPGSQSSARWA 437 >gi|254429692|ref|ZP_05043399.1| Tol-Pal system beta propeller repeat protein TolB [Alcanivorax sp. DG881] gi|196195861|gb|EDX90820.1| Tol-Pal system beta propeller repeat protein TolB [Alcanivorax sp. DG881] Length = 434 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/434 (23%), Positives = 203/434 (46%), Gaps = 8/434 (1%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 K+ + + L+ + + A + + V IA F VS++V DL Sbjct: 8 KVWTQISIALMAALWMVNAQAELLIKVTEGRVDAVPIAVVPFDGAQNAPEDVSQIVQADL 67 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + + + N + ++D+ LG + ++TG + + V + L+DV Sbjct: 68 HRSGQFKPLPPEDMLSRPRNEQEM-IYRDFKVLGTEYVITGSMKAQETGGYEVSYALFDV 126 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +K+++ + + + R +AH ISD IY+ +TG G F+++IL+V+ + L Sbjct: 127 ARQKKLMSETYRPPESQLRDVAHAISDRIYEQLTGIPGAFSTKILYVTHNRHDA-NPYQL 185 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 D DG + + S++ I+ P +SP+ +K+AY +++D+ +Y+ +++ Sbjct: 186 QYADADGHRVTTILRSKEPIM-SPTWSPDGRKIAYVSFEDQGRPAIYIHSLATTER-EKV 243 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +F + AP +S +G++ +++ +D +IY ++L + RLTN I+ + PD Sbjct: 244 SSFSGINGAPDWSPDGQKLALTLSRDGNPEIYMLNLSTKGLTRLTNNYGIDTEPRWLPDG 303 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +VF S R G Q+Y + N +R+S + V +P G + + F + Sbjct: 304 EHLVFTSSRSGGPQIYKLNINDKSVRRVSFQGAYNARSDV-TPDGRYLVYVHRRNGNFNV 362 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LIN 432 GV ++ ++P+ +P+G +I+ + G TG L ++ ++GR + L + Sbjct: 363 GVQDLQRGTFNIVTRTDMDESPSVAPNGSMVIYG-TQHGGTGV-LEAVSIDGRVKVELPS 420 Query: 433 TPAYASDPQWVGFM 446 +P W F+ Sbjct: 421 KEGEVREPAWSPFL 434 >gi|312962753|ref|ZP_07777241.1| TolB [Pseudomonas fluorescens WH6] gi|311282970|gb|EFQ61563.1| TolB [Pseudomonas fluorescens WH6] Length = 426 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/424 (25%), Positives = 208/424 (49%), Gaps = 28/424 (6%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQ 89 + V + S +P+++ + L ++++VS DL+ S + N+ISQ + Sbjct: 19 ILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIVSDDLRNSGYYAPIPKGNMISQPNQAS 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 ++ F+DW ++GAQ L+ G + G RL++ + L++V +Q++ + Sbjct: 79 EVV-------FRDWKAVGAQYLMVGNITPAG-GRLQITYTLFNVATEQQVLTGSVSGTAE 130 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR---DGANIRYL 206 R +AH ISD ++ +TG KG F++R+L+V+ S + N+ + R DGA L Sbjct: 131 QLRDMAHYISDQSFEKLTGIKGAFSTRLLYVTAERFS--VDNTRYTLQRSDYDGARAVTL 188 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 SR+ IL PRF+P+ +++AY +++ + R+++ R ++I NF + AP +S Sbjct: 189 LQSREPIL-SPRFAPDGKRIAYVSFEQKR-PRIFVQHIDTGRR-EQITNFEGLNGAPAWS 245 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G R + KD DIY +++ S R+T+ IN + D S I F SDR GK Sbjct: 246 PDGSRLAFVLSKDGNPDIYVMNMASRQITRVTSGPGINTEPFWGKDGSTIYFTSDRGGKP 305 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERL 385 Q+Y G +R++ + + + + L+ + G F + ++ Sbjct: 306 QIYKTSVGGGGAERVTFIGNYNANPKLSADEKTLVMIHRQDGFTNFRVAAQDLQRGTVKI 365 Query: 386 LVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWV 443 L D+NL ++ T +P+G +I++ ++ G L + +NGR + T +P W Sbjct: 366 LT-DTNLDESATVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWS 422 Query: 444 GFMD 447 +++ Sbjct: 423 PYLN 426 >gi|310823648|ref|YP_003956006.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|309396720|gb|ADO74179.1| Protein TolB [Stigmatella aurantiaca DW4/3-1] Length = 424 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 123/404 (30%), Positives = 205/404 (50%), Gaps = 33/404 (8%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGGKVS----EVVSKDLQRSDVFNLISQDSF----KQ 89 + + AN+ P+ +A+ + +D+ G K S E DL+ S +F ++ + SF K+ Sbjct: 22 IQISGANFRPLPLAYPAPLPVDDGGKKSSADFDEPFLFDLRASGLFQVLDRASFTADAKE 81 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 IT SI F W+ +GA+ LV ++ EG LR E RL++V ++ + Sbjct: 82 GITA-GSI-NFTRWSDVGAESLVKVQLGAEGGT-LRGELRLFNVGSGREDFKASHAVPTS 138 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R++AH ++D +Y+ +T E F SRI+FV ++ + + D DG N R LT Sbjct: 139 EPRQLAHFLADALYRHLTREPSPFLSRIVFVRKARDN----RDVWTADWDGNNARALTTG 194 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 +L P P+ VA+ +Y +YL + P I M FS +G Sbjct: 195 GINLL--PALGPD-GTVAFTSY-RRGQPDLYLQKEGGEARP--IVQNGQMATGVAFSPDG 248 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDREGKEQL 328 KR + + E+ IY ++ + +R+T+T + IN S S+SPD ++ F S+R G Q+ Sbjct: 249 KRIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLAFVSNRGGSPQI 308 Query: 329 YVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT----KFSGEKFAIGVMKKDGSQE 383 YVM +G++ +R++ + +Y P WSP+GDLIAFT + + + F + V G Sbjct: 309 YVMNVDGTNARRLT--FQGNYNQTPDWSPRGDLIAFTARDERNAFDLFTVNV--DTGKIT 364 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 RL + SN + P +SP+GR ++FS + G +L+ + G N Sbjct: 365 RLTQDQSNNEEPVFSPNGRLILFSSTRTGT--PQLFVMTAEGNN 406 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + V + DG++ + +T + I P +SP+ +++A+ + + ++Y+M+ A +R Sbjct: 263 IYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLAFVS-NRGGSPQIYVMNVDGTNA-RR 320 Query: 253 I---GNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + GN+ P +S G A + + A D+++V++ + RLT N Sbjct: 321 LTFQGNYNQT---PDWSPRGDLIAFTARDERNAFDLFTVNVDTGKITRLTQDQSNNEEPV 377 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +SP+ I+F S R G QL+VM + G++ + K P W+P Sbjct: 378 FSPNGRLILFSSTRTGTPQLFVMTAEGNNPLALPMGKGGG-LTPDWAP 424 >gi|330721823|gb|EGG99797.1| tolB protein precursor2C [gamma proteobacterium IMCC2047] Length = 432 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 106/415 (25%), Positives = 200/415 (48%), Gaps = 11/415 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVSKD 72 + +L+++ G + +F T + +P A F L ++++VS D Sbjct: 6 LRFTFVLLMVAGLLRPAWASFEIEITQGVD-NPTRFAAVPFGWQGAGLLPEDIAQIVSAD 64 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F + Q + T D + ++DW L + L+ G+V RV + L+D Sbjct: 65 LSRSGQFVALDQRNMMSLPTRADQV-YYRDWRILNQEFLLIGQVTPHANGGYRVHYELYD 123 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKN 191 V +++++ + P R AH ISD IY+ +TG KG F++RI +V+ + +G + Sbjct: 124 VYKQQRMVEGNIKAGPNELRDAAHLISDRIYERLTGIKGAFSTRIAYVTVDRPANGAERV 183 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D DG + + SR+ I+ P +SP+ K+AY +++ VY+ D + + Sbjct: 184 RLLVADADGYREKIIRESREPIM-SPHWSPDGNKLAYVSFEGRRPA-VYIQDVSTGKR-Q 240 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 ++ FR + AP +S +G++ +++ KD +IY D+ + +R+T I+ S+S Sbjct: 241 KVPAFRGINSAPAWSPDGRKLAMTLSKDGNPEIYIYDIATGKFQRVTRHFGIDTEPSWSA 300 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D ++F S R GK Q+Y + +R++ + + + + S G + F Sbjct: 301 DGKSLIFTSSRGGKPQIYRKEIQTGRLERLTFEGDYNARGRL-SADGRYLVMVHRQAGVF 359 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I V + R+L + ++P+ +P+G +I++ D + G L + L+GR Sbjct: 360 HIAVQDLKRDRLRVLTQTQLDESPSIAPNGSMIIYA-TNDNNKGI-LAFVSLDGR 412 >gi|70732083|ref|YP_261839.1| translocation protein TolB [Pseudomonas fluorescens Pf-5] gi|119371050|sp|Q4K7E4|TOLB_PSEF5 RecName: Full=Protein tolB; Flags: Precursor gi|68346382|gb|AAY93988.1| tolB protein [Pseudomonas fluorescens Pf-5] Length = 433 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/418 (25%), Positives = 207/418 (49%), Gaps = 16/418 (3%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ + L +++++ DL+ S + I + + T Sbjct: 26 ILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIIGDDLRNSGYYAPIPKQNMISLPTQAS 85 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q++ S R ++ Sbjct: 86 EV-IFRDWKALGAQYVMVGSIVPAG-GRLQVQYALFNVATEQQVLTGSVSGSVDQLRDMS 143 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQ 212 H ISD ++ +TG KG F++R+L+V+ S + N+ + R DGA L SR+ Sbjct: 144 HYISDQSFEKLTGIKGAFSTRLLYVTAERFS--VNNTRYTLQRSDYDGARAVTLLQSREP 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 IL PRF+P+ +++AY +++ + R+++ R ++I NF + AP +S +G R Sbjct: 202 IL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR-EQITNFEGLNGAPAWSPDGTRL 258 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + KD DIY +++ S R+T+ IN + D S I F SDR GK Q+Y Sbjct: 259 AFVLSKDGNPDIYVMNMASRQISRVTSGPGINTEPFWGKDGSTIYFTSDRGGKPQVYKSN 318 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSN 391 NG +R++ + + + + L+ + G F + ++L D+N Sbjct: 319 INGGGAERVTFIGNYNANPKLSADEKTLVMIHRQDGFTNFRVAAQDLQRGSVKILT-DTN 377 Query: 392 L-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 L ++ T +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 378 LDESATVAPNGTMVIYATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 433 >gi|330445541|ref|ZP_08309193.1| tol-Pal system beta propeller repeat protein TolB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489732|dbj|GAA03690.1| tol-Pal system beta propeller repeat protein TolB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 442 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 109/446 (24%), Positives = 207/446 (46%), Gaps = 23/446 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCL L+ + F ++ + +SA P+ + ++ +L +S V++ DLQ Sbjct: 6 MGLCLALLSVSQFANAALELVITDGVDSAR--PIGVVPFQWEGEGKLPTDISAVIASDLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS F+ + + Q N I + W+ +G +VTG + K V ++L D+ Sbjct: 64 RSGKFSPVPTNKLPQLPHNESQI-DYSAWSKMGVDAVVTGTIAKNPDGTYTVNYQLVDIV 122 Query: 135 DRKQIIGKKFFSS-------------PASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 K G + + P R+ AH ISD IYQ +TGE+G F +RI +V Sbjct: 123 KGKLAAGTEGAAKGDYLLLNNQASVKPNRMRQYAHRISDLIYQKLTGERGAFLTRIAYVD 182 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + L V D DG N R + S+ Q L P +SP+ K+AY +++ ++++ Sbjct: 183 NNQ-GAKFPYQLLVADYDGYNERVVLKSK-QPLMSPAWSPDGSKLAYVSFESGKA-QIFV 239 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +D + + + ++ +P+FS +G + + + K ++ +Y DL++ ++T+ Sbjct: 240 LDIYTGKR-EVVADYPRHNGSPQFSPDGSKLAMVLSKTGSLQVYIKDLRTKQLRQITHGR 298 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N A ++PD I F SDR G+ Q+Y M D +R++ + + P +P G + Sbjct: 299 ANNTEAVWAPDGQSIYFTSDRGGRPQVYHMDLATGDTQRVTW-QGSQNMGPQVTPDGRYL 357 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 S + I ++L + ++P+ +P+G +I+S ++ T +L + Sbjct: 358 VVVNRSDSGYNIAKQDLKTGAMQILTKARLAESPSIAPNGSMIIYSSAQNNGT-YELSLV 416 Query: 422 DLNGRNET-LINTPAYASDPQWVGFM 446 ++GR + L ++ P W F+ Sbjct: 417 SIDGRFQARLPSSSKRVRAPSWGPFL 442 >gi|332851094|ref|ZP_08433203.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013150] gi|332730258|gb|EGJ61583.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013150] Length = 426 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 185/361 (51%), Gaps = 34/361 (9%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ N + DW + G +VTG+ IK+ D V Sbjct: 57 IVETDLNRSGRFTSSSKNLPANAAINQI---QASDWQAAGIPYVVTGQ-IKQTADGFEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQ-KQQYLLNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPAT 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D Sbjct: 172 PAERYTLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLST 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 230 GTR-EVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+PD +F SD G Q+Y KR++ F ++ +G L A Sbjct: 289 ARYTPDGKAFIFTSDSGGSPQIYRYDFGNGSVKRLT-------FKGSFNARGTLSA---- 337 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDT 414 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ Sbjct: 338 DGKKIAL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNR 395 Query: 415 G 415 G Sbjct: 396 G 396 >gi|331007792|ref|ZP_08330906.1| tolB protein precursor [gamma proteobacterium IMCC1989] gi|330418401|gb|EGG92953.1| tolB protein precursor [gamma proteobacterium IMCC1989] Length = 430 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 109/420 (25%), Positives = 212/420 (50%), Gaps = 23/420 (5%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 ++++ N + + + + + L VS +++ DL+RS F+ I + + P+ Sbjct: 24 IRISKGVDNPTVIGVVPFNYTGSNALSEDVSTIIANDLRRSGQFSPIDSSNMLSFPSLPE 83 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRL--RVEFRLWDVKDRKQIIGKKFFSSPA---- 149 ++ ++DW LG++ LV G + G + L ++ F L+DV +K II F+ P Sbjct: 84 NV-VYRDWRLLGSEYLVIGEISPNGPNGLGYQLVFSLFDVVSQKTII----FNEPIVVGA 138 Query: 150 -SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R +AH +SD +Y++ITG +G F++ I++V + S + L D DGA + L Sbjct: 139 DGLRDMAHYVSDVVYEAITGIRGAFSTDIIYVEQRSNS---QYQLIRADMDGARPQILVK 195 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S IL P +SP+ +KVAY +++ +++ D + + +++ N+ + AP +S + Sbjct: 196 SSQPIL-SPSWSPDGRKVAYVSFETGR-PAIFIQDLQTAQR-EQVTNYTGLNGAPAWSPD 252 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK+ + + KD +IY +DL + A R+T I+ +++ D + I+F S+R GK Q+ Sbjct: 253 GKKLALVLSKDGNPEIYILDLATRALTRITKHFSIDTEPTWTADGAGIIFTSNRGGKPQI 312 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y+ + +R++ + + + + +P G I F I + ++L Sbjct: 313 YLASATEGYPQRLTFEGDYNARAQL-TPDGKNIVMVHRREGVFHIATQNLETGTVKVLTT 371 Query: 389 DSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQWVGFM 446 +++L ++PT +P+G +LI++ K G L S+ L+ G +T +P W F Sbjct: 372 ETSLDESPTIAPNGATLIYATKAGGK--GILASVSLDAGTRFAFPSTSGDVREPAWSPFF 429 >gi|110833619|ref|YP_692478.1| tolB protein [Alcanivorax borkumensis SK2] gi|110646730|emb|CAL16206.1| tolB protein [Alcanivorax borkumensis SK2] Length = 440 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 103/435 (23%), Positives = 202/435 (46%), Gaps = 10/435 (2%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 KI + + + L+ + S A + + V IA F VS +V DL Sbjct: 14 KIWMQISVALVTSLWMISAQAELLIKVTEGRVDAVPIAVVPFDGAKNAEEDVSAIVQADL 73 Query: 74 QRSDVFN-LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 RS F L QD + + I ++D+ LG + ++TG + ++ V + L+D Sbjct: 74 HRSGQFKPLPPQDMLSRPRNEQEMI--YRDFKVLGTEYVITGSMKRQETGGYEVGYALFD 131 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V +K+++ + + + R +AH ISD IY+ +TG G F+++IL+V+ + Sbjct: 132 VARQKKLMSETYRPPASQLRDVAHAISDRIYEQLTGIPGAFSTKILYVTHNRHDA-NPYQ 190 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L D DG + + S + I+ P +SP+ +K+AY +++D+ +Y+ + ++ Sbjct: 191 LQYADADGHRVTTILRSNEPIM-SPTWSPDGRKIAYVSFEDQGRPGIYIHNLATTER-EK 248 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +F + AP +S +G+ +++ +D +IY ++L + RLTN I+ + PD Sbjct: 249 VSSFSGINGAPDWSPDGQHLALTLSRDGNPEIYMLNLSTKVLTRLTNNYGIDTEPRWLPD 308 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +VF S R G Q+Y + N +R+S + V +P G + + + Sbjct: 309 GEHLVFTSSRSGGPQIYKLNINDKSVRRVSFQGGYNARSDV-TPDGRYLVYVHRRNGNYN 367 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LI 431 +GV ++ ++P+ +P+G +I+ + G L ++ ++GR + L Sbjct: 368 VGVQDLQRGTFNIVTRTDMDESPSVAPNGSMVIYGTQHGG--AGVLEAVSIDGRVKVELP 425 Query: 432 NTPAYASDPQWVGFM 446 + +P W F+ Sbjct: 426 SKEGEVREPAWSPFL 440 >gi|157374996|ref|YP_001473596.1| TolB domain-containing protein [Shewanella sediminis HAW-EB3] gi|189035990|sp|A8FUE5|TOLB_SHESH RecName: Full=Protein tolB; Flags: Precursor gi|157317370|gb|ABV36468.1| TolB, N-terminal domain protein [Shewanella sediminis HAW-EB3] Length = 442 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 111/405 (27%), Positives = 203/405 (50%), Gaps = 37/405 (9%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGK 121 ++S+VV DL RS F + + S Q+ N +I +FQ DW ++GA+ +V G + G+ Sbjct: 53 QISDVVMSDLTRSGTFKTLDELSLPQR--NISAISQFQAKDWANVGAEAVVMGAIKPYGE 110 Query: 122 DRLRVEFRLWD-VKDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITG 168 D+ V F L D VK + Q I ++ S A +R+ H ISD IY+ +TG Sbjct: 111 DKYLVSFDLVDLVKAQMQSGTGPQSKQEFLIDSRETVISSAQFRQYGHRISDIIYEKLTG 170 Query: 169 EKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 +G F +RI +V ++K+ L + D DG N + L S + L P +SP+ Sbjct: 171 IRGAFLTRIAYV-------VVKHGEKSPYQLMISDYDGHNEQMLLRSPEP-LMSPSWSPD 222 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +++AY +++++ +++ D ++ +I +F + AP FS +GK+ +++ KD Sbjct: 223 GRQLAYVSFENKKA-EIFIQDI-YTQSRSKITSFAGINGAPVFSPDGKKLALTLSKDGQP 280 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY VD+ + A +R+TN I+ AS+ PD ++F S+R G+ Q+Y + +R++ Sbjct: 281 EIYVVDISTKALKRVTNHYAIDTEASWFPDGKSLIFTSERGGRPQIYKVTLASGKVQRMT 340 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + E + + P G + F + K+ I M + ++L ++P+ +P+G Sbjct: 341 FEGEWNLGGSIL-PDGRSMIFVNRTNGKYNIARMDLETRFMQVLTSTRLDESPSVAPNGT 399 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVGFM 446 +I+ G L ++ +GR + + T P W F+ Sbjct: 400 MVIYGTTYQGK--QVLAAVSTDGRFKARLPTGQGEVKSPSWSPFL 442 >gi|119371033|sp|Q0VRJ2|TOLB_ALCBS RecName: Full=Protein tolB; Flags: Precursor Length = 434 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 103/435 (23%), Positives = 202/435 (46%), Gaps = 10/435 (2%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 KI + + + L+ + S A + + V IA F VS +V DL Sbjct: 8 KIWMQISVALVTSLWMISAQAELLIKVTEGRVDAVPIAVVPFDGAKNAEEDVSAIVQADL 67 Query: 74 QRSDVFN-LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 RS F L QD + + I ++D+ LG + ++TG + ++ V + L+D Sbjct: 68 HRSGQFKPLPPQDMLSRPRNEQEMI--YRDFKVLGTEYVITGSMKRQETGGYEVGYALFD 125 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V +K+++ + + + R +AH ISD IY+ +TG G F+++IL+V+ + Sbjct: 126 VARQKKLMSETYRPPASQLRDVAHAISDRIYEQLTGIPGAFSTKILYVTHNRHDA-NPYQ 184 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L D DG + + S + I+ P +SP+ +K+AY +++D+ +Y+ + ++ Sbjct: 185 LQYADADGHRVTTILRSNEPIM-SPTWSPDGRKIAYVSFEDQGRPGIYIHNLATTER-EK 242 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +F + AP +S +G+ +++ +D +IY ++L + RLTN I+ + PD Sbjct: 243 VSSFSGINGAPDWSPDGQHLALTLSRDGNPEIYMLNLSTKVLTRLTNNYGIDTEPRWLPD 302 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +VF S R G Q+Y + N +R+S + V +P G + + + Sbjct: 303 GEHLVFTSSRSGGPQIYKLNINDKSVRRVSFQGGYNARSDV-TPDGRYLVYVHRRNGNYN 361 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LI 431 +GV ++ ++P+ +P+G +I+ + G L ++ ++GR + L Sbjct: 362 VGVQDLQRGTFNIVTRTDMDESPSVAPNGSMVIYGTQHGG--AGVLEAVSIDGRVKVELP 419 Query: 432 NTPAYASDPQWVGFM 446 + +P W F+ Sbjct: 420 SKEGEVREPAWSPFL 434 >gi|187927780|ref|YP_001898267.1| translocation protein TolB [Ralstonia pickettii 12J] gi|187724670|gb|ACD25835.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia pickettii 12J] Length = 434 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 114/417 (27%), Positives = 191/417 (45%), Gaps = 16/417 (3%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S IA F + +S +V DL RS F+ + + Sbjct: 30 HAQLNVEISGVGASQYPIAIANFQGEAQAPQNLSAIVRADLVRSGRFSNVD---VAGAVV 86 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P W + GA V G V + G DR + FRL+D + + G P R Sbjct: 87 PESPAPDLGAWKAKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESLGGLSLTRGPGQLR 145 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+D IYQ + GE+G F +R+ +VS+ + L + D DGAN + S + Sbjct: 146 LAAHEIADYIYQKLIGERGVFATRLSYVSKVGR----RFQLQISDSDGANPQIALTSNEP 201 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ KVAY +++ + + VY+ D R I N + AP +S +G+ Sbjct: 202 II-SPAWSPDGTKVAYVSFESKKPV-VYVHDLVAGRR-TVISNQKGNNSAPAWSPDGRHV 258 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S+ +D +Y V+ + RL+ + I+ S+SPD I F SDR G Q+Y M Sbjct: 259 AVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMS 318 Query: 333 SNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 +G + + ++ P SP G L+A+ G F + L + S Sbjct: 319 VDGEEAGGAQRVTFKGNYNTSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTS 378 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 N ++P+++ +G+ ++++ + G S L ++ +GR +++ A +P W FM Sbjct: 379 NDESPSFAANGKFILYATRVGGK--SVLAAVSTDGRTRQVLSLQAGEVREPAWGPFM 433 >gi|291612990|ref|YP_003523147.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans lithotrophicus ES-1] gi|291583102|gb|ADE10760.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans lithotrophicus ES-1] Length = 419 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 111/419 (26%), Positives = 194/419 (46%), Gaps = 17/419 (4%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQRSDVFNLISQDSFK 88 S A + + A V I+ F + GG+ +S VVS DL R+ +F L+ D Sbjct: 14 CSARAELSIEITGAGEHQVPISLVPFAGDENQGGQSISTVVSNDLLRTGLFKLV--DPAG 71 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + P + + +W G L+ G+V RL V FRL D+ R ++IG + Sbjct: 72 KAPHEPGEV-NYVEWP--GVDALLIGKVRNLDGGRLEVRFRLLDMVRRTELIGLAVTAKS 128 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R IAH +SD IY+ +TG+ G F++RI +V+ K L V D DG + L Sbjct: 129 EQLRAIAHRVSDLIYEKLTGDPGVFSTRIAYVNRDGK----KYRLVVADSDGYGEQTLLA 184 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + I+ P +SP+ ++AY +++ + + R + +F AP +S + Sbjct: 185 LNEPIM-SPAWSPDGSQLAYVSFERGHA--SVFVQSLATRKRTVLADFPGSNSAPAWSPD 241 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK+ + + +D +Y V R+T + I+ ++PD ++F SDR G Q+ Sbjct: 242 GKQLALVLSRDGYSQLYLVRNDGKDLHRITFSETIDTEPVFTPDGKSLLFTSDRGGSAQI 301 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + G +R++ D + F P SP G F+ F F I V + +Q ++L Sbjct: 302 YRVPVEGGSAERLTFDG-TNNFSPRPSPDGKSFVFSHFVDGVFYIAVQDFETNQMQVLTG 360 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + P+++P+G+ ++F+ + G L ++ +GR + +I +P W F+ Sbjct: 361 GGWEKKPSFAPNGKLILFATESQGR--GILATVSSDGRVKQKMIAQRGDIREPIWGPFL 417 >gi|262373122|ref|ZP_06066401.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter junii SH205] gi|262313147|gb|EEY94232.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter junii SH205] Length = 427 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 184/365 (50%), Gaps = 35/365 (9%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 + +V DL RS F S++ + S+ + Q DW + G +V G++ + Sbjct: 54 IYPIVENDLNRSGRFTSASRN-----LPASASLNQIQASDWQNAGVPYVVVGQIKSINAN 108 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L+DV+ ++ ++ + + R+ H ISD IYQ++TG GDF+ RI +V Sbjct: 109 SFEVHYQLYDVQKQQYLLNEVLTVPNSRIRQAGHMISDAIYQALTGIAGDFSGRIAYVLR 168 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + + +L + D DG + + SRD IL P +SP+ +K+AY +++ + +YL Sbjct: 169 NQATPAQRYTLQIADTDGEQPKTVLSSRDPIL-SPTWSPDAKKIAYVSFETKRPA-IYLQ 226 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + + +FR + AP FS +G+ L + +IY ++L + +R+TN Sbjct: 227 DLATGQR-EVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLNTRQVKRMTNDSA 285 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 286 IDTEARYAPDGKSFIFTSDRGGSPQIYRYSFEDGSVKRLT-------FKGAFNARGTLSA 338 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKK 410 G+K A+ V + GS ++ ++D N ++P++SP+G+ ++++ + Sbjct: 339 ----DGKKIAL-VHRPSGSSYKVALQDINTGITNILTPTSLDESPSFSPNGQMVVYA-TR 392 Query: 411 DGDTG 415 +G+ G Sbjct: 393 EGNRG 397 >gi|42521812|ref|NP_967192.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus HD100] gi|67461965|sp|Q6MRB2|TOLB_BDEBA RecName: Full=Protein tolB; Flags: Precursor gi|39574342|emb|CAE77846.1| Adventurous gliding motility protein W [Bdellovibrio bacteriovorus HD100] Length = 461 Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 127/474 (26%), Positives = 223/474 (47%), Gaps = 61/474 (12%) Query: 18 CLLLVLIGGFFPTSIHA------FVKVATNSANYSPVSIAFTKFVSIDE-------LGGK 64 L L LI G FP HA ++K+ S ++ ++ +G + Sbjct: 5 ILALALIIGLFPLFSHAQNNNGIYIKLGEARTKKSLMAFPPLQYTGSPSTASRNQGVGVE 64 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP--------RFQDWNSLGAQVLVTGRV 116 + ++ DL S F I+Q +F + + +P +FQ W+S+GA L+ Sbjct: 65 IFNTITNDLTVSSYFQFINQSAFLEDTSKTGLMPAPGLPNGFKFQSWSSIGADFLIRAGY 124 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 G + + +E + V ++GKK+ +S R+IAHT ++D+ +++TG +G F SR Sbjct: 125 SVVGNE-VTLETYTYHVPRAALVLGKKYKGPTSSARRIAHTFANDVMKALTGVEGPFLSR 183 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY----- 231 ++ VS SG K + MD DGAN+ ++ R I P +SP+ +K+AY +Y Sbjct: 184 VV-VSSDKGSGQSK-EIFTMDWDGANMEQVSNHR-SISISPAWSPDGKKIAYTSYVKRVG 240 Query: 232 ---DDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQKDEAMDIYSV 287 + D+L L+D + + + ++R I FS++GK +++ + + DIY + Sbjct: 241 AKFRNADML---LLD--LTTGKRSLISYRQGINSGASFSADGKHIYLTISQGNSPDIYKM 295 Query: 288 DLQSNATERLTN--TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 L ++TN +N+ + SP + F SDR G+ +Y + G++ KRI+ Sbjct: 296 GLDGTLVGKITNGPAGALNVEPTVSPQ-GLLSFSSDRAGRPMIYTADAAGNNVKRIT--- 351 Query: 346 EASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-------SNLQAPT 396 A F+ P WSP G IAF S F I VM DG+ L ++ + P+ Sbjct: 352 FAGVFNSSPSWSPDGKKIAFAGQSDNNFDIFVMNADGTGMIRLTSAKKPNGRMASNEDPS 411 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI---NTPAYASDPQWVGFMD 447 +SP GR ++++ + G +++Y ++G E + N Y P+W +D Sbjct: 412 FSPDGRFVMYTSNRTGK--NQIYISTVDGTEERRVTNDNNNYY--KPKWSNNID 461 >gi|255319441|ref|ZP_05360656.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SK82] gi|262379404|ref|ZP_06072560.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SH164] gi|255303509|gb|EET82711.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SK82] gi|262298861|gb|EEY86774.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SH164] Length = 427 Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 114/422 (27%), Positives = 206/422 (48%), Gaps = 42/422 (9%) Query: 11 LNMKINLCLLLVLIGGFFP---TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +NM L L L F P T+ A + + A IA F + D+ + Sbjct: 1 MNMTRKTLLALALTAVFSPAITTTAFAQLHLEIAKAPEEAPKIAIAPFAN-DQ---SIYP 56 Query: 68 VVSKDLQRSDVFNLISQD-SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F S++ + N ++ Q W + +VTG + D V Sbjct: 57 IVESDLNRSGRFTSSSKNLPASAALNNINA----QSWQAAKIPYVVTGSIKSVAGDSYEV 112 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++L+DV+ + ++ + + PAS R+ H ISD IYQ++TG GDF+ RI +V + Sbjct: 113 HYQLYDVEKQTYLL-NELLTVPASRIRQAGHMISDAIYQALTGIPGDFSGRIAYVLRNPA 171 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + +L + D DG R + SRD IL P ++P+ +K+AY +++ + +Y+ D Sbjct: 172 TPEQRYTLQIADTDGEQPRTVLSSRDPIL-SPAWTPDAKKLAYVSFETKRPA-IYVQDLA 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + + +FR + AP FS +G+ L + ++Y +DL + +R+TN I+ Sbjct: 230 TGQR-EVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEVYQMDLTTRQLKRMTNNSAIDT 288 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 A Y+PD +F SDR G Q+Y KR++ F ++ +G L A Sbjct: 289 EARYAPDGKSFIFTSDRGGSAQIYRYSFADGSVKRLT-------FKGAFNARGTLSA--- 338 Query: 366 FSGEKFAIGVMKKDGSQERLLVED-----SNL-------QAPTWSPSGRSLIFSRKKDGD 413 G+K A+ V + GS ++ ++D +N+ ++P++SP+G+ ++++ ++G+ Sbjct: 339 -DGKKVAL-VHRPAGSNYKVAIQDIATGITNILTPTSLDESPSFSPNGQMVVYA-TREGN 395 Query: 414 TG 415 G Sbjct: 396 RG 397 >gi|255020046|ref|ZP_05292119.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] gi|254970575|gb|EET28064.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] Length = 436 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 179/381 (46%), Gaps = 17/381 (4%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 ++++V +DL+ S F++I+ D + +P ++ W GA LV G V G+D Sbjct: 67 IAQIVRQDLRYSGYFHVIAPDLYP---ADPHAVRGLSSTAWTKTGALTLVLGSVQSAGQD 123 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 RV+ + ++ D K I ++F + AS+ ++ +++ +Y+++TG G F I FV Sbjct: 124 -YRVQAYVVNLLDDKVIAARRFSGAAASYHQMGQDVANLVYRAVTGHPGPFRGHIAFVDA 182 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 G + L V DG + R + R ++ P +SP +AY +Y + + +Y+ Sbjct: 183 R--GGQFR--LQVAASDGWHPRTVLRGRIPVI-SPAWSPGHGHLAYVSYRHQHSV-IYIQ 236 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + R + + + + AP +S G A V +I ++L LT Sbjct: 237 NLRNGQR-REVPGHGAAQSAPAYSPGGHYLAFARVWGHGRTEIVRLNLADGQERVLTREG 295 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +N S ++P I+F S+R+G Q++ M NG +R+S + + P SP G I Sbjct: 296 TVNTSPVWTPSGRHILFVSNRDGSAQIFQMNRNGGGVRRLSFNGGYN-VSPAISPNGRWI 354 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F ++ VM + G R+L +N + P+++P GR L+F+ + G L + Sbjct: 355 GFIHADAGILSLAVMDRQGGDLRVLYAGANCERPSFAPDGRMLLFNTHQGGR--KVLAEV 412 Query: 422 DLNGRNETLINTPAYASDPQW 442 +NG+ + P A++ W Sbjct: 413 AINGKGLHFLQLPGQANEGSW 433 >gi|163751257|ref|ZP_02158485.1| tolB protein [Shewanella benthica KT99] gi|161328971|gb|EDQ00045.1| tolB protein [Shewanella benthica KT99] Length = 442 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 108/405 (26%), Positives = 201/405 (49%), Gaps = 37/405 (9%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGK 121 ++S+VV DL RS F + + Q+ N S+ +F +DW+S+GA+ +V G + G Sbjct: 53 QISDVVMSDLIRSGAFKPLDELGLPQR--NISSVSQFVAKDWSSIGAEAVVMGSIKPYGN 110 Query: 122 DRLRVEFRLWD-VKDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITG 168 D+ V F L D VK + Q I ++ S A +R+ H ISD +Y+ +TG Sbjct: 111 DQYLVTFDLVDLVKAQMQQGAGPQSNSEYLIDSRETVISAAQFRQYGHRISDLVYEELTG 170 Query: 169 EKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 +G F +R+ +V ++K+ L + D DG N + L S + L P +SP+ Sbjct: 171 IRGAFLTRLAYV-------VVKHGEKSPYQLMISDYDGYNEQMLLRSSEP-LMSPSWSPD 222 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +K+AY +++++ +++ D ++ ++ +F + AP FS +GK+ +++ KD Sbjct: 223 GRKLAYVSFENKKA-EIFIQDI-YTQSRNKVSSFNGINGAPVFSPDGKKLALTLSKDGQP 280 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY +D+ + A +R+TN I+ AS+ PD ++F S+R G+ Q+Y + +R++ Sbjct: 281 EIYVIDIATKALKRVTNHYAIDTEASWFPDGKSLIFTSERGGRPQIYKVTLASGKVQRLT 340 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + E + + +P G + F + KF I M + ++L ++P+ +P+G Sbjct: 341 FEGEWNLGGSI-APDGRSMIFVNRTNGKFNIARMDLETRFMQILTSTRLDESPSVAPNGT 399 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+ G L ++ +GR L P W F+ Sbjct: 400 MVIYGTTHQGK--QVLGAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|332993883|gb|AEF03938.1| translocation protein TolB [Alteromonas sp. SN2] Length = 451 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 115/461 (24%), Positives = 204/461 (44%), Gaps = 49/461 (10%) Query: 19 LLLVLIGGFFPTSIHAFVKV----ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L + I F + A +++ NSA P+ + K+ L +SEV+ DL Sbjct: 6 LWIAAIAMVFSAKVFATLEIVITEGINSAR--PIGVVPFKWKGTGTLPSDISEVIMADLM 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS F+ ++ Q D + + W SLG ++ G + EG D+ V ++L DV Sbjct: 64 RSGKFSPVATSKMPQMPETADEV-NYSAWASLGVDTVLVGSIEPEGTDKYLVSYQLVDVL 122 Query: 134 -------------------KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 + I ++ SP +R+ AH ISD +Y+ +TG +G F Sbjct: 123 KGQLDGGQSQVLKNGELVVSNEHVIAARQSIISPRDFRQYAHRISDVVYEKLTGVRGAFL 182 Query: 175 SRILFVSESVVSGIIKN--------SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 +RI +V I+++ L + D DG N L S + L P +SP+ +K+ Sbjct: 183 TRIAYV-------IVRDRDAYEKPYQLVISDYDGENETRLL-SSPEPLMSPVWSPDGEKL 234 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 AY ++++ ++++ D + + +F + +P FS +GK+ + + KD +IY Sbjct: 235 AYVSFENRRP-QIFIQDIYTSKR-TTVTDFPGINGSPSFSPDGKQLAMVLSKDGNPEIYV 292 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +DL + R+T I+ S+ PD S ++F S+R GK Q+Y + N +R++ E Sbjct: 293 MDLATKNLTRVTRNRAIDTEPSWLPDGSGLIFSSERGGKPQIYSVNLNSRKVRRVTFVGE 352 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + +P G + + + I DG ++L ++P+ +P+G +I+ Sbjct: 353 QN-LGATLTPDGKQMVVVNQTNGNYHIAKQALDGGSPQVLTRTFLDESPSVAPNGSMIIY 411 Query: 407 SRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 S +G L S+D GR L P W F+ Sbjct: 412 STLHEGTQVLSLVSLD--GRFKARLPAADGQVKSPSWSPFL 450 >gi|221134414|ref|ZP_03560719.1| Periplasmic component of the Tol biopolymer transport system [Glaciecola sp. HTCC2999] Length = 455 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 112/445 (25%), Positives = 210/445 (47%), Gaps = 45/445 (10%) Query: 33 HAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 HA + + N +P+++ + L G++S+V++ DL+RS FN ++ Q Sbjct: 24 HAQLNIVITEGVDNATPIAVVPFGWEGEGILPGELSDVINHDLRRSGRFNPMNMSQMPQF 83 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ------------ 138 + S+ +Q W G +V G+V + G DR +++F+L D + Q Sbjct: 84 PRDISSV-NYQSWVDKGINTIVVGKVKELGGDRFQIDFQLIDTQAGSQLEKSGQMLLDGQ 142 Query: 139 --------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS----ESVVS 186 I G+ + +R+ H ISD +Y+ +TG++G F +RI +V+ E+V Sbjct: 143 LVAGQSQLIAGRTLTVTGRDFRQFGHRISDIVYEKLTGQRGAFLTRIAYVAVRDRETVAR 202 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLM 242 L + D DG N L S++ L P +SP+ K+AY ++++ I +Y M Sbjct: 203 ---PYQLVIADYDGENELALLSSKEP-LMSPSWSPDGNKLAYVSFENGKPQIFIQDIYTM 258 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 +R+ ++ +F + APRFS +GK+ + + KD DIY +++ + R+T Sbjct: 259 -SRV-----KLTDFPGINGAPRFSPDGKKIAMVLSKDGNPDIYVMEIATRQLTRVTRHRA 312 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ S++P+ ++VF S+R GK Q+Y + + KR++ + + + + +L+ Sbjct: 313 IDTEPSWAPNGKELVFSSERGGKPQIYRVNLETNRIKRLTFEGDMNLGGTITPDGTELVV 372 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G DG+ + L + ++P+ +P+G +I+S +G L S+D Sbjct: 373 VNRTNGNYHIARQNLNDGAMQVLTTTFLD-ESPSIAPNGSMIIYSTLHEGTQVLSLVSLD 431 Query: 423 LNGR-NETLINTPAYASDPQWVGFM 446 GR L P W F+ Sbjct: 432 --GRFKARLPGVAGQIKAPSWSPFL 454 >gi|127512456|ref|YP_001093653.1| TolB domain-containing protein [Shewanella loihica PV-4] gi|166988083|sp|A3QD46|TOLB_SHELP RecName: Full=Protein tolB; Flags: Precursor gi|126637751|gb|ABO23394.1| TolB, N-terminal domain protein [Shewanella loihica PV-4] Length = 441 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 115/427 (26%), Positives = 204/427 (47%), Gaps = 25/427 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDL 73 NL L+L F A + + + IA FV + ++S+VV DL Sbjct: 3 NLGRWLILGLAFLTIPAKAALDIVITEGVDAARPIAVVPFVWQGSTPMPQQISDVVMSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD- 132 RS F + + Q+ + + W+++ A+ +V G V G D+ V F L D Sbjct: 63 TRSGTFKPMDELGLPQRNLGSLAQMDLKAWSNVAAEAVVMGTVKPYGPDQYLVNFELIDL 122 Query: 133 VKDRKQIIGKKFFS-----------SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 VK + Q G + S S A +R+ H ISD +Y+ +TG +G F +RI +V Sbjct: 123 VKAQMQSGGPQSASEYLLDSRETVISSAQFRQYGHRISDIVYEKLTGIRGAFLTRIAYV- 181 Query: 182 ESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VV K+ L + D DG N + L S + L P +SP+ +++AY +++++ V Sbjct: 182 --VVDHKAKSPYKLMIADYDGYNEQMLLRSPEP-LMSPAWSPDGRRLAYVSFENKQA-EV 237 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 ++ D + K + +F + AP FS +GK+ +++ KD +IY D+ + A +R+TN Sbjct: 238 FVQDIYTQQRTK-VTSFPGINGAPTFSPDGKKLALTLSKDGQPEIYVADIATKAIKRVTN 296 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I+ AS++PD ++F S+R G+ Q+Y + R++ + E + + SP G Sbjct: 297 HYAIDTEASWTPDGKSLIFTSERGGRPQIYQVALASGKVTRLTFEGEWNLGGSI-SPDGR 355 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + F + KF I M + ++L ++P+ +P+G +I+ G L Sbjct: 356 SMVFVNRTNGKFNIARMDLETRFMQVLTTTRLDESPSIAPNGTMVIYGTTYQGQ--QVLA 413 Query: 420 SIDLNGR 426 ++ ++GR Sbjct: 414 AVSMDGR 420 >gi|206602338|gb|EDZ38819.1| Putative TolB protein [Leptospirillum sp. Group II '5-way CG'] Length = 447 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 134/454 (29%), Positives = 218/454 (48%), Gaps = 46/454 (10%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF-VKVATN-SANYSPVSIAFTKFVSIDELGGKVSEV-- 68 + I+LC +L+ G FFP A + V TN +A + +S +VS+ SEV Sbjct: 15 LGISLCAILIGGGLFFPARARAVNLNVITNQTALFFKLS-----YVSLGARNLSPSEVRY 69 Query: 69 ----VSKDLQRSDVFNLIS-----QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 + +DL+ + F ++ Q S + DS+ + S G + + ++IK+ Sbjct: 70 ANALIVRDLEETGYFEIVPLSSGDQRSLGNMVLTGDSVRKLA---SSGLEGVAGAQLIKD 126 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 V + D + ++ +K+ ++ + R I H DDI TG KG ++RI F Sbjct: 127 DLGTHLVGI-VRDPVNGTVLLSRKY-TTTGNIRVIIHRFVDDIVFQFTGFKGVADARIAF 184 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDIL 237 + ++ G L VMD DG I LT R + + P +S ++ + Y +Y + IL Sbjct: 185 IGKNRRRGY---DLYVMDFDGEGIHRLTWDR-VLAYTPAWSLSRHLIVYTSYLHSEPQIL 240 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR---ALISVQKDEAMDIYSVDLQSNAT 294 L R R+P + F + + P FS N AL Q + +IYS D++ + Sbjct: 241 SYDLSTGR--RSP--LARFPGLNITPNFSRNSAMLAMALSKSQTSQNTEIYSYDMKYHRF 296 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--P 352 ERLT + N+S S+SPD SQIVF SDR+G Q++VM S+GS++ RIS +++ P Sbjct: 297 ERLTYSHSNNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRIS---FTGFYNVSP 353 Query: 353 VWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKK 410 WSP+GD IA+ + + I + G + L S +P WSP GR+++F+ + Sbjct: 354 SWSPRGDAIAYVCMNERHRPKICLTTPTGDRSLQLTHGSGQDDSPDWSPDGRTILFTHQV 413 Query: 411 DGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWV 443 G S + + L+G + L + P P W Sbjct: 414 KGH--SYIEKMFLDGTHVHRLGSYPHSVITPVWA 445 >gi|218516344|ref|ZP_03513184.1| translocation protein TolB [Rhizobium etli 8C-3] Length = 133 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/134 (47%), Positives = 92/134 (68%), Gaps = 1/134 (0%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 V + N P+ IA T F+ D +G +VS+V++ DLQRS +F I++ +F +KI+NP Sbjct: 1 MVTLDLRKGNVQPMPIAVTDFLQGD-MGAQVSQVIAADLQRSGLFAPINKSAFIEKISNP 59 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 D+ PRF+DW + AQ LVTGRV +E RLR EFRLWD +Q+ G++F++ P +WR++ Sbjct: 60 DASPRFEDWKVINAQALVTGRVTQEADGRLRAEFRLWDPFAGQQMTGQQFYTQPENWRRV 119 Query: 155 AHTISDDIYQSITG 168 AH I+D IY+ ITG Sbjct: 120 AHIIADAIYKQITG 133 >gi|186477204|ref|YP_001858674.1| translocation protein TolB [Burkholderia phymatum STM815] gi|226705871|sp|B2JGA0|TOLB_BURP8 RecName: Full=Protein tolB; Flags: Precursor gi|184193663|gb|ACC71628.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia phymatum STM815] Length = 430 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/440 (23%), Positives = 207/440 (47%), Gaps = 19/440 (4%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L ++ + L+ GG + HA + V + IA F + ++S +V Sbjct: 6 KLGLRALVASCLIAAGG----AAHAQLNVLVTGVGSTQFPIATANFANEANSPQQISTIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 +DLQRS F I D+ ++ DS+ W + GA V G V K + +V F+ Sbjct: 62 RQDLQRSGKFTNI--DAGSAPVSEGDSV-DLGAWKAKGANAFVAGSVTKLPNGQYQVRFK 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D +++ + G + S R AH ++D IY + G +G F +R+ +V ++ Sbjct: 119 LYDTVNQQSLGGLELVSPEGGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S +G+ +++ + I++V+ + RLT I+ SY Sbjct: 233 -VVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEPSY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G+ Q+Y M ++G + ++ P SP G +A+ + Sbjct: 292 SPDGQSIYFTSDRGGQPQIYKMPASGEASGGAQRVTFTGNYNTSPRVSPDGKQLAYISRT 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + + L + ++ ++P+++ +G+ ++++ + +G L ++ +GR Sbjct: 352 GGGFKLYIQDLQSGVATALTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVSTDGRT 409 Query: 428 ETLINTPAYA-SDPQWVGFM 446 +++ + +P W FM Sbjct: 410 RQVLSVQGGSVREPSWGPFM 429 >gi|124385902|ref|YP_001028613.1| translocation protein TolB [Burkholderia mallei NCTC 10229] gi|254207691|ref|ZP_04914041.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei JHU] gi|147751585|gb|EDK58652.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei JHU] Length = 431 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 195/441 (44%), Gaps = 18/441 (4%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ GG + HA V V + IA FV+ L +V+ VV Sbjct: 4 KLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVV 59 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F+ + D+ + S+ F W + GA V G V +E + +V F Sbjct: 60 RGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKVNFI 116 Query: 130 LWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 117 LYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT--GN 174 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 VYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLPTG 230 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 231 RR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDTEP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 290 FYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYIS 349 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +G F + V + + ++P+++ +G+ ++++R+ G + D + Sbjct: 350 RTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPSDGSA 409 Query: 426 RNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 410 PPQILSVQGGAIREPSWGPFM 430 >gi|71278150|ref|YP_268469.1| translocation protein TolB [Colwellia psychrerythraea 34H] gi|119371042|sp|Q484P6|TOLB_COLP3 RecName: Full=Protein tolB; Flags: Precursor gi|71143890|gb|AAZ24363.1| tolB protein [Colwellia psychrerythraea 34H] Length = 449 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 112/399 (28%), Positives = 194/399 (48%), Gaps = 32/399 (8%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I + E +S+V+S DL RS F+ I+ D F Q I++ +I + W +L Sbjct: 37 PIAIIPFNWTGTGERPELLSKVISDDLLRSGKFSPIAIDRFPQTISDAKAI-DYSAWANL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK----------------FFSSPAS 150 GA+ ++ G + + R +V ++L DV R QI G + S A+ Sbjct: 96 GAEAVLLGNINEVAPGRYQVSYQLVDVI-RGQITGGETSMLSNGELVNPKDHILAQSSAN 154 Query: 151 -----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV--SGIIKNSLCVMDRDGANI 203 R+ AH+IS+ IY+ +TG KG F S+I +V +V G L D DG N Sbjct: 155 IQLNQARRYAHSISNVIYEKLTGSKGAFLSKIAYV---IVRDQGKYPYQLAFADYDGFNE 211 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 L S++ L P + PN ++AY ++++ +++ +D K I +F + AP Sbjct: 212 HVLLSSKEP-LMSPSWHPNGDQLAYVSFENRQA-QIHSIDIYTG-VRKSISSFNGINSAP 268 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 RFS +GK + + KD D+Y ++L + R+T I+ S++PD + ++F S+R Sbjct: 269 RFSPDGKSMAMVLSKDGNPDLYVMELATMKLRRITRNRAIDTEPSWTPDGNSLIFSSERG 328 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 GK QLY + G +R++ D E + V +P G + + K+ + + Sbjct: 329 GKPQLYRVDLAGGKVRRLTFDGEVNLGGSV-TPDGKQLIMVNRTRGKYRLAKQELSSGLF 387 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++L E ++P+ SP+G +I+S + L S+D Sbjct: 388 QVLTETRLDESPSVSPNGGMIIYSTLHNNRQVLGLVSVD 426 >gi|238561025|ref|ZP_00442669.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei GB8 horse 4] gi|254175452|ref|ZP_04882112.1| tolB protein [Burkholderia mallei ATCC 10399] gi|254202357|ref|ZP_04908720.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei FMH] gi|254356407|ref|ZP_04972683.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei 2002721280] gi|147746604|gb|EDK53681.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei FMH] gi|148025404|gb|EDK83558.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei 2002721280] gi|160696496|gb|EDP86466.1| tolB protein [Burkholderia mallei ATCC 10399] gi|238525395|gb|EEP88823.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei GB8 horse 4] Length = 430 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 195/441 (44%), Gaps = 18/441 (4%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ GG + HA V V + IA FV+ L +V+ VV Sbjct: 3 KLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVV 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F+ + D+ + S+ F W + GA V G V +E + +V F Sbjct: 59 RGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKVNFI 115 Query: 130 LWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 LYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT--GN 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 VYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLPTG 229 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 RR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDTEP 288 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 FYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYIS 348 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +G F + V + + ++P+++ +G+ ++++R+ G + D + Sbjct: 349 RTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPSDGSA 408 Query: 426 RNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 PPQILSVQGGAIREPSWGPFM 429 >gi|152996216|ref|YP_001341051.1| translocation protein TolB [Marinomonas sp. MWYL1] gi|189035984|sp|A6VXD7|TOLB_MARMS RecName: Full=Protein tolB; Flags: Precursor gi|150837140|gb|ABR71116.1| Tol-Pal system beta propeller repeat TolB [Marinomonas sp. MWYL1] Length = 432 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/415 (24%), Positives = 205/415 (49%), Gaps = 12/415 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHA--FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 M CL ++ F +S A +++ + + P+++ + +D L ++++V Sbjct: 1 MMFKKCLSVLFTCLIFISSARAQLVIEITSGADQLLPIAVVPFGYEGVDALPEDIAQIVE 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS +F I + + + + ++DW L + +V G + K ++ R+ F L Sbjct: 61 ADLARSGLFQPIPRSNMLSMPSKEADV-FYRDWRLLKSDYVVIGAIKKLPNNQYRIGFEL 119 Query: 131 WDVKDRKQIIGKKFFS---SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 +V +K + +K S S ++R AH ISD +Y+ +TG +G F++RIL+V+ Sbjct: 120 LNVLSQKPV--QKHSSIDVSARNFRDAAHYISDKVYELLTGTRGAFSTRILYVTAEGDKK 177 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG + + S++ IL P +S + +K+AY + + +++ + Sbjct: 178 APLFKLQVADADGHRPQVVVESKEPIL-SPSWSMDGRKIAYVMFRNRRP-NIFIQELATG 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + ++I FR + AP +S +GK+ + + KD +IY++D+ + ER+TN I+ Sbjct: 236 KR-QQIAQFRGLNGAPAWSPDGKKLALVLSKDNNPEIYTLDIATQKLERMTNHYAIDTEP 294 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+ PD IVF SDR G Q+Y + N +R++ + + + + +P G + + + Sbjct: 295 SWEPDGKGIVFTSDRGGNPQIYRLDVNSKRVERVTFEGDLNTRARM-TPDGRYLVTVQKN 353 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I + + ++L E ++P+ +P+G ++++ G + S+D Sbjct: 354 DGNYHIALQDMKTGRVQILTETYLDESPSIAPNGSMVMYATTYQGKGILAVVSVD 408 >gi|119477235|ref|ZP_01617471.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2143] gi|119449598|gb|EAW30836.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2143] Length = 429 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/411 (26%), Positives = 209/411 (50%), Gaps = 22/411 (5%) Query: 46 SPVSIAFTKFVSIDELGG----KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 +P +IA F E GG V+ ++ DLQR+ F+ + ++ + + F+ Sbjct: 32 NPTAIAIVPFGW--EGGGIPKEDVATIIETDLQRTGQFSPVPKEDMLSTPQDKSEV-YFR 88 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 DW +L L+ G+++ + L+ E+ L+DV + ++ + S S R IAH ISD Sbjct: 89 DWRALNVDYLLVGKLVPTAEG-LQAEYALFDVYTQALVLEDRQTGSAESLRDIAHGISDR 147 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRF 219 +YQ +TG +G F++++L+VS +V G + + L + D DGA R + S++ IL P + Sbjct: 148 VYQKLTGIRGAFSTKLLYVS-AVGRGDAQYTYRLLISDVDGARERIIFESQEPIL-TPSW 205 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + +AY +++ +Y + R + ++ NF+ + AP +S +GK+ + + KD Sbjct: 206 SPDGETIAYVSFETTRP-AIYSHNLRTNER-SQLTNFKGLNGAPAWSPDGKQLAMVLSKD 263 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + DIY + + + +R+T I+ S+ PD +V+ SDR GK Q+Y + ++ Sbjct: 264 GSPDIYIMTVATRELKRVTRHFAIDTEPSWMPDGKSLVYTSDRGGKPQIYQVTLASGYEE 323 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 R++ + + V G +I + G I ++ + + +L E ++P+ +P Sbjct: 324 RVTFEGSYNAKAKVVPAGGGIIMVHRSMGRDH-IALLDIERGKINILTETDLDESPSIAP 382 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFMD 447 +G L+++ K G L ++ L+G + + P+ D P W F++ Sbjct: 383 NGAILLYATKVRGK--GVLAAVSLDGGTKYFM--PSRFGDVREPAWSPFLN 429 >gi|53725631|ref|YP_103660.1| translocation protein TolB [Burkholderia mallei ATCC 23344] gi|166998276|ref|ZP_02264136.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei PRL-20] gi|262193278|ref|YP_001081486.2| translocation protein TolB [Burkholderia mallei NCTC 10247] gi|67461934|sp|Q62I10|TOLB_BURMA RecName: Full=Protein tolB; Flags: Precursor gi|52429054|gb|AAU49647.1| tolB protein [Burkholderia mallei ATCC 23344] gi|243065356|gb|EES47542.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei PRL-20] gi|261826004|gb|ABN03191.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei NCTC 10229] gi|261835072|gb|ABO06119.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei NCTC 10247] Length = 433 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 117/444 (26%), Positives = 196/444 (44%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + D+ + S+ F W + GA V G V +E + +V Sbjct: 59 SVVRGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 174 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLA 348 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++R+ G + D Sbjct: 349 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPSD 408 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 GSAPPQILSVQGGAIREPSWGPFM 432 >gi|121600577|ref|YP_992167.1| translocation protein TolB [Burkholderia mallei SAVP1] gi|121229387|gb|ABM51905.1| tolB protein [Burkholderia mallei SAVP1] Length = 463 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 117/444 (26%), Positives = 196/444 (44%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 33 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 88 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + D+ + S+ F W + GA V G V +E + +V Sbjct: 89 SVVRGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKV 145 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 146 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 204 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 205 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 259 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 260 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 318 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 319 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLA 378 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++R+ G + D Sbjct: 379 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPSD 438 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 439 GSAPPQILSVQGGAIREPSWGPFM 462 >gi|226952117|ref|ZP_03822581.1| protein TolB precursor [Acinetobacter sp. ATCC 27244] gi|226837145|gb|EEH69528.1| protein TolB precursor [Acinetobacter sp. ATCC 27244] Length = 427 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 182/365 (49%), Gaps = 35/365 (9%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 + +V DL RS F SQ+ + S+ + Q DW + G +V G+ + Sbjct: 54 IYPIVESDLNRSGRFTSASQN-----LPATASMNQIQAGDWQNAGVPYVVVGQSKAINAN 108 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + ++L+DV+ ++ ++ + R+ H ISD IYQ++TG GDF+ RI +V Sbjct: 109 TFEIHYQLYDVQKQQYLLNEVLTVPAGRVRQAGHMISDAIYQALTGIPGDFSGRIAYVLR 168 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL Sbjct: 169 NQANPAQRYTLQIADTDGEQPKTVLSSRDPIL-SPTWTPDAKKIAYVSFETKRPA-IYLQ 226 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + + +FR + AP FS +G+ L + +IY ++L + +R+TN Sbjct: 227 DLATGQR-EVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLNTRQVQRMTNDTA 285 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ A YSPD +F SDR G Q+Y +R++ F ++ +G L A Sbjct: 286 IDTEARYSPDGKSFIFTSDRGGSPQIYRYTFADKSVRRLT-------FRGAFNARGTLSA 338 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKK 410 G++ A+ V + GS ++ ++D N ++P++SP+G+ ++++ + Sbjct: 339 ----DGKRLAL-VHRPSGSNYKVALQDINTGITNILTPTSLDESPSFSPNGQMVVYA-TR 392 Query: 411 DGDTG 415 +G+ G Sbjct: 393 EGNRG 397 >gi|226705864|sp|B4RTH4|TOLB_ALTMD RecName: Full=Protein tolB; Flags: Precursor Length = 451 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 112/454 (24%), Positives = 203/454 (44%), Gaps = 31/454 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L L + LI F ++ A +++ + P+ + K+ + G +S+VV DL Sbjct: 4 LGLWIALITMAFSANVSASLEIVITEGVDSARPIGVVPFKWKGQGSMPGDISKVVMADLM 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS FN +S D Q + + + W +LG ++ G + +G DR V + L DV Sbjct: 64 RSGKFNPVSVDKMPQFPETAEQV-SYTAWATLGVDTVLVGSIEPQGGDRFLVSYELIDVL 122 Query: 134 -------------------KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 + + ++ + +R+ AH ISD +Y+ +TG +G F Sbjct: 123 KGQVDNGQAKVLKNGSLVSSNNHVLAARQAVINGRDFRQYAHRISDIVYEKLTGVRGAFL 182 Query: 175 SRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++I +V + K L + D DG N L S + L P +SP+ +K+AY ++++ Sbjct: 183 TKIAYVIVRDRDTVEKPYQLVIADYDGENETRLL-SSPEPLMSPVWSPDGEKLAYVSFEN 241 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 ++++ D RI +F + +P FS +GK+ + + KD ++Y +DL + Sbjct: 242 RRP-QIFIQDIYTSER-TRITDFPGINSSPTFSPDGKQLAMVLSKDGNPELYVMDLATKN 299 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 R+T I+ ++ PD S ++F S+R GK Q+Y + N +R++ E + Sbjct: 300 LRRITRNRAIDTEPAWLPDGSGLIFSSERGGKPQIYSVNLNSGKVRRVTFVGEQN-LGGT 358 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G + + + I DG ++L ++P+ +P+G +I+S +G Sbjct: 359 LSPDGKQMIMVNQTNGNYHIAKQSLDGGSPQVLTRTYLDESPSVAPNGSMIIYSTLHEGT 418 Query: 414 TGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 L S+D GR L P W F+ Sbjct: 419 QVLSLVSLD--GRFKARLPAANGQVKSPSWSPFL 450 >gi|294648349|ref|ZP_06725857.1| TolB protein [Acinetobacter haemolyticus ATCC 19194] gi|292825761|gb|EFF84456.1| TolB protein [Acinetobacter haemolyticus ATCC 19194] Length = 427 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 182/365 (49%), Gaps = 35/365 (9%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 + +V DL RS F SQ+ + S+ + Q DW + G +V G+ + Sbjct: 54 IYPIVESDLNRSGRFTSASQN-----LPATASMNQIQASDWQNAGVPYVVVGQSKAINAN 108 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + ++L+DV+ ++ ++ + R+ H ISD IYQ++TG GDF+ RI +V Sbjct: 109 TFEIHYQLYDVQKQQYLLNEVLTVPAGRVRQAGHMISDAIYQALTGIPGDFSGRIAYVLR 168 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + + +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL Sbjct: 169 NQANPAQRYTLQIADTDGEQPKTVLSSRDPIL-SPTWTPDAKKIAYVSFETKRPA-IYLQ 226 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + + +FR + AP FS +G+ L + +IY ++L + +R+TN Sbjct: 227 DLATGQR-EVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLNTRQVQRMTNDTA 285 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ A YSPD +F SDR G Q+Y +R++ F ++ +G L A Sbjct: 286 IDTEARYSPDGKSFIFTSDRGGSPQIYRYTFADKSVRRLT-------FRGAFNARGTLSA 338 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKK 410 G++ A+ V + GS ++ ++D N ++P++SP+G+ ++++ + Sbjct: 339 ----DGKRLAL-VHRPSGSSYKVALQDINTGITNILTPTSLDESPSFSPNGQMVVYA-TR 392 Query: 411 DGDTG 415 +G+ G Sbjct: 393 EGNRG 397 >gi|124514218|gb|EAY55733.1| putative TolB protein [Leptospirillum rubarum] Length = 447 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 131/428 (30%), Positives = 209/428 (48%), Gaps = 45/428 (10%) Query: 11 LNMKINLCLLLVLIGG---FFPTSIHAFVKVATN-SANYSPVSIAFTKFVSIDELGGKVS 66 LN + + L+++LIG F P + + V TN +A + +S +VS+ E S Sbjct: 11 LNRVLEIPLIVILIGAALSFPPLARAVNLNVITNQTALFFKLS-----YVSLGERNLSPS 65 Query: 67 EV------VSKDLQRSDVFNLIS-----QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 EV + KDL+ + F L+ Q S DS+ + NS G + + + Sbjct: 66 EVRYANALIVKDLEETGYFELVPLSSGDQSSLGNMFLTGDSVRKLA--NS-GLEGVAGAQ 122 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 +IK+ V + D + ++ +K+ ++ + R I H DDI TG KG ++ Sbjct: 123 LIKDDLGTHLVGI-VRDPVNGTVLLSRKY-TTTGNIRVIIHRFVDDIVFQFTGFKGVADA 180 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DD 233 RI F+ ++ G L VMD DG I LT R + + P +S ++ + Y +Y + Sbjct: 181 RIAFIGKNRRRGY---DLYVMDFDGEGIHRLTWDR-VLAYTPAWSLSRHLIVYTSYLHSE 236 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR---ALISVQKDEAMDIYSVDLQ 290 IL L R RAP + F + + P FS N AL Q + +IYS D++ Sbjct: 237 PQILSYDLSTGR--RAP--LARFPGLNITPNFSRNSAMLAMALSKSQTSQNTEIYSYDMK 292 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + ERLT + N+S S+SPD SQIVF SDR+G Q++VM S+GS++ RIS ++ Sbjct: 293 VHRFERLTYSHSNNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRIS---FTGFY 349 Query: 351 D--PVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIF 406 + P WSP+GD IA+ + + I + G + L S +P WSP GR+++F Sbjct: 350 NVSPSWSPRGDAIAYVCMNERHRPKICLTTPTGDRSLQLTHGSGQDDSPDWSPDGRTILF 409 Query: 407 SRKKDGDT 414 + + G + Sbjct: 410 THQVKGHS 417 >gi|148244622|ref|YP_001219316.1| biopolymer transport protein TolB [Candidatus Vesicomyosocius okutanii HA] gi|166229993|sp|A5CWT2|TOLB_VESOH RecName: Full=Protein tolB; Flags: Precursor gi|146326449|dbj|BAF61592.1| biopolymer transport protein TolB [Candidatus Vesicomyosocius okutanii HA] Length = 424 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 107/401 (26%), Positives = 200/401 (49%), Gaps = 22/401 (5%) Query: 20 LLVLIGGFFPTSIHAFVKVAT--NSANYSPVSIAFTKFVSIDELGGKV-SEVVSKDLQRS 76 +V I + T A ++V N P+ I+ FV D GKV ++++ + RS Sbjct: 4 FIVFILSLYTTLSWAVLEVTIFKQEENTFPIVIS-DFFVVGDASQGKVIADIMRNNFNRS 62 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++++ + + S P F W + + +V G++ K K VE L DV + Sbjct: 63 GEFSVVNANYIIR------SKPSFDKWKAKKIEAIVLGKLEKISKKIFNVEIELLDVYSK 116 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS---GIIKNSL 193 K + F + R+IAH +SD IY ++ G++G FN+R+ +++ V++ G + L Sbjct: 117 KTLYKDIFTVHNSGIRRIAHYLSDQIYHALLGKRGFFNTRLAYIT--VINKDKGEREYRL 174 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + D D N + + SR+ +L P +SP Q K+AY ++ + V++ I R +++ Sbjct: 175 EISDSDAQNPQTILKSREPLL-SPVWSPKQDKIAYVSFKNSR-SEVFIQYPFIRRKIQKL 232 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 F + +P + NG+ L+++ K+ DIYS L S RLT + I+ ASYSPD Sbjct: 233 PYFDGIASSPSWHPNGEILLLTLSKNGNKDIYSYQLSSKKLTRLTIDMGIDTEASYSPDG 292 Query: 314 SQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 ++I+F S+R G+ Q+Y+ +++N ++ A V+SP G + + + Sbjct: 293 NKIIFTSNRSGQVQVYIKDLKTNKINRATFKGRYNA---QAVFSPDGKSLIMVHKIDQDY 349 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 I ++ +++ + ++P +SP+G +IF+ + G Sbjct: 350 RIALLDIATKDLKVMTNNQLDESPFFSPNGDMIIFATNQGG 390 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 317 VFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 V D+ +E +L + S+ + + I + +E PVWSP+ D IA+ F + + + Sbjct: 162 VINKDKGEREYRLEISDSDAQNPQTILKSREP-LLSPVWSPKQDKIAYVSFKNSRSEVFI 220 Query: 376 MKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + ++L D +P+W P+G L+ + K+G+ +YS L+ + T Sbjct: 221 QYPFIRRKIQKLPYFDGIASSPSWHPNGEILLLTLSKNGN--KDIYSYQLSSKKLT 274 >gi|119896708|ref|YP_931921.1| translocation protein TolB [Azoarcus sp. BH72] gi|166229974|sp|A1K2H9|TOLB_AZOSB RecName: Full=Protein tolB; Flags: Precursor gi|119669121|emb|CAL93034.1| putative translocation protein TolB [Azoarcus sp. BH72] Length = 427 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 106/417 (25%), Positives = 198/417 (47%), Gaps = 22/417 (5%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 S A + + A S + F + L VS++V DL+RS +F+L+ Sbjct: 22 SAQAQLSIEITGAGASRFPVIIPVFENEASLPRSVSDIVRADLERSGLFSLVDIG----P 77 Query: 91 ITNPDS-IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + P+ IP S GA + V +G R + FRL+D + + ++ + A Sbjct: 78 LPLPEGQIPDLGSLRSRGADAALAASVFPQGDGRYEIRFRLFDTQKQTELGALALRMTAA 137 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R AH I+D +Y+ +TG G F +RI +V V + L V D DG N + S Sbjct: 138 QNRITAHRIADFVYEKLTGLPGYFATRIAYV----VKTGPRYELQVADADGMNAQAALVS 193 Query: 210 RDQILFEPRFSPNQQKVAYATYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 R+ I+ P +SP+ ++AY +++ + I+ V+ + T + + NF+ AP +S + Sbjct: 194 REPII-SPAWSPDGGRLAYVSFEAKKPIIYVHTLATGQRQV---VANFKGSNSAPAWSPD 249 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G++ + + KD +Y ++ + RL ++ I+ ++SPD I F SDR G Q+ Sbjct: 250 GQQLSVVLTKDGLSQLYVLNADGSGVRRLASSSGIDTEPAWSPDGQWIYFTSDRGGSPQI 309 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSGEKFAIGVMKKDGSQERLL 386 Y + + G +R++ D ++ P D L+AF + +F + V Q +L Sbjct: 310 YRIPTAGGAAQRVTFD---GTYNVTARPSADGRLLAFITRNNGRFQVAVQDLTTRQTTIL 366 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQW 442 + + ++P+++P+GR ++++ G L ++ +GR + ++ A +P W Sbjct: 367 TDSARDESPSFAPNGRMILYATDAGGR--GVLAAVSSDGRVKQRLSVQAADVREPAW 421 >gi|158522221|ref|YP_001530091.1| beta-propeller repeat-containing to-pal system protein TolB [Desulfococcus oleovorans Hxd3] gi|226705875|sp|A8ZUI2|TOLB_DESOH RecName: Full=Protein tolB; Flags: Precursor gi|158511047|gb|ABW68014.1| Tol-Pal system beta propeller repeat TolB [Desulfococcus oleovorans Hxd3] Length = 438 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 107/397 (26%), Positives = 191/397 (48%), Gaps = 46/397 (11%) Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP------RFQDWNSLGAQVLVTGRVIKE 119 +++++ L+ + FNLI++ +F ++ PD ++W +GA+ L+TG V Sbjct: 60 ADLLADTLEFTRYFNLINRAAFLER---PDRTGVTLADIDCKNWRDIGAEFLITGGVTVA 116 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G + +E RL+DV + I+GKK+ P RK+ ++ + +TG G F SRI F Sbjct: 117 G-GMMEMELRLFDVFKERMILGKKYKGKPVDQRKMIRRFCAEVMEQLTGTPGIFESRIAF 175 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDIL 237 +S +G + + DG N + +T I P +S + Q +AY +Y D+ Sbjct: 176 IS----TGDGSKEIYACEFDGYNPQRIT-RNSSINLSPAWSSDGQWLAYTSYRKGGPDLY 230 Query: 238 RVYLMDTR--------IDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 +L + R I+ AP + G F +LA A +S + D+ +IY + Sbjct: 231 ITHLTENRGTVFSKEGINIAPSWVPGQF---MLA---------ATLSFEGDQ--EIYLLT 276 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 RLT + I++S ++SPD ++ F S R G Q+++M +R++ E Sbjct: 277 GSGTVVRRLTRSWGIDVSPTFSPDGKRMAFVSGRAGSPQIFIMDMGSGRTQRLT--FEGG 334 Query: 349 Y-FDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 Y +P W+P D IA+ +G F + V+ K G+ L + + ++P+WSP G + F Sbjct: 335 YNTNPSWNPVNDTIAYCAMTGGAFNVRVIDVKTGATVALTADQGDNESPSWSPDGSLIAF 394 Query: 407 SRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 S ++ S++Y + G + L+ P + P+W Sbjct: 395 SSTREAGV-SRIYVMTAAGTDPRRLLILPGEQTGPKW 430 >gi|73540499|ref|YP_295019.1| translocation protein TolB [Ralstonia eutropha JMP134] gi|119371052|sp|Q474K8|TOLB_RALEJ RecName: Full=Protein tolB; Flags: Precursor gi|72117912|gb|AAZ60175.1| TolB, N-terminal:WD40-like Beta Propeller [Ralstonia eutropha JMP134] Length = 450 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/415 (26%), Positives = 193/415 (46%), Gaps = 18/415 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD-VFNLISQDSFKQKITNP 94 + V + S + +A F + ++ ++ DL RS + N+ + + N Sbjct: 49 LNVEISGVGASQIPVATANFQGEAQAPQNLTAIIRSDLARSGRLRNVDPGGATVAESANV 108 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 D W S GA V G V G + V FRL+D + + G F + R Sbjct: 109 D----LGSWKSRGADAFVAGSVTPSGNGQYEVRFRLYDTVKGQSLGGLAFNVNQGQLRVT 164 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D IY+ + GE+G F +R+ +VS V G + L + D DG N + S + I+ Sbjct: 165 AHKIADYIYEKLLGERGVFATRLSYVSR--VGG--RYQLLISDSDGQNSQVALTSNEPII 220 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ ++VAY +++ + + VY+ D + + N + AP +S +G+ + Sbjct: 221 -SPSWSPDGRRVAYVSFEAKKPV-VYVHDLATGKR-TLVSNQKGNNSAPSWSPDGQHLAV 277 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y V+ + RLT + I+ YSPD I F SDR G Q+Y M + Sbjct: 278 ALSRDGNTQVYQVNADGSGIRRLTRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAG 337 Query: 335 GSDQKRISQDK-EASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 G + + + SY P SP G +A+ SG F + + L + SN Sbjct: 338 GEEAGSAQRVTFKGSYNVSPRISPDGKYLAYITRSG-GFKLQLQDLTNGDVTSLTDTSND 396 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFM 446 +AP+++ +G+ ++++ + G S L ++ +GR +++ + +P W FM Sbjct: 397 EAPSFAANGKYILYATRVGGR--SVLAAVSTDGRTRQVLSLQSGDVREPSWGPFM 449 >gi|239995973|ref|ZP_04716497.1| Periplasmic component of the Tol biopolymer transport system [Alteromonas macleodii ATCC 27126] Length = 451 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 117/460 (25%), Positives = 205/460 (44%), Gaps = 43/460 (9%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L L + LI F + A +++ + P+ + K+ + G +S+VV DL Sbjct: 4 LGLWIALITMAFSAKVFASLEIVITEGVDSARPIGVVPFKWKGQGSMPGDISKVVMADLM 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS FN +S D Q + + F W +LG ++ G + +G DR V + L DV Sbjct: 64 RSGKFNPVSVDKMPQYPETAEQV-SFTAWATLGVDTVLVGSIEPQGGDRYLVSYELIDVL 122 Query: 134 ------------KD-------------RKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 KD R+ +I + F R+ AH ISD +Y+ +TG Sbjct: 123 KGQVDNGQAKVLKDGNLVSSNDHVLAARQAVINGRDF------RQYAHRISDIVYEKLTG 176 Query: 169 EKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F ++I +V + K L + D DG N L S + L P +SP+ +K+A Sbjct: 177 VRGAFLTKIAYVIVRDRDTVEKPYQLVIADYDGENETRLL-SSPEPLMSPVWSPDGEKLA 235 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y ++++ ++++ + RI +F + +P FS +GK+ + + KD ++Y + Sbjct: 236 YVSFENRRP-QIFIQNIYTSER-TRITDFPGINSSPVFSPDGKQLAMVLSKDGNPELYVM 293 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 DL + R+T I+ ++ PD S ++F S+R GK Q+Y + N +R++ E Sbjct: 294 DLATKNLRRVTRNRAIDTEPAWLPDGSGLIFSSERGGKPQIYSVNLNSGKVRRVTFVGEQ 353 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + SP G + + + I DG ++L ++P+ +P+G +I+S Sbjct: 354 NLGGTI-SPDGKQMIMVNQTNGNYHIAKQSLDGGSPQVLTRTYLDESPSVAPNGSMIIYS 412 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +G L S+D GR L P W F+ Sbjct: 413 TLHEGTQVLSLVSLD--GRFKARLPAANGQVKSPSWSPFL 450 >gi|262193458|ref|YP_003264667.1| hypothetical protein Hoch_0133 [Haliangium ochraceum DSM 14365] gi|262076805|gb|ACY12774.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365] Length = 445 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/367 (28%), Positives = 181/367 (49%), Gaps = 22/367 (5%) Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V+ DL S F ++ SF + + Q W +GA ++ R+ + G ++ Sbjct: 71 KVMDFDLAVSGWFEVLDPRSFLADLRTEGLGIQPQKWKDVGAFGVIKHRISRSG-NQYTF 129 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E RL++V+ + K + R + H +D+ + TGE+G F S++ FV+ Sbjct: 130 EGRLYEVEKGSAAVLIKTYRG-GDLRALVHNFCNDVVEHYTGERGFFGSKMAFVTR---- 184 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATY--DDEDILRVYLMD 243 G + MD DG +R LT R+ L P +SP+ KVA+ +Y ++ D+ V Sbjct: 185 GSGGKQVMAMDFDGHGVRSLT--RNSSLNILPSWSPDGSKVAFTSYMRNNPDLYVVGAGG 242 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNTLF 302 R P RI M +S +G + +++ KD +IY + S A +RLTN Sbjct: 243 GR----PNRISKQSGMNTGASWSPDGSKIAVTLSKDGNPEIYIISASSGAILQRLTNDRA 298 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGD-- 359 I+ S ++SPD +I F SDR G Q++VM + G +R+S++ SY PVWSP+ D Sbjct: 299 IDTSPAWSPDGREIAFVSDRHGGPQIFVMSAAGGSPRRVSRN--GSYNTTPVWSPRKDKR 356 Query: 360 LIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 ++A+T G F I + G R+ + + P++SP+GR++ F+ ++ G + Sbjct: 357 MLAYTTRDGGTFDIVTLDLGTGDMVRITQGQGSNEEPSFSPNGRAIAFASERREGAGIYI 416 Query: 419 YSIDLNG 425 + D +G Sbjct: 417 ANADGSG 423 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 + ++D + LT +NI S+SPD S++ F S LYV+ + G RIS+ Sbjct: 191 VMAMDFDGHGVRSLTRNSSLNILPSWSPDGSKVAFTSYMRNNPDLYVVGAGGGRPNRISK 250 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN---LQ------- 393 + WSP G IA T + KDG+ E ++ S+ LQ Sbjct: 251 -QSGMNTGASWSPDGSKIAVT-----------LSKDGNPEIYIISASSGAILQRLTNDRA 298 Query: 394 ---APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQW 442 +P WSP GR + F + G G +++ + G + ++ +Y + P W Sbjct: 299 IDTSPAWSPDGREIAFVSDRHG--GPQIFVMSAAGGSPRRVSRNGSYNTTPVW 349 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 GA ++ LT R I P +SP+ +++A+ + D ++++M +P+R+ S Sbjct: 287 GAILQRLTNDR-AIDTSPAWSPDGREIAFVS-DRHGGPQIFVMSA-AGGSPRRVSRNGSY 343 Query: 260 ILAPRFSS-NGKRALISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P +S KR L +D DI ++DL + R+T N S+SP+ I Sbjct: 344 NTTPVWSPRKDKRMLAYTTRDGGTFDIVTLDLGTGDMVRITQGQGSNEEPSFSPNGRAIA 403 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 F S+R +Y+ ++GS +R A+ D W P Sbjct: 404 FASERREGAGIYIANADGSGTQRRVYSGVATSID--WGP 440 >gi|167618866|ref|ZP_02387497.1| translocation protein TolB [Burkholderia thailandensis Bt4] gi|257138090|ref|ZP_05586352.1| translocation protein TolB [Burkholderia thailandensis E264] gi|118574574|sp|Q2SYT0|TOLB_BURTA RecName: Full=Protein tolB; Flags: Precursor Length = 433 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 115/444 (25%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + D+ + S+ F W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNV--DAGGTPVPETASV-DFGAWKAKGANAFVAGSVSREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 174 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV + RLT + I+ Sbjct: 230 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGSGLHRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAGGESAGAAQRVTFTGSYNTSPRISPDGKLLA 348 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 349 YISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 408 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 GSAPPQILSVQGGAIREPSWGPFM 432 >gi|187251684|ref|YP_001876166.1| putative component of the Tol biopolymer transport system [Elusimicrobium minutum Pei191] gi|186971844|gb|ACC98829.1| Putative component of the Tol biopolymer transport system [Elusimicrobium minutum Pei191] Length = 428 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 114/437 (26%), Positives = 213/437 (48%), Gaps = 30/437 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSP-VSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L +LL+ ++ +A+ N P + IA K+ DE G K + +D+ R Sbjct: 9 LAMLLICTAAISYAQSDVYIGIASRGGNALPKLGIAQFKY---DE-GSKKAAAQVRDIMR 64 Query: 76 SDVFNLISQDSFKQ--KITNPDSIPRFQDWN-SLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 +D+ D ++ KI + + ++W + ++ ++ G V EG+D + + +++ Sbjct: 65 ADLMFSRHFDISEKGPKIDTANIVKTLEEWQKNTFSEFVLYGEVSSEGEDFI-INIFIYN 123 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 ++K + + + + R+++H SD + + +TG++G ++RI F + S Sbjct: 124 TSEKKPVFARSYRGKENALRRLSHIASDQVVKELTGKRGIADTRIAFAN----SATGNKE 179 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRAP 250 + + D DGAN++ LT R I PR+S + K+ Y +Y + D+ + L ++ +P Sbjct: 180 IYIADYDGANLKKLTTDR-SIALLPRWSKDG-KIYYTSYRYKNPDVFSIDLAAGKV--SP 235 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 I + + L S +G+ +++ I+ ++L++ + +LT+ ++ S SYS Sbjct: 236 VAI--TKGLELIGGVSPDGRSIILTRSGGTNPSIFEINLETGKSVQLTDKAGVDGSPSYS 293 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGE 369 PD I F S+R G Q+YVM +RI+ ++ D P WSP G+ I F + Sbjct: 294 PDGRFITFVSNRSGNPQIYVMDLQNGSTRRITS--SLNWADTPQWSPTGEWIVFAGRTAA 351 Query: 370 KFAIGVMKKD--GSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I + D G+Q R L DS N + PTWSP GR + F+ + G +LY +D +G Sbjct: 352 QNPIDIFLVDITGTQIRQLTSDSANNEDPTWSPDGRFIAFTTTRKGR--RQLYVMDADGS 409 Query: 427 NETLI-NTPAYASDPQW 442 L+ + P + P W Sbjct: 410 APHLLADIPGNSYTPHW 426 >gi|126440889|ref|YP_001060215.1| translocation protein TolB [Burkholderia pseudomallei 668] gi|126451941|ref|YP_001067479.1| translocation protein TolB [Burkholderia pseudomallei 1106a] gi|134280578|ref|ZP_01767289.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 305] gi|217420955|ref|ZP_03452460.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 576] gi|237813605|ref|YP_002898056.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei MSHR346] gi|254191662|ref|ZP_04898165.1| putative TolB protein [Burkholderia pseudomallei Pasteur 52237] gi|254258828|ref|ZP_04949882.1| putative TolB protein [Burkholderia pseudomallei 1710a] gi|254299065|ref|ZP_04966515.1| putative TolB protein [Burkholderia pseudomallei 406e] gi|126220382|gb|ABN83888.1| putative TolB protein [Burkholderia pseudomallei 668] gi|126225583|gb|ABN89123.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 1106a] gi|134248585|gb|EBA48668.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 305] gi|157809130|gb|EDO86300.1| putative TolB protein [Burkholderia pseudomallei 406e] gi|157939333|gb|EDO95003.1| putative TolB protein [Burkholderia pseudomallei Pasteur 52237] gi|217396367|gb|EEC36384.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 576] gi|237506221|gb|ACQ98539.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei MSHR346] gi|254217517|gb|EET06901.1| putative TolB protein [Burkholderia pseudomallei 1710a] Length = 430 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 116/441 (26%), Positives = 194/441 (43%), Gaps = 18/441 (4%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ GG + HA V V + IA FV+ L +V+ VV Sbjct: 3 KLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVV 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F+ + D+ + S+ F W + GA V G V +E + +V F Sbjct: 59 RGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKVNFI 115 Query: 130 LWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 LYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT--GN 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 VYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLPTG 229 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 RR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDTEP 288 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 FYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYIS 348 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +G F + V + + ++P+++ +G+ ++++ + G + D + Sbjct: 349 RTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSDGSA 408 Query: 426 RNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 PPQILSVQGGAIREPSWGPFM 429 >gi|167580763|ref|ZP_02373637.1| translocation protein TolB [Burkholderia thailandensis TXDOH] Length = 433 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/444 (25%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + D+ + S+ F W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNV--DAGGTPVPETASV-DFGAWKAKGANAFVAGSVSREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 174 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV + RLT + I+ Sbjct: 230 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSSGSGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAGGESAGAAQRVTFTGSYNTSPRISPDGKLLA 348 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 349 YISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 408 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 GSAPPQILSVQGGAIREPSWGPFM 432 >gi|15641838|ref|NP_231470.1| translocation protein TolB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727646|ref|ZP_01680749.1| tolB protein [Vibrio cholerae V52] gi|147674437|ref|YP_001217372.1| translocation protein TolB [Vibrio cholerae O395] gi|153214273|ref|ZP_01949290.1| tolB protein [Vibrio cholerae 1587] gi|153800415|ref|ZP_01955001.1| tolB protein [Vibrio cholerae MZO-3] gi|153828587|ref|ZP_01981254.1| tolB protein [Vibrio cholerae 623-39] gi|227081965|ref|YP_002810516.1| tolB protein [Vibrio cholerae M66-2] gi|229508067|ref|ZP_04397572.1| TolB protein precursor [Vibrio cholerae BX 330286] gi|229511694|ref|ZP_04401173.1| TolB protein precursor [Vibrio cholerae B33] gi|229515216|ref|ZP_04404676.1| TolB protein precursor [Vibrio cholerae TMA 21] gi|229518833|ref|ZP_04408276.1| TolB protein precursor [Vibrio cholerae RC9] gi|229523854|ref|ZP_04413259.1| TolB protein precursor [Vibrio cholerae bv. albensis VL426] gi|229529141|ref|ZP_04418531.1| TolB protein precursor [Vibrio cholerae 12129(1)] gi|229607628|ref|YP_002878276.1| translocation protein TolB [Vibrio cholerae MJ-1236] gi|254848922|ref|ZP_05238272.1| tolB protein [Vibrio cholerae MO10] gi|255745402|ref|ZP_05419351.1| TolB protein precursor [Vibrio cholera CIRS 101] gi|297579355|ref|ZP_06941283.1| tolB protein [Vibrio cholerae RC385] gi|298498125|ref|ZP_07007932.1| tol-Pal system beta propeller repeat protein TolB [Vibrio cholerae MAK 757] gi|32699719|sp|Q9KR11|TOLB_VIBCH RecName: Full=Protein tolB; Flags: Precursor gi|172047657|sp|A5F753|TOLB_VIBC3 RecName: Full=Protein tolB; Flags: Precursor gi|254764844|sp|C3LND9|TOLB_VIBCM RecName: Full=Protein tolB; Flags: Precursor gi|10441440|gb|AAG17042.1|AF187269_4 TolB [Vibrio cholerae O395] gi|9656363|gb|AAF94984.1| tolB protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630033|gb|EAX62440.1| tolB protein [Vibrio cholerae V52] gi|124115421|gb|EAY34241.1| tolB protein [Vibrio cholerae 1587] gi|124124041|gb|EAY42784.1| tolB protein [Vibrio cholerae MZO-3] gi|146316320|gb|ABQ20859.1| tolB protein [Vibrio cholerae O395] gi|148875982|gb|EDL74117.1| tolB protein [Vibrio cholerae 623-39] gi|227009853|gb|ACP06065.1| tolB protein [Vibrio cholerae M66-2] gi|227013735|gb|ACP09945.1| tolB protein [Vibrio cholerae O395] gi|229332915|gb|EEN98401.1| TolB protein precursor [Vibrio cholerae 12129(1)] gi|229337435|gb|EEO02452.1| TolB protein precursor [Vibrio cholerae bv. albensis VL426] gi|229343522|gb|EEO08497.1| TolB protein precursor [Vibrio cholerae RC9] gi|229347921|gb|EEO12880.1| TolB protein precursor [Vibrio cholerae TMA 21] gi|229351659|gb|EEO16600.1| TolB protein precursor [Vibrio cholerae B33] gi|229355572|gb|EEO20493.1| TolB protein precursor [Vibrio cholerae BX 330286] gi|229370283|gb|ACQ60706.1| TolB protein precursor [Vibrio cholerae MJ-1236] gi|254844627|gb|EET23041.1| tolB protein [Vibrio cholerae MO10] gi|255737232|gb|EET92628.1| TolB protein precursor [Vibrio cholera CIRS 101] gi|297536949|gb|EFH75782.1| tolB protein [Vibrio cholerae RC385] gi|297542458|gb|EFH78508.1| tol-Pal system beta propeller repeat protein TolB [Vibrio cholerae MAK 757] gi|327484391|gb|AEA78798.1| tolB protein precursor [Vibrio cholerae LMA3894-4] Length = 450 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 36/456 (7%) Query: 17 LCLLLVLIG-GFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+LIG GF + A V T+ + + P++I K+ +L VS V++ DLQ Sbjct: 5 LVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS F+ + Q + + + F W S+G L+TG + + + + ++L D+ Sbjct: 65 RSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIV 123 Query: 134 -------------KDRKQIIGK------KFFSSPAS-WRKIAHTISDDIYQSITGEKGDF 173 +D + ++ K K + PAS R+ AH I+D +Y+ +TGE+G F Sbjct: 124 RGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAF 183 Query: 174 NSRILFVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ Sbjct: 184 LTRIAYV---VVNDKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL + Sbjct: 240 QNGQA-EIYMMNIYSGKR-EKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLAT 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 +T+ N + PD ++F SDR GK Q+Y + +G + KR++ + Sbjct: 298 RRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGG 357 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +P G + S F + + ++L + ++P+ +P+G +I+S + Sbjct: 358 QI-TPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYN 416 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + SID GR L T P W F+ Sbjct: 417 KANVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|53720374|ref|YP_109360.1| translocation protein TolB [Burkholderia pseudomallei K96243] gi|167720990|ref|ZP_02404226.1| translocation protein TolB [Burkholderia pseudomallei DM98] gi|167739947|ref|ZP_02412721.1| translocation protein TolB [Burkholderia pseudomallei 14] gi|167817184|ref|ZP_02448864.1| translocation protein TolB [Burkholderia pseudomallei 91] gi|167825597|ref|ZP_02457068.1| translocation protein TolB [Burkholderia pseudomallei 9] gi|167847081|ref|ZP_02472589.1| translocation protein TolB [Burkholderia pseudomallei B7210] gi|167895665|ref|ZP_02483067.1| translocation protein TolB [Burkholderia pseudomallei 7894] gi|167904058|ref|ZP_02491263.1| translocation protein TolB [Burkholderia pseudomallei NCTC 13177] gi|167912315|ref|ZP_02499406.1| translocation protein TolB [Burkholderia pseudomallei 112] gi|167920272|ref|ZP_02507363.1| translocation protein TolB [Burkholderia pseudomallei BCC215] gi|254194869|ref|ZP_04901299.1| putative TolB protein [Burkholderia pseudomallei S13] gi|67461935|sp|Q63RA8|TOLB_BURPS RecName: Full=Protein tolB; Flags: Precursor gi|118574573|sp|Q3JP75|TOLB_BURP1 RecName: Full=Protein tolB; Flags: Precursor gi|52210788|emb|CAH36772.1| putative periplasmic TolB protein [Burkholderia pseudomallei K96243] gi|169651618|gb|EDS84311.1| putative TolB protein [Burkholderia pseudomallei S13] Length = 433 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + D+ + S+ F W + GA V G V +E + +V Sbjct: 59 SVVRGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 174 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLA 348 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 349 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 408 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 GSAPPQILSVQGGAIREPSWGPFM 432 >gi|77360809|ref|YP_340384.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas haloplanktis TAC125] gi|119371051|sp|Q3IJ16|TOLB_PSEHT RecName: Full=Protein tolB; Flags: Precursor gi|76875720|emb|CAI86941.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas haloplanktis TAC125] Length = 452 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 119/455 (26%), Positives = 204/455 (44%), Gaps = 87/455 (19%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 CL+L+L GF + A V T + + P++I K+ I + K+SEV++ DL RS Sbjct: 9 CLILLL--GFQGVANAALEIVITEGIDGARPIAIVPFKYQGIGPIPQKISEVIAADLMRS 66 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F + Q+ + DS + W + G + ++ G V ++ R V + L DV R Sbjct: 67 GKFKPVDVAQMPQQPSK-DSDINYASWVNKGVEAILVGEVEQQSNGRYLVRYELVDVI-R 124 Query: 137 KQIIG---------------------KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 QI G ++ S +R+ +H ISD IY+ +TGEKG F + Sbjct: 125 GQITGGQTQMMTNGKLIKNQDHILEARESIISDTGFRRYSHRISDVIYEKLTGEKGAFLT 184 Query: 176 RILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +I +V I++++ L V D DG N + L S++ L P +SP+ K+AY Sbjct: 185 KIAYV-------IVRDNDDRPYQLVVSDYDGFNEQVLLRSKEP-LMSPAWSPDGTKLAYV 236 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE--AMDIYSV 287 T+++ ++Y+ D + + + ++ + AP+FS +GK+ L+ + KD+ A ++Y + Sbjct: 237 TFENRQS-QIYIQDLYSGKR-ELVTSYPGINGAPQFSPDGKKLLLVLSKDKTGATEVYLL 294 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 DL + RLT I+ S+ P+ IVF S+R G Q+Y + +R+S D + Sbjct: 295 DLVTRKETRLTRHRSIDTEPSWHPNGQDIVFTSERGGNAQIYKLNLKTGRTQRLSFDGDM 354 Query: 348 SYF------------------------------------------DPVWSPQGDLIAFTK 365 + P +P G +I ++ Sbjct: 355 NLAGSITPDGKELVMVNRTNGQYHLAKKELATGAFQVLTRTRLDESPSIAPNGSMIIYST 414 Query: 366 FSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 K + ++ DG + RL V D ++AP WSP Sbjct: 415 LHNNKQVLALVSMDGRFKARLPVLDGQVKAPAWSP 449 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYF 350 + R+++ ++ ++ ++I + R+ + QL V +G +++ + + KE Sbjct: 164 SHRISDVIYEKLTGEKGAFLTKIAYVIVRDNDDRPYQLVVSDYDGFNEQVLLRSKEP-LM 222 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRK 409 P WSP G +A+ F + I + + L+ + AP +SP G+ L+ Sbjct: 223 SPAWSPDGTKLAYVTFENRQSQIYIQDLYSGKRELVTSYPGINGAPQFSPDGKKLLLVLS 282 Query: 410 KDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 KD +++Y +DL R ET L + ++P W Sbjct: 283 KDKTGATEVYLLDLVTRKETRLTRHRSIDTEPSW 316 >gi|226330928|ref|ZP_03806446.1| hypothetical protein PROPEN_04851 [Proteus penneri ATCC 35198] gi|225201723|gb|EEG84077.1| hypothetical protein PROPEN_04851 [Proteus penneri ATCC 35198] Length = 432 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 210/450 (46%), Gaps = 27/450 (6%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGG 63 + + LN+ L +L V T +A V++ T N + P+ + K+ ++ Sbjct: 1 MMKQALNVIFGLLILCVT------TLANAEVRIEITQGVNTARPIGVVPFKWEGTGQMPE 54 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQK-ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 ++ V++ DL+ S FN I Q+ +T + P W +LG +V GRV Sbjct: 55 DIAGVIAADLRNSGKFNPIDVSRIPQQPVTASEVQPAL--WTALGIDSVVVGRVQPSADG 112 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 + V ++L DV ++ + F P+ W R AHT SD++++ +TG +G F +RI +V Sbjct: 113 QYLVSYQLVDVAGSPGAVLSQSEFKVPSKWLRYSAHTASDEVFEKLTGIRGAFRTRIAYV 172 Query: 181 SESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDIL 237 VV+ G L V D DG N + S Q L P +SP+ K+AY T++ + L Sbjct: 173 ---VVTNGGAYPYELRVSDYDGFNQDRVYRS-SQPLMSPAWSPDGAKLAYVTFESGQSAL 228 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + T R +I +F AP FS +G + ++ K ++++Y +DL S ++ Sbjct: 229 VVQTLATGEIR---QIASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMDLASGNMTQV 285 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN N ++ PD +V+ SD+ G+ Q+Y + NG +RI+ + + + +P SP Sbjct: 286 TNGRSNNTEPNWMPDGQTLVYTSDQGGRPQIYKVNINGGTPERITWEGKQNQ-NPAVSPD 344 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + + I + + + L + + P+ +P+G +I+S + T + Sbjct: 345 GSFLVMVSSESGRQHIAKQDLETNSVQYLTDTFLDETPSIAPNGTMVIYSSTQGLGTILQ 404 Query: 418 LYSIDLNGR-NETLINTPAYASDPQWVGFM 446 L S D GR L T P W FM Sbjct: 405 LVSTD--GRFKARLPATDGQVKSPAWSPFM 432 >gi|153000267|ref|YP_001365948.1| translocation protein TolB [Shewanella baltica OS185] gi|166988082|sp|A6WM46|TOLB_SHEB8 RecName: Full=Protein tolB; Flags: Precursor gi|151364885|gb|ABS07885.1| Tol-Pal system beta propeller repeat TolB [Shewanella baltica OS185] Length = 442 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 110/400 (27%), Positives = 195/400 (48%), Gaps = 29/400 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N ++ +FQ W+S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGTVAQFQANSWSSVGAEALVLGTVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L V D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK I++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYII 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L ++ +GR L P W F+ Sbjct: 405 TTYQGK--QVLAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|187922764|ref|YP_001894406.1| translocation protein TolB [Burkholderia phytofirmans PsJN] gi|226705872|sp|B2T077|TOLB_BURPP RecName: Full=Protein tolB; Flags: Precursor gi|187713958|gb|ACD15182.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia phytofirmans PsJN] Length = 430 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/443 (23%), Positives = 206/443 (46%), Gaps = 19/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + HA + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AAHAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I D+ + DS+ W + GA V+G V + + V Sbjct: 59 TIVRQDLQRSGKFTNI--DAGSTPVAETDSV-DLGSWKAKGANAFVSGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRR-VVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 +SPD I F SDR G+ Q+Y M + G + + ++ P SP G +A+ Sbjct: 289 PCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 G F + + G+ L + ++ ++P+++ +G+ ++++ + +G L ++ + Sbjct: 349 SRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVSTD 406 Query: 425 GRNETLINTPAYA-SDPQWVGFM 446 GR +++ + +P W FM Sbjct: 407 GRTRQVLSVQGGSVREPSWGPFM 429 >gi|83720845|ref|YP_441919.1| translocation protein TolB [Burkholderia thailandensis E264] gi|83654670|gb|ABC38733.1| tolB protein [Burkholderia thailandensis E264] Length = 463 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/444 (25%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 33 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 88 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + D+ + S+ F W + GA V G V +E + +V Sbjct: 89 SIVRADLARSGKFTNV--DAGGTPVPETASV-DFGAWKAKGANAFVAGSVSREPNGQYKV 145 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 146 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 204 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 205 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 259 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV + RLT + I+ Sbjct: 260 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGSGLHRLTRSSSID 318 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 319 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAGGESAGAAQRVTFTGSYNTSPRISPDGKLLA 378 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 379 YISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 438 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 439 GSAPPQILSVQGGAIREPSWGPFM 462 >gi|54309711|ref|YP_130731.1| translocation protein TolB [Photobacterium profundum SS9] gi|67461961|sp|Q6LP47|TOLB_PHOPR RecName: Full=Protein tolB; Flags: Precursor gi|46914149|emb|CAG20929.1| putative TolB protein [Photobacterium profundum SS9] Length = 449 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 210/464 (45%), Gaps = 53/464 (11%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LC+ L+ + + +SA P+ I + +L +S V++ DLQ Sbjct: 7 MGLCIALLSFSQIAQAELELVITEGIDSAR--PIGIIPFTWEGEGKLPTDISSVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPR--FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 RS F+ I+ Q PDS + ++ W ++G LVTG+V K + V ++L D Sbjct: 65 RSGKFSPIATSKMPQ---TPDSEEQIDYRAWTAMGVDALVTGKVTKNAEGNYVVNYQLVD 121 Query: 133 V---------------------KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 V KD ++ + R+ AH ISD +Y+++TGE+G Sbjct: 122 VVRGQLTSGESRGLANGELVLTKDH-LLVNNRAIVKETRLRQYAHRISDVVYEALTGEQG 180 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V V+ K+ L V D DG N R + SR Q L P +SP+ K+AY Sbjct: 181 AFLTRIAYV---VIDDKSKHPYQLRVADYDGFNERLVLKSR-QPLMSPAWSPDGSKLAYV 236 Query: 230 TYDDEDILRVYLMD----TR--IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 +++++ ++Y+MD TR + P+ G +PRFS +GK+ + + K ++ Sbjct: 237 SFENQQA-QIYIMDIYKGTRELVTSYPRHNG-------SPRFSPDGKKLALVLSKTGSLQ 288 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY DL++ ++T+ N A + PD ++F SDR G+ Q+Y + + KR++ Sbjct: 289 IYIKDLKTKKLTQITSGRANNTEAFWDPDGKSLIFTSDRGGQPQIYRVNLADNSTKRLTW 348 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + +P G + S F I ++L + ++P+ +P+G Sbjct: 349 QGSQNLGGQL-TPDGRYLVMVNRSDTGFNIAKQDLKTGAVQILTKTFLDESPSIAPNGGM 407 Query: 404 LIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+S + L SID GR L T P W F+ Sbjct: 408 VIYSSVNNKSNELSLVSID--GRFKARLPTTNGRVRAPSWGPFL 449 >gi|76811659|ref|YP_334628.1| translocation protein TolB [Burkholderia pseudomallei 1710b] gi|242315897|ref|ZP_04814913.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 1106b] gi|76581112|gb|ABA50587.1| tolB protein [Burkholderia pseudomallei 1710b] gi|242139136|gb|EES25538.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 1106b] Length = 463 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 33 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 88 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + D+ + S+ F W + GA V G V +E + +V Sbjct: 89 SVVRGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKV 145 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 146 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 204 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 205 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 259 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 260 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 318 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 319 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLA 378 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 379 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 438 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 439 GSAPPQILSVQGGAIREPSWGPFM 462 >gi|167837694|ref|ZP_02464577.1| translocation protein TolB [Burkholderia thailandensis MSMB43] Length = 433 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + D+ + S+ F W + GA V G V +E + +V Sbjct: 59 SVVRADLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTIKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 174 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRISPDGKLLA 348 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 349 YISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 408 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 GSAPPQILSVQGGAIREPSWGPFM 432 >gi|160874900|ref|YP_001554216.1| translocation protein TolB [Shewanella baltica OS195] gi|189035987|sp|A9KY50|TOLB_SHEB9 RecName: Full=Protein tolB; Flags: Precursor gi|160860422|gb|ABX48956.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS195] gi|315267137|gb|ADT93990.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS678] Length = 442 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 111/402 (27%), Positives = 199/402 (49%), Gaps = 33/402 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N ++ +FQ W+S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGTVAQFQANSWSSVGAEALVLGTVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L V D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK I++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYII 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 G L ++ +GR + + PA + P W F+ Sbjct: 405 TTYQGK--QVLAAVSTDGRFKARL--PAGQGEVKSPSWSPFL 442 >gi|270156706|ref|ZP_06185363.1| Tol-Pal system beta propeller repeat protein TolB [Legionella longbeachae D-4968] gi|289164847|ref|YP_003454985.1| TolB protein [Legionella longbeachae NSW150] gi|269988731|gb|EEZ94985.1| Tol-Pal system beta propeller repeat protein TolB [Legionella longbeachae D-4968] gi|288858020|emb|CBJ11880.1| TolB protein [Legionella longbeachae NSW150] Length = 419 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 202/445 (45%), Gaps = 37/445 (8%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N I L LLL F + A T N S + IA F + ++ +V+ Sbjct: 2 INRIIKLFLLL------FMQQVFALDLELTQGVN-SALPIAINSF-GANGTAQEIGQVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F ++S P+ LGA +VTGRV + G +R V F L Sbjct: 54 NDLNLSGQFRIVSGPQ------GPNGQSSVNTLRQLGADSVVTGRVTQVG-NRYEVSFTL 106 Query: 131 WD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D V ++ K + S R +AH ISD++YQ +TGE+G F++RI ++S I Sbjct: 107 TDAVAKGATLLTKTYQISANQIRPLAHHISDEVYQKLTGERGVFSTRIAYISVQRTPKIT 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S D I+ P +SP+ + ++Y +++ + + + ++ Sbjct: 167 RYSLEVADADGYNPQSLLVSGDPIM-SPAWSPDGKSISYVSFEKK---KAQIFTVSVETG 222 Query: 250 PKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +R I +F + AP +S +G + + + K IYSVD+ S ++LT I+ Sbjct: 223 QRRLITSFPGINGAPAWSPDGNQLAVVLSKSGTPKIYSVDIHSGTMKQLTFGDAIDTEPR 282 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFT 364 Y+PD I+F S R G Q+Y + + R++ + ASY +P I Sbjct: 283 YAPDGKSILFTSGRGGSPQIYRLSLATGEVARVTFEGNYNARASY-----TPDMKNIVML 337 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +F IG+ G L ++P+ +P+GR ++++ D G L + L+ Sbjct: 338 HRDDRQFNIGLQSAAGGPILSLTSSGRDESPSVAPNGRLVLYATHNQ-DKGV-LGIVSLD 395 Query: 425 GRNETLINTPAYASD---PQWVGFM 446 GR + PA D P W ++ Sbjct: 396 GR--IRMRLPAREGDVQEPAWSPYL 418 >gi|209517620|ref|ZP_03266458.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. H160] gi|209501916|gb|EEA01934.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. H160] Length = 430 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/440 (24%), Positives = 203/440 (46%), Gaps = 19/440 (4%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L ++ + L+ +GG + +A + V + IA T F + +VS +V Sbjct: 6 KLGLRTLVATCLIAVGG----AANAQLNVLVTGVGSTQFPIATTNFANEANSPQQVSTIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 +DLQRS F I D+ ++ DS+ W + GA V G V + + V F+ Sbjct: 62 RQDLQRSGKFTNI--DAGSTPVSETDSV-DLGAWKAKGANAFVAGSVNRLPNGQYEVRFK 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 119 LYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGNRGAFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 KYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S +G+ +++ + I++V+ + RLT I+ +Y Sbjct: 233 -VVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEPTY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G Q+Y M + G + ++ P SP G +A+ Sbjct: 292 SPDGQWIYFTSDRGGAPQIYKMPAQGESAGSAQRVTFTGSYNTSPRVSPDGKELAYISRV 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ +GR Sbjct: 352 GGAFKLYLQDLQGGSATGLTDTAHDESPSFAANGQYILYATQVNGR--GVLAAVSTDGRT 409 Query: 428 ETLINT-PAYASDPQWVGFM 446 +++ +P W FM Sbjct: 410 RQVLSVQGGNVREPSWGPFM 429 >gi|226194238|ref|ZP_03789837.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei Pakistan 9] gi|225933703|gb|EEH29691.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei Pakistan 9] Length = 421 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/434 (26%), Positives = 191/434 (44%), Gaps = 18/434 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 + L+ GG + HA V V + IA FV+ L +V+ VV DL RS Sbjct: 1 MASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVVRGDLARS 56 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F+ + D+ + S+ F W + GA V G V +E + +V F L+D + Sbjct: 57 GKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKVNFILYDTVKQ 113 Query: 137 KQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + + G +S RK H I+D IYQ + G +G FN+R+ +V + + K L Sbjct: 114 QSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT--GNVYK--LL 169 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D R I Sbjct: 170 ISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLPTGRR-YVIS 226 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N + AP +S +G+ +++ IYSV RLT + I+ YSPD Sbjct: 227 NQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDTEPFYSPDGK 286 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 I F SDR G Q+Y M + G + ++ P SP G L+A+ +G F Sbjct: 287 WIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRTGGGFK 346 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + V + + ++P+++ +G+ ++++ + G + D + + L Sbjct: 347 LYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSDGSAPPQILSV 406 Query: 433 TPAYASDPQWVGFM 446 +P W FM Sbjct: 407 QGGAIREPSWGPFM 420 >gi|167563919|ref|ZP_02356835.1| translocation protein TolB [Burkholderia oklahomensis EO147] gi|167571054|ref|ZP_02363928.1| translocation protein TolB [Burkholderia oklahomensis C6786] Length = 433 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 195/444 (43%), Gaps = 18/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + D+ + S+ F W + GA V G V +E + +V Sbjct: 59 SVVRGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVSREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT- 174 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K L + D DG N S++ I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 -GNVYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELKKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRR-YVISNQKGNNSAPAWSPDGQTLSVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRISPDGKLLA 348 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 349 YISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRGVLAAVPSD 408 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 GSAPPQILSVQGGAIREPSWGPFM 432 >gi|304409844|ref|ZP_07391464.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS183] gi|307304200|ref|ZP_07583953.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica BA175] gi|304352362|gb|EFM16760.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS183] gi|306913098|gb|EFN43521.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica BA175] Length = 442 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/400 (27%), Positives = 195/400 (48%), Gaps = 29/400 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N ++ +FQ W+S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGTVAQFQANSWSSVGAEALVLGTVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L V D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK +++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAVTLSKDGQPEIYII 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L ++ +GR L P W F+ Sbjct: 405 TTYQGK--QVLAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|254180824|ref|ZP_04887422.1| putative TolB protein [Burkholderia pseudomallei 1655] gi|184211363|gb|EDU08406.1| putative TolB protein [Burkholderia pseudomallei 1655] Length = 430 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/441 (26%), Positives = 194/441 (43%), Gaps = 18/441 (4%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ GG + HA V V + IA F++ L +V+ VV Sbjct: 3 KLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFLNEASLPQQVTSVV 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F+ + D+ + S+ F W + GA V G V +E + +V F Sbjct: 59 RGDLARSGKFSNV--DAGSTPVPETASV-DFGAWKAKGANAFVAGSVNREPNGQYKVNFI 115 Query: 130 LWDVKDRKQIIGKKFFSSP--ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L+D ++ + G +S RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 LYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRT--GN 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + K L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 VYK--LLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLPTG 229 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 RR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDTEP 288 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 FYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYIS 348 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +G F + V + + ++P+++ +G+ ++++ + G + D + Sbjct: 349 RTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSDGSA 408 Query: 426 RNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 PPQILSVQGGAIREPSWGPFM 429 >gi|118574590|sp|Q3B584|TOLB_PELLD RecName: Full=Protein tolB; Flags: Precursor Length = 436 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 122/449 (27%), Positives = 212/449 (47%), Gaps = 38/449 (8%) Query: 12 NMKINLCLLLVLIGGF-FPTSIHAFVK--VATNSANYSPVSIAFTKFVSIDELGGKVS-- 66 ++++ LLL I F FP S A +A +++ K ++ GGK S Sbjct: 4 SIRLTAALLLAFIACFSFPLSAMALEGEYIAIRKEGAGRIALVLGKPLA---EGGKASAW 60 Query: 67 -----EVVSKDLQRSDVFNLISQ--DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 + + L + +FN+I + F+ + ++ F NS+GA++ G + E Sbjct: 61 SAELDREIREGLAFTGIFNMIPPPLNLFETGGSGKRTL-NFGALNSIGAEIFAGGSLASE 119 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 R+++ +++ K I+ K + P R IAH D+ + +TG + F S I+F Sbjct: 120 -AGRVKLSMAVYETFGAKPILSKTYSGRPDELRTIAHAFCADLVKLLTGRRSVFGSNIVF 178 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR 238 VS SG + C DG ++ LT SR I P SP+ ++A+ Y L+ Sbjct: 179 VSNR--SGFKEIYSCAF--DGGSLSQLTRSRS-ISLTPALSPDGTRLAFTDYTSGRPGLK 233 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA-LISVQKDEAMDIYSVDLQSNATERL 297 + M R A ++ G + + P + SNG+ A +S + D+ DIY V + ++ Sbjct: 234 IMNMADRRISAVRQSG----VSIDPGWRSNGEVATTLSFEGDQ--DIYLVRPDGTLSRKV 287 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T++ I++S S+SPD +++ F S R G Q++++ +R++ + + P WSP Sbjct: 288 TSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLTYNGNYNT-QPSWSPG 346 Query: 358 GDLIAFTKF--SGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 GD IA+T +GE I ++ DGS RL ++P+WSP G ++F+ + G Sbjct: 347 GDKIAYTTMEKNGE-INIFTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQ- 404 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQW 442 KLY ++ NG N+ L+ P W Sbjct: 405 -KKLYVMNANGDNQRRLLQMEGEQMQPSW 432 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 11/161 (6%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI---GN 255 DG R +T SR I P FSP+ K+A+ + + +V+++D + +R+ GN Sbjct: 280 DGTLSRKVTSSRG-IDLSPSFSPDGTKMAFVSARFGNP-QVFILDLGTGQT-RRLTYNGN 336 Query: 256 FRSMILAPRFSSNG-KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + + P +S G K A +++K+ ++I+++ + RLT+ N S S+SP Sbjct: 337 YNTQ---PSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGATRLTSGARENESPSWSPGGD 393 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 IVF S R+G+++LYVM +NG +Q+R+ Q E P WS Sbjct: 394 MIVFTSGRQGQKKLYVMNANGDNQRRLLQ-MEGEQMQPSWS 433 >gi|170727076|ref|YP_001761102.1| translocation protein TolB [Shewanella woodyi ATCC 51908] gi|226705894|sp|B1KIF6|TOLB_SHEWM RecName: Full=Protein tolB; Flags: Precursor gi|169812423|gb|ACA87007.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella woodyi ATCC 51908] Length = 442 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 109/405 (26%), Positives = 197/405 (48%), Gaps = 37/405 (9%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGK 121 ++S+VV DL RS FN I + Q+ N + +F ++W+++ A+ +V G V G Sbjct: 53 QISDVVMSDLARSGTFNPIDELGLPQR--NIAKVSQFVAKEWSNVAAEAVVMGSVKPMGP 110 Query: 122 DRLRVEFRLWD-VKDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITG 168 D+ V F L D VK + Q I + S +R+ H ISD +Y+ +TG Sbjct: 111 DQFLVNFELVDLVKAQMQAGNGPQSSSEYLIDSSEVVISAEQFRQYGHRISDIVYEKLTG 170 Query: 169 EKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 +G F +RI +V ++K+ L + D DG N + L S + L P +SP+ Sbjct: 171 IRGAFLTRIAYV-------VVKHGEKSPYHLMISDYDGHNEKMLLRSPEP-LMSPSWSPD 222 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 K+AY +++++ V++ + +A +I ++ + AP FS +GK+ +++ +D Sbjct: 223 GSKLAYVSFENKKA-EVFVQNI-YTQARAKITSYDGINGAPVFSPDGKKLALTLSRDGQP 280 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY VD+ + A +R+TN I+ AS+ PD ++F S+R G+ Q+Y + +R++ Sbjct: 281 EIYVVDIDTKALKRVTNHYAIDTEASWFPDGKSLIFTSERGGRPQIYKVTLASGKVQRMT 340 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + E + + SP G + F + KF I M + ++L ++P+ +P+G Sbjct: 341 FEGEWNLGGSI-SPDGRSMIFVNRTNGKFNIARMDLETRFVQVLTSTRLDESPSVAPNGT 399 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+ G L ++ +GR L P W F+ Sbjct: 400 MVIYGTTYQGK--QVLAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|78186497|ref|YP_374540.1| TolB protein, putative [Chlorobium luteolum DSM 273] gi|78166399|gb|ABB23497.1| TolB protein, putative [Chlorobium luteolum DSM 273] Length = 449 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 122/449 (27%), Positives = 212/449 (47%), Gaps = 38/449 (8%) Query: 12 NMKINLCLLLVLIGGF-FPTSIHAFVK--VATNSANYSPVSIAFTKFVSIDELGGKVS-- 66 ++++ LLL I F FP S A +A +++ K ++ GGK S Sbjct: 17 SIRLTAALLLAFIACFSFPLSAMALEGEYIAIRKEGAGRIALVLGKPLA---EGGKASAW 73 Query: 67 -----EVVSKDLQRSDVFNLISQ--DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 + + L + +FN+I + F+ + ++ F NS+GA++ G + E Sbjct: 74 SAELDREIREGLAFTGIFNMIPPPLNLFETGGSGKRTL-NFGALNSIGAEIFAGGSLASE 132 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 R+++ +++ K I+ K + P R IAH D+ + +TG + F S I+F Sbjct: 133 -AGRVKLSMAVYETFGAKPILSKTYSGRPDELRTIAHAFCADLVKLLTGRRSVFGSNIVF 191 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR 238 VS SG + C DG ++ LT SR I P SP+ ++A+ Y L+ Sbjct: 192 VSNR--SGFKEIYSCAF--DGGSLSQLTRSRS-ISLTPALSPDGTRLAFTDYTSGRPGLK 246 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA-LISVQKDEAMDIYSVDLQSNATERL 297 + M R A ++ G + + P + SNG+ A +S + D+ DIY V + ++ Sbjct: 247 IMNMADRRISAVRQSG----VSIDPGWRSNGEVATTLSFEGDQ--DIYLVRPDGTLSRKV 300 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T++ I++S S+SPD +++ F S R G Q++++ +R++ + + P WSP Sbjct: 301 TSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLTYNGNYNT-QPSWSPG 359 Query: 358 GDLIAFTKF--SGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 GD IA+T +GE I ++ DGS RL ++P+WSP G ++F+ + G Sbjct: 360 GDKIAYTTMEKNGE-INIFTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQ- 417 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQW 442 KLY ++ NG N+ L+ P W Sbjct: 418 -KKLYVMNANGDNQRRLLQMEGEQMQPSW 445 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 11/161 (6%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI---GN 255 DG R +T SR I P FSP+ K+A+ + + +V+++D + +R+ GN Sbjct: 293 DGTLSRKVTSSRG-IDLSPSFSPDGTKMAFVSARFGNP-QVFILDLGTGQT-RRLTYNGN 349 Query: 256 FRSMILAPRFSSNG-KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + + P +S G K A +++K+ ++I+++ + RLT+ N S S+SP Sbjct: 350 YNTQ---PSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGATRLTSGARENESPSWSPGGD 406 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 IVF S R+G+++LYVM +NG +Q+R+ Q E P WS Sbjct: 407 MIVFTSGRQGQKKLYVMNANGDNQRRLLQ-MEGEQMQPSWS 446 >gi|294140561|ref|YP_003556539.1| tolB protein [Shewanella violacea DSS12] gi|293327030|dbj|BAJ01761.1| tolB protein [Shewanella violacea DSS12] Length = 442 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 105/405 (25%), Positives = 197/405 (48%), Gaps = 37/405 (9%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGK 121 ++S+VV DL RS F + Q+ N ++ +F +DW+S+ A+ ++ G V G Sbjct: 53 QISDVVMSDLTRSGTFKPLDDLGLPQR--NISNVSQFVAKDWSSIEAEAVIMGSVKPRGN 110 Query: 122 DRLRVEFRLWDVK------------DRKQII-GKKFFSSPASWRKIAHTISDDIYQSITG 168 D+ V F L D+ R+ +I ++ + A +R H ISD +Y+ +TG Sbjct: 111 DQYLVTFDLVDLAKAQMQQGAGPRSSREYLIDSRETVITAAQFRHYGHRISDLVYEKLTG 170 Query: 169 EKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 +G F + I +V ++K+ L + D DG N + L S + L P +SP+ Sbjct: 171 IRGAFLTHIAYV-------MVKHGEKSPYQLMISDYDGHNEQMLLRSAEP-LMSPSWSPD 222 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 K+AY +++++ +++ D ++ ++ +F+ + AP FS +GK+ +++ KD Sbjct: 223 GSKLAYVSFENKKS-EIFIQDI-YTQSRHKVTSFKGINGAPVFSPDGKKLALTLSKDGQP 280 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY +D+ + A +R+TN I+ AS+ PD ++F S+R G+ Q+Y +R++ Sbjct: 281 EIYVIDIATKALKRVTNHYAIDTEASWFPDGKSLIFTSERGGRPQIYKATLASGKVQRLT 340 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + E + V +P G + F + KF I M + ++L ++P+ +P+G Sbjct: 341 YEGEWNLGGSV-APDGRSMIFVNRTNGKFNIARMDLETHFMQVLSSTRLDESPSVAPNGT 399 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+ DG L ++ +GR L P W F+ Sbjct: 400 MVIYGTTHDGK--QVLGAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|315126276|ref|YP_004068279.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas sp. SM9913] gi|315014790|gb|ADT68128.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas sp. SM9913] Length = 452 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 116/460 (25%), Positives = 208/460 (45%), Gaps = 88/460 (19%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 KI + L++++G F HA +++ P++I K+ I + ++S+V++ Sbjct: 4 KIKIACLVLILG--FQGVAHAALEIVITEGIDGARPIAIVPFKYQGIGPIPEQLSDVIAA 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F +S Q+ + D + W + G + ++ G V ++ R V + L Sbjct: 62 DLMRSGKFKPVSVSQMPQQ-PHKDGDIDYGAWVNKGVEAVLVGEVEQQTNGRYLVRYELV 120 Query: 132 DVKDRKQIIG---------------------KKFFSSPASWRKIAHTISDDIYQSITGEK 170 DV R QI G ++ +R+ +H ISD IY+ +TGEK Sbjct: 121 DVI-RGQITGGETQMMSNGKLVQSQDHILEARQSVIGETGFRRYSHRISDVIYEKLTGEK 179 Query: 171 GDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 G F ++I +V I++++ L V D DG N + L S++ L P +SP+ Sbjct: 180 GAFLTKIAYV-------IVRDTEEKPYQLVVADYDGFNEQVLLRSKEP-LMSPVWSPDGT 231 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE--AM 282 K+AY T+++ ++Y+ D + + I +++ + AP+FS +GK+ L+ + KD+ A Sbjct: 232 KLAYVTFENRQS-QIYIQDIYTGKR-ELITSYKGINGAPQFSPDGKKLLLVLSKDKTGAT 289 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY------------- 329 ++Y +DL + RLT I+ S+ P+ IVF S+R G Q+Y Sbjct: 290 EVYLLDLLTRKETRLTRHRSIDTEPSWYPNGEDIVFTSERGGNAQIYKLNLKTGRTQRLT 349 Query: 330 ------------------VMQSNGSDQKRISQDKEASYF-----------DPVWSPQGDL 360 VM + + Q +++ + A+ P +P G + Sbjct: 350 FDGDMNLAGSISPDGKELVMVNRTNGQYHLAKKELATGAFQVLTRTRLDESPSIAPNGSM 409 Query: 361 IAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 I ++ K + ++ DG + RL V D ++AP WSP Sbjct: 410 IIYSTLHNNKQVLALVSMDGRFKARLPVLDGQVKAPAWSP 449 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYF 350 + R+++ ++ ++ ++I + R+ +E QL V +G +++ + + KE Sbjct: 164 SHRISDVIYEKLTGEKGAFLTKIAYVIVRDTEEKPYQLVVADYDGFNEQVLLRSKEP-LM 222 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRK 409 PVWSP G +A+ F + I + + L+ + AP +SP G+ L+ Sbjct: 223 SPVWSPDGTKLAYVTFENRQSQIYIQDIYTGKRELITSYKGINGAPQFSPDGKKLLLVLS 282 Query: 410 KDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 KD +++Y +DL R ET L + ++P W Sbjct: 283 KDKTGATEVYLLDLLTRKETRLTRHRSIDTEPSW 316 >gi|217973704|ref|YP_002358455.1| translocation protein TolB [Shewanella baltica OS223] gi|254764842|sp|B8EAK3|TOLB_SHEB2 RecName: Full=Protein tolB; Flags: Precursor gi|217498839|gb|ACK47032.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS223] Length = 442 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 110/400 (27%), Positives = 194/400 (48%), Gaps = 29/400 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N + +FQ W+S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGTAAQFQANSWSSVGAEALVLGTVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L V D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK I++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYII 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L ++ +GR L P W F+ Sbjct: 405 TTYQGK--QVLAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|212634657|ref|YP_002311182.1| translocation protein TolB [Shewanella piezotolerans WP3] gi|226705893|sp|B8CLE4|TOLB_SHEPW RecName: Full=Protein tolB; Flags: Precursor gi|212556141|gb|ACJ28595.1| TolB protein [Shewanella piezotolerans WP3] Length = 442 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 114/421 (27%), Positives = 204/421 (48%), Gaps = 39/421 (9%) Query: 50 IAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNS 105 IA FV + ++S+VV DL RS F+ + S Q+ N ++ +F + W + Sbjct: 37 IAVVPFVWQGTGPMPSQISDVVMSDLARSGTFSPSDELSLPQR--NISTLAQFDAKAWMA 94 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQ------------IIGKKFFSSPASWR 152 A+ +V G + G D+ V F+L D VK + Q I ++ S A +R Sbjct: 95 QPAEAVVMGSIKPYGADKYLVSFQLIDLVKAQLQSGAGPQAANDLVIDSRETVISAAQFR 154 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYL 206 + H ISD +Y+ +TG +G F +RI +V ++K+ L + D DG N + L Sbjct: 155 QYGHRISDVVYEKLTGIRGAFLTRIAYV-------VVKHGEKSPYQLMISDYDGYNEQML 207 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S + L P +SP+ Q++AY ++++ V++ + +A K++ +F + AP FS Sbjct: 208 LRSPEP-LMSPSWSPDGQQLAYVSFENRKA-EVFVQNI-YTQARKKVTSFNGINGAPVFS 264 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +GK+ +++ KD DIY VD+ ++A +R+TN I+ S+ PD ++ S+R G+ Sbjct: 265 PDGKKLALTLSKDGQPDIYVVDIATSALKRVTNHYSIDTEPSWFPDGKSLLLTSERGGRP 324 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 QLY + + R++ + E + + +P G I F + KF I M + ++L Sbjct: 325 QLYRVFLDSGKISRLTFEGEWNLGGSI-APDGRSIVFVNRTNGKFNIARMDLETRFMQVL 383 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+ +P+G +I+ G L ++ ++GR L P W F Sbjct: 384 TSTRLDESPSLAPNGTMVIYGTTYQGK--QVLAAVSMDGRFKARLPVGQGEVKSPSWSPF 441 Query: 446 M 446 + Sbjct: 442 L 442 >gi|222873073|gb|EEF10204.1| predicted protein [Populus trichocarpa] Length = 358 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 11/327 (3%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 +V + + IA F + K+S ++ DL+RS F + + T S Sbjct: 40 RVEVTGVGLTQLPIAIAAFKGEGQAPQKISAIIQADLERSGQFRAVDTAGVQLDET---S 96 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 P W A L G + + R V FRLWDV + + G+ F + R +AH Sbjct: 97 RPDVAMWRQKSADSLAVGSITRLADGRYDVRFRLWDVVKGQDLGGQGFAVTTGDLRLVAH 156 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ISD IY+ +TGEKG F++RI +V+++ + L V D DG N + S + I+ Sbjct: 157 RISDYIYEKLTGEKGVFSTRIAYVTKAGSN----YRLWVADADGENAQSALSSPEPII-S 211 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP ++AY +++ + VY+ D R + + NFR AP +S +G +++ Sbjct: 212 PAWSPTGTQLAYVSFESRKPV-VYVHDVASGRR-RLVANFRGSNSAPAWSPDGNSLAVTL 269 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D +Y + Q RL + I+ ++S D I F SDR G Q+Y + ++G Sbjct: 270 SRDGGSQLYLISAQGGEPRRLMQSSGIDTEPNFSSDGRSIYFVSDRGGAPQIYKVPASGG 329 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAF 363 +R++ + P SP G +A+ Sbjct: 330 SAERVTFTGNYN-ISPSVSPDGKWLAY 355 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 IS ++SP +Q+ + S K +YV S ++R+ + S P WSP G+ +A T Sbjct: 210 ISPAWSPTGTQLAYVSFESRKPVVYV-HDVASGRRRLVANFRGSNSAPAWSPDGNSLAVT 268 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + ++ G + R L++ S + P +S GRS+ F + G ++Y + Sbjct: 269 LSRDGGSQLYLISAQGGEPRRLMQSSGIDTEPNFSSDGRSIYFVSDRGG--APQIYKVPA 326 Query: 424 NGRNETLIN-------TPAYASDPQWVGFM 446 +G + + +P+ + D +W+ ++ Sbjct: 327 SGGSAERVTFTGNYNISPSVSPDGKWLAYV 356 >gi|126173975|ref|YP_001050124.1| translocation protein TolB [Shewanella baltica OS155] gi|166988081|sp|A3D3E2|TOLB_SHEB5 RecName: Full=Protein tolB; Flags: Precursor gi|125997180|gb|ABN61255.1| TolB, N-terminal domain protein [Shewanella baltica OS155] Length = 442 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 110/400 (27%), Positives = 194/400 (48%), Gaps = 29/400 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N + +FQ W+S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGTAAQFQANSWSSVGAEALVLGTVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L V D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK I++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYII 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L ++ +GR L P W F+ Sbjct: 405 TTYQGK--QVLAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|330815668|ref|YP_004359373.1| Putative TolB protein [Burkholderia gladioli BSR3] gi|327368061|gb|AEA59417.1| Putative TolB protein [Burkholderia gladioli BSR3] Length = 433 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 117/447 (26%), Positives = 204/447 (45%), Gaps = 24/447 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA FV+ L V+ Sbjct: 3 LMTKLGFRALVASCLIAAG----STANAQVNVLITGVGSTQFPIATANFVNEGGLPQSVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIP-RFQDWNSLGAQVLVTGRVIKEGKDRLR 125 VV DL R+ F+ + D+ I P++ P + W + GA LV G V ++ +++ Sbjct: 59 AVVRADLARTGKFSNV--DAGSTPI--PETAPVDYGAWKAKGANALVAGTVNRDASGQVK 114 Query: 126 VEFRLWDVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V+F L+D ++ + G + S RK H I+D IYQ + G +G F++R+ +V+ S Sbjct: 115 VDFMLFDTLKQQSLGGLSLTAGGDAESMRKTGHKIADFIYQKLMGVRGVFSTRLSYVTRS 174 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 K L + D DG N S + I+ P +SP+ KVAY +++ + VY+ D Sbjct: 175 GG----KYRLLISDSDGENAVPALTSSEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHD 228 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R I N + AP +S +G+ +++ IYSV RLT + I Sbjct: 229 LPTGRR-YVISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSATGTGLRRLTQSSSI 287 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLI 361 + YSPD I F SDR G Q+Y M + G + ++ P SP G L+ Sbjct: 288 DTEPFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGSAQRVTFTGSYNTSPRVSPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + ++ ++P+++ +G+ ++++ + +G S L ++ Sbjct: 348 AYISRTGGGFKLYVQDLQTGAANAVTNTTHDESPSFAANGQYILYATQANGR--SVLAAV 405 Query: 422 DLNGRNETLINTPAYAS--DPQWVGFM 446 +G + I S +P W FM Sbjct: 406 PSDGSSPPQILPVQGGSFREPSWGPFM 432 >gi|194290407|ref|YP_002006314.1| translocation protein tolb [Cupriavidus taiwanensis LMG 19424] gi|193224242|emb|CAQ70251.1| colicin transporter component [Cupriavidus taiwanensis LMG 19424] Length = 457 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 107/420 (25%), Positives = 198/420 (47%), Gaps = 22/420 (5%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF-NLISQDSFKQKI 91 HA + V + S +A F + ++ ++ DL RS F N+ + + Sbjct: 53 HAQLNVEISGVGSSQFPVATANFQGEAQAPQNLTAIIRSDLARSGRFRNVDPGGATVAES 112 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 N D W + GA V G V + V FRL+D + + G F + + Sbjct: 113 ANVD----LGSWKARGADAFVAGSVTPAAGGKYEVRFRLYDTVKGQSLGGLAFTVNQSQL 168 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IY+ + GE+G F +R+ +VS+ V G + L + D DG N + S + Sbjct: 169 RVTAHKIADYIYEKLLGERGVFATRLSYVSK--VGG--RYQLLISDSDGQNAQVALTSNE 224 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ +VAY +++ + + VY+ D + + N + AP +S +G+ Sbjct: 225 PII-SPSWSPDGARVAYVSFEAKKPV-VYVHDLASGKR-TLVSNQKGNNSAPSWSPDGRH 281 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D +Y V+ + RL+ + I+ YSPD I F SDR G Q+Y M Sbjct: 282 LALALSRDGNTQVYQVNADGSGIRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQIYRM 341 Query: 332 QSNGSD---QKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 ++G + +R++ + SY P SP G +A+ +G F + + L Sbjct: 342 PASGEEGGGAQRVT--FKGSYNVSPRISPDGKYLAYISRAG-GFKLQLQDLTNGDVTSLT 398 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFM 446 + +N +AP+++ +G+ ++++ + G + L ++ +GR +++ + +P W FM Sbjct: 399 DTANDEAPSFAANGKYILYATRVGGR--AVLAAVSTDGRTRQVLSLQSGDVREPSWGPFM 456 >gi|197284481|ref|YP_002150353.1| translocation protein TolB [Proteus mirabilis HI4320] gi|194681968|emb|CAR41400.1| TolB protein [Proteus mirabilis HI4320] Length = 432 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 209/450 (46%), Gaps = 27/450 (6%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGG 63 + + LN+ L +L V T +A V++ T N + P+ + K+ ++ Sbjct: 1 MMKQALNVIFGLLILCVT------TLANAEVRIEITQGVNTARPIGVVPFKWEGTGQMPE 54 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQK-ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 ++ V++ DL+ S FN I + Q+ +T + P W +LG +V GRV Sbjct: 55 DIAGVIAADLRNSGKFNPIDMNRLPQQPVTASEVQPAL--WTALGIDSVVVGRVQPSADG 112 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 + V ++L DV ++ + + W R AHT SD+I++ +TG +G F +RI +V Sbjct: 113 QYVVSYQLVDVAGSPGAVLAQSEYKISNKWLRYAAHTASDEIFEKLTGIRGAFRTRIAYV 172 Query: 181 SESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDIL 237 VV+ G L V D DG N + S Q L P +SP+ K+AY T++ + L Sbjct: 173 ---VVTNGGAYPYELRVSDYDGFNQDRVYRS-SQPLMSPAWSPDGAKLAYVTFESGQSAL 228 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + T R +I +F AP FS +G + ++ K ++++Y +DL S ++ Sbjct: 229 VVQTLATGEVR---QIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLASGNMTQV 285 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN N ++ PD +V+ SD+ G+ Q+Y + NG +RI+ + + + +P SP Sbjct: 286 TNGRSNNTEPTWMPDGQTLVYTSDQGGRPQIYKININGGTPERITWEGKQNQ-NPAVSPD 344 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + + I + + + L + + P+ +P+G +I+S + T + Sbjct: 345 GSFLVMVSSESGRQHIAKQDLETNAVQYLTDTFLDETPSIAPNGTMVIYSSTQGLGTILR 404 Query: 418 LYSIDLNGR-NETLINTPAYASDPQWVGFM 446 L S D GR L T P W FM Sbjct: 405 LVSTD--GRFKARLPATDGQVKSPAWSPFM 432 >gi|329893685|ref|ZP_08269819.1| tolB protein precursor [gamma proteobacterium IMCC3088] gi|328923612|gb|EGG30924.1| tolB protein precursor [gamma proteobacterium IMCC3088] Length = 433 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 117/445 (26%), Positives = 204/445 (45%), Gaps = 27/445 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE----V 68 MK ++V + F A + + +P IA + F E G E V Sbjct: 1 MKAFFLSVVVSVATFLSPVARAELVIEITQGIDNPTVIAISPFAW--EGPGVAPEDVAFV 58 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + DL RS F +++++ + + I F+DW + AQ L+ GR+ G+ L +F Sbjct: 59 IQNDLYRSGQFAPVARENMLGTPSRDEDI-FFRDWRMVNAQYLLIGRL--SGEQTLTADF 115 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV + +I + R +AH I+D +Y ++TG G F +++L+V+ + + G Sbjct: 116 ALYDVNKQTLVIQGSEQAVRGEVRTLAHRIADRVYTALTGIPGAFATKLLYVAVTPIPGE 175 Query: 189 IKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--DILRVYLMDTR 245 L + D DGA R L SR+ IL P +SP+ ++AY +++ I R L Sbjct: 176 KDYYELTLADSDGARPRVLLASREPIL-APTWSPDATEIAYVSFETSRPAIFRQNLQTG- 233 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 A +++ FR + +P +S +GKR + + KD DIY +DL++ A ER+T I+ Sbjct: 234 ---AREQLTAFRGLNGSPSWSPDGKRMAMVLSKDGNPDIYVLDLETYALERITRHYDIDT 290 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ-GDLIAFT 364 ++ PD ++F SDR G+ Q+Y R++ E SY Q G + Sbjct: 291 EPTWMPDGKSLLFTSDRPGRPQIYRYDFVTGLTDRVTY--EGSYNARARVAQDGRNVVLV 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + I V+ + + L ++P+ +P+G ++++ K+ G S+D Sbjct: 349 HQQDGDYKIAVLDLETRRLTALTSTDLDESPSIAPNGSMVLYATKQAGRGILAAVSVDGG 408 Query: 425 GRNETLINTPAY---ASDPQWVGFM 446 R N PA +P W ++ Sbjct: 409 AR----FNLPARDGEVREPSWSPYL 429 >gi|295675612|ref|YP_003604136.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1002] gi|295435455|gb|ADG14625.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1002] Length = 430 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 110/447 (24%), Positives = 209/447 (46%), Gaps = 27/447 (6%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVATCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F + D+ ++ DS+ W + GA V G V + + V Sbjct: 59 TIVRQDLQRSGKFTNV--DAGSTPVSETDSV-DLGAWKAKGANAFVAGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V +S Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGNRGVFATRLSYVIKSGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R RI + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GR---RIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSID 286 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASY-FDPVWSPQGDL 360 +YSPD I F SDR G Q+Y M + G + +R++ SY P SP G Sbjct: 287 TEPTYSPDGQWIYFTSDRGGAPQIYKMPAQGESAGNAQRVT--FTGSYNTSPRVSPDGKE 344 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A+ G F + + G L + S+ ++P+++ +G+ ++++ + +G L + Sbjct: 345 LAYISRVGGGFKLYIQDLQGGTATGLTDTSHDESPSFAANGQYILYATQVNGR--GVLAA 402 Query: 421 IDLNGRNETLINTPAYA-SDPQWVGFM 446 + +GR +++ + +P W FM Sbjct: 403 VSTDGRTRQVLSVQGGSVREPSWGPFM 429 >gi|238026337|ref|YP_002910568.1| translocation protein TolB [Burkholderia glumae BGR1] gi|237875531|gb|ACR27864.1| Putative TolB protein [Burkholderia glumae BGR1] Length = 430 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 117/426 (27%), Positives = 199/426 (46%), Gaps = 24/426 (5%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 ++ +A V V + IA FV+ L V+ VV DL R+ F+ I D+ Sbjct: 19 SAANAQVNVLITGVGSTQFPIATANFVNEAGLPQSVTAVVRADLARTGKFSNI--DAGST 76 Query: 90 KITNPDSIP-RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 I+ +S P + W + GA LV G V +E +++V+F L+D ++ + G ++ Sbjct: 77 PIS--ESAPVDYSAWKAKGANALVAGTVNREANGQVKVDFMLFDTVKQQSLGGLSLTATG 134 Query: 149 --ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN-IRY 205 RK H I+D IYQ + G +G F++R+ +V+ S K L + D DG N I Sbjct: 135 DVEGMRKTGHKIADFIYQKLLGVRGVFSTRLSYVTHSGG----KYRLLISDSDGENAIPA 190 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT S + + P +SP+ KVAY +++ + VY+ D R I N + AP + Sbjct: 191 LTSS--EPIISPAWSPSGTKVAYVSFELRKPV-VYIHDLPTGRR-YVISNQKGNNSAPAW 246 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + +G+ +++ IYSV RLT + I+ YSPD I F SDR G+ Sbjct: 247 APDGQTLAVALSLTGNTQIYSVSATGTGLRRLTQSSSIDTEPFYSPDGRWIYFTSDRGGQ 306 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 Q+Y M + G + ++ P SP G L+A+ +G F + V Sbjct: 307 PQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRTGGGFKLYVQDLQTGAA 366 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA---SDP 440 + ++ ++P+++ +G+ ++++ + G S L ++ +G + I P S+P Sbjct: 367 NAVTNTTHDESPSFAANGQYILYATRAGGR--SVLAAVPSDGSSPPQI-LPVQGGSFSEP 423 Query: 441 QWVGFM 446 W FM Sbjct: 424 SWGPFM 429 >gi|146329411|ref|YP_001210056.1| TolB protein [Dichelobacter nodosus VCS1703A] gi|146232881|gb|ABQ13859.1| TolB protein [Dichelobacter nodosus VCS1703A] Length = 424 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 103/383 (26%), Positives = 183/383 (47%), Gaps = 13/383 (3%) Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G K+ +++ DL ++ +F ++ + + + +P I + +++ LGA + GR + Sbjct: 47 GVKMEFIIASDLHKTGLFQPVAPEQIRNRPNSPAEI-DYAEFSGLGASYVALGRTLDANG 105 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 +F L V ++K I ++ S A R AH +D I Q +TG +G F+S++ +V Sbjct: 106 SS--AQFVLTQVANKKVIFNEQVSSVDA--RATAHLAADLILQRLTGVQGAFSSKVAYVL 161 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E + SL + D DGAN R + S + P +S + +++A+ TY L Sbjct: 162 EQANAKGRLYSLIISDFDGAN-RQVVYSSAMPIVSPSWSRDGRQIAFMTYARN---HAQL 217 Query: 242 MDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNATERLTN 299 + + +R+ F +P +S G++ IS ++ MDIY +DL S A +R+TN Sbjct: 218 VIQDVASGSRRVVAEFEGTASSPSWSPEGRQLAISRADEQGNMDIYLLDLASGAQQRITN 277 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I+ +SPD I F SDR G Q+Y M +G + R S + SP G Sbjct: 278 HAAIDTEPEFSPDGRFIYFTSDRAGNPQIYRMDRSGGNVNRAVVGGNYSTSSEL-SPDGQ 336 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + T+ SG + IG+ + + L + T+SP+G+ ++++ + G T K+ Sbjct: 337 SMVLTRQSGGGYQIGLYQLGSGSFQALTNGRLDEGATFSPNGQMIMYTATEGGRTVIKMI 396 Query: 420 SIDLNGRNETLINTPAYASDPQW 442 ++ G +TL + DP W Sbjct: 397 NLK-GGVTQTLSDPSGRLRDPAW 418 >gi|227356659|ref|ZP_03841045.1| TolB protein [Proteus mirabilis ATCC 29906] gi|227163167|gb|EEI48098.1| TolB protein [Proteus mirabilis ATCC 29906] Length = 431 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 121/449 (26%), Positives = 209/449 (46%), Gaps = 27/449 (6%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGK 64 + + LN+ L +L V T +A V++ T N + P+ + K+ ++ Sbjct: 1 MKQALNVIFGLLILCVT------TLANAEVRIEITQGVNTARPIGVVPFKWEGTGQMPED 54 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQK-ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++ V++ DL+ S FN I + Q+ +T + P W +LG +V GRV + Sbjct: 55 IAGVIAADLRNSGKFNPIDMNRLPQQPVTASEVQPAL--WTALGIDSVVVGRVQPSADGQ 112 Query: 124 LRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L DV ++ + + W R AHT SD+I++ +TG +G F +RI +V Sbjct: 113 YVVSYQLVDVAGSPGAVLAQSEYKISNKWLRYAAHTASDEIFEKLTGIRGAFRTRIAYV- 171 Query: 182 ESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILR 238 VV+ G L V D DG N + S Q L P +SP+ K+AY T++ + L Sbjct: 172 --VVTNGGAYPYELRVSDYDGFNQDRVYRS-SQPLMSPAWSPDGAKLAYVTFESGQSALV 228 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 V + T R +I +F AP FS +G + ++ K ++++Y +DL S ++T Sbjct: 229 VQTLATGEVR---QIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLASGNMTQVT 285 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N N ++ PD +V+ SD+ G+ Q+Y + NG +RI+ + + + +P SP G Sbjct: 286 NGRSNNTEPTWMPDGQTLVYTSDQGGRPQIYKININGGTPERITWEGKQNQ-NPAVSPDG 344 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + I + + + L + + P+ +P+G +I+S + T +L Sbjct: 345 SFLVMVSSESGRQHIAKQDLETNAVQYLTDTFLDETPSIAPNGTMVIYSSTQGLGTILRL 404 Query: 419 YSIDLNGR-NETLINTPAYASDPQWVGFM 446 S D GR L T P W FM Sbjct: 405 VSTD--GRFKARLPATDGQVKSPAWSPFM 431 >gi|108760781|ref|YP_633893.1| tolB protein [Myxococcus xanthus DK 1622] gi|32699694|sp|Q84FF7|TOLB_MYXXA RecName: Full=Protein tolB; AltName: Full=Adventurous gliding motility protein W; Flags: Precursor gi|118574586|sp|Q1D0D0|TOLB_MYXXD RecName: Full=Protein tolB; Flags: Precursor gi|27804811|gb|AAO22855.1| adventurous gliding motility protein W [Myxococcus xanthus] gi|108464661|gb|ABF89846.1| tolB protein [Myxococcus xanthus DK 1622] Length = 431 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 115/407 (28%), Positives = 203/407 (49%), Gaps = 32/407 (7%) Query: 41 NSANYSPVSIA----FTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF---KQKITN 93 + AN+ P+ +A T+ L S DL S + ++ + F ++ Sbjct: 26 SGANFRPLPVAVPAPLTQNDGAKALVAPFDSAFSFDLTASGILQVLDRKGFTADAKEGMA 85 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWR 152 SI F W +GA+ LV + ++G LR E RL++V ++ + K +PA + Sbjct: 86 AASI-NFSRWADVGAEALVKVSLAQDGG-VLRGELRLFNVGTGREDL-KVSKDAPADNAS 142 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +AH ++D +Y+ T E F SRI +V ++ + + V D DG N R LT Sbjct: 143 LLAHRLADALYRHFTREPSPFLSRITYVRKAGTN----RDVYVADWDGGNARALTKGGIN 198 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 IL P S + +VA+ TY ++ +Y+ + K + + M FS +GKR Sbjct: 199 IL--PALSQDGSQVAFTTYR-KNRPDIYVQSPGGEA--KAVISGGQMATGAAFSPDGKRI 253 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDREGKEQLYVM 331 S+ + E+ +Y + + LT+T + +N S ++SPD +I F S+R G Q+Y+M Sbjct: 254 AYSLAEGESAQVYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVSNRGGSPQVYIM 313 Query: 332 QSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT----KFSGEKFAIGVMKKDGSQERLL 386 ++G+ +R++ + +Y P WSP+GDLI FT + + + F + V + G RL Sbjct: 314 NADGTGVRRLT--FQGNYNQTPDWSPRGDLIVFTARDERNAFDLFTVSV--ETGKVTRLT 369 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + + + P +SP+GR ++F+ ++G GS+LY + +G N+ + T Sbjct: 370 QDQGSNEEPAFSPNGRLIVFTSTRNG--GSQLYVMTADGNNQLPLRT 414 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 12/169 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD---TRIDRA 249 + V + DG+ R LT + + P +SP+ +++A+ + + +VY+M+ T + R Sbjct: 265 VYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVS-NRGGSPQVYIMNADGTGVRRL 323 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDE--AMDIYSVDLQSNATERLTNTLFINISA 307 + GN+ P +S G ++ +DE A D+++V +++ RLT N Sbjct: 324 TFQ-GNYNQT---PDWSPRGD-LIVFTARDERNAFDLFTVSVETGKVTRLTQDQGSNEEP 378 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 ++SP+ IVF S R G QLYVM ++G++Q + +K +Y P WSP Sbjct: 379 AFSPNGRLIVFTSTRNGGSQLYVMTADGNNQLPLRTEK-GTYQTPDWSP 426 >gi|262404182|ref|ZP_06080737.1| TolB protein precursor [Vibrio sp. RC586] gi|262349214|gb|EEY98352.1| TolB protein precursor [Vibrio sp. RC586] Length = 450 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 119/456 (26%), Positives = 213/456 (46%), Gaps = 36/456 (7%) Query: 17 LCLLLVLIG-GFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+LIG GF + A V T+ + + P++I K+ +L VS V++ DLQ Sbjct: 5 LIFVLMLIGTGFTNVANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS F+ + Q + + I F W SLG L+TG + + + + ++L D+ Sbjct: 65 RSGKFSPVPTSKMPQTPYSEEQI-DFGKWTSLGVDSLLTGTITQNAEGSYVISYQLVDIV 123 Query: 134 -------------KDRKQIIGK------KFFSSPAS-WRKIAHTISDDIYQSITGEKGDF 173 +D + ++ K K + PAS R+ AH I+D +Y+ +TGE+G F Sbjct: 124 RGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRLREYAHRIADLVYEELTGERGAF 183 Query: 174 NSRILFVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +R+ +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ Sbjct: 184 LTRVAYV---VVNDKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL + Sbjct: 240 QNGQA-EIYMMNIYSGQR-EKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLAT 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + +T+ N + PD ++F SDR GK Q+Y + + KR++ + Sbjct: 298 RRLKEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLTSGETKRLTWQGSQNLGG 357 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +P G + S F + + ++L + ++P+ +P+G +I+S + Sbjct: 358 QI-TPDGKFLVMVNRSDSGFNLAKQDLETGALQILTKTLLDESPSIAPNGGMVIYSSIYN 416 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + SID GR L T P W F+ Sbjct: 417 KANVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|32699701|sp|Q8DAM3|TOLB_VIBVU RecName: Full=Protein tolB; Flags: Precursor Length = 443 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 128/457 (28%), Positives = 209/457 (45%), Gaps = 46/457 (10%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 LLVL+ + A + T+ + + P++I K+ L +S VV+ DLQRS Sbjct: 3 LLVLLSSVTNVANAALELIITDGIDSARPIAIVPFKWQGTKALPVDISSVVASDLQRSGK 62 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV----- 133 F+ + Q N I F W +LG L+TG V + K + ++L DV Sbjct: 63 FSPVPTSKMPQTPYNESEI-NFDAWTNLGVDTLLTGSVTQNEKGEYVINYQLVDVVRGQL 121 Query: 134 --------KDRKQIIGKK--FFSSPAS-----WRKIAHTISDDIYQSITGEKGDFNSRIL 178 +D + ++ K F+ A+ R+ AH ISD IY+ +TGE+G F +RI Sbjct: 122 TSGQSRALEDGQLVLSKDHVLFNKVATITAPRMREYAHRISDLIYEQLTGERGAFLTRIA 181 Query: 179 FVSESVVSGIIK--NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED- 235 +V VV+ K L V D DG N R + S+ Q L P +SP+ +++AY ++ + Sbjct: 182 YV---VVNDKDKFPYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGRRLAYVSFQNGQA 237 Query: 236 ---ILRVYLMDT-RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +L +Y + ++ P+ G APRFS +GK+ I + K ++ IY++DLQ+ Sbjct: 238 EIFVLNIYTGEHEKLTSFPRHNG-------APRFSPDGKKLAIVLSKTGSLQIYTLDLQT 290 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY-VMQSNGSDQKRISQDKEASYF 350 ++T N + PD ++F SDR GK Q+Y V S+GS + Q + Sbjct: 291 RQLTQITRDRSNNTEPFWHPDGKSLIFTSDRGGKPQIYRVNLSDGSTSRLTWQGSQN--L 348 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 349 GGQITPDGRFLIMVNRSDSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIY 408 Query: 411 DGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 D + SID GR L T P W F+ Sbjct: 409 DKKNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 443 >gi|120599219|ref|YP_963793.1| translocation protein TolB [Shewanella sp. W3-18-1] gi|146292707|ref|YP_001183131.1| translocation protein TolB [Shewanella putrefaciens CN-32] gi|166988084|sp|A4Y5U9|TOLB_SHEPC RecName: Full=Protein tolB; Flags: Precursor gi|166988086|sp|A1RKP4|TOLB_SHESW RecName: Full=Protein tolB; Flags: Precursor gi|120559312|gb|ABM25239.1| TolB, N-terminal domain protein [Shewanella sp. W3-18-1] gi|145564397|gb|ABP75332.1| TolB, N-terminal domain protein [Shewanella putrefaciens CN-32] Length = 442 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/379 (27%), Positives = 188/379 (49%), Gaps = 28/379 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N ++ +FQ W S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGAVAQFQASAWGSVGAEALVLGSVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQSLKGAVSPTEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L + D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMIADYDGFNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK +++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAVTLSKDGQPEIYVI 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R GK QLY + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLLFTSERGGKPQLYRVDLASGKVTRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M + ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLNTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGR 426 G L ++ +GR Sbjct: 405 TTHQGK--QVLAAVSTDGR 421 >gi|319426011|gb|ADV54085.1| TonB biopolymer transport system periplasmic component, TolB [Shewanella putrefaciens 200] Length = 442 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/379 (27%), Positives = 188/379 (49%), Gaps = 28/379 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 +++VV DL RS F + + Q+ N ++ +FQ W S+GA+ LV G V G D Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQR--NIGAVAQFQASAWGSVGAEALVLGSVKPYGTD 111 Query: 123 RLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGE 169 + V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG Sbjct: 112 QYLVSFDLIDLVKAQNQSLKGPVSPTEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGI 171 Query: 170 KGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F +RI +V VV+ K L + D DG N + L S + L P +SP+ +++A Sbjct: 172 RGAFLTRISYV---VVNHTQKAPYQLMIADYDGFNEQMLLRSPEP-LMSPTWSPDGRRLA 227 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +++++ +++ D + ++ +F + AP FS +GK +++ KD +IY + Sbjct: 228 YVSFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPAFSPDGKSLAVTLSKDGQPEIYVI 285 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D+ + A +R+TN I+ S+ PD ++F S+R GK QLY + R + + E Sbjct: 286 DIATKAIKRITNHYAIDTEPSWYPDGKSLLFTSERGGKPQLYRVDLASGKVTRETFEGEW 345 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + +P G + F + KF I M + ++L ++P+ +P+G +I+ Sbjct: 346 NLGGSI-TPDGRSMIFVNRTNGKFNIARMDLNTRFMQVLTSTRLDESPSVAPNGTMVIYG 404 Query: 408 RKKDGDTGSKLYSIDLNGR 426 G L ++ +GR Sbjct: 405 TTHQGK--QVLAAVSTDGR 421 >gi|91781923|ref|YP_557129.1| translocation protein TolB [Burkholderia xenovorans LB400] gi|118574575|sp|Q145B2|TOLB_BURXL RecName: Full=Protein tolB; Flags: Precursor gi|91685877|gb|ABE29077.1| Putative periplasmic TolB protein [Burkholderia xenovorans LB400] Length = 430 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 105/445 (23%), Positives = 208/445 (46%), Gaps = 23/445 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I D+ ++ DS+ W + GA V+G V + + V Sbjct: 59 TIVRQDLQRSGKFTNI--DAGATPVSETDSV-DLGSWKAKGANAFVSGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R RI + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GR---RIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSID 286 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 +SPD I F SDR G+ Q+Y M + G + + ++ P SP G +A Sbjct: 287 TEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNTSPRVSPDGKQLA 346 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + G F + + G+ L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 347 YISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVS 404 Query: 423 LNGRNETLINTPAYA-SDPQWVGFM 446 +GR +++ + +P W FM Sbjct: 405 TDGRTRQVLSVQGGSVREPSWGPFM 429 >gi|296162180|ref|ZP_06844976.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. Ch1-1] gi|295887566|gb|EFG67388.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. Ch1-1] Length = 430 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 105/445 (23%), Positives = 208/445 (46%), Gaps = 23/445 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I D+ ++ DS+ W + GA V+G V + + V Sbjct: 59 TIVRQDLQRSGKFTNI--DAGSTPVSETDSV-DLGSWKAKGANAFVSGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R RI + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GR---RIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSID 286 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 +SPD I F SDR G+ Q+Y M + G + + ++ P SP G +A Sbjct: 287 TEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNTSPRVSPDGKQLA 346 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + G F + + G+ L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 347 YISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVS 404 Query: 423 LNGRNETLINTPAYA-SDPQWVGFM 446 +GR +++ + +P W FM Sbjct: 405 TDGRTRQVLSVQGGSVREPSWGPFM 429 >gi|312882597|ref|ZP_07742337.1| translocation protein TolB [Vibrio caribbenthicus ATCC BAA-2122] gi|309369757|gb|EFP97269.1| translocation protein TolB [Vibrio caribbenthicus ATCC BAA-2122] Length = 454 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 127/474 (26%), Positives = 213/474 (44%), Gaps = 58/474 (12%) Query: 11 LNMK---INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK--- 64 +N+K I L LLVL F + A +++ S IA F G K Sbjct: 1 MNIKRKIIQLFGLLVLFQSF---AASAKLEIVITDGIDSARPIAILPFKWEGSAGQKPDN 57 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP--RFQDWNSLGAQVLVTGRV-IKEGK 121 +SEV+S DL RS F + Q P S+ F +W LG LVTG V K Sbjct: 58 LSEVISSDLMRSGKFKPLD---VSQMPETPYSVSDINFSEWTKLGVDALVTGTVGFDATK 114 Query: 122 DRLRVEFRLWDVKDRKQI----------------------IGKKFFSSPASWRKIAHTIS 159 R + ++L D+ R Q+ + K+ ++ A R +AH IS Sbjct: 115 QRYVINYQLVDIV-RGQLTNGQAKSLSSDGELVLSQDYVLLNKRMTATSAQMRAVAHRIS 173 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQI 213 + IY+ +TGEKG F +RI +V ++K+ L V D DG N + + SR Q Sbjct: 174 NRIYEQLTGEKGAFETRIAYV-------VVKDGDSYPYQLRVSDYDGFNEKLVLSSR-QP 225 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L P +SP+ +++AY ++ + +Y+MD + K + ++ AP+FS +GK+ Sbjct: 226 LMSPSWSPDGKQLAYVSFQNNKA-EIYIMDIYTGKREK-VTSYPRHNGAPKFSPDGKKLA 283 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + K + +Y++D+ + ++TN+ N + PD ++F SDR GK Q+Y + Sbjct: 284 LVLSKTGNLQVYTLDIATKRLTQITNSRSNNTEPFWYPDGKSLIFTSDRGGKPQIYNVDL 343 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 + KR++ + + + +P G I S F + + + + ++L + Sbjct: 344 ATNATKRLTWEGSQNLGGQI-TPDGRFIVMVNRSQSGFNLAKLDLETNSMQILTHTQLDE 402 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +P+ SP+G +I+S + + SID GR L T P W F+ Sbjct: 403 SPSISPNGGMVIYSSIYNQTNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 454 >gi|254787335|ref|YP_003074764.1| translocation protein TolB [Teredinibacter turnerae T7901] gi|237684356|gb|ACR11620.1| Tol-Pal system beta propeller repeat protein TolB [Teredinibacter turnerae T7901] Length = 431 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 188/376 (50%), Gaps = 26/376 (6%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF------NLISQDSFKQKITNPDSIPR 99 +P IA F +L + ++VS DL RS F +++S S +Q I Sbjct: 32 NPTPIAIVPFSGSGDLPENIQQIVSSDLLRSGFFRPLAPSDMLSLPSRQQDIF------- 84 Query: 100 FQDWNSLGAQVLVTGRVIKEG---KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 ++DW LG + LV G+V + D V+F+L+DV ++ ++ K S A R IAH Sbjct: 85 YRDWRILGVEYLVIGQVREAAVGAADDYIVDFQLYDVLGQRNVMQKTITGSVAELRDIAH 144 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ISD +YQ++TG +G F+++IL++ + G + L D DGA + L + + +L Sbjct: 145 EISDVLYQTLTGIRGAFSTKILYIEDLRREGAGRYRLVKADADGAREKVLFTTSEPLL-S 203 Query: 217 PRFSPNQQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +S + +VAY +++ I R L+ +++ NF+ + AP +S + + + Sbjct: 204 PTWSNDMTQVAYVSFETGRPAIFRQNLLTG----VREQLTNFKGLNGAPAWSPDDSKLAM 259 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD ++Y++D+ S R+TN I+ +++ D ++F S+R G Q+Y + Sbjct: 260 VLSKDGNPELYTLDIASKKLTRVTNHFAIDTEPNWTADGKGLIFTSNRGGNPQIYQVGLE 319 Query: 335 GSDQKRISQDKEASYFDPVWSPQG-DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +R++ + + + P +P G L+ ++ G F I R+L E + Sbjct: 320 TGRVERLTFEGDYNA-RPRVTPDGKSLVMVHRYKG-VFHIAWQDIASGDMRILTETWLDE 377 Query: 394 APTWSPSGRSLIFSRK 409 +P+ +P+G L+++ K Sbjct: 378 SPSIAPNGAMLLYATK 393 >gi|71065810|ref|YP_264537.1| TolB periplasmic receptor [Psychrobacter arcticus 273-4] gi|71038795|gb|AAZ19103.1| probable TolB periplasmic receptor [Psychrobacter arcticus 273-4] Length = 430 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 191/404 (47%), Gaps = 29/404 (7%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 +AF F L S ++ DL ++++ + SQ+ +Q ++ + W S+G Sbjct: 44 VAFVPFAGDSVL----SPIIVNDLSKTEL-KITSQNLPQQPRSSSELSGTLPVWQSMGIP 98 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS---PASWRKIAHTISDDIYQSI 166 LV G + + ++ ++ + +VK + I GK+ ++ S R H I+D +Y+ I Sbjct: 99 YLVVGST-RSSRGKVVTDYEVIEVKTGRVIEGKQTLTTDNNKDSMRYAGHVIADKVYELI 157 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNS-LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 TG GDF+ RI ++ E + +G K S L +MD DG N + +T I F P +SP+ + Sbjct: 158 TGIPGDFSGRIAYIEE-IGAGKAKVSRLKIMDADGENAKTITEVSGSI-FSPAWSPDGNR 215 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AYA D+ +Y+ A + F L+P FS +G + L S + + DIY Sbjct: 216 IAYAVQRDKSYPVIYVQSVSGGGA-TPLTPFPGSNLSPSFSPDGSKILFSSSFEGSADIY 274 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQ 343 + RLTN + SY+PD VF SD+ G K Q+Y + ++S Sbjct: 275 EMSASGGQPRRLTNWPSSEVQPSYAPDGRSFVFVSDKAGFNKPQIYRYEFGSGRTTKVSN 334 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 A+ P +S G IAF +G AI M G+ L +AP++SP+G+ Sbjct: 335 SGYAT--SPQFSSDGSQIAF--LNGRSAAI--MNSGGAVTANLGNTGIDEAPSFSPNGKR 388 Query: 404 LIFSRKKDGDTGSKLYSIDLNG------RNETLINTPAYASDPQ 441 ++++ K+ G L LNG + +I +P +++ P+ Sbjct: 389 VVYASKQGGK--GVLTIKSLNGGEAFGKSGQGVIRSPVWSASPR 430 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD ++I + R+ + +QS S P +SP G I F+ Sbjct: 206 SPAWSPDGNRIAYAVQRDKSYPVIYVQSVSGGGATPLTPFPGSNLSPSFSPDGSKILFSS 265 Query: 366 FSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I M G Q R L S +Q P+++P GRS +F K G ++Y + Sbjct: 266 SFEGSADIYEMSASGGQPRRLTNWPSSEVQ-PSYAPDGRSFVFVSDKAGFNKPQIYRYEF 324 Query: 424 NGRNETLINTPAYASDPQW 442 T ++ YA+ PQ+ Sbjct: 325 GSGRTTKVSNSGYATSPQF 343 >gi|119775221|ref|YP_927961.1| translocation protein TolB [Shewanella amazonensis SB2B] gi|166988080|sp|A1S7D5|TOLB_SHEAM RecName: Full=Protein tolB; Flags: Precursor gi|119767721|gb|ABM00292.1| tolB protein [Shewanella amazonensis SB2B] Length = 441 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 109/419 (26%), Positives = 200/419 (47%), Gaps = 36/419 (8%) Query: 50 IAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNS 105 IA FV + ++S+VV+ DL RS F + D+ + ++ F Q W Sbjct: 37 IAVVPFVWQGTGPVPSQISDVVASDLTRSGTFKPL--DALGLPQSGISTLAEFAPQKWTG 94 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS-------------SPASWR 152 + A+ V G + G D+ V F L D+ + Q+ G+ + + A +R Sbjct: 95 INAEAAVVGAIKPYGPDQYLVTFDLIDLL-KAQLAGQAPLNKQDLLLDSRQTVITAAQFR 153 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSR 210 + H ISD +Y+ +TG +G F +RI +V VV+ K L + D DG N L S Sbjct: 154 QYGHRISDVVYEKLTGIRGAFLTRIAYV---VVNHAEKAPYRLMIADYDGYNEHMLLRSP 210 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + L P +SP+ +++AY ++++ +++ D +A ++ +F + AP FS +GK Sbjct: 211 EP-LMSPAWSPDGRRLAYVSFENRKA-EIFVQDI-FTQARTKVSSFPGINGAPSFSPDGK 267 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 +++ KD +IY++D+ + T R+TN I+ S+ PD ++ S+R G+ QLY Sbjct: 268 TLAVTLSKDGQSEIYTIDIATKTTRRITNHYAIDTEPSWFPDGKSLLITSERGGRPQLYK 327 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 ++ + R++ D E + + +P G + F + KF I M + ++L Sbjct: 328 VELDSGKLTRLTFDGEWNLGGSI-TPDGRTLIFVNRTNGKFNIARMDLETRFMQVLTTTR 386 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 ++P+ +P+G +I+ G L ++ +GR + + PA + P W F+ Sbjct: 387 LDESPSVAPNGTMVIYGTTHQGR--QVLAAVSTDGRFKARL--PAGQGEVKSPSWSPFL 441 >gi|323496600|ref|ZP_08101653.1| translocation protein TolB [Vibrio sinaloensis DSM 21326] gi|323318346|gb|EGA71304.1| translocation protein TolB [Vibrio sinaloensis DSM 21326] Length = 439 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 109/427 (25%), Positives = 192/427 (44%), Gaps = 39/427 (9%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ +L VS +++ DLQRS F+ + Q N + F W L Sbjct: 25 PIAIVPFKWEGTSKLPQDVSAIIASDLQRSGKFSPVPTSKMPQTPYNETEV-NFDAWTGL 83 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV--------------KDRKQIIGKK--FFSSPAS 150 G L+TG + + + + ++L DV D + ++ K F+ A+ Sbjct: 84 GVDALLTGTITQNAEGNYVINYQLVDVIRGQLTQGQSKALSTDGQLVLSKDHVLFNKRAT 143 Query: 151 -----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 R+ AH ISD +YQ +TGE+G F +RI +V + L V D DG N R Sbjct: 144 VPGERLREYAHRISDLVYQELTGERGAFLTRIAYVVVNDKDKKYPYQLRVSDYDGYNERL 203 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMDT-RIDRAPKRIGNFRSMI 260 + S+ Q L P +SP+ QK+AY ++ + I+ +Y + ++ P+ G Sbjct: 204 VLRSK-QPLMSPAWSPDGQKLAYVSFQNGQAEIFIMNIYTGEQEKVTSYPRHNG------ 256 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 APRFS +G + + K ++ +Y++DL++ ++T N + PD ++F S Sbjct: 257 -APRFSPDGNTLALVLSKTGSLQVYTLDLKTRKLTQITRGRSNNTEPYWHPDGKSLIFTS 315 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G+ Q+Y +Q + KR++ + + +P G + S F + + Sbjct: 316 DRGGRPQIYQVQLANGETKRLTWQGSQNLGGQI-TPDGRFLVMVNRSNSGFNLAKQDLET 374 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASD 439 ++L + ++P+ +P+G +I+S + + SID GR L T Sbjct: 375 GAVQILTKTLLDESPSIAPNGGMVIYSSIYNKTNVLSMVSID--GRFKARLPATNGRVRA 432 Query: 440 PQWVGFM 446 P W F+ Sbjct: 433 PAWSPFL 439 >gi|300722397|ref|YP_003711683.1| hypothetical protein XNC1_1420 [Xenorhabdus nematophila ATCC 19061] gi|297628900|emb|CBJ89483.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Xenorhabdus nematophila ATCC 19061] Length = 439 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/426 (24%), Positives = 200/426 (46%), Gaps = 26/426 (6%) Query: 33 HAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 HA V++ + P+ + K+ + E+ + +++ DL+ S FN I Q+ Sbjct: 28 HAEVRIEITQGVDSARPIGVVPFKWTGVGEVPENIGSIIAADLRNSGKFNPIDPTRMPQQ 87 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPA 149 T + W++LG +V G + + V ++L D ++ + FS Sbjct: 88 PTTASEVTP-AAWSALGIDSVVVGHIQPSADGKFLVSYQLVDTAGAPGTVLAQDQFSIER 146 Query: 150 SWRKI-AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 W ++ AHT+SD +++ +TG KG F +RI ++ ++ L V D DG N + + Sbjct: 147 KWLRLSAHTVSDQVFEKLTGIKGAFRTRIAYIVKNTNGAKFPYELRVSDYDGYN-QSMVH 205 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + L P +SP+ K+AY T++ ++ T + + +F AP FS + Sbjct: 206 RSPEPLMSPAWSPDASKLAYVTFEGGS--SSLVIQTLATGTKREVASFPRHNGAPAFSPD 263 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + ++ K ++++Y +DL SN ++T+ N S+ PD+ +V+ SD+ G+ QL Sbjct: 264 GTKLAFALSKTGSLNLYVMDLASNQIRQVTDGRSNNTEPSWMPDNQTLVYTSDQGGRPQL 323 Query: 329 YVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQE 383 Y + NG +R+ SQ+++A SP G + + SG + + K+D + Sbjct: 324 YKIDINGGAPERLTWEGSQNQDADV-----SPDGSFVVMVSSASGSQH---IAKQDLATG 375 Query: 384 RL-LVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDP 440 + ++ D+ L + P+ +P+G +I+S + T +L S D GR L T P Sbjct: 376 SVQILTDTFLDETPSIAPNGTMVIYSSTQGWGTILQLVSTD--GRFKARLPATDGQVKSP 433 Query: 441 QWVGFM 446 W ++ Sbjct: 434 AWSPYL 439 >gi|262276103|ref|ZP_06053912.1| TolB protein precursor [Grimontia hollisae CIP 101886] gi|262219911|gb|EEY71227.1| TolB protein precursor [Grimontia hollisae CIP 101886] Length = 450 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/424 (26%), Positives = 186/424 (43%), Gaps = 73/424 (17%) Query: 41 NSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF 100 NSA P++I K+ +L VS VV+ DLQRS F+ I D Q N D+ F Sbjct: 33 NSAR--PIAIVPFKWEGEGKLPTDVSAVVASDLQRSGKFSPIPTDKMPQTPYN-DTEVDF 89 Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS---------- 150 DW ++G LVTG V + ++E++L D+ R Q+ G + AS Sbjct: 90 NDWTAIGVDALVTGTVKPAAGGKYQIEYQLIDIV-RGQLTGGQSKGLSASGELVITKDHL 148 Query: 151 ------------WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 RK+AH I+D IY+ +TGEKG F +RI +V S L + D Sbjct: 149 LIHSRHTVGQEALRKLAHLIADRIYEKLTGEKGAFLTRIAYVVIDEKSDH-PYQLRISDY 207 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N + S Q L P +SP+ +++AY ++++ +++L + + I +F Sbjct: 208 DGYN-EHRVLSSTQPLMSPSWSPDGKQLAYVSFENGQA-QIFLTNIYTGER-QMISSFPR 264 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 +PRFS +G + + + K ++ IY +DL + E++T N ++PD ++F Sbjct: 265 HNGSPRFSPDGSKLAMVLSKTGSLQIYVMDLNTRQLEQITKGRANNTEPFWAPDGQSLIF 324 Query: 319 ESDREGKEQLYVMQSNGSDQKRIS--------------------------------QDKE 346 SDR GK Q+Y + + RI+ QD + Sbjct: 325 TSDRGGKPQIYRVNLSDGSTNRITWQGSQNLGGQLTPDGRYLVMVHRSDSGYNIAKQDLQ 384 Query: 347 ASYFD----------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAP 395 + P +P G ++ ++ G + ++ DG + RL + ++AP Sbjct: 385 TGAVEILTKTMLDESPSLAPNGSMVIYSSVYGRSNVLSMVSIDGRFKARLPATNGRVRAP 444 Query: 396 TWSP 399 WSP Sbjct: 445 AWSP 448 >gi|114562639|ref|YP_750152.1| TolB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|122941016|sp|Q084K1|TOLB_SHEFN RecName: Full=Protein tolB; Flags: Precursor gi|114333932|gb|ABI71314.1| TolB, N-terminal domain protein [Shewanella frigidimarina NCIMB 400] Length = 442 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/432 (25%), Positives = 197/432 (45%), Gaps = 34/432 (7%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDL 73 NL L L+ T A + + + IA FV +S+VV+ DL Sbjct: 3 NLAKWLTLVLIVLTTPARAALDIVITEGVDAARPIAVVPFVWQGQGPAPASISDVVASDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + + Q + + Q+W ++ A+ LV G V G D+ V F L D+ Sbjct: 63 SRSGTFKTLDVRALPQSTISSVNGFTAQNWANVEAEALVVGTVKPYGADQYLVSFELIDL 122 Query: 134 KDRKQIIGK-------------KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + GK + S +R+ +H ISD +Y+ +TG +G F +RI +V Sbjct: 123 VKAQLQAGKGPQNNNELLLESRETVISANQFRQYSHRISDIVYEKLTGIRGAFLTRIAYV 182 Query: 181 SESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 ++K L + D DG N + L S + L P +SP+ +++AY ++++ Sbjct: 183 -------VVKQGQKAPYHLMIADYDGYNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENR 234 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +++ D + + +F + AP FS +GK+ +++ KD +IY VD+ + AT Sbjct: 235 KA-EIFVQDI-YSQTRTLVSSFDGINGAPAFSPDGKKLAVTLSKDGQPEIYVVDIATKAT 292 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 R+T I+ S+ PD I+F S+R GK QLY + + + R++ + E + + Sbjct: 293 RRITEHYAIDTEPSWFPDGKSILFTSERGGKPQLYRVSLDTNKVSRMTFEGEWNLGGSI- 351 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 352 SPDGRSMIFVNRTNGKFHIARMDLATRFMQVLSSTQLDESPSVAPNGTMVIYGTTHQGK- 410 Query: 415 GSKLYSIDLNGR 426 L ++ ++GR Sbjct: 411 -QVLAAVSMDGR 421 >gi|56460188|ref|YP_155469.1| translocation protein TolB [Idiomarina loihiensis L2TR] gi|67461918|sp|Q5QYU0|TOLB_IDILO RecName: Full=Protein tolB; Flags: Precursor gi|56179198|gb|AAV81920.1| Periplasmic component of the Tol biopolymer transport system [Idiomarina loihiensis L2TR] Length = 449 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 115/457 (25%), Positives = 210/457 (45%), Gaps = 32/457 (7%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 N+ I LL V + F + V + P+++ ++ + ++++V++ Sbjct: 3 NILIRSILLFVALTAFVRAGVLEIV-ITEGIDTARPIAVVPFQWKGEGKAPNELTDVIAA 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS FN I + Q+ D I + W +G + ++ G + DR V+F + Sbjct: 62 DLMRSGKFNPIPVSAMPQRPAADDEI-DYSAWAKMGVEAILVGSIEPYSVDRYMVKFEVI 120 Query: 132 DVKDRKQIIGK---------------KFFSSPAS------WRKIAHTISDDIYQSITGEK 170 DV R QI G S +S +R AH ISD Y+++TGE+ Sbjct: 121 DVL-RGQITGGNSQMLRNGELVQSNDHVLDSRSSVIDGDQFRSYAHRISDVAYEALTGER 179 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F ++I +V+ + L V D DGAN + L S + L P +SP+ K+AY + Sbjct: 180 GAFMTKIAYVTVNH-DDRYPYKLAVADYDGANEKILLRSPEP-LMSPAWSPDGNKLAYVS 237 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++++ +++ D R +++ +F + P FS +GK+ + + KD ++Y D++ Sbjct: 238 FENK-TAEIFMQDIYTTRR-EKLTSFPGINGNPVFSPDGKKLAMVLSKDGNPELYVFDIK 295 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + +R+T I+ +++PD +VF S+R G+ QLY + + +R++ D E + Sbjct: 296 TKDLQRVTRNRTIDTEPNWTPDGESLVFTSERGGRPQLYSVNLSSGQVRRLTFDGEQNLG 355 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + D+I + G + I + ++L + S ++P+ +P+G +I+S Sbjct: 356 GTLVPSGEDMILVNRTRG-NYHIAKQEFPRGNMQVLTKTSLDESPSVAPNGSMVIYSTTH 414 Query: 411 DGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + L SID GR L T P W FM Sbjct: 415 NNKQVLALVSID--GRFKARLPATDGEIKSPAWSPFM 449 >gi|90022174|ref|YP_528001.1| translocation protein TolB [Saccharophagus degradans 2-40] gi|119371059|sp|Q21HP0|TOLB_SACD2 RecName: Full=Protein tolB; Flags: Precursor gi|89951774|gb|ABD81789.1| TolB-like protein [Saccharophagus degradans 2-40] Length = 445 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 109/416 (26%), Positives = 199/416 (47%), Gaps = 28/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L+L+L G + +++ + N P IA F L VS ++S DL RS Sbjct: 24 LSLMLILAAGMARAEL--VIEITQGADN--PTPIAVVPFGGNGGLSENVSRIISADLDRS 79 Query: 77 DVF------NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +F N++S S + I ++DW LG LV G I+ + E+ L Sbjct: 80 GLFESKSPENMLSFPSKQADIF-------YRDWRILGTDYLVIGD-IQRSESGYVAEYGL 131 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV +K+++GK P R +AH ISDD+YQ++TG +G F+++IL++ + S + Sbjct: 132 YDVLQQKKMLGKVLSVGPTGLRDMAHKISDDVYQALTGIRGAFSTKILYIEDMGPSVKER 191 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--DILRVYLMDTRIDR 248 L D DGA + + S + +L P +S + +VAY +++ I R L+ + + Sbjct: 192 YRLIKADADGAREQLIFKSSEPLL-SPAWSNDLTQVAYVSFETSRPAIFRHNLITGKRE- 249 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT--LFINIS 306 ++ NF+ + AP +S + + + + KD +IY +D+ + A +R+T T I+ Sbjct: 250 ---QLTNFKGLNGAPAWSPDDSKLALVLSKDGNPEIYILDIATRALQRVTKTHSAVIDTE 306 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++ D I+F S+R G Q+Y + +R++ + + + P +P G + Sbjct: 307 PNWTADGKGIIFTSNRGGNPQIYQVGLATGRVERLTFEGDYNA-RPRVTPDGKSLVMVHR 365 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 F I R+L E ++P+ +P+G L+++ + + SID Sbjct: 366 EDGVFHIAWQDIQSGDMRILTETWLDESPSIAPNGAMLLYATQHNNKGVLAAVSID 421 >gi|261252510|ref|ZP_05945083.1| TolB protein precursor [Vibrio orientalis CIP 102891] gi|260935901|gb|EEX91890.1| TolB protein precursor [Vibrio orientalis CIP 102891] Length = 438 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 122/449 (27%), Positives = 204/449 (45%), Gaps = 45/449 (10%) Query: 28 FPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 F T+ A V T+ + + P++I K+ +L VS+V++ DLQRS F+ I+ Sbjct: 5 FQTANAALELVITDGIDSARPIAIVPFKWEGNSQLPEDVSKVIASDLQRSGKFSPIATSK 64 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV------------- 133 Q N + F W LG LVTG + + + + ++L DV Sbjct: 65 MPQTPYNETEV-DFGAWTGLGVDALVTGSISQNAEGNYVINYQLVDVVRGQLTQGQSKAL 123 Query: 134 KDRKQIIGKK---FFSSPAS-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 D Q++ K F+ A+ R+ AH ISD +Y+++TGEKG F +RI +V VV Sbjct: 124 SDDGQLVLSKDHVMFNKRATVPGDRLREYAHRISDLVYEALTGEKGAFLTRIAYV---VV 180 Query: 186 SGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRV 239 S L V D DG N R + S+ Q L P +SP+ +K+AY ++ + I+ + Sbjct: 181 SDKDQFPYQLRVSDYDGHNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNI 239 Query: 240 YLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 Y + +I P+ G APRFS +G + + + K ++ +Y++DL++ ++T Sbjct: 240 YTGEREKISSYPRHNG-------APRFSPDGSKLALVLSKTGSLQVYTLDLKTRKLTQIT 292 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N + PD +VF SDR GK Q+Y + RI+ + + +P G Sbjct: 293 RGRSNNTEPFWHPDGKSLVFTSDRGGKPQIYQVDLANGSTSRITWQGSQNLGGQI-TPDG 351 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + S F + + + + L + ++P+ +P+G +I+S + + Sbjct: 352 RFLVMVNRSNSGFNLAKLDLETGAMQTLTKTLLDESPSIAPNGGMVIYSSTYNKSNVLSM 411 Query: 419 YSIDLNGR-NETLINTPAYASDPQWVGFM 446 SID GR L T P W F+ Sbjct: 412 VSID--GRFKARLPVTNGRVRAPAWSPFL 438 >gi|90408530|ref|ZP_01216687.1| TolB protein [Psychromonas sp. CNPT3] gi|90310349|gb|EAS38477.1| TolB protein [Psychromonas sp. CNPT3] Length = 437 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 107/436 (24%), Positives = 211/436 (48%), Gaps = 30/436 (6%) Query: 30 TSIHAFVKV------ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS 83 S AF ++ NSA P+++ K++ E ++ ++ DL+ S VF I+ Sbjct: 14 CSTQAFARLDILITEGVNSAR--PIAVIPFKWLGTGEKPQDIARIIGNDLRSSGVFRPIA 71 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK-DRLRVEFRLWDV-------KD 135 D + +++ + W+ +G + +V G + + + + + L +V K Sbjct: 72 IDKMPSTPSRSETL-DYALWHKMGVEAIVMGEIKPASEPGKYTITYELLNVLTGNMSIKG 130 Query: 136 RKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 ++ K+ + S +R AH ISD +Y+ +TGE+G F +RI +++ S L Sbjct: 131 LSPVLEKRRSTLSATQFRHFAHRISDVVYEKLTGERGAFLTRIAYIAVDHRSSH-PYQLR 189 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D DG + + S+ I+ P +SP+ +K+ Y +++ + ++Y+ D + + + Sbjct: 190 IADYDGYAEKLILRSKQPIM-SPAWSPDGRKLVYVSFEKKKS-QIYIQDIYTQKR-ELMT 246 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + AP +S +GK + KD +IY++++ S A +R+T I+ S+SPD Sbjct: 247 SFPRINGAPSWSPDGKMLSFVLSKDGQAEIYTMNVMSKALKRITQNRVIDTEPSWSPDGK 306 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++F S+R G+ Q+Y + + KR++ + + + + +P GD + S ++ I Sbjct: 307 SLLFTSERGGRPQIYQVDLSSMQTKRMTWEGDMNLGGTI-TPDGDSLVLVSRSNGQYKIS 365 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 V + R L + ++P+ +P+G +I+S G G L S+D GR + N P Sbjct: 366 VQDIASGELRTLTKTQLDESPSVAPNGSMIIYSTVYQGHKGLALVSMD--GRFKA--NIP 421 Query: 435 AYASD---PQWVGFMD 447 A D P W F++ Sbjct: 422 AINGDVKSPAWSPFLN 437 >gi|326423958|ref|NP_761028.2| Tol-Pal system beta propeller repeat-containing protein TolB [Vibrio vulnificus CMCP6] gi|319999336|gb|AAO10555.2| Tol-Pal system beta propeller repeat protein TolB [Vibrio vulnificus CMCP6] Length = 449 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 121/428 (28%), Positives = 197/428 (46%), Gaps = 43/428 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ L +S VV+ DLQRS F+ + Q N I F W +L Sbjct: 37 PIAIVPFKWQGTKALPVDISSVVASDLQRSGKFSPVPTSKMPQTPYNESEI-NFDAWTNL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV-------------KDRKQIIGKK--FFSSPAS- 150 G L+TG V + K + ++L DV +D + ++ K F+ A+ Sbjct: 96 GVDTLLTGSVTQNEKGEYVINYQLVDVVRGQLTSGQSRALEDGQLVLSKDHVLFNKVATI 155 Query: 151 ----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK--NSLCVMDRDGANIR 204 R+ AH ISD IY+ +TGE+G F +RI +V VV+ K L V D DG N R Sbjct: 156 TAPRMREYAHRISDLIYEQLTGERGAFLTRIAYV---VVNDKDKFPYQLRVADYDGFNER 212 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMI 260 + S+ Q L P +SP+ +++AY ++ + +L +Y + +++ +F Sbjct: 213 LVLRSK-QPLMSPAWSPDGRRLAYVSFQNGQAEIFVLNIYTGEH------EKLTSFPRHN 265 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 APRFS +GK+ I + K ++ IY++DLQ+ ++T N + PD ++F S Sbjct: 266 GAPRFSPDGKKLAIVLSKTGSLQIYTLDLQTRQLTQITRDRSNNTEPFWHPDGKSLIFTS 325 Query: 321 DREGKEQLY-VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 DR GK Q+Y V S+GS + Q + +P G + S F + + Sbjct: 326 DRGGKPQIYRVNLSDGSTSRLTWQGSQN--LGGQITPDGRFLIMVNRSDSGFNLAKQDLE 383 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 ++L + ++P+ +P+G +I+S D + SID GR L T Sbjct: 384 TGAVQVLTKTLLDESPSIAPNGGMVIYSSIYDKKNVLSMVSID--GRFKARLPATNGRVR 441 Query: 439 DPQWVGFM 446 P W F+ Sbjct: 442 APAWSPFL 449 >gi|260768866|ref|ZP_05877800.1| TolB protein precursor [Vibrio furnissii CIP 102972] gi|260616896|gb|EEX42081.1| TolB protein precursor [Vibrio furnissii CIP 102972] Length = 450 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/454 (26%), Positives = 207/454 (45%), Gaps = 37/454 (8%) Query: 18 CLLLVLIG-GFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 CLL+V F ++ + NSA P++I K+ +L VS V++ DLQRS Sbjct: 9 CLLVVSSSVQFANAALELVITDGINSAR--PIAIVPFKWEGKTKLPQDVSGVIASDLQRS 66 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV--- 133 F+ I Q N + +F W S+G L+TG + + + ++L DV Sbjct: 67 GKFSPIPTSKMPQTPYNEADV-KFDAWTSIGVDALLTGSITQNADGNYVINYQLVDVVRG 125 Query: 134 -----------KDRKQIIGK------KFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNS 175 D + ++ K K + PA R+ AH I+D +Y+ +TGE+G F + Sbjct: 126 QLTQGQSRALSSDGQLVLSKDHVLFNKVATVPAKRMREYAHRIADLVYEELTGERGAFLT 185 Query: 176 RILFVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 RI +V VV+ L V D DG N R + S+ Q L P +SP+ +K+AY ++ + Sbjct: 186 RIAYV---VVNDKDAYPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQN 241 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +Y+M+ +++ ++ APRFS +GK + + K ++ +Y++DL S Sbjct: 242 GQA-EIYIMNIYTGER-EKVTSYPRHNGAPRFSPDGKTLALVLSKTGSLQVYTLDLTSRK 299 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 ++T+ N ++PD ++F SDR GK Q+Y + KR++ + + Sbjct: 300 LTQITSGRSNNTEPFWNPDGKSLIFTSDRGGKPQIYQVNLTDGATKRLTWQGSQNLGGQI 359 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 +P G + S F + + ++L + ++P+ +P+G +I+S + Sbjct: 360 -TPDGRFLVMVNRSNSGFNLAKQDLETGSVQILTKTLLDESPSIAPNGGMVIYSSIYNKA 418 Query: 414 TGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + SID GR L T P W F+ Sbjct: 419 NVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|153832465|ref|ZP_01985132.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio harveyi HY01] gi|148871260|gb|EDL70132.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio harveyi HY01] Length = 450 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 120/461 (26%), Positives = 205/461 (44%), Gaps = 47/461 (10%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L + VL+G + A V T+ + + P+++ K+ + L +S V++ DLQR Sbjct: 6 LLGMFVLLGSLTSVAHAALELVITDGIDSARPIAVVPFKWEGSEPLPTDISAVIASDLQR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F+ + Q N + F W LG L+TG + K + V ++L DV Sbjct: 66 SGKFSPVPTSKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNYVVNYQLVDVV- 123 Query: 136 RKQIIGKK-----------------FFSSPAS-----WRKIAHTISDDIYQSITGEKGDF 173 R Q+ G K F+ A+ R+ AH ISD +Y+ +TGE+G F Sbjct: 124 RGQLTGGKSKALGGDGELVLSKDHVLFNKVATVEGPRMREYAHRISDLVYEQLTGERGAF 183 Query: 174 NSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L V D DG N R + S+ Q L P +SP+ QK+AY ++ Sbjct: 184 MTRIAYV---VVNDKDNFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYVSF 239 Query: 232 DDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + I+ +Y + +I P+ G APRFS +G + + + K ++ +Y+ Sbjct: 240 QNGQAEIFIMNIYTGEREKITSYPRHNG-------APRFSPDGSQLALVLSKTGSLQVYT 292 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +DL++ ++T N + PD ++F SDR GK Q+Y + R++ Sbjct: 293 LDLKTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLGSGSTNRLTWQGS 352 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + +P G + S F + + ++L + ++P+ +P+G +I+ Sbjct: 353 QNLGGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVIY 411 Query: 407 SRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 S + + SID GR L T P W F+ Sbjct: 412 SSIYNKKNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|94311607|ref|YP_584817.1| translocation protein TolB [Cupriavidus metallidurans CH34] gi|119371053|sp|Q1LJX8|TOLB_RALME RecName: Full=Protein tolB; Flags: Precursor gi|93355459|gb|ABF09548.1| periplasmic protein [Cupriavidus metallidurans CH34] Length = 446 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 172/351 (49%), Gaps = 21/351 (5%) Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDI 162 W + GA V G V + V FRL+D + + G F + R AH I+D I Sbjct: 109 WKAKGADAFVAGSVTPTSNGQYEVRFRLYDTAKGQSLGGLAFTVTQGQLRVTAHKIADYI 168 Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFS 220 Y+ + GE+G F +R+ +VS+ + N L + D DG N + S + I+ P +S Sbjct: 169 YEKLLGERGVFATRLSYVSK------VGNRYQLLISDSDGQNAQIALTSTEPII-SPAWS 221 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRALISVQK 278 P+ ++VAY +++ + + VY+ D KR+ N + AP +S +G+ +S+ + Sbjct: 222 PDGRRVAYVSFEAKKPV-VYVHDLATG---KRVVVSNQKGNNSAPSWSPDGQHLAVSLSR 277 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D IY V+ + RLT + I+ +SPD I F SDR G Q+Y M ++G + Sbjct: 278 DGNTQIYQVNADGSGLRRLTRSSAIDTEPQFSPDGRSIYFTSDRGGAPQIYRMPASGEES 337 Query: 339 KRISQDK-EASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 + + SY P SP G +A+ SG F + + L + +N ++P+ Sbjct: 338 GAAQRVTFKGSYNVSPRISPDGKYLAYISRSG-GFRLQLQDLSNGDVTSLTDTTNDESPS 396 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQWVGFM 446 ++ +G+ ++++ + G S L ++ +GR + +++ + A +P W FM Sbjct: 397 FAANGKYILYATRVGGR--SVLAAVSTDGRTKQVLSLQSGAVREPSWGPFM 445 >gi|327393166|dbj|BAK10588.1| protein TolB precursor [Pantoea ananatis AJ13355] Length = 431 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 103/420 (24%), Positives = 198/420 (47%), Gaps = 20/420 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L ++L + + NSA P+ + K+ + +V+ D Sbjct: 5 LRVTLGFFILLWAAVLHAEVRIEITQGVNSAR--PIGVVPFKWAGPGAAPEDIGGIVAAD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN + + Q+ T+ + + W++LG +V G++ +V ++L D Sbjct: 63 LRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQIQPNADGSYQVSYQLVD 121 Query: 133 VKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + + W R AHT+SD+ +Q +TG KG F +RI +V ++ G Sbjct: 122 TAGAPGTVLAQNSYKITKQWLRYAAHTVSDEAFQKLTGIKGAFRTRIAYVVQTN-GGQFP 180 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + A Sbjct: 181 YELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLSNGAV 237 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ + + ++ Sbjct: 238 RQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPTWF 297 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PDS + + SD+ G Q+Y + NG +RI+ + + V S ++ + G + Sbjct: 298 PDSQTLAYTSDQAGAPQIYKIGINGGSPQRITWEGAQNQDADVASDGKSMVMISTSGGAQ 357 Query: 371 FAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 V K+D G+ + L D+ L + P+ +P+G +I+S + GS L + +GR Sbjct: 358 H---VAKQDLVTGAVQTL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVSTDGR 410 >gi|37680459|ref|NP_935068.1| translocation protein TolB [Vibrio vulnificus YJ016] gi|320155882|ref|YP_004188261.1| TolB protein , periplasmic protein involved in the tonb-independent uptake of group A colicins [Vibrio vulnificus MO6-24/O] gi|67461993|sp|Q7MJ87|TOLB_VIBVY RecName: Full=Protein tolB; Flags: Precursor gi|37199207|dbj|BAC95039.1| tol biopolymer transport system periplasmic component, TolB [Vibrio vulnificus YJ016] gi|319931194|gb|ADV86058.1| TolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Vibrio vulnificus MO6-24/O] Length = 449 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 121/428 (28%), Positives = 197/428 (46%), Gaps = 43/428 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ L +S VV+ DLQRS F+ + Q N I F W +L Sbjct: 37 PIAIVPFKWQGTKALPVDISSVVASDLQRSGKFSPVPTSKMPQTPYNESEI-NFDAWTNL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV-------------KDRKQIIGKK--FFSSPAS- 150 G L+TG V + K + ++L DV +D + ++ K F+ A+ Sbjct: 96 GVDTLLTGSVTQNEKGEYVINYQLVDVVRGQLTSGQSRALEDGQLVLSKDHVLFNKVATI 155 Query: 151 ----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK--NSLCVMDRDGANIR 204 R+ AH ISD IY+ +TGE+G F +RI +V VV+ K L V D DG N R Sbjct: 156 TAPRMREYAHRISDLIYEQLTGERGAFLTRIAYV---VVNDKDKFPYQLRVADYDGFNER 212 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMI 260 + S+ Q L P +SP+ +++AY ++ + +L +Y + +++ +F Sbjct: 213 LVLRSK-QPLMSPAWSPDGRQLAYVSFQNGQAEIFVLNIYTGEH------EKLTSFPRHN 265 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 APRFS +GK+ I + K ++ IY++DLQ+ ++T N + PD ++F S Sbjct: 266 GAPRFSPDGKKLAIVLSKTGSLQIYTLDLQTRQLTQITRDRSNNTEPFWHPDGKSLIFTS 325 Query: 321 DREGKEQLY-VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 DR GK Q+Y V S+GS + Q + +P G + S F + + Sbjct: 326 DRGGKPQIYRVNLSDGSTSRLTWQGSQN--LGGQITPDGRFLIMVNRSDSGFNLAKQDLE 383 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 ++L + ++P+ +P+G +I+S D + SID GR L T Sbjct: 384 TGAVQVLTKTLLDESPSIAPNGGMVIYSSIYDKKNVLSMVSID--GRFKARLPATNGRVR 441 Query: 439 DPQWVGFM 446 P W F+ Sbjct: 442 APAWSPFL 449 >gi|54294385|ref|YP_126800.1| TolB protein [Legionella pneumophila str. Lens] gi|67461924|sp|Q5WWJ9|TOLB_LEGPL RecName: Full=Protein tolB; Flags: Precursor gi|53754217|emb|CAH15694.1| TolB protein [Legionella pneumophila str. Lens] gi|307610269|emb|CBW99833.1| TolB protein [Legionella pneumophila 130b] Length = 419 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 128/445 (28%), Positives = 205/445 (46%), Gaps = 37/445 (8%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 N I+L LLL F + A T N S + IA F S D ++ V+ Sbjct: 2 FNRIISLFLLL------FTGQVIALDLELTQGIN-SALPIAINSFGS-DAAAQEIGNVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F +IS Q + S+ + LGA +VTGRV + G +R+ V F L Sbjct: 54 NDLTISGQFKIISG---PQGANSQSSVSTLRQ---LGADSVVTGRVNQVG-NRIEVSFTL 106 Query: 131 WDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D I+ K F A+ R +AH ISD++YQ +TGE+G F++RI ++S G Sbjct: 107 ADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRAGGRS 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S + I+ P +SPN + ++Y +++ + + + ++ Sbjct: 167 RYSLEVADADGHNPQSLLVSSEPIM-SPSWSPNGKSISYVSFEKK---KAEIFTVSVETG 222 Query: 250 PKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +R I +F + AP +S +G+ + + K IY VDL S + ++LT I+ Sbjct: 223 QRRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPR 282 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFT 364 YSPD ++F S R G Q+Y + R++ + ASY +P I Sbjct: 283 YSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARASY-----TPDMKHIVML 337 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +F IGV G L ++P+ SP+ R ++++ + D G L + ++ Sbjct: 338 HREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQ-DRG-VLGIVSID 395 Query: 425 GRNETLINTPAYASD---PQWVGFM 446 GR + PA D P W ++ Sbjct: 396 GR--IRMRLPAREGDVQEPAWSPYL 418 >gi|291616740|ref|YP_003519482.1| TolB [Pantoea ananatis LMG 20103] gi|291151770|gb|ADD76354.1| TolB [Pantoea ananatis LMG 20103] Length = 453 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 103/420 (24%), Positives = 198/420 (47%), Gaps = 20/420 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L ++L + + NSA P+ + K+ + +V+ D Sbjct: 27 LRVTLGFFILLWAAVLHAEVRIEITQGVNSAR--PIGVVPFKWAGPGAAPEDIGGIVAAD 84 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN + + Q+ T+ + + W++LG +V G++ +V ++L D Sbjct: 85 LRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQIQPNADGSYQVSYQLVD 143 Query: 133 VKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + + W R AHT+SD+ +Q +TG KG F +RI +V ++ G Sbjct: 144 TAGAPGTVLAQNSYKITKQWLRYAAHTVSDEAFQKLTGIKGAFRTRIAYVVQTN-GGQFP 202 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + A Sbjct: 203 YELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLSNGAV 259 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ + + ++ Sbjct: 260 RQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPTWF 319 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PDS + + SD+ G Q+Y + NG +RI+ + + V S ++ + G + Sbjct: 320 PDSQTLAYTSDQAGAPQIYKIGINGGSPQRITWEGAQNQDADVASDGKSMVMISTSGGAQ 379 Query: 371 FAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 V K+D G+ + L D+ L + P+ +P+G +I+S + GS L + +GR Sbjct: 380 H---VAKQDLVTGAVQTL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVSTDGR 432 >gi|304395719|ref|ZP_07377602.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB] gi|304357013|gb|EFM21377.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB] Length = 431 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/432 (23%), Positives = 189/432 (43%), Gaps = 52/432 (12%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L ++L + + N+A P+ + K+ V +V+ D Sbjct: 5 LRVTLGFFILLWAAMLHAEVRIEITQGVNTAR--PIGVVPFKWAGSGAAPEDVGGIVAAD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN + + Q+ T+ + + W++LG +V G+V +V ++L D Sbjct: 63 LRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVASNPDGSYQVSYQLVD 121 Query: 133 VKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + + W R AHT SD+ +Q +TG KG F +RI +V ++ G Sbjct: 122 TGGAPGTVLAQNSYKVTKQWLRYAAHTASDETFQKLTGIKGAFRTRIAYVVQTN-GGQFP 180 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + A Sbjct: 181 YELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVVQTLSNGAI 237 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ ++ AP FS +G + ++ K ++++Y +DL S T ++T+ + + ++ Sbjct: 238 RQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQTRQVTDGRYNSTEPTWF 297 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---------------------------- 342 PDS + + SD+ G Q+Y + NG +RI+ Sbjct: 298 PDSQTLAYTSDQAGAPQIYKVGINGGTPQRITWEGGQNQDADVATDGKSMVMISTNGGAQ 357 Query: 343 ----QDKEA--------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLV 387 QD E ++ D P +P G ++ ++ G + ++ DG + RL Sbjct: 358 HVAKQDLETGAVQTLTDTFLDETPSLAPNGTMVIYSSTQGMGSVLQLVSTDGRFKARLPA 417 Query: 388 EDSNLQAPTWSP 399 D ++ P WSP Sbjct: 418 TDGQVKFPAWSP 429 >gi|329295948|ref|ZP_08253284.1| translocation protein TolB [Plautia stali symbiont] Length = 431 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 103/439 (23%), Positives = 203/439 (46%), Gaps = 17/439 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L ++L + + N+A P+ + ++ + +V+ D Sbjct: 5 LRVTLGFFVLLWAAMLHAEVRIEITQGVNTAR--PIGVVPFQWAGPGAAPEDIGGIVAAD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN + + Q+ T+ + + W++LG +V G+V +V ++L D Sbjct: 63 LRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVTPNADGSYQVAYQLVD 121 Query: 133 VKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + + W R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 122 TGGAPGTVLAQNSYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFP 180 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + A Sbjct: 181 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVVQTLANGAI 237 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ ++ AP FS +G + ++ K ++++Y +DL S T ++T+ + + ++ Sbjct: 238 RQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVIDLASGQTRQVTDGRYNSTEPTWF 297 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PDS + + SD+ G Q+Y + NG +RI+ + + V S ++ + G + Sbjct: 298 PDSQTLAYTSDQAGAPQIYKVNVNGGTPQRITWEGAQNQDADVSSDGKTMVMISSAGGAQ 357 Query: 371 FAIGVMKKDGSQERL-LVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-N 427 V K+D + + D+ L + P+ +P+G +I+S + GS L + +GR Sbjct: 358 H---VAKQDLETGAVQTITDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVSTDGRFK 412 Query: 428 ETLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQGKFPAWSPYL 431 >gi|156973900|ref|YP_001444807.1| translocation protein TolB [Vibrio harveyi ATCC BAA-1116] gi|156525494|gb|ABU70580.1| hypothetical protein VIBHAR_01610 [Vibrio harveyi ATCC BAA-1116] Length = 442 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 120/458 (26%), Positives = 204/458 (44%), Gaps = 47/458 (10%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 + VL+G + A V T+ + + PV++ K+ + L +S V++ DLQRS Sbjct: 1 MFVLLGSLTSVAHAALELVITDGIDSARPVAVVPFKWEGSEPLPTDISAVIASDLQRSGK 60 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F+ + Q N + F W LG L+TG + K + V ++L DV R Q Sbjct: 61 FSPVPTSKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNYVVNYQLVDVV-RGQ 118 Query: 139 IIGKK-----------------FFSSPAS-----WRKIAHTISDDIYQSITGEKGDFNSR 176 + G K F+ A+ R+ AH ISD +Y+ +TGE+G F +R Sbjct: 119 LTGGKSKALGGDGELVLSKDHVLFNKVATVEGPRMREYAHRISDLVYEQLTGERGAFMTR 178 Query: 177 ILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I +V VV+ L V D DG N R + S+ Q L P +SP+ QK+AY ++ + Sbjct: 179 IAYV---VVNDKDNFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYVSFQNG 234 Query: 235 D----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 I+ +Y + +I P+ G APRFS +G + + + K ++ +Y++DL Sbjct: 235 QAEIFIMNIYTGEREKITSYPRHNG-------APRFSPDGSQLALVLSKTGSLQVYTLDL 287 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 288 KTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLGSGSTNRLTWQGSQNL 347 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 + +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 348 GGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVIYSSI 406 Query: 410 KDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + + SID GR L T P W F+ Sbjct: 407 YNKKNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 442 >gi|59711569|ref|YP_204345.1| translocation protein TolB [Vibrio fischeri ES114] gi|67461862|sp|Q5E689|TOLB_VIBF1 RecName: Full=Protein tolB; Flags: Precursor gi|59479670|gb|AAW85457.1| periplasmic protein TolB [Vibrio fischeri ES114] Length = 450 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 118/458 (25%), Positives = 209/458 (45%), Gaps = 41/458 (8%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 + L V+ GF + V T + + P+ I K+ +L +S ++S DLQR Sbjct: 6 ILTLFVVCLGFSQVAKAELELVITEGIDSARPIGIVPFKWHGEGKLPQDISAIISSDLQR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK- 134 S F+ ++ + Q DS ++ W +G +VTG V + + V ++L DV Sbjct: 66 SGKFSPVATNKMPQ-TPYKDSDINYEAWTKMGVDAIVTGEVKLNAQGKYEVTYKLIDVVR 124 Query: 135 -------------------DRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFN 174 R I+ K S S RK AH ISD +Y+ +TGE+G F Sbjct: 125 GQLTKGQSKALDESGKLVLTRDHILVNKVASLSTKQLRKYAHRISDVVYEKLTGERGAFL 184 Query: 175 SRILFVSESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 +RI +V VV+ L + D DG N R + S+ I+ P +SP+ +K+AY +++ Sbjct: 185 TRIAYV---VVNDKAQYPYQLRIADYDGYNERLVLKSKQPIM-SPAWSPDGKKLAYVSFE 240 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + ++++M+ + + I ++ APRFS +G + I + K ++ IY VDL++ Sbjct: 241 NRKS-QIFIMNIYTGKR-ELIASYPRHNGAPRFSHDGDKLAIVLSKSGSLQIYVVDLKTK 298 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ++T N ++PD+ ++F SDR GK Q+Y + KR++ + Sbjct: 299 KMSQITRGRANNTEPFWAPDNKSLIFTSDRGGKPQIYRVNLGDGSTKRLTWQGSQNLGGQ 358 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS---RK 409 + +P G I S F + + ++L + ++P+ +P+G +I+S RK Sbjct: 359 I-TPDGKYIVMVNRSETGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIYRK 417 Query: 410 KDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 ++ L + ++GR L T P W F+ Sbjct: 418 QN-----VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|93005961|ref|YP_580398.1| TolB-like [Psychrobacter cryohalolentis K5] gi|92393639|gb|ABE74914.1| TolB-like [Psychrobacter cryohalolentis K5] Length = 430 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 190/404 (47%), Gaps = 29/404 (7%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 +AF F L S ++ DL ++++ + SQ+ +Q ++ + W S+G Sbjct: 44 VAFVPFAGDSVL----SPIIVNDLSKTEL-KVTSQNLPQQPRSSSELAGTLPVWQSMGIP 98 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS---PASWRKIAHTISDDIYQSI 166 LV G + + ++ ++ + +VK + I GK+ ++ S R H I+D +Y+ I Sbjct: 99 YLVVGST-RSSRGKVVTDYEVIEVKTGRVIEGKQTLTADNNKDSMRYAGHVIADKVYELI 157 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNS-LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 TG GDF+ RI ++ E + +G K S L VMD DG N + +T I F P +SP+ + Sbjct: 158 TGIPGDFSGRIAYIEE-IGTGKAKVSRLKVMDADGENAKTITEVSGSI-FSPAWSPDGNR 215 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AY+ D+ +Y+ A + F L+P FS +G + L S + + DIY Sbjct: 216 IAYSVQRDKSYPVIYVQSVSGGGA-TPLTPFPGSNLSPSFSPDGSKILFSSSFEGSADIY 274 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQ 343 + RLTN + SY+PD VF SD+ G K Q+Y + ++S Sbjct: 275 EMSASGGQPRRLTNWPSSEVQPSYAPDGRSFVFVSDKTGFNKPQIYRYEFGSGRTTKVSN 334 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 A+ P +S G IAF +G A VM G+ L +AP++SP+G+ Sbjct: 335 SGYAT--SPQFSSDGTQIAF--LNGRSAA--VMNSGGAVTANLGNTGIDEAPSFSPNGKR 388 Query: 404 LIFSRKKDGDTGSKLYSIDLNG------RNETLINTPAYASDPQ 441 ++++ K+ G L LNG + I +P +++ P+ Sbjct: 389 VVYASKQGGK--GVLTIKSLNGGEAFGKSGQGTIRSPVWSASPR 430 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD ++I + R+ + +QS S P +SP G I F+ Sbjct: 206 SPAWSPDGNRIAYSVQRDKSYPVIYVQSVSGGGATPLTPFPGSNLSPSFSPDGSKILFSS 265 Query: 366 FSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I M G Q R L S +Q P+++P GRS +F K G ++Y + Sbjct: 266 SFEGSADIYEMSASGGQPRRLTNWPSSEVQ-PSYAPDGRSFVFVSDKTGFNKPQIYRYEF 324 Query: 424 NGRNETLINTPAYASDPQW 442 T ++ YA+ PQ+ Sbjct: 325 GSGRTTKVSNSGYATSPQF 343 >gi|197336086|ref|YP_002155723.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio fischeri MJ11] gi|226705896|sp|B5FD05|TOLB_VIBFM RecName: Full=Protein tolB; Flags: Precursor gi|197317576|gb|ACH67023.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio fischeri MJ11] Length = 450 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 119/458 (25%), Positives = 208/458 (45%), Gaps = 41/458 (8%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 + L V+ GF + V T + + P+ I K+ +L +S ++S DLQR Sbjct: 6 ILTLFVVCLGFSQVAKAELELVITEGIDSARPIGIVPFKWHGEGKLPQDISAIISSDLQR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK- 134 S F+ I + Q DS ++ W +G +VTG V + + V ++L DV Sbjct: 66 SGKFSPIPTNKMPQ-TPYKDSDINYEAWTKMGVDAIVTGEVKLNAQGKYEVTYKLIDVVR 124 Query: 135 -------------------DRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFN 174 R I+ K S S RK AH ISD +Y+ +TGE+G F Sbjct: 125 GQLTKGQSKALDESGKLVLTRDHILVNKVASLSTKQLRKYAHRISDVVYEKLTGERGAFL 184 Query: 175 SRILFVSESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 +RI +V VV+ L + D DG N R + S+ I+ P +SP+ +K+AY +++ Sbjct: 185 TRIAYV---VVNDKAQYPYQLRIADYDGYNERLVLKSKQPIM-SPAWSPDGKKLAYVSFE 240 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + ++++M+ + + I ++ APRFS +G + I + K ++ IY VDL++ Sbjct: 241 NRKS-QIFIMNIYTGKR-ELIASYPRHNGAPRFSHDGDKLAIVLSKSGSLQIYVVDLKTK 298 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ++T N ++PD+ ++F SDR GK Q+Y + KR++ + Sbjct: 299 KMSQITRGRANNTEPFWAPDNKSLIFTSDRGGKPQIYRVNLGDGSTKRLTWQGSQNLGGQ 358 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS---RK 409 + +P G I S F + + ++L + ++P+ +P+G +I+S RK Sbjct: 359 I-TPDGKYIVMVNRSETGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIYRK 417 Query: 410 KDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 ++ L + ++GR L T P W F+ Sbjct: 418 QN-----VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|149192087|ref|ZP_01870311.1| translocation protein TolB precursor [Vibrio shilonii AK1] gi|148834073|gb|EDL51086.1| translocation protein TolB precursor [Vibrio shilonii AK1] Length = 442 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 110/425 (25%), Positives = 198/425 (46%), Gaps = 36/425 (8%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ +L VS V++ DLQRS F+ ++ Q + I F+ W S+ Sbjct: 29 PIAIVPFKWEGEGKLPHDVSAVIASDLQRSGKFSPVATSKMPQTPYDASDI-NFEAWTSI 87 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK-----------------FFSSPA 149 G L+TG ++K + V ++L DV R Q+ G K F A Sbjct: 88 GVDSLLTGTIVKNAEGNYEVSYQLVDVV-RGQLTGGKSKALSDDGQLVLSNDHVLFKKKA 146 Query: 150 S-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN 202 + R+ AH ISD +Y+ +TGE+G F +RI +V VV+ + + D DG N Sbjct: 147 TVPGNRLREYAHRISDLVYEELTGERGAFLTRIAYV---VVNDKDQYPYQMRIADYDGYN 203 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + S+ Q L P +SP+ +K+AY ++ + +++M+ + ++I +F A Sbjct: 204 EKLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIFIMNIYTGKR-EKITSFPRHNGA 260 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PRFS +GK +++ K + +Y+++L++ ++T+ N + PD ++F SDR Sbjct: 261 PRFSPDGKTLALTLSKTGQLHVYTLNLETRKLRQITSGRSNNTEPFWKPDGKSLIFTSDR 320 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G Q+Y + + KRI+ + + +P G + S F + + Sbjct: 321 GGNPQIYEVNLSDGKTKRITWQGRQNLGGQI-TPDGRYLVMVNRSNSGFNLAKQDLETGS 379 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQ 441 ++L + ++P+ +P+G +I+S + + SID GR L T P Sbjct: 380 VQILTKTLLDESPSIAPNGGMVIYSSIYNKTNVLSMVSID--GRFKARLPATNGRVRAPA 437 Query: 442 WVGFM 446 W F+ Sbjct: 438 WSPFL 442 >gi|119504264|ref|ZP_01626344.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2080] gi|119459772|gb|EAW40867.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2080] Length = 431 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 106/433 (24%), Positives = 202/433 (46%), Gaps = 13/433 (3%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L+L L FP +++ N +P+++ + V+ ++ DL RS Sbjct: 7 VLILSLCVATFPALAQLQIEITRGVDNPTPIAVVPFGWSGSGASPEDVARIIDSDLARSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F+ +S+ + + F+DW ++ + ++ GR L++ ++L+D Sbjct: 67 QFSPVSRRDMLSYPSRGSEL-YFRDWRAINSDYVLIGRYELAAAGNLKLSWQLFDSTREL 125 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGIIKNSLCVM 196 + + + R +AH I+D++Y+ +TG G F +R+L+VS + +G L + Sbjct: 126 SVEEGVVMGAASEVRMLAHKIADEVYEKLTGIPGAFATRLLYVSVTRNPAGKDFYRLTLA 185 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DGA L SR+ IL P +SPN +VAY +++ +Y + R A +++ NF Sbjct: 186 DSDGARPIVLLESREPIL-GPSWSPNGDEVAYVSFETSRPA-IYRQNLRTG-AREQLTNF 242 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + + +P FS +G + + KD + DIY ++L S RLT I+ ++ PD + Sbjct: 243 KGLNNSPVFSPDGNSMAMVLSKDGSPDIYLMNLASKRLTRLTKHYAIDTEPTWMPDGQSL 302 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 +F SDR G+ Q+Y + R++ D + V + G +A + I V Sbjct: 303 LFTSDRGGRPQIYRYDLKSGNTTRVTFDGRYNARARV-AQDGRNVALVHQQNGAYHIAVF 361 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + +L S ++PT +P+G ++++ K++G S L ++ ++G N PA Sbjct: 362 DLVTERLTVLTTTSLDESPTIAPNGSIVLYATKRNGQ--SILGAVAVDG--GVSFNLPAR 417 Query: 437 ---ASDPQWVGFM 446 +P W ++ Sbjct: 418 DGEVQEPSWSPYL 430 >gi|148359107|ref|YP_001250314.1| TolB colicin import protein [Legionella pneumophila str. Corby] gi|166229981|sp|A5IC68|TOLB_LEGPC RecName: Full=Protein tolB; Flags: Precursor gi|148280880|gb|ABQ54968.1| TolB colicin import protein [Legionella pneumophila str. Corby] Length = 419 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 118/410 (28%), Positives = 191/410 (46%), Gaps = 30/410 (7%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 S + IA F S D ++ V+ DL S F +IS Q + S+ + Sbjct: 30 SALPIAINSFGS-DAAAQEIGNVIENDLTISGQFKIISG---PQGANSQSSVSTLRQ--- 82 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 LGA +VTGRV + G +R+ V F L D I+ K F A+ R +AH ISD++YQ Sbjct: 83 LGADSVVTGRVNQVG-NRIEVSFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQ 141 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TGE+G F++RI ++S G + SL V D DG N + L S + I+ P +SPN + Sbjct: 142 KLTGERGIFSTRIAYISVQRNGGRSRYSLEVADADGHNPQSLLVSSEPIM-SPSWSPNGK 200 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++Y +++ + + + ++ +R I +F + AP +S +G+ + + K Sbjct: 201 SISYVSFEKK---KAEIFTVSVETGQRRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPK 257 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS- 342 IY VDL S + ++LT I+ YSPD ++F S R G Q+Y + R++ Sbjct: 258 IYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTF 317 Query: 343 ---QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 + ASY +P I +F IGV G L ++P+ SP Sbjct: 318 EGNYNARASY-----TPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSP 372 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 + R ++++ + + SID GR + PA D P W ++ Sbjct: 373 NSRLVLYATRYQNRGVLGIVSID--GR--IRMRLPAREGDVQEPAWSPYL 418 >gi|319943002|ref|ZP_08017285.1| TolB protein [Lautropia mirabilis ATCC 51599] gi|319743544|gb|EFV95948.1| TolB protein [Lautropia mirabilis ATCC 51599] Length = 425 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 191/399 (47%), Gaps = 20/399 (5%) Query: 48 VSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS-QDSFKQKITNPDSIPRFQDWNSL 106 V +A F + ++ V+ +DLQRS +F L++ ++ + S R Q Sbjct: 38 VPLALAPFNGAGQAPQQLDVVIQEDLQRSGMFRLVNLTETLSENSPLDMSALRGQ----- 92 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 GA ++ G V RL ++L D + I + + R H I+D +Y+ + Sbjct: 93 GADSVLVGSVQPVANARLEFRYKLADTVRQSVITEATMTAGESDVRLAGHRIADIVYEKL 152 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 TG KG F++RI FV++ + L V D DG N++ + + I+ P +SP+ +++ Sbjct: 153 TGIKGIFSTRIAFVTKQGN----RYRLNVADWDGQNVQTALNAGEPII-SPAWSPDGKRL 207 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 AY +++ + + VY+ D + K + F+ AP +S +G+ +++ +D IY Sbjct: 208 AYVSFETKKPV-VYVHDLASGQR-KAVAKFKGSNSAPAWSHDGRSLAVTLTRDGGSQIYQ 265 Query: 287 VDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 V + RLT + I+ YSPD + F SDR G Q+Y M SNG R++ Sbjct: 266 VSADGGESARRLTQSSSIDTEPVYSPDGKFLYFTSDRGGAPQIYRMPSNGGAASRVTFG- 324 Query: 346 EASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 +SY P SP G +A+ +F I + E LL + ++P+++P+G+ + Sbjct: 325 -SSYNVSPRISPDGQQMAYVTQRNGRFLIALKDLQSGDETLLTDTGEEESPSFAPNGQWV 383 Query: 405 IFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 +++ + G L ++ +GR + L ++ + +P W Sbjct: 384 MYTTRAGGR--EYLMAVSTDGRVKQRLSSSTSSVREPAW 420 >gi|269139918|ref|YP_003296619.1| translocation protein [Edwardsiella tarda EIB202] gi|267985579|gb|ACY85408.1| translocation protein [Edwardsiella tarda EIB202] gi|304559753|gb|ADM42417.1| tolB protein precursor [Edwardsiella tarda FL6-60] Length = 430 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 106/418 (25%), Positives = 196/418 (46%), Gaps = 24/418 (5%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 + LLVL + + +SA P+ + K++ + +++ DL+ S Sbjct: 8 MVGLLVLWASVLHAEVRIVITQGVDSAR--PIGVVPFKWMGPGAAPENIGGIIAADLRNS 65 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-D 135 FN I Q+ + + W +LG +V G+V V ++L D + Sbjct: 66 GKFNPIDASRMPQQPSTAAEVTP-AAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTSGN 124 Query: 136 RKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 ++ + + W R AHT SD++++ +TG KG F +RI +V ++ G L Sbjct: 125 PGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELR 183 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG N +++ + L P +SP+ K+AY T+ E ++ T + A +++ Sbjct: 184 VADYDGYN-QFVVHRSAEPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLSNGAIRQVA 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F +P FS +G + ++ K ++++Y +DL S A ++T+ N ++ PDS Sbjct: 241 SFPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPTWFPDSQ 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + F SD+ G+ Q+Y M NG +R+ SQ+++A SP G + S Sbjct: 301 NLAFTSDQAGRPQIYKMNINGGAAQRLTWEGSQNQDAEV-----SPDGKFLVMV--SSNA 353 Query: 371 FAIGVMKKD-GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 A + K D G+ ++ D+ L + P+ +P+G +I+S + GS L + ++GR Sbjct: 354 GAQHIAKLDLGTNATQVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGSVLQLVSIDGR 409 >gi|261343492|ref|ZP_05971137.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rustigianii DSM 4541] gi|282568638|gb|EFB74173.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rustigianii DSM 4541] Length = 430 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 105/391 (26%), Positives = 178/391 (45%), Gaps = 20/391 (5%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI-TNPDSI 97 NSA P+ + K+ +V ++V DL+ S FN I Q+ T + I Sbjct: 30 GVNSAQ--PIGVVPFKWAGAGAPPQEVGQIVGADLRNSGKFNPIEPSRMPQQPGTASEVI 87 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKKFFSSPASW-RKIA 155 P W +LG +V G+V V ++L DV + ++ + F W R A Sbjct: 88 P--DAWTTLGINAVVVGQVQPAADGSFVVSYQLVDVAANPGAVLAQNQFKVTKDWLRYAA 145 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG +G F +RI +V ++ G L V D DG N ++ + L Sbjct: 146 HTASDEVFEKLTGIRGAFRTRIAYVVKTN-GGQYPFELRVSDYDGFN-QFTVHRSPEPLM 203 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ QK+AY T++ ++ T A +++ F AP FS +G + + Sbjct: 204 SPAWSPDGQKIAYVTFESGS--SALVIQTLSSGAVRQVAKFPRHNGAPAFSPDGTKLAFA 261 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N S+ PDS +V+ SD+ G+ Q+Y M NG Sbjct: 262 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTSDQAGRPQVYKMNING 321 Query: 336 SDQKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 R+S Q+++A SP G + G + I L Sbjct: 322 GSPVRVSYEGTQNQDADV-----SPDGTFLVMVSSGGGQQHIAKQDLATGNVEYLTTTFL 376 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + P+ +P+G +I+S + T +L S D Sbjct: 377 DETPSIAPNGTMVIYSSSQGLGTILQLVSTD 407 >gi|84388529|ref|ZP_00991076.1| translocation protein TolB precursor [Vibrio splendidus 12B01] gi|84377078|gb|EAP93949.1| translocation protein TolB precursor [Vibrio splendidus 12B01] Length = 450 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 120/463 (25%), Positives = 209/463 (45%), Gaps = 46/463 (9%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 + ++ L+ F ++ + NSA P++I ++ + L VS V++ D Sbjct: 5 LLLSFVFLIATSSQFAHAALELVITDGINSAR--PIAIVPFRWEGAEPLPHDVSAVIASD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQRS F+ ++ Q + + F W +LG L+TG + K + + V ++L D Sbjct: 63 LQRSGKFSPVATSKMPQTPYSESEV-DFDAWTNLGVDSLLTGSITKNTEGQYVVNYQLID 121 Query: 133 V-------------KDRKQIIGKK---FFSSPAS-----WRKIAHTISDDIYQSITGEKG 171 + D Q++ K F+ A+ R+ AH ISD +Y+ +TGEKG Sbjct: 122 IVRGQLTKGQSRALSDEGQLVLSKDHVLFNKKATVPGKRLREYAHRISDLVYEELTGEKG 181 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V VV+ K L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 182 AFLTRISYV---VVNDKDKYPYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 ++ + I+ +Y D ++ P+ G APRFS +GK + + K ++ + Sbjct: 238 SFQNGQAEIFIMNIYTGDREKVTSYPRHNG-------APRFSPDGKTLALVLSKTGSLQV 290 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y++DL S ++T N + PD ++F SDR GK Q+Y + + + RI+ Sbjct: 291 YTLDLASRKLTQITRGRSNNTEPFWYPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITWQ 350 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + + +P G + S F + + ++L + ++P+ +P+G + Sbjct: 351 GSQNLGGQI-TPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMV 409 Query: 405 IFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 I+S + + SID GR L T P W F+ Sbjct: 410 IYSSIYNKTNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|293390508|ref|ZP_06634842.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951042|gb|EFE01161.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 426 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 109/423 (25%), Positives = 192/423 (45%), Gaps = 48/423 (11%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L ++L+G F A V++ + S P+++ K+ ++E++S DL+ Sbjct: 8 FSLFIMLLG--FTMVARAEVRIVIDEVMDSARPIAVVPFKWNGPGSAPANIAEIISADLR 65 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S FN + + Q+ T+ + + W++LG + ++ G+V + ++L D Sbjct: 66 NSGKFNPLPESKMPQQPTSASEV-NPEAWSALGIEAVIVGQVTPS-NGGFDIAYQLVDTM 123 Query: 135 DR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 I+ + ++ W R AHTISD+ ++ +TG +G F +RI +V + G Sbjct: 124 GSVGSILSQNQYTVMQKWLRYGAHTISDETFEKLTGIRGAFRTRIAYVVQKN-GGSQPYE 182 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + V D DG N +++ Q P +SP+ +K+AY T++++ +V L D + A K Sbjct: 183 VRVADYDGFN-QFIVNRSSQPFMSPAWSPDGKKLAYVTFENKK-AQVVLQDL-VSMARKV 239 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +F AP FS +G R + KD ++IY +L S +LT+ N S+SPD Sbjct: 240 VASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQVSQLTSGAGNNTEPSWSPD 299 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQK--------RISQDKE------------------ 346 IVF SDR G Q+Y M ++G +IS D Sbjct: 300 GQSIVFTSDRGGSPQVYRMSASGGGASLIGGRGSGQISSDGNLLVMVDVNNNIVKKDLTS 359 Query: 347 -------ASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPT 396 +++ D P SP G ++ ++ G + ++ DG + RL D ++ P Sbjct: 360 GSSEVLSSTFLDESPSISPNGIMVIYSSTQGLGKVLQLVSTDGRFKARLPGNDGQVKFPA 419 Query: 397 WSP 399 WSP Sbjct: 420 WSP 422 >gi|261868492|ref|YP_003256414.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413824|gb|ACX83195.1| hypothetical protein D11S_1837 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 426 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 109/423 (25%), Positives = 192/423 (45%), Gaps = 48/423 (11%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L ++L+G F A V++ + S P+++ K+ ++E++S DL+ Sbjct: 8 FGLFIMLLG--FAMVARAEVRIVIDEVMDSARPIAVVPFKWNGPGSAPANIAEIISADLR 65 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S FN + + Q+ T+ + + W++LG + ++ G+V + ++L D Sbjct: 66 NSGKFNPLPESKMPQQPTSASEV-NPEAWSALGIEAVIVGQVTPS-NGGFDIAYQLVDTM 123 Query: 135 DR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 I+ + ++ W R AHTISD+ ++ +TG +G F +RI +V + G Sbjct: 124 GSVGSILSQNQYTVMQKWLRYGAHTISDETFEKLTGIRGAFRTRIAYVVQKN-GGSQPYE 182 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + V D DG N +++ Q P +SP+ +K+AY T++++ +V L D + A K Sbjct: 183 VRVADYDGFN-QFIVNRSSQPFMSPAWSPDGKKLAYVTFENKK-AQVVLQDL-VSMARKV 239 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +F AP FS +G R + KD ++IY +L S +LT+ N S+SPD Sbjct: 240 VASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQVSQLTSGAGNNTEPSWSPD 299 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQK--------RISQDKE------------------ 346 IVF SDR G Q+Y M ++G +IS D Sbjct: 300 GQSIVFTSDRGGSPQVYRMSASGGGASLIGGRGSGQISSDGNLLVMVDVNNNIVKKDLTS 359 Query: 347 -------ASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPT 396 +++ D P SP G ++ ++ G + ++ DG + RL D ++ P Sbjct: 360 GSSEVLSSTFLDESPSISPNGIMVIYSSTQGLGKVLQLVSTDGRFKARLPGNDGQVKFPA 419 Query: 397 WSP 399 WSP Sbjct: 420 WSP 422 >gi|254499317|ref|ZP_05111989.1| TolB colicin import protein [Legionella drancourtii LLAP12] gi|254351472|gb|EET10335.1| TolB colicin import protein [Legionella drancourtii LLAP12] Length = 419 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 179/399 (44%), Gaps = 57/399 (14%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 S + IA F S D ++S+++ DL S F ++S P++ Sbjct: 30 SALPIAINTFGS-DRASQEISQIIENDLTFSGQFKIVSGPQ------GPNAQSSVSTLKQ 82 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 LGA +VTGRV+ G + + F L D V + ++ K + + R +AH ISD++YQ Sbjct: 83 LGADSVVTGRVVPVG-NHYEISFTLTDAVANGTTLLTKTYQVNANQLRPLAHHISDEVYQ 141 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TGE+G F++RI ++S +L V D DG N + L S + I+ P ++PN + Sbjct: 142 KLTGERGIFSTRIAYISVQRTPQKTNYALEVADADGHNPQSLLISSEPIM-SPSWAPNGK 200 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++Y +++ + R + ++ +R I +F + AP +S +G++ + + K Sbjct: 201 SISYVSFEKK---RAQIFTVSVETGQRRLITSFPGINGAPAWSPDGRQLAVVLSKSGTPK 257 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS- 342 IYSVD+ S ++LT I+ Y+PD I+F S R G Q+Y + R++ Sbjct: 258 IYSVDINSGNMKQLTFGDAIDTEPRYAPDGKSILFTSGRGGSPQIYRLSLADGQVSRMTF 317 Query: 343 ---QDKEASYF--------------------------------------DPVWSPQGDLI 361 + ASY P +P G LI Sbjct: 318 EGNYNARASYTPDMKSIVMLHRDDKQFNIGMQNVSGGPVVSLTFSGRDESPSVAPNGRLI 377 Query: 362 AFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + + +K +G++ DG + +L D ++Q P WSP Sbjct: 378 LYATHNQDKGILGIVSLDGRIRMKLPARDGDIQEPAWSP 416 >gi|54297484|ref|YP_123853.1| TolB protein [Legionella pneumophila str. Paris] gi|67461926|sp|Q5X4Z1|TOLB_LEGPA RecName: Full=Protein tolB; Flags: Precursor gi|53751269|emb|CAH12680.1| TolB protein [Legionella pneumophila str. Paris] Length = 419 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 118/410 (28%), Positives = 193/410 (47%), Gaps = 30/410 (7%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 S + IA F S D ++ V+ DL S F +IS Q + S+ + Sbjct: 30 SALPIAINSFGS-DAAAQEIGNVIENDLTISGQFKIISG---PQGANSQSSVSTLRQ--- 82 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 LGA +VTGRV + G +R+ V F L D I+ K F A+ R +AH ISD++YQ Sbjct: 83 LGADSVVTGRVNQVG-NRIEVSFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQ 141 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TGE+G F++RI ++S G + SL V D DG N + L S + I+ P +SPN + Sbjct: 142 KLTGERGIFSTRIAYISVQRNGGRSRYSLEVADADGHNPQSLLVSSEPIM-SPSWSPNGK 200 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++Y +++ + + + ++ +R I +F + AP +S +G+ + + K Sbjct: 201 SISYVSFEKK---KAEIFTVSVETGQRRLITSFPGINGAPAWSPDGRHLAVVLSKSGTPK 257 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS- 342 IY VDL S + ++LT I+ YSPD ++F S R G Q+Y + R++ Sbjct: 258 IYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTF 317 Query: 343 ---QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 + ASY +P I +F IGV G L ++P+ SP Sbjct: 318 EGNYNARASY-----TPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSP 372 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 + R ++++ + D G L + ++GR + PA D P W ++ Sbjct: 373 NSRLVLYATRYQ-DRG-VLGIVSIDGR--IRMRLPAREGDVQEPAWSPYL 418 >gi|296107155|ref|YP_003618855.1| TolB colicin import protein [Legionella pneumophila 2300/99 Alcoy] gi|295649056|gb|ADG24903.1| TolB colicin import protein [Legionella pneumophila 2300/99 Alcoy] Length = 419 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 128/445 (28%), Positives = 205/445 (46%), Gaps = 37/445 (8%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 N I+L LLL F + A T N S + IA F S D ++ V+ Sbjct: 2 FNRIISLFLLL------FTGQVIALDLELTQGIN-SALPIAINSFGS-DAAAQEIGNVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F +IS Q + S+ + LGA +VTGRV + G +R+ V F L Sbjct: 54 NDLTISGQFKIISG---PQGANSQSSVSTLRQ---LGADSVVTGRVNQVG-NRIEVSFTL 106 Query: 131 WDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D I+ K F A+ R +AH ISD++YQ +TGE+G F++RI ++S G Sbjct: 107 ADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRS 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S + I+ P +SPN + ++Y +++ + + + ++ Sbjct: 167 RYSLEVADADGHNPQSLLVSSEPIM-SPSWSPNGKSISYVSFEKK---KAEIFTVSVETG 222 Query: 250 PKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +R I +F + AP +S +G+ + + K IY VDL S + ++LT I+ Sbjct: 223 QRRLITSFPGINGAPAWSPDGRHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPR 282 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFT 364 YSPD ++F S R G Q+Y + R++ + ASY +P I Sbjct: 283 YSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARASY-----TPDMKHIVML 337 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +F IGV G L ++P+ SP+ R ++++ + D G L + ++ Sbjct: 338 HREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQ-DRG-VLGIVSID 395 Query: 425 GRNETLINTPAYASD---PQWVGFM 446 GR + PA D P W ++ Sbjct: 396 GR--IRMRLPAREGDVQEPAWSPYL 418 >gi|315180559|gb|ADT87473.1| translocation protein TolB precursor [Vibrio furnissii NCTC 11218] Length = 439 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 115/444 (25%), Positives = 203/444 (45%), Gaps = 36/444 (8%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 F ++ + NSA P++I K+ +L VS V++ DLQRS F+ I + Sbjct: 8 FANAALELVITDGINSAR--PIAIVPFKWEGKTKLPQDVSGVIASDLQRSGKFSPIPTNK 65 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV------------- 133 Q N + +F W S+G L+TG + + + ++L DV Sbjct: 66 MPQTPYNEADV-KFDAWTSIGVDALLTGSITQNADGNYVINYQLVDVVRGQLTQGQSRAL 124 Query: 134 -KDRKQIIGK------KFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 D + ++ K K + PA R+ AH I+D +Y+ +TGE+G F +RI +V VV Sbjct: 125 SSDGQLVLSKDHVLFNKVATVPAKRMREYAHRIADLVYEELTGERGAFLTRIAYV---VV 181 Query: 186 SG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + L V D DG N R + S+ Q L P +SP+ +K+AY ++ + +Y+M+ Sbjct: 182 NDKDAYPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIYIMN 239 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 +++ ++ APRFS +GK + + K ++ +Y++DL S ++T+ Sbjct: 240 IYTGER-EKVTSYPRHNGAPRFSPDGKTLALVLSKTGSLQVYTLDLTSRKLTQITSGRSN 298 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N ++PD ++F SDR GK Q+Y + KR++ + + +P G + Sbjct: 299 NTEPFWNPDGKSLIFTSDRGGKPQIYQVNLTDGATKRLTWQGSQNLGGQI-TPDGRFLVM 357 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 S F + + ++L + ++P+ +P+G +I+S + + SID Sbjct: 358 VNRSNSGFNLAKQDLETGSVQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSID- 416 Query: 424 NGR-NETLINTPAYASDPQWVGFM 446 GR L T P W F+ Sbjct: 417 -GRFKARLPATNGRVRAPAWSPFL 439 >gi|308186083|ref|YP_003930214.1| Protein tolB precursor [Pantoea vagans C9-1] gi|308056593|gb|ADO08765.1| Protein tolB precursor [Pantoea vagans C9-1] Length = 431 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 103/434 (23%), Positives = 188/434 (43%), Gaps = 56/434 (12%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L ++L + + N+A P+ + K+ V +V+ D Sbjct: 5 LRVTLGFFILLWAAMLHAEVRIEITQGVNTAR--PIGVVPFKWAGAGAAPEDVGGIVAAD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 L+ S FN + + Q+ P S Q W++LG +V G+V +V ++L Sbjct: 63 LRNSGKFNPLDRSRLPQQ---PASAQEVQPAAWSALGIDAVVVGQVASNPDGSYQVSYQL 119 Query: 131 WDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D ++ + + W R AHT SD+ +Q +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVTKQWLRYAAHTASDETFQKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + Sbjct: 179 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVVQTLSNG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ ++ AP FS +G + ++ K ++++Y +DL S T ++T+ + + + Sbjct: 236 AIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQTRQVTDGRYNSTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------------------------- 342 + PDS + + SD+ G Q+Y + NG +RI+ Sbjct: 296 WFPDSQTLAYTSDQAGAPQIYKVGLNGGTPQRITWEGGQNQDADVATDGKSMVMISTSGG 355 Query: 343 ------QDKEA--------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERL 385 QD E ++ D P +P G ++ ++ G + ++ DG + RL Sbjct: 356 AQHVAKQDLETGAVQTLTDTFLDETPSLAPNGTMVIYSSTQGMGSVLQLVSTDGRFKARL 415 Query: 386 LVEDSNLQAPTWSP 399 D ++ P WSP Sbjct: 416 PATDGQVKFPAWSP 429 >gi|323495161|ref|ZP_08100246.1| translocation protein TolB [Vibrio brasiliensis LMG 20546] gi|323310601|gb|EGA63780.1| translocation protein TolB [Vibrio brasiliensis LMG 20546] Length = 437 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/429 (26%), Positives = 197/429 (45%), Gaps = 44/429 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ +L VS V++ DLQRS F+ ++ + Q + + F W L Sbjct: 24 PIAIVPFKWEGNGKLPEDVSAVIASDLQRSGKFSPVATNKMPQTPYSEAEV-DFNAWTGL 82 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV-------------KDRKQIIGKK---FFSSPAS 150 G LVTG + + + + ++L DV D Q++ K F+ A+ Sbjct: 83 GVDALVTGSITQNAEGNYVINYQLVDVVRGQLTQGQSKALSDDGQLVLSKDHVLFNKRAT 142 Query: 151 -----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANI 203 R+ AH ISD +Y+++TGEKG F +RI +V VV+ L V D DG N Sbjct: 143 VPGKRLREYAHRISDLVYEALTGEKGAFLTRIAYV---VVNDKDQFPYQLRVSDYDGYNE 199 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMD-TRIDRAPKRIGNFRS 258 R + S+ Q L P +SP+ +K+AY ++ + I+ +Y + ++ P+ G Sbjct: 200 RLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGEREKVTSYPRHNG---- 254 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 APRFS +G + + + K ++ +Y++DL S ++T N + PD ++F Sbjct: 255 ---APRFSPDGSKLALVLSKTGSLQVYTLDLNSRKLTQITRGRSNNTEPFWHPDGKSLIF 311 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR GK Q+Y + + KRI+ + + +P G + S F + + Sbjct: 312 TSDRGGKPQIYQVDLASNSTKRITWQGSQNLGGQI-TPDGRFLVMVNRSNTGFNLAKLDL 370 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYA 437 + ++L + ++P+ +P+G +I+S + + SID GR L T Sbjct: 371 ETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKTNVLSMVSID--GRFKARLPATNGRV 428 Query: 438 SDPQWVGFM 446 P W F+ Sbjct: 429 RAPAWSPFL 437 >gi|212712433|ref|ZP_03320561.1| hypothetical protein PROVALCAL_03527 [Providencia alcalifaciens DSM 30120] gi|212684890|gb|EEB44418.1| hypothetical protein PROVALCAL_03527 [Providencia alcalifaciens DSM 30120] Length = 430 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 104/391 (26%), Positives = 177/391 (45%), Gaps = 20/391 (5%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI-----TN 93 NSA P+ + K+ +V +V DL+ S FN I + Q+ Sbjct: 30 GVNSAQ--PIGVVPFKWAGAGAPPQEVGGIVGADLRNSGKFNPIDPNRMPQQPGTASEVT 87 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKKFFSSPASW- 151 PD+ W +LG +V G+V V ++L DV + ++ + F W Sbjct: 88 PDA------WTALGINAVVVGQVQPAADGSYVVSYQLVDVAANPGAVLAQNQFKVTKDWL 141 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AHT SD++++ +TG +G F +RI +V ++ G L V D DG N ++ Sbjct: 142 RYAAHTASDEVFEKLTGIRGAFRTRIAYVVKTN-GGQYPYELRVSDYDGFN-QFTVHRSP 199 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + L P +SP+ QK+AY T++ ++ T A +++ +F AP FS +G + Sbjct: 200 EPLMSPAWSPDGQKIAYVTFESGS--SALVIQTLSSGAVRQVASFPRHNGAPAFSPDGTK 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++ K ++++Y +DL S ++T+ N S+ PDS +V+ SD+ G+ Q+Y M Sbjct: 258 LAFALSKTGSLNLYVMDLGSGQIRQVTDGRSNNTEPSWMPDSQTLVYTSDQAGRPQIYKM 317 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 NG R+S + + D SP G +A G + I L Sbjct: 318 NINGGSPVRVSYEGSQNQ-DADVSPDGTFLAMVSSGGGQQHIAKQDLATGNVEYLTSTFL 376 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + P+ +P+G +I+S + T +L S D Sbjct: 377 DETPSIAPNGTMVIYSSSQGLGTILQLVSTD 407 >gi|238757962|ref|ZP_04619143.1| hypothetical protein yaldo0001_8380 [Yersinia aldovae ATCC 35236] gi|238703716|gb|EEP96252.1| hypothetical protein yaldo0001_8380 [Yersinia aldovae ATCC 35236] Length = 430 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/403 (25%), Positives = 186/403 (46%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D I+ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGAAGSILAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A K++ +F AP FS Sbjct: 196 HRSPQPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANSAIKQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 254 DGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G + +G I + Sbjct: 314 VYKVNINGGAPQRITWEGSQNQNADV-----SPDGKFLVLVSSNGGAQHIAKQDLETGAV 368 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + G+ L + +GR Sbjct: 369 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAVLQLVSTDGR 409 >gi|113868785|ref|YP_727274.1| translocation protein TolB [Ralstonia eutropha H16] gi|113527561|emb|CAJ93906.1| periplasmic component of the Tol biopolymer transport system [Ralstonia eutropha H16] Length = 457 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 106/409 (25%), Positives = 196/409 (47%), Gaps = 26/409 (6%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD-VFNLISQDSFKQKITNPDSIPRFQDWN 104 S + +A F + ++ ++ DL RS + N+ + + N D W Sbjct: 66 SQIPVATANFQGEAQAPQNLTAIIRADLARSGRLRNVDPGGATVAESANVD----LGSWK 121 Query: 105 SLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 S GA V G V + V FRL+D + + G F + + R AH I+D IY+ Sbjct: 122 SRGADAFVAGSVTPAAGGKYEVRFRLYDTVKGQSLGGLAFTVNQSQLRVTAHKIADYIYE 181 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + GE+G F +R+ +VS+ V G + L + D DG N + S + I+ P +SP+ Sbjct: 182 KLLGERGVFATRLSYVSK--VGG--RYQLLISDSDGQNAQVALTSNEPII-SPSWSPDGA 236 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKR--IGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +VAY +++ + + VY+ D + KR + N + AP +S +G+ +++ +D Sbjct: 237 RVAYVSFEAKKPV-VYVHDL---ASGKRTLVSNQKGNNSAPSWSPDGRHLALALSRDGNT 292 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD---QK 339 +Y V+ + RL+ + I+ YSPD I F SDR G Q+Y M ++G + + Sbjct: 293 QVYQVNADGSGIRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPASGEEGGGAQ 352 Query: 340 RISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 R++ + SY P SP G +A+ +G F + + L + +N +AP+++ Sbjct: 353 RVT--FKGSYNVSPRVSPDGKYLAYISRAG-GFKLQLQDLSNGDVTSLTDTANDEAPSFA 409 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFM 446 +G+ ++++ + G + L ++ +GR +++ + +P W FM Sbjct: 410 ANGKYILYATRVGGR--AVLAAVSTDGRTRQVLSLQSGDVREPSWGPFM 456 >gi|115378912|ref|ZP_01466048.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|115364091|gb|EAU63190.1| protein TolB [Stigmatella aurantiaca DW4/3-1] Length = 366 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 29/365 (7%) Query: 73 LQRSDVFNLISQDSF----KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 L+ S +F ++ + SF K+ IT SI F W+ +GA+ LV ++ EG LR E Sbjct: 3 LRASGLFQVLDRASFTADAKEGIT-AGSI-NFTRWSDVGAESLVKVQLGAEGGT-LRGEL 59 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RL++V ++ + R++AH ++D +Y+ +T E F SRI+FV ++ + Sbjct: 60 RLFNVGSGREDFKASHAVPTSEPRQLAHFLADALYRHLTREPSPFLSRIVFVRKARDN-- 117 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + D DG N R LT +L P P+ VA+ +Y +YL + Sbjct: 118 --RDVWTADWDGNNARALTTGGINLL--PALGPD-GTVAFTSY-RRGQPDLYLQKEGGEA 171 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISA 307 P I M FS +GKR + + E+ IY ++ + +R+T+T + IN S Sbjct: 172 RP--IVQNGQMATGVAFSPDGKRIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSP 229 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT-- 364 S+SPD ++ F S+R G Q+YVM +G++ +R++ + +Y P WSP+GDLIAFT Sbjct: 230 SWSPDGKRLAFVSNRGGSPQIYVMNVDGTNARRLT--FQGNYNQTPDWSPRGDLIAFTAR 287 Query: 365 --KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + F + V G RL + SN + P +SP+GR ++FS + G +L+ + Sbjct: 288 DERNAFDLFTVNV--DTGKITRLTQDQSNNEEPVFSPNGRLILFSSTRTGT--PQLFVMT 343 Query: 423 LNGRN 427 G N Sbjct: 344 AEGNN 348 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + V + DG++ + +T + I P +SP+ +++A+ + + ++Y+M+ A +R Sbjct: 205 IYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLAFVS-NRGGSPQIYVMNVDGTNA-RR 262 Query: 253 I---GNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + GN+ P +S G A + + A D+++V++ + RLT N Sbjct: 263 LTFQGNYNQT---PDWSPRGDLIAFTARDERNAFDLFTVNVDTGKITRLTQDQSNNEEPV 319 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +SP+ I+F S R G QL+VM + G++ + K P W+P Sbjct: 320 FSPNGRLILFSSTRTGTPQLFVMTAEGNNPLALPMGKGGG-LTPDWAP 366 >gi|269963138|ref|ZP_06177473.1| translocation protein TolB precursor [Vibrio harveyi 1DA3] gi|269832102|gb|EEZ86226.1| translocation protein TolB precursor [Vibrio harveyi 1DA3] Length = 450 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 118/461 (25%), Positives = 204/461 (44%), Gaps = 47/461 (10%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L + VL+G + A V T+ + + P+++ K+ + L +S V++ DLQR Sbjct: 6 LLGMFVLLGSLTSVAHAALELVITDGIDSARPIAVVPFKWEGSEPLPTDISAVIASDLQR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F+ + Q N + F W LG L+TG + K + V ++L DV Sbjct: 66 SGKFSPVPTSKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNYVVNYQLVDVV- 123 Query: 136 RKQIIGKK-----------------FFSSPAS-----WRKIAHTISDDIYQSITGEKGDF 173 R Q+ G F+ A+ R+ AH ISD +Y+ +TGE+G F Sbjct: 124 RGQLTGGNSKALGGDGELVLSKDHVLFNKVATVEGPRMREYAHRISDLVYEQLTGERGAF 183 Query: 174 NSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L V D DG N R + S+ Q L P +SP+ QK+AY ++ Sbjct: 184 MTRIAYV---VVNDKDNFPYQLRVADYDGYNERLVLQSK-QPLMSPAWSPDGQKLAYVSF 239 Query: 232 DDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + I+ +Y + ++ P+ G APRFS +G + + + K ++ +Y+ Sbjct: 240 QNGQAEIFIMNIYTGEREKVTSYPRHNG-------APRFSPDGSQLALVLSKTGSLQVYT 292 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +DL++ ++T N + PD ++F SDR GK Q+Y + R++ Sbjct: 293 LDLKTRKLTQITRGRSNNTEPYWHPDGKSLIFTSDRGGKPQIYKVDLGSGSTNRLTWQGS 352 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + +P G + S F + + ++L + ++P+ +P+G +I+ Sbjct: 353 QNLGGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVIY 411 Query: 407 SRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 S + + SID GR L T P W F+ Sbjct: 412 SSIYNKKNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|86146493|ref|ZP_01064816.1| translocation protein TolB precursor [Vibrio sp. MED222] gi|218709110|ref|YP_002416731.1| translocation protein TolB [Vibrio splendidus LGP32] gi|254764845|sp|B7VMJ2|TOLB_VIBSL RecName: Full=Protein tolB; Flags: Precursor gi|85835756|gb|EAQ53891.1| translocation protein TolB precursor [Vibrio sp. MED222] gi|218322129|emb|CAV18243.1| Protein tolB precursor [Vibrio splendidus LGP32] Length = 450 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 119/463 (25%), Positives = 208/463 (44%), Gaps = 46/463 (9%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 + ++ L+ F ++ + NSA P++I ++ L VS V++ D Sbjct: 5 LLLSFVFLIATSSQFAHAALELVITDGINSAR--PIAIVPFRWEGAGPLPHDVSAVIASD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQRS F+ ++ Q + + F W +LG L+TG + K + + V ++L D Sbjct: 63 LQRSGKFSPVATSKMPQTPYSETEV-NFDAWTNLGVDSLLTGSITKNAEGQYVVNYQLID 121 Query: 133 V-------------KDRKQIIGKK---FFSSPAS-----WRKIAHTISDDIYQSITGEKG 171 + D Q++ K F+ A+ R+ AH ISD +Y+ +TGEKG Sbjct: 122 IVRGQLTKGQSRALSDEGQLVLSKDHVLFNKKATVPGKRLREYAHRISDLVYEELTGEKG 181 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V VV+ K L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 182 AFLTRISYV---VVNDKDKYPYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 ++ + I+ +Y + ++ P+ G APRFS +GK + + K ++ + Sbjct: 238 SFQNGQAEIFIMNIYTGEREKVTSYPRHNG-------APRFSPDGKTLALVLSKTGSLQV 290 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y++DL S ++T N + PD ++F SDR GK Q+Y + + + RI+ Sbjct: 291 YTLDLASRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITWQ 350 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + + +P G + S F + + ++L + ++P+ +P+G + Sbjct: 351 GSQNLGGQI-TPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMV 409 Query: 405 IFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 I+S + + SID GR L T P W F+ Sbjct: 410 IYSSIYNKTNVLSMVSID--GRFKARLPATNGRVRAPSWSPFL 450 >gi|89094843|ref|ZP_01167776.1| TolB, N-terminal:TolB, N-terminal [Oceanospirillum sp. MED92] gi|89080898|gb|EAR60137.1| TolB, N-terminal:TolB, N-terminal [Oceanospirillum sp. MED92] Length = 436 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/399 (25%), Positives = 181/399 (45%), Gaps = 49/399 (12%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 +PV++ + L ++ +VS DL R+ +F ++ + + D + F+DW Sbjct: 39 TPVAVVPFSWDGSSALPEDIARIVSADLGRTGLFAMMERKNMLSFPARRDQV-FFRDWRV 97 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 + LV GR L VEF L+DV + ++ ++ + R IAH ISD IY+ Sbjct: 98 SNTEFLVIGRQQPAANGELVVEFELYDVLKEQPLLAERVTGRRDNMRGIAHYISDMIYEK 157 Query: 166 ITGEKGDFNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG +G F++RI++V+ G ++ L + D DGA + + I+ P +S + Sbjct: 158 LTGIRGAFSTRIVYVTAHAFGEGKVRYRLKMADADGARPITIREQSEPIM-SPTWSRDAT 216 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+AY +++ R+Y+ + +R+ +FR + AP +S +G + + + KD +I Sbjct: 217 KLAYVSFETGKP-RIYIQHLATGKR-ERLPSFRGLNGAPAWSPDGTKLALVLSKDGNPEI 274 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-- 342 Y DL+S R+T+ I+ ++SPD ++F SDR G+ Q+Y + +RI+ Sbjct: 275 YIQDLRSPRLIRVTHHYGIDTEPTWSPDGQSLIFTSDRGGQPQIYRIHLPTRQLERITYE 334 Query: 343 -------------------------------QDKEASYFD----------PVWSPQGDLI 361 QD + D P +P G +I Sbjct: 335 GNYNSRGRLTLDGRFLAMVHRGNDNVFRIAVQDLKTGRLDVLTDTFLDESPTIAPNGSII 394 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSP 399 + G K +G + DG+ +L S +++ P WSP Sbjct: 395 LYATQKGVKGVLGGVTLDGNVRFILPSASGDVREPAWSP 433 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 26/135 (19%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +S ++S D++++ + S GK ++Y+ ++R+ + + P WSP G +A Sbjct: 207 MSPTWSRDATKLAYVSFETGKPRIYIQHLATGKRERLPSFRGLN-GAPAWSPDGTKLAL- 264 Query: 365 KFSGEKFAIGVMKKDGSQE---------RLLVEDSNL---QAPTWSPSGRSLIFSRKKDG 412 V+ KDG+ E RL+ + PTWSP G+SLIF+ + G Sbjct: 265 ----------VLSKDGNPEIYIQDLRSPRLIRVTHHYGIDTEPTWSPDGQSLIFTSDRGG 314 Query: 413 DTGSKLYSIDLNGRN 427 ++Y I L R Sbjct: 315 Q--PQIYRIHLPTRQ 327 >gi|238765245|ref|ZP_04626174.1| hypothetical protein ykris0001_32600 [Yersinia kristensenii ATCC 33638] gi|238696517|gb|EEP89305.1| hypothetical protein ykris0001_32600 [Yersinia kristensenii ATCC 33638] Length = 430 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 187/403 (46%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D ++ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSFVVSYQLVDTSGAAGSVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANGAIRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 254 DGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G +A +G I M Sbjct: 314 VYKVNINGGAPQRITWEGSQNQNADV-----SPDGKFLALVSSNGGAQHIAKMDLVTGAV 368 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + G+ L + +GR Sbjct: 369 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAVLQLVSTDGR 409 >gi|90412129|ref|ZP_01220135.1| translocation protein TolB precursor [Photobacterium profundum 3TCK] gi|90326853|gb|EAS43238.1| translocation protein TolB precursor [Photobacterium profundum 3TCK] Length = 448 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 120/464 (25%), Positives = 207/464 (44%), Gaps = 53/464 (11%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LC+ L+ + + +SA P+ + + +L +S V++ DLQ Sbjct: 6 MGLCIALLSFSQIAQAELELVITEGVDSAR--PIGVIPFTWEGEGKLPTDISSVIASDLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPR--FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 RS F+ ++ Q PDS + + W S+G LVTG++ K V ++L D Sbjct: 64 RSGKFSPVATSKMPQ---TPDSEEQIDYNAWTSMGVDALVTGKITKNADGNYVVNYQLVD 120 Query: 133 V---------------------KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 V KD ++ + R+ AH ISD +Y+ +TG+KG Sbjct: 121 VVRGQLTSGESRGLANGELVLTKDH-LLVNNRATVKETRLRQYAHRISDVVYEQLTGDKG 179 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V V+ K+ L V D DG N R + S+ Q L P +SP+ K+AY Sbjct: 180 AFLTRIAYV---VIDDKSKHPYQLRVADYDGFNERLVLKSQ-QPLMSPAWSPDGSKLAYV 235 Query: 230 TYDDEDILRVYLMD----TR--IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 +++++ ++Y+MD TR + P+ G +PRFS +GK+ I + K ++ Sbjct: 236 SFENQQA-QIYIMDIYKGTRELVTSYPRHNG-------SPRFSPDGKKLAIVLSKTGSLQ 287 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY +L++ ++T+ N A + PD ++F SDR G+ Q+Y + + KR++ Sbjct: 288 IYIKNLETKKLTQITSGRANNTEAFWDPDGKSLIFTSDRGGQPQIYRVNLADNSTKRLTW 347 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + +P G + S F I ++L + ++P+ +P+G Sbjct: 348 QGSQNLGGQL-TPDGRYLVMVNRSDTGFNIAKQDLKTGAVQVLTKTFLDESPSIAPNGGM 406 Query: 404 LIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+S + L SID GR L T P W F+ Sbjct: 407 VIYSSVNNKSNELSLVSID--GRFKARLPTTNGRVRAPSWGPFL 448 >gi|254482467|ref|ZP_05095706.1| Tol-Pal system beta propeller repeat protein TolB [marine gamma proteobacterium HTCC2148] gi|214037158|gb|EEB77826.1| Tol-Pal system beta propeller repeat protein TolB [marine gamma proteobacterium HTCC2148] Length = 432 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 109/417 (26%), Positives = 190/417 (45%), Gaps = 69/417 (16%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 PT+I A V A +P IA+ VV DL RS F+ +S+ Sbjct: 35 PTAI-AVVPFAWQGPGTAPEDIAW---------------VVDSDLARSGQFSPVSRSDML 78 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + + + I ++DW ++ ++ L+ GRV +G ++R+E+ L+DV +KQ S Sbjct: 79 GRPSTQNDI-FYRDWRAIESEYLLIGRVSAQGT-QMRIEYELYDVLRQKQAHKGVEVGSV 136 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLT 207 R ++H +SD IYQ +TG +G F +R+L+VS + V G L + D DGA L Sbjct: 137 NEARMLSHRVSDAIYQKLTGIRGAFATRLLYVSVTRVPGGKDYYRLTLADSDGARPIVLL 196 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 SR+ ++ P +SP+ +++Y +++ I R L A +++ NF+ + AP + Sbjct: 197 ESREPVM-APGWSPDGTQISYVSFESGRPAIYRQNLSTG----AREQLTNFKGLNGAPAW 251 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + KD + DIY ++L + R+T I+ ++ PD ++F SDR G+ Sbjct: 252 SPDGNTMAMVLSKDGSPDIYLMNLMTKKLTRITRHYAIDTEPTWMPDGRSLMFTSDRGGR 311 Query: 326 EQLY------------VMQSNGSDQKRISQDKE--------------------------- 346 Q+Y + + + R++QD Sbjct: 312 PQIYRYDLRTGTTERVTFEGGYNARARVAQDGRNVVLVHQQNGQFHIALLDLVTNRLQVL 371 Query: 347 -ASYFD--PVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ + TK +G V G + RL D +++ P WSP Sbjct: 372 TSTQLDESPSIAPNGSMVLYGTKHAGRGILAAVSVDGGVKFRLPSRDGDVREPAWSP 428 >gi|254506038|ref|ZP_05118182.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus 16] gi|219550856|gb|EED27837.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus 16] Length = 433 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/422 (25%), Positives = 192/422 (45%), Gaps = 29/422 (6%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ +L VS VV+ DLQRS F+ I+ + Q + + F W L Sbjct: 19 PIAIVPFKWEGASKLPQDVSAVVASDLQRSGKFSPIATNRMPQTPYSEAEV-NFDAWTGL 77 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV--------------KDRKQIIGKK--FFSSPAS 150 G L+TG + + + + ++L DV D + ++ K F+ A+ Sbjct: 78 GVDSLLTGTITQNAEGNYVINYQLVDVVRGQLTQGQSKALSPDGQLVLSKDHVLFNKQAT 137 Query: 151 -----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 R+ AH ISD +YQ +TGE+G F +RI +V + L V D DG N R Sbjct: 138 VPGDRLREYAHRISDLVYQELTGERGAFLTRIAYVVVNDKDQKFPYQLRVSDYDGYNERL 197 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + S+ Q L P +SP+ +K+AY ++ + +Y+M+ +++ ++ APRF Sbjct: 198 VLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIYIMNIYTGER-EKVTSYPRHNGAPRF 254 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + K ++ +Y++DL++ ++T N + PD ++F SDR G+ Sbjct: 255 SPDGNSLALVLSKTGSLQVYTLDLKTRKLTQITRGRSNNTEPYWHPDGKSLIFTSDRGGR 314 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+Y + G R++ + + +P G + S F + + ++ Sbjct: 315 PQIYQVDLAGGSPNRLTWQGTQNLGGQI-TPDGRFLVMVNRSNAGFNLAKQDLETGAVQI 373 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 L + ++P+ +P+G +I+S + + SID GR L T P W Sbjct: 374 LTQTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSID--GRFKARLPATNGRVRAPAWSP 431 Query: 445 FM 446 F+ Sbjct: 432 FL 433 >gi|323143607|ref|ZP_08078284.1| Tol-Pal system beta propeller repeat protein TolB [Succinatimonas hippei YIT 12066] gi|322416670|gb|EFY07327.1| Tol-Pal system beta propeller repeat protein TolB [Succinatimonas hippei YIT 12066] Length = 426 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/403 (26%), Positives = 197/403 (48%), Gaps = 17/403 (4%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F ++G V+ VVS DL RS F+ +SQ + + + + GA+ Sbjct: 35 IAVLPFTQTADVGIDVASVVSADLMRSGKFSPLSQSQIPTGVFDGEKV-NADMMAGTGAE 93 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDV--KDRKQIIGK-KFFSSPASWRKIAHTISDDIYQSI 166 +V G+V +G + +VEF L + +++ Q+I + S + R+ AH +SD +Y+ + Sbjct: 94 AVVFGKVYPDG-NTYQVEFLLQSLVGENKGQVIAHYRGASGLNTMRQAAHRVSDRVYEKL 152 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 G+KG F +RI +V L D DG N + S + I+ P +SP+ K+ Sbjct: 153 VGQKGAFRTRIAYVVFRH-GAKFPYQLMTADYDGFNEVPILKSTEPIM-TPSWSPDGTKI 210 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y ++++++ +++ D + RI +F+ + +P +S +G + + + KD DIY Sbjct: 211 VYVSFENKNSA-IFIQDLNTKQR-TRIASFKGLNSSPAWSPDGSKIAMVLSKDGQPDIYY 268 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D+ + A +R+T I+ ++S D Q+ F S+R G+ Q+Y N +R++ + Sbjct: 269 YDVNTRAVQRVTADPAIDTEPNWSADGRQLFFTSERGGRAQIYKFDFNTRTTERLTYQGQ 328 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLI 405 + +I T+ +G + + M +DGS ++ SNL ++P+ +P+G +I Sbjct: 329 MNLSAEPIPGTNSVIMITRHNG--YRVARMDEDGSI--YMLTTSNLDESPSVAPNGSMVI 384 Query: 406 FSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFMD 447 +S G G + S D GR L +T S P W +D Sbjct: 385 YSTIYQGRKGLAIVSAD--GRFRANLPSTSGEISSPAWGPLLD 425 >gi|209695365|ref|YP_002263294.1| translocation protein TolB [Aliivibrio salmonicida LFI1238] gi|226705863|sp|B6EGK3|TOLB_ALISL RecName: Full=Protein tolB; Flags: Precursor gi|208009317|emb|CAQ79583.1| TolB protein precursor, periplasmic component [Aliivibrio salmonicida LFI1238] Length = 450 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 116/435 (26%), Positives = 201/435 (46%), Gaps = 42/435 (9%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP 98 NSA P+ I K+ +L +S ++S DLQRS F+ + + Q D+ Sbjct: 31 GVNSAR--PIGIVPFKWHGEGKLPQDISAIISSDLQRSGKFSPLPTNKMPQ-TPYKDADI 87 Query: 99 RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK-KFFS----------- 146 ++ W +G +VTG V + V ++L DV + GK K S Sbjct: 88 NYEAWTKMGVDAIVTGEVKVNAAGKYEVSYKLIDVVRGQLTKGKSKGLSNSGELVLTQDH 147 Query: 147 ---------SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN--SLCV 195 S RK AH ISD +Y+ +TGEKG F +RI +V VV+ ++ L + Sbjct: 148 ILVNKIATLSKTQLRKYAHRISDVVYEKLTGEKGAFLTRIAYV---VVNDKSQHPYQLRI 204 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N R + S+ I+ P +SP+ +K+AY ++++ +V++M+ + + I + Sbjct: 205 ADYDGYNERLVLKSKQPIM-SPAWSPDGKKLAYVSFENRRS-QVFIMNIYTGKR-ELIAS 261 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + APRFS +GK I + K ++ +Y V+LQ+ ++T N ++PD+ Sbjct: 262 YPRHNGAPRFSHDGKELAIVLSKTGSLQVYIVNLQTKKMRQITRGRSNNTEPFWAPDNKS 321 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 ++F SDR GK Q+Y + KR++ + + +P G I S F + Sbjct: 322 LIFTSDRGGKPQIYRVNLEDGSTKRLTWQGSQNLGGQI-TPDGKYIVMVNRSETGFNLAK 380 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS---RKKDGDTGSKLYSIDLNGR-NETLI 431 + ++L + ++P+ +P+G +I+S RK++ L + ++GR L Sbjct: 381 QDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIYRKQN-----VLSMVSIDGRFKARLP 435 Query: 432 NTPAYASDPQWVGFM 446 T P W F+ Sbjct: 436 ATNGRVRAPAWSPFL 450 >gi|134294844|ref|YP_001118579.1| translocation protein TolB [Burkholderia vietnamiensis G4] gi|166229977|sp|A4JBU1|TOLB_BURVG RecName: Full=Protein tolB; Flags: Precursor gi|134138001|gb|ABO53744.1| TolB, N-terminal domain protein [Burkholderia vietnamiensis G4] Length = 431 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/439 (24%), Positives = 190/439 (43%), Gaps = 16/439 (3%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ GG + +A V V + IA F + L +V+ +V Sbjct: 6 KLGFRALVASCLIAAGG----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVTSIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F I D+ + S+ W + GA V G V +E + +V F Sbjct: 62 RADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNREANGQYKVNFI 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 119 LYDTVKQQSLGGLSLTANDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S +G +++ IY+V+ RLT + I+ Y Sbjct: 233 -YMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTEPFY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G Q+Y M + G + ++ P SP G L+A+ + Sbjct: 292 SPDGHWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + V + + ++P+++ +G+ ++++ + G D + Sbjct: 352 GGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPTDGSAPP 411 Query: 428 ETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 412 QILSVQGGSVREPSWGPFM 430 >gi|238920738|ref|YP_002934253.1| translocation protein TolB [Edwardsiella ictaluri 93-146] gi|259533853|sp|C5BEL8|TOLB_EDWI9 RecName: Full=Protein tolB; Flags: Precursor gi|238870307|gb|ACR70018.1| Tol-Pal system beta propeller repeat protein TolB, putative [Edwardsiella ictaluri 93-146] Length = 430 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/416 (24%), Positives = 192/416 (46%), Gaps = 20/416 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 + LLVL + + +SA P+ + K++ + +++ DL+ S Sbjct: 8 MVGLLVLWASVLHAEVRIVITQGVDSAR--PIGVVPFKWMGPGTAPENIGGIIAADLRNS 65 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-D 135 FN I Q+ + + W +LG +V G+V V ++L D + Sbjct: 66 GKFNPIDASRMPQQPSAAAEVSP-AAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTSGN 124 Query: 136 RKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 ++ + + W R AHT SD++++ +TG KG F +RI +V ++ G L Sbjct: 125 PGSVLVQNQYKVTGQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELR 183 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG N +++ + L P +SP+ K+AY T+ E ++ T + A +++ Sbjct: 184 VADYDGYN-QFVVHRSAEPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLSNGAIRQVA 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F +P FS +G + ++ K ++++Y +DL S A ++T+ N ++ PDS Sbjct: 241 SFPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPTWFPDSQ 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + F SD+ G+ Q+Y M NG +R+ SQ+++A SP G + S Sbjct: 301 NLAFTSDQAGRPQIYKMNINGGVAQRLTWEGSQNQDAEV-----SPDGKFLVMVSSSAGA 355 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + + ++L + + P+ +P+G +I+S + GS L + ++GR Sbjct: 356 QHIAKLDLGTNATQVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGSVLQLVSIDGR 409 >gi|254283986|ref|ZP_04958954.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR51-B] gi|219680189|gb|EED36538.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR51-B] Length = 435 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 110/437 (25%), Positives = 203/437 (46%), Gaps = 29/437 (6%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L LVL G S +++ N +P+++ + + V+ ++ DL RS Sbjct: 10 LLALVLSAG---ASAQLQIEINQGVDNPTPIAVVPFGWQGVGTAPDDVARIIDSDLARSG 66 Query: 78 VFNLISQDSFKQKITNPD--SIPRFQDWNSLGAQVLVTGRV--IKEGKDRLRVEFRLWDV 133 F +S+ + ++ PD S F+DW +L ++ ++ GRV + G +R+E++L+D Sbjct: 67 QFAPVSR---RDMLSFPDRASDIYFRDWRALSSEYVLIGRVSGARSGDGPVRIEYQLFDA 123 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS- 192 + +I S R +AH I+D +Y+ +TG G F +R+L+VS + +N Sbjct: 124 IRQLEIDSGTVSGSVQEIRMLAHQIADAVYERLTGIPGAFATRLLYVS------VTRNPN 177 Query: 193 ------LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L + D DGA L RD I+ P +SP+ +VAY +++ +Y + R Sbjct: 178 GKDFYRLVLSDADGARPIVLFEGRDPIM-APSWSPDGSEVAYVSFETSRPA-IYRQNLRT 235 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 +++ NF+ + +P +S +G + + KD + DIY ++L S RLT I+ Sbjct: 236 G-VREQLTNFKGLNNSPVWSPDGNSMAMVLSKDGSPDIYLMNLASKKLRRLTRHYAIDTE 294 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ-GDLIAFTK 365 ++ PD ++F SDR G+ Q+Y + R++ E SY Q G +A Sbjct: 295 PTWMPDGRSLLFTSDRGGRPQIYRYDLSSGQITRVT--FEGSYNARARVAQDGRNVALVH 352 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 ++ I V S+ +L S ++P+ +P+G ++++ K+D ++D Sbjct: 353 QQNGQYHIAVHDLVTSRLTILTSTSLDESPSIAPNGSIVLYATKRDDKGILGAVAVDGGV 412 Query: 426 RNETLINTPAYASDPQW 442 R + +P W Sbjct: 413 RFSLPARDGGHVQEPAW 429 >gi|262165948|ref|ZP_06033685.1| TolB protein precursor [Vibrio mimicus VM223] gi|262171199|ref|ZP_06038877.1| TolB protein precursor [Vibrio mimicus MB-451] gi|261892275|gb|EEY38261.1| TolB protein precursor [Vibrio mimicus MB-451] gi|262025664|gb|EEY44332.1| TolB protein precursor [Vibrio mimicus VM223] Length = 450 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 117/456 (25%), Positives = 209/456 (45%), Gaps = 36/456 (7%) Query: 17 LCLLLVLIG-GFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+LIG GF + A V T+ + + P++I K+ +L VS V++ DLQ Sbjct: 5 LIFVLMLIGTGFTNVANAALELVITDGIDSARPIAIIPFKWEGGTKLPEDVSAVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD-- 132 RS F+ + Q + + + F W SLG L+TG + + + + ++L D Sbjct: 65 RSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSLGVDSLLTGTITQNAEGSYVISYQLVDIV 123 Query: 133 ------------------VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDF 173 V + ++ K + P S R+ AH I+D +Y+ +TGE+G F Sbjct: 124 RGQLTQGQSKALSPDGQLVLSKDHVLFNKVATVPPSRMREYAHRIADLVYEELTGERGAF 183 Query: 174 NSRILFVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ Sbjct: 184 LTRIAYV---VVNDKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + +++M+ + K + +F APRFS +GK + + K + +Y++DL + Sbjct: 240 QNGQA-EIFMMNIYTGQRDK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLAT 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + +T+ N + PD ++F SDR GK Q+Y + + KR++ + Sbjct: 298 RRLKEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSDGATKRLTWQGSQNLGG 357 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +P G + S F + + + ++L + ++P+ +P+G +I+S + Sbjct: 358 QI-TPDGKFLVMVNRSDSGFNLAKLDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYN 416 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + SID GR L T P W F+ Sbjct: 417 KANVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|119944498|ref|YP_942178.1| TolB domain-containing protein [Psychromonas ingrahamii 37] gi|119863102|gb|ABM02579.1| TolB, N-terminal domain protein [Psychromonas ingrahamii 37] Length = 437 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 109/446 (24%), Positives = 212/446 (47%), Gaps = 24/446 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L + ++++ + + N+A P+++ K++ E G SE+++ D Sbjct: 3 LRLFLSISMIILSSQASARLEILITEGVNTAR--PIAVIPFKWLGDGEKPGNFSEIIAAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK-DRLRVEFRLW 131 LQRS F+ + + + + + W+ +G + L+ G V + + V + L Sbjct: 61 LQRSGQFSPLPIEQMPNTPSKSLGL-DYALWHKMGIEALLMGEVSPSPEAGKYIVTYELV 119 Query: 132 DV-------KDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 DV D I+ ++ + R+ AH ISD Y+ +TGEKG F +RI +++ Sbjct: 120 DVVAGNANIADYSPILESRRGTVNKTQLRRFAHRISDVAYEKLTGEKGVFLTRIAYIAVD 179 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 S L + D DG N + + S+ Q + P +SP+ +K+AY +++ VY+ D Sbjct: 180 RKSDY-PYQLRISDYDGYNEKLILRSK-QPIMSPTWSPDGRKLAYVSFEHRRS-EVYIQD 236 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + + +F + +P +S +GK I + KD +IY++++QS A R+TN I Sbjct: 237 LYSQKR-ELMTSFPKINGSPSWSPDGKSLAIVLSKDGQPEIYTLEIQSKALRRITNNRAI 295 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + ++SPD + + F S R G Q+Y + KR++ + + + + +L+ Sbjct: 296 DTEPNWSPDGNSLTFTSTRGGGPQIYQVDLQSKVTKRLTWEGDLNLGGAITPDGANLVLV 355 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 ++ G + I + R L + ++P+ +P+G +I+S G G L S+D Sbjct: 356 SRLDG-NYKIAAQDLASGELRTLTKTHLDESPSVAPNGSMIIYSTVYKGSQGLALVSMD- 413 Query: 424 NGRNETLINTPAYASD---PQWVGFM 446 GR + N PA + + P W F+ Sbjct: 414 -GRFKA--NIPAQSGEVKSPAWSPFL 436 >gi|117920972|ref|YP_870164.1| translocation protein TolB [Shewanella sp. ANA-3] gi|166988085|sp|A0KY89|TOLB_SHESA RecName: Full=Protein tolB; Flags: Precursor gi|117613304|gb|ABK48758.1| TolB, N-terminal domain protein [Shewanella sp. ANA-3] Length = 442 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 106/398 (26%), Positives = 189/398 (47%), Gaps = 25/398 (6%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++VV DL RS F + + Q+ + W ++GA+ +V G V G D+ Sbjct: 54 IADVVMSDLIRSGTFKPLDELGLPQRGIGALAQFDASAWANVGAEAVVVGSVKPYGTDQF 113 Query: 125 RVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG +G Sbjct: 114 LVSFDLIDLVKAQNQALKGPTSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRG 173 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V VV+ K SL + D DG N + L S + L P +SP+ +++AY Sbjct: 174 AFLTRISYV---VVNHTQKAAYSLMIADYDGYNEQMLLRSPEP-LMSPSWSPDGRRLAYV 229 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +++++ +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ Sbjct: 230 SFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPTFSPDGKSLAVTLSKDGQPEIYVIDI 287 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + A +R+TN I+ S+ PD ++F S+R G+ QLY + N R + + E + Sbjct: 288 ATKAAKRITNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNL 347 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 348 GGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTT 406 Query: 410 KDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L ++ +GR L P W F+ Sbjct: 407 YQGK--QVLAAVSTDGRFKARLPVGQGEVKSPSWSPFL 442 >gi|307728551|ref|YP_003905775.1| Tol-Pal system beta propeller repeat-containing protein TolB [Burkholderia sp. CCGE1003] gi|307583086|gb|ADN56484.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1003] Length = 430 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 104/442 (23%), Positives = 203/442 (45%), Gaps = 23/442 (5%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L ++ + L+ +GG + +A + V + IA F + +VS +V Sbjct: 6 KLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVSTIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 +DLQRS F I D+ + S+ W + GA V G V + + V F+ Sbjct: 62 RQDLQRSGKFTNI--DAGSAPVPETASV-DLGSWKAKGANAFVAGSVNRLPNGQYEVRFK 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 119 LYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPTGR- 231 Query: 250 PKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 RI + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 232 --RIVVADQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 ++SPD I F SDR G+ Q+Y M + G + ++ P SP G +A+ Sbjct: 290 TFSPDGQTIYFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYIS 349 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ +G Sbjct: 350 RVGGGFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVSTDG 407 Query: 426 RNETLINTPAYA-SDPQWVGFM 446 R +++ + +P W FM Sbjct: 408 RTRQVLSVQGGSVREPSWGPFM 429 >gi|323524838|ref|YP_004226991.1| Tol-Pal system beta propeller repeat-containing protein TolB [Burkholderia sp. CCGE1001] gi|323381840|gb|ADX53931.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1001] Length = 430 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 104/442 (23%), Positives = 202/442 (45%), Gaps = 23/442 (5%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L ++ + L+ +GG + +A + V + IA F + +VS +V Sbjct: 6 KLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVSTIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 +DLQRS F I D+ + S+ W + GA V G V + + V F+ Sbjct: 62 RQDLQRSGKFTNI--DAGSAPVPETASV-DLGSWKAKGANAFVAGSVNRLPNGQYEVRFK 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 119 LYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPTGR- 231 Query: 250 PKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 RI + + AP +S +G+ +++ + I++V+ RLT I+ Sbjct: 232 --RIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGTGLRRLTQGSSIDTEP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 ++SPD I F SDR G+ Q+Y M + G + ++ P SP G +A+ Sbjct: 290 TFSPDGQTIYFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYIS 349 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ +G Sbjct: 350 RVGGAFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVSTDG 407 Query: 426 RNETLINTPAYA-SDPQWVGFM 446 R +++ + +P W FM Sbjct: 408 RTRQVLSVQGGSVREPSWGPFM 429 >gi|261211900|ref|ZP_05926187.1| TolB protein precursor [Vibrio sp. RC341] gi|260839250|gb|EEX65882.1| TolB protein precursor [Vibrio sp. RC341] Length = 450 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 115/456 (25%), Positives = 207/456 (45%), Gaps = 36/456 (7%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+LIG + +A +++ + P++I K+ +L +S V++ DLQ Sbjct: 5 LVFILMLIGTSMTSVANAALELVITDGIDSARPIAIIPFKWEGGTKLPEDISGVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD-- 132 RS F+ + Q + + + F W SLG L+TG + + + + ++L D Sbjct: 65 RSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSLGVDSLLTGTITQNAEGSYVISYQLVDIV 123 Query: 133 ------------------VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDF 173 V + ++ K + PAS R+ AH I+D +Y+ +TGE+G F Sbjct: 124 RGQLTQGQSKALSSDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAF 183 Query: 174 NSRILFVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ Sbjct: 184 LTRIAYV---VVNDKDPYPYQLRISDYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + +Y+M+ + K + +F APRFS +GK + + K + +Y++DL + Sbjct: 240 QNGQA-EIYMMNIYSGQRDK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLAT 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + +T+ N + PD ++F SDR GK Q+Y + + KRI+ + Sbjct: 298 RRLKEVTDGRANNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSDGATKRITWQGSQNLGG 357 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +P G + S F + + ++L + ++P+ +P+G +I+S + Sbjct: 358 QI-TPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYN 416 Query: 412 GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + SID GR L T P W F+ Sbjct: 417 KANVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|221201006|ref|ZP_03574046.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2M] gi|221206542|ref|ZP_03579555.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2] gi|221214396|ref|ZP_03587367.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD1] gi|221165653|gb|EED98128.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD1] gi|221173851|gb|EEE06285.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2] gi|221178856|gb|EEE11263.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2M] Length = 431 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 107/442 (24%), Positives = 192/442 (43%), Gaps = 16/442 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAG----SAANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I D+ + S+ W + GA V G V +EG + ++ Sbjct: 59 SIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNREGNGQYKI 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLSANDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G +++ IYSV+ RLT + I+ Sbjct: 230 GRR-YMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNSNGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 PFYSPDGHWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G F + V + + ++P+++ +G+ ++++ + G D + Sbjct: 349 SRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPSDGS 408 Query: 425 GRNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 APPQILSVQGGSVREPSWGPFM 430 >gi|170691331|ref|ZP_02882496.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia graminis C4D1M] gi|170143536|gb|EDT11699.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia graminis C4D1M] Length = 430 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 105/442 (23%), Positives = 202/442 (45%), Gaps = 23/442 (5%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L ++ + L+ GG + +A + V + IA F + +VS +V Sbjct: 6 KLGLRTLVASCLIAAGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVSTIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 +DLQRS F I D+ + S+ W + GA V G V + + V F+ Sbjct: 62 RQDLQRSGKFTNI--DAGSAPVPETASV-DLGSWKAKGANAFVAGSVNRLPNGQYEVRFK 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D + + G S + R AH ++D IY + G +G F +R+ +V +S Sbjct: 119 LYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGAFATRLSYVIKSGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG + ++ S + + P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQDA-HIALSSPEPIISPAWSPDGTKVAYVSFEKKKPI-VYIHDLPTGR- 231 Query: 250 PKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 RI + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 232 --RIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 ++SPD I F SDR G+ Q+Y M + G + ++ P SP G +A+ Sbjct: 290 TFSPDGQSIYFTSDRGGQPQIYKMSAQGESAGGAQRVTFTGSYNTSPRVSPDGKQLAYIS 349 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ +G Sbjct: 350 RVGGGFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYATQVNGR--GVLAAVSTDG 407 Query: 426 RNETLINTPAYA-SDPQWVGFM 446 R +++ + +P W FM Sbjct: 408 RTRQVLSVQGGSVREPSWGPFM 429 >gi|52841801|ref|YP_095600.1| TolB colicin import protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|67461928|sp|Q5ZV69|TOLB_LEGPH RecName: Full=Protein tolB; Flags: Precursor gi|52628912|gb|AAU27653.1| TolB colicin import protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 419 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 117/410 (28%), Positives = 193/410 (47%), Gaps = 30/410 (7%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 S + IA F S + ++ V+ DL S F +IS Q + S+ + Sbjct: 30 SALPIAINSFGS-NAAAQEIGNVIENDLTISGQFKIISG---PQGANSQSSVSTLRQ--- 82 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 LGA +VTGRV + G +R+ V F L D I+ K F A+ R +AH ISD++YQ Sbjct: 83 LGADSVVTGRVNQVG-NRIEVSFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQ 141 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TGE+G F++RI ++S G + SL V D DG N + L S + I+ P +SPN + Sbjct: 142 KLTGERGIFSTRIAYISVQRNGGRSRYSLEVADADGHNPQSLLVSSEPIM-SPSWSPNGK 200 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++Y +++ + + + ++ +R I +F + AP +S +G+ + + K Sbjct: 201 SISYVSFEKK---KAEIFTVSVETGQRRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPK 257 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS- 342 IY VDL S + ++LT I+ YSPD ++F S R G Q+Y + R++ Sbjct: 258 IYDVDLSSGSMKQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTF 317 Query: 343 ---QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 + ASY +P I +F IGV G L ++P+ SP Sbjct: 318 EGNYNARASY-----TPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSP 372 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 + R ++++ + D G L + ++GR + PA D P W ++ Sbjct: 373 NSRLVLYATRYQ-DRG-VLGIVSIDGR--IRMRLPAREGDVQEPAWSPYL 418 >gi|22126931|ref|NP_670354.1| translocation protein TolB [Yersinia pestis KIM 10] gi|45440866|ref|NP_992405.1| translocation protein TolB [Yersinia pestis biovar Microtus str. 91001] gi|51595503|ref|YP_069694.1| translocation protein TolB [Yersinia pseudotuberculosis IP 32953] gi|108806599|ref|YP_650515.1| translocation protein TolB [Yersinia pestis Antiqua] gi|108813034|ref|YP_648801.1| translocation protein TolB [Yersinia pestis Nepal516] gi|145599837|ref|YP_001163913.1| translocation protein TolB [Yersinia pestis Pestoides F] gi|149366876|ref|ZP_01888910.1| TolB colicin import protein [Yersinia pestis CA88-4125] gi|153948506|ref|YP_001401831.1| translocation protein TolB [Yersinia pseudotuberculosis IP 31758] gi|162418362|ref|YP_001605922.1| translocation protein TolB [Yersinia pestis Angola] gi|165924647|ref|ZP_02220479.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. F1991016] gi|165938286|ref|ZP_02226844.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. IP275] gi|166011590|ref|ZP_02232488.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. E1979001] gi|166211563|ref|ZP_02237598.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399720|ref|ZP_02305238.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419672|ref|ZP_02311425.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424139|ref|ZP_02315892.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025178|ref|YP_001721683.1| translocation protein TolB [Yersinia pseudotuberculosis YPIII] gi|186894556|ref|YP_001871668.1| translocation protein TolB [Yersinia pseudotuberculosis PB1/+] gi|218928292|ref|YP_002346167.1| translocation protein TolB [Yersinia pestis CO92] gi|229841061|ref|ZP_04461220.1| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843165|ref|ZP_04463311.1| periplasmic protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894002|ref|ZP_04509188.1| periplasmic protein [Yersinia pestis Pestoides A] gi|229903474|ref|ZP_04518587.1| periplasmic protein [Yersinia pestis Nepal516] gi|270487254|ref|ZP_06204328.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis KIM D27] gi|294503129|ref|YP_003567191.1| translocation protein TolB precursor [Yersinia pestis Z176003] gi|32699710|sp|Q8ZGZ1|TOLB_YERPE RecName: Full=Protein tolB; Flags: Precursor gi|67461941|sp|Q66D90|TOLB_YERPS RecName: Full=Protein tolB; Flags: Precursor gi|118574601|sp|Q1CAF2|TOLB_YERPA RecName: Full=Protein tolB; Flags: Precursor gi|118574602|sp|Q1CFM9|TOLB_YERPN RecName: Full=Protein tolB; Flags: Precursor gi|166229995|sp|A4TNS8|TOLB_YERPP RecName: Full=Protein tolB; Flags: Precursor gi|166988087|sp|A7FKQ3|TOLB_YERP3 RecName: Full=Protein tolB; Flags: Precursor gi|226705901|sp|B2K8G1|TOLB_YERPB RecName: Full=Protein tolB; Flags: Precursor gi|226705902|sp|A9R2G2|TOLB_YERPG RecName: Full=Protein tolB; Flags: Precursor gi|226705903|sp|B1JG47|TOLB_YERPY RecName: Full=Protein tolB; Flags: Precursor gi|21959970|gb|AAM86605.1|AE013906_9 periplasmic protein [Yersinia pestis KIM 10] gi|45435724|gb|AAS61282.1| TolB colicin import protein [Yersinia pestis biovar Microtus str. 91001] gi|51588785|emb|CAH20399.1| TolB colicin import protein [Yersinia pseudotuberculosis IP 32953] gi|108776682|gb|ABG19201.1| TolB colicin import protein [Yersinia pestis Nepal516] gi|108778512|gb|ABG12570.1| TolB colicin import protein [Yersinia pestis Antiqua] gi|115346903|emb|CAL19790.1| TolB colicin import protein [Yersinia pestis CO92] gi|145211533|gb|ABP40940.1| TolB colicin import protein [Yersinia pestis Pestoides F] gi|149291250|gb|EDM41325.1| TolB colicin import protein [Yersinia pestis CA88-4125] gi|152960001|gb|ABS47462.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pseudotuberculosis IP 31758] gi|162351177|gb|ABX85125.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis Angola] gi|165913664|gb|EDR32283.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. IP275] gi|165923707|gb|EDR40839.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. F1991016] gi|165989538|gb|EDR41839.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. E1979001] gi|166207334|gb|EDR51814.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962413|gb|EDR58434.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050428|gb|EDR61836.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056988|gb|EDR66751.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751712|gb|ACA69230.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pseudotuberculosis YPIII] gi|186697582|gb|ACC88211.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pseudotuberculosis PB1/+] gi|229679244|gb|EEO75347.1| periplasmic protein [Yersinia pestis Nepal516] gi|229689512|gb|EEO81573.1| periplasmic protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697427|gb|EEO87474.1| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703887|gb|EEO90900.1| periplasmic protein [Yersinia pestis Pestoides A] gi|262361165|gb|ACY57886.1| translocation protein TolB precursor [Yersinia pestis D106004] gi|262365278|gb|ACY61835.1| translocation protein TolB precursor [Yersinia pestis D182038] gi|270335758|gb|EFA46535.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis KIM D27] gi|294353588|gb|ADE63929.1| translocation protein TolB precursor [Yersinia pestis Z176003] gi|320014264|gb|ADV97835.1| periplasmic protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 430 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 187/403 (46%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D I+ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT+SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTN-GGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANGAIRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 254 DGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G + +G I + Sbjct: 314 VYKVNINGGVPQRITWEGSQNQNADV-----SPDGKFLVLVSSNGGAQHIAKQDLETGAV 368 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + GS L + +GR Sbjct: 369 QVLTDTLLDETPSIAPNGTMVIYSSTQ--GLGSVLQLVSTDGR 409 >gi|218780986|ref|YP_002432304.1| hypothetical protein Dalk_3146 [Desulfatibacillum alkenivorans AK-01] gi|218762370|gb|ACL04836.1| WD40 domain protein beta Propeller [Desulfatibacillum alkenivorans AK-01] Length = 442 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 174/349 (49%), Gaps = 22/349 (6%) Query: 100 FQDWNSLGAQVLVTGRV-IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI 158 F +W S+GA LVTG + +++G L +E RL+DV + I+GK++ RK+ Sbjct: 103 FANWVSIGADHLVTGGLDLRDGV--LVLELRLFDVPRNRLIVGKRYKGRVEDMRKMIRRF 160 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 +I +T +G F ++I FVS +G + + DG + + LT S +I P Sbjct: 161 CVEIVTELTDSRGVFGTKIAFVS----NGPGNKEIFACEYDGFDPQQLT-SGSKIALSPA 215 Query: 219 FSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +S + +AY +Y D E +R + A K I N RF+ A +S Sbjct: 216 WSGDGTHMAYVSYADGPPEIFIRNLAQKRGVKVAYKGI-NVTPAWDPTRFA---LAATLS 271 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D+ +IYS+ ++LTN I++S SYSPD ++ F S+R G Q+Y+M+ + Sbjct: 272 LNGDQ--EIYSLTGNGKIIKKLTNNWGIDVSPSYSPDGKRMAFVSNRGGSPQIYIMELDT 329 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQA 394 R++ D + + P +SP+GD IA+ F + ++ DG+ +RL + + Sbjct: 330 GQTSRVTFDGKYNS-APAFSPRGDRIAYCGMVDGTFDVFTVRTDGTDLQRLTDHPGDDEE 388 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 P+WSP G + FS ++G +K+Y + +G ++ L+ + P W Sbjct: 389 PSWSPDGTLIAFSTTREGK--AKIYVMTSHGTDQRKLLELEGAQTQPAW 435 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 7/142 (4%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRALI 274 P +SP+ +++A+ + + ++Y+M+ + + G + S AP FS G R Sbjct: 301 PSYSPDGKRMAFVS-NRGGSPQIYIMELDTGQTSRVTFDGKYNS---APAFSPRGDRIAY 356 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 D D+++V +RLT+ + S+SPD + I F + REGK ++YVM S+ Sbjct: 357 CGMVDGTFDVFTVRTDGTDLQRLTDHPGDDEEPSWSPDGTLIAFSTTREGKAKIYVMTSH 416 Query: 335 GSDQKRISQDKEASYFDPVWSP 356 G+DQ+++ + E + P WSP Sbjct: 417 GTDQRKL-LELEGAQTQPAWSP 437 >gi|28897834|ref|NP_797439.1| translocation protein TolB [Vibrio parahaemolyticus RIMD 2210633] gi|153838026|ref|ZP_01990693.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ3810] gi|260361765|ref|ZP_05774790.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus K5030] gi|260876994|ref|ZP_05889349.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AN-5034] gi|260899065|ref|ZP_05907506.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus Peru-466] gi|260900754|ref|ZP_05909149.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ4037] gi|32699696|sp|Q87QT9|TOLB_VIBPA RecName: Full=Protein tolB; Flags: Precursor gi|28806047|dbj|BAC59323.1| TolB protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748560|gb|EDM59419.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ3810] gi|308089165|gb|EFO38860.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus Peru-466] gi|308093918|gb|EFO43613.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AN-5034] gi|308110191|gb|EFO47731.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ4037] gi|308113266|gb|EFO50806.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus K5030] Length = 450 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 118/461 (25%), Positives = 205/461 (44%), Gaps = 47/461 (10%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L + VL+G + A V T+ + + P+++ K+ L +S V++ DLQR Sbjct: 6 LLGMFVLLGSLTNVAHAALELVITDGIDSARPIAVVPFKWEGSQPLPTDISAVIASDLQR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F+ + + Q N + F W SLG L+TG + + + V ++L DV Sbjct: 66 SGKFSPVPTNKMPQTPFNESEV-NFDSWTSLGVDALLTGSIKQNEQGDYVVNYQLVDVV- 123 Query: 136 RKQIIGKK-----------------FFSSPAS-----WRKIAHTISDDIYQSITGEKGDF 173 R Q+ G + F+ A+ R+ AH ISD +Y+ +TGE+G F Sbjct: 124 RGQLTGGQSKALGSDGELVLSKDHVLFNKVATVKGPRMREYAHRISDLVYEQLTGERGAF 183 Query: 174 NSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L V D DG N R + S+ Q L P +SP+ QK+AY ++ Sbjct: 184 MTRIAYV---VVNDKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYVSF 239 Query: 232 DDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + I+ +Y + +I P+ G APRFS +G + + + K + +Y+ Sbjct: 240 QNGQAEIFIMNIYTGEREKITSYPRHNG-------APRFSPDGNKLALVLSKTGTLQVYT 292 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 DL++ ++T + N + PD ++F SDR GK Q+Y + R++ Sbjct: 293 FDLKTRKLTQITRSRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGS 352 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + +P G + S F + + ++L + ++P+ +P+G +++ Sbjct: 353 QNLGGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVY 411 Query: 407 SRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 S + + SID GR L T P W F+ Sbjct: 412 SSIYNKKNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|161504090|ref|YP_001571202.1| translocation protein TolB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865437|gb|ABX22060.1| hypothetical protein SARI_02188 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 434 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/415 (23%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 23 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 82 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V V ++L D ++ + + Sbjct: 83 QPATAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 141 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 142 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 199 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 200 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 257 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 258 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 317 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 318 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 377 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 378 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 432 >gi|268590336|ref|ZP_06124557.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rettgeri DSM 1131] gi|291314245|gb|EFE54698.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rettgeri DSM 1131] Length = 430 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 103/393 (26%), Positives = 184/393 (46%), Gaps = 24/393 (6%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI-TNPDSI 97 NSA P+ + K+ +V ++V DL+ S FN I Q+ T + I Sbjct: 30 GVNSAQ--PIGVVPFKWSGAGAPPQEVGQIVGADLRNSGKFNPIEPSRMPQQPGTASEVI 87 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKKFFSSPASW-RKIA 155 P + W +LG +V G+V V ++L DV + ++ + + W R A Sbjct: 88 P--EAWTALGINAVVVGQVQPAADGSFVVSYQLVDVAANPGAVLSQNQYKVTKEWLRYAA 145 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQI 213 HT SD++++ +TG +G F +RI ++ VV+ G L V D DG N ++ + Sbjct: 146 HTASDEVFEKLTGIRGAFRTRIAYI---VVNKGGQYPYELRVSDYDGFN-QFTVHRSPEP 201 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L P +SP+ +K+AY T++ ++ T A +++ +F AP FS +G + Sbjct: 202 LMSPAWSPDGEKLAYVTFESGS--SALVIQTLSTGAVRQVASFPRHNGAPAFSPDGTKLA 259 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 ++ K ++++Y +DL S ++T+ N S+ PDS +V+ SD+ G+ Q+Y M Sbjct: 260 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTSDQAGRPQIYKMNI 319 Query: 334 NGSDQKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 NG +R+S Q+++A SP G + G + + + L + Sbjct: 320 NGGSPERVSWEGTQNQDADV-----SPDGTFLVMVSSGGGQQHVAKQDLATNNVEFLTKT 374 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + P+ +P+G +I+S + T +L S D Sbjct: 375 FLDETPSIAPNGTMVIYSSSQGLGTILQLVSTD 407 >gi|167554282|ref|ZP_02348023.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321483|gb|EDZ09322.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 431 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/415 (23%), Positives = 184/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V V ++L D ++ + + Sbjct: 80 QPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 138 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R +HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 139 KQWLRYASHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 196 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 197 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 254 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 255 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 314 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 315 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 374 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 375 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 429 >gi|269103008|ref|ZP_06155705.1| TolB protein precursor [Photobacterium damselae subsp. damselae CIP 102761] gi|268162906|gb|EEZ41402.1| TolB protein precursor [Photobacterium damselae subsp. damselae CIP 102761] Length = 449 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 119/464 (25%), Positives = 209/464 (45%), Gaps = 51/464 (10%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCL+L+ + F + + +SA P+++ K+ +L +S VV+ DLQ Sbjct: 6 MGLCLMLLTVSQFARAELELVITDGVDSAR--PIAVVPFKWEGQGKLPTDISAVVASDLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD-V 133 RS F+ + Q+ ++ I + W +G LV G V ++ V+++L D V Sbjct: 64 RSGKFSPVPVAKMPQQPSDESQI-NYNAWTQMGVDALVMGTVSQDANGNYVVQYQLIDLV 122 Query: 134 KDRKQ-------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 K + Q ++ + P R+ AH ISD +YQ +TGE+G F Sbjct: 123 KGQLQSKQTTADANGQVVTEKNYILVNNRATVKPNRLRQYAHRISDVVYQKLTGERGAFL 182 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +V+ S L V D DG N R + S+ Q + P +SP+ K+AY ++++ Sbjct: 183 TRIAYVAMEEKSKF-PYQLRVADYDGYNERTVLKSQ-QPIMSPAWSPDGSKLAYVSFENN 240 Query: 235 DILRVYLMD----TR--IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 ++Y+M+ TR + P+ G +PRFS +G + + + K ++ IY D Sbjct: 241 KA-QIYIMNIYKGTRELVSDYPRHNG-------SPRFSPDGSKLALVLSKSGSLQIYIKD 292 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY-VMQSNGSDQKRISQDKEA 347 L + ++T N + P + ++F SDR GK Q+Y V ++G Q+ Q + Sbjct: 293 LNTKQLTQVTRGRANNTEPFWDPTGNSLIFTSDRGGKPQIYRVNLADGQTQRLTWQGSQN 352 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +P G + S + I ++L + ++P+ +P+G +I+S Sbjct: 353 --LGGQLTPDGRYLVMVNRSDTGYNIAKQDLKTGAVQVLTKTFLDESPSIAPNGSMIIYS 410 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASD----PQWVGFMD 447 L SID GR + + + ASD P W F++ Sbjct: 411 SSIGNSNELSLVSID--GRFKARLPS---ASDRVRSPAWGPFLN 449 >gi|326622474|gb|EGE28819.1| translocation protein TolB precursor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627053|gb|EGE33396.1| translocation protein TolB precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 434 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/415 (23%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 23 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 82 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V V ++L D ++ + + Sbjct: 83 QPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 141 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 142 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 199 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 200 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 257 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 258 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 317 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 318 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 377 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 378 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 432 >gi|206575815|ref|YP_002239638.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae 342] gi|290510464|ref|ZP_06549834.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. 1_1_55] gi|226705885|sp|B5XZC1|TOLB_KLEP3 RecName: Full=Protein tolB; Flags: Precursor gi|206564873|gb|ACI06649.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae 342] gi|289777180|gb|EFD85178.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. 1_1_55] Length = 430 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 103/415 (24%), Positives = 181/415 (43%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + ++ V +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNPLDRSRLPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK--QIIGKKFFSS 147 + T+ + + W++LG +V G+V +V ++L D + F + Sbjct: 79 QPTSAQEV-QPAAWSALGIDAVVVGQVTSNPDGSYQVAYQLVDTGGAPGTTLAQGSFKVT 137 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R AH SD +++ +TG KG F +RI +V + G L V D DG N ++L Sbjct: 138 KQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQFPYELRVSDYDGYN-QFLV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A ++I +F AP FS Sbjct: 196 HRSSQPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANGAVRQIASFPQHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++TN N S+ PDS + F SD+ G+ Q Sbjct: 254 DGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTSDQAGRPQ 313 Query: 328 LYVMQSNGSDQKRIS--------------------------------QDKEA-------- 347 +Y + NG +RI+ QD EA Sbjct: 314 VYKVNINGGTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAGGVQVLSS 373 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 374 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|153820467|ref|ZP_01973134.1| tolB protein [Vibrio cholerae NCTC 8457] gi|126508988|gb|EAZ71582.1| tolB protein [Vibrio cholerae NCTC 8457] Length = 382 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 175/351 (49%), Gaps = 32/351 (9%) Query: 17 LCLLLVLIG-GFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+LIG GF + A V T+ + + P++I K+ +L VS V++ DLQ Sbjct: 5 LVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS F+ + Q + + + F W S+G L+TG + + + + ++L D+ Sbjct: 65 RSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIV 123 Query: 134 -------------KDRKQIIGK------KFFSSPAS-WRKIAHTISDDIYQSITGEKGDF 173 +D + ++ K K + PAS R+ AH I+D +Y+ +TGE+G F Sbjct: 124 RGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAF 183 Query: 174 NSRILFVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ Sbjct: 184 LTRIAYV---VVNDKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSF 239 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL + Sbjct: 240 QNGQA-EIYMMNIYSGKR-EKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLAT 297 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +T+ N + PD ++F SDR GK Q+Y + +G + KR++ Sbjct: 298 RRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLT 348 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +S ++SPD + + S + G+ ++Y+M +G +K S + P +SP G +A Sbjct: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNG--APRFSPDGKTLAL 280 Query: 364 TKFSGEKFAIGVMKKDGSQERLL---VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + M D + RL SN P W P G+SLIF+ + G ++Y Sbjct: 281 VLSKTGNLQVYTM--DLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGK--PQIYQ 336 Query: 421 IDLNG 425 ++L+G Sbjct: 337 VNLSG 341 >gi|113970703|ref|YP_734496.1| translocation protein TolB [Shewanella sp. MR-4] gi|114047932|ref|YP_738482.1| translocation protein TolB [Shewanella sp. MR-7] gi|122944592|sp|Q0HTY0|TOLB_SHESR RecName: Full=Protein tolB; Flags: Precursor gi|123029559|sp|Q0HHM8|TOLB_SHESM RecName: Full=Protein tolB; Flags: Precursor gi|113885387|gb|ABI39439.1| TolB, N-terminal domain protein [Shewanella sp. MR-4] gi|113889374|gb|ABI43425.1| TolB, N-terminal domain protein [Shewanella sp. MR-7] Length = 442 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 106/398 (26%), Positives = 189/398 (47%), Gaps = 25/398 (6%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++VV DL RS F + + Q+ + W ++GA+ +V G V G D+ Sbjct: 54 IADVVMSDLIRSGTFKPLDELGLPQRGIGALAQFDASAWANVGAEAVVVGSVKPYGTDQF 113 Query: 125 RVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 V F L D VK + Q + ++ S A +R+ H ISD +Y+ +TG +G Sbjct: 114 LVSFDLIDLVKAQNQALKGPTSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRG 173 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V VV+ K SL + D DG N + L S + L P +SP+ +++AY Sbjct: 174 AFLTRISYV---VVNHSQKAAYSLMIADYDGYNEQMLLRSPEP-LMSPSWSPDGRRLAYV 229 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +++++ +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ Sbjct: 230 SFENKKA-EIFVQDL-YTQVRTKVSSFPGINGAPTFSPDGKSLAVTLSKDGQPEIYVIDI 287 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + A +R+TN I+ S+ PD ++F S+R G+ QLY + N R + + E + Sbjct: 288 ATKAAKRITNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNL 347 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 348 GGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTT 406 Query: 410 KDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 G L ++ +GR L P W F+ Sbjct: 407 YQGK--QVLAAVSTDGRFKARLPVGQGEVKSPSWSPFL 442 >gi|161615018|ref|YP_001588983.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238898|ref|ZP_02663956.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240606|ref|ZP_02665538.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264358|ref|ZP_02686331.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467689|ref|ZP_02701526.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820117|ref|ZP_02832117.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443806|ref|YP_002039989.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450069|ref|YP_002044782.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470048|ref|ZP_03076032.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737053|ref|YP_002113855.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250927|ref|YP_002145709.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264907|ref|ZP_03164981.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244972|ref|YP_002214718.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390881|ref|ZP_03217492.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929894|ref|ZP_03220915.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911681|ref|ZP_04655518.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364382|gb|ABX68150.1| hypothetical protein SPAB_02778 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402469|gb|ACF62691.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408373|gb|ACF68592.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456412|gb|EDX45251.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712555|gb|ACF91776.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629207|gb|EDX48575.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214630|gb|ACH52027.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243162|gb|EDY25782.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288350|gb|EDY27731.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939488|gb|ACH76821.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603326|gb|EDZ01872.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320888|gb|EDZ06089.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205339859|gb|EDZ26623.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343003|gb|EDZ29767.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347159|gb|EDZ33790.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312911775|dbj|BAJ35749.1| tol-pal system protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226327|gb|EFX51378.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615818|gb|EFY12736.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621377|gb|EFY18233.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623634|gb|EFY20472.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628904|gb|EFY25685.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634886|gb|EFY31616.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636586|gb|EFY33290.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641771|gb|EFY38405.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647827|gb|EFY44307.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651359|gb|EFY47741.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652660|gb|EFY49009.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658641|gb|EFY54902.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664930|gb|EFY61121.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668401|gb|EFY64557.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322675251|gb|EFY71327.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|323129060|gb|ADX16490.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191722|gb|EFZ76975.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200616|gb|EFZ85691.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202287|gb|EFZ87335.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205444|gb|EFZ90410.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212128|gb|EFZ96953.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216147|gb|EGA00876.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221362|gb|EGA05781.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226785|gb|EGA10976.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230999|gb|EGA15115.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234168|gb|EGA18257.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238137|gb|EGA22195.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243572|gb|EGA27590.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247403|gb|EGA31362.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251392|gb|EGA35264.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256485|gb|EGA40217.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260624|gb|EGA44233.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264695|gb|EGA48197.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270959|gb|EGA54394.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 431 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/415 (23%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V V ++L D ++ + + Sbjct: 80 QPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 138 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 139 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 196 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 197 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 254 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 255 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 314 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 315 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 374 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 375 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 429 >gi|16764118|ref|NP_459733.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414135|ref|YP_151210.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363057|ref|YP_002142694.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205352012|ref|YP_002225813.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856192|ref|YP_002242843.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|32699711|sp|Q8ZQT5|TOLB_SALTY RecName: Full=Protein tolB; Flags: Precursor gi|67461910|sp|Q5PCN2|TOLB_SALPA RecName: Full=Protein tolB; Flags: Precursor gi|226705890|sp|B5QX24|TOLB_SALEP RecName: Full=Protein tolB; Flags: Precursor gi|226705891|sp|B5R699|TOLB_SALG2 RecName: Full=Protein tolB; Flags: Precursor gi|226705892|sp|B5BC62|TOLB_SALPK RecName: Full=Protein tolB; Flags: Precursor gi|16419258|gb|AAL19692.1| tol protein required for outer membrane integrity [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128392|gb|AAV77898.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094534|emb|CAR60054.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205271793|emb|CAR36627.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707995|emb|CAR32284.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246011|emb|CBG23813.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992489|gb|ACY87374.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157339|emb|CBW16828.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320085019|emb|CBY94808.1| Protein tolB Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|332987685|gb|AEF06668.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 430 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/415 (23%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V V ++L D ++ + + Sbjct: 79 QPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 138 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 254 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 314 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 373 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 374 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|163802041|ref|ZP_02195937.1| translocation protein TolB precursor [Vibrio sp. AND4] gi|159174182|gb|EDP58990.1| translocation protein TolB precursor [Vibrio sp. AND4] Length = 449 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 118/462 (25%), Positives = 209/462 (45%), Gaps = 50/462 (10%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L + VL+G + A V T+ + + P+++ K+ + L +S V++ DLQR Sbjct: 6 LLGMFVLLGSLTSVAHAALELVITDGIDSARPIAVVPFKWEGSEPLPTDISAVIASDLQR 65 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F+ + + Q N + F W LG L+TG + K + V ++L DV Sbjct: 66 SGKFSPVPTNKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNFVVNYQLVDVV- 123 Query: 136 RKQIIGKK----------------FFSSPAS-----WRKIAHTISDDIYQSITGEKGDFN 174 R Q+ G K F+ A+ R+ AH ISD +Y+ +TG++G F Sbjct: 124 RGQLTGGKSKALGDGELVLSKDHILFNKVATVQGPRMREYAHRISDLVYEQLTGDRGAFM 183 Query: 175 SRILFVSESVVSGIIKNS----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 +RI +V VV+ K+S L + D DG N R + S+ Q L P +SP+ +K+AY + Sbjct: 184 TRIAYV---VVND--KDSFPYQLRISDYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVS 237 Query: 231 YDDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + + I+ +Y + +I P+ G AP+FS +G + + + K ++ +Y Sbjct: 238 FQNGQAEIFIMNIYTGEREKITSYPRHNG-------APKFSPDGSQLALVLSKTGSLQVY 290 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++DL++ ++T N + PD ++F SDR GK Q+Y + R++ Sbjct: 291 TLDLKTRKLSQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYKVDLASGSTNRLTWQG 350 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + + +P G + S F + + ++L + ++P+ +P+G +I Sbjct: 351 SQNLGGQI-TPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTQTLLDESPSIAPNGGMVI 409 Query: 406 FSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +S + + SID GR L T P W F+ Sbjct: 410 YSSIYNKKNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 449 >gi|288936479|ref|YP_003440538.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella variicola At-22] gi|288891188|gb|ADC59506.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella variicola At-22] Length = 430 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 103/415 (24%), Positives = 181/415 (43%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + ++ V +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNPLDRSRLPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK--QIIGKKFFSS 147 + T+ + + W++LG +V G+V +V ++L D + F + Sbjct: 79 QPTSAQEV-QPAAWSALGIDAVVVGQVTSNPDGSYQVAYQLVDTGGAPGTTLAQGSFKVT 137 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R AH SD +++ +TG KG F +RI +V + G L V D DG N ++L Sbjct: 138 KQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQFPYELRVSDYDGYN-QFLV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A ++I +F AP FS Sbjct: 196 HRSSQPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANGAVRQIASFPQHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++TN N S+ PDS + F SD+ G+ Q Sbjct: 254 DGAKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTSDQAGRPQ 313 Query: 328 LYVMQSNGSDQKRIS--------------------------------QDKEA-------- 347 +Y + NG +RI+ QD EA Sbjct: 314 VYKVNINGGTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLEAGGVQVLSS 373 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 374 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|24374289|ref|NP_718332.1| tolB protein [Shewanella oneidensis MR-1] gi|32699702|sp|Q8EDJ8|TOLB_SHEON RecName: Full=Protein tolB; Flags: Precursor gi|24348827|gb|AAN55776.1|AE015714_3 tolB protein [Shewanella oneidensis MR-1] Length = 442 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 106/400 (26%), Positives = 191/400 (47%), Gaps = 29/400 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++VV DL RS F + + Q+ + W ++ A+ LV G V G D+ Sbjct: 54 IADVVMSDLVRSGTFKPLDELGLPQRGIGALAQFDANAWTNVSAEALVVGSVKPYGADQF 113 Query: 125 RVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 V F L D VK + Q + ++ S +R+ H ISD +Y+ +TG +G Sbjct: 114 LVSFELIDLVKAQNQALKGSANPTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRG 173 Query: 172 DFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F +RI +V VV+ K SL + D DG N + L S + L P +SP+ +++AY Sbjct: 174 AFLTRISYV---VVNHSQKAAYSLMIADYDGYNEQMLLRSPEP-LMSPAWSPDGRRLAYV 229 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +++++ +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ Sbjct: 230 SFENKKA-EIFVQDL-YTQVRTKVSSFSGINGAPSFSPDGKSLAVTLSKDGQPEIYVIDI 287 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + A +R+TN I+ S+ PD ++F S+R G+ QLY + N R + + E + Sbjct: 288 ATKAIKRITNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNL 347 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 + +P G + F + KF I M ++L ++P+ +P+G +I+ Sbjct: 348 GGSI-TPDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTT 406 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 G L ++ +GR + + PA + P W F+ Sbjct: 407 HQGK--QVLAAVSTDGRFKARL--PAGQGEVKSPSWSPFL 442 >gi|238793897|ref|ZP_04637517.1| hypothetical protein yinte0001_25120 [Yersinia intermedia ATCC 29909] gi|238726800|gb|EEQ18334.1| hypothetical protein yinte0001_25120 [Yersinia intermedia ATCC 29909] Length = 413 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 187/403 (46%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 2 LHAEVRIEITQGVDSARPIGVVSFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 61 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D ++ + + Sbjct: 62 QPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVT 120 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 121 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 178 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 179 HRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANGAIRQVASFPRHNGAPSFSP 236 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 237 DGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 296 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G +A +G I + Sbjct: 297 VYKVNINGGAPQRITWEGSQNQNADV-----SPDGKFLALVSSNGGAQHIAKQDLETGAV 351 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + G+ L + +GR Sbjct: 352 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAVLQLVSTDGR 392 >gi|224370139|ref|YP_002604303.1| AglW [Desulfobacterium autotrophicum HRM2] gi|223692856|gb|ACN16139.1| AglW [Desulfobacterium autotrophicum HRM2] Length = 447 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 191/397 (48%), Gaps = 33/397 (8%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS--IPR----FQDWNSLGAQVLV 112 D L G+ E++ DL+ + ++ S+ I NP + I R F++W +G++++V Sbjct: 64 DRLAGEAREILVSDLEFTGYMTILDPLSY---IENPATKGITRTDLNFKNWTVIGSELVV 120 Query: 113 TGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 T +++ G D L ++ RL+D + ++GK + R++ H +I +TG+ G Sbjct: 121 TCGIVESGGD-LELKMRLFDPFTERLVVGKVYTGKVNDLRRMIHRFCSEISFHLTGKWGV 179 Query: 173 FNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F+SR+ FVS KN + V + DG N R +T + I P +S + Q +AY +Y Sbjct: 180 FSSRLAFVSTKG-----KNKEIFVAEFDGHNSRQVT-RLNSISISPAWSSDGQWLAYTSY 233 Query: 232 --DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN--GKRALISVQKDEAMDIYSV 287 + DI L+ R + NF+ M + P + A +S + D+ +IY + Sbjct: 234 AGGNPDIYIKNLIQNR-----GAVVNFKGMNITPAWIPGQFSLAAALSFENDQ--EIYLL 286 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + ++LTN+ I++S +SPD ++ F S R G Q+Y+ +R++ Sbjct: 287 TGKGRIIKKLTNSWGIDVSPCFSPDGKKMAFVSKRAGTPQVYIQDMESDTVRRLTFTGRY 346 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIF 406 + P WSP GD IA+ + + I V+ DGS +L + + P WSP + F Sbjct: 347 NT-SPAWSPDGDKIAYVGIANGEINIYVVGIDGSGVVQLTSSTGDNEDPCWSPDAGLIAF 405 Query: 407 SRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 + ++G +++Y + G + L ++P+W Sbjct: 406 TSTREGV--ARIYVMTATGGEQRRLFLMDGAQTNPEW 440 >gi|317047357|ref|YP_004115005.1| Tol-Pal system beta propeller repeat-containing protein TolB [Pantoea sp. At-9b] gi|316948974|gb|ADU68449.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. At-9b] Length = 431 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/432 (21%), Positives = 190/432 (43%), Gaps = 52/432 (12%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +++ L ++L + + N+A P+ + ++ + +V+ D Sbjct: 5 LRVTLGFFVLLWAAMLHAEVRIEITQGVNTAR--PIGVVPFQWAGPGAAPEDIGGIVAAD 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN + + Q+ T+ + + W++LG +V G+V ++ ++L D Sbjct: 63 LRNSGKFNPLDRSRLPQQPTSAQQV-QPAAWSALGIDAVVVGQVTPNADGSYQIAYQLVD 121 Query: 133 VKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + + W R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 122 TGGAPGTVLAQNSYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFP 180 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N +++ + L P +SP+ K+AY T+ E ++ T + A Sbjct: 181 YELRVSDYDGYN-QFVVHRSPEPLMSPTWSPDGSKLAYVTF--ESGKSALVIQTLANGAI 237 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ + + ++ Sbjct: 238 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQITDGRYNSTEPTWF 297 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---------------------------- 342 PDS + + SD+ G Q+Y + NG +RI+ Sbjct: 298 PDSQTLAYTSDQAGAPQIYKIGINGGAPQRITWEGAQNQDADVAADGKSMVMISSAGGAQ 357 Query: 343 ----QDKEA--------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLV 387 QD E ++ D P +P G ++ ++ G + ++ DG + RL Sbjct: 358 HVAKQDLETGAVQTLTDTFLDETPSLAPNGTMVIYSSTQGMGSVLQLVSTDGRFKARLPA 417 Query: 388 EDSNLQAPTWSP 399 D +++P WSP Sbjct: 418 TDGQVKSPAWSP 429 >gi|161525756|ref|YP_001580768.1| translocation protein TolB [Burkholderia multivorans ATCC 17616] gi|189349522|ref|YP_001945150.1| translocation protein TolB [Burkholderia multivorans ATCC 17616] gi|226705870|sp|A9AFQ0|TOLB_BURM1 RecName: Full=Protein tolB; Flags: Precursor gi|160343185|gb|ABX16271.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans ATCC 17616] gi|189333544|dbj|BAG42614.1| TolB protein [Burkholderia multivorans ATCC 17616] Length = 431 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 107/442 (24%), Positives = 191/442 (43%), Gaps = 16/442 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAG----SAANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I D+ + S+ W + GA V G V EG + ++ Sbjct: 59 SIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNHEGNGQYKI 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLSANDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G +++ IYSV+ RLT + I+ Sbjct: 230 GRR-YMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNSNGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G F + V + + ++P+++ +G+ ++++ + G D + Sbjct: 349 SRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPSDGS 408 Query: 425 GRNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 APPQILSVQGGSVREPSWGPFM 430 >gi|170701073|ref|ZP_02892050.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ambifaria IOP40-10] gi|172059754|ref|YP_001807406.1| translocation protein TolB [Burkholderia ambifaria MC40-6] gi|226705867|sp|B1YTW7|TOLB_BURA4 RecName: Full=Protein tolB; Flags: Precursor gi|170134013|gb|EDT02364.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ambifaria IOP40-10] gi|171992271|gb|ACB63190.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ambifaria MC40-6] Length = 431 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 107/439 (24%), Positives = 189/439 (43%), Gaps = 16/439 (3%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ GG + +A V V + IA F + L +V+ +V Sbjct: 6 KLGFRALVASCLIAAGG----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVTSIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F I D+ + S+ W + GA V G V +E + +V F Sbjct: 62 RADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNREANGQYKVNFI 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 119 LYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S + +++ IY+V+ RLT + I+ Y Sbjct: 233 -YMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTEPYY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G Q+Y M + G + ++ P SP G L+A+ + Sbjct: 292 SPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + V + + ++P+++ +G+ L+++ + G D + Sbjct: 352 GGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDGSAPP 411 Query: 428 ETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 412 QILSVQGGSVREPSWGPFM 430 >gi|323972027|gb|EGB67247.1| tol-Pal system beta propeller TolB [Escherichia coli TA007] Length = 431 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 188/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 20 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 76 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|317491197|ref|ZP_07949633.1| tol-Pal system beta propeller repeat protein TolB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920744|gb|EFV42067.1| tol-Pal system beta propeller repeat protein TolB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 430 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 194/417 (46%), Gaps = 17/417 (4%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 ++ + LL++ + + +HA V++ P+ + K++ + +V+ Sbjct: 6 RVAMGLLIL-----WASVLHAEVRIVITQGVDTARPIGVVPFKWMGPGSAPEDIGGIVAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I + Q+ T + W +LG +V G+V V +++ Sbjct: 61 DLRNSGKFNPIDTNRMPQQPTTVAEVTP-AAWTALGIDAVVVGQVQPSADGGYVVSYQMV 119 Query: 132 DVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + ++ + + W R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 DTSGNPGSVLSQNQYKVTKQWLRYAAHTSSDEVFEKLTGIKGAFRTRIAYVVQTN-GGQF 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N +++ Q L P +SP+ K+AY T+ E ++ T + A Sbjct: 179 PYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGKSALVIQTLSNGA 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ +F AP FS +G + ++ K ++++Y +DL S A ++T+ N S+ Sbjct: 236 IRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSGAIRQVTDGRSNNTEPSW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PDS + F SD+ G+ Q+Y + NG +R++ + + V S G + SG Sbjct: 296 FPDSQNLAFTSDQGGRPQIYKVNINGGAPERLTWEGSQNQDGDV-SSDGKFLVMVGTSGG 354 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + + ++L + P+ +P+G +I+S + GS L + +GR Sbjct: 355 SQHITKLDLGSNANQVLTSTFLDETPSIAPNGTMVIYSSTQ--GLGSVLQLVSTDGR 409 >gi|218553267|ref|YP_002386180.1| translocation protein TolB [Escherichia coli IAI1] gi|226705879|sp|B7M6B0|TOLB_ECO8A RecName: Full=Protein tolB; Flags: Precursor gi|218360035|emb|CAQ97582.1| periplasmic protein [Escherichia coli IAI1] Length = 430 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 186/417 (44%), Gaps = 56/417 (13%) Query: 32 IHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ +S S P+ + ++V + +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWVGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQ 78 Query: 90 KITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFS 146 + P S Q W++LG +V G+V V ++L D ++ + + Sbjct: 79 Q---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK 135 Query: 147 SPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N ++ Sbjct: 136 VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QF 193 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP F Sbjct: 194 VVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAF 251 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Sbjct: 252 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR 311 Query: 326 EQLYVMQSNGSDQKRI----SQDKEA---------------------------------- 347 Q+Y + NG +RI SQ+++A Sbjct: 312 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 371 Query: 348 --SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 372 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 428 >gi|322670511|gb|EFY66644.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679677|gb|EFY75718.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684847|gb|EFY80846.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] Length = 431 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 95/398 (23%), Positives = 176/398 (44%), Gaps = 50/398 (12%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+ + K+ + +V+ DL+ S FN + + Q+ + + W++L Sbjct: 37 PIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSAL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQ 164 G +V G+V V ++L D ++ + + W R HT SD++++ Sbjct: 96 GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFE 155 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG KG F +RI +V ++ G L V D DG N +++ Q L P +SP+ Sbjct: 156 KLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGS 213 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+AY T+ E ++ T + A +++ +F AP FS +G + ++ K ++++ Sbjct: 214 KLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNL 271 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI--- 341 Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M NG +RI Sbjct: 272 YVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWE 331 Query: 342 -SQDKEA------------------------------------SYFD--PVWSPQGDLIA 362 SQ+++A ++ D P +P G ++ Sbjct: 332 GSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVI 391 Query: 363 FTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ G + ++ DG + RL D +++P WSP Sbjct: 392 YSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 429 >gi|323170861|gb|EFZ56511.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli LT-68] Length = 430 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 104/426 (24%), Positives = 190/426 (44%), Gaps = 64/426 (15%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFN 80 + +++HA V++ +S S I F + +++GG +V+ DL+ S FN Sbjct: 14 LWASALHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFN 69 Query: 81 LISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK- 137 + + Q+ P S Q W++LG +V G+V V ++L D Sbjct: 70 PLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG 126 Query: 138 QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 ++ + + W R HT SD++++ +TG KG F +RI +V ++ G L V Sbjct: 127 TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVS 185 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 186 DYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASF 242 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + Sbjct: 243 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 302 Query: 317 VFESDREGKEQLYVMQSNGSDQKRI----SQDKEA------------------------- 347 F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 303 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 362 Query: 348 -----------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQ 393 ++ D P +P G ++ ++ G + ++ DG + RL D ++ Sbjct: 363 LATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 394 APTWSP 399 P WSP Sbjct: 423 FPAWSP 428 >gi|254253146|ref|ZP_04946464.1| TolB [Burkholderia dolosa AUO158] gi|124895755|gb|EAY69635.1| TolB [Burkholderia dolosa AUO158] Length = 432 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/431 (24%), Positives = 187/431 (43%), Gaps = 17/431 (3%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 CL+ G + +A V V + IA F + L +++ +V DL RS Sbjct: 16 CLIAASGG-----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQITSIVRADLARSG 70 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F I D+ + S+ W + GA V G V +E + +V F L+D ++ Sbjct: 71 KFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNREANGQYKVNFILYDTVKQQ 127 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + G ++ + R H I+D IYQ + G +G F +R+ +V ++ + L + D Sbjct: 128 SLGGLSLTANDNTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN----RYQLQISD 183 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG N R S + I+ P +SP+ KVAY +++ + + VY+ D R + + + Sbjct: 184 SDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPTGRR-YMVSDQK 240 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP +S +G +++ IYSV+ RLT + I+ YSPD I Sbjct: 241 GNNSAPAWSPDGNTLAVALSLTGNTQIYSVNANGGGLRRLTQSNSIDTEPFYSPDGRWIY 300 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGV 375 F SDR G Q+Y M + G + ++ P SP G L+A+ +G F + V Sbjct: 301 FTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRTGGGFKLYV 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + ++ ++P+++ +G+ ++++ + G D + + L Sbjct: 361 QDLQTGAANAITNTNHDESPSFAANGQYILYATQSGGRNVLAAVPSDGSAPPQILSVQGG 420 Query: 436 YASDPQWVGFM 446 +P W FM Sbjct: 421 SVREPSWGPFM 431 >gi|325522835|gb|EGD01305.1| translocation protein TolB [Burkholderia sp. TJI49] Length = 431 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 107/439 (24%), Positives = 191/439 (43%), Gaps = 16/439 (3%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ G ++ +A V V + IA F + L +V+ +V Sbjct: 6 KLGFRALVASCLIAAG----SAANAQVNVLITGVGSTQFPIATANFANEAGLPQQVTSIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F I D+ + S+ W + GA V G V +EG + +V F Sbjct: 62 RADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNREGNGQYKVNFI 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ + G ++ ++ R H I+D IYQ + G +G F +R+ +V +S Sbjct: 119 LYDTVKQQSLGGLSLTANDSTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKSGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 RYQLQISDSDGQNARIALSSTEPII-SPSWSPSGTKVAYVSFERKKPI-VYIHDLPTGHR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S +G +++ IY+V+ RLT + I+ Y Sbjct: 233 -YIVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNSTGGGLRRLTQSSSIDTEPYY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G Q+Y M + G + ++ P SP G L+A+ + Sbjct: 292 SPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYISRT 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + V + + ++P+++ +G+ ++++ + G D + Sbjct: 352 GGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPSDGSAPP 411 Query: 428 ETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 412 QILSVQGGSVREPSWGPFM 430 >gi|156934765|ref|YP_001438681.1| translocation protein TolB [Cronobacter sakazakii ATCC BAA-894] gi|156533019|gb|ABU77845.1| hypothetical protein ESA_02605 [Cronobacter sakazakii ATCC BAA-894] Length = 431 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/415 (22%), Positives = 184/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V G V ++L D ++ + + Sbjct: 80 QPATAQEV-QPAAWSALGIDAVVVGQVTPNGDGSYTVAYQLVDTGGAPGTVLAQNSYKVN 138 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 139 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 196 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 197 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 254 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + + SD+ G+ Q Sbjct: 255 DGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQTLAYTSDQAGRPQ 314 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y + NG +R+ SQ+++A Sbjct: 315 VYKVNINGGAPQRVTWEGSQNQDADISSDGKFMVMVSSNGGAQNIAKLDLATGGVQTLSS 374 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 375 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 429 >gi|260597139|ref|YP_003209710.1| translocation protein TolB [Cronobacter turicensis z3032] gi|260216316|emb|CBA29301.1| Protein tolB [Cronobacter turicensis z3032] Length = 430 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/417 (23%), Positives = 184/417 (44%), Gaps = 56/417 (13%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 78 Query: 90 KITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFS 146 + P S Q W++LG +V G+V G V ++L D ++ + + Sbjct: 79 Q---PSSAQEVQPAAWSALGIDAVVVGQVTPNGDGSYTVAYQLVDTGGAPGTVLAQNSYK 135 Query: 147 SPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N ++ Sbjct: 136 VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QF 193 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L P +SP+ KVAY T+ E ++ T + A +++ +F AP F Sbjct: 194 VVHRSPQPLMSPAWSPDGSKVAYVTF--ESGRSALVIQTLSNGAVRQVASFPRHNGAPAF 251 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + + SD+ G+ Sbjct: 252 SPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQTLAYTSDQAGR 311 Query: 326 EQLYVMQSNGSDQKRI----SQDKEA---------------------------------- 347 Q+Y + NG +R+ SQ+++A Sbjct: 312 PQVYKVNINGGAPQRVTWEGSQNQDADVSSDGKFMVMVSSNGGAQNIAKLDLVTGGVQTL 371 Query: 348 --SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 372 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 428 >gi|238893776|ref|YP_002918510.1| translocation protein TolB [Klebsiella pneumoniae NTUH-K2044] gi|262041200|ref|ZP_06014412.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329998744|ref|ZP_08303198.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. MS 92-3] gi|238546092|dbj|BAH62443.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041429|gb|EEW42488.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538571|gb|EGF64675.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. MS 92-3] Length = 431 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/415 (24%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + ++ V +V+ DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR--KQIIGKKFFSS 147 + T+ + + W++LG +V G+V + +V ++L D + F + Sbjct: 80 QPTSAQEV-QPAAWSALGIDAVVVGQVTQNPDGSYQVAYQLVDTGGAPGTTLAQGSFKVT 138 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R AH SD +++ +TG KG F +RI +V + G L V D DG N ++L Sbjct: 139 KQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQYPYELRVSDYDGYN-QFLV 196 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + + ++I +F AP FS Sbjct: 197 HRSSQPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANASVRQIASFPQHNGAPAFSP 254 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++TN N S+ PDS + F SD+ G+ Q Sbjct: 255 DGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTSDQAGRPQ 314 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y + NG +RI SQ+++A Sbjct: 315 VYKVNINGGTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLETGGVQVLSS 374 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 375 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 429 >gi|331672262|ref|ZP_08373053.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA280] gi|331070457|gb|EGI41821.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA280] Length = 430 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNVNGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|209776394|gb|ACI86509.1| periplasmic protein TolB [Escherichia coli] Length = 430 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 HLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|16759687|ref|NP_455304.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142540|ref|NP_805882.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32699709|sp|Q8Z8C0|TOLB_SALTI RecName: Full=Protein tolB; Flags: Precursor gi|25513116|pir||AH0592 tolB protein precursor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501980|emb|CAD05210.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhi] gi|29138171|gb|AAO69742.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 430 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/415 (23%), Positives = 182/415 (43%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG ++ G V V ++L D ++ + + Sbjct: 79 QPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 138 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 254 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 314 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 373 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 374 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|291281683|ref|YP_003498501.1| Protein tolB precursor [Escherichia coli O55:H7 str. CB9615] gi|290761556|gb|ADD55517.1| Protein tolB precursor [Escherichia coli O55:H7 str. CB9615] Length = 431 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 20 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 76 HLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|213051767|ref|ZP_03344645.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427709|ref|ZP_03360459.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213857527|ref|ZP_03384498.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827213|ref|ZP_06545933.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 431 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/415 (23%), Positives = 182/415 (43%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG ++ G V V ++L D ++ + + Sbjct: 80 QPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 138 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 139 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 196 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 197 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 254 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 255 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 314 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 315 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 374 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 375 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 429 >gi|320172957|gb|EFW48185.1| translocation protein TolB [Shigella dysenteriae CDC 74-1112] Length = 430 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPSAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQVRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|289674677|ref|ZP_06495567.1| translocation protein TolB [Pseudomonas syringae pv. syringae FF5] Length = 312 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 163/315 (51%), Gaps = 9/315 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDREGK 325 D S + F SDR GK Sbjct: 297 KDGSTLYFTSDRGGK 311 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%) Query: 329 YVMQSNGSDQKR---ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQER 384 Y +Q + D R + Q +E P ++P G IA+ F ++ I V D G +E+ Sbjct: 180 YTLQRSDYDGARAVTLLQSREP-ILSPRFAPDGKRIAYVSFEQKRPRIFVQHIDTGRREQ 238 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + AP WSP G L F KDG+ ++Y I+L R Sbjct: 239 ITNFEGLNGAPAWSPDGSKLAFVLSKDGN--PEIYVINLASR 278 >gi|62179322|ref|YP_215739.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484379|sp|Q57RK3|TOLB_SALCH RecName: Full=Protein tolB; Flags: Precursor gi|62126955|gb|AAX64658.1| tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiprotein peptidoglycan recycling complex (Two domains) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713793|gb|EFZ05364.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 430 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/415 (23%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V + ++L D ++ + + Sbjct: 79 QPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNIAYQLVDTGGAPGTVLAQNSYKVN 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 138 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + + +++ +F AP FS Sbjct: 196 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGSVRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 254 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 314 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 373 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 374 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|328473193|gb|EGF44041.1| translocation protein TolB [Vibrio parahaemolyticus 10329] Length = 450 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/430 (26%), Positives = 191/430 (44%), Gaps = 46/430 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ L VS V++ DLQRS F+ + Q N + F W SL Sbjct: 37 PIAVVPFKWEGTQALPTDVSAVIASDLQRSGKFSPVPTSKMPQTPFNESEV-NFDSWTSL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK-----------------FFSSPA 149 G L+TG + + + V ++L DV R Q+ G + F+ A Sbjct: 96 GVDALLTGSIKQNEQGDYVVNYQLVDVV-RGQLTGGQSKALGSDGELVLSKDHVLFNKVA 154 Query: 150 S-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN 202 + R+ AH ISD +Y+ +TGE+G F +RI +V VV+ L V D DG N Sbjct: 155 TVKGPRMREYAHRISDLVYEQLTGERGAFMTRIAYV---VVNDKDRFPYQLRVADYDGYN 211 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMD-TRIDRAPKRIGNFR 257 R + S+ Q L P +SP+ QK+AY ++ + I+ +Y + +I P+ G Sbjct: 212 ERLVLRSK-QPLMSPAWSPDGQKLAYVSFQNGQAEIFIMNIYTGEREKITSYPRHNG--- 267 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 APRFS +G + + + K + +Y+ DL++ ++T + N + PD ++ Sbjct: 268 ----APRFSPDGNKLALVLSKTGTLQVYTFDLKTRKLTQITRSRSNNTEPFWHPDGKSLI 323 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR GK Q+Y + R++ + + +P G + S F + Sbjct: 324 FTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQI-TPDGRFLVMVNRSDSGFNLAKQD 382 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + ++L + ++P+ +P+G +++S + + SID GR L T Sbjct: 383 LETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKNVLSMVSID--GRFKARLPATNGR 440 Query: 437 ASDPQWVGFM 446 P W F+ Sbjct: 441 VRAPAWSPFL 450 >gi|224582567|ref|YP_002636365.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467094|gb|ACN44924.1| translocation protein TolB precursor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 434 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/415 (23%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 23 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 82 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG +V G+V + ++L D ++ + + Sbjct: 83 QPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNIAYQLVDTGGAPGTVLAQNSYKVN 141 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 142 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVV 199 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + + +++ +F AP FS Sbjct: 200 HRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGSVRQVASFPRHNGAPAFSP 257 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q Sbjct: 258 DGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQ 317 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y M NG +RI SQ+++A Sbjct: 318 VYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSS 377 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 378 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 432 >gi|238790498|ref|ZP_04634267.1| hypothetical protein yfred0001_12280 [Yersinia frederiksenii ATCC 33641] gi|238721442|gb|EEQ13113.1| hypothetical protein yfred0001_12280 [Yersinia frederiksenii ATCC 33641] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 186/403 (46%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D ++ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANGAIRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 254 DGSKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G +A +G I Sbjct: 314 VYKVNINGGAPQRITWEGSQNQNADV-----SPDGKFLALVSSNGGAQHIAKQDLVTGAV 368 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + G+ L + +GR Sbjct: 369 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAVLQLVSTDGR 409 >gi|15800456|ref|NP_286468.1| translocation protein TolB [Escherichia coli O157:H7 EDL933] gi|15830029|ref|NP_308802.1| translocation protein TolB [Escherichia coli O157:H7 str. Sakai] gi|16128715|ref|NP_415268.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655] gi|30062097|ref|NP_836268.1| translocation protein TolB [Shigella flexneri 2a str. 2457T] gi|74311264|ref|YP_309683.1| translocation protein TolB [Shigella sonnei Ss046] gi|89107598|ref|AP_001378.1| periplasmic protein [Escherichia coli str. K-12 substr. W3110] gi|110640948|ref|YP_668676.1| translocation protein TolB [Escherichia coli 536] gi|157154962|ref|YP_001461901.1| translocation protein TolB [Escherichia coli E24377A] gi|168779235|ref|ZP_02804242.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4076] gi|168786906|ref|ZP_02811913.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC869] gi|170020915|ref|YP_001725869.1| translocation protein TolB [Escherichia coli ATCC 8739] gi|170080407|ref|YP_001729727.1| periplasmic protein [Escherichia coli str. K-12 substr. DH10B] gi|188496422|ref|ZP_03003692.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli 53638] gi|189402960|ref|ZP_03006911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4486] gi|208808867|ref|ZP_03251204.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4206] gi|208815738|ref|ZP_03256917.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4045] gi|209399861|ref|YP_002269374.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4115] gi|215485762|ref|YP_002328193.1| translocation protein TolB [Escherichia coli O127:H6 str. E2348/69] gi|217324392|ref|ZP_03440476.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. TW14588] gi|218557653|ref|YP_002390566.1| translocation protein TolB [Escherichia coli S88] gi|218688531|ref|YP_002396743.1| translocation protein TolB [Escherichia coli ED1a] gi|218694164|ref|YP_002401831.1| translocation protein TolB [Escherichia coli 55989] gi|218699112|ref|YP_002406741.1| translocation protein TolB [Escherichia coli IAI39] gi|218704067|ref|YP_002411586.1| translocation protein TolB [Escherichia coli UMN026] gi|238900005|ref|YP_002925801.1| periplasmic protein [Escherichia coli BW2952] gi|253774289|ref|YP_003037120.1| translocation protein TolB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160810|ref|YP_003043918.1| translocation protein TolB [Escherichia coli B str. REL606] gi|254791897|ref|YP_003076734.1| translocation protein TolB [Escherichia coli O157:H7 str. TW14359] gi|256021184|ref|ZP_05435049.1| translocation protein TolB [Shigella sp. D9] gi|256023657|ref|ZP_05437522.1| translocation protein TolB [Escherichia sp. 4_1_40B] gi|260842946|ref|YP_003220724.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009] gi|260853975|ref|YP_003227866.1| periplasmic protein TolB [Escherichia coli O26:H11 str. 11368] gi|260866871|ref|YP_003233273.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128] gi|293403995|ref|ZP_06647989.1| tolB [Escherichia coli FVEC1412] gi|293409124|ref|ZP_06652700.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B354] gi|293414025|ref|ZP_06656674.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B185] gi|293433008|ref|ZP_06661436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B088] gi|297520453|ref|ZP_06938839.1| translocation protein TolB [Escherichia coli OP50] gi|298379775|ref|ZP_06989380.1| tolB [Escherichia coli FVEC1302] gi|306812853|ref|ZP_07447046.1| translocation protein TolB [Escherichia coli NC101] gi|307137353|ref|ZP_07496709.1| translocation protein TolB [Escherichia coli H736] gi|307314795|ref|ZP_07594389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli W] gi|312965176|ref|ZP_07779413.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 2362-75] gi|312970819|ref|ZP_07784998.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1827-70] gi|331641241|ref|ZP_08342376.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H736] gi|331645891|ref|ZP_08346994.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M605] gi|331651748|ref|ZP_08352767.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M718] gi|331662100|ref|ZP_08363023.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA143] gi|331667107|ref|ZP_08367972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA271] gi|331676422|ref|ZP_08377119.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H591] gi|331682170|ref|ZP_08382792.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H299] gi|67473560|sp|P0A855|TOLB_ECOLI RecName: Full=Protein tolB; Flags: Precursor gi|67473563|sp|P0A856|TOLB_ECOL6 RecName: Full=Protein tolB; Flags: Precursor gi|67473564|sp|P0A857|TOLB_ECO57 RecName: Full=Protein tolB; Flags: Precursor gi|118574579|sp|Q0TJV4|TOLB_ECOL5 RecName: Full=Protein tolB; Flags: Precursor gi|118574580|sp|Q1REI5|TOLB_ECOUT RecName: Full=Protein tolB; Flags: Precursor gi|119371062|sp|Q3Z464|TOLB_SHISS RecName: Full=Protein tolB; Flags: Precursor gi|166988075|sp|A7ZJC2|TOLB_ECO24 RecName: Full=Protein tolB; Flags: Precursor gi|189035982|sp|B1IXY9|TOLB_ECOLC RecName: Full=Protein tolB; Flags: Precursor gi|226705876|sp|B7MFZ3|TOLB_ECO45 RecName: Full=Protein tolB; Flags: Precursor gi|226705877|sp|B5YRE4|TOLB_ECO5E RecName: Full=Protein tolB; Flags: Precursor gi|226705878|sp|B7NMV9|TOLB_ECO7I RecName: Full=Protein tolB; Flags: Precursor gi|226705880|sp|B1X6S1|TOLB_ECODH RecName: Full=Protein tolB; Flags: Precursor gi|226705881|sp|B7N9Y9|TOLB_ECOLU RecName: Full=Protein tolB; Flags: Precursor gi|254764839|sp|B7ULM0|TOLB_ECO27 RecName: Full=Protein tolB; Flags: Precursor gi|254764840|sp|B7LAE7|TOLB_ECO55 RecName: Full=Protein tolB; Flags: Precursor gi|254764841|sp|B7MPN1|TOLB_ECO81 RecName: Full=Protein tolB; Flags: Precursor gi|259533852|sp|C4ZWL5|TOLB_ECOBW RecName: Full=Protein tolB; Flags: Precursor gi|12513673|gb|AAG55076.1|AE005252_12 periplasmic protein involved in the tonb-independent uptake of group A colicins [Escherichia coli O157:H7 str. EDL933] gi|1786961|gb|AAC73834.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655] gi|13360234|dbj|BAB34198.1| periplasmic protein TolB [Escherichia coli O157:H7 str. Sakai] gi|30040341|gb|AAP16074.1| periplasmic protein [Shigella flexneri 2a str. 2457T] gi|73854741|gb|AAZ87448.1| periplasmic protein [Shigella sonnei Ss046] gi|85674752|dbj|BAA35406.2| periplasmic protein [Escherichia coli str. K12 substr. W3110] gi|110342540|gb|ABG68777.1| TolB protein precursor [Escherichia coli 536] gi|157076992|gb|ABV16700.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli E24377A] gi|169755843|gb|ACA78542.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli ATCC 8739] gi|169888242|gb|ACB01949.1| periplasmic protein [Escherichia coli str. K-12 substr. DH10B] gi|188491621|gb|EDU66724.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli 53638] gi|189002974|gb|EDU71960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4076] gi|189363589|gb|EDU82008.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4486] gi|189373020|gb|EDU91436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC869] gi|208728668|gb|EDZ78269.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4206] gi|208732386|gb|EDZ81074.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4045] gi|209161261|gb|ACI38694.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4115] gi|209776388|gb|ACI86506.1| periplasmic protein TolB [Escherichia coli] gi|209776390|gb|ACI86507.1| periplasmic protein TolB [Escherichia coli] gi|209776392|gb|ACI86508.1| periplasmic protein TolB [Escherichia coli] gi|209776396|gb|ACI86510.1| periplasmic protein TolB [Escherichia coli] gi|215263834|emb|CAS08172.1| periplasmic protein TolB [Escherichia coli O127:H6 str. E2348/69] gi|217320613|gb|EEC29037.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. TW14588] gi|218350896|emb|CAU96594.1| periplasmic protein [Escherichia coli 55989] gi|218364422|emb|CAR02102.1| periplasmic protein [Escherichia coli S88] gi|218369098|emb|CAR16852.1| periplasmic protein [Escherichia coli IAI39] gi|218426095|emb|CAR06913.1| periplasmic protein [Escherichia coli ED1a] gi|218431164|emb|CAR12040.1| periplasmic protein [Escherichia coli UMN026] gi|222032476|emb|CAP75215.1| Protein tolB [Escherichia coli LF82] gi|238862004|gb|ACR64002.1| periplasmic protein [Escherichia coli BW2952] gi|242376502|emb|CAQ31206.1| tolB, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4 Transport System and The Colicin A Import System [Escherichia coli BL21(DE3)] gi|253325333|gb|ACT29935.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972711|gb|ACT38382.1| translocation protein TolB precursor [Escherichia coli B str. REL606] gi|253976905|gb|ACT42575.1| translocation protein TolB precursor [Escherichia coli BL21(DE3)] gi|254591297|gb|ACT70658.1| periplasmic protein [Escherichia coli O157:H7 str. TW14359] gi|257752624|dbj|BAI24126.1| periplasmic protein TolB [Escherichia coli O26:H11 str. 11368] gi|257758093|dbj|BAI29590.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009] gi|257763227|dbj|BAI34722.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128] gi|260450106|gb|ACX40528.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli DH1] gi|281177883|dbj|BAI54213.1| TolB protein [Escherichia coli SE15] gi|281599944|gb|ADA72928.1| Protein tolB precursor [Shigella flexneri 2002017] gi|284920527|emb|CBG33589.1| colicin import protein [Escherichia coli 042] gi|291323827|gb|EFE63249.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B088] gi|291428581|gb|EFF01606.1| tolB [Escherichia coli FVEC1412] gi|291434083|gb|EFF07056.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B185] gi|291469592|gb|EFF12076.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B354] gi|294492013|gb|ADE90769.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli IHE3034] gi|298279473|gb|EFI20981.1| tolB [Escherichia coli FVEC1302] gi|305853616|gb|EFM54055.1| translocation protein TolB [Escherichia coli NC101] gi|306905693|gb|EFN36221.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli W] gi|307552591|gb|ADN45366.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli ABU 83972] gi|307627846|gb|ADN72150.1| translocation protein TolB [Escherichia coli UM146] gi|309700962|emb|CBJ00259.1| colicin import protein [Escherichia coli ETEC H10407] gi|310336580|gb|EFQ01747.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1827-70] gi|312290267|gb|EFR18150.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 2362-75] gi|312945264|gb|ADR26091.1| translocation protein TolB [Escherichia coli O83:H1 str. NRG 857C] gi|313649617|gb|EFS14041.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 2a str. 2457T] gi|315059983|gb|ADT74310.1| periplasmic protein [Escherichia coli W] gi|315135397|dbj|BAJ42556.1| tolB [Escherichia coli DH1] gi|315614616|gb|EFU95258.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 3431] gi|320179419|gb|EFW54376.1| translocation protein TolB [Shigella boydii ATCC 9905] gi|320193145|gb|EFW67785.1| translocation protein TolB [Escherichia coli O157:H7 str. EC1212] gi|320198140|gb|EFW72744.1| translocation protein TolB [Escherichia coli EC4100B] gi|320637998|gb|EFX07767.1| translocation protein TolB [Escherichia coli O157:H7 str. G5101] gi|320643394|gb|EFX12574.1| translocation protein TolB [Escherichia coli O157:H- str. 493-89] gi|320648688|gb|EFX17324.1| translocation protein TolB [Escherichia coli O157:H- str. H 2687] gi|320654326|gb|EFX22379.1| translocation protein TolB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659958|gb|EFX27500.1| translocation protein TolB [Escherichia coli O55:H7 str. USDA 5905] gi|320664784|gb|EFX31922.1| translocation protein TolB [Escherichia coli O157:H7 str. LSU-61] gi|323153744|gb|EFZ39991.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli EPECa14] gi|323158792|gb|EFZ44805.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli E128010] gi|323163899|gb|EFZ49709.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei 53G] gi|323180020|gb|EFZ65576.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1180] gi|323185099|gb|EFZ70465.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1357] gi|323191085|gb|EFZ76350.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli RN587/1] gi|323379457|gb|ADX51725.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli KO11] gi|323942963|gb|EGB39127.1| tol-Pal system beta propeller TolB [Escherichia coli E482] gi|323953134|gb|EGB49001.1| tol-Pal system beta propeller TolB [Escherichia coli H252] gi|323958484|gb|EGB54190.1| tol-Pal system beta propeller TolB [Escherichia coli H263] gi|323967343|gb|EGB62764.1| tol-Pal system beta propeller TolB [Escherichia coli M863] gi|323976279|gb|EGB71369.1| tol-Pal system beta propeller TolB [Escherichia coli TW10509] gi|324116282|gb|EGC10203.1| tol-Pal system beta propeller TolB [Escherichia coli E1167] gi|326341511|gb|EGD65301.1| translocation protein TolB [Escherichia coli O157:H7 str. 1044] gi|326345730|gb|EGD69469.1| translocation protein TolB [Escherichia coli O157:H7 str. 1125] gi|327254429|gb|EGE66051.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli STEC_7v] gi|330910491|gb|EGH39001.1| TolB protein precursor [Escherichia coli AA86] gi|331038039|gb|EGI10259.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H736] gi|331044643|gb|EGI16770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M605] gi|331050026|gb|EGI22084.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M718] gi|331060522|gb|EGI32486.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA143] gi|331065463|gb|EGI37356.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA271] gi|331075915|gb|EGI47212.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H591] gi|331080594|gb|EGI51770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H299] gi|332093801|gb|EGI98855.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii 5216-82] gi|332342077|gb|AEE55411.1| translocation protein TolB [Escherichia coli UMNK88] gi|332760891|gb|EGJ91179.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 4343-70] gi|332761319|gb|EGJ91605.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 2747-71] gi|332763940|gb|EGJ94178.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-671] gi|332768161|gb|EGJ98346.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 2930-71] gi|333007349|gb|EGK26829.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri VA-6] gi|333008017|gb|EGK27493.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-218] gi|333010141|gb|EGK29576.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-272] gi|333021093|gb|EGK40350.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-227] gi|333021479|gb|EGK40729.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-304] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|152969308|ref|YP_001334417.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954157|gb|ABR76187.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 418 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/415 (24%), Positives = 183/415 (44%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + ++ V +V+ DL+ S FN + + Q Sbjct: 7 LHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNPLDRSRLPQ 66 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK--QIIGKKFFSS 147 + T+ + + W++LG +V G+V + +V ++L D + F + Sbjct: 67 QPTSAQEV-QPAAWSALGIDAVVVGQVTQNPDGSYQVAYQLVDTGGAPGTTLAQGSFKVT 125 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R AH SD +++ +TG KG F +RI +V + G L V D DG N ++L Sbjct: 126 KQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQYPYELRVSDYDGYN-QFLV 183 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + + ++I +F AP FS Sbjct: 184 HRSSQPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANASVRQIASFPQHNGAPAFSP 241 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++TN N S+ PDS + F SD+ G+ Q Sbjct: 242 DGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTSDQAGRPQ 301 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y + NG +RI SQ+++A Sbjct: 302 VYKVNINGGTPQRITWEGSQNQDADVSADGKTMVMVSSAGGQQHIAKQDLETGGVQVLSS 361 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 362 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 416 >gi|71892116|ref|YP_277848.1| hypothetical protein BPEN_348 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|119371035|sp|Q492W9|TOLB_BLOPB RecName: Full=Protein tolB; Flags: Precursor gi|71796222|gb|AAZ40973.1| TolB [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 453 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 111/425 (26%), Positives = 197/425 (46%), Gaps = 23/425 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSAN------YSPVSIAFTKFVSIDELGGKVS 66 + +++ L++ L +H + N+A+ ++ VS + K +SI++ ++ Sbjct: 18 VSLSIMLIIFLWKPALLADMHIEITCGVNAAHPIAVIPFTCVSNQYNKSISIED----IA 73 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +++ DL+ S FN I + K T D IP F W LG ++V G V + Sbjct: 74 SIIAADLRNSSKFNTIPVEYLPHKPTKVSDVIPTF--WEKLGINIIVLGTVHINYDESYI 131 Query: 126 VEFRLWDVKDRKQ-IIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 + + L D II + +S W R +AH IS++I++ +TG KG F +RI +V Sbjct: 132 ISYHLIDTSSNPALIISENQYSVEKKWLRYVAHAISNEIFEKLTGIKGAFCTRIAYVLR- 190 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLM 242 + + L + D DG N + S + L P +SP+ +K+AY T+ L + + Sbjct: 191 IHNDHYPYELYISDYDGHNQISICRSTEP-LMSPAWSPDGKKIAYVTFASGHSELVIQAL 249 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 +T + I +F AP FS + K+ S+ K ++++Y +DL+S +LT Sbjct: 250 NTGLVN---NIVSFPGHNGAPSFSPDCKKLAFSLSKTGSLNLYIMDLESGEITQLTKNRN 306 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PD+ I + SD+ G Q+Y + ++ +R+S S +P S G I Sbjct: 307 NNTEPSWFPDNQNIAYTSDQGGSPQIYKINVKTTEIQRLSW-LHTSNQNPNVSSDGTFII 365 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDGDTGSKLYSI 421 K I + QE +L + +P+ +P+ +++S KD T S L I Sbjct: 366 MVNRHQGKQNIAKLNLLTGQEEILTDTLLADSPSIAPNNTMVLYSNINKDLTTKSNLELI 425 Query: 422 DLNGR 426 ++G Sbjct: 426 SIDGH 430 >gi|310767030|gb|ADP11980.1| translocation protein TolB [Erwinia sp. Ejp617] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 111/444 (25%), Positives = 209/444 (47%), Gaps = 30/444 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGKVSEVVSK 71 ++ L +L++ + HA V++ T N + P+ + K+ + +V+ Sbjct: 6 RVALSVLMLFV-----AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPEDIGGIVAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL+ S FN I + Q+ P S+ Q W +LG ++ G+V V ++ Sbjct: 61 DLRNSGKFNPIDRARLPQQ---PTSVAEVQPAAWTALGIDAVIVGQVQPGADGSYTVSYQ 117 Query: 130 LWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L D ++ ++ + F W R AHT SD+ ++ +T KG F +RI +V ++ G Sbjct: 118 LVDTSGNQGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQTN-GG 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + Sbjct: 177 QFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLAN 233 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + + Sbjct: 234 GAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEP 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ PDS + + SD+ G+ Q+Y + NG +RI+ D + V S ++ + S Sbjct: 294 TWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWDGAQNQDADVSSDGKSMVMISTNS 353 Query: 368 GEKFAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G + V ++D G+ ++L D+ L + P+ +P+G +I+S + GS L + Sbjct: 354 GAQH---VARQDLVTGAVQQL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVST 406 Query: 424 NGR-NETLINTPAYASDPQWVGFM 446 +GR L T P W ++ Sbjct: 407 DGRFKARLPATDGQVKFPAWSPYL 430 >gi|322833831|ref|YP_004213858.1| Tol-Pal system beta propeller repeat protein TolB [Rahnella sp. Y9602] gi|321169032|gb|ADW74731.1| Tol-Pal system beta propeller repeat protein TolB [Rahnella sp. Y9602] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 102/400 (25%), Positives = 187/400 (46%), Gaps = 14/400 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ P+ + K+ V +V+ DL+ S FN I Q Sbjct: 19 VHAEVRIEITQGVDTARPIGVVPFKWAGPGTPPEDVGGIVAADLRNSGKFNPIDASRMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + T+ + W +LG +V G+V V ++L D ++ + + Sbjct: 79 QPTSAAEVTP-AAWTALGIDAVVIGQVQPAADGSYVVSYQLVDTSGAPGTVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI ++ ++ G L V D DG N +++ Sbjct: 138 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYIVQTN-GGKFPYELRVADYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A K+I +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANGAIKQIASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ KD ++++Y ++L S ++TN N ++ PDS + F SD+ G+ Q Sbjct: 254 DGSKLAFALSKDGSLNLYVMNLSSGQISQVTNGRSNNTEPTWFPDSQNLAFTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + NG +R++ + + V + L+ + SG + + G+ + L Sbjct: 314 VYKVNINGGAPQRLTWEGSQNQDSDVSTDGKFLVMVSSASGTQHIAKLDLATGAVQTL-- 371 Query: 388 EDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 D+ L + P+ +P+G +I+S + GS L + +GR Sbjct: 372 TDTFLDETPSLAPNGTMVIYSSSQ--GLGSVLQLVSTDGR 409 >gi|167586273|ref|ZP_02378661.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ubonensis Bu] Length = 431 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 108/439 (24%), Positives = 191/439 (43%), Gaps = 16/439 (3%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ G ++ +A V V + IA F + L +V+ +V Sbjct: 6 KLGFRALVASCLIAAG----SAANAQVNVLITGVGSTQFPIATANFANEAGLPQQVTSIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F I D+ + S+ W + GA V G V ++ + +V F Sbjct: 62 RADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNRDASGQYKVNFI 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V +S Sbjct: 119 LYDTVKQQSLGGLSLTANDGTLRTAGHKIADYIYQKLLGTRGVFATRLSYVIKSGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG N R S + I+ P +SPN KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQNPRIALSSTEPII-SPAWSPNGTKVAYVSFERKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S + + +++ IY+V+ RLT + I+ Y Sbjct: 233 -YIVSDQKGNNSAPAWSPDSQTLSVALSLTGNTQIYAVNSTGGGLRRLTQSNSIDTEPFY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G Q+Y M + G + ++ P SP G L+A+ + Sbjct: 292 SPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGRLLAYISRT 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + V + S+ ++P+++ +G+ L+++ + G D + Sbjct: 352 GGGFKLYVQDLQTGAANAITNTSHDESPSFAANGQYLLYATQSGGRNVLAAVPSDGSAPP 411 Query: 428 ETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 412 QILSVQGGSVREPSWGPFM 430 >gi|82776018|ref|YP_402365.1| translocation protein TolB [Shigella dysenteriae Sd197] gi|119371061|sp|Q32II1|TOLB_SHIDS RecName: Full=Protein tolB; Flags: Precursor gi|81240166|gb|ABB60876.1| periplasmic protein [Shigella dysenteriae Sd197] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 188/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R +HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYASHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|12084602|pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol- Dependent Translocation System And Its Interactions With The Translocation Domain Of Colicin E9 gi|114794794|pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain gi|114794795|pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain gi|114794796|pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain gi|114794797|pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain Length = 439 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 20 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 76 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|26246709|ref|NP_752749.1| translocation protein TolB [Escherichia coli CFT073] gi|91209774|ref|YP_539760.1| translocation protein TolB [Escherichia coli UTI89] gi|117622931|ref|YP_851844.1| translocation protein TolB [Escherichia coli APEC O1] gi|170683440|ref|YP_001742851.1| translocation protein TolB [Escherichia coli SMS-3-5] gi|209917991|ref|YP_002292075.1| translocation protein TolB [Escherichia coli SE11] gi|227884293|ref|ZP_04002098.1| TolB protein [Escherichia coli 83972] gi|237707297|ref|ZP_04537778.1| translocation protein TolB [Escherichia sp. 3_2_53FAA] gi|261224451|ref|ZP_05938732.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK2000] gi|261254557|ref|ZP_05947090.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK966] gi|300816390|ref|ZP_07096612.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 107-1] gi|300822971|ref|ZP_07103106.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 119-7] gi|300900747|ref|ZP_07118896.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 198-1] gi|300906999|ref|ZP_07124668.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 84-1] gi|300918401|ref|ZP_07135001.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 115-1] gi|300926144|ref|ZP_07141957.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 182-1] gi|300929454|ref|ZP_07144922.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 187-1] gi|300937787|ref|ZP_07152584.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 21-1] gi|300947179|ref|ZP_07161389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 116-1] gi|300957689|ref|ZP_07169878.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 175-1] gi|300992345|ref|ZP_07179868.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 200-1] gi|300993166|ref|ZP_07180249.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 45-1] gi|301020788|ref|ZP_07184852.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 69-1] gi|301027078|ref|ZP_07190450.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 196-1] gi|301051340|ref|ZP_07198163.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 185-1] gi|301305228|ref|ZP_07211326.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 124-1] gi|301327933|ref|ZP_07221104.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 78-1] gi|301648045|ref|ZP_07247812.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 146-1] gi|309797455|ref|ZP_07691847.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 145-7] gi|331656759|ref|ZP_08357721.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA206] gi|332282411|ref|ZP_08394824.1| translocation protein TolB [Shigella sp. D9] gi|26107108|gb|AAN79292.1|AE016757_196 TolB protein precursor [Escherichia coli CFT073] gi|148020|gb|AAA24684.1| tolB [Escherichia coli] gi|91071348|gb|ABE06229.1| periplasmic protein involved in the tonB-independent uptake of group A colicins [Escherichia coli UTI89] gi|115512055|gb|ABJ00130.1| TolB protein precursor [Escherichia coli APEC O1] gi|170521158|gb|ACB19336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli SMS-3-5] gi|209911250|dbj|BAG76324.1| TolB protein [Escherichia coli SE11] gi|226898507|gb|EEH84766.1| translocation protein TolB [Escherichia sp. 3_2_53FAA] gi|227839045|gb|EEJ49511.1| TolB protein [Escherichia coli 83972] gi|299879412|gb|EFI87623.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 196-1] gi|300297002|gb|EFJ53387.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 185-1] gi|300305362|gb|EFJ59882.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 200-1] gi|300315607|gb|EFJ65391.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 175-1] gi|300355806|gb|EFJ71676.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 198-1] gi|300398434|gb|EFJ81972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 69-1] gi|300401220|gb|EFJ84758.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 84-1] gi|300406696|gb|EFJ90234.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 45-1] gi|300414464|gb|EFJ97774.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 115-1] gi|300417843|gb|EFK01154.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 182-1] gi|300453165|gb|EFK16785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 116-1] gi|300457198|gb|EFK20691.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 21-1] gi|300462563|gb|EFK26056.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 187-1] gi|300524512|gb|EFK45581.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 119-7] gi|300531080|gb|EFK52142.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 107-1] gi|300839540|gb|EFK67300.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 124-1] gi|300845576|gb|EFK73336.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 78-1] gi|301073871|gb|EFK88677.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 146-1] gi|308118979|gb|EFO56241.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 145-7] gi|315257659|gb|EFU37627.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 85-1] gi|315287145|gb|EFU46557.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 110-3] gi|315292654|gb|EFU52006.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 153-1] gi|315299257|gb|EFU58509.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 16-3] gi|323938279|gb|EGB34537.1| tol-Pal system beta propeller protein TolB [Escherichia coli E1520] gi|323946994|gb|EGB43008.1| tol-Pal system beta propeller protein TolB [Escherichia coli H120] gi|323963121|gb|EGB58691.1| tol-Pal system beta propeller TolB [Escherichia coli H489] gi|324009566|gb|EGB78785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 57-2] gi|324010463|gb|EGB79682.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 60-1] gi|324020352|gb|EGB89571.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 117-3] gi|331055007|gb|EGI27016.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA206] gi|332104763|gb|EGJ08109.1| translocation protein TolB [Shigella sp. D9] Length = 431 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 20 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 76 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|261278785|pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In Complex With Tolb Reveals Important Differences In The Recruitment Of The Common Tolb Translocation Portal Used By Group A Colicins Length = 438 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|170769037|ref|ZP_02903490.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia albertii TW07627] gi|170122109|gb|EDS91040.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia albertii TW07627] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/426 (24%), Positives = 187/426 (43%), Gaps = 64/426 (15%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFN 80 + ++HA V + N S I F + +++GG +V+ DL+ S FN Sbjct: 14 LWTAAVHATVSIDITDWNDSARPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFN 69 Query: 81 LISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK- 137 + + Q+ P S Q W++LG +V G+V V ++L D Sbjct: 70 PLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG 126 Query: 138 QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 ++ + + W R HT SD++++ +TG KG F +RI +V ++ G L V Sbjct: 127 TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVS 185 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 186 DYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASF 242 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + Sbjct: 243 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 302 Query: 317 VFESDREGKEQLYVMQSNGSDQKRI----SQDKEA------------------------- 347 F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 303 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 362 Query: 348 -----------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQ 393 ++ D P +P G ++ ++ G + ++ DG + RL D ++ Sbjct: 363 LVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 394 APTWSP 399 P WSP Sbjct: 423 FPAWSP 428 >gi|187733089|ref|YP_001879397.1| translocation protein TolB [Shigella boydii CDC 3083-94] gi|226705895|sp|B2TUC6|TOLB_SHIB3 RecName: Full=Protein tolB; Flags: Precursor gi|187430081|gb|ACD09355.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii CDC 3083-94] Length = 430 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 187/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPSAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|145219969|ref|YP_001130678.1| WD40 domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145206133|gb|ABP37176.1| WD-40 repeat-containing protein [Chlorobium phaeovibrioides DSM 265] Length = 442 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 105/351 (29%), Positives = 170/351 (48%), Gaps = 26/351 (7%) Query: 100 FQDWNSLGAQVLVTGRVI-KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI 158 F NS+GA+ G V+ K G L +E ++D + I+ K + + R IAH Sbjct: 105 FGALNSVGAEFYAGGAVVQKSGNVVLSME--VYDTLGGRPILRKTYTGKESDLRSIAHAF 162 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 D+ + +TG F S+++FVS SG + +C D DG +R +T +R + P Sbjct: 163 CADLVELLTGRPSVFGSKVVFVSNR--SGFKEIYMC--DYDGHGMRQMTNTRS-LALTPV 217 Query: 219 FSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL-ISV 276 SP+ Q +AY Y L + + R+ R GN + P + SN + A +S Sbjct: 218 LSPDGQHLAYTDYASGRPRLSILDLAGGKRRSVARSGNS----IDPGWRSNAEVATTLSF 273 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 Q D+ +IY V + R+TN+ I++S S+SPD +++ F S R Q++++ Sbjct: 274 QGDQ--EIYLVRPDGSLARRVTNSRGIDLSPSFSPDGNKMAFVSSRTSAPQIFILDLQTG 331 Query: 337 DQKRISQDKEASY-FDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNL- 392 KR++ + SY P WSPQGD IA++ +GE I + DGS R L S Sbjct: 332 QTKRLTYN--GSYNTQPSWSPQGDKIAYSTMEKNGE-INIFTINTDGSSLRQLTSGSRQN 388 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 ++P+WSP G ++F+ + G KL+ ++ G + L+ P W Sbjct: 389 ESPSWSPGGDMIVFTSSRQGQ--KKLFVMNAAGGGQRRLLQLEGEQMQPSW 437 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG+ R +T SR I P FSP+ K+A+ + +++++D + + KR+ S Sbjct: 285 DGSLARRVTNSRG-IDLSPSFSPDGNKMAFVS-SRTSAPQIFILDLQTGQT-KRLTYNGS 341 Query: 259 MILAPRFSSNG-KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P +S G K A +++K+ ++I++++ ++ +LT+ N S S+SP IV Sbjct: 342 YNTQPSWSPQGDKIAYSTMEKNGEINIFTINTDGSSLRQLTSGSRQNESPSWSPGGDMIV 401 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 F S R+G+++L+VM + G Q+R+ Q E P WS Sbjct: 402 FTSSRQGQKKLFVMNAAGGGQRRLLQ-LEGEQMQPSWS 438 >gi|157962385|ref|YP_001502419.1| translocation protein TolB [Shewanella pealeana ATCC 700345] gi|189035989|sp|A8H5P7|TOLB_SHEPA RecName: Full=Protein tolB; Flags: Precursor gi|157847385|gb|ABV87884.1| Tol-Pal system beta propeller repeat TolB [Shewanella pealeana ATCC 700345] Length = 440 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/413 (27%), Positives = 195/413 (47%), Gaps = 25/413 (6%) Query: 50 IAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLG 107 IA FV + ++S+VV DL RS F+ + S Q+ + + W + Sbjct: 37 IAVIPFVWQGTGPMPSQISDVVMSDLARSGTFSPADELSLPQRGISTLAQFNASAWMAQP 96 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQ----------IIGKKFFSSPASWRKIAH 156 A+ +V G + G D+ V F L D VK + Q I ++ S A +R+ H Sbjct: 97 AEAVVMGSIKPYGGDKYLVSFELIDLVKAQLQSDSMSTKDLVIDSRETVISAAQFRQYGH 156 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQIL 214 ISD +Y+ +TG +G F +R+ +V VV+ K+ L + D DG N + L S + L Sbjct: 157 RISDVVYEKLTGIRGAFLTRVAYV---VVNHGEKSPYKLMIADYDGYNEQMLLRSPEP-L 212 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ Q +AY ++++ V++ + + K I +F + AP FS +GK+ + Sbjct: 213 MSPSWSPDGQSLAYVSFENRKA-EVFVQNIYTQQRTK-ITSFDGINGAPVFSPDGKKLAV 270 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ KD ++Y VD+ + A +R+TN I+ S+ PD ++ S+R G+ QLY + + Sbjct: 271 TLSKDGQPEVYVVDIATKAIKRVTNHYAIDTEPSWFPDGKSLLITSERGGRPQLYRVFLD 330 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 R++ + E + + SP G I F KF I M + ++L ++ Sbjct: 331 SGKISRLTFEGEWNLGGSI-SPDGRSIIFVNRINGKFNIARMDLETRFMQVLTSTRLDES 389 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 P+ +P+G +I+ G L ++ ++GR L P W F+ Sbjct: 390 PSVAPNGTMVIYGTTYQGK--QVLAAVSMDGRFKARLPAGQGEVKSPSWSPFL 440 >gi|167623622|ref|YP_001673916.1| translocation protein TolB [Shewanella halifaxensis HAW-EB4] gi|189035988|sp|B0TPX8|TOLB_SHEHH RecName: Full=Protein tolB; Flags: Precursor gi|167353644|gb|ABZ76257.1| Tol-Pal system beta propeller repeat TolB [Shewanella halifaxensis HAW-EB4] Length = 440 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 109/413 (26%), Positives = 196/413 (47%), Gaps = 25/413 (6%) Query: 50 IAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLG 107 IA FV + ++S+VV DL RS F+ + S Q+ + + W + Sbjct: 37 IAVIPFVWQGTGPMPSQISDVVMSDLARSGTFSPADELSLPQRGISTLAQFNASAWMTQP 96 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQ----------IIGKKFFSSPASWRKIAH 156 A+ +V G + G D+ V F L D VK + Q I ++ + A +R+ H Sbjct: 97 AEAVVMGSIKPYGGDKYLVSFELIDLVKAQLQPDSQSAQDLVIDSRETIITAAQFRQYGH 156 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQIL 214 ISD +Y+ +TG +G F +RI +V VV+ K+ L + D DG N + L S + L Sbjct: 157 RISDVVYEKLTGIRGAFLTRIAYV---VVNHGEKSPYKLMISDYDGYNEQMLLRSPEP-L 212 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ Q++AY ++++ +Y+ + + + +F + AP FS +GK+ + Sbjct: 213 MSPSWSPDGQRLAYVSFENRKA-EIYVQNIYTQQR-TNVTSFDGINGAPVFSPDGKKLAV 270 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ KD ++Y VD+ + A +R+TN I+ S+ PD ++ S+R G+ QLY + + Sbjct: 271 TLSKDGQPEVYVVDIATKAIKRVTNHYAIDTEPSWFPDGKSLLITSERGGRPQLYRVFLD 330 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 R++ + E + + +P G I F + KF I M + ++L ++ Sbjct: 331 SGKISRLTFEGEWNLGGSI-APDGRSIIFVNRTNGKFNIARMDLETRFMQVLTSTRLDES 389 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 P+ +P+G +I+ G L ++ ++GR L P W F+ Sbjct: 390 PSVAPNGTMVIYGTTYQGK--QVLAAVSMDGRFKARLPVGQGEVKSPSWSPFL 440 >gi|294637421|ref|ZP_06715712.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella tarda ATCC 23685] gi|291089414|gb|EFE21975.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella tarda ATCC 23685] Length = 430 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 106/415 (25%), Positives = 194/415 (46%), Gaps = 18/415 (4%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 + LLVL + + +SA P+ + K++ + +++ DL+ S Sbjct: 8 MVGLLVLWASVLHAEVRIVITQGVDSAR--PIGVVPFKWMGPGAAPENIGGIIAADLRNS 65 Query: 77 DVFNLISQDSFKQK-ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK- 134 FN I Q+ T + P W +LG +V G+V V ++L D Sbjct: 66 GKFNPIDASRMPQQPATAAEVTP--AAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTSG 123 Query: 135 DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + ++ + + W R AHT SD++++ +TG KG F +RI +V ++ G L Sbjct: 124 NPGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYEL 182 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DG N +++ + L P +S + K+AY T+ E ++ T + A +++ Sbjct: 183 RVADYDGYN-QFVVHRSAEPLMSPAWSSDGSKLAYVTF--ESGRSALVIQTLSNGAIRQV 239 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +F +P FS +G + ++ K ++++Y +DL S A ++T+ N S+ PDS Sbjct: 240 ASFPRHNGSPAFSPDGTKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPSWFPDS 299 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + F SD+ G+ Q+Y + NG +R++ + A D SP G + S A Sbjct: 300 QNLAFTSDQAGRPQIYKININGGAAQRLTWEG-AQNQDAEVSPDGKFLVMV--SSNAGAQ 356 Query: 374 GVMKKD-GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + K D G+ ++ D+ L + P+ +P+G +I+S + GS L + ++GR Sbjct: 357 HIAKLDLGTNATQVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGSVLQLVSIDGR 409 >gi|258621415|ref|ZP_05716449.1| translocation protein TolB precursor [Vibrio mimicus VM573] gi|258626844|ref|ZP_05721651.1| translocation protein TolB precursor [Vibrio mimicus VM603] gi|258580891|gb|EEW05833.1| translocation protein TolB precursor [Vibrio mimicus VM603] gi|258586803|gb|EEW11518.1| translocation protein TolB precursor [Vibrio mimicus VM573] Length = 441 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 115/451 (25%), Positives = 206/451 (45%), Gaps = 36/451 (7%) Query: 22 VLIG-GFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 +LIG GF + A V T+ + + P++I K+ +L VS V++ DLQRS F Sbjct: 1 MLIGTGFTNVANAALELVITDGIDSARPIAIIPFKWEGGTKLPEDVSAVIASDLQRSGKF 60 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD------- 132 + + Q + + + F W SLG L+TG + + + + ++L D Sbjct: 61 SPVPTSKMPQTPYSEEQV-NFGKWTSLGVDSLLTGTITQNAEGSYVISYQLVDIVRGQLT 119 Query: 133 -------------VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRIL 178 V + ++ K + P S R+ AH I+D +Y+ +TGE+G F +RI Sbjct: 120 QGQSKALSPDGQLVLSKDHVLFNKVATVPPSRMREYAHRIADLVYEELTGERGAFLTRIA 179 Query: 179 FVSESVVSG--IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ + Sbjct: 180 YV---VVNDKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSFQNGQA 235 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 +++M+ + K + +F APRFS +GK + + K + +Y++DL + + Sbjct: 236 -EIFMMNIYTGQRDK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLKE 293 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T+ N + PD ++F SDR GK Q+Y + + KR++ + + +P Sbjct: 294 VTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSDGATKRLTWQGSQNLGGQI-TP 352 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G + S F + + + ++L + ++P+ +P+G +I+S + Sbjct: 353 DGKFLVMVNRSDSGFNLAKLDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVL 412 Query: 417 KLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + SID GR L T P W F+ Sbjct: 413 SMVSID--GRFKARLPATNGRVRAPAWSPFL 441 >gi|115350731|ref|YP_772570.1| translocation protein TolB [Burkholderia ambifaria AMMD] gi|123027500|sp|Q0BHY7|TOLB_BURCM RecName: Full=Protein tolB; Flags: Precursor gi|115280719|gb|ABI86236.1| TolB, N-terminal domain protein [Burkholderia ambifaria AMMD] Length = 431 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 175/399 (43%), Gaps = 12/399 (3%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F + L +V+ +V DL RS F I D+ + S+ W + GA Sbjct: 42 IATANFANEAGLPQQVTSIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGAN 98 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 V G V +E + +V F L+D ++ + G ++ + R H I+D IYQ + G Sbjct: 99 AFVAGSVNREANGQYKVNFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGV 158 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +R+ +V ++ + L + D DG N R S + I+ P +SP+ KVAY Sbjct: 159 RGVFATRLSYVIKTGN----RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYV 213 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +++ + + VY+ D R + + + AP +S + +++ IY+V+ Sbjct: 214 SFERKKPI-VYIHDLPTGRR-YMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA 271 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 RLT + I+ YSPD I F SDR G Q+Y M + G + Sbjct: 272 NGGGLRRLTQSSSIDTEPYYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGS 331 Query: 350 FD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 ++ P SP G L+A+ +G F + V + + ++P+++ +G+ L+++ Sbjct: 332 YNTSPRISPDGKLLAYISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYA 391 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + G D + + L +P W FM Sbjct: 392 TQSGGRNVLAAVPSDGSAPPQILSVQGGSVREPSWGPFM 430 >gi|259909070|ref|YP_002649426.1| translocation protein TolB [Erwinia pyrifoliae Ep1/96] gi|224964692|emb|CAX56209.1| Protein TolB (Translocation of group A colicins) [Erwinia pyrifoliae Ep1/96] Length = 430 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 111/444 (25%), Positives = 208/444 (46%), Gaps = 30/444 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGKVSEVVSK 71 ++ L +L++ + HA V++ T N + P+ + K+ + +V+ Sbjct: 6 RVALSVLMLFV-----AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPEDIGGIVAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL+ S FN I + Q+ P S+ Q W +LG ++ G+V V ++ Sbjct: 61 DLRNSGKFNPIDRARLPQQ---PTSVAEVQPAAWTALGIDAVIVGQVQPGADGSYTVSYQ 117 Query: 130 LWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L D + ++ + F W R AHT SD+ ++ +T KG F +RI +V ++ G Sbjct: 118 LVDTSGNPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQTN-GG 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + Sbjct: 177 QFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLAN 233 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + + Sbjct: 234 GAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEP 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ PDS + + SD+ G+ Q+Y + NG +RI+ D + V S ++ + S Sbjct: 294 TWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWDGAQNQDADVSSDGKSMVMISTNS 353 Query: 368 GEKFAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G + V ++D G+ ++L D+ L + P+ +P+G +I+S + GS L + Sbjct: 354 GAQH---VARQDLVTGAVQQL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVST 406 Query: 424 NGR-NETLINTPAYASDPQWVGFM 446 +GR L T P W ++ Sbjct: 407 DGRFKARLPATDGQVKFPAWSPYL 430 >gi|238785869|ref|ZP_04629837.1| hypothetical protein yberc0001_38250 [Yersinia bercovieri ATCC 43970] gi|238713239|gb|EEQ05283.1| hypothetical protein yberc0001_38250 [Yersinia bercovieri ATCC 43970] Length = 430 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/403 (24%), Positives = 185/403 (45%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D ++ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANGAIRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 254 DGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G + +G I Sbjct: 314 VYKVNINGGAPQRITWEGSQNQNADV-----SPDGKFLVLVSSNGGAQHIAKQDLVTGAV 368 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + G+ L + +GR Sbjct: 369 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAVLQLVSTDGR 409 >gi|167855025|ref|ZP_02477799.1| Dna-J like membrane chaperone protein [Haemophilus parasuis 29755] gi|167853873|gb|EDS25113.1| Dna-J like membrane chaperone protein [Haemophilus parasuis 29755] Length = 428 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 107/425 (25%), Positives = 193/425 (45%), Gaps = 50/425 (11%) Query: 17 LCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L ++G FF + A V+++ + IA F ++ + V+++++ DL+ Sbjct: 7 LTSILGIVGLFFSVGVKAESDVRISIDQGVSMAQPIAVIPFKAMGGVPDDVAQIIADDLR 66 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 S F + + S + ++ + + W ++G +V G+V G + ++L D Sbjct: 67 NSGKFTPLDRASLPAQPSSAAEV-NPEQWTNIGIDNVVVGQVSAVGGG-YNIAYQLVDTL 124 Query: 134 ---KDRKQIIGKKFFSSPASWRKI-AHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +I + F+ PA+ ++ AHT+SD +++ +T +G F ++I +V V G+ Sbjct: 125 GTSGAAGNVIAQGSFNVPAAQMRLGAHTVSDQVFEKLTQIRGAFRTKIAYV---VQRGVS 181 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N + S++ L P +SP+ K+AY T++++ +V + D R A Sbjct: 182 SYELRVSDYDGFNAFTIVKSKEP-LMSPEWSPDGSKLAYVTFENKK-SQVVVHDIR-SGA 238 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K IG+ R AP FS +G R + +D ++IY + + +LT+ N S+ Sbjct: 239 RKVIGSLRGHNGAPSFSPDGSRVAFASNQDGVLNIYVTGVGGGSPRQLTSNAGNNTEPSW 298 Query: 310 SPDSSQIVFESDREGKEQLYVMQS--------NGSDQKRISQDKE--------------- 346 SPD I+F SDR G Q+Y M S GS +IS D + Sbjct: 299 SPDGGYILFTSDRGGLPQVYQMSSSGGGASLIGGSGSGKISADGKNLIMVSGDRIVRRDL 358 Query: 347 ---------ASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQA 394 +++ D P SP G ++ ++ G + ++ DG + L + Sbjct: 359 VSGSTEAISSTFLDESPSISPNGTMVIYSSTKGVSKVLQLVSADGRFKANLPGAGGQYKF 418 Query: 395 PTWSP 399 P WSP Sbjct: 419 PAWSP 423 >gi|206561547|ref|YP_002232312.1| translocation protein TolB [Burkholderia cenocepacia J2315] gi|226705869|sp|B4EDC0|TOLB_BURCJ RecName: Full=Protein tolB; Flags: Precursor gi|198037589|emb|CAR53527.1| putative periplasmic TolB protein [Burkholderia cenocepacia J2315] Length = 431 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 106/442 (23%), Positives = 190/442 (42%), Gaps = 16/442 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAG----SAANAQVNVLITGVGSTQFPIATANFTNEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I D+ + S+ W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNREANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRR-YMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G F + V + + ++P+++ +G+ L+++ + G D + Sbjct: 349 SRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDGS 408 Query: 425 GRNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 APPQILSVQGGSVREPSWGPFM 430 >gi|123443146|ref|YP_001007120.1| translocation protein TolB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160929|ref|YP_004297506.1| translocation protein TolB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166229994|sp|A1JRK8|TOLB_YERE8 RecName: Full=Protein tolB; Flags: Precursor gi|122090107|emb|CAL12970.1| TolB colicin import protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604836|emb|CBY26334.1| tolb protein precursor, periplasmic protein involved in the TonB-independent uptake of group A colicins [Yersinia enterocolitica subsp. palearctica Y11] gi|325665159|gb|ADZ41803.1| translocation protein TolB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864065|emb|CBX74142.1| protein tolB [Yersinia enterocolitica W22703] Length = 430 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/403 (24%), Positives = 185/403 (45%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D ++ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALVIQTLANGAIRQVASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 254 DGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A SP G + +G I Sbjct: 314 VYKVNINGGAPQRITWEGSQNQNADV-----SPDGKFLVLVSSNGGAQHIAKQDLVTGAV 368 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + G+ L + +GR Sbjct: 369 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAVLQLVSTDGR 409 >gi|283479096|emb|CAY75012.1| Protein tolB precursor [Erwinia pyrifoliae DSM 12163] Length = 439 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 111/444 (25%), Positives = 208/444 (46%), Gaps = 30/444 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGKVSEVVSK 71 ++ L +L++ + HA V++ T N + P+ + K+ + +V+ Sbjct: 15 RVALSVLMLFV-----AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPEDIGGIVAA 69 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL+ S FN I + Q+ P S+ Q W +LG ++ G+V V ++ Sbjct: 70 DLRNSGKFNPIDRARLPQQ---PTSVAEVQPAAWTALGIDAVIVGQVQPGADGSYTVSYQ 126 Query: 130 LWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L D + ++ + F W R AHT SD+ ++ +T KG F +RI +V ++ G Sbjct: 127 LVDTSGNPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQTN-GG 185 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + Sbjct: 186 QFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLAN 242 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + + Sbjct: 243 GAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEP 302 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ PDS + + SD+ G+ Q+Y + NG +RI+ D + V S ++ + S Sbjct: 303 TWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWDGAQNQDADVSSDGKSMVMISTNS 362 Query: 368 GEKFAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G + V ++D G+ ++L D+ L + P+ +P+G +I+S + GS L + Sbjct: 363 GAQH---VARQDLVTGAVQQL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVST 415 Query: 424 NGR-NETLINTPAYASDPQWVGFM 446 +GR L T P W ++ Sbjct: 416 DGRFKARLPATDGQVKFPAWSPYL 439 >gi|110804634|ref|YP_688154.1| translocation protein TolB [Shigella flexneri 5 str. 8401] gi|123147175|sp|Q0T6X7|TOLB_SHIF8 RecName: Full=Protein tolB; Flags: Precursor gi|110614182|gb|ABF02849.1| translocation protein TolB precursor [Shigella flexneri 5 str. 8401] Length = 430 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 104/421 (24%), Positives = 186/421 (44%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 G+ Q+Y + NG +RI SQ+++A Sbjct: 308 LAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|260779148|ref|ZP_05888040.1| TolB protein precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260605312|gb|EEX31607.1| TolB protein precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 450 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 119/461 (25%), Positives = 209/461 (45%), Gaps = 51/461 (11%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 CLL V+ F + A V T+ + + P++I K+ +L VS V++ DLQRS Sbjct: 9 CLLTVMSA--FQVANAALELVITDGIDSARPIAIVPFKWEGSTKLPHNVSAVIASDLQRS 66 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV--- 133 F+ ++ Q + I F W LG L+TG + + + + ++L DV Sbjct: 67 GKFSPVATSKMPQTPYSESEI-NFDAWTGLGVDALLTGTISQNAEGNYVINYQLVDVVRG 125 Query: 134 -----------KDRKQIIGKK--FFSSPAS-----WRKIAHTISDDIYQSITGEKGDFNS 175 D + ++ K F+ A+ R+ AH ISD +Y+ +TGE+G F + Sbjct: 126 QLTQGQSKALSTDGQLVLSKDHVLFNKRATVPGERMREYAHRISDLVYKELTGERGAFLT 185 Query: 176 RILFVSESVVSGIIKNS----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 RI +V VV+ K+S L V D DG N R + S+ Q L P +SP+ +K+AY ++ Sbjct: 186 RIAYV---VVND--KDSYPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSF 239 Query: 232 DDED----ILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + I+ +Y + ++ P+ G APRFS +G + + + K ++ +Y+ Sbjct: 240 QNGQAEIFIMNIYTGEREKVTSYPRHNG-------APRFSPDGNKLALVLSKTGSLQVYT 292 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +DL++ ++T N + PD ++F SDR GK Q+Y + R++ Sbjct: 293 LDLKTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLASGSTNRLTWQGR 352 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + +P G + S F + + ++L + ++P+ +P+G +I+ Sbjct: 353 QNLGGQI-TPDGRFLVMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIY 411 Query: 407 SRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 S + + SID GR L T P W F+ Sbjct: 412 SSIFNKTNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 450 >gi|189346278|ref|YP_001942807.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobium limicola DSM 245] gi|189340425|gb|ACD89828.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobium limicola DSM 245] Length = 444 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 107/381 (28%), Positives = 182/381 (47%), Gaps = 21/381 (5%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIP-RFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV + L SD+F+++ S + + + F +S+GA+V G V ++ ++ + Sbjct: 75 VVKEGLIFSDLFSVLPPPSNVRTGSEGKGLAVNFGALSSVGAEVYAGGTVSRK-SGKVNL 133 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D K ++ K + S R + H D+ + +TG+K F S+I+FVS S Sbjct: 134 DMEVYDTFGTKLLMKKTYTGSEDQLRAMGHAFCADLIELLTGKKSYFGSKIVFVSNKTGS 193 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLMDTR 245 I C D DG I+ LT R I P FSP+ ++AY +Y + L + M Sbjct: 194 KEIYQ--C--DFDGQGIQQLTNFRS-ISLTPVFSPDGTRLAYTSYTSGKPTLYIRSMS-- 246 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 D + +G + + P + NG ++ + +IY + + RLTN+ I++ Sbjct: 247 -DNSIAAVGK-NGVSVDPGWR-NGSEVATTLSFEGDQEIYLIRSDGGISRRLTNSRGIDV 303 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD Q+ F S R G Q++V +R++ + P WSP GD IA++ Sbjct: 304 SPTFSPDGKQMAFVSSRNGMPQIFVQDVQSGQTRRLTYSGRYNT-QPSWSPSGDKIAYST 362 Query: 366 F--SGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + SGE I V+ DGS +RL ++P+WSP G ++F+ + G G KLY + Sbjct: 363 WEKSGE-INIFVINADGSGVKRLTSGVRENESPSWSPDGSMIVFTSNRQG--GKKLYVMS 419 Query: 423 LNGRNE-TLINTPAYASDPQW 442 G ++ L+ P W Sbjct: 420 STGGSQRRLLQMDGEQMQPSW 440 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG R LT SR I P FSP+ +++A+ + + + ++++ D + + +R+ Sbjct: 288 DGGISRRLTNSRG-IDVSPTFSPDGKQMAFVSSRN-GMPQIFVQDVQSGQT-RRLTYSGR 344 Query: 259 MILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P +S +G + S +K ++I+ ++ + +RLT+ + N S S+SPD S IV Sbjct: 345 YNTQPSWSPSGDKIAYSTWEKSGEINIFVINADGSGVKRLTSGVRENESPSWSPDGSMIV 404 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 F S+R+G ++LYVM S G Q+R+ Q + P WS Sbjct: 405 FTSNRQGGKKLYVMSSTGGSQRRLLQ-MDGEQMQPSWS 441 >gi|307249519|ref|ZP_07531506.1| hypothetical protein appser4_3300 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858374|gb|EFM90443.1| hypothetical protein appser4_3300 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 426 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 111/404 (27%), Positives = 187/404 (46%), Gaps = 28/404 (6%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F + + V ++++ DL+ S F + + + + + Q W +G Sbjct: 42 IAVVPFKTNGGVPADVGQIIADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVD 100 Query: 110 VLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSIT 167 +V G+V G V ++L D + + ++ + F+ PA+ R+ AHT+SD +++ IT Sbjct: 101 SVVVGQVTPTGGG-YNVAYQLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKIT 159 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F ++I +V V G+ L V D DG N + S++ L P +SP+ ++A Sbjct: 160 QIRGAFRTKIAYV---VQRGVSSYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLA 215 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y T++++ +V + D R + + + R AP FS +G R + +D +DIY V Sbjct: 216 YVTFENKK-AQVVVHDLR-SGSRRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVV 273 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 +LT N S+SPD S I F SDR G Q+Y M S+G + Sbjct: 274 GANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMGSSGGGASPMG--GSG 331 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI 405 SY V S +LI +G+K V+K+D + V S ++P+ SP+G +I Sbjct: 332 SYNAKVSSDGKNLI---MIAGDK----VVKRDLASGGTEVLSSTFLDESPSISPNGIMVI 384 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 +S K T L + +GR + N P P W ++ Sbjct: 385 YSSTK--GTSKVLQLVSADGRFKA--NLPGAGGQFKFPAWSPYL 424 >gi|293397222|ref|ZP_06641495.1| tol-Pal system beta propeller repeat protein TolB [Serratia odorifera DSM 4582] gi|291420242|gb|EFE93498.1| tol-Pal system beta propeller repeat protein TolB [Serratia odorifera DSM 4582] Length = 430 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 103/401 (25%), Positives = 190/401 (47%), Gaps = 16/401 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ V ++V+ DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPEDVGKIVAADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + T + W +LG +V G+V V ++L D ++ + + Sbjct: 79 QPTTASEVTP-AAWTALGIDAVVVGQVQPGADGGYLVSYQLVDTSGSPGTVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 138 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPYELRVADYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q L P +SP+ K+AY T+ E ++ T + A ++I +F AP FS Sbjct: 196 HRSPQPLMSPTWSPDGSKLAYVTF--ESGRSALVVQTLSNGAIRQIASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R ++ K ++++Y ++L S +LT+ N ++ PD + F SD+ G+ Q Sbjct: 254 DGSRLAFALSKSGSLNLYVMNLGSGQITQLTDGRSNNTEPTWFPDGQSLAFTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLL 386 +Y + ++G +R++ + + V + L+ T +G + + K+D GS + Sbjct: 314 IYKISASGGAAQRLTWEGGQNQDSEVSADGKFLVMVTTNNGVQH---IAKQDLGSGAVQV 370 Query: 387 VEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + D+ L + P+ +P+G +I+S + GS L + +GR Sbjct: 371 LTDTFLDETPSIAPNGTMVIYSSTQ--GMGSVLQLVSTDGR 409 >gi|46143830|ref|ZP_00133958.2| COG0823: Periplasmic component of the Tol biopolymer transport system [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207787|ref|YP_001053012.1| translocation protein TolB precursor [Actinobacillus pleuropneumoniae L20] gi|303249537|ref|ZP_07335744.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252545|ref|ZP_07338708.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245116|ref|ZP_07527209.1| hypothetical protein appser1_3260 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247295|ref|ZP_07529343.1| hypothetical protein appser2_2920 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251836|ref|ZP_07533737.1| hypothetical protein appser6_3560 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254072|ref|ZP_07535919.1| hypothetical protein appser9_3270 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256331|ref|ZP_07538114.1| hypothetical protein appser10_3380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258527|ref|ZP_07540264.1| hypothetical protein appser11_3280 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260770|ref|ZP_07542457.1| hypothetical protein appser12_3420 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166229973|sp|A3MZ21|TOLB_ACTP2 RecName: Full=Protein tolB; Flags: Precursor gi|126096579|gb|ABN73407.1| translocation protein TolB precursor [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648513|gb|EFL78706.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651611|gb|EFL81760.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854005|gb|EFM86217.1| hypothetical protein appser1_3260 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856139|gb|EFM88294.1| hypothetical protein appser2_2920 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860528|gb|EFM92540.1| hypothetical protein appser6_3560 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862997|gb|EFM94944.1| hypothetical protein appser9_3270 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865157|gb|EFM97057.1| hypothetical protein appser10_3380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867431|gb|EFM99282.1| hypothetical protein appser11_3280 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869496|gb|EFN01286.1| hypothetical protein appser12_3420 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 426 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 111/404 (27%), Positives = 187/404 (46%), Gaps = 28/404 (6%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F + + V ++++ DL+ S F + + + + + Q W +G Sbjct: 42 IAVVPFKANGGVPADVGQIIADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVD 100 Query: 110 VLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSIT 167 +V G+V G V ++L D + + ++ + F+ PA+ R+ AHT+SD +++ IT Sbjct: 101 SVVVGQVTPTGGG-YNVAYQLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKIT 159 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F ++I +V V G+ L V D DG N + S++ L P +SP+ ++A Sbjct: 160 QIRGAFRTKIAYV---VQRGVSSYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLA 215 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y T++++ +V + D R + + + R AP FS +G R + +D +DIY V Sbjct: 216 YVTFENKK-AQVVVHDLR-SGSRRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVV 273 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 +LT N S+SPD S I F SDR G Q+Y M S+G + Sbjct: 274 GANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMGSSGGGASPMG--GSG 331 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI 405 SY V S +LI +G+K V+K+D + V S ++P+ SP+G +I Sbjct: 332 SYNAKVSSDGKNLI---MIAGDK----VVKRDLASGGTEVLSSTFLDESPSISPNGIMVI 384 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 +S K T L + +GR + N P P W ++ Sbjct: 385 YSSTK--GTSKVLQLVSADGRFKA--NLPGAGGQFKFPAWSPYL 424 >gi|78065363|ref|YP_368132.1| translocation protein TolB [Burkholderia sp. 383] gi|119371038|sp|Q39J78|TOLB_BURS3 RecName: Full=Protein tolB; Flags: Precursor gi|77966108|gb|ABB07488.1| Periplasmic component of the Tol biopolymer transport system [Burkholderia sp. 383] Length = 431 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 189/439 (43%), Gaps = 16/439 (3%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 +L + + L+ G ++ +A V V + IA F + L +V+ +V Sbjct: 6 KLGFRALVASCLITAG----SAANAQVNVLITGVGSTQFPIATANFANEANLPQQVTSIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F I D+ + S+ W + GA V G V +E + +V F Sbjct: 62 RADLARSGKFTNI--DAGSTPVPESASV-DLGAWKAKGANAFVAGSVNREANGQYKVNFI 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 119 LYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQNARIALSSTEPII-SPSWSPSGTKVAYVSFERKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S + +++ IY+V+ RLT + I+ Y Sbjct: 233 -YIVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNSTGGGLRRLTQSSSIDTEPFY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 SPD I F SDR G Q+Y M + G + ++ P SP G L+A+ + Sbjct: 292 SPDGHWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRT 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G F + V + + ++P+++ +G+ L+++ + G D + Sbjct: 352 GGGFKLYVQDLQSGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDGSAPP 411 Query: 428 ETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 412 QILSVQGGSVREPSWGPFM 430 >gi|312796780|ref|YP_004029702.1| TolB protein [Burkholderia rhizoxinica HKI 454] gi|312168555|emb|CBW75558.1| TolB protein [Burkholderia rhizoxinica HKI 454] Length = 430 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 105/442 (23%), Positives = 201/442 (45%), Gaps = 21/442 (4%) Query: 9 EELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 ++L +K + LLV G S A + V + IA F + +++ + Sbjct: 5 KKLGLKTLVASLLVTAG----VSARADLTVLVTGVGSTQFPIAVASFTNEASSPQQIAAI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V +L RS F+ I D+ ++ DS+ W + GA V G V + + V F Sbjct: 61 VRANLARSGKFSNI--DAGSAPVSESDSV-DLGGWKAKGANAFVGGSVTRLANGQYEVRF 117 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RL+D ++ + G S + R AH +D IYQ + G +G F +R+ +V+ Sbjct: 118 RLYDTIKQQSLGGLSLVSPESGLRMSAHKAADYIYQKLLGSRGMFATRLSYVTRHGG--- 174 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + L + D DG N ++ + + + P +SP+ K+AY +++ + + VY+ D R Sbjct: 175 -RYQLKISDSDGQN-EHIALTSPEPIISPTWSPDGTKLAYVSFERKKPI-VYIHDLPTGR 231 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + + AP +S +G + +++ I+ V+ + RLT I+ + Sbjct: 232 R-VMVSDQKGNNSAPAWSPDGTKLAVALSLTGNTQIFIVNADGSGLRRLTRGHSIDTEPA 290 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +SPD I F SDR G+ Q+Y M + G S +R++ + + V SP G +A+ Sbjct: 291 FSPDGQSIYFTSDRGGQPQIYKMPAQGESASAAQRVTFNGSYNTSARV-SPDGKELAYIS 349 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G F + + L + + ++P+++ +G+ L+++ + +G L ++ +G Sbjct: 350 RVGGAFRLYLQDLSTGSATALTDTTRDESPSFAANGQYLLYATQVNGR--QVLAAVSTDG 407 Query: 426 RNETLINTPAYA-SDPQWVGFM 446 +++ P +P W FM Sbjct: 408 SIRQVLSIPGGGVREPSWGPFM 429 >gi|315634713|ref|ZP_07889997.1| tol-Pal system beta propeller repeat protein TolB [Aggregatibacter segnis ATCC 33393] gi|315476661|gb|EFU67409.1| tol-Pal system beta propeller repeat protein TolB [Aggregatibacter segnis ATCC 33393] Length = 426 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 178/391 (45%), Gaps = 44/391 (11%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ ++++++ DL+ S FN +S Q+ T + W++L Sbjct: 38 PIAVVPFKWNGPGSAPADIADIIASDLRNSGKFNPLSVSKMPQQPTTAAEV-NPSAWSAL 96 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 G + ++ G+V + ++L D + I+ + ++ W R AHT+SD+ ++ Sbjct: 97 GIEAVIVGQVTPS-NGGFDIAYQLVDTMGSAGSILSQNQYTVTQKWVRYGAHTVSDETFE 155 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG +G F +RI +V + G + V D DG N +++ Q P +SP+ + Sbjct: 156 KLTGIRGAFRTRIAYVVQKN-GGSQPYEVRVADYDGFN-QFIINKSSQPFMSPAWSPDGK 213 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+AY +++++ ++ L D A K I +F AP FS +G R + KD ++I Sbjct: 214 KLAYVSFENKK-AQIILQDLS-SMARKVIASFPGHNGAPAFSPDGSRLAFASSKDGVLNI 271 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK----- 339 Y ++L S +LT+ N S+SPD IVF SDR G Q+Y M ++G Sbjct: 272 YVINLGSGQVSQLTSGSGNNTEPSWSPDGQSIVFTSDRGGSPQVYRMSASGGGASLVGGR 331 Query: 340 ---RISQDK-------------------------EASYFD--PVWSPQGDLIAFTKFSGE 369 +IS D +++ D P SP G +I ++ G Sbjct: 332 GSGQISSDGSTLVMIDGSNNIVKQDLVSGGSEVLSSTFLDESPSISPNGIMIIYSSTQGL 391 Query: 370 KFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + ++ DG + RL D ++ P WSP Sbjct: 392 GKVLQLVSTDGRFKARLPGNDGQVKFPAWSP 422 >gi|238797730|ref|ZP_04641224.1| hypothetical protein ymoll0001_12380 [Yersinia mollaretii ATCC 43969] gi|238718371|gb|EEQ10193.1| hypothetical protein ymoll0001_12380 [Yersinia mollaretii ATCC 43969] Length = 386 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 95/369 (25%), Positives = 172/369 (46%), Gaps = 18/369 (4%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++ +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 9 EIGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGS 67 Query: 124 LRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L D ++ + + W R AHT SD++++ +TG KG F +RI +V Sbjct: 68 YVVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVV 127 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ G + L V D DG N +++ Q L P +SP+ K+AY T+ E + Sbjct: 128 QTN-GGKFPHELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKIAYVTF--ESGKSALV 183 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 184 IQTLANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGR 243 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQ 357 N S+ PDS + + SD+ G+ Q+Y + NG +RI SQ++ A SP Sbjct: 244 SNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-----SPD 298 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + +G I ++L + + P+ +P+G +I+S + G+ Sbjct: 299 GKFLVLVSSNGGAQHIAKQDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAV 356 Query: 418 LYSIDLNGR 426 L + +GR Sbjct: 357 LQLVSTDGR 365 >gi|87118952|ref|ZP_01074850.1| tolB protein [Marinomonas sp. MED121] gi|86165343|gb|EAQ66610.1| tolB protein [Marinomonas sp. MED121] Length = 421 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/388 (23%), Positives = 188/388 (48%), Gaps = 6/388 (1%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 +++ + + P+++ + D L V++++ DL+RS +F I + + + + Sbjct: 15 IEITSGADQLLPLAVVPFAYEGRDGLPEDVAQIIENDLKRSGLFEAIPRTNMLSLPSKKE 74 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKI 154 + F+DW L + +V G V + + + F L +V +K + + S R Sbjct: 75 DV-HFRDWRLLKSDYVVIGDVKQIDANNFEINFELINVLSQKTVEKHTGLAVKVSGLRDA 133 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH ISD IY+ +TG +G F++RIL+V+ L V D DG + + S++ IL Sbjct: 134 AHYISDKIYRLLTGVRGAFSTRILYVTAEGNRAEPTYRLQVADADGHRPQVIVESKEPIL 193 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +S N + + Y + D +++ + + ++I +R + AP +S +GK+ + Sbjct: 194 -SPSWSRNGRFITYVMFRDRRP-NIFVQELATGKR-QKIAQYRGLNGAPAWSPDGKQLAL 250 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD +IY +D+ + +R+TN I+ S+ PD IVF SDR G Q+Y + + Sbjct: 251 VLSKDGNPEIYVLDIATQKLQRITNHYSIDTEPSWEPDGKGIVFTSDRGGNPQIYRVDIS 310 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +R++ + + + + +P G + + + + I + + ++L E ++ Sbjct: 311 SKAVERVTFEGDLNTRARM-TPDGRYLVTVQKNEGNYHIALQDMKNGRVQILTETYLDES 369 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 P+ +P+G ++++ G + S+D Sbjct: 370 PSIAPNGSMVMYATTYKGKGILAVVSVD 397 >gi|188534420|ref|YP_001908217.1| translocation protein TolB [Erwinia tasmaniensis Et1/99] gi|226705882|sp|B2VBQ7|TOLB_ERWT9 RecName: Full=Protein tolB; Flags: Precursor gi|188029462|emb|CAO97339.1| Protein TolB (translocation of group A colicins) [Erwinia tasmaniensis Et1/99] Length = 430 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 213/448 (47%), Gaps = 38/448 (8%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKF----VSIDELGGKVSE 67 ++ L +L++ + HA V++ T N + P+ + K+ + +++GG Sbjct: 6 RVALSVLMLFV-----AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPEDIGG---- 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLR 125 +V+ DL+ S FN I + Q+ P S+ Q W +LG +V G+V Sbjct: 57 IVAADLRNSGKFNPIDRARLPQQ---PTSVAEVQPAAWTALGIDAVVVGQVQPGADGSYT 113 Query: 126 VEFRLWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V ++L D + ++ + F W R AH+ SD+ ++ +T KG F +RI +V ++ Sbjct: 114 VSYQLVDTSGNPGAVLAQNQFKVTKQWLRYAAHSASDESFEKLTAIKGAFRTRIAYVVQT 173 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G L V D DG N +++ Q L P +SP+ KVAY T+ E ++ Sbjct: 174 N-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQ 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 T + A +++ +F AP FS +G + ++ K +++IY +D+ S ++T+ + Sbjct: 230 TLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNIYVMDIGSGQISQITDGRYN 289 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ + + V S ++ Sbjct: 290 STEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWEGAQNQDADVSSDGKSMVMI 349 Query: 364 TKFSGEKFAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + SG + V ++D G+ ++L D+ L + P+ +P+G +I+S + GS L Sbjct: 350 STNSGAQH---VARQDLVTGAVQKL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQ 402 Query: 420 SIDLNGR-NETLINTPAYASDPQWVGFM 446 + +GR L T P W ++ Sbjct: 403 LVSTDGRFKARLPATDGQVKFPAWSPYL 430 >gi|325498077|gb|EGC95936.1| translocation protein TolB [Escherichia fergusonii ECD227] Length = 431 Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 182/417 (43%), Gaps = 56/417 (13%) Query: 32 IHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + S P+ + K+ + +VS DL+ S FN + + Q Sbjct: 20 LHAEVRIVIDGGVDSGRPIGVVPFKWAGPGAAPEDIGGIVSDDLRYSGKFNPLDRARLPQ 79 Query: 90 KITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFS 146 + P S Q W++L +V G+V V ++L D ++ + F Sbjct: 80 Q---PASAQEVQPAAWSALAIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSFK 136 Query: 147 SPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 W R AHT+SD++++ +TG KG F +R+ +V ++ G L V D DG N + Sbjct: 137 VNKQWLRYAAHTVSDEVFEKLTGIKGAFRTRLAYVVQTN-GGQFPYELRVSDYDGYN-PF 194 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP F Sbjct: 195 VVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSELVIQTLANGAIRKVASFPRHNGAPAF 252 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Sbjct: 253 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFTSDQAGR 312 Query: 326 EQLYVMQSNGSDQKRIS------QDKEAS------------------------------- 348 Q+Y + NG +RI+ QD + S Sbjct: 313 PQVYKVNINGGAPQRITWEGTQNQDADVSSDGKFMVMVSSDGGKQHIAKQDLVTGGVQVL 372 Query: 349 ---YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 373 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 429 >gi|324114315|gb|EGC08284.1| tol-Pal system beta propeller TolB [Escherichia fergusonii B253] Length = 430 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 182/417 (43%), Gaps = 56/417 (13%) Query: 32 IHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + S P+ + K+ + +VS DL+ S FN + + Q Sbjct: 19 LHAEVRIVIDGGVDSGRPIGVVPFKWAGPGAAPEDIGGIVSDDLRYSGKFNPLDRARLPQ 78 Query: 90 KITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFS 146 + P S Q W++L +V G+V V ++L D ++ + F Sbjct: 79 Q---PASAQEVQPAAWSALAIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSFK 135 Query: 147 SPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 W R AHT+SD++++ +TG KG F +R+ +V ++ G L V D DG N + Sbjct: 136 VNKQWLRYAAHTVSDEVFEKLTGIKGAFRTRLAYVVQTN-GGQFPYELRVSDYDGYN-PF 193 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP F Sbjct: 194 VVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSELVIQTLANGAIRKVASFPRHNGAPAF 251 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Sbjct: 252 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFTSDQAGR 311 Query: 326 EQLYVMQSNGSDQKRIS------QDKEAS------------------------------- 348 Q+Y + NG +RI+ QD + S Sbjct: 312 PQVYKVNINGGAPQRITWEGTQNQDADVSSDGKFMVMVSSDGGKQHIAKQDLVTGGVQVL 371 Query: 349 ---YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 372 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 428 >gi|78189865|ref|YP_380203.1| TolB protein, putative [Chlorobium chlorochromatii CaD3] gi|119371039|sp|Q3APB5|TOLB_CHLCH RecName: Full=Protein tolB; Flags: Precursor gi|78172064|gb|ABB29160.1| TolB protein, putative [Chlorobium chlorochromatii CaD3] Length = 440 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 32/354 (9%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS 159 F+ +S+G G + G + + ++ ++++V K + GK++ + + R ++H S Sbjct: 103 FKALDSIGGAFYAVGTLSSSGGE-ITLDGQVFEVATGKVLFGKRYRGTESQLRALSHAFS 161 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D+ + +TG+K F S+I+F+S S I + C D DGAN+ LT R I P Sbjct: 162 GDVVEFLTGKKSVFGSQIVFISNKSGSKEIYS--C--DFDGANVHQLTNFRS-IALTPAL 216 Query: 220 SPNQQKVAYATY-DDEDILRVYLMDT-RIDRAPKRIGNF------RSMILAPRFSSNGKR 271 SP+ +A+ + + L + + T + R K+ GN S LA FS G + Sbjct: 217 SPDGAYLAFTDFTGGKPALAIRELATGKTTRVAKK-GNSIDPAWRNSRELATTFSFEGDQ 275 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++Y +D +RLT++ I++S ++SPD ++ F S R G Q++V Sbjct: 276 -----------ELYLLDSAGAVKQRLTSSSGIDLSPTFSPDGRKMAFVSARSGNPQIFVY 324 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQ-ERLLVED 389 + +R++ + P WSP GD IAF+ + SG + I V+ DGS +L + Sbjct: 325 DFSSGKSQRLTFSGRYNT-QPAWSPIGDKIAFSTWESGGEINIFVINTDGSGLTQLTTQS 383 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 ++P+WSP GR ++F+ + G KLY + +G+N+ L+ + P W Sbjct: 384 GENESPSWSPDGRMIVFASNRQGV--KKLYVMMADGKNQRPLLAIGGEQTQPSW 435 >gi|218549687|ref|YP_002383478.1| translocation protein TolB [Escherichia fergusonii ATCC 35469] gi|226705883|sp|B7LKL8|TOLB_ESCF3 RecName: Full=Protein tolB; Flags: Precursor gi|218357228|emb|CAQ89863.1| periplasmic protein [Escherichia fergusonii ATCC 35469] Length = 430 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 182/417 (43%), Gaps = 56/417 (13%) Query: 32 IHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + S P+ + K+ + +VS DL+ S FN + + Q Sbjct: 19 LHAEVRIVIDGGVDSGRPIGVVPFKWAGPGAAPEDIGGIVSDDLRYSGKFNPLDRARLPQ 78 Query: 90 KITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFS 146 + P S Q W++L +V G+V V ++L D ++ + F Sbjct: 79 Q---PASAQEVQPAAWSALAIDAVVVGQVTPNPDGSYNVTYQLVDTGGAPGTVLAQNSFK 135 Query: 147 SPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 W R AHT+SD++++ +TG KG F +R+ +V ++ G L V D DG N + Sbjct: 136 VNKQWLRYAAHTVSDEVFEKLTGIKGAFRTRLAYVVQTN-GGQFPYELRVSDYDGYN-PF 193 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP F Sbjct: 194 VVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSELVIQTLANGAIRKVASFPRHNGAPAF 251 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Sbjct: 252 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFTSDQAGR 311 Query: 326 EQLYVMQSNGSDQKRIS------QDKEAS------------------------------- 348 Q+Y + NG +RI+ QD + S Sbjct: 312 PQVYKVNINGGAPQRITWEGTQNQDADVSSDGKFMVMVSSDGGKQHIAKQDLVTGGVQVL 371 Query: 349 ---YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 372 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 428 >gi|311280380|ref|YP_003942611.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cloacae SCF1] gi|308749575|gb|ADO49327.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cloacae SCF1] Length = 430 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 102/421 (24%), Positives = 185/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRS 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P + Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGTAQEVQPAAWSALGIDAVVVGQVTPNPDGSYTVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSSQPLMSPAWSPDGAKLAYVTF--ESGRSALVIQTLANGAVRQVASFPQHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y ++L S ++TN N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMNLASGQITQVTNGRSNNTEPNWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNVNGGAPQRITWEGSQNQDADVSADGKFLVMVSSANGQQHIAKQDLAAGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|238752127|ref|ZP_04613610.1| hypothetical protein yrohd0001_550 [Yersinia rohdei ATCC 43380] gi|238709704|gb|EEQ01939.1| hypothetical protein yrohd0001_550 [Yersinia rohdei ATCC 43380] Length = 386 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 174/369 (47%), Gaps = 18/369 (4%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 +V +V+ DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 9 EVGAIVAADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGS 67 Query: 124 LRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L D ++ + + W R AHT SD++++ +TG KG F +RI +V Sbjct: 68 YVVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVV 127 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ G + L V D DG N +++ + L P +SP+ K+AY T+ E + Sbjct: 128 QTN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTF--ESGKSALV 183 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T + A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ Sbjct: 184 IQTLANGAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLASGQISQVTDGR 243 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQ 357 N S+ PDS + + SD+ G+ Q+Y + NG +RI SQ++ A SP Sbjct: 244 SNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-----SPD 298 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + +G I + ++L + + P+ +P+G +I+S + G+ Sbjct: 299 GKFLVLVSSNGGAQHIAKQDLETGAVQVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGAV 356 Query: 418 LYSIDLNGR 426 L + +GR Sbjct: 357 LQLVSTDGR 365 >gi|291085672|ref|ZP_06353704.2| Tol-Pal system beta propeller repeat protein TolB [Citrobacter youngae ATCC 29220] gi|291070094|gb|EFE08203.1| Tol-Pal system beta propeller repeat protein TolB [Citrobacter youngae ATCC 29220] Length = 431 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/417 (23%), Positives = 182/417 (43%), Gaps = 56/417 (13%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVGADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFS 146 + P + Q W++LG +V G+V V ++L D ++ + + Sbjct: 80 Q---PGTAAEVQPAAWSALGIDAVVVGQVTPNPDGSYSVAYQLVDTGGAPGTVLAQNTYK 136 Query: 147 SPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 W R HT SD++++ +TG KG F +RI +V ++ G L V D DG N ++ Sbjct: 137 VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QF 194 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP F Sbjct: 195 VVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAF 252 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + F SD+ G+ Sbjct: 253 SPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR 312 Query: 326 EQLYVMQSNGSDQKRI----SQDKEA---------------------------------- 347 Q+Y + NG +RI SQ+++A Sbjct: 313 PQVYKVNVNGGAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAGGVQVL 372 Query: 348 --SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 373 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 429 >gi|183598188|ref|ZP_02959681.1| hypothetical protein PROSTU_01566 [Providencia stuartii ATCC 25827] gi|188020354|gb|EDU58394.1| hypothetical protein PROSTU_01566 [Providencia stuartii ATCC 25827] Length = 430 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 180/391 (46%), Gaps = 20/391 (5%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK-ITNPDSI 97 NSA P+ + K+ ++ ++V DL+ S FN I Q+ T + + Sbjct: 30 GVNSAQ--PIGVVPFKWSGSGTPPQEIGQIVGADLRNSGKFNPIEPSRMPQQPATASEVV 87 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIA 155 P + W +LG +V G++ V ++L DV ++ + + W R A Sbjct: 88 P--EAWTALGINAVVVGQIQPAADGSYVVSYQLVDVAGSPGTVLSQNQYKVTKEWLRYAA 145 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG +G F +RI +V + G L V D DG N ++ + L Sbjct: 146 HTASDEVFEKLTGIRGAFRTRIAYVVTNK-GGQYPYELRVSDYDGYN-QFTVHRSPEPLM 203 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ +++AY T++ ++ T A +++ +F AP FS +G + + Sbjct: 204 SPTWSPDGERLAYVTFESGS--SALVIQTLSTGAVRQVASFPRHNGAPAFSPDGTKLAFA 261 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N S+ PDS +V+ SD+ G+ Q+Y + NG Sbjct: 262 LSKTGSLNLYIMDLASGQIRQVTDGRSNNTEPSWMPDSQTLVYTSDQAGRPQIYKINING 321 Query: 336 SDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +R+ +Q+++A SP G I G + I L + Sbjct: 322 GSPERVTWEGTQNQDADV-----SPDGSFIVMVSSGGGQQHIAKQDLATGNVEYLTKTFL 376 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + P+ +P+G +I+S + T +L S D Sbjct: 377 DETPSIAPNGTMVIYSSSQGLGTILQLVSTD 407 >gi|242238602|ref|YP_002986783.1| translocation protein TolB [Dickeya dadantii Ech703] gi|242130659|gb|ACS84961.1| Tol-Pal system beta propeller repeat protein TolB [Dickeya dadantii Ech703] Length = 428 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 113/438 (25%), Positives = 198/438 (45%), Gaps = 59/438 (13%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE----V 68 +KI L L++ + +HA V++ S IA F S GG V E + Sbjct: 5 LKIALSFLML-----WAAVLHAEVRIEITQGVDSARPIAVVPFKSA---GGAVPEDIGNI 56 Query: 69 VSKDLQRSDVFNLISQDSFKQKI-TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ DL+ S FN I Q+ T + P W +LG ++ G+V + D + Sbjct: 57 VAADLRNSGKFNPIDPSRMPQQPGTAAEVTPA--AWTALGIDAVIVGQV-QPTADGYLIS 113 Query: 128 FRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++L D ++ + F W R AHT SD+++Q +TG KG F +RI +V ++ Sbjct: 114 YQLVDTSGSAGSVLAQNQFKVTRQWLRYAAHTASDEVFQKLTGIKGAFRTRIAYVVQTN- 172 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G L V D DG N +++ + L P +SP+ K+AY T+ E ++ T Sbjct: 173 GGQYPYELRVADYDGYN-QFVVHRSPEPLMSPSWSPDGSKLAYVTF--ESGRSALVIQTL 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N Sbjct: 230 ANGDIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQITDGRSNNT 289 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASYFDPVWSPQGD 359 ++ PDS + + SD+ G+ Q+Y + +NG +R++ QD E S Sbjct: 290 EPTWFPDSQTLAYTSDQAGRPQIYKIGANGGTPQRLTWEGAQNQDSEVS----------- 338 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQE-----------RLLVEDSNLQAPTWSPSGRSLIFSR 408 S KF + V G+Q ++L + + P+ +P+G +I+S Sbjct: 339 -------SDGKFIVMVSSNSGAQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSS 391 Query: 409 KKDGDTGSKLYSIDLNGR 426 K+ GS L + +GR Sbjct: 392 KQ--GLGSVLQLVSTDGR 407 >gi|322514836|ref|ZP_08067855.1| tol-Pal system beta propeller repeat protein TolB [Actinobacillus ureae ATCC 25976] gi|322119218|gb|EFX91359.1| tol-Pal system beta propeller repeat protein TolB [Actinobacillus ureae ATCC 25976] Length = 426 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 116/405 (28%), Positives = 184/405 (45%), Gaps = 30/405 (7%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLG 107 IA F + + V ++++ DL+ S F + + + P S Q W +G Sbjct: 42 IAVVPFKANGAVPADVGQIIADDLRNSGKFTPVERSRLPAQ---PGSAAEVDSQQWTDIG 98 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQS 165 +V G+V G V ++L D + + + + F+ PA+ R+ AHT+SD +++ Sbjct: 99 VDSVVVGQVTPTGSG-YNVAYQLVDTLSNPAAVFAQGSFNVPAAQIRQGAHTVSDQVFEK 157 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 IT G F ++I +V V G+ L V D DG N + SR+ L P +SP+ + Sbjct: 158 ITQILGAFRTKIAYV---VQRGVSSYELRVSDYDGYNAFTVVKSREP-LMSPEWSPDGSR 213 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +AY T++++ +V + D R +RI R AP FS +G R + +D +DI Sbjct: 214 LAYVTFENKK-AQVVVHDLR--SGSRRIVAALRGHNGAPAFSPDGSRIAFASNQDGELDI 270 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y V +LT N S+SPD S I F SDR G Q+Y M S+G + Sbjct: 271 YVVGANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMG-- 328 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGR 402 SY V S +LI +G+K V+K+D + V S ++P+ SP+G Sbjct: 329 GSGSYNAKVSSDGKNLI---MIAGDK----VVKRDLASGGTEVLSSTFLDESPSISPNGI 381 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+S K T L + +GR L T P W ++ Sbjct: 382 MVIYSSTK--GTSKVLQLVSADGRFKANLPGTGGQFKFPAWSPYL 424 >gi|88705611|ref|ZP_01103321.1| TolB protein precursor [Congregibacter litoralis KT71] gi|88700124|gb|EAQ97233.1| TolB protein precursor [Congregibacter litoralis KT71] Length = 428 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/400 (24%), Positives = 182/400 (45%), Gaps = 53/400 (13%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 +PV++ + ++EVV +D +RS F+ +++ + + + ++DW + Sbjct: 32 TPVAVVPFAWEGAGTAPADMAEVVQEDFERSGQFSPVARADMLGFPSREEEV-FYRDWRA 90 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 + ++ ++ GR EG D L + + L+DV + +I R +AH +SD +Y+ Sbjct: 91 IASEYVLIGRARGEG-DGLSLSYELYDVLRQTRIAEGTVTGPVGEARMLAHRVSDAVYEK 149 Query: 166 ITGEKGDFNSRILFVSESV-VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG G F +R+++VS + +G L + D DGA L SR+ I+ P +SP+ + Sbjct: 150 LTGIPGAFATRLIYVSVTRNPTGKDYYRLTLADSDGARPIVLLESREPIM-SPSWSPDGK 208 Query: 225 KVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +VAY +++ I R L ++ + NFR + +P +S +G + + KD + Sbjct: 209 QVAYVSFETGRPAIFRQVLASGEREQ----LTNFRGLNSSPAWSPDGNSMAMVLSKDGSP 264 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY------------V 330 DIY +D+ S R+T I+ S+ PD +F SDR G+ Q+Y Sbjct: 265 DIYLMDMASRRLTRVTRHYAIDTEPSWMPDGRSFLFTSDRGGRPQIYRYDLRSGLTERVT 324 Query: 331 MQSNGSDQKRISQD---------KEASY---------------------FDPVWSPQGDL 360 + + + + R++QD +E Y P +P G + Sbjct: 325 FEGSYNARARVAQDGRNVVLVHQREGEYQIAIHDLVTNRLQVLTNTDLDESPSIAPNGSM 384 Query: 361 IAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSP 399 + + G++ + + DG + RL +++ P WSP Sbjct: 385 VLYATKYGDRGILSAVSVDGGVKFRLPARSGDVREPAWSP 424 >gi|153824250|ref|ZP_01976917.1| conserved hypothetical protein [Vibrio cholerae B33] gi|126518227|gb|EAZ75452.1| conserved hypothetical protein [Vibrio cholerae B33] Length = 374 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 159/319 (49%), Gaps = 30/319 (9%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P++I K+ +L VS V++ DLQRS F+ + Q + + + F W S+ Sbjct: 14 PIAIVPFKWEGATKLPEDVSAVIASDLQRSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSM 72 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDV--------------KDRKQIIGK------KFFS 146 G L+TG + + + + ++L D+ +D + ++ K K + Sbjct: 73 GVDSLLTGTITQNAEGSYVISYQLVDIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVAT 132 Query: 147 SPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG--IIKNSLCVMDRDGANI 203 PAS R+ AH I+D +Y+ +TGE+G F +RI +V VV+ L + D DG N Sbjct: 133 VPASRMREYAHRIADLVYEELTGERGAFLTRIAYV---VVNDKDPYPYQLRIADYDGYNE 189 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 R + S+ Q L P +SP+ Q +AY ++ + +Y+M+ + +++ +F AP Sbjct: 190 RLVLRSK-QPLMSPAWSPDGQTLAYVSFQNGQA-EIYMMNIYSGKR-EKLTSFPRHNGAP 246 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 RFS +GK + + K + +Y++DL + +T+ N + PD ++F SDR Sbjct: 247 RFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRG 306 Query: 324 GKEQLYVMQSNGSDQKRIS 342 GK Q+Y + +G + KR++ Sbjct: 307 GKPQIYQVNLSGGETKRLT 325 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +S ++SPD + + S + G+ ++Y+M +G +K S + P +SP G +A Sbjct: 200 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNG--APRFSPDGKTLAL 257 Query: 364 TKFSGEKFAIGVMKKDGSQERLL---VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + M D + RL SN P W P G+SLIF+ + G ++Y Sbjct: 258 VLSKTGNLQVYTM--DLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGK--PQIYQ 313 Query: 421 IDLNG 425 ++L+G Sbjct: 314 VNLSG 318 >gi|292487661|ref|YP_003530534.1| protein TolB [Erwinia amylovora CFBP1430] gi|292898898|ref|YP_003538267.1| TolB colicin import protein [Erwinia amylovora ATCC 49946] gi|291198746|emb|CBJ45855.1| TolB colicin import protein [Erwinia amylovora ATCC 49946] gi|291553081|emb|CBA20126.1| Protein tolB precursor [Erwinia amylovora CFBP1430] Length = 430 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 30/444 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGKVSEVVSK 71 ++ L +L++ I HA V++ T N + P+ + K+ + +V+ Sbjct: 6 RVALSVLMLFI-----AVAHAEVRIEITQGVNTARPIGVMPFKWDGPGAAPEDIGAIVAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL+ S FN I + Q+ P S+ Q W +LG ++ G+V V ++ Sbjct: 61 DLRNSGKFNPIDRARLPQQ---PTSVAEVQPAAWTALGIDAVIVGQVQPGADGSYAVSYQ 117 Query: 130 LWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L D + ++ + F W R AHT SD+ ++ +T KG F +RI +V ++ G Sbjct: 118 LVDTSANPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQTN-GG 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + Sbjct: 177 QFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLAN 233 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + + Sbjct: 234 GAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRYNSTEP 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ PDS + + SD+ G+ Q+Y + NG +RI+ + + V + ++ + S Sbjct: 294 TWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWEGAQNQDADVSADGKSMVMISTNS 353 Query: 368 GEKFAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G + V ++D G+ ++L D+ L + P+ +P+G +I+S + GS L + Sbjct: 354 GAQH---VARQDLVTGAVQKL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVST 406 Query: 424 NGR-NETLINTPAYASDPQWVGFM 446 +GR L T P W ++ Sbjct: 407 DGRFKARLPATDGQVKFPAWSPYL 430 >gi|82543167|ref|YP_407114.1| translocation protein TolB [Shigella boydii Sb227] gi|119371060|sp|Q324H2|TOLB_SHIBS RecName: Full=Protein tolB; Flags: Precursor gi|81244578|gb|ABB65286.1| TolB [Shigella boydii Sb227] Length = 430 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/421 (24%), Positives = 185/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPSAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPHPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 G+ Q+Y + NG +RI SQ+++A Sbjct: 308 LAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|56479691|ref|NP_706494.2| translocation protein TolB [Shigella flexneri 2a str. 301] gi|32699693|sp|Q83MM7|TOLB_SHIFL RecName: Full=Protein tolB; Flags: Precursor gi|56383242|gb|AAN42201.2| periplasmic protein [Shigella flexneri 2a str. 301] Length = 430 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/421 (24%), Positives = 185/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPHPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 G+ Q+Y + NG +RI SQ+++A Sbjct: 308 LAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|312171769|emb|CBX80027.1| Protein tolB precursor [Erwinia amylovora ATCC BAA-2158] Length = 430 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 106/423 (25%), Positives = 202/423 (47%), Gaps = 29/423 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGKVSEVVSK 71 ++ L +L++ I HA V++ T N + P+ + K+ + +V+ Sbjct: 6 RVALSVLMLFI-----AVAHAEVRIEITQGVNTARPIGVMPFKWDGPGAAPEDIGAIVAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL+ S FN I + Q+ P S+ Q W +LG ++ G+V V ++ Sbjct: 61 DLRNSGKFNPIDRARLPQQ---PTSVAEVQPAAWTALGIDAVIVGQVQPGADGSYAVSYQ 117 Query: 130 LWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L D + ++ + F W R AHT SD+ ++ +T KG F +RI +V ++ G Sbjct: 118 LVDTSANPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQTN-GG 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG N +++ Q L P +SP+ KVAY T+ E ++ T + Sbjct: 177 QFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTF--ESGKSALVIQTLAN 233 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + + Sbjct: 234 GAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQVTDGRYNSTEP 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ PDS + + SD+ G+ Q+Y + NG +RI+ + + V + ++ + S Sbjct: 294 TWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWEGAQNQDADVSADGKSMVMISTNS 353 Query: 368 GEKFAIGVMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G + V ++D G+ ++L D+ L + P+ +P+G +I+S + GS L + Sbjct: 354 GAQH---VARQDLVTGAVQKL--TDTFLDETPSLAPNGTMVIYSSTQ--GMGSVLQLVST 406 Query: 424 NGR 426 +GR Sbjct: 407 DGR 409 >gi|223673842|pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 171/382 (44%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 33 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDG 89 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R HT SD++++ +TG KG F +RI +V Sbjct: 90 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 150 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSAL 205 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 206 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 265 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 325 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G ++ ++ G + ++ Sbjct: 326 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVLYSSSQGMGSVLNLVST 385 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 386 DGRFKARLPATDGQVKFPAWSP 407 >gi|332096497|gb|EGJ01493.1| tol-Pal system beta propeller repeat protein TolB [Shigella dysenteriae 155-74] Length = 405 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 171/382 (44%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 29 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPGAWSALGIDAVVVGQVTPNPDG 85 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R HT SD++++ +TG KG F +RI +V Sbjct: 86 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 145 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 146 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSAL 201 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 202 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 261 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 262 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 321 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G ++ ++ G + ++ Sbjct: 322 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 381 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 382 DGRFKARLPATDGQVKFPAWSP 403 >gi|332097645|gb|EGJ02620.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii 3594-74] Length = 405 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 171/382 (44%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 29 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPSAWSALGIDAVVVGQVTPNPDG 85 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R HT SD++++ +TG KG F +RI +V Sbjct: 86 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 145 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 146 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSAL 201 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 202 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 261 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 262 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 321 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G ++ ++ G + ++ Sbjct: 322 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 381 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 382 DGRFKARLPATDGQVKFPAWSP 403 >gi|170732122|ref|YP_001764069.1| translocation protein TolB [Burkholderia cenocepacia MC0-3] gi|226705868|sp|B1JWH3|TOLB_BURCC RecName: Full=Protein tolB; Flags: Precursor gi|169815364|gb|ACA89947.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia cenocepacia MC0-3] Length = 431 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 104/442 (23%), Positives = 190/442 (42%), Gaps = 16/442 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA F + L +++ Sbjct: 3 LMTKLGFRALVASCLITAG----SAANAQVNVLITGVGSTQFPIATANFTNEANLPQQIT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I D+ + S+ W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNRDANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRR-YMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G F + V + + ++P+++ +G+ L+++ + G D + Sbjct: 349 SRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDGS 408 Query: 425 GRNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 APPQILSVQGGSVREPSWGPFM 430 >gi|223673843|pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal gi|223673844|pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal gi|223673845|pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 171/382 (44%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 33 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDG 89 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R HT SD++++ +TG KG F +RI +V Sbjct: 90 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 150 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSAL 205 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 206 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 265 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 325 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G ++ ++ G + ++ Sbjct: 326 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 386 DGRFKARLPATDGQVKFPAWSP 407 >gi|145579533|pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX gi|145579535|pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX gi|145579537|pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX gi|145579539|pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX Length = 415 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 171/382 (44%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 33 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDG 89 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R HT SD++++ +TG KG F +RI +V Sbjct: 90 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 150 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSAL 205 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 206 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 265 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 325 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G ++ ++ G + ++ Sbjct: 326 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 386 DGRFKARLPATDGQVKFPAWSP 407 >gi|309786419|ref|ZP_07681045.1| tol-Pal system beta propeller repeat protein TolB [Shigella dysenteriae 1617] gi|308925813|gb|EFP71294.1| tol-Pal system beta propeller repeat protein TolB [Shigella dysenteriae 1617] Length = 405 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 172/382 (45%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 29 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDG 85 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R +HT SD++++ +TG KG F +RI +V Sbjct: 86 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYASHTASDEVFEKLTGIKGAFRTRIAYV 145 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 146 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSAL 201 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 202 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 261 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 262 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 321 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G ++ ++ G + ++ Sbjct: 322 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 381 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 382 DGRFKARLPATDGQVKFPAWSP 403 >gi|193212307|ref|YP_001998260.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobaculum parvum NCIB 8327] gi|193085784|gb|ACF11060.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobaculum parvum NCIB 8327] Length = 434 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 20/343 (5%) Query: 105 SLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 S+GA V V G V K+ D ++ ++WDV K ++ +K+ + R I D+ + Sbjct: 103 SIGADVFVGGSVTKQSGDPA-MQMQVWDVTG-KLLLNRKYSGQDKALRDIGLRFCADLVE 160 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG++ F ++++FVS S +G + +C D DG NIR LT ++ I P SP+ + Sbjct: 161 MLTGKRSVFGTKMVFVSNS--TGQKEIYMC--DFDGTNIRQLTNTKS-ISLTPSVSPDGR 215 Query: 225 KVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 +A+ + L + + T + K+ G + ++P + ++ + + D Sbjct: 216 FLAWTDFSSGRPDLYIKNLSTGSTVSVKKQG----VCISPAWRPGTNECATTLSYEGSQD 271 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y + RLT I +S S+SPD S++ F S REG Q+++ + +R++ Sbjct: 272 LYLIRADGTVARRLTRGHSIEVSPSFSPDGSKMAFVSTREGPPQIFIQDLSSGSVRRLTY 331 Query: 344 DKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPS 400 + P WSP GD I ++ +GE I ++ DGS L + N + P+WSP Sbjct: 332 SGTYNT-QPSWSPSGDKILYSSLQKNGE-INIFMINVDGSNLLQLTSGARNNEYPSWSPD 389 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 G ++FS + G KLY ++++G N+ L+N P W Sbjct: 390 GSMIVFSSTRAGS--RKLYVMNVDGTNQRPLLNMKGEQQQPSW 430 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 5/164 (3%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++ DG R LT I P FSP+ K+A+ + E ++++ D + +R Sbjct: 272 LYLIRADGTVARRLTRGHS-IEVSPSFSPDGSKMAFVS-TREGPPQIFIQDLS-SGSVRR 328 Query: 253 IGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + P +S +G + L S +QK+ ++I+ +++ + +LT+ N S+SP Sbjct: 329 LTYSGTYNTQPSWSPSGDKILYSSLQKNGEINIFMINVDGSNLLQLTSGARNNEYPSWSP 388 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 D S IVF S R G +LYVM +G++Q+ + + + P WS Sbjct: 389 DGSMIVFSSTRAGSRKLYVMNVDGTNQRPL-LNMKGEQQQPSWS 431 >gi|107021875|ref|YP_620202.1| translocation protein TolB [Burkholderia cenocepacia AU 1054] gi|118574572|sp|Q1BYS6|TOLB_BURCA RecName: Full=Protein tolB; Flags: Precursor gi|105892064|gb|ABF75229.1| TolB-like protein [Burkholderia cenocepacia AU 1054] Length = 431 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 104/442 (23%), Positives = 190/442 (42%), Gaps = 16/442 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAG----SAANAQVNVLITGVGSTQFPIATANFTNEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I D+ + S+ W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNRDANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSSTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRR-YMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G F + V + + ++P+++ +G+ ++++ + G D + Sbjct: 349 SRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYVLYATQSGGRNVLAAVPSDGS 408 Query: 425 GRNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 APPQILSVQGGSVREPSWGPFM 430 >gi|253990433|ref|YP_003041789.1| translocation protein TolB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781883|emb|CAQ85047.1| periplasmic protein involved in the tonb-independent uptake of group colicins [Photorhabdus asymbiotica] Length = 451 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/433 (23%), Positives = 186/433 (42%), Gaps = 57/433 (13%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 K+ L +L++ + T HA V++ + P+ I K+ ++ +V Sbjct: 27 KVMLSILMLWV-----TVAHAEVRIEITQGVDSARPIGIVPFKWTGASNAPEEIGTIVGA 81 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I Q+ T + W++LG +V G++ + ++L Sbjct: 82 DLRNSGKFNPIDASRMPQQPTTASEVTP-AAWSALGIDAVVVGQIQPSADGSFLISYQLV 140 Query: 132 DVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D ++ + F W R AHT SD++++ +TG KG F +R+ ++ ++ G Sbjct: 141 DTAGAPGTVLAQNQFKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRLAYIVKTN-GGKY 199 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N ++ + L P +SP+ K+AY T+ E ++ T Sbjct: 200 PYELRVSDYDGYN-QFTVHRSPEPLMSPAWSPDGAKLAYVTF--ESGRSALVIQTLASGE 256 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ Sbjct: 257 VRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLSSAQIRQVTDGRSNNTEPSW 316 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEAS--------------- 348 PD+ +V+ SD+ G+ QLY + NG +R++ QD + S Sbjct: 317 MPDNQTLVYTSDQGGRPQLYKININGGAPQRLTWEGTQNQDADVSADGNFVVMVSSESGK 376 Query: 349 -------------------YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLL 386 + D P +P G ++ ++ G + ++ DG + RL Sbjct: 377 QHIAKQDLATGAVQTLTDTFLDETPSIAPNGTMVIYSSTQGLGTVLQLVSTDGRFKARLP 436 Query: 387 VEDSNLQAPTWSP 399 D ++ P WSP Sbjct: 437 ATDGQVKFPAWSP 449 >gi|307262896|ref|ZP_07544520.1| hypothetical protein appser13_3210 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871801|gb|EFN03521.1| hypothetical protein appser13_3210 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 426 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 186/404 (46%), Gaps = 28/404 (6%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F + + V ++++ DL+ S F + + + + + Q W +G Sbjct: 42 IAVVPFKANGGVPADVGQIIADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVD 100 Query: 110 VLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSIT 167 +V G+V G V ++L D + + ++ + F+ PA+ R+ AHT+SD +++ IT Sbjct: 101 SVVVGQVTPTGGG-YNVAYQLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKIT 159 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F ++I +V V G+ L V D DG N + S++ L P +SP+ ++A Sbjct: 160 QIRGAFRTKIAYV---VQRGVSSYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLA 215 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y T++++ +V + D + + + R AP FS +G R + +D +DIY V Sbjct: 216 YVTFENKK-AQVVVHDL-CSGSRRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVV 273 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 +LT N S+SPD S I F SDR G Q+Y M S+G + Sbjct: 274 GANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMGSSGGGASPMG--GSG 331 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI 405 SY V S +LI +G+K V+K+D + V S ++P+ SP+G +I Sbjct: 332 SYNAKVSSDGKNLI---MIAGDK----VVKRDLASGGTEVLSSTFLDESPSISPNGIMVI 384 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 +S K T L + +GR + N P P W ++ Sbjct: 385 YSSTK--GTSKVLQLVSADGRFKA--NLPGAGGQFKFPAWSPYL 424 >gi|209364240|ref|YP_001425326.2| TolB [Coxiella burnetii Dugway 5J108-111] gi|212213381|ref|YP_002304317.1| TolB [Coxiella burnetii CbuG_Q212] gi|215918884|ref|NP_819142.2| TolB [Coxiella burnetii RSA 493] gi|206583769|gb|AAO89656.2| TolB [Coxiella burnetii RSA 493] gi|207082173|gb|ABS77388.2| TolB [Coxiella burnetii Dugway 5J108-111] gi|212011791|gb|ACJ19172.1| TolB [Coxiella burnetii CbuG_Q212] Length = 440 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 166/364 (45%), Gaps = 14/364 (3%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DLQ S F + + Q + + I + W LV G + G R Sbjct: 60 IPQVIKNDLQNSGQFRVTGSGNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRY 118 Query: 125 RVEFRLWDVKD-RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--- 180 RV F L +V D +++ + F + R +AH ISD IYQ +TG +G F+++I +V Sbjct: 119 RVAFTLINVFDSNNRLLSESFNVNAKELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQ 178 Query: 181 --SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 SE+ + K +L V D DG N + L S D + P +SP+ K+AY +++ Sbjct: 179 ASSENTAA---KYTLEVADADGFNPQPLLVS-DMPIMSPTWSPDGNKIAYVSFEGHRA-A 233 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL D R +R+ + AP FS +GK+ + + K IY ++L +T Sbjct: 234 IYLQDLATGRR-QRLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGHLREIT 292 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I+ ++SPD ++F S+R+G Q+Y R++ + + P + P G Sbjct: 293 KGWSIDTEPAWSPDGKSLLFTSNRDGTPQIYNYSFADGSINRVTYRGDYN-ARPSFMPDG 351 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F I Q ++L E ++P+ +P+G+ I++ + G Sbjct: 352 KSIIMMHRENGLFGIARQDLSTGQVQILSESGTDESPSLAPNGKMAIYAMEYGGRGVLAQ 411 Query: 419 YSID 422 SID Sbjct: 412 VSID 415 >gi|254516703|ref|ZP_05128762.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR5-3] gi|219675126|gb|EED31493.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR5-3] Length = 428 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 187/417 (44%), Gaps = 69/417 (16%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 PT + A V A A +PV +A +VV +D +RS F+ +++ Sbjct: 31 PTPV-AVVPFAWEGAGNAPVDMA---------------QVVQEDFERSGQFSPVNRADML 74 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + + + ++DW ++ ++ ++ GR EG D+L + + L+DV + +I Sbjct: 75 GFPSREEEV-FYRDWRAIASEYVLIGRASGEG-DQLSLRYELYDVLRQARIAEGSVAGPA 132 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGIIKNSLCVMDRDGANIRYLT 207 R +AH +SD +Y+ +TG G F +R+++VS + +G L + D DGA L Sbjct: 133 GEARMLAHRVSDAVYEKLTGIPGAFATRLIYVSVTRNPTGKDYYRLTLADSDGARPIVLL 192 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 SR+ I+ P ++P+ ++VAY +++ I R L ++ + NFR + +P + Sbjct: 193 ESREPIM-SPSWAPDGKQVAYVSFETGRPAIFRQVLATGEREQ----LTNFRGLNSSPAW 247 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + KD + DIY +D+ + R+T+ I+ S+ PD +F SDR G+ Sbjct: 248 SPDGNSMAMVLSKDGSPDIYLMDMATRRLTRVTSHYAIDTEPSWMPDGRSFLFTSDRGGR 307 Query: 326 EQLY------------VMQSNGSDQKRISQD---------KEASY--------------- 349 Q+Y + N + + R++QD +E + Sbjct: 308 PQIYRYDLRSGLTERVTFEGNYNARARVAQDGRNVVLVHQREGEFQIAIHDLVSNRLQVL 367 Query: 350 ------FDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 P +P G ++ + TKF V G + RL + +++ P WSP Sbjct: 368 TNTDLDESPSIAPNGSMVLYATKFGDRGILSAVSVDGGVKFRLPARNGDVREPAWSP 424 >gi|161831311|ref|YP_001596058.1| TolB protein [Coxiella burnetii RSA 331] gi|32699692|sp|Q83F59|TOLB_COXBU RecName: Full=Protein tolB; Flags: Precursor gi|161763178|gb|ABX78820.1| TolB protein [Coxiella burnetii RSA 331] Length = 437 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 166/364 (45%), Gaps = 14/364 (3%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DLQ S F + + Q + + I + W LV G + G R Sbjct: 57 IPQVIKNDLQNSGQFRVTGSGNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRY 115 Query: 125 RVEFRLWDVKD-RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--- 180 RV F L +V D +++ + F + R +AH ISD IYQ +TG +G F+++I +V Sbjct: 116 RVAFTLINVFDSNNRLLSESFNVNAKELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQ 175 Query: 181 --SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 SE+ + K +L V D DG N + L S D + P +SP+ K+AY +++ Sbjct: 176 ASSENTAA---KYTLEVADADGFNPQPLLVS-DMPIMSPTWSPDGNKIAYVSFEGHRA-A 230 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL D R +R+ + AP FS +GK+ + + K IY ++L +T Sbjct: 231 IYLQDLATGRR-QRLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGHLREIT 289 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I+ ++SPD ++F S+R+G Q+Y R++ + + P + P G Sbjct: 290 KGWSIDTEPAWSPDGKSLLFTSNRDGTPQIYNYSFADGSINRVTYRGDYN-ARPSFMPDG 348 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F I Q ++L E ++P+ +P+G+ I++ + G Sbjct: 349 KSIIMMHRENGLFGIARQDLSTGQVQILSESGTDESPSLAPNGKMAIYAMEYGGRGVLAQ 408 Query: 419 YSID 422 SID Sbjct: 409 VSID 412 >gi|330896134|gb|EGH28355.1| translocation protein TolB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 308 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 161/312 (51%), Gaps = 9/312 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVK---VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 INL L+++ F + A K V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIISN 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L+ Sbjct: 62 DLRNSGYYAPIPKQNMISLPTQASEV-IFRDWKALGAQYVMVGNITPAG-GRLQIQYALF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIK 190 +V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ E + Sbjct: 120 NVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L D DGA L SR+ IL PRF+P+ +++AY +++ + R+++ R Sbjct: 180 YTLQRSDYDGARAVTLLQSREPIL-SPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGRR- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 237 EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFG 296 Query: 311 PDSSQIVFESDR 322 D S + F SDR Sbjct: 297 KDGSTLYFTSDR 308 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%) Query: 329 YVMQSNGSDQKR---ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQER 384 Y +Q + D R + Q +E P ++P G IA+ F ++ I V D G +E+ Sbjct: 180 YTLQRSDYDGARAVTLLQSREP-ILSPRFAPDGKRIAYVSFEQKRPRIFVQHIDTGRREQ 238 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + AP WSP G L F KDG+ ++Y I+L R Sbjct: 239 ITNFEGLNGAPAWSPDGSKLAFVLSKDGN--PEIYVINLASR 278 >gi|157146634|ref|YP_001453953.1| translocation protein TolB [Citrobacter koseri ATCC BAA-895] gi|157083839|gb|ABV13517.1| hypothetical protein CKO_02400 [Citrobacter koseri ATCC BAA-895] Length = 431 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 101/421 (23%), Positives = 184/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ S I F + +++GG +V DL+ S FN + + Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGG----IVGADLRNSGKFNPLDRS 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P + Q W++LG +V G+V V ++L D ++ + Sbjct: 76 RLPQQ---PGTAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNVNGGAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|116688823|ref|YP_834446.1| translocation protein TolB [Burkholderia cenocepacia HI2424] gi|254246220|ref|ZP_04939541.1| TolB [Burkholderia cenocepacia PC184] gi|166229976|sp|A0K4X6|TOLB_BURCH RecName: Full=Protein tolB; Flags: Precursor gi|116646912|gb|ABK07553.1| TolB, N-terminal domain protein [Burkholderia cenocepacia HI2424] gi|124870996|gb|EAY62712.1| TolB [Burkholderia cenocepacia PC184] Length = 431 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 104/442 (23%), Positives = 190/442 (42%), Gaps = 16/442 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G ++ +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAG----SAANAQVNVLITGVGSTQFPIATANFTNEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I D+ + S+ W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNI--DAGSTPVPETASV-DLGAWKAKGANAFVAGSVNRDANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRR-YMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 YSPD I F SDR G Q+Y M + G + ++ P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRVSPDGKLLAYI 348 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G F + V + + ++P+++ +G+ ++++ + G D + Sbjct: 349 SRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYVLYATQSGGRNVLAAVPSDGS 408 Query: 425 GRNETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 409 APPQILSVQGGSVREPSWGPFM 430 >gi|194337187|ref|YP_002018981.1| WD40 domain protein beta Propeller [Pelodictyon phaeoclathratiforme BU-1] gi|194309664|gb|ACF44364.1| WD40 domain protein beta Propeller [Pelodictyon phaeoclathratiforme BU-1] Length = 440 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/349 (28%), Positives = 162/349 (46%), Gaps = 22/349 (6%) Query: 100 FQDWNSLGAQVLVTGRV-IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI 158 F S+GA+V G V IK G + ++ +++ + ++ K + R I H Sbjct: 105 FGALTSVGAEVYAGGTVTIKSGM--INLDMSVYETAGSRLLLRKTYTGKEDELRSIGHAF 162 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 D+ +TG+ F S+I+FVS + +G + C D DG + LT SR I P Sbjct: 163 CADLVALLTGKSSVFGSKIVFVSNN--TGYKEIYQC--DFDGYGVEQLTNSR-SITMNPS 217 Query: 219 FSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + +AY + +LR+ + +R +GN + + P + S G ++ Sbjct: 218 LSPDGRHLAYIDFSSGRSVLRIQNLG---ERKTASVGN-SGVSIDPAWRS-GSEVAATLS 272 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 D IY V + RLTN+ I+IS ++SPD S++ F S R G Q+++ Sbjct: 273 FDGNQQIYLVKTDGTLSRRLTNSRSIDISPAFSPDGSKMAFVSSRNGLPQIFIQDIQSGQ 332 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQ-A 394 KR++ + P WSP GD IA+T + +GE I + DGS L Sbjct: 333 VKRLTFSGRYNT-QPSWSPAGDKIAYTTWEKNGE-INIFTVSADGSGLMQLTRRCGENIC 390 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQW 442 P+WSP G+ ++FS + G KLY++D G + L+ + P W Sbjct: 391 PSWSPDGQMIVFSSNRSGK--QKLYTMDSKGDKQRALLQVDGQQTQPSW 437 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 5/162 (3%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 ++ DG R LT SR I P FSP+ K+A+ + + + ++++ D + + KR+ Sbjct: 281 LVKTDGTLSRRLTNSR-SIDISPAFSPDGSKMAFVSSRN-GLPQIFIQDIQSGQV-KRLT 337 Query: 255 NFRSMILAPRFSSNG-KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 P +S G K A + +K+ ++I++V + +LT NI S+SPD Sbjct: 338 FSGRYNTQPSWSPAGDKIAYTTWEKNGEINIFTVSADGSGLMQLTRRCGENICPSWSPDG 397 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 IVF S+R GK++LY M S G Q+ + Q + P WS Sbjct: 398 QMIVFSSNRSGKQKLYTMDSKGDKQRALLQ-VDGQQTQPSWS 438 >gi|271499764|ref|YP_003332789.1| Tol-Pal system beta propeller repeat-containing protein TolB [Dickeya dadantii Ech586] gi|270343319|gb|ACZ76084.1| Tol-Pal system beta propeller repeat protein TolB [Dickeya dadantii Ech586] Length = 428 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 115/442 (26%), Positives = 200/442 (45%), Gaps = 26/442 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE----V 68 +KI L L++ + +HA V++ S I F S GG V E + Sbjct: 5 LKIALSFLML-----WTAVLHAEVRIEITQGVDSARPIGVVPFKST---GGAVPEEIGSI 56 Query: 69 VSKDLQRSDVFNLISQDSFKQKI-TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ DL+ S FN I Q+ T + P W +LG +V G+V + D V Sbjct: 57 VAADLRNSGKFNPIDPSRMPQQPGTAAEVTP--SAWTALGIDAVVVGQV-QPTADGYLVS 113 Query: 128 FRLWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++L D + ++ + F W R AHT SD++++ +TG KG F +RI +V ++ Sbjct: 114 YQLVDTSGNAGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN- 172 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G L V D DG N +++ + L P +SP+ K+AY T+ E ++ T Sbjct: 173 GGQYPYELRVADYDGYN-QFVVHRSPEPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTL 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + ++I +F AP FS +G + ++ K ++++Y ++L S ++T+ N Sbjct: 230 ANGDIRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNT 289 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++ PDS + + SD+ G+ Q+Y + NG +R++ + A D S G + Sbjct: 290 EPTWFPDSQTLAYTSDQAGRPQIYKIGINGGAPQRLTWEG-AQNQDAEISSDGKFLVMVS 348 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +G I ++L + + P+ +P+G +I+S K+ GS L + +G Sbjct: 349 SNGGAQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLVSTDG 406 Query: 426 R-NETLINTPAYASDPQWVGFM 446 R L T P W +M Sbjct: 407 RFKARLPATDGQVRFPTWSPYM 428 >gi|165975760|ref|YP_001651353.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226705862|sp|B0BT52|TOLB_ACTPJ RecName: Full=Protein tolB; Flags: Precursor gi|165875861|gb|ABY68909.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 426 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 186/404 (46%), Gaps = 28/404 (6%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F + + V ++++ DL+ S F + + + + + Q W +G Sbjct: 42 IAVVPFKANGGVPADVGQIIADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVD 100 Query: 110 VLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSIT 167 +V G+V G V ++L D + + ++ + F+ PA+ R+ AHT+SD +++ IT Sbjct: 101 SVVVGQVTPTGGG-YNVAYQLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKIT 159 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F ++I +V V G+ L V D DG N + S++ L P +SP+ ++A Sbjct: 160 QIRGAFRTKIAYV---VQRGVSSYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLA 215 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y T++++ +V + D R + + + R AP FS +G R + +D +DIY V Sbjct: 216 YVTFENKK-AQVVVHDLR-SGSRRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVV 273 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 +LT N S+SPD S I F SDR G Q+Y M +G + Sbjct: 274 GANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMGLSGGGASPMG--GSG 331 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI 405 SY V S +LI +G+K V+K+D + V S ++P+ SP+G +I Sbjct: 332 SYNAKVSSDGKNLI---MIAGDK----VVKRDLASGGTEVLSSTFLDESPSISPNGIMVI 384 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 +S K T L + +GR + N P P W ++ Sbjct: 385 YSSTK--GTSKVLQLVSADGRFKA--NLPGAGGQFKFPAWSPYL 424 >gi|251772667|gb|EES53231.1| putative TolB protein [Leptospirillum ferrodiazotrophum] Length = 438 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 20/312 (6%) Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 I+ K + + + + H DDI G +G SRI F+ + L MD Sbjct: 136 ILLDKIYRTSGKYALVVHKFVDDILFQFAGIRGVATSRIAFIGRTSHG----YDLFTMDF 191 Query: 199 DGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI-GNF 256 DG N R +T D +L F P +S N+ + Y TY + ++D + R + + ++ Sbjct: 192 DGENTRRMT--FDNVLAFNPAWSHNKHHILYVTYLHGE---PQIIDYDLVRGQRHLLFSY 246 Query: 257 RSMILAPRFSSNGKRALISVQK---DEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + + P FS +GKR +++ + + IY + ERLT + N+S ++SP Sbjct: 247 PGLNITPTFSPDGKRLAVALSRGRPSQHTQIYLYAFATKHLERLTYSRSNNLSPTFSPSG 306 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG-EKF 371 + + F SDR+G Q+++M S+GS+ R++ + SY P WSP+GD IA+ + + Sbjct: 307 NALAFVSDRDGHPQIFLMDSDGSNVHRLTFN--GSYNVAPAWSPRGDWIAYVCMNDMHRP 364 Query: 372 AIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 I ++ DG+ ++ + +P+WSP GR L+++R+ G + ID +GR E L Sbjct: 365 KICLISPDGTSRVMITQGPGRDDSPSWSPDGRFLVYTRQIRGHSKLAKIWIDGHGR-EFL 423 Query: 431 INTPAYASDPQW 442 N P W Sbjct: 424 GNYSRSVLTPSW 435 >gi|113460408|ref|YP_718470.1| translocation protein TolB [Haemophilus somnus 129PT] gi|123031156|sp|Q0I1N1|TOLB_HAES1 RecName: Full=Protein tolB; Flags: Precursor gi|112822451|gb|ABI24540.1| biopolymer transport protein [Haemophilus somnus 129PT] Length = 434 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 52/397 (13%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD-WNS 105 P++I K+ D + V++++S DL+ S FN I+ QK T+ + D W+S Sbjct: 41 PIAIIPFKWNGSDSMPIDVADIISADLRNSGKFNPIAVSKMPQKPTSASEV--ISDVWSS 98 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDV----KDRKQIIGKKFFSSPASWRKI-AHTISD 160 LG +V G+V K + ++L D + +++ + ++ P + ++ AHTISD Sbjct: 99 LGIDAVVVGQVTPNEKG-YSIAYQLVDTIGASGNAGEVLSQNQYAVPKNAIRLGAHTISD 157 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++++ +T +G F ++I +V + G + V D DG N +++ S Q L P +S Sbjct: 158 EVFEKLTAIRGAFRTKIAYVVQKH-GGSKPYQVRVADYDGHN-QFIVYSSSQPLMSPAWS 215 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKD 279 P+ K+AY ++++ + L+ + +R I F AP FS +G + + KD Sbjct: 216 PDGSKLAYVSFENR---KSQLIVHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFASSKD 272 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD-- 337 ++IY ++L + +LT+ N S+SPD I+F SDR G Q+Y M G+ Sbjct: 273 GVLNIYVMNLGNGTISQLTSGAGNNTEPSWSPDGQSIIFTSDRAGGPQIYQMDVFGNGIS 332 Query: 338 --------QKRISQDK------------------------EASYFD--PVWSPQGDLIAF 363 +IS D +++ D P SP G +I + Sbjct: 333 LVSAGRGYSGKISADGSILVMIYGDNIVKKDLATGVTEMLSSTFLDESPSISPNGIMIIY 392 Query: 364 TKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + G + ++ DG + RL D ++ P WSP Sbjct: 393 SSTQGLGKVLQLVSADGRFKARLPSSDGQIKFPAWSP 429 >gi|304413883|ref|ZP_07395300.1| translocation protein [Candidatus Regiella insecticola LSR1] gi|304283603|gb|EFL91998.1| translocation protein [Candidatus Regiella insecticola LSR1] Length = 433 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 184/373 (49%), Gaps = 27/373 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++ +V+ DL+ S FN I + ++ ++ + I W++LG +V G++ + Sbjct: 56 IAAIVAADLRNSGKFNPIDKTRMPERPSSAEEITP-SAWSALGINAVVIGQIQPSVEGHY 114 Query: 125 RVEFRLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + ++L D K ++ + + W R +HT SD+I++ +TG KG F +RI ++ + Sbjct: 115 LISYQLVDTSGTVKTVLAQNQYKIKQQWLRHASHTASDEIFEKLTGIKGAFRTRIAYIVQ 174 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + L V D DG N +++ + L P +SP+ K+AY T+ E ++ Sbjct: 175 -IHDKQRPYELRVADYDGHN-QFVVHRSAEPLMSPAWSPDGSKIAYVTF--ESGQSALVV 230 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + + I +F AP FS +G + ++ K +++IY +DL S ++T++ Sbjct: 231 QTLANSGIREIASFPRHNGAPAFSPDGSKLAFALSKSGSLNIYLMDLASGHITQITDSRS 290 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASYFDPVWSP 356 N S+ PDS + + SD+ G+ Q+Y + N +RI+ QD E S+ Sbjct: 291 NNTEPSWFPDSQNLAYTSDQGGRPQVYKININQRAPERITWQGAQNQDVEVSH------- 343 Query: 357 QGDLIAFTKF-SGEKFAIGVMKKDGSQERL-LVEDSNL-QAPTWSPSGRSLIFSRKKDGD 413 G +A SG + ++K+D S + ++ DS L + P+ SP+G +I+S K G Sbjct: 344 DGKFMALVASNSGNQH---IVKQDLSTGAVQVLTDSFLDETPSISPNGLMIIYSSTKRG- 399 Query: 414 TGSKLYSIDLNGR 426 GS L + +GR Sbjct: 400 VGSVLQLVSTDGR 412 >gi|260772527|ref|ZP_05881443.1| TolB protein precursor [Vibrio metschnikovii CIP 69.14] gi|260611666|gb|EEX36869.1| TolB protein precursor [Vibrio metschnikovii CIP 69.14] Length = 450 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 112/432 (25%), Positives = 194/432 (44%), Gaps = 40/432 (9%) Query: 41 NSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF 100 NSA P++I K+ L +S V++ DLQRS F+ I+ D Q + + F Sbjct: 33 NSAR--PIAIVPFKWEGKTPLPEDISAVIASDLQRSGKFSPIATDRMPQTPYSETEV-TF 89 Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK--------------------DRKQII 140 W +G L+TG + + + ++L DV + ++ Sbjct: 90 DAWTRIGVDALLTGSITLNQQGNYVINYQLVDVVRGQLTQGQSRALSADGQLVLSKDHVL 149 Query: 141 GKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS----LCV 195 K + PA R+ AH ISD +Y+ +TGEKG F +RI +V VV+ K+S L V Sbjct: 150 FNKVATIPAPRMREYAHRISDLVYEELTGEKGAFLTRIAYV---VVND--KDSFPYQLRV 204 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N R + S+ Q L P +SP+ +++AY ++ + +++MD +++ + Sbjct: 205 ADYDGYNERLVLRSK-QPLMSPAWSPDGRQLAYVSFQNGQA-EIFIMDIYTGER-EKLTS 261 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + APRFS +GK + + K + +Y++DL S ++T+ N + PD Sbjct: 262 YPRHNGAPRFSPDGKTLALVLSKTGTLQVYTLDLASRKLTQITHGRSNNTEPFWHPDGKS 321 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 ++F SDR G Q+Y + R++ + + +P G + S F I Sbjct: 322 LIFTSDRGGNPQIYRVNLANQAVDRLTWQGRQNLGGQI-TPDGRFMIMVNRSNSGFHIAK 380 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTP 434 + ++L + ++P+ +P+G +I+S + + SID GR L T Sbjct: 381 QDLETGALQVLTQTLLDESPSIAPNGGMVIYSSMYNQANVLSMVSID--GRFKARLPATN 438 Query: 435 AYASDPQWVGFM 446 P W F+ Sbjct: 439 GRVRSPAWSPFL 450 >gi|85058864|ref|YP_454566.1| translocation protein TolB [Sodalis glossinidius str. 'morsitans'] gi|119371063|sp|Q2NUL4|TOLB_SODGM RecName: Full=Protein tolB; Flags: Precursor gi|84779384|dbj|BAE74161.1| colicin import protein TolB [Sodalis glossinidius str. 'morsitans'] Length = 430 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 112/437 (25%), Positives = 190/437 (43%), Gaps = 32/437 (7%) Query: 26 GFF---PTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 GFF + +HA V++ P+ + K+ + +V+ DL+ S FN Sbjct: 10 GFFLLWASVLHAEVRIEITQGVDTARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFN 69 Query: 81 ------LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 L Q + ++T P W +LG +V G+V V ++L D Sbjct: 70 PLDTSRLPQQPATASEVTPPA-------WTALGIDAVVVGQVQPSAAGSYVVSYQLVDTS 122 Query: 135 -DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + I+ + F W R AHT SD+ ++ +TG KG F +RI +V ++ G + Sbjct: 123 GNPGSILAQNQFKVARKWLRYAAHTASDETFEKLTGIKGAFRTRIAYVVQTN-GGQYRYE 181 Query: 193 LCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N TP Q L P +SP+ K+AY T+ E ++ T A Sbjct: 182 LRVADYDGFN---QTPVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLDSGAI 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ +F AP FS +G + + K M++Y +DL S ++T N S+ Sbjct: 237 RQVASFPQHNGAPAFSPDGSKLAFVLSKTGNMNLYVMDLGSGQVRQVTEGRSNNTEPSWF 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PDS + + SD+ G+ Q+Y NG +R+S + + V SP G + + Sbjct: 297 PDSQTLAYTSDQGGRPQVYKTNINGGTPQRLSWEGSQNQNADV-SPDGKFLVMVSTNNGA 355 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NET 429 I + + ++L + + P+ +P+G +I+S + GS L + +GR Sbjct: 356 QHIAKLDLATNAVQVLTDTFLDETPSVAPNGTMVIYSATQ--GLGSVLQLVSTDGRFKAR 413 Query: 430 LINTPAYASDPQWVGFM 446 L T +P W ++ Sbjct: 414 LPATDGQVKNPAWSPYL 430 >gi|170717585|ref|YP_001783488.1| translocation protein TolB [Haemophilus somnus 2336] gi|189035983|sp|B0UVJ6|TOLB_HAES2 RecName: Full=Protein tolB; Flags: Precursor gi|168825714|gb|ACA31085.1| Tol-Pal system beta propeller repeat TolB [Haemophilus somnus 2336] Length = 434 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 52/397 (13%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD-WNS 105 P++I K+ D + V++++S DL+ S FN I+ QK T+ + D W+S Sbjct: 41 PIAIIPFKWNGSDSMPIDVADIISADLRNSGKFNPIAVSKMPQKPTSASEV--ISDVWSS 98 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDV----KDRKQIIGKKFFSSPASWRKI-AHTISD 160 LG +V G+V K + ++L D + +++ + ++ P + ++ AHTISD Sbjct: 99 LGIDAVVVGQVTPNEKG-YSIAYQLVDTIGASGNSGEVLSQNQYAVPKNAIRLGAHTISD 157 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++++ +T +G F ++I +V + G + + D DG N +++ S Q L P +S Sbjct: 158 EVFEKLTAIRGAFRTKIAYVVQKN-GGSKPYQVRIADYDGHN-QFIVYSSSQPLMSPAWS 215 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKD 279 P+ K+AY ++++ + L+ + +R I F AP FS +G + + KD Sbjct: 216 PDGSKLAYVSFENR---KSQLIVHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFASSKD 272 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++IY ++L + +LT+ N S+SPD I+F SDR G Q+Y M G+ Sbjct: 273 GVLNIYVMNLGNGTISQLTSGAGNNTEPSWSPDGQSIIFTSDRAGGPQIYQMDVVGNGVS 332 Query: 340 RISQDK----------------------------------EASYFD--PVWSPQGDLIAF 363 +S + +++ D P SP G +I + Sbjct: 333 LVSAGRGYSGKISADGSILVMIYGDNIVKKDLATGVTEMLSSTFLDESPSISPNGIMIIY 392 Query: 364 TKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + G + ++ DG + RL D ++ P WSP Sbjct: 393 SSTQGLGKVLQLVSADGRFKARLPSSDGQIKFPAWSP 429 >gi|237730721|ref|ZP_04561202.1| translocation protein TolB [Citrobacter sp. 30_2] gi|226906260|gb|EEH92178.1| translocation protein TolB [Citrobacter sp. 30_2] Length = 431 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/421 (23%), Positives = 184/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ S I F + +++GG +V DL+ S FN + + Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGG----IVGADLRNSGKFNPLDRS 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P + Q W++LG +V G+V V ++L D ++ + Sbjct: 76 RLPQQ---PGTAQEVQPAAWSALGIDAVVVGQVTPNPDGSYSVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLSNGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNVNGGAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAKQDLVAGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|213649746|ref|ZP_03379799.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 373 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 168/376 (44%), Gaps = 50/376 (13%) Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S FN + + Q+ + + W++LG ++ G V V + Sbjct: 1 MAADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAY 59 Query: 129 RLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D ++ + + W R HT SD++++ +TG KG F +RI +V ++ Sbjct: 60 QLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-G 118 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L V D DG N +++ Q L P +SP+ K+AY T+ E ++ T Sbjct: 119 GQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLA 175 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N Sbjct: 176 NGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTE 235 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------------- 347 ++ PDS + F SD+ G+ Q+Y M NG +RI SQ+++A Sbjct: 236 PTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQDADVSSDGKFMVMVSSN 295 Query: 348 ---------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 ++ D P +P G ++ ++ G + ++ DG + Sbjct: 296 NGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 355 Query: 384 RLLVEDSNLQAPTWSP 399 RL D +++P WSP Sbjct: 356 RLPATDGQVKSPAWSP 371 >gi|283784493|ref|YP_003364358.1| colicin import protein [Citrobacter rodentium ICC168] gi|282947947|emb|CBG87511.1| colicin import protein [Citrobacter rodentium ICC168] Length = 430 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 101/421 (23%), Positives = 184/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ S I F + +++GG +V DL+ S FN + + Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGG----IVGADLRNSGKFNPLDRS 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P + Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGTAQEVQPAAWSALGIDAVVIGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLSNGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNVNGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVAGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + RL D ++ P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|297568868|ref|YP_003690212.1| WD40 domain protein beta Propeller [Desulfurivibrio alkaliphilus AHT2] gi|296924783|gb|ADH85593.1| WD40 domain protein beta Propeller [Desulfurivibrio alkaliphilus AHT2] Length = 431 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 170/346 (49%), Gaps = 17/346 (4%) Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 +W GA+ ++ G + G + ++E RL D+ + I G+++ + R+ D+ Sbjct: 92 NWQRHGAEFVIQGSYREIGGN-FQLELRLLDINAGRMIHGRRYQAPRELVRRQLLRYIDE 150 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFS 220 + +TG+KG NS+I FVS++ + + D G N+R +T R Q L PRF+ Sbjct: 151 SVEVLTGKKGISNSKIAFVSDATG----HKEIHLADILGDNVRQVT--RHQYLAVSPRFT 204 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + + + Y ++ + +Y + R + + I + + + P ++ + R ++++ +D Sbjct: 205 RDGEHLTYTSHHRGNA-NLYQTNIRELKTTRAISRWVGLNMTPTWAPDDNRMVLTLSRDG 263 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D+Y + RLT+ +N+S S+SPD ++ F SDR G Q+Y+M +R Sbjct: 264 NPDLYLTERTGKIIRRLTHGEGVNVSPSFSPDGRRLAFVSDRSGTPQIYLMDMRTMAIQR 323 Query: 341 IS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWS 398 ++ Q + + P WSP G IA+T I V+ +G R + + ++P+WS Sbjct: 324 LTFQGHDNT--TPSWSPDGKWIAYTSRIDGVLHIAVISPEGGPPRQVTRTWGHHESPSWS 381 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTPAYASDPQW 442 P R L+F+R + +L +I L+G ++ + S PQW Sbjct: 382 PDSRQLVFARLRHDR--EELCAIFLDGSGLRVLFGDQSGNHSMPQW 425 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 3/165 (1%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + +R G IR LT + + P FSP+ +++A+ + D ++YLMD R A +R Sbjct: 267 LYLTERTGKIIRRLTHG-EGVNVSPSFSPDGRRLAFVS-DRSGTPQIYLMDMRT-MAIQR 323 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P +S +GK + + D + I + + ++T T + S S+SPD Sbjct: 324 LTFQGHDNTTPSWSPDGKWIAYTSRIDGVLHIAVISPEGGPPRQVTRTWGHHESPSWSPD 383 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 S Q+VF R +E+L + +GS + + D+ ++ P WSP+ Sbjct: 384 SRQLVFARLRHDREELCAIFLDGSGLRVLFGDQSGNHSMPQWSPR 428 >gi|219870351|ref|YP_002474726.1| translocation protein TolB [Haemophilus parasuis SH0165] gi|219690555|gb|ACL31778.1| dna-J like membrane chaperone, translocation protein TolB/colicin tolerance protein/periplasmic component of the Tol biopolymer transport system [Haemophilus parasuis SH0165] Length = 391 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 178/390 (45%), Gaps = 48/390 (12%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F ++ + V+++++ DL+ S F + + S + ++ + + W ++G Sbjct: 5 IAVIPFKAMGGVPDDVAQIIADDLRNSGKFTPLDRASLPAQPSSAAEV-NPEQWTNIGID 63 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDV----KDRKQIIGKKFFSSPASWRKI-AHTISDDIYQ 164 +V G+V G + ++L D +I + F+ PA+ ++ AHT+SD +++ Sbjct: 64 NVVVGQVSAVGGG-YNIAYQLVDTLGTSGAAGNVIAQGSFNVPAAQMRLGAHTVSDQVFE 122 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +T +G F ++I +V V G+ L V D DG N + S++ L P +SP+ Sbjct: 123 KLTQIRGAFRTKIAYV---VQRGVSSYELRVSDYDGFNAFTIVKSKEP-LMSPEWSPDGS 178 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+AY T++++ +V + D R A K IG+ R AP FS +G R + +D ++I Sbjct: 179 KLAYVTFENKK-SQVVVHDIR-SGARKVIGSLRGHNGAPSFSPDGSRVAFASNQDGVLNI 236 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS--------NGS 336 Y + + +LT+ N S+SPD I+F SDR G Q+Y M S GS Sbjct: 237 YVTGVGGGSPRQLTSNAGNNTEPSWSPDGGYILFTSDRGGLPQVYQMSSSGGGASLIGGS 296 Query: 337 DQKRISQDKE------------------------ASYFD--PVWSPQGDLIAFTKFSGEK 370 +IS D + +++ D P SP G ++ ++ G Sbjct: 297 GSGKISADGKNLIMVSGDRIVRRDLVSGSTEAISSTFLDESPSISPNGTMVIYSSTKGVS 356 Query: 371 FAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + ++ DG + L + P WSP Sbjct: 357 KVLQLVSADGRFKANLPGAGGQYKFPAWSP 386 >gi|227114917|ref|ZP_03828573.1| translocation protein TolB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 430 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 99/418 (23%), Positives = 190/418 (45%), Gaps = 17/418 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K+ L L+ + +HA V++ + P+ + K+ V +V Sbjct: 5 LKVALSFLM-----LWTAVVHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + W +LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPIDANRMPQQPATASEVTP-AAWTALGIDAVVVGQVQPSADGSYLVSYQL 118 Query: 131 WDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + ++ + F W R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 119 VDTSGNPGNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +S + K+AY T+ E ++ T + Sbjct: 178 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTF--ESGRSALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N + Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + +NG +R++ + + V S G + +G Sbjct: 295 WFPDSQTLAYTSDQAGRPQVYKVNANGGAPQRLTWEGSQNQDSDV-SADGKFLVTVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + ++L + + P+ +P+G +I+S K+ GS L + +GR Sbjct: 354 GAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLVSTDGR 409 >gi|146310896|ref|YP_001175970.1| translocation protein TolB [Enterobacter sp. 638] gi|166988076|sp|A4W889|TOLB_ENT38 RecName: Full=Protein tolB; Flags: Precursor gi|145317772|gb|ABP59919.1| TolB, N-terminal domain protein [Enterobacter sp. 638] Length = 430 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 102/446 (22%), Positives = 194/446 (43%), Gaps = 71/446 (15%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF------VSIDE 60 + + L + ++ +L + +HA V++ S I F + ++ Sbjct: 1 MKQALRVAVSFFMLWAAV-------LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPED 53 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIK 118 +GG +V+ DL+ S FN + + Q+ P + Q W++LG +V G+V Sbjct: 54 IGG----IVAADLRNSGKFNPLDRSRLPQQ---PGTAQEVQPAAWSALGIDAVVVGQVTP 106 Query: 119 EGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSR 176 V ++L D ++ + + W R HT SD++++ +TG KG F +R Sbjct: 107 SPDGDYNVTYQLVDTGGAPGTVLAQNTYKVNKKWLRYAGHTASDEVFEKLTGIKGAFRTR 166 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V ++ G L V D DG N ++ Q L P ++P+ K+AY T+ E Sbjct: 167 IAYVVQTN-GGQFPYELRVSDYDGYN-QFTVHRSPQPLMSPAWTPDGSKLAYVTF--ESG 222 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 ++ T + A +++ +F AP FS +G + ++ K ++++Y +D+ S + Sbjct: 223 RSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQ 282 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA----- 347 +T+ N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 283 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNVNGGTPQRITWEGSQNQDADVSSD 342 Query: 348 -------------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIG 374 ++ D P +P G ++ ++ G + Sbjct: 343 GKTMVMVSSAGGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLN 402 Query: 375 VMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ DG + RL D +++P WSP Sbjct: 403 LVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|261341330|ref|ZP_05969188.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cancerogenus ATCC 35316] gi|288316635|gb|EFC55573.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cancerogenus ATCC 35316] Length = 431 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/421 (23%), Positives = 185/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ S I F + +++GG +V+ DL+ S FN + + Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRS 75 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P + Q W++LG +V G+V V ++L D ++ + Sbjct: 76 RLPQQ---PGTAQEVQPAAWSALGIDAVVVGQVTPAPDGGYNVAYQLVDTGGAPGTVLAQ 132 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 133 NTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 191 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N ++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 192 N-QFTVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLSNGAVRQVASFPRHNG 248 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + F SD Sbjct: 249 APAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQITDGRSNNTEPTWFPDSQNLAFTSD 308 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 309 QAGRPQVYKVNINGGAAQRITWEGSQNQDADISADGKTMVMVSTAGGQQHIAKQDLVTGG 368 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + R+ D +++P WS Sbjct: 369 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARIPATDGQVKSPAWS 428 Query: 399 P 399 P Sbjct: 429 P 429 >gi|165918421|ref|ZP_02218507.1| TolB protein [Coxiella burnetii RSA 334] gi|165917927|gb|EDR36531.1| TolB protein [Coxiella burnetii RSA 334] Length = 437 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 8/361 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DLQ S F + + Q + + I + W LV G + G R Sbjct: 57 IPQVIKNDLQNSGQFRVTGSGNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRY 115 Query: 125 RVEFRLWDVKD-RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--S 181 RV F L +V D +++ + F R AH ISD IYQ +TG +G F+++I +V Sbjct: 116 RVAFTLINVFDSNNRLLSESFNVDAKELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQ 175 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S + K +L V D DG N + L S D + P +SP+ K+AY +++ +YL Sbjct: 176 ASSENTAAKYTLEVADADGFNPQPLLVS-DMPIMSPTWSPDGNKIAYVSFEGHRA-AIYL 233 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D R +R+ + AP FS +GK+ + + K IY ++L +T Sbjct: 234 QDLATGRR-QRLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGHLREITKGW 292 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ ++SPD ++F S+R+G Q+Y R++ + + P + P G I Sbjct: 293 SIDTEPAWSPDGKSLLFTSNRDGTPQIYNYSFADGSINRVTYRGDYNA-RPSFMPDGKSI 351 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F I Q ++L E ++P+ +P+G+ I++ + G SI Sbjct: 352 IMMHRENGLFGIARQDLSTGQVQILSESGTDESPSLAPNGKMAIYAMEYGGRGVLAQVSI 411 Query: 422 D 422 D Sbjct: 412 D 412 >gi|91792752|ref|YP_562403.1| TolB-like protein [Shewanella denitrificans OS217] gi|123356924|sp|Q12PE6|TOLB_SHEDO RecName: Full=Protein tolB; Flags: Precursor gi|91714754|gb|ABE54680.1| TolB-like protein [Shewanella denitrificans OS217] Length = 442 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 183/384 (47%), Gaps = 36/384 (9%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGK 121 ++S++V DL RS F + + Q S+ +F W +GA+ +V G + G Sbjct: 53 QISDIVMGDLSRSGTFKPLDIRALPQH--GISSVAQFAAASWGKVGAEAVVMGSIKPYGV 110 Query: 122 DRLRVEFRLWD-VKDRKQII------------GKKFFSSPASWRKIAHTISDDIYQSITG 168 D+ V F L D V+ + Q + ++ S +R+ H ISD +Y+ +TG Sbjct: 111 DQFLVNFELIDLVRAQSQALKGPQNNTELVLESRQTVISANQFRQYGHRISDIVYEKLTG 170 Query: 169 EKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 +G F +R +V ++K L + D DG N + L S + L P +SP+ Sbjct: 171 IRGAFLTRTAYV-------VVKQGQKAPYHLMIADYDGYNEQMLLRSPEP-LMSPTWSPD 222 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +++AY ++++ +++ D + + ++ + AP FS +GK+ +++ KD Sbjct: 223 GRRLAYVSFENRKA-EIFVQDI-YSQTRTLVSSYPGINGAPSFSPDGKKLAVTLSKDGQP 280 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++Y +D+ + A +R+T+ I+ S+ PD ++F S+R GK Q+Y + + R++ Sbjct: 281 EVYVIDIATKAAKRITDHYSIDTEPSWYPDGKSLLFTSERGGKPQIYSVHLDTGKVSRVT 340 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 + E + + +P G + F + KF I M ++L ++P+ +P+G Sbjct: 341 FEGEWNLGGSI-TPDGRSMIFVNRTNGKFHIARMDLATRFLQVLSSTQLDESPSVAPNGT 399 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR 426 +I+ G L ++ ++GR Sbjct: 400 MVIYGTTHQGK--QVLAAVSMDGR 421 >gi|238897410|ref|YP_002923087.1| tol protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259533857|sp|C4K8V2|TOLB_HAMD5 RecName: Full=Protein tolB; Flags: Precursor gi|229465165|gb|ACQ66939.1| tol protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 429 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 105/428 (24%), Positives = 201/428 (46%), Gaps = 35/428 (8%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 LL +LI + + +HA V++ + P+++ K++ E K+++++S DL+ Sbjct: 7 MLLSLLI--LWTSLLHAQVRIQITQGVDSARPIAVVPFKWLGTVEPPEKIADIISSDLRN 64 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S FN I +K + W LG +V G++ + + ++L ++ Sbjct: 65 SGKFNPIDPSRMPEKPFTASELIT-SSWYGLGVDAVVVGQIQAGADNHYLISYQLVELSS 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ + R AH+ SD+I+Q +TG KG F++RI +V + + L + Sbjct: 124 GTVLTQNQYKVTQQWLRYAAHSASDEIFQKLTGIKGAFSTRIAYVVQKNTRQL-PYELKI 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ Q L P +SP+ QK+AY + E ++ + ++I N Sbjct: 183 SDYDGYN-PFVVYRSSQPLMSPAWSPDGQKLAYVNF--ESGRSALVIQNLASGSIQKIAN 239 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F+ AP FS +G + ++ K +++IY +DL S ++T++ N S+ PDS Sbjct: 240 FQGHNGAPAFSPDGAKLAFALSKTGSLNIYMMDLASGNITQITDSRSNNTEPSWFPDSRY 299 Query: 316 IVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + + SD+ G+ Q+Y + +G +RI+ + + + V SP G F I Sbjct: 300 LAYTSDQAGRPQVYKIDISGHGVPQRITWNAKQNQNSAV-SPDG-----------TFLIL 347 Query: 375 VMKKDGSQE-----------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 V KDG Q ++L + + P+ +P+ +I+S ++ ++ +L S D Sbjct: 348 VNSKDGQQHIAKQDLKTGDVQILTDTLLDETPSIAPNTTMVIYSSTQNANSVLQLVSTD- 406 Query: 424 NGRNETLI 431 GR + L+ Sbjct: 407 -GRFKALL 413 >gi|119356690|ref|YP_911334.1| WD40 domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354039|gb|ABL64910.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides DSM 266] Length = 442 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 170/348 (48%), Gaps = 20/348 (5%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS 159 F S+G+++ GR+ KE + ++ +++ K I+ K + S RK + S Sbjct: 106 FSVLGSVGSEIYAGGRLTKE-SGSVTLDMEVYETLGGKLIMKKSYVGSEGDLRKQGNVFS 164 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D+ + +TG+K F S+I+FVS +G + C D +G NI LT ++ I P + Sbjct: 165 ADLIELLTGKKSLFGSKIVFVSNK--TGFKEIYQC--DFNGQNIEQLTSTK-SISLTPGY 219 Query: 220 SPNQQKVAYATYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + +A+ Y L + + R D ++ G + + P + NG+ ++ Sbjct: 220 SPDGRYLAFTDYTTGRPALHIRSLSDRKDTVLEKNG----VSIDPGWR-NGRELATTLSY 274 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + ++Y + + RLT + I++S ++SPD S++ F S R G Q+++M + Sbjct: 275 EGDQELYLCKVDGTVSRRLTTSKGIDLSPTFSPDGSRMAFVSSRNGLPQIFIMDVSSGLT 334 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNL-QAP 395 +R++ + P WSP GD IA++ + SGE I + DG+ + L S +AP Sbjct: 335 RRLTYSGRYNT-QPSWSPGGDKIAYSTWEKSGE-INIFTINADGTGLKKLTSGSRENEAP 392 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 +WSP G ++F+ + G+ KL+ + G N+ L+ P W Sbjct: 393 SWSPDGSMIVFASNRQGN--KKLFVMGSGGENQKRLLQMDGEQMQPSW 438 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 11/166 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD--TRIDRAP 250 LC +D G R LT S+ I P FSP+ ++A+ + + + ++++MD + + R Sbjct: 282 LCKVD--GTVSRRLTTSKG-IDLSPTFSPDGSRMAFVSSRN-GLPQIFIMDVSSGLTRRL 337 Query: 251 KRIGNFRSMILAPRFSSNG-KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 G + + P +S G K A + +K ++I++++ ++LT+ N + S+ Sbjct: 338 TYSGRYNTQ---PSWSPGGDKIAYSTWEKSGEINIFTINADGTGLKKLTSGSRENEAPSW 394 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 SPD S IVF S+R+G ++L+VM S G +QKR+ Q + P WS Sbjct: 395 SPDGSMIVFASNRQGNKKLFVMGSGGENQKRLLQ-MDGEQMQPSWS 439 >gi|240948555|ref|ZP_04752928.1| translocation protein TolB precursor [Actinobacillus minor NM305] gi|240297063|gb|EER47634.1| translocation protein TolB precursor [Actinobacillus minor NM305] Length = 426 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 180/387 (46%), Gaps = 23/387 (5%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+++VS DL+ S F + + + + + Q W +G ++V G+V G Sbjct: 55 VAQIVSDDLRNSGKFAPVERSKLPAQPGSAGEVVS-QQWTDIGVDMVVVGQVTPAGGGYY 113 Query: 125 RVEFRLWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L DV + ++ + F PA+ R+ AHT+SD +++ IT +G F ++I +V Sbjct: 114 NVAYQLVDVLSNPAAVLTEGAFKVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYV-- 171 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V G+ L V D DG N + S++ L P +SP K+AY T++++ +V + Sbjct: 172 -VQRGVSSYELRVSDYDGFNAFTVVQSKEP-LMSPEWSPEGSKLAYVTFENKK-PQVVVH 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D R A + + + AP FS +G + + +D ++IY V +LT Sbjct: 229 DLR-SGARRVVAALKGHNGAPAFSPDGSKIAFASNQDGELNIYVVGANGGTPSKLTANAG 287 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+SPD I F SDR G Q+Y M S+G + K ++ S G + Sbjct: 288 NNTEPSWSPDGGSIYFTSDRSGSPQVYRMSSSGGGVSAVGGGKT---YNAKMSSDGK--S 342 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +G+K V+K+D + V S ++P+ SP+G +I+S K TG L Sbjct: 343 LIMIAGDK----VVKQDLAAGSTEVLSSTFLDESPSISPNGIMVIYSSTK--GTGKVLQL 396 Query: 421 IDLNGR-NETLINTPAYASDPQWVGFM 446 + +GR L T P W ++ Sbjct: 397 VSADGRFKANLPGTGGQYKFPAWSPYL 423 >gi|195939092|ref|ZP_03084474.1| translocation protein TolB [Escherichia coli O157:H7 str. EC4024] Length = 389 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 160/330 (48%), Gaps = 25/330 (7%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ +S S I F + +++GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGG----IVAADLRNSGKFNPLDRA 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + W R HT SD++++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N +++ Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD Sbjct: 248 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA 347 + G+ Q+Y + NG +RI SQ+++A Sbjct: 308 QAGRPQVYKVNINGGAPQRITWEGSQNQDA 337 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +S ++SPD S++ + + G+ L + +NG+ ++ S + P +SP G +AF Sbjct: 203 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA--PAFSPDGSKLAF 260 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + VM Q R + + SN PTW P ++L F+ + G ++Y ++ Sbjct: 261 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR--PQVYKVN 318 Query: 423 LNG 425 +NG Sbjct: 319 ING 321 >gi|10120890|pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein Length = 403 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 169/382 (44%), Gaps = 54/382 (14%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKD 122 + +V+ DL+ S FN + + Q+ P S Q W++LG +V G+V Sbjct: 27 IGGIVAADLRNSGKFNPLDRARLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDG 83 Query: 123 RLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L D ++ + + W R HT SD++++ +TG KG F +RI +V Sbjct: 84 SYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 143 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 144 VQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLXSPAWSPDGSKLAYVTF--ESGRSAL 199 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ T + A +++ +F AP FS +G + ++ K ++++Y DL S ++T+ Sbjct: 200 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVXDLASGQIRQVTDG 259 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--------- 347 N ++ PDS + F SD+ G+ Q+Y + NG +RI SQ+++A Sbjct: 260 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFX 319 Query: 348 ---------------------------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ D P +P G + ++ G + ++ Sbjct: 320 VXVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTXVIYSSSQGXGSVLNLVST 379 Query: 379 DGS-QERLLVEDSNLQAPTWSP 399 DG + RL D ++ P WSP Sbjct: 380 DGRFKARLPATDGQVKFPAWSP 401 >gi|300715889|ref|YP_003740692.1| protein TolB (translocation of group A colicins) [Erwinia billingiae Eb661] gi|299061725|emb|CAX58841.1| Protein TolB (Translocation of group A colicins) [Erwinia billingiae Eb661] Length = 430 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 103/440 (23%), Positives = 191/440 (43%), Gaps = 59/440 (13%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYS-PVSIAFTKFVSIDELGGK 64 + + + ++ LL V + HA V++ T N + P+ + K+ Sbjct: 1 MKQAFRVAMSFLLLFVAVA-------HAEVRIEITQGVNTARPIGVVPFKWAGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN + + Q+ T + + W +LG +V G+V Sbjct: 54 IGGIVAADLRNSGKFNPLDRSRLPQQPTTAAEV-QPAAWTALGIDAVVVGQVQPGADGSY 112 Query: 125 RVEFRLWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + I+ + + W R AHT SD+ ++ +TG KG F +RI +V + Sbjct: 113 LVSYQLVDTSGNPGAILAQNQYKVTKQWLRYAAHTASDEAFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N + S Q L P +S + K+AY T+ E ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYNQNTVHRS-PQPLMSPAWSKDGSKLAYVTF--ESGKSALVV 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A K++ +F AP FS +G + ++ K ++++Y +DL S +LT+ + Sbjct: 229 QTLANGAIKQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQINQLTDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEAS-------- 348 + ++ PDS + + SD+ G+ Q+Y + ++G +R++ QD + S Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKISASGGTAQRLTWEGGQNQDADVSSDGKSLVM 348 Query: 349 --------------------------YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + D P +P G ++ ++ G + ++ DG Sbjct: 349 ISTNGGAQHVARQDLETGAVQQLTDTFLDETPSLAPNGTMVIYSSTQGMGSVLQLVSTDG 408 Query: 381 S-QERLLVEDSNLQAPTWSP 399 + RL D ++ P WSP Sbjct: 409 RFKARLPATDGQVKFPAWSP 428 >gi|251793058|ref|YP_003007784.1| translocation protein TolB [Aggregatibacter aphrophilus NJ8700] gi|247534451|gb|ACS97697.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter aphrophilus NJ8700] Length = 426 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 99/391 (25%), Positives = 178/391 (45%), Gaps = 44/391 (11%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ +++++S DL+ S FN + Q+ T+ + + W++ Sbjct: 38 PIAVVPFKWNGPGSAPADIAKIISDDLRNSGKFNPMEVSKMPQQPTSAAEV-NPEVWSAQ 96 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 G + ++ G+V + ++L D + I+ + ++ W R AHT+SD+ ++ Sbjct: 97 GIEAVIVGQVTPS-NGGFDIAYQLVDTMGSAGSILSQNQYTVTQKWLRYGAHTVSDESFE 155 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG KG F +RI +V + G + V D DG N +++ Q P +SP+ + Sbjct: 156 KLTGIKGAFRTRIAYVVQKN-GGSQPYEVRVSDYDGFN-QFIVNRSSQPFMSPAWSPDGK 213 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+AY +++++ ++ L D A K + +F AP FS +G R + KD ++I Sbjct: 214 KLAYVSFENKK-AQIILQDLG-SMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNI 271 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK----- 339 Y ++L S +LT+ N S+SPD IVF SDR G Q+Y M ++G Sbjct: 272 YVINLGSGQVSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQVYRMSASGGGASLVGGR 331 Query: 340 ---RISQDK-------------------------EASYFD--PVWSPQGDLIAFTKFSGE 369 +IS D +++ D P SP G +I ++ G Sbjct: 332 GSGQISSDGSTLVMIDGSNNIVKKDLASGSAEVLSSTFLDESPSISPNGIMIIYSSTQGL 391 Query: 370 KFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + ++ DG + RL D ++ P WSP Sbjct: 392 GKVLQLVSADGRFKARLPGNDGQVKFPAWSP 422 >gi|254229963|ref|ZP_04923365.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio sp. Ex25] gi|151937532|gb|EDN56388.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio sp. Ex25] Length = 450 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 107/430 (24%), Positives = 190/430 (44%), Gaps = 46/430 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ L +S V++ DLQRS F+ + Q + + F W +L Sbjct: 37 PIAVVPFKWEGTQALPTDISAVIASDLQRSGKFSPVPTSKMPQTPFSESEV-NFDAWTNL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK-----------------FFSSPA 149 G L+TG + + + + ++L D+ R Q+ G K F+ A Sbjct: 96 GVDALLTGSIKQNAQGDYVINYQLVDIV-RGQLTGGKSKALGSDGELVLSKDHVLFNKVA 154 Query: 150 S-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN 202 + R+ AH ISD +Y+ +TG++G F +RI +V VV+ L V D DG N Sbjct: 155 TVQGPRMREYAHRISDLVYEQLTGDRGAFMTRIAYV---VVNDKDRFPYQLRVADYDGYN 211 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMD-TRIDRAPKRIGNFR 257 R + S+ Q L P +SP+ +K+AY ++ + I+ +Y + +I P+ G Sbjct: 212 ERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGEREKITSYPRHNG--- 267 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 APRFS +G + I + K ++ +Y+ DL + ++T N + PD ++ Sbjct: 268 ----APRFSPDGNKLAIVLSKTGSLHVYTFDLNTRKLTQITRGRSNNTEPFWHPDGKSLI 323 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR GK Q+Y + R++ + + +P G + S F + Sbjct: 324 FTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQI-TPDGRFLVMVNRSNAGFNLAKQD 382 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + ++L + ++P+ +P+G +++S + + SID GR L T Sbjct: 383 LETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKNVLSMVSID--GRFKARLPATNGR 440 Query: 437 ASDPQWVGFM 446 P W F+ Sbjct: 441 VRAPAWSPFL 450 >gi|253687643|ref|YP_003016833.1| Tol-Pal system beta propeller repeat protein TolB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259533860|sp|C6DCE7|TOLB_PECCP RecName: Full=Protein tolB; Flags: Precursor gi|251754221|gb|ACT12297.1| Tol-Pal system beta propeller repeat protein TolB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 430 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/418 (23%), Positives = 190/418 (45%), Gaps = 17/418 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K+ + L+ + +HA V++ + P+ + K+ V +V Sbjct: 5 LKVAVSFLM-----LWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + W +LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPIDANRMPQQPATASEVTP-AAWTALGIDAVVVGQVQPSADGSYLVSYQL 118 Query: 131 WDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + ++ + F W R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 119 VDTSGNPGNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +S + K+AY T+ E ++ T + Sbjct: 178 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTF--ESGRSALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N + Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLASGQISQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + +NG +R++ + A D S G + +G Sbjct: 295 WFPDSQTLAYTSDQAGRPQVYKVNANGGAPQRLTWEG-AQNQDADVSADGKFLVTVGSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + ++L + + P+ +P+G +I+S K+ GS L + +GR Sbjct: 354 GAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLVSTDGR 409 >gi|262394684|ref|YP_003286538.1| TolB protein [Vibrio sp. Ex25] gi|262338278|gb|ACY52073.1| TolB protein precursor [Vibrio sp. Ex25] Length = 442 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 107/430 (24%), Positives = 190/430 (44%), Gaps = 46/430 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ L +S V++ DLQRS F+ + Q + + F W +L Sbjct: 29 PIAVVPFKWEGTQALPTDISAVIASDLQRSGKFSPVPTSKMPQTPFSESEV-NFDAWTNL 87 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK-----------------FFSSPA 149 G L+TG + + + + ++L D+ R Q+ G K F+ A Sbjct: 88 GVDALLTGSIKQNAQGDYVINYQLVDIV-RGQLTGGKSKALGSDGELVLSKDHVLFNKVA 146 Query: 150 S-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN 202 + R+ AH ISD +Y+ +TG++G F +RI +V VV+ L V D DG N Sbjct: 147 TVQGPRMREYAHRISDLVYEQLTGDRGAFMTRIAYV---VVNDKDRFPYQLRVADYDGYN 203 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMD-TRIDRAPKRIGNFR 257 R + S+ Q L P +SP+ +K+AY ++ + I+ +Y + +I P+ G Sbjct: 204 ERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGEREKITSYPRHNG--- 259 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 APRFS +G + I + K ++ +Y+ DL + ++T N + PD ++ Sbjct: 260 ----APRFSPDGNKLAIVLSKTGSLHVYTFDLNTRKLTQITRGRSNNTEPFWHPDGKSLI 315 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR GK Q+Y + R++ + + +P G + S F + Sbjct: 316 FTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQI-TPDGRFLVMVNRSNAGFNLAKQD 374 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + ++L + ++P+ +P+G +++S + + SID GR L T Sbjct: 375 LETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKNVLSMVSID--GRFKARLPATNGR 432 Query: 437 ASDPQWVGFM 446 P W F+ Sbjct: 433 VRAPAWSPFL 442 >gi|269967692|ref|ZP_06181742.1| translocation protein TolB precursor [Vibrio alginolyticus 40B] gi|269827779|gb|EEZ82063.1| translocation protein TolB precursor [Vibrio alginolyticus 40B] Length = 450 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 108/430 (25%), Positives = 190/430 (44%), Gaps = 46/430 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ L VS V++ DLQRS F+ + Q + + F W +L Sbjct: 37 PIAVVPFKWEGTQALPTDVSAVIASDLQRSGKFSPVPTSKMPQTPFSESEV-NFDAWTNL 95 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK-----------------FFSSPA 149 G L+TG + + + + ++L D+ R Q+ G K F+ A Sbjct: 96 GVDALLTGSIKQNDQGDYVINYQLVDIV-RGQLTGGKSKALGSDGELVLSKDHVLFNKVA 154 Query: 150 S-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN 202 + R+ AH ISD +Y+ +TG++G F +RI +V VV+ L V D DG N Sbjct: 155 TVQGPRMREYAHRISDLVYEQLTGDRGAFMTRIAYV---VVNDKDRFPYQLRVADYDGYN 211 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMD-TRIDRAPKRIGNFR 257 R + S+ Q L P +SP+ +K+AY ++ + I+ +Y + +I P+ G Sbjct: 212 ERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGEREKITSYPRHNG--- 267 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 APRFS +G + I + K ++ +Y+ DL + ++T N + PD ++ Sbjct: 268 ----APRFSPDGNKLAIVLSKTGSLHVYTFDLNTRKLTQITRGRSNNTEPFWHPDGKSLI 323 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR GK Q+Y + R++ + + +P G + S F + Sbjct: 324 FTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQI-TPDGRFLVMVNRSNAGFNLAKQD 382 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + ++L + ++P+ +P+G +++S + + SID GR L T Sbjct: 383 LETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKNVLSMVSID--GRFKARLPATNGR 440 Query: 437 ASDPQWVGFM 446 P W F+ Sbjct: 441 VRAPAWSPFL 450 >gi|227327556|ref|ZP_03831580.1| translocation protein TolB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 430 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/418 (23%), Positives = 190/418 (45%), Gaps = 17/418 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K+ L L++ + HA V++ + P+ + K+ V +V Sbjct: 5 LKVALSFLML-----WTAVAHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + W +LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPIDANRMPQQPATASEVTP-AAWTALGIDAVVVGQVQPSADGSYLVSYQL 118 Query: 131 WDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + ++ + F W R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 119 VDTSGNPGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +S + K+AY T+ E ++ T + Sbjct: 178 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTF--ESGRSALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N + Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + +NG +R++ + + V S G + +G Sbjct: 295 WFPDSQTLAYTSDQAGRPQVYKVNANGGAPQRLTWEGSQNQDSDV-SADGKFLVTVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + ++L + + P+ +P+G +I+S K+ GS L + +GR Sbjct: 354 GAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLVSTDGR 409 >gi|91227604|ref|ZP_01261908.1| translocation protein TolB precursor [Vibrio alginolyticus 12G01] gi|91188497|gb|EAS74790.1| translocation protein TolB precursor [Vibrio alginolyticus 12G01] Length = 442 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 108/430 (25%), Positives = 190/430 (44%), Gaps = 46/430 (10%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 P+++ K+ L VS V++ DLQRS F+ + Q + + F W +L Sbjct: 29 PIAVVPFKWEGTQALPTDVSAVIASDLQRSGKFSPVPTSKMPQTPFSESEV-NFDAWTNL 87 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK-----------------FFSSPA 149 G L+TG + + + + ++L D+ R Q+ G K F+ A Sbjct: 88 GVDALLTGSIKQNDQGDYVINYQLVDIV-RGQLTGGKSKALGSDGELVLSKDHVLFNKVA 146 Query: 150 S-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN 202 + R+ AH ISD +Y+ +TG++G F +RI +V VV+ L V D DG N Sbjct: 147 TVQGPRMREYAHRISDLVYEQLTGDRGAFMTRIAYV---VVNDKDRFPYQLRVADYDGYN 203 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMD-TRIDRAPKRIGNFR 257 R + S+ Q L P +SP+ +K+AY ++ + I+ +Y + +I P+ G Sbjct: 204 ERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQAEIFIMNIYTGEREKITSYPRHNG--- 259 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 APRFS +G + I + K ++ +Y+ DL + ++T N + PD ++ Sbjct: 260 ----APRFSPDGNKLAIVLSKTGSLHVYTFDLNTRKLTQITRGRSNNTEPFWHPDGKSLI 315 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR GK Q+Y + R++ + + +P G + S F + Sbjct: 316 FTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQI-TPDGRFLVMVNRSNAGFNLAKQD 374 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + ++L + ++P+ +P+G +++S + + SID GR L T Sbjct: 375 LETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKNVLSMVSID--GRFKARLPATNGR 432 Query: 437 ASDPQWVGFM 446 P W F+ Sbjct: 433 VRAPAWSPFL 442 >gi|332534221|ref|ZP_08410066.1| TolB protein precursor [Pseudoalteromonas haloplanktis ANT/505] gi|332036301|gb|EGI72772.1| TolB protein precursor [Pseudoalteromonas haloplanktis ANT/505] Length = 389 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/372 (26%), Positives = 169/372 (45%), Gaps = 83/372 (22%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG------------------ 141 + W + G + ++ G V ++ R V + L DV R QI G Sbjct: 26 YASWVNKGVEAVLVGEVEQQTDGRYLVRYELVDVI-RGQITGGNTQMMSNGKLVKSQDHI 84 Query: 142 ---KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS------ 192 ++ + +R+ +H ISD IY+ +TGEKG F ++I +V I++++ Sbjct: 85 LEARESVIGESGFRRYSHRISDVIYEKLTGEKGAFLTKIAYV-------IVRDNEPKPYQ 137 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG N + L S++ L P +SPN K+AY T+++ ++Y+ D + + Sbjct: 138 LVVADYDGFNEQVLLRSKEP-LMSPAWSPNGTKLAYVTFENRQS-QIYIQDIYTGKR-EI 194 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDE--AMDIYSVDLQSNATERLTNTLFINISASYS 310 I ++R + AP+FS +GK+ L+ + KD+ A ++Y +DL + RLTN I+ S+ Sbjct: 195 IASYRGINGAPQFSPDGKKLLLVLSKDKTGATEVYMLDLATRKETRLTNHRSIDTEPSWY 254 Query: 311 PDSSQIVFESDREGKEQLY-------------------------------VMQSNGSDQK 339 P+ IVF S+R G Q+Y VM + + Q Sbjct: 255 PNGQDIVFTSERGGNAQIYKLNLKTGRSQRLTFDGDMNLAGSITPDGKELVMVNRTNGQY 314 Query: 340 RISQDKEASYF-----------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLV 387 +++ + A+ P +P G +I ++ K + ++ DG + RL V Sbjct: 315 HLAKKELATGAFQVLTRTRLDESPSIAPNGSMIIYSTLHNNKQVLALVSMDGRFKARLPV 374 Query: 388 EDSNLQAPTWSP 399 D ++AP WSP Sbjct: 375 LDGQVKAPAWSP 386 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 QL V +G +++ + + KE P WSP G +A+ F + I + + ++ Sbjct: 137 QLVVADYDGFNEQVLLRSKEP-LMSPAWSPNGTKLAYVTFENRQSQIYIQDIYTGKREII 195 Query: 387 VEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 + AP +SP G+ L+ KD +++Y +DL R ET L N + ++P W Sbjct: 196 ASYRGINGAPQFSPDGKKLLLVLSKDKTGATEVYMLDLATRKETRLTNHRSIDTEPSW 253 >gi|189500640|ref|YP_001960110.1| WD40 domain-containing protein beta Propeller [Chlorobium phaeobacteroides BS1] gi|189496081|gb|ACE04629.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides BS1] Length = 444 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 119/458 (25%), Positives = 200/458 (43%), Gaps = 58/458 (12%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-----ELGGKVSEVV 69 I LC ++ F + ++K+ A+ P+ + + V ++ + + V+ Sbjct: 17 ILLCCFALMPSSLFGEPVKEYIKITKAGADRIPLVL---RSVDVERSKDAQYANGIDRVI 73 Query: 70 SKDLQRSDVF-------NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 L+ S +F NLIS + Q T I F +S+GA+V G V+K + Sbjct: 74 KNGLEFSGLFAILNSPMNLISGGNIYQ--TGKRQI-NFPALSSVGAEVYAGG-VLKRKGN 129 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L ++ ++D K ++ K + R + H DD+ + TG+ F S+I +VS Sbjct: 130 TLHMDMEVYDALTGKLLMRKLYEGKREDTRSLGHRFCDDLVRLFTGKPSIFGSKIAYVSR 189 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY----------- 231 +G K + + D DG +T + + P S + ++AY TY Sbjct: 190 R--NG--KKEIYLADFDGYGEVPVTRT-GGLALTPALSSDGSQLAYLTYTRGRPDLQIKD 244 Query: 232 -DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + ++ V +ID A ++ S LA FS +G + +IY V Sbjct: 245 LSKKTVVSVTRKGVKIDPAWRK----GSTELATTFSFDGNQ-----------EIYLVRKN 289 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + RLT I++S S+SPD + F S R G Q+++M N KR++ + + Sbjct: 290 GSIVRRLTRDRGIDLSPSFSPDGRYMAFVSSRHGLPQVFIMDLNSGSTKRLTFKGKYNT- 348 Query: 351 DPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 P WSP D IAFT +GE I + DG+ ++L +AP+WSP G ++FS Sbjct: 349 QPAWSPVNDKIAFTTMQKNGE-IDIFTVNADGTGLKQLTYRARQNEAPSWSPDGTMIVFS 407 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + G SKLY ++ +GRN+ + P W F Sbjct: 408 SSRGG--ASKLYVMNADGRNQRSLKLAGEQMQPCWSSF 443 >gi|50120312|ref|YP_049479.1| translocation protein TolB [Pectobacterium atrosepticum SCRI1043] gi|67461950|sp|Q6D7F2|TOLB_ERWCT RecName: Full=Protein tolB; Flags: Precursor gi|49610838|emb|CAG74283.1| TolB protein [Pectobacterium atrosepticum SCRI1043] Length = 430 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/418 (23%), Positives = 189/418 (45%), Gaps = 17/418 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K+ + L+ + +HA V++ + P+ + K+ V +V Sbjct: 5 LKVAVSFLM-----LWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGAIVG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + W +LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPIDANRMPQQPATASEVTP-AAWTALGIDAVVVGQVQPSADGSYLVSYQL 118 Query: 131 WDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + ++ + F W R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 119 VDTSGNPGNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +S + K+AY T+ E ++ T + Sbjct: 178 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTF--ESGRSALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y ++L S +T+ N + Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISPVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + +NG +R++ + + V S G + +G Sbjct: 295 WFPDSQTLAYTSDQAGRPQVYKVNANGGAPQRVTWEGSQNQDSDV-SADGKFLVTVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + ++L + + P+ +P+G +I+S K+ GS L + +GR Sbjct: 354 GAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLVSTDGR 409 >gi|238756016|ref|ZP_04617340.1| hypothetical protein yruck0001_31470 [Yersinia ruckeri ATCC 29473] gi|238705741|gb|EEP98134.1| hypothetical protein yruck0001_31470 [Yersinia ruckeri ATCC 29473] Length = 413 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 185/403 (45%), Gaps = 20/403 (4%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V+ DL+ S FN I Q Sbjct: 2 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGSIVAADLRNSGKFNPIDVARMPQ 61 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D I+ + + Sbjct: 62 QPSTAAEV-TPAAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTAGAAGSILAQNQYKIT 120 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 121 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 178 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +S + K+AY T+ E ++ T + A K++ +F AP FS Sbjct: 179 HRSPEPLMSPAWSADGSKIAYVTF--ESGKSALVIQTLANGAIKQVASFPRHNGAPAFSP 236 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y ++L S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 237 DGTKLAFALSKSGSLNLYVMNLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 296 Query: 328 LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +Y + NG +RI SQ++ A S G +A S I + Sbjct: 297 VYKVNINGGAPQRITWEGSQNQNADV-----SADGKFLALVSSSSGSQHIAKQDLETGAV 351 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++L + + P+ +P+G +I+S + GS L + +GR Sbjct: 352 QVLTDTFLDETPSIAPNGTMVIYSSTQ--GLGSVLQLVSTDGR 392 >gi|212219431|ref|YP_002306218.1| TolB [Coxiella burnetii CbuK_Q154] gi|212013693|gb|ACJ21073.1| TolB [Coxiella burnetii CbuK_Q154] Length = 440 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 162/361 (44%), Gaps = 8/361 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DLQ S F + + Q + + I + W LV G + G R Sbjct: 60 IPQVIKNDLQNSGQFRVTGSGNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRY 118 Query: 125 RVEFRLWDVKD-RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--S 181 RV F L +V D +++ + F + R AH ISD IYQ +TG +G F+++I +V Sbjct: 119 RVAFTLINVFDSNNRLLSESFNVNAKELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQ 178 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S + K +L V D DG N + L S D + P +SP+ K+AY +++ +YL Sbjct: 179 ASSENTAAKYTLEVADADGFNPQPLLVS-DMPIMSPTWSPDGNKIAYVSFEGHRA-AIYL 236 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D R +R+ + AP FS + K+ + + K IY ++L +T Sbjct: 237 QDLATGRR-QRLSEAPGINGAPAFSPDSKQLALVLTKTGNPKIYILNLADGHLREITKGW 295 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ ++SPD ++F S+R+G Q+Y R++ + + P + P G I Sbjct: 296 SIDTEPAWSPDGKSLLFTSNRDGTPQIYNYSFADGSINRVTYRGDYNA-RPSFMPDGKSI 354 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F I Q ++L E ++P+ +P+G+ I++ + G SI Sbjct: 355 IMMHRENGLFGIARQDLSTGQVQILSESGTDESPSLAPNGKMAIYAMEYGGRGVLAQVSI 414 Query: 422 D 422 D Sbjct: 415 D 415 >gi|261822330|ref|YP_003260436.1| translocation protein TolB [Pectobacterium wasabiae WPP163] gi|261606343|gb|ACX88829.1| Tol-Pal system beta propeller repeat protein TolB [Pectobacterium wasabiae WPP163] Length = 430 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/418 (23%), Positives = 189/418 (45%), Gaps = 17/418 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K+ + L+ + +HA V++ + P+ + K+ V +V Sbjct: 5 LKVAVSFLM-----LWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + W +LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPIDANRMPQQPATASEVTP-AAWTALGIDAVVVGQVQPSADGSYLVSYQL 118 Query: 131 WDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + ++ + F W R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 119 VDTSGNPGNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +S + K+AY T+ E ++ T + Sbjct: 178 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTF--ESGRSALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N + Sbjct: 235 AIRQVASFPRHNGAPSFSPDGNKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + NG +R++ + + V S G + +G Sbjct: 295 WFPDSQTLAYTSDQAGRPQVYKVNVNGGAPQRVTWEGSQNQDSDV-SADGKFLVTVGSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + ++L + + P+ +P+G +I+S K+ GS L + +GR Sbjct: 354 GAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLVSTDGR 409 >gi|319940885|ref|ZP_08015224.1| tol-Pal system beta propeller repeat protein TolB [Sutterella wadsworthensis 3_1_45B] gi|319805767|gb|EFW02548.1| tol-Pal system beta propeller repeat protein TolB [Sutterella wadsworthensis 3_1_45B] Length = 434 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 178/394 (45%), Gaps = 14/394 (3%) Query: 22 VLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + G A +++ + + IA F +EV++ DL+RS F Sbjct: 19 IAAGALSACPAFADLRIEITGVGANQIPIAIQPFQGASAAPTDPAEVIAADLERSGAFRR 78 Query: 82 IS--QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 IS Q++ + + P+ + GA V V G V R V +D +Q+ Sbjct: 79 ISVTQEASAENLEKPEGL---AAAGKAGAAVYVVGAVQALSDGRWDVRCLFYDAVSGEQL 135 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + R AH +D IY +TGE F S+I +V++ + L + D D Sbjct: 136 DSIGVSAGKDLLRMAAHRCADRIYTRLTGEGAMFASQIAYVAQLAKR---RYELIIADSD 192 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G R S + I+ P +SP+ +++AY ++++ + VY+ + R +++ NFR Sbjct: 193 GGVPRTALQSPEPII-SPTWSPDGRQLAYVSFEERKPI-VYVHELSTGRR-RKVANFRGN 249 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G+ +++ +D IY ++ + +R T + I+ YS D I F Sbjct: 250 NSAPAWSPDGRELAVALSRDGLTQIYRINADGSGLKRFTQSYGIDTEPVYSKDGRWIYFT 309 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G Q+Y G +R++ +SY P SP G +A+ ++ + VM Sbjct: 310 SDRGGTPQIYRQPVAGGAAERVTFG--SSYAISPDISPDGMRMAYISRIDAEYRLAVMDL 367 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 Q+ L+ + ++P+++P+GR L+++ + G Sbjct: 368 STGQDMLVTNTNRDESPSFAPNGRFLVYATEVSG 401 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKE 346 DL A R + ++ ++ + +SQI + + + +L + S+G + Q E Sbjct: 145 DLLRMAAHRCADRIYTRLTGEGAMFASQIAYVAQLAKRRYELIIADSDGGVPRTALQSPE 204 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLI 405 P WSP G +A+ F K + V + + R + N AP WSP GR L Sbjct: 205 -PIISPTWSPDGRQLAYVSFEERKPIVYVHELSTGRRRKVANFRGNNSAPAWSPDGRELA 263 Query: 406 FSRKKDGDTGSKLYSIDLNG-------RNETLINTPAYASDPQWVGF 445 + +DG T ++Y I+ +G ++ + P Y+ D +W+ F Sbjct: 264 VALSRDGLT--QIYRINADGSGLKRFTQSYGIDTEPVYSKDGRWIYF 308 >gi|296103329|ref|YP_003613475.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057788|gb|ADF62526.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 430 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/421 (24%), Positives = 183/421 (43%), Gaps = 64/421 (15%) Query: 32 IHAFVKVATNSANYSPVSIAFTKF------VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 +HA V++ S I F + ++ GG +V+ DL+ S FN + + Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDAGG----IVAADLRNSGKFNPLDRS 74 Query: 86 SFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGK 142 Q+ P S Q W++LG +V G+V V ++L D ++ + Sbjct: 75 RLPQQ---PGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAWQLVDTGGAPGTVLAQ 131 Query: 143 KFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + + R AH SD +++ +TG KG F +RI +V ++ G L V D DG Sbjct: 132 NSYKVTKQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGY 190 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N ++L Q L P +SP+ K+AY T+ E ++ T + A +++ +F Sbjct: 191 N-QFLVKRSSQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNG 247 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +D+ S ++T+ N S+ PDS + F SD Sbjct: 248 APSFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPSWFPDSQNLAFTSD 307 Query: 322 REGKEQLYVMQSNGSDQKRI----SQDKEA------------------------------ 347 + G+ Q+Y + NG +RI SQ++ A Sbjct: 308 QAGRPQIYKVNINGGAPQRITWEGSQNQNADVSSDGKFMVMVSSNGGQQHIAKQDLVAGG 367 Query: 348 ------SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWS 398 ++ D P +P G ++ ++ G + ++ DG + R+ D +++P WS Sbjct: 368 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARIPATDGQVKSPAWS 427 Query: 399 P 399 P Sbjct: 428 P 428 >gi|153207184|ref|ZP_01945963.1| TolB protein [Coxiella burnetii 'MSU Goat Q177'] gi|120576845|gb|EAX33469.1| TolB protein [Coxiella burnetii 'MSU Goat Q177'] Length = 437 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 162/361 (44%), Gaps = 8/361 (2%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DLQ S F + + Q + + I + W LV G + G R Sbjct: 57 IPQVIKNDLQNSGQFRVTGSGNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRY 115 Query: 125 RVEFRLWDVKD-RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--S 181 RV F L +V D +++ + F + R AH ISD IYQ +TG +G F+++I +V Sbjct: 116 RVAFTLINVFDSNNRLLSESFNVNAKELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQ 175 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S + K +L V D DG N + L S D + P +SP+ K+AY +++ +YL Sbjct: 176 ASSENTAAKYTLEVADADGFNPQPLLVS-DMPIMSPTWSPDGNKIAYVSFEGHRA-AIYL 233 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D R +R+ + AP FS + K+ + + K IY ++L +T Sbjct: 234 QDLATGRR-QRLSEAPGINGAPAFSPDSKQLALVLTKTGNPKIYILNLADGHLREITKGW 292 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ ++SPD ++F S+R+G Q+Y R++ + + P + P G I Sbjct: 293 SIDTEPAWSPDGKSLLFTSNRDGTPQIYNYSFADGSINRVTYRGDYN-ARPSFMPDGKSI 351 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F I Q ++L E ++P+ +P+G+ I++ + G SI Sbjct: 352 IMMHRENGLFGIARQDLSTGQVQILSESGTDESPSLAPNGKMAIYAMEYGGRGVLAQVSI 411 Query: 422 D 422 D Sbjct: 412 D 412 >gi|270263785|ref|ZP_06192054.1| protein TolB, precursor [Serratia odorifera 4Rx13] gi|270042669|gb|EFA15764.1| protein TolB, precursor [Serratia odorifera 4Rx13] Length = 430 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/415 (23%), Positives = 180/415 (43%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + ++V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPEDIGKIVGADLRNSGKFNPIDVARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + T+ + W +LG +V G+V + ++L D ++ + + Sbjct: 79 QPTSASEVTP-AAWTALGIDAVVVGQVQPGADGGYLISYQLVDTSGSPGTVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 138 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPYELRVADYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A ++I +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANGAIRQIASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R ++ K ++++Y ++L S ++T+ N ++ PD + + SD+ G+ Q Sbjct: 254 DGSRLAFALSKSGSLNLYVMNLGSGQITQITDGRSNNTEPTWFPDGQSLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRIS------QDKEAS--------------------------------- 348 +Y + ++G +R++ QD E S Sbjct: 314 IYKVSASGGASQRLTWEGSQNQDSEVSSDGKFLVMVSSNSGAQHIAKQDLGSGAVQVLTG 373 Query: 349 -YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 374 TFLDETPSIAPNGTMVIYSSTQGMGSVLQLVSTDGRFKARLPATDGQVKFPAWSP 428 >gi|261493428|ref|ZP_05989953.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496883|ref|ZP_05993251.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307407|gb|EEY08742.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310922|gb|EEY12100.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 428 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 182/392 (46%), Gaps = 31/392 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGKD 122 V++++S DL+ S F + + Q P S W+++G +V G+V G Sbjct: 56 VAQIISDDLRNSGKFTPLER---SQMPAQPGSAAEVVADQWSAIGIDNIVVGQVSSTGGG 112 Query: 123 RLRVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRI 177 V ++L D +I + F PA+ R+ AHT+SD++++ +T +G F ++I Sbjct: 113 -YNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKLTQIRGAFRTKI 171 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V V G+ L V D DG N +T S++ L P +SP+ ++AY T++++ Sbjct: 172 AYV---VQRGVSSYELRVSDYDGFNAFTITTSKEP-LMSPEWSPDGSRLAYVTFENKK-A 226 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +V + D R A + + + AP FS +G R + +D ++IY V +L Sbjct: 227 QVVVHDIR-SGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVGSGGGTPSKL 285 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T N S+SPD S I F SDR G Q+Y M S+G + SY V S Sbjct: 286 TANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMG--GSGSYNAKVSSDG 343 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTG 415 +LI +G++ V+K+D + V S ++P+ SP+G +I+S K T Sbjct: 344 KNLI---MIAGDR----VVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTK--GTS 394 Query: 416 SKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 L + +GR L + P W ++ Sbjct: 395 KVLQLVSADGRFKANLPGAGGHYKFPAWSPYL 426 >gi|290474099|ref|YP_003466975.1| outer membrane integrity protein [Xenorhabdus bovienii SS-2004] gi|289173408|emb|CBJ80185.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Xenorhabdus bovienii SS-2004] Length = 419 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/396 (23%), Positives = 184/396 (46%), Gaps = 13/396 (3%) Query: 33 HAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 HA V++ + P+ + K+ ++ +++ DL+ S FN I + Q+ Sbjct: 8 HAEVRIEITQGVDSARPIGVVPFKWTGAGNAPEEIGSIIAADLRNSGKFNPIDPNRMPQQ 67 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPA 149 + + W++LG ++ G++ V ++L D ++ + F Sbjct: 68 PSTASEV-TPAAWSALGIDSVIVGQIQPAADGNYLVSYQLVDTAGAPGTVMAQDQFKIEK 126 Query: 150 SW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 W R AHT SD +++ +TG KG F +R+ +V + G L V D DG N ++ Sbjct: 127 KWLRHAAHTASDQVFEKLTGIKGAFRTRLAYVVKKSSVGKYPYELRVSDYDGYN-QFTVH 185 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + L P + P+ ++AY T+ E ++ T A +++ +F AP FS + Sbjct: 186 RSPEPLMSPAWLPDGSQLAYVTF--ESGRSALVIQTLATTAVRQVASFPRHNGAPAFSPD 243 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + K ++++Y +DL S ++T+ N S+ PD+ +V+ SD+ G+ QL Sbjct: 244 GTKLAFVLSKTGSLNLYMMDLASGQIRQVTDGRSNNTEPSWMPDNQTLVYTSDQGGRPQL 303 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLLV 387 Y + NG +R++ + + V S ++ + SG + + K+D G+ ++ Sbjct: 304 YKIDINGGAPQRLTWEGSQNQDADVSSDGSFIVMVSSASGSQH---IAKQDLGTGSVQML 360 Query: 388 EDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 D+ L + P+ +P+G +I+S + T +L S D Sbjct: 361 TDTFLDETPSIAPNGTMVIYSSTQGLGTVLQLVSTD 396 >gi|307130109|ref|YP_003882125.1| periplasmic protein [Dickeya dadantii 3937] gi|32699714|sp|Q934G6|TOLB_DICD3 RecName: Full=Protein tolB; Flags: Precursor gi|16116637|emb|CAC82709.1| TolB protein [Erwinia chrysanthemi] gi|306527638|gb|ADM97568.1| periplasmic protein [Dickeya dadantii 3937] Length = 428 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 116/448 (25%), Positives = 205/448 (45%), Gaps = 38/448 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE----V 68 +KI L L++ + +HA V++ S I F S GG V E + Sbjct: 5 LKIALSFLML-----WTAVLHAEVRIEITQGVDSARPIGVVPFKST---GGAVPEEIGSI 56 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD--WNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL+ S FN I Q+ P S W +LG ++ G+V + D V Sbjct: 57 VAADLRNSGKFNPIDPSRMPQQ---PGSAAEVTPAAWTALGIDAVIVGQV-QPTADGYMV 112 Query: 127 EFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 ++L D ++ + F W R AHT SD++++ +TG KG F +RI +V ++ Sbjct: 113 SYQLVDTSGSAGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN 172 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G L V D DG N +++ + L P +S + K+AY T+ E ++ T Sbjct: 173 -GGQYPYELRVADYDGYN-QFVVHRSPEPLMSPSWSADGSKLAYVTF--ESGRSALVVQT 228 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + K++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N Sbjct: 229 LANGDIKQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNN 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ++ PDS + + SD+ G+ Q+Y + NG +R++ + + + S L+ + Sbjct: 289 TEPTWFPDSQTLAYTSDQAGRPQIYKIGINGGAPQRLTWEGSQNQDSEISSDGKFLVMVS 348 Query: 365 KFSGEKFAIGVMKKD----GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLY 419 SG + + K+D G Q ++ D+ L + P+ +P+G +I+S K+ GS L Sbjct: 349 SNSGAQH---IAKQDLVTGGVQ---VLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQ 400 Query: 420 SIDLNGR-NETLINTPAYASDPQWVGFM 446 + +GR L T P W +M Sbjct: 401 LVSTDGRFKARLPATDGQVRFPAWSPYM 428 >gi|145636350|ref|ZP_01792019.1| translocation protein TolB precursor [Haemophilus influenzae PittHH] gi|145270515|gb|EDK10449.1| translocation protein TolB precursor [Haemophilus influenzae PittHH] Length = 427 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 170/376 (45%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ ++G +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLSGIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SPN Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPNGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M +NG +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDANGGSATVVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|257465021|ref|ZP_05629392.1| translocation protein TolB [Actinobacillus minor 202] gi|257450681|gb|EEV24724.1| translocation protein TolB [Actinobacillus minor 202] Length = 425 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 188/433 (43%), Gaps = 57/433 (13%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHA----FVKVATNSANYSPVSIA-FTKFVSIDELGGKV 65 +N+K + +L ++ F + A + V + P+++ F S D V Sbjct: 1 MNLKSRITSVLGIMALLFSNVVRAESDVVISVDEGVSMAQPIAVVPFKGGASAD-----V 55 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +++VS DL+ S F + + + + + Q W +G ++V G+V G Sbjct: 56 AQIVSDDLRNSGKFTPVERSKLPAQPGSAGEVVS-QQWTDIGVDMVVVGQVTPAGGG-YN 113 Query: 126 VEFRLWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V ++L DV + ++ + F+ PA+ R+ AHT+SD +++ IT +G F ++I +V Sbjct: 114 VAYQLVDVLSNPAAVLAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYV--- 170 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V G+ L V D DG N + S++ L P +SP K+AY T++++ +V + D Sbjct: 171 VQRGVSSYELRVSDYDGFNAFTVVKSKEP-LMSPEWSPEGSKLAYVTFENKK-PQVVVHD 228 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R A + + + AP FS +G + + +D ++IY VD +LT Sbjct: 229 LR-SGARRVVAALKGHNGAPAFSPDGSKIAFASNQDGELNIYVVDANGGTPSKLTANAGN 287 Query: 304 NISASYSPDSSQIVFESDREGKEQLY--------------------VMQSNGSDQKRISQ 343 N S+SPD I F SDR G Q+Y M S+G I+ Sbjct: 288 NTEPSWSPDGGSIYFTSDRSGSPQVYRMSSSGGGASAVGGGKTYNAKMSSDGKSLIMIAG 347 Query: 344 DK--------------EASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLL 386 DK +++ D P SP G ++ ++ G + ++ DG + L Sbjct: 348 DKVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQLVSADGRFKANLP 407 Query: 387 VEDSNLQAPTWSP 399 + P WSP Sbjct: 408 GAGGQYKFPAWSP 420 >gi|194333584|ref|YP_002015444.1| WD40 domain-containing protein beta Propeller [Prosthecochloris aestuarii DSM 271] gi|194311402|gb|ACF45797.1| WD40 domain protein beta Propeller [Prosthecochloris aestuarii DSM 271] Length = 441 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/349 (28%), Positives = 165/349 (47%), Gaps = 22/349 (6%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS 159 F +S+GA+ L G V++ + + ++DV K ++ K + R I H Sbjct: 105 FPALSSVGAE-LYAGGVMERRGSTINMAMEVYDVLTGKLMLKKLYSGKRDDLRSIGHRFC 163 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D+ + ITG+ F+SR+ FVS ++G K + + + DG + +T S + P Sbjct: 164 ADLMELITGKPSVFDSRLAFVS---LNGG-KKEIFLSEFDGYGAKQVT-STGGMALTPSL 218 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRIGNF--RSMILAPRFSSNGKRALISV 276 SP+ +AY TY L D +I D A ++ + + + + P + + + Sbjct: 219 SPDSGLLAYLTYSGG------LPDLQIKDLATQKTVSVMKKGVKIDPSWRNGTLECATTF 272 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + +IY VD + RLT + I++S S+SPD ++ F S R G Q+++ + Sbjct: 273 SFEGDQEIYMVDRNGSVGRRLTRSRGIDVSPSFSPDGRKMAFVSSRHGSPQVFIKDLSSG 332 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNL-Q 393 + R++ + + P WSP D IAFT +GE I + DGS R L + + Sbjct: 333 RESRLTFSGKYNT-QPAWSPVDDKIAFTSMQKNGE-INIFTINADGSGLRQLTYRARQNE 390 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 AP WSP G ++FS +DG KL+ ++ NGRN+ + P P W Sbjct: 391 APGWSPDGSMIVFSSTRDGS--RKLFMMNANGRNQRSLKLPGEQMQPSW 437 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 10/164 (6%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI- 253 ++DR+G+ R LT SR I P FSP+ +K+A+ + +V++ D R + Sbjct: 282 MVDRNGSVGRRLTRSRG-IDVSPSFSPDGRKMAFVS-SRHGSPQVFIKDLSSGRESRLTF 339 Query: 254 -GNFRSMILAPRFSS-NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 G + + P +S + K A S+QK+ ++I++++ + +LT N + +SP Sbjct: 340 SGKYNTQ---PAWSPVDDKIAFTSMQKNGEINIFTINADGSGLRQLTYRARQNEAPGWSP 396 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 D S IVF S R+G +L++M +NG +Q+ + E P WS Sbjct: 397 DGSMIVFSSTRDGSRKLFMMNANGRNQRSLKLPGEQ--MQPSWS 438 >gi|52424778|ref|YP_087915.1| translocation protein TolB [Mannheimia succiniciproducens MBEL55E] gi|67461939|sp|Q65UN0|TOLB_MANSM RecName: Full=Protein tolB; Flags: Precursor gi|52306830|gb|AAU37330.1| TolB protein [Mannheimia succiniciproducens MBEL55E] Length = 431 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 174/391 (44%), Gaps = 47/391 (12%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F + + ++E+V+ DL+ S FN I Q+ + + W +LG Sbjct: 42 IAVVPFKTNGSVPADIAEIVTADLRNSGKFNPIPVSQMPQQPASASEVTP-DAWAALGVD 100 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 +V G+V G + + ++L D ++ + + A W R AHT+SD++++ Sbjct: 101 AIVVGQVTATG-NGYNIAYQLVDTVGASGGAGAVLAQNSVTVGAKWIRYGAHTVSDEVFE 159 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +T KG F +RI +V + G + V D DG N +++ Q + P +SP+ + Sbjct: 160 KLTAIKGAFRTRIAYVVQKN-GGSKPYEIRVADYDGFN-QFIVNRSSQPIMSPAWSPDGK 217 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 ++AY ++++ ++ + D A K + +F+ AP FS +G R + K+ ++I Sbjct: 218 RLAYVSFENRK-SQLVVQDLG-SGARKVVASFQGHNGAPAFSPDGSRLAFASNKEGQLNI 275 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG--------- 335 Y + +LT+ N S+SPD S I+F SDR G Q+Y M S+G Sbjct: 276 YVMGANGGQPTQLTSGSGNNTEPSWSPDGSSILFTSDRGGSPQVYRMSSSGGAASPVGGR 335 Query: 336 ------SDQKR----------ISQDKEASYFD----------PVWSPQGDLIAFTKFSGE 369 SD K + QD + + P SP G +I ++ G Sbjct: 336 GSAQISSDGKTLVMINGNNNVVKQDVTSGASEVLSTSFLGESPSLSPNGIMIIYSSTQGL 395 Query: 370 KFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + ++ DG + RL D ++ P WSP Sbjct: 396 GKVLQLVSADGRFKARLPGTDGQVKFPAWSP 426 >gi|37525407|ref|NP_928751.1| translocation protein TolB [Photorhabdus luminescens subsp. laumondii TTO1] gi|67461995|sp|Q7N6T6|TOLB_PHOLL RecName: Full=Protein tolB; Flags: Precursor gi|36784835|emb|CAE13748.1| TolB protein precursor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 430 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 99/433 (22%), Positives = 184/433 (42%), Gaps = 57/433 (13%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 K+ L +L++ + T HA V++ + P+ + K+ ++ +V Sbjct: 6 KVVLSILMLWV-----TVAHAEVRIEITQGVDSARPIGVVPFKWTGAGNAPEEIGAIVGA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I Q+ T + W++LG +V G++ + ++L Sbjct: 61 DLRNSGKFNPIDISRMPQQPTTTSEVTP-AAWSALGIDAVVVGQIQPSADGGFLISYQLV 119 Query: 132 DVKDRK-QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D ++ + F W R AHT SD +++ +TG KG F +R+ ++ ++ G Sbjct: 120 DTASAPGTVLAQDQFKVTKQWLRYAAHTASDQVFEKLTGIKGAFRTRLAYIVKTN-GGKY 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N ++ + L P +SP+ K+AY T+ E ++ T Sbjct: 179 PYELRVSDYDGYN-QFTVHRSPEPLMSPAWSPDGAKLAYVTF--ESGRSALVIQTLASGE 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ Sbjct: 236 VRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSAQIRQITDGRSNNTEPSW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEAS--------------- 348 PD+ +V+ SD+ G+ QLY NG +R++ QD + S Sbjct: 296 MPDNQTLVYTSDQGGRPQLYKTDINGGAPQRLTWEGTQNQDADVSADGNFVMMVSSESGK 355 Query: 349 -------------------YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLL 386 + D P +P G ++ ++ G + ++ DG + RL Sbjct: 356 QHIAKQDLATGAVQILTDTFLDETPSIAPNGTMVIYSSTQGLGTVLQLVSTDGRFKARLP 415 Query: 387 VEDSNLQAPTWSP 399 D ++ P WSP Sbjct: 416 ATDGQVKFPAWSP 428 >gi|251790482|ref|YP_003005203.1| translocation protein TolB [Dickeya zeae Ech1591] gi|247539103|gb|ACT07724.1| Tol-Pal system beta propeller repeat protein TolB [Dickeya zeae Ech1591] Length = 428 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 114/446 (25%), Positives = 201/446 (45%), Gaps = 34/446 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE----V 68 +KI L L+ + +HA V++ S IA F S GG V E + Sbjct: 5 LKIALSFLM-----LWTAVLHAEVRIEITQGVDSARPIAVVPFKSA---GGAVPEEIGNI 56 Query: 69 VSKDLQRSDVFNLISQDSFKQKI-TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ DL+ S FN I Q+ T + P W +LG ++ G+V + D V Sbjct: 57 VAADLRNSGKFNPIDPSRMPQQPGTAAEVTP--SAWTALGIDAVIVGQV-QPTADGYLVS 113 Query: 128 FRLWDVK-DRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++L D + ++ + F W R AHT SD++++ ++G KG F +RI +V ++ Sbjct: 114 YQLVDTSGNAGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN- 172 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G L V D DG N +++ + L P +S + K+AY T+ E ++ T Sbjct: 173 GGQYPYELRVADYDGYN-QFVVHRSPEPLMSPSWSSDGSKLAYVTF--ESGRSALVVQTL 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + ++I +F AP FS +G + ++ K ++++Y ++L S ++T+ N Sbjct: 230 ANGDIRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNT 289 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLI 361 ++ PDS + + SD+ G+ Q+Y + NG +R+ SQ+++A S G + Sbjct: 290 EPTWLPDSQTLAYTSDQAGRPQIYKVGINGGAPQRLTWEGSQNQDAEI-----SSDGKFL 344 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +G I ++L + + P+ +P+G +I+S K+ GS L + Sbjct: 345 VMVSSNGGAQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSSKQ--GLGSVLQLV 402 Query: 422 DLNGR-NETLINTPAYASDPQWVGFM 446 +GR L T P W +M Sbjct: 403 STDGRFKARLPATDGQVRFPAWSPYM 428 >gi|21673468|ref|NP_661533.1| TolB protein, putative [Chlorobium tepidum TLS] gi|32699704|sp|Q8KEQ0|TOLB_CHLTE RecName: Full=Protein tolB; Flags: Precursor gi|21646573|gb|AAM71875.1| tolB protein, putative [Chlorobium tepidum TLS] Length = 434 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 117/442 (26%), Positives = 195/442 (44%), Gaps = 38/442 (8%) Query: 18 CLLLVLIGGFF-PTSIHA---FVKVATNSANYSPVSIAFTKFVSIDELGGKVSE------ 67 CL ++L G F P ++ A +A S +++ K S D GGK E Sbjct: 10 CLCIMLFGMLFVPFTLRAEEVGEYIAIRKEGASRIAVVLDK-TSAD--GGKQREWARSLD 66 Query: 68 -VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 ++K L + +FNL+ + N F S+G + G V K R + Sbjct: 67 VTINKGLDFTGLFNLLPAPLNIRNGQNGGL--NFASIASVGGDIYAGGSVTKR-SGRPVL 123 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E ++D K ++ + + + R I D+ + +TG++ F +RI+FV+ + Sbjct: 124 EMHVYD-SSGKSLLARTYTGEESQLRAIGLRFCADLVELLTGKRSVFGTRIVFVANR--T 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + +C D DG N+ LT SR I P SP+ +A+ Y + L I Sbjct: 181 GNKEIYMC--DFDGENVVQLTNSRS-ISLTPAVSPDGTYIAWTDYTSG---KPNLYIKNI 234 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 K N + ++P + + ++ + D+Y + RLT I++S Sbjct: 235 ATGAKVSVNKHGVCISPAWRPGTNTLVTTLSYEGDQDLYLIRADGTVERRLTKGGGIDVS 294 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++SPD S++ F S R+G Q+++ N +R++ + P WSP GD I ++ Sbjct: 295 PTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQVRRLTYSGIYNT-QPSWSPNGDKILYSSM 353 Query: 367 --SGE--KFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 SGE F+I V DGS L S N + P+WSP G ++FS +DG +LY + Sbjct: 354 QKSGEINIFSINV---DGSGLLQLTSGSGNNEHPSWSPDGSMIVFSSTRDGR--RRLYVM 408 Query: 422 DLNGRNE-TLINTPAYASDPQW 442 + +G N+ L+N P W Sbjct: 409 NADGSNQRPLLNMQGEQQQPSW 430 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++ DG R LT I P FSP+ K+A+ + + ++++ D + +R Sbjct: 272 LYLIRADGTVERRLTKG-GGIDVSPTFSPDGSKMAFVS-TRQGGPQIFIQDMNSGQV-RR 328 Query: 253 IGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + P +S NG + L S +QK ++I+S+++ + +LT+ N S+SP Sbjct: 329 LTYSGIYNTQPSWSPNGDKILYSSMQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSP 388 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 D S IVF S R+G+ +LYVM ++GS+Q+ + + + P WS Sbjct: 389 DGSMIVFSSTRDGRRRLYVMNADGSNQRPL-LNMQGEQQQPSWS 431 >gi|254362584|ref|ZP_04978681.1| TonB family auxiliary protein TolB [Mannheimia haemolytica PHL213] gi|153094190|gb|EDN75077.1| TonB family auxiliary protein TolB [Mannheimia haemolytica PHL213] Length = 396 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 102/355 (28%), Positives = 170/355 (47%), Gaps = 28/355 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGKD 122 V++++S DL+ S F + + Q P S W+++G +V G+V G Sbjct: 56 VAQIISDDLRNSGKFTPLER---SQMPAQPGSAAEVVADQWSAIGIDNIVVGQVSSTGGG 112 Query: 123 RLRVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRI 177 V ++L D +I + F PA+ R+ AHT+SD++++ +T +G F ++I Sbjct: 113 -YNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKLTQIRGAFRTKI 171 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V V G+ L V D DG N +T S++ L P +SP+ ++AY T++++ Sbjct: 172 AYV---VQRGVSSYELRVSDYDGFNAFTITTSKEP-LMSPEWSPDGSRLAYVTFENKK-A 226 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +V + D R A + + + AP FS +G R + +D ++IY V +L Sbjct: 227 QVVVHDIR-SGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVGSGGGTPSKL 285 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T N S+SPD S I F SDR G Q+Y M S+G + SY V S Sbjct: 286 TANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMG--GSGSYNAKVSSDG 343 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKK 410 +LI +G++ V+K+D + V S ++P+ SP+G +I+S K Sbjct: 344 KNLI---MIAGDR----VVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTK 391 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF- 363 +S +SPD S++ + + K Q+ V S +R+ + P +SP G IAF Sbjct: 205 MSPEWSPDGSRLAYVTFENKKAQVVVHDIR-SGARRVVAALKGHNGAPSFSPDGSRIAFA 263 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + GE V G+ +L N P+WSP G ++ F+ + G Sbjct: 264 SNQDGELNIYVVGSGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAG 312 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERL 385 +L V +G + I+ KE P WSP G +A+ F +K + V + G++ + Sbjct: 183 ELRVSDYDGFNAFTITTSKEP-LMSPEWSPDGSRLAYVTFENKKAQVVVHDIRSGARRVV 241 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 + AP++SP G + F+ +DG+ +Y + G + L ++P W Sbjct: 242 AALKGHNGAPSFSPDGSRIAFASNQDGEL--NIYVVGSGGGTPSKLTANAGNNTEPSW 297 >gi|157369522|ref|YP_001477511.1| translocation protein TolB [Serratia proteamaculans 568] gi|166988079|sp|A8GB93|TOLB_SERP5 RecName: Full=Protein tolB; Flags: Precursor gi|157321286|gb|ABV40383.1| Tol-Pal system beta propeller repeat TolB [Serratia proteamaculans 568] Length = 430 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/415 (23%), Positives = 178/415 (42%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + ++V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPEDIGKIVGADLRNSGKFNPIDVARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + T + W +LG +V G+V + ++L D ++ + + Sbjct: 79 QPTTASEVTP-AAWTALGIDAVVVGQVQPGADGGYLISYQLVDTSGSPGTVLAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ +TG KG F +RI +V ++ G L V D DG N ++ Sbjct: 138 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPYELRVADYDGYN-QFTV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A ++I +F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANGAIRQIASFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R ++ K ++++Y ++L S ++T+ N ++ PD + + SD+ G+ Q Sbjct: 254 DGSRLAFALSKSGSLNLYVMNLGSGQITQITDGRSNNTEPTWFPDGQSLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRIS------QDKEAS--------------------------------- 348 +Y + ++G +R++ QD E S Sbjct: 314 IYKVSASGGASQRLTWEGSQNQDSEVSSDGKFLVMVSSNSGAQHIAKQDLGSGAVQVLTG 373 Query: 349 -YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 374 TFLDETPSIAPNGTMVIYSSTQGMGSVLQLVSTDGRFKARLPATDGQVKFPAWSP 428 >gi|33152785|ref|NP_874138.1| colicin tolerance protein [Haemophilus ducreyi 35000HP] gi|67462000|sp|Q7VKU3|TOLB_HAEDU RecName: Full=Protein tolB; Flags: Precursor gi|33149009|gb|AAP96527.1| colicin tolerance protein [Haemophilus ducreyi 35000HP] Length = 426 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 186/385 (48%), Gaps = 29/385 (7%) Query: 48 VSIAFTKFVSIDELGGKVSE----VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--Q 101 VSIA V ++ G VSE VV+ DL+ S F I + ++P S+ Q Sbjct: 36 VSIAQPIAVVPFKVNGGVSEDVGQVVADDLRNSGKFTPIQRAKLP---SHPASVAEINSQ 92 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPAS-WRKIAHTIS 159 W +G V+V G+ I + V ++L D + + ++ + F+ PA+ R+ AHT+S Sbjct: 93 QWTDIGVDVVVVGQ-ITPANNGYNVAYQLVDTLSNPAVVLVQGSFNVPATQMRQAAHTVS 151 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D I++ +T +G F ++I +V V G+ L V D DG N + S++ L P + Sbjct: 152 DQIFEKLTQIRGAFRTKIAYV---VQRGVSAYELRVADYDGFNAFTVVKSKEP-LMSPEW 207 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SPN K+AY T++++ ++ + D R + + + AP FS +G R + +D Sbjct: 208 SPNGSKLAYVTFENKR-PQIVVHDLRSGQR-SVVAALKGHNGAPAFSPDGSRLAFASNQD 265 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++IY ++ +LT + N S+SPD S I F SDR G Q+Y M S+G+D Sbjct: 266 GELNIYIANINGGTPIKLTANVGNNTEPSWSPDGSIIYFTSDRAGSPQVYRMSSSGNDVI 325 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTW 397 I SY S +LI +G+ V+K+D + V S ++P+ Sbjct: 326 PIG--TRGSYNAKASSDGKNLI---MIAGDN----VVKQDLTSGSTEVLSSTFLDESPSI 376 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSID 422 SP+G +I+S K +L S D Sbjct: 377 SPNGIMIIYSSTKGTSKVLQLVSAD 401 >gi|1685080|gb|AAC44597.1| TolB [Haemophilus influenzae] Length = 427 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 173/377 (45%), Gaps = 49/377 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +TG +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ + Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENK---KS 226 Query: 240 YLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 L+ ++ +++ +F+ AP FS +G R + +D ++IY + +LT Sbjct: 227 QLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLT 286 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKE---- 346 + N ++SPD + I+F SDR G Q+Y M +NG +IS D + Sbjct: 287 SGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDANGGSVTSVGGRGSAQISADGKTLVM 346 Query: 347 ---------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-Q 382 S+ P SP G +I ++ G + ++ DG + Sbjct: 347 INGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFK 406 Query: 383 ERLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 407 ASLPGSDGQVKFPAWSP 423 >gi|94967623|ref|YP_589671.1| TolB-like protein [Candidatus Koribacter versatilis Ellin345] gi|94549673|gb|ABF39597.1| TolB-like protein [Candidatus Koribacter versatilis Ellin345] Length = 438 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 116/442 (26%), Positives = 201/442 (45%), Gaps = 36/442 (8%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS---IDELGGKVSEVVSKDLQRSD 77 L+LI T+ ++K TN V +A F + + L + + DL ++ Sbjct: 10 LLLIASLPLTAQTDWIKTGTN-LGVEKVRLAVPDFKAGQGSESLSAAFDQTLWNDLYQAG 68 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSL--GAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +F+L+S+ + S W + A +L G I + + V+ L+DVK+ Sbjct: 69 LFDLVSKSFNPTQAPGQPSEVELNTWGAPPPNASMLAFGN-INVANNEVTVQGWLYDVKN 127 Query: 136 RK--QIIGKKFFSSPA--SWRKIAHTISDDI-YQSITGEKGDFNSRILFVSESVVSGIIK 190 + Q++GK++ + + R IAH +D+I ++ G +G S+I F+S Sbjct: 128 PQTPQVLGKQYKNGATVENTRLIAHKFADEIIFRLGGGIQGIAESKIYFISTRTG----H 183 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + MD DG+N + +T I+ PR SP+ +VAY+ + + +Y T + R+ Sbjct: 184 KEIWAMDYDGSNQKPIT-HLGSIVLSPRASPDGARVAYSWMTNGWEIGIY--STELGRSV 240 Query: 251 K--RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 R+G S AP FS +G R S + +IY+ D+ +RLTN + S + Sbjct: 241 NFARLGGTNS---APAFSGDGNRLAFSSSRSGDPEIYTSDISGANLKRLTNVKGPDTSPT 297 Query: 309 YSPDS-SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI--AFTK 365 ++P + +QI F S R G Q+Y M +GS+ +++ A P WSP G + A+T+ Sbjct: 298 WNPKTNAQIAFVSGRTGLPQIYTMDVDGSNVIKMTDQGYA--ISPSWSPNGQFLVFAWTR 355 Query: 366 FSGEKFA----IGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYS 420 G I +M Q L D P+W+P GR ++F + G +++S Sbjct: 356 HYGPGAPGAQDIYIMDVASHQWVQLTHDGGRNDFPSWAPDGRHVVFQSSRSGR--EEIWS 413 Query: 421 IDLNGRNETLINTPAYASDPQW 442 + +G +T + S P W Sbjct: 414 MLADGSQQTQLTNSGANSMPNW 435 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D GAN++ LT + P ++P + ++Y MD K Sbjct: 277 DISGANLKRLTNVKGPDT-SPTWNPKTNAQIAFVSGRTGLPQIYTMDVDGSNVIKMTD-- 333 Query: 257 RSMILAPRFSSNGKRALISVQKD------EAMDIYSVDLQSNATERLTNTLFINISASYS 310 + ++P +S NG+ + + + A DIY +D+ S+ +LT+ N S++ Sbjct: 334 QGYAISPSWSPNGQFLVFAWTRHYGPGAPGAQDIYIMDVASHQWVQLTHDGGRNDFPSWA 393 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 PD +VF+S R G+E+++ M ++GS Q +++ S P WS Sbjct: 394 PDGRHVVFQSSRSGREEIWSMLADGSQQTQLTNSGANSM--PNWS 436 >gi|33519798|ref|NP_878630.1| translocation protein TolB [Candidatus Blochmannia floridanus] gi|67462001|sp|Q7VR84|TOLB_BLOFL RecName: Full=Protein tolB; Flags: Precursor gi|33504143|emb|CAD83405.1| tolB protein precursor [Candidatus Blochmannia floridanus] Length = 460 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 177/364 (48%), Gaps = 21/364 (5%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFK---QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 ++ +++ DL+ S FN + K+T D IP F W LG +V G + + + Sbjct: 61 IASIIAADLRNSGKFNTLPIAYLPYQPSKLT--DIIPTF--WEKLGINTVVLGAINIKNE 116 Query: 122 DRLRVEFRLWDVKDRKQ--IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + + + ++L D + I+ ++ R AHTISD+I++ +TG KG F +RI + Sbjct: 117 NYV-ISYQLIDTSNNPALVILDNQYEIEKKHLRYTAHTISDEIFEKLTGIKGVFCTRIAY 175 Query: 180 VSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + + IK + LC D DG N + S + L P +SP+ +K+AY T+ Sbjct: 176 I---LYTNNIKYAYELCTSDYDGHNQVSICRSSEP-LMSPAWSPDGKKLAYVTFASGH-- 229 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 ++ T +R+ I F + AP +S +GK+ S+ K ++++Y +DL SN +++ Sbjct: 230 SELIIQTLTNRSIDNIIQFPNHNGAPAWSPDGKKLAFSLSKTGSLNLYIMDLSSNNIQQI 289 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSP 356 T+ + N S+ PDS + + SD+ G Q+Y + +N D RIS S P S Sbjct: 290 TSNRYNNTEPSWFPDSQNLAYTSDQGGVPQVYKININNNRDSHRISW-LNGSNQKPNISM 348 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG 415 G + + K I + +E L DS L P+ SP+G ++S ++ Sbjct: 349 DGTFMVMVNRNKGKQYISKLNFLTGEEETLTADSVLADTPSISPNGIMFMYSSIILNNSS 408 Query: 416 SKLY 419 S+LY Sbjct: 409 SELY 412 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIG 374 I++ ++ + +L +G +Q I + E P WSP G +A+ F SG I Sbjct: 176 ILYTNNIKYAYELCTSDYDGHNQVSICRSSEP-LMSPAWSPDGKKLAYVTFASGHSELII 234 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + S + ++ ++ AP WSP G+ L FS K G LY +DL+ N I + Sbjct: 235 QTLTNRSIDNIIQFPNHNGAPAWSPDGKKLAFSLSKTGSL--NLYIMDLSSNNIQQITSN 292 Query: 435 AY-ASDPQW 442 Y ++P W Sbjct: 293 RYNNTEPSW 301 >gi|260912913|ref|ZP_05919398.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella dagmatis ATCC 43325] gi|260632903|gb|EEX51069.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella dagmatis ATCC 43325] Length = 432 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/401 (24%), Positives = 174/401 (43%), Gaps = 59/401 (14%) Query: 47 PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT-----NPDSIPRFQ 101 P+++ K+ ++++++ DL+ S FN I + Q+ T NP++ Sbjct: 39 PIAVVPFKWNGPGSAPADIADIIASDLRNSGKFNPIPVNRMPQQPTSVAEVNPEA----- 93 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAH 156 W SLG +V G+V + ++L D ++ + ++ W R AH Sbjct: 94 -WASLGIDAVVVGQVTPA-NGGFNIAYQLVDTIGATGSAGAVLAQNQYTVTNKWLRYGAH 151 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 T+SD+ ++ +TG KG F +RI ++ + G + V D DG N +++ Q L Sbjct: 152 TVSDETFEKLTGIKGAFRTRIAYIVQKN-GGSQPYEVRVSDYDGFN-QFIVNRSSQPLMS 209 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +S + +K+AY ++++ ++ + D A K + +F+ AP FS +G R + Sbjct: 210 PAWSADGKKLAYVSFENRK-SQLVVQDLG-SGARKVVASFKGHNGAPAFSPDGSRLAFAS 267 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D ++IY ++L S +LT N S+SPD IVF SDR G Q+Y M + G Sbjct: 268 SQDGVLNIYVMNLGSGQIAQLTRGAGNNTEPSWSPDGQTIVFTSDRSGSPQVYQMSATGG 327 Query: 337 DQKRISQDK-----------------------------------EASYFD--PVWSPQGD 359 +S +++ D P SP G Sbjct: 328 GASLVSAGGRSYSGQITADGSTLIMISGDNIIKKDLVSGSTEVLSSTFLDESPSISPNGI 387 Query: 360 LIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 +I ++ G + ++ DG + RL D ++ P WSP Sbjct: 388 MIIYSSTQGLGKVLQLVSADGRFKARLPGNDGQVKFPAWSP 428 >gi|189220463|ref|YP_001941103.1| Periplasmic component of the Tol biopolymer transport system [Methylacidiphilum infernorum V4] gi|189187321|gb|ACD84506.1| Periplasmic component of the Tol biopolymer transport system [Methylacidiphilum infernorum V4] Length = 365 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 181/395 (45%), Gaps = 45/395 (11%) Query: 55 FVSIDELGGKVSEVVSKDLQRSDVFN---LISQDSFKQKIT--NPDSIPRFQDWNSLGAQ 109 + ++ GGKV V + Q D N ++S+D + + +P+ R++ Sbjct: 3 YAQVEVTGGKV-RVFLEQFQGKDAENCRKIVSRDLLQTLLVEVSPEENQRYE-------- 53 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 +T R+ + +E L D +++++ K F A R+ AH SD + +++TG Sbjct: 54 --ITARLSDKA-----LEGILVDKVKKRELLHKSFVG--AEMRQSAHLFSDALLEALTGI 104 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 KG + +I F+S +G L +MD DG ++ LT + I PR+S + +AY Sbjct: 105 KGFSSCKIAFISSE--TGF--KELYMMDMDGEGLQRLTADK-TISAHPRWSHDHSMIAYT 159 Query: 230 TYDD--EDILRVYLM-DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 +Y D+ + L +RI R F + FS + + +++ KD +IY Sbjct: 160 SYKSGYPDVYIIKLAKHSRI-----RFSFFPGVNSGASFSPDDQNIALTLSKDGNPEIYI 214 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + + +LT N S +SPD QIV+ SD G QLY++ + G KR+ Sbjct: 215 MGIDGGPPRQLTRNRATNTSPCWSPDGKQIVYTSDERGSIQLYIISAEGGQPKRLITGNT 274 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 S +P WS G IAF+ G +F IG+ + +Q +L + P+W+P+ R L++ Sbjct: 275 YSS-EPDWSADGQKIAFSARIGGQFQIGIFNLNTNQASILTTQGG-EDPSWTPNSRHLVY 332 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDP 440 + + LY +D R +N + S+P Sbjct: 333 ASQ------GSLYLMDTVSRQSIKLNCELKHCSEP 361 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++Y +D+ +RLT I+ +S D S I + S + G +Y+++ + R S Sbjct: 123 ELYMMDMDGEGLQRLTADKTISAHPRWSHDHSMIAYTSYKSGYPDVYIIKLAKHSRIRFS 182 Query: 343 QDKEASYFDPV-----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPT 396 +F V +SP IA T I +M DG R L + + +P Sbjct: 183 ------FFPGVNSGASFSPDDQNIALTLSKDGNPEIYIMGIDGGPPRQLTRNRATNTSPC 236 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQW 442 WSP G+ ++++ + G +LY I G+ + LI Y+S+P W Sbjct: 237 WSPDGKQIVYTSDERGSI--QLYIISAEGGQPKRLITGNTYSSEPDW 281 >gi|145634622|ref|ZP_01790331.1| translocation protein TolB precursor [Haemophilus influenzae PittAA] gi|145268167|gb|EDK08162.1| translocation protein TolB precursor [Haemophilus influenzae PittAA] Length = 427 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 172/376 (45%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +TG +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKE----- 346 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMI 347 Query: 347 --------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 S+ P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|332290106|ref|YP_004420958.1| translocation protein TolB [Gallibacterium anatis UMN179] gi|330433002|gb|AEC18061.1| translocation protein TolB [Gallibacterium anatis UMN179] Length = 432 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 103/406 (25%), Positives = 186/406 (45%), Gaps = 39/406 (9%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 CLL+ T + A V++ + + P+++ K+ +++++S DL+ Sbjct: 15 CLLVQA------TQVFAEVRIVIDEGVDSARPIAVVPFKWNGPGSAPADIADIISSDLRF 68 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S FN I D Q+ T+ + + W++LG +V G+V G + ++L D Sbjct: 69 SGKFNPIPVDRMPQQPTSAGEV-NVEAWSALGIDAIVVGQVTPAGGG-YSISYQLVDTVG 126 Query: 136 RK----QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + ++ W R AHT+SD +++ +TG +G F +RI +V I Sbjct: 127 ASGTPGAVLSQNSYTVTNQWIRWGAHTVSDQVFEKLTGIRGAFRTRIAYV-------IQN 179 Query: 191 NS----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 NS L V D DG N + S I+ P +S + +K+AY+ ++ + L V + Sbjct: 180 NSGSYDLQVSDYDGYNAFNVFHSSQPIM-SPAWSADGKKLAYSVFEKKKSLLV--LQDLA 236 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 ++ K I + AP FS +G R + +D ++IY + + + +LT+ N Sbjct: 237 SKSRKIIASLPGHNGAPSFSPDGSRIAFASNEDGVLNIYVMGVGGGSPVKLTSGSGNNTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+S D S I+F SDR G +Y+M +NG +S + + SP G I Sbjct: 297 PSWSSDGSSIIFTSDRGGAPAVYMMGANGGGASLVSPPGNS--YSGEMSPDGKEIVMVN- 353 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKK 410 G K +KKD + S ++P+++P+G +I+S + Sbjct: 354 -GNKL----VKKDLESGSITALTSTFLDESPSFAPNGTMVIYSSTQ 394 >gi|85713384|ref|ZP_01044391.1| Periplasmic component of the Tol biopolymer transport system [Idiomarina baltica OS145] gi|85692790|gb|EAQ30781.1| Periplasmic component of the Tol biopolymer transport system [Idiomarina baltica OS145] Length = 298 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 154/299 (51%), Gaps = 12/299 (4%) Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 +R+ +H ISD +Y+++TGEKG F +RI +V+ + L V D DGAN + L S Sbjct: 9 FRQYSHRISDVVYEALTGEKGAFMTRIAYVTVNQ-DDQYPYKLLVADYDGANEKVLLRS- 66 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + L P +SP+ K+AY +++++ +++ D R +++ +F + +P FS G Sbjct: 67 PEPLMSPSWSPDGNKLAYVSFENKRP-EIFVQDIYTTRR-EKVTSFPGINGSPVFSPKGD 124 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + + KD ++Y +DL++ +RLT I+ S++PD IVF S+R G+ QLY Sbjct: 125 KMAMVLSKDGNPELYVMDLKTKNLQRLTRNRTIDTEPSWTPDGRSIVFTSERGGRPQLYS 184 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + + D +R++ + E + V P GD + + + I + ++L + Sbjct: 185 VNLSSGDVRRLTFEGEQNLGGTVM-PSGDSMILVNRTNGNYHIARQEFPRGTMQVLTRTA 243 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD---PQWVGFM 446 ++P+ +P+G +I+S + L S D GR + + PA + + P W FM Sbjct: 244 LDESPSVAPNGSMVIYSTTHNNKQVLALVSTD--GRFKARL--PASSGEVKSPSWSPFM 298 >gi|32491161|ref|NP_871415.1| hypothetical protein WGLp412 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|32699700|sp|Q8D2E2|TOLB_WIGBR RecName: Full=Protein tolB; Flags: Precursor gi|25166368|dbj|BAC24558.1| tolB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 431 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 111/431 (25%), Positives = 209/431 (48%), Gaps = 37/431 (8%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 LL LI FF + ++ V ++ N I + F V+ + +S+++S DLQ Sbjct: 4 LLFFLICVFFSKTSYSNVDISINKGIDISTPIGISSFEWVEVNENNNYENISKIISCDLQ 63 Query: 75 RSDVFNLI-----SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 S F+ I S S +++I N +SI + N L ++TG++ + ++ Sbjct: 64 NSGKFSPIEIYKESNKSIEKQIKN-NSI----NLNKLNINTILTGKISLNYNGEYLISYK 118 Query: 130 LWDVKDRKQIIGKKFFSSP-----ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 L D+ + GK S S+RK+AH IS++I++ +TG +G F++RI ++ + Sbjct: 119 LIDLVNYP---GKILLSGYRTVHLQSFRKVAHEISNEIFKKLTGIQGVFHTRIAYILYNK 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + K LC+ D DG N + S + L P +SP+ +K+AY T++ + + D Sbjct: 176 -NNEYKYKLCISDYDGYNQNIIHQS-NMPLMSPSWSPDGKKIAYVTFEKGS-SEIKIKDI 232 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + K I +F AP FS NG+ ++ K ++++Y ++L++ +++T+ N Sbjct: 233 KTGSI-KHISSFPYHNGAPAFSPNGENLAFALSKTGSLNLYVMNLKNGYIKQITHGNSNN 291 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDL 360 S+ PD++ + + SD+ G Q+Y + + R+ S+++ A+ SP G Sbjct: 292 TEPSWFPDNNSLAYTSDQSGTPQIYKINISNGKFNRLSWLGSKNQNANV-----SPDGKF 346 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IA + I + + +++ E +AP+ SP+ +I++ GD+ S + Sbjct: 347 IAMVNSEKKSQHIALFDINMDNAKIITETFLDEAPSISPNNVMIIYTSSY-GDS-SVIEL 404 Query: 421 IDLNGRNETLI 431 I NGR +T I Sbjct: 405 ISTNGRFKTSI 415 >gi|148825336|ref|YP_001290089.1| translocation protein TolB [Haemophilus influenzae PittEE] gi|166229979|sp|A5UAA5|TOLB_HAEIE RecName: Full=Protein tolB; Flags: Precursor gi|148715496|gb|ABQ97706.1| translocation protein TolB precursor [Haemophilus influenzae PittEE] gi|309972459|gb|ADO95660.1| Outer membrane integrity protein TolB [Haemophilus influenzae R2846] Length = 427 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 172/376 (45%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLNFG-ARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKE----- 346 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTLVMI 347 Query: 347 --------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 S+ P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|301169084|emb|CBW28681.1| periplasmic protein [Haemophilus influenzae 10810] Length = 427 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAMSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEIRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|320539139|ref|ZP_08038810.1| periplasmic protein [Serratia symbiotica str. Tucson] gi|320030777|gb|EFW12785.1| periplasmic protein [Serratia symbiotica str. Tucson] Length = 430 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 93/415 (22%), Positives = 177/415 (42%), Gaps = 52/415 (12%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+++ K+ + ++V DL+ S F I Q Sbjct: 19 LHAEVRIEITQGVDSARPIAVVPFKWAGSGTPPEDIGKIVGADLRNSGKFTPIDVARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + T + W +LG +V G+V + ++L D ++ + F Sbjct: 79 QPTTASEVTP-AAWTALGIDAVVVGQVQPGADGSYLISYQLVDTSGSPGSVLAQNQFKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT SD++++ + G KG F +RI ++ ++ G L V D DG N +++ Sbjct: 138 QQWLRYSAHTASDEVFEKLIGTKGAFRTRIAYIVQTN-GGKFPYELRVADYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T+ E ++ T + A +I F AP FS Sbjct: 196 HRSPEPLMSPAWSPDGSKLAYVTF--ESGRSALVVQTLANGAISQIAAFPRHNGAPAFSP 253 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R ++ K ++++Y ++L S ++T+ N ++ PD + + SD+ G+ Q Sbjct: 254 DGSRLAFALSKSGSLNLYVMNLGSGQMTQITDGRSNNTEPAWFPDGQTLAYTSDQGGRPQ 313 Query: 328 LYVMQSNGSDQKRI----SQDKEA------------------------------------ 347 +Y + ++G +R+ SQ++ A Sbjct: 314 IYKISASGGASQRLTWEGSQNQNAMVSSDGKFLVMVSSNNGVQHIAKQDLGSGAVQVLTG 373 Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 374 TLLDETPSIAPNGTMVIYSSMQGIGSVLQLVSTDGRFKARLPATDGQVKSPAWSP 428 >gi|68248985|ref|YP_248097.1| translocation protein TolB [Haemophilus influenzae 86-028NP] gi|81336603|sp|Q4QNG0|TOLB_HAEI8 RecName: Full=Protein tolB; Flags: Precursor gi|68057184|gb|AAX87437.1| TolB [Haemophilus influenzae 86-028NP] Length = 427 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 172/376 (45%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKE----- 346 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMI 347 Query: 347 --------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 S+ P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|16272330|ref|NP_438543.1| translocation protein TolB [Haemophilus influenzae Rd KW20] gi|260580555|ref|ZP_05848383.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae RdAW] gi|1174729|sp|P44677|TOLB_HAEIN RecName: Full=Protein tolB; Flags: Precursor gi|1573352|gb|AAC22040.1| colicin tolerance protein (tolB) [Haemophilus influenzae Rd KW20] gi|260092897|gb|EEW76832.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae RdAW] Length = 427 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 172/376 (45%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKE----- 346 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMI 347 Query: 347 --------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 S+ P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|145632629|ref|ZP_01788363.1| translocation protein TolB precursor [Haemophilus influenzae 3655] gi|229844455|ref|ZP_04464595.1| translocation protein TolB [Haemophilus influenzae 6P18H1] gi|144986824|gb|EDJ93376.1| translocation protein TolB precursor [Haemophilus influenzae 3655] gi|229812704|gb|EEP48393.1| translocation protein TolB [Haemophilus influenzae 6P18H1] Length = 427 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|260582354|ref|ZP_05850147.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae NT127] gi|260094722|gb|EEW78617.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae NT127] Length = 427 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 170/379 (44%), Gaps = 53/379 (13%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED---I 236 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ + Sbjct: 172 VVQKN-GGSQPYEIRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV 229 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 ++ TR K + +F+ AP FS +G R + +D ++IY + + Sbjct: 230 IQDLNSGTR-----KVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQ 284 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEAS 348 LT+ N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 285 LTSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTL 344 Query: 349 YF---------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 P SP G +I ++ G + ++ DG Sbjct: 345 VMINGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGR 404 Query: 382 -QERLLVEDSNLQAPTWSP 399 + L D ++ P WSP Sbjct: 405 FKASLPGSDGQVKFPAWSP 423 >gi|196233271|ref|ZP_03132117.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] gi|196222742|gb|EDY17266.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] Length = 564 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 154/385 (40%), Gaps = 49/385 (12%) Query: 48 VSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLG 107 + IA D GG ++++ DL S FNL+ S + + NSL Sbjct: 37 IPIAIGSIAGAD--GGPAAKILQNDLAMSGYFNLVPSASAGFIVGGT------SNGNSLA 88 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 V DR K ++ K F S R H +D+I +++T Sbjct: 89 GSV----------TDR-----------SGKTVLMKTF---SGSARGKVHAYADEIVETLT 124 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G KG +S++ FV + + D DG+N+R LT + I PR SP+ + Sbjct: 125 GNKGIASSKVAFVGTHTG----HKEIYLADADGSNVRQLT-NDANISVGPRLSPDGSHLV 179 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y Y VY +D A RI F +S NG+ + + KD ++Y+ Sbjct: 180 YTGYK-SGYADVYEIDLG-SGARNRIIKFPGTNTGAAYSPNGRELAVILSKDGNPELYTT 237 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 RLT+T + S ++SP +I++ SD G QLY + S G + IS Sbjct: 238 SAGGGGAHRLTHTPGVESSPTWSPSGDEIIYSSDDRGGPQLYRISSGGGSGRLISTG-HG 296 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +P WSP G +AFT G F I V+ GS V + P W R LIF+ Sbjct: 297 YNTEPNWSPDGKKVAFTVRDG-GFTIAVLDL-GSGNVHTVGSG--EGPAWGADSRHLIFA 352 Query: 408 RKK-----DGDTGSKLYSIDLNGRN 427 D TG K + G+N Sbjct: 353 EGGSLILLDAQTGQKTTLVSGLGQN 377 >gi|145630447|ref|ZP_01786228.1| translocation protein TolB precursor [Haemophilus influenzae R3021] gi|144984182|gb|EDJ91619.1| translocation protein TolB precursor [Haemophilus influenzae R3021] Length = 427 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEIRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|329122257|ref|ZP_08250845.1| translocation protein TolB [Haemophilus aegyptius ATCC 11116] gi|327473818|gb|EGF19235.1| translocation protein TolB [Haemophilus aegyptius ATCC 11116] Length = 427 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|229846469|ref|ZP_04466577.1| translocation protein TolB [Haemophilus influenzae 7P49H1] gi|229810562|gb|EEP46280.1| translocation protein TolB [Haemophilus influenzae 7P49H1] Length = 427 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLISADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|319775689|ref|YP_004138177.1| TolB protein [Haemophilus influenzae F3047] gi|319898096|ref|YP_004136293.1| tolb protein [Haemophilus influenzae F3031] gi|317433602|emb|CBY81986.1| TolB protein [Haemophilus influenzae F3031] gi|317450280|emb|CBY86496.1| TolB protein [Haemophilus influenzae F3047] Length = 427 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAVVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 228 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 229 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF- 350 N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMI 347 Query: 351 --------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 408 SLPGSDGQVKFPAWSP 423 >gi|284007876|emb|CBA73795.1| TolB protein [Arsenophonus nasoniae] Length = 355 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/326 (26%), Positives = 155/326 (47%), Gaps = 15/326 (4%) Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPASW-RKIAHTISD 160 W +LG +V G+V + + ++L DV + ++ + A W R AHTISD Sbjct: 16 WTALGINAVVVGQVQPAADGQYIISYQLVDVVNSPGAVLTQNQLKVAAKWLRYAAHTISD 75 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 +++ +TG +G F +RI +V ++ G L V D DG N ++ + L P +S Sbjct: 76 EVFAKLTGIRGAFRTRIAYVVKTN-GGKFPYELRVSDYDGYN-QFTVHRSPEPLMSPAWS 133 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + +K+AY T++ ++ T ++I +F AP FS +G + + K Sbjct: 134 ADGEKLAYVTFESGS--SALVIQTLATGEVRQIASFPRHNGAPTFSPDGTKLAFVLSKSG 191 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 ++++Y +DL S T ++T+ N ++ PD+ +++ SD+ G+ Q+Y + NG +R Sbjct: 192 SLNLYVMDLASGQTRQITDGRSNNTEPNWMPDNQTLIYTSDQAGRPQIYKLNINGGVPER 251 Query: 341 IS----QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 I+ Q+++AS SP G + S K I L + + P+ Sbjct: 252 ITWEGKQNQDASV-----SPDGKFMVMVNSSDGKQHIAKQDLATGNVEYLTDTFLDETPS 306 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSID 422 +P+G +I+S + T +L S D Sbjct: 307 IAPNGTMVIYSSSQGLGTVLQLVSTD 332 >gi|148827587|ref|YP_001292340.1| translocation protein TolB [Haemophilus influenzae PittGG] gi|166229980|sp|A5UGQ1|TOLB_HAEIG RecName: Full=Protein tolB; Flags: Precursor gi|148718829|gb|ABQ99956.1| hypothetical protein CGSHiGG_05070 [Haemophilus influenzae PittGG] Length = 427 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 171/377 (45%), Gaps = 49/377 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 111 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 112 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ + Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENK---KS 226 Query: 240 YLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 L+ ++ +++ +F+ AP FS +G R + +D ++IY + +LT Sbjct: 227 QLVVQDLNSGSRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLT 286 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEASYF 350 + N ++SPD + I+F SDR G Q+Y M ++G + +IS D + Sbjct: 287 SGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGNATAVGGRGSAQISADGKTLVM 346 Query: 351 ---------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-Q 382 P SP G +I ++ G + ++ DG + Sbjct: 347 INGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGRFK 406 Query: 383 ERLLVEDSNLQAPTWSP 399 L D ++ P WSP Sbjct: 407 ASLPGSDGQVKFPAWSP 423 >gi|190149576|ref|YP_001968101.1| protein tolB precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914707|gb|ACE60959.1| Protein tolB precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 311 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 9/237 (3%) Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQIIGKKFFSSPASW-RKIAHTI 158 Q W +G +V G+V G V ++L D + + ++ + F+ PA+ R+ AHT+ Sbjct: 32 QQWTDIGVDSVVVGQVTPTGGG-YNVAYQLVDTLSNPATVLAQGAFNVPAAQIRQGAHTV 90 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 SD +++ IT +G F ++I +V V G+ L V D DG N + S++ L P Sbjct: 91 SDQVFEKITQIRGAFRTKIAYV---VQRGVSSYELRVSDYDGYNAFTVVKSKEP-LMSPE 146 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ ++AY T++++ +V + D R + + + R AP FS +G R + + Sbjct: 147 WSPDGSRLAYVTFENKK-AQVVVHDLR-SGSRRVVAALRGHNGAPAFSPDGSRIAFASNQ 204 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D +DIY V +LT N S+SPD S I F SDR G Q+Y M S+G Sbjct: 205 DGELDIYVVGANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMGSSG 261 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +S +SPD S++ + + K Q+ V S +R+ P +SP G IAF Sbjct: 143 MSPEWSPDGSRLAYVTFENKKAQVVVHDLR-SGSRRVVAALRGHNGAPAFSPDGSRIAFA 201 Query: 365 KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + I V+ +G + +L N P+WSP G ++ F+ + G Sbjct: 202 SNQDGELDIYVVGANGGKPSKLTANAGNNTEPSWSPDGSTIYFTSDRAG 250 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERL 385 +L V +G + + + KE P WSP G +A+ F +K + V + GS+ + Sbjct: 121 ELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLAYVTFENKKAQVVVHDLRSGSRRVV 179 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQW 442 + AP +SP G + F+ +DG+ +Y + N G+ L ++P W Sbjct: 180 AALRGHNGAPAFSPDGSRIAFASNQDGEL--DIYVVGANGGKPSKLTANAGNNTEPSW 235 >gi|167626687|ref|YP_001677187.1| group A colicin translocation protein TolB [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596688|gb|ABZ86686.1| group A colicin translocation; TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 435 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 106/403 (26%), Positives = 189/403 (46%), Gaps = 39/403 (9%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ ++ DL + L DS K +I +IP W SL + +V + Sbjct: 45 VDQFPQQVNSIIVSDLNHNG--KLQGDDSIKYEINQSQNIP----WKSLKSDYVVLTKYT 98 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSR 176 K+ + VE +++ D I + + S A R +AH +++ +YQ +TGE+G F ++ Sbjct: 99 KDSNNSYTVEVQIYKRNDTSYIRSITYKNISTALVRPLAHKVANYVYQKLTGEQGFFLTK 158 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G I L + D DG N + D + P +S + + + Y++Y Sbjct: 159 LAYVQVSNPYARYGRIY-ELVISDYDGYNKHTVLRQSDNPIATPSWSNDGRYIVYSSYSG 217 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY +D + RI NF+ + +P FS NGK +++ K + +IY ++L + Sbjct: 218 GS-MGVYTLDIATGKV-TRISNFKGINSSPSFSPNGKEIALALSKGYSDQTNIYILNLAT 275 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-- 349 A +R+T IN + +SP+ IVF SDR+G+ +YV N R Q + S Sbjct: 276 KALKRIT-INGINTAPKFSPNGQSIVFTSDRDGRPNIYVAPVN----SRYPQSSKLSSRI 330 Query: 350 ---FDPVWSPQGDLIAF---TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 ++P ++P G I F ++ SG + A +GS + S+ +PT SP G Sbjct: 331 YQGYEPNYTPDGKDIVFMNQSRSSGTQIA-DFNLANGSVTNITNGKSD-SSPTVSPFGNM 388 Query: 404 LIF-SRKKDGDT--------GSKLYSIDLNGRNETLINTPAYA 437 + + S G + G +++D LI +P+++ Sbjct: 389 IAYISTNSRGYSSLDMVSLDGDNHFNVDTANNGNILIQSPSWS 431 >gi|319779142|ref|YP_004130055.1| tolB protein precursor [Taylorella equigenitalis MCE9] gi|317109166|gb|ADU91912.1| tolB protein precursor [Taylorella equigenitalis MCE9] Length = 415 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 171/357 (47%), Gaps = 46/357 (12%) Query: 62 GGKVSEVVSKDLQRSDVFNL-----ISQDSFKQKITNPDSIPRFQDWNSL-----GAQVL 111 G +++++V+KDL S FN+ IS+D + DW+ L GA + Sbjct: 56 GKQIADIVAKDLTNSGQFNVTRIASISKDPHDK-----------LDWDKLVDLSKGANI- 103 Query: 112 VTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 VTG + KD V +R D +K + ++ S S R IAH ISD Y+ G KG Sbjct: 104 VTGF---DNKDH--VHYRFLDPIQQK--VREEARVSNPSQRAIAHKISDYAYEQSIGLKG 156 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F+++I FVS SL + D DG N + L + P +SP+ K+AY ++ Sbjct: 157 AFSTKIAFVS--------GRSLYISDYDGHNAKVLV--SGATIISPAWSPDGSKIAYVSF 206 Query: 232 DD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVD 288 + + I+ V + T + R P + +F+ AP +S +G +++ +D DIY S D Sbjct: 207 ESGKPIVYVQQLSTGV-RIP--VASFKGNNSAPAWSPSGVSLAVALSRDALSDIYLVSSD 263 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + + L+++ I + P++S +VF SDR G Q+Y N RI+ + + Sbjct: 264 GTTKSPRSLSSSPEIETEPFFFPNNSGLVFVSDRGGSPQIYKSGLNNGPASRITFNGSQN 323 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 P SP + + FT K+ I +M ER++ + +PT+SP+G +++ Sbjct: 324 -LSPRISPDSNSLVFTSLRKGKYVIALMNLASGDERIISSGPDDLSPTFSPNGMNVM 379 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 8/130 (6%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S++I F S R LY+ +G + K + A+ P WSP G IA+ F K Sbjct: 159 STKIAFVSGRS----LYISDYDGHNAKVLVSG--ATIISPAWSPDGSKIAYVSFESGKPI 212 Query: 373 IGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETL 430 + V + G + + N AP WSPSG SL + +D + L S D ++ +L Sbjct: 213 VYVQQLSTGVRIPVASFKGNNSAPAWSPSGVSLAVALSRDALSDIYLVSSDGTTKSPRSL 272 Query: 431 INTPAYASDP 440 ++P ++P Sbjct: 273 SSSPEIETEP 282 >gi|88800185|ref|ZP_01115753.1| TolB [Reinekea sp. MED297] gi|88777031|gb|EAR08238.1| TolB [Reinekea sp. MED297] Length = 434 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 102/415 (24%), Positives = 190/415 (45%), Gaps = 18/415 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRS 76 L+ ++ +P HA + + + IA F L +V +++ +L R+ Sbjct: 9 LMTAVLALCWPLLSHADLDIVVTKGYDTQTKIAVVPFFWEGSQALPERVDNLITNNLVRT 68 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F+ ++ + + D + F+DW L + L+ G + G ++ E L+DV Sbjct: 69 GRFDPLAPAKMLSQPYSEDGV-FFRDWRLLNQEFLIIGHLKPYGDAKVEAEIALYDVVKN 127 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN-SLCV 195 ++++ R AH++SD Y+ +TG +G F++RI FV+ +VS + L + Sbjct: 128 RRVVRVTQVVGVHQLRDFAHSLSDLFYERMTGVRGIFSTRIAFVTRKIVSQQQYDYRLQI 187 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG R + S + I+ +S +VA+A D ++++ D R + I + Sbjct: 188 ADADGQRARTIYRSNEPII-SVAWSQKGDRVAFAN-KVGDRWKIFIQDLRSGQV-NSISD 244 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 R AP FS +G+ + +IY + Q+ +ERLT +I+ S+S DS Sbjct: 245 VRGYTSAPSFSPDGRYLAYVSSYRNSPEIYLYEFQTGKSERLTRNSYIDTEPSFSADSKS 304 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 IVF S++ G Q+Y +R+ +Q+ A Y S G + F +F Sbjct: 305 IVFTSEKGGSPQIYRYDLATKRTERLTFEGTQNLRARY-----SSDGKYLVFVHQIDGRF 359 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I M R+L E + ++P+ +P+G L+++ ++ G+ G L + L+G+ Sbjct: 360 HIASMDLATRDIRVLTETNLDESPSIAPNGTMLVYATQR-GNQGV-LAWVSLDGQ 412 >gi|309750199|gb|ADO80183.1| Outer membrane integrity protein TolB [Haemophilus influenzae R2866] Length = 427 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 171/379 (45%), Gaps = 53/379 (13%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGKD 122 +S++V+ DL+ S FN I+ Q +P S+ + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQ---HPTSVAEVNPEAWSNIGIDAIVIGQVVPSG-N 109 Query: 123 RLRVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRI 177 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI Sbjct: 110 GYSITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRI 169 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ Sbjct: 170 AYVVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENK--- 224 Query: 238 RVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + L+ ++ +++ +F+ AP FS +G R + +D ++IY + + Sbjct: 225 KSQLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQ 284 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------QKRISQDKEAS 348 LT+ N ++SPD + I+F SDR G Q+Y M ++G +IS D + Sbjct: 285 LTSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTL 344 Query: 349 YF---------------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 P SP G +I ++ G + ++ DG Sbjct: 345 VMINGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGR 404 Query: 382 -QERLLVEDSNLQAPTWSP 399 + L D ++ P WSP Sbjct: 405 FKASLPGSDGQVKFPAWSP 423 >gi|15602832|ref|NP_245904.1| translocation protein TolB [Pasteurella multocida subsp. multocida str. Pm70] gi|32699718|sp|Q9CM71|TOLB_PASMU RecName: Full=Protein tolB; Flags: Precursor gi|12721292|gb|AAK03051.1| TolB [Pasteurella multocida subsp. multocida str. Pm70] Length = 432 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 49/370 (13%) Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I + Q T+ + + W +LG +V G V + ++L D Sbjct: 65 LRHSGKFNPIPVNRMPQHPTSVSEV-NPEAWAALGIDAVVVGHVTPA-NGSFNIAYQLVD 122 Query: 133 VKDRKQIIGKKF----FSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 G ++ A W R AHT+SD++++ +TG +G F +RI ++ + G Sbjct: 123 TIGATGTAGTVLTQNQYTVTAKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAYIVQKH-GG 181 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q L P +S + +K+AY +++++ ++ + D Sbjct: 182 SQPYEVRVSDYDGFN-QFVVNRSAQPLMSPAWSHDGKKLAYVSFENKK-SQLVVQDLG-S 238 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F AP FS +G R + KD ++IY ++L S +LT+ N Sbjct: 239 GARKVVASFNGHNGAPAFSPDGSRLAFASSKDGVLNIYVMNLGSGQISQLTSGTGNNTEP 298 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK---------------------- 345 S+SPD IVF SDR G Q+Y M ++G +S Sbjct: 299 SWSPDGQTIVFTSDRSGSPQVYQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRDNI 358 Query: 346 -------------EASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVED 389 +++ D P SP G +I ++ G + ++ DG + RL D Sbjct: 359 VKKDLASGSTEVLSSTFLDENPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGND 418 Query: 390 SNLQAPTWSP 399 ++ P WSP Sbjct: 419 GQVKFPAWSP 428 >gi|152979449|ref|YP_001345078.1| translocation protein TolB [Actinobacillus succinogenes 130Z] gi|171704378|sp|A6VQ96|TOLB_ACTSZ RecName: Full=Protein tolB; Flags: Precursor gi|150841172|gb|ABR75143.1| Tol-Pal system beta propeller repeat TolB [Actinobacillus succinogenes 130Z] Length = 427 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 172/392 (43%), Gaps = 51/392 (13%) Query: 50 IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 IA F S + ++E+++ DL+ S FN I + Q+ + + W SLG Sbjct: 41 IAVVPFKSNGSVPADIAEIITADLRNSGKFNPIPVNQMPQQPGSASEVTP-DAWASLGID 99 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQ 164 +V G+V G + ++ ++L D + ++ + + W R AH +SD++++ Sbjct: 100 AVVVGQVTASG-NGYQIAYQLVDTVGASGNAGAVLAQNSLTVQPKWIRWGAHQVSDEVFE 158 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +TG KG F +RI +V + + L + D DG N +++ Q + P +SP+ Q Sbjct: 159 KMTGIKGAFRTRIAYVVQRNAG---SHELRIADYDGFN-QFVVTRSSQPIMSPAWSPDGQ 214 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 ++AY ++++ V R K + FR AP FS +G R + +D ++I Sbjct: 215 RLAYVSFENRKSQLVVHNLGSGQR--KVVAAFRGHNGAPAFSPDGSRLAFANNQDGLLNI 272 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN---------- 334 Y ++ +LT N S++ D +I+F SDR G Q+Y M S+ Sbjct: 273 YVMNSNGGHPTKLTGGAGNNTEPSWTQD-GRILFTSDRSGSPQVYSMSSSGGGATLIGGG 331 Query: 335 -------GSDQKRI-----------------SQDKEASYFD--PVWSPQGDLIAFTKFSG 368 SD K + S+ +++ D P SP G +I ++ G Sbjct: 332 RSYSGQMSSDGKTLVMISGDNVVKYDTTTGTSEVLSSTFLDESPSISPNGIMIIYSSTQG 391 Query: 369 EKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + ++ DG + RL D ++ P WSP Sbjct: 392 LGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 423 >gi|149910559|ref|ZP_01899198.1| Periplasmic component of the Tol biopolymer transport system [Moritella sp. PE36] gi|149806402|gb|EDM66375.1| Periplasmic component of the Tol biopolymer transport system [Moritella sp. PE36] Length = 441 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 105/443 (23%), Positives = 204/443 (46%), Gaps = 42/443 (9%) Query: 33 HAFVKV----ATNSANYSPVSIAFTKFVSIDELGGKVSE---VVSKDLQRSDVFNLISQD 85 HA +++ TNSA PV++ K++ + +++ V++ DL+ S F+ + + Sbjct: 7 HAALEIVITEGTNSAR--PVAVVPFKWLGVQPKPKDMTDFASVIADDLRNSGRFSPLERS 64 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV------------ 133 Q ++ + W G + +V G + RL++ F+L +V Sbjct: 65 LMPQTPATESAV-NYAAWKETGVEAIVIGTIKPLQDGRLQIHFQLINVLSGFKNQTPQKI 123 Query: 134 -------KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 D ++ K FS+ R I+H +SD I++++TG +G F +RI +V+ + Sbjct: 124 DEQLVINNDHIKLNLKGNFSTRRP-RHISHRLSDYIFENLTGTRGAFLTRIAYVAINY-D 181 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L + D DG N L S + ++ P + P +K+AY + +D+ +++ D + Sbjct: 182 DKYPFKLLISDYDGMNQHVLFRSTEPVM-SPSWDPTGKKLAYMSMEDKK-HEIWIYDL-V 238 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + I ++ + P FS +G + + + K D+Y DL++ +RLT I+ Sbjct: 239 TQKRELIEPYKGSNIFPVFSPDGSKLSMILSKSGQADVYVYDLKTKKLDRLTKNRGIDTE 298 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A+++PD IVF S+R G+ Q+Y + KR++ + A+ +P SP G + Sbjct: 299 ATWAPDGKSIVFTSERGGRPQIYQINLESKKIKRLTFEGNAN-LNPSISPDGKNLVMVSL 357 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 K+++ + L ++P+ +P+G +I+S G L S+D GR Sbjct: 358 QKGKYSVTKQDLSDGYVQKLTNGRLDKSPSIAPNGSMVIYSTVVKGKQVLSLVSMD--GR 415 Query: 427 NETLINTPAYASD---PQWVGFM 446 + ++ PA + P W F+ Sbjct: 416 FKAVL--PASDGEVKAPAWSPFL 436 >gi|322435206|ref|YP_004217418.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] gi|321162933|gb|ADW68638.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] Length = 449 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 103/405 (25%), Positives = 193/405 (47%), Gaps = 36/405 (8%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS--LGAQVLVTGRV 116 D L V+ DL + +F+++S+ Q + W+ + A ++ G + Sbjct: 57 DALRHTFDTVLYDDLHNAGIFDMVSKSMAPQATPGSPTEINLPQWSGAPVNASMVAFGAL 116 Query: 117 IKEGKDRLRVEFRLWDVKDRK--QIIGKKFF--SSPASWRKIAHTISDDIYQSITG-EKG 171 G RL V L+DVK+ + Q++ K++ +S + R+IAH +D+I ++G G Sbjct: 117 GVTGT-RLAVNGFLFDVKNTQFPQVLAKQYGEEASEDAARQIAHRFADEIILRLSGGTNG 175 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 ++I FV + G K + MD DG+N +T S + PR SP+ ++A+++ Sbjct: 176 IAETKIYFVH---LDGGNKE-IWEMDYDGSNQHPVT-SLGSVSVSPRVSPDNTRLAFSSL 230 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +D ++ + ++R ++P +SS+GK+ S + +IY D Sbjct: 231 G-KDGFQIKMFSLLLNRMVSFPAGGGGTNVSPAWSSDGKQLAFSSSRTGDNEIYIADANG 289 Query: 292 NATERLTNTLFINISASYSPDS-SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 ++ R+T+ ++S ++P S +QI + S R G QLY M+++GS R++ A+ Sbjct: 290 GSSRRITSFAGPDVSPVFNPRSGAQIAWISGRSGLPQLYTMETDGSGVTRLTDGGYAT-- 347 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN------------LQAPTWS 398 P WSP G +AF K+ G G Q+ ++E ++ P+WS Sbjct: 348 SPSWSPNGQFLAFAW--NRKYGPGA---PGGQDIYVMEIASKRWIQLTHDMGPCDFPSWS 402 Query: 399 PSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 P GR ++F+ +G + SK++++ +G + + T A + P W Sbjct: 403 PDGRHIVFANSPNGRASSSKIFTMLADGTDRHAL-TGAGSDMPNW 446 >gi|332974349|gb|EGK11279.1| WD40 domain protein [Psychrobacter sp. 1501(2011)] Length = 443 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 111/432 (25%), Positives = 184/432 (42%), Gaps = 24/432 (5%) Query: 18 CLLLVLIGGFFPTSIHA-----FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 C LL G S HA + + +AF F +S ++ KD Sbjct: 26 CALLASAGLLVGISAHAEEDYDLELTISKKGEVNQNQVAFVPFAGDS----GISSIIQKD 81 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ + SQ Q + D W LG +V G G + + F + + Sbjct: 82 LEAMP-LRVTSQGLIGQPHSRDDLAATLPAWQQLGIPYMVIGSSQNVGGN-ASITFEVIE 139 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + I G + ++ A + A S IY+ ITG+K D N+R+++V E +S Sbjct: 140 VAKGRIIKGTQTVTA-ADSKTAARKASSRIYELITGKKLDLNARLIYVEEKGSGKSKTSS 198 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++D DG+N R L+ D ++ P SP+ + VAY+ ++ ++ D + + R Sbjct: 199 LVLIDADGSNKRLLSQVIDATIYSPAVSPDGRYVAYSVQLKDNSANLWKYDLKTSQL-TR 257 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + + L P FS +G + L S + DIY V+ E + + ++ SY+P+ Sbjct: 258 LVDMKGSSLRPSFSYDGSKILFSSTVNGDADIYRVNSTGGKPELVMAGPYDQVTPSYAPN 317 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 S V+ SD + + + N S +IS+ A+ +P +SP G I F SG Sbjct: 318 GS-FVYASDHASPNRPNIYRYNFSGSPVQISRGGYAT--NPSYSPDGTKIGF--LSGRSA 372 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 AI M +GS +AP +SP+G +++S+ G L L+G + Sbjct: 373 AI--MSNNGSIIANFGATGLDEAPRFSPTGERVVYSQ---GAKKGNLVIRYLDGGKVITL 427 Query: 432 NTPAYASDPQWV 443 T A P WV Sbjct: 428 PTDGIAKSPTWV 439 >gi|320107208|ref|YP_004182798.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319925729|gb|ADV82804.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 444 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 181/389 (46%), Gaps = 43/389 (11%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDW--NSLGAQVLVTGRV-IKEGKDRL 124 V+ DL ++ +F+L+S+ Q S W N A ++ G + IK G RL Sbjct: 64 VLYADLAQAGIFDLVSKSLLPQLTPGAPSEMNVTQWSANPTNAAMVAFGSLGIKSG--RL 121 Query: 125 RVEFRLWDVKDRK--QIIGKKFF--SSPASWRKIAHTISDDIYQSITGE-KGDFNSRILF 179 V L+D K+ + Q++GK++ ++ S R+IAH +D+I + G G ++I++ Sbjct: 122 IVNGWLFDAKNTQYPQVLGKQYAEDANDNSAREIAHKFADEIILRLGGGIPGIAETKIVY 181 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LR 238 V G + +MD DGAN +T + PR SP+ ++A+++ E +R Sbjct: 182 VH----GGSGSKEIWMMDYDGANPHPVT-HLGTVSLSPRISPDNSRIAFSSLGREGFQIR 236 Query: 239 VY-LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V+ L+ R+ P G L+P +S+NG + S + +I+ D + R+ Sbjct: 237 VFSLLLNRMIAFPAAAGTN----LSPAWSANGAQIAYSSSRSGDPEIWIADSNGSGPRRV 292 Query: 298 TNTLFINISASYSPDS-SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 T+ ++S ++P + SQI + S R G QLY M ++G+ R++ A+ P WSP Sbjct: 293 TSFRGPDVSPVWNPKTGSQIAWISGRTGLPQLYTMDADGAGVTRMTDGGYAT--SPSWSP 350 Query: 357 QGDLIAFTKFSGEKFAIG--------VMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFS 407 G + F K+ G VM+ + L D+ P+WSP GR ++++ Sbjct: 351 NGQFLTFAW--DRKYGPGAPGGQDIYVMEIASKRWIQLTHDTGRCDFPSWSPDGRHIVYA 408 Query: 408 RKKDG--------DTGSKLYSIDLNGRNE 428 G G++ + + NG N+ Sbjct: 409 SNAGGRWEIWTMLADGTQRHKLSTNGAND 437 >gi|325579033|ref|ZP_08148989.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus parainfluenzae ATCC 33392] gi|325159268|gb|EGC71402.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus parainfluenzae ATCC 33392] Length = 427 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 165/376 (43%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++V+ DL+ S FN I Q+ T + + + W +LG +V G+V G Sbjct: 54 IGQIVADDLRNSGKFNPIPVSQMPQQPTTAAEV-KPEAWTALGIDAVVVGQVTSTGSG-Y 111 Query: 125 RVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D ++ + ++ W R AHT+SD++++ +TG +G F +RI + Sbjct: 112 NISYQLVDTVGASGTPGAVLAQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ +++AY +++++ V Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSSQPIMSPAWSPDGKRLAYVSFENKKSQLV 229 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 R K + +F AP FS +G + + +D ++IY + +LT Sbjct: 230 VQDLGSGSR--KVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVMGSNGGTPTQLTR 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG---------------SDQKR---- 340 N S+SPD S I+F SDR G Q+Y M ++G SD K Sbjct: 288 GAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMSASGGGASPVGGRGSAQISSDGKTLVMI 347 Query: 341 ------ISQDKEASYFD----------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 + QD + + P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTSGSSEVLSTSFLGESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L + ++ P WSP Sbjct: 408 SLPGSNGQVKFPAWSP 423 >gi|301155738|emb|CBW15206.1| periplasmic protein [Haemophilus parainfluenzae T3T1] Length = 427 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 47/376 (12%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++V+ DL+ S FN I Q+ T + + + W +LG +V G+V G Sbjct: 54 IGQIVADDLRNSGKFNPIPVSQMPQQPTTAAEV-KPEAWTALGIDAVVVGQVTSTGSG-Y 111 Query: 125 RVEFRLWDV----KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D ++ + ++ W R AHT+SD++++ +TG +G F +RI + Sbjct: 112 NISYQLVDTVGASGTPGAVLAQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAY 171 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ +++AY +++++ V Sbjct: 172 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSSQPIMSPAWSPDGKRLAYVSFENKKSQLV 229 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 R K + +F AP FS +G + + +D ++IY + +LT+ Sbjct: 230 VQDLGSGSR--KVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVMSSNGGKPTQLTS 287 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS--------DQKRISQDKE----- 346 N S+SPD S I+F SDR G Q+Y M ++G +IS D + Sbjct: 288 GAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMSASGGGASPVGGRGSAQISSDGKTLVMI 347 Query: 347 --------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QE 383 S+ P SP G +I ++ G + ++ DG + Sbjct: 348 NGNNNVVKQDLTTGSSEVLSTSFLGESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 407 Query: 384 RLLVEDSNLQAPTWSP 399 L + ++ P WSP Sbjct: 408 SLPGSNGQVKFPAWSP 423 >gi|226227348|ref|YP_002761454.1| hypothetical protein GAU_1942 [Gemmatimonas aurantiaca T-27] gi|226090539|dbj|BAH38984.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 420 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 168/388 (43%), Gaps = 44/388 (11%) Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ +VS+DL SD F ++S S + + + LG +V ++ G Sbjct: 48 GDSIARMVSRDLDFSDRFTIVSSSSAPAV----NGAINYALFTKLGVDGIVQATLLPSGW 103 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSP-----ASWRKIAHTISDDIYQSITGEKGDFNSR 176 V L DV K + + F P A+WR H +SD + + ITG +G +R Sbjct: 104 ----VRVALHDVG-LKNVKNSRDFPLPTPALSATWRLAVHGVSDGVEEWITGARGIAQTR 158 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + F V +D DGAN+ +TPS P++ P+ + + Y+ D Sbjct: 159 VAFTRGGRV--------WTIDSDGANVTAVTPSG----MSPQWLPSGRGIVYSVLDG--- 203 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +R +M T + +R+ + P S +G+ + + D D+Y + Sbjct: 204 VRNPIMLTDLSTGAQRVLASAQGVEHTTPIVSPDGRTVVYARGSDTGTDLYQQSMDGGTP 263 Query: 295 ERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-- 351 R+T + AS+SPD ++ F SDR G ++Y+ +G++ + ++ A++ D Sbjct: 264 RRITVGRGRASAQASFSPDGQRLAFMSDRSGHPEVYISDLDGTNTELLT---AAAFGDRD 320 Query: 352 ----PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 P WSP G L+AF +G F I + + + D P+W+P R ++F+ Sbjct: 321 YRAGPDWSPDGRLVAFQSRNGGTFQIMTINLRDQSVKQVTNDGRNDDPSWAPDSRHVVFT 380 Query: 408 RKKDGDTGSKLYSIDL-NGRNETLINTP 434 + G +L+ +D GR L P Sbjct: 381 STRSGT--RQLWIVDTETGRTRQLTFGP 406 >gi|294056510|ref|YP_003550168.1| WD40 domain protein beta Propeller [Coraliomargarita akajimensis DSM 45221] gi|293615843|gb|ADE55998.1| WD40 domain protein beta Propeller [Coraliomargarita akajimensis DSM 45221] Length = 390 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 11/241 (4%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD-TRIDRAPKRIGNFRSM 259 N++ LT R ++ P +SPN +K+ Y TY +Y+MD + R P I F+ Sbjct: 148 GNVKSLTSDR-ALVTGPSWSPNGRKLVYTTYKG-GFPDIYMMDFDQRRRVP--IATFKGT 203 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 RFS +G R +++ +I+ D Q RLT + S S+SPD ++VF Sbjct: 204 NTGARFSPDGSRIAMTLSSTGNSEIWVTDQQGKNGRRLTKNKSLEASPSWSPDGRRLVFT 263 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ-GDLIAFTKFSGEKFAIGVM-- 376 SD GK QLY + +NG +R+ + +P W+PQ G IAFT G F + V Sbjct: 264 SDSFGKPQLYEISANGGPMRRVPTNVSRYCAEPAWNPQKGHQIAFTAAVGGGFQVFVYDS 323 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 ++ GS + V ++ P W GR LIF+++ G +L +D + + ++TP + Sbjct: 324 QQGGSTQVTSVAGDAIE-PCWLNDGRHLIFTQRSGGKM--RLMLVDTESKKVSSLHTPNF 380 Query: 437 A 437 Sbjct: 381 G 381 >gi|241667262|ref|ZP_04754840.1| group A colicin translocation; TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 434 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 188/403 (46%), Gaps = 39/403 (9%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ ++ DL + L DS K +I +IP W SL + +V + Sbjct: 44 VDQFPQQVNSIIVSDLNHNG--KLQGDDSIKYEINQSQNIP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSR 176 K+ + +E +++ D I + + S R +AH +++ +YQ +TGE+G F ++ Sbjct: 98 KDSNNSYTIEVQIYKRNDTSYIRSITYKNISTTLVRPLAHKVANYVYQKLTGEQGFFLTK 157 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G I L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVQVSNPYARYGRIY-ELVISDYDGYNKHTVLRQSDNPIATPSWSNDGRYIVYSSYSG 216 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI NF+ + +P FS NGK +++ K + +IY ++L + Sbjct: 217 GS-MGVYTLEIATGKV-TRISNFKGINSSPSFSPNGKEIALALSKGYSDQTNIYILNLAT 274 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-- 349 A +R+T IN + +SP+ IVF SDR+G+ +YV N R Q + S Sbjct: 275 KALKRIT-INGINTAPKFSPNGQSIVFTSDRDGRPNIYVAPVN----SRYPQSSKLSSRI 329 Query: 350 ---FDPVWSPQGDLIAF---TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 ++P ++P G I F ++ SG + A +GS + S+ +PT SP G Sbjct: 330 YQGYEPNYTPDGKDIVFMNQSRSSGTQIA-DFNLANGSVTNITNGKSD-SSPTVSPFGNM 387 Query: 404 LIF-SRKKDGDT--------GSKLYSIDLNGRNETLINTPAYA 437 + + S G + G +++D LI +P+++ Sbjct: 388 IAYISTNSRGYSSLDMVSLDGDNHFNVDTANNGNILIQSPSWS 430 >gi|254875813|ref|ZP_05248523.1| TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841834|gb|EET20248.1| TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 438 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 188/403 (46%), Gaps = 39/403 (9%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ ++ DL + L DS K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSIIVSDLNHNG--KLQGDDSIKYEINQSQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSR 176 K+ + +E +++ D I + + S R +AH +++ +YQ +TGE+G F ++ Sbjct: 102 KDSNNSYTIEVQIYKRNDTSYIRSITYKNISTTLVRPLAHKVANYVYQKLTGEQGFFLTK 161 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G I L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVQVSNPYARYGRIY-ELVISDYDGYNKHTVLRQSDNPIATPSWSNDGRYIVYSSYSG 220 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI NF+ + +P FS NGK +++ K + +IY ++L + Sbjct: 221 GS-MGVYTLEIATGKV-TRISNFKGINSSPSFSPNGKEIALALSKGYSDQTNIYILNLAT 278 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-- 349 A +R+T IN + +SP+ IVF SDR+G+ +YV N R Q + S Sbjct: 279 KALKRIT-INGINTAPKFSPNGQSIVFTSDRDGRPNIYVAPVN----SRYPQSSKLSSRI 333 Query: 350 ---FDPVWSPQGDLIAF---TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 ++P ++P G I F ++ SG + A +GS + S+ +PT SP G Sbjct: 334 YQGYEPNYTPDGKDIVFMNQSRSSGTQIA-DFNLANGSVTNITNGKSD-SSPTVSPFGNM 391 Query: 404 LIF-SRKKDGDT--------GSKLYSIDLNGRNETLINTPAYA 437 + + S G + G +++D LI +P+++ Sbjct: 392 IAYISTNSRGYSSLDMVSLDGDNHFNVDTANNGNILIQSPSWS 434 >gi|160872498|ref|ZP_02062630.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsiella grylli] gi|159121297|gb|EDP46635.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsiella grylli] Length = 451 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 187/395 (47%), Gaps = 28/395 (7%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKD 122 +S+V+ DL S F + + +Q + P ++ + W + +V G++ G Sbjct: 70 ISQVIESDLNHSGQFKVTIAN--RQALPQPYTLDKISIPYWRAQHIDDVVRGKITSMGHG 127 Query: 123 RLRVEFRLWDV-KDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 R RV + V + RKQI+ + R H +SD IY+ +TG +G F++RI ++ Sbjct: 128 RYRVYMDVVHVAQGRKQILTHTELTVRDTQLRAFGHHLSDLIYEKLTGVRGIFSTRIAYI 187 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL-RV 239 + L + D DG N + L S I+ P +S + +++AY ++ E I+ R+ Sbjct: 188 LVTRQKNHRVYRLQIADMDGHNAKSLLTSTQPIM-SPSWSHDGKRIAYVSF--EKIMPRI 244 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLT 298 Y+ + + I ++ + AP +S + K+ +++ K+ A IY ++L++ +++ Sbjct: 245 YIQTIATGQR-QVISDYPGINGAPAWSPDDKKLALALSKNSAAPKIYFINLENKRLSQVS 303 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVW 354 I+ ++S D ++F SDR G Q+Y + NG +RI S + ASY Sbjct: 304 FGFSIDTEPTWSQDGKSLLFTSDRGGGPQIYQINLNGKQLQRITFDGSYNARASY----- 358 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G +I + I V +D + L V S +A P++SP+G+ ++F K D Sbjct: 359 SPDGKMIVVLNRDQGMYNIAV--QDLEDDTLFSVTHSGYEASPSFSPNGQMILFESKPDK 416 Query: 413 DTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFM 446 + S+D GR + TP DP W F+ Sbjct: 417 RGLLGMASVD--GRINCRLPTPEGDVQDPVWSPFL 449 >gi|328675514|gb|AEB28189.1| tolB protein precursor [Francisella cf. novicida 3523] Length = 435 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 199/441 (45%), Gaps = 38/441 (8%) Query: 22 VLIGGFFPTSIHA-FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 VLI F +S++A V T P+ + V +D+ +V+ V+ DL + Sbjct: 8 VLIFVFLISSLYADLVAEVTTGVIQKPLVTVVSDNV-VDQFPQQVNSVIVADLNHNA--K 64 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 L D+ K +I +IP W SL + +V + K + VE ++ D + Sbjct: 65 LQGNDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTKNSYNNYTVEVQILKRNDTSYLQ 120 Query: 141 GKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSES---VVSGIIKNSLCVM 196 + + S R +AH IS+ +Y +TGE+G F S++ +V S G + L + Sbjct: 121 AITYKNINISLMRTLAHKISNYVYHKLTGEQGFFLSKLAYVKVSNPYARYGRLY-ELIIS 179 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + D + P +S + + + Y++Y + VY ++ + RI N+ Sbjct: 180 DYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSGGS-MGVYTLEIATGKV-TRITNY 237 Query: 257 RSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + + +P FS +GK +++ K + +IY ++L + A +R+T IN + +SP+ Sbjct: 238 KGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRIT-INGINTAPKFSPNGQ 296 Query: 315 QIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAF----TKFSGE 369 IVF SDREG+ +YV N Q I K ++P ++P G I F ++ SG Sbjct: 297 SIVFTSDREGRPNIYVASVNSKYPQSSILSTKIYQAYEPNYTPDGKNIVFMNQSSRTSGT 356 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS----IDLNG 425 + A +GS + S+ +PT SP G + + T ++ YS + L+G Sbjct: 357 QIA-DFNLANGSVTNITNGKSD-SSPTVSPYGDMIAYI-----STNTRGYSSLDMVSLDG 409 Query: 426 RN----ETLINTPAYASDPQW 442 N ET N P W Sbjct: 410 DNHFNIETANNGNILIQSPSW 430 >gi|261414610|ref|YP_003248293.1| TolB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371066|gb|ACX73811.1| TolB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325965|gb|ADL25166.1| tol-pal system beta propeller repeat protein TolB [Fibrobacter succinogenes subsp. succinogenes S85] Length = 424 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 161/346 (46%), Gaps = 22/346 (6%) Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 A+ VTG K +++++ L+ + + ++G+ + P R+ H+ D + + Sbjct: 90 ARQYVTGTATKLSNGKIKLDCYLYAAETKDVLLGESYTVKPYDVRQAVHSFFDKVVYRLF 149 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ-ILFEPRFSPNQQKV 226 GE+G ++++ +VS+ + G+ + + D DG + R +T RD I P + + + Sbjct: 150 GERGVASTKLAYVSK--IDGV--KQVVISDYDGFSRRQIT--RDSSINMMPVWQKGNKGL 203 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y + + R L + +P + L SV + ++Y Sbjct: 204 VYVNFRKQ---RPNLYAITFGGKETPLFTQFKQTFSPAVNPKTGELLFSVTEGAKTELYR 260 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---- 342 D+++ + ++ + +S S+SP +S+++F SDR G Q+Y + +G+D +RI+ Sbjct: 261 GDMKTGSAQKFLHLKSNQVSPSWSPFASEVLFTSDRGGSPQVYAVGKDGTDVRRITYMGH 320 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSG 401 ++ AS WSP+GD I +T K I DG+ L ++ N + PTWSP G Sbjct: 321 YNERAS-----WSPEGDRIVYTSMDDGKMNIYTCALDGTDIIQLTSNAGNNEHPTWSPDG 375 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + F+ + G+ ++Y + +G T I + + P W F D Sbjct: 376 KLIAFASDRGGN--YQIYIMRKDGSGVTRITNGSENTSPTWSWFFD 419 >gi|256823065|ref|YP_003147028.1| Tol-Pal system beta propeller repeat-containing protein TolB [Kangiella koreensis DSM 16069] gi|256796604|gb|ACV27260.1| Tol-Pal system beta propeller repeat protein TolB [Kangiella koreensis DSM 16069] Length = 454 Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 103/431 (23%), Positives = 193/431 (44%), Gaps = 45/431 (10%) Query: 47 PVSIAFTKFVSIDELGGK----VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD 102 P+++ KF S + G+ +++++ DL+RS FN Q + D + ++ Sbjct: 37 PIAVVPFKFESESAVQGQPPFDFAKIIADDLRRSGKFNPTEISKLPQHPYSIDQV-NLEE 95 Query: 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS-----PAS------- 150 W LG +V G V + V + L D + K I P+S Sbjct: 96 WRKLGVDGVVYGTVSQTASGNYMVSYDLIDPFNDKAIFSADIEDGSYPLIPSSSHLMVLK 155 Query: 151 --------WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 +R AH +D+IY+++TGE+G F ++I +V E + L V D DG N Sbjct: 156 TKVVDNDNFRWGAHIAADEIYEALTGERGAFATQIAYV-EVNRNDPRPYQLFVADSDGFN 214 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMIL 261 + + SR I+ P +SP+ +++Y T+++ R ++ I + I +++ Sbjct: 215 GKRIFASRSPIM-SPTWSPDSSQLSYVTFENG---RSEIVIQDIASGQREIVASYKGFNS 270 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP +S +G + ++ + KD ++Y ++L + +RLT I+ S++PD ++F SD Sbjct: 271 APAWSPDGSKMVVVLSKDGNPELYLLELATKQLQRLTRHYAIDTEPSWAPDGKSLIFTSD 330 Query: 322 REGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 R G+ Q+Y ++ R++ + A + +P G I + + I Sbjct: 331 RGGRPQIYRIRLADKKVDRVTFEGIHNAGAEF-----TPDGKSIVMVHQANGSYHIAAQD 385 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS-IDLNGR-NETLINTPA 435 Q +L + + ++ + +P+G +IFS D G K+ S + ++GR L T Sbjct: 386 LVTGQLTVLTKTTLDESLSIAPNGSMIIFSTV---DGGQKVLSAVSMDGRFKARLPATVG 442 Query: 436 YASDPQWVGFM 446 P W F+ Sbjct: 443 EVKAPAWSPFI 453 >gi|289804344|ref|ZP_06534973.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 285 Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 47/287 (16%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Q L Sbjct: 1 HTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLM 58 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ K+AY T+ E ++ T + A +++ +F AP FS +G + + Sbjct: 59 SPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFA 116 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M NG Sbjct: 117 LSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNING 176 Query: 336 SDQKRI----SQDKEA------------------------------------SYFD--PV 353 +RI SQ+++A ++ D P Sbjct: 177 GAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPS 236 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 237 LAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 283 >gi|168699850|ref|ZP_02732127.1| WD40 domain protein beta Propeller [Gemmata obscuriglobus UQM 2246] Length = 294 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 18/243 (7%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K +L +M G ++ L P + F+ +SP+ ++ Y YD + L RID Sbjct: 60 KMALWIMPAAGGEMKRLLPGHTEPHFDGHYSPDGTRIVY-VYDKLEGTDGKL---RIDVC 115 Query: 250 PKRIGNFRSMIL------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + +++I +PRFS +GK L +++ D+Y+V RLTN Sbjct: 116 AADGSDNQTLIPHKAFEESPRFSPDGKTVLWVSTRNKNPDLYAVTAGGKGERRLTNDPAY 175 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLI 361 ++ ++SPD ++ F S R G+++++VM ++G+ ++++ + + D PVW P G+ I Sbjct: 176 DLHPAWSPDGKRVAFASGRSGRQKIHVMSADGTGVQKLT---DGEFLDSWPVWHPDGERI 232 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 AF + I +M DG R L + +P W+P G+ L F + G GS +Y Sbjct: 233 AFASNRSGNYDIWLMTADGKALRNLTGHKAQDTSPAWAPDGKKLAFVSTRGG--GSDIYV 290 Query: 421 IDL 423 +D+ Sbjct: 291 LDV 293 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 NA RLT + +SPD ++ EGK L++M + G + KR+ +FD Sbjct: 27 NAPVRLTKDGSFKQNVQWSPDGKTLLLTRIHEGKMALWIMPAAGGEMKRLLPGHTEPHFD 86 Query: 352 PVWSPQGDLIAFT--KFSGE--KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIF 406 +SP G I + K G K I V DGS + L+ ++P +SP G+++++ Sbjct: 87 GHYSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHKAFEESPRFSPDGKTVLW 146 Query: 407 --SRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 +R K+ D LY++ G+ E L N PAY P W Sbjct: 147 VSTRNKNPD----LYAVTAGGKGERRLTNDPAYDLHPAW 181 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 18/213 (8%) Query: 247 DRAPKRI---GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL-TNTLF 302 + AP R+ G+F+ + ++S +GK L++ + M ++ + +RL Sbjct: 26 ENAPVRLTKDGSFKQNV---QWSPDGKTLLLTRIHEGKMALWIMPAAGGEMKRLLPGHTE 82 Query: 303 INISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + YSPD ++IV+ D+ +GK ++ V ++GSD + + K A P +SP G Sbjct: 83 PHFDGHYSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHK-AFEESPRFSPDG 141 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSK 417 + + + + + G ER L D P WSP G+ + F+ + G Sbjct: 142 KTVLWVSTRNKNPDLYAVTAGGKGERRLTNDPAYDLHPAWSPDGKRVAFASGRSGRQKIH 201 Query: 418 LYSIDLNG-----RNETLINTPAYASDPQWVGF 445 + S D G E L + P + D + + F Sbjct: 202 VMSADGTGVQKLTDGEFLDSWPVWHPDGERIAF 234 >gi|208780417|ref|ZP_03247758.1| TolB amino- domain family protein [Francisella novicida FTG] gi|208743785|gb|EDZ90088.1| TolB amino- domain family protein [Francisella novicida FTG] Length = 439 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 K + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 102 KNAYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 161 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 220 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 221 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDKTNIYIMNLAT 278 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 279 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 337 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 338 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 395 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 396 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 434 >gi|153826263|ref|ZP_01978930.1| tolB protein [Vibrio cholerae MZO-2] gi|149740028|gb|EDM54203.1| tolB protein [Vibrio cholerae MZO-2] Length = 328 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 152/318 (47%), Gaps = 13/318 (4%) Query: 133 VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG--II 189 V + ++ K + PAS R+ AH I+D +Y+ +TGE+G F +RI +V VV+ Sbjct: 20 VLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAFLTRIAYV---VVNDKDPY 76 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N R + S+ Q L P +SP+ Q +AY ++ + +Y+M+ + Sbjct: 77 PYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSFQNGQA-EIYMMNIYSGKR 134 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + +F APRFS +GK + + K + +Y++DL + +T+ N + Sbjct: 135 EK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFW 193 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD ++F SDR GK Q+Y + +G + KR++ + + +P G + S Sbjct: 194 HPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQI-TPDGKFLVMVNRSDS 252 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 F + + ++L + ++P+ +P+G +I+S + + SID GR Sbjct: 253 GFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSID--GRFKA 310 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W F+ Sbjct: 311 RLPATNGRVRAPAWSPFL 328 >gi|118496965|ref|YP_898015.1| group A colicin translocation; tolB protein [Francisella tularensis subsp. novicida U112] gi|194324194|ref|ZP_03057968.1| TolB amino- domain family protein [Francisella tularensis subsp. novicida FTE] gi|166988077|sp|A0Q4U6|TOLB_FRATN RecName: Full=Protein tolB; Flags: Precursor gi|118422871|gb|ABK89261.1| group A colicin translocation; tolB protein [Francisella novicida U112] gi|194321641|gb|EDX19125.1| TolB amino- domain family protein [Francisella tularensis subsp. novicida FTE] Length = 435 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 44 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 K + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 98 KNAYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 157 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 216 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 217 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLAT 274 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 275 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 333 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 334 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 391 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 392 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 430 >gi|254373809|ref|ZP_04989292.1| TolB protein precursor [Francisella novicida GA99-3548] gi|151571530|gb|EDN37184.1| TolB protein precursor [Francisella novicida GA99-3548] Length = 439 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 K + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 102 KNAYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 161 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 220 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 221 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLAT 278 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 279 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 337 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 338 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 395 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 396 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 434 >gi|254372335|ref|ZP_04987826.1| TolB protein precursor [Francisella tularensis subsp. novicida GA99-3549] gi|151570064|gb|EDN35718.1| TolB protein precursor [Francisella novicida GA99-3549] Length = 439 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 K + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 102 KNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 161 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 220 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 221 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLAT 278 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 279 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 337 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 338 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 395 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 396 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 434 >gi|328676439|gb|AEB27309.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Francisella cf. novicida Fx1] Length = 435 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 104/404 (25%), Positives = 185/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I ++P W SL + +V + Sbjct: 44 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNVP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 K + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 98 KNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 157 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 216 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 217 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLAT 274 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 275 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 333 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 334 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 391 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 392 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 430 >gi|254369035|ref|ZP_04985048.1| protein tolB precursor [Francisella tularensis subsp. holarctica FSC022] gi|157121956|gb|EDO66126.1| protein tolB precursor [Francisella tularensis subsp. holarctica FSC022] Length = 439 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 19/325 (5%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 102 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 161 Query: 177 ILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 + +V S + L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVKVSNLYARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSGG 221 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSN 292 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 222 S-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATK 279 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFD 351 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K ++ Sbjct: 280 ALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYE 338 Query: 352 PVWSPQGDLIAF----TKFSGEKFA 372 P ++P G I F ++ SG + A Sbjct: 339 PNYTPDGKNIVFMNQSSRTSGTQIA 363 >gi|281357813|ref|ZP_06244299.1| Periplasmic component of the Tol biopolymer transport system-like protein [Victivallis vadensis ATCC BAA-548] gi|281315760|gb|EFA99787.1| Periplasmic component of the Tol biopolymer transport system-like protein [Victivallis vadensis ATCC BAA-548] Length = 404 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/331 (27%), Positives = 150/331 (45%), Gaps = 22/331 (6%) Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE---KGDFNSRI 177 +D R+ F D+ +G + S R IA + + I + + KG SRI Sbjct: 81 RDGDRIRF---DLTQGGAPVGSWQAGAAGSDRAIAKNVVNAIIEKTFKDLKVKGFCASRI 137 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 F +++ ++N + V D DG N+ +T + + EP + P+ + + Y+ Y I Sbjct: 138 AFCAQTAPG--VRN-IYVCDIDGGNVEQIT-RFNTLCVEPCWFPDGRSIGYSKYGRTGID 193 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V T R + + FR + S +G++ + + D +D+Y + + S RL Sbjct: 194 VV--QTTLNPRRSRVLSAFRGINAGAAISPDGRQLAVILSPDHQVDLYVMPVGSTRLTRL 251 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLY-VMQSNGSDQKR---ISQDKEASYFDPV 353 T + + S +SPD SQ+ + SD G ++Y V +GS +KR I ++A P Sbjct: 252 TRNIAVEASPCWSPDGSQLAYVSDETGSPRIYTVTVHDGSGRKRLPVIPGGRDA--VTPD 309 Query: 354 WSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 WS G ++ TK +G + I V K G +R N ++P W+ R ++ R DG Sbjct: 310 WSKDGKIVYATKVNGN-YTIAVYDTKTGENKRATEAPGNWESPAWAADNRQVVCKR-ADG 367 Query: 413 DTGSKLYSIDL-NGRNETLINTPAYASDPQW 442 S LY +D G+ L+ TP S P W Sbjct: 368 SGKSALYVVDTWTGKTRLLVATPYNLSMPVW 398 >gi|167009212|ref|ZP_02274143.1| TolB protein precursor [Francisella tularensis subsp. holarctica FSC200] gi|169656512|ref|YP_001427788.2| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954015|ref|ZP_06558636.1| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica URFT1] gi|295312604|ref|ZP_06803357.1| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica URFT1] gi|164551580|gb|ABU60832.2| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 439 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 19/325 (5%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSVMVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 102 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 161 Query: 177 ILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 + +V S + L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVKVSNLYARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSGG 221 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSN 292 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 222 S-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATK 279 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFD 351 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K ++ Sbjct: 280 ALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYE 338 Query: 352 PVWSPQGDLIAF----TKFSGEKFA 372 P ++P G I F ++ SG + A Sbjct: 339 PNYTPDGKNIVFMNQSSRTSGTQIA 363 >gi|89255760|ref|YP_513122.1| TolB protein precursor [Francisella tularensis subsp. holarctica LVS] gi|115314254|ref|YP_762977.1| TolB protein [Francisella tularensis subsp. holarctica OSU18] gi|254367130|ref|ZP_04983163.1| tolB protein precursor [Francisella tularensis subsp. holarctica 257] gi|119371043|sp|Q2A580|TOLB_FRATH RecName: Full=Protein tolB; Flags: Precursor gi|122325710|sp|Q0BNJ4|TOLB_FRATO RecName: Full=Protein tolB; Flags: Precursor gi|89143591|emb|CAJ78774.1| TolB protein precursor [Francisella tularensis subsp. holarctica LVS] gi|115129153|gb|ABI82340.1| TolB protein [Francisella tularensis subsp. holarctica OSU18] gi|134252953|gb|EBA52047.1| tolB protein precursor [Francisella tularensis subsp. holarctica 257] Length = 435 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 19/325 (5%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 44 VDQFPQQVNSVMVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 98 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 157 Query: 177 ILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 + +V S + L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVKVSNLYARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSGG 217 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSN 292 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 218 S-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATK 275 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFD 351 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K ++ Sbjct: 276 ALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYE 334 Query: 352 PVWSPQGDLIAF----TKFSGEKFA 372 P ++P G I F ++ SG + A Sbjct: 335 PNYTPDGKNIVFMNQSSRTSGTQIA 359 >gi|223938135|ref|ZP_03630032.1| WD40 domain protein beta Propeller [bacterium Ellin514] gi|223893179|gb|EEF59643.1| WD40 domain protein beta Propeller [bacterium Ellin514] Length = 392 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 135/277 (48%), Gaps = 12/277 (4%) Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 K ++ K +S AS R AH ++DD+ +T G ++RI F ++ ++ + V Sbjct: 95 KTVLFSKAYSG-ASTRSQAHRLADDVVLKLTSVNGIASTRIAFKVDTGA----QSEIYVS 149 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + +T S + I+ P + P + + Y TY Y +R + + + Sbjct: 150 DFDGHNPQAVT-SDNTIVASPCWFPGRLALCYLTYKLGPAKVFYQNLATGER--RNVAQY 206 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++P S +GK A++ + K + D+Y +L + ++LT+T S +SPD I Sbjct: 207 PGDGISPAVSKDGKVAMV-LSKSGSPDLYVCNLDGSGMKQLTHTREDESSPCFSPDGQWI 265 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F S + L + +G KRI ++ +P WSP G I FT + F I V+ Sbjct: 266 CFASKGGERRALSKVSVDGGSVKRIPTAGVSNPSEPDWSPDGKYIVFTSQNSRGFNICVV 325 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 +G +L E + P+W+P+ R+++F+R+K G+ Sbjct: 326 PAEGGTAIVLTEGED---PSWAPNSRTVVFARRKGGN 359 >gi|56707949|ref|YP_169845.1| TolB protein precursor [Francisella tularensis subsp. tularensis SCHU S4] gi|110670420|ref|YP_666977.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC198] gi|254370438|ref|ZP_04986443.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC033] gi|254874753|ref|ZP_05247463.1| tolB protein [Francisella tularensis subsp. tularensis MA00-2987] gi|67461899|sp|Q5NGJ7|TOLB_FRATT RecName: Full=Protein tolB; Flags: Precursor gi|118574581|sp|Q14HZ9|TOLB_FRAT1 RecName: Full=Protein tolB; Flags: Precursor gi|56604441|emb|CAG45473.1| TolB protein precursor [Francisella tularensis subsp. tularensis SCHU S4] gi|110320753|emb|CAL08856.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC198] gi|151568681|gb|EDN34335.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC033] gi|254840752|gb|EET19188.1| tolB protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 439 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 104/404 (25%), Positives = 184/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 48 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 101 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 102 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 161 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 162 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 220 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 221 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLST 278 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 279 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 337 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 338 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 395 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 396 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 434 >gi|224457030|ref|ZP_03665503.1| TolB protein precursor [Francisella tularensis subsp. tularensis MA00-2987] gi|282159134|gb|ADA78525.1| TolB protein precursor [Francisella tularensis subsp. tularensis NE061598] Length = 435 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 104/404 (25%), Positives = 184/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 44 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 98 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 157 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 216 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 217 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLST 274 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 275 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 333 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 334 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 391 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 392 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 430 >gi|57340054|gb|AAW50014.1| hypothetical protein FTT0840 [synthetic construct] Length = 474 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 104/404 (25%), Positives = 184/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 74 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 127 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 128 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 187 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 188 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 246 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 247 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLST 304 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 305 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 363 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 364 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 421 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 422 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 460 >gi|187931255|ref|YP_001891239.1| group A colicin translocation; tolB protein [Francisella tularensis subsp. mediasiatica FSC147] gi|226705884|sp|B2SET5|TOLB_FRATM RecName: Full=Protein tolB; Flags: Precursor gi|187712164|gb|ACD30461.1| group A colicin translocation; tolB protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 435 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 104/404 (25%), Positives = 184/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 44 VDQFPQQVNFVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 98 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRALAHKISNYVYQKLTGNQGFFLTK 157 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 216 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P FS +GK +++ K + +IY ++L + Sbjct: 217 GS-MGVYTLEIATGKV-TRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLST 274 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 275 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 333 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 334 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 391 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 392 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 430 >gi|134302258|ref|YP_001122227.1| beta propeller repeat-containing outer membrane protein [Francisella tularensis subsp. tularensis WY96-3418] gi|166229978|sp|A4IYV5|TOLB_FRATW RecName: Full=Protein tolB; Flags: Precursor gi|134050035|gb|ABO47106.1| outer membrane protein/ tol-pal system beta propeller repeat protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 435 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 103/404 (25%), Positives = 183/404 (45%), Gaps = 36/404 (8%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D+ +V+ V+ DL + L + D+ K +I +IP W SL + +V + Sbjct: 44 VDQFPQQVNSVIVADLNHNA--KLQANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYT 97 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSR 176 + VE ++ D + + + S R +AH IS+ +YQ +TG +G F ++ Sbjct: 98 NNSYNNYTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTK 157 Query: 177 ILFVSES---VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S G + L + D DG N + D + P +S + + + Y++Y Sbjct: 158 LAYVKVSNPYARYGRLY-ELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYSG 216 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + VY ++ + RI N++ + +P S +GK +++ K + +IY ++L + Sbjct: 217 GS-MGVYTLEIATGKV-TRITNYKGINSSPSLSPDGKEIALALSKGYSDQTNIYIMNLST 274 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYF 350 A +R+T IN + +SP+ IVF SDREG+ +YV N Q I K + Sbjct: 275 KALKRIT-INGINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAY 333 Query: 351 DPVWSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P ++P G I F ++ SG + A +GS + ++ +PT SP G + + Sbjct: 334 EPNYTPDGKNIVFMNQSSRTSGTQIA-DFNLANGSVTNITNGKAD-SSPTVSPYGDMVAY 391 Query: 407 SRKKDGDTGSKLYS----IDLNGRN----ETLINTPAYASDPQW 442 T ++ YS + L+G N ET N P W Sbjct: 392 I-----STNTRGYSSLDMVSLDGDNHFNIETADNGNILIQSPSW 430 >gi|268326068|emb|CBH39656.1| conserved hypothetical secreted protein, containing WD40-like beta propeller repeats [uncultured archaeon] gi|268326194|emb|CBH39782.1| conserved hypothetical secreted protein, containing WD40-like beta propeller repeats [uncultured archaeon] Length = 303 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 22/276 (7%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI F S + G N + VMD DG N+ LT + P + P K+A+ + D D Sbjct: 35 RIAFTSN--MDG--NNEIYVMDADGTNVTRLTNDIANDI-NPEWHPKGCKIAFTSDRDGD 89 Query: 236 ILRVYLMD---TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 L +YLMD T I ++ N +S NG R S +D +IY +D + Sbjct: 90 -LEIYLMDVDGTNI----TQLTNNTVADGCQCWSPNGSRIAFSSDRDGDPEIYVMDAEGT 144 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 RLT+ ++I+ +SPD S+I F S R G ++YVM NG+++++++ + + + P Sbjct: 145 NVTRLTDNTCLDINPHWSPDGSKIAFSSGRVGDTEIYVMDVNGANKEQLTDNNK--WDSP 202 Query: 353 -VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIF-SR 408 W+ + + F+ F + +M DG++ L ++ Q +P W+ G ++F + Sbjct: 203 GEWASDSNKLLFSSDRDGDFEVYLMDADGTKVTQLTNNAEYQEGSPAWALGGEKIVFVAG 262 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWV 443 + GD ++Y +D +G N T + T A SDP W Sbjct: 263 RYKGDF--EIYMMDSDGTNITQMTTNFADESDPVWA 296 >gi|225165753|ref|ZP_03727545.1| periplasmic component of the Tol biopolymer transport system-like protein [Opitutaceae bacterium TAV2] gi|224800006|gb|EEG18443.1| periplasmic component of the Tol biopolymer transport system-like protein [Opitutaceae bacterium TAV2] Length = 410 Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 8/248 (3%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ++ +G G FN+R+ F+SE SG K + D IR +T + + PR+SP+ Sbjct: 133 KATSGLNGYFNTRLAFISER--SG--KPEVYTSDLFAGEIRQIT-HDNALAVSPRWSPDG 187 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 Q + Y +Y ++ MD + + +F+ R+S NG + + + + + Sbjct: 188 QGIIYTSYFRRGFPDIFKMDLNTLQRSTLV-SFKGTNTGARYSPNGAQIAMVLSGEGNPE 246 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y D Q RLT T + S +SPD SQ+VF SD G QLYVM + G R+ Sbjct: 247 LYISDSQGRGVRRLTRTASVEASPCFSPDGSQLVFTSDAAGGPQLYVMSTAGGGASRLPT 306 Query: 344 DKEASYFDPVWS-PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSG 401 + +P WS + IAFT G F I V ++ + N P+W G Sbjct: 307 NLSRYCAEPDWSRANPNKIAFTVRIGSGFQIAVYDMSTRSAAVVSKAPNDAVEPSWLADG 366 Query: 402 RSLIFSRK 409 R LI++++ Sbjct: 367 RHLIYTQR 374 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 10/180 (5%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-REGKE 326 N + A IS ++ ++Y+ DL + ++T+ + +S +SPD I++ S R G Sbjct: 143 NTRLAFIS-ERSGKPEVYTSDLFAGEIRQITHDNALAVSPRWSPDGQGIIYTSYFRRGFP 201 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERL 385 ++ M N + Q+ + + +SP G IA SGE + + G R Sbjct: 202 DIFKMDLN-TLQRSTLVSFKGTNTGARYSPNGAQIAMV-LSGEGNPELYISDSQGRGVRR 259 Query: 386 LVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTPAYASDPQW 442 L ++++A P +SP G L+F+ D G +LY + G + + N Y ++P W Sbjct: 260 LTRTASVEASPCFSPDGSQLVFT--SDAAGGPQLYVMSTAGGGASRLPTNLSRYCAEPDW 317 >gi|225872181|ref|YP_002753636.1| tolB protein, putative [Acidobacterium capsulatum ATCC 51196] gi|225793038|gb|ACO33128.1| tolB protein, putative [Acidobacterium capsulatum ATCC 51196] Length = 465 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 181/395 (45%), Gaps = 36/395 (9%) Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL--GAQVLVTGRVIKEGKDRL 124 +V+ DL+ + +F+++S+ + W+ AQ++ G + G +L Sbjct: 85 QVLYSDLENAGIFDMVSKSMAPPAMPGSPKELVLSQWSQPPSNAQMVAFGTLGVSGG-QL 143 Query: 125 RVEFRLWDVK--DRKQIIGKKFFS--SPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 V+ L+D K D Q++GK++ + + + R IAH +D+I + G G ++I +V Sbjct: 144 TVQGYLYDTKNADTPQVLGKQYSAQANESDARDIAHRFADEIILRLGGIPGIAQTKIYYV 203 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRV 239 V G+ K + VMD DGAN + +T + P SP+ K+A+ T+ + +R+ Sbjct: 204 ---VGRGMHKE-IWVMDYDGANKQQVTHLGSDSM-APAVSPDNSKLAFETFGKYGMQIRI 258 Query: 240 YLMDTRIDRAPKRIGNFRS---MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 Y + R +F S ++P +S +G S DIY D R Sbjct: 259 YSLLLH------RYLHFVSPGGTTISPSWSPDGIHLAYSSSGAGNPDIYVSDANGMNRHR 312 Query: 297 LTNTLFINISASYSPDS-SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +T N ++P + +QI +ES Q+Y M ++GS+ R++ A P WS Sbjct: 313 ITAFRGPNAQPVWNPKTGAQIAWESGMTSLPQIYTMDADGSNVSRLTDGGYA--VSPSWS 370 Query: 356 PQGDLIAFT--KFSGEKFAIG--VMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFS 407 P G +AF + G G + D + R V+ ++ Q P+W+P GR ++F Sbjct: 371 PNGQFLAFAWDRHYGPGAPGGEDIYIMDITTHR-WVQLTHGQGVNDFPSWAPDGRHIVFQ 429 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 R + G T ++S+ NG+ + + ++ P W Sbjct: 430 RTEGGRT--DIWSMLANGQQQEQLTHNGSSTMPDW 462 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 42/162 (25%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + MD DG+N+ LT + P +SPN Q +A+A +D R Y P Sbjct: 345 IYTMDADGSNVSRLTDGGYAV--SPSWSPNGQFLAFA-WD-----RHY--------GPGA 388 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 G DIY +D+ ++ +LT+ +N S++PD Sbjct: 389 PG--------------------------GEDIYIMDITTHRWVQLTHGQGVNDFPSWAPD 422 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 IVF+ G+ ++ M +NG Q++++ + ++ D W Sbjct: 423 GRHIVFQRTEGGRTDIWSMLANGQQQEQLTHNGSSTMPDWSW 464 >gi|254443124|ref|ZP_05056600.1| hypothetical protein VDG1235_1358 [Verrucomicrobiae bacterium DG1235] gi|198257432|gb|EDY81740.1| hypothetical protein VDG1235_1358 [Verrucomicrobiae bacterium DG1235] Length = 355 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 129/279 (46%), Gaps = 17/279 (6%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI-LFEPRFSPNQQKVAY 228 +G F+ ++ F+SE + +CV D N+ LT D + P +SP+ + Y Sbjct: 88 EGFFSGKLTFISEETGA----TEVCVSDLLFQNVTILT--NDGVNAVRPHWSPDGNYIVY 141 Query: 229 ATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 +Y DI R+ L R D + +++ + + R+S +G R + V + D++ Sbjct: 142 TSYKAGFPDIYRLDLRAQRRDV----VADYKGLNMGARYSPDGSRIAMIVSGNSNADVW- 196 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 V S LT + + + ++SPD +++VF SD G QLYVM ++G +R+ D Sbjct: 197 VREASGEMRNLTRSRGLEAAPAWSPDGTRLVFSSDERGGPQLYVMPAHGGTSRRLRTDIS 256 Query: 347 ASYFDPVWSPQ-GDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSL 404 +P W+PQ +LIAFT G I + + R + E + P W GR L Sbjct: 257 GYCAEPDWNPQFENLIAFTAAEGSGSQIAIYDSKAGKSRFVTTESGDAIEPQWLNDGRHL 316 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +++ ++ + K+ L G + + A S P +V Sbjct: 317 VYTHRRANRSEIKIMDT-LTGASYVISGRRAKVSQPSFV 354 >gi|301167924|emb|CBW27509.1| putative periplasmic TolB protein [Bacteriovorax marinus SJ] Length = 440 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 18/321 (5%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS 159 + + + G ++ G ++ + L+V + DV + K + + + S + R AH S Sbjct: 88 YSSFKTQGVSYVIRG-FFRQSGNSLQVTLLVHDVANTKVVSEESYTYSGENPRGFAHRFS 146 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQILFEPR 218 D Y+ ITG FNS+++FVS+ + L +MD DG N + LT ++ P Sbjct: 147 DTAYKKITGSDSIFNSKMIFVSDRHGNKQTPVKELYMMDFDGGNKKRLT-HHGGVVISPA 205 Query: 219 FSPNQQKVAYATYDDEDI------LRVYLMDT-RIDRAPKRIGNFRSMILAPRFSSNGKR 271 S + KV Y+ +E LRVY ++T R R G + P G+ Sbjct: 206 ISHDGTKVLYSLIKNEKSKHRNINLRVYDLETGRNSLVSSRNGLNSGAVFMP----GGES 261 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 L+++ +I+ ++L++ A +RLTN+ ++ S + + S + F S R GK +Y M Sbjct: 262 ILLTLSHVGNAEIFIMNLKTKALKRLTNSYSPDVDPSINENGSIMTFLSGRAGKPMIYTM 321 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-- 389 KRIS + + P ++P G IAF+ + +F I + DGS L +D Sbjct: 322 DMATRAVKRISFVGKFNA-TPRFAPDGKTIAFSSWLDSRFDIFRIDSDGSNLARLTKDFG 380 Query: 390 SNLQAPTWSPSGRSLIFSRKK 410 SN + PT+S G+ + FS ++ Sbjct: 381 SN-EDPTYSNDGQFIAFSSQR 400 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y MD RA KRI PRF+ +GK S D DI+ +D + RLT Sbjct: 318 IYTMDMAT-RAVKRISFVGKFNATPRFAPDGKTIAFSSWLDSRFDIFRIDSDGSNLARLT 376 Query: 299 NTLFINISASYSPDSSQIVFESDR-----EGKEQLYVMQSNG 335 N +YS D I F S R + +Y+M ++G Sbjct: 377 KDFGSNEDPTYSNDGQFIAFSSQRVLSRTRAVQNIYIMDNDG 418 >gi|148653367|ref|YP_001280460.1| WD40 domain-containing protein [Psychrobacter sp. PRwf-1] gi|148572451|gb|ABQ94510.1| WD40 domain protein beta Propeller [Psychrobacter sp. PRwf-1] Length = 449 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 172/381 (45%), Gaps = 17/381 (4%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS ++ +LQ + + SQ Q + D W LG LV G ++G + Sbjct: 80 VSSLIENNLQATP-LKITSQGLIGQPHSRDDLAVTLPAWQQLGIPYLVIGSSKQQGGNT- 137 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + F + +V + I G + + A+ + IY+ +TG++ D N+R+++V E Sbjct: 138 SITFEVIEVAQGRIIKGTQMVQG-VDKKAAANKAAGRIYELLTGKQIDLNARLVYVEEKG 196 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 +SL + D DG+N R L D ++ P SP+ + VAY+ ++ ++ D Sbjct: 197 SGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAYSVQLKDNSANLWKQDL 256 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + R R+ + + L+P FS +G + L S + DIY V Q E++ + + Sbjct: 257 QT-RQLTRLVDMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSSQGGKAEQIISLPYDQ 315 Query: 305 ISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 +S SY+ + S VF SD + +Y +GS +IS+ A+ +P SP+G I Sbjct: 316 LSPSYASNGS-FVFVSDHASPNRPNIYRYSFSGSP-VQISRGGYAA--NPSISPEGTKIG 371 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + SG AI M +GS AP +SP+G +++S+ G S L Sbjct: 372 Y--LSGRSAAI--MSSNGSNVANYGATGIDAAPKFSPTGERVVYSQ---GTKNSNLVIRY 424 Query: 423 LNGRNETLINTPAYASDPQWV 443 ++G + T A P WV Sbjct: 425 VDGGKTITLPTEGVAKFPVWV 445 >gi|159897506|ref|YP_001543753.1| WD40 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890545|gb|ABX03625.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus ATCC 23779] Length = 316 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 14/238 (5%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRA 272 L P Q++A+ I R +M + +D P ++ N + + P +S +G Sbjct: 39 LATPTVGEAPQRLAFVA---NQINRGTIMISGLDANPPQLLNPDFPLAIDPTWSPDGNEL 95 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 VQ + ++Y + ++TN + S S+SPD Q+ F+S+R G ++LY++ Sbjct: 96 AFVVQDSDGFNMYISSADGSNLFQVTNQPGDDQSPSWSPDGQQLAFQSNRSGNDELYLIN 155 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG------VMKKDGSQERLL 386 +GS+ ++++ D A + P WSP G LIAFT G + G V++ DG + L Sbjct: 156 RDGSNLRQLTNDP-ARDWQPSWSPDGSLIAFTSDRGAQTPDGWNDQLYVIQPDGQGLKYL 214 Query: 387 VED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 E + P WSP + L++ + +Y+++ +G + TL+ A A DPQW+ Sbjct: 215 TEGFGRARHPAWSPDSQQLVYVVGGGDVGSNSIYTVNRDGSDPTLLY--ANAFDPQWL 270 >gi|303248655|ref|ZP_07334909.1| WD40 domain protein beta Propeller [Desulfovibrio fructosovorans JJ] gi|302489911|gb|EFL49837.1| WD40 domain protein beta Propeller [Desulfovibrio fructosovorans JJ] Length = 440 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 99/385 (25%), Positives = 169/385 (43%), Gaps = 19/385 (4%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKI--TNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 K+ ++++KDLQ L+ + +I D I F+ ++ VLVT + G Sbjct: 64 KLQDLINKDLQFLPFLQLVPPSNIPGQIGGATADQI-DFKPFSMGKIDVLVTSK-WTPGG 121 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + VE R ++V +K I+GK + S + A IA ++ ++TG+ G FNS+I FV Sbjct: 122 NLGNVELRAFEVYSQKVIVGKGYDSVTDAQLPDIADRFCMELMAALTGQGGFFNSQIAFV 181 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRV 239 S G + + G + +T + + E P +S + + +A+ Sbjct: 182 KPSSGKG---TDIWTVRPTGRGLTRITHYNELGMAESPAWSFDGRSIAFTLIGSRS---H 235 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL P+ + +++PRF NG+ A +SV+ DIY ++ L Sbjct: 236 YLGVWSGGGKPQVYTLPSTNVVSPRFLPNGQIA-VSVRMHGKADIYLLNANHQPGRVLAG 294 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 IN+S S+ S + F +D+ G +Y+ +G +RI+ + +P SP G Sbjct: 295 GPGINVSPSFDASGSLMAFVNDQAGNPNIYLQNVSGGSPRRITPSGYNT--NPSLSPDGK 352 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKL 418 LIA+TK G + V Q+ + + P++SP G ++FS + G KL Sbjct: 353 LIAYTKQLGGAQKVFVHDMTTGQDTQVTSGGGSDENPSFSPDGYFIVFSSTRSGQ--KKL 410 Query: 419 YSIDLNGRNETLINTP-AYASDPQW 442 Y +G +I T A P W Sbjct: 411 YVTTRHGTPPIMIPTGDGTAQMPCW 435 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +GK + Q A ++ D+ + ++T+ + + S+SPD IVF S R Sbjct: 345 PSLSPDGKLIAYTKQLGGAQKVFVHDMTTGQDTQVTSGGGSDENPSFSPDGYFIVFSSTR 404 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 G+++LYV +G+ I + P W P Sbjct: 405 SGQKKLYVTTRHGTPPIMIPTGDGTAQM-PCWGP 437 >gi|145628741|ref|ZP_01784541.1| translocation protein TolB precursor [Haemophilus influenzae 22.1-21] gi|144979211|gb|EDJ88897.1| translocation protein TolB precursor [Haemophilus influenzae 22.1-21] Length = 317 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 129/257 (50%), Gaps = 11/257 (4%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + Sbjct: 62 ISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 119 Query: 125 RVEFRLWDVKDRKQIIG----KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G + ++ W R AHT+SD++++ +T +G F +RI + Sbjct: 120 SITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAY 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ ++ Sbjct: 180 VVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK-SQL 236 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D A K + +F+ AP FS +G R + +D ++IY + +LT+ Sbjct: 237 VVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTS 295 Query: 300 TLFINISASYSPDSSQI 316 N ++SPD + I Sbjct: 296 GAGNNTEPAWSPDGNSI 312 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 8/155 (5%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY---VMQSNGSDQKRISQDKEASY 349 +++ +F ++A ++I + + G Q Y V +G +Q +++ + Sbjct: 154 GAHTVSDEVFEKLTAIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGYNQFIVNRSAQ-PI 212 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR 408 P WSP G +A+ F +K + V + +++ + AP +SP G L F+ Sbjct: 213 MSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGARKVVASFQGHNGAPAFSPDGSRLAFAS 272 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQW 442 +DG +Y + NG T + + A ++P W Sbjct: 273 SRDGVL--NIYVMGANGGTPTQLTSGAGNNTEPAW 305 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +S ++SPD ++ + S K QL V N S +++ + P +SP G +AF Sbjct: 213 MSPAWSPDGQRLAYVSFENKKSQLVVQDLN-SGARKVVASFQGHNGAPAFSPDGSRLAFA 271 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSL 404 I VM +G L + N P WSP G S+ Sbjct: 272 SSRDGVLNIYVMGANGGTPTQLTSGAGNNTEPAWSPDGNSI 312 >gi|156744050|ref|YP_001434179.1| WD40 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235378|gb|ABU60161.1| WD40 domain protein beta Propeller [Roseiflexus castenholzii DSM 13941] Length = 572 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 6/183 (3%) Query: 263 PRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P G+ + + D A DI+S DL LT + + S S+SPD++ +VF S Sbjct: 29 PALPGQGRILFAAARGDNGAFDIFSADLAGERAANLTADPYPDRSPSWSPDANHVVFASR 88 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R LYVM+++GSD +R++ + A +P WSP G +AFT I + G Sbjct: 89 RGDNWDLYVMRADGSDLRRLT-NHPAYDGEPSWSPDGRRVAFTSMRDGNPEIYTLDLIGG 147 Query: 382 QERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASD 439 R + A PTWSP GR + F+ +DG+ ++Y D +G L N PA Sbjct: 148 DARRITTHPAADAQPTWSPDGRRIAFTSWRDGN--QEIYIADAESGAVINLTNHPAPDHS 205 Query: 440 PQW 442 P W Sbjct: 206 PAW 208 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 10/183 (5%) Query: 193 LCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L VM DG+++R LT P+ D EP +SP+ ++VA+ + D + +Y +D I Sbjct: 95 LYVMRADGSDLRRLTNHPAYDG---EPSWSPDGRRVAFTSMRDGNP-EIYTLDL-IGGDA 149 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +RI + P +S +G+R + +D +IY D +S A LTN + S ++S Sbjct: 150 RRITTHPAADAQPTWSPDGRRIAFTSWRDGNQEIYIADAESGAVINLTNHPAPDHSPAWS 209 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--G 368 PD +I F SDR+G L++ ++ R D DP W+P G L+A ++ G Sbjct: 210 PDGGRIAFISDRDGGGNLHIRDLITGEELRAGPDN-LGLRDPAWTPGGGLMAVAPWALGG 268 Query: 369 EKF 371 +F Sbjct: 269 RRF 271 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P +S + + + ++ + D+Y + + RLTN + S+SPD ++ F S Sbjct: 73 SPSWSPDANHVVFASRRGDNWDLYVMRADGSDLRRLTNHPAYDGEPSWSPDGRRVAFTSM 132 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-G 380 R+G ++Y + G D +RI+ A P WSP G IAFT + I + + G Sbjct: 133 RDGNPEIYTLDLIGGDARRITTHPAADA-QPTWSPDGRRIAFTSWRDGNQEIYIADAESG 191 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + L + +P WSP G + F +DG G L+ DL Sbjct: 192 AVINLTNHPAPDHSPAWSPDGGRIAFISDRDG--GGNLHIRDL 232 >gi|149199226|ref|ZP_01876264.1| WD40-like Beta Propeller [Lentisphaera araneosa HTCC2155] gi|149137651|gb|EDM26066.1| WD40-like Beta Propeller [Lentisphaera araneosa HTCC2155] Length = 407 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 23/280 (8%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I F + V+G + LC D DG N+R T + I PR+SP+ + + Y Y Sbjct: 134 SQIAFCAR--VNGKKEIYLC--DLDGNNLRKKTNFKS-ITALPRWSPDNRYLVYTVYGKA 188 Query: 235 DILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-N 292 + T ++ RI ++R M F G ++++ K ++D+Y +DL + Sbjct: 189 S---TNIFQTDLNSNKHRILSHYRGMNTGAAFRPKGNAIVMTLSKGNSVDLYWMDLNNIG 245 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQSNGSDQKRISQDKE 346 T RLT T + S +SP +QI + S +LYVM ++ K + D+ Sbjct: 246 KTGRLTKTTSLESSPVFSPSGAQICYVSSSVSSSGKVSTPRLYVMNASKLTTKPLFNDR- 304 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVM--KKDGSQERLLVEDS-NLQAPTWSPSGRS 403 + P WS +L+ ++K G ++ I K E+++ + + + +AP+WSP GR Sbjct: 305 SERVSPDWSKTSNLLVYSKKMGRQYVIATCDPKNPSGTEKIISKTAGHWEAPSWSPDGRH 364 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQW 442 ++ +R G+ +LY +D + INT + S P W Sbjct: 365 IVCTRDTGGE--KQLYIVDTLYKTSRKINTTLKHCSSPSW 402 Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +SQI F + GK+++Y+ +G++ ++ + K + P WSP + +T + Sbjct: 133 TSQIAFCARVNGKKEIYLCDLDGNNLRKKTNFKSITAL-PRWSPDNRYLVYTVYGKASTN 191 Query: 373 IGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN--GRNET 429 I + ++ R+L + + P G +++ + K LY +DLN G+ Sbjct: 192 IFQTDLNSNKHRILSHYRGMNTGAAFRPKGNAIVMTLSKGNSVD--LYWMDLNNIGKTGR 249 Query: 430 LINTPAYASDP 440 L T + S P Sbjct: 250 LTKTTSLESSP 260 >gi|319760470|ref|YP_004124408.1| protein TolB [Candidatus Blochmannia vafer str. BVAF] gi|318039184|gb|ADV33734.1| protein TolB [Candidatus Blochmannia vafer str. BVAF] Length = 460 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 19/268 (7%) Query: 70 SKDLQRSDVFNLISQDSFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + DL+ S FN + + + D +P F W LG +V G + + D + + Sbjct: 66 AADLRNSGKFNTLPISFLPHQPSKLSDIVPMF--WKKLGINTIVLGSINIDCNDNYLITY 123 Query: 129 RLWDVKDRKQII--GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D +I ++ R AHTIS++I++ +TG KG F +RI +VS + + Sbjct: 124 QLIDTSSNPALIILENQYLIKKKYTRCAAHTISNEIFEKLTGIKGAFCTRIAYVSY-IHN 182 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDT- 244 L V D DG N + S + L P ++P+ +K+AY + L V + T Sbjct: 183 TKYPYELYVADYDGYNQISICRSAEP-LMSPAWTPDGKKIAYVAFSSGHSELVVQTLGTG 241 Query: 245 ---RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 I + P G AP FS +G++ S K ++++Y + L S ++T+ Sbjct: 242 LINHIIKFPNHNG-------APAFSPDGEKLAFSSSKTGSLNLYVMYLSSGKICQITSNR 294 Query: 302 FINISASYSPDSSQIVFESDREGKEQLY 329 N S+ PD++ + + SD+ G Q+Y Sbjct: 295 HNNTEPSWFPDNTNLAYTSDQGGIPQIY 322 >gi|301058341|ref|ZP_07199374.1| putative Tol-Pal system beta propeller repeat protein TolB [delta proteobacterium NaphS2] gi|300447577|gb|EFK11309.1| putative Tol-Pal system beta propeller repeat protein TolB [delta proteobacterium NaphS2] Length = 205 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL D + A +R+ + + ++ NGK +++ DI+++DLQ +L Sbjct: 2 LYLRDL-VTGALRRLSGRSGLNIGACWAPNGKELALTMSHKGNPDIFTIDLQGKILRQLV 60 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQ 357 I++S ++SPD +++ F S+R G Q+Y+++ + R++ E SY P WS Sbjct: 61 EHWGIDVSPAFSPDGTKLAFVSNRSGSPQIYLLEISSGRVDRLTY--EGSYNTSPAWSAL 118 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 + IAF + F I M DGS +RL + N + P WSP GR + FS + G Sbjct: 119 -NRIAFVGKTDGHFDIFTMAPDGSGMKRLTADSGNNEDPCWSPDGRYIAFSSDRTG--AY 175 Query: 417 KLYSIDLNGRNETLIN-TPAYASDPQW 442 +Y ++ NGR + I + P W Sbjct: 176 HIYMMNANGRTQRRITFEKGKQTSPSW 202 >gi|297171859|gb|ADI22848.1| periplasmic component of the Tol biopolymer transport system [uncultured nuHF2 cluster bacterium HF0500_31B05] Length = 848 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 22/240 (9%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRA 249 + M DG R+ + + EP +SP+ ++A+ + +++E +Y M+ Sbjct: 57 IYAMSSDGEE-RFQLTRHEAMDGEPDWSPDGLRLAFVSNRAFNNE----IYTMNGD-GSG 110 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +R+ ++ +P ++ +G R +DE ++IYSVD S AT RLTN ++ ++ Sbjct: 111 VQRMTEHEAVDGSPAWAPDGSRIAFVSDRDENLEIYSVDTASGATTRLTNHEADDLEPAW 170 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD Q++F S R G ++Y ++G + +S EA+ P WSP G IA+T Sbjct: 171 SPDGRQLLFVSSRSGNAEIYAADADGGNPVNVST-HEATDGSPSWSPDGTTIAYTSDRDG 229 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ--------APTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + +M + +E NL P+WSP L F + G+ ++YS+ Sbjct: 230 NSDLYLMSAHAPE----IEPVNLTYDSAFDGFTPSWSPDSEQLTFVSNRSGNNDFEIYSM 285 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 26/265 (9%) Query: 197 DRDGANIRYLTPSRDQILFE----------PRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 DRDG + YL + FE P +SPN+ + + T D + +YL+ + Sbjct: 360 DRDGNDEIYLMSPDGMVPFELITDAANDFDPVWSPNESTIGFVT-DRDGNEEIYLVRSGA 418 Query: 247 DRAP----KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV---DLQSNATERLTN 299 + + N R +P +G R + +D +IY + D + RLTN Sbjct: 419 EEEAINLTENAANDRDFAWSP----DGDRLVFVSDRDGNDEIYILTLADTTDTSLLRLTN 474 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + ++SPD+ +I F SDR+G LY ++++ + + I ++ S DPVWSP Sbjct: 475 NTQRDGDPTWSPDAKEIAFTSDRDGGVDLYTLRADAASSEAIRLTEDGSVDDPVWSPNAT 534 Query: 360 LIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 IAF + +G++ + G+ L APTW P G L F +DG L Sbjct: 535 RIAFVSDRTGDREIYSIDADGGTAVNLSDHPGEDYAPTWFPDGSLLAFVSNRDGQ--PDL 592 Query: 419 YSIDLNGRNETLINTPAYASD-PQW 442 Y ++ +G T + D P W Sbjct: 593 YRMERDGDEVTRLTENEDEEDAPSW 617 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSS 314 +S L P S+ R + +D DIY+ + S+ ER LT ++ +SPD Sbjct: 30 KSRDLIPDDYSSEDRIAFTSDRDGDFDIYA--MSSDGEERFQLTRHEAMDGEPDWSPDGL 87 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI- 373 ++ F S+R ++Y M +GS +R+++ EA P W+P G IAF E I Sbjct: 88 RLAFVSNRAFNNEIYTMNGDGSGVQRMTE-HEAVDGSPAWAPDGSRIAFVSDRDENLEIY 146 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 V G+ RL +++ P WSP GR L+F + G+ +++Y+ D +G N ++T Sbjct: 147 SVDTASGATTRLTNHEADDLEPAWSPDGRQLLFVSSRSGN--AEIYAADADGGNPVNVST 204 Query: 434 -PAYASDPQW 442 A P W Sbjct: 205 HEATDGSPSW 214 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 20/238 (8%) Query: 215 FEPRFSPNQQKVAYATY----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 F P +SP+ +++ + + +D +I +++ P+R P +S NG Sbjct: 257 FTPSWSPDSEQLTFVSNRSGNNDFEIYSMFVQ-------PQRFLEELDQAGFPAWSRNGN 309 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R + Q DI+ D + LT ++SPD+S I F SDR+G +++Y+ Sbjct: 310 RLAVVAQGAVNKDIFVSDADGIEIDNLTTDAANERFPAWSPDASAIAFTSDRDGNDEIYL 369 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL-LVED 389 M +G + D A+ FDPVWSP I F I +++ +E + L E+ Sbjct: 370 MSPDGMVPFELITDA-ANDFDPVWSPNESTIGFVTDRDGNEEIYLVRSGAEEEAINLTEN 428 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET----LINTPAYASDPQW 442 +N + WSP G L+F +DG+ ++Y + L +T L N DP W Sbjct: 429 AANDRDFAWSPDGDRLVFVSDRDGN--DEIYILTLADTTDTSLLRLTNNTQRDGDPTW 484 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 17/243 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D A+ + + D + +P +SPN ++A+ + D +Y +D A Sbjct: 503 LYTLRADAASSEAIRLTEDGSVDDPVWSPNATRIAFVS-DRTGDREIYSIDADGGTA-VN 560 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + AP + +G +D D+Y ++ + RLT + S+SP Sbjct: 561 LSDHPGEDYAPTWFPDGSLLAFVSNRDGQPDLYRMERDGDEVTRLTENEDEEDAPSWSPS 620 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 Q+V+ S G + ++ S G +R++ D + P WS GD IA+ + Sbjct: 621 GLQLVYASGSSGNLNIQLIGSQGLVPRRVT-DHPGADVCPTWSSSGDRIAYMSNRDGNYE 679 Query: 373 IGVMKKDGSQERLLVEDSNLQA--------PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I V K Q+ L + +NL + P W+PS L+F +DG+ +++Y +D N Sbjct: 680 IYVSK----QDSLELAPTNLTSAPAADDRYPAWAPSRGELLFVSNRDGN--NEIYLMDAN 733 Query: 425 GRN 427 G N Sbjct: 734 GSN 736 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 72/316 (22%), Positives = 131/316 (41%), Gaps = 60/316 (18%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ FVS N + M+ DG+ ++ +T + + P ++P+ ++A+ + DE+ Sbjct: 88 RLAFVSNRA----FNNEIYTMNGDGSGVQRMT-EHEAVDGSPAWAPDGSRIAFVSDRDEN 142 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD------- 288 L +Y +DT A R+ N + L P +S +G++ L + +IY+ D Sbjct: 143 -LEIYSVDT-ASGATTRLTNHEADDLEPAWSPDGRQLLFVSSRSGNAEIYAADADGGNPV 200 Query: 289 -----------------------------------LQSNATE----RLT-NTLFINISAS 308 + ++A E LT ++ F + S Sbjct: 201 NVSTHEATDGSPSWSPDGTTIAYTSDRDGNSDLYLMSAHAPEIEPVNLTYDSAFDGFTPS 260 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPDS Q+ F S+R G + Q+ + + +A + P WS G+ +A Sbjct: 261 WSPDSEQLTFVSNRSGNNDFEIYSMFVQPQRFLEELDQAGF--PAWSRNGNRLAVVAQGA 318 Query: 369 EKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 I V DG + + L + +N + P WSP ++ F+ +DG+ ++Y + +G Sbjct: 319 VNKDIFVSDADGIEIDNLTTDAANERFPAWSPDASAIAFTSDRDGN--DEIYLMSPDGMV 376 Query: 428 E-TLINTPAYASDPQW 442 LI A DP W Sbjct: 377 PFELITDAANDFDPVW 392 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 56/226 (24%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L M+RDG + LT + D+ P +SP+ ++ YA+ + L + L+ ++ P+R Sbjct: 592 LYRMERDGDEVTRLTENEDE-EDAPSWSPSGLQLVYASGSSGN-LNIQLIGSQ-GLVPRR 648 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS---- 308 + + + P +SS+G R +D +IY + + L T + A+ Sbjct: 649 VTDHPGADVCPTWSSSGDRIAYMSNRDGNYEIY---VSKQDSLELAPTNLTSAPAADDRY 705 Query: 309 --YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++P +++F S+R+G ++Y+M +NGS+ R++ +P DL A Sbjct: 706 PAWAPSRGELLFVSNRDGNNEIYLMDANGSNLVRLTD-----------NPSEDLFA---- 750 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 TWSP G ++F+ + G Sbjct: 751 -----------------------------TWSPDGSQVVFASDRGG 767 >gi|295841255|dbj|BAJ07029.1| WD40-like beta propeller protein [uncultured bacterium] Length = 328 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 24/247 (9%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA-PKRIG 254 ++ DG + LT ++ L +P +SP+ + +AY D+E + +YLM + D + P R+ Sbjct: 69 VNADGTALTRLTHDEER-LSKPAWSPDGKSIAYVVTDEEFNVDIYLM--KADGSNPARLT 125 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAM--------------DIYSVDLQSNATERLTNT 300 R + P + G + S +D + +IY +D + LT++ Sbjct: 126 TDRWVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVYEFEIYVMDANGSGQTNLTDS 185 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + + ++SPD QI F+S R+ ++Y+M ++GS Q ++ E P WSP G Sbjct: 186 PGWDTAPAWSPDGGQIAFQSSRDENPEIYMMDADGSRQVNLTNHPEDDAA-PAWSPDGSK 244 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 AF F I VM+ DG+ L D ++Q P W+P G+ + F ++G+ ++ Sbjct: 245 TAFHSDRTGVFNIYVMETDGTGLVQLTSSPDWDIQ-PAWAPDGQHIAFYSGQEGNF--EI 301 Query: 419 YSIDLNG 425 Y ++ +G Sbjct: 302 YVMNADG 308 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 17/221 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA-------------TYDDEDILRV 239 + +M DG+N LT R + EP + P + ++ TY+ + Sbjct: 111 IYLMKADGSNPARLTTDR-WVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVYEFEI 169 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+MD + + AP +S +G + +DE +IY +D + LTN Sbjct: 170 YVMDAN-GSGQTNLTDSPGWDTAPAWSPDGGQIAFQSSRDENPEIYMMDADGSRQVNLTN 228 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + + ++SPD S+ F SDR G +YVM+++G+ +++ + P W+P G Sbjct: 229 HPEDDAAPAWSPDGSKTAFHSDRTGVFNIYVMETDGTGLVQLTSSPDWD-IQPAWAPDGQ 287 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSP 399 IAF F I VM DGS + L + P W P Sbjct: 288 HIAFYSGQEGNFEIYVMNADGSCQMRLTYHGDFDGFPDWRP 328 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 32/248 (12%) Query: 223 QQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 Q ++A+A+Y D +I V T + R+ + + P +S +GK V +E Sbjct: 51 QGRLAFASYRDGESEIYSVNADGTAL----TRLTHDEERLSKPAWSPDGKSIAYVVTDEE 106 Query: 281 -AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-------EGKE------ 326 +DIY + + RLT +++ ++ P IVF SDR +GK Sbjct: 107 FNVDIYLMKADGSNPARLTTDRWVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVYE 166 Query: 327 -QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QER 384 ++YVM +NGS Q ++ D P WSP G IAF E I +M DGS Q Sbjct: 167 FEIYVMDANGSGQTNLT-DSPGWDTAPAWSPDGGQIAFQSSRDENPEIYMMDADGSRQVN 225 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-------PAYA 437 L + AP WSP G F + G +Y ++ +G + + PA+A Sbjct: 226 LTNHPEDDAAPAWSPDGSKTAFHSDRTGVF--NIYVMETDGTGLVQLTSSPDWDIQPAWA 283 Query: 438 SDPQWVGF 445 D Q + F Sbjct: 284 PDGQHIAF 291 >gi|153877364|ref|ZP_02004199.1| translocation protein TolB precursor [Beggiatoa sp. PS] gi|152066172|gb|EDN65801.1| translocation protein TolB precursor [Beggiatoa sp. PS] Length = 216 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 11/187 (5%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP +S +GKR ++ +D +IY ++L S +RLTN I+ ++ D IVF SD Sbjct: 38 APAWSPDGKRLAFTLSQDGNPEIYVMNLYSRGLKRLTNHQAIDTEPEWASDGRTIVFTSD 97 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 R G+ Q+Y + NG +R++ SY P SP G +A SG + I V+ Sbjct: 98 RSGQPQIYRISVNGGKAQRLT--FHGSYNARPRLSPDGSQLAVLHSSGRGYKIAVITLKT 155 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG--RNETLINTPAYAS 438 Q ++L + + ++P+++P+G +I++ TGS+L ++ ++G R ++ A Sbjct: 156 GQMKVLSQTTLDESPSFAPNGSMIIYA------TGSELAAVSVDGRVRQRLSVDMNAQVR 209 Query: 439 DPQWVGF 445 +P W F Sbjct: 210 EPAWSPF 216 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ +++A+ D + +Y+M+ R KR+ N +++ P ++S+G+ + + Sbjct: 39 PAWSPDGKRLAFTLSQDGNP-EIYVMNL-YSRGLKRLTNHQAIDTEPEWASDGRTIVFTS 96 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI-VFESDREGKEQLYVMQSNG 335 + IY + + +RLT N SPD SQ+ V S G + + G Sbjct: 97 DRSGQPQIYRISVNGGKAQRLTFHGSYNARPRLSPDGSQLAVLHSSGRGYKIAVITLKTG 156 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA- 394 K +SQ P ++P G +I + S E A+ V DG + L D N Q Sbjct: 157 -QMKVLSQTTLDE--SPSFAPNGSMIIYATGS-ELAAVSV---DGRVRQRLSVDMNAQVR 209 Query: 395 -PTWSP 399 P WSP Sbjct: 210 EPAWSP 215 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 25/117 (21%) Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 ++ K + +Q G+ ++ K P WSP G +AFT + +DG Sbjct: 8 EKGAKRMVVYIQEIGTGRRTRVSAKPGLNAAPAWSPDGKRLAFT-----------LSQDG 56 Query: 381 SQE--------RLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + E R L +N QA P W+ GR+++F+ + G ++Y I +NG Sbjct: 57 NPEIYVMNLYSRGLKRLTNHQAIDTEPEWASDGRTIVFTSDRSGQ--PQIYRISVNG 111 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYAS 438 G + R+ + AP WSP G+ L F+ +DG+ ++Y ++L R + L N A + Sbjct: 24 GRRTRVSAKPGLNAAPAWSPDGKRLAFTLSQDGN--PEIYVMNLYSRGLKRLTNHQAIDT 81 Query: 439 DPQWV 443 +P+W Sbjct: 82 EPEWA 86 >gi|326559273|gb|EGE09701.1| tolB-like protein [Moraxella catarrhalis 103P14B1] gi|326573329|gb|EGE23297.1| tolB-like protein [Moraxella catarrhalis 101P30B1] Length = 420 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 20/357 (5%) Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS--SPA 149 TN D + W + G + ++ + + ++L + + + D + + S PA Sbjct: 76 TNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPA 135 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 S + ISD IYQ ITG+ D +I +V ES +SL ++D G IR L Sbjct: 136 SIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTV 195 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ P FSP+ +AY+ ++ +Y++ PK + F LAP FS +G Sbjct: 196 NGSII-TPTFSPDGLSIAYSVQTKNNLPLIYIVPVS-GGTPKLVTPFWGHNLAPSFSPDG 253 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 L S ++ +IY ++L +N + LT + +Y D+S ++ +D+ + Q Sbjct: 254 GSILFSGSHENNNPNIYRLNLHTNHLDTLTTLNGAENAPNYLADASGFIYTADKGTRRQS 313 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RL 385 LY + +I ASY +P SP G + + SG + I K Q R+ Sbjct: 314 LYRYDFGTTHSTQI-----ASYATNPRLSPDGSKLVY--LSGGQIIIANTKGHIQQSFRV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D + ++SPSG +I++ + + S+ N I T DP W Sbjct: 367 LGTDV---SASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRT--IPTSGTVRDPIW 418 >gi|148656049|ref|YP_001276254.1| WD40 domain-containing protein [Roseiflexus sp. RS-1] gi|148568159|gb|ABQ90304.1| WD40 domain protein beta Propeller [Roseiflexus sp. RS-1] Length = 567 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 80/164 (48%), Gaps = 5/164 (3%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DI+S DL LT + S S+SP +IVF S R LYVM+++GSD +R Sbjct: 43 AFDIFSADLAGERVVNLTADPHPDRSPSWSPAGDRIVFASRRASNWDLYVMRADGSDLRR 102 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNLQAPTWSP 399 +++ A +P WSP G IAFT + I + D G R+ S PTW+P Sbjct: 103 LTE-HPAYDGEPAWSPDGRQIAFTSMRDGQLDIYTLDLDSGDLRRITSHPSADSQPTWAP 161 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 GR L F+ + D+ ++Y D+ G L N PA P W Sbjct: 162 DGRRLAFTSWR--DSNQEIYITDVEGSTIVNLTNHPAPDHSPAW 203 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P +S G R + + ++ D+Y + + RLT + ++SPD QI F S Sbjct: 68 SPSWSPAGDRIVFASRRASNWDLYVMRADGSDLRRLTEHPAYDGEPAWSPDGRQIAFTSM 127 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R+G+ +Y + + D +RI+ A P W+P G +AFT + I + +GS Sbjct: 128 RDGQLDIYTLDLDSGDLRRITSHPSADS-QPTWAPDGRRLAFTSWRDSNQEIYITDVEGS 186 Query: 382 Q-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 L + +P WSP GR + F +DG G L+ DL Sbjct: 187 TIVNLTNHPAPDHSPAWSPDGRFIAFISDRDG--GGNLHIADL 227 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 22/288 (7%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQ 223 + + D RI+F + G + D G + LT P D+ P +SP Sbjct: 21 VHAAQQDGQGRIVFAASRGDGGAFD--IFSADLAGERVVNLTADPHPDR---SPSWSPAG 75 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 ++ +A+ + +Y+M R D + +R+ + P +S +G++ + +D + Sbjct: 76 DRIVFASRRASN-WDLYVM--RADGSDLRRLTEHPAYDGEPAWSPDGRQIAFTSMRDGQL 132 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++DL S R+T+ + +++PD ++ F S R+ +++Y+ GS ++ Sbjct: 133 DIYTLDLDSGDLRRITSHPSADSQPTWAPDGRRLAFTSWRDSNQEIYITDVEGSTIVNLT 192 Query: 343 QDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 + A P WSP G IAF + G I + G + R ++ L+ P W+P Sbjct: 193 -NHPAPDHSPAWSPDGRFIAFISDRDGGGNLHIADLVT-GEERRAGPDNLGLRDPAWTPG 250 Query: 401 GRSLIFSRKKDGD------TGSKLYSIDLNGRNETLINTPAYASDPQW 442 G + + G+ G L++ L+G + + Y + P W Sbjct: 251 GGLMAVAPWALGERRFFSRQGVALFTPGLSGGTFVVASVHGY-NRPAW 297 >gi|299138486|ref|ZP_07031665.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] gi|298599732|gb|EFI55891.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] Length = 445 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 109/456 (23%), Positives = 196/456 (42%), Gaps = 51/456 (11%) Query: 16 NLCLLLVLIGGFFPTSIHA---FVKVATNSANYSPVSIAFTKFVSIDELGGKVS--EVVS 70 N+ L VL S+HA F + A +++A K + D K + + Sbjct: 9 NVSLFAVLFASIAVPSMHAQDWFHLETSGGATRIRIAVANFKPQAGDPAAYKHTFDTTLF 68 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV-------IKEGKDR 123 DL + +F+++S+D P S P Q SL + DR Sbjct: 69 ADLTAAGLFDMVSKDMI------PQSTPGTQAEISLAQWSAAPASAAMIAFGNVGVANDR 122 Query: 124 LRVEFRLWDVKDRK--QIIGKKF--FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 L V L D K+ + Q+ K++ +S S R+IAH +D+I + G ++ Sbjct: 123 LVVNGFLDDAKNAQYPQVFAKQYNEAASDDSARQIAHRFADEIIARLGGGVSGIAETKIY 182 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 S+ +G + MD DGAN +T I PR SP+ +VA+++ +D ++ Sbjct: 183 YSKRTGTG---KEIWEMDYDGANQHEIT-HLGAISISPRVSPDNSRVAFSSLG-KDGFQI 237 Query: 240 YLMDTRIDRAPKRIGNFRSMI---LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + + R+ NF S ++P ++ +G++ S + +I+ D + + Sbjct: 238 KMYSLLL----GRLVNFTSAGGTNVSPAWAPSGQQLAFSSSRTGDPEIWISDPEGRVAHK 293 Query: 297 LTNTLFINISASYSPDSS-QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +T+ + ++S +++P + QI + S R QLY+M ++GS +R++ A+ P WS Sbjct: 294 ITSFIGPDVSPTWNPKTGGQIAWISGRTHLPQLYIMDADGSGVQRLTDGGYAT--SPSWS 351 Query: 356 PQGDLIAFTKFSGEKFAIG--------VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF 406 P G + F K+ G VM+ + L D P+WSP GR ++F Sbjct: 352 PNGQFLTFAW--DRKYGPGAPGGQDIYVMEIASKKWIQLTHDIGPCDFPSWSPDGRHIVF 409 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + T ++ S+ +G + + T A + P W Sbjct: 410 ANGNGAHT--RIMSMLADGTQKQAL-TGAGSDMPNW 442 >gi|301513293|ref|ZP_07238530.1| translocation protein TolB [Acinetobacter baumannii AB058] Length = 258 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 120/236 (50%), Gaps = 28/236 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L + D DG + + SRD IL P ++P+ +K+AY +++ + +YL D + Sbjct: 9 TLQIADTDGEQPKTVLSSRDPIL-SPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGTR-E 65 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ A Y+P Sbjct: 66 VLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTEARYTP 125 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D +F SDR G Q+Y KR++ F ++ +G L A G+K Sbjct: 126 DGKAFIFTSDRGGSPQIYRYDFGNGSVKRLT-------FKGSFNARGTLSA----DGKKI 174 Query: 372 AIGVMKKDGSQERLLVEDSNL------------QAPTWSPSGRSLIFSRKKDGDTG 415 A+ V + GS ++ ++D N ++P++SP+G+ ++++ ++G+ G Sbjct: 175 AL-VHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYA-TREGNRG 228 >gi|326567863|gb|EGE17964.1| tolB-like protein [Moraxella catarrhalis 12P80B1] Length = 420 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 20/357 (5%) Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS--SPA 149 TN D + W + G + ++ + + ++L + + + D + + S PA Sbjct: 76 TNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPA 135 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 S + ISD IYQ ITG+ D +I +V ES +SL ++D G IR L Sbjct: 136 SIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTV 195 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ P FSP+ +AY+ ++ +Y++ PK + F LAP FS +G Sbjct: 196 NGSII-TPTFSPDGLSIAYSVQTKNNLPIIYIVSVS-GGTPKLVTPFWGHNLAPSFSPDG 253 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 L S ++ +IY ++L +N + LT + +Y D+S ++ +D+ + Q Sbjct: 254 GSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRHQS 313 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RL 385 LY + +I ASY +P SP G + + SG + I K Q R+ Sbjct: 314 LYRYDFGTTHSTQI-----ASYATNPRLSPDGSKLVY--LSGGQIIIANTKGRIQQSFRV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D + ++SPSG +I++ + + S+ N I T DP W Sbjct: 367 LGTDV---SASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRT--IPTSGTVRDPIW 418 >gi|91793532|ref|YP_563183.1| WD-40-like beta propeller repeat-containing protein [Shewanella denitrificans OS217] gi|91715534|gb|ABE55460.1| WD40-like beta Propeller [Shewanella denitrificans OS217] Length = 292 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA-TYDDEDIL---RVYLMDTRID 247 S+ M+ DG N + LT +++ P +SP+ +K+ +A Y D + + ++LM+ Sbjct: 88 SIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFAREYKDPEGVFQAEIWLMNADGS 147 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + +I + + P F+ +G+ S D+ +I ++ + +LT+ Sbjct: 148 KQ-TQIESLKGS--NPHFTPDGRIVFSSEFNDKKSEISIANIDGSKVIQLTDNEAEEWHP 204 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD I F S R+G +++YVM S+GS+QKR++ + F P WSP I FT F+ Sbjct: 205 EVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKRLTFNNVGDSF-PSWSPDSSEILFTHFA 263 Query: 368 GEKFAIGVMKKDGSQERLLV 387 + I +M KDGS R ++ Sbjct: 264 DTGWDIYIMNKDGSSSRKIL 283 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 10/213 (4%) Query: 219 FSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ +K+A Y DD ++ M++ + P +S +GK+ + + + Sbjct: 68 WSPDGKKIAVRQYHDDGKTWSIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFARE 127 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISAS---YSPDSSQIVFESD-REGKEQLYVMQS 333 + ++ ++ + T ++ S ++PD +IVF S+ + K ++ + Sbjct: 128 YKDPEGVFQAEIWLMNADGSKQTQIESLKGSNPHFTPDG-RIVFSSEFNDKKSEISIANI 186 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNL 392 +GS +++ D EA + P SP G IAF I VM DGS Q+RL + Sbjct: 187 DGSKVIQLT-DNEAEEWHPEVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKRLTFNNVGD 245 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 P+WSP ++F+ DTG +Y ++ +G Sbjct: 246 SFPSWSPDSSEILFTHF--ADTGWDIYIMNKDG 276 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/270 (21%), Positives = 119/270 (44%), Gaps = 48/270 (17%) Query: 107 GAQVLVTGRVIKEGKDRLRV-----EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 G+++ +T R EG+ + + ++ W D K+I +++ +W HT++ D Sbjct: 42 GSKIYLTDR---EGQSSINIPNVTGDYVTWS-PDGKKIAVRQYHDDGKTWS--IHTMNSD 95 Query: 162 --IYQSITGEKGDFNS---------RILFVSE-SVVSGIIKNSLCVMDRDGANIR----- 204 ++ +T EK ++S +I+F E G+ + + +M+ DG+ Sbjct: 96 GTNWKRLTHEKNKWDSVPAWSPDGKKIVFAREYKDPEGVFQAEIWLMNADGSKQTQIESL 155 Query: 205 -----YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 + TP +I+F F+ + +++ A D +++ L D + Sbjct: 156 KGSNPHFTPD-GRIVFSSEFNDKKSEISIANIDGSKVIQ--LTDNEAEE----------- 201 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK ++D +IY ++ + +RLT + S+SPDSS+I+F Sbjct: 202 -WHPEVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKRLTFNNVGDSFPSWSPDSSEILFT 260 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + +Y+M +GS ++I ++A + Sbjct: 261 HFADTGWDIYIMNKDGSSSRKILSGRDAMF 290 >gi|326566623|gb|EGE16765.1| tolB-like protein [Moraxella catarrhalis BC1] gi|326576855|gb|EGE26761.1| tolB-like protein [Moraxella catarrhalis O35E] Length = 420 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 20/357 (5%) Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS--SPA 149 TN D + W + G + ++ + + ++L + + + D + + S PA Sbjct: 76 TNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPA 135 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 S + ISD IYQ ITG+ D +I +V ES +SL ++D G IR L Sbjct: 136 SIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTV 195 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ P FSP+ +AY+ ++ +Y++ PK + F LAP FS +G Sbjct: 196 NGSII-TPTFSPDGLSIAYSVQTKNNLPIIYIVSVS-GGTPKLVTPFWGHNLAPSFSPDG 253 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 L S ++ +IY ++L +N + LT + +Y D+S ++ +D+ + Q Sbjct: 254 SSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQS 313 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RL 385 LY + +I ASY +P SP G + + SG + I K Q R+ Sbjct: 314 LYRYDFGTTHSTQI-----ASYATNPRLSPDGSKLVY--LSGGQIIIANTKGRIQQSFRV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D + ++SPSG +I++ + + S+ N I T DP W Sbjct: 367 LGTDV---SASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRT--IPTSGTVRDPIW 418 >gi|326560194|gb|EGE10582.1| tolB-like protein [Moraxella catarrhalis 7169] gi|326564933|gb|EGE15135.1| tolB-like protein [Moraxella catarrhalis 46P47B1] gi|326570295|gb|EGE20340.1| tolB-like protein [Moraxella catarrhalis BC8] gi|326575773|gb|EGE25696.1| tolB-like protein [Moraxella catarrhalis CO72] Length = 420 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 20/357 (5%) Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS--SPA 149 TN D + W + G + ++ + + ++L + + + D + + S PA Sbjct: 76 TNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPA 135 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 S + ISD IYQ ITG+ D +I +V ES +SL ++D G IR L Sbjct: 136 SIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTV 195 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ P FSP+ +AY+ ++ +Y++ PK + F LAP FS +G Sbjct: 196 NGSII-TPTFSPDGLSIAYSVQTKNNLPIIYIVSVS-GGTPKLVTPFWGHNLAPSFSPDG 253 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 L S ++ +IY ++L +N + LT + +Y D+S ++ +D+ + Q Sbjct: 254 GSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQS 313 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RL 385 LY + +I ASY +P SP G + + SG + I K Q R+ Sbjct: 314 LYRYDFGTTHSTQI-----ASYATNPRLSPDGSKLVY--LSGGQIIIANTKGRIQQSFRV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D + ++SPSG +I++ + + S+ N I T DP W Sbjct: 367 LGTDV---SASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRT--IPTSGTVRDPIW 418 >gi|167946735|ref|ZP_02533809.1| TolB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 286 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%) Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL RS F ++ ++ ++ D + F+DW LG + LV G++ G V F Sbjct: 1 ISADLHRSGRFKVLPREDLLALPSSGDEV-EFKDWRILGVENLVVGQIQPNGPGGYIVRF 59 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV-SESVVSG 187 +L+DV +Q+ G ++ + R AH ++D IY+ + G KG F +RI ++ S+ +G Sbjct: 60 QLFDVFRGEQLTGYSIPTTAPNLRSTAHHVADLIYEVLLGMKGAFATRIAYITSQQGANG 119 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +L V D DG N + S + L P +SP+ +K+AY ++++ Sbjct: 120 EQQVALRVADADGHNPETIV-SSSEPLMSPAWSPDGRKIAYVSFEN 164 >gi|213582179|ref|ZP_03364005.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 172 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 4/174 (2%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +++ +TG KG F +RI +V ++ G L V D DG N +++ Q L P +SP Sbjct: 1 VFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSP 58 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + K+AY T+ E ++ T + A +++ +F AP FS +G + ++ K + Sbjct: 59 DGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGS 116 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M NG Sbjct: 117 LNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNING 170 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +S ++SPD S++ + + G+ L + +NG+ ++ S + P +SP G +AF Sbjct: 52 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG--APAFSPDGTKLAF 109 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + VM Q R + + SN PTW P ++L F+ + G ++Y ++ Sbjct: 110 ALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGR--PQVYKMN 167 Query: 423 LNG 425 +NG Sbjct: 168 ING 170 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 17/129 (13%) Query: 329 YVMQSNGSD---QKRISQDKEASYF----------DPVWSPQGDLIAFTKFSGEKFAIGV 375 YV+Q+NG + R+S + F P WSP G +A+ F + A+ + Sbjct: 18 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI 77 Query: 376 MK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT 433 +G+ ++ + AP +SP G L F+ K G LY +DL +G+ + + Sbjct: 78 QTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSL--NLYVMDLASGQIRQITDG 135 Query: 434 PAYASDPQW 442 + ++P W Sbjct: 136 RSNNTEPTW 144 >gi|58700237|ref|ZP_00374719.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533245|gb|EAL57762.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 226 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 20/219 (9%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ ++ +S + W S +VT + + L + FRL+D Sbjct: 67 CGLFNV-------KRGAEAES----KSWKS---DTVVTVSLSEISGSALELSFRLFDTFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 VM++DG+NI+YLT D+ + PRFSPN + + Y +Y + Sbjct: 173 VMNQDGSNIKYLTNG-DRFVSTPRFSPNGKGIVYISYAN 210 >gi|213423404|ref|ZP_03356391.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 267 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 47/268 (17%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +V ++ G L V D DG N +++ Q L P +SP+ K+AY T+ E Sbjct: 2 TRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF--E 57 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S Sbjct: 58 SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQI 117 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----SQDKEA--- 347 ++T+ N ++ PDS + F SD+ G+ Q+Y M NG +RI SQ+++A Sbjct: 118 RQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQDADVS 177 Query: 348 ---------------------------------SYFD--PVWSPQGDLIAFTKFSGEKFA 372 ++ D P +P G ++ ++ G Sbjct: 178 SDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSV 237 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + ++ DG + RL D +++P WSP Sbjct: 238 LNLVSTDGRFKARLPATDGQVKSPAWSP 265 >gi|116619651|ref|YP_821807.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222813|gb|ABJ81522.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 464 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 143/318 (44%), Gaps = 27/318 (8%) Query: 138 QIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 Q+IG ++ S A RK+AH + +I + G K F + I F S SG + Sbjct: 159 QVIGNRYLGSVDEAGARKVAHEFAAEIV-GLFGGKSLFGTHIYFSSNR--SG--HKEIWA 213 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIG 254 MD DG N R +T + I P SP+ K+A+ ++ + + ++ +D D + Sbjct: 214 MDPDGKNQRQIT-RFNSISTYPNVSPDGTKIAFTSWVKGQPAIFIFSVDPVRDL--RFYN 270 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPD 312 S+ A F+ +GK+ + + + I+ +L +++ I + +P Sbjct: 271 QTASVNQAGSFTPDGKQIVYASSAGNGICCRIFIANLDGTGFRPISSPSAIEVEPKVNPK 330 Query: 313 S-SQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEK 370 + + IVF S R G +Q+Y M +G+D +R++ EAS +P W P G IAF G Sbjct: 331 TGADIVFSSGRSGPQQIYRMNMDGADVERLTPGVGEAS--NPSWHPDGQHIAFAWTQGYA 388 Query: 371 ------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + V ++ Q L D + P W+P G ++F++ + S++Y++ N Sbjct: 389 TGAFNIFTMNVATREYVQ--LTHGDGKNENPNWAPDGVHIVFAKTRGNS--SQIYTMLAN 444 Query: 425 GRNETLINTPAYASDPQW 442 G + T P W Sbjct: 445 GTQIQQLTTAGQNERPVW 462 >gi|239906030|ref|YP_002952769.1| putative TolB protein precursor [Desulfovibrio magneticus RS-1] gi|239795894|dbj|BAH74883.1| putative TolB protein precursor [Desulfovibrio magneticus RS-1] Length = 441 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 166/385 (43%), Gaps = 19/385 (4%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNP--DSIPRFQDWNSLGAQVLVTGRVIKEGK 121 K+ ++++KDLQ ++ Q S ++ D I F+ + VLVT G Sbjct: 65 KLQDLINKDLQFLPFLQIVPQSSVPGQVAGATADQI-DFKPFGLAKIDVLVTAN-WTPGG 122 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + VE R ++V +K ++GK + + + A IA ++ Q++TG+ G FNS+I FV Sbjct: 123 NLGNVELRAFEVYSQKVLVGKGYDAVTDAQLPDIADRFCMELMQALTGQGGFFNSQIAFV 182 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILRV 239 S G + + G + +T + + P +S + +++ + Sbjct: 183 KPSAGKGA---DIWTVRPTGRGLNRVTNYNELGMAVSPSWSFDGRRIVFTLIGSRGH--- 236 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL P+ + +++P F +G+ A +S+ DIY ++ + L + Sbjct: 237 YLGVWSGGGKPQVYTLPSTNVVSPHFLPDGQVA-VSLTMHGKADIYLLNSAYQPGQPLVS 295 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I +S +++ + + SD G +YV +G +R++ + +P SP G Sbjct: 296 GSGIEVSPTFAASGGAMAYVSDGTGSPNIYVTTVHGGAGRRVTTSGYNT--NPSMSPDGK 353 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKL 418 LIAFTK G + VM QE + + P++SP G + FS + G K+ Sbjct: 354 LIAFTKQLGGAQKVFVMDLATGQETQVTSGGGSDENPSFSPDGYFIAFSSTRSGQ--KKI 411 Query: 419 YSIDLNGRNETLINTP-AYASDPQW 442 + +G +I T A P W Sbjct: 412 FVTTRHGAPPVMIPTGDGAAYMPSW 436 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S I P F+ + +AY + D +Y+ T + R P S + Sbjct: 295 SGSGIEVSPTFAASGGAMAYVS-DGTGSPNIYV--TTVHGGAGRRVTTSGYNTNPSMSPD 351 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK + Q A ++ +DL + ++T+ + + S+SPD I F S R G++++ Sbjct: 352 GKLIAFTKQLGGAQKVFVMDLATGQETQVTSGGGSDENPSFSPDGYFIAFSSTRSGQKKI 411 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSP 356 +V +G+ I A+Y P W P Sbjct: 412 FVTTRHGAPPVMIPTGDGAAYM-PSWGP 438 >gi|297183216|gb|ADI19356.1| periplasmic component of the tol biopolymer transport system [uncultured Chloroflexi bacterium HF0500_03M05] Length = 284 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 13/254 (5%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L VM+ G + R + S +P++SPN ++AY + E+ +Y+++ P Sbjct: 41 ALEVMEVSGTS-RQVLASASGTHRDPQWSPNDIRIAYIAENGEETY-LYVINAN-GTQPM 97 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + + +S +G + +V + E IY + R T+T + S +S Sbjct: 98 LLTSVPGNEIG-GWSPDGTSVVFAVSEGEEQGIYIRNPDGVNEFRRTDTP--DFSPVWST 154 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGE 369 DS +I F S R+G ++YVM ++GS+Q R+++ EA +D WSP G+ + F + Sbjct: 155 DSERIAFLSRRDGNPEIYVMNTDGSNQFRLTE-TEALEYDISWSPNGERLLFVSERDGNA 213 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + I ++ D SQ RL + + P WSP+G + F+ D DT +++ +D +G N+T Sbjct: 214 EIYIAELESD-SQVRLTHNEVKDEHPVWSPNGDKIAFTSHLDADT--EIFIMDSDGDNQT 270 Query: 430 -LINTPAYASDPQW 442 L N + ++P W Sbjct: 271 RLTNNESEDTNPSW 284 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 13/190 (6%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 I G D S + VSE GI + + DG N T + D F P +S + ++ Sbjct: 107 IGGWSPDGTSVVFAVSEGEEQGI-----YIRNPDGVNEFRRTDTPD---FSPVWSTDSER 158 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +A+ + D + +Y+M+T D + + R+ ++ +S NG+R L ++D +I Sbjct: 159 IAFLSRRDGN-PEIYVMNT--DGSNQFRLTETEALEYDISWSPNGERLLFVSERDGNAEI 215 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y +L+S++ RLT+ + +SP+ +I F S + ++++M S+G +Q R++ + Sbjct: 216 YIAELESDSQVRLTHNEVKDEHPVWSPNGDKIAFTSHLDADTEIFIMDSDGDNQTRLT-N 274 Query: 345 KEASYFDPVW 354 E+ +P W Sbjct: 275 NESEDTNPSW 284 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +D + LT + S S D + F S L VM+ +G+ +++ Sbjct: 1 MDSDGTSARNLTKSAIDEFSPVVSSDGKLVAFLSGSGDNIALEVMEVSGT-SRQVLASAS 59 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 ++ DP WSP IA+ +GE+ + V+ +G+Q LL + WSP G S++F Sbjct: 60 GTHRDPQWSPNDIRIAYIAENGEETYLYVINANGTQPMLLTSVPGNEIGGWSPDGTSVVF 119 Query: 407 SRKKDGDTGSKLYSIDLNGRNE-----TLINTPAYASDPQWVGFM 446 + + + G +Y + +G NE T +P +++D + + F+ Sbjct: 120 AVSEGEEQG--IYIRNPDGVNEFRRTDTPDFSPVWSTDSERIAFL 162 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 6/183 (3%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +P SS+GK + + + +++ + + L + + +SP+ +I + + Sbjct: 19 FSPVVSSDGKLVAFLSGSGDNIALEVMEVSGTSRQVLASASGTHRDPQWSPNDIRIAYIA 78 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + + LYV+ +NG+ ++ WSP G + F GE+ I + DG Sbjct: 79 ENGEETYLYVINANGTQPMLLTSVPGNEIGG--WSPDGTSVVFAVSEGEEQGIYIRNPDG 136 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASD 439 E + + +P WS + F ++DG+ ++Y ++ +G N+ L T A D Sbjct: 137 VNEFRRTDTPDF-SPVWSTDSERIAFLSRRDGN--PEIYVMNTDGSNQFRLTETEALEYD 193 Query: 440 PQW 442 W Sbjct: 194 ISW 196 >gi|296113200|ref|YP_003627138.1| tolB-like protein [Moraxella catarrhalis RH4] gi|295920894|gb|ADG61245.1| tolB-like protein [Moraxella catarrhalis RH4] Length = 420 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 91/357 (25%), Positives = 155/357 (43%), Gaps = 20/357 (5%) Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS--SPA 149 TN D + W + G + ++ + + ++L + + + D + + S PA Sbjct: 76 TNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPA 135 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 S + ISD IYQ ITG+ D +I +V ES +SL ++D G IR L Sbjct: 136 SIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTV 195 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ + FSP+ +AY+ ++ +Y++ PK + F LAP FS +G Sbjct: 196 NGSIITQ-TFSPDGLSIAYSVQTKNNLPIIYIVSVS-GGTPKLVTPFWGHNLAPSFSPDG 253 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 L S ++ +IY ++L +N + LT + +Y D+S ++ +D+ + Q Sbjct: 254 GSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQS 313 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RL 385 LY + +I ASY +P SP G + + SG + I K Q R+ Sbjct: 314 LYRYDFATTHSTQI-----ASYATNPRLSPDGSKLVY--LSGGQIIIANTKGRIQQSFRV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D + ++SPSG +I++ + + S+ N I T DP W Sbjct: 367 LGTDV---SASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRT--IPTSGTVRDPIW 418 >gi|256828400|ref|YP_003157128.1| WD40 domain-containing protein beta Propeller [Desulfomicrobium baculatum DSM 4028] gi|256577576|gb|ACU88712.1| WD40 domain protein beta Propeller [Desulfomicrobium baculatum DSM 4028] Length = 439 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 145/337 (43%), Gaps = 16/337 (4%) Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITG 168 VLVT VE R ++V + I+GK + ++ ++A D+ +++TG Sbjct: 112 VLVTAAWAPRPGGVGEVELRAYEVYTGRLIVGKGYGVANNQQIPEVAARFCADLMEALTG 171 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 + F S I FV + + + + G N++ +T + D I P +S + QK+ + Sbjct: 172 QGDFFRSNIAFVKKEGQ----RKQVYMATAQGLNLQKIT-NLDGIAVSPAWSHDGQKLVF 226 Query: 229 ATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 D + L V+ TR + GN ++AP F+ G A IS+ DIY + Sbjct: 227 VFLDKKYHNLCVWDRQTRTLDKKRLPGN---TLIAPAFTKTGNVA-ISLDMRGNPDIYEL 282 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + + L I+I + ++VF S+R G +++ KRIS + Sbjct: 283 NSEYKVVRPLEENWGIDIGPDFDRSGEKMVFVSNRLGNPHVFLKNMVTGQSKRISLTGKY 342 Query: 348 SYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + P SP G + F + +G V G + +L + + PTWSP G + F Sbjct: 343 NT-GPSISPDGSQVVFAQMVNGNHKLFLVDLASGHERQLTFGPGSDEDPTWSPDGYFIAF 401 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 + + G SK+Y +G LI T P A+ P W Sbjct: 402 ASNRSGP--SKIYLTTKHGDEPILIPTGPGEATSPAW 436 >gi|326571032|gb|EGE21056.1| tolB-like protein [Moraxella catarrhalis BC7] Length = 420 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 91/357 (25%), Positives = 154/357 (43%), Gaps = 20/357 (5%) Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS--SPA 149 TN D + W + G + ++ + + ++L + + + D + + S PA Sbjct: 76 TNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPA 135 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 S + ISD IYQ ITG+ D +I +V ES +SL ++D G IR L Sbjct: 136 SIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTV 195 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ P FS + +AY+ ++ +Y++ PK + F LAP FS +G Sbjct: 196 NGSII-TPTFSSDGLSIAYSVQTKNNLPIIYIVSVS-GGTPKLVTPFWGHNLAPSFSPDG 253 Query: 270 KRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 L S ++ +IY ++L +N + LT + +Y D+S ++ +D+ + Q Sbjct: 254 GSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGARRQS 313 Query: 328 LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RL 385 LY + +I ASY +P SP G + + SG + I K Q R+ Sbjct: 314 LYRYDFGTTHSTQI-----ASYATNPRLSPDGSKLVY--LSGGQIIIANTKGRIQQSFRV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D + ++SPSG +I++ + + S+ N I T DP W Sbjct: 367 LGTDV---SASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRT--IPTSGTVRDPIW 418 >gi|327399145|ref|YP_004340014.1| WD40-like beta Propeller containing protein [Hippea maritima DSM 10411] gi|327181774|gb|AEA33955.1| WD40-like beta Propeller containing protein [Hippea maritima DSM 10411] Length = 421 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 167/375 (44%), Gaps = 30/375 (8%) Query: 37 KVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFK----QK 90 K+ ++ Y P++I FV + + + + +DL+ S +F+ F K Sbjct: 24 KIEISNPKYKPINIGLWGFVKNTPTSISKRFLSTLKRDLKVSGLFSWDETQHFSYDAPSK 83 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 + N I + + ++ G EGK + V R+ DV + K + ++ S Sbjct: 84 VVN--GIAKLDN-----LDYVIYGDAYIEGKS-IYVNVRITDVLKNSVLFEKTYTTNEYS 135 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILF-VSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 +A+ + D + +TG G F S+I F + + VS I V D +G N+ +T Sbjct: 136 LGWLANRVVDVLIGYVTGVYGPFESKIAFALGDGRVSDI-----YVCDFNGENVVRITNW 190 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + + S ++ Y + +L + + K N I A R+ G Sbjct: 191 HNFNILPKWVSDDELTFLSYRYGKPAL---FLFNVFSGKLSKLFSNSNLSISASRYM--G 245 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 A I + +++IY+V+ + ++LTN IN+S +++PD S++VF S+R G Q+Y Sbjct: 246 YFA-IPFNRFGSVNIYAVNARGRVIKKLTNDPSINVSPTFTPDFSKMVFVSNRGGNPQIY 304 Query: 330 V--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + S S + K S P SP G IA+ + VM DGS +R+++ Sbjct: 305 IKDLSSFDSPVRLTFNGKYNS--SPAVSPDGKKIAYISIDNGTTYLKVMNIDGSNDRVVM 362 Query: 388 EDSNLQAPTWSPSGR 402 + ++L +P+W+ R Sbjct: 363 KGNSLDSPSWAYDSR 377 >gi|121591680|ref|ZP_01678914.1| tolB protein [Vibrio cholerae 2740-80] gi|121546465|gb|EAX56689.1| tolB protein [Vibrio cholerae 2740-80] Length = 265 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 31/252 (12%) Query: 17 LCLLLVLIG-GFFPTSIHAFVKVATNSANYS-PVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 L +L+LIG GF + A V T+ + + P++I K+ +L VS V++ DLQ Sbjct: 5 LVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQ 64 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV- 133 RS F+ + Q + + + F W S+G L+TG + + + + ++L D+ Sbjct: 65 RSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIV 123 Query: 134 -------------KDRKQIIGK------KFFSSPAS-WRKIAHTISDDIYQSITGEKGDF 173 +D + ++ K K + PAS R+ AH I+D +Y+ +TGE+G F Sbjct: 124 RGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAF 183 Query: 174 NSRILFVSESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +RI +V VV+ L + D DG N R + S+ Q L P +SP+ Q +AY ++ Sbjct: 184 LTRIAYV---VVNDKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSF 239 Query: 232 DDEDILRVYLMD 243 + +Y+M+ Sbjct: 240 QNGQA-EIYMMN 250 >gi|149923449|ref|ZP_01911853.1| tolB protein [Plesiocystis pacifica SIR-1] gi|149815701|gb|EDM75228.1| tolB protein [Plesiocystis pacifica SIR-1] Length = 432 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 164/390 (42%), Gaps = 40/390 (10%) Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 GK+ +++ K+ Q S F +I + S + + + W+ +G +V + E Sbjct: 67 GKLGDLLRKNAQISAGFEVIPRRSLPGSLVRATGFNK-KAWSDIGNVDVVI--LTSEAGS 123 Query: 123 RLRVEFRLWDV-KDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFV 180 ++R+ ++++ K K ++ K + PA A+ +++ T E G F SRI FV Sbjct: 124 QIRIA--MYELSKGDKPVLSKGY---PAGDPLGAANKFMNEVINYYTKEPGVFGSRIAFV 178 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 KN V +G +T +R + P P + V + +Y + Sbjct: 179 RTRRNPTTSKNVYTVQ-MNGEATSAVTANRSLNIL-PSMGPGGE-VVFTSYAKRN----- 230 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 D I PKR+ + + L S +G +++ KD +IY++D N RLT Sbjct: 231 -PDLWISNGPKRVSKYPGLNLGGAVSPDGGTIALALSKDGNAEIYTIDRSGNIKNRLTKN 289 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGD 359 I+ S+S QI F SDR G Q+Y M ++G R++ K+ SY P WS Sbjct: 290 PAIDGQPSWS-GGGQIAFVSDRAGGPQVYRMSASGGGASRVT--KQGSYNQSPDWSQGAG 346 Query: 360 LIAFTKFSGEK-------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + +SG F + V K G RL PT+SP GR + +++ Sbjct: 347 RGQWIVYSGRDSSNRYDIFKVDV--KSGKVVRLTQSPGRNLDPTFSPDGRWVAYNQ---- 400 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 G +Y + +G N I AS P W Sbjct: 401 --GGSIYVANEDGNNNVEI--AKGASTPDW 426 >gi|158339964|ref|YP_001521134.1| WD-40-like beta propeller repeat-containing protein [Acaryochloris marina MBIC11017] gi|158310205|gb|ABW31820.1| WD40-like Beta Propeller, putative [Acaryochloris marina MBIC11017] Length = 344 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/280 (26%), Positives = 141/280 (50%), Gaps = 31/280 (11%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYD 232 +R+ F+S+ +G ++ L +++ DG+ + LT +RD+ +P +SP+ Q + + + Sbjct: 76 TRLAFISDR--NG--QSDLYLINLDGSQLTRLTSHAARDE---DPAWSPDSQHITFVSKR 128 Query: 233 DEDI-----LRVYLM---DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 D + +YL+ D+ I R + +G S P +S +G++ + S + + D+ Sbjct: 129 DANQQHPYNTEIYLLNIKDSEIKRLTEHVGEDSS----PSWSPDGQQIVFSRKIQDNADL 184 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + + + ++LT+ + +A +SPD QIVF S R LYV+ ++GS+ KR++QD Sbjct: 185 FLMTPEGTEFKQLTDDPNDDWNADWSPDGQQIVFTSGRSNNVDLYVINADGSNLKRLTQD 244 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRS 403 E WSP G IA+ S ++ + + +G+ + D L+ A W P+ Sbjct: 245 PEDEN-QGRWSPSGHRIAYISLSQNQWDLYTILPNGTGRTRVTNDDALELAFDWLPNSNK 303 Query: 404 LIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQW 442 ++F KDG +Y ++ G + + + + P S P W Sbjct: 304 ILF-ESKDG-----IYQANVIGSKKQQMTDNPKDGS-PTW 336 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 11/209 (5%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +A+ D++ ++LM T KR+ +P +S +G R ++ D+Y Sbjct: 33 IAFTGEQDKNNRDIFLM-TADGSNRKRLTTHPGEDWSPVWSPDGTRLAFISDRNGQSDLY 91 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ------LYVMQSNGSDQK 339 ++L + RLT+ + ++SPDS I F S R+ +Q +Y++ S+ K Sbjct: 92 LINLDGSQLTRLTSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNTEIYLLNIKDSEIK 151 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+++ P WSP G I F++ + + +M +G++ + L +D N WS Sbjct: 152 RLTE-HVGEDSSPSWSPDGQQIVFSRKIQDNADLFLMTPEGTEFKQLTDDPNDDWNADWS 210 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 P G+ ++F+ + + LY I+ +G N Sbjct: 211 PDGQQIVFTSGRSNNV--DLYVINADGSN 237 >gi|258405705|ref|YP_003198447.1| WD40 domain-containing protein beta Propeller [Desulfohalobium retbaense DSM 5692] gi|257797932|gb|ACV68869.1| WD40 domain protein beta Propeller [Desulfohalobium retbaense DSM 5692] Length = 437 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/327 (25%), Positives = 147/327 (44%), Gaps = 28/327 (8%) Query: 126 VEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 VE RL+DV ++ ++GK + +A +I ++ G F SR+ FV ++ Sbjct: 124 VELRLFDVFSQRLMLGKGYRIMDQEQVDVVADRFCAEIVDTLAGNGDVFRSRLAFVRQNS 183 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + I ++ V RD I L + + P +S + +++A+ TY DE R+ L D Sbjct: 184 TAKNIW-TVGVQGRDPKQITRL----EGVSMSPAWSWDGRRMAF-TYLDERRHRLGLWD- 236 Query: 245 RIDRAPKRIGNFRSMIL------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + G ++M+L +P FS G+ ++S+ DI+++ L Sbjct: 237 ------RDAGQIKAMVLPGNTLISPVFSPQGQ-VVLSLDPYGNPDIFTLSDDWTIESPLV 289 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQ 357 I+IS + ++VF S R G ++V + + +R+S E +Y P SP Sbjct: 290 RHWGIDISPQFDEKGEKMVFVSSRLGNPHIFVRDMDSGEVERVS--FEGTYNTSPTISPD 347 Query: 358 GDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G +A+++ + + I V + G+ ++ N + PTW+P G L FS + G Sbjct: 348 GRFVAYSRRTDDGHRIVVHDLESGASRQITKGPGNDEDPTWAPDGYFLAFSSNRSGTY-- 405 Query: 417 KLYSIDLNGRNETLINT-PAYASDPQW 442 KLY NG I T P A+ P W Sbjct: 406 KLYLTTRNGDTPKQIPTGPGAATAPAW 432 >gi|114321544|ref|YP_743227.1| WD40 domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227938|gb|ABI57737.1| WD40 domain protein beta Propeller [Alkalilimnicola ehrlichii MLHE-1] Length = 352 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 L ++ A IYS L A RLT+ ++ +SPD +I F S R+G +Y+M Sbjct: 35 LFVSNQEGAQSIYSASLNDGAIVRLTDPAHSDMDPRWSPDRQRIAFVSRRDGNGDIYLMD 94 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SN 391 ++GS+Q+R++ + + P W P GD +AFT + ++ + RLL E + Sbjct: 95 ADGSNQQRLTHSERMDFM-PQWHPSGDYLAFTSSRVSPRGVFLLDLATGEARLLSEAVRS 153 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 +A WSP G L + G+ G+ + IDL +++ Sbjct: 154 PEALRWSPDGGQLAVIARPGGEGGNAIMVIDLEDDGHSIL 193 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/281 (21%), Positives = 122/281 (43%), Gaps = 22/281 (7%) Query: 177 ILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +LFVS + I SL DGA +R P+ + +PR+SP++Q++A+ + D + Sbjct: 34 VLFVSNQEGAQSIYSASL----NDGAIVRLTDPAHSDM--DPRWSPDRQRIAFVSRRDGN 87 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +YLMD +R+ + M P++ +G + + ++ +DL + Sbjct: 88 G-DIYLMDADGSNQ-QRLTHSERMDFMPQWHPSGDYLAFTSSRVSPRGVFLLDLATGEAR 145 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR---ISQDKEASYFDP 352 L+ + + +SPD Q+ + G+ +M + D + D+ A Sbjct: 146 LLSEAVRSPEALRWSPDGGQLAVIARPGGEGGNAIMVIDLEDDGHSILVPNDRHAGNVQS 205 Query: 353 V-WSPQGDLIAFTKFSGEKFAIG---VMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFS 407 + W P GD +A+T + + + + ++G E++ N++ P WS G L+++ Sbjct: 206 LAWHPSGDYLAYTASTDNRREVQLYVLHVQEGHSEQVASAPGNVRGFPVWSTDGDWLVYA 265 Query: 408 RKKDG---DTGSKLYSIDL--NGRNETLINTPAYASDPQWV 443 +T + +Y+ +GR T+ + P W+ Sbjct: 266 STATPAPEETKTNIYASRFPDDGRPVTVATLDGQLAQPVWL 306 >gi|94970959|ref|YP_593007.1| WD-40-like beta propeller repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94553009|gb|ABF42933.1| WD40-like beta Propeller [Candidatus Koribacter versatilis Ellin345] Length = 298 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 31/258 (12%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYL 241 SVV+G K L + DG N LT RD E P +SP+ + VA+ E + +++L Sbjct: 53 SVVAG--KEQLFRVGLDGKNPLQLT--RDDADHEDPAWSPDGKHVAFVLIH-EKVEQIHL 107 Query: 242 MDTR----IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA------MDIYSVDLQS 291 MD PK S + P +S + +R + D A DI ++D+ + Sbjct: 108 MDPDGGNVTPLTPKE-----SKTIHPSWSPDSRRVIFCTDDDLAPPKKNDSDILAMDIAT 162 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQKRISQDKEASYF 350 + T +L + +N +SPD +++ F E ++++ NGSD K ++ D F Sbjct: 163 HETTKLISG-GVNTFPVWSPDGTKLAFRRMLGERNSEVFLANENGSDPKNLTNDPA---F 218 Query: 351 D--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS 407 D P WSP G IAF I VM DGS R + +P WS G+ L F+ Sbjct: 219 DGWPAWSPDGKQIAFASNRRGNHEIFVMNADGSGVRKAANSEGRATSPKWSKDGKKLYFT 278 Query: 408 RKKDGDTG--SKLYSIDL 423 K D G ++Y+ID+ Sbjct: 279 NCKKVDLGIDCEIYAIDV 296 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 2/109 (1%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+ ++SPD ++++ S GKEQL+ + +G + ++++D +A + DP WSP G +AF Sbjct: 37 NMDPTFSPDGKEMIYISVVAGKEQLFRVGLDGKNPLQLTRD-DADHEDPAWSPDGKHVAF 95 Query: 364 TKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + I +M DG L ++S P+WSP R +IF D Sbjct: 96 VLIHEKVEQIHLMDPDGGNVTPLTPKESKTIHPSWSPDSRRVIFCTDDD 144 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 17/238 (7%) Query: 215 FEPRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +P FSP+ +++ Y + E + RV L + P ++ + P +S +GK Sbjct: 38 MDPTFSPDGKEMIYISVVAGKEQLFRVGL----DGKNPLQLTRDDADHEDPAWSPDGKHV 93 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------REGKE 326 + ++ I+ +D LT I S+SPDS +++F +D ++ Sbjct: 94 AFVLIHEKVEQIHLMDPDGGNVTPLTPKESKTIHPSWSPDSRRVIFCTDDDLAPPKKNDS 153 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERL 385 + M + ++ ++ PVWSP G +AF + GE+ + + + ++GS + Sbjct: 154 DILAMDIATHETTKLISGGVNTF--PVWSPDGTKLAFRRMLGERNSEVFLANENGSDPKN 211 Query: 386 LVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L D P WSP G+ + F+ + G+ + + D +G + N+ A+ P+W Sbjct: 212 LTNDPAFDGWPAWSPDGKQIAFASNRRGNHEIFVMNADGSGVRKA-ANSEGRATSPKW 268 >gi|168701247|ref|ZP_02733524.1| tolB protein [Gemmata obscuriglobus UQM 2246] Length = 337 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/261 (23%), Positives = 119/261 (45%), Gaps = 57/261 (21%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMD---TRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 EP +SP+ +++A+ T D V+LM+ T ++ K+ G + R+S +GKR Sbjct: 67 EPVWSPDGKRIAF-TSDRAGEPDVWLMNADGTEPEQLTKKCGGCTGL----RWSPDGKRI 121 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI----------VFESDR 322 + +++ + +V++ + RL + + AS+SPD ++ ++ + Sbjct: 122 AFTGRQNGIEQVMAVEVATGKVSRLIDGTVLCRHASWSPDGKKLSFGYFPGRYAIYTATA 181 Query: 323 EGKE---------------------------------QLYVMQSNGSDQKRISQDKE--- 346 EGKE Q++V+ ++G+++K++++ Sbjct: 182 EGKELAELTDKKGGLDAAWSPNGQQLAFMTLDADRDWQVFVIGADGNNKKQLTKSANNYG 241 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 A Y P+WSP G+ I+F + K + VM+ DGS +++ WSP G+SL + Sbjct: 242 ARY--PLWSPDGNFISFEEIVDGKLQVAVMRADGSDPKVITSKHEHTLTRWSPDGKSLSY 299 Query: 407 SRKKDGDTGSKLYSIDLNGRN 427 +R + G L+ D +G N Sbjct: 300 ARSEKGQL-PALWVSDPDGGN 319 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 258 SMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 ++ AP + R L+ V + +IY V + A RLT+ + +SPD + Sbjct: 17 ALSTAPVPKAGPPRGLLVVTSNTNGNWEIYLVQASTGAARRLTDNTASDTEPVWSPDGKR 76 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIG 374 I F SDR G+ +++M ++G++ +++++ K WSP G IAFT + +G + + Sbjct: 77 IAFTSDRAGEPDVWLMNADGTEPEQLTK-KCGGCTGLRWSPDGKRIAFTGRQNGIEQVMA 135 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 V G RL+ + +WSP G+ L F Sbjct: 136 VEVATGKVSRLIDGTVLCRHASWSPDGKKLSFG 168 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 4/190 (2%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL+ A +R+ + + P +S +GKR + + D++ ++ E+LT Sbjct: 45 IYLVQASTGAA-RRLTDNTASDTEPVWSPDGKRIAFTSDRAGEPDVWLMNADGTEPEQLT 103 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 +SPD +I F + G EQ+ ++ R+ D WSP G Sbjct: 104 KKCGGCTGLRWSPDGKRIAFTGRQNGIEQVMAVEVATGKVSRLI-DGTVLCRHASWSPDG 162 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 ++F F G ++AI +G + L + WSP+G+ L F D D ++ Sbjct: 163 KKLSFGYFPG-RYAIYTATAEGKELAELTDKKGGLDAAWSPNGQQLAF-MTLDADRDWQV 220 Query: 419 YSIDLNGRNE 428 + I +G N+ Sbjct: 221 FVIGADGNNK 230 >gi|145640336|ref|ZP_01795920.1| translocation protein TolB precursor [Haemophilus influenzae R3021] gi|145274922|gb|EDK14784.1| translocation protein TolB precursor [Haemophilus influenzae 22.4-21] Length = 292 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 116/227 (51%), Gaps = 13/227 (5%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G + Sbjct: 62 ISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSG-NGY 119 Query: 125 RVEFRLWDVKDRKQIIGKKF----FSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILF 179 + ++L D G ++ W R AHT+SD++++ ++G +G F +RI + Sbjct: 120 SITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLSGIRGAFRTRIAY 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ + Sbjct: 180 VVQK-NGGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENK---KS 234 Query: 240 YLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 L+ ++ ++ + +F+ AP FS +G R + +D ++IY Sbjct: 235 QLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIY 281 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY---VMQSNGSDQKRISQDKEASY 349 +++ +F +S ++I + + G Q Y V +G +Q +++ + Sbjct: 154 GAHTVSDEVFEKLSGIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGYNQFIVNRSAQ-PI 212 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR 408 P WSP G +A+ F +K + V + +++ + AP +SP G L F+ Sbjct: 213 MSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFAS 272 Query: 409 KKDG 412 +DG Sbjct: 273 SRDG 276 >gi|301058338|ref|ZP_07199371.1| TolB amino-terminal domain protein [delta proteobacterium NaphS2] gi|300447574|gb|EFK11306.1| TolB amino-terminal domain protein [delta proteobacterium NaphS2] Length = 215 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 7/150 (4%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP--DSIPRFQDWNSLGAQVLVTGRVI 117 EL ++ VVS DL S FN + + SF + P F+DW+ +GA++L+ G Sbjct: 59 ELSSELPGVVSNDLDLSGYFNPLDKASFLEGKNGPIKGKDINFKDWSVIGAELLLKGGYT 118 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G ++L VE RL+DV +QI+GK+ S +R + H +S++I + +TG +G +R+ Sbjct: 119 CSG-NQLEVEIRLFDVFFGRQILGKRAIGSLDDYRHLMHRLSNEIIKRLTGHEGISMTRL 177 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 FV + + + D DG N+R LT Sbjct: 178 AFVGTATG----QREIYACDYDGRNVRPLT 203 >gi|196229417|ref|ZP_03128282.1| peptidase M28 [Chthoniobacter flavus Ellin428] gi|196226649|gb|EDY21154.1| peptidase M28 [Chthoniobacter flavus Ellin428] Length = 988 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 28/191 (14%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 F ++GK+ S D+ MDIYS + LTN+ + S+SPD QIVF S R Sbjct: 121 FRASGKQRRYSWDYDQTMDIYSCNQDGTQMVNLTNSPGYDAEGSFSPDGKQIVFCSLRAA 180 Query: 325 -------KEQ-------------LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIA 362 EQ +Y+M ++GS+ +R++ +A +D P +SP G I Sbjct: 181 FPLEKLTPEQRARYEKDPAYFGDIYLMNADGSNVRRLT---DAPGYDGGPFFSPDGARII 237 Query: 363 FTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLY 419 + F SG + MK DGS + + + ++ AP + PSG+ +IF+ K G T +LY Sbjct: 238 WRHFDESGMFADVWTMKLDGSDKHRVTDFKSMSWAPFYHPSGKYIIFTSNKLGFTNFELY 297 Query: 420 SIDLNGRNETL 430 +D+NG +E + Sbjct: 298 IVDVNGDHEPV 308 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 14/151 (9%) Query: 193 LCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILR-VYLMDTRIDRA 249 + +M+ DG+N+R LT P D P FSP+ ++ + +D+ + V+ M ++D + Sbjct: 204 IYLMNADGSNVRRLTDAPGYDG---GPFFSPDGARIIWRHFDESGMFADVWTM--KLDGS 258 Query: 250 PK-RIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATE-RLTNTLFINI 305 K R+ +F+SM AP + +GK + + K ++Y VD+ + R+T T + Sbjct: 259 DKHRVTDFKSMSWAPFYHPSGKYIIFTSNKLGFTNFELYIVDVNGDHEPVRVTYTDGFDG 318 Query: 306 SASYSPDSSQIVFESDR--EGKEQLYVMQSN 334 +SP+ +I + S R +GK Q+++ N Sbjct: 319 LPVFSPNGKKISWTSGRTSDGKSQIFLADWN 349 >gi|260062320|ref|YP_003195400.1| tolB protein [Robiginitalea biformata HTCC2501] gi|88783882|gb|EAR15053.1| tolB protein [Robiginitalea biformata HTCC2501] Length = 303 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 14/229 (6%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN LT D + F P +S + +++ + D + +Y MD + R R+ Sbjct: 49 IMDGDGANPENLT-RHDSLDFSPSWSADGTSLSFYSKRDGNA-EIYRMDLQT-RQLTRLT 105 Query: 255 NFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 N + + P S +G + L +D + ++Y +D + +LT S +SPD Sbjct: 106 NHPATDVLPVPSPDGSQILFMSDRDSLSRNVYVMDKDGSGIRQLTRNAAYEESPEWSPDG 165 Query: 314 SQIVF--------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SQI F ++ G ++++M + G KR++ DKE +SP G IAF Sbjct: 166 SQIAFTRQLRDSSDTSHAGNGEIFLMDAQGGGVKRLT-DKEGYDSGAKFSPDGSKIAFYG 224 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGD 413 +++ + + DG+ + L D+ +P WSP G L+++ G+ Sbjct: 225 AQEDQWDLYTINADGTGLQNLTNDAIECYSPDWSPDGEWLVYTAGSKGN 273 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 30/240 (12%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 K+A+ T D + VY+MD D A P+ + S+ +P +S++G ++D + Sbjct: 34 KIAFVT-DRDGNPEVYIMDG--DGANPENLTRHDSLDFSPSWSADGTSLSFYSKRDGNAE 90 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRIS 342 IY +DLQ+ RLTN ++ SPD SQI+F SDR+ +YVM +GS ++++ Sbjct: 91 IYRMDLQTRQLTRLTNHPATDVLPVPSPDGSQILFMSDRDSLSRNVYVMDKDGSGIRQLT 150 Query: 343 QDKEASYFD-PVWSPQGDLIAFTK-----------FSGEKFAIGVMKKDGSQERLLVEDS 390 + A+Y + P WSP G IAFT+ +GE F + + G +RL ++ Sbjct: 151 --RNAAYEESPEWSPDGSQIAFTRQLRDSSDTSHAGNGEIFLMDA--QGGGVKRLTDKEG 206 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLIN------TPAYASDPQWV 443 +SP G + F ++ LY+I+ +G + L N +P ++ D +W+ Sbjct: 207 YDSGAKFSPDGSKIAFYGAQEDQW--DLYTINADGTGLQNLTNDAIECYSPDWSPDGEWL 264 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 46/225 (20%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDD 233 S+ILF+S+ + ++ VMD+DG+ IR LT R+ E P +SP+ ++A+ Sbjct: 121 SQILFMSDRDS---LSRNVYVMDKDGSGIRQLT--RNAAYEESPEWSPDGSQIAF----- 170 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 TR R + + NG+ I+ +D Q Sbjct: 171 ----------TRQLRDSSDTSH----------AGNGE-------------IFLMDAQGGG 197 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +RLT+ + A +SPD S+I F +E + LY + ++G+ + ++ D Y P Sbjct: 198 VKRLTDKEGYDSGAKFSPDGSKIAFYGAQEDQWDLYTINADGTGLQNLTNDAIECY-SPD 256 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTW 397 WSP G+ + +T S + I + + + RL +AP+W Sbjct: 257 WSPDGEWLVYTAGSKGNYNIWKINIRTKERVRLTRTSGRNEAPSW 301 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 10/135 (7%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S +I F +DR+G ++Y+M +G++ + +++ ++ F P WS G ++F +S Sbjct: 32 SGKIAFVTDRDGNPEVYIMDGDGANPENLTR-HDSLDFSPSWSADGTSLSF--YSKRDGN 88 Query: 373 IGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN- 427 + + D Q R L +N A P SP G ++F +D +Y +D +G Sbjct: 89 AEIYRMD-LQTRQLTRLTNHPATDVLPVPSPDGSQILFMSDRD-SLSRNVYVMDKDGSGI 146 Query: 428 ETLINTPAYASDPQW 442 L AY P+W Sbjct: 147 RQLTRNAAYEESPEW 161 >gi|294505693|ref|YP_003569754.1| TolB protein precursor [Salinibacter ruber M8] gi|294342132|emb|CBH22796.1| TolB protein precursor [Salinibacter ruber M8] Length = 543 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 29/270 (10%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA-------PK 251 DG+N+R +T S I P +SP+ ++A+ D + R D + P Sbjct: 273 DGSNLRQVTNSATGI--SPTWSPDGSRIAFTADGGGDDANDPIATIRPDGSDLSPVTDPA 330 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE-AMD-----IYSVDLQSNATERLTNTLFINI 305 + + R +AP +S +G R S D A D IY+VD + ++ I Sbjct: 331 DVEDGRIADVAPEWSPSGDRIAFSRDPDTTARDTTEPRIYTVDPDGSDLRQVAEDKAIGF 390 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ----DKEASYFDPVWSPQGDLI 361 + ++SPD S+I F + + ++ ++ +GSD ++++ D + P WSP G I Sbjct: 391 NPTWSPDGSRIAFSTPAD-PSVIFTIRPDGSDLRQVTDRSDIDGNSGDLAPAWSPDGSRI 449 Query: 362 AF--TKFSGEKFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRSLIFSRKKDGD 413 AF + G F I + DGS + + + +P WSP G ++F +DG Sbjct: 450 AFQSDRDGGSSFDIYTVDPDGSDLKQVTTAGDRDDRVDDISPAWSPDGSRIVFGSNRDGS 509 Query: 414 TGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 +Y+I +G E + N P W Sbjct: 510 AVPDIYTIRPDGSELERITNNDRLDFGPAW 539 >gi|298529978|ref|ZP_07017380.1| WD40 domain protein beta Propeller [Desulfonatronospira thiodismutans ASO3-1] gi|298509352|gb|EFI33256.1| WD40 domain protein beta Propeller [Desulfonatronospira thiodismutans ASO3-1] Length = 444 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 148/325 (45%), Gaps = 24/325 (7%) Query: 126 VEFRLWDVKDRKQIIGKKFF-----SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 VE R ++V D++ I+G+ + P R+ ++ + +TG F SR+ F Sbjct: 130 VEIRAFEVFDQRMILGRAYDLQDLDQVPLMLRRFCA----ELMEYLTGNGDFFRSRLAF- 184 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRV 239 E +G + + G ++ LT R I P +SP+ ++A+ D+E L + Sbjct: 185 -ERKKNG--NKDIWSVTPQGNDLTRLTDLRG-ITLSPAWSPDGSRIAFTLMRDNEHHLGI 240 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + ++ + GN +++P FS G+ AL S+ DIY +D E + Sbjct: 241 WDLEKGEEEVFSMPGN---TVISPAFSPEGRLAL-SLDPMGRPDIYWLDDDYGVDETIME 296 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I++S S+ +++ F S R G ++V +R+S + + +P SP+GD Sbjct: 297 HWAIDVSPSFDASGTKMAFASGRLGNPHIFVHDFEKGQIQRVSYEGRYNT-NPSISPEGD 355 Query: 360 LIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +AFT+ + + I V+ + G ++++ N + P ++P G + FS + G+ +L Sbjct: 356 FVAFTRQTPDGHRIFVVDLETGREKQISSGPGNDEDPAFAPDGYFVAFSSNRSGEY--RL 413 Query: 419 YSIDLNGRNETLINT-PAYASDPQW 442 Y NG I+T A P W Sbjct: 414 YLTTRNGDEPREISTGEGNAKAPAW 438 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S G + Q + I+ VDL++ +++++ + +++PD + F S+R Sbjct: 348 PSISPEGDFVAFTRQTPDGHRIFVVDLETGREKQISSGPGNDEDPAFAPDGYFVAFSSNR 407 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 G+ +LY+ NG + + IS E + P W + D Sbjct: 408 SGEYRLYLTTRNGDEPREIST-GEGNAKAPAWGLEKDF 444 >gi|299140155|ref|ZP_07033323.1| transcriptional regulator domain protein [Acidobacterium sp. MP5ACTX8] gi|298597884|gb|EFI54054.1| transcriptional regulator domain protein [Acidobacterium sp. MP5ACTX8] Length = 752 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 10/176 (5%) Query: 263 PRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P S G R A I + ++ ++ S D E+L + FI+ + YSPD S+I FESD Sbjct: 452 PVVSPKGHRLAYIDLLRNGSLWRMSTDGHGK-QEQLIASRFIDSAPDYSPDGSEIAFESD 510 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R G +++V +++G+ KR++ + P WSP G L+AF + AI V+ G Sbjct: 511 RTGASEIWVCKNDGTQCKRLTNIFGPNTSSPRWSPDGKLLAFNSGFHGRSAIFVVNASGG 570 Query: 382 QERLLVEDSNLQA-----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 LLV +A P WS G+SL FS + G +++ +NG E I Sbjct: 571 IP-LLVTTGAFEAADNLIPNWSRDGQSLYFSSNRTGRF--EVWKTKVNGDEERQIT 623 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 23/242 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILR-VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA--L 273 P FSPN +AY+ + D + +Y+ D K +S +P +S G+ L Sbjct: 216 PTFSPNGNSLAYSWHSDAGQDQAIYMQKVDSDDREKLSDGGKS--FSPAWSPRGEEIAYL 273 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFIN---------ISASYSPDSSQIVFESDREG 324 + + + ++I +Q T R + FIN + ++SPD S +V + Sbjct: 274 RATEDPKWLEIEVAKVQRPHTAR--HLAFINNLKSAFHDVPTLNWSPDGSWLVTTEKEDA 331 Query: 325 KEQLY---VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDG 380 E + V NG Q + + V+SPQGD IAF + G A I VM G Sbjct: 332 DESSHLELVSLENGEKQALTHPPALSVDVNAVFSPQGDWIAFVRARGPSSAEIHVMPAHG 391 Query: 381 SQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYAS 438 +R+L + ++ TWS G+SL+ + + G+ L+ + LNG ++T PA+ Sbjct: 392 GPDRVLPFNIHSINGLTWSADGQSLLVASSRALSVGN-LWKLSLNGDPPVALSTLPAHTE 450 Query: 439 DP 440 DP Sbjct: 451 DP 452 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 15/225 (6%) Query: 216 EPRFSPNQQKVAYATYDDEDILR---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +P SP ++AY D+LR ++ M T +++ R + AP +S +G Sbjct: 451 DPVVSPKGHRLAYI-----DLLRNGSLWRMSTDGHGKQEQLIASRFIDSAPDYSPDGSEI 505 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIVFESDREGKEQLYVM 331 + A +I+ +RLTN N S+ +SPD + F S G+ ++V+ Sbjct: 506 AFESDRTGASEIWVCKNDGTQCKRLTNIFGPNTSSPRWSPDGKLLAFNSGFHGRSAIFVV 565 Query: 332 QSNGSDQKRISQD--KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++G ++ + A P WS G + F+ +F + K +G +ER + + Sbjct: 566 NASGGIPLLVTTGAFEAADNLIPNWSRDGQSLYFSSNRTGRFEVWKTKVNGDEERQITQH 625 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 S G+SL + + D T ++ I LNG + P Sbjct: 626 GGYNGME-SADGKSLYYIQDTDKTT---IWRIPLNGGEAQPVAGP 666 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 23/171 (13%) Query: 297 LTNTLFINISASYSPDSSQIVF--ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 LT+ + ++SP+ + + + SD + +Y+ + + D++++S ++ F P W Sbjct: 206 LTSVPGVYSWPTFSPNGNSLAYSWHSDAGQDQAIYMQKVDSDDREKLSDGGKS--FSPAW 263 Query: 355 SPQGDLIAFTKFSGEK--FAIGVMK-KDGSQERLLVEDSNLQA-----PT--WSPSGRSL 404 SP+G+ IA+ + + + I V K + R L +NL++ PT WSP G L Sbjct: 264 SPRGEEIAYLRATEDPKWLEIEVAKVQRPHTARHLAFINNLKSAFHDVPTLNWSPDGSWL 323 Query: 405 IFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASD------PQ--WVGFM 446 + + K+D D S L + L NG + L + PA + D PQ W+ F+ Sbjct: 324 VTTEKEDADESSHLELVSLENGEKQALTHPPALSVDVNAVFSPQGDWIAFV 374 >gi|325982655|ref|YP_004295057.1| WD40-like beta Propeller containing protein [Nitrosomonas sp. AL212] gi|325532174|gb|ADZ26895.1| WD40-like beta Propeller containing protein [Nitrosomonas sp. AL212] Length = 368 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 27/185 (14%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE- 326 +G++ S DE DIY D LTNTL + AS+SPD I F S+R Sbjct: 133 SGEQRSYSWDYDEFYDIYETDFSGKNIRNLTNTLGYDAEASWSPDGKLIAFASNRRAYSD 192 Query: 327 ------------------QLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKF 366 +Y+M ++GS+ KR++ + +D P +SP G I + +F Sbjct: 193 ELSAEEAALFKVNPASMIDIYIMNADGSNVKRLTHTQS---YDGGPFFSPDGKRIVWRRF 249 Query: 367 --SGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 SG + I M DG+ ++ + + + AP + PSG+ +IF+ G +LY +D+ Sbjct: 250 SESGREAEIFTMNIDGTDQKQITRLNVMSWAPFYHPSGKYIIFATNLHGHRNFELYIVDV 309 Query: 424 NGRNE 428 +G+ E Sbjct: 310 DGQKE 314 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 30/193 (15%) Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT----YDDE--------------DILR 238 D G NIR LT + E +SP+ + +A+A+ Y DE ++ Sbjct: 153 DFSGKNIRNLTNTLGYDA-EASWSPDGKLIAFASNRRAYSDELSAEEAALFKVNPASMID 211 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL---ISVQKDEAMDIYSVDLQSNATE 295 +Y+M+ KR+ + +S P FS +GKR + S EA +I+++++ + Sbjct: 212 IYIMNADGSNV-KRLTHTQSYDGGPFFSPDGKRIVWRRFSESGREA-EIFTMNIDGTDQK 269 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFD-- 351 ++T ++ + Y P I+F ++ G +LY++ +G + D E FD Sbjct: 270 QITRLNVMSWAPFYHPSGKYIIFATNLHGHRNFELYIVDVDGQKEPVRVTDMEG--FDGL 327 Query: 352 PVWSPQGDLIAFT 364 PV++P G+ I +T Sbjct: 328 PVFTPDGNHITWT 340 >gi|118574578|sp|Q726K4|TOLB_DESVH RecName: Full=Protein tolB; Flags: Precursor Length = 442 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 26/401 (6%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ-----DSFKQKITNPD-SIPRFQDWNSL 106 T + +G K++ ++++L L+ Q + Q +PD + RFQ Sbjct: 52 TPGTPVSGMGVKLNGFINENLSFLPFLRLVDQRAILGGTVMQGYKSPDIDLKRFQ---LA 108 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQS 165 GA ++VT + VE R+++ K + GK + +A D+ ++ Sbjct: 109 GADLVVTAGWPQGDASGSFVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKA 168 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TG F S + FV G K + ++ G ++R +T + L P +SP+ + Sbjct: 169 LTGRGEFFKSTLAFVKHD---GKNKRDVWLVKPVGRDLRKITNLPGEAL-SPSWSPDGRF 224 Query: 226 VAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 V ++ +DD L V+ R+ R +RI + ++ P F + K A +S+ DI Sbjct: 225 VVFSHFDDRSHALGVW---DRLTRQVQRIRFPGNTVIGPCFLPDNKVA-VSLSSGRNPDI 280 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + ++ L IN+S S+ +++ F S R G Q+++ RIS Sbjct: 281 FLLNHLFKKERELEANPSINVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRIS-- 338 Query: 345 KEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 K SY +P SP G L+AFTK + I V ER + + P+++P Sbjct: 339 KTGSYNTEPSISPDGTLVAFTKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSY 398 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 L F+ ++G +++ + +G + + T P AS +W Sbjct: 399 FLAFTSNRNG--AQQIFLVTRHGGDPKRVPTGPGDASFARW 437 >gi|114331371|ref|YP_747593.1| WD40 domain-containing protein [Nitrosomonas eutropha C91] gi|114308385|gb|ABI59628.1| WD40 domain protein beta Propeller [Nitrosomonas eutropha C91] Length = 369 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 35/207 (16%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 G+R + DE DIY D + + LTNT + AS+SPD I F S+R + Sbjct: 135 GQRRAYAWDYDEFYDIYEADFEGKNIKNLTNTKGYDAEASWSPDGKLIAFASNRRAYSEP 194 Query: 328 ------------------LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS 367 +Y+M ++GS+ KR++ + +D P +SP G I + +FS Sbjct: 195 LTEEETALFNNNPSSLIDIYIMDADGSNVKRLTH---TNRYDGGPFFSPDGKRIVWRRFS 251 Query: 368 --GEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 G++ I M DGS ++ L + + AP + PS + +IF+ +G +LY +D++ Sbjct: 252 ENGQEAEIFTMNIDGSDQKQLTRLNKMSWAPFYHPSNQYIIFAANVEGHRNFELYVVDVD 311 Query: 425 GRNETLINT--------PAYASDPQWV 443 + E + T P + D Q++ Sbjct: 312 SKKEPVRVTEEEGFDGLPVFTPDGQYI 338 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 53/177 (29%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + +MD DG+N++ LT + ++ P FSP+ +++ + Sbjct: 213 IYIMDADGSNVKRLTHT-NRYDGGPFFSPDGKRIVWR----------------------- 248 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 RFS NG+ A +I+++++ + ++LT ++ + Y P Sbjct: 249 -----------RFSENGQEA----------EIFTMNIDGSDQKQLTRLNKMSWAPFYHPS 287 Query: 313 SSQIVFESDREGKE--QLYVMQSNGSDQK-RISQDKEASYFD--PVWSPQGDLIAFT 364 + I+F ++ EG +LYV+ + + R+++++ FD PV++P G I +T Sbjct: 288 NQYIIFAANVEGHRNFELYVVDVDSKKEPVRVTEEEG---FDGLPVFTPDGQYITWT 341 >gi|311235155|gb|ADP88009.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio vulgaris RCH1] Length = 445 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 26/401 (6%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ-----DSFKQKITNPD-SIPRFQDWNSL 106 T + +G K++ ++++L L+ Q + Q +PD + RFQ Sbjct: 55 TPGTPVSGMGVKLNGFINENLSFLPFLRLVDQRAILGGTVMQGYKSPDIDLKRFQ---LA 111 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQS 165 GA ++VT + VE R+++ K + GK + +A D+ ++ Sbjct: 112 GADLVVTAGWPQGDASGSFVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKA 171 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TG F S + FV G K + ++ G ++R +T + L P +SP+ + Sbjct: 172 LTGRGEFFKSTLAFVKHD---GKNKRDVWLVKPVGRDLRKITNLPGEAL-SPSWSPDGRF 227 Query: 226 VAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 V ++ +DD L V+ R+ R +RI + ++ P F + K A +S+ DI Sbjct: 228 VVFSHFDDRSHALGVW---DRLTRQVQRIRFPGNTVIGPCFLPDNKVA-VSLSSGRNPDI 283 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + ++ L IN+S S+ +++ F S R G Q+++ RIS Sbjct: 284 FLLNHLFKKERELEANPSINVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRIS-- 341 Query: 345 KEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 K SY +P SP G L+AFTK + I V ER + + P+++P Sbjct: 342 KTGSYNTEPSISPDGTLVAFTKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSY 401 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 L F+ ++G +++ + +G + + T P AS +W Sbjct: 402 FLAFTSNRNG--AQQIFLVTRHGGDPKRVPTGPGDASFARW 440 >gi|317153133|ref|YP_004121181.1| WD40-like beta Propeller containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943384|gb|ADU62435.1| WD40-like beta Propeller containing protein [Desulfovibrio aespoeensis Aspo-2] Length = 440 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/320 (21%), Positives = 143/320 (44%), Gaps = 13/320 (4%) Query: 126 VEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 +E R+++ ++++GK + + + A +++TG+KG F+S + FV + Sbjct: 125 LEARVFETFGGRRVVGKSYNDVGEITLAQAADRFCSAFLEALTGKKGFFDSPVAFVRQ-- 182 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G K V+ + G ++ +T + P +S + K+ + T+ + + D+ Sbjct: 183 -DGKAKEIYTVLPQ-GRELKRIT-NLGGYNLSPSWSADGSKIIF-THIASTRHELGVYDS 238 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + I++P F G + ++++ + A DI +D L + +I+ Sbjct: 239 KTQKITLYSQGLGQTIISPVFGP-GDKPIVALNVNGATDIQELDASFKPQRVLARSPYID 297 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +S S+ +++ F S R G +Y+M + +R++ + + P SP G IA+T Sbjct: 298 VSPSFDRTGTKMAFTSGRAGNPHVYLMDMKSGEVRRVTMTGKYNT-HPCLSPDGRYIAYT 356 Query: 365 KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G I + G +++L N + P + P G + F+ + G G KLY Sbjct: 357 NRTGSGHRIFLHDLATGREKQLTFGPGNDEYPAFDPDGYFVAFASNRSG--GFKLYLTTR 414 Query: 424 NGRNETLINT-PAYASDPQW 442 +G +I+T P A P W Sbjct: 415 HGDTPRVISTGPGQAFAPAW 434 >gi|46581506|ref|YP_012314.1| tolB protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450928|gb|AAS97574.1| tolB protein, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 456 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 26/401 (6%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ-----DSFKQKITNPD-SIPRFQDWNSL 106 T + +G K++ ++++L L+ Q + Q +PD + RFQ Sbjct: 66 TPGTPVSGMGVKLNGFINENLSFLPFLRLVDQRAILGGTVMQGYKSPDIDLKRFQ---LA 122 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQS 165 GA ++VT + VE R+++ K + GK + +A D+ ++ Sbjct: 123 GADLVVTAGWPQGDASGSFVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKA 182 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TG F S + FV G K + ++ G ++R +T + L P +SP+ + Sbjct: 183 LTGRGEFFKSTLAFVKHD---GKNKRDVWLVKPVGRDLRKITNLPGEAL-SPSWSPDGRF 238 Query: 226 VAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 V ++ +DD L V+ R+ R +RI + ++ P F + K A +S+ DI Sbjct: 239 VVFSHFDDRSHALGVW---DRLTRQVQRIRFPGNTVIGPCFLPDNKVA-VSLSSGRNPDI 294 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + ++ L IN+S S+ +++ F S R G Q+++ RIS Sbjct: 295 FLLNHLFKKERELEANPSINVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRIS-- 352 Query: 345 KEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 K SY +P SP G L+AFTK + I V ER + + P+++P Sbjct: 353 KTGSYNTEPSISPDGTLVAFTKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSY 412 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 L F+ ++G +++ + +G + + T P AS +W Sbjct: 413 FLAFTSNRNG--AQQIFLVTRHGGDPKRVPTGPGDASFARW 451 >gi|269837976|ref|YP_003320204.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787239|gb|ACZ39382.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 663 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 61/244 (25%) Query: 263 PRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ + +G+R V K I+ V+ + R T + S +SPD S++ Sbjct: 19 PQIAPDGRRVAYVVTEIDLEGKRYRSAIWVVNADGSGRTRFTAGTHKDTSPRWSPDGSRL 78 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------------ 364 F SDR+G QLYVM S+G + +RI+ D + DPVWSP G +AF Sbjct: 79 AFLSDRDGVTQLYVMPSDGGEPERIT-DLKHGVADPVWSPDGAWLAFVSKVGPEGPVQRA 137 Query: 365 ------------------------KFSGEKF------AIGVMKKDGSQERLLVE-DSNLQ 393 K GE F I ++ G R + + D + Sbjct: 138 DETEEDRKRAAQRSDTKVIRSLKYKLDGEGFFDDRRRHIFIVPATGGTPRQITDGDWDDT 197 Query: 394 APTWSPSGRSLIFSRKKDGD----TGSKLYSIDLNG-------RNETLINTPAYASDPQW 442 P WSP GR++ F + D T S ++ L+G ++ + N+PA++ D W Sbjct: 198 QPAWSPDGRAIAFVSNRTDDRERNTFSDIWIAPLDGGEPRRITPSDGVYNSPAFSPDGDW 257 Query: 443 VGFM 446 + ++ Sbjct: 258 IAYV 261 >gi|120601328|ref|YP_965728.1| WD40 domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561557|gb|ABM27301.1| WD40 domain protein beta Propeller [Desulfovibrio vulgaris DP4] Length = 463 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 26/401 (6%) Query: 53 TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ-----DSFKQKITNPD-SIPRFQDWNSL 106 T + +G K++ ++++L L+ Q + Q +PD + RFQ Sbjct: 73 TPGTPVSGMGVKLNGFINENLSFLPFLRLVDQRAILGGTVMQGYKSPDIDLKRFQ---LA 129 Query: 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQS 165 GA ++VT + VE R+++ K + GK + +A D+ ++ Sbjct: 130 GADLVVTAGWPQGDASGSFVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKA 189 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TG F S + FV G K + ++ G ++R +T + L P +SP+ + Sbjct: 190 LTGRGEFFKSTLAFVKHD---GKNKRDVWLVKPVGRDLRKITNLPGEAL-SPSWSPDGRF 245 Query: 226 VAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 V ++ +DD L V+ R+ R +RI + ++ P F + K A +S+ DI Sbjct: 246 VVFSHFDDRSHALGVW---DRLTRQVQRIRFPGNTVIGPCFLPDNKVA-VSLSSGRNPDI 301 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + ++ L IN+S S+ +++ F S R G Q+++ RIS Sbjct: 302 FLLNHLFKKERELEANPSINVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRIS-- 359 Query: 345 KEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 K SY +P SP G L+AFTK + I V ER + + P+++P Sbjct: 360 KTGSYNTEPSISPDGTLVAFTKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSY 419 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 L F+ ++G +++ + +G + + T P AS +W Sbjct: 420 FLAFTSNRNG--AQQIFLVTRHGGDPKRVPTGPGDASFARW 458 >gi|226228060|ref|YP_002762166.1| hypothetical protein GAU_2654 [Gemmatimonas aurantiaca T-27] gi|226091251|dbj|BAH39696.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 338 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 28/275 (10%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-------YDDEDILRV 239 G+ L V D + L RD P S + Q+V Y YD +D+ V Sbjct: 72 GVPSLRLMVYHTDSGTVAPLF-GRDIAGGSPSVSADGQRVVYVGESNSTVDYDFQDLWVV 130 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM---DIYSVDLQSNATER 296 AP+R+ AP S NG ALI+ + AM IY D++ A Sbjct: 131 MR-----GAAPRRLALSDGSEHAPSMSPNG--ALIAYARPNAMMLSHIYVADIEGRAESP 183 Query: 297 LTNTL-----FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L+ + + + ++SPD ++++F G LY M+ +G+ ++I+ + S FD Sbjct: 184 LSLAMAPGLQYTFATPAWSPDGTRLLFAGGAPGMLHLYTMRVDGTQVQQIT-NATYSDFD 242 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 WSP G IAF ++ I +M ++ ER + + P WSP G + F Sbjct: 243 GTWSPDGQTIAFVRYISPNHQI-LMTRNLVTGAERTFEYANRSRHPAWSPDGTRIAFVSN 301 Query: 410 KDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 + +LY++ +G T L N P W+ Sbjct: 302 MSDNADLELYTVKPDGSALTRLTNDNLTQQHPSWI 336 >gi|256823743|ref|YP_003147706.1| WD40 domain-containing protein beta Propeller [Kangiella koreensis DSM 16069] gi|256797282|gb|ACV27938.1| WD40 domain protein beta Propeller [Kangiella koreensis DSM 16069] Length = 1068 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 27/182 (14%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + +TN++ ++ +SP+ Q+ F +D+ G + ++VM S+GSDQ +++ Sbjct: 72 DIYTMPMSGGKATNITNSMAWDMQPRFSPNGQQLAFTTDQGGGDNIWVMDSDGSDQYQVT 131 Query: 343 QDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGV------MKKDGSQERL---LVEDSNL 392 ++ +PVWSP G+ IA K F+G + ++G K GS +L E +L Sbjct: 132 KESFRLLNNPVWSPDGNYIAARKHFTGTR-SLGAGEIWLYHKSGGSGVQLNKRPNEQKDL 190 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKL-YSIDLN-------------GRNETLINTPAYAS 438 P ++P G+ ++FSR D GS YS D N G ET I+ P A Sbjct: 191 GEPAFTPDGKYVLFSR--DSTPGSYFEYSKDSNEQIYEVFAINRETGDIETWIDGPGGAV 248 Query: 439 DP 440 P Sbjct: 249 RP 250 >gi|260061950|ref|YP_003195030.1| hypothetical protein RB2501_10125 [Robiginitalea biformata HTCC2501] gi|257796359|gb|EAR17253.2| hypothetical protein RB2501_10125 [Robiginitalea biformata HTCC2501] Length = 486 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%) Query: 221 PNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQ 277 P+ ++A + + DD + +Y + P+++ G +S++G+ L + Sbjct: 280 PDGSRIAISHHNPDDGGVSSIYHLPIEGSDHPEKVTGEGLGASYLHGWSADGQTMLFTGN 339 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 ++ DIY+VD+ S +LTN ++ + YSPD I F S+R G Q++ M+ +GS+ Sbjct: 340 RNGQYDIYAVDVASGKETQLTNQETLDDGSEYSPDGQWIYFNSNRTGTMQIWRMRPDGSE 399 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGE-----KFAIGVMKKDGSQERLLV 387 Q +++ D+ +F P SP G + F SG+ + +M +G Q + Sbjct: 400 QTQLTHDRFNDWF-PHVSPDGKQVVMISFPTSVPSGDHPFYKHCMLRIMPYEGGQPVAIA 458 Query: 388 ----EDSNLQAPTWSPSGRSLIFSRKKD 411 + P+WSP R + F D Sbjct: 459 YVYGGQGTINVPSWSPDSRYIAFVTNSD 486 >gi|30248906|ref|NP_840976.1| periplasmic component of the Tol biopolymer transport system [Nitrosomonas europaea ATCC 19718] gi|30138523|emb|CAD84813.1| Periplasmic component of the Tol biopolymer transport system [Nitrosomonas europaea ATCC 19718] Length = 369 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 33/207 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R + DE DIY D LT+T + AS+SPD I F S+R + Sbjct: 134 SGQRRSYAWDYDEFYDIYETDFAGGNIRNLTHTKGYDAEASWSPDGRLIAFASNRRAYSE 193 Query: 328 -------------------LYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFS 367 +Y+M ++GS+ KR++ SY P +SP G I + +FS Sbjct: 194 PLSEAETVLFSNDPSSMIDIYIMDADGSNVKRLTHTN--SYDGGPFFSPDGKRIVWRRFS 251 Query: 368 --GEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 G++ I M DGS ++ + + + AP + PS + +IF+ G +LY +D++ Sbjct: 252 ENGQEAEIFTMNTDGSDQKQITRLNKMSWAPFYHPSNQYIIFATNVHGHRNFELYIVDID 311 Query: 425 GRNETLINT--------PAYASDPQWV 443 G+ E + T P + D Q++ Sbjct: 312 GKKEPVRVTDEEGFDGLPVFTPDGQYI 338 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREG 324 S + L S +DIY +D + +RLT+T + +SPD +IV+ S+ Sbjct: 196 SEAETVLFSNDPSSMIDIYIMDADGSNVKRLTHTNSYDGGPFFSPDGKRIVWRRFSENGQ 255 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK-FAIGVMKKDGSQ 382 + +++ M ++GSDQK+I++ + S+ P + P I F T G + F + ++ DG + Sbjct: 256 EAEIFTMNTDGSDQKQITRLNKMSW-APFYHPSNQYIIFATNVHGHRNFELYIVDIDGKK 314 Query: 383 ERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLY 419 E + V D P ++P G+ + ++ + D +L+ Sbjct: 315 EPVRVTDEEGFDGLPVFTPDGQYITWTSDRTPDHKGRLF 353 >gi|325293040|ref|YP_004278904.1| tolB protein [Agrobacterium sp. H13-3] gi|325060893|gb|ADY64584.1| tolB protein [Agrobacterium sp. H13-3] Length = 276 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK +D+ DIYS+D+ S RLT+ N YSPD I F S R G Sbjct: 117 WSPDGKGFAYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGEWIYFNSSRTG 176 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 + Q++ ++ +GS +RI+ +F P SP GD + F + + F + +M Sbjct: 177 QMQIWRVRVDGSAVERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLNVRVRLM 235 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG L + + +P WSP G + R Sbjct: 236 DMDGGNAETLFDLFGGQGTMNSPNWSPDGDEFAYVR 271 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/188 (20%), Positives = 86/188 (45%), Gaps = 16/188 (8%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+++ ++ G R +T ++ + +SP+ + AY D+ + +Y MD ID Sbjct: 90 KSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKGFAYCGIRDQ-VFDIYSMD--IDSG 144 Query: 250 PK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + R+ + P +S +G+ + + M I+ V + +A ER+T++ + + Sbjct: 145 VETRLTHGEGRNDGPDYSPDGEWIYFNSSRTGQMQIWRVRVDGSAVERITDSAYGDWFPH 204 Query: 309 YSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQG 358 SP ++ VF+ R+ ++ +M +G + + + + + P WSP G Sbjct: 205 PSPSGDKVVFVSYDADVFDHPRDLNVRVRLMDMDGGNAETLFDLFGGQGTMNSPNWSPDG 264 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 265 DEFAYVRY 272 >gi|167470904|ref|ZP_02335608.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis FV-1] Length = 225 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 7/205 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 19 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W +LG +V G+V V ++L D I+ + + Sbjct: 79 QPSTAAEVTP-AAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQYKVT 137 Query: 149 ASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W R AHT+SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 138 KQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKT-NGGKFPHELRVSDYDGYN-QFVV 195 Query: 208 PSRDQILFEPRFSPNQQKVAYATYD 232 + L P +SP+ K+AY T++ Sbjct: 196 HRSPEPLMSPAWSPDGSKIAYVTFE 220 >gi|159184859|ref|NP_354645.2| tolB protein [Agrobacterium tumefaciens str. C58] gi|159140140|gb|AAK87430.2| tolB protein [Agrobacterium tumefaciens str. C58] Length = 276 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK +D+ DIYS+D+ S RLT+ N YSPD I F S R G Sbjct: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 + Q++ ++ +GS +RI+ +F P SP GD + F + + F + +M Sbjct: 177 QMQIWRVRVDGSSVERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 235 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG L + + +P WSP G + R Sbjct: 236 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 271 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVF 318 AP +S +GK L++ E + +Y + L + + +T F I SPD + Sbjct: 27 APNWSPDGKYLLLN---SEGL-LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI 82 Query: 319 ESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 E GK +Y++ S G + ++++ + + WSP G + + F I M Sbjct: 83 SDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--WSPDGKSFTYCGIRDQVFDIYSMD 140 Query: 378 KD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 D G + RL + P +SP GR + F+ + G +++ + ++G + I AY Sbjct: 141 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM--QIWRVRVDGSSVERITDSAY 198 Query: 437 A 437 Sbjct: 199 G 199 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/188 (19%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+++ ++ G R +T ++ + +SP+ + Y D+ + +Y MD ID Sbjct: 90 KSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQ-VFDIYSMD--IDSG 144 Query: 250 PK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + R+ + P +S +G+ + + M I+ V + ++ ER+T++ + + Sbjct: 145 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH 204 Query: 309 YSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQG 358 SP ++ VF+ R+ ++ +M +G + + + + + P WSP G Sbjct: 205 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 264 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 265 DEFAYVRY 272 >gi|227822240|ref|YP_002826211.1| putative TolB-like protein [Sinorhizobium fredii NGR234] gi|227341240|gb|ACP25458.1| putative TolB-like protein [Sinorhizobium fredii NGR234] Length = 275 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 239 VYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +YL+ + AP+ + GN S +S +G+ +D+ DIY++ + RL Sbjct: 92 IYLLPSE-GGAPRLVTGNLPSYWHG--WSPDGRMLTYCGIRDQVFDIYTISVDGGEERRL 148 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ N +SPD + I F S R G+ Q++ ++ +GSD +RI+ +F P SP Sbjct: 149 THGEGRNDGPDWSPDGAWIYFNSSRTGRMQIWRVRPDGSDVQRITDSPYGDWF-PHPSPD 207 Query: 358 GDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLI 405 G + + G+ F + +M +G R+L E + P WSP+G + Sbjct: 208 GRHLLVLSYDGDVFDHPRDLDVRLRLMDPEGGNARVLFELFGGQGTMNVPNWSPNGDAFA 267 Query: 406 FSR 408 F R Sbjct: 268 FVR 270 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 12/159 (7%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF---INISASYSPDSSQ 315 ++ AP +S +GK + + D + VD A +T F N SPD + Sbjct: 24 LVEAPNWSPDGK--FLIINGDGRLYRLGVD---GAEPTEIDTGFAGQCNNDHGISPDGNT 78 Query: 316 IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + E GK +Y++ S G + ++ + + + WSP G ++ + + F I Sbjct: 79 LAISDKTEFGKSAIYLLPSEGGAPRLVTGNLPSYWHG--WSPDGRMLTYCGIRDQVFDIY 136 Query: 375 VMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDG 412 + DG +ER L + P WSP G + F+ + G Sbjct: 137 TISVDGGEERRLTHGEGRNDGPDWSPDGAWIYFNSSRTG 175 >gi|32699925|sp|Q8UEU8|Y1656_AGRT5 RecName: Full=Uncharacterized protein Atu1656 Length = 293 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK +D+ DIYS+D+ S RLT+ N YSPD I F S R G Sbjct: 134 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 193 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 + Q++ ++ +GS +RI+ +F P SP GD + F + + F + +M Sbjct: 194 QMQIWRVRVDGSSVERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 252 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG L + + +P WSP G + R Sbjct: 253 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 288 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVF 318 AP +S +GK L++ E + +Y + L + + +T F I SPD + Sbjct: 44 APNWSPDGKYLLLN---SEGL-LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI 99 Query: 319 ESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 E GK +Y++ S G + ++++ + + WSP G + + F I M Sbjct: 100 SDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--WSPDGKSFTYCGIRDQVFDIYSMD 157 Query: 378 KD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 D G + RL + P +SP GR + F+ + G +++ + ++G + I AY Sbjct: 158 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM--QIWRVRVDGSSVERITDSAY 215 Query: 437 A 437 Sbjct: 216 G 216 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/188 (19%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+++ ++ G R +T ++ + +SP+ + Y D+ + +Y MD ID Sbjct: 107 KSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQ-VFDIYSMD--IDSG 161 Query: 250 PK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + R+ + P +S +G+ + + M I+ V + ++ ER+T++ + + Sbjct: 162 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH 221 Query: 309 YSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQG 358 SP ++ VF+ R+ ++ +M +G + + + + + P WSP G Sbjct: 222 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 281 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 282 DEFAYVRY 289 >gi|283850886|ref|ZP_06368172.1| WD40 domain protein beta Propeller [Desulfovibrio sp. FW1012B] gi|283573809|gb|EFC21783.1| WD40 domain protein beta Propeller [Desulfovibrio sp. FW1012B] Length = 442 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 87/384 (22%), Positives = 161/384 (41%), Gaps = 17/384 (4%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP-RFQDWNSLGAQVLVTGRVIKEGKD 122 K+ ++++KDLQ L+ + ++ + F+ ++ VLVT G + Sbjct: 66 KLQDLINKDLQFLPFLQLVPPSNIPGQLGGAKAEQIDFKPFSLAKVDVLVTAN-WTPGTN 124 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 VE R ++V +K ++GK + + A IA ++ ++TG+ G FNS+I FV Sbjct: 125 LGNVELRAFEVYSQKVLVGKGYDGVTDAQLPDIADRFCMELMAALTGQGGFFNSQIAFVK 184 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILRVY 240 S G ++ M R + +T D + P +S + +++ + Y Sbjct: 185 PSSGKGTDIWTVRPMGR---GLTRVTSYNDLGMAVSPAWSFDGRRIVFTLIGSRSH---Y 238 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L P+ + +++PRF +G+ A +S+ DIY + + + Sbjct: 239 LGVWSGGGKPQVYTLPTTNVVSPRFLPDGQIA-VSLSLRGKADIYLLTGGQQPGRAIASG 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I++S S+ + + SD G +YV G +RI+ + +P SP G L Sbjct: 298 PGIDVSPSFDASGRTMAYVSDETGSPNIYVKDVGGGSGRRITSSGYNT--NPSISPDGKL 355 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLY 419 +AFTK G + V QE + + P+++P G + F+ + G K+Y Sbjct: 356 VAFTKQMGGAQKVFVHDLGTGQETQVTSGGGSDENPSFAPDGYFIAFASTRSGQ--KKIY 413 Query: 420 SIDLNGRNETLINTP-AYASDPQW 442 +G ++ T A P W Sbjct: 414 VTTRHGAPPVMVPTGDGPAQMPSW 437 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +GK + Q A ++ DL + ++T+ + + S++PD I F S R Sbjct: 347 PSISPDGKLVAFTKQMGGAQKVFVHDLGTGQETQVTSGGGSDENPSFAPDGYFIAFASTR 406 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 G++++YV +G+ + + P W P Sbjct: 407 SGQKKIYVTTRHGAPPVMVPTGDGPAQM-PSWGP 439 >gi|116621073|ref|YP_823229.1| amidohydrolase [Candidatus Solibacter usitatus Ellin6076] gi|116224235|gb|ABJ82944.1| amidohydrolase [Candidatus Solibacter usitatus Ellin6076] Length = 1046 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 22/189 (11%) Query: 260 ILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 ILAP S +GKR + EA++ ++ +++ AT LTN + + +SPD +I + Sbjct: 365 ILAPALSPDGKRIVF-----EALNQLWLMEIGGEATP-LTNDGYYKQTPVWSPDGKRIAY 418 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD+ G +Y++ +KR++ EA+ DPVWSP G IAF G I + Sbjct: 419 SSDKNGTANVYILDLATQAEKRVTNLHEAAALDPVWSPDGTQIAFQTQEG-TVHIADLAS 477 Query: 379 DGSQE--RLLVEDSNLQAPTWSPSGRSLIFS-------RKKDGDTGSKLYSIDLNGRNET 429 GS+E R E P+WS +G+ L + R ++G S + + DL + Sbjct: 478 GGSREVIRTTFEPGR---PSWSKNGKVLSLAVLRAYTKRYREGT--SLILTADLQSGKQV 532 Query: 430 LINTPAYAS 438 L Y S Sbjct: 533 LTEPAPYKS 541 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 9/142 (6%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIA 362 N+ A+ SPD I+ + + L+ + G +R+++ + EAS P +SP G LIA Sbjct: 87 NLGATVSPDRKTIILDL----QTALWALPFEGGAARRLTEPELEAS--RPDFSPTGSLIA 140 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F FSG F I VMK DGS R L E + + P SP G + FS + ++++ Sbjct: 141 FQSFSGGTFHIWVMKPDGSGRRELTEGHGDDRDPRVSPDGARIAFSSDRAMKGNYDIWTV 200 Query: 422 DL-NGRNETLINTPAYASDPQW 442 ++ G+ + P+ +P W Sbjct: 201 EVATGKLAQWTSDPSDEYEPAW 222 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%) Query: 310 SPDSSQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD ++I F SDR +G ++ ++ + + D Y +P WSP G IA+ + Sbjct: 177 SPDGARIAFSSDRAMKGNYDIWTVEVATGKLAQWTSDPSDEY-EPAWSPDGMEIAYVSGA 235 Query: 368 GEKFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIF 406 G + K G Q R+++E S + AP+WSP G+ + + Sbjct: 236 GAIGHAVLAAKAGGQPRVIIEAPDGSKVNAPSWSPDGKQIAY 277 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 21/206 (10%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 ++ +L + +G R LT + P FSP +A+ ++ +++M + D Sbjct: 103 LQTALWALPFEGGAARRLTEPELEA-SRPDFSPTGSLIAFQSFSG-GTFHIWVM--KPDG 158 Query: 249 APKR-----IGNFRSMILAPRFSSNGKRALISVQKDEAM----DIYSVDLQSNATERLTN 299 + +R G+ R PR S +G R I+ D AM DI++V++ + + T+ Sbjct: 159 SGRRELTEGHGDDRD----PRVSPDGAR--IAFSSDRAMKGNYDIWTVEVATGKLAQWTS 212 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQG 358 ++SPD +I + S + G + I + + S + P WSP G Sbjct: 213 DPSDEYEPAWSPDGMEIAYVSGAGAIGHAVLAAKAGGQPRVIIEAPDGSKVNAPSWSPDG 272 Query: 359 DLIAFTKFSGEKFAIGVMKKD-GSQE 383 IA+ + + K + + K GS E Sbjct: 273 KQIAYVQTTANKLRLLISGKQVGSAE 298 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 61/305 (20%), Positives = 116/305 (38%), Gaps = 82/305 (26%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P + + P SP+ +++ + E + +++LM+ + P + N P +S Sbjct: 359 PRTAKGILAPALSPDGKRIVF-----EALNQLWLMEIGGEATP--LTNDGYYKQTPVWSP 411 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGKE 326 +GKR S K+ ++Y +DL + A +R+TN + +SPD +QI F++ +EG Sbjct: 412 DGKRIAYSSDKNGTANVYILDLATQAEKRVTNLHEAAALDPVWSPDGTQIAFQT-QEGTV 470 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDP---VWSPQGDLI------AFTKFSGEKFAIGVMK 377 + + S G S++ + F+P WS G ++ A+TK E ++ + Sbjct: 471 HIADLASGG------SREVIRTTFEPGRPSWSKNGKVLSLAVLRAYTKRYREGTSLILTA 524 Query: 378 KDGSQERLLVE-------------------------------------DSN--------- 391 S +++L E D+N Sbjct: 525 DLQSGKQVLTEPAPYKSITTRSIDGPIYSPDGTRMAYVMDDYLWVRPVDANGLPVSEARP 584 Query: 392 -----LQAPTWSPSGRSLIFSR-------KKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 AP+WS G+ +++ + DG T ++L R + T + Sbjct: 585 INEEMTDAPSWSADGKRMLYLSAGTLRMIEADGKTPPVTVPVNLTWRRQERTKTIVVHAG 644 Query: 440 PQWVG 444 W G Sbjct: 645 TLWDG 649 >gi|323698025|ref|ZP_08109937.1| WD40 domain protein beta propeller [Desulfovibrio sp. ND132] gi|323457957|gb|EGB13822.1| WD40 domain protein beta propeller [Desulfovibrio desulfuricans ND132] Length = 435 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 97/452 (21%), Positives = 183/452 (40%), Gaps = 36/452 (7%) Query: 9 EELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-----ELGG 63 + + + I CLL+ L F S + V + V+I +D E Sbjct: 2 KRITILIAACLLVCLAAAF--ASAQGPLTVDIHGPGQRMVNIVLLPPKGLDGQPVPEAAA 59 Query: 64 KV-SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 K E+V+ DL L+ + +P QD + Q+ + G + Sbjct: 60 KAFEELVANDLGYIPFLKLVPVTTLLGG--DPSRGVTAQDIDFKPLQLARVDLCLTTGWN 117 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 +E R+++ ++++GK + +A +++TG+KG F+S I FV + Sbjct: 118 GQYLEARVYETFGGRRVVGKAYRDVADKLPMVADRFCSAFLEALTGKKGFFDSPIAFVKQ 177 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF--EPRFSPNQQKVAYATY-DDEDILRV 239 G K V+ + R LT D F P +S +A+ +D L + Sbjct: 178 ---DGKAKEIYTVLPQG----RGLTQISDLGGFNLSPAWSAEGDLIAFTHIGNDRHELCI 230 Query: 240 YLMDT-RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 Y T +I R K +G+ +++P + G S+ + +IY + +RL Sbjct: 231 YEAKTHKIRRIAKGLGD---TVISPVYGP-GDVLYASLNLNGTTNIYELSKSYKVGKRLG 286 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + +I++S S+ S++ F S R G +Y++ +R++ + + P SP G Sbjct: 287 ASPYIDVSPSFDRTGSKMAFTSGRAGNPHIYLLDMQSGQVRRVTTTGKYNT-HPCLSPDG 345 Query: 359 DLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +A+T + + I + + G +++L N + P + P G + F+ + G + Sbjct: 346 RYVAYTHQTSDGHRIFLHDLETGREKQLTFGPGNDEYPAFGPDGYFIAFASSRTG--AYQ 403 Query: 418 LYSIDLNGRNETLINT-------PAYASDPQW 442 LY +G I+T PA+ + QW Sbjct: 404 LYLTTRHGDTPRRISTGKGAAFAPAWDTSLQW 435 >gi|171057547|ref|YP_001789896.1| periplasmic component of the Tol biopolymer transport system [Leptothrix cholodnii SP-6] gi|170774992|gb|ACB33131.1| periplasmic component of the Tol biopolymer transport system [Leptothrix cholodnii SP-6] Length = 296 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 19/204 (9%) Query: 219 FSPNQQKVAYATYDDEDIL-RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++A + + ED+ R+Y++ P R+ + L +S +G+R + Sbjct: 90 LSPDGARLAISHFAHEDVSSRIYIVPLG-GGVPVRVTDLGPNYLH-GWSPDGQRLAYCAE 147 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D D+Y++ + RLT+T ++ YSPD I F S R G Q++ M +G + Sbjct: 148 RDGQYDVYTIPVHGGPETRLTDTPGLDDGPEYSPDGRHIWFNSTRSGLMQVWRMDIHGRN 207 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----------VMKKDGSQERLL 386 Q + +D +F P SP G + + + + A G ++ +G + R + Sbjct: 208 QTHVIKDDANCWF-PHVSPDGQRVVYVAYDKDNVAPGDHPPDKPVEIRLVSAEGGKPRTI 266 Query: 387 VE----DSNLQAPTWSPSGRSLIF 406 + L +W+P R + F Sbjct: 267 AQLFGGQGTLNVNSWAPDNRHIAF 290 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 85/181 (46%), Gaps = 13/181 (7%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY--SPDS 313 F +I AP ++ +G+R + + +++ +L S R+ ++ + + SPD Sbjct: 39 FDVVIEAPNWTRDGRRLIF----NSLGGMFAYELSSGEVTRIDTGFAVDCNNDHVLSPDG 94 Query: 314 SQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +++ + + ++Y++ G R++ D +Y WSP G +A+ ++ Sbjct: 95 ARLAISHFAHEDVSSRIYIVPLGGGVPVRVT-DLGPNYLH-GWSPDGQRLAYCAERDGQY 152 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + G E L + L P +SP GR + F+ + G +++ +D++GRN+T Sbjct: 153 DVYTIPVHGGPETRLTDTPGLDDGPEYSPDGRHIWFNSTRSGLM--QVWRMDIHGRNQTH 210 Query: 431 I 431 + Sbjct: 211 V 211 >gi|108763053|ref|YP_628620.1| beta-propeller repeat-containing to-pal system protein TolB [Myxococcus xanthus DK 1622] gi|108466933|gb|ABF92118.1| tol-pal system beta propeller repeat protein TolB [Myxococcus xanthus DK 1622] Length = 366 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 19/312 (6%) Query: 144 FFSSPASWRKIAHTISDDIYQSIT-GEKGDF-------NSRILFVSESVVSGIIKNSLCV 195 F S A + + D + +T GE+ ++ +L ++ + G+ + + V Sbjct: 55 FLSERAGQKDVWKVSPDGVETQLTRGEEDEYPGPLSPDGKSLLVITATEEGGLHRQQMRV 114 Query: 196 MDRDGANIRY-LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + DG + L P R + ++P+ + A D E V ++ R R+ Sbjct: 115 LPLDGKSPAVPLHPPRARAR-NASWAPDGTWLV-AESDAEGFSDVVRLEPREGGPEVRLT 172 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 P S +GK ++ ++Y + + RLT + + +SPD Sbjct: 173 QVPQGCFEPAVSPDGKEVAFVCSREGDPEVYVANADGSGERRLTFFHHEDRTPKWSPDGK 232 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGD-LIAFTKFSGEKFA 372 +V SDRE K++LY ++ +GSD + +S + E + WSP G L+ ++ Sbjct: 233 WLVIVSDRERKDRLYFLRPDGSDLRAVSGESFEGDEREAAWSPDGQRLVYVSRLPDGNAR 292 Query: 373 IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I ++ G L + + P WSP G+ L F ++ GDT +Y + +G +T + Sbjct: 293 IWMVAVAGGAPVALTDGKHRDDMPAWSPDGKYLAFVSERQGDT--DVYVMRADGSGQTRL 350 Query: 432 NTPAYASDPQWV 443 T A P W+ Sbjct: 351 TT---AKGPDWL 359 >gi|332665861|ref|YP_004448649.1| hypothetical protein Halhy_3928 [Haliscomenobacter hydrossis DSM 1100] gi|332334675|gb|AEE51776.1| hypothetical protein Halhy_3928 [Haliscomenobacter hydrossis DSM 1100] Length = 527 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK+ + + Q+++ DI+SVD+ + LTNTL ++ S ++PD I F S R G Sbjct: 367 WSPDGKKLIFTGQRNKQYDIWSVDIATKKETPLTNTLTLDDSPEFTPDGKWIYFNSVRTG 426 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIG 374 +L+ M+ +GS Q++++ D+ +F P SP G I + + E K + Sbjct: 427 TMKLWRMKPDGSQQEQVTFDEYNDWF-PHISPDGKWIVYLSYPKEINPTDHPWYQKIYLR 485 Query: 375 VMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIF 406 +M G R + + P+WSP + + F Sbjct: 486 LMPAAGGIPRNIAYVYGGQGTINVPSWSPDSKRIAF 521 >gi|327538740|gb|EGF25390.1| peptidase M28 [Rhodopirellula baltica WH47] Length = 1074 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 31/195 (15%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQ------SNATERLTNTLFINISASYSPDSSQIVF 318 F ++G+ S D ++Y+ +L + LT+ + + ASYSPD QIVF Sbjct: 164 FRASGESRRYSWDYDPNYELYAAELDQIEPGTTKGLTALTSAMGYDAEASYSPDGKQIVF 223 Query: 319 ESDREG-------KEQ------------LYVMQSNGSDQKRISQDKEASY-FDPVWSPQG 358 S+R +EQ LY+M ++GS+ KR++ E Y P +SP G Sbjct: 224 ASNRAAYSRELTEREQEQFERDPAFMIDLYIMNADGSNVKRLT--NEPGYDGGPFFSPDG 281 Query: 359 DLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG 415 I + +F+ G I MK DGS + L E + + AP + PSG L+F+ K G Sbjct: 282 QRICWRRFAPNGATAEIFTMKTDGSDVQRLTEINAMSWAPFYHPSGEFLVFTTNKHGFAN 341 Query: 416 SKLYSIDLNGRNETL 430 +LY + +G E + Sbjct: 342 FELYLVRADGEGEPV 356 >gi|284116166|ref|ZP_06386712.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] gi|283829532|gb|EFC33886.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] Length = 312 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 80/145 (55%), Gaps = 13/145 (8%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 P ++++VF S+R+G ++Y+M +GSDQ R++ + F PVWSP G+ + F ++ Sbjct: 2 PTTAKVVFTSERDGNREIYMMNPDGSDQVRLTNHRADDTF-PVWSPTGERVLFAS-DRDR 59 Query: 371 FAIG----VMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 F + +M DG R+ + + A TWSP G+ + +SR++ G+ +Y ++G Sbjct: 60 FTLSRDLYLMDPDGKNVRRVFGKSEDRSAATWSPDGKQIAYSRRE--LNGAYIYIGTIDG 117 Query: 426 RNETLI----NTPAYASDPQWVGFM 446 + E + +PA++ D + F+ Sbjct: 118 KKEERMAIGDGSPAWSPDGTQIAFL 142 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 18/145 (12%) Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---KEQ 327 + + + ++D +IY ++ + RLTN + +SP +++F SDR+ Sbjct: 6 KVVFTSERDGNREIYMMNPDGSDQVRLTNHRADDTFPVWSPTGERVLFASDRDRFTLSRD 65 Query: 328 LYVMQSNGSDQKRI---SQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIGVMKKDG-S 381 LY+M +G + +R+ S+D+ A+ WSP G IA+++ +G IG + DG Sbjct: 66 LYLMDPDGKNVRRVFGKSEDRSAA----TWSPDGKQIAYSRRELNGAYIYIGTI--DGKK 119 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIF 406 +ER+ + D +P WSP G + F Sbjct: 120 EERMAIGDG---SPAWSPDGTQIAF 141 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 23/248 (9%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 ++++F SE + + +M+ DG++ LT R F P +SP ++V +A+ D Sbjct: 5 AKVVFTSERDGN----REIYMMNPDGSDQVRLTNHRADDTF-PVWSPTGERVLFASDRDR 59 Query: 235 DILR--VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 L +YLMD + G A +S +GK+ S ++ IY + Sbjct: 60 FTLSRDLYLMDPDGKNVRRVFGKSEDRSAA-TWSPDGKQIAYSRRELNGAYIYIGTIDGK 118 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRI-SQDKEASYF 350 ER+ + S ++SPD +QI F S E K+ ++ ++ QK + ++ + S+ Sbjct: 119 KEERMA---IGDGSPAWSPDGTQIAFLSGFENKQVRINILDVRTKKQKVLFPREAKPSWI 175 Query: 351 --DPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVEDSNLQ--APTWSPS 400 D VWS D +AF+ G K + + DG+ + + D+ + +P WSP Sbjct: 176 NGDLVWSLTTDQLAFSWNPGAKKENVDMETLYTLNSDGTGLKRITSDAAPRETSPVWSPQ 235 Query: 401 GRSLIFSR 408 G +L++ + Sbjct: 236 GDALLYDK 243 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 32/229 (13%) Query: 153 KIAHTISDDIYQ--SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 ++ + +DD + S TGE R+LF S+ + ++ L +MD DG N+R + + Sbjct: 31 RLTNHRADDTFPVWSPTGE------RVLFASDRDRFTLSRD-LYLMDPDGKNVRRVF-GK 82 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR---IGNFRSMILAPRFSS 267 + +SP+ +++AY+ ++ Y+ ID + IG+ +P +S Sbjct: 83 SEDRSAATWSPDGKQIAYSR---RELNGAYIYIGTIDGKKEERMAIGDG-----SPAWSP 134 Query: 268 NGKR-ALISVQKDEAMDIYSVDLQSNATE----RLTNTLFINISASYSPDSSQIVFESDR 322 +G + A +S +++ + I +D+++ + R +IN +S + Q+ F + Sbjct: 135 DGTQIAFLSGFENKQVRINILDVRTKKQKVLFPREAKPSWINGDLVWSLTTDQLAFSWNP 194 Query: 323 EGK------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 K E LY + S+G+ KRI+ D PVWSPQGD + + K Sbjct: 195 GAKKENVDMETLYTLNSDGTGLKRITSDAAPRETSPVWSPQGDALLYDK 243 >gi|218678398|ref|ZP_03526295.1| translocation protein TolB [Rhizobium etli CIAT 894] Length = 56 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 38/56 (67%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + APTW+P+GR L+F R+ G G +LYSIDL G NE LI TP+Y S P W M+ Sbjct: 1 MNAPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYNEQLIKTPSYGSAPAWSPLME 56 >gi|91773135|ref|YP_565827.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM 6242] gi|91712150|gb|ABE52077.1| TolB-like beta propeller protein [Methanococcoides burtonii DSM 6242] Length = 416 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 47/282 (16%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS---RDQIL-----FEPRFSPNQQKV 226 +++LFVS + + + L +MD DG++ R LT + +L + +SP ++ Sbjct: 98 TKLLFVSNATGN----HELWIMDIDGSDKRQLTYGAHLENNLLGLAGRWGISWSPGSSQI 153 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y + E+ R I+ +++ N V KD DI+ Sbjct: 154 VYVSASSEN--RNVWETVEINGKKEQMFNISK-----------------VSKD--YDIWI 192 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 VD + +LT + NI A++ D +I F S+ G +++M +GSD+ ++ + Sbjct: 193 VDHDGSNNLKLTTSRKDNIGATWRSDGEKIAFVSNESGNGGIWIMNKDGSDKIQLV---D 249 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNL----QAPTWSPS 400 S ++ WSP G I + K E + +I VM DGS ++ L +S P WSP Sbjct: 250 GSAYNIDWSPDGTKIVYVKGDHENYTSSIWVMDTDGSNKKPLTNNSKYFVSQSYPDWSPD 309 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 G ++F+ G+ +++ ++ +G ++ I+ PQW Sbjct: 310 GSKIVFNSGNIGEY--EIWIMNSDGTDQIRIDEGLM---PQW 346 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 19/194 (9%) Query: 193 LCVMDRDGANIRYLTPSR-DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + ++D DG+N LT SR D I + + +K+A+ + + + +++M+ Sbjct: 190 IWIVDHDGSNNLKLTTSRKDNI--GATWRSDGEKIAFVSNESGN-GGIWIMNKD---GSD 243 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE---AMDIYSVDLQSNATERLTNTLFINISAS 308 +I +S +G + ++ V+ D I+ +D + + LTN +S S Sbjct: 244 KIQLVDGSAYNIDWSPDGTK-IVYVKGDHENYTSSIWVMDTDGSNKKPLTNNSKYFVSQS 302 Query: 309 Y---SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 Y SPD S+IVF S G+ ++++M S+G+DQ RI + P WSP+GD I Sbjct: 303 YPDWSPDGSKIVFNSGNIGEYEIWIMNSDGTDQIRIDEG-----LMPQWSPKGDKIVTMA 357 Query: 366 FSGEKFAIGVMKKD 379 +G+K AI V+ D Sbjct: 358 INGDKMAISVINLD 371 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 47/222 (21%) Query: 263 PRFSSNGKRALIS-------VQKDEAMDIYSVDLQSNATERLTN---TLFINISASYSPD 312 P++S++G + + + D +D + +D + +L + L + ++ SPD Sbjct: 37 PQWSTDGDKIIYTSSDLENITSGDWVVDFWMMDADGSNKIQLASGDSMLGLGYNSPLSPD 96 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE--------ASYFDPVWSPQGDLIAFT 364 ++++F S+ G +L++M +GSD+++++ A + WSP I + Sbjct: 97 GTKLLFVSNATGNHELWIMDIDGSDKRQLTYGAHLENNLLGLAGRWGISWSPGSSQIVYV 156 Query: 365 KFSGEK-------------------------FAIGVMKKDGSQE-RLLVEDSNLQAPTWS 398 S E + I ++ DGS +L + TW Sbjct: 157 SASSENRNVWETVEINGKKEQMFNISKVSKDYDIWIVDHDGSNNLKLTTSRKDNIGATWR 216 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASD 439 G + F + G+ G ++ ++ +G ++ L++ AY D Sbjct: 217 SDGEKIAFVSNESGNGG--IWIMNKDGSDKIQLVDGSAYNID 256 >gi|269925257|ref|YP_003321880.1| WD40 domain protein beta Propeller [Thermobaculum terrenum ATCC BAA-798] gi|269788917|gb|ACZ41058.1| WD40 domain protein beta Propeller [Thermobaculum terrenum ATCC BAA-798] Length = 419 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 4/128 (3%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIYS+ RLT + S++P QI F SDR G Q+++M S+GS+ +++ Sbjct: 169 DIYSIRADGTGLVRLTGESSFDGMPSWAPTGEQIAFVSDRTGSLQIWIMNSDGSNPYQLT 228 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSG 401 K + DP WSP G IA+T G I + G + +L + S Q AP WSP G Sbjct: 229 YGKIIAQ-DPDWSPDGKYIAYTL--GRDTGIAKIPAKGGKPIVLTDLSYPQSAPAWSPDG 285 Query: 402 RSLIFSRK 409 + F K Sbjct: 286 SKITFMGK 293 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 107/228 (46%), Gaps = 13/228 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +I FVS+ +G ++ + +M+ DG+N LT + I +P +SP+ + +AY D Sbjct: 201 QIAFVSDR--TGSLQ--IWIMNSDGSNPYQLTYGK-IIAQDPDWSPDGKYIAYTLGRDTG 255 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I ++ + P + + AP +S +G + + + ++ ++ + Sbjct: 256 IAKIPAKGGK----PIVLTDLSYPQSAPAWSPDGSKITFMGKPGKYWQVFVMNADGSGLR 311 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPV 353 ++T+ + + PD +IV+ + + Q+++M ++G++ K+I+ E P Sbjct: 312 QITHDPTDHRFPRWMPDGKRIVYNTRKSEHVIGQIFIMNADGTNVKQITMSTEGENGRPF 371 Query: 354 WSPQGDLIAF-TKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSP 399 SP G I F + + I +M+ DGS+ +RL + P WSP Sbjct: 372 PSPDGRYIVFNSNRLDNNWEIYIMRPDGSEVKRLTNTIGDDFEPCWSP 419 >gi|32474079|ref|NP_867073.1| TolB protein [Rhodopirellula baltica SH 1] gi|32444616|emb|CAD74618.1| probable TolB protein [Rhodopirellula baltica SH 1] Length = 1074 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 31/195 (15%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDL------QSNATERLTNTLFINISASYSPDSSQIVF 318 F ++G+ S D ++Y+ +L + LT+ + + SYSPD QIVF Sbjct: 164 FRASGESRRYSWDYDPNYELYAAELDQIEPGSTKGLTALTSAMGYDAEGSYSPDGKQIVF 223 Query: 319 ESDREG---------KEQ----------LYVMQSNGSDQKRISQDKEASY-FDPVWSPQG 358 S+R +EQ LY+M ++GS+ KR++ E Y P +SP G Sbjct: 224 ASNRAAYSRELTEREREQFERDPAFMIDLYIMNADGSNVKRLTN--EPGYDGGPFFSPDG 281 Query: 359 DLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG 415 I + +F+ G I MK DGS + L E + + AP + PSG L+F+ K G Sbjct: 282 QRICWRRFAPNGATAEIFTMKTDGSDVQRLTEINAMSWAPFYHPSGEFLVFTTNKHGFAN 341 Query: 416 SKLYSIDLNGRNETL 430 +LY + +G E + Sbjct: 342 FELYLVRADGEGEPV 356 >gi|296123962|ref|YP_003631740.1| hypothetical protein Plim_3729 [Planctomyces limnophilus DSM 3776] gi|296016302|gb|ADG69541.1| WD40 domain protein beta Propeller [Planctomyces limnophilus DSM 3776] Length = 354 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 47/232 (20%) Query: 216 EPRFSPNQQKVAYATYD-DEDILRVYLMDTRID-RAPKRIGNFRSMILAPRFSSNGKRAL 273 E FSP+ Q + Y Y ++Y+ ++D + P+ + R F+ + KR L Sbjct: 56 EGYFSPDGQWIVYQAYPVGYPFYQIYVQ--KLDEKTPRLLSTGRGRTTCAYFTPDQKRIL 113 Query: 274 ISVQ-------------KDEA---------------MDIYSVDLQSNATERLTNTLFINI 305 + +DEA MD+Y+++ +RLT+T + Sbjct: 114 FASAHTDPAIDLTEKKARDEAAQGGRRRYQWDFDPHMDLYTINFDGTGMQRLTDTPGYDA 173 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAF 363 SYS D QIVF S+R+G LY+M ++GS+ I Q +D P +SP G + F Sbjct: 174 EGSYSADGKQIVFTSNRDGDADLYLMNADGSN---IRQLTNTPGYDGGPFFSPDGQWVIF 230 Query: 364 -----TKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSR 408 + + +AI V DG E L + D P + P G+SLI+SR Sbjct: 231 RSDREKEHMLQLYAISV---DGKHEVQLTKNLDEVNWCPYFHPDGKSLIWSR 279 >gi|257455248|ref|ZP_05620483.1| putative TolB periplasmic receptor [Enhydrobacter aerosaccus SK60] gi|257447210|gb|EEV22218.1| putative TolB periplasmic receptor [Enhydrobacter aerosaccus SK60] Length = 436 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 161/400 (40%), Gaps = 77/400 (19%) Query: 46 SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS 105 S + IA F + + G +V+ DL F L S + ++ ++P W Sbjct: 39 SNLQIAIVPFAGAESISG----IVTNDLTNLGQFTLDSNLPERPHSSSEVTLPV---WQH 91 Query: 106 LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS---PASWRKIAHTISDDI 162 LV G + + + + F + +V + + G + +S S R H ++D I Sbjct: 92 KAVPYLVVGNT-RSNRGNVEINFEVINVATGEVMQGLQTVTSKNNSQSLRMAGHKVADRI 150 Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKN---SLCVMDRDGAN----------IRYLTPS 209 Y+ +TG KGDF+ RI +V E +G KN L + D DG N I+ L S Sbjct: 151 YEILTGIKGDFSGRIAYVVE---TGKPKNRVSRLVISDVDGFNPKVIYEFNGTIKTLNTS 207 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 D F + P+ + Y +I + A + NF++M S +G Sbjct: 208 ADNQTFTFQVQPD--TLGYPQVMSANI---------VSGAVSNLTNFKAMNYGASVSKDG 256 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE------ 323 + S ++ IY Q + RLTN I S++PD V+ SDR Sbjct: 257 RVIFSSSFENGIPQIYLA--QGGNSRRLTNDPVGAIYPSWAPDGQSFVYTSDRAGGKKGG 314 Query: 324 GKEQLYVMQ-SNGSDQK----------RISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 K Q+Y+ + GS+Q+ RIS D K+ SY + QG ++ Sbjct: 315 NKGQIYLYNLATGSEQRLTGGGLSSMGRISNDGKKMSYLS--GANQGAVMDL-------- 364 Query: 372 AIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKK 410 GS+ V + L +AP SP+G+ I+S K Sbjct: 365 --------GSRSVTAVNNVGLSEAPGVSPNGQHYIYSNKN 396 >gi|29840730|ref|NP_829836.1| translocation protein TolB [Chlamydophila caviae GPIC] gi|32699690|sp|Q821G5|TOLB_CHLCV RecName: Full=Protein tolB; Flags: Precursor gi|29835080|gb|AAP05714.1| conserved domain protein [Chlamydophila caviae GPIC] Length = 427 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 139/310 (44%), Gaps = 18/310 (5%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILF-VSESVVSGIIKNS-LCVMDRDGANIRYL 206 +S R+ H +D I+ ++T G + +I+F +S++ G +K L +D DGAN+R L Sbjct: 119 SSNRQKIHEAADKIHYALTKVPGISSGKIVFSLSKNPQDGELKQGELWSVDYDGANLRAL 178 Query: 207 TPSRDQILFEPRFS--PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 T + + P + N Y +Y I +++L + K++ N + P Sbjct: 179 T-QENSLSITPNWMNIGNCNPYLYVSYK-YGIPKIFLGSLE-NTTGKKVLNLQGNQFMPT 235 Query: 265 FSSNGKR-ALIS---VQKDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQIVF 318 FS K A IS D + +S+ R L T + S+SPD S++VF Sbjct: 236 FSPRKKLLAFISDTYGNPDLFLQSFSLSKGVMGKPRRVLNETFGTQGNPSFSPDGSKLVF 295 Query: 319 ESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVM 376 S+R+G+ +LY++Q + Q R+ K + P WSP G IAF G + Sbjct: 296 VSNRDGRPRLYIIQIDPEIQTPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICLYD 355 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA 435 G +L + + P+W+ + L++S G+ S+LY + L + + ++ Sbjct: 356 LSTGKDYQLTTTPIDKEGPSWAIDSQHLVYSAGNSGE--SELYLLSLITQKTKKIVIGLG 413 Query: 436 YASDPQWVGF 445 P W GF Sbjct: 414 EKRFPSWGGF 423 >gi|251795982|ref|YP_003010713.1| periplasmic component of the Tol biopolymer transport system [Paenibacillus sp. JDR-2] gi|247543608|gb|ACT00627.1| periplasmic component of the Tol biopolymer transport system [Paenibacillus sp. JDR-2] Length = 285 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G+ ++ DIY++ +LTNT ++ YSPD I F S R G Sbjct: 123 WSPDGRTLAYCAERKGQYDIYTIPAIGGEETQLTNTPGLDDGPEYSPDGGYIWFNSVRTG 182 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---------- 374 Q++ M+++GS+Q +++ D+ S+F P SP G L+A+ + A G Sbjct: 183 LMQVWRMKADGSEQTQMTFDESNSWF-PHVSPDGKLVAYITYRKGDVAPGDHPANKHVEL 241 Query: 375 -VMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 +M +G + R LV+ + +WSP R L F Sbjct: 242 RLMDSNGGEYRTLVQLFGGQGTINVNSWSPDSRKLAF 278 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD + + ++R+G+ +Y + + G ++ +++ P +SP G I F Sbjct: 123 WSPDGRTLAYCAERKGQYDIYTIPAIGGEETQLTNTPGLD-DGPEYSPDGGYIWFNSVRT 181 Query: 369 EKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 + MK DGS Q ++ ++SN P SP G+ + + + GD Sbjct: 182 GLMQVWRMKADGSEQTQMTFDESNSWFPHVSPDGKLVAYITYRKGD 227 >gi|15965598|ref|NP_385951.1| hypothetical protein SMc00162 [Sinorhizobium meliloti 1021] gi|307302718|ref|ZP_07582474.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307318566|ref|ZP_07598000.1| putative TolB-like protein [Sinorhizobium meliloti AK83] gi|15074779|emb|CAC46424.1| Probable periplasmic component of the Tol biopolymer transport system [Sinorhizobium meliloti 1021] gi|306895906|gb|EFN26658.1| putative TolB-like protein [Sinorhizobium meliloti AK83] gi|306903082|gb|EFN33673.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 275 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G+ +D+ DIY++ + RLT N +S D I F S R G Sbjct: 116 WSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 + Q++ ++ +G D +RI+ +F P SP G + + G+ F + +M Sbjct: 176 RMQIWRVRPDGKDVQRITDSPYGDWF-PHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG R+L+E + P WSPSG + F R Sbjct: 235 DPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVR 270 Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%) Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KE 346 D+ + T + T + + ++SPD ++ D +LY + +GSD I Sbjct: 9 DIATGETRVVWQTERLVEAPNWSPDGKFLIINGD----GRLYRLGFDGSDPTEIDTGFAR 64 Query: 347 ASYFDPVWSPQGDLIAF---TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 D SP G + T+F AI ++ +G RL+ + WSP GR Sbjct: 65 HCNNDHGISPDGSTLVISDKTEFGSS--AIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRM 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLI-------NTPAYASDPQWVGF 445 L + + D +Y+I ++G E + + P +++D +W+ F Sbjct: 123 LAYCGIR--DQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYF 169 >gi|313677004|ref|YP_004055000.1| amidohydrolase [Marivirga tractuosa DSM 4126] gi|312943702|gb|ADR22892.1| amidohydrolase [Marivirga tractuosa DSM 4126] Length = 1146 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIYS+ ++T + ++ YSPD IVF SD+ G + ++ M + K+I+ Sbjct: 74 DIYSIPFTGGKATKITEGMPYDVHPRYSPDGKSIVFISDKSGSDNIWTMDLATEEMKQIT 133 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVEDSNLQA--PTWSP 399 +D +YF W+P G+ I K K I K+ GS +L+ + NL+ PT SP Sbjct: 134 KDDNQNYFSADWTPDGEYIIGAKGRRNIKLHI-YHKEGGSGAQLIDKPDNLKTTDPTVSP 192 Query: 400 SGRSLIFSRK 409 G+ L FS++ Sbjct: 193 DGKLLYFSKR 202 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFE 319 + PR+S +GK + K + +I+++DL + +++T N SA ++PD I+ Sbjct: 96 VHPRYSPDGKSIVFISDKSGSDNIWTMDLATEEMKQITKDDNQNYFSADWTPDGEYIIGA 155 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KF 371 R + + GS + I + DP SP G L+ F+K + ++ Sbjct: 156 KGRRNIKLHIYHKEGGSGAQLIDKPDNLKTTDPTVSPDGKLLYFSKRNSAWNYNAQFPQY 215 Query: 372 AIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 IG +DG + + PT SP G+ L++ + + +TG Sbjct: 216 QIGTYDMEDGDMATITSRYGSAFTPTISPDGKWLVYGTRFETETG 260 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRI 341 +Y +DL + +RLT F ++SPD SQIVF + ++EG LY + SNG + Sbjct: 376 LYVMDLPNGDPKRLTKHKFTEAMPAWSPDGSQIVFSTWEEKEGG-HLYKINSNGRGKAVK 434 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 A Y DP WS + I F + + + + Sbjct: 435 LTQNPALYLDPEWSYTKNRIVFNRGANQVY 464 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 11/108 (10%) Query: 341 ISQDKEA---SYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPT 396 IS +KEA D V SP G +AFT + + VM +G +RL P Sbjct: 345 ISDEKEAFVTQIRDGVPSPDGSKLAFTALN----RLYVMDLPNGDPKRLTKHKFTEAMPA 400 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQW 442 WSP G ++FS ++ + G LY I+ NGR + L PA DP+W Sbjct: 401 WSPDGSQIVFSTWEEKE-GGHLYKINSNGRGKAVKLTQNPALYLDPEW 447 >gi|320160892|ref|YP_004174116.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1] gi|319994745|dbj|BAJ63516.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1] Length = 287 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 8/207 (3%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++++DT D+ + N S ++ +G+ + + +DI+ +D Q T Sbjct: 39 IWMLDTSNDKL-LNLSNKSSDDFWQTWAPDGRYLAFTSDRSGNLDIWILDTQKEVVFNYT 97 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N ++SPD + + S+REG ++ M S+GS++ ++ P WSP Sbjct: 98 NNPEDEGWPAWSPDGKYLAYASNREGTYDIWRMNSDGSNRVNLTPGDGDDGL-PAWSPDS 156 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 I F+ + + + +G + E++ ++++ P WSP G+ + F K+DG++ Sbjct: 157 QRIVFSSNRNGNYDLYIASVNGGELEQITSDEADDIMPAWSPDGKKIAFVSKRDGNSEIY 216 Query: 418 LYSIDLNG-----RNETLINTPAYASD 439 LY I G +N TPA+ D Sbjct: 217 LYDIASKGVTNLTKNPYNDETPAWYPD 243 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 27/223 (12%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 F ++P+ + +A+ T D L ++++DT+ + N P +S +GK Sbjct: 60 FWQTWAPDGRYLAF-TSDRSGNLDIWILDTQKEVVFNYTNNPEDEGW-PAWSPDGKYLAY 117 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + ++ DI+ ++ + LT + ++SPDS +IVF S+R G LY+ N Sbjct: 118 ASNREGTYDIWRMNSDGSNRVNLTPGDGDDGLPAWSPDSQRIVFSSNRNGNYDLYIASVN 177 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS---- 390 G + ++I+ D EA P WSP G IAF V K+DG+ E L + + Sbjct: 178 GGELEQITSD-EADDIMPAWSPDGKKIAF-----------VSKRDGNSEIYLYDIASKGV 225 Query: 391 --------NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 N + P W P G ++F ++ D +YS+ +G Sbjct: 226 TNLTKNPYNDETPAWYPDGSRILFVSER-FDNQWDVYSMKPDG 267 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 21/193 (10%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDT----RIDRAPKRIGNFRSMILAPRFSSNGKRA 272 P +SP+ + +AYA+ + E ++ M++ R++ P G+ + P +S + +R Sbjct: 106 PAWSPDGKYLAYAS-NREGTYDIWRMNSDGSNRVNLTP---GDGDDGL--PAWSPDSQRI 159 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + S ++ D+Y + E++T+ +I ++SPD +I F S R+G ++Y+ Sbjct: 160 VFSSNRNGNYDLYIASVNGGELEQITSDEADDIMPAWSPDGKKIAFVSKRDGNSEIYLYD 219 Query: 333 SNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVE 388 K ++ + Y D P W P G I F +F + + + MK DGS+ R L Sbjct: 220 IA---SKGVTNLTKNPYNDETPAWYPDGSRILFVSERFDNQ-WDVYSMKPDGSEVRRLTH 275 Query: 389 DSNLQ--APTWSP 399 D LQ P W P Sbjct: 276 DE-LQEFHPMWRP 287 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 11/197 (5%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 ++++ S R L + + +I+ +D ++ L+N + +++PD + Sbjct: 13 AVLMLSACGSTPTRYLTFTIRAQNSEIWMLDTSNDKLLNLSNKSSDDFWQTWAPDGRYLA 72 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G ++++ + + + E + P WSP G +A+ + I M Sbjct: 73 FTSDRSGNLDIWILDTQKEVVFNYTNNPEDEGW-PAWSPDGKYLAYASNREGTYDIWRMN 131 Query: 378 KDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT--- 433 DGS L D + P WSP + ++FS ++G+ LY +NG I + Sbjct: 132 SDGSNRVNLTPGDGDDGLPAWSPDSQRIVFSSNRNGNY--DLYIASVNGGELEQITSDEA 189 Query: 434 ----PAYASDPQWVGFM 446 PA++ D + + F+ Sbjct: 190 DDIMPAWSPDGKKIAFV 206 >gi|302039356|ref|YP_003799678.1| putative protein TolB (fragment) [Candidatus Nitrospira defluvii] gi|300607420|emb|CBK43753.1| putative Protein TolB (fragment) [Candidatus Nitrospira defluvii] Length = 377 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 44/240 (18%) Query: 205 YLTPSRDQILFE------PRFSPNQQKVAYA---TYDDEDILRVYLMDTRIDRA-PKRIG 254 Y P ++L+ P P ++ A DD D+ V RID P+R+ Sbjct: 123 YFFPGDRRVLYSSTHLRGPNCPPKPKRDGGAYRWALDDYDLFSV-----RIDGLDPQRLT 177 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N S NGK + + +D +DIY++DL RLT + + A +SPDS Sbjct: 178 NTPGYDAEATVSPNGKSIVWTSMRDGDLDIYAMDLDGTHPRRLTQEIGYDGGAFFSPDSK 237 Query: 315 QIVFESDR--------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 +IV+ + G+ ++++M ++GS++++++ + AS F P + Sbjct: 238 RIVYRAQHPSNQEELDQYKALLAQNLVEPGRLEIFIMNADGSNKQQVTNNG-ASNFSPFF 296 Query: 355 SPQGDLIAFTKFSGEKFAIG-------VMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIF 406 P G + F + A G ++ +DGS QERL + P +SP G+ L++ Sbjct: 297 HPDGHRVIFASNVETRNAAGRPEFHLYLVTEDGSGQERLTFDGQFNSFPMFSPDGKMLVW 356 >gi|134105212|pdb|2OJH|A Chain A, The Structure Of Putative Tolb From Agrobacterium Tumefaciens Length = 297 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK +D+ DIYS D+ S RLT+ N YSPD I F S R G Sbjct: 136 WSPDGKSFTYCGIRDQVFDIYSXDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 + Q++ ++ +GS +RI+ +F P SP GD + F + + F + + Sbjct: 196 QXQIWRVRVDGSSVERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLX 254 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG L + +P WSP G + R Sbjct: 255 DXDGGNVETLFDLFGGQGTXNSPNWSPDGDEFAYVR 290 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 13/184 (7%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQ 315 + AP +S +GK L++ E + +Y + L + + +T F I SPD + Sbjct: 43 LFEAPNWSPDGKYLLLN---SEGL-LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL 98 Query: 316 IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 E GK +Y++ S G R+ SY+ WSP G + + F I Sbjct: 99 YAISDKVEFGKSAIYLLPSTGG-TPRLXTKNLPSYWH-GWSPDGKSFTYCGIRDQVFDIY 156 Query: 375 VMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 D G + RL + P +SP GR + F+ + G +++ + ++G + I Sbjct: 157 SXDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQX--QIWRVRVDGSSVERITD 214 Query: 434 PAYA 437 AY Sbjct: 215 SAYG 218 >gi|85375068|ref|YP_459130.1| hypothetical protein ELI_11205 [Erythrobacter litoralis HTCC2594] gi|84788151|gb|ABC64333.1| hypothetical protein ELI_11205 [Erythrobacter litoralis HTCC2594] Length = 1087 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 11/137 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + R+ L + +SPD S+I F SDR G + +++M+++GSD+K ++ Sbjct: 95 DIYTMPISGGTPTRIAEGLAWEVQPRFSPDGSRIAFTSDRGGGDNIWLMRTDGSDKKALT 154 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIG---VMKKDGSQERLLVE------DSN 391 ++ P WSP G IA K +G G + G LVE Sbjct: 155 KEDFRLMHQPTWSPDGQFIAAKKHYTTGRSLGTGEVWLYHVSGGGGVKLVERPSETHQKE 214 Query: 392 LQAPTWSPSGRSLIFSR 408 L P ++P G + F+R Sbjct: 215 LGEPIYAPDGSGIYFTR 231 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 298 TNTLFINIS--ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 ++T NI A+ SPD ++VFE+ +LYV G +R++ + P +S Sbjct: 382 SDTFTTNIPKFATVSPDGRRVVFET----LGKLYVKNVGGGQPRRLTSGSAIEAW-PAFS 436 Query: 356 PQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGD 413 G +AF +++ + I V +G R + + + +P +SP GR+++F ++ G Sbjct: 437 RDGRSLAFVRWTDDGLGEIVVGDANGGNLRTVTRQPGHYASPRFSPDGRTIVFEKRSGGF 496 Query: 414 TGSKLYSID 422 + YS D Sbjct: 497 LTAPEYSAD 505 >gi|108763117|ref|YP_628358.1| WD-40-like repeat-containing amidohydrolase [Myxococcus xanthus DK 1622] gi|108466997|gb|ABF92182.1| WD40-like repeat/amidohydrolase domain protein [Myxococcus xanthus DK 1622] Length = 1057 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 21/179 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + LT+ + ++ +SPD +IVF SDR G + ++V+ +GS+ + ++ Sbjct: 39 DIYVLPMGGGEAKALTSGVAWDMQPRFSPDGKRIVFTSDRGGGDNIWVVDRDGSNARAVT 98 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----VMKKDGSQERLLVEDSN----LQ 393 ++K P WSP G I K + ++G + + G + L E +N L Sbjct: 99 EEKFRLLNSPAWSPDGQFIVARKHFTARRSLGAGEVWMYHRAGGEGVQLTERTNDQKDLG 158 Query: 394 APTWSPSGRSLIFSR--------KKDGDTGSKLYSI---DLNGRN-ETLINTPAYASDP 440 P +SP GR + FS+ + + D ++Y+I DL + E I P A P Sbjct: 159 EPAFSPDGRHVYFSQDVSPGKSFEYNKDPNGQIYAIQRLDLETKEIEPFITGPGGAIRP 217 >gi|88803169|ref|ZP_01118695.1| hypothetical protein PI23P_11292 [Polaribacter irgensii 23-P] gi|88780735|gb|EAR11914.1| hypothetical protein PI23P_11292 [Polaribacter irgensii 23-P] Length = 1135 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 12/175 (6%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L R+ R G + S+ ++P +GK L S+ D +Y++ + R+T+ Sbjct: 47 LESGRMIRFNTNEGTWLSLDMSP----DGKTILFSMLGD----LYTIPFKGGKAIRITDG 98 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 L ++ SYSPD +I F SDR+G + +++M + +++++DK WSP G+ Sbjct: 99 LALDAQPSYSPDGKRIAFTSDRDGNDNVWIMDLASKETRQVTKDKRGLVESVAWSPDGEY 158 Query: 361 IAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDG 412 I K + + KD GS +L+ E +L+ P +SP + + +S + G Sbjct: 159 IVAAK-GKRNLKLHLYHKDAGSGTQLIKEPKDLKTVEPVFSPDNKYIYYSARTGG 212 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRI 341 +Y + L + ERLT I ++SP+ +IV+ SD +G LY + S G +R+ Sbjct: 383 LYVMKLPNGKPERLTKMDLIETQPNWSPNGKEIVYATWSDIDGG-HLYKVNSKGGKPQRL 441 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + A Y PVW + + I FTK S + F Sbjct: 442 TT-VSAIYNTPVWDAKTNRIVFTKGSAQSF 470 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 41/208 (19%) Query: 266 SSNGKRALISVQKDEAMDI-YSVDLQ-------------SNATERLTNTLFINISASYSP 311 S GK I V D A++I + VD+ S+ TE L N + +A SP Sbjct: 314 SYGGKIYRIPVSGDAAIEIPFEVDVALAIGPKLEFKYPISDDTELLANQIR---NAKPSP 370 Query: 312 DSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--- 367 D +QIVF + +LYVM+ NG ++ D + P WSP G I + +S Sbjct: 371 DGTQIVFNA----LNKLYVMKLPNGKPERLTKMDLIET--QPNWSPNGKEIVYATWSDID 424 Query: 368 -GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGDT------G 415 G + V K G +RL + P W ++F++ K+ T G Sbjct: 425 GGHLYK--VNSKGGKPQRLTTVSAIYNTPVWDAKTNRIVFTKGSAQSFKNAYTRAAFSGG 482 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWV 443 L I G N T I +P +V Sbjct: 483 EDLAWISSEGGNNTFIAKANGRENPHFV 510 >gi|159901043|ref|YP_001547290.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894082|gb|ABX07162.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 646 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 61/229 (26%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 ++D IY + ++LT TL N SPD QI F S+R+G+EQ+YVM+ +GS Sbjct: 374 EEDGDYQIYRIPAMGGEPQQLT-TLGSNYGGVVSPDGRQIAFTSERDGREQVYVMKVDGS 432 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAF----------------------------TKFSG 368 DQ+R++ D + P WSP G +A+ TK G Sbjct: 433 DQRRVTNDPGRCEY-PSWSPDGKQLAYAHRRLDDLKENSSTIYIQALDQTEGQQLTKMWG 491 Query: 369 ---------------------EKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLI 405 E+ + +++ DGS +++ D + WSP G+S+ Sbjct: 492 TMPTWGQQGIVFTSRDIVENIEQLGLAIIQPDGSGLKIINPTRDRDEHYAEWSPDGKSIA 551 Query: 406 FSRKKDGDTGSK-LYSIDLNGRNETL-------INTPAYASDPQWVGFM 446 + T ++ ++ ++ +G N + P ++ D +W+ F+ Sbjct: 552 YVAGDSQRTITRQIWVMNADGSNPHPLTKGLGGVTQPRWSPDGKWIVFL 600 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 29/208 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKRALISVQ- 277 SP+ +++A+ T + + +VY+M ++D + +R+ N P +S +GK+ + + Sbjct: 406 SPDGRQIAF-TSERDGREQVYVM--KVDGSDQRRVTNDPGRCEYPSWSPDGKQLAYAHRR 462 Query: 278 ----KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ--IVFESDR--EGKEQL- 328 K+ + IY L ++LT P Q IVF S E EQL Sbjct: 463 LDDLKENSSTIYIQALDQTEGQQLTKMW------GTMPTWGQQGIVFTSRDIVENIEQLG 516 Query: 329 -YVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKF---AIGVMKKDGSQ 382 ++Q +GS K I ++D++ Y + WSP G IA+ ++ I VM DGS Sbjct: 517 LAIIQPDGSGLKIINPTRDRDEHYAE--WSPDGKSIAYVAGDSQRTITRQIWVMNADGSN 574 Query: 383 ERLLVED-SNLQAPTWSPSGRSLIFSRK 409 L + + P WSP G+ ++F K Sbjct: 575 PHPLTKGLGGVTQPRWSPDGKWIVFLAK 602 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 37/226 (16%) Query: 58 IDELGGKVSEVVSKDLQ----------RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLG 107 + LG VVS D + R V+ + S ++++TN + W+ G Sbjct: 394 LTTLGSNYGGVVSPDGRQIAFTSERDGREQVYVMKVDGSDQRRVTNDPGRCEYPSWSPDG 453 Query: 108 AQVLVTGRVIKEGKDRL-RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 Q+ R + + K+ + + D + +Q+ K + + +W Sbjct: 454 KQLAYAHRRLDDLKENSSTIYIQALDQTEGQQL--TKMWGTMPTW--------------- 496 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 G++G I+F S +V I + L ++ DG+ ++ + P+RD+ +SP+ + + Sbjct: 497 -GQQG-----IVFTSRDIVENIEQLGLAIIQPDGSGLKIINPTRDRDEHYAEWSPDGKSI 550 Query: 227 AYATYDDEDIL--RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 AY D + + ++++M+ P + + PR+S +GK Sbjct: 551 AYVAGDSQRTITRQIWVMNAD-GSNPHPLTKGLGGVTQPRWSPDGK 595 >gi|224418200|ref|ZP_03656206.1| translocation protein TolB [Helicobacter canadensis MIT 98-5491] gi|253827527|ref|ZP_04870412.1| translocation protein TolB precursor [Helicobacter canadensis MIT 98-5491] gi|253510933|gb|EES89592.1| translocation protein TolB precursor [Helicobacter canadensis MIT 98-5491] Length = 426 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 154/337 (45%), Gaps = 39/337 (11%) Query: 112 VTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGE 169 V+ VI++G L V +L+DV ++ K++ SS PA + +AH ++ DI I Sbjct: 99 VSAEVIRDG---LIVNLQLYDVNAGNLVLNKEYKSSQLPA-YPFLAHKLAVDINDYIKAP 154 Query: 170 KGDFNSRILFVSESVVSG---IIKNSLCVMDRD-----GANIRYLTPSRDQILFEPRFSP 221 D+ R++ VS SG II + + ++ G NI P+++ Sbjct: 155 SVDWMQRMVVVSYYTKSGESEIISSDYTLTYKNTLISGGLNIF------------PKWAN 202 Query: 222 NQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 +Q Y T Y D+ L + + I K+I + M++A S + R L+++ +E Sbjct: 203 EEQSAFYYTKYLDKPTLFKFDL---ITGENKQILSSEGMLVASDVSKDSNRLLLTMAPNE 259 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 DIY DL + ++LTN I++SA++ D +++F SDR G ++ + +G Sbjct: 260 QADIYLYDLSNGTLKKLTNYRGIDVSANFIEDEKRVMFISDRLGYPNVFAISVDGESAGS 319 Query: 341 ISQDKEASYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 + Q + + G+ I ++ +F F + ++ R L + Q Sbjct: 320 VEQMVFHGRNNNAANAYGNYIVYSSRETSEEFGSNTFNLYLVSTKSDFIRRLSANGVNQL 379 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 P ++ G ++++ + ++ S L I LN N+TL+ Sbjct: 380 PRFAKDGETIMYIKHENNQ--SALGIIRLN-YNKTLL 413 >gi|46447484|ref|YP_008849.1| translocation protein TolB [Candidatus Protochlamydia amoebophila UWE25] gi|67461964|sp|Q6MA25|TOLB_PARUW RecName: Full=Protein tolB; Flags: Precursor gi|46401125|emb|CAF24574.1| putative TolB protein [Candidatus Protochlamydia amoebophila UWE25] Length = 469 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/305 (24%), Positives = 142/305 (46%), Gaps = 30/305 (9%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILF-VSESVVSGIIKNSLCV--MDRDGANIRYLTP 208 R++ H I+D I++++ G +G +++IL+ V +V K S V D DG N R +T Sbjct: 156 RRLIHRIADTIHKALFGVEGVASTKILYTVKTPLVDNKQKLSSEVWEADYDGENARQITQ 215 Query: 209 SRDQILFEPRFSPNQQ-----KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + P + P ++ Y +Y ++Y+ + + D +R+ + L P Sbjct: 216 EKS-FCVNPTYIPPKKGFLSGNFLYVSYQAGQS-KIYIANLK-DGKGQRLLKLKGNQLMP 272 Query: 264 RFSSN-GKRALIS---VQKDEAMDIYSVD--LQSNATERLTNTLFINISASYSPDSSQIV 317 S K A IS D + +++ + + + + L + S++PD +++ Sbjct: 273 TLSQQRDKIAFISDATGNPDLFLQLFNPETGVVGKPQQIFSAKLATQSTPSFNPDGTKVA 332 Query: 318 FESDREGKEQLYVMQ--SNGSDQKRI------SQDKEASYFDPVWSPQGDLIAFTKFSGE 369 F SD++G ++YV+ G+ K I +++E+S P WSP G IA+ + Sbjct: 333 FVSDKDGSPKIYVIAIPEPGTSLKNIKATLITKRNRESS--APAWSPDGTKIAYCSRTDG 390 Query: 370 KFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + +QE+ L + N + P+W+P+ L+++ D S+LY I+LN Sbjct: 391 IRQIWIYDFTTNQEKQLTQGPINKENPSWAPNSLHLVYNSADTND--SQLYLINLNQTEA 448 Query: 429 TLINT 433 T I + Sbjct: 449 TRITS 453 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 12/146 (8%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL--------APRFSSN 268 P F+P+ KVA+ + D + ++Y++ I + N ++ ++ AP +S + Sbjct: 322 PSFNPDGTKVAFVS-DKDGSPKIYVI--AIPEPGTSLKNIKATLITKRNRESSAPAWSPD 378 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + D I+ D +N ++LT + S++P+S +V+ S QL Sbjct: 379 GTKIAYCSRTDGIRQIWIYDFTTNQEKQLTQGPINKENPSWAPNSLHLVYNSADTNDSQL 438 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVW 354 Y++ N ++ RI+ K + P W Sbjct: 439 YLINLNQTEATRITSGKGEKRY-PNW 463 >gi|313141735|ref|ZP_07803928.1| translocation protein TolB [Helicobacter canadensis MIT 98-5491] gi|313130766|gb|EFR48383.1| translocation protein TolB [Helicobacter canadensis MIT 98-5491] Length = 417 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 154/337 (45%), Gaps = 39/337 (11%) Query: 112 VTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGE 169 V+ VI++G L V +L+DV ++ K++ SS PA + +AH ++ DI I Sbjct: 90 VSAEVIRDG---LIVNLQLYDVNAGNLVLNKEYKSSQLPA-YPFLAHKLAVDINDYIKAP 145 Query: 170 KGDFNSRILFVSESVVSG---IIKNSLCVMDRD-----GANIRYLTPSRDQILFEPRFSP 221 D+ R++ VS SG II + + ++ G NI P+++ Sbjct: 146 SVDWMQRMVVVSYYTKSGESEIISSDYTLTYKNTLISGGLNIF------------PKWAN 193 Query: 222 NQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 +Q Y T Y D+ L + + I K+I + M++A S + R L+++ +E Sbjct: 194 EEQSAFYYTKYLDKPTLFKFDL---ITGENKQILSSEGMLVASDVSKDSNRLLLTMAPNE 250 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 DIY DL + ++LTN I++SA++ D +++F SDR G ++ + +G Sbjct: 251 QADIYLYDLSNGTLKKLTNYRGIDVSANFIEDEKRVMFISDRLGYPNVFAISVDGESAGS 310 Query: 341 ISQDKEASYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 + Q + + G+ I ++ +F F + ++ R L + Q Sbjct: 311 VEQMVFHGRNNNAANAYGNYIVYSSRETSEEFGSNTFNLYLVSTKSDFIRRLSANGVNQL 370 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 P ++ G ++++ + ++ S L I LN N+TL+ Sbjct: 371 PRFAKDGETIMYIKHENNQ--SALGIIRLN-YNKTLL 404 >gi|78358671|ref|YP_390120.1| tolB protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221076|gb|ABB40425.1| tolB protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 441 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 152/338 (44%), Gaps = 17/338 (5%) Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK-IAHTISDDIYQSITG 168 ++VTG + RVE R+++ ++GK ++ + S +A D + +TG Sbjct: 111 LIVTGWPQTQQGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKFCSDFMKMLTG 170 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 F S + FVS+S + + + G ++R LT + I P +SP+ + V + Sbjct: 171 RGDFFLSTLAFVSQSRNG---QKDIWAVRPTGRDLRQLT-AVQGIALSPSWSPDGRYVIF 226 Query: 229 ATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + + L V+ RI+ + I + ++ P F + R +S+ + DI+ + Sbjct: 227 SHIGERSHALGVW---DRINNRTQLIRFPGNTVIGPTFLPD-NRVAVSLAVNGNPDIFLL 282 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + + L + I++S S ++ F S R G +++ + +RIS +E Sbjct: 283 NHIFKKQKVLEQSWGIDVSPSLDATGKKMAFVSSRLGNPNIFLKDLDSGSVRRIS--REG 340 Query: 348 SY-FDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLI 405 Y P SP G LI +++ +G+ I V G ++++ N + P+++P + Sbjct: 341 KYNTSPDISPDGTLIVYSRRTGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIA 400 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQW 442 F+ + G K+Y +G +++T ++ AS P W Sbjct: 401 FASNRSGKY--KVYLTTRHGGTPKMVDTGSHDASFPAW 436 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P S +G + S + + I+ DL + +++T + S++PDS I F S+ Sbjct: 345 SPDISPDGTLIVYSRRTGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIAFASN 404 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 R GK ++Y+ +G K + + F P W D Sbjct: 405 RSGKYKVYLTTRHGGTPKMVDTGSHDASF-PAWGKLSD 441 >gi|86135211|ref|ZP_01053793.1| putative TolB protein [Polaribacter sp. MED152] gi|85822074|gb|EAQ43221.1| putative TolB protein [Polaribacter sp. MED152] Length = 365 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 31/196 (15%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ DI+ DL+ N ++LTN + + + SP +IVF S R G +LY M +G+D K Sbjct: 150 DSFDIFVADLEGNIVKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGDLELYTMNIDGTDVK 209 Query: 340 RISQDKEASYFDPVWSPQG--------------------DLIAFTKFSGEKFAIGVMKKD 379 +I+ D+ +SP G DL+A + + + D Sbjct: 210 QIT-DELGYDGGAFFSPDGTKIIFRSSRPKTEEEIKAYKDLLAEGLVEPTEMELYICNAD 268 Query: 380 GSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGRN-------ET 429 GS R L + N +P + PSG+ ++FS + + G LY ID++G+N ET Sbjct: 269 GSDLRQLTDLGNANWSPFFHPSGKKILFSSNFEAERGFPFNLYLIDIDGKNLERVTHGET 328 Query: 430 LINTPAYASDPQWVGF 445 P +++D + + F Sbjct: 329 FDAFPVFSNDGKKLAF 344 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 43/265 (16%) Query: 189 IKNSLCVMDRDG---ANIRYLTPSRDQILFEPRFSPNQQ----------KVAYATYDDED 235 KNS+ M G Y P I++ +++ K + YD D Sbjct: 94 FKNSMPPMISTGKGRTTCAYFLPDNKHIIYASTHLVDEECPEVPLRKNGKYIWPVYDSFD 153 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I L + + +G P S G + + + + +++Y++++ + Sbjct: 154 IFVADLEGNIVKQLTNEVG----YDAEPTVSPKGDKIVFTSTRSGDLELYTMNIDGTDVK 209 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKE--------------------QLYVMQSNG 335 ++T+ L + A +SPD ++I+F S R E +LY+ ++G Sbjct: 210 QITDELGYDGGAFFSPDGTKIIFRSSRPKTEEEIKAYKDLLAEGLVEPTEMELYICNADG 269 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK---FAIGVMKKDGSQERLLVEDSN 391 SD ++++ A++ P + P G I F + F E+ F + ++ DG + Sbjct: 270 SDLRQLTDLGNANW-SPFFHPSGKKILFSSNFEAERGFPFNLYLIDIDGKNLERVTHGET 328 Query: 392 LQA-PTWSPSGRSLIFSRKKDGDTG 415 A P +S G+ L FS ++ G Sbjct: 329 FDAFPVFSNDGKKLAFSSNRNNGGG 353 >gi|116626707|ref|YP_828863.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229869|gb|ABJ88578.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 955 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 21/162 (12%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN--GSDQKRISQDKEASYFDPV 353 ++T + I AS+SPD QI F S+R G ++Y S GSD + + +A +P Sbjct: 413 QVTTVPGLAIGASFSPDGKQIAFSSNRNGWFEIYTKPSEGPGSDHQVTTDGNQA--VEPA 470 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD-- 411 WSP G IA+ + K + ++ G + E + AP WSP GR+L F + Sbjct: 471 WSPDGKWIAYHSVA--KHGLWMVPSGGGTPHRISEFGS--APAWSPDGRTLAFRSYETSS 526 Query: 412 -------GDTGSKLYSIDLNGRNETLI----NTPAYASDPQW 442 GD S ++ + +G N + N P +DP W Sbjct: 527 LALSDWPGDGESTIWIVAADGTNLQQLTQPRNPPGQHADPSW 568 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 22/166 (13%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTNTLFINISASYSPDSSQI 316 + + FS +GK+ S ++ +IY+ + ++ ++T + ++SPD I Sbjct: 419 GLAIGASFSPDGKQIAFSSNRNGWFEIYTKPSEGPGSDHQVTTDGNQAVEPAWSPDGKWI 478 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + S K L+++ S G RIS+ A P WSP G +AF + A+ Sbjct: 479 AYHS--VAKHGLWMVPSGGGTPHRISEFGSA----PAWSPDGRTLAFRSYETSSLALSDW 532 Query: 377 KKDGSQERLLV--EDSNLQA-------------PTWSPSGRSLIFS 407 DG +V + +NLQ P+WSP G+ LIF+ Sbjct: 533 PGDGESTIWIVAADGTNLQQLTQPRNPPGQHADPSWSPDGKRLIFA 578 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/231 (20%), Positives = 100/231 (43%), Gaps = 11/231 (4%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P FSP+ ++ Y D+ L V+LM+ P R+ ++SNG + S Sbjct: 707 PNFSPDGSRLNYQVQSDDATLGVWLMNADGSN-PTRVAPDLGNTNGASWASNGNALVCSF 765 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + + L + + + + +PD + V+ D ++ G Sbjct: 766 FGSGKLRFIWISLADGSRRVMEEQTRDMLRSHLTPDEKEFVY--DFGSPRNIWKRPVAGG 823 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-AP 395 ++++ ++ ++F P S G+ IA+ G++ I V+ ++G Q+RLL + A Sbjct: 824 PARQLTFGRQRNWF-PELSWDGNWIAYQVTEGDETQIAVIDRNGGQQRLLTSGPGKRFAH 882 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYAS---DPQW 442 +++ R + ++ ++G LY ID + G ++ + + A+ S P W Sbjct: 883 SFASDNRRIAYAGFENG--AWNLYWIDRITGEHKQVTHFTAFGSFVRSPAW 931 >gi|163786907|ref|ZP_02181355.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1] gi|159878767|gb|EDP72823.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1] Length = 368 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 29/195 (14%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ DI+ DL+ N ++LTN + + + SP +IVF S R G +LY M +GSD K Sbjct: 153 DSYDIFVADLEGNIVKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGDLELYTMNIDGSDVK 212 Query: 340 RISQD---KEASYFDPVWS--------PQG--------DLIAFTKFSGEKFAIGVMKKDG 380 +I+ + ++F P + P+ DL+A + + + DG Sbjct: 213 QITNELGYDGGAFFSPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPTEMELYICNADG 272 Query: 381 SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGRN-------ETL 430 S R L + N +P + PSG ++FS + + G LY ID++G+N ET Sbjct: 273 SDLRQLTDLGNANWSPFFHPSGEKILFSSNFEAERGFPFNLYLIDIDGKNLKRVTHGETF 332 Query: 431 INTPAYASDPQWVGF 445 P ++++ +++ F Sbjct: 333 DAFPVFSNNGKYLAF 347 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K + YD DI L + + +G P S G + + + + +++ Sbjct: 146 KYIWPIYDSYDIFVADLEGNIVKQLTNEVG----YDAEPTVSPKGDKIVFTSTRSGDLEL 201 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------------ 326 Y++++ + +++TN L + A +SPD ++++F S R E Sbjct: 202 YTMNIDGSDVKQITNELGYDGGAFFSPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPT 261 Query: 327 --QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK---FAIGVMKKDG 380 +LY+ ++GSD ++++ A++ P + P G+ I F + F E+ F + ++ DG Sbjct: 262 EMELYICNADGSDLRQLTDLGNANW-SPFFHPSGEKILFSSNFEAERGFPFNLYLIDIDG 320 Query: 381 SQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTG 415 + + A P +S +G+ L FS ++ G Sbjct: 321 KNLKRVTHGETFDAFPVFSNNGKYLAFSSNRNNGGG 356 >gi|197104555|ref|YP_002129932.1| hypothetical protein PHZ_c1089 [Phenylobacterium zucineum HLK1] gi|196477975|gb|ACG77503.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 1107 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 11/137 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + R+ + + +SPD +I F SDR G + ++VM ++GSD+++++ Sbjct: 109 DIYVMPISGGTPTRIAEGMAWEVQPRFSPDGKRIAFTSDRGGGDNIWVMNADGSDKRQVT 168 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIG---VMKKDGSQERLLVEDSN------ 391 +++ P WSP G IA K +G G + G LV+ N Sbjct: 169 KEEFRLLNQPAWSPDGRFIAAKKHFTTGRSLGTGEVWLYHVSGGGGVPLVKRPNEQHQKE 228 Query: 392 LQAPTWSPSGRSLIFSR 408 L P ++P G+S+ F+R Sbjct: 229 LGEPIFAPDGKSIYFTR 245 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 12/137 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A+ SPD Q+V+ES +LYV G +R+++ + ++ P WS G IAF Sbjct: 407 AAVSPDGRQVVYES----LGKLYVKPMAGGAARRLTRGDDGAFELFPAWSRDGRTIAFVS 462 Query: 366 FSGEKFA-IGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 ++ I + G R + A P +SP GR+++F + + G ++ +S Sbjct: 463 WTDAGLGRIKTVAASGGTARDVTNQPGHYARPQFSPDGRTIVFEKGEGGFLTARAWS--- 519 Query: 424 NGRNETLINTPAYASDP 440 N + PA P Sbjct: 520 --ENPGVYRVPASGGTP 534 >gi|115376904|ref|ZP_01464125.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|310825361|ref|YP_003957719.1| tol-pal system beta propeller repeat protein [Stigmatella aurantiaca DW4/3-1] gi|115366083|gb|EAU65097.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|309398433|gb|ADO75892.1| Tol-pal system beta propeller repeat protein [Stigmatella aurantiaca DW4/3-1] Length = 349 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 14/272 (5%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +L ++ +V+G + + DG L P R + P +SP+ + + A D Sbjct: 80 LLVIAARMVNGFHLEQMRLQPLDGGEPVALHPPRARTR-NPSWSPDGRWL-VAESDARSF 137 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + ++ + + + + P S +G+ ++ +IY + R Sbjct: 138 SDLVRLEPKAGTQEQPLTQVKEGCFEPAVSPDGREVAFVSSREGDPEIYVMKADGTDERR 197 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP---V 353 +T + +SPD + F S+REG+E+ ++++ +G+ + +S EA+ D Sbjct: 198 ITAFHQEDREPRWSPDGQWLSFISNREGRERYFLVRPDGTSLRAVS--GEATKLDERELA 255 Query: 354 WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 WSP + F + K + V DG L + S AP WSP G+ L+F ++ Sbjct: 256 WSPDSKKVVFVERLPEAKSRLWVAAVDGGAPVALTDGRSRDDAPAWSPDGKYLVFVAERQ 315 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 GD L+ + +G +T + T A P W+ Sbjct: 316 GDV--DLWLMRADGSGQTRLTT---AKGPDWL 342 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 VM DG + R +T + Q EPR+SP+ Q +++ + + E R +L+ R D R Sbjct: 187 VMKADGTDERRIT-AFHQEDREPRWSPDGQWLSFIS-NREGRERYFLV--RPDGTSLRAV 242 Query: 255 NFRSMILAPR---FSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISASYS 310 + + L R +S + K+ + + EA ++ + A LT+ + + ++S Sbjct: 243 SGEATKLDERELAWSPDSKKVVFVERLPEAKSRLWVAAVDGGAPVALTDGRSRDDAPAWS 302 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 PD +VF ++R+G L++M+++GS Q R++ K + P W Sbjct: 303 PDGKYLVFVAERQGDVDLWLMRADGSGQTRLTTAKGPDWL-PRW 345 >gi|284116165|ref|ZP_06386711.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] gi|283829531|gb|EFC33885.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] Length = 279 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYFDP 352 RLT+ L + +SP +I+F SDR+G LY+M ++GS+ +R+ + KE + P Sbjct: 10 RLTHHLARDGGPKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRVFK-KEVARTSP 68 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 WSP G IA++++ K I + DG +E + S P WSP G + F Sbjct: 69 TWSPDGKQIAYSRWEQGKSFIYIASIDGKKEERIALGSQ---PAWSPDGTEIAFIEGAPR 125 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 D ++ +D+ R P +P WV Sbjct: 126 DP-KRISMLDVRMRKHKFFFPP---KEPAWV 152 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/231 (21%), Positives = 98/231 (42%), Gaps = 55/231 (23%) Query: 262 APRFSSNGKRALISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 P++S +G R + S +D A D+Y +D + +R+ S ++SPD QI + Sbjct: 20 GPKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRVFKKEVARTSPTWSPDGKQIAY 79 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASY----------------------------- 349 +GK +Y+ +G ++RI+ + ++ Sbjct: 80 SRWEQGKSFIYIASIDGKKEERIALGSQPAWSPDGTEIAFIEGAPRDPKRISMLDVRMRK 139 Query: 350 ----FDP---------VWSPQGDLIAFTKFS-----GEKF---AIGVMKKDGSQERLLVE 388 F P WSP+GD +AF ++ E F I ++ +DG+ + ++E Sbjct: 140 HKFFFPPKEPAWVRHHAWSPEGDRLAFAWYNRIELRQEDFKLETIYIVNRDGTGLQQIIE 199 Query: 389 DSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 + P WSP G +L++S+ D +++ + L+G ++ P++ + Sbjct: 200 EGKRAVEPVWSPRGDALLYSQLDKNDM-QQIFKVTLDGGEPVQLSNPSFPN 249 >gi|87311184|ref|ZP_01093307.1| Periplasmic component of the Tol biopolymer transport system [Blastopirellula marina DSM 3645] gi|87286092|gb|EAQ78003.1| Periplasmic component of the Tol biopolymer transport system [Blastopirellula marina DSM 3645] Length = 343 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 4/166 (2%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R S D DI++ DL+S LT + +Y+ D ++I F SDR+G Sbjct: 123 SGTRRRYSWDFDPYTDIFAKDLKSGELTPLTTEKGYDAEGAYNKDGTKIAFCSDRDGDPD 182 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--FAIGVMKKDGSQERL 385 +Y+M ++G++QK+++ D + P SP G I F E+ I V+ DG E Sbjct: 183 IYIMDADGTNQKQLT-DAKGYDGGPFISPNGKWIVFRSDRKEEGFLQIYVIGVDGQHETA 241 Query: 386 LVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 L ++ + AP W P+ +I++ G Y + L ET+ Sbjct: 242 LTDNVGVNWAPYWHPTEPYIIWAGADHSQPGRPNYDLWLMKYEETV 287 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 16/175 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-- 322 ++ +G + +D DIY +D ++LT+ + SP+ IVF SDR Sbjct: 164 YNKDGTKIAFCSDRDGDPDIYIMDADGTNQKQLTDAKGYDGGPFISPNGKWIVFRSDRKE 223 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----FAIGVMK 377 EG Q+YV+ +G + ++ D + P W P I + + + + +MK Sbjct: 224 EGFLQIYVIGVDGQHETALT-DNVGVNWAPYWHPTEPYIIWAGADHSQPGRPNYDLWLMK 282 Query: 378 --------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K G R+ + P +SP G+ L+++ + D S+L+ D Sbjct: 283 YEETVDAIKPGKVWRITDSAAADVLPVFSPDGKQLMWTSTRTDDHSSQLFIADFQ 337 >gi|91204490|emb|CAJ70990.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1003 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 26/188 (13%) Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV--------- 317 ++G+ S DE DI+S + +R+T L + +YSPD S+IV Sbjct: 132 ASGENKRFSWDYDEHYDIFSAHRDGSNPKRMTEALGYDAEGAYSPDGSKIVFCSLRDAYP 191 Query: 318 -----------FESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 FE+D ++Y+M ++GS Q R++ + Y P +SP G I + Sbjct: 192 IEHLSAGDKKRFETDPSYFGEIYIMNADGSGQTRLTH--QPGYDGGPFFSPDGKRIIWRH 249 Query: 366 F--SGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSID 422 F +G + M DGS +R L + ++ AP + PS +IF K G +L+ +D Sbjct: 250 FKENGLLADVYTMNLDGSDKRRLTDFGSMSWAPYYHPSNTYIIFHSNKYGFANCELFIVD 309 Query: 423 LNGRNETL 430 + G+ E + Sbjct: 310 VYGKKEPV 317 >gi|148977419|ref|ZP_01814019.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] gi|145963371|gb|EDK28636.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] Length = 246 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 29/213 (13%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 F ++ + NSA P++I ++ + L VS V++ DLQRS F+ ++ Sbjct: 19 FAHAALELVITDGINSAR--PIAIVPFRWEGAEPLPHDVSAVIASDLQRSGKFSPVATSK 76 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV------------- 133 Q + + F W +LG L+TG + K + + V ++L D+ Sbjct: 77 MPQTPYSETEV-NFDAWTNLGVDSLLTGSITKNAEGQYVVNYQLIDIVRGQLTKGQSRAL 135 Query: 134 KDRKQIIGKK---FFSSPAS-----WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 D Q++ K F+ A+ R+ AH ISD +Y+ +TGEKG F +RI +V VV Sbjct: 136 SDEGQLVLSKDHVLFNKKATVPGNRLREYAHRISDLVYEELTGEKGAFLTRISYV---VV 192 Query: 186 SGIIK--NSLCVMDRDGANIRYLTPSRDQILFE 216 + K L V D DG N R + S+ + + Sbjct: 193 NDKDKYPYQLRVADYDGFNERLVLRSKQPLCLQ 225 >gi|320104230|ref|YP_004179821.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] gi|319751512|gb|ADV63272.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] Length = 327 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +++F NQ+ A DD D D P R+ + P ++ +G+R Sbjct: 167 KLVFASTHEGNQEIHWIAWSDDPDA---------PDSQPHRVTRHPGIDTQPCWTPDGQR 217 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + +++ DL+ + ERLT I+ S SPD I F + REG +++VM Sbjct: 218 IVFVTDRWGGLELAITDLEGHRVERLTRQPGIDDSPDVSPDGRWIAFTTFREGMAEVFVM 277 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +GS+ + +S++ E P W+P G + F Sbjct: 278 GIDGSNPRNLSRNPEGHDMHPRWTPDGRGVTFC 310 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 109/263 (41%), Gaps = 31/263 (11%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGA------NIRYLTPSRDQILFEPRFSPNQQKVAYA 229 R+++ S G I LC + D + L P RD F+ SP Q A Sbjct: 58 RLIYASMEPDGGSIH--LCQLQVDHPFDATRRQPKRLFPDRDDPEFQAVPSPQSQSPWLA 115 Query: 230 --------TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---PRFSSNGKRALISVQK 278 T D D++ + + + R+ +GN + P +S++G + + + Sbjct: 116 VTRVTRSGTQGDLDLV-AFDLTSNPPRSRGIMGNVEGRLSHQEWPNWSADGSKLVFASTH 174 Query: 279 DEAMDIYSV------DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + +I+ + D + R+T I+ ++PD +IVF +DR G +L + Sbjct: 175 EGNQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPDGQRIVFVTDRWGGLELAITD 234 Query: 333 SNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 G +R++ ++ D P SP G IAFT F + VM DGS R L + Sbjct: 235 LEGHRVERLT--RQPGIDDSPDVSPDGRWIAFTTFREGMAEVFVMGIDGSNPRNLSRNPE 292 Query: 392 LQ--APTWSPSGRSLIFSRKKDG 412 P W+P GR + F ++ G Sbjct: 293 GHDMHPRWTPDGRGVTFCTQRQG 315 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 41/262 (15%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRID-------RAPKRIGNFR-----SMILA 262 F P +S + +++ YA+ + D ++L ++D R PKR+ R + + Sbjct: 48 FRPVWSADGRRLIYASME-PDGGSIHLCQLQVDHPFDATRRQPKRLFPDRDDPEFQAVPS 106 Query: 263 PRFSSNGKRALISVQKDEA---MDIYSVDLQSNATE----------RLTNTLFINISASY 309 P+ S + A+ V + +D+ + DL SN RL++ + N SA Sbjct: 107 PQ-SQSPWLAVTRVTRSGTQGDLDLVAFDLTSNPPRSRGIMGNVEGRLSHQEWPNWSA-- 163 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-----DPVWSPQGDLIAFT 364 D S++VF S EG ++++ + + SQ + P W+P G I F Sbjct: 164 --DGSKLVFASTHEGNQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPDGQRIVFV 221 Query: 365 KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +G + ERL + +P SP GR + F+ ++G ++++ + + Sbjct: 222 TDRWGGLELAITDLEGHRVERLTRQPGIDDSPDVSPDGRWIAFTTFREG--MAEVFVMGI 279 Query: 424 NGRNETLI--NTPAYASDPQWV 443 +G N + N + P+W Sbjct: 280 DGSNPRNLSRNPEGHDMHPRWT 301 >gi|163788034|ref|ZP_02182480.1| WD40-like repeat/amidohydrolase domain protein [Flavobacteriales bacterium ALC-1] gi|159876354|gb|EDP70412.1| WD40-like repeat/amidohydrolase domain protein [Flavobacteriales bacterium ALC-1] Length = 1130 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 2/138 (1%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ D D+Y++ + R+T + ++ YSPD I+F SD+ G + L+ M Sbjct: 67 TIMFDMMGDLYTIPIAGGKATRITEGMPYDVHPRYSPDGKSILFISDKSGSDNLWTMDLA 126 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNL 392 +QK++++DK + WSP GD I T+ V K GS LL + S Sbjct: 127 SKEQKQLTKDKNKYHVSASWSPDGDYIVGTRGRRNIKPFIVHKDGGSGANLLSKQKASKF 186 Query: 393 QAPTWSPSGRSLIFSRKK 410 P +S G+ + FS ++ Sbjct: 187 IDPAFSADGKHIYFSARR 204 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 46/88 (52%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y +DL S +RLTN F ++SPD +QIVF + + LY + ++G Sbjct: 377 LYVMDLPSGTPKRLTNHNFTEAMPAWSPDGTQIVFTTWKPDGGHLYKVNASGRGNATQLT 436 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + Y +P WS + + IAFTK + + + Sbjct: 437 KERGIYTNPAWSYKSNRIAFTKGAAQTY 464 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFE 319 + PR+S +GK L K + +++++DL S ++LT + ++SAS+SPD IV Sbjct: 97 VHPRYSPDGKSILFISDKSGSDNLWTMDLASKEQKQLTKDKNKYHVSASWSPDGDYIVGT 156 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---------EK 370 R + V + GS +S+ K + + DP +S G I F+ G + Sbjct: 157 RGRRNIKPFIVHKDGGSGANLLSKQKASKFIDPAFSADGKHIYFSARRGAWNYNAQLPQY 216 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + ++D + E + + PT S G+ +++ + + TG Sbjct: 217 QIMSFNREDAATETVTSRYGSAFTPTLSKDGKWMVYGSRFEEHTG 261 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G IAFT + + VM G+ +RL + P WSP G ++F+ K Sbjct: 363 SPDGSQIAFTALN----RLYVMDLPSGTPKRLTNHNFTEAMPAWSPDGTQIVFTTWK--P 416 Query: 414 TGSKLYSIDLNGRNET--LINTPAYASDPQW 442 G LY ++ +GR L ++P W Sbjct: 417 DGGHLYKVNASGRGNATQLTKERGIYTNPAW 447 >gi|320161659|ref|YP_004174884.1| putative protein kinase [Anaerolinea thermophila UNI-1] gi|319995513|dbj|BAJ64284.1| putative protein kinase [Anaerolinea thermophila UNI-1] Length = 710 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 32/292 (10%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G S I FVSE +G ++ + +M DG N+R LT R+ +P +SP+ K+A+ + Sbjct: 426 GGGASEIAFVSER--TGQMQ--IWMMSADGKNLRQLTNMRNGAC-QPAWSPDGSKLAFIS 480 Query: 231 --------YDDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEA 281 Y+ I + + + P G+F P +S +GK+ + + Sbjct: 481 PCPGKREIYEGSAIYLLAMDGSEPIPLPSSPEGDFD-----PAWSPDGKKLAFTSLRTGR 535 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 I+ +DLQ+ ++ + + ++ S+SP S QI F R Q+++M +G +Q R Sbjct: 536 PSIFVMDLQTLVAREISESRYSDLQPSWSPISRQIAF-VRRISNSQIWIMSEDGENQVRF 594 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKF-SGEKFA--IGVMKKDGSQERLL-------VEDSN 391 S + + F P WS G I + + G K +G+ +D R V+ Sbjct: 595 SPPGDVTNFFPTWSWDGQAILYNQIVGGSKVPRLVGMRYEDRQSPREFRIPASGTVDIGP 654 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQW 442 + + T SP G + + DG T +Y + +NG N L P++ P W Sbjct: 655 VGSFTLSPDGFWVAYEGWPDG-TNHDIYLMTMNGATNIRLTTDPSFDYSPVW 705 >gi|310817396|ref|YP_003949754.1| amidohydrolase [Stigmatella aurantiaca DW4/3-1] gi|309390468|gb|ADO67927.1| Amidohydrolase [Stigmatella aurantiaca DW4/3-1] Length = 1093 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 12/154 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y++ + + LT ++ YSPD + I F SDR G + L++M+ +GSD + ++ Sbjct: 77 DLYTLPIAGGEAKALTTGAAWDMQPRYSPDGASIAFTSDRGGGDNLWIMKRDGSDSRPVT 136 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK-FAIGVM---KKDGSQERLLVEDSNLQ---- 393 Q+ P WSP L+A FS + G M + G + L E N Q Sbjct: 137 QESFRLLNSPTWSPDSQYLVARKHFSSRRSLGAGEMWLYHRAGGEGVQLTERPNDQKDAG 196 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKL-YSIDLNGR 426 P +SP GR L FS +D G Y+ D NG+ Sbjct: 197 EPAFSPDGRFLYFS--QDTTPGKVFEYNKDPNGQ 228 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 20/182 (10%) Query: 284 IYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y+ +L RLT T + S+S D IV+ + + K + S G + ++ Sbjct: 392 LYTRELPDGLPRRLTKQTEHFEMHPSFSRDGKSIVYTTWDDDKLGTVRVVSAGGGEGKVV 451 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---------VMKKDGSQERLLVEDSNLQ 393 + Y +P +SP G I + G G V+ KDG R L +D + Sbjct: 452 SAQPGFYLEPAFSPDGRSIVYRASGGGYLLPGLYSRDPGLYVVGKDGGTPRRLSKDG--E 509 Query: 394 APTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGR------NETLINTPAYASDPQWVGF 445 P + + F + G+ K L SI L+G ++T + D +WV F Sbjct: 510 QPHFGAGSDRVYFLAVEGGEKEDKRELRSIGLDGTAPRTHLTSAEVSTYRVSPDERWVAF 569 Query: 446 MD 447 + Sbjct: 570 QE 571 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 24/185 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PR+S +G + + +++ + + + +T F + S ++SPDS +V Sbjct: 99 MQPRYSPDGASIAFTSDRGGGDNLWIMKRDGSDSRPVTQESFRLLNSPTWSPDSQYLVAR 158 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 F S R G ++++ G + ++++ + + +P +SP G + F++ + Sbjct: 159 KHFSSRRSLGAGEMWLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKV 218 Query: 373 IGVMKKDGSQ----ERLLVEDSNLQA----------PTWSPSGRSLIFSRKKDGDTGSKL 418 K Q +RL +E L+ PT SP G+SL F R+ G S L Sbjct: 219 FEYNKDPNGQIYVIQRLNLETKELEPFITGPGGSVRPTPSPDGKSLAFVRRVRGK--SVL 276 Query: 419 YSIDL 423 +S DL Sbjct: 277 FSADL 281 >gi|226225576|ref|YP_002759682.1| hypothetical protein GAU_0170 [Gemmatimonas aurantiaca T-27] gi|226088767|dbj|BAH37212.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 380 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 30/192 (15%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R+ N+ S +GKR + + KD +DIY++++ +RLT T + +SP Sbjct: 181 RLTNYGVYTAEGVLSPDGKRIVFTSLKDGDLDIYTMNVDGTDVKRLTTTPGYDGGPWWSP 240 Query: 312 DSSQIVF-------ESD-------------REGKEQLYVMQSNGSDQKRISQDKEASYFD 351 D ++IV+ ++D R K +L+VM ++GSDQ++I++ A+ F Sbjct: 241 DGTKIVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELFVMNADGSDQRQITKLGGAN-FG 299 Query: 352 PVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIF 406 P W+P G + F+ F + ++ DG+ + + P +SP G LI+ Sbjct: 300 PSWTPDGQRVIFSSNHKNPRSRNFDLYIVGLDGNNLEQVTTNGEFDGFPMFSPDGTKLIW 359 Query: 407 SRK----KDGDT 414 + K+GDT Sbjct: 360 ASNRGAAKEGDT 371 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 24/174 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+ D RLTN SPD +IVF S ++G +Y M +G+D KR++ Sbjct: 168 DIYTADRDGQNLTRLTNYGVYTAEGVLSPDGKRIVFTSLKDGDLDIYTMNVDGTDVKRLT 227 Query: 343 QDKEASYFDPVWSPQG--------------DLIAFTKFSGE------KFAIGVMKKDGSQ 382 P WSP G DL A+ + + K + VM DGS Sbjct: 228 T-TPGYDGGPWWSPDGTKIVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELFVMNADGSD 286 Query: 383 ERLLVEDSNLQ-APTWSPSGRSLIFS--RKKDGDTGSKLYSIDLNGRNETLINT 433 +R + + P+W+P G+ +IFS K LY + L+G N + T Sbjct: 287 QRQITKLGGANFGPSWTPDGQRVIFSSNHKNPRSRNFDLYIVGLDGNNLEQVTT 340 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%) Query: 304 NISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEAS--YF--------- 350 N A +S D + F+S R+G+ +Q YVM+ +G+ ++S + + +F Sbjct: 81 NAEAYFSQDGQWLTFQSTRDGRACDQQYVMRVDGTGLTKVSVGGKTTCGWFLPGGNKLFF 140 Query: 351 ------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRS 403 D P+ D + +K+ I +DG RL SP G+ Sbjct: 141 ASTHAADSACPPRPDPSKGYVWGIDKYDIYTADRDGQNLTRLTNYGVYTAEGVLSPDGKR 200 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 ++F+ KDGD +Y+++++G + + L TP Y P W Sbjct: 201 IVFTSLKDGDL--DIYTMNVDGTDVKRLTTTPGYDGGPWW 238 >gi|320104802|ref|YP_004180393.1| peptidase S41 [Isosphaera pallida ATCC 43644] gi|319752084|gb|ADV63844.1| peptidase S41 [Isosphaera pallida ATCC 43644] Length = 1186 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 44/276 (15%) Query: 152 RKIAHTI---------SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + IAHT+ +DD + G FN + + + V + +++ + Sbjct: 254 KPIAHTVRTERDPMWFADDTLAFNSDRSGTFNLYKVDPATNEVVPLTRSTTW-------D 306 Query: 203 IRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI---GNFRS 258 +R+ + S D +I++E F + V ++ +D L + + D + R P+R+ G Sbjct: 307 VRWPSQSNDGRIVYE--FDGTLRIVTVSSGEDRG-LTIEVPDDGLTRRPERVSAAGLIED 363 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIV 317 L+P+ G+RAL + + + +++V +++ T L N+ ++ A +SPD S I Sbjct: 364 FGLSPK----GERALFAARGE----VFTVPIENGTTRALVNSSKVHAKAPIWSPDGSTIA 415 Query: 318 FESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + SD G+E+L+++ +GS R ++ A F P WSP G IAF G+ V Sbjct: 416 YLSDASGEEELWLVAQDGSKPPRQLTHGGRAMRFAPRWSPDGSAIAFVDKDGKLLVADVA 475 Query: 377 KKDGSQERLLVE--DSNLQAPT---WSPSGRSLIFS 407 + LVE DS + T WSP R L FS Sbjct: 476 TGN------LVEAADSPEERSTDHVWSPDSRFLAFS 505 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 30/188 (15%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++SV Q RLT + + +SPD S I F +G EQ+YV+ + G K+ Sbjct: 85 AGDLWSVSDQGGRATRLTAHPGLELFPKFSPDGSMIAFTGQYDGDEQVYVIPATGGVPKQ 144 Query: 341 ISQ-------DKEASYFDPV--WSPQGDLIAF-------TKFSGEKFAIGVMKKDGSQER 384 ++ Y V W+P G I F T G + + V G + Sbjct: 145 LTYYPARGPLPARWGYDHQVMGWTPDGKSILFRSLRDSWTIAEGRLYTVPV---GGGPAK 201 Query: 385 LLVEDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSKLYSIDLNG-RNETLINTP 434 LL S+ A T+SP G L +S ++ G L+ IDL + + +T Sbjct: 202 LLPPPSSGAA-TFSPDGSRLFYSPLARDFRTWKRYQGGWAQNLFIIDLKTLERKPIAHTV 260 Query: 435 AYASDPQW 442 DP W Sbjct: 261 RTERDPMW 268 Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 8/152 (5%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF-RSMILAPRFSSNGKRALIS 275 P +SP+ +AY + D ++L+ + P+++ + R+M APR+S +G A+ Sbjct: 405 PIWSPDGSTIAYLS-DASGEEELWLVAQDGSKPPRQLTHGGRAMRFAPRWSPDGS-AIAF 462 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGKEQLYVMQSN 334 V KD + + V N E + + +SPDS + F R G L++ + Sbjct: 463 VDKDGKLLVADV-ATGNLVEAADSPEERSTDHVWSPDSRFLAFSLPRPNGNRALFIWSRD 521 Query: 335 GSDQKRISQDKEASYFD---PVWSPQGDLIAF 363 + + Q +FD P W P+G+ + + Sbjct: 522 AENPEAALQQITDEFFDAFEPAWDPEGNYLYY 553 >gi|218258596|ref|ZP_03474939.1| hypothetical protein PRABACTJOHN_00594 [Parabacteroides johnsonii DSM 18315] gi|218225366|gb|EEC98016.1| hypothetical protein PRABACTJOHN_00594 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 265 FSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +++GK+ IS ++D IY++ +Q T RL + + +SPD Q+ + +DR Sbjct: 90 IAADGKQIAISHGTKEDGKSRIYTLPMQG-GTPRLITPIAPSYLHGWSPDGRQLAYCADR 148 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +G +YV+ G ++ R++ E P +SP G+ I F + MKKDGS+ Sbjct: 149 KGNYDIYVIPVEGGEEIRLTT-AEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKDGSE 207 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + + E N P SP G+S+IF GD + + L +N L PA +P Sbjct: 208 QTQMTFDETRNSWFPHISPDGKSVIFITYYKGDLEPEQH---LPNKNVELRIMPATGGEP 264 Query: 441 Q 441 + Sbjct: 265 K 265 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 20/183 (10%) Query: 244 TRIDRAPKRIGNFRSMI-LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +RI P + G R + +AP + S +G++ + DIY + ++ RLT Sbjct: 109 SRIYTLPMQGGTPRLITPIAPSYLHGWSPDGRQLAYCADRKGNYDIYVIPVEGGEEIRLT 168 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 ++ YSP I F S R G Q++ M+ +GS+Q +++ D+ + + P SP G Sbjct: 169 TAEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKDGSEQTQMTFDETRNSWFPHISPDG 228 Query: 359 DLIAF-TKFSGE----------KFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRS 403 + F T + G+ + +M G + + LV+ + +W+P R Sbjct: 229 KSVIFITYYKGDLEPEQHLPNKNVELRIMPATGGEPKTLVKLFGGQGTINVNSWAPDSRR 288 Query: 404 LIF 406 + F Sbjct: 289 VAF 291 >gi|115380583|ref|ZP_01467536.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115362407|gb|EAU61689.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 655 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 12/154 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y++ + + LT ++ YSPD + I F SDR G + L++M+ +GSD + ++ Sbjct: 65 DLYTLPIAGGEAKALTTGAAWDMQPRYSPDGASIAFTSDRGGGDNLWIMKRDGSDSRPVT 124 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK-FAIGVM---KKDGSQERLLVEDSNLQ---- 393 Q+ P WSP L+A FS + G M + G + L E N Q Sbjct: 125 QESFRLLNSPTWSPDSQYLVARKHFSSRRSLGAGEMWLYHRAGGEGVQLTERPNDQKDAG 184 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKL-YSIDLNGR 426 P +SP GR L FS +D G Y+ D NG+ Sbjct: 185 EPAFSPDGRFLYFS--QDTTPGKVFEYNKDPNGQ 216 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 20/182 (10%) Query: 284 IYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y+ +L RLT T + S+S D IV+ + + K + S G + ++ Sbjct: 380 LYTRELPDGLPRRLTKQTEHFEMHPSFSRDGKSIVYTTWDDDKLGTVRVVSAGGGEGKVV 439 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---------VMKKDGSQERLLVEDSNLQ 393 + Y +P +SP G I + G G V+ KDG R L +D + Sbjct: 440 SAQPGFYLEPAFSPDGRSIVYRASGGGYLLPGLYSRDPGLYVVGKDGGTPRRLSKDG--E 497 Query: 394 APTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGR------NETLINTPAYASDPQWVGF 445 P + + F + G+ K L SI L+G ++T + D +WV F Sbjct: 498 QPHFGAGSDRVYFLAVEGGEKEDKRELRSIGLDGTAPRTHLTSAEVSTYRVSPDERWVAF 557 Query: 446 MD 447 + Sbjct: 558 QE 559 >gi|149921634|ref|ZP_01910083.1| WD40-like repeat/amidohydrolase domain protein [Plesiocystis pacifica SIR-1] gi|149817478|gb|EDM76948.1| WD40-like repeat/amidohydrolase domain protein [Plesiocystis pacifica SIR-1] Length = 1128 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 22/180 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-I 341 D+YS+ + + LT + ++ +SPD + F SDR G + L+VM ++GSD+ R + Sbjct: 67 DLYSLPMAGGEAKALTEGVAWDMQPRFSPDGQWLAFTSDRGGGDNLWVMPADGSDEPRPV 126 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----VMKKDGSQERLL----VEDSNL 392 + + P WSP G+ + K + +IG + + G + L E + Sbjct: 127 TSESFRLITAPAWSPDGEYLVGRKHFTSRRSIGSGEMWLYHRSGGKGVQLTKKRTEQKDS 186 Query: 393 QAPTWSPSGRSLIFSR--------KKDGDTGSKLYSI---DL-NGRNETLINTPAYASDP 440 P +SP GR L FS + + D ++Y+I DL GR E+++ P A P Sbjct: 187 GEPVFSPDGRYLYFSEDMTPGGVFEYNKDPNGQIYAIRRLDLEEGRLESIVGGPGGAVRP 246 >gi|329943315|ref|ZP_08292089.1| WD40-like Beta Propeller Repeat family protein [Chlamydophila psittaci Cal10] gi|332287891|ref|YP_004422792.1| putative translocation protein tolB [Chlamydophila psittaci 6BC] gi|313848463|emb|CBY17467.1| putative TolB protein [Chlamydophila psittaci RD1] gi|325506662|gb|ADZ18300.1| putative translocation protein tolB [Chlamydophila psittaci 6BC] gi|328814862|gb|EGF84852.1| WD40-like Beta Propeller Repeat family protein [Chlamydophila psittaci Cal10] gi|328915155|gb|AEB55988.1| tolB protein, putative [Chlamydophila psittaci 6BC] Length = 427 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 75/312 (24%), Positives = 137/312 (43%), Gaps = 18/312 (5%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILF-VSESVVSGIIKNS-LCVMDRDGANIRYL 206 AS R+ H +D I+ ++T G + +I+F +S++ +K L +D DG N+R L Sbjct: 119 ASNRQKIHEAADKIHYALTSVPGISSGKIIFSLSKNPKDSELKQGELWSVDYDGGNLRPL 178 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T + + P + K Y + + + + + K++ + + P FS Sbjct: 179 T-QENSLSITPNWMNIGSKNPYLYVSYKFGIPKIFLGSLENTTGKKVLHLQGNQFMPAFS 237 Query: 267 SNGKRALISVQKDEAMD----IYSVDLQSNATER----LTNTLFINISASYSPDSSQIVF 318 K+ L++ D + + S L A + L T + S+SPD S++VF Sbjct: 238 P--KKKLLAFISDSYGNPDLFLQSFSLSKGAMGKPRRVLNETFGTQGNPSFSPDGSKLVF 295 Query: 319 ESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVM 376 S+++G+ +LY++Q + Q R+ K + P WSP G IAF G + Sbjct: 296 VSNKDGRPRLYILQIDPEIQSPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICLYD 355 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA 435 G +L + + P+W+ + L++S G+ S+LY + L + + ++ Sbjct: 356 LATGKDYQLTTTPVDKEGPSWAVDSQHLVYSAGNSGE--SELYLLSLITQKTKKIVIGLG 413 Query: 436 YASDPQWVGFMD 447 P W GF D Sbjct: 414 EKRFPSWGGFPD 425 >gi|182416392|ref|YP_001821458.1| periplasmic component of the Tol biopolymer transport system-like protein [Opitutus terrae PB90-1] gi|177843606|gb|ACB77858.1| Periplasmic component of the Tol biopolymer transport system-like protein [Opitutus terrae PB90-1] Length = 410 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 18/276 (6%) Query: 140 IGKKFFSSPASWRKIAHTISDDIYQS-ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 + + FS + + + H + Q+ G KG F +++ F+ E K + D Sbjct: 111 VASQVFSGANARQALLHAADFAVEQTNGMGLKGFFTAQLAFIGERTG----KKEVYTADL 166 Query: 199 DGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 + +T RD L PR++P+ ++ Y ++ ++ +D + + +F+ Sbjct: 167 FFGGAKQIT--RDNALALMPRWAPDGNRLLYTSFFKSGFPDIFQIDLSTYQRTTFV-SFK 223 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 RFS NG++ + + + +IY + Q R T + + S +SPD S+IV Sbjct: 224 GTNSGARFSPNGQQVAMVLSGEGTPEIYLSNAQGRQVSRKTRSDAVKSSPCFSPDGSRIV 283 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS-PQGDLIAFTKFSGEKFAIGVM 376 F E QLYVM G RI+ +P WS + IAFT +G + IGV+ Sbjct: 284 FA--MEPGPQLYVMSVAGGVPSRITSGISRYCAEPDWSRANPNKIAFTMRAG-GYQIGVL 340 Query: 377 ---KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 + G+Q D P+W GR L+++ + Sbjct: 341 DLSTRKGAQVSKAPFDG--IEPSWLADGRHLVYTAR 374 >gi|302866980|ref|YP_003835617.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315506582|ref|YP_004085469.1| peptidase s9b dipeptidylpeptidase iv domain protein [Micromonospora sp. L5] gi|302569839|gb|ADL46041.1| peptidase S9B dipeptidylpeptidase IV domain protein [Micromonospora aurantiaca ATCC 27029] gi|315413201|gb|ADU11318.1| peptidase S9B dipeptidylpeptidase IV domain protein [Micromonospora sp. L5] Length = 590 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 4/143 (2%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G R + S +++ +++++ DL++ ++ T +I A +SPD+ Q+ F S R G Sbjct: 35 ISPDGTRFVASSKRNGSVNLWFFDLRTGKWQQGTWGTGDDIEAQWSPDNEQLAFTSSRGG 94 Query: 325 KEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQ 382 + +++ + S+G ++ S E Y P WSP G +A+ G + + V G+ Sbjct: 95 HKAIWLYRLSDGQTRQLTSAGHEEEY--PSWSPDGRTVAYVGGPWGRRHFLVVSADGGAP 152 Query: 383 ERLLVEDSNLQAPTWSPSGRSLI 405 R+ E A +W+P GR L+ Sbjct: 153 RRVTTEPGRAGACSWAPDGRWLV 175 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 20/199 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P ++ +G DE I D ++ A L AS++PD +IV+ ++ Sbjct: 253 PTWTRDGNHLFFHRLVDEGAGIAVWDRRTKAVRELVPAEEKPRYASFAPDGRRIVYGTEA 312 Query: 323 EGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLI--AFTKFSGEKFAIGVMKKD 379 +G+ L ++ + G Q + EA++ P WSP G I A ++ I + Sbjct: 313 DGRSALRILDLATGVSQPVPA--GEAAF--PSWSPDGRTIACALRPDPTSRWEIATVDVA 368 Query: 380 GSQERLLVEDSN----LQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLI-- 431 G Q R+ D + L AP +++P GR L+F R + + L +DL+ GR L Sbjct: 369 GGQPRVWTADRDDLRGLHAPVSFAPDGRRLVF-RSETEPFEANLLVLDLDSGRITNLTED 427 Query: 432 ----NTPAYASDPQWVGFM 446 PA+ D + V FM Sbjct: 428 SWWDEAPAFTPDGRGVVFM 446 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 V A R+T + S++PD +V S G ++++ S + ++ D Sbjct: 145 VSADGGAPRRVTTEPGRAGACSWAPDGRWLVCHSYDTGAGAVWLLDSRTGEAIPVT-DGS 203 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + + P P +AF++ + I V + DG L+V ++ + PTW+ G L Sbjct: 204 SWDYKPTICPTRPAVAFSRSDEGRSVIWVQRLADGVGRPLVVTGADDRWPTWTRDGNHLF 263 Query: 406 FSRKKDGDTGSKLY 419 F R D G ++ Sbjct: 264 FHRLVDEGAGIAVW 277 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 10/105 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRI---SQDKEASYFDPVWSPQGDLIA 362 + SPD ++ V S R G L+ G Q+ D EA WSP + +A Sbjct: 33 GAISPDGTRFVASSKRNGSVNLWFFDLRTGKWQQGTWGTGDDIEAQ-----WSPDNEQLA 87 Query: 363 FTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 FT G AI + + DG +L + P+WSP GR++ + Sbjct: 88 FTSSRGGHKAIWLYRLSDGQTRQLTSAGHEEEYPSWSPDGRTVAY 132 >gi|262193783|ref|YP_003264992.1| amidohydrolase [Haliangium ochraceum DSM 14365] gi|262077130|gb|ACY13099.1| amidohydrolase [Haliangium ochraceum DSM 14365] Length = 1138 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 29/208 (13%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 G + S+ L+P +GK + D D+Y++ + + LT+ + ++ YSPD Sbjct: 88 GTWMSLDLSP----DGKEIVF----DMLGDLYTLPIAGGEAKPLTSGIAWDMQPRYSPDG 139 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 I F SDR G + L+++ G + +++S + P W+P G + K + ++ Sbjct: 140 RFIAFTSDRGGGDNLWIIDRQGENPRQVSSENFRLVNSPAWTPDGQFLVGRKHFTSRRSL 199 Query: 374 GVMKK-----DGSQERLLVEDSNLQ----APTWSPSGRSLIFSR--------KKDGDTGS 416 G + G Q L E N Q P +SP GR L FS+ + + D + Sbjct: 200 GAGEMWLYHIAGGQGVQLTEKQNEQKDTGEPVFSPDGRYLYFSQDSTPGPVFEYNKDPHA 259 Query: 417 KLYSI----DLNGRNETLINTPAYASDP 440 +YSI G ETLI+ P A P Sbjct: 260 GIYSIYRLDREEGHLETLISGPGGAVRP 287 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 15/180 (8%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA---PKRIGNFRSMI 260 R LT D F P FS + + + Y + DE + V ++ R R+ + G++ + Sbjct: 441 RRLTRDDDVFEFYPSFSRDGRSIVYVAWSDERLGSVRMIARRGGRSRTLTSQPGHYVEPV 500 Query: 261 LAPR-----FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 L+P + G ++ + +Y++ L ER++ + S + D + Sbjct: 501 LSPDGKHLVYRKVGASSVRAQSYTHDTGLYALSLAGGEPERISRS---GNSPHFGGDGKR 557 Query: 316 IVF-ESDREGKEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F +++ G Q + ++S G D K R+ +A+ V SP G +AF +++ A Sbjct: 558 VFFLDTEGGGSAQKFQLESVGIDGKDERVHLRSDAALEYAV-SPDGRWVAFQEYAAAYVA 616 >gi|159901044|ref|YP_001547291.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894083|gb|ABX07163.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 642 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 18/199 (9%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +A R S+G R S D I+++ + ++LT+ + + +SPD S+I FES Sbjct: 413 IASRRRSDG-RVAYSHGVDGLEQIFTISANGSDEQQLTSAPGESRAPRWSPDGSKIAFES 471 Query: 321 DREGKEQ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 DR+ +Y+M ++GS+ +R++ + P WSP G +AF + + I V+ Sbjct: 472 DRDHSNNNSFDIYIMDADGSNVQRVTAEG-GWQGGPAWSPDGTKLAFHSQTSGLYEIVVL 530 Query: 377 KKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG---RNETLI 431 +++ LL V+DS A WSP G+++ F D D+ +K+Y++ +G R T + Sbjct: 531 DLTTNKQYLLASVDDSAFWA-DWSPDGQTIAF-MTGDNDSRTKIYTVPTSGGEPRELTNL 588 Query: 432 NT-----PAYASDPQWVGF 445 T P ++ D +++ F Sbjct: 589 GTGKNRWPRWSPDGRYLAF 607 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A ++ S+D+ + A + N AS ++ + +G EQ++ + +NGSD+++ Sbjct: 388 AYNLLSLDIPTGAVSEVVPHHDDNAIASRRRSDGRVAYSHGVDGLEQIFTISANGSDEQQ 447 Query: 341 ISQDKEASYFDPVWSPQGDLIAFT----KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAP 395 ++ S P WSP G IAF + F I +M DGS +R+ E P Sbjct: 448 LTSAPGESRA-PRWSPDGSKIAFESDRDHSNNNSFDIYIMDADGSNVQRVTAEGGWQGGP 506 Query: 396 TWSPSGRSLIFSRKKDG 412 WSP G L F + G Sbjct: 507 AWSPDGTKLAFHSQTSG 523 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 17/192 (8%) Query: 262 APRFSSNGKRALISVQKDEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 APR+S +G + +D + DIY +D + +R+T ++SPD +++ Sbjct: 457 APRWSPDGSKIAFESDRDHSNNNSFDIYIMDADGSNVQRVTAEGGWQGGPAWSPDGTKLA 516 Query: 318 FESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGV 375 F S G ++ V+ + Q + S D A + D WSP G IAF T + + I Sbjct: 517 FHSQTSGLYEIVVLDLTTNKQYLLASVDDSAFWAD--WSPDGQTIAFMTGDNDSRTKIYT 574 Query: 376 MKKDGSQERLLVEDSNL-----QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + G + R L +NL + P WSP GR L F ++ G L + G+ E L Sbjct: 575 VPTSGGEPREL---TNLGTGKNRWPRWSPDGRYLAFESYRNDHWGIYLQHL-ATGKVEAL 630 Query: 431 INTPAYASDPQW 442 + + P W Sbjct: 631 SDGTRHDRWPSW 642 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 5/161 (3%) Query: 217 PRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 PR+SP+ K+A+ + + + + +Y+MD +R+ P +S +G + Sbjct: 458 PRWSPDGSKIAFESDRDHSNNNSFDIYIMDADGSNV-QRVTAEGGWQGGPAWSPDGTKLA 516 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQ 332 Q +I +DL +N L + A +SPD I F + D + + ++Y + Sbjct: 517 FHSQTSGLYEIVVLDLTTNKQYLLASVDDSAFWADWSPDGQTIAFMTGDNDSRTKIYTVP 576 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 ++G + + ++ P WSP G +AF + + + I Sbjct: 577 TSGGEPRELTNLGTGKNRWPRWSPDGRYLAFESYRNDHWGI 617 >gi|86133597|ref|ZP_01052179.1| WD40-like repeat/amidohydrolase domain protein [Polaribacter sp. MED152] gi|85820460|gb|EAQ41607.1| WD40-like repeat/amidohydrolase domain protein [Polaribacter sp. MED152] Length = 1127 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y++ R+T+ L ++ +YSPD I F SDR G + ++++ + ++++ Sbjct: 73 DLYTIPFSGGKATRITDGLALDTKPNYSPDGKSIAFASDRSGNDNVWILNLETKETRQVT 132 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNLQA--PTWSP 399 +DK + WSP G+ I K + + KD GS +L+ E ++L+ P +SP Sbjct: 133 KDKRGAVESVAWSPDGEYIVAAK-GKRNLKLHLYHKDAGSGTQLIKEPASLKTVEPVFSP 191 Query: 400 SGRSLIFSRKKDG 412 + + +S + G Sbjct: 192 DNKYIYYSSRTGG 204 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P SP G I F + K I + DG +RL D N P WSP+G+ ++++ + Sbjct: 358 PKTSPDGKHIVFNALN--KLYI-MQLPDGKPKRLTKMDVNEMQPNWSPNGKEIVYTTWSE 414 Query: 412 GDTGSKLYSIDL-NGRNETLINTPAYASDPQW 442 D G LY ++ G+ L NT A + P W Sbjct: 415 KD-GGHLYKVNAKGGKPIKLTNTSALYNTPVW 445 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 27/191 (14%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + I +P+ S +GK + + +Y + L +RLT + ++SP+ + Sbjct: 351 FANQIRSPKTSPDGKHIVFNALNK----LYIMQLPDGKPKRLTKMDVNEMQPNWSPNGKE 406 Query: 316 IVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA- 372 IV+ S+++G LY + + G +++ + A Y PVW + + I FTK S + F Sbjct: 407 IVYTTWSEKDGG-HLYKVNAKGGKPIKLT-NTSALYNTPVWDAKTNRIVFTKGSAQNFKN 464 Query: 373 ------------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + DG + + + + + P + S + S GS L S Sbjct: 465 AYTRGAFSGSEDLAWISSDGGEVNFITKTNGRRNPHFVKSDDRIYLS------NGSGLSS 518 Query: 421 IDLNGRNETLI 431 I +G +E I Sbjct: 519 IRWDGTDEKKI 529 >gi|89897845|ref|YP_514955.1| translocation protein TolB [Chlamydophila felis Fe/C-56] gi|89331217|dbj|BAE80810.1| tolB protein precursor [Chlamydophila felis Fe/C-56] Length = 437 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 24/310 (7%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILF-VSESVVSGIIKNS-LCVMDRDGANIRYLTPS 209 R+ H ++D I+ ++T G + +I+F +S++ G +K L +D DG N+R LT Sbjct: 132 RQKIHEVADKIHYALTRVPGISSGKIVFSLSKNPHDGELKQGELWSVDYDGENLRALTQE 191 Query: 210 RDQILFEPRFSPNQQKVA------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 +PN + Y +Y I +++L + + K++ N + P Sbjct: 192 NSL-----SITPNWLNIGSNNPYFYVSYK-FGIPKIFLGSLE-NTSGKKVLNLQGNQFMP 244 Query: 264 RFSSNGKR-ALIS---VQKDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQIV 317 FS K+ A IS D + +S + R L + + S+SPD S++V Sbjct: 245 VFSPRKKQLAFISDAYGNPDLFLQGFSPSQGAMGKPRRVLNESFGTQGNPSFSPDGSKLV 304 Query: 318 FESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGV 375 F S+++G+ +LY++Q + Q R+ K + P WSP G IAF G + Sbjct: 305 FVSNKDGRPRLYIIQVDPEIQTPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICLY 364 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 G +L + + P+W+ L++S G++ L S+ N+ +I Sbjct: 365 DLSTGKDYQLTTTPIDKEGPSWAIDSHHLVYSAGNSGESELYLLSLITQKTNKIVIGL-G 423 Query: 436 YASDPQWVGF 445 P W GF Sbjct: 424 EKRFPSWGGF 433 >gi|320101787|ref|YP_004177378.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] gi|319749069|gb|ADV60829.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] Length = 365 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 26/258 (10%) Query: 184 VVSGIIKNSLCVMDRDGANI----RYLTPSRDQILFEPRF-SPNQQKVAYATYDDEDILR 238 V +G K + DG +I +L P DQ EPR SP + A +D ++ + Sbjct: 96 VSTGRGKCTCAFFHPDGQSIIFASSHLDPKLDQPA-EPRAKSPAYSRDARYRWDFDEWME 154 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAP------RFSSNGKRALISVQKDEAMDIYSVDLQSN 292 ++ RA GN + AP +S +GK + + +D +IY +D Sbjct: 155 IF-------RADLEGGNLVRLTDAPGYDAEGSYSPDGKSIVFTSFRDGDAEIYIMDADGR 207 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN--GSDQKRISQDKEASYF 350 R+T+ + +SPD +I++ SDR+G + L + ++ G D+++++ + +A + Sbjct: 208 NPRRITHAPGYDGGPFFSPDGKRIIYRSDRKGNDLLQIFDNSVEGDDERQLTSN-DAVNW 266 Query: 351 DPVWSPQGDLIAF-TKFSGEKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 P + P G+ + T G + M+ K G+ RL + P +SP GR L+++ Sbjct: 267 GPYYHPDGEFFVYSTSIHGHQNYEVYMQSLKTGAMTRLTYVEGFDGLPVFSPDGRKLMWT 326 Query: 408 RK-KDGDTGSKLYSIDLN 424 K + D S+L+ D + Sbjct: 327 SKGRTADNTSQLFIADFS 344 >gi|118574576|sp|Q256H8|TOLB_CHLFF RecName: Full=Protein tolB; Flags: Precursor Length = 427 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 24/310 (7%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILF-VSESVVSGIIKNS-LCVMDRDGANIRYLTPS 209 R+ H ++D I+ ++T G + +I+F +S++ G +K L +D DG N+R LT Sbjct: 122 RQKIHEVADKIHYALTRVPGISSGKIVFSLSKNPHDGELKQGELWSVDYDGENLRALTQE 181 Query: 210 RDQILFEPRFSPNQQKVA------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 +PN + Y +Y I +++L + + K++ N + P Sbjct: 182 NSL-----SITPNWLNIGSNNPYFYVSYK-FGIPKIFLGSLE-NTSGKKVLNLQGNQFMP 234 Query: 264 RFSSNGKR-ALIS---VQKDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQIV 317 FS K+ A IS D + +S + R L + + S+SPD S++V Sbjct: 235 VFSPRKKQLAFISDAYGNPDLFLQGFSPSQGAMGKPRRVLNESFGTQGNPSFSPDGSKLV 294 Query: 318 FESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGV 375 F S+++G+ +LY++Q + Q R+ K + P WSP G IAF G + Sbjct: 295 FVSNKDGRPRLYIIQVDPEIQTPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICLY 354 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 G +L + + P+W+ L++S G++ L S+ N+ +I Sbjct: 355 DLSTGKDYQLTTTPIDKEGPSWAIDSHHLVYSAGNSGESELYLLSLITQKTNKIVIGL-G 413 Query: 436 YASDPQWVGF 445 P W GF Sbjct: 414 EKRFPSWGGF 423 >gi|269126248|ref|YP_003299618.1| serine/threonine protein kinase [Thermomonospora curvata DSM 43183] gi|268311206|gb|ACY97580.1| serine/threonine protein kinase [Thermomonospora curvata DSM 43183] Length = 676 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 17/203 (8%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALI 274 P++SP + ++A+ + V++++ A ++ N RS + +S +G Sbjct: 446 PQWSPRRDRIAFTRWSGGATSEVWVVNPDGGGAERKADGINGRSRVA---WSPDGASLAA 502 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + + +DL + E+LT+ + ++S D ++ F S R+G +QLY + Sbjct: 503 MTRTGGRAQLSVIDLSDGSVEQLTDDRSVKDDPTWSRDG-KLAFWSRRDGSQQLYWLDP- 560 Query: 335 GSDQKR----ISQDKEASYF--DPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQ-ERL 385 +D +R ++ + A + DP+WSP G +AFT +G I V++ DG+ RL Sbjct: 561 -ADPQRRWRQVTTRRVAPHGANDPIWSPDGRWLAFTVMNEAGHGHDIAVIRADGTGYRRL 619 Query: 386 LVEDSNLQAPTWSPSGRSLIFSR 408 ++ P+WSP G+ L F R Sbjct: 620 TTGPAHDMDPSWSPDGKWLAFVR 642 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 31/178 (17%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ V+ ER + + ++SPD + + + G+ QL V+ + ++++ Sbjct: 467 EVWVVNPDGGGAERKADGINGRSRVAWSPDGASLAAMTRTGGRAQLSVIDLSDGSVEQLT 526 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-------- 394 D+ DP WS G L +++ +DGSQ+ ++ ++ Q Sbjct: 527 DDRSVKD-DPTWSRDGKLAFWSR------------RDGSQQLYWLDPADPQRRWRQVTTR 573 Query: 395 ---------PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 P WSP GR L F+ + G + I +G L PA+ DP W Sbjct: 574 RVAPHGANDPIWSPDGRWLAFTVMNEAGHGHDIAVIRADGTGYRRLTTGPAHDMDPSW 631 >gi|305664788|ref|YP_003861075.1| hypothetical protein FB2170_00745 [Maribacter sp. HTCC2170] gi|88707910|gb|EAR00149.1| hypothetical protein FB2170_00745 [Maribacter sp. HTCC2170] Length = 502 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 19/170 (11%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK+I S +S +GK ++++ DIY++ ++ RLT+T ++ Sbjct: 325 VPKKITPLASSYWH-GWSPDGKTLAYCAERNDNYDIYTIPIKGGEETRLTSTEGLDDGPD 383 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFS 367 YSPD I F S R G Q++ M+++GS+Q++I+ DK +F P SP G +A+ F+ Sbjct: 384 YSPDGKYIYFNSTRTGTMQIWRMKTDGSEQEQITTDKYNDWFAHP--SPDGKWLAYVTFN 441 Query: 368 GEKFA----------IGVMKKDGSQERLLVE----DSNLQAPTWSP-SGR 402 + A + +M + + +L + + P+WSP SGR Sbjct: 442 TDVPAGDHPPNKDVMLRLMNIETREVTVLAKIFGGQGTINVPSWSPDSGR 491 >gi|94971181|ref|YP_593229.1| transcriptional regulatory protein-like [Candidatus Koribacter versatilis Ellin345] gi|94553231|gb|ABF43155.1| transcriptional regulatory protein-like protein [Candidatus Koribacter versatilis Ellin345] Length = 717 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTLFINISA 307 +RIG P S NG L Q I+ +DL+ S AT L++T + + Sbjct: 412 ERIGVGTEDAFGPSVSRNGDH-LAYTQGSSIYGIHRLDLKAPKSAATTILSSTQ-QDSAP 469 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD S++ F+S R G ++++V S+G + +R++ +++ P WSP G +AF Sbjct: 470 KLSPDGSRVAFQSWRSGTQEVWVAGSDGKNPERVTSFEKSLTGSPSWSPDGKQLAFDARP 529 Query: 368 GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDG 412 + I ++ DG Q + + + D N P WS G+ + F+ + G Sbjct: 530 EGRSHIYALRLDGGQPKAVTDGDFNDILPNWSSDGKWVYFASNRGG 575 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 58/239 (24%) Query: 262 APRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P FS +GK+ A + + D+Y +D RLTN + S S++ D IV+ S Sbjct: 334 GPAFSPDGKKIAFVRGSEGWVQDLYVMDAAGGEPTRLTNDGRMMASISWAADGKSIVYSS 393 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------------- 367 +R GK L+ + + G +RI E + F P S GD +A+T+ S Sbjct: 394 NRAGKFSLWRIPATGGTAERIGVGTEDA-FGPSVSRNGDHLAYTQGSSIYGIHRLDLKAP 452 Query: 368 ----------------------GEKFA----------IGVMKKDG-SQERLL-VEDSNLQ 393 G + A + V DG + ER+ E S Sbjct: 453 KSAATTILSSTQQDSAPKLSPDGSRVAFQSWRSGTQEVWVAGSDGKNPERVTSFEKSLTG 512 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 +P+WSP G+ L F + +G S +Y++ L+G + P ++SD +WV F Sbjct: 513 SPSWSPDGKQLAFDARPEGR--SHIYALRLDGGQPKAVTDGDFNDILPNWSSDGKWVYF 569 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 8/134 (5%) Query: 308 SYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++SPD +Q+ F + EG E +YV +++ D Y P WSP G IAF + Sbjct: 193 AFSPDGNQVAFVWNGEGGENRNIYVKIIGSETPLQLTHDAGQDY-SPTWSPDGRSIAFLR 251 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNL-----QAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 ++ I ++ G E + + + A +WSP G+ LIFS K ++ S ++ Sbjct: 252 YTDTDRGIFMVPALGGAEHKVFTPTGIVEWERNALSWSPDGKRLIFSDGKSANSPSSIFE 311 Query: 421 IDLNGRNETLINTP 434 +DL I +P Sbjct: 312 LDLETGTAKAITSP 325 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 67/128 (52%), Gaps = 3/128 (2%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF-RSMILAPRFSSNGKRALIS 275 P+ SP+ +VA+ ++ V++ + + P+R+ +F +S+ +P +S +GK+ Sbjct: 469 PKLSPDGSRVAFQSWR-SGTQEVWVAGSD-GKNPERVTSFEKSLTGSPSWSPDGKQLAFD 526 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + + IY++ L + +T+ F +I ++S D + F S+R G Q++ S G Sbjct: 527 ARPEGRSHIYALRLDGGQPKAVTDGDFNDILPNWSSDGKWVYFASNRGGAWQIWKAPSEG 586 Query: 336 SDQKRISQ 343 +++++ Sbjct: 587 GTPQQVTK 594 >gi|168703674|ref|ZP_02735951.1| MdsD protein, putative [Gemmata obscuriglobus UQM 2246] Length = 1087 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 17/159 (10%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE--------- 346 RLT F + + ++SPD +I+F SDR G LY ++S+ + + + + Sbjct: 353 RLTEHEFADSNPAWSPDGKKILFASDRGGTTDLYALESDDPEHSELVKAHKFKTTKLTAT 412 Query: 347 -ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + +P +SP GD +AF + + + +M+ +GS++R+LV + W+P G+ + Sbjct: 413 TSEELNPTFSPAGDRVAFVR----EGKLWLMRPNGSEQRVLVSAQKVLDYDWAPDGKHIA 468 Query: 406 FSRKKDGDTGSKLY--SIDLNGRNETLINTPAYASDPQW 442 + R DG +++Y + D G + + SD W Sbjct: 469 YCR-MDGSFAAEVYIQATDGTGTPVNVSRHATWNSDVSW 506 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +GK S D I++V+ +T +++ +SPD I F S+R Sbjct: 30 PDISPDGKTVAFSYLGD----IWTVEAIGGVARPVTMHEAHDVNPVFSPDGRLIAFSSNR 85 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG----VMKK 378 G+ ++V+ + G +R++ D W+P G + F+ + I V+ Sbjct: 86 FGQYDVFVVSAAGGKPRRLTFDSAPDMVT-GWTPDGKGVVFSSPRSVAYPINTECFVVPA 144 Query: 379 DGSQERLLVEDSNL---QAPTWSPSGRSLIFSR 408 +G ER L NL + ++P+G ++ F R Sbjct: 145 EGGAERKL----NLFEAKEAYFAPTGGAVAFVR 173 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 43/223 (19%) Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 K+ T S+++ + + GD R+ FV E L +M +G+ R L ++ Sbjct: 408 KLTATTSEELNPTFS-PAGD---RVAFVRE--------GKLWLMRPNGSEQRVLVSAQKV 455 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP---KRIGNFRSMILAPRFSSNG 269 + ++ ++P+ + +AY D VY+ T P R + S + R +NG Sbjct: 456 LDYD--WAPDGKHIAYCRMDGSFAAEVYIQATDGTGTPVNVSRHATWNSDVSWSR--TNG 511 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLT---------NTLFINI------SASY---SP 311 K A + Q+ A ++ V LQ + T + L + + SA Y SP Sbjct: 512 KLAFVG-QRRGAYGVHVVSLQKPVADGGTRPPADQIDWDDLHLRVERPTTMSAEYGTVSP 570 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 D SQ+ F S G + L+V+ SNG R++ + P W Sbjct: 571 DGSQVAFRSASSG-DDLWVVSSNGQALTRMTNGNQT----PSW 608 Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust. Identities = 70/352 (19%), Positives = 129/352 (36%), Gaps = 68/352 (19%) Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 FSSP R +A+ I+ + + + E G LF ++ ++ + G R Sbjct: 125 FSSP---RSVAYPINTECF-VVPAEGGAERKLNLFEAKEAYFAPTGGAVAFVRGPGTWYR 180 Query: 205 --YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR----IDRAPKRIG--NF 256 Y S D I N ++V T+D +D ++ D R + + + G N Sbjct: 181 RGYRGSSNDDIWISGPDGSNPKRVT--TFDGQDSYPMFAPDARQLFYVTESQSKPGCANV 238 Query: 257 RSMILAPRFSSNGKRALISVQKDEAM------------------DIYSVDLQSNATERLT 298 LAP F+ G I+ D+ + D++ +S+ R Sbjct: 239 VRQPLAPDFTPAGPAKRITAHDDDTVRRARLSANGDWIVYELGADLWVASARSDLPPR-- 296 Query: 299 NTLFINISA----------SYSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQ 343 L I ++A +Y+ D+++ D + QL++ + G + Sbjct: 297 -KLAIEVNADDKSNTERTHTYTRDATEYALAPDEQHAVLVIHGQLFLTKVPGGGKATRLT 355 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--------- 394 + E + +P WSP G I F G + ++ D + LV+ + Sbjct: 356 EHEFADSNPAWSPDGKKILFASDRGGTTDLYALESDDPEHSELVKAHKFKTTKLTATTSE 415 Query: 395 ---PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 PT+SP+G + F R+ KL+ + NG + ++ + D W Sbjct: 416 ELNPTFSPAGDRVAFVRE------GKLWLMRPNGSEQRVLVSAQKVLDYDWA 461 >gi|222148505|ref|YP_002549462.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium vitis S4] gi|221735491|gb|ACM36454.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium vitis S4] Length = 277 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G+R +D+ DIY++ + + +RLT+ N +S D I F S R G Sbjct: 117 WSPDGQRVCYCGIRDQVFDIYTISVDGSDEQRLTHGEGRNDGPDWSADGEWIYFNSSRSG 176 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ ++ +G D +R++ D + +F P P + F + + F + +M Sbjct: 177 TMQIWRIRPDGRDVQRLTDDGQGDWF-PHPCPNNRKLVFISYDADVFDHPRDLHVRMRLM 235 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG L E + P+WSP G+ + R Sbjct: 236 DMDGGNVETLFELFGGQGTINVPSWSPDGQEFAYVR 271 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 16/196 (8%) Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + +Y ++TR R + ++ AP +S +G+ + + D+ + +Y + L + Sbjct: 5 VEIYNIETRQSRI---VWQTERLVEAPNWSRDGQFLIFN---DDGL-MYRLPLVGQSVPE 57 Query: 297 LTNTLF---INISASYSPDSSQI-VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +T F N SPD + + + GK LY++ + G +I+++ + + Sbjct: 58 KIDTGFATQCNNDHGLSPDGQWLAICDKVEHGKTCLYILPAKGGTPIQITENLPSYWHG- 116 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 WSP G + + + F I + DGS E RL + P WS G + F+ + Sbjct: 117 -WSPDGQRVCYCGIRDQVFDIYTISVDGSDEQRLTHGEGRNDGPDWSADGEWIYFNSSRS 175 Query: 412 GDTGSKLYSIDLNGRN 427 G +++ I +GR+ Sbjct: 176 GTM--QIWRIRPDGRD 189 >gi|332995298|gb|AEF05353.1| amidohydrolase [Alteromonas sp. SN2] Length = 1111 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 20/165 (12%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + S+ +AP NGK + D DIY V++ +T NI S SPD S+ Sbjct: 63 WSSLDIAP----NGKYMVF----DMLGDIYKVNIDGGDATPITQDFAWNIHPSISPDGSK 114 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------S 367 I F SDR+G L++M SNG + ++++++K P WSP G+ + +K + Sbjct: 115 IAFISDRDGINNLWIMDSNGENLRQVTKEKNNLIHSPKWSPDGEYLLVSKGIMSSRSIPA 174 Query: 368 GEKFAIGVMKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSR 408 GE + DG Q + + N+ P +S G+ + F+ Sbjct: 175 GEIWMYHNTGGDGLQIKARNHGKKDQQNIADPVFSHDGKHIYFTE 219 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 17/160 (10%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D ++ LT D + PRFS + + + Y T++D+++ V ++ R + K Sbjct: 398 LYVKDVKSGKMKRLTKQNDHGEYYPRFSNDGKAIVYTTWNDDELGSVRIVSARGGKG-KV 456 Query: 253 IGNFRSMILAPRFSSNGKRA---------LISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 I + P FSS+ ++ L+ + IY DL +++++ Sbjct: 457 ITKQPGHYIEPSFSSDREKVVYRKFTGGYLLDPKYSVDPGIYVADLDRKTEKKVSDG--- 513 Query: 304 NISASYSPDSSQIVFESDREG----KEQLYVMQSNGSDQK 339 I+ ++ D+S++ F G + QL + G+D++ Sbjct: 514 GINPHFADDNSRVYFTESVGGTPYRETQLSSVNLQGNDKR 553 >gi|213028843|ref|ZP_03343290.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 141 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 7 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQT-NGGQFPYELRVSDYDGYN-QFVVHRSP 64 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 Q L P +SP+ K+AY T+ E ++ T + A +++ +F AP FS +G + Sbjct: 65 QPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTK 122 Query: 272 ALISVQKDEAMDIY 285 ++ K ++++Y Sbjct: 123 LAFALSKTGSLNLY 136 >gi|330443987|ref|YP_004376973.1| TolB protein [Chlamydophila pecorum E58] gi|328807097|gb|AEB41270.1| TolB protein precursor [Chlamydophila pecorum E58] Length = 423 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 30/315 (9%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSE--SVVSGIIKNSLCVMDRDGANIRYLTPS 209 R+ H +D ++ ++TG G + RI+F + + L +D DG N+ LT Sbjct: 118 RQQIHQAADIVHHALTGIPGISSGRIIFSRSKGGKTQELKQGELWAVDYDGGNLVPLT-K 176 Query: 210 RDQILFEPRFS--PNQQKVAYATYD--DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + P+++ Y +Y I L +T +A GN + +P Sbjct: 177 EASLSVTPKWADLSADSPYFYVSYKLGVPKIFLGSLKNTEGKKALSLTGNQLMPVYSP-- 234 Query: 266 SSNGKRALISVQKD---------EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQ 315 K+ L++ D +A YS L RL N F S S++P SQ Sbjct: 235 ----KKKLLAFIADTYGNPDLFIQAFSPYSGFL--GRPRRLLNETFGTQGSPSFNPQGSQ 288 Query: 316 IVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +VF S+R+G+ +LY+M + Q R+ K + P WSP G IAF I Sbjct: 289 LVFVSNRDGRPRLYIMNLDPEPQSPRLLTKKYRNCSCPTWSPDGKKIAFCSVIKGTRQIC 348 Query: 375 VMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN 432 V G +L + + P+W+ R L+FS + S+LY + L + + ++ Sbjct: 349 VYDLTSGEGSQLTTSPQDKEGPSWAADSRHLVFSSGNAEE--SELYLLSLITKKTKKIVI 406 Query: 433 TPAYASDPQWVGFMD 447 P W F+ Sbjct: 407 GSGEKRFPSWGAFLH 421 >gi|320106330|ref|YP_004181920.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319924851|gb|ADV81926.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 760 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 59/318 (18%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT-PSRDQILFEPRFSPNQQK 225 TG + + L VS+ SG L D + + LT PS D+ P S + + Sbjct: 326 TGPSWSSDGKGLIVSDVAPSGR-GMGLYRFDLNTHELHSLTNPSSDERDLNPTLSSDGKW 384 Query: 226 VAYA---TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +AYA +YD D+ L+D R +R+ + + + +S+ + + S + A Sbjct: 385 LAYARFSSYDSSDVFIRSLLDGR----ERRLTSDHTDVQGLAWSAGNREIVFSSNRGGAY 440 Query: 283 DIYSVDLQSNATERLTNT---------------------------LFINIS--------- 306 ++++ L ++ T L I +S Sbjct: 441 GLWTIGLDGGNPSPISATGESAIQPAISRDGQFLVYADFTLRSEILKIGVSQAGTSVPPV 500 Query: 307 -----------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 A +SPD S+I F SDR GK +L+V ++G + +++ S P WS Sbjct: 501 SVAPSIRSSHSAQFSPDGSRIAFVSDRSGKWELWVSSADGKEASQLTNFDTGSVGSPRWS 560 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 P G IAF + AI V+ DG R L + + P WS G+ + F + G Sbjct: 561 PDGLSIAFDARPNGRSAIFVISPDGQGLRNLSPKGQEEKQPAWSSDGKWIYFDSNRAGSM 620 Query: 415 GSKLYSIDLNGRNETLIN 432 +L+ + +G + T ++ Sbjct: 621 --QLWKMTTSGSDATSVS 636 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWS 355 LT L + + SPD + F + G +YV++ G + + + PVWS Sbjct: 218 LTTFLGESYQPNVSPDGKSVAFIWNNGGSTYSVYVVRPGGKPLRVTA--GPGTDIHPVWS 275 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---------ED----SNLQAPTWSPSGR 402 P G+LIAF + + + V+ G E L ED N P+WS G+ Sbjct: 276 PDGNLIAFLRVTSSGSQVRVVSFPGGSENALFALRNGRPWSEDLLGIRNDTGPSWSSDGK 335 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRN-ETLIN--------TPAYASDPQWVGF 445 LI S G LY DLN +L N P +SD +W+ + Sbjct: 336 GLIVSDVAPSGRGMGLYRFDLNTHELHSLTNPSSDERDLNPTLSSDGKWLAY 387 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 56/197 (28%) Query: 262 APRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P +SS+GK ++S M +Y DL ++ LTN Sbjct: 327 GPSWSSDGKGLIVSDVAPSGRGMGLYRFDLNTHELHSLTNP------------------- 367 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK- 378 SD++ + +P S G +A+ +FS + ++ Sbjct: 368 ---------------SSDERDL---------NPTLSSDGKWLAYARFSSYDSSDVFIRSL 403 Query: 379 -DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT---- 433 DG + RL + +++Q WS R ++FS + G G L++I L+G N + I+ Sbjct: 404 LDGRERRLTSDHTDVQGLAWSAGNREIVFSSNRGGAYG--LWTIGLDGGNPSPISATGES 461 Query: 434 ---PAYASDPQWVGFMD 447 PA + D Q++ + D Sbjct: 462 AIQPAISRDGQFLVYAD 478 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-MILAPRFSSNGKRALISV 276 +FSP+ ++A+ + D +++ A ++ NF + + +PR+S +G Sbjct: 513 QFSPDGSRIAFVS-DRSGKWELWVSSADGKEA-SQLTNFDTGSVGSPRWSPDGLSIAFDA 570 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + + I+ + L+ ++S D I F+S+R G QL+ M ++GS Sbjct: 571 RPNGRSAIFVISPDGQGLRNLSPKGQEEKQPAWSSDGKWIYFDSNRAGSMQLWKMTTSGS 630 Query: 337 DQKRISQ 343 D +SQ Sbjct: 631 DATSVSQ 637 >gi|73669137|ref|YP_305152.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str. Fusaro] gi|72396299|gb|AAZ70572.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str. Fusaro] Length = 615 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 25/191 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 I S MD DG+N + I SP+ K+A + D+ Y +D + + Sbjct: 159 IGGSYWEMDSDGSNKHNI--GNMGIANGIALSPDASKIAICAHGPADV--DYYID--VGK 212 Query: 249 APKRIGNFR------------SMILAPRFSS----NGKRALISVQKDEAMDIYSVDLQSN 292 K + +FR S I AP S GK S +DE +IY V Sbjct: 213 VGKDLTSFRYGLITHQTQSRQSQIWAPDGSKIVYYAGKNE--SYYEDENSEIYIVKADGT 270 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +LT+ + S +SPD S+IVF SD+ G E +++M ++G ++ +++ D + F P Sbjct: 271 GRIQLTSDSANDNSPVFSPDGSKIVFVSDKAGNEDIWIMDADGKNKVQLTSDPASDSF-P 329 Query: 353 VWSPQGDLIAF 363 VWSP G IAF Sbjct: 330 VWSPDGKKIAF 340 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 25/251 (9%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFS----PNQQKVAYATYDDEDILRVYLMDTR 245 ++ L +M+ +G + L D I + + P K+ YA +E + MD+ Sbjct: 113 RSDLWIMNSNGEGKKQL---LDTIWYRYYYIYTWFPTGSKILYAEIYEEIGGSYWEMDS- 168 Query: 246 IDRAPKR-IGNF---RSMILAPRFSSNGKRALISVQKDEAMDIYSV--DLQSNATERLTN 299 D + K IGN + L+P S A D +D+ V DL S +T+ Sbjct: 169 -DGSNKHNIGNMGIANGIALSPDASKIAICAHGPADVDYYIDVGKVGKDLTSFRYGLITH 227 Query: 300 TLFINISASYSPDSSQIVFESDR------EGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 S ++PD S+IV+ + + + ++Y+++++G+ + +++ D A+ PV Sbjct: 228 QTQSRQSQIWAPDGSKIVYYAGKNESYYEDENSEIYIVKADGTGRIQLTSD-SANDNSPV 286 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 +SP G I F I +M DG + L D + P WSP G+ + F + G Sbjct: 287 FSPDGSKIVFVSDKAGNEDIWIMDADGKNKVQLTSDPASDSFPVWSPDGKKIAFWSNRGG 346 Query: 413 DTGSKLYSIDL 423 + + +Y++ L Sbjct: 347 N--NNIYTLTL 355 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 76/150 (50%), Gaps = 14/150 (9%) Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 DL++ ++ + + ++ + +SPD +I+F RE LY + S+G+ + +++ K Sbjct: 29 DLEAEKLTKVASNVALDSNPVWSPDGKEILFS--RE--NGLYKVFSDGTGEMKLTSTKGK 84 Query: 348 SYF-DPVWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQERLLVED---SNLQAPTWS 398 ++ D WSP G I++ + +G + + +M +G ++ L++ TW Sbjct: 85 NFTSDYAWSPDGSKISYIENRYDTAAGPRSDLWIMNSNGEGKKQLLDTIWYRYYYIYTWF 144 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 P+G ++++ + + G + +D +G N+ Sbjct: 145 PTGSKILYAEIYE-EIGGSYWEMDSDGSNK 173 >gi|154494285|ref|ZP_02033605.1| hypothetical protein PARMER_03636 [Parabacteroides merdae ATCC 43184] gi|154085969|gb|EDN85014.1| hypothetical protein PARMER_03636 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 9/181 (4%) Query: 265 FSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +++GK+ IS ++D IY++ +Q T RL + + +SPD Q+ + +DR Sbjct: 90 IAADGKQIAISHGTKEDGKSRIYTLPMQG-GTPRLITPIAPSYLHGWSPDGRQLAYCADR 148 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +G +YV+ G ++++++ E P +SP G+ I F + MKKDGS+ Sbjct: 149 KGNYDIYVIPVEGGEERQLTT-AEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKDGSE 207 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + + E N P SP G+S+IF GD + L +N L PA P Sbjct: 208 QTQMTFDETRNSWFPHVSPDGKSVIFITYYKGDLEPGQH---LPNKNVELRIMPATGGKP 264 Query: 441 Q 441 + Sbjct: 265 K 265 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 20/183 (10%) Query: 244 TRIDRAPKRIGNFRSMI-LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +RI P + G R + +AP + S +G++ + DIY + ++ +LT Sbjct: 109 SRIYTLPMQGGTPRLITPIAPSYLHGWSPDGRQLAYCADRKGNYDIYVIPVEGGEERQLT 168 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 ++ YSP I F S R G Q++ M+ +GS+Q +++ D+ + + P SP G Sbjct: 169 TAEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKDGSEQTQMTFDETRNSWFPHVSPDG 228 Query: 359 DLIAF-TKFSGE----------KFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRS 403 + F T + G+ + +M G + + LV+ + +W+P + Sbjct: 229 KSVIFITYYKGDLEPGQHLPNKNVELRIMPATGGKPKTLVKLFGGQGTINVNSWAPDSKH 288 Query: 404 LIF 406 + F Sbjct: 289 IAF 291 >gi|325110069|ref|YP_004271137.1| peptidase M28 [Planctomyces brasiliensis DSM 5305] gi|324970337|gb|ADY61115.1| peptidase M28 [Planctomyces brasiliensis DSM 5305] Length = 1051 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 106/242 (43%), Gaps = 29/242 (11%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 E R SP K + D RV T D+ K + L R + KR S Sbjct: 117 EERISPGVGKTT-CGWIHPDGERVLFASTHQDKEAKAK---QKQELDAREAGEQKR--YS 170 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR---------EGKE 326 D ++++ + ++ +LTN L + SYSPD S I F S+R E KE Sbjct: 171 WDYDPTYELFAYNRKTKQYTQLTNELGYDAEGSYSPDGSLIAFASNRGAYERELTAEEKE 230 Query: 327 QL----------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIG 374 QL YVM ++GS+ ++++ D P +SP G I + +F G I Sbjct: 231 QLERDPAAFMEIYVMNADGSNVRQLT-DVFGYDGGPFFSPDGKRICWRRFDKHGATAEIM 289 Query: 375 VMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 M DGS R L + + AP + PSG L+F+ + G + +LY + +G+ + + T Sbjct: 290 TMNVDGSDVRQLTDWQVMSWAPFYHPSGEYLVFTTNRHGFSNFELYLVAADGQQDPIRVT 349 Query: 434 PA 435 A Sbjct: 350 NA 351 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 12/142 (8%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE--PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + VM+ DG+N+R LT D ++ P FSP+ +++ + +D +M +D + Sbjct: 242 IYVMNADGSNVRQLT---DVFGYDGGPFFSPDGKRICWRRFDKHGAT-AEIMTMNVDGSD 297 Query: 251 KR-IGNFRSMILAPRFSSNGKRALISVQKD--EAMDIY--SVDLQSNATERLTNTLFINI 305 R + +++ M AP + +G+ + + + ++Y + D Q + R+TN + Sbjct: 298 VRQLTDWQVMSWAPFYHPSGEYLVFTTNRHGFSNFELYLVAADGQQDPI-RVTNADGFDG 356 Query: 306 SASYSPDSSQIVFESDREGKEQ 327 ++SPD + +V+ S+R +Q Sbjct: 357 LPAFSPDGNTLVWTSNRTDAKQ 378 >gi|298675386|ref|YP_003727136.1| WD40 domain-containing protein beta Propeller [Methanohalobium evestigatum Z-7303] gi|298288374|gb|ADI74340.1| WD40 domain protein beta Propeller [Methanohalobium evestigatum Z-7303] Length = 616 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 25/260 (9%) Query: 192 SLCVMDRDGANIRYL-----TP-----SRDQILFEPRFSPNQQKVAYATYD---DEDILR 238 +L +M+ DG +I+ + TP D+++ P +SP+ Y + + + +IL Sbjct: 101 ALYIMNADGFDIKRIAWGEYTPYTRKVGNDKLIGLPSWSPDGDVFTYTSEELAKNGNILG 160 Query: 239 VYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATE 295 +L+ + G+F S + ++S +G L +K E Y +DL N T Sbjct: 161 EFLIVDADNLNTIEKGSFISNKIDFIKKWSPDGSYLLYRGYKKGEGPKCYLLDLTRNITR 220 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R T + ++SP ++I F + +G E +V + + K I K +S +P+WS Sbjct: 221 RFPITQYNPEDITWSPKGNKIAFLGEEKGNESAFVYNLDNGNLKNIFSTKNSSIHNPLWS 280 Query: 356 PQGDLIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P G +AF+K + I + +G +L + W S + L+++ Sbjct: 281 PDGRKLAFSKIEDNNVKDVYVIDINVVNGRPYKLTTLHGGILVE-WLDSEK-LLYTEYSP 338 Query: 412 GDTGSKLYSIDLNGRNETLI 431 D LYSI +N RN+TL+ Sbjct: 339 EDN---LYSISVNSRNKTLL 355 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 23/234 (9%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAP 250 S V + D N++ + +++ + P +SP+ +K+A++ +D ++ VY++D + + P Sbjct: 252 SAFVYNLDNGNLKNIFSTKNSSIHNPLWSPDGRKLAFSKIEDNNVKDVYVIDINVVNGRP 311 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASY 309 ++ IL S L+ + ++YS+ + S N T +T I SY Sbjct: 312 YKLTTLHGGILVEWLDS---EKLLYTEYSPEDNLYSISVNSRNKTLLYNSTNESGIDYSY 368 Query: 310 SPDS-----SQIVFESDREG---KEQLYV-----MQSNGSDQKRISQDKEASYFDPVWSP 356 S S + VF ++ G K Y+ M+++GSD K + + F+ W Sbjct: 369 SDHSFVDPTGEFVFVEEQIGLNYKTHGYINKFTLMKTDGSDTKHWRINPQG--FE--WCG 424 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 L+ + + V S+ + V S+++ W+P+GR L F+R + Sbjct: 425 DDLLLEVVTENDTNKLVMVNASTKSESNISVNGSHIEKINWNPTGRYL-FTRNQ 477 >gi|94494977|ref|ZP_01301558.1| hypothetical protein SKA58_00750 [Sphingomonas sp. SKA58] gi|94425243|gb|EAT10263.1| hypothetical protein SKA58_00750 [Sphingomonas sp. SKA58] Length = 978 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 23/180 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +A S +GK + +Q ++ + R+T+ ++PD S +++ + Sbjct: 39 MAVSASPDGKWLAVDLQGS----LWIIPAAGGKARRITDYFNDARQPVWAPDGSHLLYFA 94 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKF------- 371 R+G L+ ++ +GSD +R++Q +Y D PV+SP G IAF+ + Sbjct: 95 YRDGGYDLWTIKPDGSDMRRLTQ---GAYDDREPVYSPDGKTIAFSSDRSGNYDIWTMDV 151 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 A G MK+ S R ED + PTWSP GR + ++ +G G LY DL E+L+ Sbjct: 152 ATGAMKQISSNPR---ED---RMPTWSPDGRRVAYA-GAEGMMGGALYVTDLATGQESLL 204 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I PR S +G R A +++ D+Y V + E LT ++ A +SPD +IVF Sbjct: 309 ITHPRLSPDGSRIAFVALG-----DLYIVSSKGGTPENLTKDAALDADADWSPDGRRIVF 363 Query: 319 ESDREGK-EQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 SDR G QL++ G D++ + D + WSP G IAF G GV Sbjct: 364 SSDRVGGLPQLFIKDLKTGKDRQLTNMDTQP--LGAAWSPDGKQIAFIDVDGRWGVAGVC 421 Query: 377 KKD---GSQERLLVEDSNLQAPTWSPSGRSLIFS 407 D G RL +P+WS G+ ++ S Sbjct: 422 VVDVASGKVTRLQTSLGQPGSPSWSADGKYVVIS 455 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 3/153 (1%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +RI ++ + P ++ +G L +D D++++ + RLT + + YS Sbjct: 69 RRITDYFNDARQPVWAPDGSHLLYFAYRDGGYDLWTIKPDGSDMRRLTQGAYDDREPVYS 128 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-E 369 PD I F SDR G ++ M K+IS + P WSP G +A+ G Sbjct: 129 PDGKTIAFSSDRSGNYDIWTMDVATGAMKQISSNPREDRM-PTWSPDGRRVAYAGAEGMM 187 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSG 401 A+ V QE LL + + AP++ P G Sbjct: 188 GGALYVTDLATGQESLLKKVEGKADAPSFGPGG 220 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 27/216 (12%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P + + PR SP+ ++A+ D +Y++ ++ P+ + ++ +S Sbjct: 303 PRKALGITHPRLSPDGSRIAFVALGD-----LYIVSSK-GGTPENLTKDAALDADADWSP 356 Query: 268 NGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREG 324 +G+R + S + + ++ DL++ +LTN + A++SPD QI F R G Sbjct: 357 DGRRIVFSSDRVGGLPQLFIKDLKTGKDRQLTNMDTQPLGAAWSPDGKQIAFIDVDGRWG 416 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIG-----VM 376 + V+ R+ Q P WS G + + K+S F G V+ Sbjct: 417 VAGVCVVDVASGKVTRL-QTSLGQPGSPSWSADGKYVVISLSYKYS-NSFREGTNQVYVI 474 Query: 377 KKDGS--------QERLLVEDSNLQAPTWSPSGRSL 404 DG+ QE + ++ + P WSP G + Sbjct: 475 PVDGTTKPFWQIPQENMSLDTRSGSGPAWSPDGTRM 510 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 27/250 (10%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ ++VAYA + +Y+ D + + AP F G A + V Sbjct: 169 PTWSPDGRRVAYAGAEGMMGGALYVTDLATGQE-SLLKKVEGKADAPSFGPGGALAYV-V 226 Query: 277 QKDEAMDIYSVDLQSNATERL--------TNTLFINISASY----SPDSSQIVFESDREG 324 Q ++ D Q + TE + T + +S P S + F + E Sbjct: 227 QDASGSHLFIDDKQVSGTENVFPFRVSWGTGGGYHYVSDGKVRQGGPRKSTVDFAATLEV 286 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 Y D + K P SP G IAF G+ + V K G+ E Sbjct: 287 VRPSYTRAKR--DWDSTAPRKALGITHPRLSPDGSRIAFVAL-GDLYI--VSSKGGTPEN 341 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT------PAYA 437 L + + WSP GR ++FS + G +L+ DL G++ L N A++ Sbjct: 342 LTKDAALDADADWSPDGRRIVFSSDRVGGL-PQLFIKDLKTGKDRQLTNMDTQPLGAAWS 400 Query: 438 SDPQWVGFMD 447 D + + F+D Sbjct: 401 PDGKQIAFID 410 >gi|167621951|ref|YP_001672245.1| amidohydrolase [Shewanella halifaxensis HAW-EB4] gi|167351973|gb|ABZ74586.1| amidohydrolase [Shewanella halifaxensis HAW-EB4] Length = 1064 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY + + + L + + YSPD I F SD +G Sbjct: 58 SPNGKHVVF----DLLGDIYQMPIDGGEAKPLAEGIAWQMQPVYSPDGKYIAFTSDEDGG 113 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMK 377 + +++MQ++GS+ + ++ + P WSP G L+A F+ GE + V Sbjct: 114 DNIWIMQADGSNPRPVTNETFRLLNSPAWSPDGQYLVARKHFTGSRSLGAGEVWMYHVAG 173 Query: 378 KDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSR 408 DG + ER E +L P +SP GR + FS+ Sbjct: 174 GDGVKLTER-PNEQKDLGEPAYSPDGRYIYFSQ 205 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 66/280 (23%), Positives = 120/280 (42%), Gaps = 55/280 (19%) Query: 208 PSRDQILFEPRFSPNQQKVAYAT---------YDDEDILRVYLMDTRIDRAPKRIGNFRS 258 P+ + L EP +SP+ + + ++ Y + + +Y +I R + G+ Sbjct: 183 PNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIY----KIKRYDTQTGDIEV 238 Query: 259 MI------LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTL---------- 301 +I + P S +GK+ L +++D +Y +DL+S TE+L L Sbjct: 239 LIQGTGGAIRPTPSPDGKK-LAYIKRDGFQSSLYLLDLKSGETEKLYGDLDRDMQETWAI 297 Query: 302 -FINISASYSPDSSQIVFES-------DREGK---EQLYVMQSNGSDQK--RISQDKEAS 348 + + S++ D+ +I+F + D E K + + ++S + Q R +QD + Sbjct: 298 HGVYPTMSWTADNEEILFWANGKINKLDVESKSVAQIPFTVKSERAVQPAVRFTQDLDKD 357 Query: 349 YFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPS 400 FD SP G +AF K + + DG RL DS+L+ P WS Sbjct: 358 VFDVKMLRMAQVSPDGKKVAFEALG--KIWVKSLP-DGKMSRLTKLDSDLRELFPQWSRD 414 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G+ ++F+ D + G+ + N R + L N P +P Sbjct: 415 GKRIVFTTWDDQEQGTVSLATVRNKRVKALTNEPGKYVEP 454 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 25/211 (11%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVY---LMDTRIDRAPKRIGNFRSMILAPRFSSN 268 ++L + SP+ +KVA+ E + +++ L D ++ R K + R + P++S + Sbjct: 362 KMLRMAQVSPDGKKVAF-----EALGKIWVKSLPDGKMSRLTKLDSDLRELF--PQWSRD 414 Query: 269 GKRALISVQKDEAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--- 324 GKR + + D+ S+ +++ + LTN + ++SPD +V+ + G Sbjct: 415 GKRIVFTTWDDQEQGTVSLATVRNKRVKALTNEPGKYVEPTFSPDGETVVYRKAKGGYIT 474 Query: 325 ------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 + LY + +G +I+ A+ + P + D + F + SGE + + Sbjct: 475 PRTWSQETGLYQVDIDGDKNTKIT----AAGYQPQFGADNDRVYFME-SGETPQLASIGL 529 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +G ++R+ + SP G+ L F+ + Sbjct: 530 NGFEKRVHYTSKHATEFRVSPDGKQLAFAER 560 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 22/157 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD ++ FE+ GK ++V R+++ D + P WS G I FT Sbjct: 367 AQVSPDGKKVAFEA--LGK--IWVKSLPDGKMSRLTKLDSDLRELFPQWSRDGKRIVFTT 422 Query: 366 FSGEKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG---------DT 414 + ++ + ++ + L E PT+SP G ++++ + K G +T Sbjct: 423 WDDQEQGTVSLATVRNKRVKALTNEPGKYVEPTFSPDGETVVYRKAKGGYITPRTWSQET 482 Query: 415 GSKLYSIDLNGRNETLINT----PAYASDPQWVGFMD 447 G LY +D++G T I P + +D V FM+ Sbjct: 483 G--LYQVDIDGDKNTKITAAGYQPQFGADNDRVYFME 517 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 28/156 (17%) Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK----EASYFDPVWSP 356 L+ I+ S+S + + E D++ Q N + + Q K E ++ + SP Sbjct: 9 LYAAIALSFS---TPTIAEEDKQ------AWQVNAPAKAPLEQIKIDVSEGTWMNVSVSP 59 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTG 415 G + F I M DG + + L E Q P +SP G+ + F+ +DG G Sbjct: 60 NGKHVVFDLLGD----IYQMPIDGGEAKPLAEGIAWQMQPVYSPDGKYIAFTSDEDG--G 113 Query: 416 SKLYSIDLNG------RNET--LINTPAYASDPQWV 443 ++ + +G NET L+N+PA++ D Q++ Sbjct: 114 DNIWIMQADGSNPRPVTNETFRLLNSPAWSPDGQYL 149 >gi|119504089|ref|ZP_01626170.1| hypothetical protein MGP2080_10073 [marine gamma proteobacterium HTCC2080] gi|119460092|gb|EAW41186.1| hypothetical protein MGP2080_10073 [marine gamma proteobacterium HTCC2080] Length = 1101 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 28/199 (14%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G R + D D+YSV L + LT + N ++SPD +I F SDR+G Sbjct: 54 SPDGTRVIF----DMLGDLYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRDGN 109 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIG---VMKKDG 380 + ++VM +GS+ +++ +++ + +P WSP IA K SG G + +G Sbjct: 110 DNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVNG 169 Query: 381 SQERLLVEDSN-------LQAPTWSPSGRSLIFSR--------KKDGDTGSKLYSI---D 422 +V++++ + P +SP G L +S+ + + D+ ++++I D Sbjct: 170 GSGIEVVDNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRLD 229 Query: 423 L-NGRNETLINTPAYASDP 440 L G +T+ P A P Sbjct: 230 LTTGEIDTITGGPGGAVRP 248 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 19/180 (10%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT RD + P S + Q+V Y +++D+D+ RV ++ + + K + + P+F Sbjct: 400 LTEQRDHFEYWPALSADGQQVVYTSWNDQDLGRVKVVSAKGGPS-KTLVKTPGHYVQPKF 458 Query: 266 SSNGKRA---------LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 S +G+ L+S IY V + ++++ ++S D S++ Sbjct: 459 SPDGEMVVYRKTTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSA---GHHPTFSADGSRV 515 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 +F + E +L+ + G D++ I+Q ++ + + SP G+ +AFT E F + VM Sbjct: 516 LFTTRGEKGLELHSVDHMGLDKRVIAQGEKVTSY--AVSPDGNWLAFT----EHFRVYVM 569 >gi|62548395|gb|AAX86840.1| TolB [Aggregatibacter actinomycetemcomitans] Length = 183 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 36/174 (20%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G R + KD ++IY +L S +LT+ N S+SPD IVF SD Sbjct: 6 APAFSPDGSRLAFASSKDGVLNIYVTNLGSGQVSQLTSGAGNNTEPSWSPDGQSIVFTSD 65 Query: 322 REGKEQLYVMQSNGS--------DQKRISQDKE-------------------------AS 348 R G Q+Y M ++G +IS D ++ Sbjct: 66 RGGSPQVYRMSASGGGASLIGGRGSGQISSDGNLLVMVDVNNNIVKKDLTSGSSEVLSST 125 Query: 349 YFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + D P SP G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 126 FLDESPSISPNGIMVIYSSTQGLGKVLQLVSTDGRFKARLPGNDGQVKFPAWSP 179 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N + ++SPD S++ F S ++G +YV GS Q + +P WSP G I F Sbjct: 4 NGAPAFSPDGSRLAFASSKDGVLNIYVTNL-GSGQVSQLTSGAGNNTEPSWSPDGQSIVF 62 Query: 364 TKFSGEKFAIGVMKKDGSQERLL 386 T G + M G L+ Sbjct: 63 TSDRGGSPQVYRMSASGGGASLI 85 >gi|256421833|ref|YP_003122486.1| hypothetical protein Cpin_2806 [Chitinophaga pinensis DSM 2588] gi|256036741|gb|ACU60285.1| WD40 domain protein beta Propeller [Chitinophaga pinensis DSM 2588] Length = 509 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK + + Q++ DIY V + RLT ++ Y+PD I F S R G Sbjct: 339 WSPDGKYLVFTGQRNNDFDIYRVPAKGGEEVRLTTAPGLDDGPEYTPDGKYIYFNSVRSG 398 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----------FAI 373 Q++ M +GS+Q +I+ D ++F P SP G I F F E+ + Sbjct: 399 MMQIWRMAPDGSNQTQITNDDFHNWF-PHISPDGKWIVFLSFLKEEVDASDHPFYKHVYL 457 Query: 374 GVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIF 406 +M G +++ + P+WSP R + F Sbjct: 458 RLMPATGGPAKVIAYLYGGQGTINTPSWSPDSRRIAF 494 Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 11/77 (14%) Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDGDTGS 416 DL A+ ++ G + + +Q ++V + ++QAP W+ G+SLI++++ Sbjct: 215 DLKAYKQYIGSQLE---LMDIATQHSIIVYQTPGSIQAPNWNQDGQSLIYNKE------G 265 Query: 417 KLYSIDLNGRNETLINT 433 KLY DL R + INT Sbjct: 266 KLYQFDLRTRTPSPINT 282 >gi|18645084|gb|AAL76385.1| conserved hypothetical protein [uncultured marine proteobacterium] Length = 1101 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 28/199 (14%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G R + D D+YSV L + LT + N ++SPD +I F SDR+G Sbjct: 54 SPDGTRVIF----DMLGDLYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRDGN 109 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIG---VMKKDG 380 + ++VM +GS+ +++ +++ + +P WSP IA K SG G + +G Sbjct: 110 DNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVNG 169 Query: 381 SQERLLVEDSN-------LQAPTWSPSGRSLIFSR--------KKDGDTGSKLYSI---D 422 +V +++ + P +SP G L +S+ + + D+ ++++I D Sbjct: 170 GSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRLD 229 Query: 423 L-NGRNETLINTPAYASDP 440 L G +T+ P A P Sbjct: 230 LTTGEIDTITGGPGGAVRP 248 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 21/181 (11%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPR 264 LT RD + P S + Q+V Y +++D+D+ RV ++ + P R + + P+ Sbjct: 400 LTEQRDHFEYWPALSADGQQVVYTSWNDQDLGRVKVVTAK--GGPSRTLVKTPGHYVQPK 457 Query: 265 FSSNGKRA---------LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FS +G+ L+S IY V + ++++ ++S D S+ Sbjct: 458 FSPDGEMVVYRKTTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSA---GHHPTFSADGSR 514 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 ++F + E +L+ + G D++ I+Q ++ + + SP G+ +AFT E F + V Sbjct: 515 VLFTTRGEKGLELHSVDHMGLDKRVIAQGEKVTSY--AVSPDGNWLAFT----EHFRVYV 568 Query: 376 M 376 M Sbjct: 569 M 569 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 26/194 (13%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQI-VFES 320 P FS +GKR +D +I+ +D+ + ++T+ N+ + ++SPDS I V + Sbjct: 91 PTFSPDGKRIAFVSDRDGNDNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKG 150 Query: 321 DREGKE----QLYVMQSNGSDQKRISQDKEA-----SYFDPVWSPQGDLIAFTK------ 365 G+ ++++ NG + + + S +P +SP GD + +++ Sbjct: 151 TVSGRSIPSGEIWMYHVNGGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGW 210 Query: 366 -------FSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +GE FAI + G + + PT SP G L F ++ D S Sbjct: 211 VWQYNKDSTGEIFAIRRLDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFVKRLP-DFNSA 269 Query: 418 LYSIDLNGRNETLI 431 + DL ET++ Sbjct: 270 IVIRDLTSGMETIV 283 >gi|163756342|ref|ZP_02163456.1| WD40-like repeat/amidohydrolase domain protein [Kordia algicida OT-1] gi|161323694|gb|EDP95029.1| WD40-like repeat/amidohydrolase domain protein [Kordia algicida OT-1] Length = 1094 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 25/197 (12%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY++ + + L + I +SPD S+I+F SD G Sbjct: 58 SPNGKTIVF----DMLGDIYTIPVSGGTAKALRTGIPFEIQPHFSPDGSKILFTSDAGGG 113 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMK 377 + ++VM +NGSD K+I+++ + W P G+ IA F+ GE + + Sbjct: 114 DNIWVMNANGSDAKQITKESFRLLNNSTWMPDGNAFIARKHFTSTRSLGAGEMWQYHITG 173 Query: 378 KDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR--------KKDGDTGSKLYSID----LN 424 G Q + ++ P+ SP GR L +S + + D ++Y I Sbjct: 174 GSGLQITKRKNAQQDVNEPSVSPDGRYLYYSEDVYPGGSFQYNKDPNKQIYVIKRYDFQT 233 Query: 425 GRNETLINTPAYASDPQ 441 G+ + P AS PQ Sbjct: 234 GKTTQITGGPGGASRPQ 250 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 21/180 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRIS 342 ++ +L + +RLT S+SPD +IV+ + + + + NG + ++S Sbjct: 384 LWKKNLPNGTPKRLTQGTDFESEPSFSPDGKEIVYVTWNDLNLGTIRKISINGGNSMQLS 443 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQERLLVEDSNLQ 393 +K S+ P +S G I + K G + I MK DGS + + + Sbjct: 444 TEK-GSFRTPSFSLDGTHIVYRKERGNSDQGFTFAKNAGIYTMKADGSNSKFVTAQG--E 500 Query: 394 APTWSPSGRSLIFSRKKD--GDTGSKLYSIDLNGRNETLINTPAYAS------DPQWVGF 445 P +S G+ + G L+S++L G ++ T YA+ D +W+ F Sbjct: 501 YPIFSADGKRIFIQTGGTYFGSLTKALHSVNLQGNDKRTHFTSKYANRIVPSPDNKWIAF 560 >gi|62185544|ref|YP_220329.1| translocation protein TolB [Chlamydophila abortus S26/3] gi|81312309|sp|Q5L4R3|TOLB_CHLAB RecName: Full=Protein tolB; Flags: Precursor gi|62148611|emb|CAH64383.1| putative TolB protein [Chlamydophila abortus S26/3] Length = 427 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 20/310 (6%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R+ H +D I+ ++T G + +I+F S + + L +D DG N+R LT Sbjct: 122 RQKIHEAADKIHYALTSVPGISSGKIIFSLSKNSQDCELKQGELWSVDYDGGNLRPLT-Q 180 Query: 210 RDQILFEPRFSP--NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + + P + +++ Y +Y I +++L + K+I + + P FS Sbjct: 181 ENSLSITPSWMHIGSKKPYLYVSYK-FGIPKIFLGSLE-NTTGKKILHLQGNQFMPAFSP 238 Query: 268 NGKR-ALIS-VQKDEAMDIYSVDLQSNATER----LTNTLFINISASYSPDSSQIVFESD 321 K A IS + + + S L A + L T + S+SPD S++VF S+ Sbjct: 239 RKKLLAFISDAYGNPDLFLQSFSLSQGAMGKPRRILNETFGTQGNPSFSPDGSKLVFVSN 298 Query: 322 REGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KD 379 ++G+ +LY++Q + R+ K + P WSP G IAF I V Sbjct: 299 KDGRPRLYILQIDPEMLSPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICVYDLAT 358 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDL-NGRNETLINTPAYA 437 G +L + + P+W+ + L++S G+TG S+LY + L + + ++ Sbjct: 359 GKDYQLTTTPVDKEGPSWAVDSQHLVYSA---GNTGESELYLLSLITQKTKKIVIGLGEK 415 Query: 438 SDPQWVGFMD 447 P W GF D Sbjct: 416 RFPSWGGFPD 425 >gi|301511542|ref|ZP_07236779.1| translocation protein TolB [Acinetobacter baumannii AB058] Length = 167 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 10/116 (8%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ--DWNSLGAQVLVTGRVIKEGKDRLR 125 +V DL RS F S + + +I + Q DW + G +VTG+ IK+ D Sbjct: 57 IVETDLNRSGRFT-----SSSKNLPANAAINQIQASDWQAAGIPYVVTGQ-IKQTADGFE 110 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFV 180 V ++L+DV+ ++Q + + + PAS R+ H +SD IYQ++TG GDF+ RI +V Sbjct: 111 VHYQLYDVQ-KQQYLLNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYV 165 >gi|157959840|ref|YP_001499874.1| amidohydrolase [Shewanella pealeana ATCC 700345] gi|157844840|gb|ABV85339.1| amidohydrolase [Shewanella pealeana ATCC 700345] Length = 1066 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY + + + L + + YSPD I F SD +G Sbjct: 57 SPNGKHVVF----DLLGDIYQMPIAGGEAKPLAKGIAWQMQPVYSPDGKYIAFTSDEDGG 112 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMK 377 + ++VMQ++GS+ + ++++ P WSP G L+A F+ GE + V Sbjct: 113 DNIWVMQADGSNPRPVTKETFRLLNSPAWSPDGQYLVARKHFTGSRSLGAGEVWMYHVAG 172 Query: 378 KDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSR 408 DG + ER E +L P +SP G + FS+ Sbjct: 173 GDGVKLTER-PNEQKDLGEPAYSPDGHYIYFSQ 204 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 63/280 (22%), Positives = 119/280 (42%), Gaps = 55/280 (19%) Query: 208 PSRDQILFEPRFSPNQQKVAYAT---------YDDEDILRVYLMDTRIDRAPKRIGNFRS 258 P+ + L EP +SP+ + ++ Y + + +Y +I R + G+ Sbjct: 182 PNEQKDLGEPAYSPDGHYIYFSQDSTPGKTFHYSKDSVKGIY----KIKRYDTQTGDIEV 237 Query: 259 MI------LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTL---------- 301 +I + P S +G + L +++D +Y +DL+S TE+L L Sbjct: 238 LIQGTGGAIRPTPSPDGNK-LAYIKRDGFQSSLYLLDLKSGETEKLYGELDRDMQETWAI 296 Query: 302 -FINISASYSPDSSQIVFES-------DREGK---EQLYVMQSNGSDQK--RISQDKEAS 348 + + S++ D+++I+F + D E K + + +++ + Q R +QD + Sbjct: 297 HGVYPTMSWTTDNNEILFWANGKINKLDVESKSVAQIPFTIKTERAIQPAVRFTQDLDKD 356 Query: 349 YFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPS 400 FD SP G +AF K + + DG RL DS+L+ P WS Sbjct: 357 VFDVKMLRMAQVSPDGKKVAFEALG--KIWVKSL-PDGKMSRLTKLDSDLRELFPQWSRD 413 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G+ ++F+ D + G+ + N R + L + P +P Sbjct: 414 GKKVVFTTWDDQEQGTVSLANVRNKRVKVLTDEPGKYVEP 453 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 22/157 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD ++ FE+ GK ++V R+++ D + P WS G + FT Sbjct: 366 AQVSPDGKKVAFEA--LGK--IWVKSLPDGKMSRLTKLDSDLRELFPQWSRDGKKVVFTT 421 Query: 366 FSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG---------DT 414 + E+ + + + ++L E PT+SP G ++++ + K G +T Sbjct: 422 WDDQEQGTVSLANVRNKRVKVLTDEPGKYVEPTFSPDGETVVYRKAKGGYITPRTWSQET 481 Query: 415 GSKLYSIDLNGRNETLINT----PAYASDPQWVGFMD 447 G LY +D++G T I + P + +D V FM+ Sbjct: 482 G--LYQVDIDGDKNTKITSAGYQPQFGADNDRVYFME 516 >gi|145638708|ref|ZP_01794317.1| translocation protein TolB precursor [Haemophilus influenzae PittII] gi|145272303|gb|EDK12211.1| translocation protein TolB precursor [Haemophilus influenzae PittII] Length = 143 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 215 FEPRFSPNQQKVAYATYDDED---ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P +SP+ Q++AY +++++ +++ TR K + +F+ AP FS +G R Sbjct: 1 MSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGTR-----KVVASFQGHNGAPAFSPDGSR 55 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + +D ++IY + +LT+ N ++SPD + I+F SDR G Q+Y M Sbjct: 56 LAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRM 115 Query: 332 QSNG 335 ++G Sbjct: 116 DASG 119 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Query: 261 LAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 ++P +S +G+R A +S + ++ + DL S + + + N + ++SPD S++ F Sbjct: 1 MSPAWSPDGQRLAYVSFENKKSQLVVQ-DLNSGTRKVVASFQGHNGAPAFSPDGSRLAFA 59 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S R+G +YVM +NG +++ + +P WSP G+ I FT Sbjct: 60 SSRDGVLNIYVMGANGGTPTQLTS-GAGNNTEPAWSPDGNSILFT 103 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 4/129 (3%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +S ++SPD ++ + S K QL V N S +++ + P +SP G +AF Sbjct: 1 MSPAWSPDGQRLAYVSFENKKSQLVVQDLN-SGTRKVVASFQGHNGAPAFSPDGSRLAFA 59 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I VM +G L + N P WSP G S++F+ + G ++Y +D Sbjct: 60 SSRDGVLNIYVMGANGGTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGSP--QVYRMDA 117 Query: 424 NGRNETLIN 432 +G + T++ Sbjct: 118 SGGSATVVG 126 >gi|329848102|ref|ZP_08263130.1| WD40-like Beta Propeller Repeat family protein [Asticcacaulis biprosthecum C19] gi|328843165|gb|EGF92734.1| WD40-like Beta Propeller Repeat family protein [Asticcacaulis biprosthecum C19] Length = 501 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 31/229 (13%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G ++ T + +++ + FSP+ +++ + + D +RI P G R Sbjct: 275 GTPVKLETGALNKMNNDHGFSPDGKEIVVSDQTEPD------NQSRIHILPAAGGTPR-- 326 Query: 260 ILAPR-------FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 ++ P +S +GK Q+ D+YS+ + RLT T ++ A YS D Sbjct: 327 LVTPNGPSYWHGWSPDGKTLAYIAQRGGDYDVYSIPVGGGPETRLTTTPGLDDGAEYSAD 386 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 I F S R G +L+ M+S+GS ++++ ++ + P SP G IAF F G A Sbjct: 387 GQWIYFNSVRSGNMKLWRMKSDGSGAEQLTFGDDSRDWFPHPSPDGKWIAFIAF-GTDVA 445 Query: 373 IG-----------VMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIF 406 +G +M G + +L + P+WSP + + F Sbjct: 446 VGDHPANKDVELRLMPAAGGEAVVLAWLFGGQGTINVPSWSPDSKKIAF 494 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%) Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LI 431 I ++ G RL+ + WSP G++L + ++ GD +YSI + G ET L Sbjct: 315 IHILPAAGGTPRLVTPNGPSYWHGWSPDGKTLAYIAQRGGDY--DVYSIPVGGGPETRLT 372 Query: 432 NTPA------YASDPQWVGF 445 TP Y++D QW+ F Sbjct: 373 TTPGLDDGAEYSADGQWIYF 392 >gi|254483262|ref|ZP_05096494.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium HTCC2148] gi|214036485|gb|EEB77160.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium HTCC2148] Length = 342 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 21/212 (9%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP--KRIGNFRSMILAPRFSSNGKRA 272 P F+PN + + +++ D L R D A +I + S P +S+G+ Sbjct: 127 LTPAFTPNGRFLIFSS--DRSGESQSLWRKRSDGAGGITQITSSNSFDWQPAIASDGETI 184 Query: 273 LISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQL 328 + + ++A I+S+++ +LT S S SPD +IVF GK+Q+ Sbjct: 185 IFQSHRKNNQAASIWSINMNGGLLTQLTE----GRSPSISPDGRRIVFVRPDASTGKDQV 240 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----FSGEKFA---IGVMKKDGS 381 + MQ +GS ++S A+ DP W P G I F G+ FA I +M+ DG+ Sbjct: 241 WSMQVDGSGLTQLSS-GNANDVDPSWHPNGRYIVFASDAMVVQGDVFADYNIWIMRADGT 299 Query: 382 QERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 Q L E+ S+ AP + GR+++F + G Sbjct: 300 QREQLTENFSHDDAPVFDRRGRTIVFRSNRGG 331 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 32/235 (13%) Query: 231 YDDEDILRVYL-------MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM- 282 YDD++ + V+ +DT R+ N + + S+ R +S +D + Sbjct: 40 YDDDEFVAVFTPKSTTAALDTTDG---PRVTNLKQLTNNTERSNQYNRPALSPNQDAMVY 96 Query: 283 --------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-LYVMQS 333 IY L S A +++ +N++ +++P+ ++F SDR G+ Q L+ +S Sbjct: 97 VEFAGGKSSIYRQSLGSPAKSPISSDAGMNLTPAFTPNGRFLIFSSDRSGESQSLWRKRS 156 Query: 334 NGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVED 389 +G+ I+Q ++ FD P + G+ I F + + +I + +G LL + Sbjct: 157 DGAGG--ITQITSSNSFDWQPAIASDGETIIFQSHRKNNQAASIWSINMNGG---LLTQL 211 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTP-AYASDPQW 442 + ++P+ SP GR ++F R D TG +++S+ ++G T +++ A DP W Sbjct: 212 TEGRSPSISPDGRRIVFVR-PDASTGKDQVWSMQVDGSGLTQLSSGNANDVDPSW 265 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 20/217 (9%) Query: 202 NIRYLT--PSRDQILFEPRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFR 257 N++ LT R P SPNQ + Y + I R L A I + Sbjct: 68 NLKQLTNNTERSNQYNRPALSPNQDAMVYVEFAGGKSSIYRQSLGSP----AKSPISSDA 123 Query: 258 SMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQ 315 M L P F+ NG+ + S + E+ ++ + ++T++ + + + D Sbjct: 124 GMNLTPAFTPNGRFLIFSSDRSGESQSLWRKRSDGAGGITQITSSNSFDWQPAIASDGET 183 Query: 316 IVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKF 371 I+F+S R+ + ++ + NG ++++ + P SP G I F + S K Sbjct: 184 IIFQSHRKNNQAASIWSINMNGGLLTQLTEGRS-----PSISPDGRRIVFVRPDASTGKD 238 Query: 372 AIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 + M+ DGS +L ++N P+W P+GR ++F+ Sbjct: 239 QVWSMQVDGSGLTQLSSGNANDVDPSWHPNGRYIVFA 275 >gi|167946736|ref|ZP_02533810.1| TolB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 163 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +++ K DIY D + ++T I+ ++SPD IVF SDR GK Q+Y S Sbjct: 1 MTLSKGGNPDIYVFDFTTRKLRQITRHYAIDTEPAWSPDGRSIVFTSDRGGKPQIYKTPS 60 Query: 334 NGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 G +R+ S + ASY +P G +A ++ I ++ D ++L Sbjct: 61 YGGKAERVTFQNSYNARASY-----APDGKSLAMVTRENGQYRIATLQLDSGVMQVLSRG 115 Query: 390 SNLQAPTWSPSGRSLIFSRKK 410 S ++P+++P+G +I++ KK Sbjct: 116 SLDESPSFAPNGSMIIYASKK 136 >gi|85710151|ref|ZP_01041216.1| hypothetical protein NAP1_14738 [Erythrobacter sp. NAP1] gi|85688861|gb|EAQ28865.1| hypothetical protein NAP1_14738 [Erythrobacter sp. NAP1] Length = 1096 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + R+ + L + +SPD ++I F SDR G + ++VM +GSD+++++ Sbjct: 71 DIYTMPIAGGTPRRIADGLAWEVQPRFSPDGTKIAFTSDRGGGDNIWVMNVDGSDKRQVT 130 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEKFA----IGVMKKDGSQERLLVEDSN------ 391 ++ P WSP G +IA F+ + A I + G +VE ++ Sbjct: 131 KESFRLLNQPYWSPDGRFIIAKKHFTTSRSAGTGEIWMYHVSGGGGVAIVERADEALQKE 190 Query: 392 LQAPTWSPSGRSLIFSRK 409 L P +SP G ++ ++R Sbjct: 191 LGEPVFSPDGEAIYYTRN 208 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 38/239 (15%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +A+ D +Y M P+RI + + + PRFS +G + + + Sbjct: 58 SPDGSTIAFNLLGD-----IYTMPI-AGGTPRRIADGLAWEVQPRFSPDGTKIAFTSDRG 111 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ +++ + ++T F ++ Y SPD I+ F + R G ++++ Sbjct: 112 GGDNIWVMNVDGSDKRQVTKESFRLLNQPYWSPDGRFIIAKKHFTTSRSAGTGEIWMYHV 171 Query: 334 NGSDQ----KRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLV 387 +G +R + + +PV+SP G+ I +T+ + G +F + +D + Sbjct: 172 SGGGGVAIVERADEALQKELGEPVFSPDGEAIYYTRNTTPGNQF---IYAQDSQTGIFAI 228 Query: 388 EDSNLQA---------------PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 E +L+ PT SP G + F R +D DT S+L+ DL E +I Sbjct: 229 ERHDLETGEVTTAVDGYGGAVRPTPSPDGTEMAFVR-RDKDT-SQLWVKDLATGAERMI 285 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 41/158 (25%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-- 367 SPD +Q+VFES +LY + G D R + +G + F FS Sbjct: 372 SPDGTQVVFES----LGRLYTKSARGRDAPRPLTG----------AAEGTIEGFLAFSRD 417 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAP-------------TWSPSGRSLIFSRKKDGDT 414 G + A V D R++ D+N Q P TWSP GR + + ++ G Sbjct: 418 GSRIAY-VEWTDEDLGRIITADANGQNPRAITSEPGHYGDLTWSPDGRHIAYEKRGGGFL 476 Query: 415 GSKLYS-------IDLNGRNETLI----NTPAYASDPQ 441 S YS I NG + + P + SDP+ Sbjct: 477 TSPAYSETTGIYMIPSNGGEPMRVSRSGSNPQFGSDPE 514 >gi|320161703|ref|YP_004174928.1| hypothetical protein ANT_23020 [Anaerolinea thermophila UNI-1] gi|319995557|dbj|BAJ64328.1| hypothetical protein ANT_23020 [Anaerolinea thermophila UNI-1] Length = 645 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 L+ ++ E + +++ + RLT T + + S SPD +++ F S + G L+++ Sbjct: 102 LLFMRDGERIHLFAYHPKFLPLTRLTRTAWDEMHPSLSPDGNRLAFTSHQNGYWDLFILD 161 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERL-LVEDS 390 + ++I+Q E P WSP G +A+ + E+ I + D SQ + L +D Sbjct: 162 LTTGETQQITQSPEYE-GAPTWSPDGQWLAYEAYRNEQLDIYLQSLNDLSQPPIQLTDDP 220 Query: 391 NLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + P WSP GR++ F + GD ++++ +L+ E +N Sbjct: 221 AADSDPAWSPGGRTIAFVSTRTGD--AEIWLANLDKPEERFVN 261 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + P S +G R + ++ D++ +DL + T+++T + + ++SPD + +E+ Sbjct: 134 MHPSLSPDGNRLAFTSHQNGYWDLFILDLTTGETQQITQSPEYEGAPTWSPDGQWLAYEA 193 Query: 321 DREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 R + +Y+ N Q I D A+ DP WSP G IAF I + D Sbjct: 194 YRNEQLDIYLQSLNDLSQPPIQLTDDPAADSDPAWSPGGRTIAFVSTRTGDAEIWLANLD 253 Query: 380 GSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGD 413 +ER + + ++ P WS GR L ++ +K+ + Sbjct: 254 KPEERFVNISRDPRSADLNPVWSNDGRYLAYATRKESE 291 >gi|116625575|ref|YP_827731.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116228737|gb|ABJ87446.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 652 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 38/220 (17%) Query: 260 ILAPRFSSNGKRALISVQK---DEAMDIYSVDLQSNAT-ER--LTNTLFINISASYSPDS 313 + + S +G+ +VQ+ DE I + + AT ER LT+ + +SPDS Sbjct: 33 VAGAQISPDGRYVAYTVQQANWDENDFISQIWIAVTATGERYQLTSGKKSSTGPQWSPDS 92 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--------- 364 ++ F SDR+GK Q+Y++ NG + ++ + E WSP G IAFT Sbjct: 93 HRLAFTSDRDGKRQIYLISPNGGEAIALTSE-ENGVSAIAWSPDGASIAFTSSGPDAKPR 151 Query: 365 KFSGEKFA-IGVMKKDGSQERLL---VEDSNLQAP-------------TWSPSGRSLIFS 407 K EK+ +++ D + L V D+ +A +WSP G+ + F+ Sbjct: 152 KDRKEKYGEFEIIEHDYTMSHLWLIKVADNKPKATALTSGDKFSVGAFSWSPDGKRIAFA 211 Query: 408 RKKDGDTGSK----LYSIDLNGRN-ETLINTPAYASDPQW 442 +D D GS+ +Y +DL + + L+++P S+P+W Sbjct: 212 AGRDPDLGSQDTESIYVLDLADLHVKKLLDSPGPHSNPKW 251 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 25/165 (15%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDR------EGKEQLYVMQSNGSDQKR 340 D + AT + F + S+SPD +I F + R + E +YV+ K+ Sbjct: 179 ADNKPKATALTSGDKFSVGAFSWSPDGKRIAFAAGRDPDLGSQDTESIYVLDLADLHVKK 238 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTK-------FSGEKFAIGVMKKDGSQERLLV----ED 389 + D + +P WSP G IAFT F ++ I V+ DG Q RLL ED Sbjct: 239 L-LDSPGPHSNPKWSPNGREIAFTTSNSVPNFFYANRY-IAVIPADGGQPRLLTKDFDED 296 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 NL W+ G S+K T + + ID R I P Sbjct: 297 PNLL--EWADDGIYFGASQK----TAAHTFRIDPATRAIRRITGP 335 >gi|119469520|ref|ZP_01612424.1| hypothetical protein ATW7_06673 [Alteromonadales bacterium TW-7] gi|119447055|gb|EAW28325.1| hypothetical protein ATW7_06673 [Alteromonadales bacterium TW-7] Length = 1061 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + +LT+ + + +SPD I F SD+ G + ++VM NG +Q ++ Sbjct: 73 DIYTMPMSGGTATQLTSDIAWQMQPRFSPDGKHIAFTSDQGGGDNIWVMDLNGENQSAVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSN----LQ 393 + P WSP GD L+A F+ + + + K G + L + N L Sbjct: 133 NETFRLLNSPAWSPDGDFLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLG 192 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS Sbjct: 193 EPMFSPDGRYVYFSH 207 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 24/193 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PRFS +GK + + +I+ +DL +TN F + S ++SPD +V Sbjct: 95 MQPRFSPDGKHIAFTSDQGGGDNIWVMDLNGENQSAVTNETFRLLNSPAWSPDGDFLVAR 154 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS--GEK 370 F + R G ++++ G +++ ++ + +P++SP G + F+ + G+ Sbjct: 155 KHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKT 214 Query: 371 F------AIGVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K + G E ++ PT SP G++L + ++ D T L Sbjct: 215 FHYSKDSVAGIYKIKRYDRETGEIETIIDGMGGAIRPTPSPDGKTLAYIKRDDFQT--SL 272 Query: 419 YSIDLNGRNETLI 431 Y DL+ T + Sbjct: 273 YLYDLSTGEHTQV 285 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 9/113 (7%) Query: 259 MILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLT-NTLFINISASYSPDSSQI 316 M+ + S +G+ A+ EA+ IY DL+S +RLT T + YS D +I Sbjct: 365 MLRNVQVSPDGETAIF-----EALGYIYKRDLESGKIKRLTKQTDHFELFPQYSRDGKKI 419 Query: 317 VFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 V+ + + K+ Q+ V+ S I+Q+ Y +P +SP G + + K SG Sbjct: 420 VYTTWSDNKQGQVRVVSSRSGRGDTITQEP-GKYVEPTFSPNGKTVVYRKASG 471 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 34/248 (13%) Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D + I+ LT D P++S + +K+ Y T+ D +V ++ +R R I Sbjct: 390 DLESGKIKRLTKQTDHFELFPQYSRDGKKIVYTTWSDNKQGQVRVVSSRSGRG-DTITQE 448 Query: 257 RSMILAPRFSSNGKRALISVQKDEAM---------DIYSVDLQSNATERLTNTLFINISA 307 + P FS NGK + ++ IYSV + +E ++ + + Sbjct: 449 PGKYVEPTFSPNGKTVVYRKASGGSILNPKWSLNPGIYSVSAKGGKSELISKSGY---QP 505 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 + D+ + VF K L V++ ++ + + A+ F SP G+ +AF + Sbjct: 506 QFGADNDR-VFVMSPWPKPSLSVVELESKKVSKLYESEHATEFRV--SPDGEYLAFAERF 562 Query: 367 ---------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 SG+ IG E+L V ++ +WS L ++ G + Sbjct: 563 KVYVTPLVESGKAINIGPKDSKFPIEQLSVRAG--ESISWSADSSKLYWT------LGPE 614 Query: 418 LYSIDLNG 425 LY LNG Sbjct: 615 LYHASLNG 622 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGD 413 SP G I F I M G L D Q P +SP G+ + F+ + G Sbjct: 60 SPDGKTIVFDLLG----DIYTMPMSGGTATQLTSDIAWQMQPRFSPDGKHIAFTSDQGG- 114 Query: 414 TGSKLYSIDLNGRNET--------LINTPAYASD 439 G ++ +DLNG N++ L+N+PA++ D Sbjct: 115 -GDNIWVMDLNGENQSAVTNETFRLLNSPAWSPD 147 >gi|262199569|ref|YP_003270778.1| beta-propeller repeat-containing to-pal system protein TolB [Haliangium ochraceum DSM 14365] gi|262082916|gb|ACY18885.1| beta-propeller repeat-containing to-pal system protein TolB [Haliangium ochraceum DSM 14365] Length = 362 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 21/296 (7%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + +T ++GD + + I L + ++ + L+ R L PR Sbjct: 70 RQLTKDEGDEYPAAAIPGQDALLVIAARDLGDVHKEQLQLVRLSGERVGSLHAPRGRSRN 129 Query: 224 QKVA------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 VA A D E + M + + I + ++ P S +G + Sbjct: 130 PSVAPDGSWLVAESDAEGFSNLVRMTPAPEAEARSIQDAKAGSFEPSISPDGTQIAFVSS 189 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D ++Y D Q RLT+ + + +SPD I F S+RE + ++++++ +GS Sbjct: 190 RDGDPELYLSDAQGQDVRRLTHFHLEDWAPQWSPDGRYIAFLSNREKRARVFLIRPDGSG 249 Query: 338 QKRIS-QDKEASYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDS 390 + +S D W P+G + F K K IG D E + + D Sbjct: 250 TRAVSGMAATGDERDIAWHPEGGSLVFVGRMDDGKTRLWKVEIG---DDAVGEPVALTDG 306 Query: 391 NLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 + + P WSP G+ L+F +++G+T LY + +G +T L P P+W+ Sbjct: 307 SSRDDQPAWSPDGKYLVFVSEREGNT--DLYLMRADGSGQTRLTEAPGADWLPRWL 360 >gi|94987134|ref|YP_595067.1| periplasmic component of the Tol biopolymer transport system [Lawsonia intracellularis PHE/MN1-00] gi|94731383|emb|CAJ54746.1| Periplasmic component of the Tol biopolymer transport system [Lawsonia intracellularis PHE/MN1-00] Length = 452 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 80/351 (22%), Positives = 153/351 (43%), Gaps = 22/351 (6%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTI 158 F+ + G+ +L+T K VE RL++ K + G + S IA Sbjct: 106 FKRFQLAGSDLLITVGWPKGDHSDSSVELRLYETYSGKFVFGTAYSGVVKSEISNIADKF 165 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 D+ +++TG F S + FV + +G + ++ G +R +T + P Sbjct: 166 CADLMKTLTGSGDFFLSTLAFVKQG--NGKNVRDVWLVKPTGKELRQITDISGTAM-SPS 222 Query: 219 FSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFR---SMILAPRFSSNGKRALI 274 +S + + + + DD L V+ DR +I R + ++ P F + K A + Sbjct: 223 WSIDGRFIVFTHLDDRSHALGVW------DRLTNKIQRIRFPGNTVIGPVFMPDNKVA-V 275 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 S+ + DI+ +D + L + IN+S S+ +++ F S+R Q+++ + Sbjct: 276 SLSTGKYPDIFLLDHTFQKEKVLEESPAINVSPSFDAKGTKMAFCSNRLSNPQIFMKDFS 335 Query: 335 GSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNL 392 R+S ++ Y +P SP G LIAF++ + + I V G + ++ N Sbjct: 336 SGQVSRVS--RQGCYNTEPTMSPDGTLIAFSRLTDDGNRIFVQDLLTGIERQVTFGPGND 393 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 + P+++P + F+ + G ++Y I +G + I T AS P+W Sbjct: 394 EQPSFAPDSYFIAFTSTRSGK--KQIYLITRHGGDAKQIPTGHGDASFPRW 442 >gi|40063481|gb|AAR38281.1| amidohydrolase domain protein [uncultured marine bacterium 581] Length = 1101 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 28/199 (14%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G R + D D+YSV L + LT + N ++SPD +I F SDR+G Sbjct: 54 SPDGTRVIF----DMLGDLYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRDGN 109 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIG---VMKKDG 380 + ++VM +G++ +++ +++ + +P WSP IA K SG G + +G Sbjct: 110 DNIWVMDIDGTNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVNG 169 Query: 381 SQERLLVEDSN-------LQAPTWSPSGRSLIFSR--------KKDGDTGSKLYSI---D 422 +V +++ + P +SP G L +S+ + + D+ ++++I D Sbjct: 170 GSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRLD 229 Query: 423 L-NGRNETLINTPAYASDP 440 L G +T+ P A P Sbjct: 230 LTTGEIDTITGGPGGAVRP 248 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 21/181 (11%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRSMILAPR 264 LT RD + P S + Q+V Y +++D+++ RV ++ + P R + + P+ Sbjct: 400 LTEQRDHFEYWPALSADGQQVVYTSWNDQNLGRVKVVSAK--GGPSRTLVKTPGHYVQPK 457 Query: 265 FSSNGKRA---------LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FS +G+ L+S IY V + ++++ ++S D S+ Sbjct: 458 FSPDGEMVVYRKTTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSA---GHHPTFSADGSR 514 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 ++F + E +L+ + G D++ I+Q ++ + + SP G+ +AFT E F + V Sbjct: 515 VLFTTRGEKGLELHSVDHMGLDKRVIAQGEKVTSY--AVSPDGNWLAFT----EHFRVYV 568 Query: 376 M 376 M Sbjct: 569 M 569 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 26/194 (13%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQI-VFES 320 P FS +GKR +D +I+ +D+ ++T+ N+ + ++SPDS I V + Sbjct: 91 PTFSPDGKRIAFVSDRDGNDNIWVMDIDGTNVTQVTSERKHNLHNPAWSPDSQWIAVRKG 150 Query: 321 DREGKE----QLYVMQSNGSDQKRISQDKEA-----SYFDPVWSPQGDLIAFTK------ 365 G+ ++++ NG + + + S +P +SP GD + +++ Sbjct: 151 TVSGRSIPSGEIWMYHVNGGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGW 210 Query: 366 -------FSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +GE FAI + G + + PT SP G L F ++ D S Sbjct: 211 VWQYNKDSTGEIFAIRRLDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFVKRLP-DFNSA 269 Query: 418 LYSIDLNGRNETLI 431 + DL ET++ Sbjct: 270 IVIRDLTSGMETIV 283 >gi|218780129|ref|YP_002431447.1| hypothetical protein Dalk_2286 [Desulfatibacillum alkenivorans AK-01] gi|218761513|gb|ACL03979.1| WD40 domain protein beta Propeller [Desulfatibacillum alkenivorans AK-01] Length = 310 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 13/196 (6%) Query: 213 ILFEPRFSPNQQKVAYATYD--DEDILRVYLMDTRID--RAPKRIGNFRSMILAPRFSSN 268 I +P ++P ++A+ Y D ++ + D R P++I F M+ P +S + Sbjct: 115 IYAQPTWAPAGFELAFVEYTAVPADAAEIFSIKKEGDIFRLPEKITKFPPMMTFPSYSPD 174 Query: 269 GK-RALISVQKDEAM----DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 GK A S ++D + +I +DL++ + +LT+ + +SPD S++ + S+ E Sbjct: 175 GKLMACASFKRDPVLGVIEEIIVIDLKTGSQSQLTHDGADSFFPVWSPDGSKLAYTSNLE 234 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G ++ + ++ R++ + SY +P WSP G IAF I + G+ Sbjct: 235 GNFDIWAVSYPKGEKTRLT--RSPSYDGEPSWSPDGSRIAFISSRSGHREIWTIDAGGAD 292 Query: 383 ERLLVE-DSNLQAPTW 397 R + E S P W Sbjct: 293 SRQVTELKSTCSHPCW 308 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 21/240 (8%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDT---RIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P SP + +AY + + + +MD+ D +G + AP Sbjct: 78 PAVSPGGKHIAYVSGRKQ----IRIMDSLTGEADTVNLPLGIYAQPTWAPAGFELAFVEY 133 Query: 274 ISVQKDEAMDIYSVDLQSN---ATERLTNTLFINISASYSPDSSQIVFESDREGK----- 325 +V D A +I+S+ + + E++T + SYSPD + S + Sbjct: 134 TAVPAD-AAEIFSIKKEGDIFRLPEKITKFPPMMTFPSYSPDGKLMACASFKRDPVLGVI 192 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKDGSQER 384 E++ V+ Q +++ D S+F PVWSP G +A+T F I V G + R Sbjct: 193 EEIIVIDLKTGSQSQLTHDGADSFF-PVWSPDGSKLAYTSNLEGNFDIWAVSYPKGEKTR 251 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWV 443 L S P+WSP G + F + G ++++ID G + + + S P WV Sbjct: 252 LTRSPSYDGEPSWSPDGSRIAFISSRSGH--REIWTIDAGGADSRQVTELKSTCSHPCWV 309 >gi|268316197|ref|YP_003289916.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333731|gb|ACY47528.1| peptidase S9B dipeptidylpeptidase IV domain protein [Rhodothermus marinus DSM 4252] Length = 1028 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 17/168 (10%) Query: 261 LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT-ERLTNTL---------FINISASY 309 LAP S +G+ ++D +D++ D ++ RL+++ FIN S S+ Sbjct: 298 LAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASDPHFDAIRFINSSGSW 357 Query: 310 SPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD + F + +G ++ + G ++RI+ + + + WSP G IAF+ SG Sbjct: 358 SPDGQRFAFITFAQGNNEIAIWNLRKGKLERRIAVEGVGAIHNLAWSPDGRTIAFSGLSG 417 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIF--SRKKDG 412 + ++ + +Q R L +D ++LQ P WSP GR++ F R DG Sbjct: 418 GISDLYLLDLETNQVRKLTDDRYADLQ-PAWSPDGRTIAFVSDRGPDG 464 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 42/271 (15%) Query: 189 IKNSLCVMDRD-----GANIRYLTPSRD--QILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +KN+ + +D A + L P D +I P SP+ + VA+ + D + +++ Sbjct: 265 VKNTYLPLLKDRTPPEQAGRKVLAPDLDAGEINLAPALSPDGRYVAFLSERDLFTIDLFV 324 Query: 242 MDTRIDRAPKRIGNFRS--MILAPRF-------SSNGKR-ALIS-VQKDEAMDIYSVDLQ 290 D + +R+ + S A RF S +G+R A I+ Q + + I+ +L+ Sbjct: 325 ADAETGKVLRRLSSSASDPHFDAIRFINSSGSWSPDGQRFAFITFAQGNNEIAIW--NLR 382 Query: 291 SNATERLTNTLFINI--SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ER + + ++SPD I F G LY++ + ++++ D+ A Sbjct: 383 KGKLERRIAVEGVGAIHNLAWSPDGRTIAFSGLSGGISDLYLLDLETNQVRKLTDDRYAD 442 Query: 349 YFDPVWSPQGDLIAFT-------------KFSGEKFAIGVMKKDGSQERLLVEDSNLQA- 394 P WSP G IAF ++ E+ A+ + + + R+L N Q Sbjct: 443 -LQPAWSPDGRTIAFVSDRGPDGTDFEILRYGHERLAL--LDLETGKVRVLRPFRNGQQI 499 Query: 395 -PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P +SP GRSL F DG +Y +DLN Sbjct: 500 NPQFSPDGRSLYFISNHDGF--KDIYRMDLN 528 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 16/154 (10%) Query: 303 INISASYSPDSSQIVFESDRE-GKEQLYVMQS-NGSDQKRISQDKEASYFDPV------- 353 IN++ + SPD + F S+R+ L+V + G +R+S +FD + Sbjct: 296 INLAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASDPHFDAIRFINSSG 355 Query: 354 -WSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRK 409 WSP G AF F+ + AI ++K + R+ VE + WSP GR++ FS Sbjct: 356 SWSPDGQRFAFITFAQGNNEIAIWNLRKGKLERRIAVEGVGAIHNLAWSPDGRTIAFSGL 415 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQW 442 G S LY +DL + YA P W Sbjct: 416 SGGI--SDLYLLDLETNQVRKLTDDRYADLQPAW 447 >gi|42523526|ref|NP_968906.1| component of the Tol biopolymer transport system [Bdellovibrio bacteriovorus HD100] gi|39575732|emb|CAE79899.1| component of the Tol biopolymer transport system [Bdellovibrio bacteriovorus HD100] Length = 974 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 23/170 (13%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 D++ D++S DL +RLT + SYSPD I F S+R G + Sbjct: 158 DDSYDVFSSDLSGKNIQRLTREKGYDAEGSYSPDGQWIAFASNRAGYSEKLEGEDKKLFE 217 Query: 328 --------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMK 377 +Y+M+++G+ KR++ D + P +S G I + +FS G I M Sbjct: 218 QDPSYMMDIYIMKADGTQVKRLT-DSKGYDGGPFFSADGKKITWRRFSPNGSTAEIFTMN 276 Query: 378 KDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 DGS+++ + + ++ AP + PSG +IF G +L+ +D G+ Sbjct: 277 VDGSEQKQVTKLKSMSWAPYFHPSGDYIIFGSSVLGYHNFELFIVDAEGK 326 >gi|83814657|ref|YP_446340.1| MdsD protein, putative [Salinibacter ruber DSM 13855] gi|294508278|ref|YP_003572336.1| MdsD protein, [Salinibacter ruber M8] gi|83756051|gb|ABC44164.1| MdsD protein, putative [Salinibacter ruber DSM 13855] gi|294344606|emb|CBH25384.1| MdsD protein, putative [Salinibacter ruber M8] Length = 1092 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 88/214 (41%), Gaps = 29/214 (13%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 AP + + P +G R S Q D +++V + A ERLT Sbjct: 32 APTSAQDADPFVRHPAVHPDGDRIAFSYQGD----LWTVPVDGGAPERLTIHEAYEGEPR 87 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI------- 361 + PD +I F SDR G + LYVM + GS R++ W+P G L+ Sbjct: 88 WGPDGDRIAFTSDRFGNDDLYVMDAAGSTPTRLTHHSTGDAIG-GWTPTGKLLFTTRRTY 146 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR------KK--DGD 413 A ++S E +A V G+ +R L D+ AP SP GR + F R KK +G Sbjct: 147 AQAEWSDEIYA--VDGDGGTPDRRL--DAVGSAPRMSPDGRFIAFERGYNDITKKGYEGP 202 Query: 414 TGSKLYSIDLNGRNETLINTPAYASD---PQWVG 444 ++ D N+T YA + P W G Sbjct: 203 ADRNVWVYDT--ENDTYTQVTTYAGNDHTPVWTG 234 >gi|295689246|ref|YP_003592939.1| amidohydrolase [Caulobacter segnis ATCC 21756] gi|295431149|gb|ADG10321.1| amidohydrolase [Caulobacter segnis ATCC 21756] Length = 1055 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 13/159 (8%) Query: 262 APRFSSNGKRALISVQKDE---AMDIYS----VDLQSNATERLTNTLFINISASYSPDSS 314 +P ++ G +V D A D+Y+ V ++ RLT+ ++ +SPD S Sbjct: 47 SPVTATEGTNICATVSPDGRTVAFDVYAMLWLVPIEGGPARRLTDEIYEIAQPDWSPDGS 106 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY--FDPVWSPQGDLIAFTKFSGEKFA 372 + F+S R+G ++ + G+D + + Q + ++ +P WSP G IAF+ G ++ Sbjct: 107 TLAFQSYRDGNFHVWTI---GADGRGLMQRTKGAFDCREPRWSPDGKTIAFSSDRGGRYG 163 Query: 373 IGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + ++ G+ + P+WSP G+S++F+ K Sbjct: 164 VHLLDVASGAITPFSTGPGDEFEPSWSPDGKSVVFTVDK 202 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 13/150 (8%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T T NI A+ SPD + F+ L+++ G +R++ D+ P WSP Sbjct: 49 VTATEGTNICATVSPDGRTVAFDV----YAMLWLVPIEGGPARRLT-DEIYEIAQPDWSP 103 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS----NLQAPTWSPSGRSLIFSRKKDG 412 G +AF + F + + DG R L++ + + + P WSP G+++ FS + G Sbjct: 104 DGSTLAFQSYRDGNFHVWTIGADG---RGLMQRTKGAFDCREPRWSPDGKTIAFSSDRGG 160 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 G L + +G P +P W Sbjct: 161 RYGVHLLDV-ASGAITPFSTGPGDEFEPSW 189 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 20/202 (9%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + VA+ Y L I+ P +R+ + I P +S +G + Sbjct: 62 SPDGRTVAFDVY-------AMLWLVPIEGGPARRLTDEIYEIAQPDWSPDGSTLAFQSYR 114 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D ++++ + T F +SPD I F SDR G+ ++++ Sbjct: 115 DGNFHVWTIGADGRGLMQRTKGAFDCREPRWSPDGKTIAFSSDRGGRYGVHLLDVASGAI 174 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL--------VEDS 390 S F+P WSP G + FT +K I V DG++ + + Sbjct: 175 TPFSTGP-GDEFEPSWSPDGKSVVFTV---DKVRIDVQGLDGARRTVAKVKPSADRFNAA 230 Query: 391 NLQAPTWSPSGRSLIFSRKKDG 412 +L +P ++P GR ++F+ ++G Sbjct: 231 SLASPAFTPDGRDVVFTAIENG 252 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 + +P S +G++ + D +Y +D+ L F + ++SPD + + Sbjct: 333 VGSPALSPDGRQVVFRALND----LYLLDIGGGPATALIKDAFYKVDPAWSPDGKTLAYS 388 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +D+ GK +++ + + +++++ A+ WS G IAF +G F + V Sbjct: 389 TDKGGKLDIWLRDTASGESRQLTRFDGAA-VSSAWSRDGKSIAFLNQNGGLFVVDVAS-- 445 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFS 407 G R+ + PTW P R++ ++ Sbjct: 446 GQTRRVYGDLWEPGKPTWGPGDRTIAYA 473 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 33/226 (14%) Query: 204 RYLTPSRDQI---------LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 RY+ SRD + + P SP+ ++V + +D +YL+D A I Sbjct: 314 RYVKKSRDFLSAKTRPVVGVGSPALSPDGRQVVFRALND-----LYLLDIGGGPATALIK 368 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + + P +S +GK S K +DI+ D S + +LT +S+++S D Sbjct: 369 DAFYKV-DPAWSPDGKTLAYSTDKGGKLDIWLRDTASGESRQLTRFDGAAVSSAWSRDGK 427 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------- 367 I F + G L+V+ +R+ D P W P IA+ F Sbjct: 428 SIAFLNQNGG---LFVVDVASGQTRRVYGDLWEP-GKPTWGPGDRTIAYAAFKPYSARFR 483 Query: 368 ---GEKFAIGVMKKDGSQERLLVEDS----NLQAPTWSPSGRSLIF 406 E + V G+ + +L + S P WSP G+SL + Sbjct: 484 EGLSEILTVDVESGKGTYQPILPDRSLGTRGDDGPVWSPDGKSLAY 529 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFT 364 S + SPD Q+VF + LY++ G + +D A Y DP WSP G +A++ Sbjct: 335 SPALSPDGRQVVFRA----LNDLYLLDIGGGPATALIKD--AFYKVDPAWSPDGKTLAYS 388 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDG 412 G K I + + R L D + WS G+S+ F + G Sbjct: 389 TDKGGKLDIWLRDTASGESRQLTRFDGAAVSSAWSRDGKSIAFLNQNGG 437 >gi|116624613|ref|YP_826769.1| periplasmic component of the Tol biopolymer transporter-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116227775|gb|ABJ86484.1| Periplasmic component of the Tol biopolymer transport system-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 538 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 23/191 (12%) Query: 258 SMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ +P S++G+ A + +D +++Y + S RLT T ++SPDS + Sbjct: 43 ALTASPAISADGQLAAYASDRDARNLELYVQPIPSGMPVRLTRTPEDESEPAFSPDSGSL 102 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F S++ G +YVM + G D K ++Q DP +SP G IA+ ++ A V+ Sbjct: 103 AFRSEK-GGGGIYVMPARGGDAKLLAQGGR----DPRYSPDGKWIAYW----DQDAAWVI 153 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGRNETLIN 432 +G R + + P WSP G +L+ ++ + G G + GR + Sbjct: 154 PSNGGTARKIFATPGARHPIWSPDG-ALVLAQANNEFVVGAVGVAPAPAGIPGRLQ---- 208 Query: 433 TPAYASDPQWV 443 A PQW Sbjct: 209 ----ADSPQWT 215 >gi|116625879|ref|YP_828035.1| transcriptional regulatory protein-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116229041|gb|ABJ87750.1| transcriptional regulatory protein-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 370 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDL------QSNATERLTNTLFINISASYSPDSSQI 316 P S G R L V+ +I+ +DL S +L + + + + YSPD +++ Sbjct: 71 PAISRTGHR-LAYVRSTFDTNIWRLDLPREPNSSSGHPLKLIASTWRDNNPQYSPDGTKV 129 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G L+V ++GS +++ S P WSP G IAF F+ I V+ Sbjct: 130 AFVSDRAGSLDLWVTNADGSSPFQLTSQGAQS--TPRWSPDGRRIAFASFANSNENIFVI 187 Query: 377 KKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 +G + + +N +P WS GR + F+ + G Sbjct: 188 DAEGGATKPITTGPANHNSPCWSSDGRWIYFTSNRTG 224 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 7/176 (3%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++SP+ KVA+ + D L +++ T D + + PR+S +G+R + Sbjct: 120 PQYSPDGTKVAFVS-DRAGSLDLWV--TNADGSSPFQLTSQGAQSTPRWSPDGRRIAFAS 176 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + +I+ +D + AT+ +T + S +S D I F S+R GK +++ + G Sbjct: 177 FANSNENIFVIDAEGGATKPITTGPANHNSPCWSSDGRWIYFTSNRTGKAEIWRAPAEGG 236 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + SQ + P SP G +I + K E AI + +G E ++E + + Sbjct: 237 SE---SQMTHQGGWAPQESPDGKMIYYQKQFSET-AIWKIPPEGGVESPVLESATV 288 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +P +SP G +AF + V DGS L P WSP GR + F+ Sbjct: 119 NPQYSPDGTKVAFVSDRAGSLDLWVTNADGSSPFQLTSQGAQSTPRWSPDGRRIAFA--S 176 Query: 411 DGDTGSKLYSIDLNGRNETLI-------NTPAYASDPQWVGF 445 ++ ++ ID G I N+P ++SD +W+ F Sbjct: 177 FANSNENIFVIDAEGGATKPITTGPANHNSPCWSSDGRWIYF 218 >gi|157373159|ref|YP_001471759.1| amidohydrolase [Shewanella sediminis HAW-EB3] gi|157315533|gb|ABV34631.1| amidohydrolase [Shewanella sediminis HAW-EB3] Length = 1081 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 13/152 (8%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY + ++ + L + + YSPD I F SD +G Sbjct: 62 SPNGKHIVF----DMLGDIYQIPMKGGEAKVLAKGIAWQMQPVYSPDGKYIAFTSDEDGG 117 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMK 377 + ++VM+++GS+ + ++++ P WSP L+A F+ GE + V Sbjct: 118 DNIWVMEADGSNPRAVTEETFRLLNSPAWSPDSQYLVARKHFTGSRSLGAGEVWMYHVAG 177 Query: 378 KDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR 408 +G + + E +L P +SP GR + FS+ Sbjct: 178 GEGVKLTKRPNEQKDLGEPAYSPDGRYIYFSQ 209 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 57/283 (20%) Query: 208 PSRDQILFEPRFSPNQQKVAYAT---------YDDEDILRVYLMDTRIDRAPKRIGNFRS 258 P+ + L EP +SP+ + + ++ Y + + +Y +I R + G+ Sbjct: 187 PNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIY----KIKRYDTQTGDIEV 242 Query: 259 MI------LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTL---------- 301 +I + P S +GK+ L +++D +Y +DL+S TE+L L Sbjct: 243 LIEGTGGAIRPTPSPDGKK-LAYIKRDGFQSSLYMLDLRSGETEKLYGKLDRDMQETWAI 301 Query: 302 -FINISASYSPDSSQIVFES-------DREGKEQLYV-----MQSNGSDQKRISQDKEAS 348 + + S++ D+ +IVF + D E K + Q + R +QD + Sbjct: 302 HGVYPTMSWTGDNEEIVFWAGGKINKLDVESKSVKQIPFSIKTQLDVQPAVRFTQDLDKD 361 Query: 349 YFD------PVWSPQGDLIAFTKFSGEKFAIGVM---KKDGSQERLLVEDSNLQA--PTW 397 FD SP G + + K + + K DG + RL DS L+ P W Sbjct: 362 KFDVKMLRMAQVSPDGKKVVYEALG--KLWVKSLSDGKSDGKRTRLTKLDSELRELFPQW 419 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 S G+S++F+ D + GS N R +TL P +P Sbjct: 420 SRDGKSIVFTTWDDLEQGSVRVVSLRNKRVKTLTKEPGKYVEP 462 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 25/213 (11%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVY---LMDTRIDRAPKRIGNFRSMI--LAPRFS 266 ++L + SP+ +KV Y E + +++ L D + D R+ S + L P++S Sbjct: 366 KMLRMAQVSPDGKKVVY-----EALGKLWVKSLSDGKSDGKRTRLTKLDSELRELFPQWS 420 Query: 267 SNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG- 324 +GK + + D E + V L++ + LT + ++SPD S +V+ + G Sbjct: 421 RDGKSIVFTTWDDLEQGSVRVVSLRNKRVKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGY 480 Query: 325 --------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + LY + + G + +I+ D + P + + D + F GE + + Sbjct: 481 ITPRSWSQETGLYRVDTKGKENIKITPDG----YQPQFGAESDRVYFMDH-GETPELASI 535 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 DG Q+R+ + SP G+ L F+ + Sbjct: 536 NLDGFQKRVHYTSKHATEFRVSPDGKQLAFAER 568 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 22/159 (13%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI---SQDKEASYFDPVWSPQGDLIAF 363 A SPD ++V+E+ GK + + SD KR D E P WS G I F Sbjct: 371 AQVSPDGKKVVYEA--LGKLWVKSLSDGKSDGKRTRLTKLDSELRELFPQWSRDGKSIVF 428 Query: 364 TKFSG-EKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG--------- 412 T + E+ ++ V+ ++ + L E PT+SP G +++ + K G Sbjct: 429 TTWDDLEQGSVRVVSLRNKRVKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPRSWSQ 488 Query: 413 DTGSKLYSIDLNGRNETLINT----PAYASDPQWVGFMD 447 +TG LY +D G+ I P + ++ V FMD Sbjct: 489 ETG--LYRVDTKGKENIKITPDGYQPQFGAESDRVYFMD 525 >gi|226226607|ref|YP_002760713.1| hypothetical protein GAU_1201 [Gemmatimonas aurantiaca T-27] gi|226089798|dbj|BAH38243.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 997 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 13/172 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 P FS +GK+ + Q+ +Y +D++S N +R+ L +S S+SPD ++VF Sbjct: 382 PSFSLDGKQLAFTGQRGGRDVLYIMDVKSRNIVKRIDLELDQVLSPSFSPDGRKVVFSGM 441 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG- 380 R G LYV+ + ++ +D+ P WSP G IAF G + ++K Sbjct: 442 RHGSSDLYVVSLDAPGYTQLMKDQYGDLM-PQWSPDGKTIAFISDRGPDTDLDILKIGAW 500 Query: 381 --------SQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +Q+ ++ +A P W+P G+SL + + G LY D Sbjct: 501 KVVTFDLETQQMTILPGQGGRAINPQWAPDGKSLAYVTDRTGIANIFLYDFD 552 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 15/169 (8%) Query: 208 PSRDQILF---EPRFSPNQQKVAY-ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 P +Q+ F +P FS + +++A+ D+L Y+MD + KRI +L+P Sbjct: 370 PDFEQLRFIYSQPSFSLDGKQLAFTGQRGGRDVL--YIMDVKSRNIVKRIDLELDQVLSP 427 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 FS +G++ + S + + D+Y V L + +L + ++ +SPD I F SDR Sbjct: 428 SFSPDGRKVVFSGMRHGSSDLYVVSLDAPGYTQLMKDQYGDLMPQWSPDGKTIAFISDRG 487 Query: 324 GKEQLYVMQSNG---------SDQKRISQDKEASYFDPVWSPQGDLIAF 363 L +++ + Q I + +P W+P G +A+ Sbjct: 488 PDTDLDILKIGAWKVVTFDLETQQMTILPGQGGRAINPQWAPDGKSLAY 536 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 27/219 (12%) Query: 251 KRIGNFRSMILAPRFSSNGKR----ALISVQKDEAM-DIYSVDLQSNA-TERLTNTL--- 301 KR G+ +M +AP S++GK S+ + E ++Y + ++ RL T Sbjct: 311 KRTGSIANMFVAPALSNDGKFITYIGYGSLLRGEVFPEMYLANAETGKRITRLVKTTTNP 370 Query: 302 ------FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVW 354 FI S+S D Q+ F R G++ LY+M + KRI + + P + Sbjct: 371 DFEQLRFIYSQPSFSLDGKQLAFTGQRGGRDVLYIMDVKSRNIVKRIDLELD-QVLSPSF 429 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGD 413 SP G + F+ + V+ D L++D P WSP G+++ F + D Sbjct: 430 SPDGRKVVFSGMRHGSSDLYVVSLDAPGYTQLMKDQYGDLMPQWSPDGKTIAFISDRGPD 489 Query: 414 T--------GSKLYSIDLNGRNETLI-NTPAYASDPQWV 443 T K+ + DL + T++ A +PQW Sbjct: 490 TDLDILKIGAWKVVTFDLETQQMTILPGQGGRAINPQWA 528 >gi|15618691|ref|NP_224977.1| translocation protein TolB [Chlamydophila pneumoniae CWL029] gi|15836315|ref|NP_300839.1| translocation protein TolB [Chlamydophila pneumoniae J138] gi|16752259|ref|NP_445627.1| translocation protein TolB [Chlamydophila pneumoniae AR39] gi|33242141|ref|NP_877082.1| translocation protein TolB [Chlamydophila pneumoniae TW-183] gi|6647886|sp|Q9Z7C4|TOLB_CHLPN RecName: Full=Protein tolB; Flags: Precursor gi|4377091|gb|AAD18920.1| macromolecule transporter [Chlamydophila pneumoniae CWL029] gi|7190004|gb|AAF38861.1| tolB protein, putative [Chlamydophila pneumoniae AR39] gi|8979155|dbj|BAA98990.1| macromolecule transporter [Chlamydophila pneumoniae J138] gi|33236651|gb|AAP98739.1| TolB precursor [Chlamydophila pneumoniae TW-183] gi|269302571|gb|ACZ32671.1| tolB protein-like protein [Chlamydophila pneumoniae LPCoLN] Length = 431 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 20/307 (6%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPS 209 R+ H +D ++ ++TG G +I+F S+ + + L D DG N+ LT + Sbjct: 121 RQKIHHAADTVHYALTGIPGISAGKIVFALSSLGKDQKLKQGELWTTDYDGKNLAPLT-T 179 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P++ Y + + + + + K++ + L P FS Sbjct: 180 ECSLSITPKWVGVGSNFPYLYVSYKYGVPKIFLGSLENTEGKKVLPLKGNQLMPTFSP-- 237 Query: 270 KRALISVQKDEA----MDIYSVDLQSNATERLTNTLFINI----SASYSPDSSQIVFESD 321 ++ L++ D + I L S R L N + S++P+ SQ+VF S+ Sbjct: 238 RKKLLAFVADTYGNPDLFIQPFSLTSGPMGRPRRLLNENFGTQGNPSFNPEGSQLVFISN 297 Query: 322 REGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KD 379 ++G+ +LY+M + Q R+ K + P WSP G IAF I + Sbjct: 298 KDGRPRLYIMSLDPEPQAPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICIYDLSS 357 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-----P 434 G +L +N ++P+W+ R L+FS ++ L S+ N+ I P Sbjct: 358 GEDYQLTTSPTNKESPSWAIDSRHLVFSAGNAEESELYLISLVTKKTNKIAIGVGEKRFP 417 Query: 435 AYASDPQ 441 ++ + PQ Sbjct: 418 SWGAFPQ 424 >gi|295702778|ref|YP_003595853.1| putative peptidase [Bacillus megaterium DSM 319] gi|294800437|gb|ADF37503.1| putative peptidase [Bacillus megaterium DSM 319] Length = 659 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%) Query: 260 ILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDS 313 + P+ S +GK + +V++ + ++ ++ +D+++ T+RLT N S ++SPD Sbjct: 20 VYNPQISPDGKSVVYTVRETKKIENAYETQLFMLDIETKETKRLTYYKGNNHSPAWSPDG 79 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 I F SDR QLY++ G + + ++ D E +PVWSP D I F+ GEK Sbjct: 80 KWIAFLSDRSQAVQLYLLAVAGGEAEALT-DLEKGVSNPVWSPYSDEIMFSTKVGEK 135 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 10/108 (9%) Query: 310 SPDSSQIVFESDREGKE-------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD +V+ + RE K+ QL+++ + KR++ K ++ P WSP G IA Sbjct: 26 SPDGKSVVY-TVRETKKIENAYETQLFMLDIETKETKRLTYYKGNNH-SPAWSPDGKWIA 83 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK 409 F + + ++ G + L + + + P WSP ++FS K Sbjct: 84 FLSDRSQAVQLYLLAVAGGEAEALTDLEKGVSNPVWSPYSDEIMFSTK 131 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 29/212 (13%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVY-----LMDTRIDRAPKRIGNFRSMILAPRFSSN 268 ++ P+ SP+ + V Y + + I Y ++D + KR+ ++ +P +S + Sbjct: 20 VYNPQISPDGKSVVYTVRETKKIENAYETQLFMLDIET-KETKRLTYYKGNNHSPAWSPD 78 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK + +A+ +Y + + E LT+ + +SP S +I+F S + G++ + Sbjct: 79 GKWIAFLSDRSQAVQLYLLAVAGGEAEALTDLEKGVSNPVWSPYSDEIMF-STKVGEKAV 137 Query: 329 YVMQSNGSDQ----KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 V Q++ Q +R+ +AS + GE + V+K + Sbjct: 138 RVEQNHEYPQPYEVERLLYKSDASGY---------------LKGEYAQVAVVKLKNKEVT 182 Query: 385 LLVEDS-NLQAPTWSPSGRSLIF--SRKKDGD 413 L + + WSP S++F SR ++ D Sbjct: 183 FLTDGPYHHSVGCWSPDTNSIVFCSSRGENPD 214 >gi|114570230|ref|YP_756910.1| amidohydrolase [Maricaulis maris MCS10] gi|114340692|gb|ABI65972.1| amidohydrolase [Maricaulis maris MCS10] Length = 1062 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 17/139 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + A +++ L I +SPD SQI F SDR G + +++M +G + ++++ Sbjct: 70 DIYTMPVSGGAATNVSSGLPWEIQPRFSPDGSQIAFTSDRAGGDNIWIMDVDGGNVRQLT 129 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSN--- 391 ++ + W P G IA K +GE + V+ G Q LVE N Sbjct: 130 EESFRLLNNAAWHPSGRYIAARKHFTTTRSAGTGEIWFYHVLGGGGVQ---LVERPNENF 186 Query: 392 ---LQAPTWSPSGRSLIFS 407 L P +SP GR L ++ Sbjct: 187 QKELGEPVFSPDGRYLYYT 205 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A+ SPD SQIV+E+ QL+V ++G + +R+++D P WS G IAF Sbjct: 368 ATASPDGSQIVYET----LGQLWVRAADGGEPRRLTRDDGTRREMMPTWSADGRTIAFAT 423 Query: 366 FSGEKFA-IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 + + I + G +ER+L + + + P +SP G +++F + G Sbjct: 424 WDDDALGSIRTISVRGGRERVLTSQPGHYRNPRFSPDGETVVFEKGSGG 472 >gi|116252434|ref|YP_768272.1| TolB-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257082|emb|CAK08176.1| putative TolB-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 275 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G++ +D+ DIY++ + A RLT+ N YS D I F S R G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D + ++F SP D++ + F + +M Sbjct: 176 LMQIWRIHPDGTGLEQVTSDNQGNWFAHP-SPNNDMVLLLSYDPSVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG + L E + P WSP G + R Sbjct: 235 DMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVR 270 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 12/158 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ +++AY D D+ +Y + A R+ + P +S++G+ + + Sbjct: 116 WSPDGRQLAYCGIRD-DLFDIYTISVD-GGAETRLTHGEGRNDGPDYSADGQWIYFNSSR 173 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI--------VFESDREGKEQLYV 330 M I+ + E++T+ N A SP++ + VF+ R+ +L + Sbjct: 174 TGLMQIWRIHPDGTGLEQVTSDNQGNWFAHPSPNNDMVLLLSYDPSVFDHPRDLDVRLRL 233 Query: 331 MQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKF 366 M +G + K + + + + P WSP G+ A+ ++ Sbjct: 234 MDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 19/151 (12%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAF- 363 + ++SPD S ++ D LY + +G + ++ + D SP G I Sbjct: 27 APNFSPDGSYLLLNGD----GLLYRLPLDGGEVVKVDTGFAVNCNNDHGISPDGTKIVIS 82 Query: 364 --TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 T+F K AI + +G RL+ E+ WSP GR L + + D +Y+I Sbjct: 83 DKTEFG--KSAIYTLPIEGGTPRLITENLPSYWHGWSPDGRQLAYCGIR--DDLFDIYTI 138 Query: 422 DLNGRNETLI-------NTPAYASDPQWVGF 445 ++G ET + + P Y++D QW+ F Sbjct: 139 SVDGGAETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|315126925|ref|YP_004068928.1| hypothetical protein PSM_A1853 [Pseudoalteromonas sp. SM9913] gi|315015439|gb|ADT68777.1| hypothetical protein PSM_A1853 [Pseudoalteromonas sp. SM9913] Length = 1057 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + ++T+ + + +SPD I F SD+ G + +++M NG +Q ++ Sbjct: 70 DIYTMPMSGGKATKITSDIAWQMQPRFSPDGKHIAFTSDQGGGDNIWIMDVNGENQTAVT 129 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSN----LQ 393 + P WSP GD L+A F+ + + + K G + L + N L Sbjct: 130 DETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLG 189 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS Sbjct: 190 EPMFSPDGRYVYFSH 204 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PRFS +GK + + +I+ +D+ +T+ F + S ++SPD +V Sbjct: 92 MQPRFSPDGKHIAFTSDQGGGDNIWIMDVNGENQTAVTDETFRLLNSPAWSPDGDYLVAR 151 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS--GEK 370 F + R G ++++ G +++ ++ + +P++SP G + F+ + G+ Sbjct: 152 KHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKT 211 Query: 371 F------AIGVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K + G E ++ PT SP G+ L + ++ D T L Sbjct: 212 FHYSKDSVAGIYKIKRYDRETGDIETIISGMGGAIRPTPSPDGKKLAYIKRDDFQTSLYL 271 Query: 419 YSI 421 Y + Sbjct: 272 YDL 274 Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 15/94 (15%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGD 413 SP G+ + F I M G + + D Q P +SP G+ + F+ + G Sbjct: 57 SPDGETLVFDLLG----DIYTMPMSGGKATKITSDIAWQMQPRFSPDGKHIAFTSDQGG- 111 Query: 414 TGSKLYSIDLNGRNET--------LINTPAYASD 439 G ++ +D+NG N+T L+N+PA++ D Sbjct: 112 -GDNIWIMDVNGENQTAVTDETFRLLNSPAWSPD 144 >gi|300712709|ref|YP_003738522.1| periplasmic component of the Tol biopolymer transport system [Halalkalicoccus jeotgali B3] gi|299126393|gb|ADJ16731.1| periplasmic component of the Tol biopolymer transport system [Halalkalicoccus jeotgali B3] Length = 1046 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 43/265 (16%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 Q + PR SP+ + VA+ +D ++LM RI + P+RI + P +S +G+ Sbjct: 349 QGILTPRLSPDGEHVAFIALND-----LWLM--RIGQPPQRITDDSFYQADPAWSPDGRY 401 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 S ++ D+Y DLQ+ +++T ++A++SPD S+I F++ + + L Sbjct: 402 VTYSSDENGTQDLYVHDLQTGENQQVTARDDAVVAATWSPDGSKIAFQN--QHRTTLIAE 459 Query: 332 QSNGSDQKRISQDKEA--SYF---DPVWSPQGDLIAFT--KFSGEKFAIGVMK------- 377 ++ +S +EA F P WS G+ +A K ++F G + Sbjct: 460 VERSENEIELSDGQEAIRPLFLPGRPTWSADGNTVAVAAVKQYSDRFRSGTSQILTVDIE 519 Query: 378 -------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---- 426 G + + L N P WSP GR + F + + ++ +D G Sbjct: 520 TGEETFYPPGEEFKSLSTRGN-DGPVWSPDGRWMAFVVE----STLRVMPVDEAGEPTGP 574 Query: 427 ----NETLINTPAYASDPQWVGFMD 447 E + P ++ D +W+ +++ Sbjct: 575 ATQITEEATDAPTWSGDSEWLLYLN 599 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 216 EPRFSPNQQKVAYATYDDE--DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 +P ++P+ ++A+ Y D DI + + I + + R P++S +G + Sbjct: 105 QPDYAPDGARIAFQGYGDGNFDIWTMAADGSDIQQITDGFWDDRK----PQWSPDGTQIA 160 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------- 326 S ++E DI++VD+++ ++ T+ N ++SPD ++I + +D G+ Sbjct: 161 FSSDRNENYDIWTVDIETGDLQQWTDDSSENFEPTWSPDGTEIAYVADPTGEYGDGDDSP 220 Query: 327 -QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + + +G + +S + P WSP G+ +A+ + + ++ G Sbjct: 221 ITIEAVNQDGETRTLVSGQMGQTLHSPSWSPNGEDLAYVRINEQENRTG 269 >gi|269837252|ref|YP_003319480.1| WD40 domain-containing protein beta Propeller [Sphaerobacter thermophilus DSM 20745] gi|269786515|gb|ACZ38658.1| WD40 domain protein beta Propeller [Sphaerobacter thermophilus DSM 20745] Length = 332 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 309 YSPDSSQIVF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 +SPD +IVF E+D + QL+V+ N + + E +Y DP WSP G IA Sbjct: 183 FSPDGQRIVFAQRTTGENDLQRWTQLWVVDLNTEQLFPLVETNEGAY-DPAWSPDGRWIA 241 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 +T +G + I V+ +G L N++APTWSP G + F + G Sbjct: 242 YTGRTGAENDIWVVPAEGGTPIRLTNFGNVRAPTWSPDGSWIAFLQTDGG 291 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 29/166 (17%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS------QDKEASY-------FDPVWS 355 +S D S+ VF + LY+ ++GS ++++ Q +Y DPVWS Sbjct: 77 WSGDGSRFVFVRTGDAFSDLYIANADGSGMEQLTFYQPPIQPGTEAYIREAMWALDPVWS 136 Query: 356 PQGDLIAFTKFSGE-KFAIGVMKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSRKK 410 GD IAF K + +M G + N++ P +SP G+ ++F+++ Sbjct: 137 RAGDAIAFVSDRNTLKNFLWLMPAPGENPYQIQASTYNGENVEHPDFSPDGQRIVFAQRT 196 Query: 411 DGDT----GSKLYSIDLNGRNE-TLINT------PAYASDPQWVGF 445 G+ ++L+ +DLN L+ T PA++ D +W+ + Sbjct: 197 TGENDLQRWTQLWVVDLNTEQLFPLVETNEGAYDPAWSPDGRWIAY 242 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 263 PRFSSNGKRALISVQKDEAMDI------YSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P FS +G+R + + + D+ + VDL + L T ++SPD I Sbjct: 181 PDFSPDGQRIVFAQRTTGENDLQRWTQLWVVDLNTEQLFPLVETNEGAYDPAWSPDGRWI 240 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + + ++V+ + G R++ P WSP G IAF + G F Sbjct: 241 AYTGRTGAENDIWVVPAEGGTPIRLTNFGNVRA--PTWSPDGSWIAFLQTDGGSF 293 >gi|262198463|ref|YP_003269672.1| peptidase S41 [Haliangium ochraceum DSM 14365] gi|262081810|gb|ACY17779.1| peptidase S41 [Haliangium ochraceum DSM 14365] Length = 1167 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 22/219 (10%) Query: 233 DEDILRVYLMDTRIDRAPKRIG---NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +E L +Y+ D + R + + + S L+P +GKRAL + D +++V + Sbjct: 348 EERKLSIYVPDDGLSRQSEWVSAGQHIESFSLSP----DGKRALFVGRGD----LFTVPV 399 Query: 290 QSNATERLTNTLFIN-ISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEA 347 + L++T + AS+ PD S +V+ SD G+E+L+V+ G S +++++ Sbjct: 400 EHGLVRNLSHTPNAHEREASWMPDGSHVVYVSDWSGEEELWVVDQRGQSPARQLTKGNGG 459 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP--TWSPSGRSLI 405 ++P +SP G +A++ G F V+ G Q + ++ +A WSP G+ L Sbjct: 460 RLYEPRFSPDGRHVAYSDHRGRIF---VIPAAGGQPLEVADEPFGRADDYRWSPDGQFLA 516 Query: 406 FSRKKDGDTG-SKLYSIDLNGRNETLINTPAY-ASDPQW 442 FS DTG S +Y + R I P + P W Sbjct: 517 FSLSD--DTGLSSIYIWGMRDRRLRRITGPEFDEGSPVW 553 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 S +++VS+ SG + L V+D+ G + R LT L+EPRFSP+ + VAY+ + Sbjct: 424 GSHVVYVSD--WSG--EEELWVVDQRGQSPARQLTKGNGGRLYEPRFSPDGRHVAYSDHR 479 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQS 291 + ++ A + G R+S +G+ S+ D + IY ++ Sbjct: 480 GRIFVIPAAGGQPLEVADEPFGRADDY----RWSPDGQFLAFSLSDDTGLSSIYIWGMRD 535 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 R+T F S + P I F S RE + Q+ ++ N Sbjct: 536 RRLRRITGPEFDEGSPVWHPGGEHIFFLSRREFQPQIGQLEWN 578 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 28/189 (14%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ RLT + + +SPD I F G EQ+YV+ G ++ Sbjct: 99 AGDLWLARTSGGTAARLTAHPGLELFPKFSPDGQWIAFTGQYGGDEQVYVISVGGGTPRQ 158 Query: 341 ISQ-------DKEASYFDPV--WSPQGDLIAFTKFSGEKFAIGVMK------KDGSQERL 385 ++ Y + V W+P G + F + + +G + G L Sbjct: 159 LTYYPARGPLPARWGYDNQVYGWTPDGTQVLFRSLR-DSYDVGSSRLYTAAVSGGMPSPL 217 Query: 386 LVEDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSKLYSIDL-NGRNETLINTPA 435 + ++ A SP G+ +++S ++ G LY D+ N + + + P Sbjct: 218 PMPEAGAGA--LSPDGKRVVYSPLFRDFRTWKRYAGGWAQDLYVFDIDNTSVQRITDDPR 275 Query: 436 YASDPQWVG 444 DP W+G Sbjct: 276 VDRDPMWIG 284 >gi|294146610|ref|YP_003559276.1| putative amidohydrolase [Sphingobium japonicum UT26S] gi|292677027|dbj|BAI98544.1| putative amidohydrolase [Sphingobium japonicum UT26S] Length = 992 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 2/153 (1%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 KRI ++ + P +S +G R +D D++++ + +LT + + ++S Sbjct: 82 KRITDYFNDARQPVWSPDGSRLAYFAYRDGGYDLWTIKPDGSDMRKLTQGAWDDREPAWS 141 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD I F SDR G ++ + K++S + P WSP G IA+ G K Sbjct: 142 PDGRTIAFSSDRSGNYDIWTLDVASGAVKQVSSNPREDRM-PSWSPDGASIAYAGIDGGK 200 Query: 371 FAI-GVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 A+ DG + L + AP++ P+G+ Sbjct: 201 TALYATTVADGKESLLKQVAGRVDAPSYGPTGQ 233 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I+ P S +G R A +++ D+Y + + A E LT ++ ++SPD I + Sbjct: 321 IVHPTISPDGSRIAFVALG-----DLYLMSSKGGAPENLTRDAALDADPAWSPDGQSIAY 375 Query: 319 ESDREGK-EQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 SD+ G QL++ G D+K S D + WSP G IAF G GV Sbjct: 376 TSDKGGGLPQLWMRDLKTGKDRKLTSIDTQP--LGAAWSPDGSRIAFLDVDGRWGVAGVC 433 Query: 377 KKD---GSQERLLVEDSNLQAPTWSPSGR--SLIFSRKKDG---DTGSKLYSIDLNGRNE 428 D G RL +PTWSP G+ ++ S K + +++Y I +G+ E Sbjct: 434 VVDVATGKITRLQASLGQPGSPTWSPDGKYVAIALSYKYSNSFREGTNQIYVIPADGKGE 493 Query: 429 TLINTP 434 P Sbjct: 494 PFWQIP 499 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 35/199 (17%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +A S +GK + +Q ++ + + +R+T+ +SPD S++ + + Sbjct: 52 MAVSVSPDGKWLAVDLQGS----LWIIPAKGGKAKRITDYFNDARQPVWSPDGSRLAYFA 107 Query: 321 DREGKEQLYVMQSNGSDQKRISQ----DKEASYFDPVWSPQGDLIAFTKFSGEKFAI--- 373 R+G L+ ++ +GSD ++++Q D+E P WSP G IAF+ + I Sbjct: 108 YRDGGYDLWTIKPDGSDMRKLTQGAWDDRE-----PAWSPDGRTIAFSSDRSGNYDIWTL 162 Query: 374 ----GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 G +K+ S R ED + P+WSP G S+ ++ G T LY+ + E+ Sbjct: 163 DVASGAVKQVSSNPR---ED---RMPSWSPDGASIAYAGIDGGKT--ALYATTVADGKES 214 Query: 430 L-------INTPAYASDPQ 441 L ++ P+Y Q Sbjct: 215 LLKQVAGRVDAPSYGPTGQ 233 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 14/115 (12%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD----PVWSPQGD 359 +++ S SPD + D +G L+++ + G KRI+ YF+ PVWSP G Sbjct: 51 SMAVSVSPDGKWLAV--DLQG--SLWIIPAKGGKAKRITD-----YFNDARQPVWSPDGS 101 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGD 413 +A+ + + + +K DGS R L + + + + P WSP GR++ FS + G+ Sbjct: 102 RLAYFAYRDGGYDLWTIKPDGSDMRKLTQGAWDDREPAWSPDGRTIAFSSDRSGN 156 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 27/205 (13%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATYD 232 SRI FV+ L +M G LT RD L +P +SP+ Q +AY + Sbjct: 330 GSRIAFVA--------LGDLYLMSSKGGAPENLT--RDAALDADPAWSPDGQSIAYTSDK 379 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAM-DIYSVDLQ 290 + ++++ D + + +++ + + L +S +G R A + V + + VD+ Sbjct: 380 GGGLPQLWMRDLKTGKD-RKLTSIDTQPLGAAWSPDGSRIAFLDVDGRWGVAGVCVVDVA 438 Query: 291 SNATERLTNTLFINISASYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQK--RI 341 + RL +L S ++SPD + S REG Q+YV+ ++G + +I Sbjct: 439 TGKITRLQASLGQPGSPTWSPDGKYVAIALSYKYSNSFREGTNQIYVIPADGKGEPFWQI 498 Query: 342 SQDKEAS----YFDPVWSPQGDLIA 362 Q + P WSP G +A Sbjct: 499 PQANAGTDTRGGGGPAWSPDGTKMA 523 >gi|126178726|ref|YP_001046691.1| peptidase S9B dipeptidylpeptidase IV subunit [Methanoculleus marisnigri JR1] gi|125861520|gb|ABN56709.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Methanoculleus marisnigri JR1] Length = 395 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 129/297 (43%), Gaps = 50/297 (16%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF---EPRFSPNQQKVAYAT 230 +RI FVS V I+ V++RDG N +T R LF +P +SP+ +K+ + + Sbjct: 57 GARIAFVSSDGVHAGIR----VIERDGQNPVPVTDDRSWNLFTEFDP-WSPDGKKLLFLS 111 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFS-------SNGKRAL----- 273 D L ++ M+ P G R ++ P S ++GKR + Sbjct: 112 -DGGRGLDLWTMN------PDGTGRVRLTEGGRIVPIPGLSGYGADWNTDGKRIVYTSCL 164 Query: 274 ----------ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +S + EA DI+ +D ++LT + + P +I + +DR Sbjct: 165 FDDAAIQEVNLSAIRTEA-DIWIMDADGGNKKQLTTDGDARLPL-WQPQGDRIAYLADRS 222 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----EKFAIGVMKKD 379 G +++ MQS+G+ + +++ E S + WSP G IA+ S +F++ ++ D Sbjct: 223 GNREIWTMQSDGTGKTQVTF-SEGSVSEYSWSPDGTRIAYVVASPPGTLPEFSLRIINSD 281 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 GS L + +P WSP G + F R + D + D +G + PAY Sbjct: 282 GSGSEQLTTGNRDTSPVWSPDGTRIAF-RSESRDRALWVMKSDGSGLAPLGPDNPAY 337 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 26/218 (11%) Query: 165 SITGEKGDFNS---RILFVS---------ESVVSGI-IKNSLCVMDRDGANIRYLTPSRD 211 ++G D+N+ RI++ S E +S I + + +MD DG N + LT D Sbjct: 143 GLSGYGADWNTDGKRIVYTSCLFDDAAIQEVNLSAIRTEADIWIMDADGGNKKQLTTDGD 202 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-RFSSNGK 270 L P + P ++AY D ++ M + D K F ++ +S +G Sbjct: 203 ARL--PLWQPQGDRIAYLA-DRSGNREIWTMQS--DGTGKTQVTFSEGSVSEYSWSPDGT 257 Query: 271 R-ALISVQKDEAMDIYS---VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 R A + + +S ++ + +E+LT T + S +SPD ++I F S+ + Sbjct: 258 RIAYVVASPPGTLPEFSLRIINSDGSGSEQLT-TGNRDTSPVWSPDGTRIAFRSESRDR- 315 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 L+VM+S+GS + D A Y WSP G I + Sbjct: 316 ALWVMKSDGSGLAPLGPDNPA-YMMQQWSPDGRTIVVS 352 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Query: 348 SYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT----WSPSG 401 S FD P WSP G IAF G I V+++DG + +D + T WSP G Sbjct: 45 SAFDSYPFWSPDGARIAFVSSDGVHAGIRVIERDGQNPVPVTDDRSWNLFTEFDPWSPDG 104 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNG 425 + L+F DG G L++++ +G Sbjct: 105 KKLLF--LSDGGRGLDLWTMNPDG 126 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 24/170 (14%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY---FDP 352 +LTN + +SPD ++I F S + V++ +G + ++ D+ + FDP Sbjct: 40 QLTNDSAFDSYPFWSPDGARIAFVSSDGVHAGIRVIERDGQNPVPVTDDRSWNLFTEFDP 99 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--------QAPTWSPSGRSL 404 WSP G + F G + M DG+ L E + W+ G+ + Sbjct: 100 -WSPDGKKLLFLSDGGRGLDLWTMNPDGTGRVRLTEGGRIVPIPGLSGYGADWNTDGKRI 158 Query: 405 IFSRKKDGD------------TGSKLYSIDLNGRNETLINTPAYASDPQW 442 +++ D T + ++ +D +G N+ + T A P W Sbjct: 159 VYTSCLFDDAAIQEVNLSAIRTEADIWIMDADGGNKKQLTTDGDARLPLW 208 >gi|298675402|ref|YP_003727152.1| WD40 domain-containing protein beta Propeller [Methanohalobium evestigatum Z-7303] gi|298288390|gb|ADI74356.1| WD40 domain protein beta Propeller [Methanohalobium evestigatum Z-7303] Length = 628 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 117/260 (45%), Gaps = 25/260 (9%) Query: 192 SLCVMDRDGANIRYL-----TP-----SRDQILFEPRFSPNQQKVAYATYD---DEDILR 238 +L +M+ DG +I+ + TP D+++ P +SP+ Y + + + +IL Sbjct: 101 ALYLMEADGFDIKRIAWGECTPYTRKVGNDKLIGLPSWSPDGDVFTYTSEELAKNGNILG 160 Query: 239 VYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATE 295 +L+ + G+F S + ++S +G L +K E Y +DL N T Sbjct: 161 EFLIVDADNLNTIEKGSFISNKIDFIKKWSPDGSYLLYRGYKKGEGPKCYLLDLTRNITR 220 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R T + ++SP ++I F + +G E +V + + + I K +S +P+WS Sbjct: 221 RFPITQYNPEDITWSPKGNKIAFLGEDKGNESAFVYNLDNGNLRNIFSTKNSSIHNPLWS 280 Query: 356 PQGDLIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P G +AF+K + I + +G +L + W S + L+++ Sbjct: 281 PDGRKLAFSKIEDNNVKDVYVIDINVVNGRPYKLTTLHGGILVE-WLDSEK-LLYTEYSP 338 Query: 412 GDTGSKLYSIDLNGRNETLI 431 D LYSI +N RN+TL+ Sbjct: 339 EDN---LYSISVNSRNKTLL 355 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 23/232 (9%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAP 250 S V + D N+R + +++ + P +SP+ +K+A++ +D ++ VY++D + + P Sbjct: 252 SAFVYNLDNGNLRNIFSTKNSSIHNPLWSPDGRKLAFSKIEDNNVKDVYVIDINVVNGRP 311 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASY 309 ++ IL S L+ + ++YS+ + S N T +T I SY Sbjct: 312 YKLTTLHGGILVEWLDS---EKLLYTEYSPEDNLYSISVNSRNKTLLYNSTNESGIDYSY 368 Query: 310 SPDS-----SQIVFESDREG---KEQLYV-----MQSNGSDQKRISQDKEASYFDPVWSP 356 S S + VF ++ G K Y+ M ++GS++K + + F+ W Sbjct: 369 SDHSFVDPTGEFVFVEEQTGLNYKTNGYINKFTLMDTDGSNKKDWKINPQG--FE--WCG 424 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 L+ + + V S+ V S+++ W+P+GR L F+R Sbjct: 425 DDLLLEVVTENDTNKLVMVNASTKSESNTSVNGSHIEKINWNPTGRYL-FTR 475 >gi|297156269|gb|ADI05981.1| amidohydrolase [Streptomyces bingchenggensis BCW-1] Length = 1088 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 6/151 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +++V RLT +SPD +V++S +G L++ +++G+ +R++ Sbjct: 94 LWTVPAAGGEATRLTGIDQEATEPDFSPDGRHLVYQSYTDGNFHLWLARADGTGARRLTS 153 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQ--APTWSP 399 A + +P +SP G IA+ + ++AI V+ D ++ D+ +Q P W P Sbjct: 154 GG-ADHREPRFSPDGKRIAYAGEADGRYAIHVLDLDSGATKVWAPSTDATVQQAQPFWRP 212 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 G+++ F+ K GD + +D +G+ TL Sbjct: 213 DGKAIAFTSGK-GDAPQSVVQVDADGKRTTL 242 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 10/180 (5%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID-RAPKRIGNFRSMILAPRFSSNG 269 DQ EP FSP+ + + Y +Y D + +L R D +R+ + + PRFS +G Sbjct: 111 DQEATEPDFSPDGRHLVYQSYTDGNF---HLWLARADGTGARRLTSGGADHREPRFSPDG 167 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS---YSPDSSQIVFESDREGKE 326 KR + + D I+ +DL S AT+ + + + + PD I F S + Sbjct: 168 KRIAYAGEADGRYAIHVLDLDSGATKVWAPSTDATVQQAQPFWRPDGKAIAFTSGKGDAP 227 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI---GVMKKDGSQE 383 Q V + ++ E P +SP G A+ + A+ GV D ++ Sbjct: 228 QSVVQVDADGKRTTLATVTEGRVAGPSFSPDGARFAYVHLASAATALVVDGVTVSDAEED 287 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +G+ + D ++ RLT+ + +SPD +I + + Sbjct: 117 PDFSPDGRHLVYQSYTDGNFHLWLARADGTGARRLTSGGADHREPRFSPDGKRIAYAGEA 176 Query: 323 EGKEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKD 379 +G+ ++V+ + K S D P W P G IAFT G+ ++ + D Sbjct: 177 DGRYAIHVLDLDSGATKVWAPSTDATVQQAQPFWRPDGKAIAFTSGKGDAPQSVVQVDAD 236 Query: 380 GSQERL-LVEDSNLQAPTWSPSGRSLIF 406 G + L V + + P++SP G + Sbjct: 237 GKRTTLATVTEGRVAGPSFSPDGARFAY 264 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 4/149 (2%) Query: 260 ILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I++P S +G+R + D + + + +A + + + +N ++SPD S +V+ Sbjct: 363 IVSPSLSPDGERIAFAALGDIWLAPVNPPRGKGSAPKAVVSDGHLNTDPAWSPDGSALVY 422 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G L+ +R++ ++A+ P +SP G +AF +G + V Sbjct: 423 VSDRGGAADLWTYDIADGTTRRLTDLQDAAS-GPAFSPDGASVAFGLGAGTLHTVDVAT- 480 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 G+ ++ + PT+S GR L + Sbjct: 481 -GAVRKVAGPLNAPGRPTFSADGRKLSLA 508 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR----APKRIGNFRSMILAPRFSSNG 269 + P SP+ +++A+A D ++L R APK + + + P +S +G Sbjct: 363 IVSPSLSPDGERIAFAALGD-----IWLAPVNPPRGKGSAPKAVVSDGHLNTDPAWSPDG 417 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + + A D+++ D+ T RLT+ ++SPD + + F Sbjct: 418 SALVYVSDRGGAADLWTYDIADGTTRRLTDLQDAASGPAFSPDGASVAF 466 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Query: 352 PVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRK 409 P SP G+ IAF A + + GS + +V D +L P WSP G +L++ Sbjct: 366 PSLSPDGERIAFAALGDIWLAPVNPPRGKGSAPKAVVSDGHLNTDPAWSPDGSALVYVSD 425 Query: 410 KDGDTGSKLYSIDL-NGRNETLINTPAYASDP 440 + G + L++ D+ +G L + AS P Sbjct: 426 RGG--AADLWTYDIADGTTRRLTDLQDAASGP 455 >gi|284035677|ref|YP_003385607.1| amidohydrolase [Spirosoma linguale DSM 74] gi|283814970|gb|ADB36808.1| amidohydrolase [Spirosoma linguale DSM 74] Length = 1005 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 3/154 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +G+R D I++V ++LTN ++ + +SPD Q+VF SDR Sbjct: 86 PSWSPDGQRIAFHSFWDGRYHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVFASDR 145 Query: 323 EGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 G ++ Q N +D K + + F+P +SP G IA+ + + ++ G+ Sbjct: 146 SGNYDIW--QLNLADGKLTQLTNGSGNEFNPAYSPNGKQIAYISDRTDAPGVYILPLGGT 203 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 ++ + S L +W P G L ++ + +G Sbjct: 204 EKLVAPTMSKLAGVSWHPDGSQLFYNLLNNTQSG 237 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R+T T N++A SPD QIV D +G ++++ + G K ++ D P WS Sbjct: 35 RVTVTEGTNMAADLSPDKRQIVI--DLQGT--IWLLPATGGVAKPLT-DPLGDCRQPSWS 89 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 P G IAF F ++ I + G + + L + + P WSP G+ L+F+ + G+ Sbjct: 90 PDGQRIAFHSFWDGRYHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVFASDRSGN- 148 Query: 415 GSKLYSIDL-NGRNETLIN------TPAYASDPQWVGFM 446 ++ ++L +G+ L N PAY+ + + + ++ Sbjct: 149 -YDIWQLNLADGKLTQLTNGSGNEFNPAYSPNGKQIAYI 186 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKRALI 274 +P +SP+ Q++A+ ++ D R ++ P+++ N P +S +GK+ + Sbjct: 85 QPSWSPDGQRIAFHSFWDG---RYHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVF 141 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + + DI+ ++L +LTN + +YSP+ QI + SDR +Y++ Sbjct: 142 ASDRSGNYDIWQLNLADGKLTQLTNGSGNEFNPAYSPNGKQIAYISDRTDAPGVYILPLG 201 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G++ ++ + W P G + + + + + + + R+L E Sbjct: 202 GTE--KLVAPTMSKLAGVSWHPDGSQLFYNLLNNTQSGLTSVSVSDGKARMLTE 253 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 34/218 (15%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 EP +SP+ K+ Y + D + V++ D + + + + + + P +S +G + + Sbjct: 365 EPGWSPDGSKLTYVS-DRNGNMDVWIRDLKTGQD-RLLADMSDDLHYPTWSPDGSK-IAF 421 Query: 276 VQKDE-----------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---- 320 Q D A Y+ D+ + T +L +LF+ AS+SPD + + Sbjct: 422 YQSDPRNAWGRSTLYVADVTYTADVTAPKTRKLHESLFVPSQASWSPDGKTLAVSALHPY 481 Query: 321 ---DREGKEQLYVMQSNGSDQKRISQDKEASYF-----DPVWSPQGDLIAFTKFSGEKFA 372 REG ++ ++ +G + + +S S PVWSP G +A+ G + Sbjct: 482 SSRYREGVSEVLLLSFDGKNDRYVSPAPNHSLATRGQNGPVWSPDGTKMAYV-LDGLLWI 540 Query: 373 IGVMKKDGSQ----ERLLVEDSNLQAPTWSPSGRSLIF 406 V K DG+ +L E + + PTW+ +SL+F Sbjct: 541 TDV-KPDGTPIGTPRQLTTEQA--ETPTWTSDSKSLLF 575 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 31/212 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ +++A+A D ++L+ T+ ++ P+R+ ++M + P +S +G + + Sbjct: 328 ISPDGKQIAFAALGD-----LWLL-TKGNKVPQRLTQGKAMEVEPGWSPDGSKLTYVSDR 381 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVF-ESDRE---GKEQLYVMQS 333 + MD++ DL++ +RL + ++ ++SPD S+I F +SD G+ LYV Sbjct: 382 NGNMDVWIRDLKT-GQDRLLADMSDDLHYPTWSPDGSKIAFYQSDPRNAWGRSTLYVADV 440 Query: 334 NGSDQKRISQDK--EASYFDP---VWSPQGDLIAFTKFS--GEKFAIGV-----MKKDGS 381 + + + S F P WSP G +A + ++ GV + DG Sbjct: 441 TYTADVTAPKTRKLHESLFVPSQASWSPDGKTLAVSALHPYSSRYREGVSEVLLLSFDGK 500 Query: 382 QERLLVEDSNL-------QAPTWSPSGRSLIF 406 +R + N P WSP G + + Sbjct: 501 NDRYVSPAPNHSLATRGQNGPVWSPDGTKMAY 532 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 38/179 (21%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ + + +RLT + + +SPD S++ + SDR G +++ + Q R+ Sbjct: 342 DLWLLTKGNKVPQRLTQGKAMEVEPGWSPDGSKLTYVSDRNGNMDVWIRDLK-TGQDRLL 400 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED----SNLQAP--- 395 D P WSP G IAF + S + A G + L V D +++ AP Sbjct: 401 ADMSDDLHYPTWSPDGSKIAFYQ-SDPRNAWG-------RSTLYVADVTYTADVTAPKTR 452 Query: 396 ------------TWSPSGRSLIF-------SRKKDGDTGSKLYSIDLNGRNETLINTPA 435 +WSP G++L SR ++G + L S D G+N+ + +PA Sbjct: 453 KLHESLFVPSQASWSPDGKTLAVSALHPYSSRYREGVSEVLLLSFD--GKNDRYV-SPA 508 >gi|162448922|ref|YP_001611289.1| tolB protein [Sorangium cellulosum 'So ce 56'] gi|161159504|emb|CAN90809.1| tolB protein [Sorangium cellulosum 'So ce 56'] Length = 444 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 84/378 (22%), Positives = 156/378 (41%), Gaps = 59/378 (15%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + VV +DL+ F ++ + + DS + W++ G + +V+ K D++ Sbjct: 72 IHSVVRRDLELCGEFEVLPDSAAPDGLYLSDSPVDVKAWSAKGVEAVVSVSGKKVAADKV 131 Query: 125 RVEFRLWDV-KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 + + + V + + + KKF R +H ++D + ++TG+ G F S + F S Sbjct: 132 ELVGQAFLVNRGQAPVFDKKFIVPLRDVRFESHRVADQLIGALTGQNGGFASHMTFASG- 190 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 SG ++ + D DG + R ++P DQ P F N+Q + YA D +V+ Sbjct: 191 --SGSLRRVFTI-DADGHDARAVSPP-DQTAIAPAFGKNEQ-LHYAASVKGDEYKVFTPA 245 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS-VDLQS----------- 291 P + + FS + + +S+ + ++S DLQS Sbjct: 246 GGPLPLP-----VKGSVYGIAFSKDRAQVALSIGVGSTIKLFSGPDLQSIKPASEVGMAL 300 Query: 292 ------------NATERLTNTLFINISASYSPD---SSQIVFESDREGKEQLYVM----- 331 + R +++ A SPD +S F + +G + +Y + Sbjct: 301 HPVFTPTGKLAFSGEGRYGQRIYVGDKA-ISPDGLFASAPTFCNHPDGVKAVYAVGVGKN 359 Query: 332 ------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVMKKDGSQE 383 G R++Q++ + + P SP G L+AF T+ SGE + VM+ DG + Sbjct: 360 TDLVASGETGGGLVRLTQNQGRNGY-PACSPDGRLVAFFSTRTSGEGPGLYVMRVDGQRP 418 Query: 384 RLLVEDSNLQAPT--WSP 399 + + SNL + W P Sbjct: 419 KRI---SNLLGDSLRWDP 433 >gi|332304917|ref|YP_004432768.1| amidohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172246|gb|AEE21500.1| amidohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1114 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 12/138 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + LT NI ++SPD S+I F SDR+G ++VM S+GS+ +++ Sbjct: 85 DIYVSPIAGGEAKSLTQDFAWNIQPTFSPDGSKIAFISDRDGLSNVWVMNSDGSNLVQVT 144 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDS---- 390 +K P WSP G I K +GE + DG + V + Sbjct: 145 DEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIWLYHHSGGDGMVIKKRVHGNPDQK 204 Query: 391 NLQAPTWSPSGRSLIFSR 408 N+ P +SP G+ L +++ Sbjct: 205 NIADPAFSPDGKYLYYTQ 222 Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD I+F++ +LYV KR+++ + + P +S G I FT + Sbjct: 384 AQKSPDGKSILFQA----LGKLYVKDIKSGKAKRLTRQNDHDEYYPRYSHDGKKIVFTTW 439 Query: 367 SGEKF-AIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 S E ++ + G E+++ E + P++S + + +++K G + YS++ Sbjct: 440 SDETLGSVRTVSASGRSEKVITTEPGHYIEPSFSTDDKLITYNKKTGGYLLAPEYSVE 497 >gi|300789887|ref|YP_003770178.1| hypothetical protein AMED_8073 [Amycolatopsis mediterranei U32] gi|299799401|gb|ADJ49776.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 922 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+SA+ SPD I + ++V+ + G +R++ D + + P WSP G + F Sbjct: 40 NLSAALSPDGRWIAVDL----VTGIWVLPAGGGRARRLTDDLQDATL-PTWSPDGRRLVF 94 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + F + V+ G R L E + + P +SP G L FS +DG G L +D Sbjct: 95 QSYRDGNFHLYVIDAAGGTPRKLTEGRFDHREPVFSPDGTKLAFSSDRDGSYGIHL--LD 152 Query: 423 L-NGRNETLINTPAYASDPQW 442 L +G T+++TP + P+W Sbjct: 153 LASGAISTVVSTPDEEASPRW 173 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +G+R + +D +Y +D +LT F + +SPD +++ F SDR Sbjct: 83 PTWSPDGRRLVFQSYRDGNFHLYVIDAAGGTPRKLTEGRFDHREPVFSPDGTKLAFSSDR 142 Query: 323 EGKEQLYVMQ-SNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KD 379 +G ++++ ++G+ +S D+EAS P WS G I FT AI V+ Sbjct: 143 DGSYGIHLLDLASGAISTVVSTPDEEAS---PRWSADGTKIVFTV---NDTAIDVVTLAT 196 Query: 380 GSQERLLVEDS--NLQAPTWSPSGR 402 G++ RL+ L P + P G+ Sbjct: 197 GARTRLVTATGADKLYGPAFGPGGQ 221 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D I+ + RLT+ L ++SPD ++VF+S R+G LYV+ + G Sbjct: 52 IAVDLVTGIWVLPAGGGRARRLTDDLQDATLPTWSPDGRRLVFQSYRDGNFHLYVIDAAG 111 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA- 394 +++++ + + +PV+SP G +AF+ + I ++ +V + +A Sbjct: 112 GTPRKLTEGR-FDHREPVFSPDGTKLAFSSDRDGSYGIHLLDLASGAISTVVSTPDEEAS 170 Query: 395 PTWSPSGRSLIFS 407 P WS G ++F+ Sbjct: 171 PRWSADGTKIVFT 183 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 20/173 (11%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I +P S +GKR I+ + A IY V +RL + N + PD +++++ Sbjct: 310 IASPVVSRDGKR--IAFRALNA--IYVVAAGGGRPQRLIGDGYFNSDPDFHPDGTKLLYT 365 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G L+ + G+ + + P WSP G +A+ G + V Sbjct: 366 SDRLGTADLW-LHDLGTGTDTVLTQLAGAQVAPRWSPDGGRVAYADQDGATWIHDVASNS 424 Query: 380 GSQ--ERLLVEDSNLQAPTWSPSGRSLIFS-------RKKDGDTGSKLYSIDL 423 Q L + PTWSP G L + R ++G S++ ++DL Sbjct: 425 AQQVTPPLFMPGR----PTWSPDGSVLALAAVKPYSKRYREGT--SQILTVDL 471 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 12/181 (6%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPS-RDQILFEPRFSPNQQKVAYATYDDEDIL 237 +++ +V+GI V+ G R LT +D L P +SP+ +++ + +Y D + Sbjct: 51 WIAVDLVTGI-----WVLPAGGGRARRLTDDLQDATL--PTWSPDGRRLVFQSYRDGN-F 102 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +Y++D P+++ R P FS +G + S +D + I+ +DL S A + Sbjct: 103 HLYVIDA-AGGTPRKLTEGRFDHREPVFSPDGTKLAFSSDRDGSYGIHLLDLASGAISTV 161 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 +T S +S D ++IVF + + V + G+ + ++ + P + P Sbjct: 162 VSTPDEEASPRWSADGTKIVFTVNDTAID--VVTLATGARTRLVTATGADKLYGPAFGPG 219 Query: 358 G 358 G Sbjct: 220 G 220 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMD--TRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 +P F P+ K+ Y T D ++L D T D ++ + +APR+S +G R Sbjct: 352 DPDFHPDGTKLLY-TSDRLGTADLWLHDLGTGTDTVLTQLAGAQ---VAPRWSPDGGRVA 407 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-------DREGKE 326 + Q D A I+ D+ SN+ +++T LF+ ++SPD S + + REG Sbjct: 408 YADQ-DGATWIH--DVASNSAQQVTPPLFMPGRPTWSPDGSVLALAAVKPYSKRYREGTS 464 Query: 327 QLYVMQSNGSDQKRISQDKEASYF------DPVWSPQGDLIAFT 364 Q+ + + + R ++ F P+WSP G +AFT Sbjct: 465 QILTVDLK-THELRYAEPMPFRSFATRGDDGPLWSPDGRYLAFT 507 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRS 403 +E + SP G IA +G I V+ G + R L +D + PTWSP GR Sbjct: 36 REGTNLSAALSPDGRWIAVDLVTG----IWVLPAGGGRARRLTDDLQDATLPTWSPDGRR 91 Query: 404 LIFSRKKDGDTGSKLYSIDLNG 425 L+F +DG+ LY ID G Sbjct: 92 LVFQSYRDGNF--HLYVIDAAG 111 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 30/165 (18%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P F +G + L + + D++ DL + LT ++ +SPD ++ + +D+ Sbjct: 353 PDFHPDGTKLLYTSDRLGTADLWLHDLGTGTDTVLTQLAGAQVAPRWSPDGGRVAY-ADQ 411 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDG 380 +G ++ + SN + Q P WSP G ++A K +++ ++G Sbjct: 412 DGATWIHDVASNSAQQVTPPLFMPGR---PTWSPDGSVLALAAVKPYSKRY------REG 462 Query: 381 SQERLLVEDSNLQ------------------APTWSPSGRSLIFS 407 + + L V+ + P WSP GR L F+ Sbjct: 463 TSQILTVDLKTHELRYAEPMPFRSFATRGDDGPLWSPDGRYLAFT 507 >gi|110637833|ref|YP_678040.1| tol biopolymer transport system, periplasmic protein [Cytophaga hutchinsonii ATCC 33406] gi|110280514|gb|ABG58700.1| tol biopolymer transport system, periplasmic protein [Cytophaga hutchinsonii ATCC 33406] Length = 313 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 13/158 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G +++ DIY++ +RLT+ ++ Y+ D + I F S R G Sbjct: 154 WSPDGNTLAYCAERNGEFDIYTIPANGGTEQRLTDAAGLDDGPDYTADGTYIYFNSVRTG 213 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVM 376 K +++ M+ +GS+Q++++ D +F SP G I F + E + +M Sbjct: 214 KMKIWRMKPDGSEQEQVTFDDYNDWFAHP-SPDGKYIVFVSYEPEVEGHPANKNVTLRLM 272 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKK 410 G + R++ + + P+WSP + F K Sbjct: 273 PMQGGEPRVIAKLFGGQGTINVPSWSPDSKRFAFVSYK 310 >gi|307295800|ref|ZP_07575633.1| amidohydrolase [Sphingobium chlorophenolicum L-1] gi|306878456|gb|EFN09677.1| amidohydrolase [Sphingobium chlorophenolicum L-1] Length = 992 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +RI ++ + P +S +G R +D D++++ + +LT + + ++S Sbjct: 82 RRITDYFNDARQPVWSPDGSRLAYFAYRDGGYDLWTIRPDGSDMRKLTGGAWDDREPTWS 141 Query: 311 PDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD I F SDR G ++ + ++G+ ++R S +E P WSP G IA+ G Sbjct: 142 PDGRTIAFSSDRSGNYDIWTLDVASGAVKQRSSNPREDRM--PSWSPDGASIAYAGIDGG 199 Query: 370 KFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGR 402 K A+ +E LL + + + AP++ P+G+ Sbjct: 200 KTALYATSLADGKESLLKQVAGRIDAPSYGPAGQ 233 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I+ P S +G R A +++ D+Y + + E LT ++ ++SPD I + Sbjct: 321 IVHPTISPDGSRIAFVALG-----DLYLMSSKGGTPENLTKDAALDADPAWSPDGQSIAY 375 Query: 319 ESDREGK-EQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 SD+ G QL++ +G D+K S D + WSP G IAF G GV Sbjct: 376 TSDKGGGLPQLWIRDLKSGKDRKLTSIDTQP--LGAAWSPDGRRIAFLDVDGRWGVAGVC 433 Query: 377 KKD---GSQERLLVEDSNLQAPTWSPSGR--SLIFSRKKDG---DTGSKLYSIDLNGRNE 428 D G RL +PTWSP G+ ++ S K + +++Y I +G+ E Sbjct: 434 VVDVATGKITRLQSSLGQPGSPTWSPDGKYVAIALSYKYSNSFREGTNQVYVIPADGKGE 493 Query: 429 TLINTP 434 P Sbjct: 494 PFWQIP 499 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 35/199 (17%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +A S +GK + +Q ++ + + R+T+ +SPD S++ + + Sbjct: 52 MAVSVSPDGKWLAVDLQGS----LWIIPAKGGKARRITDYFNDARQPVWSPDGSRLAYFA 107 Query: 321 DREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGEKFAI--- 373 R+G L+ ++ +GSD ++++ D+E P WSP G IAF+ + I Sbjct: 108 YRDGGYDLWTIRPDGSDMRKLTGGAWDDRE-----PTWSPDGRTIAFSSDRSGNYDIWTL 162 Query: 374 ----GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 G +K+ S R ED + P+WSP G S+ ++ G T LY+ L E+ Sbjct: 163 DVASGAVKQRSSNPR---ED---RMPSWSPDGASIAYAGIDGGKT--ALYATSLADGKES 214 Query: 430 L-------INTPAYASDPQ 441 L I+ P+Y Q Sbjct: 215 LLKQVAGRIDAPSYGPAGQ 233 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 14/115 (12%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD----PVWSPQGD 359 +++ S SPD + D +G L+++ + G +RI+ YF+ PVWSP G Sbjct: 51 SMAVSVSPDGKWLAV--DLQG--SLWIIPAKGGKARRITD-----YFNDARQPVWSPDGS 101 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGD 413 +A+ + + + ++ DGS R L + + + PTWSP GR++ FS + G+ Sbjct: 102 RLAYFAYRDGGYDLWTIRPDGSDMRKLTGGAWDDREPTWSPDGRTIAFSSDRSGN 156 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 27/201 (13%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATYD 232 SRI FV+ L +M G LT +D L +P +SP+ Q +AY + Sbjct: 330 GSRIAFVA--------LGDLYLMSSKGGTPENLT--KDAALDADPAWSPDGQSIAYTSDK 379 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAM-DIYSVDLQ 290 + ++++ D + + +++ + + L +S +G+R A + V + + VD+ Sbjct: 380 GGGLPQLWIRDLKSGKD-RKLTSIDTQPLGAAWSPDGRRIAFLDVDGRWGVAGVCVVDVA 438 Query: 291 SNATERLTNTLFINISASYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQK--RI 341 + RL ++L S ++SPD + S REG Q+YV+ ++G + +I Sbjct: 439 TGKITRLQSSLGQPGSPTWSPDGKYVAIALSYKYSNSFREGTNQVYVIPADGKGEPFWQI 498 Query: 342 SQDKEAS----YFDPVWSPQG 358 Q + P WSP G Sbjct: 499 PQANAGTDTRGGGGPAWSPDG 519 >gi|94971260|ref|YP_593308.1| transcriptional regulatory protein-like [Candidatus Koribacter versatilis Ellin345] gi|94553310|gb|ABF43234.1| transcriptional regulatory protein-like protein [Candidatus Koribacter versatilis Ellin345] Length = 469 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N +SPD ++ F S+R G +++ ++GSD ++ +A P WSP G IAF Sbjct: 218 NEGPQFSPDGKRLTFMSNRNGATDVWIANASGSDPHPLTTLGDAG--TPRWSPDGQTIAF 275 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDG 412 + AI + DG R+L+ DSN P+WS G + F+ + G Sbjct: 276 DSHIHKYSAILTIPADGGAPRVLIAGDSNNSVPSWSKDGHFIYFASDRTG 325 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 5/150 (3%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P+FS +GKR ++ A D++ + + LT TL + +SPD I F+S Sbjct: 220 GPQFSPDGKRLTFMSNRNGATDVWIANASGSDPHPLT-TLGDAGTPRWSPDGQTIAFDSH 278 Query: 322 REGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + + ++G + I+ D S P WS G I F +F + + G Sbjct: 279 IHKYSAILTIPADGGAPRVLIAGDSNNSV--PSWSKDGHFIYFASDRTGRFEVWRVPTTG 336 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + + +D AP S G+ L +++ + Sbjct: 337 GPAQQITQDGGF-APVESADGKLLFYAKNQ 365 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 5/153 (3%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PR+S +G+ + I ++ A L N S+S D I F SDR Sbjct: 264 PRWSPDGQTIAFDSHIHKYSAILTIPADGGAPRVLIAGDSNNSVPSWSKDGHFIYFASDR 323 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIGVMKKDG 380 G+ +++ + + G ++I+QD F PV S G L+ + K F + ++ G Sbjct: 324 TGRFEVWRVPTTGGPAQQITQD---GGFAPVESADGKLLFYAKNQFPNPEVWEVSLEGGG 380 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 + L + TW+ +G S+ + + G+ Sbjct: 381 VEAPLRPIIRPVTWATWAVAGDSVFYVEEGPGN 413 >gi|262194812|ref|YP_003266021.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] gi|262078159|gb|ACY14128.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] Length = 969 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 22/248 (8%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 A++R+ + + + + R + N Q++A+ D D V AP + + Sbjct: 670 AHLRFSSDGKHMVYADIRSASNLQRIAF----DPDAGAVV-------GAPTWVTGGSLDL 718 Query: 261 LAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 AP S +G+ ++V DEA D+ + + + RLT+ ++ + + ++PD S+I F Sbjct: 719 NAPDVSPDGEWLAMTV-TDEANREDLLVMRVDGSERRRLTDDVYNDRTPRWAPDGSRIAF 777 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR GK +L+ + +G+ ++++ S + PVWSP G + + S + I + Sbjct: 778 YSDRSGKYELWAVDPHGNRLEQLTFTTGDSVYYPVWSPDGSRVLVQQRSDGSYVIDAEQP 837 Query: 379 DGSQ--ERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL----I 431 +Q ERL VED+ +WS G L + G Y+ G E L + Sbjct: 838 WEAQTPERLADVEDTWFTGWSWSSDGDRLAGAVHIGDRHGLGTYTFS-TGAYEILSDAEM 896 Query: 432 NTPAYASD 439 +TP + +D Sbjct: 897 DTPLWLAD 904 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 10/140 (7%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S PD+ ++F G +Y + GS+ ++ D +PV SP G IAF + + Sbjct: 444 SLGPDARWVIFAGRDGGDWDIYYQRIGGSNAFNLTADSAYDDTEPVLSPDGAHIAF-RST 502 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDL 423 E I VM+ G R +V++ P+WSP GRSL ++ + + + +L++IDL Sbjct: 503 REGGGIYVMEVTGESVRRVVDEG--ANPSWSPDGRSLAYATRSTLLPNSRSPGELWTIDL 560 Query: 424 -NGRNETLINTPAYASDPQW 442 +GR + + A A+ P W Sbjct: 561 ASGRRRRVAD--ADATQPAW 578 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 19/173 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQIVFESD 321 P + + + + + DIY + SNA ++ + + SPD + I F S Sbjct: 443 PSLGPDARWVIFAGRDGGDWDIYYQRIGGSNAFNLTADSAYDDTEPVLSPDGAHIAFRST 502 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---------GEKFA 372 REG +YVM+ G +R+ + +P WSP G +A+ S GE + Sbjct: 503 REGG-GIYVMEVTGESVRRVVDEGA----NPSWSPDGRSLAYATRSTLLPNSRSPGELWT 557 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I + S R V D++ P WSP G + + +G + ++++ G Sbjct: 558 IDL----ASGRRRRVADADATQPAWSPGGHRIAYWGLPEGGSQRDIWTVSAEG 606 >gi|332883941|gb|EGK04221.1| hypothetical protein HMPREF9456_01249 [Dysgonomonas mossii DSM 22836] Length = 292 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 15/161 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK ++ MD+Y++++ RLT + +N Y+P I F S R G Sbjct: 126 WSPDGKSLTYCANREGEMDVYTININGTNETRLTFSEGLNDGPEYTPKGKYIWFNSVRTG 185 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP-----------QGDLIAFTKFSGEKFAI 373 QL+ M+++GS+Q +++ D++ + + P SP +GDL + I Sbjct: 186 LMQLWRMKTDGSEQTQMTFDEDRNSWFPHISPDGKHVVYIAYKKGDLEPHEHLRYKNVEI 245 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKK 410 +M G + + L++ +WSP + + R K Sbjct: 246 RIMSATGGKPQTLIKLFGGQGTFNVNSWSPDSKCFAYVRYK 286 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD + + ++REG+ +Y + NG+++ R++ E P ++P+G I F Sbjct: 125 GWSPDGKSLTYCANREGEMDVYTININGTNETRLTFS-EGLNDGPEYTPKGKYIWFNSVR 183 Query: 368 GEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGD 413 + MK DGS++ + ED N P SP G+ +++ K GD Sbjct: 184 TGLMQLWRMKTDGSEQTQMTFDEDRNSWFPHISPDGKHVVYIAYKKGD 231 Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 351 DPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 D + SP G +A + S + + ++ +G R + + WSP G+SL + Sbjct: 78 DHLVSPDGKRLAVSHRSLPQGRPTVFILPAEGGTPRQVTPSAPSYLHGWSPDGKSLTYCA 137 Query: 409 KKDGDTGSKLYSIDLNGRNET-------LINTPAYASDPQWVGF 445 ++G+ +Y+I++NG NET L + P Y +++ F Sbjct: 138 NREGEM--DVYTININGTNETRLTFSEGLNDGPEYTPKGKYIWF 179 >gi|332534941|ref|ZP_08410760.1| hypothetical protein PH505_bx00100 [Pseudoalteromonas haloplanktis ANT/505] gi|332035614|gb|EGI72105.1| hypothetical protein PH505_bx00100 [Pseudoalteromonas haloplanktis ANT/505] Length = 1059 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + +LT+ + + +SP+ I F SD+ G + +++M NG +Q ++ Sbjct: 70 DIYTMPMSGGTATKLTSDIAWQMQPRFSPNGKSIAFTSDQGGGDNIWIMDLNGENQHAVT 129 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSN----LQ 393 + P WSP GD L+A F+ + + + K G + L + N L Sbjct: 130 DETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLG 189 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS Sbjct: 190 EPMFSPDGRYVYFSH 204 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PRFS NGK + + +I+ +DL +T+ F + S ++SPD +V Sbjct: 92 MQPRFSPNGKSIAFTSDQGGGDNIWIMDLNGENQHAVTDETFRLLNSPAWSPDGDYLVAR 151 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS--GEK 370 F + R G ++++ G +++ ++ + +P++SP G + F+ + G+ Sbjct: 152 KHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKT 211 Query: 371 F------AIGVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K + G E ++ PT SP G+ L + ++ D T L Sbjct: 212 FHYSKDSVAGIYKIKRYDRETGEIETIIDTMGGAIRPTPSPDGKKLAYIKRDDFQTSLYL 271 Query: 419 YSI 421 Y + Sbjct: 272 YDL 274 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGD 413 SP G + F I M G L D Q P +SP+G+S+ F+ + G Sbjct: 57 SPDGKTVVFDLLG----DIYTMPMSGGTATKLTSDIAWQMQPRFSPNGKSIAFTSDQGG- 111 Query: 414 TGSKLYSIDLNGRNET--------LINTPAYASD 439 G ++ +DLNG N+ L+N+PA++ D Sbjct: 112 -GDNIWIMDLNGENQHAVTDETFRLLNSPAWSPD 144 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 46/254 (18%) Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA---PKRI 253 D + I+ LT D P++S + +K+ Y T+DD V ++ R R K Sbjct: 387 DLESGKIKRLTKQTDHYELFPQYSRDGKKIVYTTWDDNKQGSVRVVSARSGRGDTVTKEP 446 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAM---------DIYSVDLQSNATERLTNTLFIN 304 G + + P FS +GK + ++ +YSV + +E ++ + Sbjct: 447 GKY----VEPTFSPDGKTVVYRKATGGSILNPKWSLNPGVYSVSAKGGKSELISKS---- 498 Query: 305 ISASYSP---DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 Y P D++ VF K L V++ +++ + + A+ F SP G + Sbjct: 499 ---GYQPQFGDANDRVFIMSPWPKPTLSVVELESKKVRKLYESEHATEFRV--SPDGQYL 553 Query: 362 AF--------TKF--SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 AF T F SG+ IG E+L V + +WS L ++ Sbjct: 554 AFAERFKVFVTPFVQSGKTINIGPKDSQFPIEQLSVRAG--ENISWSAKSNKLYWT---- 607 Query: 412 GDTGSKLYSIDLNG 425 G +LY L G Sbjct: 608 --LGPELYHASLEG 619 >gi|332827955|gb|EGK00677.1| hypothetical protein HMPREF9455_02951 [Dysgonomonas gadei ATCC BAA-286] Length = 291 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 15/157 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK ++ MD+Y++ + RLT + +N YSPD I F S R G Sbjct: 128 WSPDGKMLTYCANRNGEMDVYTISIDGTNETRLTTSEGLNDGPEYSPDGKYIWFNSVRTG 187 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP-----------QGDLIAFTKFSGEKFAI 373 Q++ M+++GS+Q +I+ D +++ + P SP +GDL + I Sbjct: 188 LMQIWRMKTDGSEQTQITFDDDSNSWFPHLSPDGKNVVYIAYRKGDLEPHEHLRYKHVEI 247 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 ++ G + + LV+ +W+P + F Sbjct: 248 RMIPATGGEPQTLVKLFGGQGTFNVNSWAPDSKRFAF 284 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD + + ++R G+ +Y + +G+++ R++ E P +SP G I F Sbjct: 127 GWSPDGKMLTYCANRNGEMDVYTISIDGTNETRLTT-SEGLNDGPEYSPDGKYIWFNSVR 185 Query: 368 GEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I MK DGS++ + +DSN P SP G+++++ + GD + L Sbjct: 186 TGLMQIWRMKTDGSEQTQITFDDDSNSWFPHLSPDGKNVVYIAYRKGDLEPHEH---LRY 242 Query: 426 RNETLINTPAYASDPQ 441 ++ + PA +PQ Sbjct: 243 KHVEIRMIPATGGEPQ 258 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 11/100 (11%) Query: 355 SPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G L+A + S + I V+ +G + + + WSP G+ L + ++G Sbjct: 84 SPDGRLMAISHRSLPDGRPTIFVLPDEGGEPKQVTPSLPSYMHGWSPDGKMLTYCANRNG 143 Query: 413 DTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 + +Y+I ++G NET + T P Y+ D +++ F Sbjct: 144 EM--DVYTISIDGTNETRLTTSEGLNDGPEYSPDGKYIWF 181 >gi|329896695|ref|ZP_08271688.1| amidohydrolase family protein [gamma proteobacterium IMCC3088] gi|328921631|gb|EGG29007.1| amidohydrolase family protein [gamma proteobacterium IMCC3088] Length = 1092 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V ++ +RLT TL + +SPD + + + SD G ++VM +++ I+ Sbjct: 83 DLYLVPIEGGEAQRLTTTLAQEVQPRFSPDGTSLTYISDANGGNNIFVMDLASKEERPIT 142 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK-FAIGVM---KKDGSQERLLVEDSNLQA--- 394 +K S +P W P G ++A F+G + G M DG L N Q Sbjct: 143 TEKFRSLTNPRWHPNGSGIVARKHFTGSRSLGSGEMWFYHLDGGSGVQLTTKRNEQQDEN 202 Query: 395 -PTWSPSGRSLIFSR 408 P +SP GR L +++ Sbjct: 203 DPVYSPDGRYLFYTQ 217 >gi|212632933|ref|YP_002309458.1| amidohydrolase:amidohydrolase-like protein [Shewanella piezotolerans WP3] gi|212554417|gb|ACJ26871.1| Amidohydrolase:Amidohydrolase-like protein [Shewanella piezotolerans WP3] Length = 1064 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 13/152 (8%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY + + L + + YSPD I F SD +G Sbjct: 58 SPNGKHIVF----DLLGDIYQISTDGGEAKPLAKGIAWQMQPVYSPDGKYIAFTSDEDGG 113 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDG 380 + +++M+++GS+ + ++ + P WSP G L+A ++G + + + G Sbjct: 114 DNIWIMEADGSNPRPVTTETFRLLNSPAWSPDGQYLVARKHYTGSRSLGAGEVWMYHVAG 173 Query: 381 SQERLLVEDSN----LQAPTWSPSGRSLIFSR 408 + L E N L P +SP GR + FS+ Sbjct: 174 GEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQ 205 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-----LTNTLFINISASYSPDSSQ 315 L P +++ I +E + V+ +NA + +T ++N+S S P+ Sbjct: 6 LTPLYAAIALSFSIPTLAEEDKKSWQVNAPANAPLQQVKIDVTEGTWMNVSVS--PNGKH 63 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 IVF D G +Y + ++G + K +++ A PV+SP G IAFT I + Sbjct: 64 IVF--DLLG--DIYQISTDGGEAKPLAKGI-AWQMQPVYSPDGKYIAFTSDEDGGDNIWI 118 Query: 376 MKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDG 412 M+ DGS R + ++ L +P WSP G+ L+ + G Sbjct: 119 MEADGSNPRPVTTETFRLLNSPAWSPDGQYLVARKHYTG 157 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 22/157 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD ++VFE+ GK ++V R+++ D E P WS G I FT Sbjct: 367 AQVSPDGKKVVFEA--LGK--IWVKSLPDGKMSRLTKLDSELRELFPQWSRDGKKIVFTT 422 Query: 366 FSGEKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG---------DT 414 + ++ + ++ + L E PT+SP G ++++ + K G +T Sbjct: 423 WDDQQQGTVSLATVRNKRVKVLTKEPGKYVEPTFSPDGETIVYRKAKGGYITPRTWSQET 482 Query: 415 GSKLYSIDLNGRNETLINT----PAYASDPQWVGFMD 447 G LY +D++G N I P + +D + V FM+ Sbjct: 483 G--LYQVDIDGDNNVKITASGYQPQFGADNERVYFME 517 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 59/282 (20%) Query: 208 PSRDQILFEPRFSPNQQKVAYAT---------YDDEDILRVYLMDTRIDRAPKRIGNFRS 258 P+ + L EP +SP+ + + ++ Y + + +Y +I R G+ Sbjct: 183 PNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIY----KIKRYDTETGDIEV 238 Query: 259 MI------LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTL---------- 301 +I + P S +GK+ L +++D +Y +DL+S TE+L L Sbjct: 239 LIQGTGGAIRPTPSPDGKK-LAYIKRDGFQSSLYLLDLKSGKTEKLYGELDRDMQETWAI 297 Query: 302 -FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--------------KRISQDKE 346 + + S++ D+ +IVF + +GK ++S Q R QD + Sbjct: 298 HGVYPTMSWTADNDEIVFWA--KGKINKLNVESKSVAQIPFSVKTERAVQPAVRFQQDLD 355 Query: 347 ASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWS 398 FD SP G + F K + + DG RL DS L+ P WS Sbjct: 356 KDVFDVKMLRMAQVSPDGKKVVFEALG--KIWVKSLP-DGKMSRLTKLDSELRELFPQWS 412 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G+ ++F+ D G+ + N R + L P +P Sbjct: 413 RDGKKIVFTTWDDQQQGTVSLATVRNKRVKVLTKEPGKYVEP 454 >gi|88859959|ref|ZP_01134598.1| hypothetical protein PTD2_18145 [Pseudoalteromonas tunicata D2] gi|88817953|gb|EAR27769.1| hypothetical protein PTD2_18145 [Pseudoalteromonas tunicata D2] Length = 1061 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ +LT+ + + +SPD I F SD +G + ++VM +G + K ++ Sbjct: 74 DIYTMPFSGGKATQLTSDIAWQMQPRFSPDGKSIAFTSDADGGDNIWVMDVDGQNAKAVT 133 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----VMKKDGSQERLLVEDSN----LQ 393 ++ P WSP GD I K ++G + K G L + N L Sbjct: 134 KETFRLLNSPAWSPDGDFIIARKHFTASRSLGAGEVWLYHKAGGNGVQLTKRENDQKDLG 193 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS Sbjct: 194 EPAFSPDGRYVYFSH 208 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 24/193 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PRFS +GK + D +I+ +D+ + +T F + S ++SPD I+ Sbjct: 96 MQPRFSPDGKSIAFTSDADGGDNIWVMDVDGQNAKAVTKETFRLLNSPAWSPDGDFIIAR 155 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS--GEK 370 F + R G ++++ G + +++ ++ + +P +SP G + F+ + G+ Sbjct: 156 KHFTASRSLGAGEVWLYHKAGGNGVQLTKRENDQKDLGEPAFSPDGRYVYFSHDATPGKT 215 Query: 371 FAI------GVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K + G E ++ PT SP G++L + ++ D S L Sbjct: 216 FHYSKDSVDGIYKIKRYDRQTGEIETIISGMGGAIRPTPSPDGKTLAYIKRDDFQ--SSL 273 Query: 419 YSIDLNGRNETLI 431 Y DL T + Sbjct: 274 YLYDLATGQHTKV 286 Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGD 413 SP G I F I M G + L D Q P +SP G+S+ F+ D D Sbjct: 61 SPDGKTIVFDLLG----DIYTMPFSGGKATQLTSDIAWQMQPRFSPDGKSIAFT--SDAD 114 Query: 414 TGSKLYSIDLNGRN------ET--LINTPAYASD 439 G ++ +D++G+N ET L+N+PA++ D Sbjct: 115 GGDNIWVMDVDGQNAKAVTKETFRLLNSPAWSPD 148 >gi|156743096|ref|YP_001433225.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] gi|156234424|gb|ABU59207.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] Length = 1090 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DI+ VD+ ERLT ++ +SPD S I + S R G+ +YV+ NG + +R Sbjct: 29 AGDIWLVDVSGGQAERLTAHPANHMLPRWSPDGSAIAYTSSRTGQGDVYVLPLNGGEVRR 88 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI--GVMKKDGSQERLLVED-SNLQAPTW 397 I+ + S + WSP G I FT + A + G+ R + + L Sbjct: 89 ITYHEAQSAVE-CWSPDGAAIYFTSQRERQGAAIYRIAASGGTPVRWIAQPYERLGTVAV 147 Query: 398 SPSGRSLIFSRKKD 411 SP GR L FS +D Sbjct: 148 SPCGRWLAFSLMRD 161 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 111/293 (37%), Gaps = 71/293 (24%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------T 230 I FVS+ S +L V R+G +T D L P S + + +A+ T Sbjct: 210 IFFVSDRDGS----ENLWVAPREGGVAERITAFTDGRLLWPSISADGRMIAFERDFGIWT 265 Query: 231 YD--DEDILRVYLM---DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ----KDEA 281 D RV + DT++ P R+ + S +GK+ +V+ D A Sbjct: 266 LDLASGATTRVPIQVRQDTKV--TPVRVQTYTRDAGELALSPDGKKVAFTVRGKIFADFA 323 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 D + R+++T F + ++SPDS ++V+ SDR G E++Y + R+ Sbjct: 324 EKETERDQRHGPAYRISHTAFRDSDIAWSPDSRRLVYVSDRHGDEEVYCYDFLARSETRL 383 Query: 342 S---QDKEASYFDP--------------------------------------VWSPQGDL 360 + + K A F P WSP Sbjct: 384 TFGAKRKSAPCFSPDGRWIAYASGDDEIRLIEVSSGEDRPFIRAYFVFGASFAWSPDSRW 443 Query: 361 IAFT----KFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFS 407 +AF +F + + ++ Q L SNLQA P WSP GR L+F+ Sbjct: 444 LAFCAQDERFFSNVYVQHIEEEQAHQISFL---SNLQAAGPLWSPDGRFLVFT 493 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 22/211 (10%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P P ++A+ D ++L+D +A +R+ + + PR+S +G + Sbjct: 15 PSIDPAGSRIAFVYAGD-----IWLVDVSGGQA-ERLTAHPANHMLPRWSPDGSAIAYTS 68 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSN 334 + D+Y + L R+T + +SPD + I F S RE G + S Sbjct: 69 SRTGQGDVYVLPLNGGEVRRITYHEAQSAVECWSPDGAAIYFTSQRERQGAAIYRIAASG 128 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ- 393 G+ + I+Q E V SP G +AF+ + G G++ L+ + Sbjct: 129 GTPVRWIAQPYERLGTVAV-SPCGRWLAFSLMRDLWWRRGPNPYGGAELWLVSNAPDADD 187 Query: 394 ------------APTWSPSGRSLIFSRKKDG 412 P WSP + + F +DG Sbjct: 188 FFQLSDAPGMNYCPMWSPDSQLIFFVSDRDG 218 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Query: 289 LQSNATE-----RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 L SNA + +L++ +N +SPDS I F SDR+G E L+V G +RI+ Sbjct: 178 LVSNAPDADDFFQLSDAPGMNYCPMWSPDSQLIFFVSDRDGSENLWVAPREGGVAERITA 237 Query: 344 DKEASYFDPVWSPQGDLIAFTK 365 + P S G +IAF + Sbjct: 238 FTDGRLLWPSISADGRMIAFER 259 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P P G IAF ++G+ + + V G ERL +N P WSP G ++ ++ + Sbjct: 15 PSIDPAGSRIAFV-YAGDIWLVDV--SGGQAERLTAHPANHMLPRWSPDGSAIAYTSSRT 71 Query: 412 GDTGSKLYSIDLNG 425 G +Y + LNG Sbjct: 72 GQ--GDVYVLPLNG 83 >gi|221212545|ref|ZP_03585522.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1] gi|221167644|gb|EEE00114.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1] Length = 640 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 44/227 (19%) Query: 265 FSSNGKRALISVQKDE--AMDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIVFESD 321 FS +GK + + ++D +Y V + +RLT+ ++ +A Y P D I F S Sbjct: 75 FSPDGKWVVFTSERDGLGHASLYRVRIDGTGLQRLTDWTGVSDAAVYDPADPDVIAFVSS 134 Query: 322 RE-----GKEQLYVMQ------SNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----TK 365 R G ++ + N + R DK S+F P WSP G IAF T+ Sbjct: 135 RRDNDTWGTTNIWTLNLKTGALHNVTGDIRFDPDKPHSFFRPSWSPDGKWIAFSSDLGTE 194 Query: 366 FSGEKFAIGV----------MKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSR----- 408 + G +G ++ DG+ R + + +P+WS G+ ++F Sbjct: 195 WRGHNLPVGWERTQETAIYEIRPDGTGFRQIAARAGYADGSPSWSNDGKQIVFYETPVES 254 Query: 409 -------KKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVGFMD 447 + G S++ +D+ G + L +TP + PQ+VG D Sbjct: 255 TWGAHRPEAIGKVSSQIVQVDVATGVRKQLTDTPGFKVFPQYVGATD 301 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 47/217 (21%) Query: 258 SMILAPRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S I +PR+S++GK+ + M +Y D Q N F+++ S Sbjct: 327 SGIRSPRYSADGKKVVYEKVVYSKPFHPNGMPLYRFDPQ-------WNYRFVDVFPQLSR 379 Query: 312 D------------SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 D SS +V ++D +Y ++G D K ++ A F P WSP Sbjct: 380 DGKSLVYTEKAVGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGL-AGAFQPTWSPDKQ 438 Query: 360 LIAFTKFSGEKF--------AIGVMKKDGSQ----ERLLVEDSNLQAPTWSPSGRSLIFS 407 + F G F I ++ DGS E L N P++SP G +++ Sbjct: 439 WVVFG--VGSWFFTRAHMPGRIARIRADGSMNGKPEILTDGKENAGFPSYSPDGTRIVYR 496 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINT-----PAYASD 439 + D G ++ +DLN R ++ T P ++ D Sbjct: 497 VWSETDKGLRI--LDLNTRKTMVLTTEPDNLPGWSPD 531 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%) Query: 189 IKNSLCVMDRDGANIRYL----TPSRDQIL--------FEPRFSPNQQKVAYATYDDEDI 236 + +S+ V D D ++ R++ T D L F+P +SP++Q V + Sbjct: 391 VGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGLAGAFQPTWSPDKQWVVFGV-GSWFF 449 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R ++ P RI R+ S NGK +++ K+ A Sbjct: 450 TRAHM--------PGRIARIRA-----DGSMNGKPEILTDGKENAG-------------- 482 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 SYSPD ++IV+ E + L ++ N ++ + + P WSP Sbjct: 483 ---------FPSYSPDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEPDNL---PGWSP 530 Query: 357 QGDLIAFTKFS-----GEKFAIGV--MKKDGSQ-ERLLVEDSNLQAPTWSPSGR 402 G I FT+ KF V +K DG+ RL +N TW+ GR Sbjct: 531 DGTRIVFTRKEVNPNDANKFHFDVYTIKPDGTDVRRLTPPGANQAHATWTWDGR 584 >gi|325919579|ref|ZP_08181591.1| amidohydrolase, imidazolonepropionase [Xanthomonas gardneri ATCC 19865] gi|325549915|gb|EGD20757.1| amidohydrolase, imidazolonepropionase [Xanthomonas gardneri ATCC 19865] Length = 1110 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y++D + ++ L + ++SPD I F SDR G E L+ M+ +G D ++++ Sbjct: 98 DLYTLDADGGRAKAISRGLGFDSQPTFSPDGRWIAFVSDRSGAENLWRMRPDGRDAQQLT 157 Query: 343 -QDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLV---------EDS 390 D + P W+P G + ++F S + + D S ERL+ E S Sbjct: 158 FGDDDTVLVSPAWAPDGSALYASRFRWSVNDYELWRYGLDCS-ERLVAPVRAEGAGSEQS 216 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGS---KLYSI---DL-NGRNETLINTPA 435 L A SP GR L ++ ++ GD S +L+SI DL G+ ET++ P Sbjct: 217 TLGAVV-SPDGRQL-YAARRSGDKDSAELELWSIVRRDLATGKEETILPVPG 266 >gi|221196873|ref|ZP_03569920.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M] gi|221203543|ref|ZP_03576562.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2] gi|221177477|gb|EEE09905.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2] gi|221183427|gb|EEE15827.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M] Length = 640 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 44/227 (19%) Query: 265 FSSNGKRALISVQKDE--AMDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIVFESD 321 FS +GK + + ++D +Y V + +RLT+ ++ +A Y P D I F S Sbjct: 75 FSPDGKWVVFTSERDGLGHASLYRVRIDGTGLQRLTDWTGVSDAAVYDPADPDVIAFVSS 134 Query: 322 RE-----GKEQLYVMQ------SNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----TK 365 R G ++ + N + R DK S+F P WSP G IAF T+ Sbjct: 135 RRDNDTWGTTNIWTLNLKTGALHNVTGDIRFDPDKPHSFFRPSWSPDGKWIAFSSDLGTE 194 Query: 366 FSGEKFAIGV----------MKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSR----- 408 + G +G ++ DG+ R + + +P+WS G+ ++F Sbjct: 195 WRGHNLPVGWERTQETAIYEIRPDGTGFRQIAARAGYADGSPSWSNDGKQIVFYETPVES 254 Query: 409 -------KKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVGFMD 447 + G S++ +D+ G + L +TP + PQ+VG D Sbjct: 255 TWGAHRPEAIGKVSSQIVQVDVATGVRKQLTDTPGFKVFPQYVGATD 301 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 47/217 (21%) Query: 258 SMILAPRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S I +PR+S++GK+ + M +Y D Q N F+++ S Sbjct: 327 SGIRSPRYSADGKKVVYEKVVYSKPFHPNGMPLYRFDPQ-------WNYRFVDVFPQLSR 379 Query: 312 D------------SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 D SS +V ++D +Y ++G D K ++ A F P WSP Sbjct: 380 DGKSLVYTEKAVGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGL-AGAFQPTWSPDKQ 438 Query: 360 LIAFTKFSGEKF--------AIGVMKKDGSQ----ERLLVEDSNLQAPTWSPSGRSLIFS 407 +AF G F I ++ DGS E L N P++SP G +++ Sbjct: 439 WVAFG--VGSWFFTRAHMPGRIARIRADGSMNGKPEILTDGKENAGFPSYSPDGTRIVYR 496 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINT-----PAYASD 439 + D G ++ +DLN R ++ T P ++ D Sbjct: 497 VWSETDKGLRI--LDLNTRKTMVLTTEPDNLPGWSPD 531 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 60/234 (25%) Query: 189 IKNSLCVMDRDGANIRYL----TPSRDQIL--------FEPRFSPNQQKVAYATYDDEDI 236 + +S+ V D D ++ R++ T D L F+P +SP++Q VA+ Sbjct: 391 VGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGLAGAFQPTWSPDKQWVAFGV-GSWFF 449 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R ++ P RI R+ S NGK +++ K+ A Sbjct: 450 TRAHM--------PGRIARIRA-----DGSMNGKPEILTDGKENAG-------------- 482 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 SYSPD ++IV+ E + L ++ N ++ + + P WSP Sbjct: 483 ---------FPSYSPDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEPDNL---PGWSP 530 Query: 357 QGDLIAFTKFS-----GEKFAIGV--MKKDGSQ-ERLLVEDSNLQAPTWSPSGR 402 G I FT+ KF V +K DG+ RL +N TW+ GR Sbjct: 531 DGTRIVFTRKEVNPNDANKFHFDVYTIKPDGTDVRRLTPPGANQAHATWTWDGR 584 >gi|241204940|ref|YP_002976036.1| WD40 domain protein beta Propeller [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858830|gb|ACS56497.1| WD40 domain protein beta Propeller [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G++ +D+ DIY++ + A RLT+ N YS D I F S R G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D ++F SP D++ + F + +M Sbjct: 176 LMQIWRVHPDGTGLQQVTSDDYGNWFAHP-SPNNDMVLLLSYDPSVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG + L E + P WSP G + R Sbjct: 235 DMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVR 270 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 37/187 (19%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+++ ++ +G R +T + + +SP+ +++AY D D+ +Y + A Sbjct: 89 KSAIYILPIEGGTPRLITENLPS--YWHGWSPDGRQLAYCGIRD-DLFDIYTISVD-GGA 144 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 R+ + P +S++G+ + + M I+ V +++T+ + N A Sbjct: 145 ETRLTHGEGRNDGPDYSADGQWIYFNSSRTGLMQIWRVHPDGTGLQQVTSDDYGNWFAHP 204 Query: 310 SPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGD 359 SP++ + VF+ R+ +L +M +G + K + + + + P WSP G+ Sbjct: 205 SPNNDMVLLLSYDPSVFDHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGE 264 Query: 360 LIAFTKF 366 A+ ++ Sbjct: 265 EFAYVRY 271 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAF- 363 + ++SPD S ++ D LY + +G + ++ + D SP G I Sbjct: 27 APNFSPDGSYLLLNGD----GLLYRLPLDGGEVVKVDTGFAVNCNNDHGISPNGSEIVIS 82 Query: 364 --TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 T+F K AI ++ +G RL+ E+ WSP GR L + + D +Y+I Sbjct: 83 DKTEFG--KSAIYILPIEGGTPRLITENLPSYWHGWSPDGRQLAYCGIR--DDLFDIYTI 138 Query: 422 DLNGRNETLI-------NTPAYASDPQWVGF 445 ++G ET + + P Y++D QW+ F Sbjct: 139 SVDGGAETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|163751698|ref|ZP_02158917.1| hypothetical amidohydrolase [Shewanella benthica KT99] gi|161328437|gb|EDP99593.1| hypothetical amidohydrolase [Shewanella benthica KT99] Length = 1058 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY + +Q + L + + +YSPD I F SD G Sbjct: 41 SPNGKTIVF----DMLGDIYQIPMQGGEAKVLAKGIAWQMQPTYSPDGKYIAFTSDENGG 96 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMK 377 + +++M ++GS+ + ++ + P WSP + K +GE + V Sbjct: 97 DNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEVWLYHVAG 156 Query: 378 KDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSR 408 +G + ER E+ +L P +SP GR + FS+ Sbjct: 157 GEGIKLTER-PNEEKDLGEPAYSPDGRYIYFSQ 188 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 20/157 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD +++V+E+ GK + + + R++ D + P WS I FT Sbjct: 350 AQVSPDGNKVVYEA--LGKLWVKSLSNKSDKHSRLTNLDADLRELYPQWSRDSRSIVFTT 407 Query: 366 FSGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG---------DT 414 + + + + V++ ++ + L E PT+SP G +++ + K G DT Sbjct: 408 WDDQDQGTVKVIRVRNKRIKTLTKEPGKYVEPTFSPDGSFVVYRKTKGGYITPKTWSQDT 467 Query: 415 GSKLYSIDLNGRNETLIN----TPAYASDPQWVGFMD 447 G LY +D+ G+ T I P + +D Q V FMD Sbjct: 468 G--LYKVDIKGKQNTRITPDGYQPQFGADSQRVYFMD 502 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 28/162 (17%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++NIS S P+ IVF D G +Y + G + K +++ A P +SP G I Sbjct: 35 WMNISVS--PNGKTIVF--DMLG--DIYQIPMQGGEAKVLAKGI-AWQMQPTYSPDGKYI 87 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDGDTGSK-- 417 AFT I +M DGS R + +++ L +P WSP + L+ + TGS+ Sbjct: 88 AFTSDENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHY---TGSRSL 144 Query: 418 ------LY------SIDLNGR--NETLINTPAYASDPQWVGF 445 LY I L R E + PAY+ D +++ F Sbjct: 145 GAGEVWLYHVAGGEGIKLTERPNEEKDLGEPAYSPDGRYIYF 186 Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 16/133 (12%) Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+E K Q+ + +Q +I E ++ + SP G I F G+ + I + Sbjct: 7 SDKEPKWQVNAPANAPFEQVKIDV-SEGTWMNISVSPNGKTIVFDML-GDIYQIPMQ--- 61 Query: 380 GSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN------ET--L 430 G + ++L + Q PT+SP G+ + F+ ++G G ++ +D +G N ET L Sbjct: 62 GGEAKVLAKGIAWQMQPTYSPDGKYIAFTSDENG--GDNIWIMDADGSNPRAVTDETFRL 119 Query: 431 INTPAYASDPQWV 443 +N+PA++ D Q++ Sbjct: 120 LNSPAWSPDSQYL 132 Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust. Identities = 61/282 (21%), Positives = 112/282 (39%), Gaps = 57/282 (20%) Query: 208 PSRDQILFEPRFSPNQQKVAYAT---------YDDEDILRVYLMDTRIDRAPKRIGNFRS 258 P+ ++ L EP +SP+ + + ++ Y + + +Y +I R G+ Sbjct: 166 PNEEKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIY----KIKRYDTETGDIEV 221 Query: 259 MI------LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTL---------- 301 ++ + P S +G + L +++D +Y +DL+S E+L L Sbjct: 222 LVEGTGGAIRPTPSPDGTK-LAYIKRDGFQSSLYLLDLKSGKKEKLYGKLDRDMQETWAI 280 Query: 302 -FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--------------KRISQDKE 346 + + S++ D+ +IVF + GK ++S Q R QD + Sbjct: 281 HGVYPTMSWTADNQEIVFWAG--GKINKLDVESKSVKQIPFSVKTELTVQPAVRFEQDLD 338 Query: 347 ASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWS 398 FD SP G+ + + G+ + + K RL D++L+ P WS Sbjct: 339 KDVFDVKMLRMAQVSPDGNKVVYEAL-GKLWVKSLSNKSDKHSRLTNLDADLRELYPQWS 397 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 RS++F+ D D G+ N R +TL P +P Sbjct: 398 RDSRSIVFTTWDDQDQGTVKVIRVRNKRIKTLTKEPGKYVEP 439 >gi|134100530|ref|YP_001106191.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] gi|291004991|ref|ZP_06562964.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] gi|133913153|emb|CAM03266.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] Length = 1054 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 ++S+ + A RLT+ L +SPD S+IVF+S ++G L + +G R++ Sbjct: 52 LWSIPIGGGAAVRLTDVLQEAAEPDFSPDGSRIVFQSYQDGNFHLCLADRDGRGLTRLTS 111 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGR 402 +P +SP G +AF + ++ I V+ + S +A P W+P G Sbjct: 112 GP-TDQREPRFSPDGTRVAFAAETDGRYGIHVLTLATGEIAAWTSGSAQEAQPVWTPDGS 170 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 ++ F+ D DT + +D +G TL+ Sbjct: 171 AIAFTSSDD-DTPQAIDLVDAHGNRRTLVT 199 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +G R + +D + D RLT+ +SPD +++ F ++ Sbjct: 75 PDFSPDGSRIVFQSYQDGNFHLCLADRDGRGLTRLTSGPTDQREPRFSPDGTRVAFAAET 134 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGS 381 +G+ ++V+ + + + A PVW+P G IAFT + AI ++ G+ Sbjct: 135 DGRYGIHVL-TLATGEIAAWTSGSAQEAQPVWTPDGSAIAFTSSDDDTPQAIDLVDAHGN 193 Query: 382 QERLL-VEDSNLQAPTWSPSGRSLIFSRKKDG 412 + L+ V + ++ PT+SP GR R G Sbjct: 194 RRTLVTVSEGDIAGPTFSPDGRLGYVHRTPSG 225 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 2/149 (1%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 Q EP FSP+ ++ + +Y D + + L D R R R+ + + PRFS +G R Sbjct: 70 QEAAEPDFSPDGSRIVFQSYQDGN-FHLCLAD-RDGRGLTRLTSGPTDQREPRFSPDGTR 127 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + D I+ + L + T+ ++PD S I F S + Q + Sbjct: 128 VAFAAETDGRYGIHVLTLATGEIAAWTSGSAQEAQPVWTPDGSAIAFTSSDDDTPQAIDL 187 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ + E P +SP G L Sbjct: 188 VDAHGNRRTLVTVSEGDIAGPTFSPDGRL 216 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 54/254 (21%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-------ILAPRFSSN 268 +P ++P+ +A+ + DD+ + L+D GN R++ I P FS + Sbjct: 162 QPVWTPDGSAIAFTSSDDDTPQAIDLVDAH--------GNRRTLVTVSEGDIAGPTFSPD 213 Query: 269 GKRALIS-------------VQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSS 314 G+ + V DE D++ + + + L T I + S Sbjct: 214 GRLGYVHRTPSGTALVLDGKVVSDEGEDVFPFSARWLSADELLYTADGRIRRRALGGARS 273 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKR---ISQDKEA-SYFDPVWSPQGDLIAFTKFSGEK 370 I F + ++ V + + +R + D+ PV SP G +AF G+ Sbjct: 274 DIPFTA------EVSVREVSPPPTRRDFDSTADRAVKGIVGPVLSPDGTRVAFQAL-GDI 326 Query: 371 FAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG---------DTGSKLYS 420 + + +DG + +V D P WSP GR+L+++ + G +TG Sbjct: 327 WVV----RDGEEPEAVVSDGGYNTGPAWSPDGRTLVYAGDRAGTLDLWLHDLETGQDRRL 382 Query: 421 IDLNGRNETLINTP 434 DL G + +P Sbjct: 383 TDLEGDETGAVFSP 396 >gi|111221034|ref|YP_711828.1| putative serine/threonine protein kinase [Frankia alni ACN14a] gi|111148566|emb|CAJ60239.1| Putative serine/threonine protein kinase [Frankia alni ACN14a] Length = 770 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 263 PRFSSNGKRALISVQKDEAMD----IYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 P S +G+ ++ DE D +Y V L ++ RL T ++SPD +I + Sbjct: 577 PSLSPDGEFLVVRSSTDEKRDQNPGLYIVRLDGSSVRRL-KTKPQATDPAWSPDGERIAY 635 Query: 319 ESDREGKEQLYVM----QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 S+ G ++ +V+ + + Q I+ DK + DPVWSP GD IAFT+ I Sbjct: 636 WSNNAGGDRGFVVVISVEPDAVAQPVIN-DKLTTDSDPVWSPNGDKIAFTREQNGDLEIF 694 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 M DGS R L + Q P + P GR ++FS ++D Sbjct: 695 EMGSDGSDVRQLTHARGDDQDPAFGPDGR-IVFSGQRD 731 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 23/179 (12%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D P G+ ++++ + S N +A+ + + + +++ +N T + + Sbjct: 523 DMLPAISGDRKTVVFFKKGSPNTLQAIAADGTGKPVQLFTSGPAANLT------IANDAR 576 Query: 307 ASYSPDSSQIVFESD----REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S SPD +V S R+ LY+++ +GS +R+ +A+ DP WSP G+ IA Sbjct: 577 PSLSPDGEFLVVRSSTDEKRDQNPGLYIVRLDGSSVRRLKTKPQAT--DPAWSPDGERIA 634 Query: 363 F--TKFSGEKFAIGVM--KKDGSQERL----LVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 + G++ + V+ + D + + L DS+ P WSP+G + F+R+++GD Sbjct: 635 YWSNNAGGDRGFVVVISVEPDAVAQPVINDKLTTDSD---PVWSPNGDKIAFTREQNGD 690 >gi|295687564|ref|YP_003591257.1| amidohydrolase [Caulobacter segnis ATCC 21756] gi|295429467|gb|ADG08639.1| amidohydrolase [Caulobacter segnis ATCC 21756] Length = 1111 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 11/137 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + R+ L + +SPD +I F SDR G + ++VM +GSD+++++ Sbjct: 88 DIYTLPIAGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRAGGDNIWVMNVDGSDKRQVT 147 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIG---VMKKDGSQERLLVEDSN------ 391 +++ P WSP G I K +G G V G LV+ ++ Sbjct: 148 KEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEALQKE 207 Query: 392 LQAPTWSPSGRSLIFSR 408 L P ++ G+S+ ++R Sbjct: 208 LGEPIYAADGKSVFYTR 224 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 8/120 (6%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 AS SPD +VFE+ +L++ ++G + +R+ + + F+ P WS G + F Sbjct: 386 ASVSPDGKSVVFET----LGKLWIKPASGGEPRRLVTGGDEAAFELYPSWSRDGRTVVFV 441 Query: 365 KFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++ G V G+ + ++ + + AP +SP G++++F R++ G S +S D Sbjct: 442 SWTDAGLGRLRTVAASGGAAKDVIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSSRWSQD 501 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 32/209 (15%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-AS 308 P RI + PRFS +GKR + + +I+ +++ + ++T F ++ S Sbjct: 99 PTRIAEGLAYDQQPRFSPDGKRIAFTSDRAGGDNIWVMNVDGSDKRQVTKEEFRLLNQPS 158 Query: 309 YSPDSSQIV----FESDRE---GKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGD 359 +SPD IV F + R G+ +Y + G Q KR S+ + +P+++ G Sbjct: 159 WSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEALQKELGEPIYAADGK 218 Query: 360 LIAFTK--FSGEKFAIGVMKKDGSQERLLVEDSNLQA---------------PTWSPSGR 402 + +T+ G F +D + +E +L+ PT SP G Sbjct: 219 SVFYTRNVTPGPIFE---YAQDSNTALFDIERYDLETGEVTTAVSGLGGSVRPTPSPDGG 275 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + F R++ T SKLY DL E I Sbjct: 276 KIAFVRRE--RTKSKLYVKDLTSGEERKI 302 >gi|262383138|ref|ZP_06076275.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296016|gb|EEY83947.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 304 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 266 SSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S++GK+ IS ++D +Y++ + RL L + +SPD Q+ + ++R Sbjct: 98 SADGKQIAISNGTKEDGKSRVYTLPFEG-GVPRLITPLGPSYLHGWSPDGKQLAYCAERN 156 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +YV+ S G ++KR++ E P +SP G I F + MK DGS++ Sbjct: 157 GNFDVYVIPSLGGEEKRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 215 Query: 384 RLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + E N P SP G+ ++F GD + L +N L PA +P+ Sbjct: 216 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQH---LANKNVELRLMPAEGGEPK 272 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK+ +++ D+Y + +RLT ++ YSP I F S R G Sbjct: 142 WSPDGKQLAYCAERNGNFDVYVIPSLGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTG 201 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFA-----I 373 Q++ M+++GS+Q +++ D+ + + P SP G I F ++ G+ A + Sbjct: 202 LMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVEL 261 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 +M +G + + LV+ + +W+P + F Sbjct: 262 RLMPAEGGEPKTLVKLFGGQGTINVNSWAPDSKRFAF 298 >gi|163788836|ref|ZP_02183281.1| peptidase S41 [Flavobacteriales bacterium ALC-1] gi|159876073|gb|EDP70132.1| peptidase S41 [Flavobacteriales bacterium ALC-1] Length = 1090 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 15/187 (8%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESD 321 P S GKRA+ + +I++V ++ + +TN+ + + S +SP +I + SD Sbjct: 307 PNLSPKGKRAIF----EHRGEIFTVPKENGTWKNITNSPGVADRSPIWSPKGDKIAWFSD 362 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + G+ QL + +G + + I YF P WSP G IA +S + + ++ + Sbjct: 363 KGGEYQLMLADQDGQNAEAIKLPNPTFYFQPDWSPDGKYIA---YSDTHYNVWILNLETK 419 Query: 382 QERLLVED-----SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-A 435 + R + D + P WSP + + F +++D S +++ +++ + + P A Sbjct: 420 KTRKVATDRYAHPNRTMNPVWSPDSKWIAFPKQQDSHFKS-IFAYNVDSKKTIQLTDPIA 478 Query: 436 YASDPQW 442 A P W Sbjct: 479 DAITPVW 485 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ + RLT+ S +S D I F + +G ++VM S G + KR Sbjct: 39 ANDLWKASVNGGTAIRLTSDDGYESSPHFSNDGKMIAFTAQYDGNVDVFVMPSEGGEPKR 98 Query: 341 ISQDKEASYFDPVWSPQGDLI 361 ++ + W+P G+++ Sbjct: 99 LTYHPGGDFVQ-GWTPDGNVL 118 >gi|86357985|ref|YP_469877.1| putative periplasmic component of the Tol biopolymer transport system [Rhizobium etli CFN 42] gi|86282087|gb|ABC91150.1| putative periplasmic component of the Tol biopolymer transport system [Rhizobium etli CFN 42] Length = 275 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G++ +D+ DIY++ + A RLT+ N YS D I F S R G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D + ++F SP+ D + + F + +M Sbjct: 176 LMQIWRIHPDGTGLEQVTSDNQGNWFAHP-SPRNDKVLILSYDPSVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG + L E + P WSP G + R Sbjct: 235 DMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVR 270 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 29/221 (13%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H IS D + + +K +F K+++ ++ +G R +T R+Q + Sbjct: 70 HGISPDGTEIVISDKSEFG---------------KSAIYILPIEGGTPRLVT--RNQPSY 112 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +SP+ +++AY D D+ +Y + A R+ + P +S++G+ + Sbjct: 113 WHGWSPDGRQLAYCGIRD-DLFDIYTISVD-GGAETRLTHGEGRNDGPDYSADGQWIYFN 170 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI--------VFESDREGKEQ 327 + M I+ + E++T+ N A SP + ++ VF+ R+ + Sbjct: 171 SSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFAHPSPRNDKVLILSYDPSVFDHPRDLDVR 230 Query: 328 LYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKF 366 L +M +G + K + + + + P WSP G+ A+ ++ Sbjct: 231 LRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 15/149 (10%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFT 364 + ++SPD S ++ D L+ + +G + R+ + D SP G I + Sbjct: 27 APNFSPDGSYLLLNGD----GLLFRLPLDGGEVVRVDTGFAVNCNNDHGISPDGTEIVIS 82 Query: 365 -KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 K K AI ++ +G RL+ + WSP GR L + + D +Y+I + Sbjct: 83 DKSEFGKSAIYILPIEGGTPRLVTRNQPSYWHGWSPDGRQLAYCGIR--DDLFDIYTISV 140 Query: 424 NGRNETLI-------NTPAYASDPQWVGF 445 +G ET + + P Y++D QW+ F Sbjct: 141 DGGAETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|114798295|ref|YP_761023.1| amidohydrolase family protein [Hyphomonas neptunium ATCC 15444] gi|114738469|gb|ABI76594.1| amidohydrolase family protein [Hyphomonas neptunium ATCC 15444] Length = 1077 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + RLT+ + ++ +SPD ++F SDR G E L++M ++G + ++IS Sbjct: 84 DIYTLPVSGGKAARLTSGMAMDSQPVWSPDGKAVLFVSDRSGAENLWLMDADGGNPRQIS 143 Query: 343 -QDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 D + P W+P G I T++ ++ A Sbjct: 144 LYDDNPVFVSPEWAPDGKSILVTRYWADRNA 174 >gi|255035493|ref|YP_003086114.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254948249|gb|ACT92949.1| peptidase S9 prolyl oligopeptidase active site domain protein [Dyadobacter fermentans DSM 18053] Length = 652 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 18/177 (10%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 + S G R IY + A E LT+ F S ++SPD I F S+R Sbjct: 154 YKSKGGRGRPIYADRAQTHIYRIPAAGGAPEPLTSGPFNEHSTTWSPDGRYIAFVSNRTD 213 Query: 325 K------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---------E 369 + +++ + + +S + +Y P WSP+G IAF G E Sbjct: 214 RPDDIQQSEIWKVDIHSKAITPLSDHRGLAY-QPAWSPKGGHIAFLATPGQTGTNDSPAE 272 Query: 370 KFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I ++ DG Q R L + D ++ W PSG+ + F+ GDT SI+ N Sbjct: 273 DTHIALIPADGGQMRYLTKSLDRRIEHLRWHPSGKYIYFTAGDRGDTSVYRVSIENN 329 >gi|94970511|ref|YP_592559.1| WD-40-like beta propeller repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94552561|gb|ABF42485.1| WD40-like beta Propeller [Candidatus Koribacter versatilis Ellin345] Length = 367 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 108/239 (45%), Gaps = 32/239 (13%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY----LMDTRIDRAP-KRIGNFRSM 259 Y PS ++ILF + N + Y + +Y + + D + K++ + + Sbjct: 115 YWFPSGERILFSSTHAANAECPPKPDYSKGYVWPIYDTYQIYTAKADGSDLKQLTHEKGY 174 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 + +GK + + ++ +DIY++D + ++LT+ L + +S D +IV+ Sbjct: 175 NAEATITRDGKHIVFTSTRNGDLDIYTMDADGSHVKQLTHELGYDGGPFWSYDGKKIVYR 234 Query: 320 SD--------------------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + R G +L+VM ++GS++ +++++ A+ F P W P G Sbjct: 235 AQHPKNAEEEKDYRDLLGKGLIRPGNLELWVMNADGSNKHQVTRNGAAN-FAPYWLPDGK 293 Query: 360 LIAFTKF-----SGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 I F +G F + ++ +DG+ QER+ P ++ G+ L+++ ++G Sbjct: 294 RIIFASNQADPKNGRDFDLYIINEDGTGQERITFHPDFDGFPMFTSDGKRLVWASNRNG 352 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 27/173 (15%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY+ + ++LT+ N A+ + D IVF S R G +Y M ++GS K+++ Sbjct: 155 IYTAKADGSDLKQLTHEKGYNAEATITRDGKHIVFTSTRNGDLDIYTMDADGSHVKQLTH 214 Query: 344 DKEASY-FDPVWSPQG--------------------DLIAFTKFSGEKFAIGVMKKDGSQ 382 E Y P WS G DL+ + VM DGS Sbjct: 215 --ELGYDGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRPGNLELWVMNADGSN 272 Query: 383 ERLLVEDSNLQ-APTWSPSGRSLIF-SRKKDGDTGS--KLYSIDLNGRNETLI 431 + + + AP W P G+ +IF S + D G LY I+ +G + I Sbjct: 273 KHQVTRNGAANFAPYWLPDGKRIIFASNQADPKNGRDFDLYIINEDGTGQERI 325 >gi|294138815|ref|YP_003554793.1| amidohydrolase family protein [Shewanella violacea DSS12] gi|293325284|dbj|BAJ00015.1| amidohydrolase family protein [Shewanella violacea DSS12] Length = 1079 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 13/152 (8%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D DIY + +Q + L + + +YSPD I F SD G Sbjct: 62 SPNGKTIVF----DMLGDIYQIPMQGGEAKVLAKGIAWQMQPTYSPDGKYIAFTSDENGG 117 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDG 380 + +++M ++GS+ + ++ + P WSP L+A ++G + + + G Sbjct: 118 DNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEVWLYHIAG 177 Query: 381 SQERLLVEDSN----LQAPTWSPSGRSLIFSR 408 + L E N L P +SP GR + FS+ Sbjct: 178 GEGIKLTERPNEQKDLGEPAYSPDGRYIYFSQ 209 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 20/157 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD ++V+E+ GK + + + R+++ D E P WS + FT Sbjct: 371 AQVSPDGKKVVYEA--LGKLWIKSLSNKSDKHSRLTKLDSELRELYPQWSRDSRSVVFTT 428 Query: 366 FSGEKFAIGVMK----KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-------DT 414 + ++ G +K ++ + L E PT+SP G +++ + K G Sbjct: 429 WDDQQ--QGTVKVVSVRNKRSKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPKTWSQ 486 Query: 415 GSKLYSIDLNGRNETLIN----TPAYASDPQWVGFMD 447 + LY +D+ G+ T I P + +D + V FMD Sbjct: 487 NTGLYKVDIQGKQNTRITPDGYQPQFGADSERVYFMD 523 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++NIS S P+ IVF D G +Y + G + K +++ A P +SP G I Sbjct: 56 WMNISVS--PNGKTIVF--DMLG--DIYQIPMQGGEAKVLAKGI-AWQMQPTYSPDGKYI 108 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDG 412 AFT I +M DGS R + +++ L +P WSP + L+ + G Sbjct: 109 AFTSDENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHYTG 161 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 16/133 (12%) Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ K Q+ + +Q +I E ++ + SP G I F G+ + I + Sbjct: 28 SDKAAKWQVNAPTNAPFEQVKIDV-SEGTWMNISVSPNGKTIVFDML-GDIYQIPMQ--- 82 Query: 380 GSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN------ET--L 430 G + ++L + Q PT+SP G+ + F+ ++G G ++ +D +G N ET L Sbjct: 83 GGEAKVLAKGIAWQMQPTYSPDGKYIAFTSDENG--GDNIWIMDADGSNPRAVTDETFRL 140 Query: 431 INTPAYASDPQWV 443 +N+PA++ D Q++ Sbjct: 141 LNSPAWSPDSQYL 153 >gi|298676136|ref|YP_003727885.1| APHP domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298289124|gb|ADI75089.1| APHP domain protein [Methanohalobium evestigatum Z-7303] Length = 1914 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 103/213 (48%), Gaps = 17/213 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFS--PNQQKVAYATYDDEDILRVYLMD----TRI 246 + +M+ DG+N + + + RFS P+ K+A + + +R+ D T I Sbjct: 615 VIIMNPDGSNKETILTGQK---YANRFSWSPDGSKIAVSGHIGNQGIRIINADGSGLTEI 671 Query: 247 DRAPKR--IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + R ++S I +P +G + + ++ DIY++++ +LT + Sbjct: 672 SQGYFRPQTQPWQSQIWSP----DGSKIVYHSDENGNRDIYTINIDGTDRTQLTTNSAKD 727 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + +SPD S+IVF S+REG +++M +GS++ +++ + + P W+P G IAF+ Sbjct: 728 TDSFFSPDGSKIVFVSNREGNNDIWMMNVDGSNKTQLTVNSADDMY-PTWNPDGTKIAFS 786 Query: 365 KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPT 396 + I +++ K+ R ++ D + T Sbjct: 787 SNRAGNYDIWLIELKEDINHRPVINDIQVNPST 819 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 263 PRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P +S G + S+ +E DIY V + + LTN I +SPD ++I+++ Sbjct: 502 PVWSPTGNEIVFGKSIPTEEKYDIYKVSVDNKYESVLTNLPNIEGHPRWSPDGNKILYKK 561 Query: 321 DR-EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--IGVMK 377 D G +++M S+GS Q ++ D ++ VWSP G I + + +M Sbjct: 562 DNTNGWYNVWIMNSDGSSQTALTNDAQSEC--AVWSPSGSKIVYKHSDNSDLPEDVIIMN 619 Query: 378 KDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 DGS +E +L +WSP G + S G+ G ++ + D +G E Sbjct: 620 PDGSNKETILTGQKYANRFSWSPDGSKIAVSGHI-GNQGIRIINADGSGLTE 670 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 352 PVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 P WSP G+ I + K + + + +M DGS + L D+ + WSPSG +++ Sbjct: 548 PRWSPDGNKILYKKDNTNGWYNVWIMNSDGSSQTALTNDAQSECAVWSPSGSKIVYKHSD 607 Query: 411 DGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 + D + ++ +G N ET++ YA+ W Sbjct: 608 NSDLPEDVIIMNPDGSNKETILTGQKYANRFSW 640 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 25/241 (10%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI- 274 PR+SP+ K+ Y + V++M++ + +S +S +G + + Sbjct: 547 HPRWSPDGNKILYKKDNTNGWYNVWIMNSDGSSQTALTNDAQSECAV--WSPSGSKIVYK 604 Query: 275 -SVQKDEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 S D D+ ++ SN LT + N S+SPD S+I S G + + ++ Sbjct: 605 HSDNSDLPEDVIIMNPDGSNKETILTGQKYAN-RFSWSPDGSKIAV-SGHIGNQGIRIIN 662 Query: 333 SNGSDQKRISQDKEASYFDP--------VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 ++GS ISQ YF P +WSP G I + I + DG+ Sbjct: 663 ADGSGLTEISQ----GYFRPQTQPWQSQIWSPDGSKIVYHSDENGNRDIYTINIDGTDRT 718 Query: 385 LLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD--PQ 441 L +S + +SP G ++F ++G+ + ++ ++++G N+T + T A D P Sbjct: 719 QLTTNSAKDTDSFFSPDGSKIVFVSNREGN--NDIWMMNVDGSNKTQL-TVNSADDMYPT 775 Query: 442 W 442 W Sbjct: 776 W 776 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%) Query: 351 DPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFS 407 +PVWSP G+ I F K + EK+ I + D E +L N++ P WSP G +++ Sbjct: 501 NPVWSPTGNEIVFGKSIPTEEKYDIYKVSVDNKYESVLTNLPNIEGHPRWSPDGNKILY- 559 Query: 408 RKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 KKD G ++ ++ +G ++T + A + W Sbjct: 560 -KKDNTNGWYNVWIMNSDGSSQTALTNDAQSECAVW 594 >gi|254444922|ref|ZP_05058398.1| hypothetical protein VDG1235_3165 [Verrucomicrobiae bacterium DG1235] gi|198259230|gb|EDY83538.1| hypothetical protein VDG1235_3165 [Verrucomicrobiae bacterium DG1235] Length = 504 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++ + K+ + + Q+++ +I+++D+++ LTN ++ Y+PD + F S R G Sbjct: 342 WTPDAKKLIFTGQRNDQWNIWTIDIETKKEVALTNNNTLDDGPEYTPDGKYVYFNSVRTG 401 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIG 374 Q++ M+++GS+Q++++ D +F P +SP G + + F + K + Sbjct: 402 TMQIWRMKADGSEQEQVTFDAYNDWF-PHFSPDGKWMVYISFPVDIDPNDHPFYKKVYLR 460 Query: 375 VMKKDGSQER----LLVEDSNLQAPTWSPSGRSLIF 406 +M G + L + P+WSP + F Sbjct: 461 LMPASGGVPKTIAYLYGGQGTINVPSWSPDSSKIAF 496 >gi|89889850|ref|ZP_01201361.1| putative periplasmic component of the Tol biopolymer transport system [Flavobacteria bacterium BBFL7] gi|89518123|gb|EAS20779.1| putative periplasmic component of the Tol biopolymer transport system [Flavobacteria bacterium BBFL7] Length = 376 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 29/195 (14%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ DI+ DL+ N T +LTN + + SP +IVF SDR G +LY M +GS+ K Sbjct: 161 DSYDIFVADLEGNITAQLTNEKGYDAEPTVSPQGDKIVFTSDRSGDLELYTMDIDGSNVK 220 Query: 340 RISQD---KEASYFDPVWS--------PQG--------DLIAFTKFSGEKFAIGVMKKDG 380 +I+ + ++F P S P+ DL+ + + + DG Sbjct: 221 QITYELGYDGGAFFSPDGSQLIFRSSRPKTEEEIKEYKDLLKVGLVQPTEMELYICNADG 280 Query: 381 SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNG-------RNETL 430 S R L + N +P + P G+ ++FS + + G LY I+ +G ET Sbjct: 281 SDLRQLTQLGNANWSPFFLPDGKRVLFSSNFEAERGFPFNLYMINTDGTGLERITHGETF 340 Query: 431 INTPAYASDPQWVGF 445 P ++++ +++ F Sbjct: 341 DAFPVFSNNGKYLAF 355 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K + YD DI V ++ I ++ N + P S G + + + + +++ Sbjct: 154 KYVWPIYDSYDIF-VADLEGNI---TAQLTNEKGYDAEPTVSPQGDKIVFTSDRSGDLEL 209 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------------ 326 Y++D+ + +++T L + A +SPD SQ++F S R E Sbjct: 210 YTMDIDGSNVKQITYELGYDGGAFFSPDGSQLIFRSSRPKTEEEIKEYKDLLKVGLVQPT 269 Query: 327 --QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK---FAIGVMKKDG 380 +LY+ ++GSD ++++Q A++ P + P G + F + F E+ F + ++ DG Sbjct: 270 EMELYICNADGSDLRQLTQLGNANW-SPFFLPDGKRVLFSSNFEAERGFPFNLYMINTDG 328 Query: 381 SQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTG 415 + + A P +S +G+ L FS ++ G Sbjct: 329 TGLERITHGETFDAFPVFSNNGKYLAFSSNRNNGGG 364 >gi|268315824|ref|YP_003289543.1| periplasmic component of the Tol biopolymer transport system-like protein [Rhodothermus marinus DSM 4252] gi|262333358|gb|ACY47155.1| periplasmic component of the Tol biopolymer transport system-like protein [Rhodothermus marinus DSM 4252] Length = 497 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 15/161 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G+ + + ++D DIY + ++ RLT+T ++ YSPD I F S R G Sbjct: 334 WSPDGRYLVYTAERDGDYDIYRIPVEGGEEVRLTDTPGLDDGPEYSPDGRYIYFNSVRSG 393 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF------SGEKF----AIG 374 Q++ M+ +G++ ++++ D ++F P SP G + F + S F + Sbjct: 394 TMQIWRMRPDGTEPEQLTDDAFNNWF-PHVSPDGRWVLFLSYLPDVDPSDHPFYRLVYLR 452 Query: 375 VMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKD 411 +M G R++ L +W+P R F D Sbjct: 453 MMPAAGGSPRVVAYLYGGQGTLNVNSWAPDSRHAAFVSNSD 493 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 351 DPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 D V SP G + + + G + I V+ +G R + WSP GR L+++ Sbjct: 285 DHVLSPDGRWLGLSHHAPEYGGRSIIYVVPIEGGTPRQVTPTGPSYLHGWSPDGRYLVYT 344 Query: 408 RKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 ++DGD +Y I + G E L +TP P++ Sbjct: 345 AERDGDY--DIYRIPVEGGEEVRLTDTPGLDDGPEY 378 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 D + + + G + + + G ++ L ++++QAP W+P GR+LI++ +DG L Sbjct: 209 DFVPYQDYIGSLLEV-LDVETGRRKVLYTSEASIQAPNWTPDGRALIYN--QDG----LL 261 Query: 419 YSIDLNGRNETLINT 433 Y DL R ++I T Sbjct: 262 YRFDLATRRPSVIPT 276 >gi|221632929|ref|YP_002522151.1| acylaminoacyl-peptidase [Thermomicrobium roseum DSM 5159] gi|221156779|gb|ACM05906.1| acylaminoacyl-peptidase [Thermomicrobium roseum DSM 5159] Length = 309 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 26/219 (11%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRI--------DRAPKRIGNFRSM-----ILAPR 264 R+SP+ ++VA+ D +Y+ DT +R P G++ + L+P Sbjct: 53 RWSPDGRRVAFVRLGDA-YSDLYIADTSTGEIRQLTRNRPPFTPGSYEYVQNAVWALSPA 111 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERL---TNTLFINI-SASYSPDSSQIVF-- 318 +S +G+R + ++ + + + T L T L N+ ++SPD S+IVF Sbjct: 112 WSPDGQRLVYVSDRNTLKNFLWLIPSAGGTPELIQATTRLGDNVDQPAFSPDGSRIVFIH 171 Query: 319 ----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 E + + L+++ + + Q + Y P WSP G I + GE + Sbjct: 172 RVTREDGLQRRTDLWIVDLRSGNLTPLVQGGDGQYA-PAWSPDGQWIVYVGRHGESNDLF 230 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDG 412 ++ G Q + + + +PTWSP GR++ + + ++DG Sbjct: 231 LVPAMGGQPIQITDSGVVASPTWSPDGRAIAYLQLERDG 269 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 20/176 (11%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLM-------DTRIDRAPKRIGNFRSMILAPRFSS 267 P +SP+ Q++ Y + D + L+ +L + +A R+G+ + P FS Sbjct: 108 LSPAWSPDGQRLVYVS--DRNTLKNFLWLIPSAGGTPELIQATTRLGD---NVDQPAFSP 162 Query: 268 NGKRALI--SVQKDEAM----DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +G R + V +++ + D++ VDL+S L + ++SPD IV+ Sbjct: 163 DGSRIVFIHRVTREDGLQRRTDLWIVDLRSGNLTPLVQGGDGQYAPAWSPDGQWIVYVGR 222 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 L+++ + G +I+ + P WSP G IA+ + + FA+ V++ Sbjct: 223 HGESNDLFLVPAMGGQPIQITDSGVVA--SPTWSPDGRAIAYLQLERDGFAVYVLE 276 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/169 (20%), Positives = 72/169 (42%), Gaps = 29/169 (17%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK----EASY---------FDPV 353 A +SPD ++ F + LY+ ++ + +++++++ SY P Sbjct: 52 ARWSPDGRRVAFVRLGDAYSDLYIADTSTGEIRQLTRNRPPFTPGSYEYVQNAVWALSPA 111 Query: 354 WSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIFSR 408 WSP G + + + + + F + G+ E + N+ P +SP G ++F Sbjct: 112 WSPDGQRLVYVSDRNTLKNFLWLIPSAGGTPELIQATTRLGDNVDQPAFSPDGSRIVFIH 171 Query: 409 KKDGDTG----SKLYSIDLNGRNETLI-------NTPAYASDPQWVGFM 446 + + G + L+ +DL N T + PA++ D QW+ ++ Sbjct: 172 RVTREDGLQRRTDLWIVDLRSGNLTPLVQGGDGQYAPAWSPDGQWIVYV 220 >gi|168702262|ref|ZP_02734539.1| probable TolB protein [Gemmata obscuriglobus UQM 2246] Length = 342 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDRE 323 +S++GK+ + S + +++++ +R+T+ N +SPD +++VF +DR+ Sbjct: 170 YSADGKKIVYSAGNAGNVQLFTMNADGTNVKRITDVANCYNGGPFFSPDGTRVVFRADRK 229 Query: 324 GKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------KFSGEKFAIGV 375 K+ QLYV+ ++G+ +K ++ D + Y+ P W I +T + + + Sbjct: 230 EKDRLQLYVINADGTGEKALTSDDKWVYWAPYWYKDNRHIIYTGADHSNPIAPPNYDLHW 289 Query: 376 MKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 M + G + R+ P ++P G ++++ ++G ++LY D Sbjct: 290 MDTETGKKTRITFAPGQDVLPVFNPDGTKVMWTSSREGGRAAQLYIADF 338 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 94/247 (38%), Gaps = 44/247 (17%) Query: 202 NIRYLTPSRDQI-LFEPRFSPNQQKVAYATYDDED---ILRVYLMDTRIDRAPKRIGNFR 257 NIR LT D + E FSP+ +V + + + ++++MD R +A RI Sbjct: 29 NIRQLT--TDYVRAGEGYFSPDGTRVIFQAEEKDTGNPFYQIFIMDLRTGKA-TRISPGV 85 Query: 258 SMILAPRFSSNGKRALISVQK--------------------------------DEAMDIY 285 F +GKR L + D M IY Sbjct: 86 GRTTCGYFHPDGKRVLFASSHSDPDAKKHQEAEVKQREEDKKKGVRRRYSWDFDPHMKIY 145 Query: 286 SVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 L + LT + SYS D +IV+ + G QL+ M ++G++ KRI+ Sbjct: 146 EAGLDGTGLKCLTPDAKVYTAEGSYSADGKKIVYSAGNAGNVQLFTMNADGTNVKRITDV 205 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEK--FAIGVMKKDGSQERLLVEDSN--LQAPTWSPS 400 P +SP G + F EK + V+ DG+ E+ L D AP W Sbjct: 206 ANCYNGGPFFSPDGTRVVFRADRKEKDRLQLYVINADGTGEKALTSDDKWVYWAPYWYKD 265 Query: 401 GRSLIFS 407 R +I++ Sbjct: 266 NRHIIYT 272 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 11/148 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDDEDILRVYLMDTRIDRAPK 251 L M+ DG N++ +T + P FSP+ +V + A ++D L++Y+++ Sbjct: 189 LFTMNADGTNVKRITDVANCYNGGPFFSPDGTRVVFRADRKEKDRLQLYVINADGTGEKA 248 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEA-------MDIYSVDLQSNATERLTNTLFIN 304 + + + AP + + R +I D + D++ +D ++ R+T + Sbjct: 249 LTSDDKWVYWAPYWYKD-NRHIIYTGADHSNPIAPPNYDLHWMDTETGKKTRITFAPGQD 307 Query: 305 ISASYSPDSSQIVFESDREGKE--QLYV 330 + ++PD +++++ S REG QLY+ Sbjct: 308 VLPVFNPDGTKVMWTSSREGGRAAQLYI 335 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 43/217 (19%) Query: 265 FSSNGKRALISVQKDEAMD----IYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-- 318 FS +G R + ++ + + I+ +DL++ R++ + + PD +++F Sbjct: 45 FSPDGTRVIFQAEEKDTGNPFYQIFIMDLRTGKATRISPGVGRTTCGYFHPDGKRVLFAS 104 Query: 319 -ESDREGKEQ-----------------------------LYVMQSNGSDQKRISQDKEAS 348 SD + K+ +Y +G+ K ++ D + Sbjct: 105 SHSDPDAKKHQEAEVKQREEDKKKGVRRRYSWDFDPHMKIYEAGLDGTGLKCLTPDAKVY 164 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIF 406 + +S G I ++ + + M DG+ + + + +N P +SP G ++F Sbjct: 165 TAEGSYSADGKKIVYSAGNAGNVQLFTMNADGTNVKRITDVANCYNGGPFFSPDGTRVVF 224 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + +LY I+ +G E A SD +WV Sbjct: 225 RADRKEKDRLQLYVINADGTGEK-----ALTSDDKWV 256 >gi|103486587|ref|YP_616148.1| amidohydrolase [Sphingopyxis alaskensis RB2256] gi|98976664|gb|ABF52815.1| amidohydrolase [Sphingopyxis alaskensis RB2256] Length = 1078 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 11/137 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++ R+ L ++PD +I F SDR G + +++M +GSD++++S Sbjct: 76 DIYTVPIEGGTPTRIAEGLAYEHQPRFAPDGKRIAFVSDRGGGDNVWIMNRDGSDKRQVS 135 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----VMKKDGSQERLLVEDSN------ 391 ++ P WSP G + K ++G + G LV+ + Sbjct: 136 KEDFRLLNQPNWSPDGQFLVAKKHFTTSRSLGTGEVWIYHVSGGAGVPLVKKPDERHQKE 195 Query: 392 LQAPTWSPSGRSLIFSR 408 L P ++P G+S+ ++R Sbjct: 196 LGEPIFAPDGKSVYYTR 212 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTK 365 A SPD IVFE+ +L+V + G +R++ K+A+ P WS G I F + Sbjct: 374 AEVSPDGRSIVFET----LGKLWVKPATGGTARRLTSAKDAAMEAWPSWSRDGKSIVFVR 429 Query: 366 FS----GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 ++ GE G GS ++ + P +SP R+++F ++ G S+ + Sbjct: 430 WTDAGLGEIHVTGA--SGGSSRKVTATPGHYAEPRFSPDDRTIVFEWRRGGGLVSERWGE 487 Query: 422 D 422 D Sbjct: 488 D 488 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 34/208 (16%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-AS 308 P RI + PRF+ +GKR + +++ ++ + +++ F ++ + Sbjct: 87 PTRIAEGLAYEHQPRFAPDGKRIAFVSDRGGGDNVWIMNRDGSDKRQVSKEDFRLLNQPN 146 Query: 309 YSPDSSQIV----FESDRE-GKEQLYVMQSNGSDQ----KRISQDKEASYFDPVWSPQGD 359 +SPD +V F + R G ++++ +G K+ + + +P+++P G Sbjct: 147 WSPDGQFLVAKKHFTTSRSLGTGEVWIYHVSGGAGVPLVKKPDERHQKELGEPIFAPDGK 206 Query: 360 LIAFTK------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 + +T+ F E++++ +DGS + + PT SP G Sbjct: 207 SVYYTRNVTPGPIFEYAQDSNRDLFHIERYSL----EDGSISTVASGNGGAVRPTPSPDG 262 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + L F R++ SKLY DL ET Sbjct: 263 KRLAFVRREGAR--SKLYVKDLASGAET 288 >gi|116620277|ref|YP_822433.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223439|gb|ABJ82148.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 880 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 7/153 (4%) Query: 266 SSNGKRALISVQKDEAMDIYSVDL-----QSNATERLTNTLFINISASYSPDSSQIVFES 320 S+ G R L+ +Q +DIY DL + + RL ++ ++A SPD S+I F S Sbjct: 583 SAKGDR-LVYIQTSLDIDIYRQDLPQAGEKPPPSVRLISSTRTEMNARISPDGSKIAFPS 641 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G +++V SNG R++ P WS IAF + V++ G Sbjct: 642 DRTGSWEIWVAASNGEHPVRLTSFGAGETGTPRWSADSRQIAFDARVRGNAEVYVVEASG 701 Query: 381 SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 + R LV S P+WS G+ + F + G Sbjct: 702 GKPRPLVTGSADNFGPSWSHDGKWVYFISNRLG 734 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/227 (21%), Positives = 100/227 (44%), Gaps = 12/227 (5%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLC-VMDRDGANIRYLTPSRDQILFEPRFSPN 222 Q T KGD R++++ S+ I + L ++ ++R ++ +R ++ R SP+ Sbjct: 579 QVATSAKGD---RLVYIQTSLDIDIYRQDLPQAGEKPPPSVRLISSTRTEM--NARISPD 633 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEA 281 K+A+ + D +++ + + P R+ +F + PR+S++ ++ + Sbjct: 634 GSKIAFPS-DRTGSWEIWVAASNGEH-PVRLTSFGAGETGTPRWSADSRQIAFDARVRGN 691 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++Y V+ L N S+S D + F S+R G+EQ++ M G ++ Sbjct: 692 AEVYVVEASGGKPRPLVTGSADNFGPSWSHDGKWVYFISNRLGQEQVWKMPVAGGPAIQL 751 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + F+ S G + T+ + +I + DG E LVE Sbjct: 752 THGGAVCGFE---STDGKWVYVTRAYEQPTSIWRVPADGGDEVKLVE 795 >gi|332883942|gb|EGK04222.1| hypothetical protein HMPREF9456_01250 [Dysgonomonas mossii DSM 22836] Length = 306 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 19/165 (11%) Query: 261 LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 LAP + S +G ++ + D+YS+ + +RLTN+ ++ YSPD + I Sbjct: 134 LAPSYLHGWSPDGLYLTYCAERKDNYDVYSIPAKGGVEKRLTNSDGLDDGPEYSPDGNYI 193 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---------- 366 F S R G Q++ M+ +G+ Q +++ D+ + + P SP G L+ F + Sbjct: 194 WFNSVRTGLMQIWRMKIDGTKQTQMTFDETRNSWFPHISPNGQLVVFIAYYKGDLKPDEH 253 Query: 367 -SGEKFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 + + +M +G + + L + + +WSP + + F Sbjct: 254 LPNKNVELRIMPTNGGEPKTLTKLFGGQGTINVNSWSPDSKYIAF 298 >gi|239997142|ref|ZP_04717666.1| amidohydrolase [Alteromonas macleodii ATCC 27126] Length = 714 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V + LT NI S SPD QI F SD++G ++VM +GS+ ++++ Sbjct: 82 DLYKVSMSGGDATPLTQDFAWNIHPSISPDGKQIAFISDKDGLSNVWVMDIDGSNLRQVT 141 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 ++K P WSP G+ + TK Sbjct: 142 KEKSNLIHSPKWSPDGEYLVVTK 164 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 14/149 (9%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D I+ LT D + PRFS + + + Y T++D+D+ V ++ R + K Sbjct: 398 LYVRDVKSGKIKRLTKQNDHDEYYPRFSNDGKSIVYTTWNDQDLGTVRVVSARGGKG-KV 456 Query: 253 IGNFRSMILAPRFSSNGKRA---------LISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + P FS++G++ L+ + IY DL+ + E++++ + Sbjct: 457 VTQQPGHYIEPSFSADGEKVVFRKFTGGYLLDPKYSVEPGIYVADLEKDTVEKVSDGGY- 515 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQ 332 +A ++ ++ ++ F ++ G E Y Q Sbjct: 516 --NAHFAGNNDRVYF-TESAGGEAYYETQ 541 >gi|301311762|ref|ZP_07217687.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 20_3] gi|300830322|gb|EFK60967.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 20_3] Length = 304 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 266 SSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S++GK+ IS ++D IY++ + RL L + +SPD Q+ + ++R Sbjct: 98 SADGKQIAISNGTKEDGRSRIYTLPFEG-GVPRLITPLGPSYLHGWSPDGKQLAYCAERN 156 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +YV+ + G ++KR++ E P +SP G I F + MK DGS++ Sbjct: 157 GNFDVYVIPALGGEEKRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 215 Query: 384 RLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + E N P SP G+ ++F GD + L +N L PA +P+ Sbjct: 216 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQH---LANKNVELRLMPAEGGEPK 272 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK+ +++ D+Y + +RLT ++ YSP I F S R G Sbjct: 142 WSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTG 201 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFA-----I 373 Q++ M+++GS+Q +++ D+ + + P SP G I F ++ G+ A + Sbjct: 202 LMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVEL 261 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 +M +G + + LV+ + +W+P + F Sbjct: 262 RLMPAEGGEPKTLVKLFGGQGTINVNSWAPDSKRFAF 298 >gi|150009575|ref|YP_001304318.1| Tol biopolymer transport system periplasmic protein [Parabacteroides distasonis ATCC 8503] gi|298373967|ref|ZP_06983925.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 3_1_19] gi|149937999|gb|ABR44696.1| periplasmic component of the Tol biopolymer transport system [Parabacteroides distasonis ATCC 8503] gi|298268335|gb|EFI09990.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 3_1_19] Length = 304 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 266 SSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S++GK+ IS ++D IY++ + RL L + +SPD Q+ + ++R Sbjct: 98 SADGKQIAISNGTKEDGRSRIYTLPFEG-GVPRLITPLGPSYLHGWSPDGKQLAYCAERN 156 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +YV+ + G ++KR++ E P +SP G I F + MK DGS++ Sbjct: 157 GNFDVYVIPALGGEEKRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 215 Query: 384 RLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + E N P SP G+ ++F GD + L +N L PA +P+ Sbjct: 216 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQH---LANKNVELRLMPAEGGEPK 272 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK+ +++ D+Y + +RLT ++ YSP I F S R G Sbjct: 142 WSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTG 201 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFA-----I 373 Q++ M+++GS+Q +++ D+ + + P SP G I F ++ G+ A + Sbjct: 202 LMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVEL 261 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 +M +G + + LV+ + +W+P + F Sbjct: 262 RLMPAEGGEPKTLVKLFGGQGTINVNSWAPDSKRFAF 298 >gi|256838294|ref|ZP_05543804.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739213|gb|EEU52537.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 306 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 266 SSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S++GK+ IS ++D IY++ + RL L + +SPD Q+ + ++R Sbjct: 100 SADGKQIAISNGTKEDGRSRIYTLPFEG-GVPRLITPLGPSYLHGWSPDGKQLAYCAERN 158 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +YV+ + G ++KR++ E P +SP G I F + MK DGS++ Sbjct: 159 GNFDVYVIPALGGEEKRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 217 Query: 384 RLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + E N P SP G+ ++F GD + L +N L PA +P+ Sbjct: 218 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQH---LANKNVELRLMPAEGGEPK 274 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK+ +++ D+Y + +RLT ++ YSP I F S R G Sbjct: 144 WSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTG 203 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFA-----I 373 Q++ M+++GS+Q +++ D+ + + P SP G I F ++ G+ A + Sbjct: 204 LMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVEL 263 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 +M +G + + LV+ + +W+P + F Sbjct: 264 RLMPAEGGEPKTLVKLFGGQGTINVNSWAPDSKRFAF 300 >gi|40062542|gb|AAR37487.1| tolB protein, putative [uncultured marine bacterium 106] Length = 442 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 36/308 (11%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 RK+ ++D ++ G +G SRI + ++ S KN + + DG ++ Sbjct: 152 RKLGLKLADWFVENTLGFEGVSTSRISYTAQK--SNRRKN-IFLSSFDGTVLK------- 201 Query: 212 QILFEPRFSPN--QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA------- 262 RFS N ++ ++D +IL L + A + R+ IL+ Sbjct: 202 ------RFSYNLGSNNLSSWSFDGNNILYTTLTRSSAQLAIQPAKRLRAKILSFPSGFQP 255 Query: 263 --PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 ++ +G+ L+++ K DIY+ L++ ++ + S SPD +I F S Sbjct: 256 LSASWNLDGESILLTLMKQGNADIYNYHLENAQLNKIFAWKSLETSPQMSPDGRKIAFVS 315 Query: 321 D--REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 D R + Q+Y+ N +R++ + P WSP G + + + F + + Sbjct: 316 DSARPRRPQIYIHNLNTLKTERVTFKGNFNS-SPNWSPNGTQLIYERQEKGYFQLYIYTL 374 Query: 379 DGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPA- 435 + +L N + P W+P+G+ ++FS KK KLY I GR + TP+ Sbjct: 375 STRRHLQLTFGRFNSEKPDWAPNGKQIVFSAKKKNV--PKLYYISSFGGRTIRVTKTPSN 432 Query: 436 -YASDPQW 442 ++P W Sbjct: 433 IAETNPVW 440 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 9/144 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILR--VYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRA 272 P+ SP+ +K+A+ + D R +Y+ + + + GNF S +P +S NG + Sbjct: 302 PQMSPDGRKIAFVS-DSARPRRPQIYIHNLNTLKTERVTFKGNFNS---SPNWSPNGTQL 357 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + Q+ +Y L + +LT F + ++P+ QIVF + ++ +LY + Sbjct: 358 IYERQEKGYFQLYIYTLSTRRHLQLTFGRFNSEKPDWAPNGKQIVFSAKKKNVPKLYYIS 417 Query: 333 SNGSDQKRISQD-KEASYFDPVWS 355 S G R+++ + +PVWS Sbjct: 418 SFGGRTIRVTKTPSNIAETNPVWS 441 >gi|297182007|gb|ADI18182.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0200_39N20] Length = 428 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 22/230 (9%) Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---------PRFSSNGKRALISVQKDE 280 ++D+++IL ++ A + RS ILA + +GK L+++ K Sbjct: 202 SFDNKNILYTTFTRSKAQLALQPSIRLRSKILAFPAGSQPLGASWHPDGKSILLTLMKQG 261 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQ 338 DIYS +L E L N + S SPD +I F SD + Q+Y+ Sbjct: 262 NADIYSYNLSDAILESLFNWKSLETSPHMSPDGKKIAFVSDAAYPRRPQIYIHNLATEKT 321 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI---GVMKKDGSQERLLVEDSNLQAP 395 +R++ + P WSP +A+ + F + ++ + Q L + + P Sbjct: 322 ERVTFKGNYNS-SPKWSPDSTQLAYERQKKNIFQLYKYNLLTRRHVQ--LTFGRHDFEKP 378 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPAYASD--PQW 442 WSP+G+ +IFS K SKLY I GR + +P S+ P W Sbjct: 379 DWSPNGKQIIFSAKM--KKVSKLYYISSFGGRTIRVTKSPPNISETNPVW 426 >gi|260062216|ref|YP_003195296.1| hypothetical protein RB2501_11502 [Robiginitalea biformata HTCC2501] gi|88783778|gb|EAR14949.1| hypothetical protein RB2501_11502 [Robiginitalea biformata HTCC2501] Length = 1150 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ LT L + +SPD +++ SD+ G E +++M ++ +++ Sbjct: 80 DIYTIPATGGTATALTRGLPYEVHPRFSPDGKSLLYISDKSGSENIWIMDLESREETQLT 139 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPS 400 + + YF WSP G + ++ G +LL + NL+ P +SP Sbjct: 140 KSENKHYFSADWSPDGTYVVGAAGRRNIKLHLYHREGGGGSQLLDKPENLKTIDPAFSPD 199 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL 423 G+ + FSR+ TG+ Y+ L Sbjct: 200 GKRIYFSRR----TGAWNYNAQL 218 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 12/173 (6%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFE 319 + PRFS +GK L K + +I+ +DL+S +LT + + SA +SPD + +V Sbjct: 102 VHPRFSPDGKSLLYISDKSGSENIWIMDLESREETQLTKSENKHYFSADWSPDGTYVVGA 161 Query: 320 SDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--------EK 370 + R K LY + G Q + + + DP +SP G I F++ +G + Sbjct: 162 AGRRNIKLHLYHREGGGGSQ-LLDKPENLKTIDPAFSPDGKRIYFSRRTGAWNYNAQLPQ 220 Query: 371 FAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + IG +DG + + PT SP G+ L+F + + TG +L +++ Sbjct: 221 YQIGTYDMEDGGSAVITSRYGSAFTPTPSPDGKWLVFGSRYEEHTGLRLRNLE 273 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y ++L A RLT+ F ++SPD ++VF + G LY ++++G R Sbjct: 382 LYVMELPDGAPRRLTDHEFTEAQPAWSPDGGELVFSGWQPGGGHLYKVRTDGRGGARAIT 441 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLL 386 Y P WS D I F + + + G GS+E L+ Sbjct: 442 RVPGIYSQPAWSYNSDRIVFLRGYAQAYDEGTGPNTRGSREDLV 485 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 D V SP G +AFT + + VM+ DG+ RL + P WSP G L+FS Sbjct: 364 DAVPSPDGKHLAFTALN----RLYVMELPDGAPRRLTDHEFTEAQPAWSPDGGELVFSGW 419 Query: 410 KDGDTGSKLYSIDLNGRN--ETLINTPAYASDPQW 442 + G G LY + +GR + P S P W Sbjct: 420 QPG--GGHLYKVRTDGRGGARAITRVPGIYSQPAW 452 >gi|182416136|ref|YP_001821202.1| WD40 domain-containing protein [Opitutus terrae PB90-1] gi|177843350|gb|ACB77602.1| WD40 domain protein beta Propeller [Opitutus terrae PB90-1] Length = 518 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 31/217 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 F Q +++ T +D+ VY + T + PK F +S +GK + Sbjct: 307 FDGKQLGISHHTAEDDGRSVVYKLPSTGGTPVRVTPKSPSYFHG------WSPDGKWMVY 360 Query: 275 SVQKDEA------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + + E DIY + RLTN+ ++ +S D I F S R G QL Sbjct: 361 TGGRKETPGGPDKYDIYKISADGGEEVRLTNSPGLSDGPEFSRDGQWIYFNSTRTGLMQL 420 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIGVMKK 378 + M+ +GS Q++++ D+ ++F P SP G IAF + + + + +M Sbjct: 421 WRMRPDGSGQEQLTNDEFNNWF-PHLSPDGKWIAFISYGQDVKPSEHPYYKQVYLRLMPA 479 Query: 379 DGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKD 411 G Q R++ + P+W+P + F D Sbjct: 480 SGGQPRVIAYVYGGQGTINVPSWAPDSTRIAFVSNTD 516 >gi|242310687|ref|ZP_04809842.1| translocation protein TolB [Helicobacter pullorum MIT 98-5489] gi|239523085|gb|EEQ62951.1| translocation protein TolB [Helicobacter pullorum MIT 98-5489] Length = 426 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 41/344 (11%) Query: 108 AQVLVTGRVIKE-GKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQS 165 A++ + RV E +D L V +L+D + K++ +S A ++ +AH ++ DI Sbjct: 91 AKIDLIARVSAEILQDGLVVNLQLYDANSGTLALSKEYKNSRAETYPFLAHKLAIDINDY 150 Query: 166 ITGEKGDFNSRILFVSESVVSG-----------IIKNSLCVMDRDGANIRYLTPSRDQIL 214 I D+ RI+ VS G KNSL + G NI Sbjct: 151 IQAPNVDWMERIVVVSYYTKPGESEILLSDYTLTYKNSLI---KGGLNIF---------- 197 Query: 215 FEPRFSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P+++ QQ Y T Y D+ L Y + T + +I + M++A S + + L Sbjct: 198 --PKWANEQQNAFYYTKYLDKPTLFKYDLTTGQN---TQIISSEGMLVASDVSKDSTKIL 252 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +++ +E DI+ D+ S +LTN I++S ++ D +++F SDR G ++ + Sbjct: 253 LTMAPNEQADIFLYDIPSAKLTKLTNYRGIDVSGNFIEDEKRVMFISDRLGYPNVFAISV 312 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------FSGEKFAIGVMKKDGSQERLLV 387 G + Q + + G+ I ++ FS F + ++ R L Sbjct: 313 EGEANGSLEQMVFHGRNNNAANAFGEYIVYSSRETNEDFSRNTFNLYLVSTKSDFIRRLS 372 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + Q P +S G ++++ + + S L I LN N+TL+ Sbjct: 373 ANGINQLPRFSKDGETIMYVKHESNQ--SALGIIRLN-YNKTLL 413 >gi|305432653|ref|ZP_07401814.1| translocation protein TolB [Campylobacter coli JV20] gi|304444364|gb|EFM37016.1| translocation protein TolB [Campylobacter coli JV20] Length = 403 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 10/195 (5%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D R ++A K + + M++A S +G + L+++ Sbjct: 179 PKWGNKEQSIFYYTAYDHDRPTLYRYDLRTNKASKILAS-GGMVVASDVSLDGSKLLVTM 237 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYVMQ-SN 334 + D+Y DL S +LTN I+++ ++ D S+ VF SDR G +++ +N Sbjct: 238 APKDQPDVYLYDLNSKNLTQLTNYSGIDVNGNFIGVDDSKFVFVSDRLGYPNIFIQNLNN 297 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDSN 391 GS ++ + K S S D + ++ + F I +M + + R + Sbjct: 298 GSAEQAVFHGKNNS----AVSTYKDFLVYSSREPNQVGVFNIYLMSINSTGIRQFTANGK 353 Query: 392 LQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 354 NLFPRFSSDGGSIVF 368 >gi|109896795|ref|YP_660050.1| amidohydrolase [Pseudoalteromonas atlantica T6c] gi|109699076|gb|ABG38996.1| amidohydrolase [Pseudoalteromonas atlantica T6c] Length = 1113 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 16/155 (10%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NG++ + D D+Y + LT NI ++SPD +I F SDR G Sbjct: 71 SPNGEKFVF----DMLGDLYVSSIGGGEATSLTQDFAWNIQPTFSPDGKKIAFISDRGGM 126 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMK 377 ++VM S+GS+ +++++K P WSP G I K +GE + Sbjct: 127 SNVWVMNSDGSNLVQVTKEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIWLYHHSG 186 Query: 378 KDGSQERLLVEDS----NLQAPTWSPSGRSLIFSR 408 DG + V + N+ P +SP G+ L +++ Sbjct: 187 GDGMVLKKRVHGNPDQKNIADPAFSPDGKYLYYTQ 221 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 28/189 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + + ++ LT D + PR+S + +K+ + T++D+D+ V + R+ K Sbjct: 400 LYIKEIKSGKVKRLTRQNDHDEYYPRYSHDGKKIVFTTWNDKDLGSVRTVSAS-GRSEKV 458 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAM-----------DIYSVDLQSNATERLTNTL 301 I + P FS++ K LI+ K IY+ ++ R+ Sbjct: 459 ISKEPGHFIEPSFSTDDK--LITYNKKTGGYLLAPEYSVEPGIYTATVKGEKHRRVAK-- 514 Query: 302 FINISA-SYSPDSSQIVFESDREG----KEQLYVMQSNGSDQKR--ISQDKEASYFDPVW 354 N SA ++ D+S++ F G ++QL + NG D++ DK A Y Sbjct: 515 --NGSAPHFAGDNSRVYFTESVSGSDYPEQQLVSVDLNGEDKREHLYGGDKIAEY---RL 569 Query: 355 SPQGDLIAF 363 SP IAF Sbjct: 570 SPDKKWIAF 578 >gi|221233054|ref|YP_002515490.1| TolB protein [Caulobacter crescentus NA1000] gi|220962226|gb|ACL93582.1| TolB protein [Caulobacter crescentus NA1000] Length = 1115 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + R+ L + +SPD +I F SDR G + ++VM +G D+++++ Sbjct: 93 DIYTMPITGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRGGGDNIWVMNLDGGDKRQVT 152 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQ------ERLLVE 388 +++ P WSP G I K +GE + V G Q E+L E Sbjct: 153 KEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEQLQKE 212 Query: 389 DSNLQAPTWSPSGRSLIFSR 408 L P ++ G+S+ ++R Sbjct: 213 ---LGEPIYAADGKSVFYTR 229 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 17/124 (13%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTK 365 AS SPD +VFE+ +L++ + G + +R +S D++A P WS G I F Sbjct: 391 ASVSPDGKSVVFET----LGKLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRTIVFVS 446 Query: 366 FSGEKF-------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 ++ A G + KD ++ + + AP +SP G++++F R++ G S Sbjct: 447 WTDAGLGRLRTVPAAGGVGKD-----VIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSGR 501 Query: 419 YSID 422 +S D Sbjct: 502 WSQD 505 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 32/209 (15%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-AS 308 P RI + PRFS +GKR + + +I+ ++L ++T F ++ S Sbjct: 104 PTRIAEGLAYDQQPRFSPDGKRIAFTSDRGGGDNIWVMNLDGGDKRQVTKEEFRLLNQPS 163 Query: 309 YSPDSSQIV----FESDRE---GKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGD 359 +SPD IV F + R G+ +Y + G Q KR S+ + +P+++ G Sbjct: 164 WSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGK 223 Query: 360 LIAFTK--FSGEKFAIGVMKKDGSQERLLVEDSNLQA---------------PTWSPSGR 402 + +T+ G F +D + +E +L+ PT SP G+ Sbjct: 224 SVFYTRNVTPGPIFE---YAQDSNTALFDIERYDLETGEVTTAVSGLGGSVRPTPSPDGK 280 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + F R++ T SKLY DL E I Sbjct: 281 KIAFVRRE--RTKSKLYVKDLTSGEERKI 307 >gi|238507612|ref|XP_002385007.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220688526|gb|EED44878.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 647 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 41/227 (18%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P + ++ R P+ ++ A D + ++ ++R D FS Sbjct: 47 PGKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFD-------------YHASFSP 93 Query: 268 NGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG- 324 +G+ + ++ D D+Y + E+L T + + SPD+S++ + S G Sbjct: 94 DGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAWVSTANGY 153 Query: 325 KEQLYVMQSNGSDQKRISQ--------DKEASYFDPVWSPQGDLIAF-----TKFSG--- 368 ++VM +Q+ ++ K YF P WSP G+ IAF T++ G Sbjct: 154 TTNVWVMDLKTGEQRNLTNLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGN 213 Query: 369 -------EKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIF 406 ++ ++ V++ DG+ R + E +L +P WSP G +IF Sbjct: 214 GTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWSPDGSRIIF 260 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 65/307 (21%), Positives = 117/307 (38%), Gaps = 86/307 (28%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY----DDEDILRVYLM 242 G + L V + DG+N R L + + + FSP+ Q + + + + D+ R Sbjct: 59 GPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRAD 118 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + +++ + +L+P S K A +S +++ +DL++ LTN Sbjct: 119 GSGLEKLVATSSVEDAGVLSPDAS---KVAWVSTANGYTTNVWVMDLKTGEQRNLTNLEG 175 Query: 303 IN---------ISASYSPDSSQIVFESDRE----------GKEQ-----LYVMQSNGSDQ 338 + S+SPD I F SDR G E +YV++ +G+D Sbjct: 176 VKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDF 235 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---------------------FA----- 372 ++I+ + S P WSP G I F + + E FA Sbjct: 236 RKIASREGWSLGSPRWSPDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDR 295 Query: 373 --------------------IGVMKKDGSQERL---------LVEDSNLQAPTWSPSGRS 403 IG + K GS E + V + +++P+WSP G+S Sbjct: 296 IQHTNGTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAESSTGTVINGTMRSPSWSPDGKS 355 Query: 404 LIFSRKK 410 +++ + + Sbjct: 356 VVYEKSE 362 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 23/162 (14%) Query: 269 GKRALISVQK--DEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQIVFESDR--E 323 GK+ ++ + + + ++Y ++ SN + L N + AS+SPD I F S+R + Sbjct: 48 GKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGD 107 Query: 324 GKEQLYVMQSNGSDQKRI---SQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 G LY +++GS +++ S ++A V SP +A+ + +G + VM Sbjct: 108 GNSDLYRCRADGSGLEKLVATSSVEDAG----VLSPDASKVAWVSTANGYTTNVWVMDLK 163 Query: 380 GSQERLLVEDSNLQA----------PTWSPSGRSLIFSRKKD 411 ++R L ++ P+WSP G + FS ++ Sbjct: 164 TGEQRNLTNLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRN 205 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 65/292 (22%), Positives = 109/292 (37%), Gaps = 86/292 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 S+ V+ DG + R + L PR+SP+ ++ + E+ + P+ Sbjct: 224 SVYVIRPDGTDFRKIASREGWSLGSPRWSPDGSRIIFYEITTENTWDAH--------RPE 275 Query: 252 RIGNFRSMILAPRFSS--------NGKRALISVQKDEAMDI-YSVDLQSN-----ATERL 297 + + S I++ F++ NG +S Q A +I Y + S+ E Sbjct: 276 SVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAESS 335 Query: 298 TNTLFINI--SASYSPDSSQIVFESD----REGKEQLY---------------------- 329 T T+ S S+SPD +V+E R +++LY Sbjct: 336 TGTVINGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQGR 395 Query: 330 --------------VMQSNGSDQ---------KRISQDKE----ASYFDPVWSPQGDLIA 362 M+ +G DQ IS + A F P WSP G+ IA Sbjct: 396 LAITQKQLGNSSIVTMRPDGLDQTLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIA 455 Query: 363 F-------TKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIF 406 F ++ +G+ + I K DGS +L + N P++S GR L++ Sbjct: 456 FGIGAWFQSRATGKGY-IARAKADGSYHEILTNGTINAGFPSYSLDGRYLVY 506 >gi|116626608|ref|YP_828764.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229770|gb|ABJ88479.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 638 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 26/199 (13%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 F+SR L V + +G L +++ DG + LT F P FSP+ ++ Y T+ Sbjct: 442 FHSRFLKVGDRAETGA---RLAIVNADGTGLTELTAEPGNNAF-PSFSPDGKRFVYRTFT 497 Query: 233 DEDI-LRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++ LR+ ++T+ + R NF P +S G S Q + A +IY++ Sbjct: 498 EDGYGLRIMNLETKTGKILTRQYDNF------PLWSPRGDLITFSRQIEGAYEIYTIKPD 551 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKE-------------QLYVMQSNGSD 337 ++ +RLT T + ++SPD IVF S R G + +++VM+ +G+ Sbjct: 552 GSSLKRLTFTKGNDAHMAWSPDGEYIVFTSSRMGFKDEVAYTDAPQPYGEIFVMRYDGTG 611 Query: 338 QKRISQDKEASYFDPVWSP 356 ++++ D + P W P Sbjct: 612 VEQLT-DNQWEEGTPAWQP 629 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 V+ LT N S+SPD + V+ + E L +M K +++ Sbjct: 462 VNADGTGLTELTAEPGNNAFPSFSPDGKRFVYRTFTEDGYGLRIMNLETKTGKILTRQ-- 519 Query: 347 ASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRS 403 +D P+WSP+GDLI F++ + I +K DGS +RL N WSP G Sbjct: 520 ---YDNFPLWSPRGDLITFSRQIEGAYEIYTIKPDGSSLKRLTFTKGNDAHMAWSPDGEY 576 Query: 404 LIFSRKKDG 412 ++F+ + G Sbjct: 577 IVFTSSRMG 585 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 12/133 (9%) Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + G+ L+V S+GSD+ + + Y DP W+P G I FT + + DGS Sbjct: 59 QPGQLGLFVAASDGSDEHPLLASADTDY-DPAWAPDGGSIVFTSERNGSADLFRVNPDGS 117 Query: 382 QERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA--- 435 + L D QA T+S + L F + G T + L+++DL GR L + P Sbjct: 118 GLKQLTADPAYDDQA-TFSSDSKQLAFVSTRGGGT-ANLWTMDLVTGRARALTSGPGGDF 175 Query: 436 ---YASDPQWVGF 445 ++ D +W+ F Sbjct: 176 RPSWSPDGKWIAF 188 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 17/152 (11%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKF 366 +++PD IVF S+R G L+ + +GS K+++ D +Y D +S +AF Sbjct: 89 AWAPDGGSIVFTSERNGSADLFRVNPDGSGLKQLTADP--AYDDQATFSSDSKQLAFVST 146 Query: 367 SGEKFA-IGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG--------- 415 G A + M + R L P+WSP G+ + FS +D Sbjct: 147 RGGGTANLWTMDLVTGRARALTSGPGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWERL 206 Query: 416 --SKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 S +Y I +G + + + + P+W+G Sbjct: 207 QLSDIYVIRPDGSGLKKITKSGNFCGSPKWMG 238 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 35/182 (19%) Query: 265 FSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 FSS+ K+ A +S + +++++DL + LT+ + S+SPD I F S R+ Sbjct: 134 FSSDSKQLAFVSTRGGGTANLWTMDLVTGRARALTSGPGGDFRPSWSPDGKWIAFSSGRD 193 Query: 324 GK-------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD---LIAFTKFS 367 +YV++ +GS K+I++ P W GD +IA+ + Sbjct: 194 NPVPFASGRWERLQLSDIYVIRPDGSGLKKITKSGNFC-GSPKW--MGDSSHVIAYCMTA 250 Query: 368 GEKFAIGVMKKD-GSQERLLVEDSNLQA-------------PTWSPSGRSLIFSRKKDGD 413 + A D G+ RL+ D+ A P+W P G + RK D Sbjct: 251 EQTLANRRASPDPGNDTRLVSIDTGTAASTELNTGPGVKINPSWLP-GNETGYIRKDTAD 309 Query: 414 TG 415 G Sbjct: 310 PG 311 >gi|160873141|ref|YP_001552457.1| amidohydrolase [Shewanella baltica OS195] gi|160858663|gb|ABX47197.1| amidohydrolase [Shewanella baltica OS195] gi|315265366|gb|ADT92219.1| amidohydrolase [Shewanella baltica OS678] Length = 1062 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMNADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 Q+ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 QETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDQK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + + P WS G I FT + Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKSL-PDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + + V+ K G ++L E PT+SP G +++ + + G+ + Sbjct: 426 NDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTQGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ I+ Y + Sbjct: 486 LYKVDIKGKQNMKISADGYQA 506 >gi|57168719|ref|ZP_00367851.1| colicin tolerance-like protein (tolB) [Campylobacter coli RM2228] gi|57020000|gb|EAL56680.1| colicin tolerance-like protein (tolB) [Campylobacter coli RM2228] Length = 345 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 10/195 (5%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D R ++A K + + M++A S +G + L+++ Sbjct: 121 PKWGNKEQSIFYYTAYDHDRPTLYRYDLRTNKASKILAS-GGMVVASDVSLDGSKLLVTM 179 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYVMQ-SN 334 + D+Y DL S +LTN I+++ ++ D S+ VF SDR G +++ +N Sbjct: 180 APKDQPDVYLYDLNSKNLTQLTNYSGIDVNGNFIGVDDSKFVFVSDRLGYPNIFIQNLNN 239 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDSN 391 GS ++ + K S S D + ++ + F I +M + + R + Sbjct: 240 GSAEQAVFHGKNNS----AVSTYKDFLVYSSREPNQVGVFNIYLMSINSTGIRQFTANGK 295 Query: 392 LQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 296 NLFPRFSSDGGSIVF 310 >gi|16124371|ref|NP_418935.1| hypothetical protein CC_0116 [Caulobacter crescentus CB15] gi|13421223|gb|AAK22103.1| hypothetical protein CC_0116 [Caulobacter crescentus CB15] Length = 1096 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + R+ L + +SPD +I F SDR G + ++VM +G D+++++ Sbjct: 74 DIYTMPITGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRGGGDNIWVMNLDGGDKRQVT 133 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQ------ERLLVE 388 +++ P WSP G I K +GE + V G Q E+L E Sbjct: 134 KEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEQLQKE 193 Query: 389 DSNLQAPTWSPSGRSLIFSR 408 L P ++ G+S+ ++R Sbjct: 194 ---LGEPIYAADGKSVFYTR 210 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 17/124 (13%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTK 365 AS SPD +VFE+ +L++ + G + +R +S D++A P WS G I F Sbjct: 372 ASVSPDGKSVVFET----LGKLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRTIVFVS 427 Query: 366 FSGEKF-------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 ++ A G + KD ++ + + AP +SP G++++F R++ G S Sbjct: 428 WTDAGLGRLRTVPAAGGVGKD-----VIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSGR 482 Query: 419 YSID 422 +S D Sbjct: 483 WSQD 486 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 32/209 (15%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-AS 308 P RI + PRFS +GKR + + +I+ ++L ++T F ++ S Sbjct: 85 PTRIAEGLAYDQQPRFSPDGKRIAFTSDRGGGDNIWVMNLDGGDKRQVTKEEFRLLNQPS 144 Query: 309 YSPDSSQIV----FESDRE---GKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGD 359 +SPD IV F + R G+ +Y + G Q KR S+ + +P+++ G Sbjct: 145 WSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGK 204 Query: 360 LIAFTK--FSGEKFAIGVMKKDGSQERLLVEDSNLQA---------------PTWSPSGR 402 + +T+ G F +D + +E +L+ PT SP G+ Sbjct: 205 SVFYTRNVTPGPIFE---YAQDSNTALFDIERYDLETGEVTTAVSGLGGSVRPTPSPDGK 261 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + F R++ T SKLY DL E I Sbjct: 262 KIAFVRRE--RTKSKLYVKDLTSGEERKI 288 >gi|169785140|ref|XP_001827031.1| hypothetical protein AOR_1_786034 [Aspergillus oryzae RIB40] gi|83775778|dbj|BAE65898.1| unnamed protein product [Aspergillus oryzae] Length = 647 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 41/227 (18%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P + ++ R P+ ++ A D + ++ ++R D FS Sbjct: 47 PGKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFD-------------YHASFSP 93 Query: 268 NGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG- 324 +G+ + ++ D D+Y + E+L T + + SPD+S++ + S G Sbjct: 94 DGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAWVSTANGY 153 Query: 325 KEQLYVMQSNGSDQKRISQ--------DKEASYFDPVWSPQGDLIAF-----TKFSG--- 368 ++VM +Q+ ++ K YF P WSP G+ IAF T++ G Sbjct: 154 TTNVWVMDLKTGEQRNLTSLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGN 213 Query: 369 -------EKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIF 406 ++ ++ V++ DG+ R + E +L +P WSP G +IF Sbjct: 214 GTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWSPDGSRIIF 260 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/307 (20%), Positives = 117/307 (38%), Gaps = 86/307 (28%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY----DDEDILRVYLM 242 G + L V + DG+N R L + + + FSP+ Q + + + + D+ R Sbjct: 59 GPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRAD 118 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + +++ + +L+P S K A +S +++ +DL++ LT+ Sbjct: 119 GSGLEKLVATSSVEDAGVLSPDAS---KVAWVSTANGYTTNVWVMDLKTGEQRNLTSLEG 175 Query: 303 IN---------ISASYSPDSSQIVFESDRE----------GKEQ-----LYVMQSNGSDQ 338 + S+SPD I F SDR G E +YV++ +G+D Sbjct: 176 VKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDF 235 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---------------------FA----- 372 ++I+ + S P WSP G I F + + E FA Sbjct: 236 RKIASREGWSLGSPRWSPDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDR 295 Query: 373 --------------------IGVMKKDGSQERL---------LVEDSNLQAPTWSPSGRS 403 IG + K GS E + V + +++P+WSP G+S Sbjct: 296 IQHTNGTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAESSTGTVINGTMRSPSWSPDGKS 355 Query: 404 LIFSRKK 410 +++ + + Sbjct: 356 VVYEKSE 362 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 110/292 (37%), Gaps = 86/292 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 S+ V+ DG + R + L PR+SP+ ++ + E+ + P+ Sbjct: 224 SVYVIRPDGTDFRKIASREGWSLGSPRWSPDGSRIIFYEITTENTWDAH--------RPE 275 Query: 252 RIGNFRSMILAPRFSS--------NGKRALISVQKDEAMDI-YSVDLQSN-----ATERL 297 + + S I++ F++ NG +S Q A +I Y + S+ E Sbjct: 276 SVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAESS 335 Query: 298 TNTLFINI--SASYSPDSSQIVFESD----REGKEQLY---------------------- 329 T T+ S S+SPD +V+E R +++LY Sbjct: 336 TGTVINGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQGR 395 Query: 330 --------------VMQSNGSDQK---------RISQDKE----ASYFDPVWSPQGDLIA 362 M+ +G DQK IS + A F P WSP G+ IA Sbjct: 396 LAITQKQLGNSSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIA 455 Query: 363 F-------TKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIF 406 F ++ +G+ + I K DGS +L + N P++S GR L++ Sbjct: 456 FGIGAWFQSRATGKGY-IARAKADGSYHEILTNGTINAGFPSYSLDGRYLVY 506 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 23/162 (14%) Query: 269 GKRALISVQK--DEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQIVFESDR--E 323 GK+ ++ + + + ++Y ++ SN + L N + AS+SPD I F S+R + Sbjct: 48 GKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGD 107 Query: 324 GKEQLYVMQSNGSDQKRI---SQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 G LY +++GS +++ S ++A V SP +A+ + +G + VM Sbjct: 108 GNSDLYRCRADGSGLEKLVATSSVEDAG----VLSPDASKVAWVSTANGYTTNVWVMDLK 163 Query: 380 GSQERLLVEDSNLQA----------PTWSPSGRSLIFSRKKD 411 ++R L ++ P+WSP G + FS ++ Sbjct: 164 TGEQRNLTSLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRN 205 >gi|152998566|ref|YP_001364247.1| amidohydrolase [Shewanella baltica OS185] gi|151363184|gb|ABS06184.1| amidohydrolase [Shewanella baltica OS185] Length = 1062 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMDADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 Q+ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 QETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDQK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 15/107 (14%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 E ++ + SP G I F G+ + I V G + + L + Q P +SP G+ + Sbjct: 51 EGTWMNLSVSPDGKHIVF-DLLGDIYQIPVT---GGEAKPLAQGIAWQMQPVYSPDGKHI 106 Query: 405 IFSRKKDGDTGSKLYSIDLNGRN------ET--LINTPAYASDPQWV 443 F+ DGD G ++ +D +G N ET L+N+PA++ D Q++ Sbjct: 107 AFT--SDGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYL 151 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + + P WS G I FT + Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKSL-PDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + + V+ K G ++L E PT+SP G +++ + G+ + Sbjct: 426 NDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTHGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ I+ Y + Sbjct: 486 LYKVDIKGKQNKKISADGYQA 506 >gi|86158652|ref|YP_465437.1| hypothetical protein Adeh_2230 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775163|gb|ABC82000.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 1042 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 43/240 (17%) Query: 191 NSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 N L +MD GA R LT P Q +P +S + ++AYA+ D +Y++D Sbjct: 341 NRLWLMDVGGAP-RPLTDGPYYAQ---DPAWSRDGTRIAYAS-DKAGTADLYVLDVATG- 394 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +R+ + +AP +S +G R +D+A + +DL S A ++ LF + Sbjct: 395 AEQRVTSLPGAEVAPAWSPDGGRLAF---QDQAGATHVLDLASGAVRQIVAPLFAPGRPT 451 Query: 309 YSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDKEASYFD---------P 352 +S D + + REG Q+ + + ++ +EA+ F+ P Sbjct: 452 WSADGRTVALAALKPYTRRFREGTSQILTVDV----ESGATRYQEAAPFESLSTRGDDGP 507 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD------GSQERLLVEDSNLQAPTWSPSGRSLIF 406 VWSP G +AF S + VM D GS R+ E ++ APTWS R L++ Sbjct: 508 VWSPDGTALAFVMQS----TLWVMPVDAAGRAAGSPVRITSEPTD--APTWSGDSRRLLY 561 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%) Query: 278 KDEAMDI----YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +D MD+ +S+ RLT+ L +SP ++ F++ G ++ M+ Sbjct: 55 RDLVMDLQGVLWSLPRGGGEARRLTDGLLEPARPDFSPRGDRVAFQAYAGGTFHIWTMRP 114 Query: 334 NGSDQKRISQ----DKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDGSQERLL 386 +G+D ++++ D+E P +SP G IAF+ F G V G+ R Sbjct: 115 DGTDVRQLTSGHGDDRE-----PRFSPDGTRIAFSSDRAFEGSYDVWVVDVASGALTRWT 169 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++ P W+P G + F G TG+ + ++D G TL PA A Sbjct: 170 EAPADEFEPAWTPDGGEIAFVSGA-GSTGTAIEAVDSTGARRTLATAPAGA 219 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 10/152 (6%) Query: 260 ILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I+AP S +G R + ++ + MD+ A LT+ + ++S D ++I + Sbjct: 323 IVAPALSPDGTRVVFQALNRLWLMDV------GGAPRPLTDGPYYAQDPAWSRDGTRIAY 376 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD+ G LYV+ ++R++ A P WSP G +AF +G + + Sbjct: 377 ASDKAGTADLYVLDVATGAEQRVTSLPGAE-VAPAWSPDGGRLAFQDQAGATHVLDLAS- 434 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 G+ +++ PTWS GR++ + K Sbjct: 435 -GAVRQIVAPLFAPGRPTWSADGRTVALAALK 465 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 6/149 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS G R I+++ +LT+ + +SPD ++I F SDR Sbjct: 88 PDFSPRGDRVAFQAYAGGTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDR 147 Query: 323 --EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKD 379 EG ++V+ R ++ A F+P W+P G IAF +G AI + Sbjct: 148 AFEGSYDVWVVDVASGALTRWTE-APADEFEPAWTPDGGEIAFVSGAGSTGTAIEAVDST 206 Query: 380 GSQERLLVEDSN--LQAPTWSPSGRSLIF 406 G++ L + L +P+ SP G L + Sbjct: 207 GARRTLATAPAGARLNSPSISPDGAHLAW 235 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 31/210 (14%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P SP+ +V + + + R++LMD + AP+ + + P +S +G R Sbjct: 323 IVAPALSPDGTRVVF-----QALNRLWLMD--VGGAPRPLTDGPYYAQDPAWSRDGTRIA 375 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + K D+Y +D+ + A +R+T+ ++ ++SPD ++ F+ D+ G + + S Sbjct: 376 YASDKAGTADLYVLDVATGAEQRVTSLPGAEVAPAWSPDGGRLAFQ-DQAGATHVLDLAS 434 Query: 334 NGSDQKRISQDKEASYFD---PVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGS- 381 Q A F P WS G +A G + V + G+ Sbjct: 435 GAVRQ------IVAPLFAPGRPTWSADGRTVALAALKPYTRRFREGTSQILTVDVESGAT 488 Query: 382 --QERLLVEDSNLQ---APTWSPSGRSLIF 406 QE E + + P WSP G +L F Sbjct: 489 RYQEAAPFESLSTRGDDGPVWSPDGTALAF 518 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N++ + SPD +V D +G L+ + G + +R++ D P +SP+GD +AF Sbjct: 45 NVAVTASPDGRDLVM--DLQGV--LWSLPRGGGEARRLT-DGLLEPARPDFSPRGDRVAF 99 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++G F I M+ DG+ R L + + P +SP G + FS + + ++ +D Sbjct: 100 QAYAGGTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDRAFEGSYDVWVVD 159 Query: 423 L-NGRNETLINTPAYASDPQWV 443 + +G PA +P W Sbjct: 160 VASGALTRWTEAPADEFEPAWT 181 >gi|77360114|ref|YP_339689.1| hypothetical protein PSHAa1171 [Pseudoalteromonas haloplanktis TAC125] gi|76875025|emb|CAI86246.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 1060 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + +LT+ + + +SP+ I F SD+ G + +++M NG +Q ++ Sbjct: 70 DIYTMPISGGNATQLTSDIAWQMQPRFSPNGKHIAFTSDQGGGDNIWIMDLNGENQSAVT 129 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDS-NLQ 393 + P WSP GD L+A F+ GE + G Q +D +L Sbjct: 130 DETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRADDQKDLG 189 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS Sbjct: 190 EPMFSPDGRYVYFSH 204 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PRFS NGK + + +I+ +DL +T+ F + S ++SPD +V Sbjct: 92 MQPRFSPNGKHIAFTSDQGGGDNIWIMDLNGENQSAVTDETFRLLNSPAWSPDGDYLVAR 151 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFS--GEK 370 F + R G ++++ G ++++ D + +P++SP G + F+ + G+ Sbjct: 152 KHFTASRSLGAGEVWLYHKAGGKGVQLTKRADDQKDLGEPMFSPDGRYVYFSHDATPGKT 211 Query: 371 F------AIGVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K + G E ++ PT SP G+ L + ++ D T L Sbjct: 212 FHYSKDSVAGIYKIKRYDRETGEIETVISGMGGAIRPTPSPDGKKLAYIKRDDFQTSLYL 271 Query: 419 YSI 421 Y + Sbjct: 272 YDL 274 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 259 MILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLT-NTLFINISASYSPDSSQI 316 M+ + S +G+ A+ EA+ IY DL+S +RLT T + A YS D +I Sbjct: 362 MLRNVQISPDGETAIF-----EALGHIYKRDLESGKIKRLTKQTDHYELFAQYSRDGKKI 416 Query: 317 VFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 V+ + D + Q+ V+ ++ I++ + Y +P +SP G + + K +G Sbjct: 417 VYTTWDDNEQGQVRVVSASSGRGDTITE-QPGKYVEPTFSPDGKTVVYRKATG 468 >gi|332142931|ref|YP_004428669.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143024|ref|YP_004428762.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552953|gb|AEA99671.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553046|gb|AEA99764.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] Length = 1111 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V++ LT NI S SPD I F SD++G ++VM +GS+ ++++ Sbjct: 82 DLYKVNMNGGDATPLTQDFAWNIHPSISPDGKHIAFISDKDGLSNVWVMDIDGSNLRQVT 141 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 ++K P WSP G+ + TK Sbjct: 142 KEKSNLIHSPKWSPDGEYLVVTK 164 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D I+ LT D + PRFS + +K+ Y T+DD+D+ V ++ R + K Sbjct: 398 LYVRDVKSGKIKRLTKQNDHDEYYPRFSNDGKKIVYTTWDDQDLGTVRVVSARGGKG-KV 456 Query: 253 IGNFRSMILAPRFSSNGKRA---------LISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 I + P FS++G++ L+ IY DL+ ++ ++T+ + Sbjct: 457 ITQQPGHYIEPSFSADGEKVVFRKFTGGFLLDPTYSVEPGIYVADLEEDSVSKVTDNGY- 515 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQ 332 +A ++ ++ F ++ G E Y Q Sbjct: 516 --NAHFAGGDDRVYF-TESAGGEAYYETQ 541 >gi|217971231|ref|YP_002355982.1| amidohydrolase [Shewanella baltica OS223] gi|217496366|gb|ACK44559.1| amidohydrolase [Shewanella baltica OS223] Length = 1062 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMDADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 Q+ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 QETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDQK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + + P WS G I FT + Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKSL-PDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + + V+ K G ++L E + PT+SP G +++ + + G+ + Sbjct: 426 NDQDQGTVQVISAKGGKPKQLTSEPGKYEEPTFSPDGELVVYRKTQGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ I+ Y + Sbjct: 486 LYKVDIKGKQNKKISADGYQA 506 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 15/107 (14%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 E ++ + SP G I F G+ + I V G + + L + Q P +SP G+ + Sbjct: 51 EGTWMNLSVSPDGKNIVF-DLLGDIYQIPVT---GGEAKPLAQGIAWQMQPVYSPDGKHI 106 Query: 405 IFSRKKDGDTGSKLYSIDLNGRN------ET--LINTPAYASDPQWV 443 F+ DGD G ++ +D +G N ET L+N+PA++ D Q++ Sbjct: 107 AFT--SDGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYL 151 >gi|255013144|ref|ZP_05285270.1| periplasmic component of the Tol biopolymer transport system [Bacteroides sp. 2_1_7] Length = 260 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 266 SSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S++GK+ IS ++D IY++ + RL L + +SPD Q+ + ++R Sbjct: 54 SADGKQIAISNGTKEDGRSRIYTLPFEG-GVPRLITPLGPSYLHGWSPDGKQLAYCAERN 112 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +YV+ + G ++KR++ E P +SP G I F + MK DGS++ Sbjct: 113 GNFDVYVIPALGGEEKRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 171 Query: 384 RLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + E N P SP G+ ++F GD + L +N L PA +P+ Sbjct: 172 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQH---LANKNVELRLMPAEGGEPK 228 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK+ +++ D+Y + +RLT ++ YSP I F S R G Sbjct: 98 WSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTG 157 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFA-----I 373 Q++ M+++GS+Q +++ D+ + + P SP G I F ++ G+ A + Sbjct: 158 LMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVEL 217 Query: 374 GVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 +M +G + + LV+ + +W+P + F Sbjct: 218 RLMPAEGGEPKTLVKLFGGQGTINVNSWAPDSKRFAF 254 >gi|126172273|ref|YP_001048422.1| WD40 domain-containing protein [Shewanella baltica OS155] gi|125995478|gb|ABN59553.1| WD40 domain protein beta Propeller [Shewanella baltica OS155] Length = 445 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVSGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMDADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 Q+ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 QETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDQK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 15/107 (14%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 E ++ + SP G I F G+ + I V G + + L + Q P +SP G+ + Sbjct: 51 EGTWMNLSVSPDGKHIVF-DLLGDIYQIPV---SGGEAKPLAQGIAWQMQPVYSPDGKHI 106 Query: 405 IFSRKKDGDTGSKLYSIDLNGRN------ET--LINTPAYASDPQWV 443 F+ DGD G ++ +D +G N ET L+N+PA++ D Q++ Sbjct: 107 AFT--SDGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYL 151 >gi|221632297|ref|YP_002521518.1| acyl-peptide hydrolase [Thermomicrobium roseum DSM 5159] gi|221156948|gb|ACM06075.1| acylamino-acid-releasing enzyme (ec) (acyl-peptide hydrolase) (aph) [Thermomicrobium roseum DSM 5159] Length = 657 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 57/270 (21%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEP----RFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L V+ R+G R LT EP +SP+ Q++A T R + ++ Sbjct: 88 DQLWVIPRNGGEARQLT-----NFVEPVTGFAWSPDGQRIAVVT-------RAQQAEGKV 135 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D + R R+ +G+R + ++ I+ VDL++ ER T+ + + Sbjct: 136 DPETDVVRLTRL-----RYRFDGQRGFLHERRSH---IWVVDLRTGTLERATDGDWDDDW 187 Query: 307 ASYSPDSSQIVFESDR-EGKE-----QLYVMQSNGS----DQKRISQDKEASYFDPVWSP 356 ++SPD SQ+VF S+R E +E +L++++ + + D ++ A++ P WSP Sbjct: 188 PAWSPDGSQLVFTSNRTEEREWNAASELWLLRFDAAGRTVDLSCVTGGPSAAFGRPSWSP 247 Query: 357 QGDLIA----FTKFSGEKFA--IGVMKKDGSQERLL-------VEDSNLQ---APT---- 396 G LIA F ++G + VM DG++ L +EDS L P+ Sbjct: 248 DGRLIAAVGHFESWAGSARHKRLWVMTPDGNERWNLSADFDATLEDSLLTDAFGPSKPGL 307 Query: 397 -WSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 WSP GR + + G +LY ++G Sbjct: 308 LWSPDGRWIFTQVSEQGAV--RLYRFPVSG 335 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 45/187 (24%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 I+ + R T+ + +SP ++ F SDR G +QL+V+ NG + ++++ Sbjct: 46 IWLARTDGSPPRRFTSGTHRDTMPRWSPSGEELAFLSDRTGSDQLWVIPRNGGEARQLT- 104 Query: 344 DKEASYFDPV----WSPQGDLIAFT------------------------KFSGEKFAIGV 375 ++ +PV WSP G IA +F G++ + Sbjct: 105 ----NFVEPVTGFAWSPDGQRIAVVTRAQQAEGKVDPETDVVRLTRLRYRFDGQRGFLHE 160 Query: 376 MK--------KDGSQERLLVEDSNLQAPTWSPSGRSLIF----SRKKDGDTGSKLYSIDL 423 + + G+ ER D + P WSP G L+F + +++ + S+L+ + Sbjct: 161 RRSHIWVVDLRTGTLERATDGDWDDDWPAWSPDGSQLVFTSNRTEEREWNAASELWLLRF 220 Query: 424 NGRNETL 430 + T+ Sbjct: 221 DAAGRTV 227 >gi|149182429|ref|ZP_01860905.1| YuxL [Bacillus sp. SG-1] gi|148849892|gb|EDL64066.1| YuxL [Bacillus sp. SG-1] Length = 651 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 47/195 (24%) Query: 263 PRFSSNGKRA-LISVQKDEAMD-----IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S NG+ A + + DE + +Y +D+++ + + T N S +SPD ++ Sbjct: 15 PKISPNGEEAAYVITEMDEETNKYISNLYHLDIKTGKSTQWTFGKNRNTSPRWSPDGGKV 74 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----------- 365 VF SDR K QL+++ +G + ++++ + PVWSP G +AF+ Sbjct: 75 VFVSDRSDKSQLFLLLRSGGEARQLTFCPNGAS-QPVWSPCGKKVAFSTALMEGETLTEG 133 Query: 366 ------------------------FSGEKFAIGVMKKDGSQERLLVE---DSNLQAPTWS 398 F+G++ I V+ + +L+ E D +LQ +WS Sbjct: 134 KEEDKHPQPLEVTTMKYKSDDSGFFNGKRNHIAVIDVETLDMKLITEGEIDYSLQ--SWS 191 Query: 399 PSGRSLIFSRKKDGD 413 P+GR + + K D Sbjct: 192 PNGRYIAYGADKSAD 206 >gi|21228491|ref|NP_634413.1| hypothetical protein MM_2389 [Methanosarcina mazei Go1] gi|20906975|gb|AAM32085.1| conserved protein [Methanosarcina mazei Go1] Length = 771 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 27/207 (13%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDD 233 SRI ++S S +G + L ++ DG+N + + + + ++P+ +A+ A Y + Sbjct: 33 SRIAYIS-SDHNG--SDRLVTLNPDGSNEQIVASFAE--ISALAWAPDSSGMAFNAAYSE 87 Query: 234 EDILRVYLMDTRIDRAP--------KRIGNFRSMILAPRFSSNGKRALIS--------VQ 277 + +YL D ++I +++S + +P +G R L S Sbjct: 88 DGQTGIYLADLESSEPVFLVRGEIRQQIQSWQSEVWSP----DGSRILYSSNENGNSDTN 143 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 ++ DIYSV+ + +LT+ + S +SPD S+I+F SDR G +++M SNG Sbjct: 144 ENGNSDIYSVNTDGSEKIQLTDDNSKDYSPCFSPDGSKIIFISDRTGHSSIWIMSSNGDK 203 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFT 364 ++ +++ E + D W+P G IAF+ Sbjct: 204 EEELTEGFEGIH-DFSWNPNGQKIAFS 229 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 307 ASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++SPD S+I + SD G ++L + +GS+++ ++ E S W+P +AF Sbjct: 26 CAWSPDGSRIAYISSDHNGSDRLVTLNPDGSNEQIVASFAEISAL--AWAPDSSGMAFNA 83 Query: 366 FSGEKFAIGVMKKD--GSQERLLVEDS------NLQAPTWSPSGRSLIFSRKKDGDT--- 414 E G+ D S+ LV + Q+ WSP G +++S ++G++ Sbjct: 84 AYSEDGQTGIYLADLESSEPVFLVRGEIRQQIQSWQSEVWSPDGSRILYSSNENGNSDTN 143 Query: 415 ---GSKLYSIDLNG 425 S +YS++ +G Sbjct: 144 ENGNSDIYSVNTDG 157 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%) Query: 331 MQSNGSDQKRISQDKEASYFDPV----WSPQGDLIAF--TKFSGEKFAIGVMKKDGSQER 384 M S+GSD + + F + WSP G IA+ + +G + + DGS E+ Sbjct: 1 MNSDGSDNFELVKKSYGRNFSGISGCAWSPDGSRIAYISSDHNGSDRLV-TLNPDGSNEQ 59 Query: 385 LLVEDSNLQAPTWSPSGRSLIF--SRKKDGDTGSKLYSIDL 423 ++ + + A W+P + F + +DG TG +Y DL Sbjct: 60 IVASFAEISALAWAPDSSGMAFNAAYSEDGQTG--IYLADL 98 >gi|332665829|ref|YP_004448617.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] gi|332334643|gb|AEE51744.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] Length = 1162 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIYS+ L ++LTN + + +SPD +I F SDR G E + + D +I+ Sbjct: 113 DIYSIPLAGGKAKQLTNGMAYDTHPKWSPDGKKIAFTSDRSGSENAWYIDFEKQDTVQIT 172 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSP 399 +D + W+P G+ + +K G + + KDG L+ E P + Sbjct: 173 KDNDQHVQSVEWTPDGNYLIVSK-GGRNLKLFMFHKDGGGGTQLIKTPETLKCIEPAFGK 231 Query: 400 SGRSLIFSRK 409 R + FSR+ Sbjct: 232 DSRYIWFSRR 241 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +P+ SP+ K+ + + R+Y+MD + +P+R+ N P +S +G Sbjct: 397 DPKISPDGSKLTFTVLN-----RLYVMDYP-NGSPRRLTNANHTEAMPIWSPDGASIAYV 450 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------------R 322 +++ IY V++ + A +LT + +++IVF Sbjct: 451 TWENKEGHIYKVNVATGANTKLTRNGATYYDLGWDAKTNRIVFNYSPAQVFEDAYSPFFS 510 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 E L + ++G D RI +K S +P + + I FSG K + + + DG+ Sbjct: 511 SPSENLAWISADGGDITRI--EKSNSRSNPHFVKADERIYL--FSGAKGLVSI-RWDGTD 565 Query: 383 ERLLVEDSNL 392 E++ ++ S + Sbjct: 566 EKVHLKVSGI 575 >gi|294497404|ref|YP_003561104.1| putative peptidase [Bacillus megaterium QM B1551] gi|294347341|gb|ADE67670.1| putative peptidase [Bacillus megaterium QM B1551] Length = 659 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%) Query: 260 ILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDS 313 + P+ S + K + +V++ + ++ ++ +DL++ T++LT N S +SPD Sbjct: 20 VYNPQISPDRKSVVYTVRETKKIENAYETQLFMLDLETKETKQLTYYKGNNHSPVWSPDG 79 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 I F SDR QLY++ + G + + ++ D E +PVWSP D I F+ GEK Sbjct: 80 KWIAFLSDRSQAVQLYLLAATGGEAEALT-DLEKGVSNPVWSPYSDEIMFSTKVGEK 135 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query: 310 SPDSSQIVFESDREGKE-------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD +V+ + RE K+ QL+++ + K+++ K ++ PVWSP G IA Sbjct: 26 SPDRKSVVY-TVRETKKIENAYETQLFMLDLETKETKQLTYYKGNNH-SPVWSPDGKWIA 83 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK 409 F + + ++ G + L + + + P WSP ++FS K Sbjct: 84 FLSDRSQAVQLYLLAATGGEAEALTDLEKGVSNPVWSPYSDEIMFSTK 131 >gi|127510948|ref|YP_001092145.1| amidohydrolase [Shewanella loihica PV-4] gi|126636243|gb|ABO21886.1| amidohydrolase [Shewanella loihica PV-4] Length = 1067 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + ++ + L + + YSPD I F SD +G + ++VM ++G+D + ++ Sbjct: 79 DIYQMPIEGGEAKPLAQGIAWQMQPVYSPDGKYIAFTSDEDGGDNIWVMNADGTDPRPVT 138 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEKFAIGVMK------KDGSQERLLV---EDSNL 392 ++ P WSP LI F+G + ++G + G+ +L E +L Sbjct: 139 KETFRLLNSPAWSPDSQYLIGRKHFTGSR-SLGAGEVWLYHVAGGTGVKLTERPNEQKDL 197 Query: 393 QAPTWSPSGRSLIFSR 408 P +SP GR + FS+ Sbjct: 198 GEPAYSPDGRYVYFSQ 213 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 30/168 (17%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T ++N+S S PD QIVF D G +Y M G + K ++Q A PV+SP Sbjct: 55 VTEGTWMNVSVS--PDGKQIVF--DLLG--DIYQMPIEGGEAKPLAQGI-AWQMQPVYSP 107 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKK---- 410 G IAFT I VM DG+ R + +++ L +P WSP + LI RK Sbjct: 108 DGKYIAFTSDEDGGDNIWVMNADGTDPRPVTKETFRLLNSPAWSPDSQYLI-GRKHFTGS 166 Query: 411 -------------DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 G TG KL + + PAY+ D ++V F Sbjct: 167 RSLGAGEVWLYHVAGGTGVKLTE---RPNEQKDLGEPAYSPDGRYVYF 211 >gi|149186900|ref|ZP_01865209.1| hypothetical protein ED21_22118 [Erythrobacter sp. SD-21] gi|148829409|gb|EDL47851.1| hypothetical protein ED21_22118 [Erythrobacter sp. SD-21] Length = 1112 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + R+ L I +SPD S+I F SDR G + +++M ++GS++++++ Sbjct: 115 DIYTMPVSGGTPTRIAEGLAWEIQPRFSPDGSRIAFISDRGGGDNIWLMNTDGSNKQQVT 174 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSN--- 391 + P WSP G I K +GE + V G Q LV+ ++ Sbjct: 175 MEDFRLLNQPSWSPDGRYIVAKKHFTTQRSAGTGEIWLYHVSGGGGVQ---LVKRASEAV 231 Query: 392 ---LQAPTWSPSGRSLIFSR 408 L P ++P G ++ ++R Sbjct: 232 QKELGEPIYAPDGNAIYYTR 251 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 AS SPD +VFES GK + + S+ + ++ IS ++ P WS GD IAF ++ Sbjct: 413 ASVSPDGRTVVFES--LGKLYVKPVGSDAAPRRLISGSDDSLELWPAWSRDGDRIAFVRW 470 Query: 367 SGEKFA-IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + I + G ER++ + + P +SP G +++F ++ G S YS Sbjct: 471 TDAGLGRIVTVDARGRNERVITRQQGHYAVPQFSPDGDTIVFEKRGGGFLTSPTYS---- 526 Query: 425 GRNETLINTPAYASDPQWV 443 NE + + A P+ V Sbjct: 527 -ENEGVYSVSASGGTPRLV 544 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 39/260 (15%) Query: 200 GANIRYLTPSRDQ-ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 GA +R + D+ + SP+ + +A++ D +Y M P RI + Sbjct: 81 GATMREVAIDTDEGTWMDVAVSPDGRTLAFSMLGD-----IYTMPVS-GGTPTRIAEGLA 134 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV 317 + PRFS +G R + +I+ ++ + +++T F ++ S+SPD IV Sbjct: 135 WEIQPRFSPDGSRIAFISDRGGGDNIWLMNTDGSNKQQVTMEDFRLLNQPSWSPDGRYIV 194 Query: 318 ----FESDRE---GKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGDLIAFTK--F 366 F + R G+ LY + G Q KR S+ + +P+++P G+ I +T+ Sbjct: 195 AKKHFTTQRSAGTGEIWLYHVSGGGGVQLVKRASEAVQKELGEPIYAPDGNAIYYTRNIT 254 Query: 367 SGEKFAIGVMKKDGSQ-----ERLLVEDSNLQA----------PTWSPSGRSLIFSRKKD 411 G F +D +Q ER ++ + P SP GRS+ F R +D Sbjct: 255 PGATFE---YAQDSTQGIFNIERYDIDTGEVTTAVGGYGGAVRPVPSPDGRSIAFVR-RD 310 Query: 412 GDTGSKLYSIDLNGRNETLI 431 D S+L+ DL+ E +I Sbjct: 311 KDQ-SQLWVKDLSTGEERMI 329 >gi|319953311|ref|YP_004164578.1| peptidase s41 [Cellulophaga algicola DSM 14237] gi|319421971|gb|ADV49080.1| peptidase S41 [Cellulophaga algicola DSM 14237] Length = 1085 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 11/152 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIVFESD 321 P S GKRA+ + DI++V ++ + +T T I A +SP +I + SD Sbjct: 307 PNISPTGKRAVF----EHRGDIFTVPKENGTWKNITKTSGIADRAPVWSPQGDKIAWFSD 362 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 G+ QL + +G +K YF P WSP G IA++ + I +M G Sbjct: 363 ATGEYQLVIANQDGEQKKSYKLPNNTFYFKPDWSPDGKNIAYSDTDYNIWIINLMT--GK 420 Query: 382 QERLLVED----SNLQAPTWSPSGRSLIFSRK 409 E++ + + PTWSP + + F ++ Sbjct: 421 AEKVATDSYAHPTRTMNPTWSPDSQWIAFPKQ 452 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ L RLT+ + +S D I F + +G +Y++ + G + KR Sbjct: 39 ANDLWKTPLSGGEAIRLTSNEGYESNPHFSKDGKTIAFTGEYDGNVDVYIIPATGGEPKR 98 Query: 341 ISQDKEASYFDPVWSPQGDLI 361 ++ A + + W+P G+++ Sbjct: 99 LTYHPSADFVE-GWTPDGEVL 118 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +GK + + D +D+Y + +RLT + ++PD +++F S R Sbjct: 65 PHFSKDGKTIAFTGEYDGNVDVYIIPATGGEPKRLTYHPSADFVEGWTPD-GEVLFRSGR 123 Query: 323 EGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 E K +LY + + GS I + A+Y + +S G IA+T + Sbjct: 124 ESKPTVTNKLYKVSAAGSFPTAIDIPR-AAYGE--FSKNGKYIAYTPIT 169 >gi|284036826|ref|YP_003386756.1| Periplasmic component of the Tol biopolymer transport system-like protein [Spirosoma linguale DSM 74] gi|283816119|gb|ADB37957.1| Periplasmic component of the Tol biopolymer transport system-like protein [Spirosoma linguale DSM 74] Length = 512 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 17/158 (10%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + K + + ++ DIYSV RLT ++ Y+PD I F S R G Sbjct: 342 WSPDKKTLVFTGSRNNEYDIYSVPSAGGPEVRLTEAKGLDDGPEYTPDGKYIYFNSSRTG 401 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------I 373 Q+Y M+++GS+Q+ I+ + +F P SP G I F F E+ + Sbjct: 402 TMQIYRMKADGSEQEAITNGEFHDWF-PHISPDGKWIIFLSFLKEEVKPDDHPFYKHVYL 460 Query: 374 GVMKKDGSQERLLVE-----DSNLQAPTWSPSGRSLIF 406 ++ GS + ++ + P+WSP + + F Sbjct: 461 RMLPISGSGQPKVIAYIYGGQGTINTPSWSPDSKRVAF 498 >gi|332530720|ref|ZP_08406649.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624] gi|332039810|gb|EGI76207.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624] Length = 638 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 43/223 (19%) Query: 265 FSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 FSS+G+ + + ++D ++Y ERLT++ ++ +A +SPD S++ F S R Sbjct: 71 FSSDGQWIVFTSERDGLGNSNLYRARADGTQVERLTDSPAVDDAAVFSPDGSKVAFVSTR 130 Query: 323 EG-KEQLYVMQSNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAF-----TKF 366 +G ++V+ + ++ Q+ + +F P WSP G +AF T++ Sbjct: 131 DGFLANIWVLDLQTRKLRNLTGIKGVQADDLQNSPSGFFRPSWSPDGQWLAFSSDRNTEW 190 Query: 367 SG----------EKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDT 414 G ++ +I V++ DG+ R + +D L +P WS G+ ++F T Sbjct: 191 KGHHDGAGWEHTQELSIYVIRVDGTGLRRVASRKDHCLGSPRWSGDGKRIVFYETLAEYT 250 Query: 415 ------------GSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 S++ S+D++ G P + PQ++G Sbjct: 251 YWVLRPDLLLKIDSQIVSVDVDSGARTVHTEGPGFKISPQYIG 293 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 16/146 (10%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQ 338 A +Y + + L ++ ++ +AS+S D IVF S+R+ G LY +++G+ Sbjct: 43 ASRLYIANADGSNERLLIDSGTLDYNASFSSDGQWIVFTSERDGLGNSNLYRARADGTQV 102 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVEDSNLQA--- 394 +R++ D A V+SP G +AF A I V+ + R L +QA Sbjct: 103 ERLT-DSPAVDDAAVFSPDGSKVAFVSTRDGFLANIWVLDLQTRKLRNLTGIKGVQADDL 161 Query: 395 ---------PTWSPSGRSLIFSRKKD 411 P+WSP G+ L FS ++ Sbjct: 162 QNSPSGFFRPSWSPDGQWLAFSSDRN 187 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 42/202 (20%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFESDREGKEQ 327 G+ L+ V++D + E+LT+ N SYS D ++VF E + Sbjct: 447 GRAKLMRVRRD-----------GSGLEQLTDDSIFNAGFPSYSADGKEVVFRIANEDPKS 495 Query: 328 -----LYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFS------GEKFAIGV 375 L V+ +RI+ A Y + P+WSP G I F + F + Sbjct: 496 ASLGGLAVLNLETRQIRRIT----AGYDNMPIWSPDGSRILFNRGVRNPNSIWSNFDLYT 551 Query: 376 MKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSID 422 ++ DGS +RL ++ P W+P G+ ++++ G +L+ +D Sbjct: 552 VRPDGSDLQRLTSHPASDGHPVWTPDGKQILYNSGMAGYRDEACHYDQTFQPYGQLFVMD 611 Query: 423 LNGRNETLINTPAYA-SDPQWV 443 +GRN+ I + S PQ+V Sbjct: 612 ADGRNKRQITDSIWEDSTPQYV 633 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 10/104 (9%) Query: 312 DSSQIVFESDREGKEQLY-VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA------FT 364 DSS + D + ++Y V + +G D + + ++F PVWSP G+ I FT Sbjct: 384 DSSVDIMRPDGSARRRVYDVSRQSGLDPVLVKRGLAGAFF-PVWSPDGEWIVFGVGEWFT 442 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIF 406 + + + +++DGS L +DS A P++S G+ ++F Sbjct: 443 QRGRGRAKLMRVRRDGSGLEQLTDDSIFNAGFPSYSADGKEVVF 486 >gi|260061328|ref|YP_003194408.1| WD40-like beta Propeller protein [Robiginitalea biformata HTCC2501] gi|88785460|gb|EAR16629.1| WD40-like Beta Propeller protein [Robiginitalea biformata HTCC2501] Length = 368 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 30/212 (14%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K + YD DI L +D+ G ++P+ G R + + + +++ Sbjct: 146 KYVWPVYDSFDIFVADLQGNIVDQLTDEPGYDAEATVSPQ----GDRIVFTSDRSGDLEL 201 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------------ 326 Y+++L + ++T+ L + A +SPD +QI+F + R E Sbjct: 202 YTMNLDGSDVRQITDELGYDGGAFFSPDGTQIIFRASRPETEAEIAEYKDLLSRGLVQPT 261 Query: 327 --QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKDG 380 +L++ ++GSD ++++ A++ P + P GD I F+ G F + ++ DG Sbjct: 262 EMELFICNADGSDLRQLTFLGNANW-SPFFHPDGDKILFSSNFESEGGFPFNLYLIGTDG 320 Query: 381 SQERLLVEDSNLQA-PTWSPSGRSLIFSRKKD 411 + + A P +SP G+ L FS ++ Sbjct: 321 TGLERVTHGQTFDAFPVFSPDGKYLAFSSNRN 352 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 31/196 (15%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ DI+ DLQ N ++LT+ + A+ SP +IVF SDR G +LY M +GSD + Sbjct: 153 DSFDIFVADLQGNIVDQLTDEPGYDAEATVSPQGDRIVFTSDRSGDLELYTMNLDGSDVR 212 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--------------------IGVMKKD 379 +I+ D+ +SP G I F E A + + D Sbjct: 213 QIT-DELGYDGGAFFSPDGTQIIFRASRPETEAEIAEYKDLLSRGLVQPTEMELFICNAD 271 Query: 380 GSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNG-------RNET 429 GS R L N +P + P G ++FS + + G LY I +G +T Sbjct: 272 GSDLRQLTFLGNANWSPFFHPDGDKILFSSNFESEGGFPFNLYLIGTDGTGLERVTHGQT 331 Query: 430 LINTPAYASDPQWVGF 445 P ++ D +++ F Sbjct: 332 FDAFPVFSPDGKYLAF 347 >gi|91773136|ref|YP_565828.1| periplasmic component of the Tol biopolymer transport system-like protein [Methanococcoides burtonii DSM 6242] gi|91712151|gb|ABE52078.1| TolB-like beta propeller protein [Methanococcoides burtonii DSM 6242] Length = 407 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 17/147 (11%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----- 363 + P ++IVF SDR G ++VM +G+ + ++S +E D WS G IA+ Sbjct: 192 WQPHGNKIVFRSDRGGYPDIWVMNYDGTGKLQLSNSEEKE-LDIKWSMDGTKIAYVSPSV 250 Query: 364 ------TKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F +I VM DGS ++ L D P +SP G + F ++ Sbjct: 251 LNTSNLSTFFNSSHSIWVMNSDGSDKKKLTGRHDRWDARPEFSPDGEKIAFDTTYKNESD 310 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQW 442 K+ +D++G NET++ A PQW Sbjct: 311 PKIIVMDVDGTNETVL---AKGWMPQW 334 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 16/180 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-- 322 + +G + + + DI+ ++ +L+N+ + +S D ++I + S Sbjct: 192 WQPHGNKIVFRSDRGGYPDIWVMNYDGTGKLQLSNSEEKELDIKWSMDGTKIAYVSPSVL 251 Query: 323 ---------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK-F 371 ++VM S+GSD+K+++ + P +SP G+ IAF T + E Sbjct: 252 NTSNLSTFFNSSHSIWVMNSDGSDKKKLTGRHDRWDARPEFSPDGEKIAFDTTYKNESDP 311 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I VM DG+ E +L + P WSP G + F+ K ++ + ++D ++E I Sbjct: 312 KIIVMDVDGTNETVLAKG---WMPQWSPMGNKIAFTGKSGNNSVVSVIALDEKFKSEPAI 368 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 8/77 (10%) Query: 175 SRILFVSESVVSGI-------IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 ++I +VS SV++ +S+ VM+ DG++ + LT D+ P FSP+ +K+A Sbjct: 241 TKIAYVSPSVLNTSNLSTFFNSSHSIWVMNSDGSDKKKLTGRHDRWDARPEFSPDGEKIA 300 Query: 228 Y-ATYDDEDILRVYLMD 243 + TY +E ++ +MD Sbjct: 301 FDTTYKNESDPKIIVMD 317 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 28/166 (16%) Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDRE----GKEQLYVMQSNGSDQKRISQD 344 + +N T LT+ N +SPD IV+ + E G + ++M +GS++ +++ Sbjct: 20 VSANETIELTDGTESNGFPQWSPDGEMIVYHTLSEVGAIGNTKTWMMDIDGSNKTQLTSG 79 Query: 345 KEA------SYFDPV---WSPQGDLIAFTKFSGE----------KFAIGVMKKDGSQERL 385 K S F P WSP GD + + G K I +M DG+ + Sbjct: 80 KSLGPLFLISGFSPTDNPWSPDGDKLLYGSLLGVEIIGDIPVFLKTDIQIMNADGTSKNK 139 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + SN + W+ + + D KL+ ++ +G + LI Sbjct: 140 VKGSSNAEYYGWAQNTTKIFMV-----DKSKKLWLLNPDGTEKVLI 180 >gi|302806842|ref|XP_002985152.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii] gi|300146980|gb|EFJ13646.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii] Length = 669 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLI 361 N S SPD +VF S R G + LY+M + + I E + D P WSP G+ I Sbjct: 468 NAFPSCSPDGKNLVFRSGRSGHKNLYIMDAELGEDGGIRALTEGPWVDTMPCWSPDGNWI 527 Query: 362 AFTKF----SGEKFAIGVMKKDGSQ-ERLLVEDSN---LQAPTWSPSGRSLIFSRKKDG 412 AF+ S E FAI ++ DGS+ R+ E S +SP ++L+F+ G Sbjct: 528 AFSSSRDGPSNEFFAIYLVHPDGSELHRVFPESSTRGRCNHVCFSPDSQTLLFTADCGG 586 >gi|255311420|ref|ZP_05353990.1| translocation protein TolB [Chlamydia trachomatis 6276] gi|255317721|ref|ZP_05358967.1| translocation protein TolB [Chlamydia trachomatis 6276s] Length = 431 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 11/284 (3%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 103 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + + P + AY + + ++T A K Sbjct: 163 ELWSVDYDGQHLYPLT-NEHSLSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 221 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVDLQSNA---TERLTNTLF-INI 305 +I + P FS K +D D++ S L + A ++L N F Sbjct: 222 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 281 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ S R+ K + P WSP G IAF Sbjct: 282 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLTKKYRNSSCPTWSPDGKKIAFC 341 Query: 365 KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 I V G E+L + ++P+W+ L++S Sbjct: 342 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYS 385 >gi|170724385|ref|YP_001758411.1| amidohydrolase [Shewanella woodyi ATCC 51908] gi|169809732|gb|ACA84316.1| amidohydrolase [Shewanella woodyi ATCC 51908] Length = 1069 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + ++ + L + + YSPD I F SD +G + +++M+++GS + ++ Sbjct: 75 DIYQMPIEGGEAKVLAEGIAWQMQPVYSPDGKYIAFTSDEDGGDNIWIMEADGSKPRAVT 134 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSN----LQ 393 ++ P WSP L+A ++G + + + G + L E N L Sbjct: 135 EETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEVWMYHVAGGEGVKLTERPNEQKDLG 194 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS+ Sbjct: 195 EPAYSPDGRYIYFSQ 209 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T ++N+S S PD IVF D G +Y M G + K +++ A PV+SP Sbjct: 51 VTEGTWMNVSVS--PDGKNIVF--DMLG--DIYQMPIEGGEAKVLAEGI-AWQMQPVYSP 103 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDG 412 G IAFT I +M+ DGS+ R + E++ L +P WSP + L+ + G Sbjct: 104 DGKYIAFTSDEDGGDNIWIMEADGSKPRAVTEETFRLLNSPAWSPDSQYLVARKHYTG 161 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 22/157 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 A SPD ++V+E+ GK L+V SNG + D E P WS G I F+ Sbjct: 371 AQVSPDGKKVVYEA--LGK--LWVKSLSNGKRTRLTKLDSELRELFPQWSRDGKSIVFST 426 Query: 366 FSGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG---------DT 414 + E + +I ++ ++ + L E PT+SP G +++ + K G +T Sbjct: 427 WDDEEQGSIRIVNVRNKRVKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPRTWSQET 486 Query: 415 GSKLYSIDLNGRNETLINT----PAYASDPQWVGFMD 447 G LY +D+ G+ I P + +D V FMD Sbjct: 487 G--LYRVDIKGKESIKITPDGYQPQFGADSDRVYFMD 521 >gi|119773170|ref|YP_925910.1| amidohydrolase [Shewanella amazonensis SB2B] gi|119765670|gb|ABL98240.1| conserved hypothetical amidohydrolase [Shewanella amazonensis SB2B] Length = 1062 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + E L + + + YSPD I F SD++G + L+VM ++G + + ++ Sbjct: 71 DIYRIPAKGGEAEVLASGIAWQMQPVYSPDGKYIAFTSDQDGGDNLWVMDADGKNPRAVT 130 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSN--- 391 ++ P WSP + K +GE + + +G Q L E N Sbjct: 131 KETFRLINSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHISGGEGVQ---LTERPNDQK 187 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 188 DLGEPAYSPDGRYIYFSQ 205 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 14/114 (12%) Query: 339 KRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +++S D E ++ + SP G I F G+ + I K G E L + P + Sbjct: 41 EKVSVDVNEGTWMNLSLSPDGKYIVF-DLLGDIYRIPA--KGGEAEVLASGIAWQMQPVY 97 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRN------ET--LINTPAYASDPQWV 443 SP G+ + F+ +DG G L+ +D +G+N ET LIN+PA++ D Q++ Sbjct: 98 SPDGKYIAFTSDQDG--GDNLWVMDADGKNPRAVTKETFRLINSPAWSPDSQYL 149 >gi|283781895|ref|YP_003372650.1| WD40 domain-containing protein beta propeller [Pirellula staleyi DSM 6068] gi|283440348|gb|ADB18790.1| WD40 domain protein beta Propeller [Pirellula staleyi DSM 6068] Length = 360 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 14/137 (10%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +++ DL ++LTN + +YS D I F SDR+G LYVM S+G+ Sbjct: 151 DPYTEMFEADLDGKILKQLTNEKGYDAEGAYSKDGKLIAFCSDRDGDADLYVMNSDGTGV 210 Query: 339 KRISQDKEASYFD--PVWSPQGDLIAFTKFSGEK-----FAIGVMKKDGSQERLLVEDSN 391 ++++ A +D P SP G + F EK F IG+ DG E L + + Sbjct: 211 RQLTN---APGYDGGPFISPDGKWVVFRSDRKEKDMLQLFVIGI---DGKNETQLTDTNG 264 Query: 392 LQ-APTWSPSGRSLIFS 407 + P W PS +I+S Sbjct: 265 VNWGPYWHPSEPIIIWS 281 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 18/190 (9%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 K++ N + +S +GK +D D+Y ++ +LTN + S Sbjct: 167 KQLTNEKGYDAEGAYSKDGKLIAFCSDRDGDADLYVMNSDGTGVRQLTNAPGYDGGPFIS 226 Query: 311 PDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---- 364 PD +VF SDR+ K+ QL+V+ +G ++ +++ D + P W P +I ++ Sbjct: 227 PDGKWVVFRSDRKEKDMLQLFVIGIDGKNETQLT-DTNGVNWGPYWHPSEPIIIWSGADH 285 Query: 365 ---------KFSGEKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 ++ I K G+ +R+ P +SP G+ L+++ + D Sbjct: 286 SDPTARPNYDLWAARYEIASDGKFKLGTTQRVTDFAGADVLPVFSPDGKKLMWTSTRSDD 345 Query: 414 TGSKLYSIDL 423 S+L+ D Sbjct: 346 HSSQLFLADF 355 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 105/273 (38%), Gaps = 29/273 (10%) Query: 180 VSESVVS---GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT----YD 232 V SVV+ G+ + + + NI+ LT + E FSP+ +++ Y Y Sbjct: 18 VHTSVVAQPPGVASSGPSIEAKTLGNIKQLTSGFVKA-GEGYFSPDGKQIVYQAQPLDYP 76 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQS 291 I R L R P +I R FS +G + L S D A+D + Sbjct: 77 FYQIFRQSLDGGR----PLQISTGRGRTTCSYFSIDGTKILFASSHLDPAIDATEAAERK 132 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 E + + + P + +FE+D +GK + G D E +Y Sbjct: 133 QQEEDKKSGVRRRYKWDFDPYTE--MFEADLDGKILKQLTNEKG-------YDAEGAY-- 181 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 S G LIAF + VM DG+ R L P SP G+ ++F + Sbjct: 182 ---SKDGKLIAFCSDRDGDADLYVMNSDGTGVRQLTNAPGYDGGPFISPDGKWVVFRSDR 238 Query: 411 DGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 +L+ I ++G+NET L +T P W Sbjct: 239 KEKDMLQLFVIGIDGKNETQLTDTNGVNWGPYW 271 >gi|297748729|gb|ADI51275.1| Tolb [Chlamydia trachomatis D-EC] gi|297749609|gb|ADI52287.1| Tolb [Chlamydia trachomatis D-LC] Length = 432 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 11/284 (3%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 104 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 163 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + + P + AY + + ++T A K Sbjct: 164 ELWSVDYDGQHLYPLT-NEHSLSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 222 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVDLQSNA---TERLTNTLF-INI 305 +I + P FS K +D D++ S L + A ++L N F Sbjct: 223 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 282 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ S R+ K + P WSP G IAF Sbjct: 283 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLTKKYRNSSCPTWSPDGKKIAFC 342 Query: 365 KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 I V G E+L + ++P+W+ L++S Sbjct: 343 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYS 386 >gi|171321510|ref|ZP_02910451.1| translocation protein TolB [Burkholderia ambifaria MEX-5] gi|171093218|gb|EDT38425.1| translocation protein TolB [Burkholderia ambifaria MEX-5] Length = 219 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 2/187 (1%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP +S + +++ IY+V+ RLT + I+ YSPD I F SD Sbjct: 32 APAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTEPYYSPDGRWIYFTSD 91 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 R G Q+Y M + G + ++ P SP G L+A+ +G F + V Sbjct: 92 RGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRISPDGKLLAYISRTGGGFKLYVQDLQ 151 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + + ++P+++ +G+ L+++ + G D + + L + Sbjct: 152 TGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDGSAPPQILSVQGGSVRE 211 Query: 440 PQWVGFM 446 P W FM Sbjct: 212 PSWGPFM 218 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 13/170 (7%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y DL + +++ N + ++SPDS+ + G Q+Y + +NG +R++Q Sbjct: 10 VYIHDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQ 69 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM----KKDGSQERLLVEDSNLQAPTWSP 399 +P +SP G I FT G I M + G+ +R+ S +P SP Sbjct: 70 SSSID-TEPYYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRISP 128 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT-----PAYASDPQWV 443 G+ L + + G G KLY DL G + NT P++A++ Q++ Sbjct: 129 DGKLLAYISRTGG--GFKLYVQDLQTGAANAITNTNRDESPSFAANGQYL 176 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA--P 250 + ++ +G +R LT S I EP +SP+ + + Y T D ++Y M + + A Sbjct: 54 IYTVNANGGGLRRLTQS-SSIDTEPYYSPDGRWI-YFTSDRGGAPQIYRMPAQGESAGAA 111 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ S +PR S +GK + +Y DLQ+ A +TNT + S S++ Sbjct: 112 QRVTFTGSYNTSPRISPDGKLLAYISRTGGGFKLYVQDLQTGAANAITNT-NRDESPSFA 170 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + +++ + G+ L + S+GS +I + S +P W P Sbjct: 171 ANGQYLLYATQSGGRNVLAAVPSDGSAPPQILSVQGGSVREPSWGP 216 >gi|255690149|ref|ZP_05413824.1| MdsD protein [Bacteroides finegoldii DSM 17565] gi|260624433|gb|EEX47304.1| MdsD protein [Bacteroides finegoldii DSM 17565] Length = 1101 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 23/151 (15%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ +ASY +PVWSP G+ IAF Sbjct: 30 ARISPDGSEIVFCY----KGDIYKVSAQGGTAVQLT--TQASYEANPVWSPDGEQIAFAS 83 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRK-KDGDTG-------- 415 F + +M DG R L S + P T++P G+ ++FS +D T Sbjct: 84 DRNGNFDLFIMSADGGAARRLTYHSASEIPSTFTPDGKYVLFSASIQDPATSALFPTSAM 143 Query: 416 SKLYSIDLNGRN-ETLINTPAYASDPQWVGF 445 ++LY + + G N E ++ TPA +WV F Sbjct: 144 TELYRVPVEGGNTEQVLGTPA-----EWVCF 169 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 46 DIYKVSAQGGTAVQLTTQASYEANPVWSPDGEQIAFASDRNGNFDLFIMSADGGAARRLT 105 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 106 Y-HSASEIPSTFTPDGKYVLFS 126 >gi|15605329|ref|NP_220115.1| translocation protein TolB [Chlamydia trachomatis D/UW-3/CX] gi|76789337|ref|YP_328423.1| translocation protein TolB [Chlamydia trachomatis A/HAR-13] gi|166154813|ref|YP_001654931.1| translocation protein TolB [Chlamydia trachomatis 434/Bu] gi|166155688|ref|YP_001653943.1| translocation protein TolB [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237803027|ref|YP_002888221.1| translocation protein TolB [Chlamydia trachomatis B/Jali20/OT] gi|237804948|ref|YP_002889102.1| translocation protein TolB [Chlamydia trachomatis B/TZ1A828/OT] gi|301336091|ref|ZP_07224335.1| translocation protein TolB [Chlamydia trachomatis L2tet1] gi|6647882|sp|O84604|TOLB_CHLTR RecName: Full=Protein tolB; Flags: Precursor gi|119371040|sp|Q3KL97|TOLB_CHLTA RecName: Full=Protein tolB; Flags: Precursor gi|226705873|sp|B0B8H3|TOLB_CHLT2 RecName: Full=Protein tolB; Flags: Precursor gi|226705874|sp|B0BA52|TOLB_CHLTB RecName: Full=Protein tolB; Flags: Precursor gi|3329043|gb|AAC68201.1| component of a macromolecule transport system [Chlamydia trachomatis D/UW-3/CX] gi|76167867|gb|AAX50875.1| TolB [Chlamydia trachomatis A/HAR-13] gi|165930801|emb|CAP04299.1| outer membrane component of membrane transport system [Chlamydia trachomatis 434/Bu] gi|165931676|emb|CAP07253.1| outer membrane component of membrane transport system [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273248|emb|CAX10163.1| outer membrane component of membrane transport system [Chlamydia trachomatis B/TZ1A828/OT] gi|231274261|emb|CAX11056.1| outer membrane component of membrane transport system [Chlamydia trachomatis B/Jali20/OT] gi|296436134|gb|ADH18308.1| translocation protein TolB [Chlamydia trachomatis G/9768] gi|296437062|gb|ADH19232.1| translocation protein TolB [Chlamydia trachomatis G/11222] gi|296437994|gb|ADH20155.1| translocation protein TolB [Chlamydia trachomatis G/11074] gi|297140496|gb|ADH97254.1| translocation protein TolB [Chlamydia trachomatis G/9301] Length = 431 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 11/284 (3%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 103 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + + P + AY + + ++T A K Sbjct: 163 ELWSVDYDGQHLYPLT-NEHSLSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 221 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVDLQSNA---TERLTNTLF-INI 305 +I + P FS K +D D++ S L + A ++L N F Sbjct: 222 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 281 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ S R+ K + P WSP G IAF Sbjct: 282 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLTKKYRNSSCPTWSPDGKKIAFC 341 Query: 365 KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 I V G E+L + ++P+W+ L++S Sbjct: 342 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYS 385 >gi|304412719|ref|ZP_07394322.1| amidohydrolase [Shewanella baltica OS183] gi|307305816|ref|ZP_07585562.1| amidohydrolase [Shewanella baltica BA175] gi|304348929|gb|EFM13344.1| amidohydrolase [Shewanella baltica OS183] gi|306911309|gb|EFN41735.1| amidohydrolase [Shewanella baltica BA175] Length = 1062 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVSGGEARPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWLMDADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 Q+ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 QETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDQK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 15/107 (14%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 E ++ + SP G + F G+ + I V G + R L + Q P +SP G+ + Sbjct: 51 EGTWMNLSISPDGKHVVF-DLLGDIYQIPV---SGGEARPLAQGIAWQMQPVYSPDGKHI 106 Query: 405 IFSRKKDGDTGSKLYSIDLNGRN------ET--LINTPAYASDPQWV 443 F+ DGD G ++ +D +G N ET L+N+PA++ D Q++ Sbjct: 107 AFT--SDGDGGDNIWLMDADGSNPRTVTQETFRLLNSPAWSPDSQYL 151 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + + P WS G I FT + Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKSL-PDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + + V+ K G ++L E PT+SP G +++ + + G+ + Sbjct: 426 NDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTQGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ I+ Y + Sbjct: 486 LYKVDIKGKQNKKISADGYQA 506 >gi|190892048|ref|YP_001978590.1| periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CIAT 652] gi|218514537|ref|ZP_03511377.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli 8C-3] gi|190697327|gb|ACE91412.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CIAT 652] Length = 276 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G++ +D+ DIY++ + RLT+ N YS D I F S R G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGVETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D + ++F SP+ D + + F + +M Sbjct: 176 LMQIWRIHPDGTGLEQVTSDNQGNWFAHP-SPKNDKVLILSYDPSVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG + L E + P WSP G + R Sbjct: 235 DMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVR 270 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 41/227 (18%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H IS D + + +K +F K+S+ ++ +G R +T +Q + Sbjct: 70 HGISPDGTEIVISDKSEFG---------------KSSIYILPIEGGTPRLVT--ENQPSY 112 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLM------DTRIDRAPKRIGNFRSMILAPRFSSNG 269 +SP+ +++AY D D+ +Y + +TR+ R P +S++G Sbjct: 113 WHGWSPDGRQLAYCGIRD-DLFDIYTISVDGGVETRLTHGEGRND-------GPDYSADG 164 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI--------VFESD 321 + + + M I+ + E++T+ N A SP + ++ VF+ Sbjct: 165 QWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFAHPSPKNDKVLILSYDPSVFDHP 224 Query: 322 REGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKF 366 R+ +L +M +G + K + + + + P WSP GD A+ ++ Sbjct: 225 RDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVRY 271 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%) Query: 355 SPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G I + K K +I ++ +G RL+ E+ WSP GR L + + D Sbjct: 73 SPDGTEIVISDKSEFGKSSIYILPIEGGTPRLVTENQPSYWHGWSPDGRQLAYCGIR--D 130 Query: 414 TGSKLYSIDLNGRNETLI-------NTPAYASDPQWVGF 445 +Y+I ++G ET + + P Y++D QW+ F Sbjct: 131 DLFDIYTISVDGGVETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|153005706|ref|YP_001380031.1| WD40 domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029279|gb|ABS27047.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. Fw109-5] Length = 357 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 125/281 (44%), Gaps = 45/281 (16%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 F+ R L V ++ G + L VM DG+ +R ++ + ++ F P +++ Y++ Sbjct: 64 FDGREL-VFQATPEGAGCDQLYVMGADGSGLRRVSRGKGRVTCG-YFFPGGERIVYSSTH 121 Query: 233 --------DEDILRVY---LMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRA-----LIS 275 D + Y L D ++ A + + AP ++++ + + + Sbjct: 122 ASAAECPPKPDHSKGYVWALYDYQLYTARPDGSDLAPLAPAPGKYNAEATVSKDGWIVFT 181 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------------- 321 +D +++Y + L + RLT+T + A +S D +IVF + Sbjct: 182 STRDGDLELYKMRLDGSGLVRLTHTPGYDGGAFFSADGRRIVFRASRPTTEAELADYRAL 241 Query: 322 ------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----KF 371 R GK +L+ M ++GSD +++++ AS F P + P G I F G+ F Sbjct: 242 LGEGLVRPGKLELFTMNADGSDVRQVTRLGAAS-FAPFFHPDGRRIVFASNVGDPRGRNF 300 Query: 372 AIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + V+ DG+ ER+ ++ P +SP G+ L+F+ ++ Sbjct: 301 DLYVVNDDGTGLERITTNETFDGFPMFSPDGKRLVFASNRN 341 >gi|254494925|ref|ZP_01052559.2| peptidase family S41 [Polaribacter sp. MED152] gi|213690507|gb|EAQ41987.2| peptidase family S41 [Polaribacter sp. MED152] Length = 1080 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESD 321 P S GKRA+ + + I++V ++ LTN+ I + S +SP Q+ + SD Sbjct: 307 PNISPKGKRAIFEYRGE----IFTVPKENGTWRNLTNSSGIADRSPIWSPKGDQVAWFSD 362 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + G+ +L + NG++Q+ I YF P WSP G IA+T Sbjct: 363 KNGEYELVLADQNGNNQEFIKLPNPTFYFQPDWSPNGKYIAYT 405 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P+FS +G+ + Q D +D+Y V + +RLT +I ++PD +I+F S+ Sbjct: 64 SPKFSKDGQWIAFTAQYDGNIDVYLVSINGGEPKRLTYHSASDIVQGWTPD-GKILFRSN 122 Query: 322 REGK----EQLYVMQSNGS 336 REG+ + Y + + G Sbjct: 123 REGRPTQTNKFYTIGAEGG 141 >gi|149922524|ref|ZP_01910955.1| tol-pal system beta propeller repeat protein TolB [Plesiocystis pacifica SIR-1] gi|149816632|gb|EDM76126.1| tol-pal system beta propeller repeat protein TolB [Plesiocystis pacifica SIR-1] Length = 418 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 21/218 (9%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +Q FEP SP+ ++VA+ + D D +Y M T AP R+ APR+S++G+ Sbjct: 203 EQGNFEPALSPDGERVAFVSSRDGDA-ELYTM-TADGGAPTRLTTSPGDDSAPRWSADGQ 260 Query: 271 R-ALISVQK-DEAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDREGK 325 A +S + D MD++ + + L + + S SPD +++ F +G Sbjct: 261 TLAFVSARDLDRGMDVFVIPAAGGEAKALLPARDAPVLVRDLSVSPDGTKLAFTELSQGA 320 Query: 326 EQLYVMQS--NGSDQKRISQDKEASYF------DPVWSPQGDLIAFTKFSG-EKFAIGVM 376 V+ S G+ R + E + PVWSP G +AFT+ SG ++ I M Sbjct: 321 GAAVVVVSFPEGAVLARSRERGEGAGATPLIDEQPVWSPDGKHLAFTRGSGPDRSDILRM 380 Query: 377 KKDGSQE-RLLVEDSNLQA----PTWSPSGRSLIFSRK 409 DG + L + S+ + P WSP+ + +R+ Sbjct: 381 DADGRERVNLTMGPSDNRGVHWLPRWSPTSATSSCARR 418 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 28/192 (14%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 GNF P S +G+R +D ++Y++ A RLT + + + +S D Sbjct: 205 GNFE-----PALSPDGERVAFVSSRDGDAELYTMTADGGAPTRLTTSPGDDSAPRWSADG 259 Query: 314 SQIVFESDREGKEQL--YVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFS-G 368 + F S R+ + +V+ + G + K + ++A D SP G +AFT+ S G Sbjct: 260 QTLAFVSARDLDRGMDVFVIPAAGGEAKALLPARDAPVLVRDLSVSPDGTKLAFTELSQG 319 Query: 369 EKFAIGVM-------------KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 A+ V+ + +G+ L+++ P WSP G+ L F+R D Sbjct: 320 AGAAVVVVSFPEGAVLARSRERGEGAGATPLIDEQ----PVWSPDGKHLAFTRGSGPDR- 374 Query: 416 SKLYSIDLNGRN 427 S + +D +GR Sbjct: 375 SDILRMDADGRE 386 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQ--SNGSDQK---RISQDKEASYFDPVWSPQGDLIA 362 S P +VFESD LY ++ SNG D R++ D++ + F+P SP G+ +A Sbjct: 161 SRDPAGRFLVFESDANSFRDLYRLELSSNGGDAPSVLRLTGDEQGN-FEPALSPDGERVA 219 Query: 363 FTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F + M DG + RL + AP WS G++L F +D D G ++ I Sbjct: 220 FVSSRDGDAELYTMTADGGAPTRLTTSPGDDSAPRWSADGQTLAFVSARDLDRGMDVFVI 279 Query: 422 DLNG 425 G Sbjct: 280 PAAG 283 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-----RLTNTLFINISASYSPD 312 +MI P G+ + + D+Y ++L SN + RLT N + SPD Sbjct: 155 AMIRNPSRDPAGRFLVFESDANSFRDLYRLELSSNGGDAPSVLRLTGDEQGNFEPALSPD 214 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++ F S R+G +LY M ++G R++ P WS G +AF Sbjct: 215 GERVAFVSSRDGDAELYTMTADGGAPTRLTT-SPGDDSAPRWSADGQTLAF 264 >gi|149919246|ref|ZP_01907729.1| WD40-like Beta Propeller protein [Plesiocystis pacifica SIR-1] gi|149819960|gb|EDM79382.1| WD40-like Beta Propeller protein [Plesiocystis pacifica SIR-1] Length = 1034 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 17/192 (8%) Query: 204 RYLTPSR---DQILF-----EPRFSPNQQKVAYATYDDEDILRVYL-MDTRIDRAPKRIG 254 R+ PSR +Q+ F P SP+ + VA+ D +L +DT R + +G Sbjct: 416 RWKGPSRRGREQLTFGMRARAPDVSPDGRTVAFVRNDSGQSRIAFLALDTLEVRELEPLG 475 Query: 255 NFRS------MILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISA 307 R P + +G + S +D DIY DL++ TER+T + S Sbjct: 476 TGRGSGVELQQAYDPDWHPSGTKVAYSAWRDGGWRDIYVHDLETQTTERITADRAQDNSP 535 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD ++F SDR G LY + S Q R + F+P S G+ IA+ +S Sbjct: 536 EWSPDGRWLLFSSDRSGVFNLYAFDTE-SGQTRQVSNVLGGAFEPAISHDGERIAYVGYS 594 Query: 368 GEKFAIGVMKKD 379 + + M D Sbjct: 595 STGYDLWAMDFD 606 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%) Query: 310 SPDSSQIVFESDREGK--------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SPD + F + G+ + L V + R S + +DP W P G + Sbjct: 440 SPDGRTVAFVRNDSGQSRIAFLALDTLEVRELEPLGTGRGSGVELQQAYDPDWHPSGTKV 499 Query: 362 AFTKF-SGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 A++ + G I V + + ER+ + + +P WSP GR L+FS + G LY Sbjct: 500 AYSAWRDGGWRDIYVHDLETQTTERITADRAQDNSPEWSPDGRWLLFSSDRSGVF--NLY 557 Query: 420 SIDL-NGRNETLINTPAYASDP 440 + D +G+ + N A +P Sbjct: 558 AFDTESGQTRQVSNVLGGAFEP 579 >gi|257055979|ref|YP_003133811.1| periplasmic component of the Tol biopolymer transport system [Saccharomonospora viridis DSM 43017] gi|256585851|gb|ACU96984.1| periplasmic component of the Tol biopolymer transport system [Saccharomonospora viridis DSM 43017] Length = 1059 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/336 (25%), Positives = 135/336 (40%), Gaps = 53/336 (15%) Query: 108 AQVLVTGRVIKEGKD------------RLRV----EFRLWDVKD--RKQIIGKKFFSSP- 148 A ++V GRV+ EG+D RL R+ D+ + + + + F P Sbjct: 248 ADLVVDGRVVTEGEDVFLFAAEWLDDHRLLYTADGALRIRDLAEGTTRDVPFEATFELPR 307 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +R+ H D + G + +L V+ + N L +M DG R LT Sbjct: 308 VDYRRKEHDFDDRSRHRVRG----ILTPVLSPDARQVAFVALNDLWLMPLDG-TPRRLTH 362 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 R P FSP+ + +AYA D +Y+ D R R +R+ ++P FS + Sbjct: 363 DR-FAESNPVFSPDGRYLAYAA-DRAGTPDLYVRDLRTGRE-RRVTALDGAEVSPAFSPD 419 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------- 321 G++ +D+ Y +DL++ +L LF S+S D + F + Sbjct: 420 GRKLAF---QDQDGATYVLDLRTGRVRQLVPPLFGPGRPSWSADGKTLAFVAVKPYSARF 476 Query: 322 REGKEQLYVM---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 REG Q+ + + G + IS + PVWSP G +AF S Sbjct: 477 REGTSQILTVDVVTGKQTYHAPGGEHASISTRGDDG---PVWSPDGRQVAFVVDS--TLR 531 Query: 373 IGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIF 406 I + DG+ E + AP+WS GR L++ Sbjct: 532 IMPVAADGTPRGPARELNGEVADAPSWSGDGRRLLY 567 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +LT F + +S D + I F SDR G ++ + + R + D + P W Sbjct: 132 QLTRGGFDDREPRWSFDGTTIAFSSDRGGSYDIWTVDVATGELIRRTDDPGQEHT-PAWH 190 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKD 411 P G + + G I + DG+ L+ ++ L AP+WSP G L + R +D Sbjct: 191 PDGRSLVYVADEG----IAAVAADGTTRTLVPSPGDEVALHAPSWSPDGGRLAYVRHED 245 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PR+S +G S + + DI++VD+ + R T+ + ++ PD +V+ +D Sbjct: 143 PRWSFDGTTIAFSSDRGGSYDIWTVDVATGELIRRTDDPGQEHTPAWHPDGRSLVYVAD- 201 Query: 323 EGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFTKF 366 E + + ++G+ + + S E + P WSP G +A+ + Sbjct: 202 ---EGIAAVAADGTTRTLVPSPGDEVALHAPSWSPDGGRLAYVRH 243 >gi|209549595|ref|YP_002281512.1| hypothetical protein Rleg2_2002 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535351|gb|ACI55286.1| WD40 domain protein beta Propeller [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G + +++ DIY++ + A RLT+ N YS D I F S R G Sbjct: 116 WSPDGCQLAYCGIRNDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +GS ++++ D + ++F SP D + + F + +M Sbjct: 176 LMQIWRIHPDGSGLEQVTSDNQGNWFAHP-SPSNDKVLILSYDPSVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG + L E + P WSP G + R Sbjct: 235 DMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVR 270 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 11/178 (6%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 V + + R RA + + ++ AP FS +G L++ + + ++ + L ++ Sbjct: 5 VEIYNVRTGRA-REVWQTDKLVEAPNFSPDGCYLLLN---GDGL-LWRLPLDGGEVVKVD 59 Query: 299 NTLFINISASY--SPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +N + + SPD ++IV E GK +YV+ G + +++++ + + WS Sbjct: 60 TGFAVNCNNDHGISPDGTEIVISDKTEFGKSTIYVLPIEGGTPRLVTENQPSYWHG--WS 117 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 P G +A+ + F I + DG E RL + P +S G+ + F+ + G Sbjct: 118 PDGCQLAYCGIRNDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/187 (20%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+++ V+ +G R +T +Q + +SP+ ++AY + D+ +Y + A Sbjct: 89 KSTIYVLPIEGGTPRLVT--ENQPSYWHGWSPDGCQLAYCGIRN-DLFDIYTISVD-GGA 144 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 R+ + P +S++G+ + + M I+ + + E++T+ N A Sbjct: 145 ETRLTHGEGRNDGPDYSADGQWIYFNSSRTGLMQIWRIHPDGSGLEQVTSDNQGNWFAHP 204 Query: 310 SPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGD 359 SP + ++ VF+ R+ +L +M +G + K + + + + P WSP G+ Sbjct: 205 SPSNDKVLILSYDPSVFDHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGE 264 Query: 360 LIAFTKF 366 A+ ++ Sbjct: 265 EFAYVRY 271 >gi|300786706|ref|YP_003766997.1| TolB-related protein [Amycolatopsis mediterranei U32] gi|299796220|gb|ADJ46595.1| TolB-related protein [Amycolatopsis mediterranei U32] Length = 1342 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 4/168 (2%) Query: 247 DRAPK--RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 D AP ++ N ++ L P S +G+ + ++ + ++ + + ++T+ + Sbjct: 106 DGAPTALQLTNDDAVDLHPALSPDGRTVAFASERTGSRKLFVIGVDGRGLRQVTSGPATD 165 Query: 305 ISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S S+SPD +++ F S R+ +Y + +G R++ D A P W P Sbjct: 166 DSPSWSPDGTRLAFSSTRDDPAGDIYTVGVDGGTPARLTTDPAADT-QPAWGPARIAFTT 224 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 T+F + + + G+ R + + + P WSP GR +R KD Sbjct: 225 TRFHPAGDVVLMAEAGGAVTRAVPDPGDSSEPAWSPDGRLAFTTRAKD 272 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 14/243 (5%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID-RAPKRIGNF 256 RDGA + D + P SP+ + VA+A+ E L +D R +++ + Sbjct: 105 RDGAPTALQLTNDDAVDLHPALSPDGRTVAFAS---ERTGSRKLFVIGVDGRGLRQVTSG 161 Query: 257 RSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + +P +S +G R A S + D A DIY+V + RLT + ++ P ++ Sbjct: 162 PATDDSPSWSPDGTRLAFSSTRDDPAGDIYTVGVDGGTPARLTTDPAADTQPAWGP--AR 219 Query: 316 IVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 I F + R + + + ++ G+ + + ++S +P WSP G L T+ + Sbjct: 220 IAFTTTRFHPAGDVVLMAEAGGAVTRAVPDPGDSS--EPAWSPDGRLAFTTRAKDPSGDV 277 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID-LNGRNETLIN 432 + + + ++D PT+ GR + + G T ++S D G L N Sbjct: 278 RQIVGETVTDISALKDIGETEPTFRSDGRPVFTELRASGTT--DIWSADAAGGDRRDLTN 335 Query: 433 TPA 435 P Sbjct: 336 RPG 338 Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAF 363 SA SPD + +VF++DR QL V ++G + + Q D+ S DP WSP G L+A+ Sbjct: 902 SADVSPDGAALVFQNDRS---QLCVAPADGGRARVLVQSGDEGESLNDPAWSPDGTLVAY 958 Query: 364 -TKFSGEKFAIGVMKKDGSQERLLVE 388 + FS +I ++ G R L++ Sbjct: 959 DSAFSESVPSILIVPSAGGTPRPLID 984 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 12/127 (9%) Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK--FAIGVMK 377 +R+G +L+ ++ +++ D +A P SP G +AF ++ +G + F IGV Sbjct: 96 ERDG--ELWFLRDGAPTALQLTND-DAVDLHPALSPDGRTVAFASERTGSRKLFVIGV-- 150 Query: 378 KDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PA 435 DG R + + +P+WSP G L FS +D D +Y++ ++G + T PA Sbjct: 151 -DGRGLRQVTSGPATDDSPSWSPDGTRLAFSSTRD-DPAGDIYTVGVDGGTPARLTTDPA 208 Query: 436 YASDPQW 442 + P W Sbjct: 209 ADTQPAW 215 Score = 44.7 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 111/292 (38%), Gaps = 59/292 (20%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDE 234 + F SE S L V+ DG +R +T P+ D P +SP+ ++A+++ D+ Sbjct: 133 VAFASERTGS----RKLFVIGVDGRGLRQVTSGPATDD---SPSWSPDGTRLAFSSTRDD 185 Query: 235 DILRVYLM----------------DTRIDRAPKRI----------GNFRSMILA------ 262 +Y + DT+ P RI G+ M A Sbjct: 186 PAGDIYTVGVDGGTPARLTTDPAADTQPAWGPARIAFTTTRFHPAGDVVLMAEAGGAVTR 245 Query: 263 ----------PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 P +S +G+ A + KD + D+ + + T+ ++ D Sbjct: 246 AVPDPGDSSEPAWSPDGRLAFTTRAKDPSGDVRQI-VGETVTDISALKDIGETEPTFRSD 304 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKF 371 + E G ++ + G D++ ++ A FDP +S G +A+T+ G+ Sbjct: 305 GRPVFTELRASGTTDIWSADAAGGDRRDLTNRPGADEFDPAFSADGSQLAYTQGGRGDSV 364 Query: 372 A--IGVMKKDGSQERLLVEDSN----LQAPTWSPSGRSLIFSRKKDGDTGSK 417 A I V DGS R L ++ + P WSP ++ F+ G S+ Sbjct: 365 ATEIIVANADGSGPRPLTGPTDGTKRERHPAWSPDATAIAFTVTVGGGESSR 416 >gi|294495630|ref|YP_003542123.1| Periplasmic component of the Tol biopolymer transport system [Methanohalophilus mahii DSM 5219] gi|292666629|gb|ADE36478.1| Periplasmic component of the Tol biopolymer transport system [Methanohalophilus mahii DSM 5219] Length = 360 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 26/214 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-----ATYDDEDILRVYLMDTRI 246 +L M+ DG+NI LT D+ P SP+ +AY YD +++MD I Sbjct: 110 NLFKMNVDGSNITQLTDGADR--RSPSISPDGSMLAYLSNIAGNYD------IWVMD--I 159 Query: 247 DRAPKRIGNFRSMILA-PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R F S P +S +G + S + + ++ D++ + + +LT+ ++ Sbjct: 160 TNKSHRQLTFTSEDEGKPSWSPDGDEVIYSFKDN----LWLTDVEFDKSRQLTHGTSNDV 215 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + P +IVF SDR G+ L+++ + +++ ++ D++ Y P P G I F Sbjct: 216 DPFFLPSGEKIVFISDRGGETNLWLIDTEDDERQLLTDDRKVEY-SPAAGPDGKKIVFGA 274 Query: 366 FSGEKFAIGVMKKDGSQER-----LLVEDSNLQA 394 + E F + +++ + + + VED+N++A Sbjct: 275 RANETFDLWMLEMENPEANDGFSDINVEDTNVEA 308 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 18/227 (7%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 ANI LT P +SP+ ++ Y +D+ +++MD P I + Sbjct: 29 ANIYPLTDDFSSDYHYPAWSPDGTQITYM--NDK---AIWIMDAD-GSNPHVIYDGMKWD 82 Query: 261 LAPRFSSNGKRALISVQKDEA-----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P FS++GK + + + ++++ +++ + +LT+ S S SPD S Sbjct: 83 GDPCFSADGKDIYFASESRKPYSSTYLNLFKMNVDGSNITQLTDGA-DRRSPSISPDGSM 141 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + S+ G ++VM ++++ E P WSP GD + ++ + + Sbjct: 142 LAYLSNIAGNYDIWVMDITNKSHRQLTFTSEDEG-KPSWSPDGDEVIYS--FKDNLWLTD 198 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++ D S++ L SN P + PSG ++F + G+T L+ ID Sbjct: 199 VEFDKSRQ-LTHGTSNDVDPFFLPSGEKIVFISDRGGET--NLWLID 242 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSP 399 ++ D + Y P WSP G I + AI +M DGS ++ + P +S Sbjct: 34 LTDDFSSDYHYPAWSPDGTQITYMN----DKAIWIMDADGSNPHVIYDGMKWDGDPCFSA 89 Query: 400 SGRSLIF---SRKKDGDTGSKLYSIDLNGRNETLINTPA 435 G+ + F SRK T L+ ++++G N T + A Sbjct: 90 DGKDIYFASESRKPYSSTYLNLFKMNVDGSNITQLTDGA 128 >gi|126650236|ref|ZP_01722464.1| YuxL [Bacillus sp. B14905] gi|126592886|gb|EAZ86868.1| YuxL [Bacillus sp. B14905] Length = 662 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 8/149 (5%) Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATE 295 M T+ P+ + + +S + P+ S +G + +KD +++ ++L+ + Sbjct: 1 MTTKQGIQPEDLYHLKS-VADPQLSPDGTEVVYVETRIDEKKKDYVSNLFYLNLKDKRPQ 59 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + T S +SPD SQI F S R GK Q++V+ G + K+++ K + PVWS Sbjct: 60 QWTYGDDRTSSPVWSPDGSQIAFSSTRSGKPQIFVLSKTGGEAKQVTYCKNGAS-TPVWS 118 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 P G+ IAF+ G+ I +D +E Sbjct: 119 PCGEKIAFSVMLGKDETILDKAEDDKKEE 147 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%) Query: 310 SPDSSQIVFESDR-EGKEQLYV-------MQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SPD +++V+ R + K++ YV ++ Q D+ +S PVWSP G I Sbjct: 24 SPDGTEVVYVETRIDEKKKDYVSNLFYLNLKDKRPQQWTYGDDRTSS---PVWSPDGSQI 80 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFS 407 AF+ K I V+ K G + + + N P WSP G + FS Sbjct: 81 AFSSTRSGKPQIFVLSKTGGEAKQVTYCKNGASTPVWSPCGEKIAFS 127 >gi|18395019|ref|NP_564147.1| unknown protein [Arabidopsis thaliana] gi|5263319|gb|AAD41421.1|AC007727_10 ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and gb|N65244 come from this gene [Arabidopsis thaliana] gi|15028243|gb|AAK76710.1| unknown protein [Arabidopsis thaliana] gi|23297034|gb|AAN13226.1| unknown protein [Arabidopsis thaliana] gi|332192017|gb|AEE30138.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana] Length = 706 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 158/402 (39%), Gaps = 88/402 (21%) Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 Q++T P + F S V + G D VE L+D+K R + I +P Sbjct: 306 QRVT-PPGVHAFTPATSPNNHEFVAVATRRPGSDYRHVE--LFDLK-RNEFIELTRLVAP 361 Query: 149 ASWRKIAHTISDDI----YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S + +S D Y S G+ S +LF+ NI+ Sbjct: 362 KS-HHLNPFLSPDSSRVGYHSCRGDANGRRSPLLFLE--------------------NIQ 400 Query: 205 YLTPSRDQILFE-----PRFSPNQQKVAYATY-----------DDEDILRVYLMDTRIDR 248 T +RD LF P FSP ++AY ++ + T D Sbjct: 401 --TTTRDLSLFRIDGSFPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYKGMAFSTAWD- 457 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL----QSNATERLTNTLFIN 304 P R G +SS+G + ++ E +D+ S+D+ +S++ RLT N Sbjct: 458 -PVRPGIV--------YSSSGP--TFATERTE-VDVISIDVDAADKSSSVRRLTTNGKNN 505 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIA 362 SPD +IVF S R G + LY+M + + + + E ++ D + WSP G+ IA Sbjct: 506 AFPWPSPDGKRIVFRSGRTGHKNLYIMDAEKGESGGLWRLTEGAWTDTMCNWSPDGEWIA 565 Query: 363 F-----TKFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDGDT 414 F + SG F + ++ +G+ R L++ P +SP +SL+F+ G + Sbjct: 566 FASDRESPGSG-SFELFLIHPNGTGLRKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAGIS 624 Query: 415 GSK------------LYSIDLNGRNETLINTPAYA-SDPQWV 443 ++++ L+G N + +Y P W Sbjct: 625 AEPISNPHHYQPYGDIFTVKLDGSNVRRLTHNSYEDGTPAWA 666 >gi|160889635|ref|ZP_02070638.1| hypothetical protein BACUNI_02061 [Bacteroides uniformis ATCC 8492] gi|270293977|ref|ZP_06200179.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479170|ref|ZP_07938307.1| hypothetical protein HMPREF1007_01423 [Bacteroides sp. 4_1_36] gi|156860627|gb|EDO54058.1| hypothetical protein BACUNI_02061 [Bacteroides uniformis ATCC 8492] gi|270275444|gb|EFA21304.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904658|gb|EFV26475.1| hypothetical protein HMPREF1007_01423 [Bacteroides sp. 4_1_36] Length = 369 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 20/183 (10%) Query: 244 TRIDRAPKRIGNFRSMI-LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +RI P G R + +AP + S +GK +++ D+Y++ + RLT Sbjct: 181 SRIYTLPITGGTPRLITPMAPSYLHGWSPDGKELAYCAERNGNYDVYTIPAEGGEETRLT 240 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 ++ YSP I F S R G Q++ M+++GS+Q +++ D+ + + P SP G Sbjct: 241 TAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTFDETRNSWFPHISPDG 300 Query: 359 DLIAFTKF------SGEKFA-----IGVMKKDGSQERLLVE----DSNLQAPTWSPSGRS 403 + F + GE A + +M +G + + L++ + +W+P + Sbjct: 301 KSVVFITYYKGDLEPGEHLANKNVELRLMPANGGEPKTLLKLFGGQGTINVNSWAPDSKR 360 Query: 404 LIF 406 + F Sbjct: 361 IAF 363 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 9/181 (4%) Query: 265 FSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 S++G++ IS ++D IY++ + + T RL + + +SPD ++ + ++R Sbjct: 162 LSTDGQQIAISHGTKEDYKSRIYTLPI-TGGTPRLITPMAPSYLHGWSPDGKELAYCAER 220 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G +Y + + G ++ R++ E P +SP G I F + MK DGS+ Sbjct: 221 NGNYDVYTIPAEGGEETRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSE 279 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + + E N P SP G+S++F GD + L +N L PA +P Sbjct: 280 QTQMTFDETRNSWFPHISPDGKSVVFITYYKGDLEPGEH---LANKNVELRLMPANGGEP 336 Query: 441 Q 441 + Sbjct: 337 K 337 >gi|114561197|ref|YP_748710.1| amidohydrolase [Shewanella frigidimarina NCIMB 400] gi|114332490|gb|ABI69872.1| amidohydrolase [Shewanella frigidimarina NCIMB 400] Length = 1060 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++G++ I+ Sbjct: 73 DIYQIPIAGGEAKPLAQGIAWQMQPVYSPDGKYIAFTSDEDGGDNIWIMNADGTNPHAIT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSN----LQ 393 + P WSP L+A F+G + + + G + L E N L Sbjct: 133 TETFRLLNSPAWSPDSQYLVARKHFTGTRSLGAGEVWMFHVAGGEGVKLTERPNEQKDLG 192 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS+ Sbjct: 193 EPAYSPDGRYIYFSQ 207 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD ++VFE+ +++V KR+++ D + + P WS G I FT Sbjct: 369 AQVSPDGEKVVFEA----LGKIWVRDIKDGKHKRLTRLDDDINELFPQWSRDGKDIVFTT 424 Query: 366 FSGEK-FAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------ 417 ++ ++ + V+ G + ++L E PT+SP G +++ + + G + Sbjct: 425 WNDQQQGTVSVVSARGGKAKVLTNEPGKYVEPTFSPDGEYIVYRKARGGYMTPRTWSQEP 484 Query: 418 -LYSIDLNGRNETLI----NTPAYASDPQWVGFMD 447 LY +D+ G+ T + + P + +D V FMD Sbjct: 485 GLYKVDIKGKQSTKLTASGHQPQFGNDSDRVYFMD 519 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 63/282 (22%), Positives = 119/282 (42%), Gaps = 59/282 (20%) Query: 208 PSRDQILFEPRFSPNQQKVAYA---------TYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 P+ + L EP +SP+ + + ++ Y + + +Y +I R + G+ Sbjct: 185 PNEQKDLGEPAYSPDGRYIYFSQDSTPGKTFHYSKDSVKGIY----KIKRYDTQTGDIEV 240 Query: 259 MI------LAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTL---------- 301 +I + P S +GK L +++D +Y++DL+S +L + L Sbjct: 241 LIEGTGGAIRPTPSPDGK-TLAYIKRDGFQSTLYTLDLKSGEETKLYDKLDRDMQETWAI 299 Query: 302 -FINISASYSPDSSQIVFESDREGK--------EQLYVMQSNGSDQK------RISQDKE 346 + + S++ D+ IVF + +GK +Q+ + + S Q+ R +Q+ + Sbjct: 300 HGVYPTMSWTKDNKHIVFWA--KGKINKLDVDSKQVTDIPFSVSTQRDIQPSVRFTQNLD 357 Query: 347 ASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL--LVEDSNLQAPTWS 398 FD SP G+ + F G+ + + KDG +RL L +D N P WS Sbjct: 358 KDEFDVKMLRMAQVSPDGEKVVFEAL-GKIWVRDI--KDGKHKRLTRLDDDINELFPQWS 414 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G+ ++F+ D G+ G+ + L N P +P Sbjct: 415 RDGKDIVFTTWNDQQQGTVSVVSARGGKAKVLTNEPGKYVEP 456 >gi|327190629|gb|EGE57717.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CNPAF512] Length = 276 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G++ +D+ DIY++ + RLT+ N YS D I F S R G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGIETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D + ++F SP+ D + + F + +M Sbjct: 176 LMQIWRIHPDGTGLEQVTSDNQGNWFAHP-SPKNDKVLILSYDPSVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG + L E + P WSP G + R Sbjct: 235 DMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVR 270 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 33/223 (14%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H IS D + + +K +F K+S+ ++ +G R +T +Q + Sbjct: 70 HGISPDGTEIVISDKSEFG---------------KSSIYILPIEGGTPRLVT--ENQPSY 112 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLM--DTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 +SP+ +++AY D D+ +Y + D I+ R+ + P +S++G+ Sbjct: 113 WHGWSPDGRQLAYCGIRD-DLFDIYTISVDGGIE---TRLTHGEGRNDGPDYSADGQWIY 168 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI--------VFESDREGK 325 + + M I+ + E++T+ N A SP + ++ VF+ R+ Sbjct: 169 FNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFAHPSPKNDKVLILSYDPSVFDHPRDLD 228 Query: 326 EQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKF 366 +L +M +G + K + + + + P WSP GD A+ ++ Sbjct: 229 VRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVRY 271 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%) Query: 355 SPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G I + K K +I ++ +G RL+ E+ WSP GR L + + D Sbjct: 73 SPDGTEIVISDKSEFGKSSIYILPIEGGTPRLVTENQPSYWHGWSPDGRQLAYCGIR--D 130 Query: 414 TGSKLYSIDLNGRNETLI-------NTPAYASDPQWVGF 445 +Y+I ++G ET + + P Y++D QW+ F Sbjct: 131 DLFDIYTISVDGGIETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|284040960|ref|YP_003390890.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] gi|283820253|gb|ADB42091.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] Length = 667 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 49/269 (18%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-------YA 229 I FVS G K + +MDR G + LT + L E +SP+ +K+A YA Sbjct: 105 ISFVSAR--QGATKGQIWLMDRRGGEAKKLTDLKTD-LEEYVWSPDGKKIAMVLRDPDYA 161 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + + Y++D F ++ K L + ++ +Y D+ Sbjct: 162 DSAKTKVRKPYVLDRY------------------HFKADVKGYL----EKGSVHLYVYDV 199 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFES------DREGKEQLYVMQS-NGSDQKRIS 342 S + LT + S ++SPD SQ+ F S DR +YV+ + G+ K+++ Sbjct: 200 ASKKLDTLTTGNYDETSPTWSPDGSQLAFVSNRTEDPDRNQNTDIYVIDAKKGATMKQLT 259 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSG-------EKFAIGVMKKDGSQERLLVE--DSNLQ 393 S +P WSP G IA+T+ + ++ + V+ +DG + LL + D ++ Sbjct: 260 T-WPGSDNNPEWSPDGKRIAYTRSTASGNFLMYDQPVLAVISRDGGEPTLLSKALDRPVR 318 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSID 422 P W+ G+++ + D T Y++D Sbjct: 319 NPRWAKDGQTIGVLVQDDRQTYVGQYTLD 347 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 47/226 (20%) Query: 263 PRFSSNGK-----RALISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +GK + + KD+ D++ V T +LTNT A +SPD I Sbjct: 46 PQISPDGKWVTYGLSTVDTTKDKRNSDLWMVSWDGKETVQLTNTPEGESRARFSPDGKYI 105 Query: 317 VFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------- 363 F S R+G K Q+++M G + K+++ D + + VWSP G IA Sbjct: 106 SFVSARQGATKGQIWLMDRRGGEAKKLT-DLKTDLEEYVWSPDGKKIAMVLRDPDYADSA 164 Query: 364 ------------------TKFSGEKFAIGVMKKDGSQER---LLVEDSNLQAPTWSPSGR 402 K EK ++ + D + ++ L + + +PTWSP G Sbjct: 165 KTKVRKPYVLDRYHFKADVKGYLEKGSVHLYVYDVASKKLDTLTTGNYDETSPTWSPDGS 224 Query: 403 SLIF--SRKKDGD--TGSKLYSIDL--NGRNETLINTPAYASDPQW 442 L F +R +D D + +Y ID + L P ++P+W Sbjct: 225 QLAFVSNRTEDPDRNQNTDIYVIDAKKGATMKQLTTWPGSDNNPEW 270 >gi|83816740|ref|YP_444453.1| hypothetical protein SRU_0307 [Salinibacter ruber DSM 13855] gi|83758134|gb|ABC46247.1| hypothetical protein SRU_0307 [Salinibacter ruber DSM 13855] Length = 995 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 15/164 (9%) Query: 261 LAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSN----------ATERLTNTLFINISASY 309 +AP S +G+ A IS ++ + ++Y D ++ T FI+ S ++ Sbjct: 234 IAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRFISSSGTW 293 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD ++ F S +G Q+ V + +R S D S +P WSP G +AF G Sbjct: 294 SPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPAWSPDGTRLAFAGTDG 353 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 + V+ + R L D ++LQ PTW+P G ++ F+ + Sbjct: 354 GISDLYVLNLETESVRQLTNDRYADLQ-PTWAPDGETIAFATDR 396 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%) Query: 199 DGANIRYLTPSRD--QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR-------IDRA 249 D A L P + +I P SP+ + VA+ + + +Y+ D +DRA Sbjct: 216 DSAGQTVLAPETNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRA 275 Query: 250 PKRIGNFRSMIL---APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI- 305 G+F ++ + +S +G+R +D I ++ ER + + Sbjct: 276 -GTTGHFNALRFISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSM 334 Query: 306 -SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + ++SPD +++ F G LYV+ ++++ D+ A P W+P G+ IAF Sbjct: 335 KNPAWSPDGTRLAFAGTDGGISDLYVLNLETESVRQLTNDRYAD-LQPTWAPDGETIAFA 393 Query: 365 KFSGE----------KFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 E +G++ + R D+ P ++P G+SL F +DG Sbjct: 394 TDRAETNLETLSPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDG 453 Query: 413 DTGSKLYSIDLN 424 +Y +DL+ Sbjct: 454 F--KDVYRMDLS 463 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 298 TNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQS-NGSDQKRISQDKEASYFDPV-- 353 TN INI+ S SPD + F S+RE LYV + G + + +F+ + Sbjct: 227 TNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRF 286 Query: 354 ------WSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVED--SNLQAPTWSPSGRSL 404 WSP G +AF I V D ER D ++++ P WSP G L Sbjct: 287 ISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPAWSPDGTRL 346 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 F+ G S LY ++L + + YA P W Sbjct: 347 AFAGTDGGI--SDLYVLNLETESVRQLTNDRYADLQPTWA 384 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 13/140 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ ++A+A D I +Y+++ + +++ N R L P ++ +G+ + Sbjct: 337 PAWSPDGTRLAFAGTDG-GISDLYVLNLETESV-RQLTNDRYADLQPTWAPDGETIAFAT 394 Query: 277 QKDEA----------MDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + E MD+ VD+ S T R ++ + ++PD + F SD++G Sbjct: 395 DRAETNLETLSPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDGF 454 Query: 326 EQLYVMQSNGSDQKRISQDK 345 + +Y M + D+ R+++ K Sbjct: 455 KDVYRMDLSSGDRFRVTRLK 474 >gi|255348980|ref|ZP_05380987.1| translocation protein TolB [Chlamydia trachomatis 70] gi|255503519|ref|ZP_05381909.1| translocation protein TolB [Chlamydia trachomatis 70s] gi|255507197|ref|ZP_05382836.1| translocation protein TolB [Chlamydia trachomatis D(s)2923] gi|289525641|emb|CBJ15122.1| outer membrane component of membrane transport system [Chlamydia trachomatis Sweden2] gi|296435205|gb|ADH17383.1| translocation protein TolB [Chlamydia trachomatis E/150] gi|296438924|gb|ADH21077.1| translocation protein TolB [Chlamydia trachomatis E/11023] Length = 431 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 11/284 (3%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 103 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + + P + AY + + ++T A K Sbjct: 163 ELWSVDYDGQHLYPLT-NEHSLSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 221 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVDLQSNA---TERLTNTLF-INI 305 +I + P FS K +D D++ S L + A ++L N F Sbjct: 222 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 281 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ S R+ K + P WSP G IAF Sbjct: 282 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLIKKYRNSSCPTWSPDGKKIAFC 341 Query: 365 KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 I V G E+L + ++P+W+ L++S Sbjct: 342 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYS 385 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 27/178 (15%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSS--QIVFESDREGKEQLYVMQSNGSDQKR 340 +++SVD LTN ++++ ++ S ++ S + G ++++ N K+ Sbjct: 163 ELWSVDYDGQHLYPLTNEHSLSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGKK 222 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTK------------FSGEKFAIGVMKKDGSQERLLVE 388 I + + F P +SP+ L+AF FS AIG KK LL E Sbjct: 223 I-LAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKK------LLNE 275 Query: 389 DSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET---LINTPAYASDPQW 442 Q P++SP G L+F KDG ++Y + ++ + LI +S P W Sbjct: 276 AFGTQGNPSFSPDGTRLVFVSNKDGT--PRIYQMQISPEQHSPRLLIKKYRNSSCPTW 331 >gi|82621714|gb|ABB86530.1| putative aminopeptidase [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3'] Length = 354 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ DI+ DL N +LT+ + A+ SP +IVF S R G LY M +G++ K Sbjct: 139 DSFDIFISDLDGNIINQLTDEKGYDAEATVSPLGDKIVFTSTRNGDIDLYTMNIDGANVK 198 Query: 340 RISQD---KEASYFDPVWS--------PQG--------DLIAFTKFSGEKFAIGVMKKDG 380 +I+ D ++F P S P+ DL+ + + + DG Sbjct: 199 QITFDLGYDGGAFFSPDGSKIIFRSSRPKSEEQIKEYQDLLDQGLVQPTEMELYICDSDG 258 Query: 381 SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGRN-------ETL 430 R L + N +P + PSG ++FS + + G LY IDL+G+N ET Sbjct: 259 KNLRQLTDLGNANWSPVFHPSGEKILFSSNFESERGFPFNLYMIDLDGKNLTRVTHSETF 318 Query: 431 INTPAYASDPQWVGF 445 P ++ D + + F Sbjct: 319 DAFPVFSRDGKKLAF 333 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 32/224 (14%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + K + YD DI L I++ G ++P G + + + ++ + Sbjct: 130 EGKYVWPIYDSFDIFISDLDGNIINQLTDEKGYDAEATVSPL----GDKIVFTSTRNGDI 185 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE---------------- 326 D+Y++++ +++T L + A +SPD S+I+F S R E Sbjct: 186 DLYTMNIDGANVKQITFDLGYDGGAFFSPDGSKIIFRSSRPKSEEQIKEYQDLLDQGLVQ 245 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEK---FAIGVMKK 378 +LY+ S+G + ++++ A++ PV+ P G+ I F + F E+ F + ++ Sbjct: 246 PTEMELYICDSDGKNLRQLTDLGNANW-SPVFHPSGEKILFSSNFESERGFPFNLYMIDL 304 Query: 379 DGSQERLLVEDSNLQA-PTWSPSGRSLIFS--RKKDGDTGSKLY 419 DG + A P +S G+ L FS R +G + L+ Sbjct: 305 DGKNLTRVTHSETFDAFPVFSRDGKKLAFSSNRNNNGTRETNLF 348 >gi|332704880|ref|ZP_08424968.1| WD40-like beta Propeller containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332555029|gb|EGJ52073.1| WD40-like beta Propeller containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 440 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 74/339 (21%), Positives = 146/339 (43%), Gaps = 18/339 (5%) Query: 111 LVTGRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITG 168 L+T G D + V FR+++ + G+++ P IA + + + +TG Sbjct: 110 LLTTSAWTPGADGKASVAFRVYETFTGTMLFGQEYADIKPVHMPDIADSFCSRLMEVLTG 169 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 G F SR+ FV + SG + V G N R +T S + P +S + +++ + Sbjct: 170 RVGFFQSRLAFVRKD-QSG---KEIWVAGPTGYNARKIT-SLGGVNTSPAWSLDGKRLLF 224 Query: 229 A-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL-ISVQKDEAMDIYS 286 + +L + MDT + G S +++P + +G+ A+ + ++ + + Sbjct: 225 THVAKTQHMLGMADMDTGKVQTVDLPG---SSVISPTYMPDGRLAVTLDIEGQPNIYLLG 281 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D + T L + I++S S+ ++ F S R G ++V+ +R++ + + Sbjct: 282 RDWKPTGTP-LAKSWSIDVSPSFDRAGRKMAFVSGRLGNPHIFVLDIPTGKVQRVTYEGK 340 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLI 405 + +P SP G+ +AF++ + I V+ ER + + P++ P G + Sbjct: 341 YNT-NPTMSPDGNFVAFSRDTDVGHRIFVIDLRTGLERQVTFGPGFDEEPSFGPEGYFIA 399 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWV 443 FS + G KLY +G ++ T A P W Sbjct: 400 FSSSRSGI--YKLYLTTRHGDEPVMLQTGSGEARAPSWT 436 >gi|294506198|ref|YP_003570256.1| hypothetical protein SRM_00383 [Salinibacter ruber M8] gi|294342526|emb|CBH23304.1| Conserved hypothetical protein [Salinibacter ruber M8] Length = 1072 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 15/164 (9%) Query: 261 LAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSN----------ATERLTNTLFINISASY 309 +AP S +G+ A IS ++ + ++Y D ++ T FI+ S ++ Sbjct: 311 IAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRFISSSGTW 370 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD ++ F S +G Q+ V + +R S D S +P WSP G +AF G Sbjct: 371 SPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPAWSPDGARLAFAGTDG 430 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 + V+ + R L D ++LQ PTW+P G ++ F+ + Sbjct: 431 GISDLYVLNLETESVRQLTNDRYADLQ-PTWAPDGETIAFATDR 473 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%) Query: 199 DGANIRYLTPSRD--QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR-------IDRA 249 D A L P + +I P SP+ + VA+ + + +Y+ D +DRA Sbjct: 293 DSAGQTVLAPETNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRA 352 Query: 250 PKRIGNFRSMIL---APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI- 305 G+F ++ + +S +G+R +D I ++ ER + + Sbjct: 353 -GTTGHFNALRFISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSM 411 Query: 306 -SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + ++SPD +++ F G LYV+ ++++ D+ A P W+P G+ IAF Sbjct: 412 KNPAWSPDGARLAFAGTDGGISDLYVLNLETESVRQLTNDRYAD-LQPTWAPDGETIAFA 470 Query: 365 KFSGE----------KFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 E +G++ + R D+ P ++P G+SL F +DG Sbjct: 471 TDRAETNLETLSPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDG 530 Query: 413 DTGSKLYSIDLN 424 +Y +DL+ Sbjct: 531 F--KDVYRMDLS 540 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 298 TNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQS-NGSDQKRISQDKEASYFDPV-- 353 TN INI+ S SPD + F S+RE LYV + G + + +F+ + Sbjct: 304 TNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRF 363 Query: 354 ------WSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVED--SNLQAPTWSPSGRSL 404 WSP G +AF I V D ER D ++++ P WSP G L Sbjct: 364 ISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPAWSPDGARL 423 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 F+ G S LY ++L + + YA P W Sbjct: 424 AFAGTDGGI--SDLYVLNLETESVRQLTNDRYADLQPTWA 461 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 13/140 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ ++A+A D I +Y+++ + +++ N R L P ++ +G+ + Sbjct: 414 PAWSPDGARLAFAG-TDGGISDLYVLNLETESV-RQLTNDRYADLQPTWAPDGETIAFAT 471 Query: 277 QKDEA----------MDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + E MD+ VD+ S T R ++ + ++PD + F SD++G Sbjct: 472 DRAETNLETLSPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDGF 531 Query: 326 EQLYVMQSNGSDQKRISQDK 345 + +Y M + D+ R+++ K Sbjct: 532 KDVYRMDLSSGDRFRVTRLK 551 >gi|15835502|ref|NP_297261.1| translocation protein TolB [Chlamydia muridarum Nigg] gi|270285685|ref|ZP_06195079.1| translocation protein TolB [Chlamydia muridarum Nigg] gi|270289693|ref|ZP_06195995.1| translocation protein TolB [Chlamydia muridarum Weiss] gi|301337080|ref|ZP_07225282.1| translocation protein TolB [Chlamydia muridarum MopnTet14] gi|14195252|sp|Q9PJE1|TOLB_CHLMU RecName: Full=Protein tolB; Flags: Precursor gi|7190916|gb|AAF39683.1| tolB protein, putative [Chlamydia muridarum Nigg] Length = 426 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 11/286 (3%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGII 189 D K ++I + +P+ + H +D I+ +T G + +I+F S + + Sbjct: 96 DGKGAQKIFSLELSGNPSKDHQSIHEAADRIHFLLTHTPGISSGKIIFSLCSTNSSEELK 155 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L +D DG ++ LT + + P + AY + + ++T Sbjct: 156 QGELWSVDYDGQHLAPLT-NEHSLSVTPAWMHISHIPAYIYVSYKLGVPKIFLNTLSQPT 214 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVDLQSNA---TERLTNTLF-I 303 K+I + P FS K +D D++ S L + A ++L N F Sbjct: 215 GKKILAMQGNQFMPAFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGT 274 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIA 362 + S+SPD +++VF S+++G ++Y MQ R+ K + P WSP G IA Sbjct: 275 QGNPSFSPDGTRLVFVSNKDGTPRIYQMQIYPEQHPPRLLTKKYRNSSCPTWSPDGKKIA 334 Query: 363 FTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 F I V G E+L + ++P+W+ L++S Sbjct: 335 FCSVIKGVRQICVYDLASGRDEQLTTSAEHKESPSWAADSNHLVYS 380 >gi|221133936|ref|ZP_03560241.1| amidohydrolase [Glaciecola sp. HTCC2999] Length = 1122 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 47/87 (54%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D DI+ ++ + LT NI + SP+ QI F SDR+G ++VM +G++ Sbjct: 89 DTLGDIFISSIEGGDAQPLTQDFAWNIHPAVSPNGKQIAFISDRDGLSNVWVMNRDGTEL 148 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTK 365 ++++++K P WSP G+ I TK Sbjct: 149 RQVTKEKNNIIHAPKWSPDGEYILVTK 175 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 25/155 (16%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +PD IVF++ + +++ G D + ++QD A P SP G IAF Sbjct: 80 TPDGKHIVFDTLGD----IFISSIEGGDAQPLTQDF-AWNIHPAVSPNGKQIAFISDRDG 134 Query: 370 KFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSR----------------KKD 411 + VM +DG++ R + ++ N + AP WSP G ++ ++ Sbjct: 135 LSNVWVMNRDGTELRQVTKEKNNIIHAPKWSPDGEYILVTKGIMSSRSIPAGEIWMYHHT 194 Query: 412 GDTGSKLYSIDLNG-RNETLINTPAYASDPQWVGF 445 G TG + +NG +++ I PA++ D Q++ F Sbjct: 195 GGTGLAIKK-RVNGLKDQKNIADPAFSHDGQYIYF 228 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP----DSSQIVFESD 321 S +GK+AL +Y DLQS T+RLT N Y P D IV+ + Sbjct: 395 SPDGKKALFQALGK----LYIRDLQSGKTKRLTKQ---NEHDEYYPRYANDGKSIVYTTW 447 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + K + S + I + Y +P +SP G + + KF+G Sbjct: 448 HDQKLGAVRIVSAKGGKGDIITSQPGHYVEPAFSPDGKKVTYRKFTG 494 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 108/256 (42%), Gaps = 47/256 (18%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 ++ VM+RDG +R +T ++ I+ P++SP+ + + ++ +M +R A + Sbjct: 137 NVWVMNRDGTELRQVTKEKNNIIHAPKWSPDGEYI---------LVTKGIMSSRSIPAGE 187 Query: 252 --RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISAS 308 + LA + NG + QK+ A +S D Q T+ +T N Sbjct: 188 IWMYHHTGGTGLAIKKRVNG----LKDQKNIADPAFSHDGQYIYFTQDITGGFRFN---- 239 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 Y+ D +F R +E NG +++ IS A P SP G +AF + Sbjct: 240 YNRDPLTSIFAITRINRE-------NGEEERFISGTGGAVV--PTPSPDGRYVAFIRRIQ 290 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAP----------TWSPSGRSLIFSRKKDGDTGS 416 EK A+ + + ER + D ++Q W+P + L+F T Sbjct: 291 EKTALFLKDLETGSERAIYHDLERDMQEGFGSEGYFSYFDWTPDSQELVFW------TAG 344 Query: 417 KLYSIDLNGRNETLIN 432 K++ +++N ++ +N Sbjct: 345 KIHRLNINDQSLNTLN 360 >gi|196231115|ref|ZP_03129975.1| Periplasmic component of the Tol biopolymer transport system-like protein [Chthoniobacter flavus Ellin428] gi|196224945|gb|EDY19455.1| Periplasmic component of the Tol biopolymer transport system-like protein [Chthoniobacter flavus Ellin428] Length = 306 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-GK----EQL 328 ++ +KD + + S+D + +++ LF +IS PD +++ F ++ + GK + Sbjct: 34 LAYEKDRRVWVASID--GSGAKKIGTGLFPDIS----PDGTRVAFNTEEQTGKTAWARHI 87 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 V++ Q + + P WSP G IAFT + G + G++ DG+ + + + Sbjct: 88 AVVELASGKQTVFKDVPGDNAYYPRWSPDGTHIAFTLYDGHNWHFGLINADGTGFKYIRK 147 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + L +P WSP G+SL K+ +Y I L+G Sbjct: 148 SKDAEGTLYSPCWSPDGKSLFAQDMKN------IYRIGLDG 182 >gi|197122051|ref|YP_002134002.1| amidohydrolase [Anaeromyxobacter sp. K] gi|196171900|gb|ACG72873.1| amidohydrolase [Anaeromyxobacter sp. K] Length = 1042 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 43/240 (17%) Query: 191 NSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 N L +MD GA R LT P Q +P +S + ++AYA+ D +Y++D + Sbjct: 341 NRLWLMDVGGAP-RPLTEGPYYAQ---DPAWSRDGTRLAYAS-DKGGTADLYVLDV-VTG 394 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +R+ + +AP +S +G R +D+A + +DL + A ++ LF S Sbjct: 395 AEQRVTSLPGAEVAPAWSPDGGRLAF---QDQAGATHVLDLATGAVRQVVAPLFAPGRPS 451 Query: 309 YSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDKEASYFD---------P 352 +S D + + REG Q+ + + ++ +EA+ F+ P Sbjct: 452 WSADGRTLALAALKPYTRRFREGTSQILTVDV----ESGATRYQEAAPFESLSTRGDDGP 507 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD------GSQERLLVEDSNLQAPTWSPSGRSLIF 406 VWSP G +AF S + VM D G R+ E ++ APTWS R L++ Sbjct: 508 VWSPDGTALAFVMQS----TLWVMPVDASGRAAGPAVRITSEPTD--APTWSGDSRRLLY 561 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 ++S+ RLT+ L YSP + F++ G ++ M+ +G++ ++++ Sbjct: 65 LWSLPRGGGEARRLTDGLLEPARPDYSPRGDLVAFQAYAGGTFHIWTMRPDGTEVRQLTS 124 Query: 344 ----DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD---GSQERLLVEDSNLQAPT 396 D+E P +SP G IAF+ + + V D G+ R ++ P Sbjct: 125 GHGDDRE-----PRFSPDGTRIAFSSDRAFQGSYDVWVADVATGALTRWTEASADEFEPA 179 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 W+P G + F G TG+ + ++D G TL PA A Sbjct: 180 WTPDGGEIAFVSGA-GSTGTAIEAVDAAGTRRTLATAPAGA 219 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 6/105 (5%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N++ + SPD +V D +G L+ + G + +R++ D P +SP+GDL+AF Sbjct: 45 NVAVTASPDGRDLVL--DLQGV--LWSLPRGGGEARRLT-DGLLEPARPDYSPRGDLVAF 99 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS 407 ++G F I M+ DG++ R L + + P +SP G + FS Sbjct: 100 QAYAGGTFHIWTMRPDGTEVRQLTSGHGDDREPRFSPDGTRIAFS 144 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 31/216 (14%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P R + P SP+ +V + + + R++LMD + AP+ + P +S Sbjct: 317 PRRALGIVAPALSPDGTRVVF-----QALNRLWLMD--VGGAPRPLTEGPYYAQDPAWSR 369 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R + K D+Y +D+ + A +R+T+ ++ ++SPD ++ F+ D+ G Sbjct: 370 DGTRLAYASDKGGTADLYVLDVVTGAEQRVTSLPGAEVAPAWSPDGGRLAFQ-DQAGATH 428 Query: 328 LYVMQSNGSDQKRISQDKEASYFD---PVWSPQGDLIAFTKF--------SGEKFAIGVM 376 + + + Q A F P WS G +A G + V Sbjct: 429 VLDLATGAVRQ------VVAPLFAPGRPSWSADGRTLALAALKPYTRRFREGTSQILTVD 482 Query: 377 KKDGS---QERLLVEDSNLQ---APTWSPSGRSLIF 406 + G+ QE E + + P WSP G +L F Sbjct: 483 VESGATRYQEAAPFESLSTRGDDGPVWSPDGTALAF 518 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 6/149 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S G I+++ +LT+ + +SPD ++I F SDR Sbjct: 88 PDYSPRGDLVAFQAYAGGTFHIWTMRPDGTEVRQLTSGHGDDREPRFSPDGTRIAFSSDR 147 Query: 323 --EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKD 379 +G ++V R ++ A F+P W+P G IAF +G AI + Sbjct: 148 AFQGSYDVWVADVATGALTRWTE-ASADEFEPAWTPDGGEIAFVSGAGSTGTAIEAVDAA 206 Query: 380 GSQERLLVEDSN--LQAPTWSPSGRSLIF 406 G++ L + L +P+ SP G L + Sbjct: 207 GTRRTLATAPAGARLNSPSISPDGAHLAW 235 >gi|316967493|gb|EFV51909.1| conserved hypothetical protein [Trichinella spiralis] Length = 382 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 24/164 (14%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-- 351 T LT+ F N + SPD IVF S R G L++M+ NG++ I+Q + + +D Sbjct: 156 THYLTDDSFYNAEGAVSPDGKSIVFTSTRGGDLDLWLMRLNGTEVVNITQLTDITGYDGG 215 Query: 352 PVWSPQGDLIAFTKFSGE--------------------KFAIGVMKKDGSQERLLVEDSN 391 +SP GD I + + + I M DGS ++ L Sbjct: 216 AFFSPLGDKIVYRAYHPKTAEEITNYFQLLNLSITKPLHMEIFTMNADGSDQKQLTNFGY 275 Query: 392 LQ-APTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINT 433 AP + P G +IFS G+ L+ ID +G N I T Sbjct: 276 ASWAPYFYPDGSKIIFSSNHHGNHSVFNLFLIDQDGNNLEQITT 319 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 49/85 (57%), Gaps = 4/85 (4%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE---QLYV 330 +S+ K M+I++++ + ++LTN + + + + PD S+I+F S+ G L++ Sbjct: 247 LSITKPLHMEIFTMNADGSDQKQLTNFGYASWAPYFYPDGSKIIFSSNHHGNHSVFNLFL 306 Query: 331 MQSNGSDQKRISQDKEASYFDPVWS 355 + +G++ ++I+ + F P++S Sbjct: 307 IDQDGNNLEQITTNPGLDMF-PMFS 330 >gi|299537211|ref|ZP_07050514.1| putative peptidase [Lysinibacillus fusiformis ZC1] gi|298727452|gb|EFI68024.1| putative peptidase [Lysinibacillus fusiformis ZC1] Length = 662 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL-ISVQKDEAMD-----IYSVDLQSNATE 295 M ++ P+ + + +S + P+ S +G + I + DE + ++ ++L+ + Sbjct: 1 MTSKQGIQPEDLYHLKS-VADPQLSPDGTEVVYIETRMDEKKNDYISNLFYINLKDKTPQ 59 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + T S +SPD SQI F S R GK Q+YV+ G + K+++ K + PVWS Sbjct: 60 QWTFGEDRTSSPVWSPDGSQIAFLSTRTGKSQIYVLSKAGGEAKQVTHCKNGA-TSPVWS 118 Query: 356 PQGDLIAFTKFSGE 369 P G IAF+ G+ Sbjct: 119 PCGKKIAFSVVLGK 132 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%) Query: 310 SPDSSQIVF-ESDREGKEQLYV-------MQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SPD +++V+ E+ + K+ Y+ ++ Q +D+ +S PVWSP G I Sbjct: 24 SPDGTEVVYIETRMDEKKNDYISNLFYINLKDKTPQQWTFGEDRTSS---PVWSPDGSQI 80 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFS 407 AF K I V+ K G + + + N +P WSP G+ + FS Sbjct: 81 AFLSTRTGKSQIYVLSKAGGEAKQVTHCKNGATSPVWSPCGKKIAFS 127 >gi|117918478|ref|YP_867670.1| amidohydrolase [Shewanella sp. ANA-3] gi|117610810|gb|ABK46264.1| amidohydrolase [Shewanella sp. ANA-3] Length = 1062 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDADGGDNIWIMDADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSN--- 391 + P WSP + + K +GE + V +G + L E N Sbjct: 133 TETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDEK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 14/139 (10%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S++ FE+ GK L + + + D E Y P WS G I FT ++ Sbjct: 372 SPDGSKVAFEA--LGKIWLKTLPDGKMTRLTELGNDIEELY--PQWSRDGKNIVFTTWND 427 Query: 369 E-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-------LY 419 + + + V+ K G ++L E PT+SP+G +++ + + G + LY Sbjct: 428 QDQGTVQVISAKGGKAKQLTTETGKYVEPTFSPNGELVVYRKTQGGHLTPRTWSQEPGLY 487 Query: 420 SIDLNGRNETLINTPAYAS 438 +DL + I+ Y + Sbjct: 488 KVDLKTKQNKKISAEGYQA 506 >gi|225010671|ref|ZP_03701141.1| amidohydrolase [Flavobacteria bacterium MS024-3C] gi|225005224|gb|EEG43176.1| amidohydrolase [Flavobacteria bacterium MS024-3C] Length = 1167 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 4/130 (3%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y++ + +T+ L + +SPD + + SD+ G + +++M + + +IS Sbjct: 77 DLYTMPISGGNATAITHGLAYEVHPRFSPDGKSLAYISDKSGSDNIWLMDLSSKEDTQIS 136 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQA--PTWSP 399 ++++ ++F WSP GD + K + + KDG L+ E L+A P + Sbjct: 137 KEQKNNFFSVAWSPDGDYLVGAK-GRRNIKLHLYHKDGGGGAPLISEPKGLKAIDPFFGA 195 Query: 400 SGRSLIFSRK 409 G++L FS++ Sbjct: 196 DGKTLYFSQR 205 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 12/184 (6%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFE 319 + PRFS +GK K + +I+ +DL S +++ N S ++SPD +V Sbjct: 99 VHPRFSPDGKSLAYISDKSGSDNIWLMDLSSKEDTQISKEQKNNFFSVAWSPDGDYLVGA 158 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KF 371 R + + G IS+ K DP + G + F++ +G ++ Sbjct: 159 KGRRNIKLHLYHKDGGGGAPLISEPKGLKAIDPFFGADGKTLYFSQRNGAWNYNAQLPQY 218 Query: 372 AIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 +G +DG+ + + + PT S G+ L++ + + TG L DLN E+ Sbjct: 219 QVGTYSMEDGATDVITSRYGSAFTPTLSKDGKWLVYGTRFEDQTG--LILRDLNTGEESW 276 Query: 431 INTP 434 + P Sbjct: 277 LAYP 280 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 258 SMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 S I + S +GKR A ++ + +Y +DL + +R+T F ++SPD SQI Sbjct: 357 SQIRDAKPSPDGKRLAFTALNR-----LYVMDLPNGTPKRVTTHDFTEAQPAWSPDGSQI 411 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AIG 374 VF + + LY + Y P WS D I F S + + AIG Sbjct: 412 VFTTWNGSEGHLYKARMGRRTAVVKLTQTTGIYTQPRWSYAKDRIVFLAGSNQVYKDAIG 471 Query: 375 VMKKDGSQERLLV 387 M + +++ + + Sbjct: 472 PMASNATEDLVWI 484 >gi|224538045|ref|ZP_03678584.1| hypothetical protein BACCELL_02934 [Bacteroides cellulosilyticus DSM 14838] gi|224520335|gb|EEF89440.1| hypothetical protein BACCELL_02934 [Bacteroides cellulosilyticus DSM 14838] Length = 1066 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++IVF K +Y + + G +++ +++ PVWSP G IAF Sbjct: 31 SPDGTEIVFCY----KGDIYKVPTEGGAATQLTT-QDSYECTPVWSPDGKQIAFASDRNG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS---------KLY 419 F I VM +G R L S + P T++P G+ ++FS GS +LY Sbjct: 86 NFDIFVMPANGGTARRLTTHSTNEVPATFTPDGKYILFSASIQDPAGSALFPSAAMTELY 145 Query: 420 SI-DLNGRNETLINTPAYA 437 + + GR E ++ TPA A Sbjct: 146 KVPSVGGRTEQVLGTPAEA 164 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + A +LT + +SPD QI F SDR G ++VM +NG +R++ Sbjct: 44 DIYKVPTEGGAATQLTTQDSYECTPVWSPDGKQIAFASDRNGNFDIFVMPANGGTARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + ++P G I F+ Sbjct: 104 T-HSTNEVPATFTPDGKYILFS 124 >gi|88802620|ref|ZP_01118147.1| putative protease [Polaribacter irgensii 23-P] gi|88781478|gb|EAR12656.1| putative protease [Polaribacter irgensii 23-P] Length = 1081 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 13/156 (8%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVF 318 ++ P S G+RA+ + + I++V ++ LTN+ + + S +SP+ ++ + Sbjct: 304 LINPNVSPKGERAIFEYRGE----IFTVPKKNGTWRNLTNSSGVADRSPIWSPNGDKVAW 359 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ Q+ + NG++Q+ I YF P WSP G IA+T + F I ++ Sbjct: 360 FSDASGEYQMVIADQNGANQETIKLPNPTFYFQPDWSPDGKHIAYTDTN---FVIWILNL 416 Query: 379 DGSQERLLVEDSNLQA-----PTWSPSGRSLIFSRK 409 + + D P WSP + ++++ Sbjct: 417 KTKKITKVAADGYAHPNRTMNPKWSPDSDWIAYAKQ 452 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +GK + Q D DI+ V +RLT +++ ++PD +I+F SDR Sbjct: 65 PHFSKDGKWIAFTAQYDGNTDIFLVSTSGGEPKRLTYHPSNDVAQGWTPD-GKILFRSDR 123 Query: 323 EGK 325 K Sbjct: 124 ASK 126 >gi|218462472|ref|ZP_03502563.1| putative periplasmic component of the Tol biopolymer transport system [Rhizobium etli Kim 5] Length = 153 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 13/143 (9%) Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D+ DIY++ + A RLT+ N YS D I F S R G Q++ + +G+ Sbjct: 7 RDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTGLMQIWRIHPDGTG 66 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE- 388 ++++ D ++F SP+ D + + F + +M DG + L E Sbjct: 67 LEQVTSDNYGNWFAHP-SPKNDKVLILSYDPSVFDHPRDLDVRLRLMDMDGGNLKTLFEL 125 Query: 389 ---DSNLQAPTWSPSGRSLIFSR 408 + P WSP G + R Sbjct: 126 FGGQGTINVPCWSPDGEEFAYVR 148 >gi|220916821|ref|YP_002492125.1| amidohydrolase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954675|gb|ACL65059.1| amidohydrolase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1040 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 43/240 (17%) Query: 191 NSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 N L +MD GA R LT P Q +P +S + ++AYA+ D +Y++D + Sbjct: 341 NRLWLMDVGGAP-RPLTEGPYYAQ---DPAWSRDGTRIAYAS-DKGGTADLYVLDV-VTG 394 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +R+ + +AP +S +G R +D+A + +DL + A ++ LF + Sbjct: 395 AEQRVTSLPGAEVAPAWSPDGGRLAF---QDQAGATHVLDLATGAVRQVVAPLFAPGRPT 451 Query: 309 YSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDKEASYFD---------P 352 +S D + + REG Q+ + + ++ +EA+ F+ P Sbjct: 452 WSADGRTLALAALKPYTRRFREGTSQILTVDV----ESGATRYQEAAPFESLSTRGDDGP 507 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD------GSQERLLVEDSNLQAPTWSPSGRSLIF 406 VWSP G +AF S + VM D G R+ E ++ APTWS R L++ Sbjct: 508 VWSPDGTALAFVMQS----TLWVMPVDASGRAAGPAVRITSEPTD--APTWSGDSRRLLY 561 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 13/161 (8%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 ++S+ RLT+ L YSP + F++ G ++ M+ +G+D ++++ Sbjct: 65 LWSLPRGGGEARRLTDGLLEPARPDYSPRGDLVAFQAYAGGTFHIWTMRPDGTDVRQLTS 124 Query: 344 ----DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD---GSQERLLVEDSNLQAPT 396 D+E P +SP G IAF+ + + V D G+ R ++ P Sbjct: 125 GHGDDRE-----PRFSPDGTRIAFSSDRAFQGSYDVWVADVATGALTRWTEAPADEFEPA 179 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 W+P G + F G TG+ + ++D G TL PA A Sbjct: 180 WTPDGGEIAFVSGA-GSTGTAIEAVDAAGTRRTLATAPAGA 219 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 260 ILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I+AP S +G R + ++ + MD+ A LT + ++S D ++I + Sbjct: 323 IVAPALSPDGTRVVFQALNRLWLMDV------GGAPRPLTEGPYYAQDPAWSRDGTRIAY 376 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD+ G LYV+ ++R++ A P WSP G +AF +G + + Sbjct: 377 ASDKGGTADLYVLDVVTGAEQRVTSLPGAE-VAPAWSPDGGRLAFQDQAGATHVLDLAT- 434 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 G+ +++ PTWS GR+L + K Sbjct: 435 -GAVRQVVAPLFAPGRPTWSADGRTLALAALK 465 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 31/216 (14%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P R + P SP+ +V + + + R++LMD + AP+ + P +S Sbjct: 317 PRRALGIVAPALSPDGTRVVF-----QALNRLWLMD--VGGAPRPLTEGPYYAQDPAWSR 369 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R + K D+Y +D+ + A +R+T+ ++ ++SPD ++ F+ D+ G Sbjct: 370 DGTRIAYASDKGGTADLYVLDVVTGAEQRVTSLPGAEVAPAWSPDGGRLAFQ-DQAGATH 428 Query: 328 LYVMQSNGSDQKRISQDKEASYFD---PVWSPQGDLIAFTKF--------SGEKFAIGVM 376 + + + Q A F P WS G +A G + V Sbjct: 429 VLDLATGAVRQ------VVAPLFAPGRPTWSADGRTLALAALKPYTRRFREGTSQILTVD 482 Query: 377 KKDGS---QERLLVEDSNLQ---APTWSPSGRSLIF 406 + G+ QE E + + P WSP G +L F Sbjct: 483 VESGATRYQEAAPFESLSTRGDDGPVWSPDGTALAF 518 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 7/142 (4%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N++ + SPD +V D +G L+ + G + +R++ D P +SP+GDL+AF Sbjct: 45 NVAVTASPDGRDLVL--DLQGV--LWSLPRGGGEARRLT-DGLLEPARPDYSPRGDLVAF 99 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++G F I M+ DG+ R L + + P +SP G + FS + ++ D Sbjct: 100 QAYAGGTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDRAFQGSYDVWVAD 159 Query: 423 L-NGRNETLINTPAYASDPQWV 443 + G PA +P W Sbjct: 160 VATGALTRWTEAPADEFEPAWT 181 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 6/149 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S G I+++ +LT+ + +SPD ++I F SDR Sbjct: 88 PDYSPRGDLVAFQAYAGGTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDR 147 Query: 323 --EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKD 379 +G ++V R ++ A F+P W+P G IAF +G AI + Sbjct: 148 AFQGSYDVWVADVATGALTRWTE-APADEFEPAWTPDGGEIAFVSGAGSTGTAIEAVDAA 206 Query: 380 GSQERLLVEDSN--LQAPTWSPSGRSLIF 406 G++ L + L +P+ SP G L + Sbjct: 207 GTRRTLATAPAGARLSSPSISPDGAHLAW 235 >gi|89097995|ref|ZP_01170881.1| YuxL [Bacillus sp. NRRL B-14911] gi|89087158|gb|EAR66273.1| YuxL [Bacillus sp. NRRL B-14911] Length = 663 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 52/231 (22%) Query: 263 PRFSSNGKRALISVQKD-EAMDIYSVDLQSNATE------RLTNTLFINISASYSPDSSQ 315 P+ + NGK + + E D YS +L TE + T + N S +S D Q Sbjct: 23 PQLAPNGKDCVYTETVILEEKDAYSSNLYYINTEDQSAPVQWTFGTWRNHSPRWSHDGRQ 82 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-- 373 + F S+R GK Q++++ + G + ++++ K + +PVWSP G IAFT GE ++ Sbjct: 83 VAFVSNRSGKNQIHILSAAGGEARQLTYCKNGA-GNPVWSPDGSRIAFTVSLGEGESVND 141 Query: 374 --GVMKKD-----------------------------------GSQERLLVEDSNLQAPT 396 G +KD G+ E++ +++ + Sbjct: 142 REGGEEKDEKPAPLEVNKMRYKSDAQGFWNGKFTHIAIADTDTGNIEQVTEGENDYSLQS 201 Query: 397 WSPSGRSLIFSRKKDGDT----GSKLYSIDLNGR-NETLINTPAYASDPQW 442 WSP G+ L + GD GS Y I+L + E + Y + W Sbjct: 202 WSPDGKHLAVTADLSGDKDFSYGSDAYLINLETKEQEKITQGTGYFGNITW 252 >gi|218679898|ref|ZP_03527795.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CIAT 894] Length = 276 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G++ +D+ DIY++ + RLT N YS D I F S R G Sbjct: 116 WSPDGRQLAYCGIRDDFFDIYTISVDGGVETRLTYGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D + ++F SP+ D + + F + +M Sbjct: 176 LMQIWRIHPDGTGLEQVTSDNQGNWFAHP-SPKNDKVLILSYDPGVFDHPRDLDVRLRLM 234 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 + DG + L E + P WSP G + R Sbjct: 235 EMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVR 270 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 41/193 (21%), Positives = 86/193 (44%), Gaps = 26/193 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM------D 243 K+S+ ++ +G R +T +Q + +SP+ +++AY D D +Y + + Sbjct: 89 KSSIYILPIEGGTPRLVT--ENQPSYWHGWSPDGRQLAYCGIRD-DFFDIYTISVDGGVE 145 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 TR+ R P +S++G+ + + M I+ + E++T+ Sbjct: 146 TRLTYGEGRND-------GPDYSADGQWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQG 198 Query: 304 NISASYSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPV 353 N A SP + ++ VF+ R+ +L +M+ +G + K + + + + P Sbjct: 199 NWFAHPSPKNDKVLILSYDPGVFDHPRDLDVRLRLMEMDGGNLKTLFELFGGQGTINVPC 258 Query: 354 WSPQGDLIAFTKF 366 WSP GD A+ ++ Sbjct: 259 WSPDGDEFAYVRY 271 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAF- 363 + +++PD S ++ D LY + +G + ++ + D SP G I Sbjct: 27 APNFAPDGSYLLLNGD----GLLYRLPLDGGEVVQVDTGFAVNCNNDHGISPDGTEIVIS 82 Query: 364 --TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 T+F K +I ++ +G RL+ E+ WSP GR L + + D +Y+I Sbjct: 83 DKTEFG--KSSIYILPIEGGTPRLVTENQPSYWHGWSPDGRQLAYCGIR--DDFFDIYTI 138 Query: 422 DLNGRNETLI-------NTPAYASDPQWVGF 445 ++G ET + + P Y++D QW+ F Sbjct: 139 SVDGGVETRLTYGEGRNDGPDYSADGQWIYF 169 >gi|299137156|ref|ZP_07030338.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX8] gi|298600561|gb|EFI56717.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX8] Length = 747 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 17/193 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-ESDRE 323 FSS+GK ++ A ++ +L + +LT S +SPD SQI F + Sbjct: 497 FSSDGKS--VAYVSYPAGILWRANLDGSNPIQLTEPPVYPKSVRWSPDGSQIAFVNRTAD 554 Query: 324 GKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTK----FSGEKFAIGVMKK 378 G + ++V+ S+GS + +RIS D + DP WSP G I F+ + K + ++ Sbjct: 555 GVDVIFVVPSDGSGKPQRISPDDRQAETDPSWSPDGRRIVFSTSPNVGASAKSDLRILDI 614 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETL----INT 433 ++ L P WSP GRS+ DT S KL+++ +G+ TL + Sbjct: 615 ASHTAAIIPASDGLLVPHWSPDGRSIA---AMTLDTMSMKLFNLS-SGKWTTLYTGAVAF 670 Query: 434 PAYASDPQWVGFM 446 P ++ D +W+ ++ Sbjct: 671 PEWSHDGRWIYYV 683 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 266 SSNGKRALISVQ---KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 S +G LI Q + A ++S L + RL + + SA++SPD +IV+ S Sbjct: 282 SPDGSTLLIISQAGGQGPASSLWSFRLVGGSLHRLGSAVS---SAAWSPDGEKIVYAS-- 336 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + VM+ +GS+ RI+ Y + WSP GD I F+K + + DG+ Sbjct: 337 -ASGDISVMRRDGSEAHRIA--SSGGYVRSIAWSPNGDTIRFSK----DGLLWEVSADGA 389 Query: 382 QERLLV----EDSNLQAPTWSPSGR 402 R L+ + S + W+P GR Sbjct: 390 NLRQLLPGWSKSSTQWSGKWTPDGR 414 >gi|147797552|emb|CAN73514.1| hypothetical protein VITISV_037210 [Vitis vinifera] Length = 715 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 32/212 (15%) Query: 217 PRFSPNQQKVAYATYDD-----------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 P FSP ++AY + ++ T D KR G + P F Sbjct: 416 PSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDH--KRKGVVYTSA-GPTF 472 Query: 266 SSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++ + ++S+ D D+ + ++LT N S SPD I F S R G Sbjct: 473 ATESTKVDIVSINVD--------DVDQPSYKKLTTGGENNAFPSPSPDGKWIAFRSGRSG 524 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFT----KFSGEKFAIGVMKK 378 + LY+M + ++ I + E + D + WSP GD I F G F + V+ Sbjct: 525 YKNLYIMDAVXGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHP 584 Query: 379 DGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 +G+ R +V + P +SP G+S++F+ Sbjct: 585 NGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFT 616 >gi|159896545|ref|YP_001542792.1| WD40 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159889584|gb|ABX02664.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus ATCC 23779] Length = 620 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 24/160 (15%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + +AS SPD S++ F SDR GK Q++V +NG+ Q +++ D + + P WS G + + Sbjct: 418 DFNASVSPDGSKMAFVSDRSGKPQIFVSYTNGASQTQVTLD-DCDHQTPSWSADGRYLYW 476 Query: 364 TKFSGEKFAIGVMKKDGS---------------QERLLVEDSNLQA-----PTWSPSGRS 403 G + + + + + R V +N P SP G Sbjct: 477 ASNCGTNAKYNIYRAELNWLADQPSNDYPYLSLELRNKVNLTNSTTSDNGFPRVSPDGTK 536 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQW 442 ++F+ +DG+ S++Y ++ +G N+T L N+ A P W Sbjct: 537 IVFTSNRDGN--SEVYLMNADGTNQTRLTNSSAEDGAPSW 574 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 48/82 (58%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PR S +G + + + +D ++Y ++ RLTN+ + + S+ D ++I F+S+R Sbjct: 528 PRVSPDGTKIVFTSNRDGNSEVYLMNADGTNQTRLTNSSAEDGAPSWKLDGTKIAFDSNR 587 Query: 323 EGKEQLYVMQSNGSDQKRISQD 344 +G +YVM ++G+ Q +++ + Sbjct: 588 DGNWNVYVMNTDGTGQAQLTNN 609 >gi|225459633|ref|XP_002285876.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 707 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 32/212 (15%) Query: 217 PRFSPNQQKVAYATYDD-----------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 P FSP ++AY + ++ T D KR G + P F Sbjct: 408 PSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDH--KRKGVVYTSA-GPTF 464 Query: 266 SSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++ + ++S+ D D+ + ++LT N S SPD I F S R G Sbjct: 465 ATESTKVDIVSINVD--------DVDQPSYKKLTTGGENNAFPSPSPDGKWIAFRSGRSG 516 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFT----KFSGEKFAIGVMKK 378 + LY+M + ++ I + E + D + WSP GD I F G F + V+ Sbjct: 517 YKNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHP 576 Query: 379 DGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 +G+ R +V + P +SP G+S++F+ Sbjct: 577 NGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFT 608 >gi|312083738|ref|XP_003143987.1| hypothetical protein LOAG_08407 [Loa loa] gi|307760846|gb|EFO20080.1| hypothetical protein LOAG_08407 [Loa loa] Length = 587 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 28/171 (16%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ V+ RLT+T+ + + SPD +IVF S R G ++++M S+G++ K+++ Sbjct: 153 DIFKVNEFGTVISRLTDTVGYDAEGAVSPDGRKIVFTSLRSGDPEIWIMNSDGTEPKQLT 212 Query: 343 QDKEASYFDPVWSPQG--------------------DLIAFTKFSGEKFAIGVMKKDGSQ 382 D+ P +SP G DL+++ S + + M DGS Sbjct: 213 -DELGYDGGPFFSPDGSKIVFRASRPNTSEEIQTYKDLLSYNLVSPLEMELYTMNIDGSG 271 Query: 383 ERLLVE--DSNLQAPTWSPSGRSLIFS---RKKDGDTGS-KLYSIDLNGRN 427 R + SN AP + P R +IFS + G G+ LY ID G N Sbjct: 272 LRKVTSLGGSNW-APFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEAGGN 321 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 33/216 (15%) Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + + DI +V T I R +G ++P +G++ + + + +I+ ++ Sbjct: 149 FPEYDIFKVNEFGTVISRLTDTVGYDAEGAVSP----DGRKIVFTSLRSGDPEIWIMNSD 204 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKE--------------------QLYV 330 ++LT+ L + +SPD S+IVF + R +LY Sbjct: 205 GTEPKQLTDELGYDGGPFFSPDGSKIVFRASRPNTSEEIQTYKDLLSYNLVSPLEMELYT 264 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----KFSGEKFAIGVMKKD---GSQE 383 M +GS ++++ S + P + P I F+ + G A + D G+ E Sbjct: 265 MNIDGSGLRKVTS-LGGSNWAPFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEAGGNVE 323 Query: 384 RLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 R+ + A P + +G+ ++ ++G + S+L Sbjct: 324 RVTFNEGGFDAFPMFDRTGQRFVWGSSRNGRSRSEL 359 >gi|222086206|ref|YP_002544738.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium radiobacter K84] gi|221723654|gb|ACM26810.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium radiobacter K84] Length = 275 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GKR ++ DIY++ + RLT++ N YS D I F S R G Sbjct: 117 WSPDGKRFSYCGIRNNVFDIYTISVDGGEETRLTHSEGRNDGPDYSADGQWIYFNSSRTG 176 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVM 376 Q++ + +G+ ++++ D ++F SP+ D + + + F + +M Sbjct: 177 LMQIWRIHPDGTGLQQVTSDNYGNWFAHP-SPRNDKVLLISYDPDVFDHPRDLNVRMRLM 235 Query: 377 KKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 DG L E ++ P WSP G + R Sbjct: 236 DMDGGNLTTLFELFGGQGSINVPNWSPDGDEFAYVR 271 >gi|225459635|ref|XP_002285877.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 680 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 32/212 (15%) Query: 217 PRFSPNQQKVAYATYDD-----------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 P FSP ++AY + ++ T D KR G + P F Sbjct: 381 PSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDH--KRKGVVYTSA-GPTF 437 Query: 266 SSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++ + ++S+ D D+ + ++LT N S SPD I F S R G Sbjct: 438 ATESTKVDIVSINVD--------DVDQPSYKKLTTGGENNAFPSPSPDGKWIAFRSGRSG 489 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFT----KFSGEKFAIGVMKK 378 + LY+M + ++ I + E + D + WSP GD I F G F + V+ Sbjct: 490 YKNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHP 549 Query: 379 DGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 +G+ R +V + P +SP G+S++F+ Sbjct: 550 NGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFT 581 >gi|71277933|ref|YP_269288.1| amidohydrolase family protein [Colwellia psychrerythraea 34H] gi|71143673|gb|AAZ24146.1| amidohydrolase family protein [Colwellia psychrerythraea 34H] Length = 1071 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ L + + +SPD I F SD +G + L++M+++GS+ K ++ Sbjct: 66 DIYTMPASGGEATPLMTDIAWQMQPRFSPDGKYIAFTSDEDGGDNLWIMKADGSEAKAVT 125 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----VMKKDGSQERLLV----EDSNLQ 393 + P WSP G+ I K ++G + K G +L E +L Sbjct: 126 TETFRLLNSPAWSPDGNYIVGRKHYTGTRSLGAGEVWMYHKSGGNGVMLTKRPNEQKDLG 185 Query: 394 APTWSPSGRSLIFSR 408 P +S G+ + FS+ Sbjct: 186 EPAFSHDGKYVYFSQ 200 >gi|114045524|ref|YP_736074.1| amidohydrolase [Shewanella sp. MR-7] gi|113886966|gb|ABI41017.1| amidohydrolase [Shewanella sp. MR-7] Length = 1062 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY + + + L + + YSPD I F SD +G + +++M +NGS+ + ++ Sbjct: 73 NIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDADGGDNIWIMDANGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSN--- 391 + P WSP + K +GE + V +G + L E N Sbjct: 133 TETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDEK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 14/142 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 A SPD S++ FE+ GK L + S + D E Y P WS G I FT Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKTLPDGKMSRLTELGNDIEELY--PQWSRDGKNIVFTT 424 Query: 366 FSGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------ 417 ++ + + + V+ K G ++L E PT+SP +++ + + G + Sbjct: 425 WNDQDQGTVQVISAKGGKAKQLTTEPGKYVEPTFSPDSELVVYRKTQGGHLTPRTWSQEP 484 Query: 418 -LYSIDLNGRNETLINTPAYAS 438 LY +DL + I Y + Sbjct: 485 GLYKVDLKTKQNKKITAEGYQA 506 >gi|295133107|ref|YP_003583783.1| peptidase [Zunongwangia profunda SM-A87] gi|294981122|gb|ADF51587.1| putative exported peptidase [Zunongwangia profunda SM-A87] Length = 1078 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 20/186 (10%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++L D D + K+I NF P FS++G + +KD ++Y +L S + E+LT Sbjct: 200 IWLYDLEND-SYKQISNFEGEDREPVFSADGTKVFYLNEKDGTQNLYVKNLSSGSEEKLT 258 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV----- 353 N + DS ++ F K ++Y M +K + + + F+ + Sbjct: 259 NFKDFPVRHLSISDSDKLAF----TWKGEVYTMTPGTQPKKLEIKVLDDAAFEAIKNMDI 314 Query: 354 -------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 SP IAF GE F GV D +R+ + + +WSPSG+ LIF Sbjct: 315 NSVTEFAVSPNNKEIAFVN-RGEVFVTGV--DDSRTKRITNTSTQERMVSWSPSGKELIF 371 Query: 407 SRKKDG 412 S +KDG Sbjct: 372 SGEKDG 377 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 29/213 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SPN +++A+ + ++ + D+R KRI N + +S +GK + S +KD Sbjct: 323 SPNNKEIAFV--NRGEVFVTGVDDSRT----KRITNTSTQERMVSWSPSGKELIFSGEKD 376 Query: 280 EAMDIYSVDLQSNATER-----------LTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y L E L NT A SPDSS+I F +R L Sbjct: 377 GSWNVYKATLNRPQEEYFYASTIVDIEPLINTTAEEFQAKISPDSSKIAFIEER---NIL 433 Query: 329 YVMQ-SNGSDQKRISQDKEASYFDP----VWSPQGDLIAFTKFSGEKF--AIGVMKKDGS 381 VM +G + + + SY D WSP + G F + ++K +G+ Sbjct: 434 KVMDLKSGKKTVILPEGRNHSYSDGDWSFQWSPDSRWLMVDDQKGYFFNNNVALIKANGN 493 Query: 382 QERLLVEDSNLQAPT--WSPSGRSLIFSRKKDG 412 E +S W+ G+ + ++ ++G Sbjct: 494 GEIFHPVNSGFGESNAKWAMDGKMMTYTSSREG 526 >gi|113968357|ref|YP_732150.1| amidohydrolase [Shewanella sp. MR-4] gi|113883041|gb|ABI37093.1| amidohydrolase [Shewanella sp. MR-4] Length = 1062 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++GS+ + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDADGGDNIWIMDADGSNPRTVT 132 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSN--- 391 + P WSP + K +GE + V +G + L E N Sbjct: 133 TETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDEK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 A SPD S++ FE+ GK L + S + D E Y P WS G I FT Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKTLPDGKMSRLTELGNDIEELY--PQWSRDGKNIVFTT 424 Query: 366 FSGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------ 417 ++ + + + V+ K G ++L E PT+SP+G +++ + + G + Sbjct: 425 WNDQDQGTVQVISAKGGKAKQLSTEPGKYVEPTFSPNGELVVYRKTQGGHLTPRTWSQEP 484 Query: 418 -LYSIDLNGRNETLINTPAYAS 438 LY +DL + I Y + Sbjct: 485 GLYKVDLKTKQNKKITAEGYQA 506 >gi|308047731|ref|YP_003911297.1| amidohydrolase [Ferrimonas balearica DSM 9799] gi|307629921|gb|ADN74223.1| amidohydrolase [Ferrimonas balearica DSM 9799] Length = 1064 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + L + ++ +SPD ++I F SD++G + ++ ++ +GSD + ++ Sbjct: 71 DIYTMPIGGGDATPLVKGIAWHMQPRFSPDGTRIAFTSDQDGGDNIWTVKLDGSDMQPVT 130 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-----VMKKDGSQERLLVEDSN----LQ 393 ++ P WSP G + K + ++G + G + L E N L Sbjct: 131 KETFRLLNSPAWSPDGQYLVGRKHYTAQRSLGAGEVWMYHISGGKGIQLTERPNDQKDLG 190 Query: 394 APTWSPSGRSLIFSR 408 P +SP GR + FS+ Sbjct: 191 EPAFSPDGRYIYFSQ 205 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 24/185 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + PRFS +G R + +D +I++V L + + +T F + S ++SPD +V Sbjct: 93 MQPRFSPDGTRIAFTSDQDGGDNIWTVKLDGSDMQPVTKETFRLLNSPAWSPDGQYLVGR 152 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFS--GEK 370 + + R G ++++ +G ++++ + + +P +SP G I F++ + G+ Sbjct: 153 KHYTAQRSLGAGEVWMYHISGGKGIQLTERPNDQKDLGEPAFSPDGRYIYFSQDATPGKT 212 Query: 371 FAI------GVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K + G E LL PT SP GR L + +DG S L Sbjct: 213 FHYSKDSVKGIYKIQRYDRQTGEIEVLLEGSGGAIRPTPSPDGRQLAYI-ARDGFQ-SAL 270 Query: 419 YSIDL 423 Y DL Sbjct: 271 YLYDL 275 >gi|77359984|ref|YP_339559.1| protease [Pseudoalteromonas haloplanktis TAC125] gi|76874895|emb|CAI86116.1| putative protease [Pseudoalteromonas haloplanktis TAC125] Length = 1080 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 95/192 (49%), Gaps = 19/192 (9%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREG 324 S +GKR L + + + ++SV +++ T L++T ISA++SP+ I + SD G Sbjct: 327 SHDGKRVLFTARGE----LFSVPVKNGPTRNLSHTPKGREISATWSPNGRYIAYMSDETG 382 Query: 325 KEQLYVM-QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + ++Y+ ++N + K+++ + F+PVWSP + F+ + + + + K G Q Sbjct: 383 EYEIYLKDRANNNQVKQLTSNGSIWRFEPVWSPDNKKLLFSDQNHTLWWLDI--KTGKQR 440 Query: 384 RLLVEDSN---LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-------NT 433 ++ N L + WSP+ ++F + + S L+ +L + T + Sbjct: 441 KIDTAKYNEDGLTSYIWSPNSEDIVFVKNNENRYAS-LWHYNLKDKRVTRLTDDMSSETN 499 Query: 434 PAYASDPQWVGF 445 PA++ D Q + F Sbjct: 500 PAFSPDGQQLYF 511 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 30/189 (15%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DIY + ++ + RLT+ + +SPD SQI F + G Q+YVM +GSD K+ Sbjct: 48 AGDIYIANTKTGKSTRLTDHIGFETFPKFSPDGSQIAFSAQYNGSRQVYVMNRDGSDLKQ 107 Query: 341 ISQDKEASYFDPV---------WSPQGDLIAF----TKFS---GEKFAIGVMKKDGSQER 384 ++ + P W+P G I F T + G + V G ++ Sbjct: 108 LTYYNDVGVMPPRGGFDYRVLDWTPDGKHIVFRANRTPYGQRVGRPYI--VPAAGGLEQP 165 Query: 385 LLVEDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSKLYSIDL-NGRNETLINTP 434 L + ++ SP G+ +++ ++ G ++ DL N +++ L Sbjct: 166 LAIPETG--GGMLSPDGKQYVYTPIDREFRTWKRTRGGRAQDVWVYDLENNKSKQLTTNR 223 Query: 435 AYASDPQWV 443 A P WV Sbjct: 224 ATDQQPTWV 232 >gi|116619169|ref|YP_821325.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222331|gb|ABJ81040.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 877 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 23/205 (11%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +P+R+G + + LA + ++ A ++ LT + Sbjct: 291 EESPRRLGWYWTAALAVGLAIGAAGGWWWARRGVAASMW------GPVRPLTTYSGLEYE 344 Query: 307 ASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + SPD Q+ F D +GK+ +YV +G R++ D A + P WSP G +AF Sbjct: 345 PALSPDGKQVAFAWDGDGKDNFNIYVRLVDGGAPLRLTTDAAADH-SPSWSPDGSQVAFL 403 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE---DSNLQAPT------WSPSGRSLIFSRKKDGDTG 415 + + A+ ++ G ER LV+ S PT WSP GR L FS +D + Sbjct: 404 R----QNAVFLVPSLGGVERRLVQFPRGSIYGNPTARSSISWSPDGRFLAFSGTEDDNPP 459 Query: 416 SKLYSIDLNGRNETLINTP-AYASD 439 S + +G +TP Y SD Sbjct: 460 SIWVASRESGEAHRFSSTPRGYLSD 484 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 10/182 (5%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQSNATER 296 L+ +D A +G ++ P S G+R + + M+ S D + ++ Sbjct: 559 LLRLTLDGAMHPLGIDNGIVRWPSLSRTGRRMAYEKRHIDTNIYRMEGPSADGGARPFDQ 618 Query: 297 LTNTLFINISA-----SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L ++ +A SPD ++VF SDR G ++YV ++G+DQ ++ + Sbjct: 619 LGVAAVVDSTALDREPMLSPDGRRMVFNSDRSGSYEIYVANADGTDQVALTAMGLTALGS 678 Query: 352 PVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 P WSP G + F ++ +G + G R+ E+ P++S G + F+ + Sbjct: 679 PRWSPDGQTVVFDRYENGHSMIYTINAGGGKPRRVTSEEFRDIRPSYSHDGAWIYFASNR 738 Query: 411 DG 412 G Sbjct: 739 SG 740 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 90/191 (47%), Gaps = 10/191 (5%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 EP SP+ +++ + + D +Y+ + + + +PR+S +G+ + Sbjct: 633 EPMLSPDGRRMVFNS-DRSGSYEIYVANADGTDQVALTAMGLTALGSPRWSPDGQTVVFD 691 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 ++ IY+++ R+T+ F +I SYS D + I F S+R G+ +++ + G Sbjct: 692 RYENGHSMIYTINAGGGKPRRVTSEEFRDIRPSYSHDGAWIYFASNRSGRLEIWKVPPGG 751 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 ++I+ + F+ SP G L+ + G + M +G + L++ ++ + Sbjct: 752 GKPQQITHNFGTEPFE---SPDGRLLYYMNDQG----LWSMPVEGGEPTLVLPEAVMY-- 802 Query: 396 TWSPSGRSLIF 406 ++ +GRS+ + Sbjct: 803 RYALAGRSIYY 813 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 31/238 (13%) Query: 215 FEPRFSPNQQKVAYA-TYDDEDILRVY--LMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +EP SP+ ++VA+A D +D +Y L+D AP R+ + +P +S +G + Sbjct: 343 YEPALSPDGKQVAFAWDGDGKDNFNIYVRLVD---GGAPLRLTTDAAADHSPSWSPDGSQ 399 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLT----NTLFINISA----SYSPDSSQIVFE-SDR 322 Q ++ V RL +++ N +A S+SPD + F ++ Sbjct: 400 VAFLRQNA----VFLVPSLGGVERRLVQFPRGSIYGNPTARSSISWSPDGRFLAFSGTED 455 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKD- 379 + ++V + R S D P +SP G IA+ + + + F+ V+ ++ Sbjct: 456 DNPPSIWVASRESGEAHRFSSTPRGYLSDSSPAFSPDGHTIAYVR-ARDTFSRAVVLQEI 514 Query: 380 -------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 G + D +Q W P GR LI S ++ G+ + L + L+G L Sbjct: 515 HAGGTPQGKEREATSYDKTIQELAWQPDGRGLILSVRQGGEH-AALLRLTLDGAMHPL 571 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 27/252 (10%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP----KRIGNFRSMILAPRFSSNGKRA 272 P FSP+ +AY D V L + P + ++ I + +G+ Sbjct: 487 PAFSPDGHTIAYVRARDTFSRAVVLQEIHAGGTPQGKEREATSYDKTIQELAWQPDGRGL 546 Query: 273 LISV-QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++SV Q E + + L A L I S S ++ +E R +Y M Sbjct: 547 ILSVRQGGEHAALLRLTLD-GAMHPLGIDNGIVRWPSLSRTGRRMAYEK-RHIDTNIYRM 604 Query: 332 QSNGSD-------QKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +D Q ++ +++ D P+ SP G + F + I V DG+ Sbjct: 605 EGPSADGGARPFDQLGVAAVVDSTALDREPMLSPDGRRMVFNSDRSGSYEIYVANADGTD 664 Query: 383 ERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT------- 433 + L + L +P WSP G++++F R ++G S +Y+I+ G + + Sbjct: 665 QVALTAMGLTALGSPRWSPDGQTVVFDRYENGH--SMIYTINAGGGKPRRVTSEEFRDIR 722 Query: 434 PAYASDPQWVGF 445 P+Y+ D W+ F Sbjct: 723 PSYSHDGAWIYF 734 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 9/148 (6%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNT---LFINISASYSPDSSQIVFESDREGKEQL 328 A + D I+ +S R ++T + S ++SPD I + R+ + Sbjct: 449 AFSGTEDDNPPSIWVASRESGEAHRFSSTPRGYLSDSSPAFSPDGHTIAYVRARDTFSRA 508 Query: 329 YVMQSNGSDQKRISQDKEASYFDP-----VWSPQG-DLIAFTKFSGEKFAIGVMKKDGSQ 382 V+Q + +++EA+ +D W P G LI + GE A+ + DG+ Sbjct: 509 VVLQEIHAGGTPQGKEREATSYDKTIQELAWQPDGRGLILSVRQGGEHAALLRLTLDGAM 568 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 L +++ ++ P+ S +GR + + ++ Sbjct: 569 HPLGIDNGIVRWPSLSRTGRRMAYEKRH 596 >gi|226349776|ref|YP_002776890.1| hypothetical protein ROP_pROB01-05390 [Rhodococcus opacus B4] gi|226245691|dbj|BAH56038.1| hypothetical protein [Rhodococcus opacus B4] Length = 309 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD S I F S +G + +M ++GSD + I+ + S +SP G + FT Sbjct: 125 FSPDGSSIAF-SKSDGS--ISIMNTDGSDLRVIAPAESGSVA--TFSPDGSRVVFTA--- 176 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + V G + LL + P +SP G +L+FS + G+ GS++YS+ G Sbjct: 177 DGYIVEVPTTGGESKVLLRDQFWNSDPAYSPDGSTLVFSSNRGGNHGSEIYSMPAGGGEI 236 Query: 429 TLINTPAYASDPQWV 443 T + T YA PQ+ Sbjct: 237 TRL-TDTYAVHPQFT 250 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 34/200 (17%) Query: 215 FEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 ++P FSP+ +A++ D I+ D R+ AP G+ + FS +G R + Sbjct: 121 YQPVFSPDGSSIAFSKSDGSISIMNTDGSDLRV-IAPAESGSVAT------FSPDGSRVV 173 Query: 274 ISVQKDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQIVFESDREGKE--QLY 329 + D Y V++ + E L F N +YSPD S +VF S+R G ++Y Sbjct: 174 FTA------DGYIVEVPTTGGESKVLLRDQFWNSDPAYSPDGSTLVFSSNRGGNHGSEIY 227 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---SGE---------KFAIGVMK 377 M + G + R++ D A + P ++P G I +T+ SGE + M Sbjct: 228 SMPAGGGEITRLT-DTYAVH--PQFTPDGSRILYTRATTQSGELVVDISTSNSAELASMN 284 Query: 378 KDGS-QERLLVEDSNLQAPT 396 DGS Q+RL Q P+ Sbjct: 285 PDGSDQKRLTPRSITAQYPS 304 >gi|108803163|ref|YP_643100.1| peptidase S9, prolyl oligopeptidase active site region [Rubrobacter xylanophilus DSM 9941] gi|108764406|gb|ABG03288.1| peptidase S9, prolyl oligopeptidase active site region [Rubrobacter xylanophilus DSM 9941] Length = 588 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 11/175 (6%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G+R + V + E+LT A YSP + ++V+ D G Sbjct: 19 WSPDGRRVTFITSITGVPQAWEVAAEGGWPEQLTFHEERVAQAEYSPAAERLVYSMDAGG 78 Query: 325 KE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDG 380 E QL+V+ ++ ++ +A + +SP G IA+T + +G F + V DG Sbjct: 79 NERMQLFVLDRRTGVERDLTGRPDAIHHFGAFSPDGGRIAYTATRRNGTDFDVYVQSLDG 138 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRNETLIN 432 E + WSP G SL+ SR + DGD L+ +DL TL+ Sbjct: 139 EPEPVWEVSGYHAVACWSPDGSSLVVSRHRSNMDGD----LFLLDLESGEATLLT 189 >gi|197104557|ref|YP_002129934.1| putative transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196477977|gb|ACG77505.1| putative transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 697 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++ +DTR P+RI + R S + +R ++V+ ++ A +T Sbjct: 392 LWTVDTRRPGEPRRISLGFGQLTFSRMSID-RRNRLAVELPRGRTNIALVGPDGAVTPVT 450 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N + + D + + + S+R G +L++ G+ R++ + P WSP G Sbjct: 451 NAAGADWEPEGAADGA-VAYVSNRSGSSELWI-SPPGTQPVRLTNIVGSYVHSPAWSPDG 508 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSK 417 +AF G K I + +DGS+ R + +D + T WSP GRSL + ++ TG++ Sbjct: 509 RSLAFVAVKGRKAEIYTVARDGSRLRAVTDDGTDKLETAWSPDGRSLRYLQR----TGAR 564 Query: 418 LYSIDL 423 ++L Sbjct: 565 YRVMEL 570 >gi|226226442|ref|YP_002760548.1| hypothetical protein GAU_1036 [Gemmatimonas aurantiaca T-27] gi|226089633|dbj|BAH38078.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 1168 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 26/183 (14%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 R Y +DTR G + S+ ++P +GK+ + D D+Y++ R+ Sbjct: 76 RSYALDTRE-------GTWLSVDISP----DGKQIVF----DMLGDLYTMPFAGGEATRI 120 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN L + +SPD +VF SDR+G + ++ + ++ K I++ + Y P +SP Sbjct: 121 TNGLAFDAQPRFSPDGKSVVFISDRQGADNVHTIDLATNEIKEITRGRTNVYLSPEYSPD 180 Query: 358 GDLIAFTK--FSGEKFAIGVMK-KDGSQERLLVEDSNLQAPT--------WSPSGRSLIF 406 G I +K F G + + + GS L +N T +SP GR L + Sbjct: 181 GQYIVASKGSFRGALPTLWMYHVRGGSGVSLYTAPANAAPGTAVQQAGASFSPDGRYLWY 240 Query: 407 SRK 409 +++ Sbjct: 241 TQR 243 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS 367 SPD Q+ F S ++LYVM +R+S D EA +P WSP G +A+ ++ Sbjct: 403 SPDGKQLAFIS----LDKLYVMDWPSGTPRRVSTLNDIEA---EPAWSPDGRSLAWVTWA 455 Query: 368 --GEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSG-RSLIFS------RKKDGDTGS 416 G + M + L V S + P WSP+G R L+ R + G TG+ Sbjct: 456 NNGGRLYKSAMVAGRATRVLPVSASTGTFRQPVWSPNGARILVLQSGAQGRRDQTGVTGT 515 Query: 417 KLY------SIDLNGRNETLINTPAYASDPQ 441 S NG TLI A S P Sbjct: 516 TQLMWFAANSTSTNGDAGTLIARAAGRSKPH 546 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 31/192 (16%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYS 310 RI N + PRFS +GK + + A +++++DL +N + +T + +S YS Sbjct: 119 RITNGLAFDAQPRFSPDGKSVVFISDRQGADNVHTIDLATNEIKEITRGRTNVYLSPEYS 178 Query: 311 PDSSQIVFESD--------------REGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWS 355 PD IV R G LY +N + + Q AS+ S Sbjct: 179 PDGQYIVASKGSFRGALPTLWMYHVRGGSGVSLYTAPANAAPGTAV-QQAGASF-----S 232 Query: 356 PQGDLIAFTKFSG--------EKFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIF 406 P G + +T+ +G ++ + ++ G +E + PT SP G+ +++ Sbjct: 233 PDGRYLWYTQRTGAWHYNAQFPQYQVWTYDRETGEREIQSTRYGSAVRPTVSPDGKWMVY 292 Query: 407 SRKKDGDTGSKL 418 + + TG ++ Sbjct: 293 GSRYENKTGLRI 304 >gi|255535417|ref|YP_003095788.1| WD40-like beta Propeller [Flavobacteriaceae bacterium 3519-10] gi|255341613|gb|ACU07726.1| WD40-like beta Propeller [Flavobacteriaceae bacterium 3519-10] Length = 741 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 112/284 (39%), Gaps = 59/284 (20%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE---DILRVYLMD-TRIDRAP---KRIG 254 NIR LT D E FSP+ +K+ + E ++YL+D T+ D + K I Sbjct: 28 NIRKLTFGGDNA--EAYFSPDSKKLTLQVTNPEIGAQCDQIYLLDLTKKDTSVGDLKLIS 85 Query: 255 NFRSMILAPRFSSNGKRALISVQKD----------------------EAMDIYSVDLQSN 292 F +GK L + + E DIY DL Sbjct: 86 TGDGRTTCSFFMPDGKHILYASTHEASKACPEKPKPRTDGKYLWPVYEEFDIYIADLNGK 145 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----------- 341 T +LT++ + A SPD IVF S R G +L+ M +G + K++ Sbjct: 146 ITRKLTDSPGYDAEAVVSPDGKYIVFTSMRSGDLELWRMDIDGKNLKQLTTGLGYDGGAF 205 Query: 342 -SQDKEASYFDPVW-SPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVEDSNLQ 393 S D + F + + ++ + + GE I M DGS L + +NL Sbjct: 206 FSHDSKKLVFRSSRPTSEKEVKEYRELLGENLVAPTNMEIYTMNVDGSD---LKQVTNLG 262 Query: 394 APTWS----PSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLI 431 WS PS R ++FS G ++YSID +GRN T I Sbjct: 263 KANWSPYFHPSDRKIVFSSNHHSTRGYDFQIYSIDTDGRNLTQI 306 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 26/170 (15%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK + + + ++++ +D+ ++LT L + A +S DS ++VF S R Sbjct: 163 SPDGKYIVFTSMRSGDLELWRMDIDGKNLKQLTTGLGYDGGAFFSHDSKKLVFRSSRPTS 222 Query: 326 E--------------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 E ++Y M +GSD K+++ +A++ P + P I F+ Sbjct: 223 EKEVKEYRELLGENLVAPTNMEIYTMNVDGSDLKQVTNLGKANW-SPYFHPSDRKIVFSS 281 Query: 366 FS----GEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 G F I + DG + +S A P +SP G+ L+FS + Sbjct: 282 NHHSTRGYDFQIYSIDTDGRNLTQITYESEFNAFPMFSPDGKQLVFSSNR 331 >gi|91791380|ref|YP_561031.1| amidohydrolase [Shewanella denitrificans OS217] gi|91713382|gb|ABE53308.1| amidohydrolase [Shewanella denitrificans OS217] Length = 1065 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + ++VM ++GS+ ++ Sbjct: 75 DIYQMPISGGDAKPLAKGIAWQMQPVYSPDGKYIAFTSDEDGGDNIWVMNADGSNPHPVT 134 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 ++ P WSP L+A F+ GE + V +G + L E N Sbjct: 135 KETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDQK 191 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 192 DLGEPAYSPDGRYIYFSQ 209 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 14/142 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTK 365 A SPD ++VFE+ GK L++ Q+R+++ D + + P WS G I FT Sbjct: 371 AQVSPDGKKVVFEA--LGK--LWIRDIENDTQERLTRLDDDINELFPQWSRDGKQIVFTT 426 Query: 366 FSGEKFAIG--VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------ 417 ++ + + + G RL E PT++P+G+ +++ + G+ + Sbjct: 427 WNDQDQGTVSLISARGGKATRLTSEPGKYVEPTFAPNGQFVVYRKANGGNITPRTWSQET 486 Query: 418 -LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ T I Y + Sbjct: 487 GLYKVDVKGKQNTKITAEGYQA 508 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 51/278 (18%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT-----RIDRAPKRIGNFRSMI-- 260 P+ + L EP +SP+ + + ++ D Y D+ +I R + G+ ++ Sbjct: 187 PNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVSGIYKIKRYDTQTGDIEILVEG 246 Query: 261 ----LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTL-----------FIN 304 + P S +GK+ L +++D +Y +DLQS T +L L + Sbjct: 247 TGGAIRPTPSPDGKK-LAYIKRDGFQSSLYLLDLQSGETNKLYAELDRDMQETWAIHGVY 305 Query: 305 ISASYSPDSSQIVFESDREGK-EQLYVMQSNGSD-------------QKRISQDKEASYF 350 S +++ D+S IVF + +GK +L + + SD R +Q+ + F Sbjct: 306 PSMAWTQDNSSIVFWA--KGKINKLKLKDLSVSDIPFKVKAQLDIQPSVRFTQNLDQDKF 363 Query: 351 D------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL--LVEDSNLQAPTWSPSGR 402 D SP G + F K I ++ D +QERL L +D N P WS G+ Sbjct: 364 DVKMLRMAQVSPDGKKVVFEALG--KLWIRDIEND-TQERLTRLDDDINELFPQWSRDGK 420 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 ++F+ D D G+ G+ L + P +P Sbjct: 421 QIVFTTWNDQDQGTVSLISARGGKATRLTSEPGKYVEP 458 >gi|120434675|ref|YP_860364.1| WD-40-like repeat-containing amidohydrolase [Gramella forsetii KT0803] gi|117576825|emb|CAL65294.1| WD40-like repeat containing amidohydrolase family protein [Gramella forsetii KT0803] Length = 1102 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 37/218 (16%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISA 307 NF++M L +S G + V D DIY + + L + + Sbjct: 45 NFKTMTLN---ASEGTWMNLDVSPDGKTIVFDLLGDIYKMPISGGKASILRTGIPYEVQP 101 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKF 366 +SPD S+I F SD G + +++M NG + K+I+++K + VW+P G+ +IA F Sbjct: 102 RFSPDGSKISFTSDAGGGDNIWIMDVNGKNAKQITEEKFRLLNNAVWTPDGNSVIARKHF 161 Query: 367 S-------GEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSR------- 408 + GE + + K+G Q L E N Q P+ + G+ L +S Sbjct: 162 TSGRSLGAGEMWQYHIAAKEGLQ---LTERKNDQQDVNEPSITSDGKYLFYSEDMYPGGN 218 Query: 409 -KKDGDTGSKLYSIDL----NGRNETLINTPAYASDPQ 441 + + D ++Y I G T+ P A+ P+ Sbjct: 219 FQYNKDPNKQIYVIKRYNFETGETITVTGGPGGAARPE 256 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 23/181 (12%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRIS 342 ++ L + +R+TN+ S+SPD + I++ + D + + + +GS K I+ Sbjct: 390 LWKKSLPNGKPQRITNSEDFEFEPSFSPDGNHIIYVTWDDQNLGTIKRVSLSGSASKTIT 449 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQERLLVEDSNLQ 393 +K Y +P +S G +I F+K SG ++ I M G + LV++ Sbjct: 450 SEK-GIYRNPSYSNDGKMIVFSKESGNSDLGQTFTKEPGIYTMNASGDNVKKLVKEGIF- 507 Query: 394 APTWSPSGRSLIFSRKKD--GDTGSKLYSIDLNGRNE-TLINTPAYAS------DPQWVG 444 P ++ + F G+ L S+DLNG++E T IN+ YA+ D +W+ Sbjct: 508 -PIFNVDDSRIFFQTGGYFFGNITKSLKSVDLNGKDERTHINS-KYANRILPSPDNKWIL 565 Query: 445 F 445 F Sbjct: 566 F 566 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 25/168 (14%) Query: 215 FEPRFSPNQQKVAYATYDDED---ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 FEP FSP+ + Y T+DD++ I RV L + A K I + + + P +S++GK Sbjct: 411 FEPSFSPDGNHIIYVTWDDQNLGTIKRVSLSGS----ASKTITSEKGIYRNPSYSNDGKM 466 Query: 272 ALISVQKDEA---------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD- 321 + S + + IY+++ + ++L I ++ D S+I F++ Sbjct: 467 IVFSKESGNSDLGQTFTKEPGIYTMNASGDNVKKLVKEGIFPI---FNVDDSRIFFQTGG 523 Query: 322 ---REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + L + NG D++ K A+ P SP I F+ Sbjct: 524 YFFGNITKSLKSVDLNGKDERTHINSKYANRILP--SPDNKWILFSNL 569 >gi|73670800|ref|YP_306815.1| hypothetical protein Mbar_A3362 [Methanosarcina barkeri str. Fusaro] gi|72397962|gb|AAZ72235.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 574 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 33/148 (22%) Query: 308 SYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFD------------PV 353 S SPD +I+F S +G Q Y+ ++GS+ K SY+D Sbjct: 254 SLSPDRKKIIFASGLQGSFDSQTYISNTDGSNLK-----GNISYYDGDNPEDTNLLTKEY 308 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 W P G L+ + + +++ D + +RLL E N P W P G+ ++F K+ Sbjct: 309 WQPNGSLL----LVNQNRNLYIVEGDENNKRLLYE-GNASEPQWFPDGKKILFVENKN-- 361 Query: 414 TGSKLYSIDLNGRNETLIN----TPAYA 437 KLYSID++G N + I TPA++ Sbjct: 362 ---KLYSIDIDGTNLSFITNFGPTPAHS 386 >gi|297620364|ref|YP_003708501.1| putative protein TolB [Waddlia chondrophila WSU 86-1044] gi|297375665|gb|ADI37495.1| putative protein TolB [Waddlia chondrophila WSU 86-1044] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 44/301 (14%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 RKI H I+D I++++ G G ++R+L+ +V + + D DGAN LT + Sbjct: 129 RKIIHRIADAIHRALFGADGIASTRLLYTVRTVEEKTEYSEIWQSDYDGANAMQLTSRQA 188 Query: 212 QILFEPRFSPN-----QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 P + P+ + Y +Y I +VY I + IG R M+ S Sbjct: 189 GYCITPGYVPHLPGKQAESFFYVSYKT-GIPKVY-----IASLGEPIG--RKMLT---LS 237 Query: 267 SNGKRALISVQKDEAMDIYSVD------LQSNATER---------LTNTLFINISASYSP 311 N I+ Q+D I V +Q + E+ + S ++SP Sbjct: 238 GNQLMPAINRQRDRIAFISDVTGNPDLFIQEFSPEKGGIGKPRHLFSARYATQGSPTFSP 297 Query: 312 DSSQIVFESDREGKEQLYVMQ--SNGSDQKRISQ------DKEASYFDPVWSPQGDLIAF 363 D ++ F S++ G ++Y+M G+ K I ++E + P WSP G +A+ Sbjct: 298 DGFRLAFVSNKGGSPRVYLMNIPPQGTPLKEIEPILVTKVNRENT--APCWSPDGTKLAY 355 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I V ER L + N + P+W+ + ++++ G+ +LY I+ Sbjct: 356 CSKTKGVRQIWVYDLLTGVERQLTDGPRNKENPSWASNSLHIVYNTSDAGNC--ELYLIN 413 Query: 423 L 423 L Sbjct: 414 L 414 >gi|168704723|ref|ZP_02737000.1| putative exported protease [Gemmata obscuriglobus UQM 2246] Length = 1080 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 120/263 (45%), Gaps = 37/263 (14%) Query: 202 NIRYLTPSRDQILFEP-----RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR--IG 254 +I++ + S+DQ++FE +F P K T V +++ DRA R + Sbjct: 268 DIKFPSASKDQLVFENGGYIYKFDPKTAKAEKVT--------VRILE---DRAGARGALT 316 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDS 313 + + A S +GKRAL + + D +++V T LT T + + +SPD Sbjct: 317 DVSKSVTAFEVSPDGKRALFAARGD----VFTVPAGDGVTRNLTRTPGAHDRNPKWSPDG 372 Query: 314 SQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F SD G+++++V ++GS K ++ + ++ WSP I + +K Sbjct: 373 KSVAFVSDATGEDEIHVGPADGSAPAKPVTSAADTYKYEIQWSPDSKKIL---WGDKKLR 429 Query: 373 IGVMKKDGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + + + L+ + + TWSP + + F R ++ DT K+Y L T Sbjct: 430 LQFVDVETKKVTLVDQAKAWEVRDFTWSPDSKWVAFGR-QEVDTMPKVYLYSLETTKTTA 488 Query: 431 I-------NTPAYASDPQWVGFM 446 + NTP +++D +++ F+ Sbjct: 489 VTDGWYASNTPTFSADGKYLFFV 511 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 22/146 (15%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y+V R+T+ + +SPD S + F +G +++V+ + G + KR Sbjct: 44 AGDLYTVPAAGGTARRITSHPGFEMFPRFSPDGSLVAFTGQYDGNTEVFVVPAVGGEPKR 103 Query: 341 IS------QDKEASYFDP-----VWSPQGDLI-------AFTKFSGEKFAIGVMKKDGSQ 382 ++ +D+ + P W+P G + +F F G+ F + V + G Sbjct: 104 LTYTATLGRDEVSDRMGPNNVVIGWTPDGKSVLFRSRMRSFNDFVGQLFTVPV--EGGVP 161 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSR 408 E L + ++S G L ++R Sbjct: 162 EELPLPRGGFA--SYSADGTKLAYNR 185 >gi|309790683|ref|ZP_07685234.1| peptidase S41 [Oscillochloris trichoides DG6] gi|308227277|gb|EFO80954.1| peptidase S41 [Oscillochloris trichoides DG6] Length = 1083 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 17/194 (8%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 RF + L+ V +D D++SV ++ RLT + + SPD S + F E Sbjct: 7 RFPTIHNDTLVFVCED---DLWSVGVEGGVARRLTANPGEALRPALSPDGSWLAFTGRDE 63 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKKD 379 G ++YVM + G +R++ W P G I F+ + + FA + + Sbjct: 64 GVPEVYVMPAIGGPARRLTFLGAQRTQVVGWMPDGQTIIFSSEASQPFAGMSQLYAVPHQ 123 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETL 430 G + RLL + ++ P G ++I + R + G TG + G + L Sbjct: 124 GGEPRLLPTGPAVSM-SYGPHGAAVIARNVTDLARWKRYRGGRTGDLWVDPNGQGAWQRL 182 Query: 431 INTPAYASDPQWVG 444 I+ + P W+G Sbjct: 183 IHLDGNLAAPIWIG 196 >gi|171909807|ref|ZP_02925277.1| probable TolB protein [Verrucomicrobium spinosum DSM 4136] Length = 1009 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVM 331 + + K M+IY++++ +RLT T + +S D S+I + E + ++Y M Sbjct: 214 LKIDKQYFMEIYTMNVDGTDVKRLTTTPGYDGGPFFSHDGSKICWRRFNEKGDIAEIYTM 273 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSG-EKFAIGVMKKDGSQE--RLLV 387 ++GSDQK+I++ S+ P + P GD + FT +G F + + G E R+ Sbjct: 274 NADGSDQKQITKLGAMSWA-PYFHPSGDYLIFTNNVNGFANFELYAVDAAGKHEPVRITT 332 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 D P +SP G+ L ++ + S+++ D N Sbjct: 333 TDGFDGLPVFSPDGKKLSWTSGRTSGGASQIFLADWN 369 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 27/174 (15%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 D+ D++ L+ + +++T + + SPD ++VF S+R + Sbjct: 156 DQRYDLFLYSLKDKSLKQITREEGYDAEGAISPDGKRVVFASNRAAYSEPLSPADTERLK 215 Query: 328 --------LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS--GEKFAIGV 375 +Y M +G+D KR++ +D P +S G I + +F+ G+ I Sbjct: 216 IDKQYFMEIYTMNVDGTDVKRLTT---TPGYDGGPFFSHDGSKICWRRFNEKGDIAEIYT 272 Query: 376 MKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 M DGS ++ + + + AP + PSG LIF+ +G +LY++D G++E Sbjct: 273 MNADGSDQKQITKLGAMSWAPYFHPSGDYLIFTNNVNGFANFELYAVDAAGKHE 326 >gi|34556943|ref|NP_906758.1| translocation protein TolB [Wolinella succinogenes DSM 1740] gi|67461991|sp|Q7MA16|TOLB_WOLSU RecName: Full=Protein tolB; Flags: Precursor gi|34482658|emb|CAE09658.1| PUTATIVE TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Wolinella succinogenes] Length = 421 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 36/337 (10%) Query: 117 IKEGKDR--LRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDF 173 +K G++ + E RL+DV + K + + + +AH ++ DI I D+ Sbjct: 95 VKAGREGSGILAELRLYDVNSGDSVFAKSYTVAREDRYPFVAHKMAIDINNYIKAPSIDW 154 Query: 174 NSRILFVS--------ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +R + +S + VV+ V+ +DG R I P+++ QQ Sbjct: 155 MNRFVVLSKYTAPSESQIVVADYTLTFQNVIIKDG---------RLNIF--PKWANEQQD 203 Query: 226 VAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 Y T Y + L Y + T R +I M++A S++GK+ L+++ DI Sbjct: 204 AIYYTKYLTKPTLFRYNLYTGESR---KITESEGMLVASDVSADGKKLLLTMAPHTQSDI 260 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + D Q+ ++LT I++SA + D +I+F SDR G ++ +GS+ + Q Sbjct: 261 FLFDTQTGTRKQLTRYPGIDVSAHFIEDERRIMFISDRLGYPNVFATGLDGSET--VEQM 318 Query: 345 KEASYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 + S G I ++ +F F + ++ R L + Q P +S Sbjct: 319 VFHGRNNNAASAFGQYIVYSSRESSNEFDTNTFNLYLVSTKSDYIRRLTANGVNQMPRFS 378 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 G ++++ K S L I LN L P+ Sbjct: 379 QDGETVMY--LKHNGAQSALGVIRLNYNKSYLFPLPS 413 >gi|254480026|ref|ZP_05093274.1| Amidohydrolase family protein [marine gamma proteobacterium HTCC2148] gi|214039588|gb|EEB80247.1| Amidohydrolase family protein [marine gamma proteobacterium HTCC2148] Length = 1082 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIYS+ ++ +T + +I +SPD SQI F SDR+G + +++ D ++++ Sbjct: 73 DIYSLPIEGGKATAITQGMAWDIQPRFSPDGSQIAFISDRDGGDNVWLQDLGSGDSRQLT 132 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSNLQ- 393 + +P WSP G IA K +GE + V + + +V N Sbjct: 133 FESFRLLNNPSWSPDGQYIAARKHFTTSRSLGTGEIWLYHVDGNRSQKGQQIVARPNETF 192 Query: 394 -----APTWSPSGRSLIFSR 408 PT+S G S+ FSR Sbjct: 193 QKEQGEPTFSADGNSIYFSR 212 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 AS SPD S +VFES E LY+ S+ D KR++ DK + + PVWSP + F + Sbjct: 374 ASRSPDGSAVVFESLGE----LYIKHSD-KDAKRLTSDKNEGFDYSPVWSPDSKSLYFMR 428 Query: 366 FSGEKFAI--GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++ + V G +RL V + SP G L+F + L+++D Sbjct: 429 WNDQSLTSIRRVNANGGKSKRLTVPTGQYTELSVSPKGDQLLFRKIAASALLGSLHTVD 487 >gi|297845142|ref|XP_002890452.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata] gi|297336294|gb|EFH66711.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata] Length = 706 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 140/357 (39%), Gaps = 57/357 (15%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 L ++ Q++T P + F S + + G D VE L+D+K R + I Sbjct: 298 LTTESVTIQRVT-PPGVHAFTPATSPNNHEFIAVATRRPGSDYRHVE--LFDLK-RNEFI 353 Query: 141 GKKFFSSPASWRKIAHTISDDI---YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 +P S+ D Y S GE S +LF+ E++ + SL +D Sbjct: 354 ELTRLVAPKSYHLNPFLSPDSSRVGYHSCRGEANGRRSPLLFL-ENIQTTTTDLSLFRID 412 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--------DDEDILRVY---LMDTRI 246 P FSP ++AY D VY T Sbjct: 413 GS----------------FPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYNGMAFSTAW 456 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 D P R G S P F++ +IS++ D A +S++ RLT N Sbjct: 457 D--PVRPGVVYSSS-GPTFATERTEVDVISIEVDAAD-------KSSSVRRLTTNGKNNA 506 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAF 363 SPD +IVF S R G + LY+M + + + + E ++ D + WSP G+ IAF Sbjct: 507 FPWPSPDGKRIVFRSGRTGHKNLYIMDAEKGESGGLWRLTEGAWTDTMCNWSPDGEWIAF 566 Query: 364 -----TKFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDG 412 + SG F + ++ +G+ R L++ P +SP +SL+F+ G Sbjct: 567 ASDRESPGSG-SFELFLIHPNGTGLRKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAG 622 >gi|20090389|ref|NP_616464.1| TolB protein [Methanosarcina acetivorans C2A] gi|19915397|gb|AAM04944.1| TolB protein-like protein [Methanosarcina acetivorans C2A] Length = 577 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 23/239 (9%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + L ++DRDG ++ LT + D++ +S + +K+AY+T ED + Sbjct: 176 LNDQLYLIDRDGYVLQKLTDTSDRVE-TAIWSNDGKKIAYSTGQTEDEETGLWIINENGT 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA- 307 KR+ N +++ +S + R DE +YS+ + +L+ F Sbjct: 235 ENKRLDN--GIVIG--WSPDDSRIY---YVDENFSLYSIKVDGTDRFQLSTKSFSRNEDV 287 Query: 308 -SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD ++F + + +++ S G + + + + F P WSP+GD IAFT+ Sbjct: 288 FSFSPDRKSLIFSTVNDEGVTMFLTDSTGKNVQVLEEFSGRCVFKPSWSPKGDKIAFTQG 347 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL-------IFSRKKDGDTGSKL 418 + + + DG+ ++L+ S + W PSG + +F DG T +L Sbjct: 348 TD----LHTINPDGTGKKLI--SSAITDYEWHPSGDFISFIASDSVFVASPDGSTKIQL 400 >gi|126664003|ref|ZP_01734997.1| WD40-like beta Propeller [Flavobacteria bacterium BAL38] gi|126623952|gb|EAZ94646.1| WD40-like beta Propeller [Flavobacteria bacterium BAL38] Length = 518 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 22/168 (13%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY DL N T++LTNT + A SPD +I F S R G ++Y M +G++ K+I Sbjct: 138 FDIYIADLNGNITKQLTNTPGYDAEAVVSPDGKKIAFTSIRSGDLEIYTMDIDGTNLKQI 197 Query: 342 ------------SQDKEASYF---DPVWSPQ----GDLIAFTKFSGEKFAIGVMKKDGSQ 382 S D + F P + + DL+A + + I DGS Sbjct: 198 TYGLGYDGGCFFSHDSKKIVFRSSRPKTAEEVKDYKDLLAQNLVAPSEMEIYTCNIDGSD 257 Query: 383 ERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRN 427 + + AP + PS + +IFS G +L+ ID+ G N Sbjct: 258 LKQITHLGKANWAPYFHPSDKKIIFSSNHHSTRGYDFQLFMIDITGEN 305 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 35/265 (13%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYAT 230 +FN + L + V +G + + DG +I Y T + D P P + K +A Sbjct: 79 EFNEKSL---QLVSTGKGRTTCSYYMPDGKHILYASTHASDHACPAPP-KPIEGKYLWAI 134 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 Y + DI Y+ D K++ N S +GK+ + + ++IY++D+ Sbjct: 135 YPEFDI---YIADLN-GNITKQLTNTPGYDAEAVVSPDGKKIAFTSIRSGDLEIYTMDID 190 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDR--------------------EGKEQLYV 330 +++T L + +S DS +IVF S R + ++Y Sbjct: 191 GTNLKQITYGLGYDGGCFFSHDSKKIVFRSSRPKTAEEVKDYKDLLAQNLVAPSEMEIYT 250 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERLL 386 +GSD K+I+ +A++ P + P I F+ G F + ++ G + + Sbjct: 251 CNIDGSDLKQITHLGKANW-APYFHPSDKKIIFSSNHHSTRGYDFQLFMIDITGENLQQI 309 Query: 387 VEDSNLQA-PTWSPSGRSLIFSRKK 410 +S A P +SP G+ L+FS + Sbjct: 310 TWESEFNAFPMFSPDGKKLVFSSNR 334 >gi|120596842|ref|YP_961416.1| amidohydrolase [Shewanella sp. W3-18-1] gi|120556935|gb|ABM22862.1| amidohydrolase [Shewanella sp. W3-18-1] Length = 1062 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++G + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMDADGKKPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 ++ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 KETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDEK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + DK + P WS G I FT + Sbjct: 369 AQVSPDGSKVTFEA--LGKIWLKSL-PDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + + V+ K G ++L E PT+SP+G +++ + + G+ + Sbjct: 426 NDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPNGELVVYRKTQGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ + ++ Y + Sbjct: 486 LYKVDIKGKQNSKLSADGYQA 506 >gi|146291120|ref|YP_001181544.1| amidohydrolase [Shewanella putrefaciens CN-32] gi|145562810|gb|ABP73745.1| amidohydrolase [Shewanella putrefaciens CN-32] Length = 1062 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++G + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMDADGKKPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 ++ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 KETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVTGGEGVK---LTERPNDEK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + DK + P WS G I FT + Sbjct: 369 AQVSPDGSKVTFEA--LGKIWLKSL-PDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + + V+ K G ++L E PT+SP+G +++ + + G+ + Sbjct: 426 NDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPNGELVVYRKTQGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY DL + I++ Y + Sbjct: 486 LYKADLKTKQNKKISSDGYQA 506 >gi|319424426|gb|ADV52500.1| amidohydrolase [Shewanella putrefaciens 200] Length = 1062 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSPD I F SD +G + +++M ++G + ++ Sbjct: 73 DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIWIMDADGKKPRTVT 132 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 ++ P WSP L+A F+ GE + V +G + L E N Sbjct: 133 KETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVTGGEGVK---LTERPNDEK 189 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 190 DLGEPAYSPDGRYIYFSQ 207 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + DK + P WS G I FT + Sbjct: 369 AQVSPDGSKVAFEA--LGKIWLKSL-PDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTW 425 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 S + + + V+ K G ++L E PT+SP+G +++ + + G+ + Sbjct: 426 SDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPNGELVVYRKTQGGNLTPRTWSQEPG 485 Query: 418 LYSIDLNGRNETLINTPAYAS 438 LY +D+ G+ + I+ Y + Sbjct: 486 LYKVDIKGKQNSKISADGYQA 506 >gi|254442939|ref|ZP_05056415.1| hypothetical protein VDG1235_1173 [Verrucomicrobiae bacterium DG1235] gi|198257247|gb|EDY81555.1| hypothetical protein VDG1235_1173 [Verrucomicrobiae bacterium DG1235] Length = 469 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 21/181 (11%) Query: 246 IDRAPKRIGNFRSMIL-APRF----SSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTN 299 I + P R G + L P F S + K + + ++ +I+ E +LT+ Sbjct: 282 IYKLPVRGGIPEQLTLQGPSFLHGWSPDNKYVIYTAERGGKWNIWRTTTDGKGEEAQLTD 341 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + ++ + YSPD I F S R G Q++ M+++GS+ ++++ D+ ++F P SP G Sbjct: 342 SPGLSDGSEYSPDGKYIYFNSTRSGLMQIWRMKADGSEPEQVTDDQYNNWF-PHLSPDGK 400 Query: 360 LIAFTKFSGE----------KFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLI 405 + F + + + M G R++ + P+WSP GR + Sbjct: 401 TLVFLSYGQDVEPANHPYYKHVFLRTMPVSGGAPRIVAYLYGGQGTINVPSWSPDGRKVA 460 Query: 406 F 406 F Sbjct: 461 F 461 >gi|332665943|ref|YP_004448731.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] gi|332334757|gb|AEE51858.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] Length = 1076 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 14/151 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDRE 323 S G+RAL + +I++V ++ LT ++ + ++SPD +I + SD Sbjct: 314 LSPTGQRALF----EHRGEIFTVPKENGDWRNLTQSSGAADRFPAWSPDGQKIAWFSDAS 369 Query: 324 GKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI----GVMKK 378 G+ QL + G ++ R I+ +K +F P WSP G IA+T + I GV KK Sbjct: 370 GEYQLMIGDQAGLEKPRAIAIEKPTFFFRPAWSPDGKYIAYTDTHLRLWYIDVASGVSKK 429 Query: 379 -DGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 D +V N PTWSP + + +SR Sbjct: 430 VDNEPYAHVVRTMN---PTWSPDSKWIAYSR 457 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 16/111 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +GK + Q D D++ + + A +RLT +++ + PD ++F S R Sbjct: 69 PHFSPDGKTIAFTGQYDGNTDVFVLPTEGGAPKRLTWHPGVDVVQGWMPDGKSVLFRSGR 128 Query: 323 EG----KEQLYVMQSNGSDQK----------RISQDKEASYFDPV--WSPQ 357 G Q Y + G +K IS++ + + + P+ W P+ Sbjct: 129 AGVPTRSNQFYSVPVEGGFEKMLPIPQAAFGEISENGQYAAYQPITFWDPE 179 >gi|284030771|ref|YP_003380702.1| WD40 domain-containing protein beta Propeller [Kribbella flavida DSM 17836] gi|283810064|gb|ADB31903.1| WD40 domain protein beta Propeller [Kribbella flavida DSM 17836] Length = 1043 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 7/148 (4%) Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 +R T T N + SP+ ++ F+ ++V + G +R++ D + + P W Sbjct: 54 QRATLTEGTNFMVAVSPEGRRLAFDL----VTAIWVTPATGGSAQRLTDDLQDAT-RPRW 108 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G + F + F + ++ DG S +L + + P ++P GRS++FS + G+ Sbjct: 109 SPDGRRLVFQSYRDGNFHLWTIQPDGRSLRQLTTGRHDHREPHFTPDGRSIVFSSDRGGN 168 Query: 414 TGSKLYSIDLN-GRNETLINTPAYASDP 440 ++ +DL+ G L PA ++P Sbjct: 169 GSYGIHRLDLSTGAIVALTEDPAEEAEP 196 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D I+ + +RLT+ L +SPD ++VF+S R+G L+ +Q +G Sbjct: 78 DLVTAIWVTPATGGSAQRLTDDLQDATRPRWSPDGRRLVFQSYRDGNFHLWTIQPDGRSL 137 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL--LVEDSNLQA-P 395 ++++ + + +P ++P G I F+ G + G+ + D S + L ED +A P Sbjct: 138 RQLTTGRH-DHREPHFTPDGRSIVFSSDRGGNGSYGIHRLDLSTGAIVALTEDPAEEAEP 196 Query: 396 TWSPSGRSLIFS 407 SP GR + F+ Sbjct: 197 VVSPDGRRIAFT 208 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PR+S +G+R + +D ++++ + +LT + ++PD IVF SDR Sbjct: 106 PRWSPDGRRLVFQSYRDGNFHLWTIQPDGRSLRQLTTGRHDHREPHFTPDGRSIVFSSDR 165 Query: 323 EGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 G + + + S ++ + A +PV SP G IAFT + + + G Sbjct: 166 GGNGSYGIHRLDLSTGAIVALTEDPAEEAEPVVSPDGRRIAFTVDTAAIVELDLAT--GV 223 Query: 382 QERLLVEDSNLQ--APTWSPSGR 402 + ++ + + P +SPSG+ Sbjct: 224 RRTVVAAQTGITVFGPAYSPSGQ 246 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +P FSP+ + + YA+ D + ++L D + ++ + APRFS +G++ ++ Sbjct: 379 DPDFSPDGRSLLYAS-DRDGTADLWLHDL-ANGTDTKVSSLPGAQTAPRFSPDGRQ--VA 434 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------REGKEQ- 327 Q + + + +DL S +LT TLF S+SPD IV + REG Q Sbjct: 435 YQDQDGI-AWMLDLGSGQVRQLTPTLFQPGRVSWSPDGRTIVLAAVKPFTKRFREGTSQL 493 Query: 328 LYVMQSNGSDQ--KRISQDKEASYFD--PVWSPQGDLIAF 363 LYV ++ S + + + A+ D PV+SP G +AF Sbjct: 494 LYVDVASTSFEYVEPMPFRSLATRGDDGPVFSPDGRWLAF 533 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 17/187 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRID-RAPKRIGNFRSMILAPRFSSNGKRALIS 275 PR+SP+ +++ + +Y D + +L + D R+ +++ R P F+ +G+ + S Sbjct: 106 PRWSPDGRRLVFQSYRDGNF---HLWTIQPDGRSLRQLTTGRHDHREPHFTPDGRSIVFS 162 Query: 276 VQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + + I+ +DL + A LT SPD +I F D +L + + Sbjct: 163 SDRGGNGSYGIHRLDLSTGAIVALTEDPAEEAEPVVSPDGRRIAFTVDTAAIVELDL--A 220 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--FAIGVMKKDGSQERLLVEDSN 391 G + ++ + F P +SP G L A + SG IG K Q+ V Sbjct: 221 TGVRRTVVAAQTGITVFGPAYSPSGQL-AHVRLSGPACDLVIGDAKVTSGQDVFAVP--- 276 Query: 392 LQAPTWS 398 P+W+ Sbjct: 277 ---PSWA 280 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 12/154 (7%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I +P S +G+ +S + A+ + D ++ + + + F N +SPD +++ Sbjct: 336 IASPTVSPDGR--WLSFRALNALWLAPTDGRARPRKIVADGYF-NSDPDFSPDGRSLLYA 392 Query: 320 SDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR+G L++ +NG+D K S + P +SP G +A+ G I M Sbjct: 393 SDRDGTADLWLHDLANGTDTKVSSL--PGAQTAPRFSPDGRQVAYQDQDG----IAWMLD 446 Query: 379 DGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKK 410 GS + + + Q +WSP GR+++ + K Sbjct: 447 LGSGQVRQLTPTLFQPGRVSWSPDGRTIVLAAVK 480 >gi|262194670|ref|YP_003265879.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078017|gb|ACY13986.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1609 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 120/266 (45%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + VVS + S+ + + DG + + + RFSP+ ++V + D +R++ Sbjct: 1283 QRVVSASLDGSVRIWNADGTGTPVVLRGHENEVLSTRFSPDGKRVVSGSMDKS--VRIWN 1340 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D P + +S + A FS +G+R L S D+ + I+ +D S L Sbjct: 1341 SDG--SGRPTVLRGHQSWVTATSFSPDGQRVL-STSADQTVRIWELD-GSRDPVVLRGHN 1396 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I +SAS+SPD Q V + R+G +++ ++GS RI D + + +SP G + Sbjct: 1397 NIVVSASFSPD-GQRVASASRDGTVRVW--NADGSGASRIIPDHGEAVWSVSFSPDGRRL 1453 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A + S + +GS L + + + +SP G+ ++ K D ++++ Sbjct: 1454 A-SASSDRTIRVWNAHGNGSPVILRGHEDGITSVDFSPDGQRILSGSK---DKTIRIWNA 1509 Query: 422 DLNG------RNETLINTPAYASDPQ 441 D +G R + ++T ++ D Q Sbjct: 1510 DGHGPPQILSRYKGAVHTAQFSPDGQ 1535 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 16/191 (8%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 RFSP+ Q+VA A+ D +R++ +D + R M+ + FS +G+R + S Sbjct: 983 RFSPDGQRVASASSD--ATVRIWRVDGAGETTVLR--GHSDMVTSVDFSPDGRR-VASAS 1037 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D+++ ++ D ER L + S +SPD +V S+ + V ++G+ Sbjct: 1038 RDKSVRVWRAD--GTGDERILIGHEGVVSSVRFSPDGRFLVSASE---DASVRVWNADGT 1092 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQA 394 RI +D + + +SP G IA T S +K I + DGS L++ ++++ Sbjct: 1093 GTPRIFRDHDEAVHSAEFSPDGARIAAT--SADK-TIRIWNADGSGTPLVLRGHEADVWT 1149 Query: 395 PTWSPSGRSLI 405 +SP G+ L+ Sbjct: 1150 ARFSPDGKRLV 1160 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 120/262 (45%), Gaps = 33/262 (12%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + + DG+ + + ++ RFSP+ +++ +YD + +R++ +T P + Sbjct: 1128 IWNADGSGTPLVLRGHEADVWTARFSPDGKRLVSTSYD--NTMRIW--NTDGSATPLVLR 1183 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 ++A FS +G+R ++S D ++ I++ D + ++ + ++SPD + Sbjct: 1184 GHEVAVVAADFSPDGQR-VVSASYDNSVRIWNADGTGTPLSLRGHDDWV-MDVAFSPDGA 1241 Query: 315 QIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW----SPQGDLIAFTKFSGE 369 +V S D+ + + S+ SD+ + + + D VW SP G + G Sbjct: 1242 HVVSASMDKSAR----IWPSHSSDELVVLR----GHLDQVWSADFSPDGQRVVSASLDG- 1292 Query: 370 KFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR- 426 ++ + DG+ +++ ++ + + +SP G+ ++ D ++++ D +GR Sbjct: 1293 --SVRIWNADGTGTPVVLRGHENEVLSTRFSPDGKRVV---SGSMDKSVRIWNSDGSGRP 1347 Query: 427 -----NETLINTPAYASDPQWV 443 +++ + +++ D Q V Sbjct: 1348 TVLRGHQSWVTATSFSPDGQRV 1369 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 19/163 (11%) Query: 171 GDFNSRILFVSESVVSGII-------------KNSLCVMDRDGANIRYLTPSRDQILFEP 217 G + RIL E VVS + S+ V + DG + D+ + Sbjct: 1049 GTGDERILIGHEGVVSSVRFSPDGRFLVSASEDASVRVWNADGTGTPRIFRDHDEAVHSA 1108 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ ++A AT D+ I R++ D P + + + RFS +GKR L+S Sbjct: 1109 EFSPDGARIA-ATSADKTI-RIWNADG--SGTPLVLRGHEADVWTARFSPDGKR-LVSTS 1163 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 D M I++ D + + + + ++A +SPD ++V S Sbjct: 1164 YDNTMRIWNTDGSATPLVLRGHEVAV-VAADFSPDGQRVVSAS 1205 >gi|226227728|ref|YP_002761834.1| tricorn protease [Gemmatimonas aurantiaca T-27] gi|226090919|dbj|BAH39364.1| tricorn protease [Gemmatimonas aurantiaca T-27] Length = 1113 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT-LFINISASYSPDSSQIVFESDRE 323 S+ GKRA + + + ++++ + LTN+ I+ +SPD I + SDR Sbjct: 321 LSATGKRAAVEARGE----VFTIPAEKGDVRNLTNSSASAEIAPIWSPDGKSIAWFSDRS 376 Query: 324 GKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G+ QL + G R I + + + P WSP G IAF F I ++ + Sbjct: 377 GEYQLVIAPQEGVGATREIVLPEPSRPYSPSWSPDGKTIAFQD---THFRIWLVDVASGK 433 Query: 383 ERLLVEDSNLQ-----APTWSPSGRSLIFSRK-KDGDTGSKLYSIDLNGRNETLINTPAY 436 ++ D P WSP R L + ++ K +Y ++ G + L + A Sbjct: 434 AKVADTDPYFMMDRSIVPVWSPDSRCLAYPKRLKSLLRAIFVYEVE-TGAVKQLTDGMAD 492 Query: 437 ASDPQW 442 AS+P W Sbjct: 493 ASNPAW 498 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R A +R+ +F+ + P+ S +G++ S + D+Y V ++ RLT + Sbjct: 59 RAGGAARRLTSFQGVTQNPKLSPDGRQVAFSAEYAGNTDVYVVPVEGGQPTRLTWHPSAD 118 Query: 305 ISASYSPDSSQIVFESDR 322 + ++PD +VF S R Sbjct: 119 VVQGWTPDGKSVVFASPR 136 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A +I+ V+ A RLT+ + + SPD Q+ F ++ G +YV+ G R Sbjct: 51 ANNIWVVERAGGAARRLTSFQGVTQNPKLSPDGRQVAFSAEYAGNTDVYVVPVEGGQPTR 110 Query: 341 ISQDKEASYFDPVWSPQGDLIAFT 364 ++ A W+P G + F Sbjct: 111 LTWHPSADVVQ-GWTPDGKSVVFA 133 >gi|56459714|ref|YP_154995.1| hypothetical protein IL0605 [Idiomarina loihiensis L2TR] gi|56178724|gb|AAV81446.1| Uncharacterized conserved secreted protein [Idiomarina loihiensis L2TR] Length = 1058 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + E+L + ++ YSP+ I F SD+ G + ++VM ++G++ + ++ Sbjct: 69 DIYRMPFGGGEAEKLIGGIAWHMQPVYSPNGRYIAFTSDQGGGDNIWVMDADGNNVRAVT 128 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSN----LQ 393 ++ P WSP + L+A F+ + + + + G L E N L Sbjct: 129 EETFRLLNSPAWSPDSEFLVARKHFTASRSLGAGEVWMYHRSGGSGVQLTERPNDQKDLG 188 Query: 394 APTWSPSGRSLIFSR 408 P +SP G+ + FS+ Sbjct: 189 EPAFSPDGKYIYFSQ 203 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 25/207 (12%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y M A K IG + + P +S NG+ + + +I+ +D N +T Sbjct: 70 IYRMPFGGGEAEKLIGGI-AWHMQPVYSPNGRYIAFTSDQGGGDNIWVMDADGNNVRAVT 128 Query: 299 NTLFINI-SASYSPDSSQIV----FESDRE-GKEQLYVMQSNGSDQKRISQ--DKEASYF 350 F + S ++SPDS +V F + R G ++++ +G ++++ + + Sbjct: 129 EETFRLLNSPAWSPDSEFLVARKHFTASRSLGAGEVWMYHRSGGSGVQLTERPNDQKDLG 188 Query: 351 DPVWSPQGDLIAFTK--FSGEKFAI------GVM------KKDGSQERLLVEDSNLQAPT 396 +P +SP G I F++ G+ F G+ ++ G E L+ PT Sbjct: 189 EPAFSPDGKYIYFSQDDTPGKTFHYSKDSLEGIYDIKRFERETGEIETLISGAGGAIRPT 248 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL 423 SP GR L + +++D D S LY +DL Sbjct: 249 PSPDGRYLAYIKREDFD--SVLYVLDL 273 >gi|115377195|ref|ZP_01464407.1| peptidase M28 [Stigmatella aurantiaca DW4/3-1] gi|310821212|ref|YP_003953570.1| peptidase m28 [Stigmatella aurantiaca DW4/3-1] gi|115365778|gb|EAU64801.1| peptidase M28 [Stigmatella aurantiaca DW4/3-1] gi|309394284|gb|ADO71743.1| Peptidase M28 [Stigmatella aurantiaca DW4/3-1] Length = 927 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 30/208 (14%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 +A YD D+ + + + R + G + + S + + +D +D+Y + Sbjct: 134 WALYDSYDVFKANADGSGVTRLTETPGYDAEGTVCAKDGS----IIFTSTRDGDIDLYRM 189 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESD--REGKE------------------Q 327 D RLTNT + A ++ D S+IV+ + R GKE + Sbjct: 190 DKDGGNVRRLTNTPGYDGGAFFNADCSKIVWRASRPRPGKELEDYQGLLARGLVRPSKLE 249 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----FSGEKFAIGVMKKDGSQ- 382 LYV ++GS+ K+I+ AS F P + P G I F+ G +F I + DGS Sbjct: 250 LYVANADGSEAKQITWLNAAS-FAPFFHPNGQRILFSSNYGDPKGREFDIWAVNVDGSNL 308 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 ER+ P +SP G+ L FS + Sbjct: 309 ERITTAPGFDGFPMFSPDGKWLAFSSNR 336 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 31/196 (15%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ D++ + + RLT T + + I+F S R+G LY M +G + + Sbjct: 138 DSYDVFKANADGSGVTRLTETPGYDAEGTVCAKDGSIIFTSTRDGDIDLYRMDKDGGNVR 197 Query: 340 RISQDK---EASYFDP-----VWSP------------QGDLIAFTKFSGEKFAIGVMKKD 379 R++ ++F+ VW QG L+A K + V D Sbjct: 198 RLTNTPGYDGGAFFNADCSKIVWRASRPRPGKELEDYQG-LLARGLVRPSKLELYVANAD 256 Query: 380 GSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGRNETLINT--- 433 GS+ + + ++ AP + P+G+ ++FS G + +++++++G N I T Sbjct: 257 GSEAKQITWLNAASFAPFFHPNGQRILFSSNYGDPKGREFDIWAVNVDGSNLERITTAPG 316 Query: 434 ----PAYASDPQWVGF 445 P ++ D +W+ F Sbjct: 317 FDGFPMFSPDGKWLAF 332 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 21/148 (14%) Query: 196 MDRDGANIRYL--TPSRDQILF-----------EPRFSPNQQKVAYATYDDEDILRVYLM 242 MD+DG N+R L TP D F R P ++ Y ++R + Sbjct: 189 MDKDGGNVRRLTNTPGYDGGAFFNADCSKIVWRASRPRPGKELEDYQGLLARGLVRPSKL 248 Query: 243 DTRIDRA----PKRIGNFRSMILAPRFSSNGKRALISVQ----KDEAMDIYSVDLQSNAT 294 + + A K+I + AP F NG+R L S K DI++V++ + Sbjct: 249 ELYVANADGSEAKQITWLNAASFAPFFHPNGQRILFSSNYGDPKGREFDIWAVNVDGSNL 308 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDR 322 ER+T + +SPD + F S+R Sbjct: 309 ERITTAPGFDGFPMFSPDGKWLAFSSNR 336 >gi|189460182|ref|ZP_03008967.1| hypothetical protein BACCOP_00819 [Bacteroides coprocola DSM 17136] gi|189433043|gb|EDV02028.1| hypothetical protein BACCOP_00819 [Bacteroides coprocola DSM 17136] Length = 1116 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 22/140 (15%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD +IVF K +Y +++ G + R+ SQD S +PVWSP G IAF Sbjct: 62 SPDGKEIVFCY----KGDIYKVKAAGGEAVRLTSQDSYES--NPVWSPDGKQIAFASDRF 115 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRK-----------KDGDTGS 416 F + +M DG + L +S + P T++P G+ ++FS K G T Sbjct: 116 GNFDLFIMPADGGTAKRLTMNSASEIPSTFTPDGKYVVFSASIQDPASSALFPKSGMT-- 173 Query: 417 KLYSIDL-NGRNETLINTPA 435 +LY + + GR + ++ TPA Sbjct: 174 ELYKVPVAGGRTQQMLGTPA 193 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V RLT+ + +SPD QI F SDR G L++M ++G KR++ Sbjct: 75 DIYKVKAAGGEAVRLTSQDSYESNPVWSPDGKQIAFASDRFGNFDLFIMPADGGTAKRLT 134 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + AS ++P G + F+ Sbjct: 135 MNS-ASEIPSTFTPDGKYVVFS 155 Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust. Identities = 72/335 (21%), Positives = 139/335 (41%), Gaps = 45/335 (13%) Query: 149 ASWRKIAHT--ISDDI--YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + WRK HT I+ D+ Y + TG+ + V+S K + +R+G + Sbjct: 215 SEWRK-HHTSSITRDVWMYDTKTGKHTNLTEVAGEDRNPVLSPDGKQVYFLSERNGGSFN 273 Query: 205 -YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-----DRAPKRIG---- 254 Y P + +P S V + + ++ L Y D I D PK++ Sbjct: 274 VYRFPLDNPKEIQPVTSFKTNPVRFLSMGNDGTL-CYTYDGEIYTQPVDGKPKKVAVSLV 332 Query: 255 -NFRSMILAPRFSSNGKRALISVQKDEAM-----DIYSVDLQSNATERLTNTLFINISAS 308 + + ++ F+ A++S + +++ ++ T+++T+T S Sbjct: 333 RDDEELPVSYSFTRGASEAVVSPDGKQVAFIVRGEVFVTSVEYGTTKQITHTPEAERGLS 392 Query: 309 YSPDSSQIVFESDREGKEQLYVMQ---------SNGS--DQKRISQDKEASYFDPVWSPQ 357 + D+ +V+ S+R GK LY+ + N + +++ + DK+ P +SP Sbjct: 393 FGADNRSLVYSSERNGKRDLYIAKISRKEDLNFPNATLIEEEPLIHDKKLERDYPQFSPD 452 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------TWSPSGR--SLIF-SR 408 G +AF + ++ + V+ D + R + + S +WSP G+ +L F Sbjct: 453 GKEVAFIE---DRNRLMVVNLDTKKVRQVTDGSTWYTRSGGFDYSWSPDGKWFTLEFIGN 509 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 K D + L S D G+ L N+ + P+WV Sbjct: 510 KHDPYSDIGLVSADGKGQIINLTNSGYTSGSPRWV 544 >gi|297181851|gb|ADI18030.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0200_19J16] Length = 428 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/297 (22%), Positives = 122/297 (41%), Gaps = 36/297 (12%) Query: 130 LWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 +W ++ + K F + R++ +SD ++ G SRI + ++ + Sbjct: 115 IWSQGKKEAVASKTFKLENERDIRELGLAVSDWFVENTLQFNGVATSRIAYTAQKINR-- 172 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT--YDDEDILRVYLMDTRI 246 + ++ + DG I+ RFS N +++ +D+++IL ++ Sbjct: 173 -RKNIMLSSYDGTVIQ-------------RFSYNLGSNNFSSWSFDNKNILYTTFTRSKA 218 Query: 247 DRAPKRIGNFRSMILA---------PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 A + RS ILA + +GK L+++ K DIYS +L + L Sbjct: 219 QLAIQPSIRLRSKILAFPVGSQPLGASWHPDGKSILLTLMKQGNADIYSYNLSDAKLQSL 278 Query: 298 TNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 N + S SPD +I F SD + Q+Y+ +RI+ + P WS Sbjct: 279 FNWKSLETSPHMSPDGKKIAFVSDTAYPRRPQIYIHNLATEKTERITFKGNYNS-SPKWS 337 Query: 356 PQGDLIAFTKFSGEKFAI---GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 P + + + F + ++ + Q +DS + P WSP+G+ +IFS K Sbjct: 338 PDSTKLVYERQKKNIFQLYKYNLLTRRHVQLTFGRDDS--EKPDWSPNGKQIIFSAK 392 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 16/176 (9%) Query: 193 LCVMDRDGANIRY--LTPSRDQILFE-------PRFSPNQQKVAYAT---YDDEDILRVY 240 L +M + A+I L+ ++ Q LF P SP+ +K+A+ + Y + ++ Sbjct: 255 LTLMKQGNADIYSYNLSDAKLQSLFNWKSLETSPHMSPDGKKIAFVSDTAYPRRPQIYIH 314 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + T GN+ S +P++S + + + QK +Y +L + +LT Sbjct: 315 NLATEKTERITFKGNYNS---SPKWSPDSTKLVYERQKKNIFQLYKYNLLTRRHVQLTFG 371 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWS 355 + +SP+ QI+F + + +LY + S G R+++ S +PVWS Sbjct: 372 RDDSEKPDWSPNGKQIIFSAKTKKVPKLYYISSFGGRTIRVTKTLPNISETNPVWS 427 >gi|168057343|ref|XP_001780675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667943|gb|EDQ54561.1| predicted protein [Physcomitrella patens subsp. patens] Length = 710 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 29/196 (14%) Query: 217 PRFSPNQQKVAYA-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA--- 272 P SP+ V++ + +D L V +D +R R S + R+ GK Sbjct: 390 PSISPDGSLVSFVDSGNDSSTLAVMKLDGSENRVIHR-----SNVFGERWDPKGKTIYAS 444 Query: 273 -------------LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 ++++Q + D+ + + N N SPD +VF Sbjct: 445 QGRVFASVKTVVRIVAIQDSDTADLGADETSHNYKYLTKEGTGNNAFPCPSPDGKYVVFR 504 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT----KFSGEK-FA 372 S R G++ LY+M + G ++K + + E + D P WSP + IAF+ +GE+ F+ Sbjct: 505 SGRTGRKNLYIMDAAGGEEKYLRRLTEGRWRDTMPAWSPDNEWIAFSSNRAHPTGERSFS 564 Query: 373 IGVMKKDGSQERLLVE 388 + +++ +G+ +L++ Sbjct: 565 LYLIRPNGTDLHMLLD 580 >gi|329889101|ref|ZP_08267444.1| mdsD protein [Brevundimonas diminuta ATCC 11568] gi|328844402|gb|EGF93966.1| mdsD protein [Brevundimonas diminuta ATCC 11568] Length = 1090 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + + + ++ YSPD I F SDR G + L+VM +GS+ +++S Sbjct: 74 DIYVMPIGGGEARPIASGVAWDMQPRYSPDGRFIAFTSDRAGGDNLWVMDRDGSNPRQVS 133 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVM----KKDGSQERLLVEDSNLQ--- 393 + P W+P I K S G M + G L E Q Sbjct: 134 SETFRLLNSPAWTPDSQFIVGRKHFTSSRSLGAGEMWMYHRSGGGSGVQLTERRTQQKDT 193 Query: 394 -APTWSPSGRSLIFS 407 P +SP GR + FS Sbjct: 194 GEPAFSPDGRYMYFS 208 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 29/196 (14%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQIV-- 317 + PR+S +G+ + + +++ +D SN + + T + S +++PDS IV Sbjct: 96 MQPRYSPDGRFIAFTSDRAGGDNLWVMDRDGSNPRQVSSETFRLLNSPAWTPDSQFIVGR 155 Query: 318 --FESDRE---GKEQLYVMQSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 F S R G+ +Y GS +R +Q K+ +P +SP G + F+ S Sbjct: 156 KHFTSSRSLGAGEMWMYHRSGGGSGVQLTERRTQQKDTG--EPAFSPDGRYMYFSDESTP 213 Query: 370 KFAIGVMKKDGSQ----ERLLVEDSNLQA----------PTWSPSGRSLIFSRKKDGDTG 415 K +Q RL E ++ PT SP G+SL F R+ Sbjct: 214 GGVFEYSKDPNTQLYVIRRLDRETGEIKPFVTGPGGSVRPTPSPDGKSLAFVRRDRYQ-- 271 Query: 416 SKLYSIDLNGRNETLI 431 S LY +DL ET I Sbjct: 272 STLYVMDLESGRETPI 287 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQ-SNG--SDQKRISQDKEASYFDPVWSPQGDLIAF 363 A SPD S++VFE+ L+V NG +R+++ + P WS G I + Sbjct: 371 AQTSPDGSKVVFEA----LGNLWVRDLRNGVAGTPRRLTRQSDHFELYPSWSRDGRSIVY 426 Query: 364 TKFSGEKF-AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 T ++ E +I V+ G + R + + + P +SP G+++++ DG S ++S Sbjct: 427 TTWNDENLGSIRVVPVAGGEGRTITTNPGHYLEPRFSPDGQTVVYRTSSDGYLRSAMWS 485 >gi|221195922|ref|ZP_03568969.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2M] gi|221202595|ref|ZP_03575614.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2] gi|221176529|gb|EEE08957.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2] gi|221182476|gb|EEE14876.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2M] Length = 675 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 69/251 (27%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILF-----EPRFSPNQQKVAYATYDDEDILRVYLMDT 244 +++L ++D DG P R Q+ F PR+ P +Q +A+ + D +++ + T Sbjct: 43 RSALWLVDIDGGR-----PPR-QLTFGNADSHPRWCPGEQALAFLS-DRGSGRQIHAIRT 95 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKR--ALISV------------QKDEAMD------- 283 A +R+ + S +++ +S +GK+ AL ++ DEA D Sbjct: 96 DGGEA-RRVTDLPSGVMSFEWSPDGKQLLALCTIAADPEQRGNTHGDSDEAADRPADAPR 154 Query: 284 ---------------------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 ++++D Q+ A+ RLT F A +SPD +I F R Sbjct: 155 VVWRLPYKLDGVGYTLDTEIHLHTIDAQTGASRRLTRGSFEVSEADWSPDGQRIAFTRTR 214 Query: 323 EG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 +G + ++V+ ++G + ++++ ++ F P WSP G IA IG Sbjct: 215 DGRFAHRTDVWVVDADGGNARQLTSTIASAAF-PRWSPDGRFIAL---------IGSEHD 264 Query: 379 DGSQERLLVED 389 +Q RL + D Sbjct: 265 GDAQMRLWLHD 275 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 13/241 (5%) Query: 210 RDQILFEPRFSPNQQKVAYATYD-DEDILR--VYLMDTRIDRAPKRIGNFRSMILAPRFS 266 RD + + RF + +T D D D R ++L+D R P+++ F + PR+ Sbjct: 14 RDIVDLQCRFEGDLAVCELSTPDRDADDYRSALWLVDIDGGRPPRQL-TFGNADSHPRWC 72 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + + I+++ R+T+ +S +SPD Q++ Sbjct: 73 PGEQALAFLSDRGSGRQIHAIRTDGGEARRVTDLPSGVMSFEWSPDGKQLLALCTIAADP 132 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWS-P-QGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + SD+ + D+ A VW P + D + +T E + + G+ R Sbjct: 133 EQRGNTHGDSDE---AADRPADAPRVVWRLPYKLDGVGYT-LDTEIHLHTIDAQTGASRR 188 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGRN-ETLINTPAYASDPQ 441 L + WSP G+ + F+R +DG + ++ +D +G N L +T A A+ P+ Sbjct: 189 LTRGSFEVSEADWSPDGQRIAFTRTRDGRFAHRTDVWVVDADGGNARQLTSTIASAAFPR 248 Query: 442 W 442 W Sbjct: 249 W 249 >gi|284040547|ref|YP_003390477.1| peptidase S41 [Spirosoma linguale DSM 74] gi|283819840|gb|ADB41678.1| peptidase S41 [Spirosoma linguale DSM 74] Length = 1097 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 41/253 (16%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR-- 264 TP+ EP SP+ ++A+ + D I P G R ++ P Sbjct: 29 TPTPKFAYAEPSLSPDGAEIAFVSGGD------------IWTVPAAGGEARLLVSHPDNE 76 Query: 265 ----FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +S +GK + D+Y + L++ T+RLT + ++S D I F+S Sbjct: 77 SRPLYSPDGKYLAFVSSRTGNGDVYLLTLETGTTKRLTYDDGAEVLNAWSRDGKMIYFQS 136 Query: 321 ---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---FSGEKFAIG 374 D G +Y + NG I+ D+ A+ F SP G +AF+ S + + G Sbjct: 137 TAKDISGMNDIYRVSVNGGTPMAITADRYANEFYSAPSPDGKTLAFSARGIASNQWWRKG 196 Query: 375 VMKKDGSQERLLVEDSNLQA---------------PTWSPSGRSLIFSRKKDGDTGSKLY 419 D S+ LL D+ A P WS G++L + D G L+ Sbjct: 197 HSHLDESEIWLLHTDAKKAATAYERLTEGGAKELWPMWSADGKALFYV--SDRTRGQNLW 254 Query: 420 SIDLNGRNETLIN 432 ++ L G+ L + Sbjct: 255 TLPLGGKPTMLTS 267 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 20/233 (8%) Query: 207 TPSRDQILFEPRF-----SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 +P+ D++ +F SP+ +KVA+ + + V+ T+ RI + Sbjct: 316 SPAVDRLKLTNQFRELALSPDGKKVAFVAHGE-----VFAASTKDGGDATRISTSAANES 370 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P ++ N + + Q+D A +Y D + RLT+ + S +SPD + + Sbjct: 371 QPVWTPNSRSLVYVSQRDGAAHLYRYDFATRDETRLTDGALDDSSPVFSPDGKSLAYV-- 428 Query: 322 REGKEQLYVMQSNGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVM 376 R G+E + + D + + + S VWSP G IAF + + F I V+ Sbjct: 429 RNGQELRVLDIATKKDRLLKKAYLGRPPFGSNGAVVWSPDGKWIAFASYGAKTFRNISVI 488 Query: 377 KKDGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + + + +N TWSP G+ ++FS + +T +++ IDL R+ Sbjct: 489 PAIGGESKPVSFLANTFGGNVTWSPDGKYILFSTTQRTET-AQIARIDLVPRS 540 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 22/245 (8%) Query: 201 ANIRYLTPSRD--QILFEPRFSPNQQ--KVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 AN Y PS D + F R + Q + ++ D+ +I ++ + A +R+ Sbjct: 166 ANEFYSAPSPDGKTLAFSARGIASNQWWRKGHSHLDESEIWLLHTDAKKAATAYERLTEG 225 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT--ERLTNTLFINISASYSPDSS 314 + L P +S++GK + +++++ L T +N + S SY D Sbjct: 226 GAKELWPMWSADGKALFYVSDRTRGQNLWTLPLGGKPTMLTSFSNGRVLWPSISY--DGK 283 Query: 315 QIVFESD---------REGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFT 364 IVFE D + L V + + + K + F + SP G +AF Sbjct: 284 SIVFERDFQLWKYDVASKQTAPLSVKLRGVAASPAVDRLKLTNQFRELALSPDGKKVAFV 343 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 GE FA K G R+ +N P W+P+ RSL++ ++DG + LY D Sbjct: 344 AH-GEVFAAST-KDGGDATRISTSAANESQPVWTPNSRSLVYVSQRDG--AAHLYRYDFA 399 Query: 425 GRNET 429 R+ET Sbjct: 400 TRDET 404 >gi|24371617|ref|NP_715659.1| amidohydrolase [Shewanella oneidensis MR-1] gi|24345370|gb|AAN53104.1|AE015453_6 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 1049 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + L + + YSP+ I F SD +G + +++M ++GS+ + ++ Sbjct: 60 DIYQIPVTGGEAKPLAQGISWQMQPVYSPNGKHIAFTSDADGGDNIWIMNADGSNPRTVT 119 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSN--- 391 + P WSP LI F+ GE + V +G + L E N Sbjct: 120 SETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWLYHVAGGEGVK---LTERPNDEK 176 Query: 392 -LQAPTWSPSGRSLIFSR 408 L P +SP GR + FS+ Sbjct: 177 DLGEPAYSPDGRYIYFSQ 194 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 24/185 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-- 317 + P +S NGK + D +I+ ++ + +T+ F + S ++SPDS ++ Sbjct: 82 MQPVYSPNGKHIAFTSDADGGDNIWIMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGR 141 Query: 318 --FESDRE-GKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTK--FSGEK 370 F + R G ++++ G + ++++ + E +P +SP G I F++ G+ Sbjct: 142 KHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKT 201 Query: 371 FAI------GVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G+ K K G+ E L+ PT SP G L + ++ D S L Sbjct: 202 FHYSKDSVNGIYKIKRYDTKTGNIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQ--SSL 259 Query: 419 YSIDL 423 Y +DL Sbjct: 260 YLLDL 264 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 12/141 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD S++ FE+ GK L + +G + + P WS G I FT + Sbjct: 356 AQVSPDGSKVAFEA--LGKIWLKSL-PDGKMSRLTELGNDIGELYPQWSRDGKNIVFTTW 412 Query: 367 SGE-KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------- 417 + + + A+ V+ K G ++L E PT++P+G +++ + + G+ + Sbjct: 413 NDQDQGAVQVISAKGGKAKQLTTEPGKYVEPTFAPNGELVVYRKTQGGNLTPRTWSQEPG 472 Query: 418 LYSIDLNGRNETLINTPAYAS 438 +Y +DL + T I Y + Sbjct: 473 IYKVDLKTKQNTKITAEGYQA 493 >gi|307102700|gb|EFN50969.1| hypothetical protein CHLNCDRAFT_141607 [Chlorella variabilis] Length = 357 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 N RI FV +G +L M DG+++R LTPS + P +SP+ +VAY+ D Sbjct: 32 NGRIAFVR---ATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGDRVAYSGRHD 88 Query: 234 E--DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQ 290 I V T + R G + I+ P FS +G+ + + D + ++ D Sbjct: 89 GVWKIWEVQADGTGLRRLTD--GPPGAAIMVPAFSPDGRFIVFEGTEADGSTTVWRADAA 146 Query: 291 --SNATERLT----NTLFINISASYSPDSSQIVFESDR---EGKEQLYVMQS 333 NAT RLT + ++ A SPD + F SDR G+ +++M+ Sbjct: 147 DGGNAT-RLTPADQSPSITDMGAKPSPDGQLLAFASDRGNAPGQYDVWLMEG 197 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 303 INISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I++ + + +I F G++ L+ M +GSD ++++ P WSP GD + Sbjct: 22 IHVHPEATAKNGRIAFVRATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGDRV 81 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 A++ + I ++ DG+ R L + + + P +SP GR ++F + D + + Sbjct: 82 AYSGRHDGVWKIWEVQADGTGLRRLTDGPPGAAIMVPAFSPDGRFIVF-EGTEADGSTTV 140 Query: 419 YSID-LNGRNETLINTPA 435 + D +G N T + TPA Sbjct: 141 WRADAADGGNATRL-TPA 157 >gi|302823172|ref|XP_002993240.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii] gi|300138910|gb|EFJ05661.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii] Length = 717 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLI 361 N S SPD IVF S R G + LY+M + ++ + + E ++ D + WS G+ I Sbjct: 525 NAFPSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWI 584 Query: 362 AFT----KFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 AF+ G F + ++ DGSQ ++ S + P +SP RSL+F+ Sbjct: 585 AFSSDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFT 637 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDL---QSNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK + + ++Y +D + + RLT + + AS+S D I F Sbjct: 528 PSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWIAFS 587 Query: 320 SDRE----GKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT 364 SDR G QLY ++ +GS R+ + P +SP + FT Sbjct: 588 SDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFT 637 >gi|293370700|ref|ZP_06617250.1| WD40-like protein [Bacteroides ovatus SD CMC 3f] gi|292634224|gb|EFF52763.1| WD40-like protein [Bacteroides ovatus SD CMC 3f] Length = 1096 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ + SY +PVWSP G IAF Sbjct: 28 ARISPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS-------- 416 F + +M DG R L S + P+ ++P G+ + FS GS Sbjct: 82 DRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYIFFSASIQDPVGSALFPTGAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + + GR E ++ TPA Sbjct: 142 TELYKVPVAGGRTEQVLGTPA 162 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G I F+ Sbjct: 104 Y-HSASEIPSAFTPDGKYIFFS 124 >gi|302824273|ref|XP_002993781.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii] gi|300138377|gb|EFJ05147.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii] Length = 722 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLI 361 N S SPD IVF S R G + LY+M + ++ + + E ++ D + WS G+ I Sbjct: 525 NAFPSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWI 584 Query: 362 AFT----KFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 AF+ G F + ++ DGSQ ++ S + P +SP RSL+F+ Sbjct: 585 AFSSDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFT 637 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDL---QSNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK + + ++Y +D + + RLT + + AS+S D I F Sbjct: 528 PSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWIAFS 587 Query: 320 SDRE----GKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT 364 SDR G QLY ++ +GS R+ + P +SP + FT Sbjct: 588 SDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFT 637 >gi|93005276|ref|YP_579713.1| WD-40-like beta propeller repeat-containing protein [Psychrobacter cryohalolentis K5] gi|92392954|gb|ABE74229.1| WD40-like beta Propeller [Psychrobacter cryohalolentis K5] Length = 340 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 18/245 (7%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI---LFEPRFSPNQQKVAY 228 D I +V E V ++L + DG+ ++ + DQ+ ++ P +S + Q +AY Sbjct: 62 DRQGYIAYVEEQGVGTAKISTLYRIRPDGSGLQLI----DQLNGYIYAPTWSADGQMLAY 117 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + ++Y+ D + + + N L+P FS +GK+ L S DIY + Sbjct: 118 SKQAARQHPKIYIYDVK-SSSHNLVVNVEGSNLSPSFSPDGKKLLYSSTVGGNADIYEMQ 176 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKE 346 L +T++LT + SY+ D V+ SD R G+ +Y + I+ Sbjct: 177 LSDGSTKQLTTLPSTEVQPSYASDGQSFVYTSDKVRAGRPSIYRYSFATGNAALITTGGY 236 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLI 405 A+ P S +A+ +G K A+ +M G + + + ++ L P SPSG+ + Sbjct: 237 AA--SPQLSLDSQRLAY--LNGRKAAV-MMLTTG--QVINLAETGLDEPARLSPSGQYAL 289 Query: 406 FSRKK 410 + ++ Sbjct: 290 YPTRQ 294 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSL 404 E S P +SP G + ++ G I M+ DGS ++L S P+++ G+S Sbjct: 145 EGSNLSPSFSPDGKKLLYSSTVGGNADIYEMQLSDGSTKQLTTLPSTEVQPSYASDGQSF 204 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +++ K +Y N LI T YA+ PQ Sbjct: 205 VYTSDKVRAGRPSIYRYSFATGNAALITTGGYAASPQ 241 >gi|158317342|ref|YP_001509850.1| serine/threonine protein kinase [Frankia sp. EAN1pec] gi|158112747|gb|ABW14944.1| serine/threonine protein kinase [Frankia sp. EAN1pec] Length = 721 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 300 TLFINISASYSPDSSQIVFES--DREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 T+ + S SPD +V S D G LYV+ +GS R+ +A+ DP WS Sbjct: 525 TIADDARPSLSPDGKFLVVRSTTDESGFPNPGLYVVSLDGSGLFRLGAKPQAT--DPAWS 582 Query: 356 PQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVE-DSNLQA-PTWSPSGRSLIFSRKK 410 P G+LIA+ E F + + + SQ + N A PT+SP G+ + FSR+ Sbjct: 583 PSGELIAYWSSETESDRGFIVTIPARPDSQPTPITNGQGNRDADPTFSPDGKRIAFSREV 642 Query: 411 DGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 DGD ++Y ++ +G E + P DP + Sbjct: 643 DGDL--EIYQMNTDGSAVERVTAEPGRDQDPAY 673 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%) Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 K F S PA+ K+ TI+DD S++ G F ++ S + SG L V+ DG+ Sbjct: 514 KLFTSGPAA--KL--TIADDARPSLS-PDGKF---LVVRSTTDESGFPNPGLYVVSLDGS 565 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMI 260 + L ++ Q +P +SP+ + +AY + + E D + + R D P I N + Sbjct: 566 GLFRLG-AKPQAT-DPAWSPSGELIAYWSSETESDRGFIVTIPARPDSQPTPITNGQGNR 623 Query: 261 LA-PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 A P FS +GKR S + D ++IY ++ +A ER+T + +YSPD + F Sbjct: 624 DADPTFSPDGKRIAFSREVDGDLEIYQMNTDGSAVERVTAEPGRDQDPAYSPDGKLLSFT 683 Query: 320 SDR 322 +R Sbjct: 684 GER 686 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 13/175 (7%) Query: 263 PRFSSNGKRALISVQKDEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 P S +GK ++ DE+ +Y V L + RL A +SP I + Sbjct: 532 PSLSPDGKFLVVRSTTDESGFPNPGLYVVSLDGSGLFRLGAKPQATDPA-WSPSGELIAY 590 Query: 319 ESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 S ++ +++ S I+ + DP +SP G IAF++ I Sbjct: 591 WSSETESDRGFIVTIPARPDSQPTPITNGQGNRDADPTFSPDGKRIAFSREVDGDLEIYQ 650 Query: 376 MKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 M DGS ER+ E Q P +SP G+ L F+ G+ G+ L I L +T Sbjct: 651 MNTDGSAVERVTAEPGRDQDPAYSPDGKLLSFT----GERGTPLRRIYLTDPADT 701 >gi|297162553|gb|ADI12265.1| amidohydrolase [Streptomyces bingchenggensis BCW-1] Length = 1056 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 8/131 (6%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDP 352 T ++T N SA+ SPD IV + L+ + + G + R++ DKEAS +P Sbjct: 47 TRQITVGQATNASAALSPDGRTIVMDL----LNLLWTLPAQGGEATRLTDIDKEAS--EP 100 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD 411 +SP G + + ++ F + + + DGS+ R L E D + + P +SP G+ + ++ + D Sbjct: 101 DFSPDGRRLVYQSYADGNFHLWLARADGSEARRLTEGDIDHREPRFSPDGKRIAYAAETD 160 Query: 412 GDTGSKLYSID 422 G + +D Sbjct: 161 GHYAIHVLDLD 171 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 8/181 (4%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA- 249 N L + G LT D+ EP FSP+ +++ Y +Y D + +L R D + Sbjct: 75 NLLWTLPAQGGEATRLT-DIDKEASEPDFSPDGRRLVYQSYADGNF---HLWLARADGSE 130 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS- 308 +R+ PRFS +GKR + + D I+ +DL S ++R T+ + + Sbjct: 131 ARRLTEGDIDHREPRFSPDGKRIAYAAETDGHYAIHVLDLDSGESKRWTSGTDATVQETQ 190 Query: 309 --YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + PDS IVF S + Q V + E P SP G +A+ Sbjct: 191 PFWRPDSKAIVFTSGKGDAPQSVVQVDADGKLTTLVTVTEGRVAGPSLSPDGTKLAYVHL 250 Query: 367 S 367 + Sbjct: 251 T 251 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 4/148 (2%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +G+R + D ++ + RLT + +SPD +I + ++ Sbjct: 100 PDFSPDGRRLVYQSYADGNFHLWLARADGSEARRLTEGDIDHREPRFSPDGKRIAYAAET 159 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKF-AIGVMKKD 379 +G ++V+ + + KR + +A+ + P W P I FT G+ ++ + D Sbjct: 160 DGHYAIHVLDLDSGESKRWTSGTDATVQETQPFWRPDSKAIVFTSGKGDAPQSVVQVDAD 219 Query: 380 GSQERLL-VEDSNLQAPTWSPSGRSLIF 406 G L+ V + + P+ SP G L + Sbjct: 220 GKLTTLVTVTEGRVAGPSLSPDGTKLAY 247 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 AP+++ I+ P S +GK+ + D I+ + S +++ IN + Sbjct: 329 APRKVKG----IVGPSLSPDGKQVAFAALGD----IWVGRIGSTPKAVVSDG-NINSDPA 379 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + PD S +V+ SDR G + S + R + + F PV++P G +AF+ +S Sbjct: 380 WHPDGSTLVYVSDRGGHAADLWLHDLESGENRRLTNLQGQLFGPVFAPDGKTVAFSFWS 438 >gi|91772443|ref|YP_565135.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM 6242] gi|91711458|gb|ABE51385.1| protein with TolB-like beta propeller domains [Methanococcoides burtonii DSM 6242] Length = 354 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 78/147 (53%), Gaps = 19/147 (12%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ++ ++SPDS +IV+ S+ + ++ M S+G+++ I D +PV++ GD + F Sbjct: 47 VAPAWSPDSDRIVYSSE----QTIWTMNSDGTNKNEI-YDSIVWDGEPVFNTDGDRLYFA 101 Query: 365 K-----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 +S + +I V+ DG + ++++++AP SP G L + K G+ +++ Sbjct: 102 SEHVNPYSAKFISIHVVDIDGLNRTQITKNADMRAPAVSPDGTQLAYLSKLSGNY--EIW 159 Query: 420 SIDLNGRNETLIN-------TPAYASD 439 +D++G N+T I PA++ D Sbjct: 160 VMDIDGSNQTQITDSDIDEGVPAWSPD 186 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 123/269 (45%), Gaps = 29/269 (10%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF--EPRFSPNQQKVAYATYD- 232 RI++ SE ++ M+ DG N + D I++ EP F+ + ++ +A+ Sbjct: 57 RIVYSSEQ--------TIWTMNSDGTNKNEI---YDSIVWDGEPVFNTDGDRLYFASEHV 105 Query: 233 ---DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + ++++D ID + + + AP S +G + + +I+ +D+ Sbjct: 106 NPYSAKFISIHVVD--IDGLNRTQITKNADMRAPAVSPDGTQLAYLSKLSGNYEIWVMDI 163 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEAS 348 + ++T++ ++SPD I++ EG + + N G I ++ + Sbjct: 164 DGSNQTQITDSDIDEGVPAWSPDGKHIIYS--LEGN----IWKVNIGPKVPSILKENYYT 217 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFS 407 ++PV++P+G +A+ + I +M DG ++L D + P WSP G+S+ +S Sbjct: 218 SYNPVFNPEGTKVAYVLETNGVKDIWIMNADGKGTKQLTFSDQDEIDPAWSPDGKSIAYS 277 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K G+ ++ ++L+ T+ + P Y Sbjct: 278 SNKAGEF--NIWKMELSMTEATIPHDPEY 304 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 15/169 (8%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + VMD DG+N +T S D P +SP+ + + Y+ + +I +V + + P Sbjct: 158 IWVMDIDGSNQTQITDS-DIDEGVPAWSPDGKHIIYSL--EGNIWKVNIGP----KVPSI 210 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P F+ G + ++ + DI+ ++ T++LT + I ++SPD Sbjct: 211 LKENYYTSYNPVFNPEGTKVAYVLETNGVKDIWIMNADGKGTKQLTFSDQDEIDPAWSPD 270 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I + S++ G+ ++ M+ +S + DP + + DL+ Sbjct: 271 GKSIAYSSNKAGEFNIWKME--------LSMTEATIPHDPEYKDEDDLV 311 >gi|298242082|ref|ZP_06965889.1| peptidase S41 [Ktedonobacter racemifer DSM 44963] gi|297555136|gb|EFH89000.1| peptidase S41 [Ktedonobacter racemifer DSM 44963] Length = 1119 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R+ + K ++ V +D D++ V + ERLT +SPD + + F E Sbjct: 28 RYPTIYKDYIVFVTED---DLWLVSSEGGRAERLTAGQGRMSHPHFSPDGNWLAFVGREE 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---KFAI--GVMKK 378 G ++YVM + G +R++ D W+P G I + SG+ K+ + + Sbjct: 85 GPGEVYVMPALGGPARRLTFDGGTCTVL-GWTPDGGAILYASSSGQFTAKYTVIYAISPA 143 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNET 429 G ++L V +N A ++ P G +I + R + G G +G + Sbjct: 144 GGPPQQLPVGMAN--AISYGPEGGVVIGRNIEEPAYWKRYRGGTVGHLWCDTTGSGTFQR 201 Query: 430 LINTPAYASDPQWVG 444 L+N +DP WVG Sbjct: 202 LLNIHGNVADPCWVG 216 >gi|51892044|ref|YP_074735.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] gi|51855733|dbj|BAD39891.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] Length = 717 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 46/150 (30%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--- 365 +SPD +VF S+R G QL+++ G + ++I++ K +PVWSP G IAFT Sbjct: 71 WSPDGRHLVFVSNRSGSNQLWLLSMEGGEARQITRIK-GGVQNPVWSPDGRTIAFTANLT 129 Query: 366 ---------------------------------------FSGEKFAIGVMKKDGSQERLL 386 ++ E+ I V+ DG + R L Sbjct: 130 EAGIQPEGGDEDDQDLYRKYTKDVRVITRLHYKMDGVGFYTDERKHICVVDVDGGEPRQL 189 Query: 387 V-EDSNLQAPTWSPSGRSLIFS--RKKDGD 413 D N +W+P GR L+F+ R++D D Sbjct: 190 TFGDFNHLDVSWTPDGRGLVFAANRREDRD 219 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 58/269 (21%), Positives = 101/269 (37%), Gaps = 55/269 (20%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT----- 230 ++FVS S N L ++ +G R +T + + P +SP+ + +A+ Sbjct: 77 HLVFVSNRSGS----NQLWLLSMEGGEARQITRIKGGVQ-NPVWSPDGRTIAFTANLTEA 131 Query: 231 --------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 DD+D+ R Y D R+ I + +G + DE Sbjct: 132 GIQPEGGDEDDQDLYRKYTKDVRV-------------ITRLHYKMDG----VGFYTDERK 174 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN-----GSD 337 I VD+ +LT F ++ S++PD +VF ++R Y + SD Sbjct: 175 HICVVDVDGGEPRQLTFGDFNHLDVSWTPDGRGLVFAANRREDRDWYPGHVDLWYLSLSD 234 Query: 338 QKRISQDKEASYFDPVWSPQGDLI-AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 Q + +S + P P D A + G + + DG+ +P+ Sbjct: 235 D---GQGQRSSAYTPPEGPGPDRCEAAEETQGNCMPVRLTPGDGTLA--------CSSPS 283 Query: 397 WSPSGRSLIFSRKKDGDTG---SKLYSID 422 SP GR + F ++G + LY +D Sbjct: 284 ASPDGRMIAFLASDPAESGYGLTGLYVLD 312 >gi|242037461|ref|XP_002466125.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor] gi|241919979|gb|EER93123.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor] Length = 690 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLI 361 N S SPD +VF S R G + LY+M + + I + E + D + WSP G+ I Sbjct: 487 NAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEASGIRRLTEGPWSDTMCNWSPDGEWI 546 Query: 362 AFT----KFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 AF G F I ++ +G+ R +V ++ P +SP ++L+F+ Sbjct: 547 AFASDRHNPGGGSFGIYMVHPNGTGLRRVVHSTDGGRTNHPWFSPDSKTLVFT 599 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 29/163 (17%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK + + ++Y +D + ++ RLT + + ++SPD I F Sbjct: 490 PSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEASGIRRLTEGPWSDTMCNWSPDGEWIAFA 549 Query: 320 SDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW-SPQGDLIAFT---------- 364 SDR G +Y++ NG+ +R+ + + W SP + FT Sbjct: 550 SDRHNPGGGSFGIYMVHPNGTGLRRVVHSTDGGRTNHPWFSPDSKTLVFTSDYAAVSAEP 609 Query: 365 -------KFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSP 399 + GE F + + DGS R L +S P+W+P Sbjct: 610 ISNPHHYQPYGEIFTVNI---DGSGIRRLTHNSFEDGTPSWTP 649 >gi|84497170|ref|ZP_00995992.1| WD40-like Beta Propeller protein [Janibacter sp. HTCC2649] gi|84382058|gb|EAP97940.1| WD40-like Beta Propeller protein [Janibacter sp. HTCC2649] Length = 352 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 30/195 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE- 326 NG+ + + + ++ + A ++T+ F N A++SPD +++ F+S R E Sbjct: 40 NGRISFMRMDDTGHWQTWTANPDLTAQHKITDGDFDNSWAAWSPDGTRLAFDSSRLAPEA 99 Query: 327 -----QLYVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGE---KFAIGVM 376 +++ M +G+D + Q +F P WSP G IAFT G+ I + Sbjct: 100 NGDLKEIFTMAPDGTD---VHQVTNLGFFAGQPTWSPDGRWIAFTTDGGDYPTSQGIYAI 156 Query: 377 KKDGSQ-ERLLVEDSN-----LQAPTWSPSGRSLIFSRKKDG----------DTGSKLYS 420 DG+ R++ + L AP +SP G L ++ + G S L++ Sbjct: 157 HPDGTGLHRIVALPAGPRSVWLDAPRFSPDGSRLAYTFFQGGKPTRSPWSWKGETSALWT 216 Query: 421 IDLNGRNETLINTPA 435 + ++G N + P Sbjct: 217 VGVDGANARQVVAPG 231 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 33/181 (18%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F S LAP +NG I + D++ V TN F ++SPD Sbjct: 90 FDSSRLAPE--ANGDLKEIFTMAPDGTDVHQV----------TNLGFFAGQPTWSPDGRW 137 Query: 316 IVFESDR---EGKEQLYVMQSNGSDQKRI---SQDKEASYFD-PVWSPQGDLIAFTKFSG 368 I F +D + +Y + +G+ RI + + D P +SP G +A+T F G Sbjct: 138 IAFTTDGGDYPTSQGIYAIHPDGTGLHRIVALPAGPRSVWLDAPRFSPDGSRLAYTFFQG 197 Query: 369 ------------EKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTG 415 E A+ + DG+ R +V + WSP GR L+F + + D G Sbjct: 198 GKPTRSPWSWKGETSALWTVGVDGANARQVVAPGQKVGDADWSPDGRHLVFEQMGN-DPG 256 Query: 416 S 416 S Sbjct: 257 S 257 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 41/245 (16%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVV---SGIIKNSLCVMDRDGANIRYLTPSRDQ 212 H I+D + + +R+ F S + +G +K + M DG ++ +T + Sbjct: 67 HKITDGDFDNSWAAWSPDGTRLAFDSSRLAPEANGDLKE-IFTMAPDGTDVHQVT-NLGF 124 Query: 213 ILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-APRFS 266 +P +SP+ + +A+ T + I ++ T + R RS+ L APRFS Sbjct: 125 FAGQPTWSPDGRWIAFTTDGGDYPTSQGIYAIHPDGTGLHRIVALPAGPRSVWLDAPRFS 184 Query: 267 SNGKRALISV------------QKDEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDS 313 +G R + K E +++V + +NA + + + A +SPD Sbjct: 185 PDGSRLAYTFFQGGKPTRSPWSWKGETSALWTVGVDGANARQVVAPGQKVG-DADWSPDG 243 Query: 314 SQIVFE---SDREGKEQLYVMQSNGSDQKRISQDK------------EASYFDPVWSPQG 358 +VFE +D ++ + + G +SQD +AS FDPV+SP G Sbjct: 244 RHLVFEQMGNDPGSLSRVLRVPATGGGITALSQDTGLRGGRSDNWSFQAS-FDPVYSPDG 302 Query: 359 DLIAF 363 I F Sbjct: 303 TTILF 307 >gi|167765001|ref|ZP_02437122.1| hypothetical protein BACSTE_03395 [Bacteroides stercoris ATCC 43183] gi|167697670|gb|EDS14249.1| hypothetical protein BACSTE_03395 [Bacteroides stercoris ATCC 43183] Length = 1088 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++IVF K +Y + + G +++ +E+ PVWSP G IAF Sbjct: 31 SPDGTEIVFCY----KGDIYKVSAKGGTATQLTT-QESYESSPVWSPDGKQIAFASDRQG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KLY 419 F + VM DG + L +S + P+ ++P G+ ++FS GS +LY Sbjct: 86 NFDVFVMPSDGGAAQRLTTNSAGEIPSAFTPDGKYILFSAAIQDPAGSALFPSPAMTELY 145 Query: 420 SID-LNGRNETLINTPAYA 437 + GR E ++ TPA A Sbjct: 146 KVPATGGRTEQVLGTPAEA 164 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT S +SPD QI F SDR+G ++VM S+G +R++ Sbjct: 44 DIYKVSAKGGTATQLTTQESYESSPVWSPDGKQIAFASDRQGNFDVFVMPSDGGAAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + A ++P G I F+ Sbjct: 104 TNS-AGEIPSAFTPDGKYILFS 124 >gi|224438537|ref|ZP_03659457.1| translocation protein TolB [Helicobacter cinaedi CCUG 18818] gi|313144963|ref|ZP_07807156.1| protein tolB [Helicobacter cinaedi CCUG 18818] gi|313129994|gb|EFR47611.1| protein tolB [Helicobacter cinaedi CCUG 18818] Length = 417 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/321 (20%), Positives = 132/321 (41%), Gaps = 38/321 (11%) Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L L+D+ K I K + + + +AH ++ DI I + R++ +S Sbjct: 100 LTATLSLYDINTSKHIFTKTYTENDIKRFPFLAHNMTIDINSYIKAPSIQWMQRLVVLSR 159 Query: 183 SVVSGIIKNSLC--------VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 V SG + +C V+ + G NI P+++ ++Q+ Y T E Sbjct: 160 YVGSGSSEILICDYTLTYQKVVVKGGLNIF------------PKWADSKQESIYYTKYLE 207 Query: 235 --DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 I++ L +I++ G + + S NG+ ++S+ D+Y + +S Sbjct: 208 VPTIVKHNLATGQIEQLVGSEG----VAIVSDVSKNGENLILSLSPTALSDLYIFNTKSK 263 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 RLTN I++ + D +I+F SDR G +++M+ +G +++ + Sbjct: 264 NLRRLTNYSGIDVDGKFVNDEKEIIFVSDRLGYPNIFMMRLDGGGTEQVVLHGRN---NS 320 Query: 353 VWSPQGDLIAFT------KFSGEKFAIGVMK-KDGSQE-RLLVEDSNLQAPTWSPSGRSL 404 + G +T +F G F + ++ GS R L + Q P +S G S+ Sbjct: 321 AITSNGKYAVYTSRETNNEFGGNTFNLYLISLAPGSNYIRRLTANGKNQMPKYSSDGGSI 380 Query: 405 IFSRKKDGDTGSKLYSIDLNG 425 ++ + + + +D N Sbjct: 381 MYLKHYKNQSALGIIRVDYNA 401 >gi|282861616|ref|ZP_06270680.1| WD40 domain protein beta Propeller protein [Streptomyces sp. ACTE] gi|282563432|gb|EFB68970.1| WD40 domain protein beta Propeller protein [Streptomyces sp. ACTE] Length = 1069 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 21/182 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRI 341 +++V + +RLT++ +S ++SPD + I + SD + Q+Y +G ++RI Sbjct: 160 LWTVRTDGSGLQRLTDSAADEVSPTFSPDGTLIAYSSDSDPARGRQIYERALSGGPERRI 219 Query: 342 SQDKEASYFDPVWSP-----QGDLIAFT----KFSGEKFAIGVMKKDG-SQERLLVEDS- 390 S + +P W+P DL+AFT GE+ + DG +R ++ Sbjct: 220 SDAPAGNATEPSWNPVDDDAHRDLVAFTLQTGGGPGEELEPRLWVTDGKGGDRAVLTGGP 279 Query: 391 ---NLQAPTWSPSGRSLIF---SRKKDGDTGSKLYSIDLN--GRNETLINTPAYASDPQW 442 + ++P W P G L+F + D +Y + G E L+N P W Sbjct: 280 AEWSTKSPAWLPDGGGLLFLSPDQTCSCDPFDNVYRVGTETYGAPELLLNENRAVDSPTW 339 Query: 443 VG 444 +G Sbjct: 340 LG 341 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 54/255 (21%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR- 257 DG + +L+P DQ F N +V TY ++L L + R +P +G Sbjct: 292 DGGGLLFLSP--DQTCSCDPFD-NVYRVGTETYGAPELL---LNENRAVDSPTWLGPAAT 345 Query: 258 -SMILAPRFSSNGKRALI-------SVQKDEAMDIYSVDLQSNA-TERLTNTLFINISA- 307 S+++A ++ +AL+ S ++ M + D S T+ + LF Sbjct: 346 GSVVVARTSGASPHKALLLDMRQDGSDPRNLGMTLLQEDPASETNTDPALDPLFDPAEGF 405 Query: 308 -------SYSPDSSQIV---FESDREGK-EQLYVMQSNGSDQKRISQDKEASY---FDPV 353 SY+PD +IV FE G+ ++++++ ++G+ + + DP Sbjct: 406 DPWTERQSYTPDGRRIVVTRFEDTEAGRIQRIWLVDADGAKPEAMPLAGRGPLDRDTDPA 465 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------------------P 395 +SP G IAFT+ + G + R+LV D+ A P Sbjct: 466 FSPDGTRIAFTRVT-----PGTDGDAPATARVLVADAVTGAITDEVVPPAGQSRGGDAQP 520 Query: 396 TWSPSGRSLIFSRKK 410 TWSP G +L F+R + Sbjct: 521 TWSPDGGTLAFTRDQ 535 >gi|119964335|ref|YP_947935.1| acylaminoacyl-peptidase [Arthrobacter aurescens TC1] gi|119951194|gb|ABM10105.1| putative acylaminoacyl-peptidase [Arthrobacter aurescens TC1] Length = 660 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 262 APRFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 AP +G +A++SV + + +++V L + R F + S ++SPD Sbjct: 3 APAIHPDGTKAVVSVTRPDFDADSYVGQLWNVPLDTTKFPRRITRGFRDSSPAFSPDGLV 62 Query: 316 IVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + F SD GK QLYV+++ G + +RI+ D+ A VW+P IAF E+ G Sbjct: 63 LAFLRSDPNGKPQLYVVEAAGGEPQRIT-DQHAGVGGFVWAPDSHRIAFEARVPEQGRYG 121 Query: 375 VMKKDGSQERLLVEDSNLQA 394 + GS ED+ L A Sbjct: 122 TVDGVGSG----AEDARLIA 137 >gi|116620509|ref|YP_822665.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] gi|116223671|gb|ABJ82380.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] Length = 1121 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 19/175 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ + + +RLT+ ++ +SPD + I F S+REG +YV+ + G ++++ Sbjct: 42 DLWIANENGSGAQRLTDNQARDVYPRFSPDGNWIAFSSNREGNYDVYVVAATGGKPRQLT 101 Query: 343 QDKEASYFDPV--WSPQGDLIAFTKFSGEKFAIGVMK-----KDGSQERLLVEDSNLQAP 395 S D V WSP G I FT G VM +G ER + D A Sbjct: 102 FH---SADDNVVNWSPDGKKILFTSARGNGVFPSVMTLWEIPAEGGIERPVPTDWGAWA- 157 Query: 396 TWSPSGRSLIFSRKKD--------GDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 ++SP G L F+R G + L+ ++L + T + Y + W Sbjct: 158 SYSPDGSKLAFTRHPATWSRKHYRGSYAADLWVMELASKKFTRLGNEDYKGNRLW 212 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 30/248 (12%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I F +V+ + N++ + G +T D LF P S + + + Y ED Sbjct: 234 IQFGGPAVMKSV--NNIWKISEKGGKETQVTHHADGNLFFPSISADGKTIVY-----EDN 286 Query: 237 LRVYLMDTR--------IDRAPKRIGNFRSMIL-----APRFSSNGKRALISVQKDEAMD 283 ++ +DT ID N R ++ A S + KRA I + Sbjct: 287 FGIWKLDTASGKSSEIVIDIKADSKENDRELVTLTDAQAFSLSPSNKRAAIVAHGE---- 342 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 I+++ +R++ + + +SP+ I F SDR G+E++Y+ G + K++S Sbjct: 343 IFTIATDRGEPQRVSESAWKEQEPRWSPNGKWIAFVSDRTGREEIYLSDELGKNAKKLS- 401 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSG 401 D + VW + +SG + ++ + + +L E N+ +SP G Sbjct: 402 DVDCDKNSLVWGADSKALL---WSGSDHKLRLVDVESGKTDILAQGEAGNITGAQFSPDG 458 Query: 402 RSLIFSRK 409 + L ++R+ Sbjct: 459 KYLSYARQ 466 >gi|283955278|ref|ZP_06372778.1| putative tolB protein [Campylobacter jejuni subsp. jejuni 414] gi|283793192|gb|EFC31961.1| putative tolB protein [Campylobacter jejuni subsp. jejuni 414] Length = 402 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S++G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDYDKPTLYRYDLNTNKASKVLSS-GGMVVASDVSADGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLRQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQVGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|311745254|ref|ZP_07719039.1| amidohydrolase family protein [Algoriphagus sp. PR1] gi|126577782|gb|EAZ82002.1| amidohydrolase family protein [Algoriphagus sp. PR1] Length = 1209 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ ++ +T + YSPD ++I+F SDR G + L+ + + D +I+ Sbjct: 93 DIYTIPIEGGKASPITTGMAYETHPRYSPDGTKILFTSDRAGSDNLWYIDMDKKDTVQIT 152 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVEDSN---LQAPTWS 398 +DK W+P + I K G + + + KDG L E+ P S Sbjct: 153 KDKNGDVPGADWTPDSEYIVVAK--GRRITKLWMYHKDGGGGIQLNENPGSIKTIDPFVS 210 Query: 399 PSGRSLIFSRK 409 P G+ + FS++ Sbjct: 211 PDGKKVYFSQR 221 Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust. Identities = 37/171 (21%), Positives = 79/171 (46%), Gaps = 12/171 (7%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESD 321 PR+S +G + L + + + +++ +D+ T ++T ++ A ++PDS IV Sbjct: 117 PRYSPDGTKILFTSDRAGSDNLWYIDMDKKDTVQITKDKNGDVPGADWTPDSEYIVVAKG 176 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEA-SYFDPVWSPQGDLIAFTKFSGE--------KFA 372 R +L++ +G +++++ + DP SP G + F++ SG ++ Sbjct: 177 RR-ITKLWMYHKDGGGGIQLNENPGSIKTIDPFVSPDGKKVYFSQRSGSWNYNALLPQYQ 235 Query: 373 IGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 IG D G + + PT S G+ +++ + + TG L +I+ Sbjct: 236 IGTYDFDKGELNTITSRYGSAFTPTLSDDGKWMVYGSRWEEKTGLVLRNIE 286 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRI 341 +Y +D R+T+ F ++SPD SQ+ F + EG + N + ++ Sbjct: 395 LYVMDYPEGEPRRVTDNDFTEAMPTWSPDGSQLAFVGWDESEGGQLFKASLGNTNTVTKL 454 Query: 342 SQDKEASYFDPVWSPQGDLIAF 363 S +K A Y P W P + F Sbjct: 455 SSEK-ALYMQPAWGPNNRIAVF 475 >gi|311069718|ref|YP_003974641.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus 1942] gi|310870235|gb|ADP33710.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus 1942] Length = 658 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 46/204 (22%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYS-----VDLQSNATERLTNTLFINISASYSPDSSQI 316 P +S +GKRA + Q ++ D Y+ D +S + T N +SPD Q+ Sbjct: 19 PHYSPDGKRAAFVQTQVNKEKDSYTSHIMVYDTESGHSVPWTYGEKKNSEPRWSPDGRQL 78 Query: 317 VFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG----------------- 358 F SDREG QLY++ ++G + ++++ D PVWSP G Sbjct: 79 AFISDREGDAPQLYILSTDGGEARKLT-DIPYGVSQPVWSPDGCSLLLSVNLAASEHVND 137 Query: 359 ---------DLIAFTKFSGEKFAIGVMKKDGSQ-----------ERLLVEDSNLQAPTWS 398 + + + +K G++K +Q ++L ++ P +S Sbjct: 138 KEKAEHDNNEPVEIHSLTYKKDGKGLIKGTYAQIILVSAVTGEIKQLTAHKADHLDPVFS 197 Query: 399 PSGRSLIFSRK-KDGDTGSKLYSI 421 P G+S++F+ D D SK Y + Sbjct: 198 PDGKSIVFTANLTDQDDASKPYDV 221 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 74/149 (49%), Gaps = 10/149 (6%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 EPR+SP+ +++A+ + + D ++Y++ T A +++ + + P +S +G L+S Sbjct: 68 EPRWSPDGRQLAFISDREGDAPQLYILSTDGGEA-RKLTDIPYGVSQPVWSPDGCSLLLS 126 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 V + V+ + A + I+ S +Y D ++ + Q+ ++ + Sbjct: 127 VNLAASE---HVNDKEKAEHDNNEPVEIH-SLTYKKDGKGLI----KGTYAQIILVSAVT 178 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + K+++ K A + DPV+SP G I FT Sbjct: 179 GEIKQLTAHK-ADHLDPVFSPDGKSIVFT 206 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 21/106 (19%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-------------QAPTW 397 DP +SP G AF + K +KD ++V D+ P W Sbjct: 18 DPHYSPDGKRAAFVQTQVNK------EKDSYTSHIMVYDTESGHSVPWTYGEKKNSEPRW 71 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQW 442 SP GR L F ++GD +LY + + G L + P S P W Sbjct: 72 SPDGRQLAFISDREGDA-PQLYILSTDGGEARKLTDIPYGVSQPVW 116 >gi|237722924|ref|ZP_04553405.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447446|gb|EEO53237.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 1119 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ + SY +PVWSP G IAF Sbjct: 28 ARISPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS-------- 416 F + +M DG R L S + P+ ++P G+ + FS GS Sbjct: 82 DRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYIFFSASIQDPVGSALFPTGAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + + GR E ++ TPA Sbjct: 142 TELYKVPVAGGRTEQVLGTPA 162 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G I F+ Sbjct: 104 Y-HSASEIPSAFTPDGKYIFFS 124 >gi|152993347|ref|YP_001359068.1| translocation protein TolB [Sulfurovum sp. NBC37-1] gi|151425208|dbj|BAF72711.1| Tol biopolymer transport system component TolB [Sulfurovum sp. NBC37-1] Length = 412 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 35/254 (13%) Query: 204 RYLTPSRDQILFE------------------PRFSPNQQKVAYATYDDEDILRVYLMDTR 245 RY P R +IL P+++ + QK Y Y L L Sbjct: 155 RYTAPKRSEILLADYTFTYQKVIIRGGLNLFPKWADSAQKSFY--YTSYAGLIPTLNKIN 212 Query: 246 IDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 I K ++ + MI+ S +G + L+++ + DIY + L + + R+T I+ Sbjct: 213 IYTGSKSKVASSEGMIVCSDVSPDGSKMLLTMSPEGQPDIYEMSLFTGSKTRVTKFNGID 272 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAF 363 ++ Y + SQIVF S+R G ++ N + Q+ + + + D G+ I + Sbjct: 273 VNGKYLGNGSQIVFVSNRLGYANIFKKSINSAAVQQVVFHGRNNNAVD----AHGNKIIY 328 Query: 364 TK------FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 F G +F + + +G R L + Q P +S G S+I K++G++ S Sbjct: 329 CSREGNNAFGGNRFNLYLTSANGGSSRPLTTTGSNQFPRFSTDG-SVILYIKQNGNSSSI 387 Query: 418 LYSIDLNGRNETLI 431 Y I+L G +++L+ Sbjct: 388 GY-INL-GSSQSLL 399 >gi|320107875|ref|YP_004183465.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319926396|gb|ADV83471.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 729 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 276 VQKDEAMDIYSVDLQSN---ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 V+ DE +I+ V +Q+ + +R + N S S+SPD I F SDR G +++ Sbjct: 439 VESDENWNIWRVPIQNGHIGSPKRFLASQGHNHSPSFSPDGRTIAFVSDRSGTPEIWFAN 498 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-N 391 +GS ++++ WSP + F I M G + L + Sbjct: 499 EDGSSLRQMTHFGGPWLGTIRWSPDNKAVVFDARPNGNSEIFTMSASGGKPTLFEHEQFE 558 Query: 392 LQAPTWSPSGRSLIFSRKKDG 412 ++ P WS GRS+ F + G Sbjct: 559 VRRPGWSRDGRSVYFDTTRAG 579 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 7/155 (4%) Query: 263 PRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 PRFS +GKR A + A +I+++ ++LT ++ D ++F S+ Sbjct: 338 PRFSQDGKRIAFVRYISHGAGEIFTMAADGTDLKQLTTDHRNVRGVDWASDGWHLIFASN 397 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK---- 377 R G +L + NG + + + D AS +P S G+ +AF + S E + I + Sbjct: 398 RRGSYELREIDRNGGESQPLPSDT-ASASEPAISRIGNWMAFVE-SDENWNIWRVPIQNG 455 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 GS +R L + +P++SP GR++ F + G Sbjct: 456 HIGSPKRFLASQGHNHSPSFSPDGRTIAFVSDRSG 490 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 15/152 (9%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +N + S S +PD +++ + D +Y+ S R++ DK+ P WS Sbjct: 179 FSNEIGQQFSPSIAPDGTRVAYVWDGNADNYDIYIKDLKTSGVVRLTDDKQPD-IHPAWS 237 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLL--VED-----------SNLQAPTWSPSGR 402 P G +AF + S + V G E + + D S Q+PTW+P GR Sbjct: 238 PDGREVAFLRRSPSGTEVFVKSAGGGAEHPVGAIRDTSGLWASENPFSGCQSPTWTPDGR 297 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 L+ + D G+ L + ++ E + +P Sbjct: 298 QLLLTDGLGKDYGAGLVLLSVDSGTEKPLTSP 329 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/263 (23%), Positives = 115/263 (43%), Gaps = 39/263 (14%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 F P +P+ +VAY + D +Y+ D + R+ + + + P +S +G+ Sbjct: 187 FSPSIAPDGTRVAYVWDGNADNYDIYIKDLKTSGV-VRLTDDKQPDIHPAWSPDGREVAF 245 Query: 275 SVQKDEAMDIYSVDLQSNATE-----RLTNTLFIN-------ISASYSPDSSQIVFESDR 322 + +++ A R T+ L+ + S +++PD Q++ +D Sbjct: 246 LRRSPSGTEVFVKSAGGGAEHPVGAIRDTSGLWASENPFSGCQSPTWTPDGRQLLL-TDG 304 Query: 323 EGKE---QLYVMQSNGSDQKRISQDK---EASYFDPVWSPQGDLIAFTKF----SGEKFA 372 GK+ L ++ + +K ++ + E Y P +S G IAF ++ +GE F Sbjct: 305 LGKDYGAGLVLLSVDSGTEKPLTSPRPQDEDCY--PRFSQDGKRIAFVRYISHGAGEIF- 361 Query: 373 IGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETL 430 M DG+ + L D N++ W+ G LIF+ + G +L ID N G ++ L Sbjct: 362 --TMAADGTDLKQLTTDHRNVRGVDWASDGWHLIFASNRRGSY--ELREIDRNGGESQPL 417 Query: 431 INTPAYASDP------QWVGFMD 447 + A AS+P W+ F++ Sbjct: 418 PSDTASASEPAISRIGNWMAFVE 440 >gi|219847845|ref|YP_002462278.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542104|gb|ACL23842.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM 9485] Length = 618 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 21/134 (15%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS------------- 306 + P +S +G+ + +IY D++ +TL+ + Sbjct: 466 VETPTWSPDGRSLFWVTNCEGNFEIYRADVRY----YYIDTLYAGVELVNLLNLTNNAAN 521 Query: 307 ---ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 A SPD QI F SDR+G ++YVM S+GS+ +R++ + A+ P WSP G +AF Sbjct: 522 DRFARVSPDGKQIAFASDRDGNWEIYVMNSDGSNVRRLTNNP-ATDDAPTWSPDGRQLAF 580 Query: 364 TKFSGEKFAIGVMK 377 F I ++ Sbjct: 581 ASDRDGDFEIYILN 594 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 69/180 (38%), Gaps = 63/180 (35%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSN----GSDQKRISQDKEASYFDPVWSPQG-DL 360 +A SPD + +VF S+R G QLY+ + N G Q+ S D + P WSP G L Sbjct: 419 NAMVSPDGNLMVFVSERTGAPQLYLRRLNIPLRGFAQQITSYDPACNVETPTWSPDGRSL 478 Query: 361 IAFTKFSG-----------------------------------EKFA------------- 372 T G ++FA Sbjct: 479 FWVTNCEGNFEIYRADVRYYYIDTLYAGVELVNLLNLTNNAANDRFARVSPDGKQIAFAS 538 Query: 373 -------IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I VM DGS R L + + APTWSP GR L F+ +DGD ++Y +++N Sbjct: 539 DRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDRDGDF--EIYILNVN 596 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 45/92 (48%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK+ + +D +IY ++ + RLTN + + ++SPD Q+ F SDR+ Sbjct: 526 RVSPDGKQIAFASDRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDRD 585 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 G ++Y++ N A P+W+ Sbjct: 586 GDFEIYILNVNDGTVTTQVTQNTAQDRWPLWA 617 >gi|154290642|ref|XP_001545913.1| hypothetical protein BC1G_15641 [Botryotinia fuckeliana B05.10] gi|150847472|gb|EDN22665.1| hypothetical protein BC1G_15641 [Botryotinia fuckeliana B05.10] Length = 674 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 45/214 (21%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD----EDILRVYLMDTRID 247 +L + + DG+N R L + + FSP+ + V + T + DI RV + T ++ Sbjct: 74 TLYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTERNGDGQSDIYRVKVDGTGLE 133 Query: 248 RAPKRIGNFRSMILAPRFSSNG-------KRALISVQKDEAMDIYSVDLQSNATERLTNT 300 S++ P F G A +S Q + +I+ DL + LTNT Sbjct: 134 ----------SLVETPSFEDAGVLSPDGTTLAYVSTQGNFTANIWVKDLTTGVAFNLTNT 183 Query: 301 LFI---------NISASYSPDSSQIVFESDRE----------GKEQ-----LYVMQSNGS 336 + S+SPD I F SDR G E +Y ++ NGS Sbjct: 184 PTTAGDNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGS 243 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D ++ S P WSP G I F + + E Sbjct: 244 DFSQVVTKAGYSLGSPKWSPDGSRIIFYEMTREN 277 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 375 VMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLI 431 + DGS ER L+ +S+ +SP G+ +IF+ +++GD S +Y + ++G E+L+ Sbjct: 77 IANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTERNGDGQSDIYRVKVDGTGLESLV 136 Query: 432 NTPAY 436 TP++ Sbjct: 137 ETPSF 141 >gi|319650056|ref|ZP_08004205.1| YuxL protein [Bacillus sp. 2_A_57_CT2] gi|317398237|gb|EFV78926.1| YuxL protein [Bacillus sp. 2_A_57_CT2] Length = 661 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 89/231 (38%), Gaps = 52/231 (22%) Query: 263 PRFSSNGKR-ALISVQKDEAMDIYSVDL------QSNATERLTNTLFINISASYSPDSSQ 315 P+ S NG A + + + + YS ++ + N + T N S +SPD Sbjct: 21 PQLSLNGNDLAFVETRMLDEENTYSSNIFYLNTIKGNMPVQWTYGKHRNHSPRWSPDGDS 80 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----------T 364 I F SDR+GK Q+YVM G + ++++ + PVWSP G I F T Sbjct: 81 IAFVSDRDGKSQIYVMSKAGGEARQLTHCANGAS-KPVWSPDGKKIVFNLSVKPGEDAET 139 Query: 365 KFSGEK-------FAIGVMK---------------------KDGSQERLLVEDSNLQAPT 396 K + EK I MK + G E+L + + Q Sbjct: 140 KENQEKQTDRPLPLEIEKMKHKSDAQGFWSGRYSQVALIDIETGGMEQLTSGEHDYQLQD 199 Query: 397 WSPSGRSLI----FSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 WSP G+ + S KD S +Y I L ++ + + N Y W Sbjct: 200 WSPDGKWIAVTADLSEDKDFSFLSDVYIIHLETKDMKRITNGKGYFGSATW 250 >gi|262197963|ref|YP_003269172.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262081310|gb|ACY17279.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1623 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 129/305 (42%), Gaps = 31/305 (10%) Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-----VVSGIIKNSLCVMDRDGAN 202 PA WR++A I Q + +S + F + S V + ++ V DG Sbjct: 952 PAPWRELAQGA---IQQQVADVVLRHDSSVWFAAYSPDGARVATATFDGTVRVWRADGTG 1008 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + + FSP+ +VA A+YD +RV+ D P + + Sbjct: 1009 EPLVLGKHENRVLSLTFSPDGARVASASYD--GTVRVW--DADGASPPTILSGHEMALYT 1064 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 FS +G R +++ ++ I++ D S T L SA +SPD ++IV S+ Sbjct: 1065 VDFSPDGAR-IVTAAREGVARIWNAD-GSGETVVLRGHEGPVRSARFSPDGARIVTTSE- 1121 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + + V ++GS + R+ + A+ + +SP G +A G + V D Sbjct: 1122 --DQTVRVWNADGSGEPRVLRGHTATVYSARFSPDGRRLASASLDG---SARVWDLDHPD 1176 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL------INTP 434 E ++ ++ A +SP GR ++ + D ++++ ++ G + TL +N+ Sbjct: 1177 ESVIFNGHQGDVYAAVFSPDGRRVVTA---SADGTARVWDLERPGHSTTLRGHRDGVNSA 1233 Query: 435 AYASD 439 ++ D Sbjct: 1234 DFSPD 1238 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 112/274 (40%), Gaps = 22/274 (8%) Query: 167 TGEK---GDFNSRILFVSES-----VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 TGE G +R+L ++ S V S ++ V D DGA+ + + L+ Sbjct: 1007 TGEPLVLGKHENRVLSLTFSPDGARVASASYDGTVRVWDADGASPPTILSGHEMALYTVD 1066 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ ++ A E + R++ D + R + + RFS +G R +++ + Sbjct: 1067 FSPDGARIVTAA--REGVARIWNADGSGETVVLR--GHEGPVRSARFSPDGAR-IVTTSE 1121 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D+ + +++ D S L SA +SPD ++ + +G +++ + + D+ Sbjct: 1122 DQTVRVWNAD-GSGEPRVLRGHTATVYSARFSPDGRRLA-SASLDGSARVWDL--DHPDE 1177 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 I + + V+SP G + G + +++ G L + + +S Sbjct: 1178 SVIFNGHQGDVYAAVFSPDGRRVVTASADGTA-RVWDLERPGHSTTLRGHRDGVNSADFS 1236 Query: 399 PSG-RSLIFSRKKDG---DTGSKLYSIDLNGRNE 428 P G R L S + + Y++ L G + Sbjct: 1237 PDGARILTASEDRTARIWNVAELAYTVHLRGHEQ 1270 >gi|163845964|ref|YP_001634008.1| peptidase S41 [Chloroflexus aurantiacus J-10-fl] gi|222523689|ref|YP_002568159.1| peptidase S41 [Chloroflexus sp. Y-400-fl] gi|163667253|gb|ABY33619.1| peptidase S41 [Chloroflexus aurantiacus J-10-fl] gi|222447568|gb|ACM51834.1| peptidase S41 [Chloroflexus sp. Y-400-fl] Length = 1062 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 74/336 (22%), Positives = 132/336 (39%), Gaps = 58/336 (17%) Query: 151 WRKIAHTIS---------DDIYQSITGEKGDFNSRILFVSE---SVVSGIIKNSLCVMDR 198 WR+ H S D Y+++ G F R+++ + + + + V D Sbjct: 160 WRRGPHPFSSNEIWLGPTDPDYRALCQIAGPFGQRLVYAGKLGWPLWAPDGQGLYIVCDS 219 Query: 199 DG-----------ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV-------- 239 DG R +T RD L P + + V D + R+ Sbjct: 220 DGNENLWYLPLGEGEARQITHFRDGRLLFPAIA-RRNNVIVCERGDGQLWRIDPISGESV 278 Query: 240 -YLMDTRID--RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV----DLQSN 292 + RID R P R+ + S R S +GK+ I + D D DL+ Sbjct: 279 PVPIRVRIDSKRTPVRVERWTSGFSEVRLSPDGKKLAIVARGDVFADFADKETDRDLRQG 338 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 R+TNT S +++PDS ++++ SDR G+ +L+ + ++++++D P Sbjct: 339 PAFRVTNTPAREWSIAWAPDSQRLIYLSDRYGEVELFAYDFSSGQEQQLTRDGRPKML-P 397 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKK 410 +P G IA+ + ++ I V++ R + + A WSP R L F + Sbjct: 398 RIAPDGKSIAYIR---DQRIIEVIEVTDPSPREVCQARFAVAADLCWSPDSRYLAFIAQD 454 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 D +L+S + PA +P+ + F+ Sbjct: 455 D-----RLFS--------NVYIVPAAGGEPRQITFL 477 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ V ++ ERLT + +SPD +I+F + R+G LYV+ G ++ Sbjct: 25 AGDVWLVSIEGGVAERLTAHPASHYGPRFSPDGQRILFSAGRDGSGDLYVLDLAGGPPRQ 84 Query: 341 IS-QDKEASYFDPVWSPQGDLIAFT 364 I+ QD++ + D W+ GD + FT Sbjct: 85 ITFQDEQCTPED--WANDGDAVFFT 107 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 27/222 (12%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +L +P P+ + +A+ D V+L+ A +R+ + PRFS +G+R Sbjct: 7 LLRQPALDPDGRLLAFIAAGD-----VWLVSIEGGVA-ERLTAHPASHYGPRFSPDGQRI 60 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVM 331 L S +D + D+Y +DL ++T ++ D + F + E +Y + Sbjct: 61 LFSAGRDGSGDLYVLDLAGGPPRQITFQDEQCTPEDWANDGDAVFFTTAIEQMGSAIYRV 120 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------------FSGEKFAIGVMKKD 379 +++G I + SP G +AF FS + +G D Sbjct: 121 KTSGGTPAPIYLEPYEQLGQVAVSPDGTRLAFVNIRERWWRRGPHPFSSNEIWLGPTDPD 180 Query: 380 --------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 G + LV L P W+P G+ L DG+ Sbjct: 181 YRALCQIAGPFGQRLVYAGKLGWPLWAPDGQGLYIVCDSDGN 222 >gi|148554693|ref|YP_001262275.1| amidohydrolase [Sphingomonas wittichii RW1] gi|148499883|gb|ABQ68137.1| amidohydrolase [Sphingomonas wittichii RW1] Length = 1010 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 APK + IL P S +GK + D ++ + + RLTN F++I + Sbjct: 320 APKPVKG----ILHPVVSPDGKYVAFTALSD----LWLLKIGDPKPVRLTNDPFVDIDPA 371 Query: 309 YSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD S++ + SDR G LYV ++R+++ E S PV+SP G IA T Sbjct: 372 WSPDGSRLAYTSDRRGVGTMDLYVRDMASGREERLTETTE-SVAAPVFSPDGKSIALTML 430 Query: 367 SGEKF 371 + + + Sbjct: 431 ASDDW 435 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N +A+ SPD+++I D +G +L ++ + G + S P WSP G LIAF Sbjct: 43 NFTAAMSPDATRIAI--DLQG--ELRILPAKGGKAVVVPGLSGESRL-PSWSPDGKLIAF 97 Query: 364 TKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGD 413 + G + I +K DGS R L ++ + P WS GRS++F+ + G+ Sbjct: 98 QYYLGGYWHIFTVKPDGSDLRQLSFGAADDREPVWSADGRSILFASDRAGN 148 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD + F + L++++ R++ D DP WSP G +A+T + Sbjct: 333 SPDGKYVAFTA----LSDLWLLKIGDPKPVRLTNDPFVD-IDPAWSPDGSRLAYTS---D 384 Query: 370 KFAIGVMK------KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + +G M G +ERL ++ AP +SP G+S+ + Sbjct: 385 RRGVGTMDLYVRDMASGREERLTETTESVAAPVFSPDGKSIALT 428 >gi|57237119|ref|YP_178131.1| translocation protein TolB [Campylobacter jejuni RM1221] gi|205356487|ref|ZP_03223251.1| periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|67461888|sp|Q5HX54|TOLB_CAMJR RecName: Full=Protein tolB; Flags: Precursor gi|57165923|gb|AAW34702.1| tolB protein, putative [Campylobacter jejuni RM1221] gi|205345674|gb|EDZ32313.1| periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315057552|gb|ADT71881.1| tolB protein precursor [Campylobacter jejuni subsp. jejuni S3] Length = 402 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVSVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|86151349|ref|ZP_01069564.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315123714|ref|YP_004065718.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841696|gb|EAQ58943.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315017436|gb|ADT65529.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 402 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVSVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|78049130|ref|YP_365305.1| putative regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037560|emb|CAJ25305.1| putative regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 821 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 13/225 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ +VAYA+ + L+ T + P+ + + P +S +G++ Sbjct: 271 LTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQI 330 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + + E + +S S+SPD +VF S + G + Sbjct: 331 AFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAAR 390 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + + +A FD P +SP G+ I F + + + G ERL Sbjct: 391 MRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERL 450 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++++++ +W P G LIF R+ D + ++LY +DL R+ +L Sbjct: 451 THDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL--RDHSL 491 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 7/143 (4%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ S SPD +++ + S DR G L N + + S P WSP G Sbjct: 270 DLTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQ 329 Query: 361 IAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IAF++ S S+E + + +++ + +WSP GR+L+F + Sbjct: 330 IAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAA 389 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 ++ +DL ++ PA A D Sbjct: 390 RMRRLDLATGQWQTLDYPAQAGD 412 >gi|262194671|ref|YP_003265880.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078018|gb|ACY13987.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1583 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 109/231 (47%), Gaps = 15/231 (6%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS ++ V + DG+ + ++ + RFSP+ +++ A++D +R++ D Sbjct: 1015 IVSASWDQTVRVWNADGSGRPIVLRGHEKAVMSARFSPDGRRIVSASWDRS--VRIWNAD 1072 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 P + + A FS +G R ++S D+++ ++ D + L +T + Sbjct: 1073 G--SGQPIVLRGHEDAVTAAVFSPDGTR-VVSASHDDSVRVWRADGSGKPSVLLGHTDDV 1129 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++AS+SPD+ +IV S + L V ++G+ + + + + F +SP G I Sbjct: 1130 -MAASFSPDNRRIVSASK---DQSLRVWPADGTGEPLLLRGHQDEVFSACFSPDGQRIVS 1185 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDG 412 F ++ + DG+ +++ ++ + +SP GR ++ S KDG Sbjct: 1186 ASFDN---SVRIWNADGAGVPVVLRGHRDDVLSARFSPDGRDIV-SASKDG 1232 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 35/273 (12%) Query: 182 ESVVSGIIKNSLCVMDRDGANIR-YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + +VS NS+ + + DGA + L RD +L RFSP+ + + A+ D +RV+ Sbjct: 1181 QRIVSASFDNSVRIWNADGAGVPVVLRGHRDDVL-SARFSPDGRDIVSASKD--GTVRVW 1237 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT------ 294 D + R + + FS +G R ++S D + I++ D +A Sbjct: 1238 GAH---DDNTAVLRGHRGRLYSATFSPDGAR-VVSASHDTSARIWNADGTGHAIVLNGHD 1293 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 E +T+ AS+SPD ++V S + + + ++G+ I + + V+ Sbjct: 1294 EGVTH-------ASFSPDGQRVVTAS---FDKSVRIWNADGTGDPMILRGHDDWVTSAVF 1343 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G +A F +I + DGS + LL + + + ++SP GR + Sbjct: 1344 SPDGQRVASASFDK---SIRIWHADGSGDPVVLLGHTAQILSVSFSPDGRRVA---SASW 1397 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 D ++++ D G ET I + +WV F Sbjct: 1398 DKTVRIWNAD--GSGETTI-LGEHEDTVRWVSF 1427 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 15/223 (6%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS SL V DG L +F FSP+ Q++ A++D+ +R++ D Sbjct: 1141 IVSASKDQSLRVWPADGTGEPLLLRGHQDEVFSACFSPDGQRIVSASFDNS--VRIWNAD 1198 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 P + R +L+ RFS +G R ++S KD + ++ + A R Sbjct: 1199 GA--GVPVVLRGHRDDVLSARFSPDG-RDIVSASKDGTVRVWGAHDDNTAVLRGHRGRL- 1254 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SA++SPD +++V S + ++G+ + + +SP G + Sbjct: 1255 -YSATFSPDGARVVSASHDTSAR---IWNADGTGHAIVLNGHDEGVTHASFSPDGQRVVT 1310 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F ++ + DG+ + +++ D + + +SP G+ + Sbjct: 1311 ASFDK---SVRIWNADGTGDPMILRGHDDWVTSAVFSPDGQRV 1350 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 118/289 (40%), Gaps = 36/289 (12%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 EK ++R +VS S+ + + DG+ + + + FSP+ +V Sbjct: 1042 EKAVMSARFSPDGRRIVSASWDRSVRIWNADGSGQPIVLRGHEDAVTAAVFSPDGTRVVS 1101 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 A++DD +RV+ D P + ++A FS + +R ++S KD+++ ++ D Sbjct: 1102 ASHDDS--VRVWRADG--SGKPSVLLGHTDDVMAASFSPDNRR-IVSASKDQSLRVWPAD 1156 Query: 289 -------LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 L+ + E SA +SPD +IV S + + ++G+ + Sbjct: 1157 GTGEPLLLRGHQDEVF--------SACFSPDGQRIVSAS---FDNSVRIWNADGAGVPVV 1205 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 + +SP G I G G D + L L + T+SP G Sbjct: 1206 LRGHRDDVLSARFSPDGRDIVSASKDGTVRVWGA--HDDNTAVLRGHRGRLYSATFSPDG 1263 Query: 402 RSLIFSRKKDGDTGSKLYSID-------LNGRNETLINTPAYASDPQWV 443 ++ + DT +++++ D LNG +E + + +++ D Q V Sbjct: 1264 ARVVSASH---DTSARIWNADGTGHAIVLNGHDEGVTHA-SFSPDGQRV 1308 >gi|255009425|ref|ZP_05281551.1| putative exported tricorn protease [Bacteroides fragilis 3_1_12] gi|313147185|ref|ZP_07809378.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135952|gb|EFR53312.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1077 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 35/208 (16%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NGK + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGKEIVFSY----AGDLYKVPAAGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M + G + R+ S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPATGGEPLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSK 417 SG+ F V K+ G E + + + ++SP G+ L ++R G Sbjct: 145 SGKLFT--VDKEGGLSEAIPLPEGGFC--SYSPDGKQLAYNRVMREFRTWKYYKGGMADD 200 Query: 418 LYSIDLNGRN-ETLINTPAYASDPQWVG 444 ++ + N + E + N A P W+G Sbjct: 201 IWVYNPNSKTVENITNNVAQDIFPMWIG 228 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 85/391 (21%), Positives = 163/391 (41%), Gaps = 58/391 (14%) Query: 47 PVSIAFTKFVSIDELGGKVSE-----VVSKDLQRSDVFNLISQDSFKQKITNPD------ 95 P+ + +T S D+LG ++ + D QR N IS D F K+ D Sbjct: 100 PLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRIS-DGFSGKLFTVDKEGGLS 158 Query: 96 -SIP----RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 +IP F ++ G Q L RV++E FR W + + + +P S Sbjct: 159 EAIPLPEGGFCSYSPDGKQ-LAYNRVMRE--------FRTWKYY-KGGMADDIWVYNPNS 208 Query: 151 --WRKIAHTISDDIYQSITGEKGDFNSRILFVSES-------VVSGIIKNSLCVMDRDGA 201 I + ++ DI+ G++ I F+S+ V + K + V D Sbjct: 209 KTVENITNNVAQDIFPMWIGDE------IFFLSDRDRIMNIFVYNTKTKQTAKVTDFTEY 262 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 ++++ + S + I+FE K+ AT E + D R + G + + Sbjct: 263 DVKFPSASGNTIVFE--NGGYIYKMDAATRKAEKVNIALASDNIYARTDLKDG--ANYVT 318 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFES 320 A S +G R +++ + + ++++ ++ T+ +T + + A +SPD +QI + S Sbjct: 319 AASLSPDGARMVVTSRGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAYIS 374 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 D G+ +LY+ + G + +++ + D WSP I + K + ++ Sbjct: 375 DATGETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSKKIVYMD---RKNRVNLLDVAS 431 Query: 381 SQERLLVEDSNLQAP---TWSPSGRSLIFSR 408 + LL++D + P T+SP L ++R Sbjct: 432 GKVSLLLQDP-VGVPGGVTFSPDSEWLTYTR 461 >gi|256379057|ref|YP_003102717.1| amidohydrolase [Actinosynnema mirum DSM 43827] gi|255923360|gb|ACU38871.1| amidohydrolase [Actinosynnema mirum DSM 43827] Length = 1031 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 30/206 (14%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I +P S NG+ ++ + A+ + +D + A L + + PD S +V+ Sbjct: 324 IASPVLSPNGRE--VAFRALGALWLLPLDGEPRA---LVDDGSFASDPDWRPDGSALVYT 378 Query: 320 SDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G L+ + G+D + D + P +P G+ IAF G + + Sbjct: 379 SDRTGTPALWRHDLATGADTRLT--DLPGAQLTPRIAPDGERIAFQDADGATWVL----S 432 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFS-------RKKDG---------DTGSKLYSID 422 DG ++L PTWSP GR+L + R ++G DTG Y+ Sbjct: 433 DGVATQVLPALFQPGRPTWSPDGRTLALAAVKPLSRRYREGTNQILTVALDTGEVRYAEP 492 Query: 423 LNGRNETLI--NTPAYASDPQWVGFM 446 L G++ + + P ++ D +W+ F+ Sbjct: 493 LPGKSLSTRGDDGPVWSPDGRWLAFV 518 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 S A R T T NI+A+ SPD I + +++++ ++G + ++ D E Sbjct: 40 SGALRRFTATEGTNITAALSPDGRTIAIDL----YTRIWLLPASGGRARPLT-DPEQDAT 94 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 P +SP G + F + + + + DG R ++ + P +SP GR++ +S Sbjct: 95 RPHFSPDGRSLVFQSYRDGNYHLWTIGVDGRGLRRRTSGPTDHREPRFSPDGRAIAYSGD 154 Query: 410 KDGDTGSKLYSIDL 423 D G L+ +DL Sbjct: 155 AGAD-GYHLWLLDL 167 Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 PV SP G +AF A+ ++ DG + R LV+D + + P W P G +L+++ + Sbjct: 327 PVLSPNGREVAFRALG----ALWLLPLDG-EPRALVDDGSFASDPDWRPDGSALVYTSDR 381 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGFMD 447 G L+ DL +T + TP A D + + F D Sbjct: 382 TGT--PALWRHDLATGADTRLTDLPGAQLTPRIAPDGERIAFQD 423 >gi|157414425|ref|YP_001481681.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni 81116] gi|283955556|ref|ZP_06373051.1| TolB protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|157385389|gb|ABV51704.1| TolB protein, putative [Campylobacter jejuni subsp. jejuni 81116] gi|283793017|gb|EFC31791.1| TolB protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|307747069|gb|ADN90339.1| Protein tolB [Campylobacter jejuni subsp. jejuni M1] gi|315931506|gb|EFV10473.1| tol-Pal system beta propeller repeat protein TolB [Campylobacter jejuni subsp. jejuni 327] Length = 402 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVSVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|197122507|ref|YP_002134458.1| hypothetical protein AnaeK_2102 [Anaeromyxobacter sp. K] gi|196172356|gb|ACG73329.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. K] Length = 1078 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + + P S +G+R +Q+ D+ + A R+T+ ++ +++PD ++ Sbjct: 500 AQVYGPAPSPDGRRIAFELQEGGRRDV--ALWEDGAVRRVTDDDALDTGPAWTPDGRYLL 557 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G LY ++ ++++ + E+ F P SP G IAF F E + + + Sbjct: 558 FASDRGGVYDLYAWEAATGALRQVT-NVESGAFQPAVSPDGRTIAFVTFGREGYDVATLP 616 Query: 378 KD 379 D Sbjct: 617 FD 618 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 93/237 (39%), Gaps = 59/237 (24%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR------SMILAPRFSSNG- 269 PR+SP+ +AY D +DR P G +R + LA +NG Sbjct: 346 PRWSPDGSFLAYQKRD-------------LDRRP---GTYRVTPGGADLGLALTVDANGA 389 Query: 270 ------KRALISVQKDEAM-----DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + A++++ + + D+++VDL A RLT+ A P +V+ Sbjct: 390 LSMASPREAVVAIGEVWRLHRTYDDLWAVDLARGARRRLTDGERAGDPAVV-PGGGAVVY 448 Query: 319 ESDREGKEQLYV---------MQSNGSDQKRISQ--------------DKEASYFDPVWS 355 G V + ++ + ++R ++ A + P S Sbjct: 449 VRHEPGGRMALVRRTLPPAPMVPADVTIRERRAELAVPPPAQVEVLFARPGAQVYGPAPS 508 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 P G IAF G + + + +DG+ R+ +D+ P W+P GR L+F+ + G Sbjct: 509 PDGRRIAFELQEGGRRDV-ALWEDGAVRRVTDDDALDTGPAWTPDGRYLLFASDRGG 564 >gi|320107933|ref|YP_004183523.1| transcriptional regulator CadC [Terriglobus saanensis SP1PR4] gi|319926454|gb|ADV83529.1| transcriptional regulator, CadC [Terriglobus saanensis SP1PR4] Length = 739 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQK 339 VD+QS+ + S+ D+ ++ F DR+ +L+ + +GS++ Sbjct: 456 GVDVQSDVEIYRPQSKDFGPVQSFLRDAHRLEFSRDRQWVAWADTNGRLWRARIDGSEKL 515 Query: 340 RISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTW 397 +++ D F WSP G+ +A + +G+ + I ++K DGS ER+L E N PTW Sbjct: 516 QLTPDA-IQVFLVRWSPDGNRLALMGRETGKAWQIYLVKADGSALERVLQESRNAGDPTW 574 Query: 398 SPSGRSLIFSRKKD 411 SP G+SL F R D Sbjct: 575 SPDGKSLAFGRVPD 588 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 40/164 (24%) Query: 309 YSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD +++ GK Q+Y+++++GS +R+ Q+ + DP WSP G +AF + Sbjct: 529 WSPDGNRLALMGRETGKAWQIYLVKADGSALERVLQESRNAG-DPTWSPDGKSLAFGRVP 587 Query: 368 G------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 E + ++ D + L NL +P WSP GR + +I Sbjct: 588 DLMGKEEEARMVQIVDLDTRAVQTLPGSENLFSPRWSPDGR--------------HIAAI 633 Query: 422 DLNGRNETLINTP-------AYAS--DPQWV---------GFMD 447 L+ R L +T AY S DP W GFMD Sbjct: 634 SLDQRRLMLYDTATHQWRQLAYGSFADPVWTSDNQAIIAHGFMD 677 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 12/150 (8%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKR-ALISV 276 FS ++Q VA+A + L RID + K ++ + R+S +G R AL+ Sbjct: 488 FSRDRQWVAWADTNGR------LWRARIDGSEKLQLTPDAIQVFLVRWSPDGNRLALMGR 541 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREGKEQLYVMQSN 334 + +A IY V +A ER+ ++SPD + F D GKE+ M Sbjct: 542 ETGKAWQIYLVKADGSALERVLQESRNAGDPTWSPDGKSLAFGRVPDLMGKEEEARMVQI 601 Query: 335 GSDQKRISQDKEAS--YFDPVWSPQGDLIA 362 R Q S F P WSP G IA Sbjct: 602 VDLDTRAVQTLPGSENLFSPRWSPDGRHIA 631 >gi|148907920|gb|ABR17080.1| unknown [Picea sitchensis] Length = 714 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 26/217 (11%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-------IGNFRSMILAPRFSSNG 269 P FSP+ +AY + + VY+M R+D + +R G ++S G Sbjct: 420 PSFSPDGSLIAYIP--NIEYSGVYVM--RLDGSGRRKIFSGAAFGTAWDWKRGVVYTSAG 475 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI----NISASYSPDSSQIVFESDREGK 325 + + IY+ D + + ++ N S SPD +VF S R G Sbjct: 476 PGFETETTTVDIVAIYNADREGTSESEISYKTLTKEGNNAFPSPSPDGKFVVFRSGRTGH 535 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAF-----TKFSGEKFAIGVMKK 378 + LY+M + ++ + Q E + D + WSP G+ IAF + SG FA+ + Sbjct: 536 KNLYIMDAEEGEEGGLWQLTEGPWTDTMCNWSPDGEWIAFASDRDSPGSG-GFAMYFIHP 594 Query: 379 DGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDG 412 +G+ ++ S + P +SP +SL+F+ G Sbjct: 595 NGTGLHRVLNSSTAGRVNHPWFSPDSKSLVFTSDYAG 631 >gi|121613592|ref|YP_999836.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni 81-176] gi|167004807|ref|ZP_02270565.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni 81-176] gi|87250020|gb|EAQ72978.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 402 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVSVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|220918187|ref|YP_002493491.1| WD40 domain protein beta Propeller [Anaeromyxobacter dehalogenans 2CP-1] gi|219956041|gb|ACL66425.1| WD40 domain protein beta Propeller [Anaeromyxobacter dehalogenans 2CP-1] Length = 704 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 11/178 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP +G+ ++ + VD +T+ L ++ + ++ PD I + Sbjct: 497 APAVRRDGRTIAFWTREGGRTRLRVVDADGTGGRVVTDALQLSGAPAWMPDGRSIAVGAI 556 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG 380 EG +L+ + +G + + + A DP WSP GDL+AFT G F + + DG Sbjct: 557 VEGAPRLFRVPLDGGEPAALVAEPSA---DPAWSPAGDLLAFTGADVGTTFPLRAVNADG 613 Query: 381 SQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDL-NGRNETLINTP 434 S R+ L + + P GRS+ R G+ K L ++DL +G + L+ P Sbjct: 614 SAHRMPPLTLTRGARHVAFLPDGRSIAVLR---GEIRRKHLAAVDLASGASRRLVVLP 668 >gi|309792445|ref|ZP_07686910.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] gi|308225517|gb|EFO79280.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] Length = 627 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 64/207 (30%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 L N N +ASYSPD ++IVF +DR G ++L++M + +++ + P WSP Sbjct: 424 LPNNTANNYNASYSPDGTKIVFVTDRWGGQELFIMTPTANSPTQLT-GQGCINESPTWSP 482 Query: 357 QGDLIAFT-----------------------------------------KFS-----GEK 370 G + +T +F G+ Sbjct: 483 NGRHLYWTSNCDGDFDIYRGEIAYNYEGTWSVDARLVNVVNLTNNNVDDRFPRVSPDGKT 542 Query: 371 FAIGVMKKDGSQE-------------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 A G +DG+ E RL ++ +PTWS G L F+ +DGD + Sbjct: 543 VAFG-SNRDGNWEIYTMSSASGDTLRRLTSNNATDDSPTWSADGSKLAFASDRDGDF--E 599 Query: 418 LYSIDLNGRNETLI-NTPAYASDPQWV 443 +Y++ L+G N T I N A P W Sbjct: 600 IYTMTLDGNNTTQITNNSAQDRWPLWA 626 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 14/188 (7%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + +SP+ K+ + T D +++M T +P ++ + +P +S NG+ Sbjct: 432 YNASYSPDGTKIVFVT-DRWGGQELFIM-TPTANSPTQLTGQGCINESPTWSPNGRHLYW 489 Query: 275 SVQKDEAMDIY------------SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 + D DIY SVD + LTN + SPD + F S+R Sbjct: 490 TSNCDGDFDIYRGEIAYNYEGTWSVDARLVNVVNLTNNNVDDRFPRVSPDGKTVAFGSNR 549 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +G ++Y M S D R A+ P WS G +AF F I M DG+ Sbjct: 550 DGNWEIYTMSSASGDTLRRLTSNNATDDSPTWSADGSKLAFASDRDGDFEIYTMTLDGNN 609 Query: 383 ERLLVEDS 390 + +S Sbjct: 610 TTQITNNS 617 >gi|255548307|ref|XP_002515210.1| conserved hypothetical protein [Ricinus communis] gi|223545690|gb|EEF47194.1| conserved hypothetical protein [Ricinus communis] Length = 618 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFD--PVWSPQGDL 360 N + SPD +VF S R G + LY+M + G + I E + D P WSP+GDL Sbjct: 390 NAFPACSPDGKYLVFRSGRSGHKNLYIMDAVEGEFKGDIRPLTEGACIDTMPCWSPKGDL 449 Query: 361 IAFTKF-----SGEKFAIGVMKKDGSQER 384 IAF+ F+I V+K DGS R Sbjct: 450 IAFSSNRHKPEHANPFSIYVIKPDGSGLR 478 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 30/138 (21%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFTK 365 ASYSPDS I F + + L++++SNGS + + S+D+ A Y WSP + +T Sbjct: 289 ASYSPDSDYIAFNAGL--SQGLHIVRSNGSKRWTLFSRDRTAFYTS--WSPTEKNVIYTT 344 Query: 366 FSGEKFA-------IGVMKKDGSQ------------ERLLVEDSNLQA-PTWSPSGRSLI 405 G FA I + D S + L EDS A P SP G+ L+ Sbjct: 345 L-GPVFAHVNRTVQIARVTFDPSDLKPDRNEIPCDVKMLTGEDSGNNAFPACSPDGKYLV 403 Query: 406 FSRKKDGDTGSK-LYSID 422 F + G +G K LY +D Sbjct: 404 F---RSGRSGHKNLYIMD 418 >gi|257067641|ref|YP_003153896.1| periplasmic component of the Tol biopolymer transport system [Brachybacterium faecium DSM 4810] gi|256558459|gb|ACU84306.1| periplasmic component of the Tol biopolymer transport system [Brachybacterium faecium DSM 4810] Length = 408 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 22/156 (14%) Query: 272 ALISVQKDE-----AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR---- 322 A I VQ+ E +++V A LT F + A YSPD + I F S+R Sbjct: 247 AYIGVQRLEDGTWLPPKVFTVPSSGGAPTPLTEDEFPDDGAEYSPDGAWIYFNSERARTV 306 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--------IG 374 G QL+ M+ +GS ++++ D+ ++F P SP G +A+ F + Sbjct: 307 PGHAQLFRMRPDGSGVEQLTDDERVNWF-PHLSPDGRRVAYVSFPPGTLGHPADRDVILR 365 Query: 375 VMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 + DG+ R LV + +W+P R L + Sbjct: 366 LCAPDGTGIRDLVRLHGGQGTMNVNSWAPDSRRLAY 401 >gi|148554692|ref|YP_001262274.1| amidohydrolase [Sphingomonas wittichii RW1] gi|148499882|gb|ABQ68136.1| amidohydrolase [Sphingomonas wittichii RW1] Length = 1014 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +L+V+ + G I+ + + + PVWSP G IAF ++ E + I V++ DGS+ +++ Sbjct: 58 RLWVLPATGGKATPITPVMDEARY-PVWSPDGRWIAFQYYTDENWHIAVVRPDGSELKVV 116 Query: 387 VEDS-NLQAPTWSPSGRSLIFS 407 + + P+W P G++++FS Sbjct: 117 TRGPYDDREPSWRPDGKAILFS 138 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 2/139 (1%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +G+ DE I V + + +T + + S+ PD I+F SDR Sbjct: 82 PVWSPDGRWIAFQYYTDENWHIAVVRPDGSELKVVTRGPYDDREPSWRPDGKAILFSSDR 141 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 L+ + + Q ++ +A + P SP G A+ + +G ++ ++++ G Sbjct: 142 TRSLDLWQVTLDDGVQTSVTS-GDADDYHPAVSPDGGRTAYVQGTGRTTSL-IVEEAGKA 199 Query: 383 ERLLVEDSNLQAPTWSPSG 401 L+ ++ WSP G Sbjct: 200 RTLVSGKLSISRLHWSPDG 218 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 22/174 (12%) Query: 260 ILAPRFSSNGKR---ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + P+ + KR A +VQ +DL S + L + SPD + Sbjct: 279 VWTPQGDTVAKRPFTAAFTVQDAPVYRKREIDLTSTGDRPVLGIL----RPTTSPDGRHV 334 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F + L+++ +++ D DP WS G +A+ ++ G M Sbjct: 335 AFTA----MGNLWMLTVGDPKPVQLTHDHFLD-VDPTWSRDGQWLAYVS---DRRGTGTM 386 Query: 377 K------KDGSQERLLVEDSNLQAPTWSPSGRSL-IFSRKKDGDTGSKLYSIDL 423 G++ RL + +L P++SP G+S+ +F R G+ LY +D+ Sbjct: 387 DLYLRNVATGAERRLTQTEEDLMQPSFSPDGKSVAVFMRNSADWHGATLYLVDV 440 >gi|325280803|ref|YP_004253345.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] gi|324312612|gb|ADY33165.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] Length = 1110 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 19/179 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+R+TNT S +SPD +V+ +R G +YV + D K + Sbjct: 337 DVYVANAEYGTTKRITNTATQERSVEFSPDGRSLVYAGERNGHWNIYVARIKDKDDKSFA 396 Query: 343 QDKEA----------SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-----SQERLLV 387 KE + F P +SP G IA+ + E I + K ++ Sbjct: 397 YAKEIEEEQITKGTNACFQPSFSPDGKEIAYLENRTEIKVINLKSKKSRTVLPAKYNYSY 456 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASDPQWV 443 +D + Q WSP GR ++ + G L D +G L N+ +P+W+ Sbjct: 457 QDGD-QWYQWSPDGRWILAKYFEHGGWQHNDIALVKADGSGEIHNLTNSGYSDQNPKWM 514 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 12/158 (7%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P SP+ + +A+ D ++L+ + RA ++ + P +S +GK + Sbjct: 31 PAISPDGKTIAFCYKGD-----IFLVSSEGGRA-TQLTTHPAYDSRPVWSPDGKTIAFTS 84 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +DE +++Y+V + RLT I ++PD +I++ S+ + S G Sbjct: 85 ARDEGLNLYTVPVSGGTPTRLTYYSGSEIPVCFTPDGKEILYRSNVMPDAEYGQFPSGGQ 144 Query: 337 ------DQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 D R Q FD ++ +GD I + + G Sbjct: 145 VYKISVDGGRPEQFLTFDAFDINFNKKGDKIIYHDYKG 182 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 19/149 (12%) Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSP 356 N L++ A SPD I F K ++++ S G R +Q +D PVWSP Sbjct: 24 NPLWMRYPA-ISPDGKTIAFCY----KGDIFLVSSEGG---RATQLTTHPAYDSRPVWSP 75 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD-- 413 G IAFT E + + G L S + P ++P G+ +++ D Sbjct: 76 DGKTIAFTSARDEGLNLYTVPVSGGTPTRLTYYSGSEIPVCFTPDGKEILYRSNVMPDAE 135 Query: 414 -----TGSKLYSIDLN-GRNETLINTPAY 436 +G ++Y I ++ GR E + A+ Sbjct: 136 YGQFPSGGQVYKISVDGGRPEQFLTFDAF 164 >gi|291337042|gb|ADD96563.1| hypothetical protein [uncultured organism MedDCM-OCT-S11-C346] Length = 116 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 1/109 (0%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + P +S +G+ L + E D+Y + L++ + L++ +N A+ SPD +I Sbjct: 1 MLPAWSRDGQSLLFTSYLRENPDLYRLHLKTRKLDWLSHKRGLNTGAAVSPDGKKIALTL 60 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +G ++Y+M +G + R++ D P WSP G IA + + E Sbjct: 61 SIDGNTEIYLMDPDGKNLTRLT-DSWGQDISPTWSPDGKRIALSAHALE 108 Score = 39.7 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 217 PRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +S + Q + + +Y ++ D+ R++L ++D + R + S +GK+ + Sbjct: 3 PAWSRDGQSLLFTSYLRENPDLYRLHLKTRKLDWLSHK----RGLNTGAAVSPDGKKIAL 58 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 ++ D +IY +D RLT++ +IS ++SPD +I + Sbjct: 59 TLSIDGNTEIYLMDPDGKNLTRLTDSWGQDISPTWSPDGKRIALSA 104 >gi|153951205|ref|YP_001397366.1| translocation protein TolB [Campylobacter jejuni subsp. doylei 269.97] gi|152938651|gb|ABS43392.1| putative tolB protein [Campylobacter jejuni subsp. doylei 269.97] Length = 402 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDRPTLYRYDLNTNKASKILSS-GGMVVASDVSVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|170693891|ref|ZP_02885048.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M] gi|170141309|gb|EDT09480.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M] Length = 642 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 31/173 (17%) Query: 265 FSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIVFESD 321 FS +G+ + + ++D A ++Y V + ERLT+ + ++ +A +SP D + I F S Sbjct: 78 FSKDGQWLVFTSERDGAGQSNLYRVKVDGTGLERLTDHIAVDDAAVFSPTDPNVIAFVSS 137 Query: 322 REGKEQLYVMQ-----------SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 R G + +N + + YF P WSP G +A + +G Sbjct: 138 RRGNDGFGTTNVWTLNLSTGALNNVTGSLGFDPTRPHGYFRPSWSPDGKWLALSSDTGSD 197 Query: 371 F---------------AIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIF 406 + +I +++ DGS + + V + +P+WSP G+ ++F Sbjct: 198 WRGHNLPTGWERTQESSIYIVRPDGSGWKKIAGVSGYDEGSPSWSPDGKRVVF 250 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 33/207 (15%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD----EDILRVYLM 242 G + + L + + DG R L PS + FS + Q + + + D ++ RV + Sbjct: 47 GPVSSELYISNADGTGERKLIPSTG-FDYHASFSKDGQWLVFTSERDGAGQSNLYRVKVD 105 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE----AMDIYSVDLQSNATERLT 298 T ++R I + + +P + A +S ++ ++++++L + A +T Sbjct: 106 GTGLERLTDHIAVDDAAVFSP--TDPNVIAFVSSRRGNDGFGTTNVWTLNLSTGALNNVT 163 Query: 299 NTLFINIS-------ASYSPDSSQIVFESD---------------REGKEQLYVMQSNGS 336 +L + + S+SPD + SD R + +Y+++ +GS Sbjct: 164 GSLGFDPTRPHGYFRPSWSPDGKWLALSSDTGSDWRGHNLPTGWERTQESSIYIVRPDGS 223 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAF 363 K+I+ P WSP G + F Sbjct: 224 GWKKIAGVSGYDEGSPSWSPDGKRVVF 250 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 20/144 (13%) Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-------FT 364 +SS V + G ++Y ++G D I+Q A F P WSP +A FT Sbjct: 394 NSSIAVANPNLSGYTRIYDPATSGLDPAAIAQGL-AGAFQPAWSPDRQWVAFGVGNWFFT 452 Query: 365 KFSGEKFAIGVMKKDGS---QERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + +G I ++ DGS Q L + S N P++SP G+ L++ D G ++ Sbjct: 453 RSTGPA-QIMRIRADGSMNGQAEALTDGSINSGFPSYSPDGKKLVYRVWSDAVQGLRI-- 509 Query: 421 IDLNGRNETLI-----NTPAYASD 439 +DL R+ T++ N P ++ D Sbjct: 510 LDLATRSTTVLTSGADNLPGWSPD 533 >gi|307354076|ref|YP_003895127.1| hypothetical protein Mpet_1938 [Methanoplanus petrolearius DSM 11571] gi|307157309|gb|ADN36689.1| hypothetical protein Mpet_1938 [Methanoplanus petrolearius DSM 11571] Length = 457 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 32/179 (17%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY---SPDSSQIVFESDREGKE--- 326 L+ + + V Q ++ ++N F S +Y SPD ++I S E KE Sbjct: 26 LVPAVAESNFTLSPVQPQLSSPYEISNLTFCGESCNYAVGSPDGTEIAL-SCMEWKEPCS 84 Query: 327 -------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-------TKF 366 L++M+S+GS + +IS + P+WSP+GD IA T Sbjct: 85 CSYSCLGCAEDDPHLFLMKSDGSGKHQISNLN--IFGVPLWSPKGDAIAIKGLEKSGTPM 142 Query: 367 SGEKFA---IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 G +++ I ++ D + E LLV S+ A WSP GR L + + + + S+D Sbjct: 143 DGFRYSNEGIWMVSVDTNDEYLLVNSSDAWAAAWSPDGRFLAYILYNEENITVNIISVD 201 >gi|305667382|ref|YP_003863669.1| hypothetical protein FB2170_14083 [Maribacter sp. HTCC2170] gi|88709430|gb|EAR01663.1| hypothetical protein FB2170_14083 [Maribacter sp. HTCC2170] Length = 1098 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISAS 308 PKR+ ++ P FS++GK+ + DE++ I+S+ + +LT I + + Sbjct: 396 PKRLTKSENLEFEPSFSADGKKLVYVSWNDESLGAIHSIPVTGGTPSKLTTQKGIYRTPT 455 Query: 309 YSPDSSQIVFESDREGKEQ---------LYVMQSNGSDQKRISQDKEASYF 350 YSPD IV+ + +Q LY M +NG++ K IS++ E F Sbjct: 456 YSPDGKMIVYGKESGNNDQGRTFSKKSGLYTMSANGTNPKWISKEGEYPQF 506 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 21/180 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIYS+ + + L + I +SP+ +I F SD G + ++ M +GSD K+I+ Sbjct: 73 DIYSIPITGGNAKILRTGIPFEIQPRFSPNGKKIAFTSDAGGGDNIWTMNIDGSDAKQIT 132 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQ-ERLLVEDSNLQ 393 ++K + W P G+ K +GE + + G Q + + ++ Sbjct: 133 KEKFRLLNNVSWMPDGNYFVARKHFTSQRSLGAGELWQYHISGGSGLQLTKRKNDQQDVN 192 Query: 394 APTWSPSGRSLIFSR--------KKDGDTGSKLYSIDL----NGRNETLINTPAYASDPQ 441 P SP G+ + +S + + D ++Y I G+ + P A+ PQ Sbjct: 193 EPNISPDGKYMYYSEDVYPGGYFQYNKDPNKQIYVIKRYDFETGKTIIVTGGPGGAARPQ 252 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 21/182 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRIS 342 +++ L + +RLT + + S+S D ++V+ S + E ++ + G +++ Sbjct: 386 LWTKRLPNGKPKRLTKSENLEFEPSFSADGKKLVYVSWNDESLGAIHSIPVTGGTPSKLT 445 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQERLLVEDSNLQ 393 K Y P +SP G +I + K SG +K + M +G+ + + ++ + Sbjct: 446 TQK-GIYRTPTYSPDGKMIVYGKESGNNDQGRTFSKKSGLYTMSANGTNPKWISKEG--E 502 Query: 394 APTWSPSGRSLIFSRKKD--GDTGSKLYSIDLNGRNETLINTPAYAS------DPQWVGF 445 P ++ +G+ + + G+ L+SIDLNG+++ YA+ D +WV F Sbjct: 503 YPQFTANGKRIFYRTGGTYFGNLTKTLHSIDLNGKDKRNHIKSKYANLLVPSPDNKWVAF 562 Query: 446 MD 447 + Sbjct: 563 TN 564 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 12/139 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SPD +VF + L+ + KR+++ + F+P +S G + + + Sbjct: 369 AVTSPDKKTLVFSA----LGHLWTKRLPNGKPKRLTKSENLE-FEPSFSADGKKLVYVSW 423 Query: 367 SGEKFAI--GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + E + G+ +L + + PT+SP G+ +++ ++ + + +S Sbjct: 424 NDESLGAIHSIPVTGGTPSKLTTQKGIYRTPTYSPDGKMIVYGKESGNNDQGRTFS---- 479 Query: 425 GRNETLINTPAYASDPQWV 443 + L A ++P+W+ Sbjct: 480 -KKSGLYTMSANGTNPKWI 497 >gi|149174000|ref|ZP_01852628.1| probable TolB protein (Precursor) [Planctomyces maris DSM 8797] gi|148846980|gb|EDL61315.1| probable TolB protein (Precursor) [Planctomyces maris DSM 8797] Length = 310 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 25/156 (16%) Query: 306 SASYSPDSSQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S S+S D +++F+ + + ++ V+ ++GS+ K + + P WSP G+ Sbjct: 63 SPSFSADGQKLLFDGWKSQAGETSIQAKIIVVNADGSNLKVLGPGRM-----PSWSPGGN 117 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 IAF++ + + + +M DGS L+ D+ WSP+GR L +S +G ++Y Sbjct: 118 RIAFSQHA--PYGVAIMHADGSHRTLI--DAGGWGAQWSPNGRKLAYSFPVNGRGNIRIY 173 Query: 420 SI------DLNGRNETLINTP----AYASDPQWVGF 445 + DL E+ + A++ D QW+ F Sbjct: 174 DLIEGTKTDLFPAGESPYTSVYWNMAWSPDSQWLCF 209 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 33/194 (17%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 I+ + V++ DG+N++ L P R P +SP ++A++ + + ++ Sbjct: 87 IQAKIIVVNADGSNLKVLGPGR-----MPSWSPGGNRIAFSQHAPYGVAIMH-------- 133 Query: 249 APKRIGNFRSMILA----PRFSSNGKRALISVQKDEAMDIYSVDLQSN-------ATERL 297 G+ R++I A ++S NG++ S + +I DL A E Sbjct: 134 ---ADGSHRTLIDAGGWGAQWSPNGRKLAYSFPVNGRGNIRIYDLIEGTKTDLFPAGESP 190 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ----KRISQDKEASYFDPV 353 +++ N+ ++SPDS + F+ R V N + + K + A Y D Sbjct: 191 YTSVYWNM--AWSPDSQWLCFKGCRAEDRSFDVATINIAGKQAGYKVHYHHETAPYADFA 248 Query: 354 WSPQGDLIAFTKFS 367 W P G++I F + Sbjct: 249 WHPVGEVIVFCPHT 262 >gi|256377038|ref|YP_003100698.1| hypothetical protein Amir_2931 [Actinosynnema mirum DSM 43827] gi|255921341|gb|ACU36852.1| WD40 domain protein beta Propeller [Actinosynnema mirum DSM 43827] Length = 1029 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 34/139 (24%) Query: 308 SYSPDSSQIVFESDREGK-----EQLYVMQSNGSDQKRIS-QDKEAS--YFDPVWSPQGD 359 +YSPD +IV+ + EG ++++ ++GSD R++ D+ + FDP WSP G+ Sbjct: 380 TYSPDGRKIVYTA-FEGPLGSRLQRIWTANADGSDPVRLNVSDRLPTDWEFDPAWSPNGE 438 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLV------------------EDSNLQAPTWSPSG 401 IA T+ S G ++ D R+ V ED P WSP G Sbjct: 439 QIAITRRS-----PGGIRPDNGPSRIAVVDASTGQVLRELVAPPGAEDQEDTQPAWSPDG 493 Query: 402 RSLIFSRKK--DGDTGSKL 418 R+L F+R D +TG+++ Sbjct: 494 RTLSFTRGVVFDDETGTEV 512 >gi|198274139|ref|ZP_03206671.1| hypothetical protein BACPLE_00276 [Bacteroides plebeius DSM 17135] gi|198273217|gb|EDY97486.1| hypothetical protein BACPLE_00276 [Bacteroides plebeius DSM 17135] Length = 1084 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK L + D IY V + +LT S +SPD QI F SDR Sbjct: 30 RISPDGKEILFCYKGD----IYKVSAKGGEAVQLTTQESYESSPVWSPDGKQIAFASDRF 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G ++VM +NG +R++ + AS ++P G I F+ Sbjct: 86 GNTDVFVMPANGGSARRLTTNS-ASEIPSAFTPDGKFIVFS 125 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I+F K +Y + + G + +++ +E+ PVWSP G IAF Sbjct: 32 SPDGKEILFCY----KGDIYKVSAKGGEAVQLTT-QESYESSPVWSPDGKQIAFASDRFG 86 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLYSIDL----- 423 + VM +G R L +S + P+ ++P G+ ++FS S L+ Sbjct: 87 NTDVFVMPANGGSARRLTTNSASEIPSAFTPDGKFIVFSASIQDPASSALFPTSAMTELY 146 Query: 424 -----NGRNETLINTPA 435 G+ E ++ TPA Sbjct: 147 KVSAEGGKTEQILGTPA 163 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 23/181 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD----- 337 +++ ++ T+++T+T S+ D+ +V+ S+R+G QLY + + Sbjct: 337 EVFVTSVEYGTTKQITHTPEAEEGLSFGADNRTLVYASERDGNWQLYKAEIERKEDLNFP 396 Query: 338 ------QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++ + K P +SP G +AF + ++ + V+ + ++ R + + S Sbjct: 397 NATLIKEEVLLPSKTVERMYPKFSPDGKEVAFIE---DRIRLKVLNLETNKVRQITDGST 453 Query: 392 LQAPT------WSPSGR--SLIF-SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + + WSP G+ +L F K D T L S D G L N+ +S P+W Sbjct: 454 WYSLSGGFNYAWSPDGKWFTLEFIGNKHDPYTDIALVSADGKGELVNLTNSGYTSSSPKW 513 Query: 443 V 443 Sbjct: 514 T 514 >gi|239990874|ref|ZP_04711538.1| hypothetical protein SrosN1_26444 [Streptomyces roseosporus NRRL 11379] Length = 842 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 20/160 (12%) Query: 298 TNTLFINISASYSPDSSQ----IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ LF + A Y D S +VF S R+ K Q+Y+ ++GS +R++ ++A+ P Sbjct: 75 TDPLFGDGPAHYDQDPSARGDVLVFTSLRDSAKPQVYIRGADGS-VRRLTDGRDAAR--P 131 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD-------GSQERLLVEDS-NLQAPTWSPSGRSL 404 SP G + F S E G +++D GS R L + + N ++PTWSP G + Sbjct: 132 ELSPDGRTVVFD--SAEPGPGGTVQRDLWSVGVDGSNLRRLTDTADNEESPTWSPDGTRI 189 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQW 442 ++ D G ++Y D+ G +T I+ A++P W Sbjct: 190 AYACDGDAVLGWQIYVRDVAGGPQTRISDAGGGDATEPSW 229 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 24/144 (16%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKR 340 D++SV + + RLT+T S ++SPD ++I + D + Q+YV G Q R Sbjct: 156 DLWSVGVDGSNLRRLTDTADNEESPTWSPDGTRIAYACDGDAVLGWQIYVRDVAGGPQTR 215 Query: 341 ISQDKEASYFDPVWSPQGD-----LIAFTKFSGEKFAIGVMKKDGSQ---------ERLL 386 IS +P W+P D +A+T + + DG++ +R L Sbjct: 216 ISDAGGGDATEPSWNPGADPADRNTVAYTLTTNPDPDV----DDGTELRATEGLGTDRPL 271 Query: 387 VEDSNLQ----APTWSPSGRSLIF 406 + + + + +W P G+ ++F Sbjct: 272 LAGGHAEWGTRSASWLPDGKDVVF 295 >gi|239944417|ref|ZP_04696354.1| hypothetical protein SrosN15_25687 [Streptomyces roseosporus NRRL 15998] Length = 835 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 20/160 (12%) Query: 298 TNTLFINISASYSPDSSQ----IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ LF + A Y D S +VF S R+ K Q+Y+ ++GS +R++ ++A+ P Sbjct: 75 TDPLFGDGPAHYDQDPSARGDVLVFTSLRDSAKPQVYIRGADGS-VRRLTDGRDAAR--P 131 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD-------GSQERLLVEDS-NLQAPTWSPSGRSL 404 SP G + F S E G +++D GS R L + + N ++PTWSP G + Sbjct: 132 ELSPDGRTVVFD--SAEPGPGGTVQRDLWSVGVDGSNLRRLTDTADNEESPTWSPDGTRI 189 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQW 442 ++ D G ++Y D+ G +T I+ A++P W Sbjct: 190 AYACDGDAVLGWQIYVRDVAGGPQTRISDAGGGDATEPSW 229 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 24/144 (16%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKR 340 D++SV + + RLT+T S ++SPD ++I + D + Q+YV G Q R Sbjct: 156 DLWSVGVDGSNLRRLTDTADNEESPTWSPDGTRIAYACDGDAVLGWQIYVRDVAGGPQTR 215 Query: 341 ISQDKEASYFDPVWSPQGD-----LIAFTKFSGEKFAIGVMKKDGSQ---------ERLL 386 IS +P W+P D +A+T + + DG++ +R L Sbjct: 216 ISDAGGGDATEPSWNPGADPADRNTVAYTLTTNPDPDV----DDGTELRATEGLGTDRPL 271 Query: 387 VEDSNLQ----APTWSPSGRSLIF 406 + + + + +W P G+ ++F Sbjct: 272 LAGGHAEWGTRSASWLPDGKDVVF 295 >gi|83816446|ref|YP_446482.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855] gi|83757840|gb|ABC45953.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855] Length = 1065 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDL 360 FIN + ++SPD + F + +G+ ++ G + R + + + + WSP G Sbjct: 385 FINSAGAWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQS 444 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFS--RKKDG 412 IAF+ G + V D R L D + LQ PTWSP G +L F+ R +DG Sbjct: 445 IAFSGLEGGLSDLYVYDLDQKNVRQLTNDRYAALQ-PTWSPDGETLAFTTDRGRDG 499 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 31/239 (12%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRF--- 265 +Q+ P SP+ + VA+ + + +++ D + + RS A RF Sbjct: 329 NQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINS 388 Query: 266 ----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA----SYSPDSSQIV 317 S +G+R D +I + ++Q+ E T T N+ A ++SPD I Sbjct: 389 AGAWSPDGRRFAFITFADGRNEINTFNVQTG--EIRTRTAVENVGAIHNLAWSPDGQSIA 446 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F G LYV + + ++++ D+ A+ P WSP G+ +AFT G Sbjct: 447 FSGLEGGLSDLYVYDLDQKNVRQLTNDRYAA-LQPTWSPDGETLAFTTDRGRD-GTNFET 504 Query: 378 KDGSQERLLVED-------------SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +ER+ + D + +Q P +SP GRS+ F +DG Y +D Sbjct: 505 LEYGEERIGLIDVASGEIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGFKDVYRYDLD 563 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 303 INISASYSPDSSQIVFESDRE-GKEQLYVMQS-NGSDQKRISQDKEASYFDPV------- 353 +NIS + SPD + F S R L+V + G + + + +FD + Sbjct: 331 LNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAG 390 Query: 354 -WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRK 409 WSP G AF F+ + I + R N+ A WSP G+S+ FS Sbjct: 391 AWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQSIAFSGL 450 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQW 442 + G S LY DL+ +N + YA+ P W Sbjct: 451 EGGL--SDLYVYDLDQKNVRQLTNDRYAALQPTW 482 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 21/187 (11%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD------TRI 246 L V D D N+R LT R L +P +SP+ + +A+ T D ++ I Sbjct: 457 LYVYDLDQKNVRQLTNDRYAAL-QPTWSPDGETLAFTTDRGRDGTNFETLEYGEERIGLI 515 Query: 247 DRAPKRIGNFR----SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN--T 300 D A I R M P+FS +G+ +D D+Y DL AT R+T T Sbjct: 516 DVASGEIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGFKDVYRYDLDEEATYRVTELKT 575 Query: 301 LFINISA-----SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS---YFDP 352 I+A S + S +++F G + + + +R++ +EAS P Sbjct: 576 GVSGITALSPALSVARRSGRMMFSVFSNGGYSIVGLSPEETKGERMTPKEEASNTAALLP 635 Query: 353 VWSPQGD 359 P+GD Sbjct: 636 PVQPKGD 642 >gi|294508417|ref|YP_003572475.1| conserved hypothetical protein, secreted [Salinibacter ruber M8] gi|294344745|emb|CBH25523.1| conserved hypothetical protein, secreted [Salinibacter ruber M8] Length = 1065 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDL 360 FIN + ++SPD + F + +G+ ++ G + R + + + + WSP G Sbjct: 385 FINSAGAWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQS 444 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFS--RKKDG 412 IAF+ G + V D R L D + LQ PTWSP G +L F+ R +DG Sbjct: 445 IAFSGLEGGLSDLYVYDLDQKNVRQLTNDRYAALQ-PTWSPDGETLAFTTDRGRDG 499 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 29/238 (12%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRF--- 265 +Q+ P SP+ + VA+ + + +++ D + + RS A RF Sbjct: 329 NQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINS 388 Query: 266 ----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA----SYSPDSSQIV 317 S +G+R D +I + ++Q+ E T T N+ A ++SPD I Sbjct: 389 AGAWSPDGRRFAFITFADGRNEINTFNVQTG--EIRTRTAVENVGAIHNLAWSPDGQSIA 446 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----- 372 F G LYV + + ++++ D+ A+ P WSP G+ +AFT G Sbjct: 447 FSGLEGGLSDLYVYDLDQKNVRQLTNDRYAA-LQPTWSPDGETLAFTTDRGRDGTNFETL 505 Query: 373 ------IGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 IG++ + + R + S P +SP GRS+ F +DG Y +D Sbjct: 506 EYGEERIGLIDVESGEIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGFKDVYRYDLD 563 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 303 INISASYSPDSSQIVFESDRE-GKEQLYVMQS-NGSDQKRISQDKEASYFDPV------- 353 +NIS + SPD + F S R L+V + G + + + +FD + Sbjct: 331 LNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAG 390 Query: 354 -WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRK 409 WSP G AF F+ + I + R N+ A WSP G+S+ FS Sbjct: 391 AWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQSIAFSGL 450 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQW 442 + G S LY DL+ +N + YA+ P W Sbjct: 451 EGGL--SDLYVYDLDQKNVRQLTNDRYAALQPTW 482 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 21/187 (11%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRA 249 L V D D N+R LT R L +P +SP+ + +A+ T D + + + RI Sbjct: 457 LYVYDLDQKNVRQLTNDRYAAL-QPTWSPDGETLAFTTDRGRDGTNFETLEYGEERIGLI 515 Query: 250 PKRIGNFRS-------MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN--T 300 G R+ M P+FS +G+ +D D+Y DL AT R+T T Sbjct: 516 DVESGEIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGFKDVYRYDLDEEATYRVTELKT 575 Query: 301 LFINISA-----SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS---YFDP 352 I+A S + S +++F G + + + +R++ +EAS P Sbjct: 576 GVSGITALSPALSVARRSGRMMFSVFSNGGYSIVGLSPEETKGERMTPKEEASNTAALLP 635 Query: 353 VWSPQGD 359 P+GD Sbjct: 636 PVQPKGD 642 >gi|294817300|ref|ZP_06775942.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|294322115|gb|EFG04250.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1047 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 26/206 (12%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ ++ + I+ + + RLT F + S+SPD ++I F S+R Sbjct: 112 PVISPDGREVAMAAYRGGFFSIWVMRTDGSRLRRLTGGPFDDRGPSWSPDGTRIAFSSER 171 Query: 323 EG---------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--K 365 G ++ + Q+ +QD FDPVWS G + F + Sbjct: 172 GGDPVAGSPYRIWTVNVRDGGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGR 231 Query: 366 FSGEKF---AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F+ I + DG ++ E + NL P SP+GR+ + R G + Sbjct: 232 FTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRT-AWLRSVPGPARPET 290 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 ++ ++G L A A P+W+G Sbjct: 291 ITLFVDGEPVALDGDLAPAP-PRWIG 315 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSR 408 P SP G +AF + ++ ++ G R +V S +Q P W+P GR+LI++ Sbjct: 375 PQLSPDGRTVAFAALN----SLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTD 430 Query: 409 KKDG 412 +DG Sbjct: 431 DRDG 434 >gi|219847846|ref|YP_002462279.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542105|gb|ACL23843.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM 9485] Length = 629 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 35/206 (16%) Query: 175 SRILFVSESV-------VSGIIKNSLCV---MDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 +R+L +SE V S NSL + + RD Y TP+ +SP+ + Sbjct: 433 TRLLVISERVDRPDLMLWSIADTNSLTIPSRLTRDQPACHYETPA---------WSPDGR 483 Query: 225 KVAY--------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA------PRFSSNGK 270 ++ + A Y E R Y + + + N R + R S +GK Sbjct: 484 RIYWVSDCDGYFAIYSAEPSYRPYSLRNNLVGFIAELSNIRKLSNQNANDRFARVSPDGK 543 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + +D +IY ++ + RLTN + + ++SPD Q+ F SDR+G ++Y+ Sbjct: 544 QIAFASDRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDRDGDFEIYI 603 Query: 331 MQ-SNGSDQKRISQDKEASYFDPVWS 355 + S+G+ ++++Q+ + P+W+ Sbjct: 604 LNVSDGTITQQVTQNTAQDRW-PLWT 628 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 18/125 (14%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQ----------------SNGSDQKRISQDKEASY 349 + ++SPD +I + SD +G +Y + + S+ +++S Sbjct: 475 TPAWSPDGRRIYWVSDCDGYFAIYSAEPSYRPYSLRNNLVGFIAELSNIRKLSNQNANDR 534 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 F V SP G IAF + I VM DGS R L + + APTWSP GR L F+ Sbjct: 535 FARV-SPDGKQIAFASDRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFAS 593 Query: 409 KKDGD 413 +DGD Sbjct: 594 DRDGD 598 >gi|291276672|ref|YP_003516444.1| putative protein tolB precursor [Helicobacter mustelae 12198] gi|290963866|emb|CBG39702.1| putative protein tolB precursor [Helicobacter mustelae 12198] Length = 418 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 40/363 (11%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 + ++ V+ DLQ + F L+ + S ++ NPD Q L + V+KE Sbjct: 45 DFAQEIYRVLLGDLQVTGHF-LVREGSKGRR--NPDYTEFIQQKTDLYINI----EVLKE 97 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 + ++V +L+DV + ++ K + A + +AH I+ D I D+ R + Sbjct: 98 DAN-IKVILKLFDVNMQNLVLNKAYTLDDEALYPFVAHKIAIDANNYIKAPSIDWMKRYV 156 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-----PRFSPNQQKVAYATYDD 233 +S +V G +N + + D Y R IL + P+++ +Q Y T Sbjct: 157 VLSANV--GPRRNDILISD-------YTLTYRKVILNDGLNVFPKWANAEQTEIYYTKIT 207 Query: 234 ED--ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D I+ Y + T I R R + + S +GK+AL+++ + DIY D + Sbjct: 208 RDFPIIIKYNIYTGISSEILR---GRGLAIVSNVSKDGKKALMTLAPNGDPDIYLYDFDT 264 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASY 349 ++T I++S ++ + + ++F SDR G ++ +Q N ++ + K S Sbjct: 265 KQRIQMTKYRGIDVSGNFIDNDTAMIFVSDRLGYPNIFTKKLQENAPIEQVVFHGKNNSS 324 Query: 350 FDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + + +T +F F + ++ R L + Q P +S G S Sbjct: 325 V----TAYNNYVVYTSRDTNNEFGQNTFNLYLISMKSDFIRRLTTNGVNQMPKFSADGGS 380 Query: 404 LIF 406 ++F Sbjct: 381 VMF 383 >gi|262194655|ref|YP_003265864.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078002|gb|ACY13971.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1598 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 125/287 (43%), Gaps = 19/287 (6%) Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES--VVSGIIKNSLCVMDRDGANIRY 205 P + ++ H + +I + E GD F + VVS S+ V + DG+ Sbjct: 946 PGALQEAKHLLYSNIAPVVFTEHGDAVYSATFSPDGRRVVSASWDQSVRVWNADGSGQPL 1005 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + + + FSP+ +++A A+ D +RV+ D P + + + RF Sbjct: 1006 VLRGHEDAVLSASFSPDGRRIASASKDKS--VRVWNADG--SGQPLLLRGHEEAVRSVRF 1061 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G R++IS D + +++ D + ++ SA +SPD +IV S+ Sbjct: 1062 SPDG-RSIISASNDTTIRVWNADGSGRPLVLHGHEDAVH-SAHFSPDGRRIVSASN---D 1116 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + V ++G+ + + + EA + +SP G I + ++ + DGS E Sbjct: 1117 KSVRVWNADGAGEPLVLRGHEAGVMEANFSPDGSRIVSASYDR---SVRIWPADGSGEAQ 1173 Query: 386 LV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++ + + A +SP G ++ D ++++ D +G + TL Sbjct: 1174 VLRGHEGRVYAAGFSPDGAYVV---SASSDKSARVWRADGSGLHWTL 1217 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 31/270 (11%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS NS+ V + DG+ + D+ + FSP+ ++V A+ D +RV+ D Sbjct: 1278 IVSASYDNSVRVWNADGSGEPVILRGHDKWVLWASFSPDGRRVISASLDKS--VRVWNAD 1335 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + R + FS +G R ++S D ++ +++ D S L L Sbjct: 1336 GSGEALVLR--GHEDGVFTADFSPDGAR-IVSASNDHSVRVWNAD-GSGRPRVLRGHLAR 1391 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW----SPQGD 359 SA +SPD ++IV S + + V +++GS + + + E DPVW SP G Sbjct: 1392 VHSAQFSPDGARIVSAS---VDKSVRVWRADGSGEPVVLRGHE----DPVWSARFSPDGQ 1444 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 I ++ V + DG+ E +++ D + +SP GR ++ + K D + Sbjct: 1445 RIVSAAMDK---SVRVWQADGTGEPVILRGHDDWVTWAEFSPDGRFIVSASK---DKTVR 1498 Query: 418 LYSIDLNGR------NETLINTPAYASDPQ 441 ++ D G+ +E +N ++ D Q Sbjct: 1499 VWRADGTGQPLVLRGHEMWVNKVRFSPDGQ 1528 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 18/228 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E +V+ +S+ V G+ D + FSP+ ++ A+YD+ +RV+ Sbjct: 1234 EHIVTSSYDSSVRVWRARGSGQPLALRGHDDAVVAASFSPDGARIVSASYDNS--VRVWN 1291 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D + P + +L FS +G+R +IS D+++ +++ D A + Sbjct: 1292 ADGSGE--PVILRGHDKWVLWASFSPDGRR-VISASLDKSVRVWNADGSGEALVLRGHED 1348 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + +A +SPD ++IV S+ + V ++GS + R+ + A +SP G I Sbjct: 1349 GV-FTADFSPDGARIVSASN---DHSVRVWNADGSGRPRVLRGHLARVHSAQFSPDGARI 1404 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW----SPSGRSLI 405 ++ V + DGS E +++ + P W SP G+ ++ Sbjct: 1405 VSASVDK---SVRVWRADGSGEPVVLRGH--EDPVWSARFSPDGQRIV 1447 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 14/224 (6%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS S+ V + DGA + + + E FSP+ ++ A+YD +R++ D Sbjct: 1110 IVSASNDKSVRVWNADGAGEPLVLRGHEAGVMEANFSPDGSRIVSASYDRS--VRIWPAD 1167 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + R + A FS +G ++S D++ ++ D S L Sbjct: 1168 GSGEAQVLR--GHEGRVYAAGFSPDGAY-VVSASSDKSARVWRAD-GSGLHWTLRGHDDG 1223 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SAS+S D IV S + V ++ GS Q + + + +SP G I Sbjct: 1224 VLSASFSADGEHIVTSS---YDSSVRVWRARGSGQPLALRGHDDAVVAASFSPDGARIVS 1280 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 + ++ V DGS E +++ D + ++SP GR +I Sbjct: 1281 ASYDN---SVRVWNADGSGEPVILRGHDKWVLWASFSPDGRRVI 1321 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS + S+ V DG+ + + ++ RFSP+ Q++ A D +RV+ D Sbjct: 1404 IVSASVDKSVRVWRADGSGEPVVLRGHEDPVWSARFSPDGQRIVSAAMDKS--VRVWQAD 1461 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + P + + FS +G R ++S KD+ + ++ D + +++ Sbjct: 1462 GTGE--PVILRGHDDWVTWAEFSPDG-RFIVSASKDKTVRVWRADGTGQPLVLRGHEMWV 1518 Query: 304 NISASYSPDSSQIVFESD 321 N +SPD ++V SD Sbjct: 1519 N-KVRFSPDGQRLVSASD 1535 >gi|297809975|ref|XP_002872871.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp. lyrata] gi|297318708|gb|EFH49130.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp. lyrata] Length = 652 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 15/96 (15%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVM-----QSNGSDQKRISQDKEASYFD--PVWSP 356 N S SPD IVF S R G + LY++ +SNG +R++ E + D P WSP Sbjct: 447 NAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNGGGIRRLT---EGPWIDTMPCWSP 503 Query: 357 QGDLIAFTKFSG-----EKFAIGVMKKDGSQERLLV 387 +GDLI F+ + F V++ DGS R ++ Sbjct: 504 KGDLIGFSSNRHNPANIDAFGAYVVRPDGSGLRRIL 539 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 P SP GDLIA I V K DGS+ L++D +WSP+ R +I++ Sbjct: 345 PSSSPNGDLIALNSDFDINGGIKVAKSDGSKRWTLIKDRTAFYNSWSPTERHVIYT 400 >gi|153808186|ref|ZP_01960854.1| hypothetical protein BACCAC_02472 [Bacteroides caccae ATCC 43185] gi|149129089|gb|EDM20305.1| hypothetical protein BACCAC_02472 [Bacteroides caccae ATCC 43185] Length = 1095 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 23/151 (15%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SP+ ++IVF K +Y + + G +++ +ASY +PVWSP G IAF Sbjct: 28 ARISPNGTEIVFCY----KGDIYKVPAQGGTAVQLTT--QASYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLYSIDL- 423 F + +M DG + L S + P+ ++P G+ ++FS GS L+ Sbjct: 82 DRNGNFDLFIMPADGGTAQRLTYHSASEIPSAFTPDGKFVLFSASIQDPAGSALFPTGAM 141 Query: 424 ---------NGRNETLINTPAYASDPQWVGF 445 GR E ++ TPA +WV F Sbjct: 142 TELYKVPAGGGRTEQVLATPA-----EWVCF 167 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S NG + + D IY V Q +LT + +SPD QI F SDR Sbjct: 29 RISPNGTEIVFCYKGD----IYKVPAQGGTAVQLTTQASYEANPVWSPDGKQIAFASDRN 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G L++M ++G +R++ AS ++P G + F+ Sbjct: 85 GNFDLFIMPADGGTAQRLTY-HSASEIPSAFTPDGKFVLFS 124 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 36/126 (28%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ T+++TNT + S++PD+ +V+ S+R G QLY +I+ Sbjct: 342 DVFVTSTDYTTTKQITNTPGKEAAVSFAPDNRTLVYASERTGNWQLYTA--------KIA 393 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPS 400 + +EA++ P LI +E +L+ ++ P +SP Sbjct: 394 RKEEANF------PNATLI--------------------EEEVLLPSKTVERAYPQYSPD 427 Query: 401 GRSLIF 406 G+ L F Sbjct: 428 GKELAF 433 >gi|86153862|ref|ZP_01072065.1| protein TolB [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842823|gb|EAQ60035.1| protein TolB [Campylobacter jejuni subsp. jejuni HB93-13] Length = 333 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A S +G + L+++ Sbjct: 109 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVSVDGSKLLVTM 167 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 168 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 227 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 228 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 282 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 283 KNLFPRFSSDGGSIVF 298 >gi|291447884|ref|ZP_06587274.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291350831|gb|EFE77735.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 839 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 20/160 (12%) Query: 298 TNTLFINISASYSPDSSQ----IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ LF + A Y D S +VF S R+ K Q+Y+ ++GS +R++ ++A+ P Sbjct: 79 TDPLFGDGPAHYDQDPSARGDVLVFTSLRDSAKPQVYIRGADGS-VRRLTDGRDAAR--P 135 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD-------GSQERLLVEDS-NLQAPTWSPSGRSL 404 SP G + F S E G +++D GS R L + + N ++PTWSP G + Sbjct: 136 ELSPDGRTVVFD--SAEPGPGGTVQRDLWSVGVDGSNLRRLTDTADNEESPTWSPDGTRI 193 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQW 442 ++ D G ++Y D+ G +T I+ A++P W Sbjct: 194 AYACDGDAVLGWQIYVRDVAGGPQTRISDAGGGDATEPSW 233 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKR 340 D++SV + + RLT+T S ++SPD ++I + D + Q+YV G Q R Sbjct: 160 DLWSVGVDGSNLRRLTDTADNEESPTWSPDGTRIAYACDGDAVLGWQIYVRDVAGGPQTR 219 Query: 341 ISQDKEASYFDPVWSPQGD 359 IS +P W+P D Sbjct: 220 ISDAGGGDATEPSWNPGAD 238 >gi|332662868|ref|YP_004445656.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] gi|332331682|gb|AEE48783.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] Length = 1078 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ Q L + YSPD +I+F SD G + +VM +G + ++I+ Sbjct: 59 DIYAISAQGGEARLLRGGHAFEVQPKYSPDGQKILFTSDAGGGDNAWVMDRDGKNARQIT 118 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVED-SNLQ 393 ++ + +W+P G+ I K +GE + + G Q D +L Sbjct: 119 KEDFRLVNNSIWTPDGEYIITRKHFTSQRSLGAGELWMYHLSGGKGIQLTSRKNDQQDLN 178 Query: 394 APTWSPSGRSLIFS 407 P SP GR + +S Sbjct: 179 EPNISPDGRYVYYS 192 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 14/167 (8%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISAS 308 P+R+ P FS +GK L D A + + L + A ++ + + Sbjct: 383 PQRLTKSTDFEFEPTFSPDGKSLLYVTHNDSASGTLRRIQLDNTAASPVSTEPANYRTPA 442 Query: 309 YSPDSSQIVFESD---------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 YSPD IVF+ D K +Y+++ +G I+ A +P ++ +GD Sbjct: 443 YSPDGQLIVFKKDGSSAAMGPANTAKPGIYLLKVSGGPATFIT----AQGNNPRFNAKGD 498 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 I +T G ++G K DG+ ER+ + + T SP + + F Sbjct: 499 RIYYTLGGGMNMSMGSCKLDGTDERIHLRSTYGSQFTVSPDEKWVAF 545 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 23/181 (12%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRIS 342 ++ DL + +RLT + ++SPD +++ + + L +Q + + +S Sbjct: 373 LWKKDLPNGTPQRLTKSTDFEFEPTFSPDGKSLLYVTHNDSASGTLRRIQLDNTAASPVS 432 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG----------VMKKDGSQERLLVEDSNL 392 + A+Y P +SP G LI F K G A+G ++K G + N Sbjct: 433 TEP-ANYRTPAYSPDGQLIVFKK-DGSSAAMGPANTAKPGIYLLKVSGGPATFITAQGN- 489 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS------DPQWVGFM 446 P ++ G + ++ G + S L+G +E + Y S D +WV F+ Sbjct: 490 -NPRFNAKGDRIYYTL--GGGMNMSMGSCKLDGTDERIHLRSTYGSQFTVSPDEKWVAFV 546 Query: 447 D 447 D Sbjct: 547 D 547 >gi|322379221|ref|ZP_08053612.1| translocation protein TolB [Helicobacter suis HS1] gi|322379706|ref|ZP_08054019.1| translocation protein TolB [Helicobacter suis HS5] gi|321147855|gb|EFX42442.1| translocation protein TolB [Helicobacter suis HS5] gi|321148361|gb|EFX42870.1| translocation protein TolB [Helicobacter suis HS1] Length = 413 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 160/372 (43%), Gaps = 32/372 (8%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K++ +++ DL+ S F ++ + + + DS+ + G Q+LV IK ++ Sbjct: 46 KIARLLASDLKISGHFEVMGAPQIQTQTPSYDSLA------TKGIQILVE---IKADQNH 96 Query: 124 LRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 ++ L+D+ +R K + F++ A + IAH ++ D I + R++ ++ Sbjct: 97 -QIHATLYDIANRSIKASKDYEFNTKALYPFIAHRVAIDTNALIQAPSIAWMQRMVVFAK 155 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G+ S+ V D + + + + +F + +Q + + Y E + Y Sbjct: 156 YLSPGV--TSIVVADYTLSYQQEIIKNNLLNIFPKWANADQSAIYFTQYLREPTIIKY-- 211 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D R ++ + I M S NG + L+S+ D DI+ D + +RLT Sbjct: 212 DIRTGKS-EAITQSSGMAAVSSVSKNGDKLLLSLAPDGQTDIFFYDTLKKSLKRLTTYSG 270 Query: 303 INISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I++ ++ + +VF SDR G +Y+ ++ N ++ + K + + GD Sbjct: 271 IDVMGTFVDNEKAMVFVSDRSGYPNIYLKKLRENAPVEQVVFYAKN----NDSITASGDN 326 Query: 361 IAFTKFSGEKFAIG--------VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 I + +K A G + K RL V N Q P +S G++++F +K Sbjct: 327 IVYVS-REDKDANGQSTFNLHLITLKSDYVRRLTVSGVN-QMPRFSYDGKAVMFLKKAAS 384 Query: 413 DTGSKLYSIDLN 424 + + +D N Sbjct: 385 QSALGVILLDSN 396 >gi|262198787|ref|YP_003269996.1| hypothetical protein Hoch_5623 [Haliangium ochraceum DSM 14365] gi|262082134|gb|ACY18103.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365] Length = 956 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 DQ+ P +SP+ Q++A++ ++ +++ D +RA R+ R++ ++P FS +G Sbjct: 435 DQVA-TPAWSPDGQRIAFSAWESGGYRDIWIFDVASERA-TRLTRDRALDVSPVFSPDGA 492 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + +IY+ + + A ++TN + ++A SPD +++V++ G LY Sbjct: 493 YLFYASDRSGIFNIYAHEWATGALYQVTNVIGGAMAAEISPDGTRLVYQGFGVGGYDLYE 552 Query: 331 M 331 + Sbjct: 553 L 553 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY D++ A + +T+ L A SPD + F E + +L +M + R+ Sbjct: 369 DIYRWDVRETAPQPITHGLRARQPAV-SPDERTVAFVLSGESRSRLALMPLEPYAEHRVV 427 Query: 343 QDKEASYFD----PVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLVEDSNLQ-APT 396 E FD P WSP G IAF+ + SG I + + L D L +P Sbjct: 428 WSGEHR-FDQVATPAWSPDGQRIAFSAWESGGYRDIWIFDVASERATRLTRDRALDVSPV 486 Query: 397 WSPSGRSLIFSRKKDG 412 +SP G L ++ + G Sbjct: 487 FSPDGAYLFYASDRSG 502 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI---GNFR-SMILAPRFSSNGKR 271 +P SP+++ VA+ E R+ LM A R+ G R + P +S +G+R Sbjct: 391 QPAVSPDERTVAFVL-SGESRSRLALMPLE-PYAEHRVVWSGEHRFDQVATPAWSPDGQR 448 Query: 272 ALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 S + DI+ D+ S RLT +++S +SPD + + + SDR G +Y Sbjct: 449 IAFSAWESGGYRDIWIFDVASERATRLTRDRALDVSPVFSPDGAYLFYASDRSGIFNIYA 508 Query: 331 MQ 332 + Sbjct: 509 HE 510 >gi|225437689|ref|XP_002279803.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 677 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFD--PVWSPQGDL 360 N S SPD +VF S R G + LY++ + NG + I Q E + D P WSP G L Sbjct: 473 NAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVNGELEGGIRQLTEGPWIDTMPSWSPDGKL 532 Query: 361 IAFTKFSGEK-----FAIGVMKKDGSQER 384 IAF+ F+I V++ DGS R Sbjct: 533 IAFSSNRHNPDNLNAFSIYVIRPDGSDLR 561 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 12/172 (6%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQS--NATERLTN 299 I AP+RI R P KR ++ ++ + ++I+ +D + TE L N Sbjct: 257 ISEAPRRITPPRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESL-N 315 Query: 300 TLFINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 F + + SP+ + + R G+ + + S + + F P +S Sbjct: 316 PNFHHYNPFVSPECGFLGYHRFRGESSPGESTIPHLDPVVSPINELRMLRLNGSF-PSFS 374 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 P GDLIAF K + ++K DGS+ +++D +WSP+ + +I++ Sbjct: 375 PAGDLIAFNHDFEAKGGLKIVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYT 426 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 30/160 (18%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-- 365 S+SP I F D E K L +++S+GS + + +D+ A Y WSP + +T Sbjct: 372 SFSPAGDLIAFNHDFEAKGGLKIVKSDGSKRWTVLKDRTAFYNS--WSPTEKHVIYTSVG 429 Query: 366 --FSGEKFAIGVMK-------KDGSQERLLV--------EDSNLQAPTWSPSGRSLIFSR 408 F K + + + D +E + E N P+ SP G+S++F Sbjct: 430 PIFESVKATVQIARISFDPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVF-- 487 Query: 409 KKDGDTGSK-LYSID-----LNGRNETLINTPAYASDPQW 442 + G +G+K LY ID L G L P + P W Sbjct: 488 -RSGRSGNKNLYIIDAVNGELEGGIRQLTEGPWIDTMPSW 526 >gi|212704938|ref|ZP_03313066.1| hypothetical protein DESPIG_03005 [Desulfovibrio piger ATCC 29098] gi|212671602|gb|EEB32085.1| hypothetical protein DESPIG_03005 [Desulfovibrio piger ATCC 29098] Length = 437 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/392 (19%), Positives = 171/392 (43%), Gaps = 20/392 (5%) Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPR---FQDWNSLGAQVLVTGR 115 + +G K+ ++V ++L L S I P P F+ + G+ ++VT Sbjct: 52 NGMGAKLQKLVEENLSFLPFMRLTPAASVLGGILLPGYEPPNLDFKRFQLAGSDIVVTTY 111 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFN 174 V+ R ++ ++ GK++ A ++A D+ + +TG F Sbjct: 112 WPNGDSGTSSVQIRAFETNTGGRLFGKEYPQVRAGDLPEVADRFCADLLEVLTGSGAFFR 171 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S + FV +S G + ++ ++ G ++R +T + + + P +SP+ + + + T+ DE Sbjct: 172 STLAFVKKS---GRLSANVWLVKPTGRDLRQITNIKGEAM-SPAWSPDGRFIVF-THIDE 226 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + + D R + +R+ ++++ P F+ + K A +++ I+ ++ Sbjct: 227 KSHSLGVWD-RKKGSVQRVRFPGNVVIGPSFTPDNKVA-VALSNGRYPVIFLLNHGFQKE 284 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPV 353 L IN+S ++ +++VF S R G Q+++ + R+S K Y + Sbjct: 285 RILEGGNSINVSPTFDRTGTKMVFTSSRLGGPQIFMKDLSSGSITRVS--KNGGYNTEAN 342 Query: 354 WSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 SP G L+ +++ + G + + M G + ++ + + P++ + F+ + Sbjct: 343 LSPDGTLVTYSRMTEYGHRIFVQDMVT-GLERQITFGPGSDEQPSFCGDSYFIAFASSRG 401 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASD-PQW 442 G G +Y +G + + T A+ P+W Sbjct: 402 GSRG--IYLTTRHGGDAKKVPTGGGAASFPRW 431 >gi|147767869|emb|CAN71280.1| hypothetical protein VITISV_027089 [Vitis vinifera] Length = 677 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFD--PVWSPQGDL 360 N S SPD +VF S R G + LY++ + NG + I Q E + D P WSP G L Sbjct: 473 NAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVNGELEGGIRQLTEGXWIDTMPSWSPDGKL 532 Query: 361 IAFTKFSGEK-----FAIGVMKKDGSQER 384 IAF+ F+I V++ DGS R Sbjct: 533 IAFSSNRHNPDNLNAFSIYVIRPDGSDLR 561 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 12/172 (6%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQS--NATERLTN 299 I AP+RI R P KR ++ ++ + ++I+ +D + TE L N Sbjct: 257 ISEAPRRITPPRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESL-N 315 Query: 300 TLFINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 F + + SP+ + + R G+ + + S + + F P +S Sbjct: 316 PNFHHYNPFVSPECGFLGYHRFRGESSPGESTIPHLDPVXSPINELRMLRLNGSF-PXFS 374 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 P GDLIAF K + ++K DGS+ +++D +WSP+ + +I++ Sbjct: 375 PAGDLIAFNHDFEAKGGLKIVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYT 426 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 26/144 (18%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--- 365 +SP I F D E K L +++S+GS + + +D+ A Y WSP + +T Sbjct: 373 FSPAGDLIAFNHDFEAKGGLKIVKSDGSKRWTVLKDRTAFYNS--WSPTEKHVIYTSXGP 430 Query: 366 -FSGEKFAIGVMK-------KDGSQERLLV--------EDSNLQAPTWSPSGRSLIFSRK 409 F K + + + D +E + E N P+ SP G+S++F Sbjct: 431 IFESVKATVQIARISFDPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVF--- 487 Query: 410 KDGDTGSK-LYSID-LNGRNETLI 431 + G +G+K LY ID +NG E I Sbjct: 488 RSGRSGNKNLYIIDAVNGELEGGI 511 >gi|260173764|ref|ZP_05760176.1| putative peptidase/protease family protein [Bacteroides sp. D2] gi|315922028|ref|ZP_07918268.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695903|gb|EFS32738.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1083 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 20/142 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD ++IVF K +Y + + G +++ +ASY +PVWSP G IAF Sbjct: 28 ARISPDGTEIVFCY----KGDIYKVPAQGGTAVQLTT--QASYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLY----- 419 F + +M DG R L S + P+ ++P G+ ++FS S L+ Sbjct: 82 DRNGNFDLFIMPADGGVARRLTYHSASEIPSAFTPDGKYVLFSASIQDPANSALFPTGAM 141 Query: 420 ------SIDLNGRNETLINTPA 435 S+D GR E ++ TPA Sbjct: 142 TELYKVSVD-GGRTEQVLATPA 162 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQASYEANPVWSPDGKQIAFASDRNGNFDLFIMPADGGVARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 104 Y-HSASEIPSAFTPDGKYVLFS 124 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 20/122 (16%) Query: 260 ILAPRFSSNGKRALISVQKDEAM-----DIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + A +FS A +S + D++ T+++TNT S S++PD+ Sbjct: 308 VAALKFSQGATSASVSPDGKQVAFIVRGDVFVTSTDYATTKQITNTPAKEASVSFAPDNR 367 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRI-------------SQDKEASYFDPVWSPQGDLI 361 +V+ S+R G QLY + + + S+ E +Y P +SP G + Sbjct: 368 TLVYASERTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERAY--PQYSPDGKEL 425 Query: 362 AF 363 AF Sbjct: 426 AF 427 >gi|51892094|ref|YP_074785.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] gi|51855783|dbj|BAD39941.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] Length = 739 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + S +SPD + F SDR G Q++++ +G + ++++Q + + DPVWSP G IAF Sbjct: 84 DTSPRWSPDGRTLAFVSDRGGDRQIWLIDRHGGEARQLTQMRHGA-GDPVWSPDGRYIAF 142 Query: 364 TKFSGEK 370 T G + Sbjct: 143 TSAVGPE 149 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 302 FINIS-ASYSPDSSQIVF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 F+ +S SPD + F +E + ++++ + G + +Q + P W Sbjct: 31 FVTVSDPQISPDGEVVAFVRTHIDPESKEPRSRIWMAPAAGGEPVPFTQGPKNDT-SPRW 89 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFS 407 SP G +AF G I ++ + G + R L + + P WSP GR + F+ Sbjct: 90 SPDGRTLAFVSDRGGDRQIWLIDRHGGEARQLTQMRHGAGDPVWSPDGRYIAFT 143 >gi|320107458|ref|YP_004183048.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319925979|gb|ADV83054.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 679 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 18/208 (8%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI---LRVYLMD---- 243 NSL V+ DGA +LT D+ + R+SP+ + Y + E L V +D Sbjct: 170 NSLLVVSADGATTSFLTGPHDEA-GDGRWSPDGSSIVYVSRKKEYFSGRLNVLKLDAHSG 228 Query: 244 ------TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 T + AP G S I +S +GK +Q IY + +++ Sbjct: 229 LPAGEPTVLYTAPVDRGGGWS-IRGAIWSPDGKTLATVLQNSGWNHIYLIPAAGGQPKQI 287 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQ-DKEASYFDPVW 354 T+ F + +YSPD + F S+R E L+ + +NG D +++ + D P W Sbjct: 288 TDGKFEDEDPAYSPDGKSLAFLSNRGLLEATNLWTIPANGGDAQQVVKFDVPGISSQPQW 347 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 SP I F S ++ + ++++ GSQ Sbjct: 348 SPDSSSIYFHHQSPQETSDLLVQQIGSQ 375 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 33/193 (17%) Query: 284 IYSVDLQSNATERLTNTLF--------INISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 I+ V + RLTN+ + S +SPD+ I+F+S R G L V+ ++G Sbjct: 120 IWVVSTSGGSPRRLTNSPAGGGDPRQAADRSPRWSPDAHWILFQSGRRGINSLLVVSADG 179 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVEDSNL- 392 + ++ + + D WSP G I + E F+ + V+K D E + L Sbjct: 180 ATTSFLTGPHDEA-GDGRWSPDGSSIVYVSRKKEYFSGRLNVLKLDAHSGLPAGEPTVLY 238 Query: 393 QAPT------------WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------T 433 AP WSP G++L + G + +Y I G I Sbjct: 239 TAPVDRGGGWSIRGAIWSPDGKTLATVLQNSG--WNHIYLIPAAGGQPKQITDGKFEDED 296 Query: 434 PAYASDPQWVGFM 446 PAY+ D + + F+ Sbjct: 297 PAYSPDGKSLAFL 309 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 37/252 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDT------RIDRAPKRIGNFRSMI-LAPRFSSNGKR 271 +SP+ +++A+A+ ++++ T R+ +P G+ R +PR+S + Sbjct: 105 WSPDSKQIAFASQGS-----IWVVSTSGGSPRRLTNSPAGGGDPRQAADRSPRWSPDAHW 159 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLY 329 L + + V T LT +SPD S IV+ S ++ +L Sbjct: 160 ILFQSGRRGINSLLVVSADGATTSFLTGPHDEAGDGRWSPDGSSIVYVSRKKEYFSGRLN 219 Query: 330 VMQSNGSDQKRISQDKEASYFDPV------------WSPQGDLIAFTKFSGEKFAIGVMK 377 V++ + + + + Y PV WSP G +A + I ++ Sbjct: 220 VLKLD-AHSGLPAGEPTVLYTAPVDRGGGWSIRGAIWSPDGKTLATVLQNSGWNHIYLIP 278 Query: 378 KDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-- 431 G Q + + ED + P +SP G+SL F + + L++I NG + + Sbjct: 279 AAGGQPKQITDGKFEDED---PAYSPDGKSLAFLSNRGLLEATNLWTIPANGGDAQQVVK 335 Query: 432 -NTPAYASDPQW 442 + P +S PQW Sbjct: 336 FDVPGISSQPQW 347 >gi|296273864|ref|YP_003656495.1| TolB domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098038|gb|ADG93988.1| TolB domain protein [Arcobacter nitrofigilis DSM 7299] Length = 422 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 217 PRFSPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P+++ ++Q Y T +++ L ++D K G MI+ + +G + L Sbjct: 196 PKWANDKQDSFYYTSYRGSSPQLIKYNLYTRKVDYIMKSQG----MIVCSDVNKDGSKLL 251 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 I+ + DIY D ++ ERLTN I++ A ++ + ++IVF SDR ++ + Sbjct: 252 ITASPEGQPDIYLYDTKNKRKERLTNYKGIDVGAHFAENDTKIVFVSDRLNHPNIFSKKI 311 Query: 334 NGSDQKRI----SQDKEASYFDP--VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 NG +R+ + A+ FD V+S + FT + + I + K RL Sbjct: 312 NGRGVERLVYHGKNNSSATTFDSYVVYSSRETQNEFTDNTFNLYLISL--KSDFIRRLTT 369 Query: 388 EDSNLQAPTWSPSGRSLIF 406 N Q P +S G S++F Sbjct: 370 NGVN-QFPKFSNDGESVLF 387 >gi|162454268|ref|YP_001616635.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161164850|emb|CAN96155.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1515 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 27/240 (11%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L FSP+ +++ +D +V+L + P + ++++ +S +G R + Sbjct: 1101 LLSTTFSPDGRRILATDWDK----KVWLWNADGTGDPVVLHGHQNVVFVAAWSPDG-RHI 1155 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 S D ++S DLQS + + + +A++SPD +IV S+ + V + Sbjct: 1156 ASGSWDGTARVWSADLQS-SPPVIGDHEAAVAAAAWSPDGRRIVTASE---DRTVRVRNA 1211 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV----ED 389 +G+ I + E F WSP G I T E + + V DG+ L++ E Sbjct: 1212 DGTGTPLILRGHEGRIFSATWSPDGKHIVTTS---EDYTVRVWSADGTGTPLILRGHHER 1268 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR------NETLINTPAYASDPQWV 443 N A WSP GR ++ D +++++ D G +E L+ +++ D + V Sbjct: 1269 VNFAA--WSPDGRRIV---SASDDLTARIWNADGTGEPLVLRGHELLVKYASWSPDSRRV 1323 >gi|86739661|ref|YP_480061.1| serine/threonine protein kinase [Frankia sp. CcI3] gi|86566523|gb|ABD10332.1| serine/threonine protein kinase [Frankia sp. CcI3] Length = 734 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 15/193 (7%) Query: 263 PRFSSNGKRALISVQKDEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 P S +G +I D+ +Y V L ++ RL N ++SPD +I + Sbjct: 541 PSLSPDGGFLVIRSTTDQTGTLNPGLYVVKLDGSSVRRL-NAKPQATDPAWSPDGERIAY 599 Query: 319 ESDREGKEQLYVM---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 S+ G + +++ + I+QD+ DPVWSP IAFT+ I Sbjct: 600 WSNSTGGNRGFIVVIPTQPDAQPTPITQDQGNGDSDPVWSPDSRKIAFTRAKNGDLEIFE 659 Query: 376 MKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS--RKKDGDTGSKLYSI---DLNGRNET 429 M DG+ R L + Q P ++P GR + FS R +LY + DLN + Sbjct: 660 MNSDGTDARQLTRVRGDDQDPAYAPDGR-IAFSGQRNPTNPDDRQLYVLNPDDLNDGDRK 718 Query: 430 LINTPAYASDPQW 442 L T + +W Sbjct: 719 LTTTGGFNGHARW 731 >gi|213027106|ref|ZP_03341553.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 170 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 43/168 (25%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M N Sbjct: 1 ALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNIN 60 Query: 335 GSDQKRI----SQDKEA------------------------------------SYFD--P 352 G +RI SQ+++A ++ D P Sbjct: 61 GGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETP 120 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 121 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 168 >gi|302327237|gb|ADL26438.1| conserved domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 418 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 21/128 (16%) Query: 316 IVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 IV+ + R +++M ++G++ + +++ +F P +P G + F + G Sbjct: 67 IVWATSRANPHHDIWIMNADGTNARALTKSNNVDWF-PRIAPDGSKVLFNRSKGGWVPEN 125 Query: 369 -----EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 EK+ + + DG+ E +VE++ TW P G+S++FSR K++++DL Sbjct: 126 DANYPEKWDLWTVGIDGTNETKIVENATWG--TWRPDGKSIVFSR------AGKVFTMDL 177 Query: 424 NGRNETLI 431 + ETL+ Sbjct: 178 ASKKETLV 185 >gi|218960530|ref|YP_001740305.1| putative Tricorn protease homolog [Candidatus Cloacamonas acidaminovorans] gi|167729187|emb|CAO80098.1| putative Tricorn protease homolog [Candidatus Cloacamonas acidaminovorans] Length = 1066 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 33/182 (18%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++ +L+ RLT L + +SPD QI F S EG ++Y+M S G + KR++ Sbjct: 22 DLWTFNLKDKVARRLTANLGMIRYPQFSPDGKQIAFTSTEEGTSEIYIMPSEGGEAKRLT 81 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSG 401 Y ++ G K Q L E DS +P P G Sbjct: 82 YLGAYPY-------------TLRWKGSKIIFASQHSSPLQHYNLYEIDSEGGSPVELPYG 128 Query: 402 RSLIFS-------------------RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 R+ S R + G G L + +G+ + LI+ + P W Sbjct: 129 RATHISFGEKGVVLGRNTGNPARWKRYRGGTAGYLLVDKNGDGKFKKLIDLKGNFAHPMW 188 Query: 443 VG 444 +G Sbjct: 189 IG 190 >gi|326446361|ref|ZP_08221095.1| hypothetical protein SclaA2_35082 [Streptomyces clavuligerus ATCC 27064] Length = 1100 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 26/206 (12%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ ++ + I+ + + RLT F + S+SPD ++I F S+R Sbjct: 112 PVISPDGREVAMAAYRGGFFSIWVMRTDGSRLRRLTGGPFDDRGPSWSPDGTRIAFSSER 171 Query: 323 EG---------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--K 365 G ++ + Q+ +QD FDPVWS G + F + Sbjct: 172 GGDPVAGSPYRIWTVNVRDGGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGR 231 Query: 366 FSGEKF---AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F+ I + DG ++ E + NL P SP+GR+ + R G + Sbjct: 232 FTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRT-AWLRSVPGPARPET 290 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 ++ ++G L A A P+W+G Sbjct: 291 ITLFVDGEPVALDGDLAPAP-PRWIG 315 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSR 408 P SP G +AF + ++ ++ G R +V S +Q P W+P GR+LI++ Sbjct: 375 PQLSPDGRTVAFAALN----SLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTD 430 Query: 409 KKDG 412 +DG Sbjct: 431 DRDG 434 >gi|182435850|ref|YP_001823569.1| hypothetical protein SGR_2057 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464366|dbj|BAG18886.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1063 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 24/162 (14%) Query: 298 TNTLFINISASYSPDSSQ----IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ LF + A Y D S +VF S R+ + Q+YV ++GS +R++ D++A++ P Sbjct: 54 TDPLFGDGPAHYDQDPSARGDVLVFTSLRDSARPQVYVRDADGS-VRRLTTDRDAAH--P 110 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD-------GSQERLLVEDS-NLQAPTWSPSGRSL 404 SP G + F S E G +++D GS R L + N ++PTWSP G + Sbjct: 111 ELSPDGRTVVFD--SAEPGPGGTVQRDLWSVGVDGSDLRRLSDTPDNEESPTWSPDGTRI 168 Query: 405 IFSRKKDGDT--GSKLYSIDLNGRNETLI-NTPAY-ASDPQW 442 ++ DGDT G +++ + G T I + PA A++P W Sbjct: 169 AYA--CDGDTLRGWQIFEQAVAGGPRTRISDGPAGDATEPSW 208 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKR 340 D++SV + + RL++T S ++SPD ++I + D + Q++ G + R Sbjct: 135 DLWSVGVDGSDLRRLSDTPDNEESPTWSPDGTRIAYACDGDTLRGWQIFEQAVAGGPRTR 194 Query: 341 ISQDKEASYFDPVWSPQGD-----LIAFT 364 IS +P W+P D L+A+T Sbjct: 195 ISDGPAGDATEPSWNPVDDDARRGLVAYT 223 >gi|261414780|ref|YP_003248463.1| WD40 domain protein beta Propeller [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371236|gb|ACX73981.1| WD40 domain protein beta Propeller [Fibrobacter succinogenes subsp. succinogenes S85] Length = 403 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 21/128 (16%) Query: 316 IVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 IV+ + R +++M ++G++ + +++ +F P +P G + F + G Sbjct: 52 IVWATSRANPHHDIWIMNADGTNARALTKSNNVDWF-PRIAPDGSKVLFNRSKGGWVPEN 110 Query: 369 -----EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 EK+ + + DG+ E +VE++ TW P G+S++FSR K++++DL Sbjct: 111 DANYPEKWDLWTVGIDGTNETKIVENATWG--TWRPDGKSIVFSR------AGKVFTMDL 162 Query: 424 NGRNETLI 431 + ETL+ Sbjct: 163 ASKKETLV 170 >gi|148656436|ref|YP_001276641.1| peptidase S41 [Roseiflexus sp. RS-1] gi|148568546|gb|ABQ90691.1| peptidase S41 [Roseiflexus sp. RS-1] Length = 1082 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 105/279 (37%), Gaps = 67/279 (24%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD-TRIDRA 249 +L V+ RDG +T D L P S + +K+A+ E +++ D T D A Sbjct: 219 ENLWVVPRDGGVAERVTSFTDGRLLWPSISADGKKIAF-----ERDFGIWIFDLTSGDMA 273 Query: 250 PKRIGNFRSMILAP-------------RFSSNGKRALISVQ----KDEAMDIYSVDLQSN 292 P I + L P S +GK+ V+ D A D + Sbjct: 274 PIPITVRQDAKLTPVRVQTYTRDVQELALSPDGKKIAFIVRGKIFADFADKENERDPRQG 333 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---QDKEASY 349 R++ T F + S+SPDS +V+ SDR G E++Y G + R++ + K A Sbjct: 334 LAYRVSQTAFRDSDVSWSPDSRSLVYVSDRHGDEEVYRYDFPGRSETRLTYGPKRKSAPC 393 Query: 350 FDP--------------------------------------VWSPQGDLIAFTKFSGEKF 371 F P WSP +AF F Sbjct: 394 FSPDGRWIAYASGDDEIRLIDVVSGADRGFIRAHFVFGASFSWSPDSRWLAFCAQDERFF 453 Query: 372 A-IGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFS 407 + + V + D Q + SN+QA P WSP GR ++F+ Sbjct: 454 SNLYVQRIDEEQPHQISFLSNIQAAGPLWSPDGRFIVFT 492 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 8/158 (5%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R + AP G R A DI+ V ERLT ++ +SPD + I Sbjct: 8 RPYLRAPSLDPTGNRVAFVY----AGDIWLVAADGGRAERLTAHPAGHMLPRWSPDGAAI 63 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAI 373 S R G+ +YV+ +G + +R++ S + WSP G+ I FT + G Sbjct: 64 ACTSTRTGQGDVYVVPLDGGEVRRVTYHDTQSAVE-CWSPDGNAIYFTSQRERQGTAIYR 122 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + D + L + SP GR + FS +D Sbjct: 123 VAISGDTPIRWIAQPYERLGTVSVSPCGRWIAFSLLRD 160 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%) Query: 289 LQSNAT-----ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 L SNA +RL++ +N ++PDS I F SDR+G E L+V+ +G +R++ Sbjct: 177 LASNAPDADDFQRLSDAPGLNYCPMWTPDSGLIYFVSDRDGCENLWVVPRDGGVAERVTS 236 Query: 344 DKEASYFDPVWSPQGDLIAFTK 365 + P S G IAF + Sbjct: 237 FTDGRLLWPSISADGKKIAFER 258 >gi|326776475|ref|ZP_08235740.1| hypothetical protein SACT1_2307 [Streptomyces cf. griseus XylebKG-1] gi|326656808|gb|EGE41654.1| hypothetical protein SACT1_2307 [Streptomyces cf. griseus XylebKG-1] Length = 1080 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 24/162 (14%) Query: 298 TNTLFINISASYSPDSSQ----IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ LF + A Y D S +VF S R+ + Q+YV ++GS +R++ D++A++ P Sbjct: 73 TDPLFGDGPAHYDQDPSARGDVLVFTSLRDSARPQVYVRDADGS-VRRLTTDRDAAH--P 129 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKD-------GSQERLLVEDS-NLQAPTWSPSGRSL 404 SP G + F S E G +++D GS R L + N ++PTWSP G + Sbjct: 130 ELSPDGRTVVFD--SAEPGPGGTVQRDLWSVGVDGSDLRRLSDTPDNEESPTWSPDGTRI 187 Query: 405 IFSRKKDGDT--GSKLYSIDLNGRNETLI-NTPAY-ASDPQW 442 ++ DGDT G +++ + G T I + PA A++P W Sbjct: 188 AYA--CDGDTLRGWQIFEQAVAGGPRTRISDGPAGDATEPSW 227 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKR 340 D++SV + + RL++T S ++SPD ++I + D + Q++ G + R Sbjct: 154 DLWSVGVDGSDLRRLSDTPDNEESPTWSPDGTRIAYACDGDTLRGWQIFEQAVAGGPRTR 213 Query: 341 ISQDKEASYFDPVWSPQGD-----LIAFT 364 IS +P W+P D L+A+T Sbjct: 214 ISDGPAGDATEPSWNPVDDDARRGLVAYT 242 >gi|254388227|ref|ZP_05003463.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|197701950|gb|EDY47762.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1045 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 26/206 (12%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ ++ + I+ + + RLT F + S+SPD ++I F S+R Sbjct: 196 PVISPDGREVAMAAYRGGFFSIWVMRTDGSRLRRLTGGPFDDRGPSWSPDGTRIAFSSER 255 Query: 323 EG---------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--K 365 G ++ + Q+ +QD FDPVWS G + F + Sbjct: 256 GGDPVAGSPYRIWTVNVRDGGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGR 315 Query: 366 FSGEKF---AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F+ I + DG ++ E + NL P SP+GR+ + R G + Sbjct: 316 FTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRT-AWLRSVPGPARPET 374 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 ++ ++G L A A P+W+G Sbjct: 375 ITLFVDGEPVALDGDLAPAP-PRWIG 399 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSR 408 P SP G +AF + ++ ++ G R +V S +Q P W+P GR+LI++ Sbjct: 459 PQLSPDGRTVAFAALN----SLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTD 514 Query: 409 KKDG 412 +DG Sbjct: 515 DRDG 518 >gi|320162538|ref|YP_004175763.1| hypothetical protein ANT_31370 [Anaerolinea thermophila UNI-1] gi|319996392|dbj|BAJ65163.1| hypothetical protein ANT_31370 [Anaerolinea thermophila UNI-1] Length = 227 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 312 DSSQIVFESDREGKEQ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +S +IVF D +Y+M S+GS + R+S + + P WSP+ IAF +F+ Sbjct: 97 NSGKIVFSYDPRDAPSVGYGIYLMDSDGSHRLRLSAEDALTDSQPAWSPEHCRIAFVRFN 156 Query: 368 GEKF-AIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 E I +M D GS ++ + P WSP G + F +DG L+ +D+NG Sbjct: 157 HEGSDDIFLMSADGGSVLQITRHPARDTFPDWSPDGMQISFISDRDG--SRNLFVMDVNG 214 Query: 426 RN 427 + Sbjct: 215 EH 216 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 22/134 (16%) Query: 222 NQQKVAYATYDDEDILRV----YLMDTRIDRAPKRIGNFRSMILA--------PRFSSNG 269 N K+ + +YD D V YLMD+ G+ R + A P +S Sbjct: 97 NSGKIVF-SYDPRDAPSVGYGIYLMDSD--------GSHRLRLSAEDALTDSQPAWSPEH 147 Query: 270 KR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 R A + + + DI+ + + ++T + +SPD QI F SDR+G L Sbjct: 148 CRIAFVRFNHEGSDDIFLMSADGGSVLQITRHPARDTFPDWSPDGMQISFISDRDGSRNL 207 Query: 329 YVMQSNGSDQKRIS 342 +VM NG ++++ Sbjct: 208 FVMDVNGEHVRQLT 221 >gi|197123385|ref|YP_002135336.1| hypothetical protein AnaeK_2985 [Anaeromyxobacter sp. K] gi|196173234|gb|ACG74207.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. K] Length = 703 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 11/178 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP +G+ ++ + VD +T+ L ++ + ++ PD I + Sbjct: 496 APAVRRDGRTIAFWTREGGRTRLRVVDADGTGARVVTDALQLSGAPAWMPDGRSIAVGAI 555 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG 380 EG +L+ + +G + + + A DP W+P GDL+AFT G F + + DG Sbjct: 556 VEGAPRLFRVPLDGGEPAALVAEPSA---DPAWAPAGDLLAFTGADVGTTFPLRAVNADG 612 Query: 381 SQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDL-NGRNETLINTP 434 S R+ L + + P GRS+ R G+ K L ++DL +G + L+ P Sbjct: 613 SARRMPPLTLTRGARHVAFLPDGRSIAVLR---GEIRRKHLAAVDLASGASRPLVVLP 667 >gi|237715132|ref|ZP_04545613.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408917|ref|ZP_06085462.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294648224|ref|ZP_06725761.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294810023|ref|ZP_06768697.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444965|gb|EEO50756.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353128|gb|EEZ02223.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636412|gb|EFF54893.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294442869|gb|EFG11662.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1119 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ + SY +PVWSP G IAF Sbjct: 28 ARISPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS-------- 416 F + +M DG R L S + P T++P G+ + FS S Sbjct: 82 DRNGNFDLFIMPADGGAARRLTYHSASEIPSTFTPDGKYVFFSASIQDPASSALFPTGAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + + GR E ++ TPA Sbjct: 142 TELYKVPVAGGRTEQVLGTPA 162 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 104 Y-HSASEIPSTFTPDGKYVFFS 124 >gi|284925405|gb|ADC27757.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni IA3902] Length = 402 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A + +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVNVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|32265933|ref|NP_859965.1| translocation protein TolB [Helicobacter hepaticus ATCC 51449] gi|67461999|sp|Q7VJ16|TOLB_HELHP RecName: Full=Protein tolB; Flags: Precursor gi|32261982|gb|AAP77031.1| Acetyl esterase TolB [Helicobacter hepaticus ATCC 51449] Length = 419 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 27/375 (7%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 + G KV ++++ DL+ S F + N +S ++D+ +L +V K Sbjct: 45 DFGAKVLKMLAADLKVSGHFQVYDGS------VNKNSEVAYKDYADKKIDLLAQIKVSKS 98 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRIL 178 + L L+D+ K+I K + + + IAH + D+ I ++ R++ Sbjct: 99 -SNSLTGTISLYDINTSKRIYVKDYTENDVKRFPFIAHRMCIDVNSYIQAPSIEWMQRLV 157 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDIL 237 +S+ SG NS ++ + + +F Q+ + Y Y D IL Sbjct: 158 VLSQYTTSG---NSEILIADYTLTYQKVVVKGGLNIFPKWVDSKQESIYYTKYLDVPTIL 214 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 + L I++ G + + S NG+ ++S+ D+Y + +S RL Sbjct: 215 KHNLTTGHIEQLVGSEG----IAVVSDVSKNGENLILSLSPTALSDLYLYNTKSKNLRRL 270 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I++ + + +I+F SDR G +++M+ +G +++ + + Sbjct: 271 TNYSGIDVDGKFVNNEKEIIFVSDRLGYPNIFMMRLDGGGTEQVVLHGRN---NSAVTSN 327 Query: 358 GDLIAFT------KFSGEKFAIGVMK-KDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRK 409 G +T +F F + ++ GS R L Q P +S G ++++ + Sbjct: 328 GKYAVYTSRETNNEFGANTFNLYLISLAPGSNYIRRLTASGKNQMPKYSNDGGTIMYLKY 387 Query: 410 KDGDTGSKLYSIDLN 424 + + ID N Sbjct: 388 YKAQSALGIIRIDYN 402 >gi|88597176|ref|ZP_01100411.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218561793|ref|YP_002343572.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|32699721|sp|Q9PJ14|TOLB_CAMJE RecName: Full=Protein tolB; Flags: Precursor gi|88190237|gb|EAQ94211.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112359499|emb|CAL34283.1| putative TolB precursor protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926950|gb|EFV06312.1| tol-Pal system beta propeller repeat protein TolB [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 402 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A + +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVNVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|29346818|ref|NP_810321.1| putative Tricorn-like protease [Bacteroides thetaiotaomicron VPI-5482] gi|29338715|gb|AAO76515.1| putative Tricorn-like protease [Bacteroides thetaiotaomicron VPI-5482] Length = 1102 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 23/151 (15%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD +IVF K +Y + G +++ +ASY +PVWSP G IAF Sbjct: 28 ARISPDGKEIVFCY----KGDIYKVPVQGGTATQLTT--QASYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTG-- 415 F + +M DG R L S + P+ ++P G+ ++FS TG Sbjct: 82 DRNGNFDLFIMSADGGTARRLTYHSASEIPSAFTPDGKFVLFSASIQDPAQSALFPTGAM 141 Query: 416 SKLYSIDL-NGRNETLINTPAYASDPQWVGF 445 ++LY + + GR E ++ TPA +WV F Sbjct: 142 TELYKVPVTGGRTEQVLATPA-----EWVCF 167 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK + + D IY V +Q +LT + +SPD QI F SDR Sbjct: 29 RISPDGKEIVFCYKGD----IYKVPVQGGTATQLTTQASYEANPVWSPDGKQIAFASDRN 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G L++M ++G +R++ AS ++P G + F+ Sbjct: 85 GNFDLFIMSADGGTARRLTY-HSASEIPSAFTPDGKFVLFS 124 >gi|86149640|ref|ZP_01067870.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839908|gb|EAQ57167.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] Length = 402 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A + +G + L+++ Sbjct: 178 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVNVDGSKLLVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 237 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 296 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 297 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 351 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 352 KNLFPRFSSDGGSIVF 367 >gi|253572275|ref|ZP_04849678.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838050|gb|EES66138.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 877 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 23/151 (15%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD +IVF K +Y + G +++ +ASY +PVWSP G IAF Sbjct: 28 ARISPDGKEIVFCY----KGDIYKVPVQGGTATQLTT--QASYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTG-- 415 F + +M DG R L S + P+ ++P G+ ++FS TG Sbjct: 82 DRNGNFDLFIMPADGGTARRLTYHSASEIPSAFTPDGKFVLFSASIQDPAQSALFPTGAM 141 Query: 416 SKLYSIDL-NGRNETLINTPAYASDPQWVGF 445 ++LY + + GR E ++ TPA +WV F Sbjct: 142 TELYKVPVTGGRTEQVLATPA-----EWVCF 167 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK + + D IY V +Q +LT + +SPD QI F SDR Sbjct: 29 RISPDGKEIVFCYKGD----IYKVPVQGGTATQLTTQASYEANPVWSPDGKQIAFASDRN 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G L++M ++G +R++ AS ++P G + F+ Sbjct: 85 GNFDLFIMPADGGTARRLTY-HSASEIPSAFTPDGKFVLFS 124 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 41/154 (26%) Query: 260 ILAPRFSSNGKRALISVQKDEAM-----DIYSVDLQSNATERLTNTLFINISASYSPDSS 314 I RFS A +S + D++ T+++TNT S++PD+ Sbjct: 308 IATLRFSQGATSASVSPDGKQVAFIVRGDVFVTSTDYATTKQITNTPAKEAGVSFAPDNR 367 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +V+ S+R G QLY +I++ +EA++ P LI Sbjct: 368 TLVYASERTGNWQLYTA--------KIARKEEANF------PNATLI------------- 400 Query: 375 VMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIF 406 +E +L+ ++ P +SP G+ L F Sbjct: 401 -------EEEVLLPSKTIERAYPQYSPDGKELAF 427 >gi|254387973|ref|ZP_05003210.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|197701697|gb|EDY47509.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1069 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 28/174 (16%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ S +D +++V R T + + ++SPD ++I F S+R Sbjct: 98 PTHSPDGELVAFSAYRDGNHHLWTVRPDGTGLRRRTEGPWDDRGPAWSPDGTRIAFASER 157 Query: 323 EGKE------QLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFS 367 G +++V+ + R++ QD +DP WSP G I F + Sbjct: 158 GGDPATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQ 217 Query: 368 GEKFAIG---------VMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 G A G + G+ V D + AP +P GR L + R Sbjct: 218 GVTTATGPALDARTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLAYLR 271 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 25/164 (15%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVW 354 RLT N +AS +P ++ E + L+ + ++G ++ D E + P Sbjct: 49 RLTEA--TNGAASLAPGGGGLIAEV----QSTLWSLPADGGRATPLTPADLEPAR--PTH 100 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGD 413 SP G+L+AF+ + + ++ DG+ R E + + P WSP G + F+ ++ GD Sbjct: 101 SPDGELVAFSAYRDGNHHLWTVRPDGTGLRRRTEGPWDDRGPAWSPDGTRIAFASERGGD 160 Query: 414 --TGS--KLYSID-----------LNGRNETLINTPAYASDPQW 442 TG+ +++ +D L+G+ L + P DP W Sbjct: 161 PATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTW 204 >gi|302326672|gb|ADL25873.1| oxidoreductase, Gfo/Idh/MocA family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 668 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 261 LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 LAP + + +GK +++ + DIY++ RLT +N Y + I Sbjct: 480 LAPSYLHGITPDGKTLAYCAERNGSYDIYTIPAAGGNETRLTTAFGLNDGPEYDCNGEYI 539 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD---LIAFTK 365 F S+R G+ Q + M+++GS+Q +++ D + + P SP ++A+T+ Sbjct: 540 WFNSERSGRMQAFCMKADGSEQTQMTHDLHWNTWFPHISPDRQKVVMVAYTE 591 >gi|332668331|ref|YP_004451119.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] gi|332337145|gb|AEE54246.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] Length = 1075 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 30/199 (15%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 SSNGK + + ++ ++ T+R+TNT S S+SPD +++ S+R Sbjct: 329 SSNGKEVAFVFRGE----VFVTSVEGGVTKRITNTPEQERSVSFSPDGKALLYSSERGNS 384 Query: 326 EQLYVMQSNGSDQKR------------ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 ++Y + + S++ I KE + P +SP G IAF + ++ + Sbjct: 385 WKIYETKISRSEEPYFYASTLLKETPIIENTKEN--YQPEYSPDGKEIAFIE---DRMTL 439 Query: 374 GVMKKDGSQERLLVEDSNL-------QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 V Q R L+ D L Q +WSP G+ ++F G ++ I NG+ Sbjct: 440 KVYNIASKQTRTLLTDQELFSMGDNDQYFSWSPDGKWILFDYSVPGVPTGEIGIIASNGK 499 Query: 427 NETLINTPAYASD--PQWV 443 ++ + T + D P+W+ Sbjct: 500 SKVINLTESGFQDSRPKWI 518 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 29/185 (15%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN------ATERLTNTLFI- 303 KRI N + FS +GK L S ++ + IY + + A+ L T I Sbjct: 354 KRITNTPEQERSVSFSPDGKALLYSSERGNSWKIYETKISRSEEPYFYASTLLKETPIIE 413 Query: 304 ----NISASYSPDSSQIVFESDREGKEQLYVMQSNG-----SDQKRISQDKEASYFDPVW 354 N YSPD +I F DR ++Y + S +DQ+ S YF W Sbjct: 414 NTKENYQPEYSPDGKEIAFIEDRM-TLKVYNIASKQTRTLLTDQELFSMGDNDQYFS--W 470 Query: 355 SPQGDLIAFTKF-----SGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFS 407 SP G I F +GE IG++ +G + + + +S Q P W G+++++ Sbjct: 471 SPDGKWILFDYSVPGVPTGE---IGIIASNGKSKVINLTESGFQDSRPKWILGGKAMVWF 527 Query: 408 RKKDG 412 +DG Sbjct: 528 SNRDG 532 >gi|315929958|gb|EFV09112.1| tol-Pal system beta propeller repeat protein TolB [Campylobacter jejuni subsp. jejuni 305] Length = 404 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ +Q + Y T D D +Y D ++A K + + M++A + +G + L+++ Sbjct: 180 PKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSS-GGMVVASDVNVDGSKLLVTM 238 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYV--MQS 333 + D+Y DL + +LTN I+++ ++ D S++VF SDR G +++ + S Sbjct: 239 APKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSKVVFVSDRLGYPNIFMQDLNS 298 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 N ++Q ++ S D + ++ + F I +M + R L + Sbjct: 299 NSAEQVVFHGRNNSAV-----STYKDFLVYSSREPNQAGVFNIYLMSINSDYIRQLTANG 353 Query: 391 NLQAPTWSPSGRSLIF 406 P +S G S++F Sbjct: 354 KNLFPRFSSDGGSIVF 369 >gi|294666207|ref|ZP_06731461.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604025|gb|EFF47422.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 779 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 7/143 (4%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ S SPD + + + S DR G L N + + S P WSP G Sbjct: 228 DLTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQ 287 Query: 361 IAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IAF++ S S+E + + +++ + +WSP GR+L+F S Sbjct: 288 IAFSRQAPDGSCRVMIAAATGPAASREVVRCDGADMLSFSWSPDGRALVFGSMTGTHGAS 347 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 ++ +DL R ++ PA A D Sbjct: 348 RMRRLDLATRQWQALDYPAQAGD 370 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 13/225 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + P +S +G++ Sbjct: 229 LTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQI 288 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + + E + +S S+SPD +VF S G + Sbjct: 289 AFSRQAPDGSCRVMIAAATGPAASREVVRCDGADMLSFSWSPDGRALVFGSMTGTHGASR 348 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + + +A FD P +SP G+ I F + + + G ERL Sbjct: 349 MRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERL 408 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++++++ +W P G LIF R+ D + ++LY +DL R+ +L Sbjct: 409 THDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL--RDHSL 449 >gi|282890326|ref|ZP_06298854.1| hypothetical protein pah_c016o029 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499708|gb|EFB41999.1| hypothetical protein pah_c016o029 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 459 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 33/283 (11%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSE----SVVSGIIKNSLCVMDRDGANIRYLT 207 RK+ H I+D +Y+++ + G SR+L+ + S + + D DG N R LT Sbjct: 147 RKVMHQIADTLYKALFHQPGIATSRVLYTVKTPDRSTQEKKWISEIWEADYDGYNPRKLT 206 Query: 208 PSR--------DQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRS 258 + I +P FS + Y +Y + + + V ++ I R R+ R Sbjct: 207 THKTVGYCVTPSYIPAKPGFSSG--SMIYTSYKNGQPKIYVAQVNEGIGR---RLNYVRG 261 Query: 259 MILAPRFSSNGKRAL----ISVQKDEAMDIYSVDLQSNATER--LTNTLFINISASYSPD 312 L P S + + D + +S++ + R + + + ++SPD Sbjct: 262 NQLMPTVSPQRDQIAFICDVGGNPDLFIQPFSIEKGAEGKPRQIFSCGQSVQGTPTFSPD 321 Query: 313 SSQIVFESDREGKEQLYVMQSNGSD-------QKRISQDKEASYFDPVWSPQGDLIAFTK 365 +I F S+++G ++Y++ + K I++ S P WSP G IA++ Sbjct: 322 GKKIAFASNKDGSPRVYILDIPKENVLLKDIKPKLITKYSRES-TAPSWSPDGTKIAYSS 380 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFS 407 + I V +E+ + S + + P+WSP+ + LI++ Sbjct: 381 LTQGTRQIWVYDLRKQEEKQITFGSGHKENPSWSPNSKMLIYN 423 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 29/168 (17%) Query: 283 DIYSVDLQSNATERLTN--TLFINISASYSP-----DSSQIVFESDREGKEQLYVMQSNG 335 +I+ D +LT T+ ++ SY P S +++ S + G+ ++YV Q N Sbjct: 191 EIWEADYDGYNPRKLTTHKTVGYCVTPSYIPAKPGFSSGSMIYTSYKNGQPKIYVAQVNE 250 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFT------------KFSGEKFAIGVMKKDGSQE 383 +R++ + + P SPQ D IAF FS EK A +G Sbjct: 251 GIGRRLNYVR-GNQLMPTVSPQRDQIAFICDVGGNPDLFIQPFSIEKGA------EGKPR 303 Query: 384 RLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++ ++Q PT+SP G+ + F+ KDG ++Y +D+ N L Sbjct: 304 QIFSCGQSVQGTPTFSPDGKKIAFASNKDGS--PRVYILDIPKENVLL 349 >gi|261415324|ref|YP_003249007.1| oxidoreductase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371780|gb|ACX74525.1| oxidoreductase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 668 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 261 LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 LAP + + +GK +++ + DIY++ RLT +N Y + I Sbjct: 480 LAPSYLHGITPDGKTLAYCAERNGSYDIYTIPAAGGNETRLTTAFGLNDGPEYDCNGEYI 539 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD---LIAFTK 365 F S+R G+ Q + M+++GS+Q +++ D + + P SP ++A+T+ Sbjct: 540 WFNSERSGRMQAFCMKADGSEQTQMTHDLHWNTWFPHISPDRQKVVMVAYTE 591 >gi|294817520|ref|ZP_06776162.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|326446154|ref|ZP_08220888.1| hypothetical protein SclaA2_34047 [Streptomyces clavuligerus ATCC 27064] gi|294322335|gb|EFG04470.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1087 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 28/174 (16%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ S +D +++V R T + + ++SPD ++I F S+R Sbjct: 116 PTHSPDGELVAFSAYRDGNHHLWTVRPDGTGLRRRTEGPWDDRGPAWSPDGTRIAFASER 175 Query: 323 EGKE------QLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFS 367 G +++V+ + R++ QD +DP WSP G I F + Sbjct: 176 GGDPATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQ 235 Query: 368 GEKFAIG---------VMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 G A G + G+ V D + AP +P GR L + R Sbjct: 236 GVTTATGPALDARTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLAYLR 289 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 25/164 (15%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVW 354 RLT N +AS +P ++ E + L+ + ++G ++ D E + P Sbjct: 67 RLTEA--TNGAASLAPGGGGLIAEV----QSTLWSLPADGGRATPLTPADLEPAR--PTH 118 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGD 413 SP G+L+AF+ + + ++ DG+ R E + + P WSP G + F+ ++ GD Sbjct: 119 SPDGELVAFSAYRDGNHHLWTVRPDGTGLRRRTEGPWDDRGPAWSPDGTRIAFASERGGD 178 Query: 414 --TGS--KLYSID-----------LNGRNETLINTPAYASDPQW 442 TG+ +++ +D L+G+ L + P DP W Sbjct: 179 PATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTW 222 >gi|154148092|ref|YP_001406273.1| translocation protein TolB [Campylobacter hominis ATCC BAA-381] gi|153804101|gb|ABS51108.1| protein TolB [Campylobacter hominis ATCC BAA-381] Length = 417 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 8/210 (3%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+++ Q Y TY + + +I R M +A S +G + LI+ Sbjct: 195 PKWANKAQNAFYYTYYINKNTPAIFKYNLSNGSKSKIFTGRGMTIASDVSDDGSKLLITN 254 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + DI+ +L S + +++TN I+++ ++ + S+IVF SDR G ++ +G Sbjct: 255 APKDQPDIFLYNLNSGSMKQITNYPGIDVNGNFVDNDSRIVFVSDRLGYPNIFAQSIDGG 314 Query: 337 D-QKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 + ++ + Q K + S G+ I + ++ G F I ++ + R L D Sbjct: 315 NVEQMVFQGKN----NNSISTHGNYIVYSSRDGGGSFNIYLISTGTNLIRQLTADGKNMF 370 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P +S G S++F K + GS + I +N Sbjct: 371 PRFSSDGGSVMF--IKHSNFGSSIGIIRIN 398 >gi|148657636|ref|YP_001277841.1| peptidase S9 prolyl oligopeptidase [Roseiflexus sp. RS-1] gi|148569746|gb|ABQ91891.1| peptidase S9, prolyl oligopeptidase active site domain protein [Roseiflexus sp. RS-1] Length = 697 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 14/109 (12%) Query: 351 DPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP P G ++AF + + + AI + DG R N +P WSP GR L Sbjct: 21 DPQVCPDGRVVAFVRVTIDRPANANRRAIWIAPTDGGPPRRFTSGVNDTSPRWSPDGRWL 80 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGFM 446 F R + GD +LY I +G + + PA++ D +W+ F+ Sbjct: 81 AFVRGR-GDQTPQLYVIRRDGGESRCLTSLPQGVSHPAWSPDGRWIAFL 128 >gi|118589526|ref|ZP_01546931.1| hypothetical protein SIAM614_03780 [Stappia aggregata IAM 12614] gi|118437612|gb|EAV44248.1| hypothetical protein SIAM614_03780 [Stappia aggregata IAM 12614] Length = 276 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 13/137 (9%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 ++S+ L ++T Y+PD I F +R G QL+ ++ +GS +++++ Sbjct: 138 VFSIGLDGGEERQITREFDHCDGPDYTPDGKWIWFNGERAGSVQLWRVRPDGSCLQQMTK 197 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSG--------EKFAIGVMKKDGSQERLLVE----DSN 391 D+ ++F P SP G +A+ + + +M +G R+L+ Sbjct: 198 DERVNWF-PHPSPDGKSVAYLAYEAGTTGHPAERTVELRLMPAEGGSPRILLSLFGGQGT 256 Query: 392 LQAPTWSPSGRSLIFSR 408 L P+W+P R + R Sbjct: 257 LNVPSWAPDSRRFAYMR 273 >gi|170574759|ref|XP_001892951.1| WD40-like Beta Propeller Repeat family protein [Brugia malayi] gi|158601263|gb|EDP38222.1| WD40-like Beta Propeller Repeat family protein [Brugia malayi] Length = 693 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 26/168 (15%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ V+ RLTNT + + SPD +IVF S R G ++++M S+G++ ++++ Sbjct: 158 DIFKVNEFGTVITRLTNTAGYDAEGAVSPDGRKIVFTSLRSGDPEIWIMNSDGTEPEQLT 217 Query: 343 QDKEASYFDPVWSPQG--------------------DLIAFTKFSGEKFAIGVMKKDGSQ 382 D+ P +SP G DL+++ S + + + DGS Sbjct: 218 -DELGYDGGPFFSPDGSKIVFRASRPNTTERIQTYKDLLSYNLVSPLEMELYTINVDGSG 276 Query: 383 -ERLLVEDSNLQAPTWSPSGRSLIFS---RKKDGDTGS-KLYSIDLNG 425 +++ + AP + P R +IFS + G G+ LY ID G Sbjct: 277 LKKVTSLGGSNWAPFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEAG 324 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++ V+ N RLTNT + AS S D I+F S R G L++M +G + K+I Sbjct: 524 FELIKVNKYGNFIRRLTNTSGYDGEASISSDGKHIIFTSRRNGDPNLWIMDIDGKNAKQI 583 Query: 342 SQ 343 ++ Sbjct: 584 TK 585 >gi|23098536|ref|NP_692002.1| acylaminoacyl-peptidase [Oceanobacillus iheyensis HTE831] gi|22776762|dbj|BAC13037.1| acylaminoacyl-peptidase [Oceanobacillus iheyensis HTE831] Length = 667 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 259 MILAPRFS-SNGKRALISVQKDEAMD----IYSVDLQSNATERLTNTLFINISASYSPDS 313 ++ P ++ SN + +S + +E + +YS D+ +N T++ T N + +P + Sbjct: 18 ILSGPTYTASNNRFTYVSTKVNEDNEYESHVYSTDISTNQTKQWTFGKHSNTNFRINPSN 77 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +Q VF+S R G QL+++ +G + K+I+ ++ +Y P W+P G I F+ Sbjct: 78 TQAVFQSTRSGTSQLWLIDLDGGEPKQITFFQKGAY-SPRWAPDGSSIFFS 127 >gi|284040891|ref|YP_003390821.1| hypothetical protein Slin_6060 [Spirosoma linguale DSM 74] gi|283820184|gb|ADB42022.1| WD40 domain protein beta Propeller [Spirosoma linguale DSM 74] Length = 510 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 57/228 (25%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 +RD + P SPN+Q++A+ + + + L +Y+M+ N R + P Sbjct: 244 TRDGSNWRPVASPNRQQIAFISNVNTE-LHLYVMNANGT-------NIRQVTTVP----- 290 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 IS +Y DL S S+SPD +Q+++ S+ ++L Sbjct: 291 -----IS-------GLYQTDL----------------SFSWSPDGTQLLYPSN----DRL 318 Query: 329 YVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIA--FTKFSGEKFAIGVMKKDGSQERL 385 Y ++++G+ + +SQ F W+PQG+ IA T S I DGS +L Sbjct: 319 YAVRTDGTGLRVVSQASGGRVFAGCDWTPQGNRIAARTTGTSVYDNEITTFMADGSALKL 378 Query: 386 LVE--DSNLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLN 424 + + + P +S GR L+FS G ++LY +DLN Sbjct: 379 VYSQRSARVGNPAFSVDGRRLVFSADSSGFMNEQGRQLDARLYLLDLN 426 >gi|255548311|ref|XP_002515212.1| conserved hypothetical protein [Ricinus communis] gi|223545692|gb|EEF47196.1| conserved hypothetical protein [Ricinus communis] Length = 666 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFD--PVWSPQGDL 360 N S SPD +VF S R G + LY++ + G I Q E + D P WSP+GDL Sbjct: 462 NAFPSCSPDGESLVFRSGRSGHKNLYIIDAVEGEFNGGIRQLTEGPWIDTMPSWSPKGDL 521 Query: 361 IAFTKFSGEK-----FAIGVMKKDGS 381 IAF+ F+I V++ DGS Sbjct: 522 IAFSSNRHNPNNVNAFSIYVIRPDGS 547 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 31/161 (19%) Query: 308 SYSPDSSQIVFESD-REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK- 365 S+SPD + + F D + L V++SNGS + + +D+ A F WSP + FT Sbjct: 360 SFSPDGNLMAFNPDFVDSSGGLKVVKSNGSKRWTLIKDRVA--FCNSWSPTEKHVIFTSL 417 Query: 366 ---FSGEKFAIGV---------MKKDGSQ-----ERLLVEDSNLQA-PTWSPSGRSLIFS 407 F K + + +K D ++ + L ED+ A P+ SP G SL+F Sbjct: 418 GPIFESAKTTVQIARVTFKPSDLKSDHNEVSCDVKILTREDTGNNAFPSCSPDGESLVF- 476 Query: 408 RKKDGDTGSK-LYSID-----LNGRNETLINTPAYASDPQW 442 + G +G K LY ID NG L P + P W Sbjct: 477 --RSGRSGHKNLYIIDAVEGEFNGGIRQLTEGPWIDTMPSW 515 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 352 PVWSPQGDLIAFTK-FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 P +SP G+L+AF F + V+K +GS+ L++D +WSP+ + +IF+ Sbjct: 359 PSFSPDGNLMAFNPDFVDSSGGLKVVKSNGSKRWTLIKDRVAFCNSWSPTEKHVIFT 415 >gi|148273953|ref|YP_001223514.1| hypothetical protein CMM_2769 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831883|emb|CAN02853.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 312 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EGKEQLY 329 + + + +I+ V + T +LT+ F + A +SPD + F S+R G QL+ Sbjct: 154 LDARGEWTTNIHLVPVDGGPTTQLTDDGFPDDGAEFSPDGGWLYFNSERGSDLPGHAQLF 213 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 M+++G+D + + D+ ++F P SP G+ I + F Sbjct: 214 TMRTDGTDTHQFTSDERVNWF-PHPSPDGEHIVYLSF 249 >gi|289662098|ref|ZP_06483679.1| hypothetical protein XcampvN_03108 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 784 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 305 ISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDL 360 +S S+SPD +VF S G +L + + + +AS FD P +SP G Sbjct: 329 LSFSWSPDGRALVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHW 388 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I F + + + G+ ERL ++++++ +W P G LIF R+ D + ++LY Sbjct: 389 IVFVRNPQLGDLWRIPAQGGAAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYR 446 Query: 421 IDL 423 +DL Sbjct: 447 LDL 449 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ S SPD + + + S DR G L N + + +S P WSP G Sbjct: 233 DLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPAPGSSDRLPAWSPDGRE 292 Query: 361 IAFTKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IAF++ + + ++E + +++ + +WSP GR+L+F + Sbjct: 293 IAFSRQARDGVCRVMIAAATGPAAAREVARCDAADMLSFSWSPDGRALVFGSMTGTHGAA 352 Query: 417 KLYSIDL-NGRNETLINT---------PAYASDPQWVGFM 446 +L +DL G+ +TL + P Y+ D W+ F+ Sbjct: 353 RLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFV 392 >gi|311029453|ref|ZP_07707543.1| peptidase S9 prolyl oligopeptidase active site domain protein [Bacillus sp. m3-13] Length = 663 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY DL+ NA T+ S +SPD S++ F S+R K QLYVM NG + ++++ Sbjct: 47 IYVGDLEGNAVP-FTSGKGRATSPRWSPDGSKLAFVSNRNEKSQLYVMPVNGGEAEQVTF 105 Query: 344 DKEASYFDPVWSPQGDLIAFT 364 K + PVWSP G + F+ Sbjct: 106 CKNGAR-GPVWSPCGTKLLFS 125 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 V E + E + +YV G+ S A+ P WSP G +AF EK + VM Sbjct: 36 VHEEENEYRSTIYVGDLEGNAVPFTSGKGRAT--SPRWSPDGSKLAFVSNRNEKSQLYVM 93 Query: 377 KKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 +G + E++ + + P WSP G L+FS Sbjct: 94 PVNGGEAEQVTFCKNGARGPVWSPCGTKLLFS 125 >gi|268317283|ref|YP_003291002.1| WD40 domain-containing protein beta Propeller [Rhodothermus marinus DSM 4252] gi|262334817|gb|ACY48614.1| WD40 domain protein beta Propeller [Rhodothermus marinus DSM 4252] Length = 982 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGS 336 + + + +Y ++ + T L S ++SPD +++ F + D G LYV++ +G Sbjct: 375 EGDVLHLYDLEREELVTTYRFPGLVALYSPTWSPDGARLAFSAIDEGGWIDLYVLEVSGG 434 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTK---FSGEKFAIGVMKKD---GSQERLLVEDS 390 +R+++D DP WSP G + F G+++ + + D G +L Sbjct: 435 RLERLTRDLYDDR-DPAWSPDGRYLVFASDRTAWGDRYGMNLFLYDFNTGQIHQLTDGWR 493 Query: 391 NLQAPTWSPSGRSLIFS---RKKDGDTGSK 417 + P WSP GR ++F+ + DG G + Sbjct: 494 RDREPRWSPDGRYVVFASAVMEADGRFGPR 523 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 13/126 (10%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + +P +S +G R A ++ + +D+Y +++ ERLT L+ + ++SPD +VF Sbjct: 401 LYSPTWSPDGARLAFSAIDEGGWIDLYVLEVSGGRLERLTRDLYDDRDPAWSPDGRYLVF 460 Query: 319 ESDREGKEQLYVMQSNGSD--QKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIG 374 SDR Y M D +I Q + D P WSP G + FA Sbjct: 461 ASDRTAWGDRYGMNLFLYDFNTGQIHQLTDGWRRDREPRWSPDGRYVV--------FASA 512 Query: 375 VMKKDG 380 VM+ DG Sbjct: 513 VMEADG 518 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Query: 350 FDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 + P WSP G +AF+ G + V++ G + ERL + + + P WSP GR L+F+ Sbjct: 402 YSPTWSPDGARLAFSAIDEGGWIDLYVLEVSGGRLERLTRDLYDDRDPAWSPDGRYLVFA 461 Query: 408 --RKKDGD-TGSKLYSIDLN-GRNETLINTPAYASDPQW 442 R GD G L+ D N G+ L + +P+W Sbjct: 462 SDRTAWGDRYGMNLFLYDFNTGQIHQLTDGWRRDREPRW 500 >gi|270294523|ref|ZP_06200725.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275990|gb|EFA21850.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1090 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++I F K +Y + + G +++ +E+ P+WSP G IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPAKGGTATQLTT-QESYECTPIWSPDGKQIAFASDRYG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID------ 422 F + VM DG + L S + P T++P G+ ++FS S L+ Sbjct: 86 NFDVFVMPADGGTAQRLTTHSTGEIPSTFTPDGKYILFSASIQDPASSALFPTSAMTELY 145 Query: 423 ----LNGRNETLINTPAYA 437 GR E ++ TPA A Sbjct: 146 KVPATGGRTEQVLGTPAEA 164 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G ++VM ++G +R++ Sbjct: 44 DIYKVPAKGGTATQLTTQESYECTPIWSPDGKQIAFASDRYGNFDVFVMPADGGTAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 ++P G I F+ Sbjct: 104 THSTGE-IPSTFTPDGKYILFS 124 >gi|289668062|ref|ZP_06489137.1| hypothetical protein XcampmN_06068 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 784 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 305 ISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDL 360 +S S+SPD +VF S G +L + + + +AS FD P +SP G Sbjct: 329 LSFSWSPDGRALVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHW 388 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I F + + + G+ ERL ++++++ +W P G LIF R+ D + ++LY Sbjct: 389 IVFVRNPQLGDLWRIPAQGGAAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYR 446 Query: 421 IDL 423 +DL Sbjct: 447 LDL 449 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ S SPD + + + S DR G L N + + +S P WSP G Sbjct: 233 DLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPAPGSSDRLPAWSPDGRE 292 Query: 361 IAFTKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IAF++ + + ++E + +++ + +WSP GR+L+F + Sbjct: 293 IAFSRQARDGVCRVMIAAATGPAAAREVARCDGADMLSFSWSPDGRALVFGSMTGTHGAA 352 Query: 417 KLYSIDL-NGRNETLINT---------PAYASDPQWVGFM 446 +L +DL G+ +TL + P Y+ D W+ F+ Sbjct: 353 RLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFV 392 >gi|160891274|ref|ZP_02072277.1| hypothetical protein BACUNI_03723 [Bacteroides uniformis ATCC 8492] gi|317481149|ref|ZP_07940224.1| hypothetical protein HMPREF1007_03343 [Bacteroides sp. 4_1_36] gi|156859495|gb|EDO52926.1| hypothetical protein BACUNI_03723 [Bacteroides uniformis ATCC 8492] gi|316902645|gb|EFV24524.1| hypothetical protein HMPREF1007_03343 [Bacteroides sp. 4_1_36] Length = 1090 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++I F K +Y + + G +++ +E+ P+WSP G IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPAKGGTATQLTT-QESYECTPIWSPDGKQIAFASDRYG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID------ 422 F + VM DG + L S + P T++P G+ ++FS S L+ Sbjct: 86 NFDVFVMPADGGTAQRLTTHSTGEIPSTFTPDGKYILFSASIQDPASSALFPTSAMTELY 145 Query: 423 ----LNGRNETLINTPAYA 437 GR E ++ TPA A Sbjct: 146 KVPATGGRTEQVLGTPAEA 164 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G ++VM ++G +R++ Sbjct: 44 DIYKVPAKGGTATQLTTQESYECTPIWSPDGKQIAFASDRYGNFDVFVMPADGGTAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 ++P G I F+ Sbjct: 104 THSTGE-IPSTFTPDGKYILFS 124 >gi|60681997|ref|YP_212141.1| putative exported tricorn protease [Bacteroides fragilis NCTC 9343] gi|60493431|emb|CAH08217.1| putative exported tricorn protease [Bacteroides fragilis NCTC 9343] Length = 1077 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M + G + RI S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VDKEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF 318 + A S +G R +++ + + ++++ ++ T+ +T + + A +SPD +QI + Sbjct: 317 VTAASLSPDGARMVVTSRGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ + G + +++ + D WSP I + K + ++ Sbjct: 373 ISDATGETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSKKIVYMD---RKNRVNLLDV 429 Query: 379 DGSQERLLVEDSNLQAP---TWSPSGRSLIFSR 408 + LL++D + P T+SP L ++R Sbjct: 430 ASGKVSLLLQDP-VGVPGGVTFSPDSEWLTYTR 461 >gi|312130125|ref|YP_003997465.1| peptidase s41 [Leadbetterella byssophila DSM 17132] gi|311906671|gb|ADQ17112.1| peptidase S41 [Leadbetterella byssophila DSM 17132] Length = 1081 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 18/215 (8%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI--LRVYLMDTRIDRAPKRIGNFRSM 259 +I Y + +I+FE K+ + D+ + ++V ++ D P++ R Sbjct: 254 DIHYPSLGNGEIIFE-----QGGKLHLYSIKDKTVKTVQVQILSDMSDYMPRQESVDR-Y 307 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVF 318 I + S +GKRAL S + D ++S+ + LTNT I + YSP+ I F Sbjct: 308 IQSVSLSYDGKRALFSARGD----VFSLPTKEGVARNLTNTSGIAERTPEYSPNGKNIAF 363 Query: 319 ESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGV 375 SD G+ +LY+ S +K+++ + P WSP I F +GE F + Sbjct: 364 WSDESGEYELYLQSIEQPSTKKKLTSYGPGFKYTPYWSPDSKKICFIDQAGEIKVFDLST 423 Query: 376 MKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSR 408 + L+ N + WS R + +SR Sbjct: 424 QTTKKVDKLLIFSHGNTAGFSCEWSSDSRWIAYSR 458 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 25/189 (13%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P+FS +GK S D D+Y V + RLT+ + + ++ D +++F S R Sbjct: 67 PKFSPDGKEIAFSGNYDGNTDVYVVPVTGGTPRRLTSHGYQDRVVDWTVDGKEVIFASAR 126 Query: 323 EGKEQLY-----VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---------- 367 +Q Y V + G + K + E F SP G +A S Sbjct: 127 FSGKQRYNQFYKVKKEGGPESKLPLEYAEFGSF----SPDGSKMAVVYMSQVGRYWKRYK 182 Query: 368 -GEKFAIGVMK-KDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL- 423 G K I + KD + +R+ +D + P W SG L F + + L+S D Sbjct: 183 GGTKGTIQIYDFKDNTSKRISPQDGGGDEFPMW--SGDVLYFLSDRGKEERMNLWSYDTK 240 Query: 424 NGRNETLIN 432 G+ E L + Sbjct: 241 TGKTEQLTH 249 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ V ++L++ + +SPD +I F + +G +YV+ G +R Sbjct: 41 ANDLWLVPKTGGQAQKLSSPPGVETYPKFSPDGKEIAFSGNYDGNTDVYVVPVTGGTPRR 100 Query: 341 ISQDKEASYFDPV--WSPQGDLIAF--TKFSGEKFA---IGVMKKDGSQERLLVEDSNLQ 393 ++ Y D V W+ G + F +FSG++ V K+ G + +L +E + Sbjct: 101 LTSH---GYQDRVVDWTVDGKEVIFASARFSGKQRYNQFYKVKKEGGPESKLPLEYAEFG 157 Query: 394 APTWSPSGRSL 404 ++SP G + Sbjct: 158 --SFSPDGSKM 166 >gi|53713728|ref|YP_099720.1| putative protease [Bacteroides fragilis YCH46] gi|52216593|dbj|BAD49186.1| putative protease [Bacteroides fragilis YCH46] Length = 1077 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M + G + RI S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VDKEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 72/153 (47%), Gaps = 12/153 (7%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF 318 + A S +G R +++ + + ++++ ++ T+ +T + + A +SPD +QI + Sbjct: 317 VTAASLSPDGARMVVTSRGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ + G + + + + D WSP I + K + ++ Sbjct: 373 ISDATGETELYLQNAAGGEPMQFTHKNDTYIRDFKWSPDSKKIVYMD---RKNRVNLLDV 429 Query: 379 DGSQERLLVEDSNLQAP---TWSPSGRSLIFSR 408 + LL++D + P T+SP L ++R Sbjct: 430 ASGKVSLLLQDP-VGVPGGVTFSPDSEWLTYTR 461 >gi|265764053|ref|ZP_06092621.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256661|gb|EEZ28007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1077 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M + G + RI S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VDKEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 72/153 (47%), Gaps = 12/153 (7%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF 318 + A S +G R +++ + + ++++ ++ T+ +T + + A +SPD +QI + Sbjct: 317 VTAASLSPDGVRMVVTSRGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ + G + + + + D WSP I + K + ++ Sbjct: 373 ISDATGETELYLQNAAGGEPMQFTHKNDTYIRDFKWSPDSKKIVYMD---RKNRVNLLDV 429 Query: 379 DGSQERLLVEDSNLQAP---TWSPSGRSLIFSR 408 + LL++D + P T+SP L ++R Sbjct: 430 ASGKVSLLLQDP-VGVPGGVTFSPDSEWLTYTR 461 >gi|301163435|emb|CBW22986.1| putative exported tricorn protease [Bacteroides fragilis 638R] Length = 1077 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M + G + RI S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VDKEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF 318 + A S +G R +++ + + ++++ ++ T+ +T + + A +SPD +QI + Sbjct: 317 VTAASLSPDGVRMVVTSRGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ + G + +++ + D WSP I + K + ++ Sbjct: 373 ISDATGETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSKKIVYMD---RKNRVNLLDV 429 Query: 379 DGSQERLLVEDSNLQAP---TWSPSGRSLIFSR 408 + LL++D + P T+SP L ++R Sbjct: 430 ASGKVSLLLQDP-VGVPGGVTFSPDSEWLTYTR 461 >gi|145638707|ref|ZP_01794316.1| translocation protein TolB precursor [Haemophilus influenzae PittII] gi|145272302|gb|EDK12210.1| translocation protein TolB precursor [Haemophilus influenzae PittII] Length = 189 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 11/125 (8%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF--QDWNSLGAQVLVTGRVIKEGKD 122 +S++V+ DL+ S FN I+ Q +P S+ + W+++G +V G+V+ G + Sbjct: 54 ISKIVADDLRNSGKFNPIAVSQMPQ---HPTSVAEVNPEAWSNIGIDAIVIGQVVPSG-N 109 Query: 123 RLRVEFRLWDVKDRKQIIGKKF----FSSPASW-RKIAHTISDDIYQSITGEKGDFNSRI 177 + ++L D G ++ W R AHT+SD++++ +T +G F +RI Sbjct: 110 GYSITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRI 169 Query: 178 LFVSE 182 +V + Sbjct: 170 AYVVQ 174 >gi|295087746|emb|CBK69269.1| Periplasmic protease [Bacteroides xylanisolvens XB1A] Length = 1072 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD S+IVF K +Y + + G +++ + SY +PVWSP G IAF Sbjct: 7 SPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSPDGKQIAFASDRN 60 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F I +M DG R L S + P+ ++P G+ + FS S +L Sbjct: 61 GNFDIFIMPADGGAARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAMTEL 120 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 121 YKVPVAGGRTEQVLGTPA 138 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G +++M ++G +R++ Sbjct: 20 DIYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRNGNFDIFIMPADGGAARRLT 79 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 80 Y-HSASEIPSAFTPDGKYVFFS 100 >gi|253565676|ref|ZP_04843131.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945955|gb|EES86362.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 1077 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M + G + RI S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VDKEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF 318 + A S +G R +++ + + ++++ ++ T+ +T + + A +SPD +QI + Sbjct: 317 VTAASLSPDGARMVVTSRGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ + G + +++ + D WSP I + K + ++ Sbjct: 373 ISDATGETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSKKIVYMD---RKNRVNLLDV 429 Query: 379 DGSQERLLVEDSNLQAP---TWSPSGRSLIFSR 408 + LL++D + P T+SP L ++R Sbjct: 430 ASGKVSLLLQDP-VGVPGGVTFSPDSEWLTYTR 461 >gi|294141048|ref|YP_003557026.1| hypothetical protein SVI_2277 [Shewanella violacea DSS12] gi|293327517|dbj|BAJ02248.1| hypothetical protein [Shewanella violacea DSS12] Length = 703 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 66/271 (24%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-------- 263 ++ F SP+ + +AY D+ V L+D GN ++ IL Sbjct: 261 EVDFSLAISPDSKTLAYVGSDNARQTSVKLLDLN--------GNEKTHILYKCQDDCLYE 312 Query: 264 ----RFSSNGKRALISVQKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 FS +GK +IS DE D++ D+ E+LTN+ ++ PD +I+ Sbjct: 313 EVDVEFSPDGKHLVISRTLDEGFSEDLFLFDISKGELEQLTNSEGDIKGLAWHPDGDRII 372 Query: 318 FESDREGKEQLYVMQSNGSDQKRI-------------SQD-------------------- 344 F ++ G Y+ + ++ SQD Sbjct: 373 FSANVSGNRDGYIFSLKDKETTKLNIPGFSYPRFIPNSQDVIFHNWKELLSLSSLSLGGS 432 Query: 345 ----------KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQ 393 E SY P +SP + +AF + I + DG++ RL S+L Sbjct: 433 LATSPFPLIQSEYSYHSPHYSPAINKLAFISNESGSYEIWMSNLDGTERTRLTSLSSHLT 492 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P+WS G+ + F K + LY +++N Sbjct: 493 FPSWSHDGKYIAFLGPKTKSKINSLYVLNVN 523 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 10/143 (6%) Query: 303 INISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRI----SQDKEASYFDPVWSPQ 357 ++ S + SPDS + + SD + + ++ NG+++ I D D +SP Sbjct: 262 VDFSLAISPDSKTLAYVGSDNARQTSVKLLDLNGNEKTHILYKCQDDCLYEEVDVEFSPD 321 Query: 358 GDLIAFTKFSGEKFAIGVMKKD---GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 G + ++ E F+ + D G E+L + +++ W P G +IFS G+ Sbjct: 322 GKHLVISRTLDEGFSEDLFLFDISKGELEQLTNSEGDIKGLAWHPDGDRIIFSANVSGNR 381 Query: 415 GSKLYSIDLNGRNETLINTPAYA 437 ++S L + T +N P ++ Sbjct: 382 DGYIFS--LKDKETTKLNIPGFS 402 >gi|86159321|ref|YP_466106.1| WD-40-like beta propeller repeat-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775832|gb|ABC82669.1| WD-40 repeat-containing protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 704 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 11/178 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP +G+R ++ + VD +T+ L ++ + ++ PD + + + Sbjct: 497 APAVRRDGRRIAFWTREGGRTRLRVVDADGTGGRVVTDALQLSGAPAWMPDGASLAVGAI 556 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG 380 G +L+ + G + + A DP WSP GDL AFT G F + + DG Sbjct: 557 VNGAPRLFRVPLEGGAPAPLVAEPSA---DPAWSPAGDLFAFTGADVGTTFPLKAVNADG 613 Query: 381 SQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDL-NGRNETLINTP 434 S R+ L + + P GRS+ R G+ K L ++DL +G + LI P Sbjct: 614 SAHRMPPLTLTRGERHVAFLPGGRSIAVLR---GEIRRKHLAAVDLASGASRPLIVLP 668 >gi|297845140|ref|XP_002890451.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp. lyrata] gi|297336293|gb|EFH66710.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp. lyrata] Length = 703 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%) Query: 282 MDIYSVDL----QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +DI ++++ S A ++LT T N SPD +IVF S R G + LY+M + + Sbjct: 466 IDILAINVDAPNPSTAVKKLTTTGENNAFPWPSPDGKRIVFRSSRSGTKNLYIMDAEKGE 525 Query: 338 QKRISQDKEASYFDPV--WSPQGDLIAFT---KFSGEKFA-IGVMKKDGSQERLLVEDSN 391 + + ++ D + WSP G+ I F +F G I V+ DG+ R L + N Sbjct: 526 SGGLFRLTNGNWNDTIATWSPDGNWIVFASNREFPGTLLMNIYVVHPDGTGLRKLAQ--N 583 Query: 392 LQA-----PTWSPSGRSLIFSRKKDGDTG------------SKLYSIDLNGRNET-LINT 433 L P +SP + ++F+ G + S++++++L+G T L + Sbjct: 584 LTGGVSMHPMFSPDSKRIVFTTIYAGISAEQIGNPHFNVPSSEIFTVNLDGSGMTRLTHN 643 Query: 434 PAYASDPQW 442 P W Sbjct: 644 SVEDGPPMW 652 >gi|262384205|ref|ZP_06077341.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295103|gb|EEY83035.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1077 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGSEIVFSY----AGDLYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M S+G + RI S+D P W+P G+ I + F Sbjct: 85 DGNTEVYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ + + K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLYTVN--KEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 I + S G+R +++ + + ++++ + T+ +T T + A +SPD I + Sbjct: 317 ITSASLSPKGERMVVTARGE----VFNIPVDKGVTKNITRTPGAHERDAQWSPDGKHIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ S G + +++++ + WSP I +T + V K Sbjct: 373 ISDATGETELYLQDSEGGEPIQLTKNNDTYIRTFQWSPDSKKIVYTDRKNRINLLDVSNK 432 Query: 379 DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 + + LL E N+ ++SP L +SR D + S +Y D+ G+ E + Sbjct: 433 QLTTISQSLLGEARNV---SFSPDNNWLTYSRVSDNNF-SIVYVYDIAGKKEYPVTDKWY 488 Query: 433 ---TPAYASDPQWVGF 445 +P +++D +++ F Sbjct: 489 ESYSPVFSTDGKYLVF 504 >gi|226225661|ref|YP_002759767.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] gi|226088852|dbj|BAH37297.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] Length = 691 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 62/198 (31%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 +SPD +Q+VF SDREG QL+ MQ KR++ WSP G IAFT Sbjct: 99 WSPDGTQLVFRSDREGGAQLWTMQVASGALKRLTSVARGP-LGAAWSPDGKQIAFTSLVP 157 Query: 367 -------------SGEKFAIG-------VMKKDGSQE------RLLVED----------- 389 +G +A + + DG+ E +L V D Sbjct: 158 EPALSIAQQIAPPAGATWAPPARAFDKLIYRFDGAGELERGWSQLFVVDVASGTTRQLTK 217 Query: 390 ----------SNLQAPTWSPSGRSLIFSRKKDGD-----TGSKLYSID-LNGRNETLI-- 431 P+WSP G++++ S + D T +++ ++D ++G L Sbjct: 218 GAYHVGGGNGRGSGVPSWSPDGKTILISANRRPDYEIESTDTEVMAVDVVSGDVRALTTR 277 Query: 432 ----NTPAYASDPQWVGF 445 N P + D QW+ F Sbjct: 278 FGPDNRPMMSPDGQWIAF 295 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/284 (22%), Positives = 111/284 (39%), Gaps = 65/284 (22%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L ++ DG+ R L P ++ PR+SP+ ++ + + D E +++ M A K Sbjct: 74 TLWTVNADGSAHRQLLPGSNET--APRWSPDGTQLVFRS-DREGGAQLWTMQV-ASGALK 129 Query: 252 RIGNFRSMILAPRFSSNGKR-ALISVQKDEAMDI-------------------------- 284 R+ + L +S +GK+ A S+ + A+ I Sbjct: 130 RLTSVARGPLGAAWSPDGKQIAFTSLVPEPALSIAQQIAPPAGATWAPPARAFDKLIYRF 189 Query: 285 -------------YSVDLQSNATERLTNTLF--------INISASYSPDSSQIVFESDRE 323 + VD+ S T +LT + + S+SPD I+ ++R Sbjct: 190 DGAGELERGWSQLFVVDVASGTTRQLTKGAYHVGGGNGRGSGVPSWSPDGKTILISANRR 249 Query: 324 GKEQLYVMQSNGSDQKRISQDKEA--SYFDP----VWSPQGDLIAFTKFSGEKFA----- 372 ++ + +S D A + F P + SP G IAFT + + Sbjct: 250 PDYEIESTDTEVMAVDVVSGDVRALTTRFGPDNRPMMSPDGQWIAFTGYDDRRLGYQNHE 309 Query: 373 IGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDT 414 + VM+ DGS R L D ++ +P W+P R L +G+T Sbjct: 310 LYVMRADGSARRSLTASYDRSVGSPVWAPDSRGLYVELNNEGET 353 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + DGS R L+ SN AP WSP G L+F ++G G++L+++ + Sbjct: 77 TVNADGSAHRQLLPGSNETAPRWSPDGTQLVFRSDREG--GAQLWTMQV 123 >gi|83945234|ref|ZP_00957583.1| putative exported tricorn protease [Oceanicaulis alexandrii HTCC2633] gi|83851404|gb|EAP89260.1| putative exported tricorn protease [Oceanicaulis alexandrii HTCC2633] Length = 1093 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 13/213 (6%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 +IR++ ++FE + VA + +RV L AP R N S I Sbjct: 261 DIRWMDSDGQTLVFEAGGRLKRYDVATGQVSE---IRVSLNADLPQLAP-RWENAASTIQ 316 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFES 320 + S G+RALI+ + + ++SV L +T +++T + +A +SPD +++ + + Sbjct: 317 SAALSPTGQRALITARGE----VFSVPLDEGSTRNVSSTSGVREYTAIWSPDGNRVAYIT 372 Query: 321 DREGKEQLYVMQSNGSDQKR---ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 D G +QL V+ G + R + +++ YF W+P+ + I +T + + + Sbjct: 373 DAGGAQQLTVVDQRGFESPRTLSLGGAEDSFYFLQSWTPETNRIVYTDHLLNLYVLNLET 432 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 ++ V S + SP GR L ++ ++ Sbjct: 433 GRSTRVATEVRRSGFETAV-SPDGRWLAYTLEQ 464 >gi|212634939|ref|YP_002311464.1| transcriptional regulator [Shewanella piezotolerans WP3] gi|212556423|gb|ACJ28877.1| Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 699 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-GKEQLYVM----QSNGSDQKR 340 S L++ ER+TN + A+ SPD + F+ RE K Q+Y+ +S Q Sbjct: 160 SSQLEALTVERITNFEGVEEQAAISPDGRFMAFQWRRELKKAQIYIKDLTDKSAPLRQVS 219 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLL----VEDSNLQAP 395 +S+DKE S P WSP G +A+ F+ + + V + +Q+RL+ + + Sbjct: 220 MSEDKETS---PTWSPDGQALAYFSFNASGQCELHVRELITNQDRLIDTGCTSSGYVHSL 276 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYS 420 WSP G+ L +++ + YS Sbjct: 277 DWSPDGKFLAYAKAGEASVAIYAYS 301 >gi|255015923|ref|ZP_05288049.1| putative exported tricorn protease [Bacteroides sp. 2_1_7] Length = 1077 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGSEIVFSY----AGDLYKVQATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M S+G + RI S+D P W+P G+ I + F Sbjct: 85 DGNTEVYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ + + K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLYTVN--KEGGLSEVVPLPEGGFC--SYSPDGKQLAYNR 182 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 I + S G+R +++ + + ++++ + T+ +T T + A +SPD I + Sbjct: 317 ITSASLSPKGERMVVTARGE----VFNIPVDKGVTKNITRTPGAHERDAQWSPDGKHIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ S G + +++++ + WSP I +T + V K Sbjct: 373 ISDATGETELYLQDSEGGEPTQLTKNNDTYIRTFQWSPDSKKIVYTDRKNRINLLDVSNK 432 Query: 379 DGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 + + LL E N+ ++SP L +SR D + S +Y D+ G+ E + Sbjct: 433 QLTNISQSLLGEARNV---SFSPDNNWLTYSRVSDNNF-SIVYVYDIAGKKEYPVTDKWY 488 Query: 433 ---TPAYASDPQWVGF 445 +P +++D +++ F Sbjct: 489 ESYSPVFSTDGKYLVF 504 >gi|220917293|ref|YP_002492597.1| WD40 domain protein beta Propeller [Anaeromyxobacter dehalogenans 2CP-1] gi|219955147|gb|ACL65531.1| WD40 domain protein beta Propeller [Anaeromyxobacter dehalogenans 2CP-1] Length = 1077 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + + AP S +G+R +Q+ D+ + + R+T+ ++ +++PD ++ Sbjct: 500 AQVFAPAPSPDGRRIAFELQEGGRRDL--ALWEDDEVRRITDDDALDTGPAWTPDGRYLL 557 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G LY ++ ++++ + E F P SP G I F F E + + + Sbjct: 558 FASDRGGVYDLYAWEAATGAIRKVT-NVETGAFQPAVSPDGRTIGFVTFGREGYDVATIP 616 Query: 378 KDGS 381 D S Sbjct: 617 FDPS 620 >gi|89071212|ref|ZP_01158398.1| hypothetical protein OG2516_13911 [Oceanicola granulosus HTCC2516] gi|89043254|gb|EAR49482.1| hypothetical protein OG2516_13911 [Oceanicola granulosus HTCC2516] Length = 272 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 24/210 (11%) Query: 219 FSPNQQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 SP+ ++A + + VY + T ++ P++ + +S +G + Sbjct: 70 LSPDGTRLAISDHSQHGKSSVYTLPVSGGTPVEVTPRQPSWWHG------WSPDGGAIVY 123 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIVFESDREGKEQLYVMQS 333 + +D + E T F + +S D + + F +R+G L+ ++ Sbjct: 124 AAARDGGPVAPYIAPLEGGEELCLATGFDHCDGPDFSADGAWVWFNGERDGSVDLWRVRP 183 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERL 385 +G D +R++ +F P SP G + + + G A+ +M +DG R Sbjct: 184 DGRDLQRMTDGDSVDWF-PHPSPDGAHVVWLAYPPGTQGHPGGLDVALWLMPQDGGAGRE 242 Query: 386 LVE----DSNLQAPTWSPSGRSLIFSRKKD 411 LV + P+W+P GR F R D Sbjct: 243 LVRLHGGQGTINVPSWAPDGRRFAFVRYAD 272 >gi|325926634|ref|ZP_08187948.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas perforans 91-118] gi|325542986|gb|EGD14435.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas perforans 91-118] Length = 779 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 13/225 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ +VAYA+ + L+ T + P+ + + P +S +G++ Sbjct: 229 LTPSLSPDGARVAYASLTRDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQI 288 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + + E + +S S+SPD +VF S G + Sbjct: 289 AFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGTHGAAR 348 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + + +A FD P +SP G+ I F + + + G ERL Sbjct: 349 MRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERL 408 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++++++ +W P G LIF R+ D + ++LY +DL R+ +L Sbjct: 409 THDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL--RDHSL 449 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQG 358 +++ S SPD +++ + S DR G L N R+ + D P WSP G Sbjct: 228 DLTPSLSPDGARVAYASLTRDRTGTSILVKTTDNA--YPRVLETPAPGVSDRLPAWSPDG 285 Query: 359 DLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 IAF++ S S+E + + +++ + +WSP GR+L+F Sbjct: 286 RQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGTHG 345 Query: 415 GSKLYSIDLNGRNETLINTPAYASD 439 +++ +DL ++ PA A D Sbjct: 346 AARMRRLDLATGQWQTLDYPAQAGD 370 >gi|221209643|ref|ZP_03582624.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD1] gi|221170331|gb|EEE02797.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD1] Length = 675 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 5/89 (5%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----KEQLYVMQSN 334 D + ++++D Q+ A+ RLT F A +SPD +I F R+G + ++V+ ++ Sbjct: 171 DTEIHLHTIDAQTGASRRLTRGSFEVSEADWSPDGKRIAFTRTRDGRFAHRTDVWVVDAD 230 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAF 363 G + ++++ ++ F P WSP G IA Sbjct: 231 GGNARQLTSTIASAAF-PRWSPDGRFIAL 258 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 17/217 (7%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR--AL 273 PR+ P +Q +A+ + D +++ + T A + + + S +++ +S +GK+ AL Sbjct: 68 HPRWCPGEQALAFLS-DRGSGRQIHAIRTDGGEA-RCVTDLPSGVMSFEWSPDGKQLLAL 125 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 ++ D + D A +R + + Y D ++ + L+ + + Sbjct: 126 CTISVDPEQRGNTQDDSDEAADRPADAPRVVWRLPYKLDGVGYTLDT----EIHLHTIDA 181 Query: 334 NGSDQKRISQDK-EASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKKDGSQERLLVE 388 +R+++ E S D WSP G IAFT+ +FA + V+ DG R L Sbjct: 182 QTGASRRLTRGSFEVSEAD--WSPDGKRIAFTRTRDGRFAHRTDVWVVDADGGNARQLTS 239 Query: 389 D-SNLQAPTWSPSGRSL-IFSRKKDGDTGSKLYSIDL 423 ++ P WSP GR + + + DGD L+ D+ Sbjct: 240 TIASAAFPRWSPDGRFIALIGSEHDGDAQMHLWLHDV 276 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 21/245 (8%) Query: 210 RDQILFEPRFSPNQQKVAYATYD-DEDILRVYLMDTRID--RAPKRIGNFRSMILAPRFS 266 RD + + RF + +T D D D R L +D R P+++ F + PR+ Sbjct: 14 RDIVDLQCRFEGDLAVCELSTPDRDADDYRSALWLVCVDGSRPPRQL-TFGNADSHPRWC 72 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV----FESDR 322 + + I+++ +T+ +S +SPD Q++ D Sbjct: 73 PGEQALAFLSDRGSGRQIHAIRTDGGEARCVTDLPSGVMSFEWSPDGKQLLALCTISVDP 132 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS-P-QGDLIAFTKFSGEKFAIGVMKKDG 380 E + N D + D+ A VW P + D + +T E + + G Sbjct: 133 E-------QRGNTQDDSDEAADRPADAPRVVWRLPYKLDGVGYT-LDTEIHLHTIDAQTG 184 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGRN-ETLINTPAYA 437 + RL + WSP G+ + F+R +DG + ++ +D +G N L +T A A Sbjct: 185 ASRRLTRGSFEVSEADWSPDGKRIAFTRTRDGRFAHRTDVWVVDADGGNARQLTSTIASA 244 Query: 438 SDPQW 442 + P+W Sbjct: 245 AFPRW 249 >gi|325915282|ref|ZP_08177602.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas vesicatoria ATCC 35937] gi|325538475|gb|EGD10151.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas vesicatoria ATCC 35937] Length = 781 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 11/222 (4%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ ++ L+ T + P+ + I P +S +G+ Sbjct: 231 LTPSLSPDGSMVAYASLTNDRPGTSILVKTTDNAYPRVLETPAPGISDRLPAWSPDGREI 290 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + +S A E + +S S+SPD ++F S G + Sbjct: 291 AFSRQAPDGSCRIMIAAAAGESAAREVVRCDGADMLSFSWSPDGRALLFGSMTGARGAPR 350 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + +S + + + FD P +SP G I F + + + GS ERL Sbjct: 351 IRRLDLETGQWHALSYNAQPADFDYAPRYSPDGQWIVFLRNPQLGDLWRIPAQGGSAERL 410 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 ++++++ +W P G SL+F R+ D + ++LY +DL R+ Sbjct: 411 THDNADIRGWSWLPDGSSLVFGRRVDSE--ARLYRLDLVDRS 450 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 23/163 (14%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQG 358 +++ S SPD S + + S DR G L N R+ + D P WSP G Sbjct: 230 DLTPSLSPDGSMVAYASLTNDRPGTSILVKTTDNA--YPRVLETPAPGISDRLPAWSPDG 287 Query: 359 DLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS------- 407 IAF++ S + ++E + + +++ + +WSP GR+L+F Sbjct: 288 REIAFSRQAPDGSCRIMIAAAAGESAAREVVRCDGADMLSFSWSPDGRALLFGSMTGARG 347 Query: 408 ----RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 R+ D +TG + +++ N + P Y+ D QW+ F+ Sbjct: 348 APRIRRLDLETG-QWHALSYNAQPADFDYAPRYSPDGQWIVFL 389 >gi|284046037|ref|YP_003396377.1| Periplasmic component of the Tol biopolymer transport system-like protein [Conexibacter woesei DSM 14684] gi|283950258|gb|ADB53002.1| Periplasmic component of the Tol biopolymer transport system-like protein [Conexibacter woesei DSM 14684] Length = 305 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 18/167 (10%) Query: 263 PRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P FS +G + A + ++ DL RLT S ++S I FE D Sbjct: 131 PVFSPSGTQLAFDAGPSAGGQQLWISDLFGGGARRLTGR--GGRSPAWS-TRGTIAFERD 187 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 QLY ++ +GS +R++ + P WSP G +AF + + VM DGS Sbjct: 188 ----GQLYAIRPDGSGLRRLTGRGGRA---PAWSPHGTKLAFVRRRADLLY--VMNADGS 238 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 R + +++ WSP GR L++ G + +I +GR E Sbjct: 239 GLRQVRGPRGVESVRWSPDGRRLVYEAFDAG-----VLTIGTDGRGE 280 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 17/185 (9%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 L P+R P FSP+ ++A+ ++++ D A + G +P + Sbjct: 120 LLPARGLNSGRPVFSPSGTQLAFDAGPSAGGQQLWISDLFGGGARRLTGRGGR---SPAW 176 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S+ G I+ ++D +Y++ + RLT + ++SP +++ F R Sbjct: 177 STRGT---IAFERDG--QLYAIRPDGSGLRRLTGR--GGRAPAWSPHGTKLAFVRRR--A 227 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + LYVM ++GS +++ + WSP G + + F IG DG ER Sbjct: 228 DLLYVMNADGSGLRQVRGPRGVESVR--WSPDGRRLVYEAFDAGVLTIGT---DGRGERQ 282 Query: 386 LVEDS 390 LV+D+ Sbjct: 283 LVQDA 287 >gi|261868863|gb|ACY02040.1| putative tricorn-like protease [Flammeovirga yaeyamensis] Length = 1080 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 24/156 (15%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK ++ D ++ T ++TNT S S+SPD +V+ +R+G Sbjct: 322 SPNGKEVAFILRGD----VFVTSTDYRTTVQITNTPEQERSVSFSPDGRSLVYAGERDGS 377 Query: 326 EQLYVMQSNGSD----------QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +Y + D Q+ I + A F P WSP+GD IA+ + E+ + V Sbjct: 378 WNIYQAKLGNEDELYFINATDIQEEIVTAEPAEEFQPKWSPKGDAIAYLE---ERTTLKV 434 Query: 376 MKKDGSQERLLVEDS-------NLQAPTWSPSGRSL 404 + + +++++ + QA WSP G+ L Sbjct: 435 INLETKAKKVILPGTFNYSYSDGDQAFDWSPDGKYL 470 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S SPD + I F + +YV+ ++G + K I+ A F PVW+P IAF Sbjct: 29 SISPDGTHIAFAYQGD----VYVVPTSGGEAKAITT-HVAYDFSPVWAPDSKHIAFASDR 83 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS---------K 417 F + + DG + L +S + P +++P G+ ++++ + D S + Sbjct: 84 HGNFDLFLTTVDGGHPQRLTYNSTSEIPSSFTPDGKHVLYTAQILDDVKSAQFPYGRLGE 143 Query: 418 LYSIDLNG-RNETLINTPA 435 LYS+ + G R E ++ A Sbjct: 144 LYSVSVGGDRPEQVLTITA 162 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + Q D +Y V + +T + + S ++PDS I F SDR Sbjct: 28 PSISPDGTHIAFAYQGD----VYVVPTSGGEAKAITTHVAYDFSPVWAPDSKHIAFASDR 83 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G L++ +G +R++ + S ++P G + +T Sbjct: 84 HGNFDLFLTTVDGGHPQRLTYN-STSEIPSSFTPDGKHVLYT 124 >gi|256841886|ref|ZP_05547392.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736780|gb|EEU50108.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1079 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 31 RFPATNGSEIVFSY----AGDLYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQY 86 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M S+G + RI S+D P W+P G+ I + F Sbjct: 87 DGNTEVYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGF 146 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ + + K+ G E + + + ++SP G+ L ++R Sbjct: 147 SGKLYTVN--KEGGLSEVVPLPEGGFC--SYSPDGKQLAYNR 184 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 I + S G+R +++ + + ++++ + T+ +T T + A +SPD I + Sbjct: 319 ITSASLSPKGERMVVTARGE----VFNIPVDKGVTKNITRTPGAHERDAQWSPDGKHIAY 374 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ S G + +++++ + WSP I +T + V K Sbjct: 375 ISDATGETELYLQDSEGGEPTQLTKNNDTYIRTFQWSPDSKKIVYTDRKNRINLLDVSNK 434 Query: 379 DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 + + LL E N+ ++SP L +SR D + S +Y D+ G+ E + Sbjct: 435 QLTTISQSLLGEARNV---SFSPDNNWLTYSRVSDNNF-SIVYVYDIAGKKEYPVTDKWY 490 Query: 433 ---TPAYASDPQWVGF 445 +P +++D +++ F Sbjct: 491 ESYSPVFSTDGKYLVF 506 >gi|156742759|ref|YP_001432888.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] gi|156234087|gb|ABU58870.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] Length = 1117 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 15/175 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++V RLT S + SPD + + F EG +++VM + G + +R++ Sbjct: 24 DLWTVPASGGVARRLTANPGSVQSPALSPDGALLAFVGRDEGPGEVFVMPAEGGEARRLT 83 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPTWS 398 A+ W G I F + F+ + ++ DG + RLL + ++ Sbjct: 84 F-LGATMRVCGWGRNGREILFASSASLPFSRMALLYAIRADGGEPRLLPTGPAVTI-SYG 141 Query: 399 PSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P+G ++I + R + G TG D G LI P + P WVG Sbjct: 142 PTGGAVIGRNESDPARWKRYRGGRTGDVWIDPDGTGEWRRLIALPGNIAIPLWVG 196 >gi|298376894|ref|ZP_06986848.1| exported tricorn protease [Bacteroides sp. 3_1_19] gi|298265878|gb|EFI07537.1| exported tricorn protease [Bacteroides sp. 3_1_19] Length = 1077 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGSEIVFSY----AGDLYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M S+G + RI S+D P W+P G+ I + F Sbjct: 85 DGNTEVYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ + + K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLYTVN--KEGGLSEVVPLPEGGFC--SYSPDGKQLAYNR 182 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 I + S G+R +++ + + ++++ + T+ +T T + A +SPD I + Sbjct: 317 ITSASLSPKGERMVVTARGE----VFNIPVDKGVTKNITRTPGAHERDAQWSPDGKHIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ S G + +++++ + WSP I +T + V K Sbjct: 373 ISDATGETELYLQDSEGGEPTQLTKNNDTYIRTFQWSPDSKKIVYTDRKNRINLLDVSNK 432 Query: 379 DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 + + LL E N+ ++SP L +SR D + S +Y D+ G+ E + Sbjct: 433 QLTTISQSLLGEARNV---SFSPDNNWLTYSRVSDNNF-SIVYVYDIAGKKEYPVTDKWY 488 Query: 433 ---TPAYASDPQWVGF 445 +P +++D +++ F Sbjct: 489 ESYSPVFSTDGKYLVF 504 >gi|150009318|ref|YP_001304061.1| putative exported tricorn protease [Parabacteroides distasonis ATCC 8503] gi|301311118|ref|ZP_07217047.1| putative exported tricorn protease [Bacteroides sp. 20_3] gi|149937742|gb|ABR44439.1| putative exported tricorn protease [Parabacteroides distasonis ATCC 8503] gi|300831181|gb|EFK61822.1| putative exported tricorn protease [Bacteroides sp. 20_3] Length = 1077 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V +RLT+ + + +SPD I F Sbjct: 29 RFPATNGSEIVFSY----AGDLYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M S+G + RI S+D P W+P G+ I + F Sbjct: 85 DGNTEVYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ + + K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLYTVN--KEGGLSEVVPLPEGGFC--SYSPDGKQLAYNR 182 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 I + S G+R +++ + + ++++ + T+ +T T + A +SPD I + Sbjct: 317 ITSASLSPKGERMVVTARGE----VFNIPVDKGVTKNITRTPGAHERDAQWSPDGKHIAY 372 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD G+ +LY+ S G + +++++ + WSP I +T + V K Sbjct: 373 ISDATGETELYLQDSEGGEPTQLTKNNDTYIRTFQWSPDSKKIVYTDRKNRINLLDVSNK 432 Query: 379 DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 + + LL E N+ ++SP L +SR D + S +Y D+ G+ E + Sbjct: 433 QLTTISQSLLGEARNV---SFSPDNNWLTYSRVSDNNF-SIVYVYDIAGKKEYPVTDKWY 488 Query: 433 ---TPAYASDPQWVGF 445 +P +++D +++ F Sbjct: 489 ESYSPVFSTDGKYLVF 504 >gi|73670805|ref|YP_306820.1| hypothetical protein Mbar_A3367 [Methanosarcina barkeri str. Fusaro] gi|72397967|gb|AAZ72240.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 557 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 308 SYSPDSSQIVFESDREGKEQL--YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SPD +I+F + L YV +GS+ K E + + W P G L+ Sbjct: 252 SLSPDRKKIMFAAGSSDSYNLQTYVSNIDGSNLKGNISYNENLWANESWQPNGSLL---- 307 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + +++ D + +RLL + N W P G+ ++F + G+KLYSID++G Sbjct: 308 LVNQNRNLYIVEGDENNKRLLYK-GNASESQWFPDGKKILFV-----ENGNKLYSIDIDG 361 Query: 426 RNETLINTPAYASDPQWVGF 445 N T I S W F Sbjct: 362 TNITFITNFGQTSSNTWKYF 381 >gi|268316601|ref|YP_003290320.1| WD40 domain-containing protein [Rhodothermus marinus DSM 4252] gi|262334135|gb|ACY47932.1| WD40 domain-containing protein [Rhodothermus marinus DSM 4252] Length = 379 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 29/213 (13%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + YD DI Y+ DT P+ + S +G+ + + + + Sbjct: 142 EGRYVWPVYDTYDI---YITDT-TGAEPELLIGGPGYDAEATVSPDGRYVVFTSSRTGDL 197 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--------------- 327 +++ DLQ+ +LT+ L + A +SPD S+IV+ + R E Sbjct: 198 ELWRYDLQTGELLQLTHELGYDGGAFFSPDGSKIVWRASRPTGEAAERYRRLLAQGLVEP 257 Query: 328 ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKD 379 L+V ++GS+ +R+ Q S + P + P G+ I F G F + +++ D Sbjct: 258 TDMDLFVADADGSNPRRVIQ-LPGSQWAPYFHPDGERIIFASNHHTEGGRLFDLFLIRLD 316 Query: 380 GSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKD 411 G+ + A P +S G+ L+F+ ++ Sbjct: 317 GTGLEQITHSGTFDAFPMFSRDGKRLVFASNRN 349 >gi|294627159|ref|ZP_06705747.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598592|gb|EFF42741.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 779 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 7/143 (4%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ S SPD + + + S DR G L N + + S P WSP G Sbjct: 228 DLTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQ 287 Query: 361 IAFTKFS--GEKFAI--GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IAF++ + G + + S+E + + +++ + +WSP GR+L+F + Sbjct: 288 IAFSRQAPDGSCWVMIAAATGPAASREVVRCDGADMLSFSWSPDGRALVFGSMTGTHGAA 347 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 ++ +DL R ++ PA A D Sbjct: 348 RMRRLDLATRQWQALDYPAQAGD 370 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 13/225 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + P +S +G++ Sbjct: 229 LTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQI 288 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + + E + +S S+SPD +VF S G + Sbjct: 289 AFSRQAPDGSCWVMIAAATGPAASREVVRCDGADMLSFSWSPDGRALVFGSMTGTHGAAR 348 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + + +A FD P +SP G+ I F + + + G ERL Sbjct: 349 MRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERL 408 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++++++ +W P G LIF R+ D + ++LY +DL R+ +L Sbjct: 409 THDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL--RDHSL 449 >gi|116622819|ref|YP_824975.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] gi|116225981|gb|ABJ84690.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] Length = 1137 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 7/101 (6%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREG 324 S G RA+ + I +V LTNT ++ S ++SPD I + SD G Sbjct: 319 SPTGVRAVFEGHGE----ILTVPADKGEVRNLTNTPGVMDRSPAWSPDGKTIAYFSDESG 374 Query: 325 KEQLYVMQSNGSDQ-KRIS-QDKEASYFDPVWSPQGDLIAF 363 + L++ NG+ + K+I+ K A YFDP WSP IAF Sbjct: 375 EYALHIKAQNGAGETKKIALAGKSAFYFDPKWSPDSKAIAF 415 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 34/191 (17%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----ASYSPDSSQIVFESDREGKEQL 328 I+ K+ A++I D+ ++ TE F N++ ++ SP + VFE G ++ Sbjct: 283 IASGKEHAVNI---DIAADLTE--VRPHFQNVARELRNSAISPTGVRAVFE----GHGEI 333 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-FTKFSGEKFAIGVMKKDGSQERLLV 387 + ++ + + ++ P WSP G IA F+ SGE +A+ + ++G+ E + Sbjct: 334 LTVPADKGEVRNLTNTPGVMDRSPAWSPDGKTIAYFSDESGE-YALHIKAQNGAGETKKI 392 Query: 388 EDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-------- 435 + A P WSP +++ F+ +D L+++++ T ++T Sbjct: 393 ALAGKSAFYFDPKWSPDSKAIAFNDNQD-----NLWTVEVASGKLTKVDTNYLYDLNRGF 447 Query: 436 -YASDPQWVGF 445 ++ D +W+ F Sbjct: 448 NWSGDSKWIAF 458 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 10/116 (8%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +FS +GK + + D +D+++V + +R+T + +S D S+IVF S+R Sbjct: 69 KFSPDGKTLAFTGEYDGNVDVFTVPVAGGVPKRVTYHPDGDRVVGWSADGSRIVFRSNRL 128 Query: 324 GKE---QLYVMQSNGS--DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + QLY + + G D + +Y SP G + + G +FA G Sbjct: 129 SQSRYTQLYTVAAEGGLPDVLPLPLACMGAY-----SPDGKRMVYAPLDGGQFAPG 179 >gi|116622793|ref|YP_824949.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225955|gb|ABJ84664.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 885 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/186 (19%), Positives = 77/186 (41%), Gaps = 7/186 (3%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P + +G+R + + D+ D+ + L A L S ++SPD Q+++ +DR Sbjct: 575 PSLAPDGRRLVFTSVTDD-FDLIELPLDGTAPRTLLANSRNMYSPAWSPDGDQLLYATDR 633 Query: 323 EGKEQLYVMQSNGSDQKRISQDKE------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 G +++ S + + ++ + PV+SP G AF +++ ++ A + Sbjct: 634 SGASEIWSRNVKASIDRPMVTARDFPPGTTTALTHPVFSPDGSRFAFVRYATDQPATIWV 693 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + + + + +PTWSP G S+ +D + + N + + P Sbjct: 694 EPTVGGAPIRMASEYMVSPTWSPDGNSIAGLMHRDRPWQPAIVEVGANMSPHVIASAPTC 753 Query: 437 ASDPQW 442 +W Sbjct: 754 LMPMEW 759 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 15/201 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR--IDRAP 250 L + DG R L + + ++ P +SP+ ++ YAT D ++ + + IDR Sbjct: 595 LIELPLDGTAPRTLL-ANSRNMYSPAWSPDGDQLLYAT-DRSGASEIWSRNVKASIDRPM 652 Query: 251 KRIGNF----RSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +F + + P FS +G R A + D+ I+ A R+ + + Sbjct: 653 VTARDFPPGTTTALTHPVFSPDGSRFAFVRYATDQPATIWVEPTVGGAPIRMASEYMV-- 710 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD + I R+ Q +++ + + WSP G+ +A Sbjct: 711 SPTWSPDGNSIAGLMHRDRPWQPAIVEVGANMSPHVIASAPTCLMPMEWSPTGEWLACEA 770 Query: 366 FSGEKFAIGVMKKDGSQERLL 386 +G I + +DG++ R L Sbjct: 771 RTG----IELFSRDGARRRTL 787 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 13/164 (7%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDL--QSNATERL---TNTLFINISASYSPDSSQIVF 318 FS +GK L+ V A ++ + S A R+ TN F+ A + PDS V Sbjct: 484 HFSPDGKSILL-VASGIAPQVWVLPFPASSGAPRRVFSATNFNFVPRGA-WMPDSRHAVL 541 Query: 319 ESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 G + L+ ++++ A F P +P G + FT + + F + + Sbjct: 542 SFSTGGAQPALWFADLEREKLRKLTASTAAEEF-PSLAPDGRRLVFTSVT-DDFDLIELP 599 Query: 378 KDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 DG+ R L+ +S N+ +P WSP G L+++ + G S+++S Sbjct: 600 LDGTAPRTLLANSRNMYSPAWSPDGDQLLYATDRSG--ASEIWS 641 >gi|309791760|ref|ZP_07686249.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] gi|308226203|gb|EFO79942.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] Length = 322 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 27/235 (11%) Query: 215 FEPRFSPNQQKVAYATYDDE--DILRV--------YLMDTRIDRAPKRIGNFRSMILA-- 262 ++P +P+ +++AY D+ D+L L + P + A Sbjct: 58 WQPALAPDGRRIAYVRRDNSFSDVLLADASGAPLGQLTTNGSRQPPNSLARVYESTWAFY 117 Query: 263 PRFSSNGKRALISVQK---------DEAMDIYSVDLQSNATERLTNTLFINISAS-YSPD 312 P ++ G R +++ Q D + ++ + + L + + S Y PD Sbjct: 118 PTWAPTGDRLVVTGQAVPPSGDPPVDANLGLFELSVAGGYQPMLYAAPNVQVGRSLYLPD 177 Query: 313 SSQIVF---ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +++F + +G++QLY++ + + + SY DP SP G +AF G+ Sbjct: 178 GQRLLFVRSPNSADGQQQLYLLDLDTGAAEPFAAAPSPSY-DPAISPDGRWLAFAAQDGD 236 Query: 370 KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G L + D + +AP +SP GR + F G+ G L+ DL Sbjct: 237 GTDLFALPLAGGGTPLRLSDIGSARAPAFSPDGRQIAFLAIAPGEGGFDLWVADL 291 >gi|256821999|ref|YP_003145962.1| transcriptional regulator CadC [Kangiella koreensis DSM 16069] gi|256795538|gb|ACV26194.1| transcriptional regulator, CadC [Kangiella koreensis DSM 16069] Length = 741 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 9/128 (7%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A Y+ S +IVF S R G+ Q+++ +NG++Q+ S ++ WSP + + F Sbjct: 491 AEYANTSDRIVFVSRRTGEPQIWLKNTNGTEQQLTSFERNFDIRRIRWSPDDESLLFIH- 549 Query: 367 SGEKFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 KF + + + + ++L E +++ +W+ +GRS++FS +DGD ++Y + L Sbjct: 550 --NKF-LYQLSLNNMELKVLYEAQGGESIEGESWTVNGRSVLFSSDRDGDW--QVYKLSL 604 Query: 424 NGRNETLI 431 N+ I Sbjct: 605 QSENDKAI 612 >gi|317128020|ref|YP_004094302.1| WD40-like beta Propeller containing protein [Bacillus cellulosilyticus DSM 2522] gi|315472968|gb|ADU29571.1| WD40-like beta Propeller containing protein [Bacillus cellulosilyticus DSM 2522] Length = 666 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 60/242 (24%) Query: 263 PRFSSNGKRA---LISVQKDE---AMDIYSVDLQSNATERLTN-----TLFINISASYSP 311 P+ S N +A L V K++ +IY DL+ + ++ L ++ + +SP Sbjct: 20 PQVSPNKDKAAYVLTHVDKEKDGYYSNIYVTDLKGPGRQFTSHYAKEDKLVVDAAPKWSP 79 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG------------- 358 D S + F S+R GK Q+Y++ ++G + +++ K+ D WSP G Sbjct: 80 DGSSLAFRSNRTGKNQVYLLHTDGGEAIQLTDVKQGV-GDYDWSPDGSKLVLTIRGEFKL 138 Query: 359 -------------DLIAFTKFSGEKFAIGVMKKDGSQ-----------ERLLVEDSNLQA 394 D+ T+ + G+ D + ++ D + Sbjct: 139 STDKDEEKKEEKSDVKVITRLRYKGDGAGIYNDDRTHVYLFDVNTKEYTKVTEGDHDFGQ 198 Query: 395 PTWSPSGRSLIF--SRKKDGDTG--SKLYSIDLNGRNETL-------INTPAYASDPQWV 443 P +SP G SLI+ ++ +D + G ++ D+ + E L I P+++ D +W+ Sbjct: 199 PRFSPDGASLIYIGTKAEDKEWGYLPAIWKYDIEKKEEALFYQGNGYIYAPSFSPDGKWL 258 Query: 444 GF 445 F Sbjct: 259 AF 260 >gi|226312267|ref|YP_002772161.1| peptidase [Brevibacillus brevis NBRC 100599] gi|226095215|dbj|BAH43657.1| putative peptidase [Brevibacillus brevis NBRC 100599] Length = 671 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 +SPD S+I F S+R GK Q++++ +NG + +++++ K +P WSP G I F+ Sbjct: 72 WSPDGSKISFVSNRSGKPQIWLIDANGGEARQLTRCKNGVS-NPTWSPDGKYIVFSSILD 130 Query: 367 SGEKFA 372 GE FA Sbjct: 131 EGETFA 136 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 310 SPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SPD + + + + LY+ + + D ++ +Y P WSP G I+F Sbjct: 25 SPDGKTLAYVENQIDESHAYQNHLYLRKLDVDDPLPLTSGSRDTY--PRWSPDGSKISFV 82 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFS 407 K I ++ +G + R L N + PTWSP G+ ++FS Sbjct: 83 SNRSGKPQIWLIDANGGEARQLTRCKNGVSNPTWSPDGKYIVFS 126 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 17/197 (8%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PR+SP+ K+++ + + +++L+D A +++ ++ + P +S +GK + S Sbjct: 70 PRWSPDGSKISFVS-NRSGKPQIWLIDANGGEA-RQLTRCKNGVSNPTWSPDGKYIVFSS 127 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 DE DL++ + + + Y D ++E ++ QL ++ Sbjct: 128 ILDEGETF--ADLEAAEEKEKAKAIHVG-RMKYKSDDLGFIYEKNK----QLAIVHVETG 180 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--FAIGV----MKKDGSQERLLVEDS 390 + +S D ++ WSP G +A T E F G+ + +G + + L Sbjct: 181 EVTPLS-DGPYNHTIGSWSPDGKWLAVTANRSEDPDFQHGIDVFIIPSEGGEWKKLTNSK 239 Query: 391 NLQA-PTWSPSGRSLIF 406 + A PTWSP G+ L + Sbjct: 240 GIFAYPTWSPDGKKLAY 256 >gi|299146617|ref|ZP_07039685.1| MdsD protein [Bacteroides sp. 3_1_23] gi|298517108|gb|EFI40989.1| MdsD protein [Bacteroides sp. 3_1_23] Length = 1119 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ + SY +PVWSP G IAF Sbjct: 28 ARISPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS-------- 416 F + +M DG R L S + P+ ++P G+ + FS S Sbjct: 82 DRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + + GR E ++ TPA Sbjct: 142 TELYKVPVAGGRTEQVLGTPA 162 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 104 Y-HSASEIPSAFTPDGKYVFFS 124 >gi|160882853|ref|ZP_02063856.1| hypothetical protein BACOVA_00815 [Bacteroides ovatus ATCC 8483] gi|156111717|gb|EDO13462.1| hypothetical protein BACOVA_00815 [Bacteroides ovatus ATCC 8483] Length = 1119 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ + SY +PVWSP G IAF Sbjct: 28 ARISPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS-------- 416 F + +M DG R L S + P+ ++P G+ + FS S Sbjct: 82 DRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + + GR E ++ TPA Sbjct: 142 TELYKVPVAGGRTEQVLGTPA 162 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +SPD QI F SDR G L++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 104 Y-HSASEIPSAFTPDGKYVFFS 124 >gi|57505319|ref|ZP_00371248.1| colicin tolerance-like protein (tolB) [Campylobacter upsaliensis RM3195] gi|315639284|ref|ZP_07894446.1| colicin tolerance family protein (tolB) [Campylobacter upsaliensis JV21] gi|57016455|gb|EAL53240.1| colicin tolerance-like protein (tolB) [Campylobacter upsaliensis RM3195] gi|315480610|gb|EFU71252.1| colicin tolerance family protein (tolB) [Campylobacter upsaliensis JV21] Length = 402 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+++ +Q + Y T D D ++ D ++A K + + M++A + G + L+++ Sbjct: 178 PKWANEEQTMFYYTAYDHDKPTLFRFDLTNNKASKILSS-GGMVVASDVNKKGDKILVTM 236 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQIVFESDREGKEQLYVMQSNG 335 + D+Y DL S +LTN I+++A++ D S++VF SDR G +++ Q+ G Sbjct: 237 APQDQPDVYLYDLNSKNLSKLTNYSGIDVNANFIGEDESKVVFVSDRLGYPNIFI-QNLG 295 Query: 336 S 336 S Sbjct: 296 S 296 >gi|312198255|ref|YP_004018316.1| serine/threonine protein kinase [Frankia sp. EuI1c] gi|311229591|gb|ADP82446.1| serine/threonine protein kinase [Frankia sp. EuI1c] Length = 698 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 19/202 (9%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + + DG + R L S D P +SP+ ++AY + +YLM Sbjct: 494 VGGQIVTVRPDGTDARQLATSGDSSAEYPAWSPDGTQIAYF----RNTGGLYLMQADGTG 549 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV-DLQSNATERLTNTLFINISA 307 A +R+ + + A +S +G+ + + + I S+ D A + I + Sbjct: 550 A-RRVASVHGLETA--WSPDGREIVFRDPDSQTLKIVSMADGSVRALTGAPHDGAIPVEP 606 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD IVF SD G +Y + +G+ + Q A + P WSP G ++ S Sbjct: 607 SWSPDGKTIVFGSDDGG---IYAIAPDGTG---LHQLAAAGSWHPTWSPDGRVVFVRDTS 660 Query: 368 GEKF-----AIGVMKKDGSQER 384 F + MK DGS R Sbjct: 661 ARTFFSTTGRVESMKLDGSDVR 682 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+ ++ +G+D ++++ ++S P WSP G IA+ + +G + +M+ DG+ R + Sbjct: 497 QIVTVRPDGTDARQLATSGDSSAEYPAWSPDGTQIAYFRNTGGLY---LMQADGTGARRV 553 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP---AYASDPQW 442 L+ WSP GR ++F R D T K+ S+ +G L P A +P W Sbjct: 554 ASVHGLET-AWSPDGREIVF-RDPDSQT-LKIVSM-ADGSVRALTGAPHDGAIPVEPSW 608 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD +QI + + G LY+MQ++G+ +R++ + WSP G I F Sbjct: 523 AWSPDGTQIAYFRNTGG---LYLMQADGTGARRVAS---VHGLETAWSPDGREIVFRDPD 576 Query: 368 GEKFAIGVMKKDGSQERLL--VEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + I V DGS L D + P+WSP G++++F G +Y+I + Sbjct: 577 SQTLKI-VSMADGSVRALTGAPHDGAIPVEPSWSPDGKTIVFGSDDGG-----IYAIAPD 630 Query: 425 G 425 G Sbjct: 631 G 631 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%) Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 +Q++ T + ++SPD +IVF D + + V ++GS + + + Sbjct: 543 MQADGTGARRVASVHGLETAWSPDGREIVFR-DPDSQTLKIVSMADGSVRALTGAPHDGA 601 Query: 349 Y-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +P WSP G I F G +AI DG+ L + PTWSP GR ++F Sbjct: 602 IPVEPSWSPDGKTIVFGSDDGGIYAI---APDGTGLHQLAAAGSWH-PTWSPDGR-VVFV 656 Query: 408 RKKDG----DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 R T ++ S+ L+G + + + + QW Sbjct: 657 RDTSARTFFSTTGRVESMKLDGSDVRSVGSVTASGPVQWA 696 >gi|302141778|emb|CBI18981.3| unnamed protein product [Vitis vinifera] Length = 541 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 83/216 (38%), Gaps = 36/216 (16%) Query: 217 PRFSPNQQKVAYATYDD-----------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 P FSP ++AY + ++ T D KR G + P F Sbjct: 288 PSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDH--KRKGVVYTSA-GPTF 344 Query: 266 SSNGKRA-LISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 ++ + ++S+ D+ Y RLT + + ++SPD IVF SDRE Sbjct: 345 ATESTKVDIVSINVDDVDQPSYKKLTTGGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRE 404 Query: 324 ----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW-SPQGDLIAFTK----FSGEKFA-- 372 G +LYV+ NG+ +++ A + W SP G I FT S E + Sbjct: 405 NPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNA 464 Query: 373 --------IGVMKKDGSQERLLVEDSNLQA-PTWSP 399 I V+ DGS L +S P W+P Sbjct: 465 HHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 500 >gi|319901098|ref|YP_004160826.1| peptidase S41 [Bacteroides helcogenes P 36-108] gi|319416129|gb|ADV43240.1| peptidase S41 [Bacteroides helcogenes P 36-108] Length = 1084 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK + D IY V ++ +LT + +SPDS QI F SDR Sbjct: 29 RISPDGKEIAFCYKGD----IYKVPVKGGTAMQLTTQDSYECTPVWSPDSKQIAFASDRY 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G ++VM +NG +R++ + A ++P G I F+ Sbjct: 85 GNFDIFVMPANGGTARRLTTN-SAGELPSTFTPDGKYILFS 124 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F K +Y + G +++ +++ PVWSP IAF Sbjct: 31 SPDGKEIAFCY----KGDIYKVPVKGGTAMQLTT-QDSYECTPVWSPDSKQIAFASDRYG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRK-KDGDTG--------SKLY 419 F I VM +G R L +S + P T++P G+ ++FS +D T ++LY Sbjct: 86 NFDIFVMPANGGTARRLTTNSAGELPSTFTPDGKYILFSASIQDAATSALFPTTAMTELY 145 Query: 420 SI-DLNGRNETLINTPAYA 437 + GR E ++ TPA A Sbjct: 146 KVPSTGGRTEQVLGTPAEA 164 >gi|312886639|ref|ZP_07746246.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] gi|311300741|gb|EFQ77803.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] Length = 1078 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 19/163 (11%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 +EP FSP+ + + Y ++ DE + +D R+ R +P++++ G + I Sbjct: 397 YEPEFSPDGKSLVYVSWADEMKGSINTIDLTTHLI-MRLTTDRGYYYSPKYANRGDK--I 453 Query: 275 SVQKDE-----------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +K E A IY + + + + N I +S D S+I ++S Sbjct: 454 IYRKGEGNEVLGYFFGNAPGIYIIPVTGGKPQLVINN---GIHPQFSADDSKIYYQSSEG 510 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 K+ VM +G++QK + A+ F P SP G +AFT+ Sbjct: 511 DKKAFKVMDVSGANQKTLYTSTYATQFAP--SPDGKWMAFTEL 551 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 21/180 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + L ++ +SPD I + SD +G + +++M ++G +++ ++ Sbjct: 63 DIYAMPITGGKATLLAGGKAWDVQPRFSPDGKSISYTSDHDGGDNIWLMNADGGNKRPVT 122 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEK-FAIGVM---KKDGSQERLLVEDSNLQ---- 393 ++ + W+P G L+A F+G + G M K+G L + N Q Sbjct: 123 KENFRLLNNASWTPDGQYLVARKHFTGSRSLGAGEMWLYYKNGGDGIQLTKRKNDQQDAG 182 Query: 394 APTWSPSGRSLIFSR--------KKDGDTGSKLYSID-LN---GRNETLINTPAYASDPQ 441 P SP G+ + +S + + D + +Y+I LN G ET+ A PQ Sbjct: 183 EPVASPDGKYIYWSEDITPGPSFQYNKDPNAGIYAIKRLNRETGEIETVAGGAGGACRPQ 242 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 21/180 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRIS 342 IY+ L + +R+T + +SPD +V+ S E K + + R++ Sbjct: 376 IYTKALPNGVPQRITTGTDLEYEPEFSPDGKSLVYVSWADEMKGSINTIDLTTHLIMRLT 435 Query: 343 QDKEASYFDPVWSPQGDLIAFTK---------FSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 D+ Y+ P ++ +GD I + K F G I ++ G + +L++ +N Sbjct: 436 TDR-GYYYSPKYANRGDKIIYRKGEGNEVLGYFFGNAPGIYIIPVTGGKPQLVI--NNGI 492 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS------DPQWVGFMD 447 P +S + S I+ + +GD +D++G N+ + T YA+ D +W+ F + Sbjct: 493 HPQFS-ADDSKIYYQSSEGDK-KAFKVMDVSGANQKTLYTSTYATQFAPSPDGKWMAFTE 550 >gi|299137326|ref|ZP_07030508.1| peptidase S41 [Acidobacterium sp. MP5ACTX8] gi|298600731|gb|EFI56887.1| peptidase S41 [Acidobacterium sp. MP5ACTX8] Length = 1128 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++SV++ A RLT++ + AS SPD + F + EG +++Y + G +R + Sbjct: 54 DLWSVNVHGGAAHRLTSSPGLERMASISPDGLTVAFSAQYEGPDEVYTIPITGGMPQRKT 113 Query: 343 QDKEASYFDPV-WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 D A PV W P G L+ T G++ ER V + +S G Sbjct: 114 WDGGAV---PVGWKPDGRLVISTNRYSTLPDPGLVLVGSHGERERVPLATGSEAAYSADG 170 Query: 402 RSLIFSR 408 ++L F+R Sbjct: 171 KTLFFTR 177 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 7/172 (4%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR--ALISVQKDEAMDIYSVDLQSNATER 296 V+ + R R K G+ + RF +GK AL + + Y + + + Sbjct: 333 VFTLPVRSGRIIKVAGDSATRYRGARFLPDGKSVVALSTESGETEFWKYPANGEGKPEQW 392 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + SPD + + + EQL+V + KRI+Q + D WSP Sbjct: 393 THDAKVLRWEGVPSPDGRWL---AHHDKDEQLWVYDTKTKQSKRIAQSTTGDFSDLSWSP 449 Query: 357 QGDLIAFTKFSGEKFA-IGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +A+ + + +F+ V+ + G+ + + N P WS G+ L F Sbjct: 450 DSRWLAYVETAENQFSQTKVLNVESGAITTITSDRYNSVNPIWSSDGKWLYF 501 >gi|238495090|ref|XP_002378781.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220695431|gb|EED51774.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 422 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 54/294 (18%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R I H+ S +QS G +G ++ ++ + G K L + D DG N R L S Sbjct: 36 RDIPHSPSPSAHQS--GRRGLGKDGVMLMNR-IAPGTSK--LYISDIDGGNERPLL-SDP 89 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR------F 265 + FSP+ Q V + + + D ++ I R + + + ++ P Sbjct: 90 VFEYHASFSPDGQWVLFTSERNGD------GNSDIWRVRTKGSDLQPLVTTPAVEDSVVL 143 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIVFESDREG 324 S++G A + + +I+ +DL + LT+T I + + SPDS I F SDR Sbjct: 144 STSGTHAAYASTEGMIANIWVLDLVTGNRWNLTDTPAIAATTNKTSPDSQWIAFSSDRNT 203 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----EKFAIGVMKKDG 380 K W+ G F SG ++ +I ++ DG Sbjct: 204 K----------------------------WAGHG-WETFMGLSGWEHTQELSIFAIRPDG 234 Query: 381 SQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + R ++ E L +P+WS G+ +++ T S D+N N ++++ Sbjct: 235 TGFRKVIGKEGYALGSPSWSADGKRIVYYEMTRETTWDAHSSFDVNSANSSIVS 288 >gi|284037589|ref|YP_003387519.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] gi|283816882|gb|ADB38720.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] Length = 660 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 9/109 (8%) Query: 263 PRFSSNGKRALISVQK---DEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +G+ ++ + DE DI+ V++Q+ +LTN+ N S ++SPD + Sbjct: 37 PKISPDGQWVAYTLTRTNWDENSYDTDIWLVNIQTGNRFQLTNSKKSNNSPAWSPDGKWL 96 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFT 364 F S R+ K QLY++ +G + + IS+ + + F WSP G I FT Sbjct: 97 AFLSTRDDKPQLYLISPSGGEARAISKFETGVTAFR--WSPNGKQIVFT 143 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 48/247 (19%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ + +A+ + D D ++YL+ A + I F + + A R+S NGK+ + + Sbjct: 87 PAWSPDGKWLAFLSTRD-DKPQLYLISPSGGEA-RAISKFETGVTAFRWSPNGKQIVFTA 144 Query: 277 ---------QKDEAMDIYSV--DLQSNATERLTNTLFINISAS----------------Y 309 ++ E Y V D L ++LF AS Sbjct: 145 TVPDAKPDKERKEKYSDYEVVRDDYKMVHLYLIDSLFNEKPASAKPLTRGKDFSVGNFVV 204 Query: 310 SPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD +I +++ R LYV+ + ++I K DPVWSP G IAF Sbjct: 205 SPDGKKIAYDAARNPDLINGHTSDLYVLTLGDTISRKIVSLKGPDQ-DPVWSPDGKQIAF 263 Query: 364 TKFSGEKF------AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + +F I + G +L D N W+P G ++FS + T Sbjct: 264 VTANENEFYFYTNRLIATVPATGGTPTMLTNTFDENANLLDWTPDG--ILFSGYQ--KTS 319 Query: 416 SKLYSID 422 S L+ +D Sbjct: 320 SHLFRLD 326 >gi|188994620|ref|YP_001928872.1| prolyl oligopeptidase [Porphyromonas gingivalis ATCC 33277] gi|188594300|dbj|BAG33275.1| prolyl oligopeptidase [Porphyromonas gingivalis ATCC 33277] Length = 684 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 14/165 (8%) Query: 291 SNATERLTNTLFINIS----ASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKR 340 +N E LT LF+ +S + SPD V+ + +L+ + +GS +K+ Sbjct: 25 TNTGEHLTPELFMTLSRVSEMALSPDGKTAVYAVSFPDVKTNKATRELFTVNLDGSGRKQ 84 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSP 399 I+ D E++ + P W G IAF G + VM DG++ R L + + +SP Sbjct: 85 IT-DTESNEYAPAWMADGKRIAFMSNEGGSMQLWVMNADGTERRQLSNIEGGITGFLFSP 143 Query: 400 SGRSLIFSRK-KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + ++F++ K G +Y DL+ +I Y +WV Sbjct: 144 DEKQVLFTKDIKFGKRTKDIYP-DLDKATGRIITDLMYKHWDEWV 187 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 265 FSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S +GK A+ +V ++++V+L + +++T+T + ++ D +I F Sbjct: 47 LSPDGKTAVYAVSFPDVKTNKATRELFTVNLDGSGRKQITDTESNEYAPAWMADGKRIAF 106 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S+ G QL+VM ++G++++++S + E ++SP + FTK Sbjct: 107 MSNEGGSMQLWVMNADGTERRQLS-NIEGGITGFLFSPDEKQVLFTK 152 >gi|298241759|ref|ZP_06965566.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297554813|gb|EFH88677.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 808 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/264 (21%), Positives = 114/264 (43%), Gaps = 52/264 (19%) Query: 212 QILFEPRFSPNQQKVAYA-----TYDDEDILRVYLMDTRIDR--APKRIGNFRSMILAPR 264 +++ EP+ SP+ +++A++ T + ++++++R + +P ++ + APR Sbjct: 171 RVVGEPQISPDGKRIAFSVLQCDTETNSTSSAIWIVESRGGKTQSPWQVSSGTQHDYAPR 230 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFES--- 320 +S +G+ ++ IY + L+ +L+N L + +S S+ PD + ++ S Sbjct: 231 WSPDGRYLSFLSDREGTPQIYLLPLRGGEARQLSN-LPLGVSEYSWRPDGAILLAHSAWK 289 Query: 321 --DREG---------------------------KEQLYVMQSNGSDQKRISQDKEASYFD 351 D +G EQL+++ +G+ + S+ + + Sbjct: 290 AADEQGSGQGEETSYVVMRLASHWDGAGYKHGRHEQLWLLGLDGTTTRLTSEPVDLTQV- 348 Query: 352 PVWSPQGDLIAFTKFS------GEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSL 404 WSP G I F+ A+ V+ G RL E+ Q P+WSP GRS+ Sbjct: 349 -CWSPDGSEIVFSANRRADPDLSVSAALWVLTLATGQLRRLTPEEELAQMPSWSPDGRSI 407 Query: 405 IFSRKKDGDTGSKL--YSIDLNGR 426 + R D S + + + NG+ Sbjct: 408 AYLRSPDQTEASNISPWIVAANGQ 431 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 33/186 (17%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R +S+ A + E + + +D T RLT+ +SPD S+IVF ++R Sbjct: 308 RLASHWDGAGYKHGRHEQLWLLGLD---GTTTRLTSEPVDLTQVCWSPDGSEIVFSANRR 364 Query: 324 G------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV-- 375 L+V+ +R++ ++E + P WSP G IA+ + + A + Sbjct: 365 ADPDLSVSAALWVLTLATGQLRRLTPEEELAQM-PSWSPDGRSIAYLRSPDQTEASNISP 423 Query: 376 --MKKDGSQ----ERLLVEDSNLQ-------------APTWSPSGRSLIFSRKKDGDTGS 416 + +G + ED N Q AP WSP G++L+ + G Sbjct: 424 WIVAANGQETPRPAATGAEDINSQMWIIDELRTDYLVAPQWSPDGQALLVPGQTHGQI-- 481 Query: 417 KLYSID 422 LY I+ Sbjct: 482 HLYRIN 487 >gi|315128152|ref|YP_004070155.1| protease [Pseudoalteromonas sp. SM9913] gi|315016665|gb|ADT70003.1| protease [Pseudoalteromonas sp. SM9913] Length = 1073 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 52/216 (24%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT-LFINISASYSPDS 313 N I + S +GKRA+ + + + ++SV ++ T L+ T I AS+SP+ Sbjct: 313 NVSDFIDSMSLSHDGKRAVFTARGE----LFSVPIKQGPTRNLSYTEKSREIDASWSPNG 368 Query: 314 SQIVFESDREGKEQLYVM-QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------- 364 I + SD G+ ++Y+ +S + K+++ + F P+WSP + F+ Sbjct: 369 RYITYMSDESGEYEIYLKDRSKNNAIKQLTSNGTIWRFTPIWSPDSSKLLFSDKNNTLWW 428 Query: 365 --KFSGEKFAI--GVMKKDG---------SQE-------------------------RLL 386 SG++ I G+ +DG SQ+ RL Sbjct: 429 LDAKSGKQHKIDTGIYDEDGITQYTWSPNSQDIVFVKNNENRYASLWHYNLKKKKVTRLT 488 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 E SN Q PT+SP G+ L FS ++D + Y D Sbjct: 489 DEMSNEQNPTFSPDGQYLYFSSERDFNLAFSSYEFD 524 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 22/184 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + Q+ ++RLT+ + +SPD +I F ++ G Q+YV+ S+GS+ K+++ Sbjct: 47 DIYIANTQTGESKRLTDHIGFETFPKFSPDGKRIAFSAEYNGSRQIYVINSDGSNLKQLT 106 Query: 343 QDKEASYFDPV---------WSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLV-- 387 + P W+ G + F T + ++ DG E+ L Sbjct: 107 YYNDVGPMPPRGGFDYRVLDWTADGKNVVFRANRTPWGKRMGRPYMVPADGGLEQPLAIP 166 Query: 388 -EDSNLQAP-----TWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDP 440 + +P ++P R ++ G ++ DL +E L A P Sbjct: 167 ETGGGMLSPDGSKYVYTPIDREFRTWKRTRGGRAQDVWIYDLEKNTSEQLTTNRATDQQP 226 Query: 441 QWVG 444 WVG Sbjct: 227 TWVG 230 >gi|312889308|ref|ZP_07748862.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] gi|311298185|gb|EFQ75300.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] Length = 1075 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 19/180 (10%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S NGK L ++ D IY + + + ++T + +N S +SPD +I + SD G Sbjct: 66 ISPNGKLILFTLLGD----IYKLPITGGSATQITRGMAMNCSPVWSPDGKKIAYISDESG 121 Query: 325 KEQLYVMQSNGSDQKRISQDK---EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 L++M + G ++ +++ K A + P W+P G ++ + V G Sbjct: 122 GYGLHIMDTTGKSKRLLTKAKLPLYARFNAPKWTPDGLAVSVDQM--------VYPLIGG 173 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN--ETLINTPAYASD 439 +ERL DSN+ ++ +F D D I N N +T+I T + D Sbjct: 174 EERL--PDSNMPVDSFIGFSSDGLFMYYSDFDLNGNTIIIKYNRINSAKTIIYTARHKQD 231 >gi|325103152|ref|YP_004272806.1| amidohydrolase [Pedobacter saltans DSM 12145] gi|324972000|gb|ADY50984.1| amidohydrolase [Pedobacter saltans DSM 12145] Length = 1075 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + E L L + +SPD I + SD++G + +++M ++GS ++ I+ Sbjct: 63 DIYKMPVTGGDAELLAGGLAWEVQPRFSPDGKLISYTSDKDGADNIWIMNADGSGKRAIT 122 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFSGEKF-AIGVM----KKDGSQERLLVE----DSNL 392 ++ + VW+P G L+A F G + A G + G + L + NL Sbjct: 123 KENINLLNNAVWTPDGQYLVARKNFLGRRTNAAGELWMYHVSGGFEGTQLTQRKRGQRNL 182 Query: 393 QAPTWSPSGRSLIFSR 408 P S SG+ L +S Sbjct: 183 GEPFVSKSGKELYYSE 198 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 15/154 (9%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRIS 342 IY +L ERLT +SPD + I++ S + E K + + + +++ Sbjct: 376 IYVKNLPDGKPERLTTETDWEFDPCFSPDGNFIIYTSWNDELKGSIMKIDLSSKKIDKLT 435 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKF---------AIGVMKKDGSQERLLVEDSNLQ 393 + Y+ P +S +GDLI + K G I + +G + +L++++ Sbjct: 436 P-RGGFYYTPKFSNKGDLIVYRKGVGNDLLGFTFSKNPGIYTISANGGEPKLILKEG--L 492 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 P ++ S + ++ K+DG + L S DL+G N Sbjct: 493 KPQFNKSDNRIFYTAKEDGK--NALKSCDLSGNN 524 >gi|206889249|ref|YP_002248789.1| protein TolB, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741187|gb|ACI20244.1| protein TolB, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 395 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 86/420 (20%), Positives = 174/420 (41%), Gaps = 48/420 (11%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + +V IG F I+ + + +++A F + L V E +L+ + Sbjct: 11 LIISIVFIGPVFAEKIY----LDITQPSIKKLTLAMEGFEKVPVLFNTVKE----NLEFT 62 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 + F + +K + +P W S +++V + ++ +++ V Sbjct: 63 EYFRIYGPFPYKGEGFDPSL------WKSSDVEIVVRAETLN------KISIQVFTVTAS 110 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 I K++ + + + IS DIY+ +TG+K F +R +F+ + S + + Sbjct: 111 SPIFAKEYPLNDNEYT--GNLISSDIYKLLTGKKAPFFNRFIFIKKFSKS----MGIFIS 164 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLMDTRIDRAPKRIGN 255 + +G I RD I R K+ Y++ + + + +Y + TR+++ Sbjct: 165 NWNGKTIHDTGIRRDII---SRVVLRGNKIFYSSLEGKFWHIEIYDLSTRLNKEI----- 216 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 +S L G I ++ D + + S + + ++ +I S + +SQ Sbjct: 217 IKSKALLQLGDVIGDSQFIYLENDGEISQIKITDLSGKSRTVASSRWIESSPRW--HASQ 274 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 I F S+R G Q+Y G+ +RI+ Q + + +P SP G +AF+ G F I Sbjct: 275 IFFVSNRAGSPQIY-QAVEGAGARRITFQGRYNT--EPSISPDGSKLAFSSLVG-GFQIY 330 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 ++ + + ++ N + P++ P G L + G ++Y I +G LI P Sbjct: 331 ILDLLSGTQNQITKEGNNEQPSFCPDGNFLTIMSDRRGK--KEIYLISQDG----LIQKP 384 >gi|257459074|ref|ZP_05624193.1| protein TolB [Campylobacter gracilis RM3268] gi|257443459|gb|EEV18583.1| protein TolB [Campylobacter gracilis RM3268] Length = 415 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 9/213 (4%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 +F S Q + Y Y +++ +Y + + + +I M +A S++G++ L Sbjct: 191 IFPKWASAAQNEFYYTYYVNKNTPAIYKFNLS-NGSKSKIFTGHGMTIASDVSADGRKLL 249 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 I+ + DIY D+ S + +++T+ I+++ ++ S++ F SDR G ++ Sbjct: 250 ITNAPKDQPDIYLYDIASGSAKQITDYAGIDVNGNFIDGDSRVAFVSDRLGYPNVFATSI 309 Query: 334 NGSD-QKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSN 391 NG + Q+ + K + S G+ + + ++ G F I ++ R L Sbjct: 310 NGGNVQQLVYHGKN----NNSISTNGNYVTYSSRDGGGGFNIYLISTQTDMIRQLTASGK 365 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P +S G S++F K+DG +GS + I +N Sbjct: 366 NMFPRFSSDGGSIMF-IKQDG-SGSSVGIIRVN 396 >gi|212692527|ref|ZP_03300655.1| hypothetical protein BACDOR_02023 [Bacteroides dorei DSM 17855] gi|212664938|gb|EEB25510.1| hypothetical protein BACDOR_02023 [Bacteroides dorei DSM 17855] Length = 1084 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + SNG +++ +ASY +P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPSNGGTATQLTT--QASYECNPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID----- 422 F + VM DG R L S + P T++ G ++FS S L+ Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 423 -----LNGRNETLINTPA 435 GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|189468186|ref|ZP_03016971.1| hypothetical protein BACINT_04582 [Bacteroides intestinalis DSM 17393] gi|189436450|gb|EDV05435.1| hypothetical protein BACINT_04582 [Bacteroides intestinalis DSM 17393] Length = 1066 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++IVF K LY + + G +++ +++ P+WSP G IAF Sbjct: 31 SPDGTEIVFCY----KGDLYKVPAKGGTATQLTT-QDSYECTPIWSPDGKQIAFASDRNG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KLY 419 F I +M +G + L S + P+ ++P G+ ++FS S +LY Sbjct: 86 NFDIFIMSANGGTAQRLTTHSATELPSAFTPDGKYILFSASIQDPASSALFPSAAMTELY 145 Query: 420 SI-DLNGRNETLINTPAYA 437 + + GR E ++ TPA A Sbjct: 146 KVPSVGGRTEQVLATPAEA 164 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V + +LT + +SPD QI F SDR G +++M +NG +R++ Sbjct: 44 DLYKVPAKGGTATQLTTQDSYECTPIWSPDGKQIAFASDRNGNFDIFIMSANGGTAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 A+ ++P G I F+ Sbjct: 104 T-HSATELPSAFTPDGKYILFS 124 >gi|237709151|ref|ZP_04539632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456847|gb|EEO62568.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1084 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + SNG +++ +ASY +P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPSNGGTATQLTT--QASYECNPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID----- 422 F + VM DG R L S + P T++ G ++FS S L+ Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 423 -----LNGRNETLINTPA 435 GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|308048966|ref|YP_003912532.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307631156|gb|ADN75458.1| putative two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 696 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 11/158 (6%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS---PDSSQIVFESDREGKE 326 +RAL + Q+ Y +D+ S + L SY P Q+VF S + Sbjct: 366 RRALFASQRSRIRSGYLLDVDSGERQSLPIA-----GLSYPRKVPGQPQVVFHS-WDHAN 419 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + V+ + EAS+ DP P +A+ + I + DG + +L Sbjct: 420 YISVLARGDLNHNEPYLRSEASHQDPALEPGSGRLAYVSNESGYYEIWLQDADGERRQLT 479 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +S L+ P WS G SL F G+ G++LY +DL Sbjct: 480 RMESQLRHPAWSHDGHSLAF--LGPGEQGNQLYVMDLE 515 >gi|297183048|gb|ADI19193.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0130_20J24] Length = 441 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 23/227 (10%) Query: 216 EPRFSPN--QQKVAYATYDDEDILRVYLMDTRID-------RAPKRIGNFRSMI--LAPR 264 + RFS N +A ++D+++IL + + R +I +F S L Sbjct: 199 QKRFSYNLGSNNLASWSFDNKNILYTTFTRSSVQLTIQPSIRLRAKILSFPSAFQPLGAS 258 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE- 323 + +G+ L+++ K DIYS +L++ E++ + S S D +I F SD Sbjct: 259 WRIDGESILLTLMKKGNSDIYSYNLKNAKLEKIFAWKSLETSPQMSQDGQKIAFVSDSAS 318 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQG-DLIAFTKFSG--EKFAIGVMKK 378 + Q+YV +R++ SY P WSP LI + G + F + + Sbjct: 319 PNRPQIYVYNLLNRKTERVTF--RGSYNSSPKWSPDATQLIYERQVKGVFQLFKYTLHNR 376 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +Q DS + P WSP+G+ ++FS KK G+ SKLY I G Sbjct: 377 RHTQLTFGRYDS--EKPDWSPNGKQIVFSAKK-GNV-SKLYYISAFG 419 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 14/173 (8%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM----DIYSVD 288 + DI L + ++++ I ++S+ +P+ S +G++ I+ D A IY + Sbjct: 275 NSDIYSYNLKNAKLEK----IFAWKSLETSPQMSQDGQK--IAFVSDSASPNRPQIYVYN 328 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 L + TER+T N S +SPD++Q+++E +G QL+ + +++ + S Sbjct: 329 LLNRKTERVTFRGSYNSSPKWSPDATQLIYERQVKGVFQLFKYTLHNRRHTQLTFGRYDS 388 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQA--PTWS 398 P WSP G I F+ G + + G + R+ D+N++ P WS Sbjct: 389 E-KPDWSPNGKQIVFSAKKGNVSKLYYISAFGGRTIRVTTNDNNIEETNPVWS 440 >gi|265752680|ref|ZP_06088249.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235866|gb|EEZ21361.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1084 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + SNG +++ +ASY +P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPSNGGTATQLTT--QASYECNPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID----- 422 F + VM DG R L S + P T++ G ++FS S L+ Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 423 -----LNGRNETLINTPA 435 GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|237724368|ref|ZP_04554849.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437237|gb|EEO47314.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 1084 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + SNG +++ +ASY +P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPSNGGTATQLTT--QASYECNPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM DG R L S + P T++ G ++FS S +L Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|115456491|ref|NP_001051846.1| Os03g0840200 [Oryza sativa Japonica Group] gi|50428662|gb|AAT77013.1| putative F8K7.10 protein [Oryza sativa Japonica Group] gi|108712007|gb|ABF99802.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza sativa Japonica Group] gi|113550317|dbj|BAF13760.1| Os03g0840200 [Oryza sativa Japonica Group] gi|215695413|dbj|BAG90604.1| unnamed protein product [Oryza sativa Japonica Group] gi|215713452|dbj|BAG94589.1| unnamed protein product [Oryza sativa Japonica Group] Length = 688 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLI 361 N S SPD +VF S R G + LY++ + + I + E + D + WSP G+ I Sbjct: 483 NAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWI 542 Query: 362 AFTK----FSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 AF FAI ++ +G+ R +V P +SP +SL+F+ Sbjct: 543 AFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFT 595 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 29/163 (17%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK + + ++Y +D + + RLT + + ++SPD I F Sbjct: 486 PSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWIAFA 545 Query: 320 SDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW-SPQGDLIAFT---------- 364 SDR G +Y++ NG+ +R+ + + W SP + FT Sbjct: 546 SDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFTSDYAAVSAEP 605 Query: 365 -------KFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSP 399 + GE F + + DGS R L +S P+W+P Sbjct: 606 VSNPHHYQPYGEIFTVDI---DGSNIRRLTHNSFEDGTPSWTP 645 >gi|322437622|ref|YP_004219712.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] gi|321165515|gb|ADW71218.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] Length = 621 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 22/207 (10%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ILF ES G+ NS+ V+ DGA +LTP R + +FSP ++ Y T D Sbjct: 141 ILF--ESGRRGV--NSIMVVSPDGAVTSFLTPPRLEAT-SAKFSPKGDQIVYTT-RARDY 194 Query: 237 LRVYLMDTRID-RAPKRIGNFRSMILAP------------RFSSNGKRALISVQKDEAMD 283 L R D ++ + G + AP +S +GK + +Q Sbjct: 195 FSGRLETLRFDTQSGQPAGKPTILYTAPVDRGGGWSIRGADWSPDGKTLVTVLQNSGWEH 254 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRI 341 IY++ A ++T+ F + YSPD I F S R E +++M + G + ++ Sbjct: 255 IYTLPASGGAPRQITDGQFEDTDPIYSPDGKHIAFISSRGLLEARNVFIMLATGGEPTQL 314 Query: 342 SQDKEASYFDPV-WSPQGDLIAFTKFS 367 ++ + V WSP + F S Sbjct: 315 AKFEVPGMVSQVQWSPDSRKLYFNHLS 341 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 35/195 (17%) Query: 283 DIYSVDLQSNATERLTNTLF--------INISASYSPDSSQIVFESDREGKEQLYVMQSN 334 +I+ V + A +RLTN + + S+SPD I+FES R G + V+ + Sbjct: 100 NIWLVSVSGGAPKRLTNAPAGGGDPRQSADRAPSWSPDGRWILFESGRRGVNSIMVVSPD 159 Query: 335 GSDQKRISQDK-EASYFDPVWSPQGDLIAFTK-----FSGE----KFAIGVMKKDGSQER 384 G+ ++ + EA+ +SP+GD I +T FSG +F + G Sbjct: 160 GAVTSFLTPPRLEATSAK--FSPKGDQIVYTTRARDYFSGRLETLRFDTQSGQPAGKPTI 217 Query: 385 LLVEDSN------LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI------- 431 L + ++ WSP G++L+ + G +Y++ +G I Sbjct: 218 LYTAPVDRGGGWSIRGADWSPDGKTLVTVLQNSG--WEHIYTLPASGGAPRQITDGQFED 275 Query: 432 NTPAYASDPQWVGFM 446 P Y+ D + + F+ Sbjct: 276 TDPIYSPDGKHIAFI 290 >gi|125588578|gb|EAZ29242.1| hypothetical protein OsJ_13305 [Oryza sativa Japonica Group] Length = 688 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLI 361 N S SPD +VF S R G + LY++ + + I + E + D + WSP G+ I Sbjct: 483 NAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWI 542 Query: 362 AFTK----FSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFS 407 AF FAI ++ +G+ R +V P +SP +SL+F+ Sbjct: 543 AFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFT 595 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 29/163 (17%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK + + ++Y +D + + RLT + + ++SPD I F Sbjct: 486 PSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWIAFA 545 Query: 320 SDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW-SPQGDLIAFT---------- 364 SDR G +Y++ NG+ +R+ + + W SP + FT Sbjct: 546 SDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFTSDYAAVSAEP 605 Query: 365 -------KFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSP 399 + GE F + + DGS R L +S P+W+P Sbjct: 606 VSNPHHYQPYGEIFTVDI---DGSNIRRLTHNSFEDGTPSWTP 645 >gi|320101738|ref|YP_004177329.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] gi|319749020|gb|ADV60780.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] Length = 729 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 263 PRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S G R + +V+ D++ VD Q +LT+ + +SPD + Sbjct: 79 PQVSPQGDRIVYTVKVIDRETGRSNTDLWLVDRQGKTPRQLTSHPGSDRHPRWSPDGRSV 138 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 F SDR G Q++++ + S + R P+WSPQGD +A Sbjct: 139 AFLSDRSGSTQVWLLPMDQSGEARQLTRLPLDVEGPIWSPQGDRLA 184 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Query: 351 DPVWSPQGDLIAFT-----KFSGEKFA-IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRS 403 DP SPQGD I +T + +G + ++ + G R L + P WSP GRS Sbjct: 78 DPQVSPQGDRIVYTVKVIDRETGRSNTDLWLVDRQGKTPRQLTSHPGSDRHPRWSPDGRS 137 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + F + G T L +D +G L P P W Sbjct: 138 VAFLSDRSGSTQVWLLPMDQSGEARQLTRLPLDVEGPIW 176 >gi|242279944|ref|YP_002992073.1| hypothetical protein Desal_2478 [Desulfovibrio salexigens DSM 2638] gi|242122838|gb|ACS80534.1| WD40 domain protein beta Propeller [Desulfovibrio salexigens DSM 2638] Length = 457 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 6/212 (2%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 LCV DR I + + ++ P F P+ A T + ++L++ + K Sbjct: 251 LCVWDRATGKIDQKSFPGNTVI-GPEFLPDGNMAATLTMNGNS--DIFLINGNY-KPKKA 306 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + ++ ++P F G++ + + + I+ +D++S R+T N + + SPD Sbjct: 307 LAKSWAIEVSPDFDRTGEKMVFTSARFGNPHIFLLDMKSGVVTRITTEGKYNTNPTISPD 366 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F +++V + Q+R + DP + P G IAF+ K+ Sbjct: 367 GRYVAFSRQTPLGHRIFVHDLK-TGQERQLTFGPGNDEDPAFGPDGYFIAFSSSRNGKYK 425 Query: 373 IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRS 403 I + + G L+ + + +AP W + +S Sbjct: 426 IYLTTRHGDPAMLVPTGNGVAKAPAWGKAHKS 457 >gi|193216325|ref|YP_001997524.1| WD40 domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089802|gb|ACF15077.1| WD40 domain protein beta Propeller [Chloroherpeton thalassium ATCC 35110] Length = 1114 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 42/276 (15%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 DIY T +K +F E +VSG +++L D ++ LTP+ +S Sbjct: 329 DIYIGSTIKKDEF--------EKIVSG--QDAL-----DFEELKILTPA-------ITWS 366 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ +K+A AT + L+D K N I + +S +GK K Sbjct: 367 PDGKKIAIATKAGSSD-AIMLIDVESHDTKKITFNLDG-IFSVDWSPDGKMLCFIGNKTY 424 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D+Y DL+S + LTN +F + S+SPD +I F SDR + + + Sbjct: 425 KSDVYIYDLESKTLQNLTNDVFSDSDPSWSPDGQKIFFVSDRTNHLNVKPIAVETDTSRA 484 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWS 398 + +E ++ D+ + F + + + + K S R L S + +P S Sbjct: 485 VRFTREETF---------DMTNYDYFQKDVYELSLGK---SSLRRLTATSAIDESSPIVS 532 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 P G++L+F +G +Y +DL + L NTP Sbjct: 533 PDGKTLLFVSDLNGIY--NVYKLDLT--DPGLKNTP 564 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 13/150 (8%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPV--------W 354 N S S SP + F +DR G +Y+ + D+ ++I ++A F+ + W Sbjct: 306 NTSPSISPQGDKFAFITDRNGYFDIYIGSTIKKDEFEKIVSGQDALDFEELKILTPAITW 365 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G IA +G AI ++ + +++ + + WSP G+ L F K Sbjct: 366 SPDGKKIAIATKAGSSDAIMLIDVESHDTKKITFNLDGIFSVDWSPDGKMLCFIGNK--T 423 Query: 414 TGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 S +Y DL + + L N SDP W Sbjct: 424 YKSDVYIYDLESKTLQNLTNDVFSDSDPSW 453 >gi|255558602|ref|XP_002520326.1| conserved hypothetical protein [Ricinus communis] gi|223540545|gb|EEF42112.1| conserved hypothetical protein [Ricinus communis] Length = 708 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 108/263 (41%), Gaps = 34/263 (12%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y G D S F+ E++ S + + SL +D + +P D+I F Sbjct: 375 YHRCRGASNDKKSSTQFMLENIKSPVAEISLFRID---GSFPSWSPGGDRIAFV-----E 426 Query: 223 QQKVAYATYDDEDILRVY---LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 V D D +VY T D P R G S P F+S + Sbjct: 427 FPGVYVVNRDGTDRRQVYPGNAFGTTWD--PVRPGVVYSSA-GPEFAS----------ES 473 Query: 280 EAMDIYSVDL-QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 +DI S+++ Q + ++LT N + SPD IVF S R G + LY+M + ++ Sbjct: 474 TEVDIISINVDQVGSFKKLTTNGKNNAFPAVSPDGKWIVFRSGRSGYKNLYIMDAVEGEK 533 Query: 339 KRISQDKEASYFDPV--WSPQGDLIAFT----KFSGEKFAIGVMKKDGSQERLLVED--- 389 + + E + D + WS G+ IAF F + ++ +G+ + LV+ Sbjct: 534 GGLYRLTEGPWGDTMCSWSIDGEWIAFASDRENPGSASFELFLIHPNGTGLKRLVKSGLG 593 Query: 390 SNLQAPTWSPSGRSLIFSRKKDG 412 P +SP G+S++F+ G Sbjct: 594 GRTNHPYFSPDGKSIVFTTDYGG 616 >gi|298481788|ref|ZP_06999978.1| MdsD protein [Bacteroides sp. D22] gi|298272010|gb|EFI13581.1| MdsD protein [Bacteroides sp. D22] Length = 1096 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 A SPD S+IVF K +Y + + G +++ + SY +PVWS G IAF Sbjct: 28 ARISPDGSEIVFCY----KGDIYKVPAQGGTAVQLTT--QTSYEANPVWSSDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS-------- 416 F I +M DG R L S + P T++P G+ + FS S Sbjct: 82 DRNGNFDIFIMPADGGAARRLTYHSASEIPSTFTPDGKYVFFSASIQDPASSALFPTGAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + + GR E ++ TPA Sbjct: 142 TELYKVPVAGGRTEQVLGTPA 162 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V Q +LT + +S D QI F SDR G +++M ++G +R++ Sbjct: 44 DIYKVPAQGGTAVQLTTQTSYEANPVWSSDGKQIAFASDRNGNFDIFIMPADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 104 Y-HSASEIPSTFTPDGKYVFFS 124 >gi|226227618|ref|YP_002761724.1| hypothetical protein GAU_2212 [Gemmatimonas aurantiaca T-27] gi|226090809|dbj|BAH39254.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 1121 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 284 IYSVDLQSNATERLTNT--LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 +Y + E LT + +N SPD + F +DR G + L+VM ++GS+ + + Sbjct: 88 VYRMRATGGDAEVLTQNSGVALNYQPRVSPDGKLVAFITDRRGMQNLWVMNADGSNPRAV 147 Query: 342 SQDKEASYFDPVWSPQGDLI 361 + D ++ +P W+P G I Sbjct: 148 ATDNASNMAEPAWTPDGRFI 167 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 327 QLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 +Y M++ G D + ++Q+ + + P SP G L+AF + VM DGS R Sbjct: 87 HVYRMRATGGDAEVLTQNSGVALNYQPRVSPDGKLVAFITDRRGMQNLWVMNADGSNPRA 146 Query: 386 LVED--SNLQAPTWSPSGRSLIFSR 408 + D SN+ P W+P GR +I R Sbjct: 147 VATDNASNMAEPAWTPDGRFIIVRR 171 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 48/225 (21%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--INISASYSPDSSQIVFES 320 P +++GK+ + IY+ D + +RLT F + + + SPD + F + Sbjct: 400 PASTTDGKKIVFQALGH----IYAQDGATGTPKRLTPDTFKPLEYAPAISPDGKWVAFVT 455 Query: 321 -DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG--------------------- 358 D + +Y + G ++++D Y DPVW+P G Sbjct: 456 FDDAARGNMYKVAITGGAPVKLTRDP-GDYVDPVWTPDGAQVVVGLGEGATARGRTITHN 514 Query: 359 ---DLIAFTKFSGEKFAIGV---MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 DL+ F+ +G I V +K G+ + L+ P++ P GR L + ++ Sbjct: 515 AWYDLVRFSA-AGNDTGITVASAIKPTGAAQGNEARRQLLR-PSFGPEGR-LFYPEQRAN 571 Query: 413 DTGS----KLYSIDLNGRNE-TLINTPAY-----ASDPQWVGFMD 447 G+ L S+ L+G ++ T + PA + D QWV F + Sbjct: 572 RPGAPGGVALMSVKLDGSDKRTHLTFPAADEIVPSPDGQWVAFQE 616 >gi|116619705|ref|YP_821861.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] gi|116222867|gb|ABJ81576.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] Length = 1059 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 97/250 (38%), Gaps = 43/250 (17%) Query: 191 NSLCVMDRDGANIRYLTPSRDQ----ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 N LC + A++ +L P+ Q EP SPN+ +VA+ + D I Sbjct: 2 NKLCPI---AASVLFLFPALAQKSVPYFTEPSVSPNRAEVAFVSGGD------------I 46 Query: 247 DRAPKRIGNFRSMI------LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 +P G R ++ P +S +G R + DIY ++L S A +R+T Sbjct: 47 WTSPLSGGEARLLVSHPANETRPMYSPDGTRLAFVSNRTGNGDIYVLELGSGALKRITFD 106 Query: 301 LFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 ++S D + F S D G +Y + + G +S D+ + F SP Sbjct: 107 DSAEQLDAWSRDGKYLYFSSTAQDVAGMNDIYRVSAEGGTPVAVSADRYVNEFFSAPSPD 166 Query: 358 GDLIAFT---KFSGEKFAIGVMKKDGSQ------------ERLLVEDSNLQAPTWSPSGR 402 G +AFT SG+ + G D S+ E+L D P WS G Sbjct: 167 GKSLAFTARGNTSGQWWRHGHSHLDESEIWLAAWAGGAKYEKLAAGDFKCLWPMWSADGA 226 Query: 403 SLIFSRKKDG 412 + + + G Sbjct: 227 RVYYMSDQGG 236 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 18/158 (11%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR ++LAP +G++ +V + + R+T+T ++SPDS + Sbjct: 316 FRDLVLAP----DGRKLAFTVHGEV---FAGGAREGGGALRMTHTAANETQIAWSPDSRR 368 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 V+ SDR+G +LY + S + R++ + PVWS G L+AF + + + + V Sbjct: 369 AVYVSDRDGGYRLYAYDFSTSAETRLTSEA-GDETAPVWSGDGKLLAFVRDAKQ---LCV 424 Query: 376 MKKDGSQERLLVEDSNLQAP-------TWSPSGRSLIF 406 Q R+L + P WSP + + + Sbjct: 425 YDTAAKQVRVLTSGRFPRPPFGSNRFYAWSPDSKWIAY 462 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 12/167 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++ L L + YSPD +++ F S+R G +YV++ KRI+ Sbjct: 45 DIWTSPLSGGEARLLVSHPANETRPMYSPDGTRLAFVSNRTGNGDIYVLELGSGALKRIT 104 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-------LQAP 395 D A D WS G + F+ + + + + + ++ V S AP Sbjct: 105 FDDSAEQLD-AWSRDGKYLYFSSTAQDVAGMNDIYRVSAEGGTPVAVSADRYVNEFFSAP 163 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 SP G+SL F+ + G+T + + + +E+ I A+A ++ Sbjct: 164 --SPDGKSLAFTAR--GNTSGQWWRHGHSHLDESEIWLAAWAGGAKY 206 >gi|73670480|ref|YP_306495.1| hypothetical protein Mbar_A3021 [Methanosarcina barkeri str. Fusaro] gi|72397642|gb|AAZ71915.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 499 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISASY 309 KR+G ++ + + G + + S E D+++++ +LT+T + SY Sbjct: 218 KRLGTSENVGMGKDWCPLGLKIIYSANDSKEKPDLWTIEWYGTNQTQLTDTPYGEWDPSY 277 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SPD +IV+ SD GK ++++ GS + ++ + P WSP G I FT Sbjct: 278 SPDGKRIVYVSDEGGKPEIWLRNIKGSYKVMLTNNIGVIDSTPRWSPDGSKIVFT 332 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%) Query: 271 RALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQ 327 + ++ QK D ++ V+ + +RL + + + + P +I++ + D + K Sbjct: 192 KKIVYTQKSGDAPSQLWIVNWDGSNKKRLGTSENVGMGKDWCPLGLKIIYSANDSKEKPD 251 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 L+ ++ G++Q +++ D +DP +SP G I + G K I + GS + +L Sbjct: 252 LWTIEWYGTNQTQLT-DTPYGEWDPSYSPDGKRIVYVSDEGGKPEIWLRNIKGSYKVMLT 310 Query: 388 EDSNL--QAPTWSPSGRSLIFSRKK 410 + + P WSP G ++F+ K Sbjct: 311 NNIGVIDSTPRWSPDGSKIVFTVHK 335 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTNTLFINISA--SYSPDSSQIV 317 L P ++++G L +V+++ + ++ S +++N +E T N+S+ +P+ ++++ Sbjct: 91 LFPVWTADGNHILYTVKRNGSDNLESYKMKANGSEIERTGIGEGNLSSFSDVNPNGTELL 150 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVM 376 + LY++ ++ D + S W G I +T+ SG+ + + ++ Sbjct: 151 STKSNGSQTGLYLVNLENGTVTPVADDLDKSESWGSWCRLGKKIVYTQKSGDAPSQLWIV 210 Query: 377 KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTP 434 DGS ++ L N+ W P G +I+S D L++I+ G N+T L +TP Sbjct: 211 NWDGSNKKRLGTSENVGMGKDWCPLGLKIIYS-ANDSKEKPDLWTIEWYGTNQTQLTDTP 269 Query: 435 AYASDPQW 442 DP + Sbjct: 270 YGEWDPSY 277 >gi|163757603|ref|ZP_02164692.1| putative TolB-like protein [Hoeflea phototrophica DFL-43] gi|162285105|gb|EDQ35387.1| putative TolB-like protein [Hoeflea phototrophica DFL-43] Length = 278 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 19/161 (11%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G ++D+ IY++ L E L + YSPD + I F SDR G Sbjct: 117 WSPDGSTLAYVGRRDDGFGIYTISLAGGDEEHLISGGGHYDGPDYSPDGAFIWFNSDRTG 176 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 L+ + + G + +++++D A++F P +P G + + ++ +D E Sbjct: 177 SMDLWRIPAAGGEPQQMTRDDRANWF-PHPAPDGRSVLYLSYAPRTEG---HPRDRDVEL 232 Query: 385 LLVE---------------DSNLQAPTWSPSGRSLIFSRKK 410 L++ + P WSP G F R + Sbjct: 233 RLLDLADQSVRTLLSLFGGQGTINVPCWSPDGSRFAFVRYQ 273 >gi|18395017|ref|NP_564146.1| unknown protein [Arabidopsis thaliana] gi|5263318|gb|AAD41420.1|AC007727_9 F8K7.9 [Arabidopsis thaliana] gi|14334812|gb|AAK59584.1| unknown protein [Arabidopsis thaliana] gi|24030458|gb|AAN41381.1| unknown protein [Arabidopsis thaliana] gi|332192016|gb|AEE30137.1| uncharacterized protein [Arabidopsis thaliana] Length = 703 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%) Query: 282 MDIYSVDL----QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +DI ++++ + A ++LT T N SPD +IVF S R G + LY+M + + Sbjct: 466 IDILAINVDAPSPATAVKKLTTTGENNAFPWPSPDGKRIVFRSARSGTKNLYIMDAEKGE 525 Query: 338 QKRISQDKEASYFDPV--WSPQGDLIAFT---KFSGEKFA-IGVMKKDGSQERLLVEDSN 391 + + ++ D + WSP G+ I F +F G I V+ DG+ R L + N Sbjct: 526 SGGLFRLTNGNWNDTIATWSPDGNWIVFASNREFPGTLLMNIYVVHPDGTGLRKLAQ--N 583 Query: 392 LQA-----PTWSPSGRSLIFSRKKDGDTG------------SKLYSIDLNGRNET-LINT 433 L P +SP + ++F+ G + S++++++L+G T L + Sbjct: 584 LTGLVSMHPMFSPDSKRIVFTTIYAGISAEQIGNPHFNVPSSEIFTVNLDGSGLTRLTHN 643 Query: 434 PAYASDPQW 442 P W Sbjct: 644 SVEDGPPMW 652 >gi|328885898|emb|CCA59137.1| WD40 beta Propeller [Streptomyces venezuelae ATCC 10712] Length = 1097 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 24/220 (10%) Query: 199 DGANIRYLTPSR--DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA-PKRIGN 255 DG + L PS DQ++F R + +V Y D +LR + +D A P+ + Sbjct: 112 DGPVHQDLQPSALGDQLVFASRRDERRPQV-YLRAPDGSVLR---LTEGMDAANPRLTPD 167 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 RS++ F S A + D++ V RLT+T + + SP+ + Sbjct: 168 GRSVV----FDS----AEAATGGGRQRDLWRVRTDGTGLTRLTDTPANEVHPTVSPEGGR 219 Query: 316 IVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP-----QGDLIAFTKF-- 366 I + SD + Q+YV G D R++ +PVW+P D+IA+T Sbjct: 220 IAYSSDGDPLVGRQVYVRPLAGGDATRVTDPANGRATEPVWNPVDDAENRDVIAYTATGS 279 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 SG + + DG + W P G L+F Sbjct: 280 SGPRLRWTDGRADGPLLAGAQANWRTHGAAWLPDGDKLLF 319 >gi|168701004|ref|ZP_02733281.1| peptidase S41 [Gemmata obscuriglobus UQM 2246] Length = 657 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 11/123 (8%) Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + P+R+ + P FS +G+ S Q D +D+Y++ + A RLT+ + Sbjct: 55 KNPRRLTTDLGLEAYPVFSPDGQTIAFSAQYDGNVDVYTIPVTGGAPTRLTSHPSPDTVR 114 Query: 308 SYSPDSSQIVFESDRE----GKEQLYVMQSNGS--DQKRISQDKEASYFDPVWSPQGDLI 361 ++PD ++F S R QL+ + G Q I EA+Y SP GD I Sbjct: 115 GFTPDGKSVLFSSPRHVYSNRYTQLFTVPLTGGMPSQLPIPWGFEAAY-----SPDGDYI 169 Query: 362 AFT 364 A+T Sbjct: 170 AYT 172 >gi|86142431|ref|ZP_01060941.1| putative exported tricorn protease [Leeuwenhoekiella blandensis MED217] gi|85831183|gb|EAQ49640.1| putative exported tricorn protease [Leeuwenhoekiella blandensis MED217] Length = 1080 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 27/193 (13%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 P+R+ + P FS +GK S + D MDI+SV + RLT + +I+ + Sbjct: 59 PRRLTIDEGVESNPIFSPDGKTIAFSAEYDGNMDIFSVPVTGGVPTRLTFHPYPDIARDF 118 Query: 310 SPDSSQIVFESDR----EGKEQLYVMQSNGS--DQKRISQDKEASYFDPVWSPQGDLIAF 363 +PD +VF S R L+ + +G + I ASY S G IA+ Sbjct: 119 TPDGKSVVFASQRTLFTNRYTSLFTVPLSGGPVSELEIPNAYWASY-----SEDGKYIAY 173 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS-------------GRSLIFSRKK 410 T ++F + G+Q R+ + D+ Q P G S+ F + Sbjct: 174 TPIP-DRFNQWKHYRGGTQTRIYIYDTATQEVVEIPKPAAGSNDAQPEFIGNSVYFRSDR 232 Query: 411 DGDTGSKLYSIDL 423 DG+ LY+ DL Sbjct: 233 DGEF--NLYAYDL 243 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAF 363 ++SPDS I + SD G+ L++ N +D K I+ D Y WSP + IA+ Sbjct: 358 AWSPDSKHIAYFSDASGEYALHIKDQNSTDAAKAIALDGTGFYAHLHWSPDSEKIAY 414 >gi|222823241|ref|YP_002574814.1| translocation protein TolB precursor [Campylobacter lari RM2100] gi|222538462|gb|ACM63563.1| translocation protein TolB precursor [Campylobacter lari RM2100] Length = 399 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 68/124 (54%), Gaps = 3/124 (2%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+++ +Q Y T +++I +Y + + K I + + M++A S +GK+ L+++ Sbjct: 176 PKWANKEQNAFYFTAYEDEIPTLYKYNMKNKNITKIIAS-KGMMVASDVSDDGKKILLTM 234 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSN 334 + D+Y D+ S ++TN + I+++ ++ +IVF SDR G +++ + SN Sbjct: 235 APKDQPDVYLYDVDSKNLTQITNYMGIDVNGNFVDGDKKIVFVSDRLGYPNIFMQNLDSN 294 Query: 335 GSDQ 338 ++Q Sbjct: 295 LTEQ 298 >gi|291006476|ref|ZP_06564449.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] Length = 1067 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 28/168 (16%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +++V ++ RLT AS++PD S +V + EG LY++ + G+ +R+++ Sbjct: 16 LWAVPIRGGEGRRLTPHAMEATQASWAPDGSSVVCQVYSEGNFHLYLVPTGGT-PRRLTE 74 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL------LVEDSNLQAPTW 397 + +P +SP G IAF+ G ++ I + D + R+ + E+S P W Sbjct: 75 GPH-DHREPSFSPDGRRIAFSSDRGGRYGIHIF--DLATGRIAPWTAPIGEESQ---PRW 128 Query: 398 SPSG--------RSLIFSRKKDGD-------TGSKLYSIDLNGRNETL 430 SP G ++I + + G+ TG++LY+ N T+ Sbjct: 129 SPDGSRMAVVVDNAVIDAVNEAGERTRLAEATGARLYAPGWNPEGSTI 176 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 8/169 (4%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G R LTP + + ++P+ V Y E +YL+ T P+R+ Sbjct: 23 GGEGRRLTPHAMEAT-QASWAPDGSSVVCQVYS-EGNFHLYLVPT--GGTPRRLTEGPHD 78 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P FS +G+R S + I+ DL + T + +SPD S++ Sbjct: 79 HREPSFSPDGRRIAFSSDRGGRYGIHIFDLATGRIAPWTAPIGEESQPRWSPDGSRMAVV 138 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 D + + ++ R+++ A + P W+P+G IA+ + G Sbjct: 139 VD----NAVIDAVNEAGERTRLAEATGARLYAPGWNPEGSTIAYVRMDG 183 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIAFTKFSG 368 SPD S +V ++ L+ + G + +R++ EA+ W+P G + +S Sbjct: 2 SPDGSTVVVDA----LSTLWAVPIRGGEGRRLTPHAMEATQAS--WAPDGSSVVCQVYSE 55 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + ++ G+ RL + + P++SP GR + FS + G G ++ + GR Sbjct: 56 GNFHLYLVPTGGTPRRLTEGPHDHREPSFSPDGRRIAFSSDRGGRYGIHIFDL-ATGRIA 114 Query: 429 TLINTPAYASDPQW 442 S P+W Sbjct: 115 PWTAPIGEESQPRW 128 >gi|15234357|ref|NP_192096.1| tolB protein-related [Arabidopsis thaliana] gi|4558556|gb|AAD22649.1|AC007138_13 predicted protein of unknown function [Arabidopsis thaliana] gi|7268571|emb|CAB80680.1| predicted protein of unknown function [Arabidopsis thaliana] gi|29824389|gb|AAP04154.1| unknown protein [Arabidopsis thaliana] gi|110742479|dbj|BAE99158.1| hypothetical protein [Arabidopsis thaliana] gi|332656688|gb|AEE82088.1| tolB-related protein [Arabidopsis thaliana] Length = 652 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 15/95 (15%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVM-----QSNGSDQKRISQDKEASYFD--PVWSP 356 N S SPD IVF S R G + LY++ +SNG +R++ + + D P WSP Sbjct: 447 NAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNGGGIRRLT---DGPWIDTMPCWSP 503 Query: 357 QGDLIAFT--KFSGEK---FAIGVMKKDGSQERLL 386 +GDLI F+ + + E F V++ DG+ R + Sbjct: 504 KGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLRRI 538 Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 14/184 (7%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQ 290 DI + T P R+ P +GKR ++ ++ ++IY DL+ Sbjct: 220 DIPENFTEYTDFPITPIRVTPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIY--DLE 277 Query: 291 SNATERLTNTL---FINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQ 343 + + +T +L F + + SPDS + + R +G+ + ++S S K + Sbjct: 278 NTTFQPVTESLNPSFHHYNPFVSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRL 337 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + F P SP GDLIA I V K DGS+ L++D +WSP+ R Sbjct: 338 LRINGSF-PSSSPNGDLIALNSDFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERH 396 Query: 404 LIFS 407 +I++ Sbjct: 397 VIYT 400 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSS-QIVFESDREGKEQLYVMQSNGSDQK 339 D++S+++ ++ RLT+ + +N +A + D S +VF S+R G ++Y +S S + Sbjct: 19 GFDVFSLNIATSVERRLTDGVSVNFNAQFVNDKSDDVVFVSERNGSARIYKTRSGISKPE 78 Query: 340 RISQDKEASYFD 351 +I E+ + D Sbjct: 79 QIPGAPESYFHD 90 >gi|20259480|gb|AAM13860.1| unknown protein [Arabidopsis thaliana] Length = 657 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 15/95 (15%) Query: 304 NISASYSPDSSQIVFESDREGKEQLYVM-----QSNGSDQKRISQDKEASYFD--PVWSP 356 N S SPD IVF S R G + LY++ +SNG +R++ + + D P WSP Sbjct: 452 NAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNGGGIRRLT---DGPWIDTMPCWSP 508 Query: 357 QGDLIAFT--KFSGEK---FAIGVMKKDGSQERLL 386 +GDLI F+ + + E F V++ DG+ R + Sbjct: 509 KGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLRRI 543 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 14/184 (7%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQ 290 DI + T P R+ P +GKR ++ ++ ++IY DL+ Sbjct: 225 DIPENFTEYTDFPITPIRVTPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIY--DLE 282 Query: 291 SNATERLTNTL---FINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQ 343 + + +T +L F + + SPDS + + R +G+ + ++S S K + Sbjct: 283 NTTFQPVTESLNPSFHHYNPFVSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRL 342 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + F P SP GDLIA I V K DGS+ L++D +WSP+ R Sbjct: 343 LRINGSF-PSSSPNGDLIALNSDFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERH 401 Query: 404 LIFS 407 +I++ Sbjct: 402 VIYT 405 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSS-QIVFESDREGKEQLYVMQSNGSDQK 339 D++S+++ ++ RLT+ + +N +A + D S +VF S+R G ++Y +S S + Sbjct: 24 GFDVFSLNIATSVERRLTDGVSVNFNAQFVNDKSDDVVFVSERNGSARIYKTRSGISKPE 83 Query: 340 RISQDKEASYFD 351 +I E+ + D Sbjct: 84 QIPGAPESYFHD 95 >gi|268317858|ref|YP_003291577.1| peptidase S41 [Rhodothermus marinus DSM 4252] gi|262335392|gb|ACY49189.1| peptidase S41 [Rhodothermus marinus DSM 4252] Length = 1067 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 12/159 (7%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N R P +G++ + S Q D ++ V + +RLT +SPD Sbjct: 15 NPRPFPRYPAIDPSGQQIVFSYQGD----LWLVPVTGGMAQRLTVHPAYEAYPRWSPDGR 70 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI-----AFTKFSGE 369 +I F SDR G + L+VM+ GS +R++ A W+ G L+ F + E Sbjct: 71 RIAFTSDRYGHDDLFVMELFGSPPRRLTY-HSADDILTDWTRDGRLLFQTRRLFVQVERE 129 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 + G+ R+L + + QA T SP GR L F R Sbjct: 130 AEIHAIPDTGGTPVRIL-DATGFQA-TLSPDGRFLAFER 166 >gi|294777420|ref|ZP_06742871.1| WD40-like protein [Bacteroides vulgatus PC510] gi|294448488|gb|EFG17037.1| WD40-like protein [Bacteroides vulgatus PC510] Length = 1084 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + SNG +++ +ASY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPSNGGTATQLTT--QASYECSPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM DG R L S + P T++ G ++FS S +L Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT S +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPSNGGTATQLTTQASYECSPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|154493795|ref|ZP_02033115.1| hypothetical protein PARMER_03138 [Parabacteroides merdae ATCC 43184] gi|154086408|gb|EDN85453.1| hypothetical protein PARMER_03138 [Parabacteroides merdae ATCC 43184] Length = 1079 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPATGGEARRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M G + R+ S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPVTGGEPLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGSRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VEKEGGLSEAIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 77/160 (48%), Gaps = 15/160 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFESDRE 323 S +G+R +++ + + ++++ ++ T+ +T + + +A +SPD IV+ SD Sbjct: 322 LSPDGERLVVTARGE----VFNLPVEKGVTKNITRSPGAHDRNAQWSPDGKFIVYISDAT 377 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G+ +LY+ + G + ++++D + SP + +T + V K + Sbjct: 378 GETELYMQDAIGGEHVQLTKDNDTYIRGFELSPDSKAVVYTDRKNRMNLLDVATK---KV 434 Query: 384 RLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 L++D + T+SP + L ++R TG+ YSI Sbjct: 435 TTLLQDPMGEPRGVTFSPDSKWLTYTR-----TGNNEYSI 469 >gi|116624547|ref|YP_826703.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227709|gb|ABJ86418.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 903 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 15/184 (8%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISAS 308 +R+ N + P S +G + + +A +DI+ + RLT + S Sbjct: 333 RRVTNTSGLTAFPTLSRDGTLLAFASDRSDAGNLDIWIQQIGGRDPFRLTTDDADDTDPS 392 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFS 367 SPD +++ F S+R G +YV+ S G + + A F SP G IA+ Sbjct: 393 ISPDGTRVAFRSERNGG-GIYVVPSMGGEAALLVPGGRAPRF----SPDGRWIAYWAGRE 447 Query: 368 GEKFAIG-----VMKKDGSQERLLVED-SNLQAPTWSPSG-RSLIFSRKKDGDTGSKLYS 420 E G V++ G Q R L D +P WSP G R L +R+ D ++ Sbjct: 448 SESLLPGTARVFVIESGGGQPRQLGTDLGTATSPIWSPDGDRVLALARRDLSDPAPDWWT 507 Query: 421 IDLN 424 + L Sbjct: 508 LPLQ 511 >gi|269926814|ref|YP_003323437.1| peptidase S9 prolyl oligopeptidase active site domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790474|gb|ACZ42615.1| peptidase S9 prolyl oligopeptidase active site domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 594 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%) Query: 309 YSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-- 364 +SPD S++VF D G E+ ++ + +G + I + + WSP G IA+T Sbjct: 64 FSPDGSRLVFIMDAGGNERHGIHGVLLDGYVHEPIQPEPNVIHLWGDWSPDGRRIAYTSN 123 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 K F + + DG ++++D + P WSP R LI SR + + + +Y +DL Sbjct: 124 KRDPRFFDVYIKSLDGGDPIMVLQDDGTNSVPAWSPDARHLIVSRSET-NLDNNIYLLDL 182 Query: 424 NGRNETLIN 432 + L++ Sbjct: 183 ESGDRKLLS 191 >gi|239926647|ref|ZP_04683600.1| hypothetical protein SghaA1_00330 [Streptomyces ghanaensis ATCC 14672] Length = 1101 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P F G R + D+ +VDL + A ERLT ++ + SPD +I + S+ Sbjct: 106 PSFFPGGARVAFQSFRRGTYDLCAVDLATGAVERLTRGTQYDVEPAVSPDGRRIAYVSED 165 Query: 323 EGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +G L + + G + SY P W P G +A+ Sbjct: 166 DGTSVLRCLDLATGRTRTLAGTGDGRSYRSPTWHPGGRSLAY 207 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD IV SDR G QL+ +G ++++ D+ P SP G IAF +G Sbjct: 387 PDGRAIVHSSDRTGVPQLWRHPLDGGPPEQLT-DRPGGALLPSVSPSGRQIAFQDEAG-- 443 Query: 371 FAIGVMKKD--GSQERLLVEDSNLQAPTWSPSGRSLIFS 407 A+ V+ D S+E L V+D +A +WSP G L + Sbjct: 444 -ALHVLDLDDGTSREVLPVQDHAGKA-SWSPDGTRLSLA 480 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 4/134 (2%) Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D ++ V A RLT+ S+ P +++ F+S R G L + Sbjct: 75 IVHDAVNALWLVPPSGGAARRLTDDAEDATWPSFFPGGARVAFQSFRRGTYDLCAVDLAT 134 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNL 392 +R+++ + +P SP G IA+ + + + R L + + Sbjct: 135 GAVERLTRGTQYD-VEPAVSPDGRRIAYVSEDDGTSVLRCLDLATGRTRTLAGTGDGRSY 193 Query: 393 QAPTWSPSGRSLIF 406 ++PTW P GRSL + Sbjct: 194 RSPTWHPGGRSLAY 207 >gi|309356046|emb|CAP37634.2| CBR-TAG-10 protein [Caenorhabditis briggsae AF16] Length = 451 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ VD N +RLTN+ + SPD ++I F S R G +LYVM ++GS+ R++ Sbjct: 190 DIFKVDRYGNFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTRVT 249 Query: 343 QD---KEASYFDP 352 S+F P Sbjct: 250 NTLGYDGGSFFTP 262 >gi|302381963|ref|YP_003817786.1| peptidase S41 [Brevundimonas subvibrioides ATCC 15264] gi|302192591|gb|ADL00163.1| peptidase S41 [Brevundimonas subvibrioides ATCC 15264] Length = 1113 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 52/284 (18%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +L S ++VSG + ++ QIL +P S +Q Y D+ Sbjct: 11 LLLASSALVSGGLAGEAA--------------AQSQILQQPAISADQVAFVYGG----DL 52 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 V R R +G + AP FS +G+ + + D +D+Y+V R Sbjct: 53 WTVARSGGRAARLTIGVG----IESAPIFSPDGRSIAFTGEYDGNIDVYTVPATGGQPRR 108 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKE---QLYVMQSNG----------SDQKRISQ 343 +T + + +SPD S+++F S+R QL+ + + G + ++S Sbjct: 109 ITWHPGNDAAVGWSPDGSRVLFRSNRSAASRYTQLFSVSAEGGAPDVMPLPYAHSGQMSP 168 Query: 344 DKEASYFDPVWSPQ-----GDLIAFTKFSGEKFA-IGVMKKDG--SQERLLVEDSNLQAP 395 D A + P ++P G+ A+ + G + + I V DG + E E SN +P Sbjct: 169 DGRAVAYSP-FAPAFGFEFGNYTAWGNYRGGRASTIKVTTLDGLATVEVPQAEGSNDLSP 227 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 W G + F +DG +YS D T P +A+D Sbjct: 228 VW--MGGKIYFLSDRDGPI--SIYSYD----PATRAVAPVWAND 263 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 21/172 (12%) Query: 283 DIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KR 340 +I + + + LTNT + S ++SPD + + SD G L+V NG ++ Sbjct: 338 EILTAPVTRGSVRNLTNTPGVMERSPAWSPDGQSVAYFSDESGLYALHVAPQNGEGAVRK 397 Query: 341 ISQDKEASYF-DPVWSPQGDLIAFT----------KFSGEKFAIGVMKKDGSQERLLVED 389 E +Y+ +PVWSP IAF+ +G +G + G V+ Sbjct: 398 FPLAAEPTYYANPVWSPDSKKIAFSDNHLRNWVLDTTTGRLSEVGTAQTHGG---FTVQS 454 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGD-TGSKLYSIDLNGRNETLINTPAYASDP 440 +++ WSP + L++SR T LYS+ +G + L + A DP Sbjct: 455 TDM---AWSPDSKFLVYSRNGANRLTVLNLYSV-ADGSSTALTSNLGDARDP 502 >gi|226228072|ref|YP_002762178.1| hypothetical protein GAU_2666 [Gemmatimonas aurantiaca T-27] gi|226091263|dbj|BAH39708.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 1174 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 43/83 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y++ + RLT+ + + +SPD ++VF SDR G E +++M + D +++ Sbjct: 79 DLYTLPIGGGKATRLTSGMAYDAQPRFSPDGKKVVFVSDRSGGENVWLMSLDQKDTTQLT 138 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 + Y P + P G + ++ Sbjct: 139 RGNNNMYVSPEFDPDGKYVIVSR 161 >gi|56460919|ref|YP_156200.1| HTH/TolB-like domain-containing protein [Idiomarina loihiensis L2TR] gi|56179929|gb|AAV82651.1| N-terminal winged-HTH domain fused to TolB-like domain [Idiomarina loihiensis L2TR] Length = 665 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 12/187 (6%) Query: 190 KNSLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV----YLMDT 244 K +L D+DG + I L+ S D + N+ + A + + + + + L Sbjct: 312 KLALAGFDQDGVSKIFSLSLSSDVEALSEIIALNKNRYFLAWHPNGEAMVISDGRLLSKV 371 Query: 245 RIDRAPKRIGNFRS--MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN-ATERLTNTL 301 +D + RI N+ S + P+F+ +G + L S+ K + DI + L SN +L N+ Sbjct: 372 WMDGSSSRI-NYDSYDFVQHPQFTPSGDQILFSLAKIDT-DIEQMSLTSNDQVTKLVNSN 429 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGD 359 ++ S SPD S++ F S R+G Q+YV+ N + + + ++KE PVW+ + Sbjct: 430 TVDREPSLSPDKSKLAFISQRKGFPQVYVLDLNTQEIQLVYENKERLLGVSRPVWNANNN 489 Query: 360 LIAFTKF 366 + F+ + Sbjct: 490 RLGFSNY 496 >gi|255321984|ref|ZP_05363134.1| protein TolB [Campylobacter showae RM3277] gi|255301088|gb|EET80355.1| protein TolB [Campylobacter showae RM3277] Length = 424 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/250 (21%), Positives = 109/250 (43%), Gaps = 20/250 (8%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SE V++ V+ R G NI F +Q Y+ Y ++++ +Y Sbjct: 172 SEIVIADYTLTYQKVLVRGGLNI-----------FPKWVGADQSAFYYSDYSGKNLV-LY 219 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 D + K + + M++A S NG + L+++ + DIY DL S ++TN Sbjct: 220 RYDVASGQKTKILDSKGGMLIASDVSQNGDKILLTMAPQDQPDIYIYDLNSKRLSQVTNY 279 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-----SQDKEASYFDP-VW 354 I+++ ++ ++VF SDR G ++ +GS +++ + + ++Y + V+ Sbjct: 280 SGIDVNGNFVDGDRRVVFVSDRLGYPNVFAQNVDGSGFEQLVYHGKNNNSVSTYQNYIVY 339 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 S + D + F F I ++ R L P +S G+S++F ++ G + Sbjct: 340 SSRED--GKSSFGTRDFNIYMISTQTDYIRQLTASGKNLYPRFSSDGQSVVFIKELGGQS 397 Query: 415 GSKLYSIDLN 424 + ++ N Sbjct: 398 SLGIIRVNEN 407 >gi|255531812|ref|YP_003092184.1| hypothetical protein [Pedobacter heparinus DSM 2366] gi|255344796|gb|ACU04122.1| WD40 domain protein beta Propeller [Pedobacter heparinus DSM 2366] Length = 1060 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 19/201 (9%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSN----------ATERLTNTLFI 303 N +M +AP S +GK +KD +D++ D ++ A + + F+ Sbjct: 296 NAGNMNVAPSISPDGKYLAFLSEKDLFGIDLFLADAKTGKIIRKLSSQVANSHIDDFNFL 355 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++SPD Q F +GK QL ++ NGS R A + + WSP GD IA Sbjct: 356 ESAGTWSPDGKQFAFSIFSKGKNQLMIINIDNGSVALRADMGDVAQFGNLSWSPNGDDIA 415 Query: 363 FTKF-SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT---GSKL 418 F+ G+ K ++ + + AP +S G+ + FS + T + + Sbjct: 416 FSGMIQGQSDIFSYNLKTKKVTQITNDAYSDYAPAYSQDGKKIAFSSDRASITKNNNTAV 475 Query: 419 YSIDL---NGRNETLINTPAY 436 +SI+L + ++TL + P + Sbjct: 476 HSINLSIYDIESKTLTDIPVF 496 >gi|21244171|ref|NP_643753.1| hypothetical protein XAC3446 [Xanthomonas axonopodis pv. citri str. 306] gi|21109805|gb|AAM38289.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 784 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 7/143 (4%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++ S SPD + + + S DR G L N + + S P WSP G Sbjct: 233 DLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQ 292 Query: 361 IAFTKFSGEKFA-IGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IAF++ + + I + G S+E + + +++ + +WSP GR+L+F Sbjct: 293 IAFSRQAPDGSCRIMIAAATGPAASRELVRCDGADMLSFSWSPDGRALVFGSMTGTRGAV 352 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 ++ +DL R ++ PA A D Sbjct: 353 RMRRLDLATRQWQALDYPAQAGD 375 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 13/225 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + P +S +G++ Sbjct: 234 LTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQI 293 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + + E + +S S+SPD +VF S G + Sbjct: 294 AFSRQAPDGSCRIMIAAATGPAASRELVRCDGADMLSFSWSPDGRALVFGSMTGTRGAVR 353 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + + +A FD P +SP G+ I F + + + G ERL Sbjct: 354 MRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGDLWRIPAEGGVAERL 413 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ++++++ +W P G LIF R+ D + ++LY +DL R+ +L Sbjct: 414 THDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL--RDHSL 454 >gi|291434963|ref|ZP_06574353.1| amidohydrolase [Streptomyces ghanaensis ATCC 14672] gi|291337858|gb|EFE64814.1| amidohydrolase [Streptomyces ghanaensis ATCC 14672] Length = 1084 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P F G R + D+ +VDL + A ERLT ++ + SPD +I + S+ Sbjct: 89 PSFFPGGARVAFQSFRRGTYDLCAVDLATGAVERLTRGTQYDVEPAVSPDGRRIAYVSED 148 Query: 323 EGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +G L + + G + SY P W P G +A+ Sbjct: 149 DGTSVLRCLDLATGRTRTLAGTGDGRSYRSPTWHPGGRSLAY 190 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD IV SDR G QL+ +G ++++ D+ P SP G IAF +G Sbjct: 370 PDGRAIVHSSDRTGVPQLWRHPLDGGPPEQLT-DRPGGALLPSVSPSGRQIAFQDEAG-- 426 Query: 371 FAIGVMKKD--GSQERLLVEDSNLQAPTWSPSGRSLIFS 407 A+ V+ D S+E L V+D +A +WSP G L + Sbjct: 427 -ALHVLDLDDGTSREVLPVQDHAGKA-SWSPDGTRLSLA 463 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 4/134 (2%) Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D ++ V A RLT+ S+ P +++ F+S R G L + Sbjct: 58 IVHDAVNALWLVPPSGGAARRLTDDAEDATWPSFFPGGARVAFQSFRRGTYDLCAVDLAT 117 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNL 392 +R+++ + +P SP G IA+ + + + R L + + Sbjct: 118 GAVERLTRGTQYD-VEPAVSPDGRRIAYVSEDDGTSVLRCLDLATGRTRTLAGTGDGRSY 176 Query: 393 QAPTWSPSGRSLIF 406 ++PTW P GRSL + Sbjct: 177 RSPTWHPGGRSLAY 190 >gi|326522999|dbj|BAJ88545.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 706 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 14/139 (10%) Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 D+ IY V ++ +LT N S SPD +VF S R G + LY+M + + Sbjct: 473 NDDDGSIYQVSIK-----KLTVGGENNAFPSPSPDGKWLVFRSGRSGHKNLYIMDAEEGE 527 Query: 338 QKRISQDKEASYFDPV--WSPQGDLIAFT----KFSGEKFAIGVMKKDGSQERLLVEDSN 391 I + + + D + WSP G+ IAF G FAI ++ + + R +V ++ Sbjct: 528 AGGIRRLTDGPWTDTMCNWSPDGEWIAFASDRHNPGGGSFAIYMVHPNSTGLRRVVHSAD 587 Query: 392 ---LQAPTWSPSGRSLIFS 407 P +SP + ++F+ Sbjct: 588 GGRTNHPWFSPDSKRMVFT 606 >gi|268532750|ref|XP_002631503.1| C. briggsae CBR-TAG-10 protein [Caenorhabditis briggsae] Length = 424 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ VD N +RLTN+ + SPD ++I F S R G +LYVM ++GS+ R++ Sbjct: 191 DIFKVDRYGNFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTRVT 250 Query: 343 QD---KEASYFDP 352 S+F P Sbjct: 251 NTLGYDGGSFFTP 263 >gi|262196570|ref|YP_003267779.1| hypothetical protein Hoch_3384 [Haliangium ochraceum DSM 14365] gi|262079917|gb|ACY15886.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365] Length = 398 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 17/162 (10%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ----------SNGSDQKRISQDK 345 RLT+ F + ++S D S +VF S+R G ++ + + G+ + I+ ++ Sbjct: 144 RLTSGDFEDRDPAWSADGSAVVFSSNRGGSFAIWRQELSMSDYGWPIAAGAPSQLIASER 203 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 A F P +P G IA+T+ E A + + + L E + P WSP GR L Sbjct: 204 AA--FHPAPAPDGSAIAYTEADLESGASEIWLWSAGERQRLSEGPSDSTPAWSPDGRRLA 261 Query: 406 FSR--KKDGDTGS-KLYSIDLNGRNET-LINTP-AYASDPQW 442 F+ +++G L++++ +G LI P A + P W Sbjct: 262 FAGLVEREGQPPDVDLFTMNADGSGRAPLIAEPLALQTHPVW 303 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 18/162 (11%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKRISQDKEASYF 350 R+ + S S+SPD IVF S R G+E L+++ + Q R + Sbjct: 95 RIAQVPVRDNSPSWSPDGRWIVFASSR-GREDMMQTSLWLVAARLDAQPRRLTSGDFEDR 153 Query: 351 DPVWSPQGDLIAFTKFSGEKFAI----------GVMKKDGSQERLLVEDSNLQAPTWSPS 400 DP WS G + F+ G FAI G G+ +L+ + P +P Sbjct: 154 DPAWSADGSAVVFSSNRGGSFAIWRQELSMSDYGWPIAAGAPSQLIASERAAFHPAPAPD 213 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 G ++ ++ + D ++G+ + G + L P+ S P W Sbjct: 214 GSAIAYT-EADLESGASEIWLWSAGERQRLSEGPSD-STPAW 253 >gi|125546375|gb|EAY92514.1| hypothetical protein OsI_14253 [Oryza sativa Indica Group] Length = 682 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D ++ + ++LT N S SPD +VF S R G + LY++ + + I + E Sbjct: 461 DDETISMKKLTVGGENNAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEG 520 Query: 348 SYFDPV--WSPQGDLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWS 398 + D + WSP G+ IAF FAI ++ +G+ R +V + P + Sbjct: 521 PWSDTMCNWSPDGEWIAFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGDGGRTNHPWFG 580 Query: 399 PSGRSLIFS 407 P +SL+F+ Sbjct: 581 PDSKSLVFT 589 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 29/163 (17%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GK + + ++Y +D + + RLT + + ++SPD I F Sbjct: 480 PSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWIAFA 539 Query: 320 SDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW-SPQGDLIAFT---------- 364 SDR G +Y++ NG+ +R+ + + W P + FT Sbjct: 540 SDRHAPGSGSFAIYMVHPNGTGLRRVVHSGDGGRTNHPWFGPDSKSLVFTSDYAAVSAEP 599 Query: 365 -------KFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSP 399 + GE F + + DGS R L +S P+W+P Sbjct: 600 VSNPHHYQPYGEIFTVHI---DGSNIRRLTHNSFEDGTPSWTP 639 >gi|153004922|ref|YP_001379247.1| WD40 domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028495|gb|ABS26263.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. Fw109-5] Length = 1206 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 5/131 (3%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 + PR S +G+R +Q++ D+ + R+T+ ++ S +++PD ++F Sbjct: 481 VYQPRVSPDGRRIAFELQEEGRRDL--ALWEDGRVTRITDDGALDTSPAWTPDGRHLLFA 538 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-- 377 SDR G LY ++ D +++ + E P SP G IAF +S + + + Sbjct: 539 SDRGGLYNLYAWEAATGDVAQVT-NVETGALQPDVSPDGRTIAFLLYSRAGYDVATIPFA 597 Query: 378 KDGSQERLLVE 388 +G E L E Sbjct: 598 PEGWLEPLPAE 608 >gi|145237008|ref|XP_001391151.1| hypothetical protein ANI_1_1414064 [Aspergillus niger CBS 513.88] gi|134075616|emb|CAK39282.1| unnamed protein product [Aspergillus niger] Length = 681 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 47/236 (19%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G+KG +F+ + G + L + + DG+N R L S + FSP+ + + Sbjct: 64 GQKG------VFMMNRIAPGT--SELYIANTDGSNERPLL-SNPVYEYHASFSPDVEWIT 114 Query: 228 YATY----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK-RALISVQKDEAM 282 + + + DI RV + + S++++P NG+ A +S + Sbjct: 115 FTSERNGDGNSDIYRVRTNGSDLQELVATPAVEDSVVISP----NGRLAAYVSTANNMKA 170 Query: 283 DIYSVDLQSNATERLTNTLFINISAS---------YSPDSSQIVFESDRE---------- 323 +I+ +DLQ+ A LTNT ++S +SPD I F SDR Sbjct: 171 NIWILDLQTGAQWNLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSDRNTQWDGHGVPT 230 Query: 324 -----GKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 G E LY ++ NGSD ++I S P WS G I + + + E Sbjct: 231 FLGRTGWETTQELSLYAIRPNGSDFRQIISKPYYSLGSPKWSADGKRIVYYEMTRE 286 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 35/185 (18%) Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEAS 348 SN L+N ++ AS+SPD I F S+R +G +Y +++NGSD + + A Sbjct: 89 SNERPLLSNPVY-EYHASFSPDVEWITFTSERNGDGNSDIYRVRTNGSDLQELVA-TPAV 146 Query: 349 YFDPVWSPQGDLIAFTKFSGE-KFAIGVMK-KDGSQERLL-----VEDSNLQA----PTW 397 V SP G L A+ + K I ++ + G+Q L +S+L P W Sbjct: 147 EDSVVISPNGRLAAYVSTANNMKANIWILDLQTGAQWNLTNTPTTAANSSLMESYLRPAW 206 Query: 398 SPSGRSLIFSRKKD------------GDTGSK------LYSIDLNGRN-ETLINTPAYA- 437 SP G + FS ++ G TG + LY+I NG + +I+ P Y+ Sbjct: 207 SPDGEWIAFSSDRNTQWDGHGVPTFLGRTGWETTQELSLYAIRPNGSDFRQIISKPYYSL 266 Query: 438 SDPQW 442 P+W Sbjct: 267 GSPKW 271 >gi|255531799|ref|YP_003092171.1| amidohydrolase [Pedobacter heparinus DSM 2366] gi|255344783|gb|ACU04109.1| amidohydrolase [Pedobacter heparinus DSM 2366] Length = 1084 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 27/183 (14%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + + L++ +I +SP+ I + SD+ G + +++M +GS +++IS Sbjct: 71 DLYIMPISGGSAVLLSSGPAWDIQPRFSPNGRYISYTSDKSGADNIWIMNRDGSGKRQIS 130 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSNLQ- 393 ++ + W P + LIA F+ GE + + +G Q L + N Q Sbjct: 131 KETFRLLNNATWMPNSEYLIARKHFTGTRSLGAGEMWMYSIYGGEGVQ---LTKRKNDQQ 187 Query: 394 ---APTWSPSGRSLIFSR--------KKDGDTGSKLYSI---DL-NGRNETLINTPAYAS 438 P SP G+ L FS + D +Y+I DL +G+ +LI P A+ Sbjct: 188 DAGEPNVSPDGKYLYFSEDMSPGPNFEYSKDPNGMIYAIRQLDLTSGKITSLIAQPGGAA 247 Query: 439 DPQ 441 PQ Sbjct: 248 RPQ 250 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 15/161 (9%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 FEP S + + V Y T+ DE + D + + + + +P FS+ G + + Sbjct: 405 FEPEISADGKSVIYTTWSDEFKGAIKKTDLKSGKT-VTLTTEKGFYYSPSFSNKGDKIVF 463 Query: 275 --SVQKD-------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 V D I+++ +T I ++ D S+I F+S +GK Sbjct: 464 RKGVGNDVLGYAFGRGTGIFTMPASGGPKTLITEN---GIRPKFNADDSRIYFQSSEDGK 520 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + + NG++++ A+ F P SP G +AFT+ Sbjct: 521 KAFKSIDLNGANERTHYTSTYATQFAP--SPDGKWMAFTEL 559 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y DL + ER++ + S D +++ + + + + + +++ K ++ Sbjct: 384 LYKKDLPNGLPERVSKGIDFEFEPEISADGKSVIYTTWSD-EFKGAIKKTDLKSGKTVTL 442 Query: 344 DKEAS-YFDPVWSPQGDLIAFTKFSGE---KFAIG------VMKKDGSQERLLVEDSNLQ 393 E Y+ P +S +GD I F K G +A G M G + L+ E N Sbjct: 443 TTEKGFYYSPSFSNKGDKIVFRKGVGNDVLGYAFGRGTGIFTMPASGGPKTLITE--NGI 500 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS------DPQWVGFMD 447 P ++ + F +DG K SIDLNG NE T YA+ D +W+ F + Sbjct: 501 RPKFNADDSRIYFQSSEDGKKAFK--SIDLNGANERTHYTSTYATQFAPSPDGKWMAFTE 558 >gi|332662796|ref|YP_004445584.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] gi|332331610|gb|AEE48711.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] Length = 1069 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 12/155 (7%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 ++ P +++G + S Q D I++V RLT + YSPD +I F Sbjct: 24 LLRHPAINNDGSQIAFSFQGD----IWTVASSGGKATRLTIHEAYEGNPMYSPDGKKIAF 79 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI-----AFTKFSGEKFAI 373 R G ++VM + G KR++ W+ ++ F + G Sbjct: 80 SGARYGNNDVFVMPAEGGSPKRLTYHSAGDNV-AGWASNSQIVFSTNREFRQIGGHPEIY 138 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 G+ G++ RLL D P++SP GR + R Sbjct: 139 GINASGGTESRLL--DIEAYDPSYSPDGRFIALVR 171 >gi|284042934|ref|YP_003393274.1| hypothetical protein Cwoe_1471 [Conexibacter woesei DSM 14684] gi|283947155|gb|ADB49899.1| hypothetical protein Cwoe_1471 [Conexibacter woesei DSM 14684] Length = 311 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 43/247 (17%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGK----RAL 273 +PN + +A+A TRI RA R + R + + P S +G+ R Sbjct: 82 TPNGRTIAFA------------RGTRIFRAGPRGADARQVGGGMTPLVSPDGRAVTWRGE 129 Query: 274 ISVQKDEA------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE- 326 I VQ+ + + +++ ++N R T + S+++ +++V ++ R G E Sbjct: 130 IQVQQCDPFGGCAQVQTFALFRRANGEARPTVVEAYSYSSAWW--GTRLVSQNTRRGAEA 187 Query: 327 -QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---FSGE-----KFAIGVMK 377 ++ ++ +G + ++ D SY P SP G L+A +G+ K + + Sbjct: 188 DEISLLDGDGRPVRSLTNDPARSYTSPALSPDGSLLAAISEPLPTGDADPTFKGRVELFD 247 Query: 378 KD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 D G++ R+L E + P++SP GR L F+R +D LY + G + Sbjct: 248 PDTGARVRVLTESATDDVPSFSPDGRQLAFNRGRD------LYVVATRGGRARRVAANFV 301 Query: 437 ASDPQWV 443 S P W Sbjct: 302 LSGPSWA 308 >gi|190575753|ref|YP_001973598.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190013675|emb|CAQ47310.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 776 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 10/154 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 APR+S +GK L+ V+ + D++ + E+LTN ++ D IVF Sbjct: 370 APRYSPDGK-WLVFVRNPQMGDLWRMPAGGGELEQLTNESAEQRGWAWLGDGRSIVFGRR 428 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVW---SPQGDLIAFTKFSGEKFAIGVMKK 378 + + +LY + ++R +D A D W S GD++AF + V Sbjct: 429 VDSEVRLYYLDV----ERRTLRD--AGLDDAQWPAVSRHGDVLAFVHRRAQFGVFKVPMA 482 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 GS ERL P +P GR L+F+ + G Sbjct: 483 GGSAERLFASSGRDGQPMAAPDGRQLVFTSDRSG 516 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 297 LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRIS-QDKEASYFDP 352 +T T + SPD SQ+ +E D G + V S + ++++ K AS P Sbjct: 217 ITATSGFETYPTLSPDGSQVAYEGANEDGAGGGVIKVQTSGNAPARQLALPPKGASDRFP 276 Query: 353 VWSPQGDLIAFTKF---SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 WSP G IAF +F G + I G ++ + + L + W+P GR L+F Sbjct: 277 SWSPDGREIAFARFGADGGCQVLIASATGGGVRQATRCDGTELLSFDWTPDGRGLVFG 334 >gi|228470863|ref|ZP_04055710.1| MdsD protein [Porphyromonas uenonis 60-3] gi|228307430|gb|EEK16440.1| MdsD protein [Porphyromonas uenonis 60-3] Length = 1097 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY VD LT + ++SPD +I F S+R+G +Y M + G D KRI+ Sbjct: 53 DIYIVDAIGGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDGHRSIYTMSALGGDVKRIT 112 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 S+ ++P G I ++ Sbjct: 113 HHSGNSHTVECYTPDGRFIIMSE 135 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 44/168 (26%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 SS+GK+ ++ D +Y ++ T+R+T + S ++SPDS +V++S R+GK Sbjct: 334 SSDGKQLAFIMRGD----VYVTSVEHGTTKRITQSSGAEESVTWSPDSKTLVYDSRRDGK 389 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFD-------------------PVWSPQGDLIAFTKF 366 LY + I+ DKE + P +SP G IAF Sbjct: 390 HILY--------KATIASDKELDFASATIIKEEPLMPECKMEQALPQYSPDGKQIAFV-- 439 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAP--------TWSPSGRSLIF 406 G++ I D + ++L S P WSP R + F Sbjct: 440 -GDRKCI--YTYDIASKKLTQVTSGKDQPEMHGYISFEWSPDSRWIAF 484 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G+ IAF + G+ + + + G + RLL D PTWSP G+ + F +DG Sbjct: 40 SPDGNQIAFC-YQGDIYIVDAI---GGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDG 94 >gi|323360025|ref|YP_004226421.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Microbacterium testaceum StLB037] gi|323276396|dbj|BAJ76541.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Microbacterium testaceum StLB037] Length = 656 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 10/129 (7%) Query: 263 PRFSSNGKRALISVQK-DEAMD-----IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P SS+G A+ + + D A D ++ VDL RLT + ++ S SPD S I Sbjct: 15 PVLSSDGGFAVFATSRPDLAADRGVGQLWRVDLPDGTPRRLTRGV-VDRSPRLSPDDSTI 73 Query: 317 VF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 F +D G+ Q++V+ + G + ++++ + D WSP G +AF+ E G Sbjct: 74 AFLRADERGRAQVFVVSATGGEPVQVTE-QHGGVTDLAWSPDGARLAFSARVPEPGRYGT 132 Query: 376 MK-KDGSQE 383 ++ +D + E Sbjct: 133 VEGRDAAAE 141 >gi|315127820|ref|YP_004069823.1| TolB domain protein [Pseudoalteromonas sp. SM9913] gi|315016334|gb|ADT69672.1| TolB domain protein [Pseudoalteromonas sp. SM9913] Length = 691 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 8/118 (6%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 YS ++VF S+ G +L+ +G+ +K+++ + A+ ++PVWSP G+ IAF Sbjct: 442 YSKARKKLVFVSNESGSMELWTANQDGTSRKQLT-NLSANIYNPVWSPDGNYIAFVASHL 500 Query: 369 EKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + A+ + S + L S P+W+ +SL+ + + +Y DLNG Sbjct: 501 GEHALYLYDFNTQSSQSLPTGFSYHGKPSWAADSKSLLVANDQ------YVYRFDLNG 552 >gi|254294964|ref|YP_003060987.1| hypothetical protein Hbal_2615 [Hirschia baltica ATCC 49814] gi|254043495|gb|ACT60290.1| WD40 domain protein beta Propeller [Hirschia baltica ATCC 49814] Length = 648 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 32/157 (20%) Query: 262 APRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFIN---------ISASYSP 311 A S +GK+ A +S ++ +++ DL++ LT I + S+SP Sbjct: 135 AVSISPDGKKIAFVSTREGYFSNVWIKDLETGELTNLTGAEHIQGDPMLPNSFLRPSWSP 194 Query: 312 DSSQIVFESDRE----------GKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSP 356 D I F SDR G E +YV+ ++G + +R+ E SY P WSP Sbjct: 195 DGKWIAFSSDRNTNWRGHDYPIGWEHTQELSIYVIGADGQNFRRLVSKPEMSYGSPSWSP 254 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G I+F +AI G++ LV+D+ Q Sbjct: 255 DGKRISF-------YAITTEDTWGARRYNLVQDTTSQ 284 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 27/143 (18%) Query: 306 SASYSPDSSQIVFESDREG-------KEQLYVMQSNGSDQKRISQDK--EASYFDPVWSP 356 + S SPD +I F S REG K+ +N + + I D S+ P WSP Sbjct: 135 AVSISPDGKKIAFVSTREGYFSNVWIKDLETGELTNLTGAEHIQGDPMLPNSFLRPSWSP 194 Query: 357 QGDLIAF-----TKFSGEKFAIG----------VMKKDGSQERLLVEDSNLQ--APTWSP 399 G IAF T + G + IG V+ DG R LV + +P+WSP Sbjct: 195 DGKWIAFSSDRNTNWRGHDYPIGWEHTQELSIYVIGADGQNFRRLVSKPEMSYGSPSWSP 254 Query: 400 SGRSLIFSRKKDGDT-GSKLYSI 421 G+ + F DT G++ Y++ Sbjct: 255 DGKRISFYAITTEDTWGARRYNL 277 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 43/233 (18%) Query: 192 SLCVMDRDGANIR-------------YLTPSRDQILFEPRFSPNQQKVAYAT----YDDE 234 +L V+DRDG N R YL + ++P +S + + V + Y Sbjct: 405 NLVVLDRDGKNPRTIYEVTKESTKTPYLLGTGLVGAYQPSWSRDGEWVTFCVGTFFYKRY 464 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D +M R + + + P FS++GK + V E + + +++ + Sbjct: 465 DAPARVMMVRRDGTGLREVTHGEENAGFPSFSADGKEIVYRVWDKENIGLRIYNIEKDEH 524 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDP 352 LT T N+ A YSPD ++I+F + R G LY ++ +G+D R++ Sbjct: 525 RVLTET-GDNLPA-YSPDGTRILF-TRRHGHADYDLYTIKPDGTDLVRLTTHPSGDGH-A 580 Query: 353 VWSPQGDLIAFTKFSGEKFA-----------------IGVMKKDGSQERLLVE 388 VWS G I +SG + I VM DGS + ++ + Sbjct: 581 VWSNDGSKIM---WSGSVYGFRDEAALYDDTFQQYGQIWVMNADGSNKHMVTD 630 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 10/157 (6%) Query: 284 IYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF------ESDREGKEQLYVMQSNGS 336 IY V +S T L T + S+S D + F + ++ +++ +G+ Sbjct: 419 IYEVTKESTKTPYLLGTGLVGAYQPSWSRDGEWVTFCVGTFFYKRYDAPARVMMVRRDGT 478 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 + ++ +E + F P +S G I + + E + + + + R+L E + P Sbjct: 479 GLREVTHGEENAGF-PSFSADGKEIVYRVWDKENIGLRIYNIEKDEHRVLTETGD-NLPA 536 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 +SP G ++F+R+ G LY+I +G + + T Sbjct: 537 YSPDGTRILFTRRH-GHADYDLYTIKPDGTDLVRLTT 572 >gi|73670801|ref|YP_306816.1| hypothetical protein Mbar_A3363 [Methanosarcina barkeri str. Fusaro] gi|72397963|gb|AAZ72236.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 565 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 16/130 (12%) Query: 308 SYSPDSSQIVFESDREGKEQL--YVMQSNGSDQK----RISQDKEASYFDPVWSPQGDLI 361 S SPD +I+F S G L Y+ ++GS + E W P G L+ Sbjct: 254 SVSPDKRKIIFVSGLPGSHNLQTYISNTDGSKLRGNVSHYGDTDEHILTKEYWQPNGSLL 313 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + ++ +++ + + +RLL E N P W P G+ ++F K+ KLYSI Sbjct: 314 ----LVNQDGSLYIVEGNENNKRLLYE-GNATNPQWFPDGKKILFVTNKN-----KLYSI 363 Query: 422 DLNGRNETLI 431 +++G N T I Sbjct: 364 NVDGTNLTFI 373 >gi|218921788|emb|CAW30775.1| P46GA2.1B [Haemonchus contortus] Length = 354 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 40/245 (16%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + P+ IL+ F + A+ + D DI +V +D+ K ++P Sbjct: 76 FFYPNSVDILYSGNFHKVRSGHAWDVFPDYDIFKVNEYGNVLDQLTKNKVYDSEAFISP- 134 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-- 322 +GK+ + + ++ +D++ D+ +LTNT + AS+SPD +IVF + R Sbjct: 135 ---DGKKIVYTRKQSGDLDLWITDINGALKIQLTNTKGYDGGASFSPDGEKIVFHASRPT 191 Query: 323 ------------------EGKEQLYVMQSN-----GSDQKRI-SQDKEASYFDPVWSPQG 358 K +LYVM++N G+ ++ + ++ + A + P + P Sbjct: 192 TKDKIDIYDHLLKNDLVATNKMELYVMKANTVCGDGTGERILFNRARGALDWTPYYHPDN 251 Query: 359 DLIAFT----KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRK--- 409 I F+ ++ + ++ +DG+ ER+ A P +S G+ +++S Sbjct: 252 KRIIFSSNMNSTKSNEYHLYIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNRGS 311 Query: 410 -KDGD 413 K+GD Sbjct: 312 TKEGD 316 >gi|332300275|ref|YP_004442196.1| peptidase S41 [Porphyromonas asaccharolytica DSM 20707] gi|332177338|gb|AEE13028.1| peptidase S41 [Porphyromonas asaccharolytica DSM 20707] Length = 1095 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY VD LT + ++SPD +I F S+R+G +Y M + G D KRI+ Sbjct: 53 DIYIVDAIGGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDGHRSIYTMSALGGDVKRIT 112 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 S+ ++P G I ++ Sbjct: 113 HHSGNSHTVECYTPDGRFIIMSE 135 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 34/163 (20%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 SS+GK+ ++ D +Y ++ T+R+T + S ++SPDS +V++S R+GK Sbjct: 334 SSDGKQLAFIMRGD----VYVTSVEHGTTKRITQSAGAEESVTWSPDSKTLVYDSRRDGK 389 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFD-------------------PVWSPQGDLIAFTKF 366 LY + I+ DKE + P +SP G LIAF Sbjct: 390 HILY--------KATIASDKELDFASATIIKEEPLMPECKMEQALPQYSPDGKLIAFVGD 441 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ---APTWSPSGRSLIF 406 + V K +Q + + + WSP R + F Sbjct: 442 RKRIYTYNVESKKLTQVTSGKDQPEMHGYISYEWSPDSRWIAF 484 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G+ IAF + G+ + + + G + RLL D PTWSP G+ + F +DG Sbjct: 40 SPDGNQIAFC-YQGDIYIVDAI---GGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDG 94 >gi|313886322|ref|ZP_07820047.1| WD40-like protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924191|gb|EFR34975.1| WD40-like protein [Porphyromonas asaccharolytica PR426713P-I] Length = 1097 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY VD LT + ++SPD +I F S+R+G +Y M + G D KRI+ Sbjct: 53 DIYIVDAIGGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDGHRSIYTMSALGGDVKRIT 112 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 S+ ++P G I ++ Sbjct: 113 HHSGNSHTVECYTPDGRFIIMSE 135 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 34/164 (20%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 SS+GK+ ++ D +Y ++ T+R+T + S ++SPDS +V++S R+GK Sbjct: 334 SSDGKQLAFIMRGD----VYVTSVEHGTTKRITQSAGAEESVTWSPDSKTLVYDSRRDGK 389 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFD-------------------PVWSPQGDLIAFTKF 366 LY + I+ DKE + P +SP G LIAF Sbjct: 390 HILY--------KATIASDKELDFASATIIKEEPLMPECKMEQALPQYSPDGKLIAFVGD 441 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ---APTWSPSGRSLIFS 407 + V K +Q + + + WSP R + F Sbjct: 442 RKRIYTYNVESKKLTQVTSGKDQPEMHGYISYEWSPDSRWIAFG 485 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G+ IAF + G+ + + + G + RLL D PTWSP G+ + F +DG Sbjct: 40 SPDGNQIAFC-YQGDIYIVDAI---GGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDG 94 >gi|88706318|ref|ZP_01104024.1| secreted protein [Congregibacter litoralis KT71] gi|88699469|gb|EAQ96582.1| secreted protein [Congregibacter litoralis KT71] Length = 818 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRK 409 DP SP G+ IAF + + ++ D R L ++ + P WS GR L F R Sbjct: 56 DPAPSPDGESIAFAA----QGWLWLLDLDSGIARRLTRGGDVDSRPRWSADGRRLAFVRD 111 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 DT L +D+ G +ET+INTPA DP++ G Sbjct: 112 TGKDT--SLVVMDVAGGDETIINTPAIDLDPEFSG 144 >gi|262199346|ref|YP_003270555.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haliangium ochraceum DSM 14365] gi|262082693|gb|ACY18662.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haliangium ochraceum DSM 14365] Length = 656 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 7/181 (3%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G R + ++ VD +LT + S ++SPD + + + +DR Sbjct: 74 PALSPDGSRVAFATDTTGKPQLWVVDAAGGWPTQLTFGESVT-SHAWSPDGAWLFYGADR 132 Query: 323 EG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVMKK 378 G +E Y++ +G ++ + +A +SP G IA+ T+ +G F + V+ Sbjct: 133 GGNEREGFYLISPDGLRERELLAPSDAFRVFGGFSPDGTRIAYSTTERNGLDFDVHVLDL 192 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++R + S +W P G++L+ S + G+ G+ L+ ++L T + P A Sbjct: 193 RSGEDREVYRGSMGFFVSSWRPDGQALLLSEVR-GEDGNDLHLLELASGELTPLYQPEVA 251 Query: 438 S 438 + Sbjct: 252 A 252 >gi|224023468|ref|ZP_03641834.1| hypothetical protein BACCOPRO_00170 [Bacteroides coprophilus DSM 18228] gi|224016690|gb|EEF74702.1| hypothetical protein BACCOPRO_00170 [Bacteroides coprophilus DSM 18228] Length = 1106 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 16/137 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++I+F K +Y + ++G + +++ +E+ PVWSP G IAF+ Sbjct: 56 SPDGTEILFCY----KGDIYKVAASGGEAVQLTT-QESYEATPVWSPDGKQIAFSSDRYG 110 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KLY 419 + VM +G R L +S + P+ ++P G+ ++FS S +LY Sbjct: 111 NMDVFVMPAEGGAARRLTVNSAAETPSAFTPDGKYVVFSASIQDPAASAMFPTSAMTELY 170 Query: 420 SIDLN-GRNETLINTPA 435 + ++ G+ E ++ TPA Sbjct: 171 KVPVSGGKTEQVLGTPA 187 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +G L + D IY V +LT + +SPD QI F SDR Sbjct: 54 RISPDGTEILFCYKGD----IYKVAASGGEAVQLTTQESYEATPVWSPDGKQIAFSSDRY 109 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G ++VM + G +R++ + A ++P G + F+ Sbjct: 110 GNMDVFVMPAEGGAARRLTVNSAAET-PSAFTPDGKYVVFS 149 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 91/200 (45%), Gaps = 31/200 (15%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK+ +V+ + ++ ++ T+++T+T S+ D+ +V+ S+R G Sbjct: 348 SPDGKQVAFTVRGE----VFVTSVEYGTTKQITHTPETEEGLSFGADNRTLVYASERGGN 403 Query: 326 EQLYVMQ------SNGSDQKRISQDK-------EASYFDPVWSPQGDLIAFTKFSGEKFA 372 LY+ + +N + I ++ E +Y P +SP G +AF + ++ Sbjct: 404 WGLYLAKIGRKEDANFPNATLIEEEALLPSKTVERTY--PQFSPDGKEVAFIE---DRNR 458 Query: 373 IGVMKKDGSQERLLVEDSNLQAP------TWSPSGR--SLIF-SRKKDGDTGSKLYSIDL 423 + V+ + + R + + S + +WSP G+ +L F + D + L S D Sbjct: 459 LMVVNLETKKVRQITDGSTWYSTGGGFNYSWSPDGKWFTLEFIGNRHDPYSDVALVSADG 518 Query: 424 NGRNETLINTPAYASDPQWV 443 G L N+ +++ P+WV Sbjct: 519 KGELVNLTNSGYFSASPRWV 538 >gi|298242339|ref|ZP_06966146.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297555393|gb|EFH89257.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 682 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 45/176 (25%) Query: 310 SPDSSQIVF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD Q+ + + + +++ + G + +R +Q+ E + P WSP G +AF Sbjct: 22 SPDGKQVAYVVTRIDDKKHAYRSSIWISPTEGGEARRFTQETELTSA-PTWSPDGRWLAF 80 Query: 364 T------------------KFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSL 404 K +K I VM DG + R L + +P WSP G+ L Sbjct: 81 VAKRESSDQPSTTEKKEQKKPGKDKPQIWVMPTDGGEARQLTFMEHGASSPAWSPDGKHL 140 Query: 405 IFSRK--------KDGDTGSKLYSID-----LNG------RNETLINTPAYASDPQ 441 +FS + +DG K++ ID L+G R L P +PQ Sbjct: 141 LFSAQVGPADEETEDGKALPKVHVIDQLWYRLDGVGFIYERRAHLFLIPREGGEPQ 196 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 65/281 (23%), Positives = 101/281 (35%), Gaps = 77/281 (27%) Query: 187 GIIKNSLCVMDRDGANIRYLT------------PSRDQILFEPRFSPNQQKVAYATYDDE 234 G K + VM DG R LT P +LF + P ++ T D + Sbjct: 102 GKDKPQIWVMPTDGGEARQLTFMEHGASSPAWSPDGKHLLFSAQVGPADEE----TEDGK 157 Query: 235 DILRVYLMDT---RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + +V+++D R+D + L PR + Sbjct: 158 ALPKVHVIDQLWYRLDGVGFIYERRAHLFLIPR-------------------------EG 192 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYV--MQSNG-SDQKRIS 342 ++LT+ + + A++SPD QI F SDR + +YV +Q N + R+ Sbjct: 193 GEPQQLTDGDWNDGDAAWSPDGKQITFTSDRNEERWRIPGADIYVLALQDNKVVGEPRVL 252 Query: 343 QDKEASYFDPVWSPQGDLIAF--TKFSGEK-----FAIGVMKKDGSQERLLVE------- 388 D P WS G IAF +K G + IG + G + L E Sbjct: 253 TDGSMGCASPSWSADGQQIAFIASKKVGSAGHAYLYTIGASAEKGEPKNLTPEFEGTALD 312 Query: 389 -------DSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSI 421 D +L P WS G++L G S++Y+I Sbjct: 313 FTNSDLGDEHLMPQPAWSADGKTLYVLSSHRG--ASRIYAI 351 >gi|116626609|ref|YP_828765.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229771|gb|ABJ88480.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 879 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 46/192 (23%) Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-------------K 345 N + + S Y+P S +V+ DREG++Q+ + Q RIS D Sbjct: 556 NGMLVYYSNRYAPKSWPVVW-IDREGRQQVIPLDPGRYSQPRISPDGTRLAMTVGREGGS 614 Query: 346 EASYFD-----------------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLV 387 + +D PVW+P G + F + AI M+ DG+ E R L Sbjct: 615 DIGIYDFQRQTMTRLTFAQNNSHPVWAPDGKHLVFLTETSRLLAIRWMRADGAGETRTLF 674 Query: 388 EDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL-------NGRNETLINT------ 433 ED N P ++SP G+ KD +DL G +++T Sbjct: 675 EDKNELIPWSFSPDGQLAFTWLAKDASYHLWTLPLDLRDLDNPKTGPPAAVVHTRFTVSH 734 Query: 434 PAYASDPQWVGF 445 PA++ D +W+ + Sbjct: 735 PAFSPDGRWIAY 746 >gi|148655245|ref|YP_001275450.1| peptidase S41 [Roseiflexus sp. RS-1] gi|148567355|gb|ABQ89500.1| peptidase S41 [Roseiflexus sp. RS-1] Length = 1104 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 15/175 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ V RLT S + SPD + + F EG +++VM + G + +R++ Sbjct: 24 DLWLVAASGGVARRLTANPGSVQSPALSPDGTLLAFVGRDEGPGEVFVMLAVGGEARRLT 83 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPTWS 398 E WS G I F + F+ + + DG + RLL + ++ Sbjct: 84 FLGETMRVC-GWSRNGRDILFASSAHSPFSRSPLLYAVAADGGEPRLLPTGPAVHV-SYG 141 Query: 399 PSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P G +I + R + G TG D +G LI+ P + P WVG Sbjct: 142 PDGGMVIGRNESDPARWKRYRGGRTGDVWIDPDGSGEWRRLISLPGNIAIPLWVG 196 >gi|116625466|ref|YP_827622.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228628|gb|ABJ87337.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 905 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 15/167 (8%) Query: 250 PKRIGNFRSMILAPRFSSNGK-RALISVQKDEA-MDIYSVDLQSNATERLTNTLFINISA 307 P+R+ + + P S++GK A S + E +DI+ + RLT Sbjct: 341 PERLTLDLGLNIDPAISADGKFVAYASDRSGEGNLDIWVKQIGGGEPIRLTRNPADEREP 400 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + + + S R+G V G +Q+ IS+ + P +SP G IA+ K Sbjct: 401 AFSPDGTSVAYRSVRDGGGIYVVSMLGGEEQRLISEGRR-----PRFSPDGKQIAYWKGL 455 Query: 368 GEKFAIG-------VMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIF 406 E F + + + SQ R + E + P WSP G+ ++F Sbjct: 456 EEPFPVRAGSGTAYIFDRTTSQTRQIAPEFAAAVHPVWSPDGKHILF 502 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 31/206 (15%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 EP FSP+ VAY + D +Y++ + I R PRFS +GK+ Sbjct: 399 EPAFSPDGTSVAYRSVRDGG--GIYVVSMLGGEEQRLISEGRR----PRFSPDGKQIAYW 452 Query: 276 VQKDEAMDI-------YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 +E + Y D ++ T ++ + +SPD I+F +E + L Sbjct: 453 KGLEEPFPVRAGSGTAYIFDRTTSQTRQIAPEFAAAVHPVWSPDGKHILFLGIKEDTKTL 512 Query: 329 --YVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + G R + S DP W +GD I + +G A K G Q+ Sbjct: 513 DWWFVPAAGGTAVRCHVNVSGSLVDPFEW--RGDFIYYETGAGTADA-----KIGKQQ-- 563 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKD 411 + TW P G+ + + + D Sbjct: 564 ------IDPATWQPVGKPVRLTTRAD 583 >gi|260911011|ref|ZP_05917647.1| tricorn family protease MdsD [Prevotella sp. oral taxon 472 str. F0295] gi|260634815|gb|EEX52869.1| tricorn family protease MdsD [Prevotella sp. oral taxon 472 str. F0295] Length = 1077 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIYSV +LT + +SPDS Q+ F S+REG +YVMQ G +RI+ Sbjct: 45 DIYSVPATGGTARQLTTNAAHDTHPVWSPDSKQLAFCSNREGSMDIYVMQREGGTPRRIT 104 Query: 343 QD 344 + Sbjct: 105 TN 106 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 23/147 (15%) Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N L++ A SPD S + F K +Y + + G ++++ + A PVWSP Sbjct: 22 NPLWMRHCA-ISPDGSTVAFTY----KGDIYSVPATGGTARQLTTNA-AHDTHPVWSPDS 75 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-------------TWSPSGRSLI 405 +AF I VM+++G R + +S + P + P+ +S+I Sbjct: 76 KQLAFCSNREGSMDIYVMQREGGTPRRITTNSGNETPIAFKDNNTVLYTTSIMPTAQSII 135 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLIN 432 F+ + ++Y + NG L + Sbjct: 136 FANR----MLPQVYEVGTNGSRPHLFS 158 >gi|223038622|ref|ZP_03608915.1| protein TolB [Campylobacter rectus RM3267] gi|222880024|gb|EEF15112.1| protein TolB [Campylobacter rectus RM3267] Length = 424 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/250 (21%), Positives = 108/250 (43%), Gaps = 20/250 (8%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SE V++ V+ R G NI F +Q+ Y+ Y ++ +Y Sbjct: 172 SEIVIADYTLTYQKVLVRGGLNI-----------FPKWIGADQRAFYYSDYSGAKLV-LY 219 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 D + K + + M++A S NG + L+++ + DIY DL S ++TN Sbjct: 220 RYDVASGQKTKILDSRGGMLIASDVSQNGDKILLTMAPQDQPDIYIYDLNSKRLSQITNY 279 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-----SQDKEASYFDP-VW 354 I+++ ++ ++VF SDR G ++ +GS +++ + + ++Y + V+ Sbjct: 280 SGIDVNGNFVDGDRRVVFVSDRLGYPNVFAQNVDGSGFEQMVYHGKNNNSVSTYQNYIVY 339 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 S + D + F F I ++ R L P +S G+S++F ++ G + Sbjct: 340 SSRED--GKSGFGTRDFNIYMISTQTDYIRQLTASGKNLYPRFSSDGQSVVFIKELGGQS 397 Query: 415 GSKLYSIDLN 424 + ++ N Sbjct: 398 SLGIIRVNEN 407 >gi|218265119|ref|ZP_03478701.1| hypothetical protein PRABACTJOHN_04411 [Parabacteroides johnsonii DSM 18315] gi|218221574|gb|EEC94224.1| hypothetical protein PRABACTJOHN_04411 [Parabacteroides johnsonii DSM 18315] Length = 1079 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 25/162 (15%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYKVPATGGEAGRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTK-----F 366 +G ++Y M G + R+ S+D P W+P G I + F Sbjct: 85 DGNTEVYTMPVTGGEPLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGSRIVYRNRISDGF 144 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 SG+ F V K+ G E + + + ++SP G+ L ++R Sbjct: 145 SGKLFT--VEKEGGLSEVIPLPEGGFC--SYSPDGKQLAYNR 182 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 77/160 (48%), Gaps = 15/160 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFESDRE 323 S +G+R +++ + + ++++ ++ T+ +T + + A +SPD IV+ SD Sbjct: 322 LSPDGERLVVTARGE----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGKFIVYISDAT 377 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G+ +LY+ + G + ++++D + SP + +T K + ++ Q Sbjct: 378 GETELYMQDATGGEPVQLTKDNDTYIRSFELSPDSKTLVYTD---RKNRVNLLDIATKQV 434 Query: 384 RLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 L++D + T+SP + L ++R TG+ YSI Sbjct: 435 TTLLQDPMGEPRGVTFSPDSKWLTYTR-----TGNNEYSI 469 >gi|156741360|ref|YP_001431489.1| peptidase S9 prolyl oligopeptidase [Roseiflexus castenholzii DSM 13941] gi|156232688|gb|ABU57471.1| peptidase S9 prolyl oligopeptidase active site domain protein [Roseiflexus castenholzii DSM 13941] Length = 708 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Query: 351 DPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 +P SP G IAF + + + AI + DG R L +N AP WSP GR L Sbjct: 32 EPQVSPDGREIAFVRVTIDRSANANRRAIWIAPTDGGPPRRLTSGTNDSAPRWSPDGRWL 91 Query: 405 IFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQW 442 F + GD +LY + + G L + P SDP W Sbjct: 92 AFVSVR-GDDRPQLYVLRRDGGEARRLTSLPQGVSDPAW 129 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 22/232 (9%) Query: 214 LFEPRFSPNQQKVAYA--TYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 L EP+ SP+ +++A+ T D + R + D P R + APR+S +G+ Sbjct: 30 LEEPQVSPDGREIAFVRVTIDRSANANRRAIWIAPTDGGPPRRLTSGTNDSAPRWSPDGR 89 Query: 271 R-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 A +SV+ D+ +Y + RLT+ ++SPD +I F S E+ Sbjct: 90 WLAFVSVRGDDRPQLYVLRRDGGEARRLTSLPQGVSDPAWSPDGRRIAFLSRLNAAERAS 149 Query: 330 VMQSNGSDQK----------RISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGV 375 S + + +E FDP + A +F S + + I V Sbjct: 150 EDASEPEPEPADEFMHKQLVERRKHEEQRRFDPRVVRRLPYRAGVEFFDDRSTQMYIIEV 209 Query: 376 MKKD---GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 D Q R + + D + AP W P G+S++ + +D + S+ + D+ Sbjct: 210 PDDDDAPAPQPRRITDADLDFGAPVWMPDGQSVLTTATRDPEADSQFFFFDV 261 >gi|312129903|ref|YP_003997243.1| wd40-like beta propeller containing protein [Leadbetterella byssophila DSM 17132] gi|311906449|gb|ADQ16890.1| WD40-like beta Propeller containing protein [Leadbetterella byssophila DSM 17132] Length = 1024 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/180 (19%), Positives = 79/180 (43%), Gaps = 12/180 (6%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNT--- 300 R+ +P + + ++P S +GK A +S + +M++Y D ++ + NT Sbjct: 276 RVKTSPHELLASGDINISPALSPDGKYLAYVSSKDVLSMNVYIADTKTKKVIKKINTDGF 335 Query: 301 -------LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 FI + ++SPD+ ++ + K +L ++ + D++ + ++ P Sbjct: 336 GQHVDSYSFIESTLTWSPDNKKVALVIQSKSKNKLLILDAFQGDKREYALPDLDAFTHPA 395 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 WSP ++IA + + + + + G E + + + P W+P G + F + G Sbjct: 396 WSPHEEIIALSGMKNGQVDLYLYHLRSGKLEAVTSDRYSDVQPAWAPDGEHIYFVTDRGG 455 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S + + +S K+ +D+Y L+S E +T+ + ++ +++PD I F +DR Sbjct: 394 PAWSPHEEIIALSGMKNGQVDLYLYHLRSGKLEAVTSDRYSDVQPAWAPDGEHIYFVTDR 453 Query: 323 EG-----KEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGDLIAF 363 G KE+L + + N + + + E ++P SP G ++ F Sbjct: 454 GGSERLEKEKLKIAKINLKTKAIEILPLFSEVDLYNPQVSPDGKIVYF 501 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 20/215 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMD---------TRIDRAPKRIGNFRSMILAPRFSS 267 P SP+ + +AY + D + VY+ D D + + ++ + +S Sbjct: 294 PALSPDGKYLAYVSSKDVLSMNVYIADTKTKKVIKKINTDGFGQHVDSYSFIESTLTWSP 353 Query: 268 NGKRALISVQKDEAMDIYSVD-LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + K+ + +Q + +D Q + E L ++SP I + G+ Sbjct: 354 DNKKVALVIQSKSKNKLLILDAFQGDKREYALPDLDAFTHPAWSPHEEIIALSGMKNGQV 413 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGV--MK 377 LY+ + ++ D+ + P W+P G+ I F + EK I +K Sbjct: 414 DLYLYHLRSGKLEAVTSDRYSD-VQPAWAPDGEHIYFVTDRGGSERLEKEKLKIAKINLK 472 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + L + +L P SP G+ + F DG Sbjct: 473 TKAIEILPLFSEVDLYNPQVSPDGKIVYFLASPDG 507 >gi|88801496|ref|ZP_01117024.1| putative protease [Polaribacter irgensii 23-P] gi|88782154|gb|EAR13331.1| putative protease [Polaribacter irgensii 23-P] Length = 1079 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 23/147 (15%) Query: 279 DEAMDIYSVDLQSNATERL----------TNTLFINIS-----ASYSPDSSQIVFESDRE 323 ++A ++++DL++N T+RL T + N++ AS SP+ ++V S Sbjct: 267 EQAGYLHTLDLKTNNTKRLKINITGDFPWTAIKWENVNDRITYASISPNGKRVVMSS--- 323 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-FTKFSGEKFAIGVMKKDGSQ 382 + ++ D + I+ +A+ +WSP+GD IA F+ G+ +A+ + +DG+ Sbjct: 324 -RGDIFTNPIEFGDSRNITHSSDAADRAAIWSPKGDKIAWFSDADGKGYALHLTNQDGTA 382 Query: 383 ERLLVE---DSNLQAPTWSPSGRSLIF 406 + ++ P WSP G+ + F Sbjct: 383 KTEIISIGISKMAWEPNWSPDGKYISF 409 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 18/132 (13%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYL---MDTRIDRAPKRIGNFRSMILAPRFSSN 268 ++L EP NQ AYA DI L + TR+ + N P+ S N Sbjct: 26 RLLREPTIHGNQIAFAYAG----DIWTTNLASNLTTRLTSTSAKESN-------PQISPN 74 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 GK S K + +Y V + +RLT NI+ ++ D ++F S+R Sbjct: 75 GKWITFSSNKSGILSVYIVAITGGEAKRLTWHTSENIARGWTNDGENVLFASNRNTAPSN 134 Query: 326 -EQLYVMQSNGS 336 +LY + +NG Sbjct: 135 FNRLYTIPANGG 146 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DI++ +L SN T RLT+T + SP+ I F S++ G +Y++ G + KR Sbjct: 43 AGDIWTTNLASNLTTRLTSTSAKESNPQISPNGKWITFSSNKSGILSVYIVAITGGEAKR 102 Query: 341 IS 342 ++ Sbjct: 103 LT 104 >gi|271967011|ref|YP_003341207.1| peptidase S9 prolyl oligopeptidase [Streptosporangium roseum DSM 43021] gi|270510186|gb|ACZ88464.1| peptidase S9 prolyl oligopeptidase [Streptosporangium roseum DSM 43021] Length = 642 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 34/168 (20%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD + F +G+ Q++++ +G + R+ VWSP G IA+ G Sbjct: 68 WSPDGHSLAFLRPVDGRAQIHLLPMDGG-EPRVLTAAPLGAGAAVWSPDGTGIAYGAPHG 126 Query: 369 EKF---------------AIGVMK-----------KDGSQERLLVEDSNLQAPTWSPSGR 402 + +G+++ G ++ D + P+WSP GR Sbjct: 127 DPDPHAPVVADRLEYKADGVGLLRGLTTHLSVVDVATGQTRQITSGDFHAGEPSWSPDGR 186 Query: 403 SLIFSRKKDGD-----TGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 L F+ + D TG+ +YS+D+ G E L +D W+G Sbjct: 187 KLAFAASMEPDRDLAVTGA-VYSVDVSGGEPELLTGAGVICTDAWWLG 233 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%) Query: 312 DSSQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 D + +V +DRE E +++ + + G++ +R++ S P WSP G +AF + Sbjct: 26 DVAYVVATTDRESDENRSEIW-LAAPGAEPRRLTGGPRDSA--PRWSPDGHSLAFLRPVD 82 Query: 369 EKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFS 407 + I ++ DG + R+L A WSP G + + Sbjct: 83 GRAQIHLLPMDGGEPRVLTAAPLGAGAAVWSPDGTGIAYG 122 >gi|150003761|ref|YP_001298505.1| putative peptidase/protease family protein [Bacteroides vulgatus ATCC 8482] gi|149932185|gb|ABR38883.1| putative peptidase/protease family protein [Bacteroides vulgatus ATCC 8482] Length = 1084 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + +NG +++ +ASY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPANGGTATQLTT--QASYECSPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID----- 422 F + VM DG R L S + P T++ G ++FS S L+ Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 423 -----LNGRNETLINTPA 435 GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT S +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPANGGTATQLTTQASYECSPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|254881010|ref|ZP_05253720.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640017|ref|ZP_07994744.1| peptidase/protease [Bacteroides sp. 3_1_40A] gi|254833803|gb|EET14112.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388295|gb|EFV69147.1| peptidase/protease [Bacteroides sp. 3_1_40A] Length = 1084 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + +NG +++ +ASY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPANGGTATQLTT--QASYECSPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID----- 422 F + VM DG R L S + P T++ G ++FS S L+ Sbjct: 85 GNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTEL 144 Query: 423 -----LNGRNETLINTPA 435 GR E ++ TPA Sbjct: 145 YKVPVTGGRTEQVLGTPA 162 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT S +SPDS QI F SDR G L+VM ++G +R++ Sbjct: 44 DIYKVPANGGTATQLTTQASYECSPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++ G+ I F+ Sbjct: 104 T-HSASEIPSTFTTDGNYILFS 124 >gi|320106816|ref|YP_004182406.1| hypothetical protein AciPR4_1592 [Terriglobus saanensis SP1PR4] gi|319925337|gb|ADV82412.1| hypothetical protein AciPR4_1592 [Terriglobus saanensis SP1PR4] Length = 650 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 4/106 (3%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +AS+SP+SS++ ++++++ S G +++++ +PV+SP G I FT Sbjct: 252 TASWSPNSSKLAVILQESAWDKIWLISSKGGKPQQLTKGTGEDE-NPVYSPDGKWIVFTS 310 Query: 366 ---FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 + E+ + G+ RL N AP WSP G + FSR Sbjct: 311 NRDLAEERHLWLIPSSGGAPRRLTHLSGNESAPQWSPDGTKIYFSR 356 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 14/170 (8%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDE---DILRVYLMDTRIDRAPKRIGNFRS------- 258 S D+ P +SP+ +++Y + L+V + D A I + + Sbjct: 188 SSDRFDPNPSWSPDGTRISYTERSRQFFSGKLKVLVFDQATGTAGASIDLYTAKNDPGGA 247 Query: 259 -MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + +S N + + +Q+ I+ + + ++LT + + YSPD IV Sbjct: 248 WAVNTASWSPNSSKLAVILQESAWDKIWLISSKGGKPQQLTKGTGEDENPVYSPDGKWIV 307 Query: 318 FESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 F S+R+ E+ L+++ S+G +R++ + P WSP G I F++ Sbjct: 308 FTSNRDLAEERHLWLIPSSGGAPRRLTH-LSGNESAPQWSPDGTKIYFSR 356 >gi|307331447|ref|ZP_07610564.1| amidohydrolase [Streptomyces violaceusniger Tu 4113] gi|306882890|gb|EFN13959.1| amidohydrolase [Streptomyces violaceusniger Tu 4113] Length = 1099 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWS 355 L+ T N +A+ SP +++ E + L+ + G + ++ D E + PV+S Sbjct: 54 LSFTAATNGAATLSPSGDRMIAEV----QNVLWSVARKGGEAVPLTPADLEPTR--PVYS 107 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGD 413 P G L+A + G F I ++ DGS R + + + P WSP G + F+ ++ GD Sbjct: 108 PDGKLLAVCAYRGGGFHIWTLRPDGSGLRQRTDGPWDDRGPAWSPDGTRIAFASERGGD 166 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 15/118 (12%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +GK + + I+++ + + T+ + + ++SPD ++I F S+R Sbjct: 104 PVYSPDGKLLAVCAYRGGGFHIWTLRPDGSGLRQRTDGPWDDRGPAWSPDGTRIAFASER 163 Query: 323 EGKE------QLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTK 365 G +++V++ + R++ QD FDP WS G+ + F + Sbjct: 164 GGDPVAGSPYRIWVLEVATGELTRLTGADGQDGPLQDGAWEDFDPTWSADGERVLFVR 221 >gi|52841869|ref|YP_095668.1| acylaminoacyl peptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628980|gb|AAU27721.1| acylaminoacyl peptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 659 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 127/314 (40%), Gaps = 67/314 (21%) Query: 178 LFVSESVVSGIIKNSLC-VMDRDGANIRYLTPSRD----QILFEPRFSPNQQKVAYATYD 232 + V + V G+I +C V+ DG + L D Q + EP SP+ + VAY Sbjct: 1 MIVMKGVCLGLI---ICLVVFHDGWAGKRLPELDDLYRIQDISEPDLSPDGKWVAYTVSQ 57 Query: 233 ---DEDILRVYLMDTRIDRAPKRIGNFR--SMILAPRFSSNGK--RALISVQKDEAMDIY 285 ++I + +D + F S P++S NGK L K+ I+ Sbjct: 58 LNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIW 117 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----------------------- 322 +Q N +LT+ ++SPDS++I F + + Sbjct: 118 IASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSVPSNEEEQPIVVDRYQFKVDGV 177 Query: 323 ----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFA 372 +G++ LY+++ +++ Y P WSP G IAF G+ + Sbjct: 178 GYLGKGRDHLYLVELKSKAITQLTDGNHDEYL-PAWSPDGKYIAFVTKRGKDPDRHFNYD 236 Query: 373 IGVMK-KDGSQERLLVE----------DSNLQAPTWSPSGRSLIFSRKKDGD----TGSK 417 I +++ K G++ER L DSNL +WSP + + R + + ++ Sbjct: 237 IYLIEPKSGAKERQLTHFSGSDMNPDYDSNL---SWSPDSSKIAYLRSNEHQWTYYSPNQ 293 Query: 418 LYSIDLNGRNETLI 431 L ID+N ++E +I Sbjct: 294 LAIIDINTKDEKII 307 >gi|75908402|ref|YP_322698.1| peptidase C14 [Anabaena variabilis ATCC 29413] gi|75702127|gb|ABA21803.1| Peptidase C14, caspase catalytic subunit p20 [Anabaena variabilis ATCC 29413] Length = 1557 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 37/270 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS----------SPASWRKIAHTISDD-- 161 GR++ D RLWDV Q IG+ F SP R ++ + + Sbjct: 1079 GRIVSGSNDNT---IRLWDVN--GQPIGQPFRGHEGGVNSVAFSPDGGRIVSGSYDNTVR 1133 Query: 162 --------IYQSITGEKGDFNSRILFVSES--VVSGIIKNSLCVMDRDGANIRYLTPSRD 211 I Q G +G NS + F + +VSG N++ + D +G I + Sbjct: 1134 LWDVNGQPIGQPFRGHEGGVNS-VAFSPDGGRIVSGSNDNTIRLWDMNGQPIGQPFRGHE 1192 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +++ FSP+ ++ +YD +R++ M+ + P R M+L+ FS +G R Sbjct: 1193 DMVYSVAFSPDGGRIVSGSYD--KTIRLWDMNGQPIGQPFR--GHEDMVLSVAFSPDGGR 1248 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++S D + ++ + QS + +N S ++SPD +IV S+ + + Sbjct: 1249 -IVSGSYDNTVRLWEANGQSIGQPFRGHENLVN-SVAFSPDGGRIVSGSN---DNTIRLW 1303 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 NG + + E + +SP G I Sbjct: 1304 DVNGQPIGQPFRGHEGRVYSVAFSPDGGRI 1333 >gi|302882872|ref|XP_003040341.1| hypothetical protein NECHADRAFT_34811 [Nectria haematococca mpVI 77-13-4] gi|256721219|gb|EEU34628.1| hypothetical protein NECHADRAFT_34811 [Nectria haematococca mpVI 77-13-4] Length = 629 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFSPNQQKVAYATY---- 231 I +++ SG + L V + DG++ + L + F +SP + + +++ Sbjct: 12 IFYLNRIAPSGSL---LYVANADGSDAKPLMNNGSAAFDFHASWSPGGKWIVFSSERRAD 68 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 DI RV + ++ + + +L+P ++ A +S Q + +I+ DL++ Sbjct: 69 GQSDIYRVKPNGSELETLVQTDSFEDAGVLSPDGTT---LAYVSTQGNYTANIWVKDLRT 125 Query: 292 NATERLTNTLFI---------NISASYSPDSSQIVFESDRE----------GKEQ----- 327 + LTNT + ++SPD I F SDR G E Sbjct: 126 GIAKNLTNTASTRGDRSSPQGHFRPAWSPDGEWIAFSSDRNTEWTGHSDGTGWEHTQTLS 185 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +Y+++ NGSD + ++ + P WSP G I ++ S E Sbjct: 186 IYIIRPNGSDFRAVASKPGYALGSPQWSPDGSRILYSSISTE 227 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 28/178 (15%) Query: 265 FSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +S GK + S ++ D DIY V + E L T + SPD + + + S + Sbjct: 52 WSPGGKWIVFSSERRADGQSDIYRVKPNGSELETLVQTDSFEDAGVLSPDGTTLAYVSTQ 111 Query: 323 EG-------KEQLYVMQSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAF-----TKFSG 368 K+ + N ++ D+ + +F P WSP G+ IAF T+++G Sbjct: 112 GNYTANIWVKDLRTGIAKNLTNTASTRGDRSSPQGHFRPAWSPDGEWIAFSSDRNTEWTG 171 Query: 369 ----------EKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDT 414 + +I +++ +GS R + L +P WSP G +++S DT Sbjct: 172 HSDGTGWEHTQTLSIYIIRPNGSDFRAVASKPGYALGSPQWSPDGSRILYSSISTEDT 229 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 35/209 (16%) Query: 267 SNGKRALISVQK--DEAMDIYSVDLQSNATERLTN--TLFINISASYSPDSSQIVFESDR 322 S+GKR + + + +Y + + + L N + + AS+SP IVF S+R Sbjct: 6 SDGKRGIFYLNRIAPSGSLLYVANADGSDAKPLMNNGSAAFDFHASWSPGGKWIVFSSER 65 Query: 323 --EGKEQLYVMQSNGSDQKRISQDKEASYFDP-VWSPQGDLIAFTKFSGEKFA------- 372 +G+ +Y ++ NGS+ + + Q S+ D V SP G +A+ G A Sbjct: 66 RADGQSDIYRVKPNGSELETLVQTD--SFEDAGVLSPDGTTLAYVSTQGNYTANIWVKDL 123 Query: 373 -IGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGD-TGS----------- 416 G+ K + + S+ Q P WSP G + FS ++ + TG Sbjct: 124 RTGIAKNLTNTASTRGDRSSPQGHFRPAWSPDGEWIAFSSDRNTEWTGHSDGTGWEHTQT 183 Query: 417 -KLYSIDLNGRN-ETLINTPAYA-SDPQW 442 +Y I NG + + + P YA PQW Sbjct: 184 LSIYIIRPNGSDFRAVASKPGYALGSPQW 212 >gi|301310105|ref|ZP_07216044.1| MdsD protein [Bacteroides sp. 20_3] gi|300831679|gb|EFK62310.1| MdsD protein [Bacteroides sp. 20_3] Length = 1080 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ +ASY P+WSP G IAF Sbjct: 30 SPDGTEIAFCY----KGDIYKVPAKGGTATQLT--TQASYECTPIWSPDGKQIAFASDRN 83 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L S + P+ ++P G+ ++FS S +L Sbjct: 84 GNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTEL 143 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 144 YKVPIGGGRTEQVLGTPA 161 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G L+VM SNG + ++ Sbjct: 43 DIYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGNFDLFVMPSNGGTAQCLT 102 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 103 T-HSASEIPSAFTPDGKYVLFS 123 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 34/201 (16%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK+ ++++ + ++ N T+++TNT +SPD+ + + S+R G Sbjct: 322 SPDGKQIALTLRGE----VFVTSADYNTTKQITNTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 326 EQLYVMQSNGSDQKRI-------------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 QLY+ + ++ S+ E +Y P +SP G +AF + ++ Sbjct: 378 WQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNY--PQFSPDGKELAFIE---DRMR 432 Query: 373 IGVMKKDGSQERLLVEDSNLQAP------TWSPSGRSLIFSRKKDGDTGSKLYSIDL--- 423 + V+ + + R + + S + +WSP G+ F+ + G+ I L Sbjct: 433 LMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGK--WFTLRFIGNKHDPYSDIGLVSA 490 Query: 424 -NGRNETLINTPAYASDPQWV 443 G L N+ ++ PQWV Sbjct: 491 QGGEITNLTNSGYTSTSPQWV 511 >gi|194367095|ref|YP_002029705.1| transcriptional regulator domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194349899|gb|ACF53022.1| transcriptional regulator domain protein [Stenotrophomonas maltophilia R551-3] Length = 774 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 10/154 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 APR+S +GK L+ V+ + D++ + A E+LTN ++ D IVF Sbjct: 368 APRYSPDGK-WLVFVRNPQMGDLWRMPAGGGALEQLTNESAEQRGWAWLGDGRSIVFGRR 426 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVW---SPQGDLIAFTKFSGEKFAIGVMKK 378 + + +LY + ++R +D A D W S GD++AF + + Sbjct: 427 VDSEVRLYYLDV----ERRTLRD--AGLDDAQWPTVSRHGDVLAFVHRRAQFGVFRMPMA 480 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 G ERL P +P GR L+F+ + G Sbjct: 481 GGGAERLFASSGRDGQPMAAPDGRQLVFTSDRSG 514 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 297 LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRIS-QDKEASYFDP 352 +T T + SPD SQ+ +E D G + V S + ++++ K AS P Sbjct: 215 ITATSGFETYPTLSPDGSQVAYEGANEDGAGGGAIKVQTSGNAPARQLALPPKGASDRFP 274 Query: 353 VWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 WSP G IAF +FS G + I ++ + + L + W+P GR L+F Sbjct: 275 SWSPDGREIAFARFSADGGCQVLIASATGGVVRQATRCDGTELLSFDWTPDGRGLVFG 332 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 305 ISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDL 360 +S ++PD +VF S R + V+ + ++ + + FD P +SP G Sbjct: 318 LSFDWTPDGRGLVFGSMVGRYAHRGIRVLDLASGQWRALAYEVDQDDFDYAPRYSPDGKW 377 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + F + + G+ E+L E + + W GRS++F R+ D + +LY Sbjct: 378 LVFVRNPQMGDLWRMPAGGGALEQLTNESAEQRGWAWLGDGRSIVFGRRVDSEV--RLYY 435 Query: 421 IDLNGRNETLINTPAYASDPQW 442 +D+ R TL + A D QW Sbjct: 436 LDVERR--TLRD--AGLDDAQW 453 >gi|262381631|ref|ZP_06074769.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296808|gb|EEY84738.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1080 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ +ASY P+WSP G IAF Sbjct: 30 SPDGTEIAFCY----KGDIYKVPAKGGTATQLT--TQASYECTPIWSPDGKQIAFASDRN 83 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L S + P+ ++P G+ ++FS S +L Sbjct: 84 GNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTEL 143 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 144 YKVPIGGGRTEQVLGTPA 161 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G L+VM SNG + ++ Sbjct: 43 DIYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGNFDLFVMPSNGGTAQCLT 102 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 103 T-HSASEIPSAFTPDGKYVLFS 123 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 32/200 (16%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK+ ++++ + ++ N T+++TNT +SPD+ + + S+R G Sbjct: 322 SPDGKQIALTLRGE----VFVTSADYNTTKQITNTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 326 EQLYVMQSNGSDQKRI-------------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 QLY+ + ++ S+ E +Y P +SP G +AF + ++ Sbjct: 378 WQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNY--PQFSPDGKELAFIE---DRMR 432 Query: 373 IGVMKKDGSQERLLVEDSNLQAP------TWSPSGR--SLIFSRKKDGDTGSKLYSIDLN 424 + V+ + + R + + S + +WSP G+ +L F K D S + + Sbjct: 433 LMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFIGNKH-DPYSDIGLVSAQ 491 Query: 425 GRNETLINTPAYAS-DPQWV 443 G T + Y S PQWV Sbjct: 492 GGEITNLTNSGYTSISPQWV 511 >gi|225011742|ref|ZP_03702180.1| WD40 domain protein beta Propeller [Flavobacteria bacterium MS024-2A] gi|225004245|gb|EEG42217.1| WD40 domain protein beta Propeller [Flavobacteria bacterium MS024-2A] Length = 304 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK + +++ D+Y +++ RLT+T ++ YSPD I F S R + Sbjct: 143 SPDGKDIVYCAERNGNYDVYKMNVDGGEEIRLTSTEGLDDGPEYSPDGMYIYFNSFRTKQ 202 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSP---QGDLIAFTKFSGEKFAIG--VMKKDG 380 Q++ M+ +G+ ++++ D +++F + +P Q LI++ + +K G V + Sbjct: 203 MQIWRMKPDGTQAEQMTFDNYSNWFAHI-APNNSQAVLISYIENQEDKHPFGRAVKLRLI 261 Query: 381 SQERLLVED---------SNLQAPTWSPSGRSLIFSR 408 E ++D + P+WSP G + R Sbjct: 262 DLETKKIKDLTDVFYGGQGTINVPSWSPDGLEFAYVR 298 >gi|254881047|ref|ZP_05253757.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640054|ref|ZP_07994781.1| exported protease [Bacteroides sp. 3_1_40A] gi|254833840|gb|EET14149.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388332|gb|EFV69184.1| exported protease [Bacteroides sp. 3_1_40A] Length = 1074 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 I------SQDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 + S+D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMSEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R ++ + + ++ V + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLAVTARGE----VFDVPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|268317952|ref|YP_003291671.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335486|gb|ACY49283.1| peptidase S9B dipeptidylpeptidase IV domain protein [Rhodothermus marinus DSM 4252] Length = 1078 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 14/156 (8%) Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPV---- 353 N + N S + SP +I F + R G +Y+ +N G +R+ + + F+ + Sbjct: 292 NAGYYNTSPALSPQGDRIAFITTRNGLFDVYLASANDGKILRRLVAGQTSPDFESLRILT 351 Query: 354 ----WSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVED-SNLQAPTWSPSGRSLIFS 407 WSP G +A SG AI V+ + G+ R + D + + WSP GR + F+ Sbjct: 352 PGLTWSPDGRFLALAVKSGPTDAIAVINVETGAHVRYRIPDVEQILSLAWSPDGRRIAFA 411 Query: 408 RKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQW 442 + S +Y +DL G N +P W Sbjct: 412 GTQRAQ--SDIYVLDLRTGETINYTNDAFSDHEPAW 445 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 IL+ +S +G+R + + DIY +DL++ T TN F + ++ PD +VF Sbjct: 396 ILSLAWSPDGRRIAFAGTQRAQSDIYVLDLRTGETINYTNDAFSDHEPAWRPDGRALVFH 455 Query: 320 SDR 322 SDR Sbjct: 456 SDR 458 >gi|317486270|ref|ZP_07945102.1| tol-Pal system beta propeller repeat protein TolB [Bilophila wadsworthia 3_1_6] gi|316922440|gb|EFV43694.1| tol-Pal system beta propeller repeat protein TolB [Bilophila wadsworthia 3_1_6] Length = 440 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 72/358 (20%), Positives = 140/358 (39%), Gaps = 69/358 (19%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTI 158 F+ + GA +LVT + K VE R+++ + + G + + + +A Sbjct: 100 FKRFQLAGADLLVTAGWPQGDKSGSTVELRVYETFSGQFVFGNAYSGVTKEEVQDVADRF 159 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 D+ +++TG F + + FV S G K + + G N+R +T I P Sbjct: 160 CADLMKALTGHGDFFLATLAFVKNS---GKNKRDVWITKPTGRNLRKIT-DIPGIAMSPS 215 Query: 219 FSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFR---SMILAPRFSSNGKRALI 274 +S + + + ++ DD+ L V+ DR R+ R + ++ P F+ G + + Sbjct: 216 WSLDGRFIVFSHMDDKSHALGVW------DRLTNRVQRIRFPGNTVIGPTFTP-GNKVAV 268 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 S+ + DI+ ++ L IN+S ++ +++ F S+R G Q+++ Sbjct: 269 SLSTGKNPDIFMLNHAFQKERTLEANGTINVSPTFDAAGTKMAFTSNRMGGPQIFMK--- 325 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 DL + GS R+ + + Sbjct: 326 ------------------------DLAS-----------------GSVSRVTKQGNYNTE 344 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 P+ SP G + FSR G++++ DL E I+ P++A D ++ F Sbjct: 345 PSMSPDGTLIAFSRLT--SEGNRIFVQDLTTGTEQQISFGPGNDVLPSFAPDSYFIAF 400 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 7/145 (4%) Query: 213 ILFEPRFSPNQQKVAYAT--YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 I P F K+A+ + I L + R K+ GN+ + P S +G Sbjct: 297 INVSPTFDAAGTKMAFTSNRMGGPQIFMKDLASGSVSRVTKQ-GNYNT---EPSMSPDGT 352 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 S E I+ DL + ++++ ++ S++PDS I F S+R G Q+Y+ Sbjct: 353 LIAFSRLTSEGNRIFVQDLTTGTEQQISFGPGNDVLPSFAPDSYFIAFTSNRSGPNQIYL 412 Query: 331 MQSNGSDQKRISQDKEASYFDPVWS 355 +G D K++ + F P W Sbjct: 413 TTRHGGDAKKVPTGSGDASF-PRWG 436 >gi|298376771|ref|ZP_06986726.1| MdsD protein [Bacteroides sp. 3_1_19] gi|298266649|gb|EFI08307.1| MdsD protein [Bacteroides sp. 3_1_19] Length = 1080 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ +ASY P+WSP G IAF Sbjct: 30 SPDGTEIAFCY----KGDIYKVPAKGGTATQLT--TQASYECTPIWSPDGKQIAFASDRN 83 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L S + P+ ++P G+ ++FS S +L Sbjct: 84 GNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTEL 143 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 144 YKVPIGGGRTEQVLGTPA 161 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G L+VM SNG + ++ Sbjct: 43 DIYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGNFDLFVMPSNGGTAQCLT 102 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 103 T-HSASEIPSAFTPDGKYVLFS 123 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 34/201 (16%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK+ ++++ + ++ N T+++TNT +SPD+ + + S+R G Sbjct: 322 SPDGKQIALTLRGE----VFVTSADYNTTKQITNTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 326 EQLYVMQSNGSDQKRI-------------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 QLY+ + ++ S+ E +Y P +SP +AF + ++ Sbjct: 378 WQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNY--PQFSPDAKELAFIE---DRMR 432 Query: 373 IGVMKKDGSQERLLVEDSNLQAP------TWSPSGRSLIFSRKKDGDTGSKLYSIDL--- 423 + V+ + + R + + S + +WSP G+ F+ + G+ I L Sbjct: 433 LMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGK--WFTLRFIGNKHDPYSDIGLVSA 490 Query: 424 -NGRNETLINTPAYASDPQWV 443 G L N+ ++ PQWV Sbjct: 491 QGGEITNLTNSGYTSTSPQWV 511 >gi|294777459|ref|ZP_06742910.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides vulgatus PC510] gi|294448527|gb|EFG17076.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides vulgatus PC510] Length = 1074 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 I------SQDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 + S+D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMSEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R ++ + + ++ V + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLAVTARGE----VFDVPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSIEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|325299351|ref|YP_004259268.1| peptidase S41 [Bacteroides salanitronis DSM 18170] gi|324318904|gb|ADY36795.1| peptidase S41 [Bacteroides salanitronis DSM 18170] Length = 1080 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTK 365 A SPD ++I F K +Y ++++G + R++ + SY PVWSP G IAF Sbjct: 28 AVISPDGNEIAFCY----KGDIYKVKASGGEAVRLTT--QPSYESTPVWSPDGKQIAFAS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS-------- 416 + +M G + R L +S + P+ ++P G+ ++FS GS Sbjct: 82 DRFGNMDVFIMPSQGGEARRLTFNSASEIPSAFTPDGKQVVFSASIQDPAGSALFPKSAM 141 Query: 417 -KLYSIDL-NGRNETLINTPA 435 +LY + GR +I TPA Sbjct: 142 TELYQVPAEGGRTAQIIGTPA 162 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V RLT + +SPD QI F SDR G +++M S G + +R++ Sbjct: 44 DIYKVKASGGEAVRLTTQPSYESTPVWSPDGKQIAFASDRFGNMDVFIMPSQGGEARRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + AS ++P G + F+ Sbjct: 104 FNS-ASEIPSAFTPDGKQVVFS 124 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 34/220 (15%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGKRALI 274 E SP+ ++VA+ ++R + T ++ K+I + F ++ + + Sbjct: 320 EATVSPDGKQVAF-------VVRGEVFVTSVEYGTTKQITHTPEAEEGVSFGADNRTLVY 372 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISA------------SYSPDSSQIVFESDR 322 + ++D +Y+ + + N I A +SPD +I F Sbjct: 373 ASERDGISGLYTAKISREEEKNFPNATLIEEEALLPSKTVERSYPKFSPDGKEIAF---I 429 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASY-----FDPVWSPQGDLIA--FTKFSGEKFA-IG 374 EG+ +L V+ ++++ D Y FD WSP G A F E ++ IG Sbjct: 430 EGRTRLMVLNLKSKKVRQVT-DGSTWYSLSGGFDYQWSPDGKWFALEFIAHKHEPYSDIG 488 Query: 375 VMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDG 412 ++ DG + + +S + P W+ G +L+F+ ++ G Sbjct: 489 LVCADGKSPIINLTNSGYTSGMPRWTMDGNALLFTTERYG 528 >gi|297161910|gb|ADI11622.1| hypothetical protein SBI_08504 [Streptomyces bingchenggensis BCW-1] Length = 1078 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 32/168 (19%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G R + VQ ++S+ + A LT +SPD + + R G Sbjct: 76 LSPSGDRLVAEVQNV----LWSLPRKGGAATALTPPDLEPTRPVFSPDGKLLAICAYRGG 131 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK------FSGEKFAI--- 373 L+ ++ +GSD + Q + + D P WSP G IAF +G + + Sbjct: 132 GFHLWTLRPDGSD---VRQRTDGPWDDRGPAWSPDGTRIAFASERGGDTVAGSPYRVWVL 188 Query: 374 -----------GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 GV +DG + + ED + P WSP G ++F R + Sbjct: 189 EVATGELTRLTGVPGQDGPLQDGVWEDFD---PAWSPDGERVLFVRGR 233 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQG 358 T N +A+ SP ++V E + L+ + G ++ D E + PV+SP G Sbjct: 67 TGATNGAATLSPSGDRLVAEV----QNVLWSLPRKGGAATALTPPDLEPTR--PVFSPDG 120 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDT 414 L+A + G F + ++ DGS R + + + P WSP G + F+ ++ GDT Sbjct: 121 KLLAICAYRGGGFHLWTLRPDGSDVRQRTDGPWDDRGPAWSPDGTRIAFASERGGDT 177 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 28/186 (15%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +GK I + ++++ + + T+ + + ++SPD ++I F S+R Sbjct: 114 PVFSPDGKLLAICAYRGGGFHLWTLRPDGSDVRQRTDGPWDDRGPAWSPDGTRIAFASER 173 Query: 323 EGKE------QLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFT--K 365 G +++V++ + R++ QD FDP WSP G+ + F + Sbjct: 174 GGDTVAGSPYRVWVLEVATGELTRLTGVPGQDGPLQDGVWEDFDPAWSPDGERVLFVRGR 233 Query: 366 FSGEKF---AIGVMKKDGSQERLLVEDS------NLQAPTWSPSGRSLIFSRKKDGDTGS 416 +G + ++ DGS + VE + + AP+ SP G +L + R S Sbjct: 234 LTGAALDARTVASVRADGSGP-VAVEHTEAAAGVQVLAPSVSPGG-TLAYLRTTPAPDAS 291 Query: 417 KLYSID 422 +D Sbjct: 292 CTLVVD 297 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 24/204 (11%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRALI 274 P SP+ +KVA+A + +++ T R P+RI + +L P ++ +G+ + Sbjct: 377 PALSPDGRKVAFAALNS-----LWVAGTTGGRGPRRIVRASPTRYLLGPTWTPDGRALIY 431 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + +D + ++ DL S L + ++ + S + D + D G L + + Sbjct: 432 ADDRDGLLAVHRRDLASGEETTLASGGRVHPALSPAGDRLACI---DMSGNLVLRDLAAG 488 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERL-- 385 P WSP G IA+ +F I ++ RL Sbjct: 489 TERTLAAPLGGGGLPGRPSWSPDGRFIAYCDRNRLNQRFREGYNLIRIVDAGSGAARLYA 548 Query: 386 LVEDSNLQ-----APTWSPSGRSL 404 L ++L P WSP GR L Sbjct: 549 LAPHTSLSDRYDSGPVWSPDGRHL 572 >gi|269837974|ref|YP_003320202.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787237|gb|ACZ39380.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 652 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSNGSDQKRI 341 I+ V RLT + + + +SPD ++ F SDR GK Q+YV+ G + R+ Sbjct: 48 IWLVAADGGTPRRLTTSEAADGAPRWSPDGRRLAFVSDRLERGKPQVYVLDLAGGEAVRV 107 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKF 366 + E WSP G L+A+T Sbjct: 108 TA-AEGGVGQAAWSPDGSLLAYTAM 131 >gi|303328322|ref|ZP_07358760.1| putative TolB protein [Desulfovibrio sp. 3_1_syn3] gi|302861652|gb|EFL84588.1| putative TolB protein [Desulfovibrio sp. 3_1_syn3] Length = 442 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/327 (18%), Positives = 147/327 (44%), Gaps = 27/327 (8%) Query: 126 VEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 V+ R ++ ++ GK++ + ++A D+ +++TG F S + FV ++ Sbjct: 126 VQIRAFETNTGGRLFGKEYPKVNKRDLPEVADRFCADLLEALTGNGAFFRSTLAFVKKT- 184 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMD 243 G + ++ ++ G ++R +T + L P +SP+ + V ++ D + L V+ Sbjct: 185 --GKMSANVWLVKPTGRDLRQITNIPGEAL-SPAWSPDGRFVVFSHIDPKSHALGVW--- 238 Query: 244 TRIDRAPKRIGNFR---SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 DR+ ++ R ++++ P F + K A +++ + I+ ++ L + Sbjct: 239 ---DRSTGKVQRIRFPGNVVIGPAFMPDNKVA-VALSNGKYPVIFLLNHVFQKERVLEQS 294 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGD 359 IN+S ++ +++ F S R G Q+++ R+S K +Y + SP G Sbjct: 295 NAINVSPTFDSTGTKMAFTSSRLGGPQIFLKDLGSGSITRVS--KNGTYNTEANLSPDGT 352 Query: 360 LIAFTKFSGEKFAIGVMKKD---GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 L+ +++ + F + +D G + ++ + + P++ + F+ ++G G Sbjct: 353 LVVYSRMT--DFGHRIFVQDMLTGMERQITFGPGSDEQPSFCADSYFIAFASTRNG--GR 408 Query: 417 KLYSIDLNGRNETLINTPAYASD-PQW 442 +Y +G + + T A+ P+W Sbjct: 409 GIYLTTRHGGDAKQVPTGGGAASFPRW 435 >gi|268315717|ref|YP_003289436.1| WD40 domain-containing protein beta Propeller [Rhodothermus marinus DSM 4252] gi|262333251|gb|ACY47048.1| WD40 domain protein beta Propeller [Rhodothermus marinus DSM 4252] Length = 970 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%) Query: 262 APRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQIV 317 AP F+ +G+R A +SV D A + +DL++ A R T ++ + + PD +V Sbjct: 393 APTFAPDGRRLAFVSV-ADGAAHLQVLDLEAGAV-RWTKAFPASVRIGTVRWRPDGRALV 450 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 F+ EG+ + V+ +D + D PVWSP+G +AFT Sbjct: 451 FDRFVEGRRRDLVLWYPETDSLVVLTDGRHDDRGPVWSPEGRHLAFTSL 499 >gi|208822605|ref|ZP_03262924.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4042] gi|208738090|gb|EDZ85773.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4042] Length = 169 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 43/167 (25%) Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + NG Sbjct: 1 MSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 60 Query: 336 SDQKRI----SQDKEA------------------------------------SYFD--PV 353 +RI SQ+++A ++ D P Sbjct: 61 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPS 120 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 121 LAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 167 >gi|327402631|ref|YP_004343469.1| peptidase S41 [Fluviicola taffensis DSM 16823] gi|327318139|gb|AEA42631.1| peptidase S41 [Fluviicola taffensis DSM 16823] Length = 1088 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 32/196 (16%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 G + +AP NGK + + D +++V L++ T+++TNT + S+SPD Sbjct: 323 GGASEIAVAP----NGKEVVFTNHGD----VFTVSLENGVTKQITNTPEEERNVSFSPDG 374 Query: 314 SQIVFESDREG-----------KEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++ S+R KE Y S ++ I DKE+ F P +SP G I Sbjct: 375 KAILYASERNKIWGIYQTTMIRKEDAYFYVSTLLKEEALIVTDKES--FQPQYSPDGKEI 432 Query: 362 AFTKFSGEKFAIGVMKKDGSQER-LLVEDSNL------QAPTWSPSGRSLIFSRKKDGDT 414 AF + + A+ V + R +L E N Q W+P + ++ S +DG+ Sbjct: 433 AFLE---NRTAVSVYNLASKKIRNVLPETKNYSYSDGDQTFNWAPDSKYILVSFLQDGNW 489 Query: 415 GSKLYSIDLNGRNETL 430 ++ +D++G L Sbjct: 490 HEQIGLVDVSGGKPML 505 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 25/190 (13%) Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++ +M R+ P+ + P S +GK + + + D IY V Sbjct: 9 MIGAMIMSLRMPTPPQEASTNPLWMRYPVISPDGKTIVFTYKGD----IYQVPAAGGVAA 64 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV-- 353 +T + + +SPD I F SDR G ++ + G KR++ Y + Sbjct: 65 PVTLSGAHDFMPVFSPDGKTIYFASDRHGNFDVFSVPLQGGATKRLTFHSSNDYPQCLSD 124 Query: 354 -------WSPQGDLIAFTKFS----GEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPS 400 + +GD A ++F GE +++G+ DG +E+ L + N++ W+ + Sbjct: 125 DGKRIIFIAARGDNAAMSQFPYGALGEVYSVGI---DGGREKQELSITAENIK---WNKA 178 Query: 401 GRSLIFSRKK 410 G ++F KK Sbjct: 179 GTKMLFHDKK 188 >gi|149918086|ref|ZP_01906579.1| WD40-like Beta Propeller [Plesiocystis pacifica SIR-1] gi|149821091|gb|EDM80497.1| WD40-like Beta Propeller [Plesiocystis pacifica SIR-1] Length = 399 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 42/157 (26%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY + + + L + + A+ SP IVF S R+G +LYVM +G + +R+ Sbjct: 180 FDIYVANADGSDPKVLAASPGYDAEATVSPAGDTIVFTSTRDGDPELYVMDIDGQNLRRL 239 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEK------------------------------F 371 + +P D AF F G+K Sbjct: 240 TN-----------APGYDGGAFFSFDGKKIIWRANRPTTADEQAKYTELREEGLVRPTAL 288 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFS 407 + VM DGS++R++ + P W P G +IFS Sbjct: 289 ELMVMNADGSEQRVITNNGAANFGPFWHPDGERVIFS 325 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 30/165 (18%) Query: 275 SVQKDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 S + D D I+++DL+ T ++ A + P +IV Y Sbjct: 108 STRGDMGCDQIFTMDLEGRGTTMVSTGKGRTTCAYFLPKDERIV-----------YASTH 156 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +D D+ Y VW ++F I V DGS ++L Sbjct: 157 AAADDCLPPPDRSKGY---VWKLY-----------DEFDIYVANADGSDPKVLAASPGYD 202 Query: 394 A-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAY 436 A T SP+G +++F+ +DGD +LY +D++G+N L N P Y Sbjct: 203 AEATVSPAGDTIVFTSTRDGD--PELYVMDIDGQNLRRLTNAPGY 245 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 21/119 (17%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--- 322 S G + + +D ++Y +D+ RLTN + A +S D +I++ ++R Sbjct: 208 SPAGDTIVFTSTRDGDPELYVMDIDGQNLRRLTNAPGYDGGAFFSFDGKKIIWRANRPTT 267 Query: 323 --------EGKE---------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 E +E +L VM ++GS+Q+ I+ + A+ F P W P G+ + F+ Sbjct: 268 ADEQAKYTELREEGLVRPTALELMVMNADGSEQRVITNNG-AANFGPFWHPDGERVIFS 325 >gi|159901323|ref|YP_001547570.1| hypothetical protein Haur_4812 [Herpetosiphon aurantiacus ATCC 23779] gi|159894362|gb|ABX07442.1| hypothetical protein Haur_4812 [Herpetosiphon aurantiacus ATCC 23779] Length = 362 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 309 YSPDSSQIVFESDREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +SPD ++V RE + +L + Q ++ + F PVWSP G IAF Sbjct: 217 WSPDDQRLVISVLRESQAGFRNELILFDLMTEQQTPLTSQTDTDDFTPVWSPDGTKIAFV 276 Query: 365 KFSGE--KFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDG--DTGSKL 418 + + E + I V+ DGS+ R + P W+P + L+++R G + S + Sbjct: 277 RRTREVPRGEIWVVNADGSEPRAITAGGGYDNVDPQWTPDSQQLLWTRLTVGSANVPSAI 336 Query: 419 YSIDLNGRNE 428 ++++L +E Sbjct: 337 WTVNLAENSE 346 >gi|53711360|ref|YP_097352.1| putative Tricorn-like protease [Bacteroides fragilis YCH46] gi|52214225|dbj|BAD46818.1| putative Tricorn-like protease [Bacteroides fragilis YCH46] Length = 1090 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 18/140 (12%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G R++ + SY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVSAGGGTAIRLTT--QPSYECTPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F I VM G + L S+ + P+ ++P G+ ++FS + S +L Sbjct: 85 GNFDIFVMPATGGTAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTEL 144 Query: 419 YSIDLN-GRNETLINTPAYA 437 Y + +N GR E ++ TPA A Sbjct: 145 YKVPVNGGRTEQVLGTPAEA 164 >gi|150007868|ref|YP_001302611.1| putative peptidase/protease family protein [Parabacteroides distasonis ATCC 8503] gi|149936292|gb|ABR42989.1| putative peptidase/protease family protein [Parabacteroides distasonis ATCC 8503] Length = 1080 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ +ASY P+WSP G IAF Sbjct: 30 SPDGTEIAFCY----KGDIYKVPAKGGTATQLT--TQASYECTPIWSPDGKQIAFASDRN 83 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L S + P+ ++P G+ ++FS S +L Sbjct: 84 GNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTEL 143 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 144 YKVPVGGGRTEQVLGTPA 161 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G L+VM SNG + ++ Sbjct: 43 DIYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGNFDLFVMPSNGGTAQCLT 102 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 103 T-HSASEIPSAFTPDGKYVLFS 123 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 43/201 (21%), Positives = 87/201 (43%), Gaps = 34/201 (16%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK+ ++++ + ++ N T+++T+T +SPD+ + + S+R G Sbjct: 322 SPDGKQIALTLRGE----VFVTSADYNTTKQITHTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 326 EQLYVMQSNGSDQKRI-------------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 QLY+ + ++ S+ E +Y P +SP G +AF + ++ Sbjct: 378 WQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNY--PQFSPDGKELAFIE---DRMR 432 Query: 373 IGVMKKDGSQERLLVEDSNLQAP------TWSPSGRSLIFSRKKDGDTGSKLYSIDL--- 423 + V+ + + R + + S + +WSP G+ F+ + G+ I L Sbjct: 433 LMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGK--WFTLRFIGNKHDPYSDIGLVSA 490 Query: 424 -NGRNETLINTPAYASDPQWV 443 G L N+ ++ PQWV Sbjct: 491 QGGEITNLTNSGYTSTSPQWV 511 >gi|218961137|ref|YP_001740912.1| putative tricorn protease (tri); putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167729794|emb|CAO80706.1| putative tricorn protease (tri); putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 1053 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ V R+TNT + +SPD + F SDR G+ +Y+M + G + K ++ Sbjct: 49 DLWLVPFAGGIPRRITNTTSYEWNPQFSPDGKMLAFSSDRSGQNLIYIMPATGGEAKAVN 108 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK--DGSQERLLVEDSNLQAPTWSPS 400 + S+ W + TK+S ++ + K +GS+ LL E + A T SP Sbjct: 109 YE---SFRISEWFSDSQNLLCTKYS-PRWGLSFYKVPINGSRPVLLAEIGSSFA-TLSPD 163 Query: 401 GRSLIF-----SRKKD--GDTGSKLYSIDLNGRNET-LINT 433 + ++F SR++ G +L+ IDL + T L NT Sbjct: 164 NKQIVFQKGGYSRREAYRGSGNGELWLIDLPTKKYTKLTNT 204 >gi|323343852|ref|ZP_08084079.1| tricorn family protease MdsD [Prevotella oralis ATCC 33269] gi|323095671|gb|EFZ38245.1| tricorn family protease MdsD [Prevotella oralis ATCC 33269] Length = 1102 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 22/138 (15%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +S SPD + I F K ++ + G + ++++ + + P+WSP G+ IAF Sbjct: 62 SSISPDGTTIAFSY----KGDIFTIPVQGGNARQLTSNAAYESY-PIWSPDGERIAFVST 116 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWS------------PSGRSLIFSRKKDGD 413 + I VM KDG + + L DS + P TW P+ +S+ F+ + Sbjct: 117 REGSYDIYVMSKDGGEPKRLTTDSGNEIPMTWRDNEHILFETTGMPTAKSIYFASSQ--- 173 Query: 414 TGSKLYSIDLNGRNETLI 431 ++Y D+ G L+ Sbjct: 174 -FPQVYETDVKGSRPRLV 190 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+++ +Q +LT+ +SPD +I F S REG +YVM +G + KR++ Sbjct: 78 DIFTIPVQGGNARQLTSNAAYESYPIWSPDGERIAFVSTREGSYDIYVMSKDGGEPKRLT 137 Query: 343 QD 344 D Sbjct: 138 TD 139 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 21/180 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY--VMQSNGSDQKR 340 D+Y + T+++T+T S ++PD I + S+R G Q+Y +++ G Q Sbjct: 365 DVYVTSIDYRTTKQITDTPEQERSIDFAPDGRSIAYASERNGLWQIYQTTIKNKGEKQFT 424 Query: 341 ISQDKE--------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK------DGSQERLL 386 + D E ++ F P++SP G IAF + A+ + K DG + Sbjct: 425 YATDLEETQLVKSDSTSFQPLYSPDGKSIAFLENRNTLRAVDLKSKTVRTLMDG-KYNYS 483 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASDPQWV 443 D ++ TWSP R L+ S G +K L S NG L + + +WV Sbjct: 484 YSDGDVWC-TWSPDSRWLLASYIGYGGWNNKDIALVSASGNGEIYNLTESGYNDGNGKWV 542 >gi|256840125|ref|ZP_05545634.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739055|gb|EEU52380.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1080 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ +ASY P+WSP G IAF Sbjct: 30 SPDGTEIAFCY----KGDIYKVPAKGGTATQLT--TQASYECTPIWSPDGKQIAFASDRN 83 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L S + P+ ++P G+ ++FS S +L Sbjct: 84 GNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTEL 143 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 144 YKVPVGGGRTEQVLGTPA 161 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G L+VM SNG + ++ Sbjct: 43 DIYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGNFDLFVMPSNGGTAQCLT 102 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 103 T-HSASEIPSAFTPDGKYVLFS 123 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 30/184 (16%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI- 341 +++ N T+++T+T +SPD+ + + S+R G QLY+ + ++ Sbjct: 335 EVFVTSADYNTTKQITHTPAAETGICFSPDNRTLAYASERGGNWQLYLAKIARKEEANFP 394 Query: 342 ------------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 S+ E +Y P +SP G +AF + ++ + V+ + + R + + Sbjct: 395 NATIIEEEVLLPSKTVERNY--PQFSPDGKELAFIE---DRMRLMVVNLETKKVRQVTDG 449 Query: 390 SNLQAP------TWSPSGRSLIFSRKKDGDTGSKLYSIDL----NGRNETLINTPAYASD 439 S + +WSP G+ F+ + G+ I L G L N+ ++ Sbjct: 450 STWYSTAGGFDYSWSPDGK--WFTLRFIGNKHDPYSDIGLVSAQGGEITNLTNSGYTSTS 507 Query: 440 PQWV 443 PQWV Sbjct: 508 PQWV 511 >gi|332798918|ref|YP_004460417.1| copper amine oxidase-like domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696653|gb|AEE91110.1| copper amine oxidase-like domain-containing protein [Tepidanaerobacter sp. Re1] Length = 571 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 15/148 (10%) Query: 295 ERLTNTLFINISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ++LT++ ++ + +S D + ++ S L+V++++G ++ D E Y DP Sbjct: 185 KQLTDSGYVEL-IGWSADGEWLSYKYASSESAPAYLWVVRADGKAASQV--DTEPIYGDP 241 Query: 353 VWSPQGDLIAFT--KFSGEKF-AIGVMK-----KDGSQERLLVEDSNLQAPT--WSPSGR 402 +WSP+ D IA+T K S + + GV++ +G + L+E+ ++ P+ W P G Sbjct: 242 LWSPKDDRIAYTVMKDSTDGYIPAGVVRYADITAEGIKANTLLEEDSITIPSLAWHPGGE 301 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETL 430 S+ S + + L ++L G L Sbjct: 302 SITISFPRTAEQPPTLVQVNLAGEQTVL 329 >gi|221311165|ref|ZP_03593012.1| hypothetical protein Bsubs1_17491 [Bacillus subtilis subsp. subtilis str. 168] gi|221315492|ref|ZP_03597297.1| hypothetical protein BsubsN3_17407 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320407|ref|ZP_03601701.1| hypothetical protein BsubsJ_17370 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324691|ref|ZP_03605985.1| hypothetical protein BsubsS_17521 [Bacillus subtilis subsp. subtilis str. SMY] gi|255767740|ref|NP_391103.2| acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis str. 168] gi|251757426|sp|P39839|YUXL_BACSU RecName: Full=Uncharacterized peptidase yuxL gi|225185368|emb|CAB15213.2| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis str. 168] Length = 657 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYSVDL-----QSNATERLTNTLFINISASYSPDSSQI 316 P+++ +G RA + Q ++ D Y+ ++ ++ + T+ + +SPD + Sbjct: 19 PQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPDGRTL 78 Query: 317 VFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 F SDREG QLY+M + G + ++++ D P+WSP G+ I T GE +I Sbjct: 79 AFISDREGDAAQLYIMSTEGGEARKLT-DIPYGVSKPLWSPDGESILVTVSLGEGESI 135 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 10/149 (6%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +PR+SP+ + +A+ + + D ++Y+M T A +++ + + P +S +G+ L++ Sbjct: 68 DPRWSPDGRTLAFISDREGDAAQLYIMSTEGGEA-RKLTDIPYGVSKPLWSPDGESILVT 126 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 V E S+D + + + + SY D + R QL ++ Sbjct: 127 VSLGEGE---SIDDREKTEQDSYEPVEVQ-GLSYKRDGKGLT----RGAYAQLVLVSVKS 178 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + K ++ K A + DP +SP G + F+ Sbjct: 179 GEMKELTSHK-ADHGDPAFSPDGKWLVFS 206 >gi|291485687|dbj|BAI86762.1| hypothetical protein BSNT_04770 [Bacillus subtilis subsp. natto BEST195] Length = 657 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYSVDL-----QSNATERLTNTLFINISASYSPDSSQI 316 P+++ +G RA + Q ++ D Y+ ++ ++ + T+ + +SPD + Sbjct: 19 PQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPDGCTL 78 Query: 317 VFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 F SDREG QLY+M + G + ++++ D P+WSP G+ I T GE Sbjct: 79 AFISDREGDAAQLYMMSAEGGEARKLT-DIPYGVSKPIWSPDGESILVTVSLGE 131 >gi|116624085|ref|YP_826241.1| peptidase S9B dipeptidylpeptidase IV subunit [Candidatus Solibacter usitatus Ellin6076] gi|116227247|gb|ABJ85956.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 577 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 15/176 (8%) Query: 263 PRFSSNGKRALISVQ---KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P S +GKR S + K A ++ +L S +LT +I+ +SPD + F Sbjct: 54 PSISPDGKRLAYSARESSKVSAFHVFVRELPSGKPLQLTKGEGNDIAPVWSPDGGTLAFV 113 Query: 320 SDREGKEQLYVMQSNGSDQKRISQ-----DKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +GK + VM ++G D+++I++ D + W P + + +GEK G Sbjct: 114 RVEDGKRECIVMPADGGDERKIAELGAAADSTQPAPEVSWKPDSKSLVVVQ-NGEKQLPG 172 Query: 375 V--MKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + DG +R+ + P + SG S+ F R D G+ ++ D G Sbjct: 173 LATLTLDGKLQRITNPGEGTEGDSTPAVAASGSSIAFVRHTQND-GADIFLCDATG 227 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF---TK 365 +SPD +++ SD+ G E+++V +NG D+ +I+Q K WSP + F T Sbjct: 334 WSPDGTRVADVSDQTGSEEIFVSDANGQDRVQITQFKGPRVKSVRWSPDSKGLIFDLSTD 393 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 E FA+ LL N ++S G+++ F + + Sbjct: 394 HGWEVFAVPATAGQKPVRVLL----NANNASYSHDGKTIYFQSRGE 435 >gi|321312767|ref|YP_004205054.1| putative acylaminoacyl-peptidase [Bacillus subtilis BSn5] gi|320019041|gb|ADV94027.1| putative acylaminoacyl-peptidase [Bacillus subtilis BSn5] Length = 657 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYSVDL-----QSNATERLTNTLFINISASYSPDSSQI 316 P+++ +G RA + Q ++ D Y+ ++ ++ + T+ + +SPD + Sbjct: 19 PQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPDGRTL 78 Query: 317 VFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 F SDREG QLY+M + G + ++++ D P+WSP G+ I T GE +I Sbjct: 79 AFISDREGDAAQLYIMSTEGGEARKLT-DIPYGVSKPLWSPDGESILVTVSLGEGESI 135 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +PR+SP+ + +A+ + + D ++Y+M T A +++ + + P +S +G+ L++ Sbjct: 68 DPRWSPDGRTLAFISDREGDAAQLYIMSTEGGEA-RKLTDIPYGVSKPLWSPDGESILVT 126 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 V E S+D + + + + S SY D + R QL ++ Sbjct: 127 VSLGEGE---SIDDREKTEQDSYEPVEVQ-SLSYKRDGKGLT----RGAYAQLVLVSVKS 178 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + K ++ K A + DP +SP G + F+ Sbjct: 179 GEMKELTSHK-ADHGDPAFSPDGKWLVFS 206 >gi|225874010|ref|YP_002755469.1| peptidase, S9A/B/C family [Acidobacterium capsulatum ATCC 51196] gi|225793254|gb|ACO33344.1| peptidase, S9A/B/C family [Acidobacterium capsulatum ATCC 51196] Length = 696 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 101/246 (41%), Gaps = 57/246 (23%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + V+DR G R LT + L +SP+ +++ +L ++ T Sbjct: 120 VWVLDRRGGEARQLTDVKKGDLENYAWSPDSKEL---------LLTIHTGGT-------- 162 Query: 253 IGNFRSMILAPRFSSNGKRALIS----------------VQKDEAMDIYSVDLQSNATER 296 + A F+ GK LI + D+ +Y D+ + E+ Sbjct: 163 -------VSANDFNDPGKHKLIPPIVMTRYHFKQDVEGYLTADDHTYLYLYDIATGKMEK 215 Query: 297 LTNTLFINIS-ASYSPDSSQIVF------ESDREGKEQLYVMQS-NGSDQKRISQDKEAS 348 LT N S +SPD +I F E DR ++V+ + +G++ ++++ A Sbjct: 216 LTAGKQYNESDGVWSPDGKEIAFVSNHTAEPDRNINTDIFVVAAKHGAEPRQLTHYTGAD 275 Query: 349 YFDPVWSPQGDLIAFTKFSGEKF------AIGVMKKDGSQ-ERLLVE--DSNLQAPTWSP 399 WSP G LIAF + K+ +GV+ DGS R+L D + +P +S Sbjct: 276 AGPLSWSPDGKLIAFLRGGHVKYWQYQENHLGVIAADGSSPARILTSKFDRPVHSPQFSS 335 Query: 400 SGRSLI 405 G+S++ Sbjct: 336 DGKSIM 341 >gi|154687335|ref|YP_001422496.1| YuxL [Bacillus amyloliquefaciens FZB42] gi|154353186|gb|ABS75265.1| YuxL [Bacillus amyloliquefaciens FZB42] Length = 658 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 15/152 (9%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYS-----VDLQSNATERLTNTLFINISASYSPDSSQI 316 P+++ +G+RA + + D YS D +S + T N S +SPD ++ Sbjct: 19 PQYAPDGRRAAYVRTTVNHKRDSYSSAIMIYDTESGISNPWTFGDNRNTSPRWSPDGRRL 78 Query: 317 VFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSGEKFAI 373 F SDRE G QLY++ + G + K+ + D DP+W+P G L++ + S E+ Sbjct: 79 AFVSDRENGVPQLYIIDAAGGEAKQ-AADIPWGVSDPIWAPDGRSVLVSVSLTSAERADE 137 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 KK E + ++Q+ T+ G+ L+ Sbjct: 138 KEKKKHDEYEPV-----DIQSLTYKRDGKGLL 164 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 58/270 (21%), Positives = 106/270 (39%), Gaps = 67/270 (24%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PR+SP+ +++A+ + + + ++Y++D A K+ + + P ++ +G+ L+SV Sbjct: 69 PRWSPDGRRLAFVSDRENGVPQLYIIDAAGGEA-KQAADIPWGVSDPIWAPDGRSVLVSV 127 Query: 277 Q----------------KDEAMDIYS--------------------VDLQSNATERLTNT 300 + E +DI S + L++ ++LT+ Sbjct: 128 SLTSAERADEKEKKKHDEYEPVDIQSLTYKRDGKGLLNGSWAQLVLIHLETGEIQQLTDH 187 Query: 301 LFINISASYSPDSSQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + A++SPD Q+ F + D +Y+M K+I+ + S+ V+ Sbjct: 188 EADHYDAAFSPDGRQLAFTANLCELGDAGKPSDVYLMNLADGSLKQITPHR-GSFGSCVF 246 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKK----DGSQERL--------------LVEDSNLQA-- 394 SP G IA E F ++K D ERL L+ DS + Sbjct: 247 SPDGSYIAMLGHENE-FRNATLEKAWLYDVKTERLSCLTDMLDVHLSDALIADSIIGGVT 305 Query: 395 --PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 P W+ G+ + G TG SID Sbjct: 306 PRPVWTNDGQGFYVLGSEQGSTGIYYISID 335 >gi|218887448|ref|YP_002436769.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758402|gb|ACL09301.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 446 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 TRI R+ GN+ + AP S +G + D I+ D+ + + ++T Sbjct: 339 TRISRS----GNYNT---APSISPDGTLIAFARMTDFGHRIFVYDMVTQSERQVTFGPGT 391 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + + S++PDS + F S R G +Q+Y++ +G D KR+ + F P W Sbjct: 392 DETPSFAPDSYFLAFTSTRSGAKQIYLITRHGGDAKRVPTGAGDASF-PDWG 442 >gi|116625010|ref|YP_827166.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228172|gb|ABJ86881.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 896 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 14/130 (10%) Query: 247 DRAPKRIGNF--RSMILAPRFSSNGKRALISVQKDEAM---DIYSVDLQSNATERLTNTL 301 DRA R+G + P S +G+ + V +D A DI+ DL + RLT Sbjct: 615 DRAGNRLGTVGPSADYTNPALSPDGRLLAVCV-RDPATRKRDIWVYDLARGTSSRLTFDP 673 Query: 302 FINISASYSPDSSQIVFESDREGKEQLY--VMQSNGSDQK--RISQDKEASYFDPVWSPQ 357 + + ++SPD I+F SDR+G LY + G D+ + +DK + W+P Sbjct: 674 ADDFNPTWSPDGQSIIFASDRKGARDLYRKLASGTGPDEPLFQSGEDKSPEH----WTPD 729 Query: 358 GDLIAFTKFS 367 G + F S Sbjct: 730 GKFLLFNTGS 739 >gi|218129210|ref|ZP_03458014.1| hypothetical protein BACEGG_00785 [Bacteroides eggerthii DSM 20697] gi|317475185|ref|ZP_07934452.1| hypothetical protein HMPREF1016_01431 [Bacteroides eggerthii 1_2_48FAA] gi|217988588|gb|EEC54908.1| hypothetical protein BACEGG_00785 [Bacteroides eggerthii DSM 20697] gi|316908638|gb|EFV30325.1| hypothetical protein HMPREF1016_01431 [Bacteroides eggerthii 1_2_48FAA] Length = 1089 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 18/140 (12%) Query: 310 SPDSSQIVFESDREGKEQLY-VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y V G+ + +QD S +P+WSP G IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPAKGGAATQLTTQDSYES--NPIWSPDGRQIAFASDRY 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L +S + P+ ++P G+ ++FS S +L Sbjct: 85 GNFDVFVMPANGGAAQRLTTNSTGETPSAFTPDGKYILFSAAIQDPVESALFPRSAMTEL 144 Query: 419 YSIDL-NGRNETLINTPAYA 437 Y + + GR E ++ TPA A Sbjct: 145 YKVPVTGGRTEQVLGTPAEA 164 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + A +LT + +SPD QI F SDR G ++VM +NG +R++ Sbjct: 44 DIYKVPAKGGAATQLTTQDSYESNPIWSPDGRQIAFASDRYGNFDVFVMPANGGAAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + ++P G I F+ Sbjct: 104 TNSTGE-TPSAFTPDGKYILFS 124 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 352 PVW------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 P+W SP G IAF + G+ + V K G+ +L +DS P WSP GR + Sbjct: 22 PLWMRDIQISPDGTEIAFC-YKGDIYK--VPAKGGAATQLTTQDSYESNPIWSPDGRQIA 78 Query: 406 FSRKKDGD 413 F+ + G+ Sbjct: 79 FASDRYGN 86 >gi|255013432|ref|ZP_05285558.1| putative peptidase/protease family protein [Bacteroides sp. 2_1_7] Length = 1071 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G L+VM SNG + ++ Sbjct: 34 DIYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGNFDLFVMPSNGGTAQCLT 93 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 AS ++P G + F+ Sbjct: 94 T-HSASEIPSAFTPDGKYVLFS 114 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ +ASY P+WSP G IAF Sbjct: 21 SPDGTEIAFCY----KGDIYKVPAKGGTATQLT--TQASYECTPIWSPDGKQIAFASDRN 74 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F + VM +G + L S + P+ ++P G+ ++FS S +L Sbjct: 75 GNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTEL 134 Query: 419 YSIDL-NGRNETLINTPA 435 Y + + GR E ++ TPA Sbjct: 135 YKVPVGGGRTEQVLGTPA 152 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 42/190 (22%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ N T+++T+T +SPD+ + + S+R G QLY+ +I+ Sbjct: 326 EVFVTSADYNTTKQITHTPAAETGICFSPDNRTLAYASERGGNWQLYLA--------KIA 377 Query: 343 QDKEASYFD-------------------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + +EA++ + P +SP G +AF + ++ + V+ + + Sbjct: 378 RKEEANFPNATIIEEEVLLPSKTVERNYPQFSPDGKELAFIE---DRMRLMVVNLETKKV 434 Query: 384 RLLVEDSNLQAP------TWSPSGRSLIFSRKKDGDTGSKLYSIDL----NGRNETLINT 433 R + + S + +WSP G+ F+ + G+ I L G L N+ Sbjct: 435 RQVTDGSTWYSTAGGFDYSWSPDGK--WFTLRFIGNKHDPYSDIGLVSAQGGEITNLTNS 492 Query: 434 PAYASDPQWV 443 ++ PQWV Sbjct: 493 GYTSTSPQWV 502 >gi|118474869|ref|YP_892654.1| translocation protein TolB [Campylobacter fetus subsp. fetus 82-40] gi|118414095|gb|ABK82515.1| protein TolB [Campylobacter fetus subsp. fetus 82-40] Length = 421 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/213 (19%), Positives = 94/213 (44%), Gaps = 8/213 (3%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+++ Q Y T + +Y D + K I M++A SS+G + L+++ Sbjct: 195 PKWANKDQSAFYYTTYINLVPTLYKYDLATGKKTK-ITQSGGMLVASDVSSDGTKVLLTM 253 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D+ DIY D + R+T+ I+++ ++ + +++VF SDR G ++ NG Sbjct: 254 APDDQSDIYIYDTTTKKKSRITDFKGIDVNGNFVDNDTRVVFVSDRLGYPNIFATSINGG 313 Query: 337 DQKRI-----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +++ + + ++Y + V + + +S + F + ++ R L Sbjct: 314 AVEQMVFHGKNNNSVSTYQNYVVYSSRESVG--DYSAKTFNLYLISTKSDYIRQLTSGGV 371 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P +S G S++F + ++ + ++ N Sbjct: 372 NTYPRFSSDGGSIVFIKNAGNESAVGIIRVNEN 404 >gi|311746912|ref|ZP_07720697.1| MdsD protein [Algoriphagus sp. PR1] gi|126578602|gb|EAZ82766.1| MdsD protein [Algoriphagus sp. PR1] Length = 1077 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 39/277 (14%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K SL + +R+LT S+D ++ F + + + L V + + + Sbjct: 255 KQSLALTSLTDFPVRFLTISQDGLM---SFGYDGELYTLRKGESPKKLEVRIKTQAVSNS 311 Query: 250 PKRI---GNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 I G R M+++P NGK ALI+ +++ + + T+R+TNT Sbjct: 312 DSYIAINGGVREMVISP----NGKEIALIA-----RGEVFVTSVDGSMTKRITNTPEQER 362 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSD----------QKRISQDKEASYFDPVWS 355 +SPD +V+ S+R+GK +Y S+ ++++ KE ++P +S Sbjct: 363 FLDFSPDGKSLVYSSERDGKWSIYSSSKIRSEEPYFFASTLIEEKVLVSKEVDVYEPDYS 422 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-------QAPTWSPSGRSLIFSR 408 P G +A+ + ++ + VM + + L+ L Q TWSP + L+ + Sbjct: 423 PDGKKLAYVE---DRRTLKVMDLESQESVTLMTPDELFHMRDGDQYFTWSPDSKWLLATY 479 Query: 409 KKDGDTGSKLYSIDLNGRN--ETLINTPAYASDPQWV 443 S++ +D G+ + L + S P WV Sbjct: 480 NPTM-VNSEVVLLDATGKEPKKNLTKSGYGDSQPVWV 515 Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD S I F K L+++ S G D K+++ EA + PVWS G+ +AF Sbjct: 35 SPDGSLIAFTF----KGDLFLVSSTGGDAKQLTF-HEAHDYKPVWSKDGEQLAFASDRYG 89 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIF-------SRKKDGDTGSK--LY 419 F + +M G L SN + P +S +++IF + + TGS+ LY Sbjct: 90 NFDVFIMSAQGGPATRLTFHSNDEQPFDFSADNQNVIFGATRMDIAEHRQYPTGSQPELY 149 Query: 420 SI-DLNGRNETLINTPA 435 + +GR + + PA Sbjct: 150 QVPKKSGRVDQIWTIPA 166 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P SP G LIAFT F G+ F + D Q L +++ P WS G L F+ + Sbjct: 32 PAISPDGSLIAFT-FKGDLFLVSSTGGDAKQ--LTFHEAHDYKPVWSKDGEQLAFASDRY 88 Query: 412 GD 413 G+ Sbjct: 89 GN 90 >gi|149276287|ref|ZP_01882431.1| WD40-like repeat/amidohydrolase domain protein [Pedobacter sp. BAL39] gi|149232807|gb|EDM38182.1| WD40-like repeat/amidohydrolase domain protein [Pedobacter sp. BAL39] Length = 1080 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 18/156 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + L+ + + +SP+ I + SD+ G + +++M +GS +++++ Sbjct: 65 DIYVMPIIGGTATLLSGGIAWEVQPRFSPNGKYISYTSDKTGGDNIWIMNRDGSAKRQVT 124 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKFS-------GEKFAIGVMKKDGSQERLLVEDSNLQ- 393 ++ + W P + LIA ++ GE + + +G Q L + N Q Sbjct: 125 KETFRLLNNATWMPNSEYLIARKHYTGTRSLGAGEMWMYSIYGGEGVQ---LTKRKNDQQ 181 Query: 394 ---APTWSPSGRSLIFSRKKDGDTGSKL-YSIDLNG 425 P SPSGR L FS +D G YS D NG Sbjct: 182 DAGEPNVSPSGRYLYFS--EDMAPGPNFEYSKDPNG 215 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 23/204 (11%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 MI S++GK + + A +Y +L + ER+TN+ S D +++ Sbjct: 357 MIRQLTTSADGKMVVFNA----AGYLYKKELPNGIPERVTNSNEFEFEPKISSDGKYVIY 412 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------- 371 + + + S + D++ Y+ P +S +GD I F K G + Sbjct: 413 ATWNDDLKGAIKRADLKSGKTTTLTDEKGFYYSPSYSSKGDKIVFRKGVGNEVLGYSYGR 472 Query: 372 --AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 I +M +G + LV D+ ++ P ++ + F +G K SIDLNG NE Sbjct: 473 GTGIYLMSANGGA-KTLVSDNGIR-PQFNADDTRIYFQGYDNGKKAFK--SIDLNGANER 528 Query: 430 LINTPAYAS------DPQWVGFMD 447 T YA+ D +W+ F + Sbjct: 529 THYTSTYANQFAPSPDGKWMAFTE 552 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 20/171 (11%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISAS 308 P+R+ N P+ SS+GK + + D+ I DL+S T LT+ S S Sbjct: 388 PERVTNSNEFEFEPKISSDGKYVIYATWNDDLKGAIKRADLKSGKTTTLTDEKGFYYSPS 447 Query: 309 YSPDSSQIVFESDREGKEQL----------YVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 YS +IVF G E L Y+M +NG + +S + P ++ Sbjct: 448 YSSKGDKIVFRKGV-GNEVLGYSYGRGTGIYLMSANGGAKTLVSDNG----IRPQFNADD 502 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFS 407 I F + K A + +G+ ER + N AP SP G+ + F+ Sbjct: 503 TRIYFQGYDNGKKAFKSIDLNGANERTHYTSTYANQFAP--SPDGKWMAFT 551 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 27/171 (15%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI------LAPR 264 ++ FEP+ S + + V YAT++D+ + I RA + G ++ +P Sbjct: 395 NEFEFEPKISSDGKYVIYATWNDD-------LKGAIKRADLKSGKTTTLTDEKGFYYSPS 447 Query: 265 FSSNGKR---------ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 +SS G + ++ IY + A +++ I ++ D ++ Sbjct: 448 YSSKGDKIVFRKGVGNEVLGYSYGRGTGIYLMSANGGAKTLVSDN---GIRPQFNADDTR 504 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 I F+ GK+ + NG++++ A+ F P SP G +AFT+ Sbjct: 505 IYFQGYDNGKKAFKSIDLNGANERTHYTSTYANQFAP--SPDGKWMAFTEL 553 >gi|225874499|ref|YP_002755958.1| peptidase, S41B (tricorn core protease) family [Acidobacterium capsulatum ATCC 51196] gi|225793616|gb|ACO33706.1| peptidase, S41B (tricorn core protease) family [Acidobacterium capsulatum ATCC 51196] Length = 1099 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 13/196 (6%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 E SP+ +K+A + D VY+ + RI M + +S + + + + Sbjct: 349 EMALSPDGKKLAVIAHGD-----VYVTTEKDGGEAIRITRTPQMEASLHWSPDSTKLIYT 403 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +D DIY + + +LT+ ++PD I + DR+ Q++++ Sbjct: 404 SMRDGNSDIYEYNFDGSKETQLTHGTAQCEHPRWNPDGKAIAYIRDRK---QVHLLTLAS 460 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQER---LLVEDSN 391 + ++ DK S D +SP GD +A+T + + F I V+ G R L Sbjct: 461 GKDEVLATDKMWSP-DLEFSPAGDWLAYTIYGYDGFRNIKVVPTKGGAARSITFLANGET 519 Query: 392 LQAPTWSPSGRSLIFS 407 WSP G+ L+F+ Sbjct: 520 ADQMAWSPDGKYLLFA 535 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 20/149 (13%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE--RLTNTLFINISASYS 310 + +F M L+P +GK+ + D +Y V + + E R+T T + S +S Sbjct: 344 VSHFSEMALSP----DGKKLAVIAHGD----VY-VTTEKDGGEAIRITRTPQMEASLHWS 394 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PDS+++++ S R+G +Y +GS + +++ A P W+P G IA+ + ++ Sbjct: 395 PDSTKLIYTSMRDGNSDIYEYNFDGSKETQLTHGT-AQCEHPRWNPDGKAIAYIR---DR 450 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 + ++ ++ +L D WSP Sbjct: 451 KQVHLLTLASGKDEVLATDK-----MWSP 474 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 49/239 (20%), Positives = 90/239 (37%), Gaps = 38/239 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR------FSS 267 L +P SP+ Q++A+A+ D I P + G+ +I P +S Sbjct: 58 LTQPALSPDGQEIAFASGGD------------IWTVPAKGGDAHLLISNPATESRPLYSP 105 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREG 324 +G + + DIY + L + +R+T + ++S D I F SD + Sbjct: 106 DGSKIAFISTRTGGGDIYVLTLATGQLQRITYGDTLEQLDAWSADGKWIYFTNGASDIDY 165 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI---------------AFTKFSGE 369 +Y + + G +S + + F+ SP G + Sbjct: 166 NTDVYRVSAEGGTPMPVSAESYLAEFESAPSPDGKSVVMMAKGISDQQWWRDGHAHIDDT 225 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + G+ L+ +D+ P WS SG+++ + K G L+S+ NG E Sbjct: 226 ELWWKSLAPGGAYRVLVPDDAKHAWPMWSASGKTIYYMSDKTGP--ENLWSVSSNGGAE 282 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFE 319 P +S++GK K +++SV A ++LT+ F N + S IVFE Sbjct: 251 PMWSASGKTIYYMSDKTGPENLWSVSSNGGAEKQLTH--FTNGRVLWPSIGDHGKTIVFE 308 Query: 320 SD--------REGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFSGEK 370 + GK + ++ GS + + S+F + SP G +A G+ Sbjct: 309 RELTIWKMNTATGKAEQVPVELRGSPSGLGVEHEAVSHFSEMALSPDGKKLAVIAH-GDV 367 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + +KDG + + ++A WSP LI++ +DG+ S +Y + +G ET Sbjct: 368 YV--TTEKDGGEAIRITRTPQMEASLHWSPDSTKLIYTSMRDGN--SDIYEYNFDGSKET 423 Query: 430 -LINTPAYASDPQW 442 L + A P+W Sbjct: 424 QLTHGTAQCEHPRW 437 >gi|297184122|gb|ADI20241.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 365 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 22/192 (11%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR P G+ DIY DL + + L + + A+ SPD ++ Sbjct: 126 FRGDTACPAVPERGESGAYVWPIYADFDIYISDLNGHIVDTLISGPGYDAEATVSPDGTK 185 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQD---KEASYFDP--------VWSPQG------ 358 IVF SDR G +LY +GS+ +++ ++F P PQ Sbjct: 186 IVFTSDRSGDLELYTCDIDGSNIVQVTTGLGYDGGAFFSPDSKKLVFRSSRPQTEEEVKK 245 Query: 359 --DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG 415 DL++ I DGS+ + + N AP + PSG +IFS + G Sbjct: 246 YKDLLSQGMVEPTHMEIYTCNVDGSELTQVTQLGNANWAPFYHPSGTKIIFSTNHHSERG 305 Query: 416 S--KLYSIDLNG 425 L+ I+ +G Sbjct: 306 YPFNLFMINADG 317 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 28/184 (15%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + + + +++Y+ D+ + ++T L + A +SPDS ++VF S R Sbjct: 180 SPDGTKIVFTSDRSGDLELYTCDIDGSNIVQVTTGLGYDGGAFFSPDSKKLVFRSSRPQT 239 Query: 326 E--------------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 E ++Y +GS+ +++Q A++ P + P G I F+ Sbjct: 240 EEEVKKYKDLLSQGMVEPTHMEIYTCNVDGSELTQVTQLGNANW-APFYHPSGTKIIFST 298 Query: 366 FS----GEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFS--RKKDGDTGSKL 418 G F + ++ DG+ + D A P +S L+F+ R G + L Sbjct: 299 NHHSERGYPFNLFMINADGTGLEQVTYDGVFDAFPMFSSDCSKLVFASNRNNGGSRATNL 358 Query: 419 YSID 422 + +D Sbjct: 359 FIVD 362 >gi|73669318|ref|YP_305333.1| hypothetical protein Mbar_A1812 [Methanosarcina barkeri str. Fusaro] gi|72396480|gb|AAZ70753.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 575 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 308 SYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPV---------WSP 356 S SPD +I+ S G Q Y+ ++GS+ K + SY+D W P Sbjct: 271 SLSPDRKKILLVSGLPGSFDLQTYISNTDGSELK-----GKISYYDGTEKRILTKEYWQP 325 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G + + +G + +++ D +++ LL + N P W P G+ ++F K+ Sbjct: 326 NGSCLLVNQ-NGNLY---LVEGDENKKSLLYK-GNASEPQWFPDGKKILFVEGKN----- 375 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 KLYSID++G N T I + S W F D Sbjct: 376 KLYSIDVDGTNLTFITSFGLTSSYFWDLFCD 406 >gi|255936369|ref|XP_002559211.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583831|emb|CAP91851.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255] Length = 680 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/302 (19%), Positives = 114/302 (37%), Gaps = 93/302 (30%) Query: 193 LCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDD----EDILRVYLMDTRI 246 L + + DG N R L P + + FSP+ + +++ + D DI RV+ + + Sbjct: 79 LYIANADGTNERPLLKDPGYE---YHAEFSPDSEWISFTSERDGDGNSDIWRVHPDGSDL 135 Query: 247 DRAPKRIGNFRSMILAPRFSSNGK-RALISVQKDEAMDIYSVDLQSNATERLTNT----- 300 S++++P NG A +S +I+ +L++ A +T+T Sbjct: 136 QPIVTSPAAEDSVVISP----NGTLAAYVSTANTYNANIWVKNLETGAEWNITDTPNNRP 191 Query: 301 ----LFINISASYSPDSSQIVFESDR----EGKEQL----------------YVMQSNGS 336 + + ++SPD + + F SDR EG L Y+++ NGS Sbjct: 192 REDMMRGHFRPAWSPDGNWLAFSSDRNTRWEGHGNLTYLGLAGWEHTQELDIYIIRPNGS 251 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------------------- 371 D +R++ P WSP G + F + + + Sbjct: 252 DLRRVAHRDSHCLGSPKWSPDGQRLIFYEMTRNETWDAHRPETVADANSTIVSVGINGND 311 Query: 372 --------------------AIGVMKKDGSQERLLV-----EDSNLQAPTWSPSGRSLIF 406 IG K G++E L + ++ +++P+WSP G+ +++ Sbjct: 312 RRIEVGGPGVKTFPQYVTNSTIGYHLKGGNKEGLYLTNGTYSNTTIRSPSWSPDGKYVVY 371 Query: 407 SR 408 + Sbjct: 372 EK 373 >gi|77164951|ref|YP_343476.1| WD-40-like beta propeller repeat-containing protein [Nitrosococcus oceani ATCC 19707] gi|254433763|ref|ZP_05047271.1| hypothetical protein NOC27_694 [Nitrosococcus oceani AFC27] gi|76883265|gb|ABA57946.1| WD40-like Beta Propeller [Nitrosococcus oceani ATCC 19707] gi|207090096|gb|EDZ67367.1| hypothetical protein NOC27_694 [Nitrosococcus oceani AFC27] Length = 367 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 107/267 (40%), Gaps = 49/267 (18%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DG N+R ++ S + +P+ Q + YA+ +L D+ P + Sbjct: 96 MDADGKNVRQVS-SGKGVTTCSFIAPDDQAIIYAS--------THLAG---DQCPPK--- 140 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P +S L E DI+ D + RLT+T + YSP + Sbjct: 141 -------PDYSQGYVWPLY-----EGYDIFRADPEGGNRVRLTDTPGYDAEGVYSPKGDK 188 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDK---EASYF--DPVW------SPQGDLIAFT 364 I+F S R G +L++M +GS+ ++++ ++F D W P+G +A Sbjct: 189 IIFTSARTGDLELFMMNPDGSEVEQLTDQPGYDGGAFFSRDGQWIVWRASRPEGKALADY 248 Query: 365 K-------FSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGS 416 + + I +M + + L ++ P W P G+ +IFS G Sbjct: 249 QSLLKQGLIRPSQLEIFIMNLEERKPIQLTDNGAANFGPYWHPDGKHIIFSSNMHNPKGR 308 Query: 417 K--LYSIDLNGRN-ETLINTPAYASDP 440 L+ I+++ R E + + P + P Sbjct: 309 NFDLFLINVDTREIEQITHHPDFDGFP 335 >gi|197106224|ref|YP_002131601.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Phenylobacterium zucineum HLK1] gi|196479644|gb|ACG79172.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Phenylobacterium zucineum HLK1] Length = 654 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 7/175 (4%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDRE 323 FS +G+R LIS ++Y++ A + LTN+ +AS+ P +I+F +D+ Sbjct: 72 FSPDGQRILISSDATGVFNVYALPAAGGAPQPLTNSKTDATFAASWFPSDERILFTADQG 131 Query: 324 GKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSGEKFAIGVMKKD 379 G E LYV + +G + +K + F W+ GD + + + F + Sbjct: 132 GNELNHLYVREPDGKVRDLTPGEKLKAQF-LGWNAAGDTFYVGSNERDPQTFDVYAYSAK 190 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 RL+ +S S GR + + + LY DL G E + TP Sbjct: 191 DYARRLVFRNSGYTVGAISRDGRRAALVKARS-SADNDLYLADLEGGGEPKLITP 244 >gi|86158162|ref|YP_464947.1| WD-40-like beta propeller repeat-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774673|gb|ABC81510.1| WD-40 repeat-containing protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 1021 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP S +G+R +Q+ D+ + R+T+ ++ +++PD ++F SD Sbjct: 500 APSPSPDGQRIAFELQEGGRRDL--ALWEHGELRRVTDDDALDTGPAWTPDGRYLLFASD 557 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 R G LY ++ ++++ + E F P SP G IAF F + + + + D Sbjct: 558 RGGVYDLYAWEAATGAIRQVT-NVETGAFQPAVSPDGKTIAFVTFGRDGYDVATVPFD 614 >gi|307610341|emb|CBW99909.1| hypothetical protein LPW_16671 [Legionella pneumophila 130b] Length = 656 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 65/280 (23%) Query: 210 RDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIGNFR--SMILAPR 264 R Q + EP SP+ + VAY ++I + +D + F S P+ Sbjct: 32 RIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPK 91 Query: 265 FSSNGK--RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS---YSPDSSQIVFE 319 +S NGK L K+ I+ +Q N +LT +I+ S +SPDS++I F Sbjct: 92 WSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLT---YIDGEVSDFTWSPDSNRIAFI 148 Query: 320 SDR---------------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + + +G++ LY+++ +++ Y P Sbjct: 149 AQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYL-P 207 Query: 353 VWSPQGDLIAFTKFSGE------KFAIGVMK-KDGSQERLLVE----------DSNLQAP 395 WSP G IAF G+ + I +++ K G++ER L DSNL Sbjct: 208 AWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFPGSDMNPDYDSNL--- 264 Query: 396 TWSPSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLI 431 +WSP + + R + + ++L ID+N ++E +I Sbjct: 265 SWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKII 304 >gi|237724330|ref|ZP_04554811.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437199|gb|EEO47276.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 1074 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 IS------QDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 ++ +D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMPEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R +++ + + ++ + + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLVVTARGE----VFDIPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|212692488|ref|ZP_03300616.1| hypothetical protein BACDOR_01984 [Bacteroides dorei DSM 17855] gi|212664963|gb|EEB25535.1| hypothetical protein BACDOR_01984 [Bacteroides dorei DSM 17855] Length = 1074 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 IS------QDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 ++ +D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMPEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R +++ + + ++ + + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLVVTARGE----VFDIPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|288922582|ref|ZP_06416761.1| serine/threonine protein kinase with PASTA sensor(s) [Frankia sp. EUN1f] gi|288346056|gb|EFC80406.1| serine/threonine protein kinase with PASTA sensor(s) [Frankia sp. EUN1f] Length = 497 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 22/195 (11%) Query: 217 PRFSPNQQKVAYATYDDE-DILRVYLMDTR-IDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P SP+ +VAY D E +R D+R + P + +P FS +G I Sbjct: 276 PVLSPDASRVAYTNADGEITSVRTDGTDSRQVSDEPNGSSD------SPAFSPDG--GTI 327 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-LYVMQS 333 + ++ +Y+V+ + R T+ ++S S+QIV R G +Q +YV+ Sbjct: 328 AYARNIG-GVYAVNADGSGNRRRLATVSDAYELAWS-TSNQIVL---RRGDDQSIYVLSV 382 Query: 334 NGSDQKRISQDK--EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + + +R++ A +P WSP G +AF +G I ++ DGS R + Sbjct: 383 DDGNLRRLAGSPVPGAGAVEPAWSPDGGAVAFGVSTGG--GIYLVNADGSGLRQAAGPGS 440 Query: 392 LQAPTWSPSGRSLIF 406 P+WSP G +L++ Sbjct: 441 WH-PSWSPQG-ALVY 453 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 21/196 (10%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG + R ++ + P FSP+ +AYA +I VY ++ +R+ Sbjct: 300 DGTDSRQVSDEPNGSSDSPAFSPDGGTIAYA----RNIGGVYAVNADGSGNRRRLATVSD 355 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA---SYSPDSSQ 315 +SN I +++ + IY + + RL + A ++SPD Sbjct: 356 AYELAWSTSN----QIVLRRGDDQSIYVLSVDDGNLRRLAGSPVPGAGAVEPAWSPDGGA 411 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI-----AFTKFSGEK 370 + F G +Y++ ++GS + Q + P WSPQG L+ + +F G Sbjct: 412 VAFGVSTGGG--IYLVNADGSGLR---QAAGPGSWHPSWSPQGALVYVQDGSAARFFGAN 466 Query: 371 FAIGVMKKDGSQERLL 386 + +M DG+ R L Sbjct: 467 GTMRMMNPDGTGNRQL 482 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 19/163 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 I VD N ERL L + + SPD+S++ + ++ +G ++ ++++G+D +++S Sbjct: 258 IVVVDPTGN--ERL---LGLGDNPVLSPDASRVAY-TNADG--EITSVRTDGTDSRQVSD 309 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGR 402 + S P +SP G IA+ + G +A+ DGS R L S+ WS S + Sbjct: 310 EPNGSSDSPAFSPDGGTIAYARNIGGVYAV---NADGSGNRRRLATVSDAYELAWSTSNQ 366 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTP---AYASDPQW 442 I R+ D D + S+D +G L +P A A +P W Sbjct: 367 --IVLRRGD-DQSIYVLSVD-DGNLRRLAGSPVPGAGAVEPAW 405 >gi|313681892|ref|YP_004059630.1| translocation protein tolb [Sulfuricurvum kujiense DSM 16994] gi|313154752|gb|ADR33430.1| translocation protein TolB [Sulfuricurvum kujiense DSM 16994] Length = 415 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 90/414 (21%), Positives = 173/414 (41%), Gaps = 46/414 (11%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MKI L L ++ F A ++V SP++I + + D L K +++++ D Sbjct: 1 MKIILIFLTLVQ---FSWGADATLEVVKGVGGLSPLAIEDSSLQTSD-LSRKFTQMLAAD 56 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 + +F + Q + P+ QD AQ L+ R++ +G +R D Sbjct: 57 MNVVSLFT-VDQSYASVPFNSLSPSPQHQD-----AQYLIRYRLVDDGAGGMRA-----D 105 Query: 133 VKDRKQIIGKKFFSSPASWRK------IAHTISDDIYQSITGEKGDFNSR-ILFVSESVV 185 VK + G +FF+ ++ ++H I+ DI + G D+ R ++FV + Sbjct: 106 VKMLQN--GNEFFAKSYILKQSEMAVFLSHAIAYDINAKLGGSPIDWIKRKVVFVRLTSP 163 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD--EDILRVYLMD 243 K S V+ + + + S F + Q +V Y + D I ++ L Sbjct: 164 ----KRSEIVVSDYTLSYQKVVMSGGMYGFAKWANSEQSEVYYTSLLDFKPTIYKLSLQS 219 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + D+ G M + S + KR L+++ + DIY DL S A ++TN I Sbjct: 220 GKKDKIVSSDG----MAVCSDVSEDSKRLLLTLAPNGQPDIYLFDLTSGAKTQITNYSGI 275 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +++ + D S I F S+R G ++ + N + +SQ + S + + + Sbjct: 276 DVNGQFMGDGS-IAFVSNRLGYPNIFSTRMNST---AVSQLVYHGKNNSSLSSYKNFLVY 331 Query: 364 ------TKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 F+G F + ++ G+ +RL N P +S G ++++ +++ Sbjct: 332 KARENSATFAGNSFNLHLLSLNSGNVQRLTASGEN-DFPKFSYDGEAILYIKQE 384 >gi|322436331|ref|YP_004218543.1| peptidase S41 [Acidobacterium sp. MP5ACTX9] gi|321164058|gb|ADW69763.1| peptidase S41 [Acidobacterium sp. MP5ACTX9] Length = 1119 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 16/169 (9%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASY 309 +RI N + I S G RA+ + I +V ++ T LTNT + ++ Sbjct: 306 ERIENVSAEIEHAGISPTGIRAVFEAHGE----ILTVPVKHGPTRDLTNTPGAMERWPAW 361 Query: 310 SPDSSQIVFESDREGKEQLYVMQSN--GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +PD I + SD G L+V N G +K + A YF P WSP IAF Sbjct: 362 APDGQSIAYFSDESGLYALHVASQNDDGPVKKFPLAAEAAYYFQPKWSPDSKKIAFYDNR 421 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAP-----TWSPSGRSLIFSRKKD 411 + + ++ S V ++N + WSP R L +SR +D Sbjct: 422 LNLWMLDIVTGKLSH----VGENNFFSGIDRDYAWSPDSRWLAYSRTED 466 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP S +G S + D D++++ + +R+T I++ +++PD QI+F SD Sbjct: 70 APVVSPDGSTIAFSGEYDGNTDVFTIPIAGGIPKRVTYHPSIDVPVAWTPDGKQIIFRSD 129 Query: 322 REGKE---QLYVMQSNGSDQKRI 341 R+ QL+ + G K + Sbjct: 130 RQATSRFAQLFEVAPTGGVAKLL 152 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+++VD + RLT + I + SPD S I F + +G ++ + G KR Sbjct: 45 AGDLWTVDRKGGKATRLTAGVGIETAPVVSPDGSTIAFSGEYDGNTDVFTIPIAGGIPKR 104 Query: 341 ISQDKEASYFDPV-WSPQGDLIAF 363 ++ S PV W+P G I F Sbjct: 105 VTY--HPSIDVPVAWTPDGKQIIF 126 >gi|255010297|ref|ZP_05282423.1| putative peptidase/protease family protein [Bacteroides fragilis 3_1_12] Length = 1090 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPDS QI F SDR G +++M + G +R++ Sbjct: 44 DIYKVPAGGGVATQLTTQPSYECTPIWSPDSKQIAFASDRNGNFDIFIMPATGGTAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + AS ++P G I F+ Sbjct: 104 TNS-ASELPSTFTPDGKYILFS 124 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 18/140 (12%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ + SY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPAGGGVATQLTT--QPSYECTPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS---------KL 418 F I +M G + L +S + P T++P G+ ++FS S +L Sbjct: 85 GNFDIFIMPATGGTAQRLTTNSASELPSTFTPDGKYILFSASIQDPAQSAMFPTTAMTEL 144 Query: 419 YSIDLN-GRNETLINTPAYA 437 Y + N GR E ++ TPA A Sbjct: 145 YKVPSNGGRTEQVLGTPAEA 164 >gi|127512166|ref|YP_001093363.1| peptidase S41 [Shewanella loihica PV-4] gi|126637461|gb|ABO23104.1| peptidase S41 [Shewanella loihica PV-4] Length = 1104 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 46/302 (15%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN----QQKVAY 228 + R+ FVS+S SG +++ M DG ++R LT D + R QQ Sbjct: 236 WQDRLYFVSDS--SG--NDNIWSMTLDGKDLRQLTQFSDWQVRGARLEQGRVVFQQGADI 291 Query: 229 ATYD----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 YD L ++L +R + + + NG + +I+ + Sbjct: 292 KLYDIASNQVSTLDIHLTSDFPERREHWVNKPMKYATSTSLAPNGDKVVITARS------ 345 Query: 285 YSVDLQSNATERLTNTLFINISASY-------SPDSSQIVFESDREGKEQLYVMQSNGSD 337 V L RL + + Y SPD + SD G+++++ ++GSD Sbjct: 346 -HVALAGTDGSRLVE---LGLPGDYRVRGAVMSPDGKWVYGISDASGEQEIWRYSADGSD 401 Query: 338 Q-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP- 395 + K+++QD +A SP G IA ++G+ + + + K G ++L L P Sbjct: 402 EAKQLTQDGKALRMALSLSPDGRYIAHDDYNGDLWLLDL--KKGRNSKILTNGQGL-GPY 458 Query: 396 ---TWSPSGRSLIFSRKKDGDTGSK--LYSIDLNGRNETLIN------TPAYASDPQWVG 444 WS R + ++ + G + LYS++ R E L + +PA++ D QW+ Sbjct: 459 GDVVWSNDSRFIAVTKDERGQLRPQIVLYSLE-EERAEALTSDKYESFSPAFSDDGQWLY 517 Query: 445 FM 446 F+ Sbjct: 518 FI 519 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ L RLT+ + A+ S D Q+ F ++ EG ++YVM G KR+S Sbjct: 61 DLWIQQLGDAQARRLTSLPAQELGAAISNDGQQLAFVANYEGASEVYVMPIQGGVAKRVS 120 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + W+P G ++ T Sbjct: 121 FENSRVRVQG-WTPDGKVLYAT 141 >gi|288928608|ref|ZP_06422454.1| MdsD protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329592|gb|EFC68177.1| MdsD protein [Prevotella sp. oral taxon 317 str. F0108] Length = 1077 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPDS Q+ F S+REG +YVMQ G +R++ Sbjct: 45 DIYTVPTTGGTARQLTTNAAYDTHPVWSPDSKQLAFCSNREGSMDVYVMQREGGTPRRLT 104 Query: 343 QD 344 + Sbjct: 105 TN 106 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 24/140 (17%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTK 365 + SPD S + F K +Y + + G ++++ + A+Y PVWSP +AF Sbjct: 29 CAISPDGSAVAFTY----KGDIYTVPTTGGTARQLTTN--AAYDTHPVWSPDSKQLAFCS 82 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAP-------------TWSPSGRSLIFSRKKDG 412 + VM+++G R L +SN + P + PS +S+IF+ + Sbjct: 83 NREGSMDVYVMQREGGTPRRLTTNSNSETPIAFKDNNTVLYTSSIIPSAKSIIFANR--- 139 Query: 413 DTGSKLYSIDLNGRNETLIN 432 ++Y + NG L + Sbjct: 140 -MLPQVYEVGTNGSRPHLFS 158 >gi|313148096|ref|ZP_07810289.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136863|gb|EFR54223.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1081 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPDS QI F SDR G +++M + G +R++ Sbjct: 35 DIYKVPAGGGVATQLTTQPSYECTPIWSPDSKQIAFASDRNGNFDIFIMPATGGTAQRLT 94 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + AS ++P G I F+ Sbjct: 95 TNS-ASELPSTFTPDGKYILFS 115 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 18/140 (12%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ + SY P+WSP IAF Sbjct: 22 SPDGTEIAFCY----KGDIYKVPAGGGVATQLTT--QPSYECTPIWSPDSKQIAFASDRN 75 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS---------KL 418 F I +M G + L +S + P T++P G+ ++FS S +L Sbjct: 76 GNFDIFIMPATGGTAQRLTTNSASELPSTFTPDGKYILFSASIQDPAQSAMFPTTAMTEL 135 Query: 419 YSIDLN-GRNETLINTPAYA 437 Y + N GR E ++ TPA A Sbjct: 136 YKVPSNGGRTEQVLGTPAEA 155 >gi|265752719|ref|ZP_06088288.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235905|gb|EEZ21400.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1074 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 IS------QDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 ++ +D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMPEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R +++ + + ++ + + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLVVTARGE----VFDIPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|237709192|ref|ZP_04539673.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456888|gb|EEO62609.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1074 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 IS------QDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 ++ +D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMPEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R +++ + + ++ + + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLVVTARGE----VFDIPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|150003723|ref|YP_001298467.1| putative exported protease [Bacteroides vulgatus ATCC 8482] gi|149932147|gb|ABR38845.1| putative exported protease [Bacteroides vulgatus ATCC 8482] Length = 1074 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D+Y L ++LT+ + + A +SPD I F +G ++Y++ ++G + +R Sbjct: 41 AGDLYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTEVYLIPTDGGEPQR 100 Query: 341 IS------QDKEASYFDP-----VWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQER 384 ++ +D P W+P G I + F G+ ++I K G E Sbjct: 101 LTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLWSIS--KNGGMPEV 158 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR 408 + + + ++SP G+ L ++R Sbjct: 159 IPLPEGGFC--SYSPDGKKLAYNR 180 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF 318 + A S +G R +++ + + ++ + + T +T T N +SP+ QI + Sbjct: 315 LTAASLSPDGHRLVVTARGE----VFDIPAEKGVTRDITRTPGANEREGEWSPNGKQIAY 370 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 371 ISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT 416 >gi|311745523|ref|ZP_07719308.1| tol biopolymer transport system, periplasmic protein [Algoriphagus sp. PR1] gi|126578081|gb|EAZ82301.1| tol biopolymer transport system, periplasmic protein [Algoriphagus sp. PR1] Length = 305 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 19/166 (11%) Query: 261 LAPRF----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 L+P + S +GK + ++ DIY + + RLT+ ++ YSPD I Sbjct: 135 LSPSYWHGVSPDGKDIVYCAPRNGNYDIYKMSVNGGEEIRLTSEESLDDGPEYSPDGKYI 194 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKF 371 S R G Q++ ++ +GSD ++++ D +++F + SP + + G F Sbjct: 195 YINSYRTGMMQIWRIKPDGSDPEQMTFDNHSNWFAHI-SPNNKVATIITYLEDQKEGHPF 253 Query: 372 AIGVMKKDGSQERLLVED---------SNLQAPTWSPSGRSLIFSR 408 V + E V D + P+W+P G + R Sbjct: 254 GRQVKLRLLDLETKEVTDLTEEFYGGQGTINVPSWNPEGTKFAYVR 299 >gi|20091363|ref|NP_617438.1| hypothetical protein MA2535 [Methanosarcina acetivorans C2A] gi|19916497|gb|AAM05918.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 560 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 2/148 (1%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-AM 282 +K+ Y E +++++D R R+G ++ + G R + S + E Sbjct: 193 KKITYTQKAAEIPSQLWIVD-RDGSNKFRLGTSENVGTGKDWCPLGLRVIYSAKDSEDNS 251 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ +D RLTNT + S+SP+ I + SD G +++ G+ + R++ Sbjct: 252 DLWVIDFYGTNQVRLTNTSCNEWNPSFSPNGKWIAYVSDEGGSPDIWLRDIEGNYRSRVT 311 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + + P WSP G I F ++ E Sbjct: 312 NNTGSPDSVPKWSPDGSKIVFAGYNPEN 339 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 39/197 (19%), Positives = 95/197 (48%), Gaps = 13/197 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP---DSSQIVF 318 +P ++++G+ + +V+++++ ++ S ++++ + + A +S + ++++F Sbjct: 93 SPVWTADGQYIMYTVERNDSENLESYRMKADGSSIERTGIGEGNLAGFSDINLNGTELIF 152 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMK 377 + LY+ ++ D + S + W G I +T+ + E + ++ Sbjct: 153 TKSINSQPGLYLANLENGTVFPVADDPQISEYWGAWCRLGKKITYTQKAAEIPSQLWIVD 212 Query: 378 KDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINT-- 433 +DGS + RL ++ W P G +I+S KD + S L+ ID G N+ L NT Sbjct: 213 RDGSNKFRLGTSENVGTGKDWCPLGLRVIYS-AKDSEDNSDLWVIDFYGTNQVRLTNTSC 271 Query: 434 ----PAYASDPQWVGFM 446 P+++ + +W+ ++ Sbjct: 272 NEWNPSFSPNGKWIAYV 288 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRIS 342 ++ VD + RL + + + P ++++ + D E L+V+ G++Q R++ Sbjct: 208 LWIVDRDGSNKFRLGTSENVGTGKDWCPLGLRVIYSAKDSEDNSDLWVIDFYGTNQVRLT 267 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPS 400 + + ++P +SP G IA+ G I + +G+ + ++ P WSP Sbjct: 268 -NTSCNEWNPSFSPNGKWIAYVSDEGGSPDIWLRDIEGNYRSRVTNNTGSPDSVPKWSPD 326 Query: 401 GRSLIFS 407 G ++F+ Sbjct: 327 GSKIVFA 333 >gi|8101030|gb|AAF72523.1|AF248951_4 MdsD protein [Prevotella sp. RS2] Length = 1073 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 52/310 (16%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL------ 214 D Y ++ E G FN V + V G K L G +R+LT + D L Sbjct: 224 DAYYYLSEEDGTFN-----VYRASVDGTAKQQLTHFK--GNPVRFLTRANDGTLSFGYDG 276 Query: 215 --FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + R +KV+ + D +D +DR + G + S NGK Sbjct: 277 ELYTLREGEEPRKVSVSVTADR-------IDAELDRQLRYSGASEIAV-----SPNGKEI 324 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-------- 324 + D +Y + N T+++T+T S +S D IV+ ++R G Sbjct: 325 AFVMHGD----VYVTSVDYNTTKQITDTPEQERSIDFSSDGRSIVYAAERNGLWQIYQST 380 Query: 325 ----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 KE L+ + +++ + +K + F P++SP G +AF + A+ V Sbjct: 381 IKNKKEDLFTYATEIEEEQLVKSNKTS--FQPMYSPDGKSVAFLEDRTRLCAVDVKSHKV 438 Query: 381 SQ----ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINT 433 Q + + Q +WSP R L+ S G ++ L D G + N+ Sbjct: 439 RQLMDGKYMYSYSDGDQWFSWSPDSRWLLASYIGTGGWNNRDIALVPADGKGEIRNITNS 498 Query: 434 PAYASDPQWV 443 ++ +WV Sbjct: 499 GYNDTNGKWV 508 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 22/179 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + T++LT + +SPDS I F S REG +++M G R++ Sbjct: 45 DIWTVPVAGGQTKQLTTHSAYDSYPVWSPDSKNIAFVSTREGSRDVWIMPREGGAPHRLT 104 Query: 343 Q-----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 D + F+ P I F +G I + +G + +L E + Sbjct: 105 TSSGSETPVAFLDNDHVLFESQVMPTAQSIFFA--NGNFPQIYSVSVNGGRPKLYSELT- 161 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL--------NGRNETLINTPAYASDPQW 442 L+AP+ + G L + +K D K ++ + +G+ L + DP W Sbjct: 162 LKAPSINSKGDVLYYDQKGSEDQWRKHHTSPITRDIWLLRDGKYRKLTSFAGEDRDPVW 220 >gi|54294320|ref|YP_126735.1| hypothetical protein lpl1385 [Legionella pneumophila str. Lens] gi|53754152|emb|CAH15625.1| hypothetical protein lpl1385 [Legionella pneumophila str. Lens] Length = 656 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 65/280 (23%) Query: 210 RDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIGNFR--SMILAPR 264 R Q + EP SP+ + VAY ++I + +D + F S P+ Sbjct: 32 RIQNISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPK 91 Query: 265 FSSNGK--RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS---YSPDSSQIVFE 319 +S NGK L K+ I+ +Q N +LT +I+ S +SPDS++I F Sbjct: 92 WSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLT---YIDGEVSDFTWSPDSNRIAFI 148 Query: 320 SDR---------------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + + +G++ LY+++ +++ Y P Sbjct: 149 AQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYL-P 207 Query: 353 VWSPQGDLIAFTKFSGE------KFAIGVMK-KDGSQERLLVE----------DSNLQAP 395 WSP G IAF G+ + I +++ K G++ER L DSNL Sbjct: 208 AWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFPGSDMNPDYDSNL--- 264 Query: 396 TWSPSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLI 431 +WSP + + R + + ++L ID+N ++E +I Sbjct: 265 SWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDERII 304 >gi|73670802|ref|YP_306817.1| hypothetical protein Mbar_A3364 [Methanosarcina barkeri str. Fusaro] gi|72397964|gb|AAZ72237.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 551 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 14/134 (10%) Query: 308 SYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SP+ +I+F S Q YV +GS+ K E + + W P G L+ Sbjct: 254 SLSPNRKKIMFAVGSSDSYNLQTYVSNIDGSNLKGNISYNENLWANESWQPNGSLL---- 309 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + +++ D + +RLL + N W P G+ ++F + G+KLYSID++G Sbjct: 310 LVNQNRNLYIVEGDENNKRLLYK-GNASESQWFPDGKKILFV-----ENGNKLYSIDIDG 363 Query: 426 RNETLINT--PAYA 437 N + I + P Y+ Sbjct: 364 TNLSFITSFGPTYS 377 >gi|299139377|ref|ZP_07032552.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] gi|298598646|gb|EFI54809.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] Length = 751 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 8/149 (5%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFT 364 S YSPD + F S R G ++++ ++ +++ E F P WSP G IAF+ Sbjct: 487 SPVYSPDGHSVAFVSTRSGWGEVWLYRTGSDAPVQLTHFHGEGLVFPPSWSPDGRSIAFS 546 Query: 365 --KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 K+ + + + + P +S G L FS +DG + +D Sbjct: 547 FRKYGATNLMVCDLASHSIRTLTTTRKRDFN-PVYSADGAYLFFSSNEDGTSSIWRMRVD 605 Query: 423 LNGRNETL----INTPAYASDPQWVGFMD 447 GR E L + + ++D +W+ F++ Sbjct: 606 GTGRPEPLFVEAVASFLPSADGRWLYFIE 634 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 26/289 (8%) Query: 174 NSRILFVSESVVSG----IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + R L +E V+G I+ S+ +R + S D + +FSP+ +A+ Sbjct: 310 DGRFLLTTEQPVAGNPMRIVLISVATGERTSVTSPPIGSSGD---IDAKFSPDGSWIAFR 366 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--DIYSV 287 D+ V + ++ A R+ + + +G+ L Q++E ++ + Sbjct: 367 RGGLGDLYMVSVKGEQVKPA-TRLTFDTDGVRGLAWIDHGRSILYGTQRNETTPYGLWRI 425 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL-YVMQSNGSDQKRISQDKE 346 + +T F I+ S SP + +VFE + E + + + G + DK Sbjct: 426 TRDGGTPQPVTPADFDAINPSISP-TGTLVFEHRQLITELIEQPLATGGGAHTPLPSDKT 484 Query: 347 ASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 S PV+SP G +AF GE + Q + + P+WSP GRS Sbjct: 485 DS--SPVYSPDGHSVAFVSTRSGWGEVWLYRTGSDAPVQLTHFHGEGLVFPPSWSPDGRS 542 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRN-ETLINT------PAYASDPQWVGF 445 + FS +K G T L DL + TL T P Y++D ++ F Sbjct: 543 IAFSFRKYGAT--NLMVCDLASHSIRTLTTTRKRDFNPVYSADGAYLFF 589 >gi|319957282|ref|YP_004168545.1| translocation protein tolb [Nitratifractor salsuginis DSM 16511] gi|319419686|gb|ADV46796.1| translocation protein TolB [Nitratifractor salsuginis DSM 16511] Length = 414 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 80/381 (20%), Positives = 142/381 (37%), Gaps = 70/381 (18%) Query: 61 LGGKVSEVVSKDLQRSDVF---NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 LG K E+ + DL+ + + L SF I NPD L A + I Sbjct: 44 LGRKSYEIFTADLKITGHYRPDGLYHDGSFNGPILNPD----------LRAMEYLLKYRI 93 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDF-NS 175 E + + ++ ++ D + +K+ S A + + H D+ ++ D+ N Sbjct: 94 SESGNGVSLDVKVLKGGDSSLVFERKYSIGSQARYPFLIHRAVTDLNAAMGFTPVDWLNR 153 Query: 176 RILFV-------SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 +LF SE V++ + + R G NI P + +Q+ Y Sbjct: 154 YVLFARYTGRRESEVVLADYTFTYIKPIIRGGLNIF------------PVWGDAKQRTIY 201 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T + +Y +D + RI + + M++ S +GKR L+++ DIY + Sbjct: 202 YTDYSGKLPTLYRLDLTTGQR-TRILDSQGMLVCSDVSRDGKRLLLTMAPSGQPDIYEYN 260 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-------------QLYVMQSNG 335 + + +LT I++ Y+ +VF S+R G QL SN Sbjct: 261 VATGEKRQLTTYSGIDVGGKYADKERSMVFVSNRLGYANIFKKPLAGGPITQLVFHGSNN 320 Query: 336 S-----DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 D K + KE S F G+ F + + DG R L Sbjct: 321 DSCDAFDNKVVYSSKEKSSF-----------------GKAFNLYLTTTDGDYTRPLTSGG 363 Query: 391 NLQAPTWSPSGRSLIFSRKKD 411 Q P +S G ++++ ++ + Sbjct: 364 INQFPRFSNDGNTVLYIKRSE 384 >gi|149276299|ref|ZP_01882443.1| hypothetical protein PBAL39_01227 [Pedobacter sp. BAL39] gi|149232819|gb|EDM38194.1| hypothetical protein PBAL39_01227 [Pedobacter sp. BAL39] Length = 1046 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 13/169 (7%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATER-----LTNTL-----FI 303 N +M +AP S +GK +KD +D++ D ++ R ++N+ F+ Sbjct: 281 NAGNMNVAPAISPDGKFLAFLSEKDLFGIDLFLADAKTGKILRKLSSQISNSHIDDFNFL 340 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++SPDS Q F +G+ QL V+ ++G R + A + + WS GD IA Sbjct: 341 ESAGAWSPDSKQFAFSIFSKGRNQLMVIDVASGKVVLRAAMGDVAQFGNLSWSTNGDDIA 400 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK 410 F+ + I Q + +D + AP++SP G LIFS + Sbjct: 401 FSGMVEGQSDIFSYNLKTKQVTQITDDIYSDYAPSYSPDGSKLIFSSDR 449 >gi|301058310|ref|ZP_07199343.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2] gi|300447546|gb|EFK11278.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2] Length = 2881 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 14/182 (7%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIY--SVDLQSNATERLTNT 300 +R PK+ I AP S + ++ + D+A DIY ++D + RLT Sbjct: 112 SRTGALPKKRLQDLGRISAPSLSQHAEKMAFAATNDDAKGDIYLLTMDTPESTPWRLTGR 171 Query: 301 LFINISASYSPDSSQIVFESDREGKE--QLYVM----QSNGSDQKRISQDKEASYFDPVW 354 + + + SPD ++ F+ G+ QL VM Q++ D + +E ++ P Sbjct: 172 DSADGAPALSPDGRRVYFQRLLPGEALPQLSVMEIDSQTDRQDTPEVKVLREGAF--PAV 229 Query: 355 SPQGDLIAFTKFSGEKFA-IGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP GD +AF F+ + I V+ K G + + + P WS G+S+ FSR D Sbjct: 230 SPGGDRLAFVSFAEDPGGDIHVLDLKTGKAKAVTTGPAQDLYPAWSRDGKSVYFSR-IDA 288 Query: 413 DT 414 DT Sbjct: 289 DT 290 >gi|83814217|ref|YP_446141.1| acyl-peptide hydrolase, putative [Salinibacter ruber DSM 13855] gi|294508064|ref|YP_003572122.1| peptidase [Salinibacter ruber M8] gi|83755611|gb|ABC43724.1| acyl-peptide hydrolase, putative [Salinibacter ruber DSM 13855] gi|294344392|emb|CBH25170.1| putative peptidase [Salinibacter ruber M8] Length = 690 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 262 APRFSSNGKRALISVQK--DEAMD-----IYSVDLQSNATERLTNTLFINISASYSPDSS 314 AP ++ +G+ LIS + D +D +Y+VD+ S A LT + + SPD S Sbjct: 228 APTWTPDGETLLISANRHADRRLDPLNTEVYAVDVASGAVTALTTRQGPDGDVALSPDGS 287 Query: 315 QIVFES--DREGKEQ---LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 I + DRE Q LYVM +G++ + +++ + +P ++ G+ I F Sbjct: 288 TIAYTGFDDREQGYQVTKLYVMDRDGTNARLLTEGFDRDVQNPTFTADGEHIVFRYVDEG 347 Query: 370 KFAIGVMKKDGSQERLLVE 388 IG + DG + R++ E Sbjct: 348 STKIGRVALDGGR-RVVAE 365 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 58/287 (20%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL--MDT------ 244 L ++ DG+ R +T + + +PR+SP+ +VAY + D V++ MDT Sbjct: 76 LWAVNADGSGHRPIT-APETNASQPRWSPSGDRVAYVASTEGDGAEVFVRWMDTGQTARI 134 Query: 245 -RIDRAPKRIG--------NFRSMILA-----PRFSSNGKRALISVQKDEAMDIYSVDLQ 290 +++ +P + F + A R S + A + + D Y Sbjct: 135 TQLEESPSGLSWGPEGDRLAFSMFVPAEPEPFARMPSPPEGADWAERPDVIDQTYYRSDG 194 Query: 291 SNATERLTNTLFINISAS-------------------YSPDSSQIVFESDREGKEQLYVM 331 TER LF+ +SAS ++PD ++ ++R +L + Sbjct: 195 GGYTERGHTQLFV-VSASGGTPRQITTGPYDHGGAPTWTPDGETLLISANRHADRRLDPL 253 Query: 332 QSN------GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----IGVMKKDG 380 + S ++ D SP G IA+T F + + VM +DG Sbjct: 254 NTEVYAVDVASGAVTALTTRQGPDGDVALSPDGSTIAYTGFDDREQGYQVTKLYVMDRDG 313 Query: 381 SQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + RLL E D ++Q PT++ G ++F +G T K+ + L+G Sbjct: 314 TNARLLTEGFDRDVQNPTFTADGEHIVFRYVDEGST--KIGRVALDG 358 >gi|162449890|ref|YP_001612257.1| hypothetical protein sce1619 [Sorangium cellulosum 'So ce 56'] gi|161160472|emb|CAN91777.1| hypothetical protein sce1619 [Sorangium cellulosum 'So ce 56'] Length = 408 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 30/161 (18%) Query: 304 NISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDK---EASYF---DPVWS 355 N A +SPD ++VF+S R+G +Q Y++ + +R+S + YF P S Sbjct: 92 NAEAYWSPDGRKLVFQSTRDGNTCDQQYILDLESGEVRRVSNGQGKTTCGYFLFPAPATS 151 Query: 356 PQGD-LIAFTKFSGE-----------------KFAIGVMKKDGSQERLLVEDSNLQA-PT 396 Q L A T +GE +F I DGS+ R L++ A T Sbjct: 152 AQARVLFASTHAAGEACPPKPDHSQGYVWPLDEFDIYTANADGSELRPLIQGKGYDAEAT 211 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAY 436 + G L+F+ +DGD +LY+ L+G + + + +TP Y Sbjct: 212 VAFDGSRLVFTSTRDGDI--ELYTAKLDGSDVKRITSTPGY 250 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 19/145 (13%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY+ + + L + A+ + D S++VF S R+G +LY + +GSD KRI Sbjct: 185 FDIYTANADGSELRPLIQGKGYDAEATVAFDGSRLVFTSTRDGDIELYTAKLDGSDVKRI 244 Query: 342 SQDK---EASYFDP-----VW---SPQGD-------LIAFTKFSGEKFAIGVMKKDGSQE 383 + ++F P VW P G L+A I V DG Sbjct: 245 TSTPGYDGGAFFSPDATKLVWRASRPTGPALDDYRALLAKGLVRPSALEIFVAGADGQNP 304 Query: 384 RLLVEDSNLQ-APTWSPSGRSLIFS 407 R + + AP + P R ++F+ Sbjct: 305 RPVTRNGRANFAPYFLPDSRRILFA 329 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 36/180 (20%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R + + +D +++Y+ L + +R+T+T + A +SPD++++V+ + R Sbjct: 215 DGSRLVFTSTRDGDIELYTAKLDGSDVKRITSTPGYDGGAFFSPDATKLVWRASRPTGPA 274 Query: 328 L-------------------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFS 367 L +V ++G + + ++++ A+ F P + P I F + FS Sbjct: 275 LDDYRALLAKGLVRPSALEIFVAGADGQNPRPVTRNGRAN-FAPYFLPDSRRILFASDFS 333 Query: 368 GEKFAIGVMK-------------KDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + A G+ DG ER+ + P +SP+G ++F+ + G Sbjct: 334 TPQGARGMPNFDLYLVDSDAPPAADGVPPVERVTFYEGFDSFPMFSPTGEHVVFASNRHG 393 >gi|312111892|ref|YP_003990208.1| WD40-like beta Propeller containing protein [Geobacillus sp. Y4.1MC1] gi|311216993|gb|ADP75597.1| WD40-like beta Propeller containing protein [Geobacillus sp. Y4.1MC1] Length = 669 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 293 ATERLTNTLFINISASYSPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKRISQDKEA 347 A E L F++ +SPD +++F + +RE + L+++ K+ + K Sbjct: 14 AAEDLFRIHFVS-DPQFSPDGKKVIFVQKTIDHEREYRSHLFLLSLADGSVKQWTFGKSK 72 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLI 405 F P WSP G IAF K I + DG + R L N ++ WSP+GR LI Sbjct: 73 DTF-PRWSPDGKTIAFLSNRSGKPQIWRLPADGGEARQLTFLKNGVRQLCWSPNGRFLI 130 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 263 PRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P+FS +GK+ + I +++ ++ + L + ++ T + +SPD I Sbjct: 27 PQFSPDGKKVIFVQKTIDHEREYRSHLFLLSLADGSVKQWTFGKSKDTFPRWSPDGKTIA 86 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 F S+R GK Q++ + ++G + ++++ K WSP G LIA T E+ Sbjct: 87 FLSNRSGKPQIWRLPADGGEARQLTFLKNGVR-QLCWSPNGRFLIALTSLGKEE 139 >gi|148655768|ref|YP_001275973.1| WD40 domain-containing protein [Roseiflexus sp. RS-1] gi|148567878|gb|ABQ90023.1| WD40 domain protein beta Propeller [Roseiflexus sp. RS-1] Length = 347 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 6/147 (4%) Query: 282 MDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVF--ESDREGKEQLYVMQSNGS 336 + ++++ Q RL +T + +++PD S IVF E G + + Sbjct: 171 LALFTIPAQPGGVRRLIYADDTGHVG-RVTHTPDGSAIVFTLEPAYAGGSSQIMRYDRTT 229 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 D + +DP +SP G +AF G++ I + G L +AP Sbjct: 230 GTVAPQPDVPSGSYDPAFSPDGRWLAFAGRDGDRTDIFAVPAAGGTIVRLTGLGTARAPA 289 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +SP GR + F G+TG L+ D+ Sbjct: 290 FSPDGRRIAFLAVAPGETGFDLWVADI 316 >gi|189464174|ref|ZP_03012959.1| hypothetical protein BACINT_00511 [Bacteroides intestinalis DSM 17393] gi|189437964|gb|EDV06949.1| hypothetical protein BACINT_00511 [Bacteroides intestinalis DSM 17393] Length = 1082 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 21/160 (13%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V + +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYRVPVTGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTKFSGEKF 371 +G ++Y + + G + +R+ S+D P W+P G I + + F Sbjct: 85 DGNTEVYTIPATGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGF 144 Query: 372 A---IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 A V ++ G E + + + ++SP G+ L ++R Sbjct: 145 AGKLYSVNQEGGMPEIIPLPEGGFC--SYSPDGKRLAYNR 182 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 41/203 (20%), Positives = 95/203 (46%), Gaps = 18/203 (8%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSP 311 I N + A S +G+R +++ + + ++++ T+ +T T + +A +S Sbjct: 310 IKNGAKYLTAASASPDGERVVVTARGE----VFNLPSTKGVTKNITRTPGAHERNAQWSS 365 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I + SD G+ +LY+ + + +++++ + WSP I +T + Sbjct: 366 DGKYIAYISDATGETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSKKIVYTD---RQN 422 Query: 372 AIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 I ++ Q +L++D Q T+SP + L ++R D + + +Y D+ G+ E Sbjct: 423 RINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEI-TVVYVYDIAGKKEY 481 Query: 430 LI-------NTPAYASDPQWVGF 445 + ++P +++D +++ F Sbjct: 482 PVTDKWYNSSSPVFSTDGKYLIF 504 >gi|295401287|ref|ZP_06811259.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976694|gb|EFG52300.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 675 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 293 ATERLTNTLFINISASYSPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKRISQDKEA 347 A E L F++ +SPD +++F + +RE + L+++ K+ + K Sbjct: 20 AAEDLFRIHFVS-DPQFSPDGKKVIFVQKTIDHEREYRSHLFLLSLADGSVKQWTFGKSK 78 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLI 405 F P WSP G IAF K I + DG + R L N ++ WSP+GR LI Sbjct: 79 DTF-PRWSPDGKTIAFLSNRSGKPQIWRLPADGGEARQLTFLKNGVRQLCWSPNGRFLI 136 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 263 PRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P+FS +GK+ + I +++ ++ + L + ++ T + +SPD I Sbjct: 33 PQFSPDGKKVIFVQKTIDHEREYRSHLFLLSLADGSVKQWTFGKSKDTFPRWSPDGKTIA 92 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 F S+R GK Q++ + ++G + ++++ K WSP G LIA T E+ Sbjct: 93 FLSNRSGKPQIWRLPADGGEARQLTFLKNGVR-QLCWSPNGRFLIALTSLGKEE 145 >gi|226226567|ref|YP_002760673.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] gi|226089758|dbj|BAH38203.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] Length = 685 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 61/247 (24%) Query: 216 EPRFSPNQQKVAY------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 +P +SP+ + VA+ T DD +++L+ A +++ + R + +S +G Sbjct: 95 QPTWSPDGKTVAFVASRGAGTGDDAPRAQIWLLPADGGEA-RQLSSLRDGVSGYVWSPDG 153 Query: 270 KRALISVQKDEAMD----------------------IYSVDLQSNATERLTNTLF-INIS 306 + ++ Q + + I+ VD+ + A R+T F +N Sbjct: 154 SKIAVTSQDSISREDDAKRRRRDDAQVYEGPSRLSHIWVVDVATGAATRITTGNFTVNGV 213 Query: 307 ASYSPDSSQIVFESD-----REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S+SPD +++ F++ R+ + YV+ RI+ + E P +SP G L+ Sbjct: 214 PSWSPDGARLAFQAGPTTLIRDERHDAYVVDVATKQLDRITSNGEVE-TTPQFSPDGKLL 272 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE---------------------DSNLQAPTWSPS 400 AFT E FA KDG R L D + A WSP Sbjct: 273 AFTVVPHE-FA---AHKDGIPPRTLRNGRVTTFDLATRTSTNHARPDFDVSAGALRWSPD 328 Query: 401 GRSLIFS 407 G+ L F+ Sbjct: 329 GKELWFT 335 >gi|121996956|ref|YP_001001743.1| peptidase S41 [Halorhodospira halophila SL1] gi|121588361|gb|ABM60941.1| peptidase S41 [Halorhodospira halophila SL1] Length = 1193 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK- 365 A SPD ++I F R G+ L V +G ++ + + +A+ D WSP G IA+T+ Sbjct: 533 ARPSPDGTRIAF---RRGRGDLVVQDLDGGGERTLVEGWDAT-IDWRWSPDGRHIAYTQN 588 Query: 366 ---FSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 FS F ++ DGS E + + N P WS GR L F + GD+ LY Sbjct: 589 DLDFSANVF---IVPADGSAEPVNITRHPRNDLNPHWSADGRVLTFISNRSGDS-YDLYR 644 Query: 421 IDLN 424 + L+ Sbjct: 645 VYLD 648 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 25/159 (15%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G++ + S D++ V + RLT ++ +++S D +VF S R Sbjct: 40 PSISPDGEKLVFSW----GGDLWRVPAEGGTATRLTGHRLDDLHSAWSGDGDTLVFSSLR 95 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFD-----PVWSPQGDLIAFTKFSGEKFA----- 372 +G L+ M+ +G+ +++ +Y D P + D FS + A Sbjct: 96 DGYLNLWRMRPDGTGLRQV------TYGDRFLRHPGFGVGRDGEPLVTFSAQLEADVYRD 149 Query: 373 ---IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 GV G +RL D+ P+ SP GR + F+R Sbjct: 150 QRPYGVAPGGGEPQRL--HDAFGSEPSTSPDGRYVAFTR 186 >gi|148508342|gb|ABQ76125.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [uncultured haloarchaeon] Length = 627 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDR 322 S +G+ ++ +D M++Y L+S+ TE++T+ +A SP+ ++ + E D Sbjct: 121 SEDGQTLIVGSTRDGQMNLYRHHLESSQTEKITSYNRATANAILSPECDRLAYSTNERDN 180 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 +YV ++GS+ + + + + PV W P + T + E IGV Sbjct: 181 FNNRDVYVAAADGSNPRNLDIGEIGAESTPVDWGPDNQQLLITDNTAEFDRIGVYDLKTH 240 Query: 382 QERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + L +D + A ++P G +I R ++ + +Y I+ N E Sbjct: 241 ELKWLGDDQREESAVAFTPDGNRVIGIRVREAVSVPVVYDIESNEATE 288 >gi|116619729|ref|YP_821885.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222891|gb|ABJ81600.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 335 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 237 LRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQS 291 +++ LM + D R I NF AP F+ +GK+ L + K E ++Y +++ Sbjct: 228 MKMELMVSNADGTSARQITNFGCASFAPTFAPDGKKILFASNKAECDSRKFELYLINVDG 287 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 E++TN +SPD +VF +D++ KE+ Sbjct: 288 TGLEQVTNFGGFTSFPEFSPDGKTLVFCTDKDAKER 323 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 23/185 (12%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 DI+ + +RLTNT + A+ + ++ IV+ S G L+ M+ +GS +K+ Sbjct: 121 GYDIFEANDIGEIEKRLTNTPGYDAEATVNWKTNNIVYTSVASGDLDLWTMKPDGSAKKQ 180 Query: 341 ISQDK---EASYFDP-----VWS---PQGD--------LIAFTKFSGEKFAIGVMKKDGS 381 I+++ + F VW P+ D L+A + K + V DG+ Sbjct: 181 ITKNPGYDGGAVFSRDGKQLVWRAGYPKNDADMKRYKELLAENLTAPMKMELMVSNADGT 240 Query: 382 QERLLVEDSNLQ-APTWSPSGRSLIF-SRKKDGDTGS-KLYSIDLNGRN-ETLINTPAYA 437 R + APT++P G+ ++F S K + D+ +LY I+++G E + N + Sbjct: 241 SARQITNFGCASFAPTFAPDGKKILFASNKAECDSRKFELYLINVDGTGLEQVTNFGGFT 300 Query: 438 SDPQW 442 S P++ Sbjct: 301 SFPEF 305 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 26/155 (16%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----------------- 324 +D++++ +A +++T + A +S D Q+V+ + Sbjct: 166 LDLWTMKPDGSAKKQITKNPGYDGGAVFSRDGKQLVWRAGYPKNDADMKRYKELLAENLT 225 Query: 325 ---KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----KFAIGVMK 377 K +L V ++G+ ++I+ AS F P ++P G I F E KF + ++ Sbjct: 226 APMKMELMVSNADGTSARQITNFGCAS-FAPTFAPDGKKILFASNKAECDSRKFELYLIN 284 Query: 378 KDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKD 411 DG+ + + P +SP G++L+F KD Sbjct: 285 VDGTGLEQVTNFGGFTSFPEFSPDGKTLVFCTDKD 319 >gi|255531702|ref|YP_003092074.1| amidohydrolase [Pedobacter heparinus DSM 2366] gi|255344686|gb|ACU04012.1| amidohydrolase [Pedobacter heparinus DSM 2366] Length = 1052 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 19/140 (13%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SA SP+ Q+VF + ++Y+M G + RI + S F P WS G I F Sbjct: 327 SACASPEGRQLVFSA----LNRIYIMDLPGG-KPRILVKQPFSQFQPAWSADGQWITFVS 381 Query: 366 FSGEKFA-IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRK------------KD 411 +S +F + + K+G + + + P WSP G+S+ ++ +D Sbjct: 382 WSDAEFGQVWKVDKNGDSLTQISHKAGVYHYPNWSPDGKSIAVTKGRKVWQGKPMLGDRD 441 Query: 412 GDTGSKLYSIDLNGRNETLI 431 G +L +++L N+ +I Sbjct: 442 GPGIGQLITLELQNGNQKVI 461 >gi|239617551|ref|YP_002940873.1| peptidase S9 prolyl oligopeptidase active site domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506382|gb|ACR79869.1| peptidase S9 prolyl oligopeptidase active site domain protein [Kosmotoga olearia TBF 19.5.1] Length = 605 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I+ SS+G++ L S + + + +DL++ +LT++ Y P+ + +FE Sbjct: 19 IIGTALSSDGRKILFSSDESGIFNAHEIDLETGKASKLTDSQDSVFIVGYLPEGNGFLFE 78 Query: 320 SDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGV 375 D G E +Y+ ++G ++K ++ D++A WS G F K + F I Sbjct: 79 KDNGGNEISHIYLKDADG-NEKDLTPDEKAKAMFHSWSDDGKGFYFLSNKRDPKYFDIYY 137 Query: 376 MKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSR 408 M + L++E++ P SP+GR + S+ Sbjct: 138 MDIKSLEADLILENNEGFNPGPVSPNGRFIALSK 171 >gi|254525121|ref|ZP_05137176.1| putative regulatory protein [Stenotrophomonas sp. SKA14] gi|219722712|gb|EED41237.1| putative regulatory protein [Stenotrophomonas sp. SKA14] Length = 775 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 10/154 (6%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 APR+S +GK L+ V+ + D++ + E+LTN ++ D IVF Sbjct: 369 APRYSPDGK-WLVFVRNPQMGDLWRMPASGGVPEQLTNEAAEQRGWAWVDDGRTIVFGRR 427 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVW---SPQGDLIAFTKFSGEKFAIGVMKK 378 + + +LY + ++R +D A D W S G ++AF + V Sbjct: 428 VDSEVRLYYLDV----ERRTLRD--AGLDDAQWPAVSRHGGVLAFVHRRAQFGVFKVPTD 481 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 GS +RL P +P GR L+F+ + G Sbjct: 482 GGSAQRLFASSGRDGQPMAAPDGRQLVFTSDRSG 515 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 17/167 (10%) Query: 297 LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQS-NGSDQKRISQDKEASYFDP 352 +T T + SPD SQ+ +E D +G + V S N ++ ++ AS P Sbjct: 216 ITATSGFETYPTLSPDGSQVAYEGANEDGKGGGAIKVQTSGNAPARQLLAPPVGASDRFP 275 Query: 353 VWSPQGDLIAFTKFSGE---KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 WSP G IAF +FS E + I ++ + + L + W+P GR L+F Sbjct: 276 SWSPDGREIAFARFSAEGGCQVLIASATGGALRQATRCDGTELLSFDWTPDGRGLVFGSM 335 Query: 410 KDGDTGSKLYSIDLNGRNETLIN----------TPAYASDPQWVGFM 446 + +DL ++ P Y+ D +W+ F+ Sbjct: 336 VGRYAHRGIRVLDLASGQWNAVDYSVDADDFDYAPRYSPDGKWLVFV 382 >gi|116624109|ref|YP_826265.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227271|gb|ABJ85980.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 880 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 27/200 (13%) Query: 216 EPRFSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG---KR 271 EP SP+ +++A+ + +D D++ + L T+ ++++ R +G Sbjct: 584 EPAVSPDGRRIAFTSGAEDTDLIEIALDGTKT----------KTLLATSRPEYSGAWSPS 633 Query: 272 ALISVQKDEAMDIYSVDLQSNAT------ERLTNTLFINIS-ASYSPDSSQIVFESDREG 324 L V A D ++ ++S A E + ++++S YSPD +I + R G Sbjct: 634 GLQYVYVTSAPDGPAIWMRSLAEGWARPFEEGSAEGYLDLSQPRYSPDGQRIAYV--RTG 691 Query: 325 -KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + +YV + G + ++ A P WSP G+ IA+T+F G+ + I G + Sbjct: 692 ARHAVYVSSTAGGPAVPLERES-ADQHTPAWSPDGNWIAYTRFVGQNWEITKAPSGGGGQ 750 Query: 384 --RLLVEDSNLQAPTWSPSG 401 RL + + WSP+G Sbjct: 751 PVRLGIGGDSSGWMEWSPTG 770 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 10/152 (6%) Query: 263 PRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P S +G+R A S +D D+ + L T+ L T S ++SP Q V+ + Sbjct: 585 PAVSPDGRRIAFTSGAED--TDLIEIALDGTKTKTLLATSRPEYSGAWSPSGLQYVYVTS 642 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEA-SYFD---PVWSPQGDLIAFTKFSGEKFAIGVMK 377 ++ M+S R ++ A Y D P +SP G IA+ + +G + A+ V Sbjct: 643 APDGPAIW-MRSLAEGWARPFEEGSAEGYLDLSQPRYSPDGQRIAYVR-TGARHAVYVSS 700 Query: 378 KDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSR 408 G L E ++ P WSP G + ++R Sbjct: 701 TAGGPAVPLERESADQHTPAWSPDGNWIAYTR 732 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 27/204 (13%) Query: 258 SMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 +M+ AP +G+R+++S++ +Y++D + A + LT + SPD + Sbjct: 538 TMVWAP----DGRRSILSMEPAPGSWAHLYAIDTVTAALQPLTGGTGEEREPAVSPDGRR 593 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I F S E + L + +G+ K + Y WSP G + + + AI + Sbjct: 594 IAFTSGAEDTD-LIEIALDGTKTKTLLATSRPEYSG-AWSPSGLQYVYVTSAPDGPAIWM 651 Query: 376 MKKDGSQERLLVEDS-----NLQAPTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNG--- 425 R E S +L P +SP G+ + + R TG++ +Y G Sbjct: 652 RSLAEGWARPFEEGSAEGYLDLSQPRYSPDGQRIAYVR-----TGARHAVYVSSTAGGPA 706 Query: 426 ----RNETLINTPAYASDPQWVGF 445 R +TPA++ D W+ + Sbjct: 707 VPLERESADQHTPAWSPDGNWIAY 730 >gi|149370551|ref|ZP_01890240.1| WD40-like repeat/amidohydrolase domain protein [unidentified eubacterium SCB49] gi|149356102|gb|EDM44659.1| WD40-like repeat/amidohydrolase domain protein [unidentified eubacterium SCB49] Length = 1089 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 21/179 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY++ + + + + + +SPD I F SD G + ++ M ++G + +++ Sbjct: 69 DIYTMPITGGKAKAIRTGIAFEVQPRFSPDGKHISFTSDAGGGDNIWTMDASGDNATQVT 128 Query: 343 QDKEASYFDPVWSPQGD-LIAFTKF-SGEKFAIGVM----KKDGSQERLLVEDSNLQ--- 393 ++ + VW G+ LIA F SG G + K GS +L ++ Q Sbjct: 129 KENFRLLNNAVWMADGNYLIARKHFSSGRSLGAGELWQYHKTGGSGIQLTARKNDQQDVG 188 Query: 394 APTWSPSGRSLIFSR--------KKDGDTGSKLYSI---DL-NGRNETLINTPAYASDP 440 P S G+ + +S + + D S++Y I DL G+ ET+ P A+ P Sbjct: 189 EPFVSADGKYVYYSEDMYPGGFFQYNKDPNSQIYVIKRYDLETGKIETITGGPGGAARP 247 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 33/231 (14%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D+ + D+ IDR R I P +GK + + IY +L + Sbjct: 341 DLAQTVKTDSPIDRTTFTSKVIRDAITTP----DGKTLVFNALGK----IYKKELPNGTP 392 Query: 295 ERLTNTLFINISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 RLT S +P+ + IV+ + D E K +Y + NG ++++++K Y P Sbjct: 393 TRLTTATDFEYEPSLAPNGTDIVYVTWNDIE-KGAIYKLNLNGGTPQKLTKEK-GIYRTP 450 Query: 353 VWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +S G I F K G + I +M DG+ E L ++N + P ++ S Sbjct: 451 SYSNDGKHIVFKKEKGNSDQGNSFTKNAGIYIMTADGTSEIKL--NANGEYPRFNED-DS 507 Query: 404 LIFSRKKD---GDTGSKLYSIDLNGRNETLINTPAYAS------DPQWVGF 445 IF + G+ KL S++L G +E YA+ D +WV F Sbjct: 508 RIFLQTGGTYFGNLTKKLISVNLKGNDEREHLISKYANRIVPSPDNKWVAF 558 Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 24/175 (13%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISAS 308 P R+ P + NG + D E IY ++L ++LT I + S Sbjct: 392 PTRLTTATDFEYEPSLAPNGTDIVYVTWNDIEKGAIYKLNLNGGTPQKLTKEKGIYRTPS 451 Query: 309 YSPDSSQIVFESDREGKEQ---------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 YS D IVF+ ++ +Q +Y+M ++G+ + +++ + E F+ + D Sbjct: 452 YSNDGKHIVFKKEKGNSDQGNSFTKNAGIYIMTADGTSEIKLNANGEYPRFN-----EDD 506 Query: 360 LIAFTKFSGEKFA------IGV-MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 F + G F I V +K + +E L+ + +N P SP + + FS Sbjct: 507 SRIFLQTGGTYFGNLTKKLISVNLKGNDEREHLISKYANRIVP--SPDNKWVAFS 559 >gi|159900681|ref|YP_001546928.1| hypothetical protein Haur_4168 [Herpetosiphon aurantiacus ATCC 23779] gi|159893720|gb|ABX06800.1| hypothetical protein Haur_4168 [Herpetosiphon aurantiacus ATCC 23779] Length = 463 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 241 LMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 L T D+AP +G ++I AP +S +GK +++ ++ +D+Y+VD+ + +RLTN Sbjct: 140 LPTTASDQAPA-LGRKSALIDQAPVWSHDGKTIMLASAHEQQVDLYAVDVATGTAQRLTN 198 Query: 300 TLFINISASYSPDSSQIVFES 320 T + ++ S D S + F S Sbjct: 199 TPDLEVNLELSADGSHLAFAS 219 >gi|157960820|ref|YP_001500854.1| winged helix family two component response transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845820|gb|ABV86319.1| putative two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 715 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 15/219 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTR-IDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P SP+ + + Y + +YL D + PKR+ + +S + +S +G Sbjct: 190 PAISPDGRWLVYGSRGSNRYASLYLKDLQNPAETPKRLTSTKSAEIRAVWSPDGSALYYG 249 Query: 276 VQ--KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQLYVM 331 + ++ + ++L SN +L + + +PD S++V+ ++D LY + Sbjct: 250 SEYRSEDKCYLTKLNLDSNEALKLGECYTYSSAIDIAPDGSRLVYIWDADEGFGSGLYEL 309 Query: 332 QSNGSDQ--KRISQDKEASYFD--PVWSPQGDLIA----FTKFSGEKFAIGVMKKDGSQE 383 N +Q KR+S ++ SY D +SP G +A F S + F + + G ++ Sbjct: 310 TLNRDEQPPKRLSCTEDCSYRDRDAAFSPDGSWLAVARRFGNISEDIFLLHT--ETGEEQ 367 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 RL +++ +W LIFS + G + ID Sbjct: 368 RLTFGLEDIRGLSWHQDSERLIFSTENSGVRNGYIVGID 406 >gi|329955036|ref|ZP_08296017.1| peptidase, S9A/B/C family, catalytic domain protein [Bacteroides clarus YIT 12056] gi|328526326|gb|EGF53341.1| peptidase, S9A/B/C family, catalytic domain protein [Bacteroides clarus YIT 12056] Length = 736 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 8/108 (7%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S + SPD QI + + + +L+VM ++GS+ K+I++D P W G Sbjct: 56 SVAVSPDEKQIAYSVAYYSVPENKSNNELFVMNADGSNNKQITRDNWQES-QPAWIKDGK 114 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 IAF + M DG++ + L + D +++ +SP G+ L+F Sbjct: 115 KIAFLCNESGSSQVWEMNPDGTERKQLTQYDGDIEGFAFSPDGKKLLF 162 >gi|261419180|ref|YP_003252862.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. Y412MC61] gi|319765997|ref|YP_004131498.1| WD40-like beta Propeller containing protein [Geobacillus sp. Y412MC52] gi|261375637|gb|ACX78380.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. Y412MC61] gi|317110863|gb|ADU93355.1| WD40-like beta Propeller containing protein [Geobacillus sp. Y412MC52] Length = 673 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS 367 +SPD I F SDR G+ QL+++ +NG + ++++ K D VWSP G LIA T Sbjct: 77 FSPDGQTIAFLSDRSGRTQLWLLPANGGEARQLTFFKNGVR-DYVWSPDGTFLIALTTLG 135 Query: 368 GEK 370 E+ Sbjct: 136 DEE 138 >gi|220904131|ref|YP_002479443.1| WD40 domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868430|gb|ACL48765.1| WD40 domain protein beta Propeller [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 439 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 68/353 (19%), Positives = 157/353 (44%), Gaps = 27/353 (7%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLR-VEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHT 157 F+ + G+ ++VT EG R V+ R ++ ++ GK++ A ++A Sbjct: 96 FKRFQLAGSDIVVT-TFWPEGDSGTRPVQIRAFETNTGGRLFGKEYPKVNARDLPEVADR 154 Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 D+ +++TG F S + F+ ++ G + +++ ++ G ++R +T + + P Sbjct: 155 FCADLLEALTGNGAFFRSTLAFIKKN---GKMDSNVWLVKPTGRDLRQITNMPGESM-SP 210 Query: 218 RFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFR---SMILAPRFSSNGKRAL 273 +SP+ + V + D + L V+ DR+ ++ R ++++ P F + K A Sbjct: 211 AWSPDGRFVVFTQIDPKSHALGVW------DRSTGKVQRIRFPGNVVIGPAFMPDNKVA- 263 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +++ + I+ ++ L IN+S ++ +++ F S R G Q+++ Sbjct: 264 VALSNGKYPVIFQLNHVFQKERVLEQNDSINVSPTFDSTGTKMAFTSSRLGGPQIFLKDL 323 Query: 334 NGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDS 390 R+S K +Y + SP G L+ +++ + G + + M G++ ++ Sbjct: 324 GSGSVTRVS--KNGTYNSEANLSPDGTLVVYSRMTEYGHRIFVQDMLT-GTERQISFGPG 380 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD-PQW 442 + + P++ + F+ + G G +Y +G + + T S P+W Sbjct: 381 SDEQPSFCADSYFIAFTSSRGG--GRGIYLTTRHGGDAKRVPTGGGDSSFPRW 431 >gi|224537071|ref|ZP_03677610.1| hypothetical protein BACCELL_01948 [Bacteroides cellulosilyticus DSM 14838] gi|224521298|gb|EEF90403.1| hypothetical protein BACCELL_01948 [Bacteroides cellulosilyticus DSM 14838] Length = 1082 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 21/160 (13%) Query: 264 RF-SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 RF ++NG + S A D+Y V + +RLT+ + + +SPD I F Sbjct: 29 RFPATNGNEIVFSY----AGDLYRVPVTGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQY 84 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP-----VWSPQGDLIAFTKFSGEKF 371 +G ++Y + + G + +R+ S+D P W+P G I + + F Sbjct: 85 DGNTEVYTIPAAGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGF 144 Query: 372 A---IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 A V ++ G E + + + ++SP G+ L ++R Sbjct: 145 AGKLYSVNQEGGMPEIIPLPEGGFC--SYSPDGKRLAYNR 182 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 42/203 (20%), Positives = 95/203 (46%), Gaps = 18/203 (8%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSP 311 I N + A S +G+R +++ + + ++++ T+ +T T + A +SP Sbjct: 310 IKNGAKYLTAASASPDGERVVVTARGE----VFNLPSTKGVTKNITRTPGAHERDAQWSP 365 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I + SD G+ +LY+ + + +++++ + WSP I +T + Sbjct: 366 DGKCIAYISDATGETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSKKIVYTD---RQN 422 Query: 372 AIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 I ++ Q +L++D Q T+SP + L ++R D + + +Y D+ G+ E Sbjct: 423 RINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEI-TVVYVYDIAGKKEY 481 Query: 430 LI-------NTPAYASDPQWVGF 445 + ++P +++D +++ F Sbjct: 482 PVTDKWYNSSSPVFSTDGKYLIF 504 >gi|120611748|ref|YP_971426.1| peptidase S9 prolyl oligopeptidase [Acidovorax citrulli AAC00-1] gi|120590212|gb|ABM33652.1| peptidase S9, prolyl oligopeptidase active site domain protein [Acidovorax citrulli AAC00-1] Length = 661 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 21/225 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR--ALI 274 PR+SP+ ++VA+ + +V+++ A +++G L+ +S +G L Sbjct: 70 PRWSPDGKQVAFISMRTGSS-QVFVIARHGGEA-RQVGALDGTALSAEWSPDGCSLAVLC 127 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQS 333 +V D ++ +A T I Y D V G+E L+V++ Sbjct: 128 TVAVDP--ELRGRRPGPDAPPPRTGGPRIVWRLPYKSDGLGYVL-----GQETHLFVLRV 180 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKFAIGVMKKDGSQERLLVE 388 + +R++ D + WSP G IA + G + + ++ DG R L + Sbjct: 181 SDGQCRRLT-DGAFNVRAAAWSPDGRTIAMVRTRDSDTEGHRTDLWTLRADGGDARQLTD 239 Query: 389 D-SNLQAPTWSPSGRSLIFSRKKD-GDTGSKLYSIDL-NGRNETL 430 + + +P WSP GR+++ S +D GD +L+ D GR E L Sbjct: 240 GLAQVLSPVWSPDGRTIVVSGSRDEGDALVRLWQCDAEGGRVEPL 284 >gi|307354079|ref|YP_003895130.1| hypothetical protein Mpet_1941 [Methanoplanus petrolearius DSM 11571] gi|307157312|gb|ADN36692.1| hypothetical protein Mpet_1941 [Methanoplanus petrolearius DSM 11571] Length = 447 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 21/151 (13%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSG 368 P + ++E EG L +M S+GSD++ +S S P W+PQG LI +++ Sbjct: 76 PCNCTSLWEGCVEGPALLNIMNSDGSDRRILSNLTVLSV--PSWNPQGTHLLILGGEYTD 133 Query: 369 -----EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK------ 417 E ++ KDGS ++ L DS L +WSP G ++ + K G K Sbjct: 134 SFQNPENKGYWLVAKDGSNQQFLFNDSVLSY-SWSPDGSNIAYLSKVKGICLEKNVDGTC 192 Query: 418 -----LYSIDLNGRNETLINTPAYASDPQWV 443 Y + + + +L SDPQW+ Sbjct: 193 NYEQNAYVLKIFNLSTSLSRELNQVSDPQWI 223 >gi|54297561|ref|YP_123930.1| hypothetical protein lpp1611 [Legionella pneumophila str. Paris] gi|53751346|emb|CAH12762.1| hypothetical protein lpp1611 [Legionella pneumophila str. Paris] Length = 656 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 59/277 (21%) Query: 210 RDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIGNFR--SMILAPR 264 R Q + EP SP+ + VAY ++I + +D + F S P+ Sbjct: 32 RIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPK 91 Query: 265 FSSNGK--RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +S NGK L K+ I+ +Q N +LT+ ++SPDS++I F + + Sbjct: 92 WSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQK 151 Query: 323 ---------------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +G++ LY+++ +++ Y P WS Sbjct: 152 SDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYL-PAWS 210 Query: 356 PQGDLIAFTKFSGE------KFAIGVMK-KDGSQERLLVE----------DSNLQAPTWS 398 P G IAF G+ + I +++ K G++E L DSNL +WS Sbjct: 211 PDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHFPGSDMNPDYDSNL---SWS 267 Query: 399 PSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLI 431 P + + R + + ++L ID+N ++E +I Sbjct: 268 PDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKII 304 >gi|300114275|ref|YP_003760850.1| WD40 domain-containing protein [Nitrosococcus watsonii C-113] gi|299540212|gb|ADJ28529.1| WD40 domain protein beta Propeller [Nitrosococcus watsonii C-113] Length = 366 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 46/231 (19%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DG N+R ++ + + +P+ Q + YA+ +L D+ P + Sbjct: 95 MDADGKNVRQVSSGKG-VTTCSFIAPDDQAIIYAS--------THLAG---DQCPPK--- 139 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P +S L E DI+ D + RLT+T + YSP + Sbjct: 140 -------PDYSQGYVWPLY-----EGYDIFRADPEGGNRVRLTDTPGYDAEGVYSPQGDK 187 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDK---EASYF--DPVW------SPQGDLIAFT 364 I+F S R G +L++M +GS+ ++++ ++F D W P+G +A Sbjct: 188 IIFTSARTGDLELFMMSPDGSEMEQLTDQPGYDGGAFFSRDGQWIVWRASRPEGKALADY 247 Query: 365 K-------FSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFS 407 + + I +M + + L ++ P W P G+ +IFS Sbjct: 248 QSLLKQGLIRPGRLEIFIMNLEERKPIQLTDNGAANFGPYWHPDGKHIIFS 298 >gi|265764805|ref|ZP_06093080.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263254189|gb|EEZ25623.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1090 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 18/140 (12%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ + SY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVSAGGGTAIQLTT--QPSYECTPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F I VM G + L S+ + P+ ++P G+ ++FS + S +L Sbjct: 85 GNFDIFVMPATGGTAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTEL 144 Query: 419 YSIDLN-GRNETLINTPAYA 437 Y + +N GR E ++ TPA A Sbjct: 145 YKVPVNGGRTEQVLGTPAEA 164 >gi|256374817|ref|YP_003098477.1| peptidase S41 [Actinosynnema mirum DSM 43827] gi|255919120|gb|ACU34631.1| peptidase S41 [Actinosynnema mirum DSM 43827] Length = 1069 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 15/176 (8%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ L R++ + +SPD + + + S R+G +++ G +R++ Sbjct: 35 DVWLAPLDGGRAWRVSADQVRASTPRFSPDGAHLAWTSHRDGAPEVHAAPVLGGPARRLT 94 Query: 343 QDKEASYFDPVWSPQGDLIAFT---KFSGEK-FAIGVMKKDGSQERL-------LVEDSN 391 + + W+P G ++A + + +G + +A V G E+L + + Sbjct: 95 HWGDYTTGVRTWTPDGRVVAVSTTGQATGNREWAHAVPLDGGPSEKLPYGWVGGVAYGPD 154 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS---DPQWVG 444 Q T S +GR + ++ G T +KL+ +D+ G E P S P WVG Sbjct: 155 RQVLTSSAAGRDPAWWKRYRGGTAAKLW-VDVEGGGEFTRVLPELTSPLTSPMWVG 209 >gi|262198210|ref|YP_003269419.1| peptidase M28 [Haliangium ochraceum DSM 14365] gi|262081557|gb|ACY17526.1| peptidase M28 [Haliangium ochraceum DSM 14365] Length = 944 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 25/163 (15%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL---- 328 L + +D +++Y +D RLTNT + A +S D SQIV+ + R E L Sbjct: 196 LFTSDRDGDLELYRMDPNGENVVRLTNTPGYDGGAFFSQDCSQIVWRASRPQGEALADFQ 255 Query: 329 ---------------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFS---GE 369 YV ++G + ++I+ A+ F P + P G + F T + G Sbjct: 256 RLLGEGLVRPSLLEIYVADADGQNARQITY-LGAAAFAPYFHPSGKRVLFSTNYPNPRGR 314 Query: 370 KFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +F I + DG+ E++ + P +SP G L F+ ++ Sbjct: 315 EFDIWSVNTDGTGLEQITFSEGFDGFPMFSPDGTKLAFASNRN 357 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 21/164 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + LT + A+ I+F SDR+G +LY M NG + R++ Sbjct: 162 DIYRAKADGSELVNLTQRDGYDAEATVCAKDGTILFTSDRDGDLELYRMDPNGENVVRLT 221 Query: 343 QDK---EASYFDP-----VW---SPQGDLIA-FTKFSGEKFA------IGVMKKDGSQER 384 ++F VW PQG+ +A F + GE I V DG R Sbjct: 222 NTPGYDGGAFFSQDCSQIVWRASRPQGEALADFQRLLGEGLVRPSLLEIYVADADGQNAR 281 Query: 385 LLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSK--LYSIDLNG 425 + + AP + PSG+ ++FS G + ++S++ +G Sbjct: 282 QITYLGAAAFAPYFHPSGKRVLFSTNYPNPRGREFDIWSVNTDG 325 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ----KDEAMDIYSVDLQS 291 +L +Y+ D A ++I + AP F +GKR L S + DI+SV+ Sbjct: 267 LLEIYVADADGQNA-RQITYLGAAAFAPYFHPSGKRVLFSTNYPNPRGREFDIWSVNTDG 325 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDR 322 E++T + + +SPD +++ F S+R Sbjct: 326 TGLEQITFSEGFDGFPMFSPDGTKLAFASNR 356 >gi|60679676|ref|YP_209820.1| putative peptidase/protease family protein [Bacteroides fragilis NCTC 9343] gi|253564534|ref|ZP_04841991.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60491110|emb|CAH05858.1| putative peptidase/protease family protein [Bacteroides fragilis NCTC 9343] gi|251948310|gb|EES88592.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301161141|emb|CBW20679.1| putative peptidase/protease family protein [Bacteroides fragilis 638R] Length = 1090 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 18/140 (12%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD ++I F K +Y + + G +++ + SY P+WSP IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVSAGGGTAIQLTT--QPSYECTPIWSPDSKQIAFASDRN 84 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KL 418 F I VM G + L S+ + P+ ++P G+ ++FS + S +L Sbjct: 85 GNFDIFVMPATGGTAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTEL 144 Query: 419 YSIDLN-GRNETLINTPAYA 437 Y + +N GR E ++ TPA A Sbjct: 145 YKVPVNGGRTEQVLGTPAEA 164 >gi|145593151|ref|YP_001157448.1| peptidase S9B dipeptidylpeptidase IV subunit [Salinispora tropica CNB-440] gi|145302488|gb|ABP53070.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Salinispora tropica CNB-440] Length = 590 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 83/227 (36%), Gaps = 57/227 (25%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P ++ +G DE I D ++ L AS++PD +IV+ ++ Sbjct: 253 PTWTRDGNHLFFHRLVDEGAGIAVWDRRTRVVRDLVPAEHKPRYASFAPDGRRIVYGTEA 312 Query: 323 EGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------------- 364 G+ +L ++ G+ Q + EA++ P WSP G IA T Sbjct: 313 GGRSRLRILNLDTGTSQPLPA--GEAAF--PTWSPDGRTIACTVRPDPSSRWEIATVDVS 368 Query: 365 --------------------------------KFSGEKFAIGVMKKDGSQERL--LVEDS 390 + E F ++ D + R L EDS Sbjct: 369 SGQVQLWTTGRTDLRGLHAPVSFAPDGRRLVFRSETEPFEANLLVLDLNSGRFTNLTEDS 428 Query: 391 NL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 +AP++SP GRS+IF + GD Y IDL+ + + P Y Sbjct: 429 WWDEAPSFSPDGRSVIFMSTRGGDWTWGFYRIDLDSKEIVTVAGPDY 475 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 10/105 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRI---SQDKEASYFDPVWSPQGDLIA 362 + +PD ++ V S R G L+ S+G Q+ D EA WSP G + Sbjct: 33 GAIAPDGTRFVASSKRNGSVNLWFFDLSSGKWQQGTWGTGDDIEAQ-----WSPDGRQLT 87 Query: 363 FTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 FT G AI + + DG +L D + P+WSP G ++ F Sbjct: 88 FTSSRGGHKAIWLYRLSDGQVRQLTSADHEEEYPSWSPDGSTVAF 132 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + S++PD +V S G ++++ S ++ +++ D + + P P +AF++ Sbjct: 164 ACSWAPDGRWLVCHSYDTGAGAVWLLDSQTAEAIQVT-DGSSWDYKPTICPTRPAVAFSR 222 Query: 366 FSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + I V + DG+ L+V ++ + PTW+ G L F R D G ++ Sbjct: 223 SNEGRSVIWVQRLGDGTGGPLVVTGADDRWPTWTRDGNHLFFHRLVDEGAGIAVW 277 >gi|152990959|ref|YP_001356681.1| translocation protein TolB [Nitratiruptor sp. SB155-2] gi|151422820|dbj|BAF70324.1| Tol biopolymer transport system component TolB [Nitratiruptor sp. SB155-2] Length = 407 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M++ S +GK+ L+++ + DIY +DL RLT I+++ +Y D +IVF Sbjct: 222 MLVCSDVSKDGKKLLLTMAPNYQPDIYELDLTKKTLRRLTTYPGIDVNGNYVEDGRRIVF 281 Query: 319 ESDREGKEQLYVMQSNGSDQKRI 341 SDR G ++ + +R+ Sbjct: 282 VSDRLGNPTIFAKRIGSKAVERV 304 >gi|296107220|ref|YP_003618920.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidase [Legionella pneumophila 2300/99 Alcoy] gi|295649121|gb|ADG24968.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidase [Legionella pneumophila 2300/99 Alcoy] Length = 656 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 59/277 (21%) Query: 210 RDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIGNFR--SMILAPR 264 R Q + EP SP+ + VAY ++I + +D + F S P+ Sbjct: 32 RIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPK 91 Query: 265 FSSNGK--RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +S NGK L K+ I+ +Q N +LT+ ++SPDS++I F + + Sbjct: 92 WSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQK 151 Query: 323 ---------------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +G++ LY+++ +++ Y P WS Sbjct: 152 SDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYL-PAWS 210 Query: 356 PQGDLIAFTKFSGE------KFAIGVMK-KDGSQERLLVE----------DSNLQAPTWS 398 P G IAF G+ + I +++ K G++E L DSNL +WS Sbjct: 211 PDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHFPGSDMNPDYDSNL---SWS 267 Query: 399 PSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLI 431 P + + R + + ++L ID+N ++E +I Sbjct: 268 PDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKII 304 >gi|148359176|ref|YP_001250383.1| acylaminoacyl peptidase [Legionella pneumophila str. Corby] gi|148280949|gb|ABQ55037.1| acylaminoacyl peptidase [Legionella pneumophila str. Corby] Length = 656 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 59/277 (21%) Query: 210 RDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIGNFR--SMILAPR 264 R Q + EP SP+ + VAY ++I + +D + F S P+ Sbjct: 32 RIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPK 91 Query: 265 FSSNGK--RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +S NGK L K+ I+ +Q N +LT+ ++SPDS++I F + + Sbjct: 92 WSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQK 151 Query: 323 ---------------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +G++ LY+++ +++ Y P WS Sbjct: 152 SDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYL-PAWS 210 Query: 356 PQGDLIAFTKFSGE------KFAIGVMK-KDGSQERLLVE----------DSNLQAPTWS 398 P G IAF G+ + I +++ K G++E L DSNL +WS Sbjct: 211 PDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHFPGSDMNPDYDSNL---SWS 267 Query: 399 PSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLI 431 P + + R + + ++L ID+N ++E +I Sbjct: 268 PDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKII 304 >gi|323702980|ref|ZP_08114637.1| peptidase S9B dipeptidylpeptidase IV domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532111|gb|EGB21993.1| peptidase S9B dipeptidylpeptidase IV domain protein [Desulfotomaculum nigrificans DSM 574] Length = 464 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 21/150 (14%) Query: 306 SASYSPDSSQIVFESDREGKE---QLYV--MQSNGSDQKRISQDKEASYFDPVW------ 354 S ++SPD Q+ F G E QL V + S GS + + + P W Sbjct: 182 SPTWSPDGHQVAFVVGSHGVEEIQQLPVVNLTSGGSKFSNLKPKDNSQWAKPAWHYANLT 241 Query: 355 -SPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP GD +A+ K +GE + V G Q RL+ + P WSP G+ L+ ++ D Sbjct: 242 FSPGGDTLAYVVKRAGEPAEVWVKPITG-QARLVTQGD---YPAWSPDGKHLVV-QQPDK 296 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + LY +D+ + L+ P W Sbjct: 297 ENSYVLYLVDIKTGDTQLLGP---GERPTW 323 >gi|163849346|ref|YP_001637390.1| WD40 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222527342|ref|YP_002571813.1| WD40 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163670635|gb|ABY37001.1| WD40 domain protein beta Propeller [Chloroflexus aurantiacus J-10-fl] gi|222451221|gb|ACM55487.1| WD40 domain protein beta Propeller [Chloroflexus sp. Y-400-fl] Length = 620 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 N L+N + A SPD I F SDR+G ++YVM S+GS+ +R++ + A+ Sbjct: 512 NNIRNLSNNAANDRFARISPDGRTIAFASDRDGNWEIYVMNSDGSNVRRLTNNA-ATDDS 570 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMK-KDGS 381 P WS +AF F I ++ DG+ Sbjct: 571 PTWSLTNQQLAFASDRDGDFEIYILNVSDGA 601 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +G+ + +D +IY ++ + RLTN + S ++S + Q+ F SDR+ Sbjct: 528 RISPDGRTIAFASDRDGNWEIYVMNSDGSNVRRLTNNAATDDSPTWSLTNQQLAFASDRD 587 Query: 324 GKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWS 355 G ++Y++ S+G+ ++++Q+ + P+W+ Sbjct: 588 GDFEIYILNVSDGAIVQQVTQNTAQDRW-PLWA 619 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 306 SASYSPDSSQIVFESDREGKEQLY------------VMQSNGSDQKRISQDKEASYFDPV 353 S ++SPD + + ++ EG ++Y + ++ + +S + F + Sbjct: 470 SPTWSPDGRYLFWVTNCEGNFEIYRATIVFYYIDDLFASISLNNIRNLSNNAANDRFARI 529 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 SP G IAF + I VM DGS R L ++ +PTWS + + L F+ +DG Sbjct: 530 -SPDGRTIAFASDRDGNWEIYVMNSDGSNVRRLTNNAATDDSPTWSLTNQQLAFASDRDG 588 Query: 413 D 413 D Sbjct: 589 D 589 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 21/156 (13%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSN-----GSDQKRISQDKEASYFDPVWSPQGDL 360 +AS SPD + + F S+R+G QLY+ + N G + D+ + P WSP G Sbjct: 420 NASVSPDGTLLAFVSERQGIPQLYLRRLNVSPLRGYASPITAYDRPCNVESPTWSPDGRY 479 Query: 361 IAFTKFSGEKFAIGVMK-------------KDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + + F I + L +N + SP GR++ F+ Sbjct: 480 LFWVTNCEGNFEIYRATIVFYYIDDLFASISLNNIRNLSNNAANDRFARISPDGRTIAFA 539 Query: 408 RKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 +DG+ ++Y ++ +G N L N A P W Sbjct: 540 SDRDGNW--EIYVMNSDGSNVRRLTNNAATDDSPTW 573 >gi|317037459|ref|XP_001398515.2| hypothetical protein ANI_1_970164 [Aspergillus niger CBS 513.88] Length = 650 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEAS 348 SN L N + A +SPD IVF S+R G Q LY ++ NG+D + I+ Sbjct: 45 SNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTDLQPIATSPAVE 104 Query: 349 YFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVEDSNLQA----------PTW 397 + SP G L+AF G K I + D + + + P W Sbjct: 105 DAGAI-SPNGSLVAFAGTLGNYKSNIWIQNLDTGALWNVTNSTEVAGDYTLPDGHFRPAW 163 Query: 398 SPSGRSLIFSRKKD 411 SP G L+F+ ++ Sbjct: 164 SPDGEWLVFTSDRN 177 >gi|145593173|ref|YP_001157470.1| periplasmic component of the Tol biopolymer transport system-like protein [Salinispora tropica CNB-440] gi|145302510|gb|ABP53092.1| Periplasmic component of the Tol biopolymer transport system-like protein [Salinispora tropica CNB-440] Length = 590 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G R + S ++ +++++ ++ + + T +I A +SPDS+ + F S R G Sbjct: 36 ISPDGTRFVASSRRTGSLNLWFYEIATEQWHQGTRGAGDDIEAQWSPDSACLAFTSSRCG 95 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + + + RIS+ Y + P WSP G I F + + ++ G Sbjct: 96 HKAVWLYRLH---EARISRLTFGPYDEEYPNWSPDGSKITFVGGGWAQRQVYLVSATGGP 152 Query: 383 ERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + E A T+ P G LI DTG+ SI Sbjct: 153 PMPVTDEPGRTGACTYLPDGSGLICHSY---DTGASAVSI 189 >gi|134084093|emb|CAK43122.1| unnamed protein product [Aspergillus niger] Length = 675 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEAS 348 SN L N + A +SPD IVF S+R G Q LY ++ NG+D + I+ Sbjct: 70 SNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTDLQPIATSPAVE 129 Query: 349 YFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVEDSNLQA----------PTW 397 + SP G L+AF G K I + D + + + P W Sbjct: 130 DAGAI-SPNGSLVAFAGTLGNYKSNIWIQNLDTGALWNVTNSTEVAGDYTLPDGHFRPAW 188 Query: 398 SPSGRSLIFSRKKD 411 SP G L+F+ ++ Sbjct: 189 SPDGEWLVFTSDRN 202 >gi|297530850|ref|YP_003672125.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. C56-T3] gi|297254102|gb|ADI27548.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. C56-T3] Length = 673 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDL----QSNATERLTNTLFINISASYSPDSSQIVF 318 P ++ +G RA+ + + Y L + + T + ++ +SP I F Sbjct: 27 PHYAPDGTRAVFVEKSIDEEKQYRSHLWLWAADGSVRQWTFGRWRDMKPRFSPRGEMIAF 86 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 SDR G+ QL+++ +NG + ++++ K D VWSP G LIA T E+ Sbjct: 87 LSDRSGRTQLWLLPANGGEARQLTFFKNGVR-DYVWSPDGTFLIALTTLGDEE 138 >gi|262196482|ref|YP_003267691.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079829|gb|ACY15798.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1547 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 23/252 (9%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS ++ V DG + D + FSP+ +A A+ D+ +RV+ Sbjct: 1015 IVSASTDKTVRVWRTDGTGQALVLHGHDGAVTSASFSPDGAHIASASSDE--TIRVW--- 1069 Query: 244 TRIDRA--PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 R D A P + + + F +G + ++S D+ + ++ D N+ + Sbjct: 1070 -RADGAGQPVILSGHGETVWSVSFRPDGSQ-IVSASHDKTVRVWRADGTGNSRVLRGHDD 1127 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 F+ +SAS+SPD +QIV S + + V ++G+ + I + + + +SP+G I Sbjct: 1128 FV-MSASFSPDGTQIVSTSS---DKTVRVWPADGAGEPLILRGHDDVVWSASFSPEGTHI 1183 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 T S +K + + S E L + D + + ++SP G L+ D +++ Sbjct: 1184 --TSASSDK-TVRIWGPGDSDEPLALHGHDDAVMSASFSPDGTRLV---SASADKTVRVW 1237 Query: 420 SIDLNGRNETLI 431 D G NE LI Sbjct: 1238 GTD--GSNEPLI 1247 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D AP + ++ RFS G L+S D+ + ++ D + + +S Sbjct: 906 DIAPVVFTDHIEAVMTARFSPEGTH-LVSASADKTVRVWRADGTGQPVVLRGHEDAV-MS 963 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 AS+SPD + IV S + + V +++G+ Q + + EAS +SP G I Sbjct: 964 ASFSPDGAHIVSAS---VDKTVRVWRADGTGQPIVLRGHEASVMSASFSPDGARI--VSA 1018 Query: 367 SGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSG 401 S +K + V + DG+ + L++ D + + ++SP G Sbjct: 1019 STDK-TVRVWRTDGTGQALVLHGHDGAVTSASFSPDG 1054 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 18/230 (7%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS ++ V DG+N + D ++ FSP+ + A+ D +RV+ D Sbjct: 1225 LVSASADKTVRVWGTDGSNEPLILRGHDSVVISASFSPDGAHLVTASAD--KTVRVWRAD 1282 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + P + + RFS +G L++ D+ + ++ D E L Sbjct: 1283 GAGE--PLTLRGHDEAVWTARFSPDGTH-LVTASADQTVRVWKAD---GTGEPLVLRGHD 1336 Query: 304 NI--SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N+ SA YS D +Q+V S + + V Q++G+ + + + + + +SP G I Sbjct: 1337 NVVWSADYSRDGTQLVSAS---WDKTVRVWQADGTGEPLVLRGHDEAVMSASFSPDGTNI 1393 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRK 409 + + V K DG+ L++ + + ++S GR ++ + + Sbjct: 1394 VSASWDK---TVRVWKADGAGVPLILRGHGEAVLSASFSQDGRYIVSTSR 1440 >gi|325920630|ref|ZP_08182542.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas gardneri ATCC 19865] gi|325548886|gb|EGD19828.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas gardneri ATCC 19865] Length = 778 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 11/222 (4%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + I P +S +G+ Sbjct: 228 LTPSLSPDGAMVAYASLTSDRAGTSILVKTTNNAYPRVLDTPAAGISDRLPAWSPDGREI 287 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + + A E + +S S+SPD ++F S G + Sbjct: 288 AFSRQAPDGSCRIMIAAANGPAAAREVVRCDGADMLSFSWSPDGRGLLFGSMTGAHGAPR 347 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + + + FD P +SP G I F + + G+ ERL Sbjct: 348 IRRLDLETGQWQPLVYSAQPQDFDYAPRYSPDGHWIVFLRNPQLGDLWRIPATGGTAERL 407 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 ++++++ +W P G +IF R+ D + ++LY +DL R+ Sbjct: 408 THDNADIRGWSWLPDGSGVIFGRRVDSE--ARLYRLDLRDRS 447 >gi|239826379|ref|YP_002949003.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. WCH70] gi|239806672|gb|ACS23737.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. WCH70] Length = 670 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 8/123 (6%) Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKRISQ 343 L+ E L F+N +SPD +++F + +RE + L+++ + + Sbjct: 10 LRVITAEDLFRIRFVN-DPQFSPDGEKVIFVQKTIDDEREYRSHLFLLTLADGKVNQWTF 68 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGR 402 K F P WSP G IAF K I ++ DG + R L N ++ WSP GR Sbjct: 69 GKVKDAF-PRWSPDGKTIAFLSNRSGKTQIWLLPTDGGEARQLTALKNGVRHLRWSPDGR 127 Query: 403 SLI 405 L+ Sbjct: 128 FLV 130 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 7/111 (6%) Query: 263 PRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P+FS +G++ + I +++ ++ + L + T + +SPD I Sbjct: 27 PQFSPDGEKVIFVQKTIDDEREYRSHLFLLTLADGKVNQWTFGKVKDAFPRWSPDGKTIA 86 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS 367 F S+R GK Q++++ ++G + ++++ K WSP G L+A T Sbjct: 87 FLSNRSGKTQIWLLPTDGGEARQLTALKNGVR-HLRWSPDGRFLVALTSLG 136 >gi|329957533|ref|ZP_08298008.1| WD40-like protein [Bacteroides clarus YIT 12056] gi|328522410|gb|EGF49519.1| WD40-like protein [Bacteroides clarus YIT 12056] Length = 1089 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++I F K +Y + + G +++ +E+ PVWSP G IAF Sbjct: 31 SPDGTEIAFCY----KGDIYKVPAKGGTAIQLTT-QESYESTPVWSPDGKQIAFASDRYG 85 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS---------KLY 419 F + VM +G + L S + P+ ++P G+ ++FS S +LY Sbjct: 86 NFDVFVMPANGGTAQRLTTHSAGEIPSAFTPDGKYILFSAAIQDPAESALFPRSAMTELY 145 Query: 420 SIDL-NGRNETLINTPAYA 437 + + GR E ++ TPA A Sbjct: 146 KVPVTGGRTEQVLGTPAEA 164 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V + +LT + +SPD QI F SDR G ++VM +NG +R++ Sbjct: 44 DIYKVPAKGGTAIQLTTQESYESTPVWSPDGKQIAFASDRYGNFDVFVMPANGGTAQRLT 103 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 A ++P G I F+ Sbjct: 104 T-HSAGEIPSAFTPDGKYILFS 124 >gi|194359645|gb|ACF57670.1| EstC [Geobacillus thermoleovorans] Length = 673 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDL----QSNATERLTNTLFINISASYSPDSSQIVF 318 P ++ +G RA+ + + Y L + + T + ++ +SP I F Sbjct: 27 PHYAPDGTRAVFVEKSIDEEKQYRSHLWIWAADGSVRQWTFGRWRDMKPRFSPRGEMIAF 86 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 SDR G+ QL+++ +NG + ++++ K D VWSP G LIA T E+ Sbjct: 87 LSDRSGRTQLWLLPANGGEARQLTFFKNGVR-DYVWSPDGTFLIALTTLGDEE 138 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 12/105 (11%) Query: 309 YSPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLI 361 Y+PD ++ VF + +++ + L++ ++GS + Q + D P +SP+G++I Sbjct: 29 YAPDGTRAVFVEKSIDEEKQYRSHLWIWAADGS----VRQWTFGRWRDMKPRFSPRGEMI 84 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLI 405 AF + + ++ +G + R L N ++ WSP G LI Sbjct: 85 AFLSDRSGRTQLWLLPANGGEARQLTFFKNGVRDYVWSPDGTFLI 129 >gi|56419496|ref|YP_146814.1| acylaminoacyl-peptidase [Geobacillus kaustophilus HTA426] gi|56379338|dbj|BAD75246.1| acylaminoacyl-peptidase [Geobacillus kaustophilus HTA426] Length = 673 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDL----QSNATERLTNTLFINISASYSPDSSQIVF 318 P ++ +G RA+ + + Y L + + T + ++ +SP I F Sbjct: 27 PHYAPDGTRAVFVEKSIDEEKQYRSHLWIWAADGSVRQWTFGRWRDMKPRFSPRGEMIAF 86 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 SDR G+ QL+++ +NG + ++++ K D VWSP G LIA T E+ Sbjct: 87 LSDRSGRTQLWLLPANGGEARQLTFFKNGVR-DYVWSPDGTFLIALTTLGDEE 138 Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 12/105 (11%) Query: 309 YSPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLI 361 Y+PD ++ VF + +++ + L++ ++GS + Q + D P +SP+G++I Sbjct: 29 YAPDGTRAVFVEKSIDEEKQYRSHLWIWAADGS----VRQWTFGRWRDMKPRFSPRGEMI 84 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLI 405 AF + + ++ +G + R L N ++ WSP G LI Sbjct: 85 AFLSDRSGRTQLWLLPANGGEARQLTFFKNGVRDYVWSPDGTFLI 129 >gi|85680311|gb|ABC72341.1| basic membrane protein [uncultured haloarchaeon] Length = 629 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 5/162 (3%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDR 322 +G ++ +D M++Y DL S T +LT SP+ +I + ESD Sbjct: 118 GEDGDTLIVGSSRDGQMNLYYHDLPSGETTKLTEYERAAAGGILSPECDRIAYATNESDD 177 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + +YV +GS + ++ + P W P G+ + + S + +GV D Sbjct: 178 FDNQDVYVADIDGSTPQNLNLGDTGAEASPADWGPDGERLLISDNSPDLGRLGVYHFDSE 237 Query: 382 QERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID 422 + L D+ ++P + P G ++ R ++ ++ +Y+I+ Sbjct: 238 EVTWLENDAFEESPKAFLPDGERVLGYRSREAESVPIIYNIE 279 >gi|284032800|ref|YP_003382731.1| beta-lactamase [Kribbella flavida DSM 17836] gi|283812093|gb|ADB33932.1| beta-lactamase [Kribbella flavida DSM 17836] Length = 1117 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 11/108 (10%) Query: 308 SYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + SPD +Q+V+ +DR + L+ + S G + +R++ + S P WSP G Sbjct: 20 ALSPDGNQVVYVLRTIDAAADRT-EHALWRVPSAGGEARRLT--RGTSDRAPAWSPDGTK 76 Query: 361 IAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 +AF + + ++ DG + E+L P+WSP G + FS Sbjct: 77 LAFLRAQDGPPQLWLLPADGGEPEQLTTLPLGAGTPSWSPDGERIAFS 124 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + A+ + G + R L ++ +AP WSP G L F R +DG L D G E Sbjct: 43 EHALWRVPSAGGEARRLTRGTSDRAPAWSPDGTKLAFLRAQDGPPQLWLLPAD-GGEPEQ 101 Query: 430 LINTPAYASDPQW 442 L P A P W Sbjct: 102 LTTLPLGAGTPSW 114 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + ++SPD +++ F ++G QL+++ ++G + ++++ + P WSP G+ IAF+ Sbjct: 67 APAWSPDGTKLAFLRAQDGPPQLWLLPADGGEPEQLTTLPLGA-GTPSWSPDGERIAFS 124 >gi|124006957|ref|ZP_01691786.1| MdsD protein [Microscilla marina ATCC 23134] gi|123987410|gb|EAY27130.1| MdsD protein [Microscilla marina ATCC 23134] Length = 1083 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 74/167 (44%), Gaps = 24/167 (14%) Query: 282 MDIYSVDL--QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 M + SV L Q+ + + TNT I SPD S IVF K LY + + G Sbjct: 1 MLLMSVGLYTQAQISPQWTNTPAI------SPDGSTIVFSY----KGDLYKVPTQGGTAT 50 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWS 398 ++ K PVWS G IAF F I ++ G Q +RL SN +++ Sbjct: 51 LLTLHKGHD-MKPVWSKDGQSIAFMSDRYGNFDIYLISAKGGQAKRLTYHSSNDVPSSFT 109 Query: 399 PSGRSLIF--SRKKDGDTG-------SKLYSIDLNGRNET-LINTPA 435 P G++++F SR + S+LY + L G T ++ TPA Sbjct: 110 PDGKAVLFRSSRLDNAQNAMFPSGAMSELYQVSLKGGKPTQILTTPA 156 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 26/155 (16%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG- 324 S NGK V+ + I++ ++ T+R+TNT + S+SPD I++ +R G Sbjct: 316 SPNGKEVAFVVRGE----IFAASIEGGTTKRITNTPEQERNISFSPDGRSILYAGERNGS 371 Query: 325 ----------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 KE+ Y + + + + K+ + FDP +SP G +AF + E+ + Sbjct: 372 WNLYQTSLTRKEEKYFFSATILKETPVLESKKET-FDPKYSPDGKEVAFLE---ERTTLR 427 Query: 375 VMKKDGSQERLLVEDS-------NLQAPTWSPSGR 402 V+ + R++V + Q WSP G+ Sbjct: 428 VINLASKKVRVIVPGNRNYSYVDGDQYYDWSPDGK 462 >gi|138894519|ref|YP_001124972.1| acylaminoacyl-peptidase [Geobacillus thermodenitrificans NG80-2] gi|134266032|gb|ABO66227.1| Acylaminoacyl-peptidase [Geobacillus thermodenitrificans NG80-2] Length = 672 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%) Query: 263 PRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P ++S+G + I +K +Y + + A + T + + +SPDS I Sbjct: 26 PHYASDGTHGVFVQKSIDEEKQYCSHLY-IWTEDGAVRQWTFGRWRDTRPRFSPDSKTIA 84 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS 367 F SDR G QL+++ ++G + ++++ K D VW+P G LIA T Sbjct: 85 FLSDRSGHTQLWLLPADGGEARQLTFFKNGVR-DYVWAPDGTFLIALTTLG 134 >gi|304313236|ref|YP_003812834.1| hypothetical protein HDN1F_36240 [gamma proteobacterium HdN1] gi|301798969|emb|CBL47207.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 997 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +M+ NGS KRI+Q Y WSP G IA G + I ++ +G + R + Sbjct: 414 LMRWNGSRWKRITQC--GRYLSGYWSPNGGQIAAVSMHGGQARIELLHANGERIRTVYRA 471 Query: 390 SNLQAP---TWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + +A W P G L +RK G +L S+DLN Sbjct: 472 AVGEAVGGLAWHPEGHLLAVARKSVGGV-WRLASLDLN 508 >gi|124008206|ref|ZP_01692903.1| peptidase, S41 family [Microscilla marina ATCC 23134] gi|123986305|gb|EAY26127.1| peptidase, S41 family [Microscilla marina ATCC 23134] Length = 1066 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 13/156 (8%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + S Q D I+ + RLT + + +S D I F S+R Sbjct: 30 PAISPDGNQVAFSFQGD----IWVMAANGGVARRLTIHQGYDANPIWSSDGKHIAFSSNR 85 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI------AFTKFSGEKFAIGVM 376 ++ + +NG KR++ W+ Q +++ A+ + + E+ V Sbjct: 86 ASNYDVFTIPANGGATKRLTYHSSGDQ-ATCWTAQNEVLFTSRVRAYRQIAYEREIHKVS 144 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + G+ +R+L D+ PT SP+G+ + F R G Sbjct: 145 AEGGTPQRML--DAQGYMPTQSPNGKLIAFVRGTCG 178 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 32/224 (14%) Query: 203 IRYLTPSRD-QILFEPRFS-----PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 IRY SR+ Q++FE + S N+ K T + D R D+ + + Sbjct: 261 IRYFGVSRNNQLVFERQISLYTMNANEGKAKKLTIQATN-------DYRFDQVTHQT--Y 311 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R+ + + + NGK + ++ + + I + L++ F + S + DS+ + Sbjct: 312 RNGVADYKVAPNGKYVAVEIRGE--IFIKPIAKDKRKAMNLSDHAFRDESPEWLNDST-L 368 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQ----------DKEASYFDPVWSPQGDLIAFTKF 366 VF SDR G+ LY+++S Q + + +A F P SP G IA+ + Sbjct: 369 VFISDRNGQRDLYLVRSIDKKQSNLYKTLKTKVIQLTQTKAEEFAPTLSPNGKKIAYRRG 428 Query: 367 SGEKFAIGVMKKDG--SQERLLVED-SNLQAPTWSPSGRSLIFS 407 GE + + G S E++LV+ + WSP R L +S Sbjct: 429 RGE-LVVASISATGKLSNEKVLVKGWATPGGVAWSPDSRWLSYS 471 >gi|24372890|ref|NP_716932.1| TolB domain-containing protein [Shewanella oneidensis MR-1] gi|24347011|gb|AAN54377.1|AE015575_3 TolB domain protein [Shewanella oneidensis MR-1] Length = 413 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ DL S +RLT L S++PDS +VF ++ G + + N + + S Sbjct: 53 DIFIRDLASAHEKRLTQGLEDIRGLSWTPDSQALVFATEDSGSSNGFTLDINTAQIR--S 110 Query: 343 QDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 D E + S +G+L+ +F F++G K GS LL + + P +SP Sbjct: 111 LDVEGMSYPSSVSAEGELVYHQYHRQFQMAYFSLGD-KVPGSLFPLLYSGVSHRNPDYSP 169 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 + ++F + G +++++ D+NG+ E L + + P+W Sbjct: 170 EAKRIVFVSSETGY--NEIWTSDINGQKLEQLTQLKSRVAYPRW 211 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 104/270 (38%), Gaps = 55/270 (20%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 ++P+ Q + +AT +D + +D I+ A R + M S+ G+ L+ Q Sbjct: 79 WTPDSQALVFAT-EDSGSSNGFTLD--INTAQIRSLDVEGMSYPSSVSAEGE--LVYHQY 133 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISA---SYSPDSSQIVFESDREGKEQLYVMQSNG 335 + L L L+ +S YSP++ +IVF S G +++ NG Sbjct: 134 HRQFQMAYFSLGDKVPGSLFPLLYSGVSHRNPDYSPEAKRIVFVSSETGYNEIWTSDING 193 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFT------------------------------- 364 ++++Q K + P WSP G IAF Sbjct: 194 QKLEQLTQLKSRVAY-PRWSPDGSRIAFIAPDDRNEGNRIFILDLTNKNITALASSYHNH 252 Query: 365 ---KFSGEKFAIGVMKKDGSQERLL------VEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 ++ + A+ DG E L V S A ++ S L+FSR DG+ G Sbjct: 253 GRPSWNWQGTAVLASTADGITEFYLDNRAPRVISSLSMAVGFAKSATELVFSR--DGENG 310 Query: 416 SKLYSIDLNG--RNETLINTPAYASDPQWV 443 L+ I+L E LI+T A+ + WV Sbjct: 311 --LWQINLTQPEHVEQLISTDAFRAGNNWV 338 >gi|196247878|ref|ZP_03146580.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. G11MC16] gi|196212662|gb|EDY07419.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. G11MC16] Length = 672 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%) Query: 263 PRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P ++S+G + I +K +Y + + A + T + + +SPDS I Sbjct: 26 PHYASDGTHGVFVQKSIDEEKQYCSHLY-IWTEDGAVRQWTFGRWRDTRPRFSPDSKTIA 84 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFS 367 F SDR G QL+++ ++G + ++++ K D VW+P G LIA T Sbjct: 85 FLSDRSGHTQLWLLPADGGEARQLTFFKNGVR-DYVWAPDGTFLIALTTLG 134 >gi|317038874|ref|XP_003188680.1| hypothetical protein ANI_1_2282184 [Aspergillus niger CBS 513.88] Length = 319 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 33/171 (19%) Query: 277 QKDEAMDIYSVDLQSNAT-----ERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYV 330 + D DIY V + +T E + ++ ++ SAS SPD + F + R + Q+ + Sbjct: 95 RGDGQADIYRVAINGTSTVGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIML 154 Query: 331 MQSNGSDQKR------ISQDKEAS----YFDPVWSPQGDLIAFTK-----------FSG- 368 M K IS+ ++ YF P WSP G+ I FT SG Sbjct: 155 MVLETGSLKNLTLIPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGW 214 Query: 369 ---EKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDT 414 ++ +I + +G+ RL+ SN +P +SP+G+ L+F DT Sbjct: 215 EHTQELSIYAARPNGTDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTEDT 265 >gi|229819021|ref|YP_002880547.1| peptidase S9 prolyl oligopeptidase active site domain protein [Beutenbergia cavernae DSM 12333] gi|229564934|gb|ACQ78785.1| peptidase S9 prolyl oligopeptidase active site domain protein [Beutenbergia cavernae DSM 12333] Length = 610 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G L+A++ +++ V G + R L +D +++A WSPSG L FS +DG Sbjct: 20 SPDGTLVAYSAHDDGAYSLLVRPVAGGEPRRLARFDDRSVRAVAWSPSGDRLAFSADRDG 79 Query: 413 DTGSKLYSIDLNG 425 D ++++ + +G Sbjct: 80 DEQTQIFVVGADG 92 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT- 364 + + SPD + + + + +G L V G + +R+++ + S WSP GD +AF+ Sbjct: 16 AVALSPDGTLVAYSAHDDGAYSLLVRPVAGGEPRRLARFDDRSVRAVAWSPSGDRLAFSA 75 Query: 365 -KFSGEKFAIGVMKKDGSQE-RLLVEDS---NLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + E+ I V+ DG RL D L ++P G +L++S ++ S + Sbjct: 76 DRDGDEQTQIFVVGADGGDPVRLTDRDDRQYGLAEQPFTPDGATLVYSGNDRDESASDVL 135 Query: 420 SIDL 423 DL Sbjct: 136 VHDL 139 >gi|134074975|emb|CAK39055.1| unnamed protein product [Aspergillus niger] Length = 649 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 35/185 (18%) Query: 265 FSSNGKRALISVQK--DEAMDIYSVDLQSNAT-----ERLTNTLFINISASYSPDSSQIV 317 +S + K + ++ D DIY V + +T E + ++ ++ SAS SPD + Sbjct: 46 WSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAEVEPVASSPGVDDSASISPDGKMLA 105 Query: 318 FESDREGK-EQLYVMQSNGSDQKR------ISQDKEAS----YFDPVWSPQGDLIAFTK- 365 F + R + Q+ +M K IS+ ++ YF P WSP G+ I FT Sbjct: 106 FATSRYNQTSQIMLMVLETGSLKNLTLIPGISEAANSALPNGYFKPTWSPDGEWIVFTSD 165 Query: 366 ----------FSG----EKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRK 409 SG ++ +I + +G+ RL+ SN +P +SP+G+ L+F Sbjct: 166 RNTPWRGHSDGSGWEHTQELSIYAARPNGTDFRLVSSRSNYTQGSPRFSPNGKRLVFYEM 225 Query: 410 KDGDT 414 DT Sbjct: 226 LTEDT 230 >gi|218779970|ref|YP_002431288.1| hypothetical protein Dalk_2126 [Desulfatibacillum alkenivorans AK-01] gi|218761354|gb|ACL03820.1| WD40 domain protein beta Propeller [Desulfatibacillum alkenivorans AK-01] Length = 345 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+++ + +LT T + + S+SPD ++I++ G +Y+M +G ++ +++ Sbjct: 79 DIWTMRSDGSNLTKLTETGTAS-APSWSPDGTRIIYTDSAAGNRDIYIMDQDGENKVQLT 137 Query: 343 QDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------ 395 + F+ SP G IA+ +++G + M DGS ++ ++ L A Sbjct: 138 S-ADNDEFNACMSPDGATIAYIYEYNGNNRRLWTMAADGSSQQEVLAPVTLNATYDTITF 196 Query: 396 --TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 WS G L+ L+S++++ ++ L Sbjct: 197 TNGWSTDGTYLLIQTSAPSANYKDLWSVNMSNVSDVL 233 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 19/205 (9%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR-----A 249 +MD+DG N LT S D F SP+ +AY + + R++ M A Sbjct: 125 IMDQDGENKVQLT-SADNDEFNACMSPDGATIAYIYEYNGNNRRLWTMAADGSSQQEVLA 183 Query: 250 PKRI-GNFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATE--RLTNTL--- 301 P + + ++ +S++G LI A D++SV++ SN ++ RLT+ Sbjct: 184 PVTLNATYDTITFTNGWSTDGTYLLIQTSAPSANYKDLWSVNM-SNVSDVLRLTDASGGT 242 Query: 302 --FINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQ 357 + S S + IVF S L + M S+GS+ + ++ + Y +P WS Sbjct: 243 GGLMESSGLDSWYENTIVFNSRSLSGTTLPIVRMDSDGSNMEVLASENNVFYNNPTWSSN 302 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQ 382 G I F+ + + +M DG + Sbjct: 303 GAKICFSSDATGVSELYIMNPDGGE 327 >gi|296282776|ref|ZP_06860774.1| peptidase S9, prolyl oligopeptidase active site region [Citromicrobium bathyomarinum JL354] Length = 710 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 10/106 (9%) Query: 310 SPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD SQI + SD V G ++ QD A F P WSP GD +A Sbjct: 71 SPDGSQIAYVRQSNDVMSDSTRSAIWLVDARTGEEKPVAGQDGNA--FSPRWSPSGDRLA 128 Query: 363 FTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFS 407 F +G + V DG + RL ++ + WSP GRS+ ++ Sbjct: 129 FVSTNGGSAQLWVRWMDGGEAVRLTGLPTSPSSMAWSPDGRSIAYT 174 >gi|83816557|ref|YP_445077.1| acylaminoacyl-peptidase [Salinibacter ruber DSM 13855] gi|83757951|gb|ABC46064.1| acylaminoacyl-peptidase [Salinibacter ruber DSM 13855] Length = 839 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGSQE 383 + +LYV +++G D R+ E P W P G +AF + +G + G Sbjct: 29 RARLYVARTSGRDDPRLLFQDEHDIRAPAWHPDGTHLAFVRPVNGTPQVFVIPLNGGVPY 88 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFS 407 RL QAP W P G L+F+ Sbjct: 89 RLTDTPHGAQAPQWGPDGERLLFA 112 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 12/98 (12%) Query: 355 SPQGDLIAFT-------KFSGEKFAIGVMKKDGSQE-RLLVEDSN-LQAPTWSPSGRSLI 405 SP+G +A+T + + + V + G + RLL +D + ++AP W P G L Sbjct: 7 SPRGRSVAYTVRRLSPGQAPAPRARLYVARTSGRDDPRLLFQDEHDIRAPAWHPDGTHLA 66 Query: 406 FSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 F R +G +++ I LNG L +TP A PQW Sbjct: 67 FVRPVNGT--PQVFVIPLNGGVPYRLTDTPHGAQAPQW 102 >gi|162453807|ref|YP_001616174.1| hypothetical protein sce5531 [Sorangium cellulosum 'So ce 56'] gi|161164389|emb|CAN95694.1| hypothetical protein sce5531 [Sorangium cellulosum 'So ce 56'] Length = 458 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 13/137 (9%) Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 T+DD L + ++ P R+ + + LA +G+ A + + D++++DL Sbjct: 92 TFDDWVKEYSGLGEPEAEKRPPRLRRAKELALA-----SGRIAFM-----RSGDVFAMDL 141 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEAS 348 + +LT NI+ ++ D +I F S+R+G ++++M ++G++Q+ I+ A Sbjct: 142 ATGVEAQLTRKTQRNIAPTFLGDGRRIAFLSNRDGMAWRVFLMNADGTEQRPITGKFSAW 201 Query: 349 YFDPVW--SPQGDLIAF 363 Y +P + SP G +A+ Sbjct: 202 YGEPSFAISPDGARVAY 218 >gi|116620656|ref|YP_822812.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116223818|gb|ABJ82527.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 672 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 260 ILAPRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 I P+ S +GK VQ + I+ V L +++T+ N +SPDS Sbjct: 32 IADPQISPDGKWVAFQVQTVDVPGNKKPAQIWIVPLNGGTPQQITHDGEANQRPRWSPDS 91 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +I + SDR G Q+++M +G + K+++ Sbjct: 92 KRIAYVSDRGGSSQIWMMDPDGGNAKQVT 120 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 14/131 (10%) Query: 310 SPDSSQIVFES---DREGKE---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD + F+ D G + Q++++ NG ++I+ D EA+ P WSP IA+ Sbjct: 38 SPDGKWVAFQVQTVDVPGNKKPAQIWIVPLNGGTPQQITHDGEANQ-RPRWSPDSKRIAY 96 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 G I +M DG + + + + S G++++F+ + + G+ Sbjct: 97 VSDRGGSSQIWMMDPDGGNAKQVTDVVTEADGHVLSGDGKNVVFTSEVFPECGAD----- 151 Query: 423 LNGRNETLINT 433 N N+ LI+ Sbjct: 152 -NACNQKLIDA 161 >gi|290955378|ref|YP_003486560.1| hypothetical protein SCAB_8041 [Streptomyces scabiei 87.22] gi|260644904|emb|CBG67990.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1070 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFS 407 P SP GDL+AF + G F + M+ DGS+ + + + +AP WSP G L F Sbjct: 99 PTHSPDGDLVAFCAYQGGGFHLWTMRPDGSELKRRTDGPWDDRAPAWSPDGTRLAFC 155 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 7/101 (6%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P SP G +AF + A + + R L AP W+P GRSL+++ +D Sbjct: 367 PALSPDGRSVAFAALNALWLARTAGGRPPRRLRQSPPTRWLLAPAWAPDGRSLVYADDRD 426 Query: 412 GDTGSKLYSIDLNGRNETLINT-----PAYASDPQWVGFMD 447 G G +Y DL ET + T PA + D + + +D Sbjct: 427 GLLG--VYRHDLATGEETALATGGRVMPALSPDGRRLACLD 465 >gi|325281418|ref|YP_004253960.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] gi|324313227|gb|ADY33780.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] Length = 1072 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 38/218 (17%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 I+D+I Q I ++I F+S+ I+ +L V + R LT ++D + P Sbjct: 213 ITDEIRQDIIPMWSADGNKIYFISDR--DDIM--NLYVYNLSDKTTRQLTFNKDYDIKFP 268 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRA---PKRI---------------GNFRSM 259 +Q Y+ IL Y DTR ++A P I G M Sbjct: 269 ALGGDQ-----IVYEQGGIL--YKFDTRTEKASPIPVEIDNDQNWARPEWKDVSGQISRM 321 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVF 318 +AP NG+R +++ + D I+++ +S T LTN+ N + +SPD I + Sbjct: 322 DVAP----NGERVVVAARGD----IFTLPAKSGITYNLTNSSNANDRNPQWSPDGKWIAY 373 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 SD+ G+ +++ + ++K +++D + FD W+P Sbjct: 374 ISDKNGEFNIWLRDAFTGEEKMLTKDLKTYIFDLKWAP 411 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 18/154 (11%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NGK+ + S A D+Y+V Q +LT+ + + SPD I F +G + Sbjct: 31 NGKQIVFSY----AGDLYTVSDQGGTARKLTSDIGYEMFPRISPDGKYIAFTGQYDGNTE 86 Query: 328 LYVMQSNGSDQKRIS------QDKEASYFDP-----VWSPQGDLIAF--TKFSGEKFAIG 374 ++V+ S G +R++ +D P W+P I F +F+ F Sbjct: 87 VFVIPSAGGIPRRLTYTATLNRDDLGDRMGPNNIVIGWTPDSKHILFRTRQFTFNDFTGQ 146 Query: 375 VMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFS 407 +M E + + N ++SP G+ L ++ Sbjct: 147 LMTVPAEGGEAVEIPLKNGGFASYSPDGKKLAYN 180 >gi|189463380|ref|ZP_03012165.1| hypothetical protein BACCOP_04097 [Bacteroides coprocola DSM 17136] gi|189429809|gb|EDU98793.1| hypothetical protein BACCOP_04097 [Bacteroides coprocola DSM 17136] Length = 708 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 10/146 (6%) Query: 306 SASYSPDSSQIVFE----SDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S+S SPD QI + S +E K +YVM ++G++ ++ + S +P W G Sbjct: 59 SSSVSPDGKQIAYTVSYYSVKENKSHTVIYVMNADGTNNLLLTHTAD-SEVEPTWIKDGS 117 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF-SRKKDGDTGSK 417 IAF + I M DGS+ + L + ++ +SP ++F S+ K G S Sbjct: 118 KIAFLTAASGSMQIWEMNPDGSERKQLSSYEGGIEGFKFSPDESKVLFISQVKYGQRTSD 177 Query: 418 LYSIDLNGRNETLINTPAYASDPQWV 443 +Y DL+ + +IN Y +WV Sbjct: 178 IYP-DLDKASGKVINDLMYKHWDEWV 202 >gi|94969743|ref|YP_591791.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] gi|94551793|gb|ABF41717.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] Length = 919 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 Q + ERLTN+ ++ S SPD +V++ GK L++ Q S ++ D + Y Sbjct: 379 QQMSIERLTNSGRVDGGTSISPDGKYVVYQMIEGGKSSLWLRQIVTSSSVKLLPDSDIGY 438 Query: 350 FDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFS 407 +SP G+ + FT+ + + ++ V+ G + + + N+ P +SP G+ F Sbjct: 439 GPTTFSPDGNFVYFTQQNSDAPDSLYVVPTLGGTPKKIFD--NINGPIAFSPDGKQFAFV 496 Query: 408 RK 409 R+ Sbjct: 497 RE 498 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 ++++Q +I+ DL + ++LT I + + S +I + SD G ++V Sbjct: 642 IVTIQNAITSNIFVSDLNGSNAKQLTQDQ-IAGTQGVAGGSGKIAYNSDASGTSSMWVTD 700 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 NG +S K+ + P SP G +A+ K I V DG+ R L Sbjct: 701 ENGGTPVLVSPPKDFTQ-TPTMSPDGKHVAYLCLHDNKLNIWVADTDGNNIRALT 754 >gi|313159781|gb|EFR59137.1| peptidase, S9A/B/C family, catalytic domain protein [Alistipes sp. HGB5] Length = 710 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Query: 271 RALISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R L+ Q D M I+ DL + A RLT+T N +S D +I F SDR Sbjct: 63 RTLLYAQTDYNMAENRGVTTIWVEDLATKAVTRLTDTASNNADPKWSADGEKIYFLSDRS 122 Query: 324 GKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGD 359 G Q++ M G + +++S DK+ F SP+GD Sbjct: 123 GSMQVWEMTPAGGNARQLSAFDKDVEGFGI--SPRGD 157 >gi|71281981|ref|YP_270182.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71147721|gb|AAZ28194.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 712 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 10/133 (7%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSG 368 SPD SQ+ + GK Y+ N SD ++S PVWSP IAF + Sbjct: 195 SPDLSQLAYTKVVRGKPS-YINIENLSDHSKMSVSHPRGKLSRPVWSPTESKIAFL-YQH 252 Query: 369 EKFAI-------GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 ++ I + KD QE + +SP G+ L F+ ++ G +++ + Sbjct: 253 KQVCIIFLAEQKEIKNKDNWQEITECSGESWPHLVFSPDGQYLYFNDRQSKANGYQIFRV 312 Query: 422 DLNGRNETLINTP 434 DL + + +IN P Sbjct: 313 DLLNKQKDIINQP 325 >gi|281420434|ref|ZP_06251433.1| prolyl oligopeptidase family protein [Prevotella copri DSM 18205] gi|281405579|gb|EFB36259.1| prolyl oligopeptidase family protein [Prevotella copri DSM 18205] Length = 720 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 A SP+ Q+V++ + +G + L++M +NG +QK ++ D + S D W G Sbjct: 49 GAEASPNGKQVVYQVGYYSVKENKGHQMLFIMDANGKNQKALTTDAK-SETDAAWIQGGQ 107 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRK 409 IAF + G+ ++ M DG+ + L D +Q +SP G+ +I ++ Sbjct: 108 KIAFIR-DGQLWS---MNPDGTGRKQLTNDKLGIQGFRFSPDGKKVILIKE 154 >gi|226226684|ref|YP_002760790.1| hypothetical protein GAU_1278 [Gemmatimonas aurantiaca T-27] gi|226089875|dbj|BAH38320.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 441 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 28/187 (14%) Query: 283 DIYSVDLQSNATERLTNT---LFINISASYSP----DSSQIVFESD-REGK----EQLYV 330 DIY ++L + RLT S ++SP + ++ + + R+G +L Sbjct: 246 DIYVMNLDGSNLTRLTAAERGRMSYASPAWSPRRIDGAYRLAYAREQRDGDGYAVSRLES 305 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGS----QERL 385 M+++G+ ++ D S +P WSP G +AF + + + + ++ DG E Sbjct: 306 MRADGTAMLALTIDTTGSDTEPAWSPDGARVAFVRRGAAARGDLWAVQLDGHARPVAEHA 365 Query: 386 LVE---DSNLQAPTWSPSGRSLIFSRKKD--GD-TGSKLYSIDLNG---RNETLINTPAY 436 L+E D +AP+WSP G+ L F + GD ++YS+D +G R T + Sbjct: 366 LLENELDDVQRAPSWSPDGKRLAFISAHEILGDFYNWQVYSVDASGTDLRRHTSVAR--E 423 Query: 437 ASDPQWV 443 ++P WV Sbjct: 424 HANPVWV 430 >gi|222480106|ref|YP_002566343.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453008|gb|ACM57273.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 633 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDR 322 S +G+ L+ +D M++Y DLQS+ T +LT+ + +PD +I + E+D Sbjct: 117 SEDGETLLLGSSRDGQMNLYRHDLQSDETTKLTDYERAVAAGELAPDGDRIAYATNETDA 176 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLI 361 +YV ++GS+ + + + P+ W P GD + Sbjct: 177 YENLDVYVADADGSNPRNLDIGDVGAEAAPIDWGPDGDRL 216 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 12/88 (13%) Query: 352 PVWSPQGDLIA-FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-------TWSPSGRS 403 P SP G+ +A + +G + +DG++E+L S+ + P W PSG Sbjct: 22 PRVSPDGETVALYYDVTGRNELHLLDPRDGNREQL----SDGEVPRSVRAGFEWDPSGDR 77 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLI 431 L + R +DGD ++++ L+G +E ++ Sbjct: 78 LFYHRDEDGDEQHDVWAMSLDGESEPIV 105 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-----SYFDPVWSPQGDL 360 S SPD + D G+ +L+++ +++++S D E + F+ W P GD Sbjct: 21 SPRVSPDGETVALYYDVTGRNELHLLDPRDGNREQLS-DGEVPRSVRAGFE--WDPSGDR 77 Query: 361 IAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + E+ + M DG E ++ D L+ + S G +L+ +DG L Sbjct: 78 LFYHRDEDGDEQHDVWAMSLDGESEPIVEMDGQLRLHSVSEDGETLLLGSSRDGQM--NL 135 Query: 419 YSIDL 423 Y DL Sbjct: 136 YRHDL 140 >gi|291615637|ref|YP_003518379.1| YidR [Pantoea ananatis LMG 20103] gi|291150667|gb|ADD75251.1| YidR [Pantoea ananatis LMG 20103] Length = 428 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S+I F +D + QL+V+ NG + ++++ + W P+G+ IAF Sbjct: 315 SPDGSKIAFLMADNQQVIQLWVVSPNGGEPHQVTRLTHSIQSAFSWQPRGEAIAFIS--- 371 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-----WSPSGRSLIFSRKKDG 412 + + G ERL V S +AP+ WSP G+ + F R+ +G Sbjct: 372 DNSVMRCHVVTGECERLTVRSS--EAPSGDAVVWSPDGKQIAFMREIEG 418 >gi|262196288|ref|YP_003267497.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079635|gb|ACY15604.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1599 Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 112/250 (44%), Gaps = 21/250 (8%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +V+ ++ V + DG+ + S + ++ FSP+ +++A A+ D + V L + Sbjct: 1154 IVTSSADKTVRVWNGDGSGAPLVVGSHESEVWAAAFSPDGKQIATASQD----VFVRLWN 1209 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 AP + + F+ +G R+L++ D + I+ ++ S T + + Sbjct: 1210 ADGSGAPHVLSGHSGGVRCLDFNPDG-RSLLTASLDGELRIWPLE-GSEFTVLREHEAGV 1267 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N S S+ PD Q+ + +G +L+ GS R+ E+ D ++SP G + Sbjct: 1268 N-SISFHPD-GQVFVSASADGTLRLWPADGRGSG--RVLGRHESMATDAMFSPDGRYVVS 1323 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFS------RKKDGDTG 415 + F G ++ V + DG L + D + + A +SP G+ ++ + R D G Sbjct: 1324 SAFDG---SVRVWEVDGDGTTLALRDHDGMVFAAAFSPDGQRIVTTSQDKTARVWDARDG 1380 Query: 416 SKLYSIDLNG 425 +L +D +G Sbjct: 1381 RELLVLDGHG 1390 >gi|171689846|ref|XP_001909863.1| hypothetical protein [Podospora anserina S mat+] gi|170944885|emb|CAP70997.1| unnamed protein product [Podospora anserina S mat+] Length = 228 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 9/171 (5%) Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 KI T S Q++ G G S + F + V SG ++ + D + Sbjct: 31 KIWDTASGSSTQTLEGHGGSVLS-VAFSPDGQRVASGSSDRTIKIWDTASGSCTQTLEGH 89 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +++ FSP+ Q+VA ++D+ + + DT + + + S++L+ FS +G+ Sbjct: 90 GDLVWSVAFSPDGQRVASGSHDN----TIKIWDTASGSSTQTLEGHGSLVLSVAFSPDGQ 145 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 R + S D + I+ ++T+ L +S ++SPD ++ SD Sbjct: 146 R-VASGSHDNTIKIWDT-ASGSSTQTLEGHGGSVLSVAFSPDGQRVASGSD 194 >gi|162452827|ref|YP_001615194.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161163409|emb|CAN94714.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1529 Score = 45.1 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 28/231 (12%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ Q++A A++D +RV+ D + P + + + A FS +GKR + + Sbjct: 976 FSPDGQRIASASHDR--TVRVWKADGTGE--PLVLRGHDAPVYAVAFSPDGKR-IATGSY 1030 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSD 337 D ++S D + + ++SPD Q+V SD+ + V ++NG+ Sbjct: 1031 DHTARVWSADGSGEPVVLRGHEHEVQ-GVAFSPDGQQLVTASSDKTAR----VWKANGTG 1085 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 + + + EA + +SP G I S +K A V K DG+ E L++ Q W Sbjct: 1086 EPLVLRGHEAPVYSAAFSPDGRRI--VTGSRDKTA-RVWKADGTGEPLVLRGH--QDAVW 1140 Query: 398 ---SPSGRSLIFSRKKDGDTGSKLYSIDLNG------RNETLINTPAYASD 439 SP G+ + + DT +++S D G R+ I + A++ D Sbjct: 1141 AAFSPDGKRIATASY---DTTVRVWSADGTGEPLVLLRDHEPIASVAFSHD 1188 >gi|21229189|ref|NP_635111.1| hypothetical protein MM_3087 [Methanosarcina mazei Go1] gi|20907756|gb|AAM32783.1| hypothetical protein MM_3087 [Methanosarcina mazei Go1] Length = 413 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 8/135 (5%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRIS 342 ++ +D N RL + + + P ++++ S D +GK L+V+ +G++Q +++ Sbjct: 169 LWIIDRDGNNRARLGTSENVGTGKDWCPLGLRVIYSSKDSQGKYDLWVIDYHGTNQTQLT 228 Query: 343 QDKEASY--FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWS 398 SY ++P +SP G IA+ G I + +G+ L ++ P WS Sbjct: 229 N---TSYNEWNPSFSPNGKWIAYVSDEGGSPDIWLRDIEGNYRSRLTNNTGRYDSIPRWS 285 Query: 399 PSGRSLIFSRKKDGD 413 P G ++F G+ Sbjct: 286 PEGSKIMFEGYNPGN 300 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYS 310 R+G ++ + G R + S + + D++ +D +LTNT + + S+S Sbjct: 181 RLGTSENVGTGKDWCPLGLRVIYSSKDSQGKYDLWVIDYHGTNQTQLTNTSYNEWNPSFS 240 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 P+ I + SD G +++ G+ + R++ + P WSP+G I F ++ Sbjct: 241 PNGKWIAYVSDEGGSPDIWLRDIEGNYRSRLTNNTGRYDSIPRWSPEGSKIMFEGYN 297 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 90/198 (45%), Gaps = 13/198 (6%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTNTLFINIS--ASYSPDSSQIV 317 L+P +S++G+ +V+ + + D S +++N +E + T N++ + S D +V Sbjct: 53 LSPVWSADGEYIFYTVEGNGSNDFKSYRMKANGSEIKRTGIGEGNLTGFSDLSLDGRDLV 112 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVM 376 + LY+ ++ D + S W G I +T+ S G + ++ Sbjct: 113 IIKSMGSQLDLYLANLENGTVTPVASDSQISEGWGSWCRFGKKITYTQESAGMPPQLWII 172 Query: 377 KKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINT- 433 +DG+ L N+ W P G +I+S KD L+ ID +G N+T L NT Sbjct: 173 DRDGNNRARLGTSENVGTGKDWCPLGLRVIYS-SKDSQGKYDLWVIDYHGTNQTQLTNTS 231 Query: 434 -----PAYASDPQWVGFM 446 P+++ + +W+ ++ Sbjct: 232 YNEWNPSFSPNGKWIAYV 249 >gi|294506953|ref|YP_003571011.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Salinibacter ruber M8] gi|294343281|emb|CBH24059.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Salinibacter ruber M8] Length = 898 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 325 KEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGSQ 382 + +LYV +++G D R+ QDK +P W P G +AF + +G + G Sbjct: 88 RARLYVARTSGRDDPRLLFQDKH-DIREPAWHPDGTHLAFVRPVNGTPQVFVIPLNGGVP 146 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFS 407 RL QAP W P G L+F+ Sbjct: 147 YRLTDTPHGAQAPQWGPDGERLLFA 171 >gi|116624825|ref|YP_826981.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227987|gb|ABJ86696.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 886 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 12/195 (6%) Query: 254 GNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 GN+ S P S +G RA + + + DI+ +D+ R T+ + ++SPD Sbjct: 609 GNYGS---GPTLSPDGTRAAVDKIDAAGSRDIWVLDIARGVATRSTSDAAQDHGPAWSPD 665 Query: 313 SSQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 +++VF S R G + +Y +S+G+ ++ + F WSP + ++ +G+K Sbjct: 666 GTRLVFSSARGAAGTDGIYQRESSGTGKEEPLLQGHSLIFPNGWSPDVRYLLYS-VTGQK 724 Query: 371 FA--IGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + ++ G+ +E N + +SP GR + ++ + G + S G Sbjct: 725 TGSDLLLLPAAGTPPVPYLEGPYNEKQGQFSPDGRWIAYASDETGSFEVYVQSFP-AGAG 783 Query: 428 ETLINTPAYASDPQW 442 + L++T A S P+W Sbjct: 784 KFLVST-AGGSQPRW 797 >gi|332663301|ref|YP_004446089.1| peptidase S9 prolyl oligopeptidase [Haliscomenobacter hydrossis DSM 1100] gi|332332115|gb|AEE49216.1| peptidase S9 prolyl oligopeptidase [Haliscomenobacter hydrossis DSM 1100] Length = 691 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 260 ILAPRFSSNGKRALISV----QKDEAMD--IYSVDLQSNATERLTNTLFINISASYSPDS 313 I P S +GK + +V KD + D I+ A + +T + S +SPD Sbjct: 41 IGTPILSPDGKHLVYTVGSTDWKDNSYDTEIWLAREGEEAFQLTRSTKGSSTSPKWSPDG 100 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFT 364 I F S R K Q++V++ NG + ++IS +D+ F+ WSP G A T Sbjct: 101 KWIAFTSSRNDKSQIFVIRPNGGEAQQISNEDEGVGGFE--WSPDGKQFAIT 150 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 310 SPDSSQIVFE-SDREGKEQLY----VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SPD +V+ + K+ Y + G + ++++ + S P WSP G IAFT Sbjct: 47 SPDGKHLVYTVGSTDWKDNSYDTEIWLAREGEEAFQLTRSTKGSSTSPKWSPDGKWIAFT 106 Query: 365 KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 +K I V++ +G + +++ ED + WSP G+ + Sbjct: 107 SSRNDKSQIFVIRPNGGEAQQISNEDEGVGGFEWSPDGKQFAIT 150 >gi|88803172|ref|ZP_01118698.1| putative peptidase/protease family protein [Polaribacter irgensii 23-P] gi|88780738|gb|EAR11917.1| putative peptidase/protease family protein [Polaribacter irgensii 23-P] Length = 1080 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 16/142 (11%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ SPD +QI F K LY + S G + ++++ Y VW+ +G IAF Sbjct: 27 SAISPDGTQIAFTY----KGDLYKVNSKGGNAQQLTFHSAHDY-KAVWNKEGTKIAFASN 81 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFS---------RKKDGDTGS 416 F I VM G Q L SN + P T+S + + ++F R+ + S Sbjct: 82 RYGNFDIYVMNAGGGQATRLTYHSNDEYPYTFSANDQEVLFGALRQDTAEHRQYPHGSQS 141 Query: 417 KLYSIDLN-GRNETLINTPAYA 437 +LYS+ + G+ L+ PA A Sbjct: 142 ELYSVPVTMGKVSQLLTIPAEA 163 >gi|224023742|ref|ZP_03642108.1| hypothetical protein BACCOPRO_00458 [Bacteroides coprophilus DSM 18228] gi|224016964|gb|EEF74976.1| hypothetical protein BACCOPRO_00458 [Bacteroides coprophilus DSM 18228] Length = 1088 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ ++ N T+++TNT + S++PD + + S+REG Q+Y D K + Sbjct: 337 DVFVTSVEYNTTKQITNTPEQERNLSFAPDGRSLAYSSEREGLWQVYQSSLTNKDDKLFT 396 Query: 343 QDKE----------ASYFDPVWSPQGDLIAF 363 E A+ F P +SP G IAF Sbjct: 397 YANEIKEERLTNSTAASFQPQYSPDGKEIAF 427 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPDS +I F S+R+G +Y++ G +R++ Sbjct: 45 DIYTVPANGGKATQLTTNAAHDTHPIWSPDSKKIAFASNRQGSMDIYIIDKEGGTPQRLT 104 >gi|298250552|ref|ZP_06974356.1| hypothetical protein Krac_3234 [Ktedonobacter racemifer DSM 44963] gi|297548556|gb|EFH82423.1| hypothetical protein Krac_3234 [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 17/195 (8%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 ++LA +S +GKR + SV D A+ +++ S TE +YSPD + Sbjct: 81 VVLAASWSLDGKR-IASVGFDGAVRVWNA---STGTELWKRAFPGTHEVAYSPDGQYVAV 136 Query: 319 ESDREGKEQ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + G + +Y++ + ISQ + WSP IA++ +G I Sbjct: 137 GTYVGGGDAGSGLVYILNAASGQTSFISQKYDHGITGLSWSPDSSAIAYSVENG-TIQIL 195 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN------GR 426 +K +G ++ L + A WSP+G+ L ++ G+ ++ +I + Sbjct: 196 DIKTNGRNNKVYRLAASDTVGAVAWSPNGKFLAWAVTTPGNPQVQVINISVGHTMYNYHE 255 Query: 427 NETLINTPAYASDPQ 441 + LIN A++ D Q Sbjct: 256 HSDLINAIAWSPDSQ 270 >gi|327395903|dbj|BAK13325.1| cytoplasmic protein YidR [Pantoea ananatis AJ13355] Length = 417 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S+I F +D QL+V+ NG + ++++ + W P+G+ IAF Sbjct: 304 SPDGSKIAFLMADNHQVIQLWVVSPNGGEPHQVTRLTHSIQSAFSWQPRGEAIAFIS--- 360 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-----WSPSGRSLIFSRKKDG 412 + + G ERL V S +AP+ WSP G+ + F R+ +G Sbjct: 361 DNSVMRCHVVTGECERLTVRSS--EAPSGDAVVWSPDGKQIAFMREIEG 407 >gi|325111049|ref|YP_004272117.1| hypothetical protein Plabr_4524 [Planctomyces brasiliensis DSM 5305] gi|324971317|gb|ADY62095.1| WD40-like beta Propeller containing protein [Planctomyces brasiliensis DSM 5305] Length = 339 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 68/126 (53%), Gaps = 15/126 (11%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +LT++ + + SPD IV+ + + + + L+ ++ +G ++++++ D + + P Sbjct: 86 QLTDSPAYETAPAVSPDGVWIVYAAGQWPDAADHLFRIRIDGEEKQQLT-DSDGNDTAPA 144 Query: 354 WSPQGDLIAFT-----KFSG------EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSG 401 +SP G + F ++ G E+ I +M DGS R+LV E+ + AP +S G Sbjct: 145 FSPDGKSVVFVRETEYRWGGLASNWTERGMICLMHADGSNLRILVSEELDAFAPAFSADG 204 Query: 402 RSLIFS 407 RS+I+S Sbjct: 205 RSIIYS 210 >gi|331695060|ref|YP_004331299.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949749|gb|AEA23446.1| peptidase S9 prolyl oligopeptidase active site domain protein [Pseudonocardia dioxanivorans CB1190] Length = 660 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 43/199 (21%) Query: 258 SMILAPRFSSNGKR-ALISVQKDEAMDIYSVDL------QSNATERLTNTLFINISASYS 310 + I PR S +G++ A + D A + Y + S+ + + + +S Sbjct: 10 AQISDPRVSPDGRQVAFVVTHVDMAENTYRSGVWLAAADGSSPPQPFSAGEHGDGQPRWS 69 Query: 311 PDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----- 363 PD ++ F S R E L+V +G + R ++ + DP WSP G IAF Sbjct: 70 PDGRRLAFTSRRGTDEHPTLHVAPVDGPGEVRTICERPEAIEDPAWSPDGTRIAFTSRER 129 Query: 364 ---------------------TKFSGEKF------AIGVMKKDGSQERLLVEDS--NLQA 394 T+ GE + ++ V+ DGS LV N A Sbjct: 130 TARFDEPEEKARPPRRIDRLVTRLDGEGWIVDRPRSVFVVAVDGSGPPTLVAGGPYNHGA 189 Query: 395 PTWSPSGRSLIFSRKKDGD 413 P+WSP ++ + + D Sbjct: 190 PSWSPDSATIAVTADRTPD 208 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 17/118 (14%) Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFT----KFSGEKFAIGV--MKKDGS---QERLL 386 +D RI+Q DP SP G +AF + + GV DGS Q Sbjct: 4 ADIARIAQ-----ISDPRVSPDGRQVAFVVTHVDMAENTYRSGVWLAAADGSSPPQPFSA 58 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--TLINTPAYASDPQW 442 E + Q P WSP GR L F+ ++ D L+ ++G E T+ P DP W Sbjct: 59 GEHGDGQ-PRWSPDGRRLAFTSRRGTDEHPTLHVAPVDGPGEVRTICERPEAIEDPAW 115 >gi|294673806|ref|YP_003574422.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] gi|294473896|gb|ADE83285.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] Length = 1071 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y+V +LT + +SPD +++ F S REG +YVM + GS+ R++ Sbjct: 47 DVYTVAASGGKARQLTTNAAYDACPVWSPDGTKLAFASSREGSMDVYVMDAQGSEPVRLT 106 Query: 343 QD-----------KEASYFDPVWSPQGDLIAF 363 + E F W P I F Sbjct: 107 TNSTDEMPMVWRGNEHVLFSASWMPSAQSILF 138 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 DI+ ++ T+++TNT S ++SPD +V+ ++R G Q+Y + ++K Sbjct: 331 DIFVTSVEYKTTKQITNTPQQERSVNFSPDGRSLVYCAERGGVWQIYQTKLKNKNEKLFT 390 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 R++Q E S P +SP G +A+ K E I + K G + +L N Sbjct: 391 YATSLQEERLTQSNETS-LQPQYSPDGKEVAYFKNRAELCVINL--KTGLERTVLDGKYN 447 Query: 392 LQAP------TWSPSGRSLIFS 407 WSP + L+ S Sbjct: 448 YSYSDGDIWFEWSPDSKWLLAS 469 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 26/138 (18%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 SPD I F K +Y + ++G ++++ + A+Y PVWSP G +AF Sbjct: 34 SPDGKTIAFAY----KGDVYTVAASGGKARQLTTN--AAYDACPVWSPDGTKLAFASSRE 87 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-------------TWSPSGRSLIFSRKKDGDTG 415 + VM GS+ L +S + P +W PS +S++F + Sbjct: 88 GSMDVYVMDAQGSEPVRLTTNSTDEMPMVWRGNEHVLFSASWMPSAQSILFPGE------ 141 Query: 416 SKLYSIDLNGRNETLINT 433 +++Y + + G + +T Sbjct: 142 NQVYEVSIKGGRPRMFST 159 >gi|170728218|ref|YP_001762244.1| peptidase S41 [Shewanella woodyi ATCC 51908] gi|169813565|gb|ACA88149.1| peptidase S41 [Shewanella woodyi ATCC 51908] Length = 1079 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 35/189 (18%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DIY + Q R+T+ + SPD I F +D EG +Y++ + G KR Sbjct: 39 AGDIYVSNKQGQQVTRITSHAANEYAPHLSPDGQWIAFTADYEGNNDVYIVPATGGQPKR 98 Query: 341 ISQDKEASYFDPV--WSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERLL---VE 388 ++ D V WSP G + FT +G+ F++ + + G +++ V Sbjct: 99 LTWHPGT---DEVRGWSPDGKSVLFTSRRDIAHNRTGQLFSVAI--QGGFPTKVMEAVVS 153 Query: 389 DSNLQAPTWSPSGRSLIFS------------RKKDGDTGSKLYSIDLNGRNETLINTPAY 436 D + A G L ++ R G T ++ DLN + + + Sbjct: 154 DGKMNA-----DGSKLAYNPERLAHGGKNGWRNHRGGTTPPVWIYDLNKNSYVEVPHGNF 208 Query: 437 A-SDPQWVG 444 + S P WVG Sbjct: 209 SDSSPMWVG 217 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 10/127 (7%) Query: 242 MDTRIDRAPKRIGNFRSM---ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +D ++D P+R F+ + + + S+ GK+ L+S + + ++SV ++ +T LT Sbjct: 284 IDIKVD-LPQRRTQFKDAMPSLSSSQISATGKQVLLSARGE----VFSVPVKDGSTYNLT 338 Query: 299 NTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE-ASYFDPVWSP 356 NT N A +SP QI + +D+ G +L + G QK + K A ++ W P Sbjct: 339 NTSGQNERDALWSPLGEQIAYITDKGGDYRLVLADQFGEVQKTLDLGKHTADFYLFSWMP 398 Query: 357 QGDLIAF 363 G I F Sbjct: 399 DGKHIVF 405 >gi|68349584|gb|AAY96687.1| protein kinase/protein beta WD-40 repeat [uncultured bacterium BAC10-4] Length = 940 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 20/179 (11%) Query: 249 APKRIGNFRSMILAPR-FSSNGKRALISV-QKDEAMDIYSVDLQSNATER---LTNTLFI 303 AP+RI + L+P S +G+ A SV + + D++ DL++ A R T Sbjct: 739 APERILTVPGIWLSPSSVSHDGRFATFSVFAMNSSHDVWVADLEARAEPRARPFVATADN 798 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIA 362 SA+++PD I + ++ G E +YV + D+K RIS A WS G + Sbjct: 799 EFSAAFAPDGRAIAYTTNETGDENIYVRRFPEGDRKVRISV---AGGQGAQWSRDGSELF 855 Query: 363 FTKFSGEKFAIGVMKKDG----SQERLLVEDSNLQA----PTW--SPSGRSLIFSRKKD 411 + G+ A+ +++KDG + +L E L + P++ SP R + +R+ + Sbjct: 856 YQSPDGKLMAV-LVRKDGGLSFGEPHVLFEGPYLTSIDIGPSYAVSPDSRRFLMARQSN 913 >gi|325106751|ref|YP_004267819.1| hypothetical protein Plabr_0167 [Planctomyces brasiliensis DSM 5305] gi|324967019|gb|ADY57797.1| hypothetical protein Plabr_0167 [Planctomyces brasiliensis DSM 5305] Length = 335 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 26/194 (13%) Query: 262 APRFSSNGKRALISVQKDE------------AMDIYSVDLQSNATERLTNTLFINISASY 309 +P SS+G + L+ ++ E + D+Y++D+ +RLT+ + ISA + Sbjct: 135 SPSLSSDGSK-LVFIRATELRDYSMGGKIWDSWDVYTIDIDGKNEQRLTSEEYGMISAPF 193 Query: 310 SPDSSQIVFESDREGKEQLYVMQ-SNG--SDQKRISQDKEA-----SYFDPVWSPQGDLI 361 ++ +VF ++ +G +L + NG S + + +K A S DP D + Sbjct: 194 YLENDTVVFAAEVDGNMKLLTLDLGNGLTSSEVQYVDNKIAGIHGNSQSDPSPYMHSDRL 253 Query: 362 AFT----KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 AF K S ++ I + D + +++ PTWSP G+ L + D Sbjct: 254 AFVFSDKKESPFQYEIWSLHLSDNTVQQVTSSGHKNSDPTWSPDGKMLFYLSDPQRDRRF 313 Query: 417 KLYSIDLNGRNETL 430 ++ ID++G NE++ Sbjct: 314 EIRKIDVDGTNESV 327 >gi|148262153|ref|YP_001228859.1| APHP domain-containing protein [Geobacter uraniireducens Rf4] gi|146395653|gb|ABQ24286.1| APHP domain protein [Geobacter uraniireducens Rf4] Length = 1951 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 22/218 (10%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P ++ K+A YD R+ + D + P +S++G + + + Sbjct: 124 PVWNAAGDKIAMQFYDSRGNDRIAVFDVHTVKMTPLTAGLYVYEQTPAWSADGTKVIFTS 183 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSP----DSSQIVFESDREGKEQLYVMQ 332 K+ +I+S DL S A ++T+ +F +Y+P D S+I F L V+ Sbjct: 184 NKNGYQEIWSKDLISGAETQVTHGVF-----AYNPKPSQDGSRIAFFD----GSTLKVID 234 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI---GVMKKDGSQERLLVED 389 + + + ++ WS G I+F G ++I +M S+ V Sbjct: 235 LQTAVTTLVGTANQNTHN---WSADGKRISFRANKGTGYSIFSYDLMTGQTSEVAASVHY 291 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 S + P+WSP G ++F++ + G G L + L G + Sbjct: 292 SII--PSWSPDGSEILFAKAEPGG-GYALLASTLTGES 326 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 18/146 (12%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA----SYFDPVWSPQGDLI 361 S S+S S I F D G Y + +N +K +S E S +PVW+ GD I Sbjct: 77 SKSFSFSGSDIAFSLD--GTSAAYTLFNN-VYEKNLSTGVETLLAESARNPVWNAAGDKI 133 Query: 362 AFTKFSGEK------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 A + F + +K L V + Q P WS G +IF+ K+G Sbjct: 134 AMQFYDSRGNDRIAVFDVHTVKMTPLTAGLYVYE---QTPAWSADGTKVIFTSNKNGY-- 188 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQ 441 +++S DL ET + +A +P+ Sbjct: 189 QEIWSKDLISGAETQVTHGVFAYNPK 214 >gi|1335976|gb|AAB01192.1| apical gut membrane polyprotein [Haemonchus contortus] Length = 822 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 27/172 (15%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK+ + + ++ +D++ D+ +LT + AS+SPD +IVF + R Sbjct: 183 SPDGKKIVYTSKQSGDLDLWITDINGALKIQLTKAKGYDGGASFSPDGEKIVFHASRPTT 242 Query: 326 E--------------------QLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFT 364 + +LYVM ++G D++ + Q + + P + P I F+ Sbjct: 243 KDKIDIYDHLLENDLVAMSEMELYVMNADGIDKRSVFKQPRGGLNWTPYYHPDNKRIIFS 302 Query: 365 KFSG----EKFAIGVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 + +F + ++ +DG+ ER+ A P +S G+ +++S + Sbjct: 303 SNTNSTKPSEFHLYIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNR 354 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ V+ N ++LT+ N A SPD I F S R G +L+ M ++G++ ++ Sbjct: 553 FDIFMVNKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGTNLHQV 612 Query: 342 SQDKEASYFDPV-WSPQGDLIAF 363 + KE Y +SP G + F Sbjct: 613 T--KEYGYDGGCFFSPDGKRLVF 633 >gi|109898138|ref|YP_661393.1| peptidase S9, prolyl oligopeptidase active site region [Pseudoalteromonas atlantica T6c] gi|109700419|gb|ABG40339.1| peptidase S9, prolyl oligopeptidase active site region [Pseudoalteromonas atlantica T6c] Length = 692 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 271 RALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + +Q D+ +I+ VD ++N +TN L + S + SPD S++ + S G Q++ Sbjct: 60 RNYMDIQNDKKRGNIWKVD-KNNVMTPVTNGLHADFSPTLSPDESKLAYISTASGSAQIH 118 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVM-KKDGSQ---E 383 + N +++ S + WSP G ++AF++F K + + K +G++ Sbjct: 119 IKWLNTGQTGQMTH-LTGSPSNLSWSPDGKMLAFSQFVKGTPKSPVNLSGKPEGAKWADS 177 Query: 384 RLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + ++D +A + P+G + IF DG T +L + N Sbjct: 178 AIFIDDLFYRADGAGYIPAGNNQIFVLSADGGTPRQLTQGEFN 220 >gi|269837019|ref|YP_003319247.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786282|gb|ACZ38425.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 665 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + D I+ V + R T+ + +SPD S+I F S+R GK Q++++ +G Sbjct: 45 KNDYRSSIFVVPVDGGTPRRFTSADARDSFPRWSPDGSRIAFLSNRTGKSQVWMISVDGG 104 Query: 337 DQKRISQDKEA-SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + +++ E +YF WSP G +A + A + K++G +E Sbjct: 105 EATQVTDLPEGVTYF--AWSPDGSTLALVS---KTEAAQLEKREGDEE 147 >gi|209966436|ref|YP_002299351.1| acylaminoacyl peptidase, putative [Rhodospirillum centenum SW] gi|209959902|gb|ACJ00539.1| acylaminoacyl peptidase, putative [Rhodospirillum centenum SW] Length = 710 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 26/194 (13%) Query: 263 PRFSSNGK-----RALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +GK R + + KD A+ ++ VD + + L A +SPD +I Sbjct: 54 PQISPDGKQIVYARVGMDIMKDRAVPTLWVVDHEGRSHRPLLPGRVPASLARWSPDGGRI 113 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP---VWSPQGDLIAFT---KFSGEK 370 + G+ Q++V + ++ E DP WSP G +AFT K G+ Sbjct: 114 AYVQAEGGQRQIHVRWMDTGQTATVTHLTE----DPDNLAWSPDGRWLAFTMLVKAEGKP 169 Query: 371 FAIGVMKKDGSQ--ERLLVEDSNL---QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 K DG++ ++ V DS + + GR +F +G T +L S D + Sbjct: 170 LGTMPPKPDGAEWAPKVKVVDSMVYRADGAGFLEQGRHHLFVVPAEGGTPRQLTSGDFDH 229 Query: 426 RNETLINTPAYASD 439 R + PA+ D Sbjct: 230 RGQ-----PAWLPD 238 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 20/163 (12%) Query: 284 IYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV--------FESDREGKEQLYVMQSN 334 ++ V + +LT+ F + ++ PD S I+ +E+D ++ V + Sbjct: 209 LFVVPAEGGTPRQLTSGDFDHRGQPAWLPDGSAIIIAANRNPDWETDPLNQDLHEVSVKD 268 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----IGVMKKDGSQERLLVE- 388 G+ + ++ S DP SP G IAFT F ++ + V+ + + R L E Sbjct: 269 GTIRTLTTRKGPDS--DPAVSPDGRYIAFTGFEDQRRGYHNSRLSVLDRRTGEIRTLTEG 326 Query: 389 -DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 D ++ AP W+ G++++ S + G+ L I L+GR E L Sbjct: 327 LDRSVDAPAWTDEGKAILVSYEDRGNM--VLARIGLDGRREVL 367 >gi|218128507|ref|ZP_03457311.1| hypothetical protein BACEGG_00077 [Bacteroides eggerthii DSM 20697] gi|217989398|gb|EEC55711.1| hypothetical protein BACEGG_00077 [Bacteroides eggerthii DSM 20697] Length = 1086 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 14/109 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S NGK ++ D +Y + T+++TNT ++PD +V+ S+R G Sbjct: 322 LSPNGKEVAFVLRGD----VYVTSVDYKTTKQVTNTPCQERGVDFAPDGRSLVYASERGG 377 Query: 325 KEQLYVMQSNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAF 363 QLY D+K + + EA+ F P +SP G +AF Sbjct: 378 LWQLYTSAIVRKDEKLFTYATELKEERLTNSEAASFQPQYSPDGKEVAF 426 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + +LT + +SPD +I F SDR G +Y++ G + +R++ Sbjct: 45 DIYTVPVDGGRAMQLTTNPAHDTEPVWSPDGKRIAFASDRMGSMDVYIVSKEGGEPRRLT 104 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 18/125 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD + I F K +Y + +G +++ + A +PVWSP G IAF Sbjct: 29 CAISPDGTTIAFTY----KGDIYTVPVDGGRAMQLTTNP-AHDTEPVWSPDGKRIAFASD 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + ++ K+G + R L S + P + FS D G L+S D+ Sbjct: 84 RMGSMDVYIVSKEGGEPRRLTTHSGSETP--------VAFS-----DAGHILFSADIMPS 130 Query: 427 NETLI 431 ET++ Sbjct: 131 AETVL 135 Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 25/122 (20%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRID-RAPKRIGNFRSMILAPRFSSNGKRALI 274 E SPN ++VA+ +LR + T +D + K++ N F+ +G+ + Sbjct: 319 EMALSPNGKEVAF-------VLRGDVYVTSVDYKTTKQVTNTPCQERGVDFAPDGRSLVY 371 Query: 275 S--------------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + V+KDE + Y+ +L+ ERLTN+ + YSPD ++ F Sbjct: 372 ASERGGLWQLYTSAIVRKDEKLFTYATELKE---ERLTNSEAASFQPQYSPDGKEVAFLE 428 Query: 321 DR 322 +R Sbjct: 429 NR 430 >gi|271965515|ref|YP_003339711.1| hypothetical protein Sros_4060 [Streptosporangium roseum DSM 43021] gi|270508690|gb|ACZ86968.1| hypothetical protein Sros_4060 [Streptosporangium roseum DSM 43021] Length = 1059 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 18/173 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ V + RLT + +SP Q+ F EG E++YVM ++G +RI+ Sbjct: 22 DLWMVPVTGGRAFRLTAGVAEAGYPRFSPCGDQLAFAGREEGPEEVYVMPADGGAARRIT 81 Query: 343 QDKEASYFDPVWSPQGDLIAFT----KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 S W P G ++ + F G+K+ + + DG ERL +N + ++ Sbjct: 82 YHGARSTVT-GWDPDGAVLYASDESQPFEGQKW-LHRIHPDGIPERLPYGPAN--SISYG 137 Query: 399 PS---GRSLI----FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P GR+ + R + G G + R LI P + P W G Sbjct: 138 PQIVLGRNTADPARWKRYRGGTVGDLWIGTEEFRR---LIALPGNLASPCWAG 187 >gi|20090399|ref|NP_616474.1| hypothetical protein MA1540 [Methanosarcina acetivorans C2A] gi|19915408|gb|AAM04954.1| predicted protein [Methanosarcina acetivorans C2A] Length = 618 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 23/220 (10%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRAP 250 L ++DRDG ++ LT + D++ +S + +K+AY+ + ++ +++++ Sbjct: 224 LYLIDRDGYVLQKLTDTSDRVE-TAIWSNDGKKIAYSITGPNKDEETGLWIINENRTEDN 282 Query: 251 KRIGNFRSMILAPR----FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + N + +P F + L S++ D ++ S R+ + L Sbjct: 283 RLVDNGIVIAWSPDDSRIFYVDANSGLYSIKADGTDEVQ----LSTGFSRIDDVL----- 333 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD ++F + + +++ G + K + + F P WSP+GD IA + Sbjct: 334 -SFSPDGKNLIFSTVNDEGVTMFLADQTGKNAKVLEEFPGYIIFKPSWSPKGDKIAHAQD 392 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + DGS++ L+ S + W PSG + F Sbjct: 393 DN----LYTINPDGSEKSLIA--SAITDYEWHPSGDFISF 426 >gi|325300410|ref|YP_004260327.1| peptidase S41 [Bacteroides salanitronis DSM 18170] gi|324319963|gb|ADY37854.1| peptidase S41 [Bacteroides salanitronis DSM 18170] Length = 1083 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V Q +LT + +SPD +++ F S REG +YV+ +G KRI+ Sbjct: 45 DIYTVSAQGGRATQLTTNAAYDTRPVWSPDGTRLAFASSREGSLDVYVISKDGGTPKRIT 104 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 21/180 (11%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ T ++T+T +SPD +V+ S+R G Q+Y D+K + Sbjct: 337 DVFVTSSDYKTTRKITDTPEQERDLDFSPDGRSLVYSSERGGLWQVYQASLTVKDEKLFT 396 Query: 343 ----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK------DGSQERLL 386 D A+ F P +SP G +AF + + + K DG E Sbjct: 397 YATGIKEERLTDNTATSFQPQYSPDGKKVAFLENRTTLRVLNLEDKSVCTVMDGKYEYSY 456 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASDPQWV 443 + Q WSP R L+ G +K L S NG L + ++ +WV Sbjct: 457 SDGD--QWFEWSPDSRWLLSGYIGTGGWNNKDVALASASGNGEIHNLTESGYTDTNAKWV 514 >gi|116626580|ref|YP_828736.1| periplasmic component of the Tol biopolymer transporter-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116229742|gb|ABJ88451.1| Periplasmic component of the Tol biopolymer transport system-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 507 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +GK Q+D ++ V + A +RLT+ + + YSPD I F SDR G Sbjct: 338 WSPDGKWLAFVGQRDGKFTLFRVPVTGGAEQRLTSHGYDD-GPEYSPDGKWIYFNSDRSG 396 Query: 325 KEQLYVMQSNGSD-----QKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 ++ M +G+ +R++ D+ +F P +SP G ++ F+ G K Sbjct: 397 GWDIWRMPVDGAGTDDAKAQRVTSDELEDWF-PHFSPNGKWMLVFSFPKGTK 447 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + Q+++ S+GS R+ SYF WSP G +AF KF + + G E+ Sbjct: 311 QSQVWLANSDGSG-ARLMTPPAPSYFH-GWSPDGKWLAFVGQRDGKFTLFRVPVTGGAEQ 368 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 L P +SP G+ + F+ + G G ++ + ++G Sbjct: 369 RLTSHGYDDGPEYSPDGKWIYFNSDRSG--GWDIWRMPVDG 407 >gi|302530195|ref|ZP_07282537.1| predicted protein [Streptomyces sp. AA4] gi|302439090|gb|EFL10906.1| predicted protein [Streptomyces sp. AA4] Length = 1102 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 11/112 (9%) Query: 308 SYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + SPD S+I + E DR V S+G ++ + +A+ P WSP G Sbjct: 20 ALSPDGSRIAYVVRTADREEDRNVDALWTVGASSGEARQLTRGNADAA---PKWSPDGSR 76 Query: 361 IAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +AF + + V+ DG + E+L AP WSP G + FS D Sbjct: 77 LAFLRAQDGPPQVWVLPADGGEAEQLTKLPLGAGAPVWSPDGSKIAFSSAID 128 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 49/256 (19%) Query: 216 EPRFSPNQQKVAYA--TYDDEDILRV-YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +P SP+ ++AY T D E+ V L R + AP++S +G R Sbjct: 18 QPALSPDGSRIAYVVRTADREEDRNVDALWTVGASSGEARQLTRGNADAAPKWSPDGSRL 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-------------- 318 +D ++ + E+LT + +SPD S+I F Sbjct: 78 AFLRAQDGPPQVWVLPADGGEAEQLTKLPLGAGAPVWSPDGSKIAFSSAIDLAAVVEAPP 137 Query: 319 ------------ESDREG-----KEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDL 360 +SD G + ++V+ + G Q+ D A P WSP G Sbjct: 138 ENTPIVAERLDYKSDGPGLLKTLRSHVHVLDVATGEVQQHTFGDWHAG--QPAWSPDGTH 195 Query: 361 IAFTK---------FSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKK 410 +AFT F + + V +++ ++ RL+ D + W+ G++L+ + Sbjct: 196 VAFTAALDDDADLTFRSAAYVLDVTERN-AEPRLVGTDQGMAGTVGWTKDGKALLVVGRT 254 Query: 411 DGDTGS-KLYSIDLNG 425 D TG L + L+G Sbjct: 255 DTATGHLGLLRVPLDG 270 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 352 PVWSPQGDLIAFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 P SP G IA+ + ++ A+ + + R L + AP WSP G L Sbjct: 19 PALSPDGSRIAYVVRTADREEDRNVDALWTVGASSGEARQLTRGNADAAPKWSPDGSRLA 78 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 F R +DG + D G E L P A P W Sbjct: 79 FLRAQDGPPQVWVLPAD-GGEAEQLTKLPLGAGAPVW 114 >gi|296331793|ref|ZP_06874260.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675817|ref|YP_003867489.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151118|gb|EFG92000.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414061|gb|ADM39180.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 657 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 8/118 (6%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYSVDL-----QSNATERLTNTLFINISASYSPDSSQI 316 P+++ +G RA + Q ++ D Y+ ++ +S + T+ +SPD + Sbjct: 19 PQYAPDGSRAAYVQSQVNQEKDSYTSNIWVYETKSGGSVPWTHGEKRCTDPRWSPDGRTL 78 Query: 317 VFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 F SDR+G QLY+M + G + ++++ D P+WSP G+ + GE +I Sbjct: 79 AFISDRDGDAAQLYIMSAEGGEARKLT-DIPYGVSKPIWSPDGESVLVIVSLGEGESI 135 Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 23/112 (20%) Query: 309 YSPDSSQIVFESDREGKEQ--------LYVMQSNGS-----DQKRISQDKEASYFDPVWS 355 Y+PD S+ + + +E+ +Y +S GS +KR + DP WS Sbjct: 21 YAPDGSRAAYVQSQVNQEKDSYTSNIWVYETKSGGSVPWTHGEKRCT--------DPRWS 72 Query: 356 PQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLI 405 P G +AF + G+ + +M +G + R L + + P WSP G S++ Sbjct: 73 PDGRTLAFISDRDGDAAQLYIMSAEGGEARKLTDIPYGVSKPIWSPDGESVL 124 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 16/152 (10%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +PR+SP+ + +A+ + D D ++Y+M A +++ + + P +S +G+ L+ Sbjct: 68 DPRWSPDGRTLAFISDRDGDAAQLYIMSAEGGEA-RKLTDIPYGVSKPIWSPDGESVLVI 126 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISA---SYSPDSSQIVFESDREGKEQLYVMQ 332 V E I N E+ F + +Y D + R QL ++ Sbjct: 127 VSLGEGESI-------NDREKTEPDSFEPVEVQGLAYKRDGKGLT----RGAYAQLVLVS 175 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + K+++ K A + DP +SP G + F+ Sbjct: 176 VKSGEVKQLTNHK-ADHGDPAFSPDGKWLVFS 206 >gi|332664564|ref|YP_004447352.1| WD40-like beta Propeller containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333378|gb|AEE50479.1| WD40-like beta Propeller containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 1022 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 13/132 (9%) Query: 303 INISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEAS---YFD-----P 352 +NIS S SPD ++F S+R + +NG K ++ + +FD Sbjct: 294 MNISPSISPDGKYVLFTSERNLFSTDIFLADATNGQIMKTVASTARSGNVDFFDFLESSG 353 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRK 409 WSP +A F + + + + + ++LQA PTWSP G++++ S Sbjct: 354 AWSPDSKRVAVVGFKRGRNVLLIKSPFTGKTLDELAPADLQAFSNPTWSPDGKTIVVSGL 413 Query: 410 KDGDTGSKLYSI 421 K+G T Y+I Sbjct: 414 KEGHTDLYAYNI 425 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 154 IAHTIS-DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 I+ +IS D Y T E+ F++ I + +G I ++ R G N+ + D Sbjct: 296 ISPSISPDGKYVLFTSERNLFSTDIFLADAT--NGQIMKTVASTARSG-NVDFF----DF 348 Query: 213 ILFEPRFSPNQQKVAYATYD-DEDILRV---YLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + +SP+ ++VA + ++L + + T + AP + F + P +S + Sbjct: 349 LESSGAWSPDSKRVAVVGFKRGRNVLLIKSPFTGKTLDELAPADLQAFSN----PTWSPD 404 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 GK ++S K+ D+Y+ ++++ ++LT+ + I ++++ D + F +D++ E Sbjct: 405 GKTIVVSGLKEGHTDLYAYNIRTRTLKQLTDDKYSEIQSTWAEDGQTLFFSTDQKAWE 462 >gi|162456252|ref|YP_001618619.1| hypothetical protein sce7969 [Sorangium cellulosum 'So ce 56'] gi|161166834|emb|CAN98139.1| hypothetical protein sce7969 [Sorangium cellulosum 'So ce 56'] Length = 1017 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 262 APRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +P FS +GKR SV DI VD+ + ++T +++ +SPD + F S Sbjct: 486 SPSFSPDGKRLAYSVWTAGGYRDIRVVDVATGGFRQVTRDRATDMNPVWSPDGETLYFTS 545 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 DR G +Y + ++++ + + P SP G + + ++ + M D Sbjct: 546 DRTGIHNVYAYDVSSGALRQVTNVRLGA-LHPAISPDGKTLVYVGYTSRGHDLFAMPLD 603 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Query: 193 LCVMDRDGA--NIRYLTPS-RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + RDGA R L PS R + + P FSP+ +++AY+ + + ++D Sbjct: 460 IARLSRDGALSERRDLVPSARFEQAYSPSFSPDGKRLAYSVWTAGGYRDIRVVDVATG-G 518 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ R+ + P +S +G+ + + ++Y+ D+ S A ++TN + + Sbjct: 519 FRQVTRDRATDMNPVWSPDGETLYFTSDRTGIHNVYAYDVSSGALRQVTNVRLGALHPAI 578 Query: 310 SPDSSQIVFESDREGKEQLYVM 331 SPD +V+ L+ M Sbjct: 579 SPDGKTLVYVGYTSRGHDLFAM 600 >gi|294672803|ref|YP_003573419.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] gi|294472399|gb|ADE81788.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] Length = 1080 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 23/181 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++Y T R+T+T + + S+SPD + + S+R G +Y D+K+ + Sbjct: 333 EVYVTATDYKTTRRITDTPELERNLSFSPDGRSLAYASERNGCWNIYQTTIKNKDEKQFT 392 Query: 343 ----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + F P +SP +AF + G I + K + R +++ +L Sbjct: 393 YATDLTEEQLTKQNHTSFYPRYSPDSKELAFFEDRGTIRIINLATK---KIRTVMDGKDL 449 Query: 393 QAPT-------WSPSGRSLIFSRKKDGD-TGSKLYSIDLNGRNE--TLINTPAYASDPQW 442 + + WSP R L+ + DG + ID +G+ + L N+ Y +P W Sbjct: 450 FSYSDGDIDFEWSPDSRWLLATYYGDGGYHHDDIALIDASGKQKPYNLTNSSYYDMNPHW 509 Query: 443 V 443 V Sbjct: 510 V 510 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++V + ++LT + + +SPD S+I F SDREG ++VM S G ++I+ Sbjct: 45 DLFTVPVTGGTAKQLTTNPAYDYNPVWSPDGSKIAFASDREGGINVWVMPSKGGQPQQIT 104 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD I F K L+ + G K+++ + Y +PVWSP G IAF Sbjct: 32 SPDGQTIAFSY----KGDLFTVPVTGGTAKQLTTNPAYDY-NPVWSPDGSKIAFASDREG 86 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ 393 + VM G Q + + S+ + Sbjct: 87 GINVWVMPSKGGQPQQITTSSHFK 110 >gi|160890688|ref|ZP_02071691.1| hypothetical protein BACUNI_03133 [Bacteroides uniformis ATCC 8492] gi|156859687|gb|EDO53118.1| hypothetical protein BACUNI_03133 [Bacteroides uniformis ATCC 8492] Length = 1111 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT + ++PD +V+ S+R G QLY D+K + Sbjct: 362 DVYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKLFT 421 Query: 343 QDKE----------ASYFDPVWSPQGDLIAF 363 E A+ F P +SP G IAF Sbjct: 422 YATELKEERLTNSDAASFQPQYSPDGKEIAF 452 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + ++T + + +SPDS +I F SDR G +Y++ +G + +R++ Sbjct: 71 DIYTVPVAGGRAMQITTNPAYDTAPVWSPDSKRIAFASDRMGSLDVYIVAKDGGEPRRLT 130 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +P +AFT F+ G+M Sbjct: 131 THSGSE------TP----LAFTDAGHVLFSAGIM 154 >gi|78777595|ref|YP_393910.1| translocation protein TolB [Sulfurimonas denitrificans DSM 1251] gi|78498135|gb|ABB44675.1| putative tonB-independent protein-uptake protein [Sulfurimonas denitrificans DSM 1251] Length = 417 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 67/302 (22%), Positives = 132/302 (43%), Gaps = 37/302 (12%) Query: 124 LRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGD--FNSRILFV 180 L V+ +L++ K+ + K + +S + +AHTI+ DI S GE +++F Sbjct: 103 LNVDIKLFN-KEGSIVFNKNYKVNSSDIYMFVAHTIAYDI-NSFMGESPIEWIKRKVIFS 160 Query: 181 -------SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 SE VV+ V+ + G N LF P+++ +Q Y T + Sbjct: 161 RMLSPQRSELVVTDYTLTYQHVIVKGGFN-----------LF-PKWANKEQSAFYYTSLN 208 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 E + +D + ++ K I + M++ + +G + L ++ + DI+ D+++ Sbjct: 209 ETKPTLKYLDLKTGKS-KVIKSSDGMMICSDINEDGSKLLFTMAPNGQPDIFLYDIKTQN 267 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDP 352 T++LTN I++ + D S ++F SDR G ++ + +GS ++ + K S Sbjct: 268 TKKLTNYGGIDVGGQFMGDDS-VIFVSDRLGYPNVFSLNIKSGSVEQIVYYGKSNS---- 322 Query: 353 VWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 S G + + FS F + ++ + R L + P +S G ++IF Sbjct: 323 ACSVHGKYVVYKARESSDSFSNNTFNLHLVSMESDFVRRLTAVGVNEFPKFSVDGDAVIF 382 Query: 407 SR 408 + Sbjct: 383 VK 384 >gi|284106150|ref|ZP_06386248.1| WD40-like Beta Propeller protein [Candidatus Poribacteria sp. WGA-A3] gi|283830085|gb|EFC34353.1| WD40-like Beta Propeller protein [Candidatus Poribacteria sp. WGA-A3] Length = 245 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 39/165 (23%) Query: 195 VMDRDGANIR------------YLTPSRDQILF------------EPRFSPNQQKVAYAT 230 VMD +G NI Y P ++L+ +P+ P + V Sbjct: 86 VMDLEGENIHRVSTGYGTTTCGYFFPGGRRVLYSSTHLAGLQCPPKPKRGPKYRWV---- 141 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 DD DI L + R G ++P NG++ + + +D +D+Y++++ Sbjct: 142 LDDHDIFSARLDGRELQRLTFSPGYDAEATVSP----NGRKVVFTSVRDGDIDLYAMNID 197 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFES-------DREGKEQL 328 +RLT+ + + A YSPDS +IV+ + +RE ++L Sbjct: 198 GTGVKRLTDDVGYDGGAFYSPDSKRIVYRAQHPKTPEEREAYQEL 242 >gi|270295783|ref|ZP_06201983.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273187|gb|EFA19049.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1097 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT + ++PD +V+ S+R G QLY D+K + Sbjct: 348 DVYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKLFT 407 Query: 343 QDKE----------ASYFDPVWSPQGDLIAF 363 E A+ F P +SP G IAF Sbjct: 408 YATELKEERLTNSDAASFQPQYSPDGKEIAF 438 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + ++T + + +SPDS +I F SDR G +Y++ +G + +R++ Sbjct: 57 DIYTVPVAGGRAMQITTNPAYDTAPVWSPDSKRIAFASDRMGSLDVYIVAKDGGEPRRLT 116 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +P +AFT F+ G+M Sbjct: 117 THSGSE------TP----LAFTDAGHVLFSAGIM 140 >gi|254458984|ref|ZP_05072407.1| protein TolB [Campylobacterales bacterium GD 1] gi|207084255|gb|EDZ61544.1| protein TolB [Campylobacterales bacterium GD 1] Length = 416 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 17/260 (6%) Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 ++HTI+ DI + + ++ R + S V K + + D A + I Sbjct: 132 VSHTIAYDINEFMGAPSVEWMKRRVIFSRVVAPQ--KTEVVISDYTLAYQHTVVKGGFNI 189 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P+++ N Q Y T DE + +D + ++ K I + M++ S NGK+ L Sbjct: 190 F--PKWANNAQNAFYYTSLDEKKPTLKYVDIKTGKS-KAIISSDGMMICSDVSRNGKKLL 246 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ- 332 +++ D+Y D+ + T++LT I+++A + DS IVF S R G ++ + Sbjct: 247 LTMAPKGQPDVYLYDVDTFKTQQLTTYGGIDVNAQFM-DSETIVFISGRLGYPNVFSKKI 305 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAF------TKFSGEKFAIGVMKKDGSQERLL 386 + S ++ + K S S G+ I + FS F + ++ R L Sbjct: 306 GSNSVEQMVYYGKSNS----ACSTHGEYIVYKARESSNAFSTNTFNLHLISTKTDFIRRL 361 Query: 387 VEDSNLQAPTWSPSGRSLIF 406 + P +S G +++F Sbjct: 362 TATGVNEFPRFSIDGDAILF 381 >gi|149174001|ref|ZP_01852629.1| probable TolB protein (Precursor) [Planctomyces maris DSM 8797] gi|148846981|gb|EDL61316.1| probable TolB protein (Precursor) [Planctomyces maris DSM 8797] Length = 309 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 25/157 (15%) Query: 306 SASYSPDSSQIVFES--DREGKE----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S ++SPD S++ + +EG+ ++ V ++GSD K I S+ SP G+ Sbjct: 62 SPTFSPDGSKLAHDCWKSQEGETFSNVKIMVANADGSDPKIIGAGAMPSF-----SPGGN 116 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 I F++ S AI M DGS R L+E A WSP G+ + + G ++Y Sbjct: 117 RIVFSQPSPSGVAI--MNADGSN-RTLIESGAWGA-QWSPDGKKIAYRAYTSGKANLRIY 172 Query: 420 SIDLNGRNETLI--NTP--------AYASDPQWVGFM 446 + + R + +P A++ D WV F+ Sbjct: 173 DLIEDTRFDVFPEGESPYSVISWNMAWSPDSNWVCFL 209 >gi|329889327|ref|ZP_08267670.1| prolyl oligopeptidase family protein [Brevundimonas diminuta ATCC 11568] gi|328844628|gb|EGF94192.1| prolyl oligopeptidase family protein [Brevundimonas diminuta ATCC 11568] Length = 698 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 40/174 (22%) Query: 284 IYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++ V Q +LT+ F + S+S DS + ++R D +R + Sbjct: 211 VFVVGSQGGGARQLTHGDFHHGGGLSWSADSRTLYLSANRR------------PDWQREA 258 Query: 343 QDKEASYFD------------------PVWSPQGDLIAFTKFSGEKFA-----IGVMKKD 379 D E D PV SP G IA+ + ++ + VM D Sbjct: 259 ADSEVFALDVQTGGLTALTSRAGPDNAPVASPDGRRIAYLGYDDKRMGYHNTRLYVMDAD 318 Query: 380 GSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 GS R L E D ++Q+P WS GRS+ + G T K+ + ++G TLI Sbjct: 319 GSNSRALTESLDRSVQSPVWSRDGRSVYVAYDDQGRT--KVARVSMDGAVTTLI 370 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%) Query: 280 EAMD--IYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKE--QLYVMQ 332 EA D ++++D+Q+ LT+ + + SPD +I + + R G +LYVM Sbjct: 257 EAADSEVFALDVQTGGLTALTSRAGPDNAPVASPDGRRIAYLGYDDKRMGYHNTRLYVMD 316 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQG 358 ++GS+ + +++ + S PVWS G Sbjct: 317 ADGSNSRALTESLDRSVQSPVWSRDG 342 >gi|317479784|ref|ZP_07938904.1| hypothetical protein HMPREF1007_02020 [Bacteroides sp. 4_1_36] gi|316903990|gb|EFV25824.1| hypothetical protein HMPREF1007_02020 [Bacteroides sp. 4_1_36] Length = 1085 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT + ++PD +V+ S+R G QLY D+K + Sbjct: 336 DVYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKLFT 395 Query: 343 QDKE----------ASYFDPVWSPQGDLIAF 363 E A+ F P +SP G IAF Sbjct: 396 YATELKEERLTNSDAASFQPQYSPDGKEIAF 426 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + ++T + + +SPDS +I F SDR G +Y++ +G + +R++ Sbjct: 45 DIYTVPVAGGRAMQITTNPAYDTAPVWSPDSKRIAFASDRMGSLDVYIVAKDGGEPRRLT 104 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +P +AFT F+ G+M Sbjct: 105 THSGSE------TP----LAFTDAGHVLFSAGIM 128 >gi|326532988|dbj|BAJ89339.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 654 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%) Query: 308 SYSPDSSQIVFESDREGKEQLYVM-QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SP +VF S R G + LY++ + G + R D E P WSP G+LIAF+ Sbjct: 458 AVSPCGRWVVFRSGRSGHKNLYIVDAARGEETIRRVTDGEWIDTMPSWSPDGELIAFSSN 517 Query: 367 SGEK-----FAIGVMKKDGSQERLL----------VEDSNLQAPTWSPSGRSLIFSRKKD 411 E F+I +++ DG+ R + + + +SP G+ L+F+ Sbjct: 518 RHEPANAAVFSIYLVRPDGTGLRRVHVAGPAGSAEADKERINHVCFSPDGQWLLFTANLG 577 Query: 412 G 412 G Sbjct: 578 G 578 >gi|313681097|ref|YP_004058836.1| peptidase s9 prolyl oligopeptidase active site domain protein [Oceanithermus profundus DSM 14977] gi|313153812|gb|ADR37663.1| peptidase S9 prolyl oligopeptidase active site domain protein [Oceanithermus profundus DSM 14977] Length = 600 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 10/138 (7%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT SPD +++V+ EG++ L V ++ R+ Y P WSP Sbjct: 94 LTPPFGAAADPQPSPDGARVVYVHHHEGRDVLAVAGADPDGWPRVWARGADFYMQPAWSP 153 Query: 357 QGDLIAFTK-------FSGEKFAIGVMKKDGSQE-RLLVEDSNLQA--PTWSPSGRSLIF 406 G +A+ + + G + + ++ G E R L + P + P GR L + Sbjct: 154 DGAWLAWVEWDHPNMPWDGARLMLARVEGGGPAEVRQLAGGARTPVFQPLFDPEGRGLFW 213 Query: 407 SRKKDGDTGSKLYSIDLN 424 +G +L +DL Sbjct: 214 IENPEGAEFDRLVRLDLE 231 >gi|308493667|ref|XP_003109023.1| CRE-TAG-10 protein [Caenorhabditis remanei] gi|308247580|gb|EFO91532.1| CRE-TAG-10 protein [Caenorhabditis remanei] Length = 496 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + VD N +RLT+T + SPD ++I F S R G +LYVM ++GS+ +++ + Sbjct: 210 FQVDRYGNFVQRLTDTPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTQVTNE 269 Query: 345 ---KEASYFDP 352 S+F P Sbjct: 270 LGYDGGSFFTP 280 >gi|188578487|ref|YP_001915416.1| transcriptional regulatory protein, C terminal [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522939|gb|ACD60884.1| transcriptional regulatory protein, C terminal [Xanthomonas oryzae pv. oryzae PXO99A] Length = 772 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 11/222 (4%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + P +S +G+ Sbjct: 222 LTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREI 281 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + A E + +S S+SPD+ ++F S G + Sbjct: 282 AFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYGAAR 341 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + ++ +A FD P +SP G I F + + + G+ ERL Sbjct: 342 IRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFLRNPQLGDLWRIPAEGGAAERL 401 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +++ +W P G +IF R+ D + ++LY +DL R+ Sbjct: 402 THDTADIWGWSWLPDGSGVIFGRRVDIE--ARLYRLDLLDRS 441 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQG 358 +++ S SPD + + + S DR G L N R+ + D P WSP G Sbjct: 221 DLTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNA--YPRVLETPAPGVSDRLPAWSPDG 278 Query: 359 DLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 IAF++ S ++E + + +++ + +WSP R+L+F Sbjct: 279 REIAFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYG 338 Query: 415 GSKLYSIDLNGRNETLINTPA----------YASDPQWVGFM 446 +++ ++L +N PA Y+ D W+ F+ Sbjct: 339 AARIRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFL 380 >gi|292492884|ref|YP_003528323.1| hypothetical protein Nhal_2871 [Nitrosococcus halophilus Nc4] gi|291581479|gb|ADE15936.1| WD40 domain protein beta Propeller [Nitrosococcus halophilus Nc4] Length = 358 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 46/231 (19%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DG N+R ++ S + +P+ Q + YA+ +L + P + Sbjct: 87 MDADGKNVRMVS-SGKGVTTCSFIAPDNQSIIYAS--------THLAGEQCPPKP----D 133 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + P + + DI+ D + + RLT+T + A YSP + Sbjct: 134 YSQGYVWPLY--------------KGYDIFRADPEGDNLVRLTDTPGYDAEAVYSPLGDK 179 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDK---EASYF--DPVW------SPQG------ 358 I+F S R G +L+ M +GS ++++ + ++F D W PQG Sbjct: 180 IIFTSVRTGDLELFTMNPDGSGVEQLTDEPGYDGGAFFSRDGQWIVWRASRPQGKALEDY 239 Query: 359 -DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFS 407 L+ + I +M + + L ++ P W P G+ +IFS Sbjct: 240 QHLLKQGLIRPGQLEIFIMNLEERKPIQLTDNGAANFGPYWHPDGKHIIFS 290 >gi|225874088|ref|YP_002755547.1| TolB domain protein [Acidobacterium capsulatum ATCC 51196] gi|225794563|gb|ACO34653.1| TolB domain protein [Acidobacterium capsulatum ATCC 51196] Length = 555 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 13/120 (10%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFTK 365 A++ PD +I++ S + LY+ Q NGSD QK S A + WSP G + FT Sbjct: 121 ATWMPDGQRILYAS----GDNLYIAQLNGSDVQKFASLPGRAFWLR--WSPDGKELRFTL 174 Query: 366 FSGEKFA--IGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + E + + ++ +G+ LL+ +D + +W+ GR +F +K+ GS ++ + Sbjct: 175 LNSETHSSRLWSIRANGNDAHLLLADDDGSECCGSWTADGRDYVF--QKNASEGSNIWVL 232 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 15/140 (10%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------REGKEQLYVMQS 333 +++ S LQ +A+ +L FI + S ++S++ F D R+ L+ + Sbjct: 271 GLNLRSELLQYDASSQL----FIPYAGGIS-NASRVAFSRDGEWVAWFRQDDGSLWRSRR 325 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 NG+++ ++S F WSP LI + G+++ I + DG R++ ++ Sbjct: 326 NGTERLQLSS-GPLDVFMMQWSPDDKKLILMAREPGKRWTIYTLDADGGPLRVVYPENRS 384 Query: 393 QA-PTWSPSGRSLIFSRKKD 411 QA P WSP G+ ++F R D Sbjct: 385 QADPNWSPDGKQIVFGRLPD 404 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 12/121 (9%) Query: 292 NATERL--TNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEAS 348 N TERL ++ +SPD +++ + GK +Y + ++G R+ + S Sbjct: 326 NGTERLQLSSGPLDVFMMQWSPDDKKLILMAREPGKRWTIYTLDADGG-PLRVVYPENRS 384 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-----DGSQERL--LVEDSNLQAPTWSPSG 401 DP WSP G I F + + A M K D + L L L +P WSP G Sbjct: 385 QADPNWSPDGKQIVFGRLP-DLMAEASMPKAIYIYDLASHHLSKLPGSEGLFSPRWSPDG 443 Query: 402 R 402 R Sbjct: 444 R 444 >gi|319647634|ref|ZP_08001852.1| YuxL protein [Bacillus sp. BT1B_CT2] gi|317389975|gb|EFV70784.1| YuxL protein [Bacillus sp. BT1B_CT2] Length = 653 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYS-----VDLQSNATERLTNTLFINISASYSPDS 313 I P++S +G + A + + +E D Y D + A+ + T N +SPD Sbjct: 16 ITDPQYSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQHPRWSPDG 75 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEK 370 + F S+RE Q+YV+ + G + ++++ D P WSP G L+ K + E+ Sbjct: 76 KNLAFTSNREETAQIYVISAAGGEARKVT-DIPYDVSQPEWSPDGKTLLCSVKLTKEE 132 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 20/197 (10%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PR+SP+ + +A+ T + E+ ++Y++ A +++ + + P +S +GK L S Sbjct: 68 HPRWSPDGKNLAF-TSNREETAQIYVISAAGGEA-RKVTDIPYDVSQPEWSPDGKTLLCS 125 Query: 276 VQ--KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQ 332 V+ K+E++D TE + S SY D + GK QL ++Q Sbjct: 126 VKLTKEESVD------DEKKTEIEDHEPLEVDSLSYKADGQGF-----KRGKYTQLVLVQ 174 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD---GSQERLLVED 389 + K+++ D E +F +SP GD IAF + V + G +RL ++ Sbjct: 175 VETGEMKQLT-DLERDHFSHAFSPCGDQIAFCANQTDMRVNDVYLMNLSTGDLKRLTGQN 233 Query: 390 SNLQAPTWSPSGRSLIF 406 + ++SP G+ L F Sbjct: 234 GIFSSLSFSPDGKHLAF 250 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 309 YSPDSSQIVFESDREGKEQ--------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 YSPD ++I + + ++Q +Y + S Q + + P WSP G Sbjct: 21 YSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQH---PRWSPDGKN 77 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK 409 +AFT E I V+ G + R + + ++ P WSP G++L+ S K Sbjct: 78 LAFTSNREETAQIYVISAAGGEARKVTDIPYDVSQPEWSPDGKTLLCSVK 127 >gi|126652129|ref|ZP_01724311.1| hypothetical protein BB14905_10675 [Bacillus sp. B14905] gi|126591037|gb|EAZ85148.1| hypothetical protein BB14905_10675 [Bacillus sp. B14905] Length = 701 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSD----QKRISQDKEASYFDPVWSPQGDLIAFTK 365 SPD Q+V+E KE Y SD +R+ +P+WSP G IAF Sbjct: 22 SPDGQQVVYERTIAVKENNYETHLYLSDVEGKTRRVLTSSGTRNVNPIWSPDGKTIAFIS 81 Query: 366 FSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSL 404 ++ DG + R L + + + W+P+G+++ Sbjct: 82 DRAYGMQAWLLSLDGGEARCLTKFRQGISSIVWAPNGKTI 121 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%) Query: 310 SPDSSQIVFESDREGKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SPD IVF S+ E + ++Y + S+G D K + D EAS P +SP G IAF Sbjct: 209 SPDGEYIVFSSNAENENFLFGGKVYRVSSSGGDAKLLYSDTEAS--SPSYSPDGKWIAFF 266 Query: 365 KFSGEKFAIGVMKKDGSQERLL 386 E+ + V+ +G R L Sbjct: 267 GNHAEQKELLVIPSEGGDVRSL 288 Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust. Identities = 44/237 (18%), Positives = 89/237 (37%), Gaps = 61/237 (25%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 +R + + + +Y D++ LT++ N++ +SPD I F SDR Q + Sbjct: 31 ERTIAVKENNYETHLYLSDVEGKTRRVLTSSGTRNVNPIWSPDGKTIAFISDRAYGMQAW 90 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGD-------LIAFTKFS--GEKFAIGVMKKDG 380 ++ +G + + +++ ++ VW+P G +I ++ E I K + Sbjct: 91 LLSLDGGEARCLTKFRQG-ISSIVWAPNGKTIYGLVPVIVHSELETFHENATIHEAKSEK 149 Query: 381 SQERLLVED------------------------------------------SNLQAPTWS 398 QE L D + + P S Sbjct: 150 EQEDKLWRDGAKRYHHLYYKNDGTGFHKPYKRQIVAIHIDTGTFVLITKGINEVHQPDVS 209 Query: 399 PSGRSLIFSRKKDGDT---GSKLYSIDLNGRNETLI------NTPAYASDPQWVGFM 446 P G ++FS + + G K+Y + +G + L+ ++P+Y+ D +W+ F Sbjct: 210 PDGEYIVFSSNAENENFLFGGKVYRVSSSGGDAKLLYSDTEASSPSYSPDGKWIAFF 266 >gi|333030832|ref|ZP_08458893.1| peptidase S41 [Bacteroides coprosuis DSM 18011] gi|332741429|gb|EGJ71911.1| peptidase S41 [Bacteroides coprosuis DSM 18011] Length = 1079 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 41/213 (19%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL--------FEPRFS 220 E G FN V + + G K L + + +R+LT S+ +L + R Sbjct: 235 EDGSFN-----VYKRNLDGSDKKQLTHLKKH--PVRFLTQSKAGVLCFVYDGEIYTLREG 287 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 QKV R+ ++ + + A K NFR+ S NGK ++ D Sbjct: 288 AEPQKV-----------RIEIITDQQESAVKHF-NFRTGAKEMSVSPNGKEIAFIIRGD- 334 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 I+ ++ T ++TNT S+SPD +++ ++R G +Y + D+K Sbjct: 335 ---IFVTSIEYGTTRQITNTPEQERDVSFSPDGRSLLYAAERNGAWNIYQTTLDIKDEKE 391 Query: 341 I----------SQDKEASYFDPVWSPQGDLIAF 363 D + + F P++SP G +AF Sbjct: 392 FIYAQSFTEEQLTDSDKASFQPLYSPDGKSVAF 424 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A+ SPD S+I F K +Y + S+G +++ A PVWSP G+ IAF Sbjct: 29 AAISPDGSEIAFTY----KGDIYKVPSSGGKAIQLTT-HPAHDTQPVWSPDGNKIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGD--TGSKLY 419 F I +M G L S + P ++++ KDG + S++Y Sbjct: 84 REGGFDIHLMSSRGGAPTRLTTHSANEYPIVFRDNEHVLYTANIMADVKDGHFPSFSQVY 143 Query: 420 SIDLNGRNETLINT 433 +D G+ L ++ Sbjct: 144 EVDTEGKRPALFSS 157 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 31/218 (14%) Query: 219 FSPNQQKVAYA---TYDD-------EDILR-VYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 F P + K+ Y Y+D I R ++L D +R ++ NFR P +++ Sbjct: 165 FHPTENKILYHDKKGYEDPWRKHHQSSIARDIWLCDLNGERTYTKLTNFRGEDRNPTWTA 224 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G ++D + ++Y +L + ++LT+ + + + F D E Sbjct: 225 DGNSFFYLNEEDGSFNVYKRNLDGSDKKQLTHLKKHPVRFLTQSKAGVLCFVYDGE---- 280 Query: 328 LYVMQSNGSDQK-RIS-----QDKEASYF-------DPVWSPQGDLIAFTKFSGEKFAIG 374 +Y ++ QK RI Q+ +F + SP G IAF G+ F Sbjct: 281 IYTLREGAEPQKVRIEIITDQQESAVKHFNFRTGAKEMSVSPNGKEIAFI-IRGDIFVTS 339 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + + G+ ++ + ++SP GRSL+++ +++G Sbjct: 340 I--EYGTTRQITNTPEQERDVSFSPDGRSLLYAAERNG 375 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V +LT + +SPD ++I F S+REG +++M S G R++ Sbjct: 45 DIYKVPSSGGKAIQLTTHPAHDTQPVWSPDGNKIAFASNREGGFDIHLMSSRGGAPTRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSANEY 111 >gi|262197007|ref|YP_003268216.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262080354|gb|ACY16323.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1617 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E VVS + N+ V DG + D ++ FSP+ ++V A+ D +R++ Sbjct: 1410 ERVVSSALDNTARVWSADGGGEPLVFTEHDAWVWSASFSPDGERVVTASSDHS--VRIWN 1467 Query: 242 MD----TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 D TR+ + ++ FS +G R ++S KD+ + I+ +D Sbjct: 1468 ADGSGETRV------LSGHDEVVSWAEFSPDGDR-VVSASKDKTLRIWPLDGSEPPVVLT 1520 Query: 298 TNTLFINISASYSPDSSQIVFESD 321 + L++N +A +SPD ++V SD Sbjct: 1521 GHALWVN-TARFSPDGGRVVTASD 1543 >gi|258650574|ref|YP_003199730.1| WD40 domain-containing protein beta Propeller [Nakamurella multipartita DSM 44233] gi|258553799|gb|ACV76741.1| WD40 domain protein beta Propeller [Nakamurella multipartita DSM 44233] Length = 297 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 43/285 (15%) Query: 190 KNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLMDTRID 247 KN L V+D G + LT + P SP++ + YA D I LR+ D D Sbjct: 21 KNDLSVIDTTTGMVVGKLTDGSPGSQY-PTMSPDRSTIVYAQTSDHGIELRMMAADGSGD 79 Query: 248 RAPKRIGNFRSMILA-PRFSSNGKRAL----------ISVQKDEAMDIYSVDLQSNATER 296 R S++ A F N +R ++ ++ E D ++ + + T R Sbjct: 80 R---------SLLAADSEFCPNPQRPAWNPMDTSEIAVACRRGEDPDTLAL-ISVDGTLR 129 Query: 297 LT-NTLFINIS-ASYSPDSSQIVF---ESDREGKEQLYVMQSNGSDQKR--ISQDKEASY 349 T NT F + +YSPD + + ++ +Y NGS+ + S A+ Sbjct: 130 STINTGFPSFDDPTYSPDGKTLAYWASQTPGSTSGAIYTQPVNGSEAPKQITSPGARAND 189 Query: 350 FDPVWSPQGDLIAFTK----FSGEKFA-IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRS 403 DPVWS G I F + SG+ A I ++ DGS + + + P+ SP G Sbjct: 190 VDPVWSVDGKTIYFRRATEDASGQSSAQILRVQADGSGLTPITDGTAFDNDPSVSPDGTQ 249 Query: 404 LIFSRKKD---GDTGSKLYSIDLNGRN--ETLINTPAYASD-PQW 442 L F + G+ +++ I+++G + I P AS P+W Sbjct: 250 LAFFSNRTNAAGNNAGQIWVINVDGTGLRQIGIGKPGTASGPPEW 294 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 14/139 (10%) Query: 314 SQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +Q++ + + K L V+ + G +++ S + P SP I + + S Sbjct: 10 TQLIATRNEDDKNDLSVIDTTTGMVVGKLTDGSPGSQY-PTMSPDRSTIVYAQTSDHGIE 68 Query: 373 IGVMKKDGSQER-LLVEDS----NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +M DGS +R LL DS N Q P W+P S I + G+ L I ++G Sbjct: 69 LRMMAADGSGDRSLLAADSEFCPNPQRPAWNPMDTSEIAVACRRGEDPDTLALISVDGTL 128 Query: 428 ETLINT-------PAYASD 439 + INT P Y+ D Sbjct: 129 RSTINTGFPSFDDPTYSPD 147 >gi|256419972|ref|YP_003120625.1| peptidase S41 [Chitinophaga pinensis DSM 2588] gi|256034880|gb|ACU58424.1| peptidase S41 [Chitinophaga pinensis DSM 2588] Length = 1075 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 8/88 (9%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSR 408 PVWSP G IA+ +G ++A+ + + + ++ E S +P WSP + ++F+ Sbjct: 358 PVWSPDGKSIAYFSDAGGEYALHIRDQKAEKPAQIIPLGETSFFYSPLWSPDSKKILFAD 417 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAY 436 KK +LY +D + T I+ +Y Sbjct: 418 KK-----LRLYYVDTESKKVTQIDEDSY 440 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 32/67 (47%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DI++ D +R+T + + SPD I F + +G LYV+ NG +R Sbjct: 44 AGDIWTTDENGQHPQRITVNPDVELEPMLSPDGKWIAFSGNYDGNVDLYVVSVNGGIPRR 103 Query: 341 ISQDKEA 347 I+ +A Sbjct: 104 ITHHPDA 110 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSP 311 +G R++ L+P G RA + + D + +V + +T T ++ A +SP Sbjct: 311 VGALRNVNLSP----TGVRAAVEFRGD----VLTVPAEKGNIRNITATPGVHERAPVWSP 362 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFSGEK 370 D I + SD G+ L++ +I E S+F P+WSP I F+ +K Sbjct: 363 DGKSIAYFSDAGGEYALHIRDQKAEKPAQIIPLGETSFFYSPLWSPDSKKIL---FADKK 419 Query: 371 FAIGVMKKDGSQERLLVEDS-----NLQAPTWSPSGRSLIFSRK 409 + + + + + EDS + WSP R + ++++ Sbjct: 420 LRLYYVDTESKKVTQIDEDSYDRPDQTFSANWSPDSRWITYNKR 463 >gi|134299217|ref|YP_001112713.1| WD40 domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051917|gb|ABO49888.1| WD40 domain protein beta Propeller [Desulfotomaculum reducens MI-1] Length = 489 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 85/338 (25%), Positives = 144/338 (42%), Gaps = 61/338 (18%) Query: 101 QDWNSLGAQVLVTGRVIKEG---KDRLRVEFRLWDVKDRKQIIGKK-FFSSP--ASWRKI 154 ++W +Q+L R ++E RL+VE R + +K+I+ + +SP A+ RKI Sbjct: 24 EEWEDDISQLLTHMRQVREAVPVNRRLQVELRKKLLSRQKEIMNQNGIVTSPEEATKRKI 83 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY---LTPSRD 211 A T G + SR+ + + I SL + R AN +Y +T S Sbjct: 84 AQT-------------GLWQSRLAPFLGVLAAIFIVMSLTCLWRY-ANGQYHLEVTGSPQ 129 Query: 212 QIL--------FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA---PKRIGNFRSMI 260 +I +P SP+ K+ V L T + A P F+S Sbjct: 130 EITRFWTEDAPLQPAVSPDGTKILVVRGGS----LVLLSHTGVQLAYLEPPEGATFQS-- 183 Query: 261 LAPRFSSNGKRA--LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 P +S NG++ + S Q E + Q A + +T T N+ YS +++ Sbjct: 184 --PTWSPNGEQISFVFSQQGKEEIR------QLAAEKIITATKMSNV---YSQTTARGAE 232 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFS-GEKFAIGVM 376 + +E K+ L G K + ++ +F + V+SP G+ +A+ GE + V Sbjct: 233 KKGQEAKDSLQTFA--GKKLKAADLNHKSIHFSNLVYSPDGNRLAYVMGRIGEPTEVWVR 290 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 +G ++R+ +N APTWSP+G+ L+ R T Sbjct: 291 YSNGEEKRI----TNGDAPTWSPNGKYLVVQRPGKSKT 324 >gi|94970395|ref|YP_592443.1| WD-40-like beta propeller repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94552445|gb|ABF42369.1| WD40-like beta Propeller [Candidatus Koribacter versatilis Ellin345] Length = 496 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%) Query: 284 IYSVDLQSNATE-----RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 +Y +L +N TE RLT IN S+SPD IVF S+R+G +YV Sbjct: 197 VYLAELGNNNTELKAPQRLTLNAAINWFGSWSPDGKNIVFTSNRDGNYNIYVQGIQERSP 256 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKF 366 + ++ E PV SP G + + ++ Sbjct: 257 RALASGPEEQ-LSPVVSPDGKWVLYVQW 283 >gi|227539297|ref|ZP_03969346.1| tricorn family protease [Sphingobacterium spiritivorum ATCC 33300] gi|227240979|gb|EEI90994.1| tricorn family protease [Sphingobacterium spiritivorum ATCC 33300] Length = 1056 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 7/175 (4%) Query: 188 IIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 +IK+ LC + G+ + S+ P SP+ Q + ++ D D+ +V D + Sbjct: 1 MIKHFLCSLGISLGSLLTVHAQSQASFFSYPTLSPDGQTIVFSY--DGDLWKV-AADGGL 57 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R+ +APR S +GK S ++ MD+Y + L+ +LT + Sbjct: 58 ---ALRLTAMSGTEIAPRISPDGKWLAFSSNQNGNMDVYIMPLEGGDIRQLTYHDAGDEV 114 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S+S DS I F S R + Y + NG +R+ + + V +P G+L+ Sbjct: 115 DSWSWDSKSIYFTSSRYNRFSSYKVAVNGGTAERMFPHYFNTIHNVVETPSGELL 169 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P FS +G L + ++ DI +L++N+T LTNT ++ ++SPD I F S+ Sbjct: 441 SPSFSPDGNYILFTAYRNFEQDIMLHNLKTNSTVNLTNTGVSELTPTWSPDGKYIYFASN 500 Query: 322 R 322 R Sbjct: 501 R 501 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ + S D ++ V RLT I+ SPD + F S++ Sbjct: 31 PTLSPDGQTIVFSYDGD----LWKVAADGGLALRLTAMSGTEIAPRISPDGKWLAFSSNQ 86 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----KFSGEKFAIGVMK 377 G +Y+M G D ++++ D WS I FT +FS K A+ Sbjct: 87 NGNMDVYIMPLEGGDIRQLTYHDAGDEVDS-WSWDSKSIYFTSSRYNRFSSYKVAV---- 141 Query: 378 KDGSQERLLVEDSN-LQAPTWSPSGRSLI 405 G+ ER+ N + +PSG L Sbjct: 142 NGGTAERMFPHYFNTIHNVVETPSGELLF 170 >gi|326491569|dbj|BAJ94262.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 654 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%) Query: 308 SYSPDSSQIVFESDREGKEQLYVM-QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SP +VF S R G + LY++ + G + R D E P WSP G+LIAF+ Sbjct: 458 AVSPCGRWVVFRSGRSGHKNLYIVDAARGEETIRRVTDGEWIDTMPSWSPDGELIAFSSN 517 Query: 367 SGEK-----FAIGVMKKDGSQERLL----------VEDSNLQAPTWSPSGRSLIFSRKKD 411 E F+I +++ DG+ R + + + +SP G+ L+F+ Sbjct: 518 RHEPANAAVFSIYLVRPDGTGLRRVHVAGPAGSAEADKERINHVCFSPDGQWLLFTATLG 577 Query: 412 G 412 G Sbjct: 578 G 578 >gi|317476264|ref|ZP_07935514.1| prolyl oligopeptidase [Bacteroides eggerthii 1_2_48FAA] gi|316907538|gb|EFV29242.1| prolyl oligopeptidase [Bacteroides eggerthii 1_2_48FAA] Length = 697 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S + SPD QI + + + +L+VM ++GS+ ++I+ D P W G Sbjct: 48 SVAVSPDEKQIAYSVAYYSVPENKSNNELFVMNTDGSNNRQITCDNWQES-QPTWIKDGA 106 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 IAF I M DG+ + L + D +++ ++SP G+ L+F Sbjct: 107 KIAFLCNETGSSQIWEMNPDGTARKQLTQYDGDIEGFSFSPDGKKLLF 154 >gi|304383776|ref|ZP_07366235.1| tricorn family protease MdsD [Prevotella marshii DSM 16973] gi|304335300|gb|EFM01571.1| tricorn family protease MdsD [Prevotella marshii DSM 16973] Length = 1069 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ L++ SA SPD I F K ++ + + G + K+++ + + PVWSP Sbjct: 20 TSPLWLRFSA-ISPDGRTIAFSY----KGDIFTVPTQGGNAKQLTTNASYDAY-PVWSPD 73 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 G +AF I VM K+G + L DS + P Sbjct: 74 GQTLAFASAREGSLDIYVMSKEGGSPKRLTTDSGDEVP 111 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V Q ++LT + +SPD + F S REG +YVM G KR++ Sbjct: 44 DIFTVPTQGGNAKQLTTNASYDAYPVWSPDGQTLAFASAREGSLDIYVMSKEGGSPKRLT 103 Query: 343 QD 344 D Sbjct: 104 TD 105 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S NGK + D IY + T+++T+T + ++SPD + + ++R G Sbjct: 317 LSPNGKEIAFVLHGD----IYVTSIDYKTTKQITDTPEQERNVNFSPDGKSLTYAAERNG 372 Query: 325 KEQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAF 363 Q+YV + S +K + + + P +SP G IAF Sbjct: 373 LWQIYVARLKNSSEKAFAYASDIEEEQLVKSSKTSLLPKFSPDGKSIAF 421 >gi|116625893|ref|YP_828049.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229055|gb|ABJ87764.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 898 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 24/284 (8%) Query: 140 IGKKFFSSPASWRKIAHTISD-DIYQSI-----TGEKGDFNSRIL-FVSESVVS-GIIKN 191 +G F+ P R++ T S I + + G+ NS L FV V + G ++N Sbjct: 536 VGGVLFAVPFDPRRLEKTGSAVGIVEGVLRGNGVGQYAFSNSGTLAFVPGPVFTLGAVEN 595 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L ++DR G + L F PR S + +++ Y DD +++++ AP+ Sbjct: 596 VLALVDRRG-EVEPLKVVPAGFAF-PRASSDGKRIVY-QIDDGKEAGIWILELGGGTAPR 652 Query: 252 RI---GNFRSMILAPRFSSNGKRALISVQKDEAMDI---YSVDLQSNATERLT--NTLFI 303 R+ GN + P +SS+G++ ++ Q D D+ + S+A ERLT Sbjct: 653 RLTLPGNGGNRF--PIWSSDGQQ--VAFQSDREADLGIWWQRADGSSAAERLTKPGPGVT 708 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++ S+SPD F ++ +++ + V+SP G +A+ Sbjct: 709 HVPDSWSPDGQTFSFTEQKDKSAEIWTYSMRERKAAVFAAVPGGILGRSVFSPDGKWVAY 768 Query: 364 TKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + V + + D + P WSP G+ LI+ Sbjct: 769 QVDAQPNSRVYVRPFPPTATAYVAPADGDTHHPVWSPDGKELIY 812 Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 17/150 (11%) Query: 310 SPDSSQIVFESDREGKEQ-LYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S D +IV++ D +GKE +++++ G+ +R++ P+WS G +AF Sbjct: 622 SSDGKRIVYQID-DGKEAGIWILELGGGTAPRRLTLPGNGGNRFPIWSSDGQQVAFQSDR 680 Query: 368 GEKFAIGVMKKDGSQ--ERLLVEDSNL-QAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I + DGS ERL + P +WSP G++ F+ +K D +++++ + Sbjct: 681 EADLGIWWQRADGSSAAERLTKPGPGVTHVPDSWSPDGQTFSFTEQK--DKSAEIWTYSM 738 Query: 424 NGRNET--------LINTPAYASDPQWVGF 445 R ++ ++ D +WV + Sbjct: 739 RERKAAVFAAVPGGILGRSVFSPDGKWVAY 768 >gi|300774153|ref|ZP_07084021.1| Tricorn family protease [Sphingobacterium spiritivorum ATCC 33861] gi|300758964|gb|EFK55792.1| Tricorn family protease [Sphingobacterium spiritivorum ATCC 33861] Length = 1056 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 7/175 (4%) Query: 188 IIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 +IK+ LC + G+ + S+ P SP+ Q + ++ D D+ +V D + Sbjct: 1 MIKHFLCSLGISLGSLLTVHAQSQASFFSYPTLSPDGQTIVFSY--DGDLWKV-AADGGL 57 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R+ +APR S +GK S ++ MD+Y + L+ +LT + Sbjct: 58 ---ALRLTAMSGTEIAPRISPDGKWLAFSSNQNGNMDVYIMPLEGGDIRQLTYHDAGDEV 114 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S+S DS I F S R + Y + NG +R+ + + V +P G+L+ Sbjct: 115 DSWSWDSKSIYFTSSRYNRFSSYKVAVNGGTAERMFPHYFNTIHNVVETPSGELL 169 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P FS +G L + ++ DI +L++N+T LTNT ++ ++SPD I F S+ Sbjct: 441 SPSFSPDGNYILFTAYRNFEQDIMLHNLKTNSTINLTNTGVSELTPTWSPDGKYIYFASN 500 Query: 322 R 322 R Sbjct: 501 R 501 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ + S D ++ V RLT I+ SPD + F S++ Sbjct: 31 PTLSPDGQTIVFSYDGD----LWKVAADGGLALRLTAMSGTEIAPRISPDGKWLAFSSNQ 86 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----KFSGEKFAIGVMK 377 G +Y+M G D ++++ D WS I FT +FS K A+ Sbjct: 87 NGNMDVYIMPLEGGDIRQLTYHDAGDEVDS-WSWDSKSIYFTSSRYNRFSSYKVAV---- 141 Query: 378 KDGSQERLLVEDSN-LQAPTWSPSGRSLI 405 G+ ER+ N + +PSG L Sbjct: 142 NGGTAERMFPHYFNTIHNVVETPSGELLF 170 >gi|116626062|ref|YP_828218.1| WD-40 repeat-containing serine/threonin protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229224|gb|ABJ87933.1| serine/threonine protein kinase with WD40 repeats [Candidatus Solibacter usitatus Ellin6076] Length = 937 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 21/193 (10%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT------ERLTNTLFINISA 307 G F S+ ++ ++ G ALIS E ++IY+ + + RLT L + Sbjct: 631 GMFSSLTVS---NNGGTMALISA--SEFVNIYAAEFAAAPVPALSNVRRLTFGLTQDYPQ 685 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S++PDS I+FES+R G+ +L+ + + + + +E + P +P G I F + Sbjct: 686 SWTPDSKAILFESNRNGRFELFRYELSSGRETMFYRGREDA-VQPRVTPDGRWILFRQ-G 743 Query: 368 GEKFAIGVMK--KDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +FA +M+ DGS + V E Q +P+ R ++ S + D +L + Sbjct: 744 ASRFAAQLMRLPVDGSAQAAPVPMAGETGAEQGCGAAPASRCVVRSVEADQFVVRELDPV 803 Query: 422 DLNGRNETLINTP 434 G+ L TP Sbjct: 804 --QGKGRVLARTP 814 >gi|196230985|ref|ZP_03129845.1| peptidase S41 [Chthoniobacter flavus Ellin428] gi|196224815|gb|EDY19325.1| peptidase S41 [Chthoniobacter flavus Ellin428] Length = 1140 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 22/166 (13%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RL+ + +SPD +++ F + +G +YVM G + +RI+ + W Sbjct: 63 RLSTPRGVQQFPRFSPDGAKLAFTGNYDGNVDIYVMPVGGGEPQRITHHGGSERLL-GWY 121 Query: 356 PQG-------DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS- 407 P G ++AFT G+ F V + G E+L V A SP G +L F+ Sbjct: 122 PDGQSLLYESHMMAFTDRVGQLFK--VPAQGGLPEKLPVAYGEFGAI--SPDGHTLAFTP 177 Query: 408 --------RKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 ++ G ++ DL + E + + A S P W G Sbjct: 178 ISTDFATWKRYRGGMAPDIWLFDLEKKTAENVTHNEANDSQPMWHG 223 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 6/114 (5%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYS 310 R+ N + S GKRAL + D I+SV + +T+T + + ++S Sbjct: 306 RVQNVAGYVRNAAISPTGKRALFEARGD----IFSVPAEHGIVRDITSTSGVAERNPAWS 361 Query: 311 PDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAF 363 PD I + SD+ G+ +L + S+ ++ ++ + P WSP I F Sbjct: 362 PDGRWIAYFSDKTGEYELTIRPSDKAGGEETLTHLGRGFRYQPQWSPDAKKIVF 415 >gi|162452828|ref|YP_001615195.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161163410|emb|CAN94715.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1532 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 110/239 (46%), Gaps = 19/239 (7%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V + DG+ + + +++ FSP+ +++ A++D RV+ D + P+ + Sbjct: 1080 VWNADGSGEPRILRGHEDVVYSAAFSPDGERIVTASWD--KTARVWNADGSGE--PRILR 1135 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + + + FS++G+R +++ D+ +++ + + ++ SA++SPD Sbjct: 1136 GHQDRVYSAVFSADGRR-IVTASYDKTARVWNAESTGEPLSLRGHDDSVS-SAAFSPDGK 1193 Query: 315 QIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +IV S DR + V + + I + E F +SP G I S +K A Sbjct: 1194 RIVTASWDRTAR----VWNAEVAGAPVILRGHEGEVFSAAFSPDGKRIVTA--SDDKTA- 1246 Query: 374 GVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 V DG+ E L++ +++ +SP G ++ + D +++++ D +G TL Sbjct: 1247 RVWNADGTGEPLVIRGHADRVRSAAFSPDGERIVTA---SFDKTARVWNADGSGEPVTL 1302 Score = 37.0 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E +V+ N+ V + DG + D+ + FSP+ ++V A++D +RV+ Sbjct: 1319 ERIVTASYDNTARVWNADGTGEPVVLRGHDRWVVSAAFSPDGKRVVTASWD--KTVRVWN 1376 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D P + ++ A FS +GK +++ D+ I++ D + Sbjct: 1377 ADG--TGKPVVLRGHEHLVNAAVFSPDGKY-VVTASDDKTTRIWNADGTGEPLVLRGSDA 1433 Query: 302 FINISASYSPDSSQIVFESD 321 +N + +YSPD +IV SD Sbjct: 1434 SVN-AVAYSPDGKRIVTGSD 1452 >gi|328913235|gb|AEB64831.1| hypothetical protein LL3_03301 [Bacillus amyloliquefaciens LL3] Length = 694 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 15/152 (9%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFI-----NISASYSPDSSQI 316 P+++ +G+RA + + ++ D YS + TE T+ + N S +SPD ++ Sbjct: 53 PQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPDGRRL 112 Query: 317 VFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSGEKFAI 373 F SDRE G QLY++ + + + D DP+W+P G L++ + S E+ Sbjct: 113 AFVSDREDGVPQLYIIDAA-GGEAERAADIPWGVADPIWAPDGRSVLVSVSLTSAERADE 171 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 KK E + N+Q+ T+ G+ L+ Sbjct: 172 KEKKKQDEYEPV-----NIQSLTYKRDGKGLL 198 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 65/269 (24%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PR+SP+ +++A+ + ++ + ++Y++D A +R + + P ++ +G+ L+SV Sbjct: 103 PRWSPDGRRLAFVSDREDGVPQLYIIDAAGGEA-ERAADIPWGVADPIWAPDGRSVLVSV 161 Query: 277 Q----------------KDEAMDIYS--------------------VDLQSNATERLTNT 300 + E ++I S + L++ ++LT+ Sbjct: 162 SLTSAERADEKEKKKQDEYEPVNIQSLTYKRDGKGLLNGSWTQLVLIHLETGEIQQLTDH 221 Query: 301 LFINISASYSPDSSQIVF-----ESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVW 354 + A++SPD Q+ F E GK + +Y+M D K+I+ S+ V+ Sbjct: 222 EADHFDAAFSPDGKQLAFTANLCEPGDAGKPRDVYLMNLADGDLKQITP-HSGSFGSCVF 280 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKK---DGSQERL--------------LVEDSNLQA--- 394 SP G IA E ++K D ERL L+ DS + Sbjct: 281 SPDGSYIALLGHENEFRNATLVKAWLYDVKNERLSCLTDMLDVHLSDALIADSLIGGVTP 340 Query: 395 -PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 P W+ G+ + G TG SID Sbjct: 341 RPVWTNDGQGFYVLGSEQGSTGIYYISID 369 >gi|270160220|ref|ZP_06188876.1| TolB-like protein [Legionella longbeachae D-4968] gi|269988559|gb|EEZ94814.1| TolB-like protein [Legionella longbeachae D-4968] Length = 286 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 284 IYSVDLQSNATERLTNTLFI-----------NISASY----SPDSSQIVFES--DREGKE 326 IY V +Q+N + FI I+A Y SPD I + + + Sbjct: 11 IYCVFVQANPVIAFERSGFIWTSNLDGSKARKITAGYVPEISPDGKYIAYNTADHQSTNR 70 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 L +++ ++ + F+PVWSP + F F + + ++ KD S LL Sbjct: 71 YLAIVELKSGKVAQLQHIPSKNNFNPVWSPDSKKLIFNTFINNNWYLALINKDSSGYLLL 130 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 N P W+ G S D +T +Y ++L G+ Sbjct: 131 NNTQNKYTPVWAQDGNSFF---THDLET---IYWMNLEGK 164 >gi|311745279|ref|ZP_07719064.1| peptidase, S9A/B/C family [Algoriphagus sp. PR1] gi|126577811|gb|EAZ82031.1| peptidase, S9A/B/C family [Algoriphagus sp. PR1] Length = 676 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 40/241 (16%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYA-----TYDDEDILRVYL--MDTRIDRAPKRIG 254 N+ Y+T P SP+ KV Y D D +++ +D +R P G Sbjct: 33 NLEYVT--------NPSISPDGSKVVYVRNFKDIMTDRDYSNLWISNIDGTQNR-PLTQG 83 Query: 255 NFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 N ++P +S +G + A S Q+DE M ++ + L + + LTN+ S S+S D Sbjct: 84 NHND--VSPVWSHDGTKIAYRSNQQDEKMKLFVLYLDTKESVALTNSANPPGSVSWSFDD 141 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVW----SPQGDLIAFTKFSG 368 ++ F +V + S ++ + A++ D P++ + +GD + K Sbjct: 142 QELAFTQ--------FVPKQKKSLLNIPAKPEGATWNDAPIYIDEMNYRGDGAGYYKSGN 193 Query: 369 EK-FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTG-SKLYSID 422 ++ F IG+ G+ + +D++ P W+ G+SLIFS D + G S +Y +D Sbjct: 194 QQIFTIGLAG--GTARQWTFDDNDYGIPIWTKDGKSLIFSANLHENHDLEPGNSDIYQLD 251 Query: 423 L 423 L Sbjct: 252 L 252 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 263 PRFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P ++ +GK + S E D IY +DL S + + LT+ + SPD +Q Sbjct: 219 PIWTKDGKSLIFSANLHENHDLEPGNSDIYQLDLASGSIKALTSRFGPDGGPVLSPDGTQ 278 Query: 316 IV---FESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 I F+ +G + LYVM +GS K ++ D + +P W G I F Sbjct: 279 IAYTGFDDSYQGYQVTNLYVMNLDGSGIKNLTADLDRDAANPQWESNGKGIYF 331 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%) Query: 352 PVWSPQGDLIAFTKF--SGEKFAIG---VMKKDGSQERLLVEDSNLQA--PTWSPSGRSL 404 PV SP G IA+T F S + + + VM DGS + L D + A P W +G+ + Sbjct: 270 PVLSPDGTQIAYTGFDDSYQGYQVTNLYVMNLDGSGIKNLTADLDRDAANPQWESNGKGI 329 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLI 431 F + GDT K+ + L G+ T++ Sbjct: 330 YFQYDEFGDT--KIGHVALTGKIRTVV 354 >gi|167762900|ref|ZP_02435027.1| hypothetical protein BACSTE_01264 [Bacteroides stercoris ATCC 43183] gi|167699240|gb|EDS15819.1| hypothetical protein BACSTE_01264 [Bacteroides stercoris ATCC 43183] Length = 705 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 8/108 (7%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S + SPD QI + + + +L+VM ++GS ++I++D PVW G Sbjct: 56 SVAVSPDEKQIAYSVAYYSVPENKSNNELFVMNADGSSNRQITRDSWQES-QPVWIKDGK 114 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 IAF + M DG++ + L + +++ +SP G+ L+F Sbjct: 115 KIAFLCNESGSSQVWEMNPDGTERKQLTRYEGDIEGFAFSPDGKKLLF 162 >gi|328554924|gb|AEB25416.1| YuxL [Bacillus amyloliquefaciens TA208] Length = 694 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 15/152 (9%) Query: 263 PRFSSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFI-----NISASYSPDSSQI 316 P+++ +G+RA + + ++ D YS + TE T+ + N S +SPD ++ Sbjct: 53 PQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPDGRRL 112 Query: 317 VFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSGEKFAI 373 F SDRE G QLY++ + + + D DP+W+P G L++ + S E+ Sbjct: 113 AFVSDREDGVPQLYIIDAA-GGEAERAADIPWGVADPIWAPDGRSVLVSVSLTSAERADE 171 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 KK E + N+Q+ T+ G+ L+ Sbjct: 172 KEKKKQDEYEPV-----NIQSLTYKRDGKGLL 198 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 65/269 (24%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PR+SP+ +++A+ + ++ + ++Y++D A +R + + P ++ +G+ L+SV Sbjct: 103 PRWSPDGRRLAFVSDREDGVPQLYIIDAAGGEA-ERAADIPWGVADPIWAPDGRSVLVSV 161 Query: 277 Q----------------KDEAMDIYS--------------------VDLQSNATERLTNT 300 + E ++I S + L++ ++LT+ Sbjct: 162 SLTSAERADEKEKKKQDEYEPVNIQSLTYKRDGKGLLNGSWTQLVLIHLETGEIQQLTDH 221 Query: 301 LFINISASYSPDSSQIVF-----ESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVW 354 + A++SPD Q+ F E GK + +Y+M D K+I+ S+ V+ Sbjct: 222 EADHFDAAFSPDGKQLAFTANLCEPGDAGKPRDVYLMNLADGDLKQITP-HSGSFGSCVF 280 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKK---DGSQERL--------------LVEDSNLQA--- 394 SP G IA E ++K D ERL L+ DS + Sbjct: 281 SPDGSYIALLGHENEFRNATLVKAWLYDVKNERLSCLTDMLDVHLSDALIADSLIGGVTP 340 Query: 395 -PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 P W+ G+ + G TG SID Sbjct: 341 RPVWTNDGQGFYVLGSEQGSTGIYYISID 369 >gi|148977418|ref|ZP_01814018.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] gi|145963370|gb|EDK28635.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] Length = 161 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y++DL + ++T N + PD ++F SDR GK Q+Y + + + RI+ Sbjct: 1 MYTLDLATRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITW 60 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + +P G + S F + + ++L + ++P+ +P+G Sbjct: 61 QGSQNLGGQI-TPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGM 119 Query: 404 LIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 +I+S + + SID GR L T P W F+ Sbjct: 120 VIYSSIYNKTNVLSMVSID--GRFKARLPATNGRVRAPAWSPFL 161 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 24/172 (13%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y +D R +I RS P + +GK + + + IY+V+L +N+T R+T Sbjct: 1 MYTLDL-ATRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRIT 59 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-------- 350 N+ +PD G+ + V +SN S QD E Sbjct: 60 WQGSQNLGGQITPD-----------GRFLIMVNRSN-SGFNLAKQDLETGAVQVLTKTLL 107 Query: 351 --DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 P +P G ++ ++ + + ++ DG + RL + ++AP WSP Sbjct: 108 DESPSIAPNGGMVIYSSIYNKTNVLSMVSIDGRFKARLPATNGRVRAPAWSP 159 >gi|315637614|ref|ZP_07892820.1| translocation protein TolB [Arcobacter butzleri JV22] gi|315478068|gb|EFU68795.1| translocation protein TolB [Arcobacter butzleri JV22] Length = 439 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 18/200 (9%) Query: 217 PRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P+++ +QK Y T YD ++++ + + R+ + I + M+ S +G + L Sbjct: 213 PKWADKEQKTIYYTSYNYDKPTLVKLNIYN----RSKEVIMDSDGMLACSDVSKDGSKLL 268 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQ 332 I+ DI+ D+ + +++ +I++ + D +IVF SDR G ++ + Sbjct: 269 ITASPTGQPDIFLYDVNTRTKKQVAGGPGWIDVGGQFVEDDKEIVFVSDRLGNPNIFKQR 328 Query: 333 SNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMK-KDGSQERLL 386 S +R + K S V S ++I +K S G+ F + ++ + + +RL Sbjct: 329 IGSSSVERMVFHSKNNS---SVTSNGNNIIFSSKDSDNEMGKSFNLYLISTRTDNLQRLT 385 Query: 387 VEDSNLQAPTWSPSGRSLIF 406 + N Q P +SP G+S++F Sbjct: 386 TQGVN-QFPKFSPDGQSVLF 404 >gi|149277359|ref|ZP_01883501.1| peptidase S41 [Pedobacter sp. BAL39] gi|149232236|gb|EDM37613.1| peptidase S41 [Pedobacter sp. BAL39] Length = 1099 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 19/179 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ + RLT + + +SPD +QI F + +G +YV+ +G KRI+ Sbjct: 52 DIWIAGRDGSNPRRLTVNPAVEQNPIFSPDGTQIAFTGNYDGNTDIYVIPVSGGSPKRIT 111 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV----MKKDGS-QERLLVEDSNLQAPT- 396 A W D + FT FA+ +K DG+ +E L + ++ +P+ Sbjct: 112 YHPSADVLR-GWI-GNDQLYFTSVRDYNFALSPRMHRIKLDGTAEEALPMPEAAQGSPSA 169 Query: 397 ----WS------PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWVG 444 W+ PS R+ + ++ G +++ D +N +I P + PQW+G Sbjct: 170 DGRYWAYIKNGDPSERANVAFKRYRGGGMPQIWIFDTQTKNIEIIPGPGSNNVKPQWLG 228 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 57/216 (26%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-----SYSPDSSQIVFE 319 F G+ L+ + D+ S+ +Q++ + + ++++SA SP + +FE Sbjct: 276 FEQAGRIHLMDATSHQVKDL-SISIQADVPYKRPH--YVDMSADIRNSEISPKGVRALFE 332 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S + +++ + D + IS + P WSP G I++ + K+ Sbjct: 333 S----RGEIFSVPKEKGDARNISNSPGSYEKFPAWSPDGKYISY-----------LSDKN 377 Query: 380 GSQERLLVEDSNLQA--------------PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 GS + +L + A P WSP + L ++ D L+ ID+N Sbjct: 378 GSYQLVLANQATKAAPEYISLGSTPFYFQPVWSPDSKKLFYA-----DAHLNLFYIDINA 432 Query: 426 RNETLINT---------------PAYASDPQWVGFM 446 R L+ P+++ D +W+ ++ Sbjct: 433 RKPVLVKADTESPNPGRTYNPFNPSWSPDSKWISYV 468 >gi|209523154|ref|ZP_03271710.1| WD-40 repeat protein [Arthrospira maxima CS-328] gi|209496305|gb|EDZ96604.1| WD-40 repeat protein [Arthrospira maxima CS-328] Length = 829 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 182 ESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +++ SG N++ + D G +R LT D +L RFSP+ Q +A +YD+ V Sbjct: 559 QTLASGSHDNTVRLWDVATGRELRQLTGHTDWVL-SVRFSPDGQTLASGSYDNT----VR 613 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L D R +++ +L+ RFS +G+ L S D + ++ V + +T Sbjct: 614 LWDVATGRPLRQLTGHTDWVLSVRFSPDGQ-TLASGSDDNTVRLWDVPTGRELRQLTGHT 672 Query: 301 LFINISASYSPDSSQIVFES 320 +N S +SPD + S Sbjct: 673 NSVN-SVRFSPDGQTLASGS 691 >gi|58580571|ref|YP_199587.1| hypothetical protein XOO0948 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425165|gb|AAW74202.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 800 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 11/218 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + P +S +G+ Sbjct: 250 LTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREI 309 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + A E + +S S+SPD+ ++F S G + Sbjct: 310 AFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYGAAR 369 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + ++ +A FD P +SP G I F + + + G+ ERL Sbjct: 370 IRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFLRNPQLGDLWRIPAEGGAAERL 429 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + +++ +W P G +IF R+ D + ++LY +DL Sbjct: 430 THDTADIWGWSWLPDGSGVIFGRRVDIE--ARLYRLDL 465 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQG 358 +++ S SPD + + + S DR G L N R+ + D P WSP G Sbjct: 249 DLTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNA--YPRVLETPAPGVSDRLPAWSPDG 306 Query: 359 DLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 IAF++ S ++E + + +++ + +WSP R+L+F Sbjct: 307 REIAFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYG 366 Query: 415 GSKLYSIDLNGRNETLINTPA----------YASDPQWVGFM 446 +++ ++L +N PA Y+ D W+ F+ Sbjct: 367 AARIRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFL 408 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 19/173 (10%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 P + G+F APR+S +G ++ ++ + D++ + + A ERLT+ S+ Sbjct: 386 PAQAGDFD---YAPRYSPDGHW-IVFLRNPQLGDLWRIPAEGGAAERLTHDTADIWGWSW 441 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD S ++F + + +LY + S + D +A D G L+ F+ Sbjct: 442 LPDGSGVIFGRRVDIEARLYRLDLLDSSLHDLGVD-DAQAPDVA---HGHLV----FAQR 493 Query: 370 KFAIGV-------MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 K GV M + RL P +P GR L+F+ + G G Sbjct: 494 KPQFGVYQVIRDTMNGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYG 546 >gi|315453875|ref|YP_004074145.1| putative protein tolB [Helicobacter felis ATCC 49179] gi|315132927|emb|CBY83555.1| putative protein tolB precursor [Helicobacter felis ATCC 49179] Length = 414 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 22/229 (9%) Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSI 166 A +LV+ RV K G+ V R +DV + + K + F+ + IAH ++ DI ++ Sbjct: 85 ASLLVSLRVDKLGQ----VNVRFYDVAHQSVLGIKDYTFNQKPLYPFIAHRVAIDINDAL 140 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI------LFEPRFS 220 + +R + ++ + G+ K S+ LT +D I +F + Sbjct: 141 KAPPIAWMARFVIFAKYIKPGVTKISIADYT--------LTYKQDIIDNGMLNVFPKWAN 192 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 Q Y Y + Y + D + I M S NG++ L+++ + Sbjct: 193 AEQSAFYYTQYLHHPTIIKYNLR---DGTSEVITQSEGMATVSSVSRNGRKLLLTLAPNG 249 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 DIY D + RLT I++ ++ + +VF SDR G +Y Sbjct: 250 QSDIYLYDTAKKNSIRLTKYQGIDVLGNFVGNEKGMVFVSDRAGYPNVY 298 >gi|52081717|ref|YP_080508.1| putative acylaminoacyl-peptidase YuxL [Bacillus licheniformis ATCC 14580] gi|52787103|ref|YP_092932.1| YuxL [Bacillus licheniformis ATCC 14580] gi|52004928|gb|AAU24870.1| putative acylaminoacyl-peptidase YuxL [Bacillus licheniformis ATCC 14580] gi|52349605|gb|AAU42239.1| YuxL [Bacillus licheniformis ATCC 14580] Length = 653 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 309 YSPDSSQIVFESDREGKEQ--------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 YSPD ++I + + ++Q +Y + S Q + + P WSP G Sbjct: 21 YSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQH---PRWSPDGKY 77 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK 409 +AFT E I V+ G + R + + ++ P WSP G+SL+ S K Sbjct: 78 LAFTSNREETAQIYVISAAGGEARKVTDIPYDVSQPEWSPDGKSLLCSVK 127 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYS-----VDLQSNATERLTNTLFINISASYSPDS 313 I P++S +G + A + + +E D Y D + A+ + T N +SPD Sbjct: 16 ITDPQYSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQHPRWSPDG 75 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG-DLIAFTKFSGEK 370 + F S+RE Q+YV+ + G + ++++ D P WSP G L+ K + E+ Sbjct: 76 KYLAFTSNREETAQIYVISAAGGEARKVT-DIPYDVSQPEWSPDGKSLLCSVKLTKEE 132 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 20/197 (10%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PR+SP+ + +A+ T + E+ ++Y++ A +++ + + P +S +GK L S Sbjct: 68 HPRWSPDGKYLAF-TSNREETAQIYVISAAGGEA-RKVTDIPYDVSQPEWSPDGKSLLCS 125 Query: 276 VQ--KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQ 332 V+ K+E++D TE + S SY D + GK QL ++Q Sbjct: 126 VKLTKEESVD------DEKKTEIEDHEPLEVDSLSYKADGQGF-----KRGKYTQLVLVQ 174 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD---GSQERLLVED 389 + K+++ D E +F +SP GD IAF + V + G +RL ++ Sbjct: 175 VETGEMKQLT-DLERDHFSHAFSPCGDQIAFCANQTDMRVNDVYLMNLSTGDLKRLTGQN 233 Query: 390 SNLQAPTWSPSGRSLIF 406 + ++SP G+ L F Sbjct: 234 GIFSSLSFSPDGKHLAF 250 >gi|94971144|ref|YP_593192.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] gi|94553194|gb|ABF43118.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] Length = 888 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQA-PTWSPSGRSLIFSRK 409 PVWSP G IAFT G AI ++ +L V D +L TWSP GR L++ + Sbjct: 672 PVWSPDGSRIAFTMNQGASMAIKPSAGGAPEQTILTVPDHSLSGVTTWSPDGRHLMYQQG 731 Query: 410 KDGDTGSKLYSIDLNGR--------NETLINTPAYASDPQWVGFM 446 + +L +D +G+ N+ + ++ D +WV +M Sbjct: 732 YGLEL--QLSLLDPSGQGKPQAFAGNDMRTMSGQFSPDGRWVAYM 774 >gi|262173178|ref|ZP_06040855.1| protease-related protein [Vibrio mimicus MB-451] gi|261890536|gb|EEY36523.1| protease-related protein [Vibrio mimicus MB-451] Length = 1085 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PRF+ + L + + +VD QS T +I+ SPD QI F Sbjct: 4 PRFTLSSALVLTFFSTAPILSLANVDTQSEVA-HAAPTWLRDIA--LSPDGKQIAFTY-- 58 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---VMKKD 379 Q++++ + G + +++ S PVWSP +AFT ++ +G ++ Sbjct: 59 --AGQIWLVPAQGGEAIALTESGVYSE-APVWSPDSQSLAFT---ANRYGMGDVFILAVQ 112 Query: 380 GSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDT-----------GSKLYSIDLNGRN 427 G + R L P +S G+ L FS ++ GD ++LYS+ + G Sbjct: 113 GGESRRLTYHGAKDTPYAFSADGKQLYFSSRRLGDEKANANVKQGGFTAQLYSVPVTGGR 172 Query: 428 ETLI 431 E L+ Sbjct: 173 EQLV 176 >gi|83859080|ref|ZP_00952601.1| putative enzyme [Oceanicaulis alexandrii HTCC2633] gi|83852527|gb|EAP90380.1| putative enzyme [Oceanicaulis alexandrii HTCC2633] Length = 682 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 15/84 (17%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGS------------QERLLVED-SNLQAPTWSPSG 401 SP G+ +AFT G ++DG+ RL V D S + WSP G Sbjct: 45 SPDGEQVAFTLSVPRNVVAG--EEDGAPRAELYVASGPDAARLYVSDESYISGAHWSPQG 102 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNG 425 L + ++DGDTGS LY I ++G Sbjct: 103 DGLTYLTRRDGDTGSALYEIPVDG 126 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 16/118 (13%) Query: 310 SPDSSQIVF-----------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD Q+ F E D + +LYV ++G D R+ E+ WSPQG Sbjct: 45 SPDGEQVAFTLSVPRNVVAGEEDGAPRAELYV--ASGPDAARLYVSDESYISGAHWSPQG 102 Query: 359 D-LIAFTKFSGEKF-AIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 D L T+ G+ A+ + DG Q R+ D+++Q+ +P G +L F + D Sbjct: 103 DGLTYLTRRDGDTGSALYEIPVDGGQARRIFAHDASIQSYVIAPDGETLFFIARDKAD 160 >gi|258624228|ref|ZP_05719177.1| Periplasmic protease [Vibrio mimicus VM603] gi|258583379|gb|EEW08179.1| Periplasmic protease [Vibrio mimicus VM603] Length = 1085 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 26/184 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PRF+ + L + + +VD QS L + SPD QI F Sbjct: 4 PRFTLSSALVLTFFSTAPILSLANVDTQSEVAHAAPTWLR---DIALSPDGKQIAFTY-- 58 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---VMKKD 379 Q++++ + G + +++ S PVWSP +AFT ++ +G ++ Sbjct: 59 --AGQIWLVPAQGGEAIALTESGVYSE-APVWSPDSQSLAFT---ANRYGMGDVFILAVQ 112 Query: 380 GSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDT-----------GSKLYSIDLNGRN 427 G + R L P +S G+ L FS ++ GD ++LYS+ + G Sbjct: 113 GGESRRLTYHGAKDTPYAFSADGKQLYFSSRRLGDEKANANVKQGGFTAQLYSVPVTGGR 172 Query: 428 ETLI 431 E L+ Sbjct: 173 EQLV 176 >gi|157737824|ref|YP_001490508.1| translocation protein TolB [Arcobacter butzleri RM4018] gi|157699678|gb|ABV67838.1| colicin tolerance-like protein (tolB) [Arcobacter butzleri RM4018] Length = 430 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 18/200 (9%) Query: 217 PRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P+++ +QK Y T YD ++++ + + R+ + I + M+ S +G + L Sbjct: 204 PKWADKEQKTIYYTSYNYDKPTLVKLNIYN----RSKEVIMDSDGMLACSDVSKDGSKLL 259 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQ 332 I+ DI+ D+ + +++ +I++ + D +IVF SDR G ++ + Sbjct: 260 ITASPTGQPDIFLYDVNTRTKKQVAGGPGWIDVGGQFVEDDKEIVFVSDRLGNPNIFKQR 319 Query: 333 SNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMK-KDGSQERLL 386 S +R + K S V S ++I +K S G+ F + ++ + + +RL Sbjct: 320 IGSSSVERMVFHSKNNS---SVTSNGNNIIFSSKDSDNEMGKSFNLYLISTRTDNLQRLT 376 Query: 387 VEDSNLQAPTWSPSGRSLIF 406 + N Q P +SP G+S++F Sbjct: 377 TQGVN-QFPKFSPDGQSVLF 395 >gi|305665561|ref|YP_003861848.1| acylaminoacyl-peptidase [Maribacter sp. HTCC2170] gi|88710317|gb|EAR02549.1| acylaminoacyl-peptidase [Maribacter sp. HTCC2170] Length = 681 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 13/111 (11%) Query: 263 PRFSSNG-----KRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S NG +R + V KD A+ +++ + + ++LT+ S +SP ++ Sbjct: 41 PQISPNGDWIVYRRMRMDVMKDRAVGNLWMLKGDGSQHQKLTSRESGESSPKWSPSGDRL 100 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP---VWSPQGDLIAFT 364 F SD + + ++Y+ N +ISQ F P VWSP+G+ +AFT Sbjct: 101 AFVSDTDEESEIYIYWVNSGKIAKISQLP----FSPSSLVWSPKGNQLAFT 147 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%) Query: 351 DPVWSPQGDLIAFTKFSGEKF---AIG---VMKKDGSQ-ERLLVEDSNLQAPTWSPSGRS 403 DP SP GD I + + + A+G ++K DGSQ ++L +S +P WSPSG Sbjct: 40 DPQISPNGDWIVYRRMRMDVMKDRAVGNLWMLKGDGSQHQKLTSRESGESSPKWSPSGDR 99 Query: 404 LIFSRKKDGDTGSKLYSID 422 L F D ++ +Y ++ Sbjct: 100 LAFVSDTDEESEIYIYWVN 118 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 14/112 (12%) Query: 310 SPDSSQIVFESDR------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SP+ IV+ R L++++ +GS ++++ +E+ P WSP GD +AF Sbjct: 44 SPNGDWIVYRRMRMDVMKDRAVGNLWMLKGDGSQHQKLTS-RESGESSPKWSPSGDRLAF 102 Query: 364 TKFSGEKFAIGVMKKDGSQ----ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + E+ I + + + +L S+L WSP G L F+ K+ Sbjct: 103 VSDTDEESEIYIYWVNSGKIAKISQLPFSPSSL---VWSPKGNQLAFTMNKE 151 >gi|159898085|ref|YP_001544332.1| WD40 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891124|gb|ABX04204.1| WD40 domain protein beta propeller [Herpetosiphon aurantiacus ATCC 23779] Length = 375 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 40/177 (22%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK + V+ DI+ + R T S+SPD S+I + E + Sbjct: 57 GKLLFVRVENGSG-DIW---VHEGTEARRITTSHKKYQPSWSPDGSKIAYIQREESFADI 112 Query: 329 YVMQSNGSDQKRISQDKEAS--------------YFDPVWSPQGDLIAFTK--------- 365 +VM +NGS++++++ ++ + F P WSP G +++ Sbjct: 113 WVMNANGSNKQQVTNNEPTNIAARSEDHIQTLRWAFYPRWSPDGQFLSYVSQAQTPRDVG 172 Query: 366 ------------FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + + G + S +R + D++L PTWS G +++S+ + Sbjct: 173 GGYQEYPLSLYIYGTRRIGTGQF-PEASFQRFVQADTDLSHPTWSDDGTMIVYSQAE 228 >gi|299146378|ref|ZP_07039446.1| protein TolB [Bacteroides sp. 3_1_23] gi|298516869|gb|EFI40750.1| protein TolB [Bacteroides sp. 3_1_23] Length = 327 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 18/167 (10%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P +SS+ K + Q+ + + I+S ++Q+N +N + + P + + F Sbjct: 157 SPIYSSDMKLIFFARQEMKGISIWSYNIQNNFLSNYSNGM------NPCPINKESAFLCT 210 Query: 322 R---EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--------KFSGEK 370 R GK +++ + ++ I D + S+ P SP G I F FS Sbjct: 211 RISGTGKSEIWKINYKTGVEECIVSDPQHSFTTPTLSPDGQWILFVGDSKIDDNNFSYLN 270 Query: 371 FAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 I V K DG++ ++ ++ +P WS G+ + F ++ TG+ Sbjct: 271 TDIFVCKVDGTRLSQITYHAADDLSPVWSKDGKYIYFISQRGDPTGT 317 >gi|299138847|ref|ZP_07032024.1| peptidase S9 prolyl oligopeptidase active site domain protein [Acidobacterium sp. MP5ACTX8] gi|298599001|gb|EFI55162.1| peptidase S9 prolyl oligopeptidase active site domain protein [Acidobacterium sp. MP5ACTX8] Length = 689 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 57/288 (19%), Positives = 118/288 (40%), Gaps = 69/288 (23%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT------RIDRAPKRIGNFR 257 R PS + + P +SP+ + +A+ + + + +++++ ++ ++ +G F Sbjct: 79 RAPVPSLEGVPGSPEWSPDGRWLAFVEHPKQGVGQIWIVPAEGSVAWQVSKSATDVGLFH 138 Query: 258 SMILAPRFSSNGKR-ALISVQKDEAMD--------------------IYSVDLQSNATER 296 +S++ K A ++ Q+D A++ ++SVDL++ + Sbjct: 139 -------WSADSKHIAFLTTQRDHAVNGRAERFGSFEVVGKDYQQTQLWSVDLEAASGHI 191 Query: 297 LTNTLFINISA--------SYSPDSSQIVFES------DREGKEQLYVMQSNGSDQKRIS 342 + +S+ S+SPDS+ I F + + +Y++ ++ R Sbjct: 192 AAQVPRVLVSSPAFSIADFSWSPDSTMIAFTAAGTPLLTAYSSQDIYLLDRTKGNEVRKI 251 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEK-------FAIGVMKKDGSQERLLVE------- 388 + F P++SP G IAF + G++ + V +D Q + Sbjct: 252 VGLPSPDFSPIFSPDGKKIAFLTWLGQRDFFYSNVHIVTVDVEDAWQRPVTAAAAVRDVT 311 Query: 389 ---DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 D N W SG SL FS ++ T + L+ ID +G + T I + Sbjct: 312 ARFDENPSLLGW--SGNSLYFSAEQ--KTSTHLFRIDSDGNHLTRITS 355 >gi|84622525|ref|YP_449897.1| hypothetical protein XOO_0868 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366465|dbj|BAE67623.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 783 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 11/218 (5%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRA 272 P SP+ VAYA+ + L+ T + P+ + + P +S +G+ Sbjct: 233 LTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREI 292 Query: 273 LISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ 327 S Q + + I + + A E + +S S+SPD+ ++F S G + Sbjct: 293 AFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYGAAR 352 Query: 328 LYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + ++ +A FD P +SP G I F + + + G+ ERL Sbjct: 353 IRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFLRNPQLGDLWRIPAEGGAAERL 412 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + +++ +W P G +IF R+ D + ++LY +DL Sbjct: 413 THDTADIWGWSWLPDGSGVIFGRRVDIE--ARLYRLDL 448 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQG 358 +++ S SPD + + + S DR G L N R+ + D P WSP G Sbjct: 232 DLTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNA--YPRVLETPAPGVSDRLPAWSPDG 289 Query: 359 DLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 IAF++ S ++E + + +++ + +WSP R+L+F Sbjct: 290 REIAFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYG 349 Query: 415 GSKLYSIDLNGRNETLINTPA----------YASDPQWVGFM 446 +++ ++L +N PA Y+ D W+ F+ Sbjct: 350 AARIRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFL 391 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 19/173 (10%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 P + G+F APR+S +G ++ ++ + D++ + + A ERLT+ S+ Sbjct: 369 PAQAGDFD---YAPRYSPDGHW-IVFLRNPQLGDLWRIPAEGGAAERLTHDTADIWGWSW 424 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD S ++F + + +LY + S + D +A D G L+ F+ Sbjct: 425 LPDGSGVIFGRRVDIEARLYRLDLLDSSLHDLGVD-DAQAPDVA---HGHLV----FAQR 476 Query: 370 KFAIGV-------MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 K GV M + RL P +P GR L+F+ + G G Sbjct: 477 KPQFGVYQVIRDTMNGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYG 529 >gi|219848282|ref|YP_002462715.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542541|gb|ACL24279.1| peptidase S9 prolyl oligopeptidase active site domain protein [Chloroflexus aggregans DSM 9485] Length = 677 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 16/96 (16%) Query: 348 SYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPS 400 SYFDP SP G IAF + + GE + ++ +G + L D N++ W P Sbjct: 267 SYFDPQPSPDGSQIAFLRLNEERLLGEGRRVAIIPAEGGEPHDLTAHTDLNVEQFRWQPD 326 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 G+ ++FS GD + +Y I L G TP Y Sbjct: 327 GQGILFSAGWRGD--AHVYQIGLPG-------TPTY 353 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 8/99 (8%) Query: 351 DPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP SP G A + G + I ++ +G R + + P WSP GR L Sbjct: 22 DPRLSPDGQTAAVVWVTVDRVNNGYRRQIVLVPTNGGSLRRFTRGKHDRQPRWSPDGRWL 81 Query: 405 IFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQW 442 F +D + G ++Y I ++ G L P ASDP W Sbjct: 82 AFVSHRDDERG-QIYLIPVDGGEARQLTAMPNGASDPAW 119 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 104/284 (36%), Gaps = 65/284 (22%) Query: 207 TPSRDQI--------LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 TPSR I L +PR SP+ Q A + + Y +I P G+ R Sbjct: 5 TPSRFTIDDLYELGWLEDPRLSPDGQTAAVVWVTVDRVNNGYR--RQIVLVPTNGGSLRR 62 Query: 259 MILA-----PRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 PR+S +G+ A +S + DE IY + + +LT ++SPD Sbjct: 63 FTRGKHDRQPRWSPDGRWLAFVSHRDDERGQIYLIPVDGGEARQLTAMPNGASDPAWSPD 122 Query: 313 SSQIVFES----DREGKEQLYVMQSNGSDQKRISQDKE---------------------- 346 I F S D + +E M S +D + +E Sbjct: 123 GRWIAFLSPVSVDEQAREDAGEMPSPPADAWEARRAREQRQHDEELRIDPRVVTKLPYRS 182 Query: 347 -ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSNLQAPTWSPSGRS 403 SYFD W + + + V +D + RL + + P W P+G + Sbjct: 183 GTSYFDDRWR-------------QVYVVEVDDEDRTATPRRLTSGEIHYSTPVWLPNGEA 229 Query: 404 LIFSRKKDGDTGS-----KLYSIDLNGRNETLINTPAYAS-DPQ 441 L+ + +D + S + I L+G L +P ++ DPQ Sbjct: 230 LLSTATRDPEADSLFAYYDVVRIPLDGLPHAL-TSPGFSYFDPQ 272 >gi|119775549|ref|YP_928289.1| protease [Shewanella amazonensis SB2B] gi|119768049|gb|ABM00620.1| protease, putative [Shewanella amazonensis SB2B] Length = 1084 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 28/230 (12%) Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS----VDL 289 +++L + L R + + N + R + +G +A+I+ + A+ V + Sbjct: 285 DEVLPLTLTSDFTARRARWVNNPMDYVSDVRLAPSGDKAVITARSKVAIAATDGRRLVQV 344 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK-RISQDKEAS 348 A R+ N + S D + SD G+++L+ ++GSD +++QD A Sbjct: 345 GVPADSRIRNAVL-------SHDGQSVFGISDASGEQELWRFPADGSDGGVQLTQDASAM 397 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP----TWSPSGRSL 404 V SP G +A + G + + K G+ R++ L P WSP R L Sbjct: 398 RMSLVLSPDGRYLAHDDYDGNLYLYDI--KKGTNSRIVTGHQGL-GPYGDIIWSPDSRFL 454 Query: 405 IFSRKKDGDTGSK--LYSIDLNGRNETLIN------TPAYASDPQWVGFM 446 G + LYS++ R +L + +PA++ D +W+ F+ Sbjct: 455 ALGMNVMGQNRGQIVLYSLE-EKRQASLTSDKYESFSPAFSRDGEWLYFL 503 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ L RLT+ A SPD +Q+ F ++ +G +++Y+M G + KR+S Sbjct: 45 DLWLNRLGQAQASRLTSQSAEESQARISPDGTQVAFVANYDGTDEVYLMPIGGGEAKRVS 104 >gi|329963114|ref|ZP_08300894.1| WD40-like protein [Bacteroides fluxus YIT 12057] gi|328529155|gb|EGF56085.1| WD40-like protein [Bacteroides fluxus YIT 12057] Length = 1089 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y ++ T+++TNT + +++PD +V+ S+R G QLY D+K Sbjct: 336 DVYVTSVEYKTTKQITNTPYQERDINFAPDGRSLVYASERGGLWQLYTSSIVRKDEKLFT 395 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ AS F P +SP G +AF Sbjct: 396 YATELKEERLTHSDVAS-FQPQYSPDGKEVAF 426 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + ++T + + +SPD QI F SDR G +Y++ G + +R++ Sbjct: 45 DIYTVPVAGGRATQVTTNPAYDTAPVWSPDGKQIAFASDRLGSMDVYLVAKEGGEPRRLT 104 >gi|85709083|ref|ZP_01040149.1| hypothetical protein NAP1_07570 [Erythrobacter sp. NAP1] gi|85690617|gb|EAQ30620.1| hypothetical protein NAP1_07570 [Erythrobacter sp. NAP1] Length = 661 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G+ IAF+ + + VM G R + ++ + AP W+P G +L +S +DG+ Sbjct: 74 SPDGETIAFSWDITGQSELWVMPASGGVPRQVTFETGVGAPVWTPDGSALFYSADRDGNE 133 Query: 415 GSKLYSIDLNGRNETLINTPAYASD 439 + + +G +ET I PA D Sbjct: 134 QPGYFVLTPDGMSETEI-LPAARGD 157 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 309 YSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASY--FDPVWSPQGDLIAFT 364 ++PD S + + +DR+G EQ +V+ +G + I + F + A T Sbjct: 116 WTPDGSALFYSADRDGNEQPGYFVLTPDGMSETEILPAARGDFRIFGGFAEDGSFIYAST 175 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I DG+ E L+ + L A + SP+G+ I + G+ LY +DL Sbjct: 176 ARGAGVFDIYRGTMDGASELLVESELGLAARSISPNGKYAIVTETV-GEDADNLYLLDLA 234 Query: 425 GRNETLINTP 434 + T I+ P Sbjct: 235 TKEMTTISKP 244 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT- 364 +A+ SPD I F D G+ +L+VM ++G ++++ E PVW+P G + ++ Sbjct: 70 AANLSPDGETIAFSWDITGQSELWVMPASGGVPRQVT--FETGVGAPVWTPDGSALFYSA 127 Query: 365 -KFSGEKFAIGVMKKDGSQE 383 + E+ V+ DG E Sbjct: 128 DRDGNEQPGYFVLTPDGMSE 147 >gi|218265125|ref|ZP_03478707.1| hypothetical protein PRABACTJOHN_04417 [Parabacteroides johnsonii DSM 18315] gi|218221580|gb|EEC94230.1| hypothetical protein PRABACTJOHN_04417 [Parabacteroides johnsonii DSM 18315] Length = 1088 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S NG+ + + D IY+V +LT + +SPD S+IVF SDR Sbjct: 29 PAISPNGETIAFTYKGD----IYTVPANGGKATQLTTHPAHDTRPVWSPDGSKIVFASDR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASY 349 G ++VM G K+++ Y Sbjct: 85 NGNFDIFVMDKEGGSPKQLTTHSANEY 111 Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 14/138 (10%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SP+ I F K +Y + +NG +++ A PVWSP G I F Sbjct: 32 SPNGETIAFTY----KGDIYTVPANGGKATQLTT-HPAHDTRPVWSPDGSKIVFASDRNG 86 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS---------KLYS 420 F I VM K+G + L S + P + +++S DT ++Y Sbjct: 87 NFDIFVMDKEGGSPKQLTTHSANEYPETFSDAKHILYSAAIQQDTKDSQFPSGQFPQIYR 146 Query: 421 IDLNGRNETLINTPAYAS 438 I L+G L ++ A S Sbjct: 147 ISLDGGRPELYSSLAMES 164 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 9/69 (13%) Query: 351 DPVW------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP+W SP G+ IAFT + G+ + V G +L ++ P WSP G + Sbjct: 22 DPLWMRYPAISPNGETIAFT-YKGDIYT--VPANGGKATQLTTHPAHDTRPVWSPDGSKI 78 Query: 405 IFSRKKDGD 413 +F+ ++G+ Sbjct: 79 VFASDRNGN 87 >gi|37676004|ref|NP_936400.1| hypothetical protein VVA0344 [Vibrio vulnificus YJ016] gi|37200544|dbj|BAC96370.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 1105 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 24/138 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ S G + ++ S +P+WSP G+ IAFT + Sbjct: 64 SPDGQRIAFTY----AGQIWLIASKGGEAIPLTSADSYSE-NPIWSPDGESIAFTT---D 115 Query: 370 KFAIG----VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL------- 418 +F G V G +RL S +SP G+ + F + GD S L Sbjct: 116 RFGPGDVFLVSANGGDAKRLTYHFSKDVPYAFSPDGQEVYFRSSRIGDIESSLNNGFAGS 175 Query: 419 -----YSIDLNGRNETLI 431 YS+D++G E L+ Sbjct: 176 ASAQIYSVDVSGGREKLL 193 Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 23/115 (20%) Query: 256 FRSMILAP-----RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 R + L+P F+ G+ LI+ + EA+ + S D S + +S Sbjct: 58 LRDIALSPDGQRIAFTYAGQIWLIASKGGEAIPLTSADSYSE-------------NPIWS 104 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGDLIAF 363 PD I F +DR G ++++ +NG D KR++ K+ Y +SP G + F Sbjct: 105 PDGESIAFTTDRFGPGDVFLVSANGGDAKRLTYHFSKDVPY---AFSPDGQEVYF 156 >gi|268318113|ref|YP_003291832.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335647|gb|ACY49444.1| peptidase S9 prolyl oligopeptidase active site domain protein [Rhodothermus marinus DSM 4252] Length = 766 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + LY++ ++GS R + + P W P+ D IAF + G K + V+ G + Sbjct: 75 RTHLYLVPTDGSTPPRAYTHGDRTASQPAWHPESDRIAFVRPVGGKPQLFVISLFGGEAE 134 Query: 385 LLVE-DSNLQAPTWSPSGRSLIFS 407 L + P WSP G L+F+ Sbjct: 135 QLTDFRHGASRPRWSPDGSLLLFT 158 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ P+S +I F GK QL+V+ G + ++++ + + P WSP G L+ FT Sbjct: 103 AWHPESDRIAFVRPVGGKPQLFVISLFGGEAEQLTDFRHGAS-RPRWSPDGSLLLFTATL 161 Query: 368 GEK 370 EK Sbjct: 162 SEK 164 >gi|254517195|ref|ZP_05129252.1| X-Pro dipeptidyl-peptidase, S15 family [gamma proteobacterium NOR5-3] gi|219674033|gb|EED30402.1| X-Pro dipeptidyl-peptidase, S15 family [gamma proteobacterium NOR5-3] Length = 654 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 37/244 (15%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + + DG +T S D PR+SP+ + +++ ED R+ Sbjct: 54 RTQIWMAPTDGGEAIPMT-SVDSSASRPRWSPDNKYLSFTASRGEDAKTQVWSLNRLGGD 112 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++ N + + +S +G R L++++ D DL + + I+ Sbjct: 113 AMQVTNVKQGVSDFAWSPDGSRLLLTIK-----DARPADLTEDEDDDKPRPHVID----- 162 Query: 310 SPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRIS---QDKEASYFDPVWSPQGDLI 361 +I F+ D +G ++ YV +I+ D E DPVWSP G + Sbjct: 163 -----RIQFKQDYQGYIDRRRKHFYVYTPGDDAPVQITFGDYDDE----DPVWSPDGKSV 213 Query: 362 AFTKFSGEK---------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 AF E + + V ++ +++ + ++PTWSP G+S+ + Sbjct: 214 AFVSDRSENPDLYYGSNIWVVAVDDENHRLQKVTADSGKERSPTWSPDGQSIAYISSTGP 273 Query: 413 DTGS 416 D G Sbjct: 274 DVGG 277 >gi|295135562|ref|YP_003586238.1| tricorn protease [Zunongwangia profunda SM-A87] gi|294983577|gb|ADF54042.1| tricorn protease [Zunongwangia profunda SM-A87] Length = 1081 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD I F K LY + ++G D K+I+ K Y PVWS G +AF Sbjct: 33 SPDGETIAFTY----KGNLYTVATSGGDAKQITFHKAHDYM-PVWSKDGKQLAFASDRYG 87 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIF 406 F + VM G L SN + P ++S +S+IF Sbjct: 88 NFDVFVMDALGGPATRLTYHSNDEQPFSFSADNKSVIF 125 >gi|317051521|ref|YP_004112637.1| WD-40 repeat-containing protein [Desulfurispirillum indicum S5] gi|316946605|gb|ADU66081.1| WD-40 repeat-containing protein [Desulfurispirillum indicum S5] Length = 943 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 10/224 (4%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKR-IGNFRS--MILAPRFSSNGKRALISVQKD 279 Q +V + +D R LM + RA R + RS L P+F + I ++ Sbjct: 317 QDEVYFVRHDGHQ--RQQLMAYDVKRAQLRSVAPVRSSRFSLHPKFGILITQPAICNNRN 374 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 MDIY +D S + RLT A+ +PD+ I+ + G+ L+++ +G + Sbjct: 375 WYMDIYHIDPDSGHSTRLTKCQRYRY-ATLTPDAEHIIAVQHQAGQSSLHLLNRDGVLLR 433 Query: 340 RISQDKEASY-FDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVEDSNLQA-PT 396 + Q + V P D + + + ++ + + +Q L+ + +QA P Sbjct: 434 ELWQGEPGEVPAHMVHHPHEDWLLISMWRQQQGWNLERFDLRTAQWTPLIRRAGIQAHPH 493 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + G ++FS DG YS++ +G L N A P Sbjct: 494 FDHDGSHILFSSDSDGIYNIHQYSLE-SGETTVLTNVRGGAFHP 536 >gi|298243201|ref|ZP_06967008.1| peptidase S41 [Ktedonobacter racemifer DSM 44963] gi|297556255|gb|EFH90119.1| peptidase S41 [Ktedonobacter racemifer DSM 44963] Length = 1093 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 31/183 (16%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ V + ER T + +SPD + F EG ++YVM + G +R++ Sbjct: 24 DLWVVRDEGGRAERWTAGVGEVSHPRFSPDGKFLAFVGREEGPSEVYVMSATGEPARRLT 83 Query: 343 -QDKEASYFDPVWSPQGDLIAFTKFSGE---KF-AIGVMKKDGSQERLL----------- 386 Q WSP G I + +G+ +F I + +G R L Sbjct: 84 FQGATCRVLG--WSPDGHEILYASNAGQFTPRFQTIFAISPEGGLPRALSYGMANAISYG 141 Query: 387 -----VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 V N++ P + + R + G G ++ NG + L+ +DP Sbjct: 142 SQGGVVLGRNIREPAY--------WKRYRGGTVGHLWCDVEGNGTFQRLLALDGNLADPC 193 Query: 442 WVG 444 WVG Sbjct: 194 WVG 196 >gi|258622162|ref|ZP_05717188.1| Periplasmic protease [Vibrio mimicus VM573] gi|258585486|gb|EEW10209.1| Periplasmic protease [Vibrio mimicus VM573] Length = 1085 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PRF+ + L + + +VD QS T +I+ SPD QI F Sbjct: 4 PRFTLSSALVLTFFSTAPTLSLANVDTQSEVA-HAAPTWLRDIA--LSPDGKQIAFTY-- 58 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---VMKKD 379 Q++++ + G + +++ S PVWSP +AFT ++ +G ++ Sbjct: 59 --AGQIWLVPAQGGEAIALTESGIYSE-APVWSPDSQSLAFTT---NRYGMGDVFILAIQ 112 Query: 380 GSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDT-----------GSKLYSIDLNGRN 427 G + R L P +S G+ L FS ++ GD ++LYS+ + G Sbjct: 113 GGESRRLTYHGAKDTPYAFSADGKQLYFSSRRLGDEKANANVKQGGFTAQLYSVPVTGGR 172 Query: 428 ETLI 431 E L+ Sbjct: 173 EQLV 176 >gi|116622694|ref|YP_824850.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225856|gb|ABJ84565.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 853 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 9/110 (8%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FD--PVWSPQGDLIAFT 364 ++S D ++VFE Q++V +++GS+ +R+ E Y D P S G+ IAF+ Sbjct: 426 NFSGDGERLVFERG----HQIWVARTDGSEARRVEGVPEWYYGMDSLPALSAHGEWIAFS 481 Query: 365 KFS-GEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 + G + V+ G + R L D+ + P W+P + +I+S + G Sbjct: 482 RPQIGPHGDLWVIPSAGGKARRLTFDTRISTGPVWTPDDQWIIYSSMRGG 531 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 29/154 (18%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SA++SPD S I F + G Q++V D +I+ + P WSP+ D I F++ Sbjct: 342 SATFSPDGSMIAFLNTANGPAQIWVKNLAQGDPIQITSGNLPA-VQPHWSPKNDQIVFSR 400 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-------KKDGDTGSKL 418 + I + G R L+ + P +S G L+F R + DG ++ Sbjct: 401 ---QGQGIWSVPPLGGTPRQLIRPG--RNPNFSGDGERLVFERGHQIWVARTDGSEARRV 455 Query: 419 -------YSIDLNGRNETLINTPAYASDPQWVGF 445 Y +D + PA ++ +W+ F Sbjct: 456 EGVPEWYYGMD---------SLPALSAHGEWIAF 480 >gi|163846645|ref|YP_001634689.1| peptidase S9 prolyl oligopeptidase [Chloroflexus aurantiacus J-10-fl] gi|222524445|ref|YP_002568916.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667934|gb|ABY34300.1| peptidase S9 prolyl oligopeptidase active site domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448324|gb|ACM52590.1| peptidase S9 prolyl oligopeptidase active site domain protein [Chloroflexus sp. Y-400-fl] Length = 678 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Query: 351 DPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP SP G +A + G + I ++ DG Q R + P WSP GR + Sbjct: 22 DPRLSPDGRYVAVVWVTVDRVGNGYRRHIVLVATDGGQIRRFTRGKQDRQPRWSPDGRWI 81 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQW 442 F +D + G ++Y I ++G I + P ASDP W Sbjct: 82 AFVSNRDDERG-QIYIIPVDGGEARQITSHPNGASDPAW 119 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 14/104 (13%) Query: 348 SYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPS 400 SYFDP SP G IAF + + GE + ++ G + L D N++ W P Sbjct: 268 SYFDPRPSPDGTQIAFLRLNESRLLGEGKRVAIIPATGGEPHDLTAHTDLNVEQFHWQPD 327 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNG----RN-ETLINTPAYASD 439 G+ ++FS GD + +Y I L G RN TL+ P S+ Sbjct: 328 GQGVLFSAGWRGD--AHVYQIGLPGTPTYRNGATLVGGPRIVSE 369 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%) Query: 263 PRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFI----NISASYSPDSSQIV 317 PR S +G+ A++ V D + Y + AT+ F + +SPD I Sbjct: 23 PRLSPDGRYVAVVWVTVDRVGNGYRRHIVLVATDGGQIRRFTRGKQDRQPRWSPDGRWIA 82 Query: 318 FESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 F S+R+ + Q+Y++ +G + ++I+ + DP WSP G IAF Sbjct: 83 FVSNRDDERGQIYIIPVDGGEARQITSHPNGAS-DPAWSPDGRYIAF 128 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQE 383 + + ++ ++G +R ++ K+ P WSP G IAF + E+ I ++ DG + Sbjct: 47 RRHIVLVATDGGQIRRFTRGKQDR--QPRWSPDGRWIAFVSNRDDERGQIYIIPVDGGEA 104 Query: 384 RLLVEDSNLQA-PTWSPSGRSLIF 406 R + N + P WSP GR + F Sbjct: 105 RQITSHPNGASDPAWSPDGRYIAF 128 >gi|94967925|ref|YP_589973.1| hypothetical protein Acid345_0896 [Candidatus Koribacter versatilis Ellin345] gi|94549975|gb|ABF39899.1| hypothetical protein Acid345_0896 [Candidatus Koribacter versatilis Ellin345] Length = 656 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 310 SPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + D+ Q+VF + + +L+V+ + + I + P +SP G +A+ KFS Sbjct: 543 AADNGQLVFSALTGHHRMELFVLSNGKPEPLHIENARF-----PAFSPDGRWLAYAKFSN 597 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + + + K D ER L S QA P W ++LI++ D G L+ L R+ Sbjct: 598 SSWHLTLRKLDNGNERHLGTASCNQAYPAWVRDSQTLIYA----SDCGRGLWQTTLESRS 653 >gi|269928432|ref|YP_003320753.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787789|gb|ACZ39931.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 649 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 310 SPDSSQIVF---ESDRE---GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD +QI++ DRE G Q+++ +GS+ +R++ E + VWSP G IAF Sbjct: 23 SPDGTQILYTLSAVDRETKKGSSQIWLCGIDGSNPRRLTWSGERNSGG-VWSPDGRRIAF 81 Query: 364 TKFSGEKFAIGVMKKD--GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 EK I V+ D G + + + WSP G + ++ D Sbjct: 82 VSNRVEKAGIFVLDLDRPGEAREITRHNQAISDLAWSPDGTRIAYTTTFD 131 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 258 SMILAPRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +M P+ S +G + L ++ K + I+ + + RLT + N +SP Sbjct: 15 TMAGEPQVSPDGTQILYTLSAVDRETKKGSSQIWLCGIDGSNPRRLTWSGERNSGGVWSP 74 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 D +I F S+R K ++V+ + + R + D WSP G IA+T Sbjct: 75 DGRRIAFVSNRVEKAGIFVLDLDRPGEAREITRHNQAISDLAWSPDGTRIAYT 127 >gi|152965662|ref|YP_001361446.1| hypothetical protein Krad_1696 [Kineococcus radiotolerans SRS30216] gi|151360179|gb|ABS03182.1| WD40 domain protein beta Propeller [Kineococcus radiotolerans SRS30216] Length = 285 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 283 DIYSVDLQSNATER-LTNT-LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D++ + + AT R LT+T L + S+SPD + + REG + + + S + R Sbjct: 122 DLFLISAGTGATVRKLTSTRLIVESDPSFSPDGKSVAYR--REGAIWIQTIATGQSIRWR 179 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-------IGVMKKDGSQERLLVEDSNLQ 393 + +P +SP G IA+ + G++ A I G + + D+N Sbjct: 180 VGA------INPQYSPDGTKIAYQVYEGDEPAYNRGDGRIWYAPVTGGTPKDTLIDANAD 233 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 WSP G + FS G+ ++ GR Sbjct: 234 DFVWSPDGTAFAFSAASTGENAYTIFLARTTGR 266 >gi|282878207|ref|ZP_06287003.1| WD40-like protein [Prevotella buccalis ATCC 35310] gi|281299625|gb|EFA91998.1| WD40-like protein [Prevotella buccalis ATCC 35310] Length = 1068 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY--VMQSNGSDQKR 340 D+Y +++ T+++T+T S +SPD IV+ S+REG Q+Y M++ Q Sbjct: 331 DVYVTNIEYKTTKQITDTPEQERSIEFSPDGLAIVYASEREGLWQIYQTTMKNKAEKQFA 390 Query: 341 ISQDKE------ASY--FDPVWSPQGDLIAF 363 + D + ++Y F P +SP G IAF Sbjct: 391 YATDLQEERLIHSAYTSFQPQYSPDGKSIAF 421 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN L++ S SPD I F K ++ + ++G ++++ + + P+WSP Sbjct: 20 TNPLWMR-HTSISPDGQTIAFSY----KGDVFTVPASGGQARQLTSNAAYDSY-PIWSPD 73 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 G IAF I VM K G + + L S + P ++FS Sbjct: 74 GKKIAFASSREGSLDIFVMDKFGGEPKRLTTRSTNETPIAWRDNEHILFS 123 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++V +LT+ + +SPD +I F S REG ++VM G + KR++ Sbjct: 44 DVFTVPASGGQARQLTSNAAYDSYPIWSPDGKKIAFASSREGSLDIFVMDKFGGEPKRLT 103 >gi|298244880|ref|ZP_06968686.1| Acylaminoacyl-peptidase [Ktedonobacter racemifer DSM 44963] gi|297552361|gb|EFH86226.1| Acylaminoacyl-peptidase [Ktedonobacter racemifer DSM 44963] Length = 695 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 29/230 (12%) Query: 220 SPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFRSMILA------PRFSSNGK 270 SP+ ++VA+ + +ED LR L R+D + G R + + P ++ + + Sbjct: 24 SPDGRRVAFEMHYAEREEDTLRSALYLLRLDEQGQAEGEPRQLTRSVKSESFPTWAPDSR 83 Query: 271 RAL-ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQ 327 R L +S ++ E ++ +D +LT L A++SPD I F ++ E ++ Sbjct: 84 RLLFLSDREGEQNQLWLIDTDGGEARKLTTMLHGVNEATWSPDGRWIAFAASAELEDEDD 143 Query: 328 LYVMQSNGSDQKRISQDKEASYF-----DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS- 381 L V + S+ +R +D+E Y DP + G + FA+ ++GS Sbjct: 144 LLVGLKSLSESERKKRDEERRYRLRVVNDPDYRSDGR--GYYDTQAHLFAMPAPGENGSV 201 Query: 382 ---QERLLVEDSNLQA-PTWSPSGRSL--IFSRKKDGDTG---SKLYSID 422 Q R L A P W+P + + + +R++D G L++ID Sbjct: 202 DPAQIRRLTRGRYEHAQPVWTPDSQEIGVLSNRREDRFMGIWVRDLWAID 251 >gi|116624299|ref|YP_826455.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227461|gb|ABJ86170.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 931 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 27/231 (11%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-V 276 RF+P+ + V YA + + ++ M + + +G + +L+ S G+ A+ S Sbjct: 413 RFAPDGRSVIYAATFEGQAVELFSMQPGSPESSRPLGFSSTGVLS--ISRTGEMAVSSNC 470 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D D Q + N+ SA + PD Q+ M++ Sbjct: 471 RIDFWGDCVGTLAQKPVAGGAPREILGNVRSADWMPDGKQLAVS-----------MRAAN 519 Query: 336 SDQKRISQDKEASYF---------DPVWSPQGDLIAFTK--FSGEKFAIGVMKKDGSQER 384 ++R+ F DP SP GDL+AF + G ++ V+ G + Sbjct: 520 GKRERLEFPIGKVLFEASGTGWAGDPRVSPGGDLVAFADHYYFGNDGSVAVVDLQGHRRT 579 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 L + LQ WS G+ + F+ +G+ S +Y++ L+G + PA Sbjct: 580 LTRKFQCLQGLAWSLGGKEIWFTGCNEGNLAS-IYAVTLSGALRLVAQVPA 629 >gi|312199549|ref|YP_004019610.1| serine/threonine protein kinase [Frankia sp. EuI1c] gi|311230885|gb|ADP83740.1| serine/threonine protein kinase [Frankia sp. EuI1c] Length = 744 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 19/119 (15%) Query: 308 SYSPDSSQIVFES--DREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S SPD +V S D+ G+ LY+ +G +R+ EAS DP WSP G+ IA+ Sbjct: 539 SLSPDGKFLVLRSTTDQTGQPNPGLYISSIDGKTVRRLDTQPEAS--DPSWSPDGERIAY 596 Query: 364 ----TKFSGEKFAIGVMKKDGSQERLLVED--------SNLQA-PTWSPSGRSLIFSRK 409 G F + + G +D NL + PTWSP G+ L F R+ Sbjct: 597 WSNTVAGGGGGFLVLISTIPGQAAVPFNKDEFISEGDKPNLDSEPTWSPDGKYLAFVRQ 655 >gi|282880946|ref|ZP_06289637.1| WD40-like protein [Prevotella timonensis CRIS 5C-B1] gi|281305169|gb|EFA97238.1| WD40-like protein [Prevotella timonensis CRIS 5C-B1] Length = 1068 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY--VMQSNGSDQKR 340 D+Y +++ T+++T+T S +SPD IV+ S+REG Q+Y M++ Q Sbjct: 331 DVYVTNIEYKTTKQITDTPEQERSIEFSPDGLAIVYASEREGLWQIYQTTMKNKAEKQFA 390 Query: 341 ISQDKE------ASY--FDPVWSPQGDLIAF 363 + D + ++Y F P +SP G IAF Sbjct: 391 YATDLQEERLIHSAYTSFQPQYSPDGKSIAF 421 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++V +LT+ + +SPD +I F S REG +YVM G + KR++ Sbjct: 44 DVFTVPASGGQARQLTSNAAYDSYPIWSPDGKKIAFASSREGSLDIYVMDKFGGEPKRLT 103 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 +N L++ S SPD I F K ++ + ++G ++++ + + P+WSP Sbjct: 20 SNPLWMR-HTSISPDGQTIAFSY----KGDVFTVPASGGQARQLTSNAAYDSY-PIWSPD 73 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 G IAF I VM K G + + L S + P ++FS Sbjct: 74 GKKIAFASSREGSLDIYVMDKFGGEPKRLTTRSTNETPIAWRDNEHILFS 123 >gi|299139848|ref|ZP_07033020.1| peptidase S41 [Acidobacterium sp. MP5ACTX8] gi|298598202|gb|EFI54368.1| peptidase S41 [Acidobacterium sp. MP5ACTX8] Length = 1127 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DI+ V A RLT+T I +SPD + I + + G +Y + + G KR Sbjct: 44 ADDIWLVSRDGGAARRLTSTSNITDGPFFSPDGNTIAYSATAAGNTDIYTIPATGGAPKR 103 Query: 341 ISQDKEASYFDPVWSPQG-DLIAFTKFSGEK--FAIGVMKKDGS--QERLLVEDSNLQAP 395 I+ +Y W+P G DL+ + + + F + + DGS ERL + + Sbjct: 104 ITYRPGGNYVT-GWTPDGHDLLMQSMQNAVRVYFQLYRVHADGSGLPERLPLPSAWYG-- 160 Query: 396 TWSPSGRSLIFS 407 T SP G L ++ Sbjct: 161 TLSPDGSHLAYN 172 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDRE 323 S G RA+ D I++V + LTN+ + ++SPD +I + SD Sbjct: 315 ISPTGVRAVFEAHGD----IFTVPAEKGDVRNLTNSSGSAERAPAWSPDGKRIAYFSDAT 370 Query: 324 GKEQLYVMQSNG-SDQKRISQDKEAS-YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 G+ +LY+ +G S K I + + Y+ P WSP I F+ + + V G Sbjct: 371 GEYKLYLRDQDGLSAPKVIDLGPDPTYYYSPTWSPDSKRIVFSDKRLNLWYVNVDPALGP 430 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFS 407 + + V D++L+ + P+G S FS Sbjct: 431 AKPIKV-DTDLRE-GFGPAGFSASFS 454 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +A SP + VFE+ + ++ + + D + ++ ++ P WSP G IA+ Sbjct: 312 NADISPTGVRAVFEAHGD----IFTVPAEKGDVRNLTNSSGSAERAPAWSPDGKRIAYFS 367 Query: 366 FSGEKFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKK 410 + ++ + + +DG ++ + + +PTWSP + ++FS K+ Sbjct: 368 DATGEYKLYLRDQDGLSAPKVIDLGPDPTYYYSPTWSPDSKRIVFSDKR 416 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 15/175 (8%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRS 258 ++R LT S P +SP+ +++AY + D ++YL D APK I G + Sbjct: 338 GDVRNLTNSSGSAERAPAWSPDGKRIAYFS-DATGEYKLYLRDQDGLSAPKVIDLGPDPT 396 Query: 259 MILAPRFSSNGKRALIS--------VQKDEAMD-IYSVDLQSNATERLTNTLFINISASY 309 +P +S + KR + S V D A+ + + ++ E F SAS+ Sbjct: 397 YYYSPTWSPDSKRIVFSDKRLNLWYVNVDPALGPAKPIKVDTDLREGFGPAGF---SASF 453 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SPDS I++ E + S + + D + +PV+ G + FT Sbjct: 454 SPDSQWILYARSLPSLEDAAFLYSIATGKTTQITDGMSHVTNPVFDKSGKYLYFT 508 >gi|269836774|ref|YP_003319002.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786037|gb|ACZ38180.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 655 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 43/245 (17%) Query: 210 RDQILFEPRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRF 265 R ++ +P+ SP+ VA+ Y E+ R + + P+ + + PR+ Sbjct: 13 RIAMVSDPQVSPDGTLVAFVVTRMYRKENCYRSGIWTVPVAGGEPRPLTAGTARDSTPRW 72 Query: 266 SSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---- 320 S +G+ A +S + + ++ + +LTN +SP + F S Sbjct: 73 SPDGRWLAFLSTRGGDKPQLWYLPADGGEARQLTNLPEGVEQPVWSPRGDALAFVSKVGP 132 Query: 321 ------------------DREG-----KEQLYVMQSNGSD----QKRISQDKEASYFDPV 353 D EG Q++V+ + S+ + R D + DP Sbjct: 133 EKQSDSDVRVIRTIRYRFDGEGFLDDKYRQIWVVPFDPSNPSMPEARQITDGPYEHRDPA 192 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMK-------KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 WSP G IAFT + +GV++ G ++ P WSP G ++ Sbjct: 193 WSPTGHEIAFTAARHPDWELGVLQDIWAVSAAGGPPRKITCAPGAWSEPVWSPDGTTIAL 252 Query: 407 SRKKD 411 D Sbjct: 253 LGPSD 257 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 7/99 (7%) Query: 351 DPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 DP SP G L+AF K + + I + G + R L + + P WSP GR Sbjct: 19 DPQVSPDGTLVAFVVTRMYRKENCYRSGIWTVPVAGGEPRPLTAGTARDSTPRWSPDGRW 78 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L F + GD Y G L N P P W Sbjct: 79 LAFLSTRGGDKPQLWYLPADGGEARQLTNLPEGVEQPVW 117 >gi|255015929|ref|ZP_05288055.1| putative Tricorn-like protease [Bacteroides sp. 2_1_7] Length = 1076 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 27/198 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D +Y ++ T ++TNT + +SPD +V+ ++REG Sbjct: 323 SPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGT 378 Query: 326 EQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +Y + + K+ + E + F P++SP G+ +AF + + + V Sbjct: 379 WGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLE---NRTTLRV 435 Query: 376 MKKDGSQERLLVEDSNL-------QAPTWSPSGRSLIFSRKKDG---DTGSKLYSIDLNG 425 + + Q R +++ L Q WSP + + G +T L D +G Sbjct: 436 INRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSG 495 Query: 426 RNETLINTPAYASDPQWV 443 L + D +WV Sbjct: 496 EVTNLTESGYSDGDAKWV 513 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD I F + +Y + S+G ++++ A PVWSP G IAF Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTT-HPAHDTRPVWSPDGQRIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 F I +M K+G + + L S + PT Sbjct: 84 RSGNFDIFLMNKEGGEPKRLTTHSTNEYPT 113 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD +I F S+R G +++M G + KR++ Sbjct: 45 DIYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNRSGNFDIFLMNKEGGEPKRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSTNEY 111 >gi|255558604|ref|XP_002520327.1| conserved hypothetical protein [Ricinus communis] gi|223540546|gb|EEF42113.1| conserved hypothetical protein [Ricinus communis] Length = 540 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 37/231 (16%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA- 249 + + V++ DG + R + P + F + P++ V Y++ + T D Sbjct: 274 SGIYVVNPDGLHRRMVYPG---LAFPTIWDPDRPGVVYSSTGPAFASATTQLTTNGDNNA 330 Query: 250 -PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 P R+G+ + L R V+ MD +V+ + R+ L+ + Sbjct: 331 FPDRMGD--GLCLG--------RVFRVVRTLYIMD--AVEGEKGGLYRVIEGLWDDTMCD 378 Query: 309 YSPDSSQIVFESDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW-SPQGDLIAF 363 +SPD IVF SDRE G LY + NG+ +++ Q + ++ SP G I F Sbjct: 379 WSPDGEWIVFCSDREEPGTGSFDLYFIHPNGTGLRKLLQSGSGGRVNHLYISPNGKSIVF 438 Query: 364 ----TKFSGEKFA----------IGVMKKDGSQERLLVEDS-NLQAPTWSP 399 T S E + I ++ DGS + L +S P W P Sbjct: 439 TTDYTAISAEPISNQQMFQPYGEIYIINLDGSGLKRLTHNSFEDGTPAWGP 489 >gi|298244157|ref|ZP_06967963.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297551638|gb|EFH85503.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 614 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 28/213 (13%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV-----DLQSNATERLTNTLFINI 305 +R N RS A FS +G+ +++SV +LQ A R + Sbjct: 9 ERYLNVRSATGA-SFSPDGQHISFLTNITGVAEVWSVSIDQPNLQEPAWPRQLTFRGERV 67 Query: 306 S-ASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S A+++P + ++ D G E QL+++ ++GS+ + +++ E + WSP G+ I Sbjct: 68 SGATFAPHADTLLVSGDIGGNERAQLFLLSADGSEFRALTEKPEVMHSFGGWSPDGERIV 127 Query: 363 FTKFSGEK----FAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKK------- 410 + S E+ F + M+ + RLL+E P +SP G+ ++ R + Sbjct: 128 YN--SNERDARFFDVYEMQVSTGECRLLLEQDGSNMPVRYSPDGKQVLVRRVESLSRNAL 185 Query: 411 ---DGDTG-SKLYSIDLNGRNETLINTPAYASD 439 D D+G ++ + DL G L TP +++D Sbjct: 186 ILIDIDSGEARDLTPDL-GEGAALHATPFWSAD 217 >gi|262384211|ref|ZP_06077347.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295109|gb|EEY83041.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1076 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 23/181 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T ++TNT + +SPD +V+ ++REG +Y + + K+ + Sbjct: 336 DVYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDEDKQFT 395 Query: 343 QDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 E + F P++SP G+ +AF + + + V+ + Q R +++ L Sbjct: 396 YAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLE---NRTTLRVINRKTKQVRTVLDGKYL 452 Query: 393 -------QAPTWSPSGRSLIFSRKKDG---DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 Q WSP + + G +T L D +G L + D +W Sbjct: 453 YSYSDGDQHFQWSPDSKWFLVDYISIGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKW 512 Query: 443 V 443 V Sbjct: 513 V 513 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD I F + +Y + S+G ++++ A PVWSP G IAF Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTT-HPAHDTRPVWSPDGQRIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 F + +M K+G + + L S + PT Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPT 113 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD +I F S+R G +++M G + KR++ Sbjct: 45 DIYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNRSGNFDVFLMNKEGGEPKRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSTNEY 111 >gi|254881960|ref|ZP_05254670.1| prolyl oligopeptidase [Bacteroides sp. 4_3_47FAA] gi|319641035|ref|ZP_07995740.1| prolyl oligopeptidase [Bacteroides sp. 3_1_40A] gi|254834753|gb|EET15062.1| prolyl oligopeptidase [Bacteroides sp. 4_3_47FAA] gi|317387345|gb|EFV68219.1| prolyl oligopeptidase [Bacteroides sp. 3_1_40A] Length = 706 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S S SPD QI + + + +YVM ++G + ++Q + +P W G Sbjct: 58 SLSISPDGKQIAYTVAYYSVPENKSHHVIYVMDADGKNNTLLTQ-TAWNESEPQWIKGGT 116 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF-SRKKDGDTGSK 417 IAF I M DG++ R++ + N++ ++SP G+ ++F S+ K G Sbjct: 117 KIAFLCNESGGSQIWEMNPDGTERRIISDFKGNIEGFSFSPDGKKILFISQIKYGQRTVD 176 Query: 418 LYSIDLNGRNETLINTPAYASDPQWV 443 LY DL + ++N Y +WV Sbjct: 177 LYP-DLPKASGIIVNDLMYKHWDEWV 201 >gi|317475671|ref|ZP_07934931.1| hypothetical protein HMPREF1016_01913 [Bacteroides eggerthii 1_2_48FAA] gi|316908127|gb|EFV29821.1| hypothetical protein HMPREF1016_01913 [Bacteroides eggerthii 1_2_48FAA] Length = 1086 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S NGK ++ D +Y + T+++TNT ++PD +V+ S+R G Sbjct: 322 LSPNGKEVAFVLRGD----VYVTSVDYKTTKQVTNTPCQERGVDFAPDGRSLVYASERGG 377 Query: 325 KEQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAF 363 QLY D+K + E A+ F P +SP G +AF Sbjct: 378 LWQLYTSAIVRKDEKLFTYATELKEERLTNSDAASFQPQYSPDGKEVAF 426 Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + +LT + +SPD +I F SDR G +Y++ G + +R++ Sbjct: 45 DIYTVPVDGGRAMQLTTNPAHDTEPVWSPDGKRIAFASDRMGSMDVYIVSKEGGEPRRLT 104 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 18/125 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD + I F K +Y + +G +++ + A +PVWSP G IAF Sbjct: 29 CAISPDGTTIAFTY----KGDIYTVPVDGGRAMQLTTNP-AHDTEPVWSPDGKRIAFASD 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + ++ K+G + R L S + P + FS D G L+S D+ Sbjct: 84 RMGSMDVYIVSKEGGEPRRLTTHSGSETP--------VAFS-----DAGHILFSADIMPS 130 Query: 427 NETLI 431 ET++ Sbjct: 131 AETVL 135 >gi|298376888|ref|ZP_06986842.1| MdsD protein [Bacteroides sp. 3_1_19] gi|298265872|gb|EFI07531.1| MdsD protein [Bacteroides sp. 3_1_19] Length = 1076 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 27/198 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D +Y ++ T ++TNT + +SPD +V+ ++REG Sbjct: 323 SPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGT 378 Query: 326 EQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +Y + + K+ + E + F P++SP G+ +AF + + + V Sbjct: 379 WGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLE---NRTTLRV 435 Query: 376 MKKDGSQERLLVEDSNL-------QAPTWSPSGRSLIFSRKKDG---DTGSKLYSIDLNG 425 + + Q R +++ L Q WSP + + G +T L D +G Sbjct: 436 INRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSG 495 Query: 426 RNETLINTPAYASDPQWV 443 L + D +WV Sbjct: 496 EVTNLTESGYSDGDAKWV 513 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD I F + +Y + S+G ++++ A PVWSP G IAF Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTT-HPAHDTRPVWSPDGQKIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 F + +M K+G + + L S + PT Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPT 113 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD +I F S+R G +++M G + KR++ Sbjct: 45 DIYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNRSGNFDVFLMNKEGGEPKRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSTNEY 111 >gi|295798165|emb|CAX69026.1| hypothetical protein, TolB-like family [uncultured bacterium] Length = 947 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 14/84 (16%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------- 326 E + IY ++L++ A +LT + ++ +Y+P+ IVF S+R G Sbjct: 264 EPIHIYEMNLKNGALRQLTRGEWSDLDPTYAPNG-DIVFVSERCGTSLQCNEYDKDETSC 322 Query: 327 QLYVMQSNGSDQKRISQDKEASYF 350 LYVM+ +GS +R+S +K+ Y Sbjct: 323 NLYVMKPDGSGIRRLSANKDGDYL 346 >gi|253567152|ref|ZP_04844602.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251943983|gb|EES84502.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 1095 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 336 DVYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 QDKE----------ASYFDPVWSPQGDLIAF 363 E + F+P +SP G IAF Sbjct: 396 YATELKEERLTNSDVASFNPKYSPDGKEIAF 426 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + ++T + + +SPDS QI F SDR G ++++ +G + +R++ Sbjct: 45 DIFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRMGSMDVFIVSKDGGEPRRLT 104 >gi|242046452|ref|XP_002461097.1| hypothetical protein SORBIDRAFT_02g040640 [Sorghum bicolor] gi|241924474|gb|EER97618.1| hypothetical protein SORBIDRAFT_02g040640 [Sorghum bicolor] Length = 669 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 + SP +VF S R G + LYV+ + + + + E + D P WSP G LIAF+ Sbjct: 469 AVSPCGRWLVFRSGRTGHKNLYVVDTARGEDGGVLRLTEGEWIDTMPSWSPDGSLIAFSS 528 Query: 366 FSGEK-----FAIGVMKKDGSQER 384 + F+I +++ DGS R Sbjct: 529 NRHDPANPAVFSIYLVRPDGSGLR 552 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 28/138 (20%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-- 365 S+SPD++ + D + V++S+GS KR + KE + F WSP + FT Sbjct: 361 SFSPDAAHLAVNGDFFMTPGIRVLRSDGS--KRWTVSKEPNLFYTTWSPTEPGVVFTSMG 418 Query: 366 --FSGEKFAIGVMKKDGSQERLLVEDSNLQA------------------PTWSPSGRSLI 405 F K + + + + L +DS ++ P SP GR L+ Sbjct: 419 PIFETTKATVRIARVEFDPADLTDDDSRVEVGVATVRPLTRPEAGNDAFPAVSPCGRWLV 478 Query: 406 FSRKKDGDTGSK-LYSID 422 F + G TG K LY +D Sbjct: 479 F---RSGRTGHKNLYVVD 493 >gi|320158147|ref|YP_004190525.1| protease-related protein [Vibrio vulnificus MO6-24/O] gi|319933459|gb|ADV88322.1| protease-related protein [Vibrio vulnificus MO6-24/O] Length = 1088 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 24/138 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ S G + ++ S +P+WSP G+ IAFT + Sbjct: 47 SPDGQRIAFTY----AGQIWLIASKGGEAIPLTSADSYSE-NPIWSPDGESIAFTT---D 98 Query: 370 KFAIG----VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD------------ 413 +F G V G +RL S +SP G+ + F + GD Sbjct: 99 RFGPGDVFLVSANGGDAKRLTYHFSKDVPYAFSPDGQEVYFRSSRIGDIESSVNNGFAGS 158 Query: 414 TGSKLYSIDLNGRNETLI 431 +++YS+D++G E L+ Sbjct: 159 ASAQIYSVDVSGGREKLL 176 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 23/115 (20%) Query: 256 FRSMILAP-----RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 R + L+P F+ G+ LI+ + EA+ + S D S + +S Sbjct: 41 LRDIALSPDGQRIAFTYAGQIWLIASKGGEAIPLTSADSYSE-------------NPIWS 87 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGDLIAF 363 PD I F +DR G ++++ +NG D KR++ K+ Y +SP G + F Sbjct: 88 PDGESIAFTTDRFGPGDVFLVSANGGDAKRLTYHFSKDVPY---AFSPDGQEVYF 139 >gi|319902329|ref|YP_004162057.1| WD40-like beta Propeller containing protein [Bacteroides helcogenes P 36-108] gi|319417360|gb|ADV44471.1| WD40-like beta Propeller containing protein [Bacteroides helcogenes P 36-108] Length = 716 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 19/166 (11%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-----NISASY 309 N M A +S G + Q+D A I D++ L+ N++ S Sbjct: 5 NLLLMSAAMTLASCGGGTKDAEQQDTAALINRSDIKIEGKRMTPEALWAMGRIGNVTVS- 63 Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGDLI 361 PD QI + + + +++VM ++G ++I+++ +E+ PVW G I Sbjct: 64 -PDEKQIAYSVAYYSVPENKSNNEIFVMNADGGSNRQITRNVWQESQ---PVWIKDGKKI 119 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 AF I M DG++ R L + D++++ ++SP G+ ++F Sbjct: 120 AFLCNESGSSQIWEMNSDGTERRQLTQYDNDIEGFSFSPDGKKILF 165 >gi|301311124|ref|ZP_07217053.1| MdsD protein [Bacteroides sp. 20_3] gi|300831187|gb|EFK61828.1| MdsD protein [Bacteroides sp. 20_3] Length = 1076 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 23/181 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T ++TNT + +SPD +V+ ++REG +Y + + K+ + Sbjct: 336 DVYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDEDKQFT 395 Query: 343 QDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 E + F P++SP G+ +AF + + + V+ + Q R +++ L Sbjct: 396 YAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLE---NRTTLRVINRKTKQVRTVLDGKYL 452 Query: 393 -------QAPTWSPSGRSLIFSRKKDG---DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 Q WSP + + G +T L D +G L + D +W Sbjct: 453 YSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKW 512 Query: 443 V 443 V Sbjct: 513 V 513 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD I F + +Y + S+G ++++ A PVWSP G IAF Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTT-HPAHDTRPVWSPDGQRIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 F + +M K+G + + L S + PT Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPT 113 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD +I F S+R G +++M G + KR++ Sbjct: 45 DIYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNRSGNFDVFLMNKEGGEPKRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSTNEY 111 >gi|209965114|ref|YP_002298029.1| prolyl oligopeptidase family protein [Rhodospirillum centenum SW] gi|209958580|gb|ACI99216.1| prolyl oligopeptidase family protein [Rhodospirillum centenum SW] Length = 688 Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDL-----QSNATERLTNTLFIN 304 KRIG P S +G+ A++ V D A D VDL +LT+ Sbjct: 35 KRIGT-------PALSPDGRSAVVPVTAYDTATDGRDVDLWLVPTAGGEARQLTSDPAAE 87 Query: 305 ISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 +SPD I F + R+G + QLYV+ G + +R+++ P W P IA Sbjct: 88 SEPQWSPDGRWIAFVARRDGDKAAQLYVLPVAGGEARRVTEVPTGVRL-PRWLPDSRRIA 146 Query: 363 F 363 F Sbjct: 147 F 147 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 T G + ++ G + R L D ++ P WSP GR + F ++DGD ++LY + Sbjct: 58 TATDGRDVDLWLVPTAGGEARQLTSDPAAESEPQWSPDGRWIAFVARRDGDKAAQLYVLP 117 Query: 423 L-NGRNETLINTPAYASDPQWV 443 + G + P P+W+ Sbjct: 118 VAGGEARRVTEVPTGVRLPRWL 139 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 10/110 (9%) Query: 306 SASYSPDSSQIV-----FESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + + SPD V +++ +G++ L+++ + G + ++++ D A +P WSP G Sbjct: 39 TPALSPDGRSAVVPVTAYDTATDGRDVDLWLVPTAGGEARQLTSDPAAES-EPQWSPDGR 97 Query: 360 LIAF-TKFSGEKFA-IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 IAF + G+K A + V+ G + R + E + ++ P W P R + F Sbjct: 98 WIAFVARRDGDKAAQLYVLPVAGGEARRVTEVPTGVRLPRWLPDSRRIAF 147 >gi|150005859|ref|YP_001300603.1| prolyl oligopeptidase family protein [Bacteroides vulgatus ATCC 8482] gi|294775569|ref|ZP_06741079.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides vulgatus PC510] gi|149934283|gb|ABR40981.1| prolyl oligopeptidase family protein [Bacteroides vulgatus ATCC 8482] gi|294450619|gb|EFG19109.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides vulgatus PC510] Length = 706 Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S S SPD QI + + + +YVM ++G + ++Q + +P W G Sbjct: 58 SLSISPDGKQIAYTVAYYSVPENKSHHVIYVMDADGKNNTLLTQ-TAWNESEPQWIKGGT 116 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF-SRKKDGDTGSK 417 IAF I M DG++ R++ + N++ ++SP G+ ++F S+ K G Sbjct: 117 KIAFLCNESGGSQIWEMNPDGTERRIISDFKGNIEGFSFSPDGKKILFISQIKYGQRTVD 176 Query: 418 LYSIDLNGRNETLINTPAYASDPQWV 443 LY DL + ++N Y +WV Sbjct: 177 LYP-DLPKASGIIVNDLMYKHWDEWV 201 >gi|329961886|ref|ZP_08299900.1| WD40-like protein [Bacteroides fluxus YIT 12057] gi|328531326|gb|EGF58170.1| WD40-like protein [Bacteroides fluxus YIT 12057] Length = 1085 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S NG + D IY V +LT + +SPD QI F SDR Sbjct: 29 RISPNGTEIAFCYKGD----IYKVPATGGTAIQLTTQDSYECTPIWSPDGKQIAFASDRY 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 G +++M S G + +R++ A+ ++P G + F+ Sbjct: 85 GNFDIFMMPSGGGNAQRLTT-HSANELPSAFTPDGKQVLFS 124 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 16/137 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SP+ ++I F K +Y + + G +++ +++ P+WSP G IAF Sbjct: 31 SPNGTEIAFCY----KGDIYKVPATGGTAIQLTT-QDSYECTPIWSPDGKQIAFASDRYG 85 Query: 370 KFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI------- 421 F I +M G +RL +N ++P G+ ++FS S L+ Sbjct: 86 NFDIFMMPSGGGNAQRLTTHSANELPSAFTPDGKQVLFSASIQDPASSALFPTGAMTELY 145 Query: 422 ---DLNGRNETLINTPA 435 GR E ++ TPA Sbjct: 146 KVPSTGGRTEQVLGTPA 162 >gi|218130952|ref|ZP_03459756.1| hypothetical protein BACEGG_02554 [Bacteroides eggerthii DSM 20697] gi|217986824|gb|EEC53156.1| hypothetical protein BACEGG_02554 [Bacteroides eggerthii DSM 20697] Length = 705 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD QI + + + +L+VM ++GS+ ++I+ D P W G IAF Sbjct: 60 SPDEKQIAYSVAYYSVPENKSNNELFVMNTDGSNNRQITCDNWQES-QPTWIKDGAKIAF 118 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 I M DG+ + L + D +++ ++SP G+ L+F Sbjct: 119 LCNETGSSQIWEMNPDGTARKQLTQYDGDIEGFSFSPDGKKLLF 162 >gi|150009324|ref|YP_001304067.1| putative Tricorn-like protease [Parabacteroides distasonis ATCC 8503] gi|149937748|gb|ABR44445.1| putative Tricorn-like protease [Parabacteroides distasonis ATCC 8503] Length = 1076 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 27/198 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D +Y ++ T ++TNT + +SPD +V+ ++REG Sbjct: 323 SPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGT 378 Query: 326 EQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +Y + + K+ + E + F P++SP G+ +AF + + + V Sbjct: 379 WGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLE---NRTTLRV 435 Query: 376 MKKDGSQERLLVEDSNL-------QAPTWSPSGRSLIFSRKKDG---DTGSKLYSIDLNG 425 + + Q R +++ L Q WSP + + G +T L D +G Sbjct: 436 INRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSG 495 Query: 426 RNETLINTPAYASDPQWV 443 L + D +WV Sbjct: 496 EVTNLTESGYSDGDAKWV 513 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD I F + +Y + S+G ++++ A PVWSP G IAF Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTT-HPAHDTRPVWSPDGQKIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 F + +M K+G + + L S + PT Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPT 113 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD +I F S+R G +++M G + KR++ Sbjct: 45 DIYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNRSGNFDVFLMNKEGGEPKRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSTNEY 111 >gi|157963221|ref|YP_001503255.1| peptidase S9 prolyl oligopeptidase [Shewanella pealeana ATCC 700345] gi|157848221|gb|ABV88720.1| peptidase S9 prolyl oligopeptidase active site domain protein [Shewanella pealeana ATCC 700345] Length = 680 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 352 PVWSPQGDLI--AFTKFSGEK----FAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSL 404 P+ SPQGD I T++ + + + KDG SQ+ L + T+SP G++L Sbjct: 40 PIISPQGDKIIAPVTQYDVPEDKGSTQLWLFDKDGDSQQALTAKGMRASEATFSPDGKTL 99 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQWVG 444 F K+D D ++Y + +NG E L + P +WVG Sbjct: 100 AFISKRDEDEAGQVYLLPMNGPGEAQKLTDVPGGVYGMKWVG 141 >gi|116624690|ref|YP_826846.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116227852|gb|ABJ86561.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 595 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 38/257 (14%) Query: 217 PRFSPNQQKVAYA-TYDDEDILRVY--LMDTRIDRA-PKRI--GNFRSMILAPRFSSNGK 270 PR +P+ Y T++D RV L I++ P+RI G +R +PR+S + + Sbjct: 36 PRINPDGTDAVYVETWNDRATDRVCANLWQVAIEKGTPQRITEGPWRDS--SPRWSPDSR 93 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 A IS + + I+ + E+LT+ S ++SPD + F +++L+V Sbjct: 94 LAWIS-DRTGSPQIWVRRM--GGAEKLTDLTAPPQSLAWSPDGKSLAFTM----RDRLFV 146 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----------SGEKFAIGVMKKDG 380 + + G + + + +P W P G I + GE +AI + DG Sbjct: 147 VPAAGGKPREFPLGELEIHGEPAWMPDGQSILVSAAPPPNAANVLQGGEIYAIRL--ADG 204 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIF---SRKKDGDTGSKLYSIDLNG-RNETL------ 430 ++ +L + P SP G + + K SKLY + +G R + L Sbjct: 205 TRRQLTQHPGPDEDPVPSPDGSRIAWIAREPKPQSYVVSKLYVANPDGSRAKVLAGSLDR 264 Query: 431 -INTPAYASDPQWVGFM 446 + P ++SD + + F+ Sbjct: 265 DVRHPQWSSDSRTIYFL 281 >gi|326424405|ref|NP_763403.2| protease-like protein [Vibrio vulnificus CMCP6] gi|319999795|gb|AAO08393.2| Protease-related protein [Vibrio vulnificus CMCP6] Length = 1088 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 24/138 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ S G + ++ S +P+WSP G+ IAFT + Sbjct: 47 SPDGQRIAFTY----AGQIWLIASKGGEAIPLTSADSYSE-NPIWSPDGESIAFTT---D 98 Query: 370 KFAIG----VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD------------ 413 +F G V G +RL S +SP G+ + F + GD Sbjct: 99 RFGPGDVFLVSANGGDAKRLTYHFSKDVPYAFSPDGQEVYFRSSRIGDIESSVNNGFAGS 158 Query: 414 TGSKLYSIDLNGRNETLI 431 +++YS+D++G E L+ Sbjct: 159 ASAQIYSVDVSGGREKLL 176 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 23/115 (20%) Query: 256 FRSMILAP-----RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 R + L+P F+ G+ LI+ + EA+ + S D S + +S Sbjct: 41 LRDIALSPDGQRIAFTYAGQIWLIASKGGEAIPLTSADSYSE-------------NPIWS 87 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGDLIAF 363 PD I F +DR G ++++ +NG D KR++ K+ Y +SP G + F Sbjct: 88 PDGESIAFTTDRFGPGDVFLVSANGGDAKRLTYHFSKDVPY---AFSPDGQEVYF 139 >gi|34540516|ref|NP_904995.1| prolyl oligopeptidase family protein [Porphyromonas gingivalis W83] gi|34396829|gb|AAQ65894.1| prolyl oligopeptidase family protein [Porphyromonas gingivalis W83] Length = 648 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD V+ + +L+ + +GS +K+I+ D E++ + P W G IAF Sbjct: 12 SPDGKTAVYAVSFPDVKTNKATRELFTVNLDGSGRKQIT-DTESNEYAPAWMADGKRIAF 70 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK-KDGDTGSKLYSI 421 G + VM DG++ R L + + +SP + ++F++ K G +Y Sbjct: 71 MSNEGGSMQLWVMNADGTERRQLSNIEGGITGFLFSPDEKQVLFTKDIKFGKRTKDIYP- 129 Query: 422 DLNGRNETLINTPAYASDPQWV 443 DL+ +I Y +WV Sbjct: 130 DLDKATGRIITDLMYKHWDEWV 151 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 265 FSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S +GK A+ +V ++++V+L + +++T+T + ++ D +I F Sbjct: 11 LSPDGKTAVYAVSFPDVKTNKATRELFTVNLDGSGRKQITDTESNEYAPAWMADGKRIAF 70 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S+ G QL+VM ++G++++++S + E ++SP + FTK Sbjct: 71 MSNEGGSMQLWVMNADGTERRQLS-NIEGGITGFLFSPDEKQVLFTK 116 >gi|294508436|ref|YP_003572494.1| acylaminoacyl-peptidase [Salinibacter ruber M8] gi|294344764|emb|CBH25542.1| acylaminoacyl-peptidase [Salinibacter ruber M8] Length = 703 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 40/210 (19%) Query: 262 APRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +PR+S +G + A S ++ +IY ++ N T R+T S+SPD + + F Sbjct: 115 SPRWSPDGSKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAPSGLSWSPDGAHLAF-- 172 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM---- 376 ++V + R + A + +P P+ + T+ + E GV+ Sbjct: 173 ------SMHVSAPEPTLASRPEPPEGADWAEP---PRVE----TRLNHESDGTGVLDYGH 219 Query: 377 ------KKDGSQER-LLVEDSNLQA-PTWSPSGRSLIFSRKKDGD-----TGSKLYSIDL 423 + DG + R + D N + P W+P G +L++S + + S+LY + + Sbjct: 220 DHLFVVRADGGRARQVTAGDYNHSSRPVWTPDGEALLYSASRHDNWERERRNSELYRVPV 279 Query: 424 NGRNETLI-------NTPAYASDPQWVGFM 446 +G T + +TP + D + + ++ Sbjct: 280 DGGESTPLTDRFGPDHTPRVSPDGETIAYL 309 >gi|83815698|ref|YP_446500.1| acylaminoacyl-peptidase [Salinibacter ruber DSM 13855] gi|83757092|gb|ABC45205.1| acylaminoacyl-peptidase [Salinibacter ruber DSM 13855] Length = 703 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 40/210 (19%) Query: 262 APRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +PR+S +G + A S ++ +IY ++ N T R+T S+SPD + + F Sbjct: 115 SPRWSPDGSKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAPSGLSWSPDGTHLAF-- 172 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM---- 376 ++V + R + A + +P P+ + T+ + E GV+ Sbjct: 173 ------SMHVSAPEPTLASRPEPPEGADWAEP---PRVE----TRLNHESDGTGVLDYGH 219 Query: 377 ------KKDGSQER-LLVEDSNLQA-PTWSPSGRSLIFSRKKDGD-----TGSKLYSIDL 423 + DG + R + D N + P W+P G +L++S + + S+LY + + Sbjct: 220 DHLFVVRADGGRARQVTAGDYNHSSRPVWTPDGEALLYSANRHDNWERERRNSELYRVPV 279 Query: 424 NGRNETLI-------NTPAYASDPQWVGFM 446 +G T + +TP + D + + ++ Sbjct: 280 DGGESTPLTDRFGPDHTPRVSPDGETIAYL 309 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 13/108 (12%) Query: 310 SPDSSQIVFE-------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD SQIV++ DR L+ + ++G+D +++ + A P WSP G IA Sbjct: 69 SPDGSQIVYQRRGMDVMEDRR-TSALWRLDADGTDHTKLTS-RTADESSPRWSPDGSKIA 126 Query: 363 FT---KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 FT + G + + ++++ + +E++ +WSP G L FS Sbjct: 127 FTSSDEEHGTEIYVHWVEQNKTARITQLENAP-SGLSWSPDGTHLAFS 173 >gi|103487490|ref|YP_617051.1| peptidase S9, prolyl oligopeptidase active site region [Sphingopyxis alaskensis RB2256] gi|98977567|gb|ABF53718.1| peptidase S9, prolyl oligopeptidase active site region [Sphingopyxis alaskensis RB2256] Length = 720 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 11/132 (8%) Query: 301 LFINISASYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 L I SPD I + +DR + + G + QD A F P Sbjct: 68 LAIAADPQISPDGRHIAYVRRANDIMTDRAVSSIWLIDTATGRETPLAGQDGPA--FSPR 125 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ +G + V DG + RL ++ + TW+P GRS+ ++ Sbjct: 126 WSPDGSRLAYVSAAGGSAQLWVRWMDGGEAVRLTGLPTSPSSLTWAPDGRSIAYTMLVK- 184 Query: 413 DTGSKLYSIDLN 424 D G++L S N Sbjct: 185 DEGARLGSAPAN 196 >gi|88703636|ref|ZP_01101352.1| peptidase S9B family protein [Congregibacter litoralis KT71] gi|88702350|gb|EAQ99453.1| peptidase S9B family protein [Congregibacter litoralis KT71] Length = 689 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 37/168 (22%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + F +++ +P S+ + L Q A+DI+ ++ N SPD Sbjct: 18 VAAFGALLFSPSLSAQESQTLPPFQ---ALDIFEIEWALNP--------------QISPD 60 Query: 313 SSQIVF--------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S Q+V+ E R G L+++ Q ++S E + VWSP+GD IA+ Sbjct: 61 SQQVVYRRMGFDIMEDRRRGN--LWLVDIASQRQHKLSS-FEGNESSAVWSPRGDRIAYV 117 Query: 365 KFSG--EKFAIGVMKKDGSQE----RLLVEDSNLQAPTWSPSGRSLIF 406 + +G E I + +G Q RL +++ WSP GR L F Sbjct: 118 RSAGDDEGAEIYMHWLEGGQSARVTRLPATPKDIR---WSPDGRHLAF 162 >gi|297183395|gb|ADI19529.1| dipeptidyl aminopeptidases/acylaminoacyl-peptidases [uncultured Chloroflexi bacterium HF0770_09E03] Length = 462 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 23/176 (13%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGKE 326 N +R + I+ + RLT+ + + S + PD I+FES R E E Sbjct: 184 NYRRDRVGYHPKGYRHIFIIPADGGTPHRLTHGDWHHDSYEWMPDGKAIIFESLRVEDAE 243 Query: 327 ------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKF---AIGV 375 ++Y + N + +++S+ K PV SP G IA+T +S + + + Sbjct: 244 YQWRESEIYSVDVNSGEIRQLSKRKGPDR-GPVPSPDGRYIAYTGHDWSDDTYIEEGLYF 302 Query: 376 MKKDGSQ-ERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 MK DGS+ ER+ E NL TWS G + ++ +G S LY L+G+ Sbjct: 303 MKADGSKPERIAGEMGRRPGNL---TWSEDGSGVYYNAAMEGT--SNLYFAPLSGK 353 >gi|319899993|ref|YP_004159721.1| peptidase S41 [Bacteroides helcogenes P 36-108] gi|319415024|gb|ADV42135.1| peptidase S41 [Bacteroides helcogenes P 36-108] Length = 1083 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y ++ T+++TNT F ++PD +V+ S+R G QLY D+K Sbjct: 336 DVYVTSVEYKTTKQVTNTPFQERDIDFAPDGRSLVYASERGGLWQLYTSSIVRKDEKLFT 395 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ AS F P +SP G +AF Sbjct: 396 YATELKEERLTNSDVAS-FRPRYSPDGKEVAF 426 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + ++T + + +SPDS I F SDR G +Y++ G + +R++ Sbjct: 45 DIYTVSVTGGRATQITTNAAYDTTPVWSPDSKWIAFASDRLGSMDVYLVSKEGGEPRRLT 104 >gi|167625402|ref|YP_001675696.1| peptidase S9 prolyl oligopeptidase [Shewanella halifaxensis HAW-EB4] gi|167355424|gb|ABZ78037.1| peptidase S9 prolyl oligopeptidase active site domain protein [Shewanella halifaxensis HAW-EB4] Length = 680 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 352 PVWSPQGDLI--AFTKFSGEK----FAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSL 404 P+ SP GD I T++ + + + K+GS +R L + PT+SP G +L Sbjct: 40 PIISPSGDRIIAPVTQYDVPEDKGSTQLWLFDKEGSTQRALTAKGLRVSEPTFSPDGNTL 99 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQWVG 444 F K+D D ++Y + +NG E L + P +WVG Sbjct: 100 AFISKRDEDEAGQVYLLPMNGPGEAQKLTDVPGGVYGMKWVG 141 >gi|159896747|ref|YP_001542994.1| periplasmic component of the Tol biopolymer transport system-like protein [Herpetosiphon aurantiacus ATCC 23779] gi|159889786|gb|ABX02866.1| Periplasmic component of the Tol biopolymer transport system-like [Herpetosiphon aurantiacus ATCC 23779] Length = 331 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 19/132 (14%) Query: 308 SYSPDSSQIVFESDREG----------KEQLYVMQSNGSDQKRISQD-KEASYFDPVWSP 356 ++SPD + I + + LY+M S+G +++ I + + S WSP Sbjct: 198 AWSPDGTTIAYAGSPHAADSMATLGGVRSTLYLMDSDGGNRREIGTNIRNVSGLQ--WSP 255 Query: 357 QGDLIA----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 G + F F + + + K + Q L N Q P WSP G+ + +K Sbjct: 256 DGQWLVVLGYFDGFDNQVWLVNPTKAEWHQ--LTTTVGNYQWPAWSPDGKQIAVIWRKPA 313 Query: 413 DTGSKLYSIDLN 424 D G Y + L+ Sbjct: 314 DLGPSDYVMTLD 325 >gi|157273491|gb|ABV27390.1| prolyl oligopeptidase family protein [Candidatus Chloracidobacterium thermophilum] Length = 691 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 26/170 (15%) Query: 262 APRFSSNGKRALIS-----------VQKDEAM----DIYSVDLQSNATERLTNTLFINIS 306 AP FS +G+ +S +DEA+ DI+ V L +R++ + + Sbjct: 226 APPFSLSGRDYDVSPDGKELAFARNTDRDEAISTNNDIFIVPLGGGEPKRISTSPGSDTH 285 Query: 307 ASYSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 YSPD I +FESD K+Q+ + + +R+S + S+ + WSP Sbjct: 286 PRYSPDGKYIAWLSQERAMFESD---KKQVILYERATGKLRRLSDKVDISFDELAWSPDS 342 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 + T + + + G+ R+LVE + +P G++L F++ Sbjct: 343 QTLFLTGDHRGQVPVFTLTLAGNDVRMLVEQGQNGNLSVAPDGKTLYFTQ 392 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%) Query: 306 SASYSPDSSQIVFESDREGKE------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + + SPD + + K +L+VM + G ++ ++ DP WSP Sbjct: 50 AVAVSPDGKYLAYTQGVPDKAANRIQYELWVMPTGGGPAHQLVSGPYSAT-DPCWSPDSQ 108 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 IAF K I + ++G + R + + +N+ W+ GR LIF Sbjct: 109 TIAFVSNRDGKAQIWTVHRNGGEPRKVTDFFTNVSGILWTADGRHLIF 156 >gi|68349585|gb|AAY96688.1| protein kinase/protein beta WD-40 repeat [uncultured bacterium BAC10-4] Length = 903 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 14/188 (7%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINIS-ASYSPD 312 +F SM P + +G+ + S + +++S + +A +RL T I +SPD Sbjct: 663 DFPSM---PIWRPDGREIVFSRRTAVEAELWSQPVDGHAQPQRLWKTPASYIGPGGFSPD 719 Query: 313 SSQIVFESD----REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++ + EG +L + ++ + +R A+ + P SP G +A+T Sbjct: 720 GRTLILMATDLRTAEGHLRLLDLTAHNAPVERPWFPTPATEWTPNLSPDGRWLAYTSMES 779 Query: 369 EKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + V + G++ ++ V P WSP GR L F + T +K+ ++D+ Sbjct: 780 GRSEVYVRRFPDGGAKSKVSVAGGGF--PQWSPDGRELFFPAQPTTAT-TKMMAVDVRTT 836 Query: 427 NETLINTP 434 ++ TP Sbjct: 837 PSLVLGTP 844 >gi|220931667|ref|YP_002508575.1| WD40 domain protein beta Propeller [Halothermothrix orenii H 168] gi|219992977|gb|ACL69580.1| WD40 domain protein beta Propeller [Halothermothrix orenii H 168] Length = 918 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F S+ ++P +G +A++SV + D+Y + + L + I + +SPD Sbjct: 444 SFSSLDISP----DGNKAVLSVMYNSKKDLYLYSFEDKVLKPLIDDNHIEVFPVWSPDGK 499 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +VF SDR G+ LY + + RI+ Sbjct: 500 YVVFSSDRNGRFNLYALDMVTKNLYRITN 528 Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 14/109 (12%) Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGEKFAIGV 375 FE R+ E +++ G + I++ E YF +P SP G +A+ + + AI + Sbjct: 277 FEQKRKAIELNERIETEG--RTEITRLTEHGYFTLNPSVSPDGKKVAYYHYYNKFSAIRI 334 Query: 376 MKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + +DG +L+ D N+ TWSP G+ L+++++ D K+Y+ Sbjct: 335 LTEDGRDYQLVPAISSSDGNI---TWSPDGKKLVYAKQ---DVYKKVYN 377 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 23/223 (10%) Query: 217 PRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P SP+ +KVAY Y ++ +R+ D R + I + I +S +GK+ L+ Sbjct: 311 PSVSPDGKKVAYYHYYNKFSAIRILTEDGRDYQLVPAISSSDGNI---TWSPDGKK-LVY 366 Query: 276 VQKD------EAMDIYSVDLQSNATERLTNTLFINISASYSP---DSSQIVFESDREGKE 326 ++D D+Y D ++ RLT +Y+P D++ I++ + +G Sbjct: 367 AKQDVYKKVYNYYDLYMYDFTTDREIRLTRG-----ERAYAPVFKDNNTIIYLTQDKGIT 421 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + I + + F + SP G+ + K + + + + Sbjct: 422 SIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDKVLKP 481 Query: 386 LVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 L++D++++ P WSP G+ ++FS ++G LY++D+ +N Sbjct: 482 LIDDNHIEVFPVWSPDGKYVVFSSDRNGRF--NLYALDMVTKN 522 >gi|167622976|ref|YP_001673270.1| winged helix family two component response transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352998|gb|ABZ75611.1| putative two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 716 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 17/238 (7%) Query: 202 NIRYLTPSRDQILFE------PRFSPNQQKVAYATYDDEDILRVYLMDTR-IDRAPKRIG 254 +IRY+ ++ + E P SP+ + + Y + +YL D + PKR+ Sbjct: 170 SIRYVPTTKQNLTTEAGSELYPAVSPDGRWLVYGSRGSNKYASLYLKDLQNPAETPKRLT 229 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIY--SVDLQSNATERLTNTLFINISASYSPD 312 + ++ L +S +G + Y ++L SN +L + + +PD Sbjct: 230 STKTAELRAVWSPDGSALYYGSEHRSEDKCYLTKLNLDSNEALKLGECYTYSSAIDIAPD 289 Query: 313 SSQIVFESD-REG-KEQLYVMQSN--GSDQKRISQDKEASYFDP--VWSPQGDLIAFTKF 366 +S++V+ D EG LY + G KR+S + SY D +SP G +A + Sbjct: 290 ASRLVYIWDGAEGFGSGLYELSLTIEGEKPKRLSCTENCSYRDRDIAFSPNGSWLAVARR 349 Query: 367 SGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 G ++ +QE RL +++ +W LIFS + G + ID Sbjct: 350 FGNISEDIFIRHTETQEEQRLTFGLEDIRGLSWHQDSERLIFSTENSGVRNGYIVGID 407 >gi|237751978|ref|ZP_04582458.1| translocation protein TolB [Helicobacter winghamensis ATCC BAA-430] gi|229376545|gb|EEO26636.1| translocation protein TolB [Helicobacter winghamensis ATCC BAA-430] Length = 418 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/217 (20%), Positives = 97/217 (44%), Gaps = 7/217 (3%) Query: 128 FRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 L+DV + K++ + ++ +AH ++ DI I D+ R++ ++ Sbjct: 104 LHLYDVNSGLVALSKEYKNMQQETYPFLAHKMAIDINAYIKAPSVDWMERMVILAYYTKP 163 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G S +M + S +F + Q Y Y D+ L + + T Sbjct: 164 G---ESDIIMSDYTLTYKKKVISGGLNIFPKWANAAQNAFYYTKYLDKPTLFKFDLGTGQ 220 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + K++ + M++A S++ + L+++ +E DI+ D+ + A +RLT I++S Sbjct: 221 N---KKMFDSSGMLVASDVSNDENKILVTMAPNEQPDIFMYDITNGALKRLTKYSGIDVS 277 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 ++ + +++F SDR G ++ + ++G + Q Sbjct: 278 GNFIDNEERVMFISDRLGYPNVFAIPASGEVSGNVEQ 314 >gi|317033773|ref|XP_001395414.2| hypothetical protein ANI_1_1672104 [Aspergillus niger CBS 513.88] Length = 688 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 13/143 (9%) Query: 280 EAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIV------FESDREGKEQLYVM 331 +A+D Y + SN+TE L S++PD +++V F S ++Y Sbjct: 443 DALDSYDIYNISNSTEVEWLEEGNSGAFQPSWNPDGTELVSGFGAWFVSRTTNTAKIYHA 502 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVE 388 +NG+ ++ + S F P WSP G I + K+S + ++ + L Sbjct: 503 FANGTWHTNLTDGSDNSGF-PSWSPDGSAIVYRKWSLATEAPLGLHILNFTTGKTHQLT- 560 Query: 389 DSNLQAPTWSPSGRSLIFSRKKD 411 D P WSP G ++F+R + Sbjct: 561 DGWDNTPGWSPDGERIVFTRNNN 583 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 43/253 (16%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL-FEPRFSPNQQ 224 I G+KG I +++ SG L + + DG N L ++ + P +S + + Sbjct: 62 IEGKKG-----IFYMNRIGPSG---GQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGE 113 Query: 225 KVAYATY----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR-ALISVQKD 279 + + + D+ RV + + ++ +L+P NGK A +S Q + Sbjct: 114 WIVFTSERRGPGQSDLYRVRVDGSGLETLAATDSVEDIGVLSP----NGKTLAYVSTQGN 169 Query: 280 EAMDIYSVDLQSNATERLTNTL---------FINISASYSPDSSQIVFESDRE------- 323 +I+ DL S + LT+T + S+SPD IVF SDR Sbjct: 170 YTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHS 229 Query: 324 ---GKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 G E +Y ++ +GSD + + + + S P +SP G I + + E G Sbjct: 230 DGTGWEHTQTLGVYAVRPDGSDFRTVIRQEGYSLGTPQFSPDGKRIIYNNMTTED-TYGC 288 Query: 376 MKKDGSQERLLVE 388 QE + + Sbjct: 289 HGVSAQQEAVTAQ 301 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 17/138 (12%) Query: 291 SNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEA 347 +NAT+ L N + + ++S D IVF S+R G Q LY ++ +GS + ++ Sbjct: 89 TNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGPGQSDLYRVRVDGSGLETLAATDSV 148 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSNLQA----------P 395 V SP G +A+ G + + KD Q + L + ++ +A P Sbjct: 149 EDIG-VLSPNGKTLAYVSTQG-NYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRP 206 Query: 396 TWSPSGRSLIFSRKKDGD 413 +WSP G ++FS ++ D Sbjct: 207 SWSPDGEWIVFSSDRNTD 224 >gi|298242217|ref|ZP_06966024.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297555271|gb|EFH89135.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 702 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 13/112 (11%) Query: 265 FSSNGKRALISVQ-KDEAM-----DIYSVDLQS-----NATERLTNTLFINISASYSPDS 313 S +G+ + S+ KD+A DIY + L N RLT N +SPDS Sbjct: 27 LSPDGRSVVFSLALKDKASNEVLSDIYLLRLDEHGQALNEPVRLTRGGKQNNFPVWSPDS 86 Query: 314 SQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++F S+REG K QL++++ G + ++++ + WSP G IA T Sbjct: 87 QRLLFTSNREGDKAQLWLLEMGGGEARKLTNFARG-INEVAWSPDGKWIALT 137 >gi|242041123|ref|XP_002467956.1| hypothetical protein SORBIDRAFT_01g037140 [Sorghum bicolor] gi|241921810|gb|EER94954.1| hypothetical protein SORBIDRAFT_01g037140 [Sorghum bicolor] Length = 724 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 46/228 (20%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-- 274 P FS + K+A+ D + V+L D+ R S I +P + N K+ ++ Sbjct: 391 PTFSKDGSKLAFV---DNEFKAVWLADSHGLRVVFETDGPDS-IFSPVW--NQKKDILYV 444 Query: 275 ----SVQKDEAMDIYSV-DLQSNA-----TERLTNTLFINISASYSPDSSQIVFESDREG 324 S + +E ++IY++ D+ A T +LT F N +PD ++ VF S R+G Sbjct: 445 CMGPSFKANETLEIYAIPDVSRGARARRHTRQLTKGKFNNAFPFTNPDGTKFVFRSTRDG 504 Query: 325 KEQ----LYVMQSNGSDQ---KRISQDKEASYFDPV--WSPQGDLIAFTK---------- 365 ++ LY+M+ + ++++ E S+ D WSP G+L+ F Sbjct: 505 GDKNYKNLYIMEDAEFGEVGGGKVTRLTEGSWIDTHCQWSPDGNLVVFASNRDKPADAPE 564 Query: 366 ----FSGEKFAIGVMK-KDGSQERLLVEDSNLQA----PTWSPSGRSL 404 FA+ +M D S R++ +L P +SP GRS+ Sbjct: 565 RDHGLDPGYFAVYLMNVSDRSVVRVIRSGYDLSGHVNHPVFSPDGRSI 612 >gi|114048456|ref|YP_739006.1| transcriptional regulator domain-containing protein [Shewanella sp. MR-7] gi|113889898|gb|ABI43949.1| transcriptional regulator domain protein [Shewanella sp. MR-7] Length = 716 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 10/183 (5%) Query: 265 FSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 FS +G+ I+ + + + DI+ DL S + +RLT+ L S++PD+ +VF ++ Sbjct: 337 FSPDGRWLAIARRFSNISEDIFIRDLASASEKRLTHGLEDIRGLSWTPDAQSLVFATEDS 396 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDG 380 G +++ + + S D E + S +G+L+ +F F++G G Sbjct: 397 GSRNGFIIDIETTHIR--SLDVEGMSYPSSVSEEGELVYHQYRRQFQMAYFSLG-ESVPG 453 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASD 439 S LL + + P +SP + ++F + G +++++ D+NG+ E + + + Sbjct: 454 SLFPLLYSSISHRNPDYSPEAKRIVFVSSETG--YNEIWTSDINGKKLEQHTHLKSRVAY 511 Query: 440 PQW 442 P+W Sbjct: 512 PRW 514 >gi|265767748|ref|ZP_06095280.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263252420|gb|EEZ23948.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1095 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 336 DVYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 QDKEA----------SYFDPVWSPQGDLIAF 363 E + F+P +SP G IAF Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEIAF 426 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + ++T + + +SPDS QI F SDR G ++++ +G + +R++ Sbjct: 45 DIFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRMGSMDVFIVSKDGGEPRRLT 104 >gi|134080129|emb|CAK46110.1| unnamed protein product [Aspergillus niger] Length = 719 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 13/143 (9%) Query: 280 EAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIV------FESDREGKEQLYVM 331 +A+D Y + SN+TE L S++PD +++V F S ++Y Sbjct: 468 DALDSYDIYNISNSTEVEWLEEGNSGAFQPSWNPDGTELVSGFGAWFVSRTTNTAKIYHA 527 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVE 388 +NG+ ++ + S F P WSP G I + K+S + ++ + L + Sbjct: 528 FANGTWHTNLTDGSDNSGF-PSWSPDGSAIVYRKWSLATEAPLGLHILNFTTGKTHQLTD 586 Query: 389 DSNLQAPTWSPSGRSLIFSRKKD 411 + P WSP G ++F+R + Sbjct: 587 GWD-NTPGWSPDGERIVFTRNNN 608 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 26/149 (17%) Query: 265 FSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTL---------FINISASYSPDSS 314 S NGK A +S Q + +I+ DL S + LT+T + S+SPD Sbjct: 179 LSPNGKTLAYVSTQGNYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGE 238 Query: 315 QIVFESDRE----------GKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 IVF SDR G E +Y ++ +GSD + + + + S P +SP G Sbjct: 239 WIVFSSDRNTDWTGHSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQEGYSLGTPQFSPDGK 298 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 I + + E G QE + + Sbjct: 299 RIIYNNMTTED-TYGCHGVSAQQEAVTAQ 326 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 17/138 (12%) Query: 291 SNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEA 347 +NAT+ L N + + ++S D IVF S+R G Q LY ++ +GS + ++ Sbjct: 114 TNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGPGQSDLYRVRVDGSGLETLAATDSV 173 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSNLQA----------P 395 V SP G +A+ G + + KD Q + L + ++ +A P Sbjct: 174 EDIG-VLSPNGKTLAYVSTQG-NYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRP 231 Query: 396 TWSPSGRSLIFSRKKDGD 413 +WSP G ++FS ++ D Sbjct: 232 SWSPDGEWIVFSSDRNTD 249 >gi|108757114|ref|YP_634720.1| S9C family peptidase [Myxococcus xanthus DK 1622] gi|108460994|gb|ABF86179.1| peptidase, S9C (acylaminoacyl-peptidase) subfamily [Myxococcus xanthus DK 1622] Length = 730 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 308 SYSPDSSQIVFESDREGKEQ-------LYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGD 359 +++PD+ IVF + G+ + L+V +G + R +++ A+ PV+SP G Sbjct: 278 TFTPDNKSIVFAARDVGRSEAWSTDLDLFVAPIDGKAKPRKLTEKNRATDTSPVFSPDGK 337 Query: 360 LIAF-----TKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDG 412 +A+ F +++ + + G QER+L + D ++ + WS G++L S G Sbjct: 338 TLAYLAMSRPGFEADRYRVILRTWPGGQERVLTQDWDRSVGSLAWSADGKTLFASAGHVG 397 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 ++++D+ T + A PQ Sbjct: 398 Q--QPIFALDVATGKPTQLTKDGAADAPQ 424 >gi|255930285|ref|XP_002556702.1| Pc06g00930 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581315|emb|CAP79086.1| Pc06g00930 [Penicillium chrysogenum Wisconsin 54-1255] Length = 673 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 33/201 (16%) Query: 265 FSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 FS +G+ + ++ D DIY V + E L T + SP+ QI + S Sbjct: 89 FSPDGEWITFTGERNGDGNSDIYRVRTDGSDLEELVATSSLEDGVVMSPNGRQIAYVSTA 148 Query: 323 EG-KEQLYVMQSNGSDQKRISQDKEA--------SYFDPVWSPQGDLIAFTK-------- 365 G K ++VM + ++ YF P WSP G IAF+ Sbjct: 149 NGFKANIWVMDLESGKKWNLTDTATTAADDSLPNGYFRPSWSPDGQWIAFSSDRNSGWYG 208 Query: 366 -----FSG-------EKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKD 411 F G ++ +I ++ +GS R +V L +P WS G ++F Sbjct: 209 HGDPIFQGVTGWEHTQELSIYAIRPNGSDFRSVVSKPGYCLGSPKWSLDGERIVFYEMTR 268 Query: 412 GDTGSKLYSIDLNGRNETLIN 432 +T + ++ N TL++ Sbjct: 269 ENTWNAHRPESIDSANSTLVS 289 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 38/216 (17%) Query: 263 PRFSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 PR + + K+ + + + ++Y ++ L + A++SPD I F Sbjct: 41 PRKAPSDKKGIFYMNRIAPGTSELYVANVDGTDERPLLSNPIYEYHATFSPDGEWITFTG 100 Query: 321 DR--EGKEQLYVMQSNGSDQKRISQDKEASYFDP-VWSPQGDLIAF-TKFSGEKFAIGVM 376 +R +G +Y ++++GSD + + +S D V SP G IA+ + +G K I VM Sbjct: 101 ERNGDGNSDIYRVRTDGSDLEELV--ATSSLEDGVVMSPNGRQIAYVSTANGFKANIWVM 158 Query: 377 KKDGSQERLLVEDSNLQA----------PTWSPSGRSLIFSRKKD------------GDT 414 + ++ L + + A P+WSP G+ + FS ++ G T Sbjct: 159 DLESGKKWNLTDTATTAADDSLPNGYFRPSWSPDGQWIAFSSDRNSGWYGHGDPIFQGVT 218 Query: 415 GSK------LYSIDLNGRN-ETLINTPAYA-SDPQW 442 G + +Y+I NG + ++++ P Y P+W Sbjct: 219 GWEHTQELSIYAIRPNGSDFRSVVSKPGYCLGSPKW 254 >gi|119509317|ref|ZP_01628467.1| WD-40 repeat protein [Nodularia spumigena CCY9414] gi|119466159|gb|EAW47046.1| WD-40 repeat protein [Nodularia spumigena CCY9414] Length = 1544 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 38/249 (15%) Query: 167 TGEKGDFNSRILFVSES--VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 TGE FNS + F +S + +G + + RDG + L ++ +L E FSPN Q Sbjct: 976 TGE--GFNS-VAFSPDSTLIATGSWDKTAKIWSRDGKLLHTLDKHKEAVL-EVAFSPNSQ 1031 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +A A++D + ++++ D ++ + + + + FS +GK + +V D M + Sbjct: 1032 LLATASWD--NTVKLWSRDGKLLHT---LDKHKDKVNSVTFSPDGK-LIATVGWDNTMKL 1085 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-SDR-------EGKE-QLYVMQSNG 335 +++D + T T + S S+SPD QI DR EGKE + + NG Sbjct: 1086 WNLDGKELRT--FTGHKDMIWSVSFSPDGKQIATAGGDRTVKIWNLEGKELRTLIGHQNG 1143 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + ++SP G LIA SG+K K E L + + Sbjct: 1144 VN-------------SVIFSPDGKLIATA--SGDKTVKLWNSKGKELETLYGHTDAVNSV 1188 Query: 396 TWSPSGRSL 404 +SP G S+ Sbjct: 1189 AFSPDGTSI 1197 >gi|301164717|emb|CBW24276.1| putative exported peptidase [Bacteroides fragilis 638R] Length = 1095 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 336 DVYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 QDKEA----------SYFDPVWSPQGDLIAF 363 E + F+P +SP G IAF Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEIAF 426 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + ++T + + +SPDS QI F SDR G ++++ +G + +R++ Sbjct: 45 DIFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRMGSMDVFIVSKDGGEPRRLT 104 >gi|300785363|ref|YP_003765654.1| beta-lactamase/prolyl oligopeptidase [Amycolatopsis mediterranei U32] gi|299794877|gb|ADJ45252.1| beta-lactamase/prolyl oligopeptidase [Amycolatopsis mediterranei U32] Length = 1107 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 54/227 (23%) Query: 263 PRFSSNGKR---ALISVQKDEAMD---IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P S +G+R L + +D D ++ V RLT ++ ++SPD +++ Sbjct: 19 PAVSPDGRRIAYVLRTADRDRDEDTRSLWVVPADGGEARRLTRGP-ADLEPAWSPDGTRL 77 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------------ 364 F ++G QL+++ + G + ++++ + PVW P G IAF Sbjct: 78 AFLRAQDGPAQLWLLPTGGGEPEQVTTLPLGA-GTPVWRPDGAEIAFAAPVDLAADEGDD 136 Query: 365 ---------------KFSGEKFAIGVMK-----------KDGSQERLLVEDSNLQAPTWS 398 + + G+++ G ++ D + P WS Sbjct: 137 DAARTRRASAPVVADRLDFKADGAGLLRTLRKHVHVLDVATGEVRQVTSGDWHAGDPAWS 196 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 P G L F + DT DL R+ + P AS+P+ +G Sbjct: 197 PDGARLAFPAGPEADT-------DLTFRSGAYVVEPGDRASEPRLIG 236 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 60/278 (21%), Positives = 104/278 (37%), Gaps = 69/278 (24%) Query: 216 EPRFSPNQQKVAYA--TYD---DEDILRVYLMDT------RIDRAPKRIGNFRSMILAPR 264 P SP+ +++AY T D DED ++++ R+ R P L P Sbjct: 18 HPAVSPDGRRIAYVLRTADRDRDEDTRSLWVVPADGGEARRLTRGPAD--------LEPA 69 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF------ 318 +S +G R +D ++ + E++T + + PD ++I F Sbjct: 70 WSPDGTRLAFLRAQDGPAQLWLLPTGGGEPEQVTTLPLGAGTPVWRPDGAEIAFAAPVDL 129 Query: 319 --------------------------ESDREG-----KEQLYVMQ-SNGSDQKRISQDKE 346 ++D G ++ ++V+ + G ++ S D Sbjct: 130 AADEGDDDAARTRRASAPVVADRLDFKADGAGLLRTLRKHVHVLDVATGEVRQVTSGDWH 189 Query: 347 ASYFDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKD-GSQERLLVEDSNL-QAPTW 397 A DP WSP G +AF T + A V D S+ RL+ + + A TW Sbjct: 190 AG--DPAWSPDGARLAFPAGPEADTDLTFRSGAYVVEPGDRASEPRLIGSGAGMCGAVTW 247 Query: 398 SPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTP 434 + G +L+ ++D G L I L+G T + P Sbjct: 248 TTDGAALLAVGRRDTAPGHLGLLRIPLDGGETTDLAAP 285 >gi|320162104|ref|YP_004175329.1| putative S9 family peptidase [Anaerolinea thermophila UNI-1] gi|319995958|dbj|BAJ64729.1| putative S9 family peptidase [Anaerolinea thermophila UNI-1] Length = 668 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 32/212 (15%) Query: 256 FRSMILA-PRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISAS 308 +R +LA P+ S +G+ + SVQ+ E + ++ V + + + T ++ Sbjct: 12 YRFQVLADPQISPDGEHVVFSVQRVERKNEKKFSNLWVVPTRGGSAFQFTVGDHTDVHPV 71 Query: 309 YSPDSSQIVFESDREGKEQ---LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT- 364 +SPD ++I F S+R KE+ L+++ G + + + Q E + +WSP G + T Sbjct: 72 WSPDGNKIAFLSNRLDKEKPPALFIIPFGGGEARPLGQ-IEGEIGEILWSPDGRKLLLTV 130 Query: 365 ----------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 + E+ ++G ++ ERL + L + P R ++ D T Sbjct: 131 RKTDEEVLQRRKDPERKSLGTPQR--HVERLFYK---LDGYGYLPKERWHLWV--MDAGT 183 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 G + D +E +P ++ D QW+ F+ Sbjct: 184 GRAMQLTDHPVWDE---RSPEWSPDGQWIAFI 212 >gi|60683198|ref|YP_213342.1| putative exported peptidase [Bacteroides fragilis NCTC 9343] gi|60494632|emb|CAH09433.1| putative exported peptidase [Bacteroides fragilis NCTC 9343] Length = 1095 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 336 DVYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 QDKEA----------SYFDPVWSPQGDLIAF 363 E + F+P +SP G IAF Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEIAF 426 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + ++T + + +SPDS QI F SDR G ++++ +G + +R++ Sbjct: 45 DIFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRMGSMDVFIVSKDGGEPRRLT 104 >gi|53715261|ref|YP_101253.1| putative Tricorn-like protease [Bacteroides fragilis YCH46] gi|52218126|dbj|BAD50719.1| putative Tricorn-like protease [Bacteroides fragilis YCH46] Length = 1095 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 336 DVYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 QDKEA----------SYFDPVWSPQGDLIAF 363 E + F+P +SP G IAF Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEIAF 426 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + ++T + + +SPDS QI F SDR G ++++ +G + +R++ Sbjct: 45 DIFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRMGSMDVFIVSKDGGEPRRLT 104 >gi|325297708|ref|YP_004257625.1| prolyl oligopeptidase family protein [Bacteroides salanitronis DSM 18170] gi|324317261|gb|ADY35152.1| prolyl oligopeptidase family protein [Bacteroides salanitronis DSM 18170] Length = 702 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 10/144 (6%) Query: 308 SYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S SPD QI + D +Y M ++GS+ + ++ E P W G I Sbjct: 58 SVSPDGKQIAYTVSYYSVKDNASHTVIYTMNADGSNNRMLTATPENES-SPAWIKGGTKI 116 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF-SRKKDGDTGSKLY 419 AF G + + M DG+ + L E +++ +SP ++F ++ K G S LY Sbjct: 117 AFLTPQGGSYQLWEMNPDGTGRKQLSEYKGDIEGFKFSPDETKVLFIAQVKYGKRTSDLY 176 Query: 420 SIDLNGRNETLINTPAYASDPQWV 443 DL+ + +IN Y +WV Sbjct: 177 P-DLDKASGRVINDLMYKHWDEWV 199 >gi|322436470|ref|YP_004218682.1| peptidase S41 [Acidobacterium sp. MP5ACTX9] gi|321164197|gb|ADW69902.1| peptidase S41 [Acidobacterium sp. MP5ACTX9] Length = 1087 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 52/253 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR------FSS 267 L +P SP+ ++A+ + D I P G ++ P +S Sbjct: 25 LSDPTISPDGHEIAFVSGGD------------IWSVPAAGGEAHLLVTHPATESRPLYSP 72 Query: 268 NGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DRE 323 +GK+ A IS + +IY + L S +RLT + + ++S D I F S D Sbjct: 73 DGKKLAFISTRTGNG-NIYILTLASGQLQRLTYSDVPDRLDAWSKDGQWIYFTSAIDDVA 131 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF---------------TKFSG 368 G+ ++ +++ G ++ ++ + F+ SP G IAF Sbjct: 132 GQGDIFRVRTTGGTPLEVTHERYMNEFESSPSPDGSQIAFMAKGISASQWWRNGHAHIDE 191 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + ++LL DS P WS G+SL + G E Sbjct: 192 TELWLKPVGDSAPYKKLLPADSKHAWPMWSADGKSLFYMSDASG--------------AE 237 Query: 429 TLINTPAYASDPQ 441 + TPA ++ P+ Sbjct: 238 NIWETPAGSASPK 250 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 17/163 (10%) Query: 214 LFEPRFSPNQQKVAYAT--YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + +P++SP+ VAY D L ++ DT R P I S AP +S NGK Sbjct: 355 MSDPQWSPDSTSVAYIAERMDGSHQLELFSFDTLKAR-PLTIIPGESQ--APSWSPNGK- 410 Query: 272 ALISVQKDEAMDIYSV-DLQSNATER-------LTNTLFINISASYSPDSSQIVFES-DR 322 L V ++ + + ++ D ++ A +T+ S ++SPD+ + F S D Sbjct: 411 LLAYVHDNKDLHVITMPDPKAKAPSTVPLPDKIITSGALAQPSLAWSPDNQWVAFTSVDA 470 Query: 323 EGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAF 363 L V+Q+ G + I+ + E +Y WSP G I F Sbjct: 471 RSFRNLNVIQAAGGEPHPITFLGNGETAYSRIAWSPDGKYILF 513 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFDPVW 354 R+T T F ++ SPD ++V + QL+ + +G D +R+ + + S DP W Sbjct: 308 RVTETSFRTLA--LSPDGKKVVVLA----HGQLFAASAKDGGDGQRV-KSEAVSMSDPQW 360 Query: 355 SPQGDLIAF--TKFSG----EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 SP +A+ + G E F+ +K L + QAP+WSP+G+ L + Sbjct: 361 SPDSTSVAYIAERMDGSHQLELFSFDTLKA----RPLTIIPGESQAPSWSPNGKLLAY 414 >gi|58700238|ref|ZP_00374720.1| tolB protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58533246|gb|EAL57763.1| tolB protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 65 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +I S+DL S T+++T I+ S S+SPD + F SD G +QLYV+ Sbjct: 6 NILSLDLSSKRTKKITKGSAISTSPSFSPDQKYMAFSSDISGSQQLYVI 54 >gi|119470702|ref|ZP_01613370.1| putative peptidase [Alteromonadales bacterium TW-7] gi|119446172|gb|EAW27450.1| putative peptidase [Alteromonadales bacterium TW-7] Length = 674 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 74/265 (27%) Query: 234 EDILRVYLMDTRID-RAPKRIGNFRS----------------MILAPRFSSNGKRALISV 276 +D VY + R+D + +++GN S M +P S +G+R Sbjct: 44 DDGKTVYFVRNRMDIKTDRKVGNIWSVDYKTKQMQPLTSGVHMDYSPVLSPDGQRLAFIS 103 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE----------------- 319 +D + IY L++ A +++N + S+SPDSSQ+VF Sbjct: 104 TRDGSSQIYMKWLKTGAIAKISNLTSSPRAISWSPDSSQLVFSMFVPSKNTPPVNLPGKP 163 Query: 320 -----------------------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 ++G QL+ + +NG + K+++ D+ + D +S Sbjct: 164 KGATWAEPAKFIDDVYYRADGGGYSQKGFNQLFTLDANGGNAKQLTSDEFDNAGDVSFSK 223 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQ-----------ERLLVEDSNLQAPTWSPSGRSLI 405 G L+ +S + G +K S+ E + + Q P SP GR L Sbjct: 224 DGSLL---YYSANRHKNGELKPTNSEVYKLNLNTLAIEAVTNRNGPDQQPKVSPDGRYLA 280 Query: 406 FSRKKDGDT---GSKLYSIDLNGRN 427 ++ D T ++LY DL N Sbjct: 281 YTGYDDKRTNYENTQLYIRDLKTGN 305 >gi|254294875|ref|YP_003060898.1| amidohydrolase [Hirschia baltica ATCC 49814] gi|254043406|gb|ACT60201.1| amidohydrolase [Hirschia baltica ATCC 49814] Length = 1103 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 9/140 (6%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY + + + + + S +S D + + SD G + ++ G +K+IS Sbjct: 55 DIYIMSAEGGEAKAILSGPATQKSPQFSSDGKTLAYISDASGHDNIWTASVKGKKRKQIS 114 Query: 343 QDKEASYFDPVWSPQGDLI--AFTKFSGEKFAIGVMKK---DGSQERLLVEDS----NLQ 393 ++ P WSP + I + K +++ DGS+ + +V+ ++Q Sbjct: 115 FEERDIISSPAWSPSDEAIIAVVREPEASKVYSSTIREYYVDGSEPKHMVDAPGGRRDVQ 174 Query: 394 APTWSPSGRSLIFSRKKDGD 413 P +SP G L ++++ GD Sbjct: 175 EPRYSPDGEYLYYTQRVGGD 194 >gi|229496034|ref|ZP_04389758.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317126|gb|EEN83035.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 840 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 7/100 (7%) Query: 316 IVFESDREGKEQLY--VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +++ S RE K + + +M ++G + I + KE Y + W PQ D + F + G K + Sbjct: 223 VIYYSQRERKTEYFGRLMHADG---RLIRESKELVYAN--WLPQSDQLHFVRTEGSKRLL 277 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 V +G+ E++L+ D +SP +++ +++ GD Sbjct: 278 VVQSPEGASEKILLRDLPQGEYRFSPDAKTIYLAKEIKGD 317 >gi|213420647|ref|ZP_03353713.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 162 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 20 LHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSP 148 + + + W++LG ++ G V V ++L D ++ + + Sbjct: 80 QPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN 138 Query: 149 ASW-RKIAHTISDDIYQSITGEKG 171 W R HT SD++++ +TG KG Sbjct: 139 KQWLRYAGHTASDEVFEKLTGIKG 162 >gi|298675393|ref|YP_003727143.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288381|gb|ADI74347.1| peptidase S9B dipeptidylpeptidase IV domain protein [Methanohalobium evestigatum Z-7303] Length = 597 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 36/155 (23%) Query: 301 LFINIS---------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 LF+NI+ A++SP +++ + + + LY + ++G+++ +I+ D Y Sbjct: 344 LFLNITKERHIPDQGATWSPTGNKVSYIENGD----LYTINTDGTNRSKITSD-VGQY-- 396 Query: 352 PVWSPQGDLIAFTKFSG-EKFAIGVMKKDGS---------QERLLVEDSNLQAPTWSPSG 401 W+P GD IA+ +G +K I V +G+ E+ L++D WSP G Sbjct: 397 -KWNPSGDYIAYITVNGSDKRPILVATPEGNKKTRISPGRHEKFLLKDGG-----WSPDG 450 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETL-INTPA 435 L+F D G LY G + + I TP Sbjct: 451 SRLLFGSI---DYGRGLYVAKFEGYKKVMSIYTPT 482 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---R 340 IY V++ +++ + + S SPD +I+F + K LY+ S+G +++ Sbjct: 290 IYMVNINGTGNRKISEKCYKDDVFSLSPDEEKILFTTFHRSK--LYISDSDGGNKRLFLN 347 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 I++++ WSP G+ +++ + +G+ + I DG+ + D + W+PS Sbjct: 348 ITKERHIPDQGATWSPTGNKVSYIE-NGDLYTINT---DGTNRSKITSD--VGQYKWNPS 401 Query: 401 GRSLIF 406 G + + Sbjct: 402 GDYIAY 407 >gi|114799589|ref|YP_759593.1| S9A/B/C family peptidase [Hyphomonas neptunium ATCC 15444] gi|114739763|gb|ABI77888.1| peptidase, S9A/B/C family [Hyphomonas neptunium ATCC 15444] Length = 696 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Query: 263 PRFSSNGK------RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +GK R++ + + ++S+D + L + +SPD S++ Sbjct: 48 PQVSPDGKTIAYVRRSMDRMTDRDVGQLWSIDTGTGNHRPLVAGAEGAANPRWSPDGSRL 107 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ S GK +L V + ++Q +A PVWSP G IAF+ F Sbjct: 108 IYMSAAGGKPELRVFYPDTGRSHALAQFLQAPS-QPVWSPDGKYIAFSMF 156 >gi|225619584|ref|YP_002720841.1| hypothetical protein BHWA1_00641 [Brachyspira hyodysenteriae WA1] gi|225214403|gb|ACN83137.1| hypothetical protein BHWA1_00641 [Brachyspira hyodysenteriae WA1] Length = 2326 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 28/184 (15%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE---GKEQLYVMQSNG---- 335 DI++VD + T RLT + I+ S S S IVF S R+ G LY + + G Sbjct: 72 DIFAVDSYTLETYRLTRSPAIDTSVSIDDKSRYIVFSSTRDDAFGDIYLYKLYNLGIRTS 131 Query: 336 -SDQKRISQ------DKEASYFDPVWSPQGDLIAFT--KFSGEK--FAIGVMKKDGSQER 384 ++ + + Q D + DPV S +G++IAF + G K FA+ KD + Sbjct: 132 KNNLENLEQSIVRLTDYKGYDTDPVVSHKGNIIAFVSDRDGGIKKLFAVKPNGKDVQK-- 189 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL--NGRNET----LINTPAYAS 438 + D +PT+S + F K GD S+L +DL N NET L +T + Sbjct: 190 --LSDIEASSPTFSFDDTKIAFITSKIGDKYSQLAILDLTHNTNNETNLTILTDTETFKF 247 Query: 439 DPQW 442 +P + Sbjct: 248 NPTF 251 >gi|332662875|ref|YP_004445663.1| WD40-like beta Propeller containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331689|gb|AEE48790.1| WD40-like beta Propeller containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 1088 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D++ D R+T+T + +SPD I F SDR G +YV+ +G R++ Sbjct: 53 DLWITDRTGGEARRITSTPAVESDPHFSPDGRWIAFTSDRTGSNSVYVVSIDGGTPTRLT 112 Query: 343 QDKEASY 349 A++ Sbjct: 113 WHPSAAF 119 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 17/169 (10%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL---RVYLMDTRIDRAPKRIGNFR 257 +N+++L+ ++ ++FE + A DI +TR + KR+ N Sbjct: 260 SNVKWLSGNKGTLIFERDGYLHTIDAASGNAKQLDITVRGDFPWAETRWENVNKRVSNAA 319 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQI 316 S GKR + + + I++V + + T LT + + +SPD +++ Sbjct: 320 -------LSPTGKRVAMEARGE----IFTVPVANGDTRNLTRSAGVADRVPIWSPDGNRV 368 Query: 317 VFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + SD EG L Q S + IS + ++P WSP G IAF Sbjct: 369 AWFSDASGEGYALLIAAQDGLSAPRSISIGESKMAWEPTWSPDGKRIAF 417 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLL 386 L++ G + +RI+ A DP +SP G IAFT ++ V+ D G+ RL Sbjct: 54 LWITDRTGGEARRITS-TPAVESDPHFSPDGRWIAFTSDRTGSNSVYVVSIDGGTPTRLT 112 Query: 387 VEDSNLQAPTWSPSGRSLIF--SRKKDGDTGSKLYSIDLNGRNETLINTP-----AYASD 439 S A W+ G+ +++ SR+ ++L+++ G TL+ P A+A D Sbjct: 113 WHPSAAFARGWTNDGKRVLYASSRETAPSNYNRLWTVSTQGGPSTLLPAPWGFDGAFAPD 172 >gi|256421777|ref|YP_003122430.1| peptidase S41 [Chitinophaga pinensis DSM 2588] gi|256036685|gb|ACU60229.1| peptidase S41 [Chitinophaga pinensis DSM 2588] Length = 1076 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 31/143 (21%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG------------KEQLYV 330 +++ ++ N T+R+TNT S ++SPD ++V+ ++R G +E + Sbjct: 337 EVFVTSVEGNMTKRITNTPQQERSVAWSPDGKKLVYAAERNGNWDVYQTTIVRAEEPYFF 396 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + ++ I+ D E F PV+SP G IAF + ++ + V + R L+ Sbjct: 397 AATLLKEEPLIATDAEE--FQPVFSPDGKEIAFVE---DRNVLRVYNIASKKSRTLL--- 448 Query: 391 NLQAPTWSPSGRSLIFSRKKDGD 413 P+GR+ +S DGD Sbjct: 449 --------PAGRNFSYS---DGD 460 >gi|116622459|ref|YP_824615.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225621|gb|ABJ84330.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 874 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 17/176 (9%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN--------- 334 I+ DL AT RLT N + +SPDSS+++F + R G + Y ++ Sbjct: 619 IWLTDLSRGATSRLTLDPGFNAAPVWSPDSSRLIFRTMRNGAIEFYQKSASLGGNEEAVL 678 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAI----GVMKKDGSQERLLVE 388 +D R+ S WS G + + SG + + + + R + Sbjct: 679 TTDTVRMVNGSSVSAMLTDWSSDGRFLIYDTPGLSGSQLWVVENPTLAPGNAKPVRFMSS 738 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + L +SP GR + ++ + G ++ L+ R + Y +P+W G Sbjct: 739 ANALMHANFSPDGRLVAYTSNESGTYQVYCQTLPLSNRKWLVSTNGGY--EPRWRG 792 >gi|268679161|ref|YP_003303592.1| TolB domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617192|gb|ACZ11557.1| TolB domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 422 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+++ +QQ Y T + +Y D R A K I + MI+ S +G + L+++ Sbjct: 196 PKWANDQQNAFYYTSYNGAEPTIYHYDLRTG-ARKSIISSNGMIVCSDVSKDGSKLLLTM 254 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + DIY D++S ++T I+++ ++ + +I F SDR G ++ Sbjct: 255 APKDQPDIYLYDVKSRKITKITEYAGIDVNGNFIDNDRRIAFVSDRLGNPDIF 307 >gi|270296907|ref|ZP_06203106.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272894|gb|EFA18757.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 707 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 13/163 (7%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI----SASYS 310 N M A +S G Q+D A I D++ +R+T + S + S Sbjct: 5 NLLLMSAAMTLASCGGTKDAGQQQDAATLIQRSDIKIEG-KRMTPEALWAMGRIGSVAVS 63 Query: 311 PDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 PD QI + + +++VM ++GSD +I+ D P W G +AF Sbjct: 64 PDEKQIAYTVSYYSVPQNKSNSEVFVMNADGSDNTQITHDAWQE-GQPTWFKDGKKLAFL 122 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + M DGS + L + + +++ ++SP G+ L+F Sbjct: 123 CNESGSSQVWEMNPDGSGRKQLTQYEGDIEGFSFSPDGKKLLF 165 >gi|116625897|ref|YP_828053.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229059|gb|ABJ87768.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 912 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 12/106 (11%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDLIAF 363 + SPD + F S+R G+ QL++ Q G + +++ E AS+F P G I + Sbjct: 357 TISPDGKFVAFISERSGRRQLWLQQVGGGEPIQLTHSNETVSSASFF-----PDGTRIVY 411 Query: 364 TKFSGEK---FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + S ++ I V+ G Q R L+ ++ SP G+ +++ Sbjct: 412 STASSDRRRTSTIEVIPTLGGQSRSLLNGTDFGGVALSPDGQRIVY 457 >gi|255011806|ref|ZP_05283932.1| putative exported peptidase [Bacteroides fragilis 3_1_12] gi|313149645|ref|ZP_07811838.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138412|gb|EFR55772.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1093 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 336 DVYVTSVEYKTTKQITNTPCQERGIDFAPDGRSLVYASERGGLWQLYTSSIVRKDEKQFT 395 Query: 343 QDKEA----------SYFDPVWSPQGDLIAF 363 E + F+P +SP G +AF Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEVAF 426 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V + ++T + + +SPDS QI F SDR G ++++ G + +R++ Sbjct: 45 DIFTVPVSGGKATQITTNPAFDTTPVWSPDSKQIAFASDRMGSLDVFIVSKEGGEPRRLT 104 >gi|160890339|ref|ZP_02071342.1| hypothetical protein BACUNI_02780 [Bacteroides uniformis ATCC 8492] gi|156860071|gb|EDO53502.1| hypothetical protein BACUNI_02780 [Bacteroides uniformis ATCC 8492] Length = 707 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 13/163 (7%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI----SASYS 310 N M A +S G Q+D A I D++ +R+T + S + S Sbjct: 5 NLLLMSAAMTLASCGGTKDAGQQQDAATLIQRSDIKIEG-KRMTPEALWAMGRIGSVAVS 63 Query: 311 PDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 PD QI + + +++VM ++GSD +I+ D P W G +AF Sbjct: 64 PDEKQIAYTVSYYSVPQNKSNSEVFVMNADGSDNTQITHDAWQE-GQPTWFKDGKKLAFL 122 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + M DGS + L + + +++ ++SP G+ L+F Sbjct: 123 CNESGSSQVWEMNPDGSGRKQLTQYEGDIEGFSFSPDGKKLLF 165 >gi|32564215|ref|NP_496867.2| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] gi|25809200|emb|CAB05698.2| C. elegans protein C31C9.1a, confirmed by transcript evidence [Caenorhabditis elegans] gi|25809223|emb|CAB02296.2| C. elegans protein C31C9.1a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 473 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ VD N +RLT++ + SPD ++I F S R G +LY+M +G + +I+ Sbjct: 197 DIFKVDRYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQIT 256 Query: 343 QD---KEASYFDP 352 + S+F P Sbjct: 257 NELGYDGGSFFTP 269 >gi|332533051|ref|ZP_08408921.1| putative peptidase [Pseudoalteromonas haloplanktis ANT/505] gi|332037530|gb|EGI73983.1| putative peptidase [Pseudoalteromonas haloplanktis ANT/505] Length = 672 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +I+SVD ++ + LT+ + ++ S SPD ++ F S R+G Q+Y+ +IS Sbjct: 64 NIWSVDYKTKQMQPLTSGVHMDYSPVLSPDGQRLAFISTRDGSSQIYIKWLKTGAMAKIS 123 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 + +S WSP + + F+ F S + + K + TW+ Sbjct: 124 -NLTSSPRSITWSPDSNQLIFSMFVPSANSAPVSLPGKP-------------KGATWAEP 169 Query: 401 GRSL--IFSRKKDGDTG----SKLYSIDLNGRN 427 + + ++ R G S+L+SID NG N Sbjct: 170 AKFIDDVYYRSDGGGYTQKGFSQLFSIDANGGN 202 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 43/229 (18%) Query: 234 EDILRVYLMDTRID-RAPKRIGNFRS----------------MILAPRFSSNGKRALISV 276 ED VY + R+D + +++GN S M +P S +G+R Sbjct: 42 EDGKTVYFVRNRMDIKTDRKVGNIWSVDYKTKQMQPLTSGVHMDYSPVLSPDGQRLAFIS 101 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +D + IY L++ A +++N S ++SPDS+Q++F ++V +N + Sbjct: 102 TRDGSSQIYIKWLKTGAMAKISNLTSSPRSITWSPDSNQLIFS--------MFVPSANSA 153 Query: 337 DQKRISQDKEASYFDPV-------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + K A++ +P + G FS + F+I +G + L D Sbjct: 154 PVSLPGKPKGATWAEPAKFIDDVYYRSDGGGYTQKGFS-QLFSI---DANGGNAKQLTHD 209 Query: 390 S--NLQAPTWSPSGRSLIFSRKKDGD-----TGSKLYSIDLNGRNETLI 431 N ++S G+SL FS + + T +++Y +DL + T I Sbjct: 210 EFDNAGDVSFSNDGKSLYFSTNRHKNNQLKFTNNEIYKLDLASQTITEI 258 >gi|284040573|ref|YP_003390503.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] gi|283819866|gb|ADB41704.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] Length = 735 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 20/148 (13%) Query: 308 SYSPDSSQIVF-----------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 S SPD + V+ + + E K +Y+ D K +++ E++ VWSP Sbjct: 39 SLSPDGQRAVYALATIEPNPDNKEEYEYKTHVYLTGLKPGDSKALTRGPESAR-QAVWSP 97 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTG 415 G IAF + K I +M DG + L + P WSP G + F+ G T Sbjct: 98 DGQRIAFVRTVKGKGQIFIMPLDGGEAWQLTNTTYGASTPLWSPDGTRISFT---SGITM 154 Query: 416 SKLYSIDL--NGRNETL--INTPAYASD 439 +++ + L G+N L + P +A++ Sbjct: 155 AQMLTDSLVNPGKNTPLWSLEKPGFANN 182 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 12/111 (10%) Query: 265 FSSNGKRALISVQKDEA-----------MDIYSVDLQSNATERLTNTLFINISASYSPDS 313 S +G+RA+ ++ E +Y L+ ++ LT A +SPD Sbjct: 40 LSPDGQRAVYALATIEPNPDNKEEYEYKTHVYLTGLKPGDSKALTRGPESARQAVWSPDG 99 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +I F +GK Q+++M +G + +++ + P+WSP G I+FT Sbjct: 100 QRIAFVRTVKGKGQIFIMPLDGGEAWQLTNTTYGAS-TPLWSPDGTRISFT 149 >gi|91216538|ref|ZP_01253504.1| Acylaminoacyl-peptidase [Psychroflexus torquis ATCC 700755] gi|91185332|gb|EAS71709.1| Acylaminoacyl-peptidase [Psychroflexus torquis ATCC 700755] Length = 705 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-------GKEQLYV 330 +D I+ + + +LT+ S+S++PD I++ ++ EQ++ Sbjct: 218 QDGYSHIFVISAEGGTARQLTSGSHQFGSSSWTPDGKHILYTVNKSEDAEVDPNNEQIFE 277 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----KFSGEKFA-IGVMKKDGSQERL 385 K+++ + ++ P SP G IA+T KF G + + +M +DG++ + Sbjct: 278 QHIETGVSKQLTSTR-GPFYSPKVSPDGKHIAYTGFDDKFVGYQLTKLYLMSRDGAELEI 336 Query: 386 LVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 L + ++ + TW+ +S+ F ++G+ SK+ I+L G T+ Sbjct: 337 LSKGFAQDISSITWAKDAKSIYFRFDEEGN--SKVGQINLKGEVSTV 381 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 21/158 (13%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S G + + +D + +Y ++S T LTN + S+SPD +Q++F Sbjct: 120 WSPQGDKFAFTSNQDGSNQLYVYWVESKTTAALTNFTESPSNISWSPDGTQLLFSK---- 175 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI--AFTKFSGEKFA------IGVM 376 +V +S+ + Q +I + W + D+I A + G + I V+ Sbjct: 176 ----FVPESSKAIQPKIPSPPNGA----EWEKEADVIDKAVYRRDGGGYVQDGYSHIFVI 227 Query: 377 KKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGD 413 +G R L S+ + +W+P G+ ++++ K D Sbjct: 228 SAEGGTARQLTSGSHQFGSSSWTPDGKHILYTVNKSED 265 >gi|32564217|ref|NP_871957.1| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] gi|25809201|emb|CAD57688.1| C. elegans protein C31C9.1b, confirmed by transcript evidence [Caenorhabditis elegans] gi|25809224|emb|CAD57698.1| C. elegans protein C31C9.1b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 455 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ VD N +RLT++ + SPD ++I F S R G +LY+M +G + +I+ Sbjct: 197 DIFKVDRYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQIT 256 Query: 343 QD---KEASYFDP 352 + S+F P Sbjct: 257 NELGYDGGSFFTP 269 >gi|289642645|ref|ZP_06474786.1| serine/threonine protein kinase [Frankia symbiont of Datisca glomerata] gi|289507554|gb|EFD28512.1| serine/threonine protein kinase [Frankia symbiont of Datisca glomerata] Length = 740 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 R+ + DT+ P +G R +L S+ +L+++ D + + A E + Sbjct: 476 RLTVDDTKPAALPVIVGPQRKTVLYTVIDSS--PSLVAIAADGSGAPMPLFTSGPAAELV 533 Query: 298 TNTLFINISASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + + AS P +V + R +G LYV +GS +R+ + A DP W Sbjct: 534 ---IAPDARASVDPTGRFVVIRAVRGPNDGLTGLYVAAVDGSSVRRL--NVPAGATDPSW 588 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--------PTWSPSGRSLIF 406 SP GD I F SG + D + L PTWSP G+ + F Sbjct: 589 SPTGDRIVFFVGSGGVDGGALFTIDADPAAAGAKPVQLTPGTEGFDADPTWSPDGKKVAF 648 Query: 407 SRKKD 411 R D Sbjct: 649 RRAFD 653 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 20/148 (13%) Query: 312 DSSQIVFESDREGKEQLYVMQSN-----GSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 D +V+ S++EG+ +Y ++ G Q+ D + + + PQ + +T Sbjct: 444 DDDTLVYSSEQEGRRAIYSLRVGPDGRPGQPQRLTVDDTKPAALPVIVGPQRKTVLYTVI 503 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQA---------PTWSPSGRSLIFSRKK---DGDT 414 + + DGS + + S A + P+GR ++ + DG T Sbjct: 504 DSSPSLVAI-AADGSGAPMPLFTSGPAAELVIAPDARASVDPTGRFVVIRAVRGPNDGLT 562 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQW 442 G LY ++G + +N PA A+DP W Sbjct: 563 G--LYVAAVDGSSVRRLNVPAGATDPSW 588 >gi|218921792|emb|CAW30777.1| P52CeGA [Caenorhabditis elegans] Length = 460 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ VD N +RLT++ + SPD ++I F S R G +LY+M +G + +I+ Sbjct: 184 DIFKVDRYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQIT 243 Query: 343 QD---KEASYFDP 352 + S+F P Sbjct: 244 NELGYDGGSFFTP 256 >gi|116626667|ref|YP_828823.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229829|gb|ABJ88538.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 849 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 355 SPQGDLIAFTK--FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP+GD IAF + G+ ++ V+ G ++ L + ++LQ WSP G + F+ K+G Sbjct: 473 SPKGDRIAFADHYYYGDDGSVAVVNLQGEKKTLSSKFNSLQGIAWSPDGDEVWFTGAKNG 532 Query: 413 DTGSKLYSIDLNGRNETLINTPA 435 +Y++ L G+ + P Sbjct: 533 GQ-RAVYAVTLGGKERLIFRAPG 554 >gi|166363202|ref|YP_001655475.1| hypothetical protein MAE_04610 [Microcystis aeruginosa NIES-843] gi|166085575|dbj|BAG00283.1| hypothetical protein MAE_04610 [Microcystis aeruginosa NIES-843] Length = 170 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 14/114 (12%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-----QDKEASYFDPVWSPQGDLIA 362 SYS D + F SDR G+ +Y+ +KR+ ++S P + G LIA Sbjct: 51 SYSADGRYLAFASDRSGRRSIYLFD---LQEKRLVNLPNLNRGDSSQDQPSLNADGRLIA 107 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDG 412 + S E+ VM D SQ R + +NL+ PT S GR + F +DG Sbjct: 108 Y--ISSERGKSDVMVYDRSQSRATLLTANLRGSVRNPTISGDGRQIAFETNQDG 159 >gi|160882655|ref|ZP_02063658.1| hypothetical protein BACOVA_00608 [Bacteroides ovatus ATCC 8483] gi|156111970|gb|EDO13715.1| hypothetical protein BACOVA_00608 [Bacteroides ovatus ATCC 8483] Length = 1094 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y + T+++TNT + S++PD +V+ S+R+G QLY ++K Sbjct: 335 DVYVTSIDYKTTKQITNTPDQERNISFAPDGRTLVYSSERDGLWQLYTSTIVRKEEKQFT 394 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ K AS F P +SP G +AF Sbjct: 395 YATELKEERLTNSKVAS-FQPQFSPDGKEVAF 425 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++T + +SPDS QI F SDR G ++V+ S G +R++ Sbjct: 45 DIYTVPSTGGRATQITTNPAFDTEPVWSPDSKQIAFASDRMGSLDVFVVSSEGGTPQRLT 104 >gi|20090401|ref|NP_616476.1| hypothetical protein MA1543 [Methanosarcina acetivorans C2A] gi|19915411|gb|AAM04956.1| predicted protein [Methanosarcina acetivorans C2A] Length = 576 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 33/148 (22%) Query: 308 SYSPDSSQIVFESDREGKEQL--YVMQSNGSDQKRISQDKEASYFD------------PV 353 S SPD +I+ S L Y+ ++GS+ K S++D Sbjct: 255 SLSPDRKKILLVSGLPDSFDLHTYISDTDGSNLK-----GNVSFYDGDNPEDTNILTKEY 309 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 W P G L+ + + +++ + + +RLL E N P W P G+ ++F K+ Sbjct: 310 WQPNGSLL----LVNQNRNLYIVEGNENNKRLLYE-GNASEPQWFPDGKKILFVENKN-- 362 Query: 414 TGSKLYSIDLNGRNETLIN----TPAYA 437 KLYSID++G N + I TP+++ Sbjct: 363 ---KLYSIDIDGTNLSFITNFGPTPSHS 387 >gi|260173877|ref|ZP_05760289.1| putative exported peptidase [Bacteroides sp. D2] gi|315922140|ref|ZP_07918380.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696015|gb|EFS32850.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1094 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y + T+++TNT + S++PD +V+ S+R+G QLY ++K Sbjct: 335 DVYVTSIDYKTTKQITNTPDQERNISFAPDGRTLVYSSERDGLWQLYTSTIVRKEEKQFT 394 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ K AS F P +SP G +AF Sbjct: 395 YATELKEERLTNSKVAS-FQPQFSPDGKEVAF 425 Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++T + +SPDS QI F SDR G ++V+ S G +R++ Sbjct: 45 DIYTVPSTGGRATQITTNPAFDTEPVWSPDSKQIAFASDRMGSLDVFVVSSEGGAPQRLT 104 >gi|218782212|ref|YP_002433530.1| Periplasmic component of the Tol biopolymer transport system-like protein [Desulfatibacillum alkenivorans AK-01] gi|218763596|gb|ACL06062.1| Periplasmic component of the Tol biopolymer transport system-like protein [Desulfatibacillum alkenivorans AK-01] Length = 610 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 53/277 (19%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFS-PNQQKVAY----ATYDDEDILRVYLMD---- 243 +CV++ DG LT D+ F PN KV + A+ + +I V + Sbjct: 90 ICVINADGTGFTRLT-DNDRCDSHASFVWPNNAKVVFQRNVASSGNGEIWIVNVDGSNPT 148 Query: 244 --TRIDRAPKRIGNFRSMILAPRFSSNGK----RALISVQKDEA----MDIYSVDLQSNA 293 T+ P +G + P S +G R + A MDI +++ A Sbjct: 149 SLTQAHNGP--MGGASAGENNPMVSPDGTKVAFRGCVPASDGYAHLFVMDIDGANVKDVA 206 Query: 294 TERLTNTLFINISA-SYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQK-RISQDKEA-- 347 N I+IS +SPDS + F++ E G +++ ++++G+ ++S +A Sbjct: 207 A---YNDRIIDISHHCWSPDSKWVCFKACDESVGDARIFKVKADGTAAPVKLSPADDAMP 263 Query: 348 -SYFD------PVWSPQGDLIAFTKFSGEKF---AIGVMKKDGSQERLLVE--------- 388 ++ D P WSP G I+ + ++GE + I +M DG + ++ Sbjct: 264 AAWNDWFCQNWPRWSPDGKWISTSLYTGENYNDKKIVIMDSDGQNMKTIMAQDGDDDGDN 323 Query: 389 -DSNLQAPTWSPSGRSLIFSRK--KDGDTGSKLYSID 422 D Q+ TWSP + L++S +GDT + ++D Sbjct: 324 YDWIHQSGTWSPDSKWLVYSMNTVAEGDTALCISNVD 360 >gi|322370480|ref|ZP_08045038.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] gi|320549897|gb|EFW91553.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] Length = 595 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRI 341 ++S+D RLT S SP S++VF D E QLY + + + Sbjct: 40 VWSLDEPGAFPSRLTAHDERVSFVSASPTRSEVVFGMDTGSDEHDQLYRYDLDSGTETAL 99 Query: 342 SQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTW 397 + EA + WSP GD IAFT + G F + V +D ++ L+ E L W Sbjct: 100 TATPEAIHLWGAWSPDGDRIAFTANRREGSTFDVYVQGRDDAEATLVHEGPGGFLSVEAW 159 Query: 398 SPSG 401 G Sbjct: 160 GEPG 163 >gi|237718429|ref|ZP_04548910.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452362|gb|EEO58153.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 1094 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y + T+++TNT + S++PD +V+ S+R+G QLY ++K Sbjct: 335 DVYVTSIDYKTTKQITNTPDQERNISFAPDGRTLVYSSERDGLWQLYTSTIVRKEEKQFT 394 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ K AS F P +SP G +AF Sbjct: 395 YATELKEERLTNSKVAS-FQPQFSPDGKEVAF 425 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++T + +SPDS QI F SDR G ++V+ S G +R++ Sbjct: 45 DIYTVPSTGGRATQITTNPAFDTEPVWSPDSRQIAFASDRMGSLDVFVVSSEGGAPQRLT 104 >gi|269925369|ref|YP_003321992.1| peptidase S9 prolyl oligopeptidase active site domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789029|gb|ACZ41170.1| peptidase S9 prolyl oligopeptidase active site domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 631 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRI 341 IY D+ + +++ T+ + +SPDS+++ F SDRE + + L+ + +G + ++ Sbjct: 48 IYVADITTGESKQFTSGPGADACPRWSPDSNKLAFISDREEEARFDLFTIDVHGGEAIKL 107 Query: 342 SQDKEASYFDPVWSPQGDLIAF 363 + D E S D WSP G I Sbjct: 108 A-DLEGSVLDLRWSPDGRYIGL 128 >gi|254505723|ref|ZP_05117869.1| peptidase, S41 family [Vibrio parahaemolyticus 16] gi|219551376|gb|EED28355.1| peptidase, S41 family [Vibrio parahaemolyticus 16] Length = 1080 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 27/146 (18%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT--KF 366 SPD +I F Q++++ +NG + ++ Y D PVWSP G IAF +F Sbjct: 42 SPDGEKIAFTY----AGQIWLISANGGEATPLTGSD--VYSDHPVWSPDGQSIAFQSKRF 95 Query: 367 -SGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGS-------- 416 SG+ F + V G Q + L S+ P +S G ++FS ++ GD+ + Sbjct: 96 GSGDVFIVPVT---GGQAKRLTYHSSADVPYEFSSDGSEVLFSSRRLGDSDATLNNGFMG 152 Query: 417 ----KLYSIDL-NGRNETLINTPAYA 437 +LYS+ GR + L++ P A Sbjct: 153 NSSKRLYSVSSEGGREKLLLSNPVSA 178 >gi|114569665|ref|YP_756345.1| peptidase S9 prolyl oligopeptidase [Maricaulis maris MCS10] gi|114340127|gb|ABI65407.1| peptidase S9, prolyl oligopeptidase active site domain protein [Maricaulis maris MCS10] Length = 701 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%) Query: 306 SASYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + S SPD ++ + +SD+ + +++++++GS + +S D AS P WSP G Sbjct: 54 APSISPDGERVAYVRRTNDVKSDQT-RSSIWLVRADGSHHEPLSADGAAS-GSPRWSPDG 111 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +A+T ++ +DGS + WSP G L +S K Sbjct: 112 QTLAYTYAGEAGVSLRTRSRDGSDSLVTELPGAPGGLAWSPDGNRLAWSMFK 163 >gi|299149075|ref|ZP_07042137.1| MdsD protein [Bacteroides sp. 3_1_23] gi|298513836|gb|EFI37723.1| MdsD protein [Bacteroides sp. 3_1_23] Length = 1094 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y + T+++TNT + S++PD +V+ S+R+G QLY ++K Sbjct: 335 DVYVTSIDYKTTKQITNTPDQERNISFAPDGRTLVYSSERDGLWQLYTSTIVRKEEKQFT 394 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ K AS F P +SP G +AF Sbjct: 395 YATELKEERLTNSKVAS-FQPQFSPDGKEVAF 425 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++T + +SPDS QI F SDR G ++V+ S G +R++ Sbjct: 45 DIYTVPSTGGRATQITTNPAFDTEPVWSPDSKQIAFASDRMGSLDVFVVSSEGGAPQRLT 104 >gi|293371423|ref|ZP_06617854.1| WD40-like protein [Bacteroides ovatus SD CMC 3f] gi|292633620|gb|EFF52178.1| WD40-like protein [Bacteroides ovatus SD CMC 3f] Length = 1094 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 D+Y + T+++TNT + S++PD +V+ S+R+G QLY ++K Sbjct: 335 DVYVTSIDYKTTKQITNTPDQERNISFAPDGRTLVYSSERDGLWQLYTSTIVRKEEKQFT 394 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAF 363 R++ K AS F P +SP G +AF Sbjct: 395 YATELKEERLTNSKVAS-FQPQFSPDGKEVAF 425 Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++T + +SPDS QI F SDR G ++V+ S G +R++ Sbjct: 45 DIYTVPSTGGRATQITTNPAFDTEPVWSPDSRQIAFASDRMGSLDVFVVSSEGGAPQRLT 104 >gi|163788202|ref|ZP_02182648.1| putative Tricorn-like protease [Flavobacteriales bacterium ALC-1] gi|159876522|gb|EDP70580.1| putative Tricorn-like protease [Flavobacteriales bacterium ALC-1] Length = 1076 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 15/106 (14%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR+ ++P NG++ + DIY V + RLT + +S D S+ Sbjct: 29 FRNTAISP----NGQQIAFTYN----ADIYLVSVNGGKATRLTTHSDYDTKPVWSHDGSK 80 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRI---SQDKEASYF----DPVW 354 I F S+R G ++V+ SNG + KR+ S D A+ F D +W Sbjct: 81 IAFSSNRHGNFDVFVIASNGGNIKRLTFHSADDWATDFSQKDDEIW 126 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 26/206 (12%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 G R M +P NGK LI + + D+++ + + T RLTNT S S D Sbjct: 314 GGVREMKPSP----NGKE-LIFIYRG---DVFATSVDGSLTRRLTNTPEQERSIDISADG 365 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQ----------DKEASYFDPVWSPQGDLIAF 363 IV+ +R LY + D+K + + +A F P +SP GD +A+ Sbjct: 366 RTIVYAGERNNSWNLYTQTLSNKDEKYFTNALELKEAILLENKAETFQPKFSPSGDDVAY 425 Query: 364 TKFSGEKFAIGVMKKD----GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + I + K + E+ Q WSP G+ + D ++ Sbjct: 426 LEDRTKLKTINLKSKKITSIHNGEKHFSYADGDQDFEWSPDGKWFAITFYPDRYWVGEIG 485 Query: 420 SIDLNGRNETLINTPAYA-SD--PQW 442 + NG ++ LIN SD PQW Sbjct: 486 IVSANG-DQKLINVSKSGFSDFYPQW 510 Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 14/138 (10%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SP+ QI F + + +Y++ NG R++ + PVWS G IAF+ Sbjct: 35 SPNGQQIAFTYNAD----IYLVSVNGGKATRLTTHSDYDT-KPVWSHDGSKIAFSSNRHG 89 Query: 370 KFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-------KLYSI 421 F + V+ +G +RL ++ A +S + F+ + + S +LYS+ Sbjct: 90 NFDVFVIASNGGNIKRLTFHSADDWATDFSQKDDEIWFNSIRLDNQKSMLFHQLGELYSV 149 Query: 422 DLNGR-NETLINTPAYAS 438 LN + L++ PAY + Sbjct: 150 SLNAELPKQLLSMPAYEA 167 >gi|94967825|ref|YP_589873.1| lysine decarboxylase transcriptional regulator, CadC [Candidatus Koribacter versatilis Ellin345] gi|94549875|gb|ABF39799.1| lysine decarboxylase transcriptional regulator, CadC [Candidatus Koribacter versatilis Ellin345] Length = 724 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIGVMKKDGSQERL 385 L+ + +G+D +++++ + F P WSP G IAF +G+ + V+ G +L Sbjct: 498 LWRSRVDGTDAQKLTEAPMRA-FVPKWSPDGQSIAFRANFAAGKPWQTYVISSKGGVAQL 556 Query: 386 LV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + E SN+ P W+ G LI + D L DL+ + I + SDP Sbjct: 557 VASELSNVGGPGWTADGHGLILVGEHD----ESLRIFDLHSGSSKFIPNSQHMSDP 608 >gi|51893240|ref|YP_075931.1| acylamino-acid-releasing enzyme [Symbiobacterium thermophilum IAM 14863] gi|51856929|dbj|BAD41087.1| acylamino-acid-releasing enzyme [Symbiobacterium thermophilum IAM 14863] Length = 610 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 25/249 (10%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDDED 235 +LFVS+ +SG + +L + G R LT + + E F+ + ++A+ A + ++ Sbjct: 30 VLFVSD--ISG--QFNLWRVASQGGWPRQLTLFTEDSVREAIFNKDGSRIAFLADHHGDE 85 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALIS--VQKDEAMDIYSVDLQSN 292 +VYLMD + P+RI + + + FS G+ + + +DIY DL++ Sbjct: 86 QFQVYLMDA-VGGWPERITDRPDVQYSLGGFSPCGRYLAFAGNAANPQDVDIYIYDLETK 144 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR---ISQDKEASY 349 T +LT + + S+SPD S+I+ Q ++ + + R + +E + Sbjct: 145 ETRQLTPGGGLRYAFSFSPDGSRILAVQFYGNTNQDLLLVDVATGEIRNLTAHEGREVKF 204 Query: 350 FDPVWSPQGDLIAFTKFSGEKF-AIG-----------VMKKDGSQERL-LVEDSNLQAPT 396 F W G F G +F AIG V+ D E + L D L A Sbjct: 205 FPGPWLKDGSGFYFATNDGREFQAIGFYSLAEDRWSYVLTADWDIEGVALSADQRLMAYV 264 Query: 397 WSPSGRSLI 405 + +GRS++ Sbjct: 265 VNEAGRSVV 273 >gi|312881019|ref|ZP_07740819.1| hypothetical protein Apau_2301 [Aminomonas paucivorans DSM 12260] gi|310784310|gb|EFQ24708.1| hypothetical protein Apau_2301 [Aminomonas paucivorans DSM 12260] Length = 319 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 11/120 (9%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 SP+ +++ F SD G + V+ + + + SY P WSP G L+ F + Sbjct: 75 SPEGTRVAFTRSDSRGGRTVAVLDLENRSLRVLPLPGDNSY-GPRWSPDGKLLVFNHWDR 133 Query: 367 SGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + +GV DG+ L + +P W P G SL + LY DL+G Sbjct: 134 KASNWTLGVAAPDGTGLHLFPSLPGGVYSPAWDPRGESLYAQDLR------TLYRFDLSG 187 >gi|114775409|ref|ZP_01450977.1| hypothetical protein SPV1_03753 [Mariprofundus ferrooxydans PV-1] gi|114553520|gb|EAU55901.1| hypothetical protein SPV1_03753 [Mariprofundus ferrooxydans PV-1] Length = 363 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 18/131 (13%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 + SPD S++VF L++M ++GSD +++ + PVWSP G IAFT Sbjct: 215 ALSPDGSRLVFTMQDGHFWHLFMMNTDGSDLVQLTSGEHVDA-QPVWSPDGSWIAFTSNR 273 Query: 367 ---------------SGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + I ++ +DGS RL ++ AP+++ +GR S +K Sbjct: 274 GDEDEDDKDGGHSSKQQRNWDIWLIGRDGSNLTRLTTNKASDGAPSFANNGRIYFHSDRK 333 Query: 411 DGDTGSKLYSI 421 SK + + Sbjct: 334 VSREESKSHQV 344 >gi|299139737|ref|ZP_07032910.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX8] gi|298598361|gb|EFI54526.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX8] Length = 743 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%) Query: 313 SSQIVFESDREGK--------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF- 363 SS + + R+GK QL+ ++G ++ ++ D F WSP G +A Sbjct: 487 SSAVRVDYTRDGKWVAWTDSAGQLWRANASGEEKLLLTPDT-FDVFLAHWSPDGSRLALM 545 Query: 364 TKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + G+ + I ++ +G+ LL E N P+WSP G+SL+F R D Sbjct: 546 AREPGKAWQIYLVGANGNDLAPLLQESRNAADPSWSPDGQSLVFGRIND 594 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 13/108 (12%) Query: 264 RFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--S 320 +S +G R AL++ + +A IY V N L S+SPD +VF + Sbjct: 534 HWSPDGSRLALMAREPGKAWQIYLVGANGNDLAPLLQESRNAADPSWSPDGQSLVFGRIN 593 Query: 321 DREGKE------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 D GKE ++ +++N +Q S F P WSP G IA Sbjct: 594 DAMGKENASRTLHIFHLKTNQMEQVPASD----GLFSPRWSPDGHYIA 637 >gi|332526849|ref|ZP_08402945.1| hypothetical protein RBXJA2T_13159 [Rubrivivax benzoatilyticus JA2] gi|332111294|gb|EGJ11278.1| hypothetical protein RBXJA2T_13159 [Rubrivivax benzoatilyticus JA2] Length = 662 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 383 ERLLVEDSNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 ERL E + +W P GR ++F+R + G+ ++LY +D R TL+ P DP Sbjct: 95 ERLTAEPDPVAEASWEPREGRYIVFARGRGGNEATQLYRLDPATRQATLLTDPDQRHDP- 153 Query: 442 WVGFM 446 +G++ Sbjct: 154 -IGWL 157 >gi|149277633|ref|ZP_01883774.1| putative Tricorn-like protease [Pedobacter sp. BAL39] gi|149231866|gb|EDM37244.1| putative Tricorn-like protease [Pedobacter sp. BAL39] Length = 1073 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 34/71 (47%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +G L + ++ DI+ L+ N T LTNT S S+SPD I F S R Sbjct: 447 PSFSPDGAYVLFTAYRNFEQDIFVHHLKQNKTINLTNTGVTETSPSWSPDGKYIFFTSLR 506 Query: 323 EGKEQLYVMQS 333 + MQ+ Sbjct: 507 TKPSYPFGMQN 517 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 8/169 (4%) Query: 206 LTPSRDQILFE--PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 +T ++++ F P +P+ Q V ++ + D+ +V A R+ + P Sbjct: 18 VTQAQNETYFTAYPALTPDAQTVVFSF--EGDLWKV----PATGGAATRLTAMPGEEINP 71 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK S + D+Y + + ++LT + ++S DS I F S R Sbjct: 72 RVSPDGKWLAFSSNQFGNYDVYVMPMAGGTVKQLTFNDTADEVDNWSWDSKTIYFSSGRY 131 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 Y + +NG KR+ + + + +P G+L + + FA Sbjct: 132 NMYTTYTVGANGGTAKRLFPNFFNTIHNVAEAPSGELFFNDTWESKNFA 180 >gi|37519745|ref|NP_923122.1| hypothetical protein glr0176 [Gloeobacter violaceus PCC 7421] gi|35210736|dbj|BAC88117.1| glr0176 [Gloeobacter violaceus PCC 7421] Length = 644 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ++ S SPD ++V+ + G+ QL+V +G Q + + WSP GD IA++ Sbjct: 57 VNPSLSPDGGELVYRTGVSGQPQLWVNGPDGPRQITFGESVNIA----AWSPAGDGIAYS 112 Query: 365 KFSG--EKFAIGVMKKDGSQERLLVEDSN 391 G E+ + DG +ER LV ++ Sbjct: 113 VDRGGDEREGYYFISPDGKRERELVAPAD 141 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 10/139 (7%) Query: 305 ISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + +S D SQ+ + + GK +YV+ + + Q R +A + W P G + Sbjct: 145 VWGGFSRDGSQVAYAATEPGKADFNVYVL-TVATGQTRRVLSGQAGIYPVAWRPDGKALV 203 Query: 363 FTKFSGEKFAIGVMKKD---GSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 ++ GE A ++ D G LL E S W+P G+ S +D D + Sbjct: 204 LSRVRGED-ANDLLYLDLTTGQASDLLAPPEASAYTQIAWTPDGKGFYLSTNQDRDFAAL 262 Query: 418 LYSIDLNGRNETLINTPAY 436 Y D R + TPA+ Sbjct: 263 AY-YDFAARKLRTVETPAH 280 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 351 DPVWSPQG-DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P SP G +L+ T SG+ + V DG ++ E N+ A WSP+G + +S Sbjct: 58 NPSLSPDGGELVYRTGVSGQP-QLWVNGPDGPRQITFGESVNIAA--WSPAGDGIAYSVD 114 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPA 435 + GD Y I +G+ E + PA Sbjct: 115 RGGDEREGYYFISPDGKRERELVAPA 140 >gi|294139644|ref|YP_003555622.1| hypothetical protein SVI_0873 [Shewanella violacea DSS12] gi|293326113|dbj|BAJ00844.1| hypothetical protein [Shewanella violacea DSS12] Length = 394 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 20/172 (11%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 Q E +IY +D +SN LTN + +++ +SPD ++ F + K+ LY+M + Sbjct: 96 QTSEVFNIYHLDPKSNRITPLTNNMSQDVNPQFSPDGHKLAFIRFIDKKKVLYIMDLESN 155 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 + + + ++ F W+ +++A G+ + +K DG ++ L++ Sbjct: 156 TELEVLRAEDI--FGYSWANTQEVLAIAIKQGDHSQLLSLKLDGLTKKPLLQTRR----- 208 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSI-DLNG-RNETLINTPAYASDPQWVGFM 446 S KD D S + ++ +LN R+++ I TP +++D + F+ Sbjct: 209 ----------SADKD-DISSTVNNLSNLNSYRDQSEIMTPVWSTDDSQIAFI 249 >gi|315126189|ref|YP_004068192.1| peptidase [Pseudoalteromonas sp. SM9913] gi|315014703|gb|ADT68041.1| peptidase [Pseudoalteromonas sp. SM9913] Length = 647 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I+ FS G + L+S + +Y VD+++ + RLTN Y P+ +++F Sbjct: 54 IMGSSFSPTGDKVLVSSDESGIYSLYEVDVKTGSKTRLTNFEDSTYPIRYFPNDERVLFT 113 Query: 320 SDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 D G E +YV + +GS + P + FTK G +F I + Sbjct: 114 KDSGGNERYHVYVREVDGSIKD----------LTPGEETRASFAGFTK-DGSQFFITSNQ 162 Query: 378 KDGSQERLLVEDS-------------NLQAPTWSPSGRSLIFSR---KKDGDT 414 +D L DS L SP GR + S+ KD DT Sbjct: 163 RDAKFMDLYRVDSKTYKVTPVYQNTQGLDVGAISPDGRYIALSKNNTNKDSDT 215 >gi|307607782|emb|CBI44153.1| acylaminoacyl-peptidase fragment [Bacillus amyloliquefaciens DSM 7] Length = 148 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 260 ILAPRFSSNGKRA-LISVQKDEAMDIYSVDLQSNATERLTNTLFI-----NISASYSPDS 313 + P+++ +G+RA + + ++ D YS + TE T+ + N S +SPD Sbjct: 16 VTDPQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPDG 75 Query: 314 SQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD--LIAFTKFSGEK 370 ++ F SDRE G QLY++ + G + + D DP+W+P G L++ + S E+ Sbjct: 76 RRLAFVSDREDGVPQLYIIDAAGG-EAERAADIPWGVADPIWAPDGRSVLVSVSLTSAER 134 >gi|297181014|gb|ADI17215.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0070_10I02] Length = 1070 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTP--SRDQILFEPRFSPNQQKVAYATYDD-EDILRVY 240 V + + +N L M D I LT +QI P+FSP+ + VA + + D E + +Y Sbjct: 399 VTNKVQQNQLARMTID-QQIETLTELDGHEQIA-TPQFSPDGRYVAVSKWQDGERDIWIY 456 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + R +G S P +S++G+ S + ++Y+++L+S ++TN Sbjct: 457 TAEGEPYRQIVSVG---SHDQDPTWSADGRWLYFSSDRTGIFNLYAIELESEKLFQITNV 513 Query: 301 LFINISASYSPDSSQIVFES 320 L + PD+ +I FES Sbjct: 514 LGGAFHPAPHPDAKRIAFES 533 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I P+FS +G+ +S +D DI+ + ++ + + ++S D + F Sbjct: 429 IATPQFSPDGRYVAVSKWQDGERDIWIYTAEGEPYRQIVSVGSHDQDPTWSADGRWLYFS 488 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMK 377 SDR G LY ++ +I+ + F P P IAF FS G + Sbjct: 489 SDRTGIFNLYAIELESEKLFQITNVLGGA-FHPAPHPDAKRIAFESFSHNGMDIVEASLG 547 Query: 378 KDGSQERLLVEDSN 391 +DG E LV ++ Sbjct: 548 RDGWSEVGLVPSAD 561 >gi|153006586|ref|YP_001380911.1| hypothetical protein Anae109_3748 [Anaeromyxobacter sp. Fw109-5] gi|152030159|gb|ABS27927.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5] Length = 1012 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 4/149 (2%) Query: 260 ILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 I P FS +G + A V D D+Y V ++ +RLTN ++ ++ D Sbjct: 442 IADPAFSPDGSQIAFAGVSTDGQSDVYVVSVKGGEAKRLTNDFYVEKDVAWGADGIYCSS 501 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++ G+ L+ + + + R++ P G ++ + +G+ + K Sbjct: 502 DATDHGRMNLFRLDPSSGARTRLTTGPSTDR-GPFPQEDGSVLFSSDVAGKPDLYRL--K 558 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 DGS +R+ + L +P SP GR + S Sbjct: 559 DGSIQRITDFTTGLTSPGPSPKGRGVFAS 587 >gi|317479118|ref|ZP_07938258.1| prolyl oligopeptidase [Bacteroides sp. 4_1_36] gi|316904690|gb|EFV26504.1| prolyl oligopeptidase [Bacteroides sp. 4_1_36] Length = 699 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 13/159 (8%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI----SASYSPDSS 314 M A +S G Q+D A I D++ +R+T + S + SPD Sbjct: 1 MSAAMTLASCGGTKDAGQQQDAATLIQRSDIKIEG-KRMTPEALWAMGRIGSVAVSPDEK 59 Query: 315 QIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 QI + + +++VM ++GSD +I+ D P W G +AF Sbjct: 60 QIAYTVSYYSVPQNKSNSEVFVMNADGSDNTQITHDAWQE-GQPTWFKDGKKLAFLCNES 118 Query: 369 EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + M DGS + L + + +++ ++SP G+ L+F Sbjct: 119 GSSQVWEMNPDGSGRKQLTQYEGDIEGFSFSPDGKKLLF 157 >gi|83815972|ref|YP_444562.1| hypothetical protein SRU_0417 [Salinibacter ruber DSM 13855] gi|83757366|gb|ABC45479.1| hypothetical protein SRU_0417 [Salinibacter ruber DSM 13855] Length = 982 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 10/126 (7%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKF 366 +YSPD+S+I + + + +++ E + PV W P G+ IAF++ Sbjct: 303 AYSPDTSRIAALTQHSPARPVRRLHVIDPSTGAVTRGAEGAIEPPVAWHPSGERIAFSRR 362 Query: 367 SGEKFAIGVMKKD-------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + A G + D G+ ER L APT+ P G L F + G L Sbjct: 363 T--RAAHGSLVDDVFVVDADGTDERRLTHGRRTSAPTFGPDGDRLAFVATEGGTANVHLR 420 Query: 420 SIDLNG 425 ++ G Sbjct: 421 ALKTGG 426 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQ 393 G+D++R++ + S P + P GD +AF G + + K G R+ + ++Q Sbjct: 381 GTDERRLTHGRRTS--APTFGPDGDRLAFVATEGGTANVHLRALKTGGTTRVTDYEGDVQ 438 Query: 394 --APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 A W P+ +L F+R + + LY +D T + PA Sbjct: 439 ITALRWHPTQDTLAFARVSEAERELVLYDLDTGA--STALTDPA 480 >gi|298528654|ref|ZP_07016058.1| peptidase S41 [Desulfonatronospira thiodismutans ASO3-1] gi|298512306|gb|EFI36208.1| peptidase S41 [Desulfonatronospira thiodismutans ASO3-1] Length = 1212 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 15/154 (9%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G R S D++ +Q RLT ++ +++SPD +VF S R Sbjct: 61 PSISPDGSRIAFS----SGGDLWLAGIQGGEARRLTRHRHDDLHSNWSPDGESLVFTSMR 116 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--------EKFAIG 374 +G L+ ++ +G+ ++++ + +P WS + SG E Sbjct: 117 DGYMNLWRIREDGTQVRQLTH-SDRFMRNPDWSMDEEGREVITLSGLLEADVYREHRPYR 175 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 + + G ERL + P SP G +F+R Sbjct: 176 LPPEGGQHERL--HQAFGSEPRLSPCGSKTVFTR 207 >gi|237709872|ref|ZP_04540353.1| prolyl oligopeptidase [Bacteroides sp. 9_1_42FAA] gi|237725458|ref|ZP_04555939.1| prolyl oligopeptidase [Bacteroides sp. D4] gi|265753524|ref|ZP_06088879.1| prolyl oligopeptidase [Bacteroides sp. 3_1_33FAA] gi|229436145|gb|EEO46222.1| prolyl oligopeptidase [Bacteroides dorei 5_1_36/D4] gi|229455965|gb|EEO61686.1| prolyl oligopeptidase [Bacteroides sp. 9_1_42FAA] gi|263235238|gb|EEZ20762.1| prolyl oligopeptidase [Bacteroides sp. 3_1_33FAA] Length = 706 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 10/146 (6%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S S SPD +I + S+ + +YVM ++G + ++Q + +P W G Sbjct: 58 SLSISPDGKKIAYTVAYYSVSENKSHHVIYVMNTDGKNNTLLTQ-TAWNESEPQWIKGGT 116 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF-SRKKDGDTGSK 417 IAF I M DG++ R++ + +++ ++SP G+ ++F S+ K G Sbjct: 117 KIAFLCNESGGSQIWEMNPDGTERRIISDFKGDIEGFSFSPDGKKILFISQIKYGQRTVD 176 Query: 418 LYSIDLNGRNETLINTPAYASDPQWV 443 LY DL + ++N Y +WV Sbjct: 177 LYP-DLPKASGIIVNDLMYKHWDEWV 201 >gi|281419894|ref|ZP_06250893.1| MdsD protein [Prevotella copri DSM 18205] gi|281406021|gb|EFB36701.1| MdsD protein [Prevotella copri DSM 18205] Length = 1077 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+YSV + +LT + +SPDS +I F+S+REG ++V+ + G R++ Sbjct: 45 DLYSVSVNGGEARQLTTHAAFDSHPVWSPDSKKIAFQSNREGSLDIFVIDAKGGAPTRLT 104 Query: 343 QD 344 + Sbjct: 105 TN 106 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 33/124 (26%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y ++ T+R+T+T S+SPD +V+ ++R G Q+Y Q +I Sbjct: 332 DVYVTSVEYTTTKRITDTPQQERDLSFSPDGRALVYAAERNGVWQIY--------QSKIK 383 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 +KE ++ D +E+L+ Q P +SP G+ Sbjct: 384 NEKEKNF-------------------------TYATDIEEEQLVKTGITSQYPQYSPDGK 418 Query: 403 SLIF 406 + F Sbjct: 419 EVAF 422 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 P SP G IAF + G+ +++ V +G + R L + + P WSP + + F + Sbjct: 29 PAISPDGTTIAFA-YKGDLYSVSV---NGGEARQLTTHAAFDSHPVWSPDSKKIAFQSNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 +G ++ ID G T + T + + P + F D Sbjct: 85 EGSL--DIFVIDAKGGAPTRLTTNSGSETP--IAFAD 117 >gi|327310653|ref|YP_004337550.1| tricorn protease [Thermoproteus uzoniensis 768-20] gi|326947132|gb|AEA12238.1| tricorn protease [Thermoproteus uzoniensis 768-20] Length = 1025 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 352 PVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 P +SP G IAFT+ G V+ DG Q + L + W+P GR L+ Sbjct: 44 PKFSPDGRYIAFTRLQQTDQGTLAEAYVVPADGGQPKRLTYFGSPYTRVAGWTPDGRVLV 103 Query: 406 FSR-KKDGDTGSKLYSIDLNGRNETLINTPAYA 437 FS K +LYS+ L+GR E L PA A Sbjct: 104 FSDFKMPFPQWRELYSVSLDGRYERLNLGPATA 136 >gi|294506310|ref|YP_003570368.1| hypothetical protein SRM_00495 [Salinibacter ruber M8] gi|294342638|emb|CBH23416.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 992 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 10/126 (7%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV-WSPQGDLIAFTKF 366 +YSPD+S+I + + + +++ E + PV W P G+ IAF++ Sbjct: 313 AYSPDTSRIAALTQHSPARPVRRLHVIDPSTGAVTRGAEGAIEPPVAWHPSGERIAFSRR 372 Query: 367 SGEKFAIGVMKKD-------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + A G + D G+ ER L APT+ P G L F + G L Sbjct: 373 T--RAAHGSLVDDVFVVDADGTDERRLTHGRRTSAPTFGPDGDRLAFVATEGGTANVHLR 430 Query: 420 SIDLNG 425 ++ G Sbjct: 431 ALKTGG 436 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQ 393 G+D++R++ + S P + P GD +AF G + + K G R+ + ++Q Sbjct: 391 GTDERRLTHGRRTS--APTFGPDGDRLAFVATEGGTANVHLRALKTGGTTRVTDYEGDVQ 448 Query: 394 --APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 A W P+ +L F+R + + LY +D T + PA Sbjct: 449 ITALRWHPTQDTLAFARVSEAERELVLYDLDTGA--STALTDPA 490 >gi|168699314|ref|ZP_02731591.1| peptidase S9, prolyl oligopeptidase active site region [Gemmata obscuriglobus UQM 2246] Length = 706 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 29/200 (14%) Query: 247 DRAPKRIGNFRSM--ILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSNATERLTNTLFI 303 D+ P ++ + + + +P+ S +GK + V D + S L AT+ T I Sbjct: 23 DKRPMKVQDLFAFKRVASPQISPDGKAVVYQVTTVDLGANKSSTALWLAATDGKTEPKQI 82 Query: 304 -------NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +++ +SPD ++++FES R G QL+V+ + S AS + W+P Sbjct: 83 TDPKGKKDMNPRWSPDGTRVLFESTRSGTPQLWVLTVGEEPKPVTSISTGAS--NGTWAP 140 Query: 357 QGDLIAFT-----KFSGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 G +AF +FS + F + K+ +E +E S ++A T+ + +F R Sbjct: 141 DGKSVAFVSTVYPEFSEKPFPESDKLNKEKDEE---IEKSPVKAKTF-----TKLFYRHW 192 Query: 411 D---GDTGSKLYSIDLNGRN 427 D GD L+ +L+G + Sbjct: 193 DDYVGDKRQHLFVCNLDGTD 212 >gi|85710926|ref|ZP_01041987.1| putative exported peptidase [Idiomarina baltica OS145] gi|85695330|gb|EAQ33267.1| putative exported peptidase [Idiomarina baltica OS145] Length = 1068 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R +I+ P S +G + S Q D I+++ RLT S +S D I Sbjct: 25 RPLIMQPEISPDGTQIAFSYQGD----IWTMSTSGTHPNRLTIHEGYESSPKWSKDGKTI 80 Query: 317 VFESDREGKEQLYVMQSNGSDQKRIS 342 F SDR G + ++VM S G R++ Sbjct: 81 AFSSDRFGNDDVFVMPSQGGRPDRLT 106 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 27/237 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 SL V GA+ P R ++ +P SP+ ++A++ D ++ M T P Sbjct: 7 SLLVSAAFGASASNGAPER-PLIMQPEISPDGTQIAFSYQGD-----IWTMSTS-GTHPN 59 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R+ +P++S +GK S + D++ + Q +RLT + + Sbjct: 60 RLTIHEGYESSPKWSKDGKTIAFSSDRFGNDDVFVMPSQGGRPDRLTYHSAPDRVLGFGH 119 Query: 312 DSSQIVFESDR-----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--- 363 D +Q++F + R E + ++Y + +G + D A FD V SP G IAF Sbjct: 120 D-NQVLFNTRRLYAEVEREWEVYGVAPSGDATEARFMD--ALGFDAVVSPDGKKIAFVRG 176 Query: 364 -TKFSGEKFAIGVMK-------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + S E + + + G E+L D N P WS S L F + G Sbjct: 177 TCRISREDYRGPANRNIWIYDTETGEYEQLTDFDGNDFMPQWS-SNNELYFISSRAG 232 >gi|212693127|ref|ZP_03301255.1| hypothetical protein BACDOR_02634 [Bacteroides dorei DSM 17855] gi|212664232|gb|EEB24804.1| hypothetical protein BACDOR_02634 [Bacteroides dorei DSM 17855] Length = 706 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 10/146 (6%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S S SPD +I + S+ + +YVM ++G + ++Q + +P W G Sbjct: 58 SLSISPDGKKIAYTVAYYSVSENKSHHVIYVMNTDGKNNTLLTQ-TAWNESEPQWIKGGT 116 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF-SRKKDGDTGSK 417 IAF I M DG++ R++ + +++ ++SP G+ ++F S+ K G Sbjct: 117 KIAFLCNESGGSQIWEMNPDGTERRIISDFKGDIEGFSFSPDGKKILFISQIKYGQRTVD 176 Query: 418 LYSIDLNGRNETLINTPAYASDPQWV 443 LY DL + ++N Y +WV Sbjct: 177 LYP-DLPKASGIIVNDLMYKHWDEWV 201 >gi|329961445|ref|ZP_08299550.1| peptidase, S9A/B/C family, catalytic domain protein [Bacteroides fluxus YIT 12057] gi|328531793|gb|EGF58619.1| peptidase, S9A/B/C family, catalytic domain protein [Bacteroides fluxus YIT 12057] Length = 715 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD QI + S + +++VM ++GS +I++D P W G IAF Sbjct: 62 SPDEKQIAYSVAYYSVSQNKSNNEIFVMNADGSGNTQITRDAWQES-QPTWFKDGKKIAF 120 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + M DGS + L D +++ ++SP G+ L+F Sbjct: 121 LCNESGSSQVWEMNPDGSDRKQLTRYDGDIEGFSFSPDGKKLLF 164 >gi|315499889|ref|YP_004088692.1| wd40-like beta propeller containing protein [Asticcacaulis excentricus CB 48] gi|315417901|gb|ADU14541.1| WD40-like beta Propeller containing protein [Asticcacaulis excentricus CB 48] Length = 275 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 14/113 (12%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +S D I F S+R G+ QL+ ++ +G + +R+S A +F P SP + + + Sbjct: 162 FSTDGEWIWFNSNRSGQMQLWRIRRDGRELQRMSDSPYADWF-PHPSPDDRHVLWLSYDS 220 Query: 369 ---------EKFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSR 408 + + +M +G + L E + P W+P G+S F R Sbjct: 221 SVGRDHPRDQTVRLRLMPAEGGEAETLFELFGGQGTMNVPNWAPDGQSFAFVR 273 >gi|56964382|ref|YP_176113.1| acylamino-acid-releasing enzyme [Bacillus clausii KSM-K16] gi|56910625|dbj|BAD65152.1| acylamino-acid-releasing enzyme [Bacillus clausii KSM-K16] Length = 648 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%) Query: 258 SMILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFIN---ISAS 308 + + +P + +GK A I V K D +IY +D+Q ++ ++ F N IS Sbjct: 14 TTVTSPAVAPDGKSAAIVVTKMDKQKNDYIANIYGLDMQKSS--HVSQWTFGNDKHISPK 71 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +S + + + S+R GK Q+YV Q ++ + + F WSP G IAF + Sbjct: 72 WS-STGALAYLSNRTGKMQVYVKQGMAEAEQLTDLENGVNAF--FWSPDGSKIAFAAY 126 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 11/98 (11%) Query: 265 FSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI-V 317 FS+NG+ L++ +E A+D++ +DL + A ++T + S S SPD S + + Sbjct: 189 FSANGRAVLVAGSHNENNDFTFAVDVWFIDLDTGAKTQITKEPMVVQSGSVSPDGSYVAL 248 Query: 318 FESDREGKE----QLYVMQSNGSDQKRISQDKEASYFD 351 +RE K +LYV + + +S +AS D Sbjct: 249 LGHEREYKNATLTKLYVYDCQKQEIRLLSSQLDASIGD 286 >gi|300787956|ref|YP_003768247.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Amycolatopsis mediterranei U32] gi|299797470|gb|ADJ47845.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Amycolatopsis mediterranei U32] Length = 648 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 26/154 (16%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN------- 304 R + ++++ R + G L +V++ DL++NAT + ++ Sbjct: 2 RPADIEALVVPGRPALRGNLLLTAVKRP--------DLRANATHSAVRRVSLDGGEAAWT 53 Query: 305 -----ISASYSPDSSQIVFESDREGK-----EQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + + SPD + F EG+ QL+VM S+G + +R++ +PVW Sbjct: 54 HGPRDSAPAISPDGRWVAFLRAGEGQGADGSPQLHVMPSDGGEARRLTS-LHLGAGEPVW 112 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +P IAFT E G DG E Sbjct: 113 APDSRRIAFTARVPEAGRYGTPDADGETPEPAAE 146 >gi|166713322|ref|ZP_02244529.1| hypothetical protein Xoryp_18265 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 785 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 305 ISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDL 360 +S S+SPD+ ++F S G ++ + + ++ A FD P +SP G Sbjct: 330 LSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTLNYPAHAGDFDYAPRYSPDGHW 389 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I F + + + G+ ERL + ++ +W P G +IF R+ D + ++LY Sbjct: 390 IVFLRNPQLGDLWRIPAEGGAAERLTHDTGDIWGWSWLPDGSGVIFGRRVDIE--ARLYR 447 Query: 421 IDLNGRN 427 +DL R+ Sbjct: 448 LDLLDRS 454 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 15/148 (10%) Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQG 358 +++ S SPD + + + S DR G L ++S + R+ + D P WSP G Sbjct: 232 DLTPSLSPDGAMVAYASLTSDRTGTSIL--VKSTDNAYPRVLETPAPGVSDRLPAWSPDG 289 Query: 359 DLIAFTKFSGEKFAIGVM-------KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 IAF++ + + + VM ++E + +++ + +WSP R+L+F Sbjct: 290 REIAFSRQAPDG-SCRVMIAAAAATTPAAAREVARCDGADMLSFSWSPDARALLFGSMTG 348 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASD 439 +++ ++L +N PA+A D Sbjct: 349 SYGAARIRRLNLETGQWQTLNYPAHAGD 376 >gi|145590728|ref|YP_001152730.1| peptidase S41 [Pyrobaculum arsenaticum DSM 13514] gi|145282496|gb|ABP50078.1| peptidase S41 [Pyrobaculum arsenaticum DSM 13514] Length = 1016 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 37/182 (20%) Query: 276 VQKDEAMDIYSVDL---QSNATERLTNTLFINISASYSPDSSQIVF----ESDREGKEQL 328 + DE + + DL + A +RLT+ + I +SPD I F ++D+ + Sbjct: 10 IHGDEIVFVTEDDLWRYRGGAGQRLTSDFGVVIRPKFSPDGKWIAFTRLQQTDQGTTSDV 69 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQ 382 YV+ + G + +R++ W+P G ++A++ + E +AI + DG+ Sbjct: 70 YVIPAEGGEPRRLTYFGTPFTRVVGWTPDGRVLAYSDYKTPFPQWRELYAIAL---DGTY 126 Query: 383 ERL----------------LVEDSNLQAPTWS---PSGRSLIFSRKKDGDTGSKLYSIDL 423 ERL ++ +N + P W R +++ + G T +K +DL Sbjct: 127 ERLNLGPATALVYGDGGVVVLGRNNYELPHWKRYRGGARGVLWISRDGGKTFAKF--LDL 184 Query: 424 NG 425 G Sbjct: 185 PG 186 >gi|45934815|gb|AAS79479.1| hypothetical protein [Streptomyces bikiniensis] Length = 1066 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 34/169 (20%) Query: 263 PRFSSNGKRALISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 PR + +G L D++ V RLT+T + SPD ++I + Sbjct: 127 PRLTPDGGSVLFDAADPAGGSQRDLWLVRTDGTGLTRLTDTPASEEDPAVSPDGARIAYS 186 Query: 320 SDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-----LIAFTKFSGEKFA 372 SD + Q+YV G R++ + +P W+P D IA+T + E Sbjct: 187 SDADPLAGRQIYVRALTGGIPTRLTDPARGTASEPAWNPVDDDVNRAWIAYTSTTTE--- 243 Query: 373 IGVMKKDG-SQERLLVEDSNL--------------QAPTWSPSGRSLIF 406 DG +++RL + D W P G ++F Sbjct: 244 ------DGRTRQRLRITDGTTDETLFTGAYANWQGHGAAWLPDGDGIVF 286 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 30/136 (22%) Query: 308 SYSPDSSQIV---FESDREGK-EQLYVMQSNGSDQKRISQDKEASY---FDPVWSPQGDL 360 +Y+PD ++V FE + + E+++ ++G+++ + D + DP +SP G Sbjct: 402 NYTPDGRRLVLTRFEGPDDARIERIWTADADGTNEAPMPLDGRGARDWDTDPTFSPDGTR 461 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-----------------APTWSPSGRS 403 +AFT+ S GV + G LL E + + PTWS G + Sbjct: 462 LAFTRTS----PGGVGEAAGDSRILLAEVATGRITGEIVPPAGELRGGDAQPTWSSDGTT 517 Query: 404 LIFSRKKD--GDTGSK 417 L F+R + G GSK Sbjct: 518 LAFTRARQIAGGGGSK 533 >gi|119470806|ref|ZP_01613417.1| N-terminal winged-HTH domain fused to TolB-like domain [Alteromonadales bacterium TW-7] gi|119446033|gb|EAW27312.1| N-terminal winged-HTH domain fused to TolB-like domain [Alteromonadales bacterium TW-7] Length = 622 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N +I FS +G L+ + K + S E L +T I+ YSPDSS Sbjct: 331 NNYHIIRDAHFSLSGNDILMELVKIDVDITRSTRQAPTQFETLVDTSSIDFLPVYSPDSS 390 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + VFES R G +QL++ + N + S F VWS G+ Sbjct: 391 KFVFESHRFGTKQLFLYE-NSTQTLIFSNPDNEELFGIVWSKNGE 434 >gi|332525793|ref|ZP_08401936.1| peptidase S9 prolyl oligopeptidase [Rubrivivax benzoatilyticus JA2] gi|332109346|gb|EGJ10269.1| peptidase S9 prolyl oligopeptidase [Rubrivivax benzoatilyticus JA2] Length = 679 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 18/116 (15%) Query: 306 SASYSPDSSQIVFESDREGKE------QLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQ 357 + S SPD +Q V R E L++ + G + ++ DK+ P WSP+ Sbjct: 19 APSLSPDGAQAVAAVTRYSMEDNKSASSLWLFSTLGGAARALTACGDKDGQ---PRWSPK 75 Query: 358 GDLIAFT---KFSGEK---FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 GDL+AF + GEK + V+ DG + R + ++A W P GR L+F Sbjct: 76 GDLVAFVARREQQGEKDETAQLYVIAPDGGEARRAATVATGIEAFRWCPDGRRLLF 131 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 310 SPDSSQIVFESDREGKEQL---YVMQSNGSDQKRIS---QDKEASYFDPVWSPQGDLIAF 363 SPD ++VF D ++++ + + R+S QD + P +SP+G+ IAF Sbjct: 220 SPDGKRVVFAFDPAPEKRIDNRFALAELELKSGRVSVIVQDADWDCSAPRYSPEGERIAF 279 Query: 364 -TKFSGEKFA----IGVMKKDGSQERLLVE--DSNLQAP-TWSPSGRSLIFSRKKDGDTG 415 G K + V +D S+ +L E D ++QAP W G++L+ ++ G Sbjct: 280 IASHQGRKHTMPGQVAVWYRDESRWEVLSEAWDHDVQAPLAWEDDGQALLLRAEQRGR-- 337 Query: 416 SKLYSIDLNGRNETLI 431 L+ DL R L+ Sbjct: 338 QHLWRFDLPDRRAELV 353 >gi|115473615|ref|NP_001060406.1| Os07g0638100 [Oryza sativa Japonica Group] gi|27261082|dbj|BAC45195.1| unknown protein [Oryza sativa Japonica Group] gi|113611942|dbj|BAF22320.1| Os07g0638100 [Oryza sativa Japonica Group] Length = 659 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSN-----GSDQKRISQDKEASYFD--PVWSPQGDL 360 + SP +VF S R G + LY++ + G+ + I + + + D P WSP G L Sbjct: 453 AVSPCGKWVVFRSGRSGHKNLYIVDAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSL 512 Query: 361 IAFT-----KFSGEKFAIGVMKKDGSQER 384 IAF+ + F+I +++ DGS R Sbjct: 513 IAFSSNRHDPTNAAVFSIYLVRPDGSGLR 541 >gi|291302348|ref|YP_003513626.1| peptidase S41 [Stackebrandtia nassauensis DSM 44728] gi|290571568|gb|ADD44533.1| peptidase S41 [Stackebrandtia nassauensis DSM 44728] Length = 1089 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 PRF + ++ V +D D++SV RLT + SPD S I + Sbjct: 6 PRFPAIHNDTIVFVAED---DLWSVTTAGGTARRLTAGVAAASFPRISPDGSLIAYTGAE 62 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 EG ++V+ + G + +R++ + W P G+ + + Sbjct: 63 EGPPDVHVVPTEGGETRRLTYEGGRISRVAGWDPTGEFVIYA 104 >gi|125559315|gb|EAZ04851.1| hypothetical protein OsI_27029 [Oryza sativa Indica Group] Length = 659 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSN-----GSDQKRISQDKEASYFD--PVWSPQGDL 360 + SP +VF S R G + LY++ + G+ + I + + + D P WSP G L Sbjct: 453 AVSPCGKWVVFRSGRSGHKNLYIVDAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSL 512 Query: 361 IAFT-----KFSGEKFAIGVMKKDGSQER 384 IAF+ + F+I +++ DGS R Sbjct: 513 IAFSSNRHDPTNAAVFSIYLVRPDGSGLR 541 >gi|256394899|ref|YP_003116463.1| periplasmic component of the Tol biopolymer transport system-like protein [Catenulispora acidiphila DSM 44928] gi|256361125|gb|ACU74622.1| Periplasmic component of the Tol biopolymer transport system-like protein [Catenulispora acidiphila DSM 44928] Length = 635 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 35/263 (13%) Query: 193 LCVMDRDGANIRYLTPSRDQI-----LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L + + DG+ L PS + + +FEP SP+ +VA+ + + +R Sbjct: 50 LVITNPDGSGTHLLHPSGNGLSATSQIFEPAVSPDGSRVAFGDVASRAVWVAGVDGSR-- 107 Query: 248 RAPKRIGNFRSMIL--APRFSSNGKRALISVQKDEAMDIYSV---DLQSNATERLTNTLF 302 P RI + + P +S +G + + A + + D A T T Sbjct: 108 --PVRISSPTGSAVDSEPTWSPDGTSVFFTRRAGTAQIMKASADGDHDEAAVFFPTGTND 165 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S + + D + FE + G ++V+ + + P WSP G +A Sbjct: 166 TEPSVAVNGD---LAFERNVNGTSTIFVLAAGAGSATPFANGAR-----PAWSPDGSRLA 217 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + S ++K QE L+ S +QA P W+ G + F G +++ Sbjct: 218 YDRGSAL-----LVKTRAGQES-LIGTSGVQASRPAWAADGAHIAFEGSVPGHH-RQIWV 270 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 +D TL +P A P V Sbjct: 271 VD----TSTLTVSPVGAEPPDGV 289 >gi|157164610|ref|YP_001466350.1| translocation protein TolB [Campylobacter concisus 13826] gi|112800116|gb|EAT97460.1| protein TolB [Campylobacter concisus 13826] Length = 418 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 5/158 (3%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M++A S +G + L+++ + DI+ + S ++TN I+++ ++ + S+IVF Sbjct: 237 MLIASDVSKDGSKILLTMAPKDQPDIFIYNTGSKNLTQITNYPGIDVNGNFVDNDSRIVF 296 Query: 319 ESDREGKEQLYVM--QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 SDR G ++ S GS ++ + K + V + + ++ ++ + F I ++ Sbjct: 297 VSDRLGYPNIFATPATSGGSVEQMVFHGKNN---NSVSTFENYVVYSSREASGGFNIYLI 353 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 R L + P +S G+S++F ++ G + Sbjct: 354 STQTDFIRQLTANGKNNYPRFSSDGQSVVFIKELGGQS 391 >gi|108760758|ref|YP_633450.1| S9C family peptidase [Myxococcus xanthus DK 1622] gi|108464638|gb|ABF89823.1| peptidase, S9C (acylaminoacyl-peptidase) subfamily [Myxococcus xanthus DK 1622] Length = 711 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVF 318 +L FSS+ KR L S + +++SV + +LT +T +I+ +Y P +++F Sbjct: 123 VLGASFSSDEKRVLYSSNETGVFNVFSVPVTGGKPTQLTRSTQDASIAVAYFPTDDRVLF 182 Query: 319 ESDREGKE--QLYVMQSNGSDQKRISQDKE-ASYFDPVWSPQGDLIAFTKFSGEK 370 D G E LYV +G ++ D+ AS+F WS G AF + E+ Sbjct: 183 TRDSGGNELVHLYVRTLDGQEKDLTPGDEHRASFFG--WSQDG--AAFYVLTNER 233 >gi|308069072|ref|YP_003870677.1| peptidase yuxL [Paenibacillus polymyxa E681] gi|305858351|gb|ADM70139.1| Probable peptidase yuxL [Paenibacillus polymyxa E681] Length = 675 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 14/134 (10%) Query: 288 DLQSNATERLTNT-----LFINISASYSPDSSQIVFESDREGKEQ------LYVMQSNGS 336 D QS+ T+R L+ + P S +I + KE+ ++++ S G+ Sbjct: 3 DSQSSTTKRCVTAEDLYRLYWVSDPAIHPISGEIAYVEQHINKERTDYNSGIWLLSSEGA 62 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAP 395 + + PVWSP G +AF + + K + ++ + G + R L ++N+++ Sbjct: 63 SALPFTYGPKDE--TPVWSPDGSQLAFLRTTDGKRQVWIIPERGGEARQLTHVENNVRSL 120 Query: 396 TWSPSGRSLIFSRK 409 WSP G + F K Sbjct: 121 AWSPEGTCISFVAK 134 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 39/136 (28%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD SQ+ F +GK Q++++ G + ++++ E + WSP+G I+F + Sbjct: 78 WSPDGSQLAFLRTTDGKRQVWIIPERGGEARQLTH-VENNVRSLAWSPEGTCISFVAKTA 136 Query: 369 EKFAIGV-------------------MKKDG------SQERLLVED-------------S 390 E + K DG +++ L V D Sbjct: 137 ENPSSPTSDGGTQEAQLKGRVVNRTKAKSDGYGLWDDTRDHLYVTDVTSGHTIQQTSGAY 196 Query: 391 NLQAPTWSPSGRSLIF 406 ++ P WSP GR ++F Sbjct: 197 DVAEPVWSPDGRRILF 212 >gi|303235446|ref|ZP_07322060.1| dipeptidyl peptidase IV N-terminal domain protein [Prevotella disiens FB035-09AN] gi|302484361|gb|EFL47342.1| dipeptidyl peptidase IV N-terminal domain protein [Prevotella disiens FB035-09AN] Length = 1087 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+SV + +LT + +SPD I F S REG +Y+M +G KR++ Sbjct: 45 DIFSVPVNGGIARQLTTNPAYDAYPVWSPDGQNIAFSSSREGSLDIYLMSKDGGTPKRLT 104 Query: 343 QD 344 + Sbjct: 105 TN 106 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 L++ SA SPD I F K ++ + NG ++++ + + PVWSP G Sbjct: 24 LWLRYSA-ISPDGKTIAFSY----KGDIFSVPVNGGIARQLTTNPAYDAY-PVWSPDGQN 77 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 IAF+ I +M KDG + L +S + P ++F+ Sbjct: 78 IAFSSSREGSLDIYLMSKDGGTPKRLTTNSGSETPMAFKDNNHILFT 124 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 33/124 (26%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y L T+++TNT + ++PD IV+ S+R G Q+Y + +I Sbjct: 332 DVYVTSLDYKTTKQVTNTAEQERNIDFAPDGRGIVYSSERNGIWQIY--------ETKIK 383 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 E ++ + DL+ +ERL D Q P +SP G+ Sbjct: 384 NKAEKNF-----TYSTDLV--------------------EERLTNTDQTSQMPQYSPDGK 418 Query: 403 SLIF 406 + F Sbjct: 419 KVAF 422 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 11/78 (14%) Query: 352 PVW------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 P+W SP G IAF+ + G+ F++ V +G R L + A P WSP G+++ Sbjct: 23 PLWLRYSAISPDGKTIAFS-YKGDIFSVPV---NGGIARQLTTNPAYDAYPVWSPDGQNI 78 Query: 405 IFSRKKDGDTGSKLYSID 422 FS ++G L S D Sbjct: 79 AFSSSREGSLDIYLMSKD 96 >gi|300709435|ref|YP_003735249.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halalkalicoccus jeotgali B3] gi|299123118|gb|ADJ13457.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halalkalicoccus jeotgali B3] Length = 666 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 263 PRFSSNGKR-ALISVQKDEAMD----IYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P+ S +G+R A + +A + I+ L + R T T I+ +SP + Sbjct: 18 PQLSPDGERVAFVRTTPRDAEESEATIHIASLGGEGSRRFTLTAGIDSEPRWSPSGDHLS 77 Query: 318 FESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 F S R + + QL+V ++G + +RI++ + W P G+ IAF + S Sbjct: 78 FVSTRGDDDRPQLWVAPADGGEARRITEGV-GGVSNIAWRPDGEGIAFVQSS 128 >gi|262196481|ref|YP_003267690.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079828|gb|ACY15797.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1398 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 23/268 (8%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS ++ V DG + + D+ +F FSP+ + A+ D +RV+ D Sbjct: 1076 IVSASEDKTVRVWRADGQSEPLILSGHDEPVFSTSFSPDGAHIVSASED--KTVRVWRAD 1133 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + P + + + FS +G ++S D+ + ++ D Q + + Sbjct: 1134 GTGE--PLILRGHDDEVRSASFSPDGAH-IVSASWDKTVRVWRADGQGQPLILRGHDDGV 1190 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S S+SPD + IV S + + V +++G Q I + + + +SP G I Sbjct: 1191 T-STSFSPDGAHIVSAS---WDKTVRVWRADGQGQPLILRGHDKAVISASFSPDGAHIVS 1246 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + V DGS E L++ D + +SP GR ++ + K D +++ Sbjct: 1247 AALDN---TVRVWNADGSGEPLILRGHDDWVSWAEFSPDGRFIVSASK---DKTIRIWRA 1300 Query: 422 DLNGR------NETLINTPAYASDPQWV 443 D G +E NT ++ D Q V Sbjct: 1301 DGMGEPVILRGHEQWPNTARFSPDGQRV 1328 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D AP + + FS +G L+S D+ + ++ D + L IS Sbjct: 967 DVAPVVFTEHDEAVYSASFSPDGAH-LVSTSADKTVRVWRAD-GTGEPLILRGHDEAVIS 1024 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 AS+SPD + IV S + + V +++G Q I + + + + +SP G A Sbjct: 1025 ASFSPDGAHIVSAS---ADKTVRVWRADGQGQPLILRGHDEAVYSASFSPDG---AHIVS 1078 Query: 367 SGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 + E + V + DG E L++ D + + ++SP G ++ Sbjct: 1079 ASEDKTVRVWRADGQSEPLILSGHDEPVFSTSFSPDGAHIV 1119 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 28/231 (12%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS ++ V DG + D+ ++ FSP+ + A+ D +RV+ D Sbjct: 1034 IVSASADKTVRVWRADGQGQPLILRGHDEAVYSASFSPDGAHIVSASED--KTVRVWRAD 1091 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD-------LQSNATER 296 + + P + + + FS +G ++S +D+ + ++ D L+ + E Sbjct: 1092 GQSE--PLILSGHDEPVFSTSFSPDGAH-IVSASEDKTVRVWRADGTGEPLILRGHDDEV 1148 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 SAS+SPD + IV S + + V +++G Q I + + +SP Sbjct: 1149 R--------SASFSPDGAHIVSAS---WDKTVRVWRADGQGQPLILRGHDDGVTSTSFSP 1197 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 G I + + V + DG + L++ D + + ++SP G ++ Sbjct: 1198 DGAHIVSASWDK---TVRVWRADGQGQPLILRGHDKAVISASFSPDGAHIV 1245 >gi|88704759|ref|ZP_01102472.1| peptidase yuxL [Congregibacter litoralis KT71] gi|88701080|gb|EAQ98186.1| peptidase yuxL [Congregibacter litoralis KT71] Length = 665 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 60/294 (20%), Positives = 109/294 (37%), Gaps = 62/294 (21%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + +M +G +T S D PR+SP+ + +++ E+ R+ Sbjct: 64 RTRIWMMSTEGGEPIPMT-SPDSSASRPRWSPDNKYLSFTASRGENARTQVWSLNRLGGE 122 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI------------YSVDLQS------ 291 ++ N + + +S +G R L++++ D+ Y +D Sbjct: 123 AMQVTNVKQGVSDFAWSPDGTRLLLTIKDPRPADLTEDKDDDDKPLPYVIDRMQFKQDYQ 182 Query: 292 NATERLTNTLFINISAS-----------------YSPDSSQIVFESDREGKEQLYV---- 330 +R + L++ +SPD + F SDR LY Sbjct: 183 GYLDRRRDHLYVYTPGDDAPVQITFGDYDDDDPVWSPDGKSVAFVSDRSENPDLYYGSNI 242 Query: 331 ----MQSNGSDQKRISQD--KEASYFDPVWSPQGDLIAFTKFSGEKFA---------IGV 375 + K+I++D +E S P WSP G IA+ G + + Sbjct: 243 WVVDVDDENHRLKKITKDSGRERS---PSWSPDGKSIAYISSLGPDVGGSALTPTRRLAL 299 Query: 376 MKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + DG + ++L D NL P +S GR + F + +G L SI +G+N Sbjct: 300 ARLDGEKRQILTPKLDRNLSDPQFSDDGRRISFRLEDEGQV--HLASIGTDGKN 351 >gi|116620945|ref|YP_823101.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116224107|gb|ABJ82816.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 667 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + + SP ++VF R G QL+ +G + + P WSP G I+FT Sbjct: 127 APAVSPKGDKVVFI--RAG--QLWWAPLDGKAEASQVFQARGACDRPRWSPDGARISFTS 182 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSR 408 G+ IGV R L + N P WSP GRS+ F R Sbjct: 183 ARGDHGFIGVFDVAAGALRYLDPSTDNDSEPEWSPDGRSVAFLR 226 >gi|331695749|ref|YP_004331988.1| putative acylaminoacyl-peptidase [Pseudonocardia dioxanivorans CB1190] gi|326950438|gb|AEA24135.1| putative acylaminoacyl-peptidase [Pseudonocardia dioxanivorans CB1190] Length = 643 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 18/143 (12%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-------------VWSP 356 PD + + SDR+G+ +LYV + GS + + + A +P WSP Sbjct: 40 GPDGRLLAWISDRDGRPRLYVGEL-GSGPAPVVEPRAALPTEPDDRDLPHADVTGVAWSP 98 Query: 357 QGDLIA--FTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGD 413 G +A GE+ + ++ DG + R + + + +WSP+G L + G Sbjct: 99 DGSWLACQLAPGGGERTRVLLVSPDGRRRREIAPAATAVVLGSWSPNGSHLGVTIYGSGQ 158 Query: 414 TGSKLYSIDL-NGRNETLINTPA 435 + +DL +G + L + PA Sbjct: 159 GEGQACLVDLRDGTSTVLASGPA 181 >gi|284097430|ref|ZP_06385538.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] gi|283831059|gb|EFC35061.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] Length = 162 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 9/106 (8%) Query: 308 SYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SP+S +I F R G E LY++ + + +++ + Y PVW+P G+ I F ++ Sbjct: 5 SWSPNSKRIAFSLSRPGWLEHLYLLDVETKEIELLTELHKDFY--PVWAPDGNRILFLRW 62 Query: 367 SGE---KFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSR 408 + E + I + K + E L V+ + WSP G + +SR Sbjct: 63 NREFDTFYTIDIETK--TIEALFDVDKATGYWADWSPEGDYIAYSR 106 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 265 FSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +S N KR S+ + ++ +Y +D+++ E LT L + ++PD ++I+F Sbjct: 6 WSPNSKRIAFSLSRPGWLEHLYLLDVETKEIELLTE-LHKDFYPVWAPDGNRILFLRWNR 64 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + Y + + + +A+ + WSP+GD IA++++ Sbjct: 65 EFDTFYTIDIETKTIEALFDVDKATGYWADWSPEGDYIAYSRW 107 >gi|256841892|ref|ZP_05547398.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736786|gb|EEU50114.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1076 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + SPD I F + +Y + S+G ++++ A PVWSP G IAF Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTT-HPAHDTRPVWSPDGQKIAFASN 83 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 F + +M K+G + + L S + PT Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPT 113 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 27/198 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D +Y ++ T ++TNT + +SPD +V+ ++R G Sbjct: 323 SPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAERGGT 378 Query: 326 EQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +Y + + K+ + E + F P++SP G+ +AF + + + V Sbjct: 379 WGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLE---NRTTLRV 435 Query: 376 MKKDGSQERLLVEDSNL-------QAPTWSPSGRSLIFSRKKDG---DTGSKLYSIDLNG 425 + + Q R +++ L Q WSP + + G +T L D +G Sbjct: 436 INRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSG 495 Query: 426 RNETLINTPAYASDPQWV 443 L + D +WV Sbjct: 496 EVTNLTESGYSDGDAKWV 513 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD +I F S+R G +++M G + KR++ Sbjct: 45 DIYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNRSGNFDVFLMNKEGGEPKRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSTNEY 111 >gi|83945181|ref|ZP_00957530.1| Acylaminoacyl-peptidase [Oceanicaulis alexandrii HTCC2633] gi|83851351|gb|EAP89207.1| Acylaminoacyl-peptidase [Oceanicaulis alexandrii HTCC2633] Length = 687 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 14/108 (12%) Query: 351 DPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRS 403 DP SP G +A+ + S + + AI +G R LV S + +P WSP Sbjct: 42 DPQISPNGRWVAYQRRSNDIMTDQTRSAIWTAPYEGGANRPLVTGSGDYSSPRWSPDSSQ 101 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPA------YASDPQWVGF 445 ++F ++G++ K +D NGR+ TL P ++ D +W+ F Sbjct: 102 IVFIANENGESLLKKVWVD-NGRSATLAQLPGGAGNLSWSPDGRWIAF 148 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query: 241 LMDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALISVQKDEAMD------IYSVDLQSN 292 L ++ + P + + S+ +A P+ S NG+ + ++ M I++ + Sbjct: 19 LAASQAEGGPLQAADIFSLEMARDPQISPNGRWVAYQRRSNDIMTDQTRSAIWTAPYEGG 78 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQL-YVMQSNGSDQKRISQDKEASYFD 351 A L S +SPDSSQIVF ++ G+ L V NG A Sbjct: 79 ANRPLVTGSGDYSSPRWSPDSSQIVFIANENGESLLKKVWVDNGRSATLAQLPGGAGNLS 138 Query: 352 PVWSPQGDLIAFTKF---SGEKFAIGVMKKDGSQE---RLLVEDSN---LQAPTWSPSGR 402 WSP G IAFT F + IG+ K E LV+++ PSG Sbjct: 139 --WSPDGRWIAFTMFMPTPEPQVDIGMPDKPRGAEWAAPALVDETTRYEFDGAGELPSGY 196 Query: 403 SLIFSRKKDGDTGSKLYSI 421 S IF DG +L + Sbjct: 197 SQIFVAPADGGAPRQLTHV 215 >gi|329957269|ref|ZP_08297789.1| WD40-like protein [Bacteroides clarus YIT 12056] gi|328522982|gb|EGF50085.1| WD40-like protein [Bacteroides clarus YIT 12056] Length = 1090 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V + +LT + +SPDS +I F SDR G +Y++ G + +R++ Sbjct: 45 DIYTVPVGGGRAMQLTTNPAHDTEPVWSPDSKRIAFASDRMGSMDVYIVSKEGGEPRRLT 104 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S NGK ++ D +Y + T+++TNT ++PD +V+ S+R G Sbjct: 322 LSPNGKEVAFVLRGD----VYVTSVDYKTTKQITNTPCQERDVDFAPDGRSLVYASERNG 377 Query: 325 KEQLYVMQSNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAF 363 QLY D+K+ + D + + F +SP G +AF Sbjct: 378 LWQLYTSAIVRKDEKQFTYATELKEERLTDSDVTSFQLQYSPDGKEVAF 426 Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 18/122 (14%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD + I F K +Y + G +++ + A +PVWSP IAF Sbjct: 32 SPDGTTIAFTY----KGDIYTVPVGGGRAMQLTTNP-AHDTEPVWSPDSKRIAFASDRMG 86 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + ++ K+G + R L S + P + FS D G L+S D+ ET Sbjct: 87 SMDVYIVSKEGGEPRRLTTHSGSETP--------VAFS-----DAGHILFSADIMPSAET 133 Query: 430 LI 431 ++ Sbjct: 134 VL 135 >gi|311030234|ref|ZP_07708324.1| acylamino-acid-releasing enzyme [Bacillus sp. m3-13] Length = 592 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS--- 308 ++ N L+P + K+ + S +++++DL + LT F N S Sbjct: 14 KVFNIEDFTLSP----DEKQLVYSTNLTGHYNVWAMDLPNQYPYPLT---FNNQSCHGLK 66 Query: 309 YSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 Y P+ I+ D++G E QLY + S G + + + D E + +P +S G I +T Sbjct: 67 YDPNGKYILASFDKDGNELAQLYALPSRGGELQDVRVDNEHRHMNPSFSKDGQRIYYTST 126 Query: 367 SGEKFAIGVMKKD--GSQERLLVEDSN 391 + + D +E+LLVE ++ Sbjct: 127 KDNQTYLNCFCYDLETKEEKLLVEGTD 153 >gi|153808296|ref|ZP_01960964.1| hypothetical protein BACCAC_02584 [Bacteroides caccae ATCC 43185] gi|149129199|gb|EDM20415.1| hypothetical protein BACCAC_02584 [Bacteroides caccae ATCC 43185] Length = 1096 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + T+++TNT S++PD +V+ S+R G QLY ++K+ + Sbjct: 335 DVYVTSIDYKTTKQITNTPDQERDISFAPDGRTLVYSSERNGLWQLYTSTIVRKEEKQFT 394 Query: 343 QDKE----------ASYFDPVWSPQGDLIAF 363 E + F P +SP G IAF Sbjct: 395 YATELKEECLTKSNVASFQPQYSPDGKEIAF 425 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V ++T + + +SPD QI F SDR G ++V+ G +R++ Sbjct: 45 DIYTVPSTGGRATQITTNPAFDTTPVWSPDGKQIAFASDRMGSLDVFVVAKEGGVPQRLT 104 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 9/103 (8%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT 364 + SPD + I F K +Y + S G +I+ + FD PVWSP G IAF Sbjct: 29 CALSPDGTTIAFTY----KGDIYTVPSTGGRATQITTNPA---FDTTPVWSPDGKQIAFA 81 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + V+ K+G + L S + P + ++F+ Sbjct: 82 SDRMGSLDVFVVAKEGGVPQRLTTHSGSEKPVAYKDDKHILFT 124 >gi|291294725|ref|YP_003506123.1| WD40 domain-containing protein beta Propeller [Meiothermus ruber DSM 1279] gi|290469684|gb|ADD27103.1| WD40 domain protein beta Propeller [Meiothermus ruber DSM 1279] Length = 901 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 39/84 (46%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS +G+ + S + ++Y+ L+ A ++TN L ++S QI+F Sbjct: 483 PVFSPDGRYVIYSSDVNRVYNLYAYRLEDGAVFQVTNLLTGAFQPTFSHSQQQIIFSGYD 542 Query: 323 EGKEQLYVMQSNGSDQKRISQDKE 346 E LY + N S KR+ +E Sbjct: 543 ETGYNLYQLPYNPSAWKRVELPRE 566 >gi|288555459|ref|YP_003427394.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Bacillus pseudofirmus OF4] gi|288546619|gb|ADC50502.1| peptidase S9 prolyl oligopeptidase active site domain protein [Bacillus pseudofirmus OF4] Length = 663 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 8/104 (7%) Query: 310 SPDSSQIVF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD +VF E + + L++ +G Q R + S P WSP G IAF Sbjct: 22 SPDGKNVVFVQTVINEDKHDYESHLFISDIDGK-QVRQWTFGDGSDNTPAWSPDGRFIAF 80 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIF 406 T K I ++ +G + R + N + P WSP ++F Sbjct: 81 TSTRSGKSQIYLISAEGGEARQITSCLNGAKNPIWSPDSSKILF 124 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + ++SPD I F S R GK Q+Y++ + G + ++I+ + +P+WSP I F Sbjct: 68 TPAWSPDGRFIAFTSTRSGKSQIYLISAEGGEARQITSCLNGAK-NPIWSPDSSKILF 124 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%) Query: 217 PRFSPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRA 272 P+ SP+ + V + +D+ +L + ID R F P +S +G+ Sbjct: 19 PQLSPDGKNVVFVQTVINEDKHDYESHLFISDIDGKQVRQWTFGDGSDNTPAWSPDGRFI 78 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + IY + + ++T+ L + +SPDSS+I+FE E+L Sbjct: 79 AFTSTRSGKSQIYLISAEGGEARQITSCLNGAKNPIWSPDSSKILFEGSLAPNEKL---- 134 Query: 333 SNGSDQKRISQDKEASYFDPVWSP--------QGDLIAFTKFSGEKFAIGVMKKDGSQER 384 +D+KR DK+ D + P + D F + I V + G + Sbjct: 135 ---TDKKR---DKKEKNGDKLPEPMVVERIRYKSDATGFLDDKNQHLGI-VTVETGEVLQ 187 Query: 385 LLVEDSNLQAPTWSPSGRSLIFS 407 L D + A WS G+S++FS Sbjct: 188 LTDGDRDHAAGAWSADGQSIVFS 210 >gi|317011325|gb|ADU85072.1| translocation protein TolB [Helicobacter pylori SouthAfrica7] Length = 417 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 15/217 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGKRALIS 275 PR++ +Q Y T E + ++ I +A ++I + + M + SS+G + L+S Sbjct: 190 PRWANAEQTEFYYTQYGER--KPMILKYNIQKATHEKITSSQGMAVVSSVSSDGSKILMS 247 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D D+Y D + ++T+ I++S + D + F SDR G +Y M+ G Sbjct: 248 LAPDGQPDVYLYDTHKKTSTKITHYPGIDVSGVFLEDDKSMAFVSDRSGYPNIY-MKKLG 306 Query: 336 ---SDQKRISQDKEASYFDP-----VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 S ++ + + + D V+ + +L +F F + ++ + R L Sbjct: 307 LKESAEQLLYEGRSNESIDAYKDSIVYVSRENL---NEFGKTVFNLNLITLNSKYIRRLT 363 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + Q P +S G+++++ +K + L +D N Sbjct: 364 VNGSNQMPRFSIDGKNIMYIKKTPQEYAMGLILLDYN 400 >gi|304398058|ref|ZP_07379933.1| WD40 domain protein beta Propeller [Pantoea sp. aB] gi|304354344|gb|EFM18716.1| WD40 domain protein beta Propeller [Pantoea sp. aB] Length = 422 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 17/128 (13%) Query: 296 RLTNTLFINISASY----SPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYF 350 RLT++ + + + +PD SQI F G+ QL+++ NG + ++I+ + Sbjct: 286 RLTHSRGVALQPRHWLRAAPDGSQIAFLMADAGEVIQLWMVSPNGGEPRQITHLSHSIQS 345 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKD---GSQERLL---VEDSNLQAPTWSPSGRSL 404 W P+G IAF + VM+ D G+ +RL E + A WSP G + Sbjct: 346 AFSWHPEGQAIAFICDNS------VMRCDIESGACQRLTGRTEEAPSGDAVVWSPDGTQI 399 Query: 405 IFSRKKDG 412 + R+ +G Sbjct: 400 AYMREVNG 407 >gi|328884293|emb|CCA57532.1| hypothetical protein SVEN_4246 [Streptomyces venezuelae ATCC 10712] Length = 575 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 19/241 (7%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI----LFEPRFSPNQQKVAYATY 231 R++F V G+ +S+ ++ DG + R L PS + + +SP+ ++A+ Sbjct: 58 RVVFTEYKTVDGVRHSSIITVNTDGTDRRTLVPSGPGLTPADISGVSYSPDGLRMAFINN 117 Query: 232 DDEDILRVYLMDTRIDRAPKR--IGNFRSMILAPRFSSNGKRALISVQKDEAMD---IYS 286 D + V D R R P R + + ++ +GK+ +S + D I Sbjct: 118 DGYGDIWVADADGRNAR-PVRMDVDEPDGWLTGLDWTPDGKQLYLSFRGKPGHDRLRIMR 176 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 V+L T ++ S + D+ V R + +++ D + + ++ Sbjct: 177 VNLDG------TGLGYVFASPERTWDTQVDVAWDGRITFLRGSTIRT--WDPRVGGEPQQ 228 Query: 347 ASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 +Y P +SP G+ +AF + + + DG E L + N+ P WSP G + Sbjct: 229 VAYGLHPTFSPDGERLAFAAYVDGAYDVRARVLDGGAEYSLSKGKNVLFPEWSPDGSQVA 288 Query: 406 F 406 + Sbjct: 289 Y 289 >gi|289165013|ref|YP_003455151.1| acylaminoacyl-peptidase protein [Legionella longbeachae NSW150] gi|288858186|emb|CBJ12054.1| putative acylaminoacyl-peptidase protein [Legionella longbeachae NSW150] Length = 239 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%) Query: 310 SPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD I + + + L +++ ++ + F+PVWSP + F F Sbjct: 5 SPDGKYIAYNTADHQSTNRYLAIVELKSGKVAQLQHIPSKNNFNPVWSPDSKKLIFNTFI 64 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + ++ KD S LL N P W+ G S D +T +Y ++L G+ Sbjct: 65 NNNWYLALINKDSSGYLLLNNTQNKYTPVWAQDGNSFF---THDLET---IYWMNLEGK 117 >gi|288917388|ref|ZP_06411755.1| peptidase S9 prolyl oligopeptidase active site domain protein [Frankia sp. EUN1f] gi|288351253|gb|EFC85463.1| peptidase S9 prolyl oligopeptidase active site domain protein [Frankia sp. EUN1f] Length = 785 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 16/134 (11%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TK 365 S PD + + F DR G L++ +S+G++ R+ +WSP G IA Sbjct: 80 SPGPDGA-LAFVGDRTGTPALWIRESDGTE--RVVDTGPGQVRSVLWSPDGTWIALVVAP 136 Query: 366 FSGEKFAIGVMKKDGSQERLL--------VEDSNLQAPTWSPSGRSLIFSRK-KDGDTGS 416 GE+ + V++ DG+ L E S A W GR L+ + + G T Sbjct: 137 GGGERTEVRVVQPDGTGLHQLAGGHPAGTAEPSAATAVRWLAGGRLLLVTESVRSGLT-- 194 Query: 417 KLYSIDLNGRNETL 430 ++DL+G L Sbjct: 195 HALAVDLSGHRRHL 208 >gi|32472592|ref|NP_865586.1| TolB protein [precursor] [Rhodopirellula baltica SH 1] gi|32443829|emb|CAD73270.1| probable TolB protein [Precursor] [Rhodopirellula baltica SH 1] Length = 1181 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 18/127 (14%) Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQ 357 TL S +SPD +QIV++ +M+ G D + P +SP Sbjct: 921 TLLHVGSPDWSPDGTQIVYDQQAGSTLTARLMRVDKTGGDPVDLGFGSM-----PTFSPD 975 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G IA FS + +G+M DGS +L DS+ WSP L +S +G Sbjct: 976 GKRIA---FSAARQGVGIMDADGSNRTIL--DSSGWGIQWSPIPNLLAYS------SGGS 1024 Query: 418 LYSIDLN 424 LY DLN Sbjct: 1025 LYVWDLN 1031 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 K L V++ +G+D + +++ E P WSP G I + + +G +M+ D + Sbjct: 899 KPVLSVVRIDGTDLRDLAEPNETLLHVGSPDWSPDGTQIVYDQQAGSTLTARLMRVDKTG 958 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 V+ PT+SP G+ + FS + G + +D +G N T++++ + Sbjct: 959 GD-PVDLGFGSMPTFSPDGKRIAFSAARQG-----VGIMDADGSNRTILDSSGWG 1007 >gi|156742232|ref|YP_001432361.1| WD40 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156233560|gb|ABU58343.1| WD40 domain protein beta Propeller [Roseiflexus castenholzii DSM 13941] Length = 348 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 10/156 (6%) Query: 282 MDIYSVDLQSNATERLTNTLFINISA-----SYSPDSSQIVF--ESDREGKEQLYVMQSN 334 + ++S+ Q+ RL ++ + + +++PD S IVF E G + Sbjct: 172 LALFSMPAQAGGARRL---IYADDAGHVGRVTHAPDGSAIVFVLEPATTGGVSQILRYDR 228 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 + +DP +SP G +AF G++ I + G L +A Sbjct: 229 ATGAVTPQPGIPPQSYDPAFSPDGRWLAFAGRDGDRTDIFAIPTAGGTIVRLTSIGTARA 288 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 P +SP GR + F + G L+ DL ++L Sbjct: 289 PAFSPDGRMIAFLAVAPAEIGFDLWVADLRMIGDSL 324 >gi|149279157|ref|ZP_01885290.1| putative exported peptidase [Pedobacter sp. BAL39] gi|149230159|gb|EDM35545.1| putative exported peptidase [Pedobacter sp. BAL39] Length = 1080 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 17/144 (11%) Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N L++ A SPD I F K +Y++ + G ++ + EA PVWSP G Sbjct: 22 NPLWMRYPA-ISPDGKNIAFGY----KGDIYLVSAAGGQATPLTIN-EAQDMMPVWSPDG 75 Query: 359 DLIAFTKFSGEKFAI-GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS- 416 +AF F + + G+ RL +N +SP G+ +IF ++ + Sbjct: 76 KTLAFASNRYGNFDVFSIPVAGGNPVRLTFNSANDYPYDFSPDGKEVIFGSARNSTAQNV 135 Query: 417 ---------KLYSIDLNGRNETLI 431 LYS+ LNG LI Sbjct: 136 RFASPRVFQNLYSVKLNGSRPHLI 159 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 36/224 (16%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI---GNFRSM 259 +R+L+ + D L FS N + + L+V +++ D K GN Sbjct: 266 VRHLSRANDNTLC---FSQNGEIYTFMENGTPTKLKVSILNDGRDNIVKTEPVNGNVTEF 322 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +L+P NGK + V + E I+ ++S T+++T T S +SPDS +++ Sbjct: 323 VLSP----NGKE-IAFVNRGE---IFVTGVESGQTKQITRTAAQERSVQWSPDSKSLIYA 374 Query: 320 SDR-----------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++R + K++ Y + + + + Q A F P++SP G IA+ + Sbjct: 375 TERNNSWDIYRSTIQQKDEPYFFAATVINTEPVIQ-TAAEEFQPLYSPDGKEIAYVE--- 430 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLI 405 + + V Q R L+ + + + + WSP + L+ Sbjct: 431 NRNILKVYNIKSKQTRTLLPEGHNHSYSDGDWSFAWSPDSKWLV 474 Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 20/139 (14%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKRALIS 275 P SP+ + +A+ D +YL+ +A P I + M+ P +S +GK + Sbjct: 29 PAISPDGKNIAFGYKGD-----IYLVSAAGGQATPLTINEAQDMM--PVWSPDGKTLAFA 81 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-------- 327 + D++S+ + RLT + +SPD +++F S R Q Sbjct: 82 SNRYGNFDVFSIPVAGGNPVRLTFNSANDYPYDFSPDGKEVIFGSARNSTAQNVRFASPR 141 Query: 328 ----LYVMQSNGSDQKRIS 342 LY ++ NGS IS Sbjct: 142 VFQNLYSVKLNGSRPHLIS 160 >gi|284028631|ref|YP_003378562.1| hypothetical protein Kfla_0642 [Kribbella flavida DSM 17836] gi|283807924|gb|ADB29763.1| conserved hypothetical protein [Kribbella flavida DSM 17836] Length = 285 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 17/151 (11%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EGKEQ 327 A I + + ++ +V ++T+ + A YS D I F S+R G Q Sbjct: 131 AYIGMDRRGITNVCTVPAAGGDDVQITDDAYAGDGAEYSADGRWIYFNSERAASVPGHAQ 190 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA---------IGVMKK 378 L+ + + G ++++ D+ ++F P +P G +A+ F I ++ Sbjct: 191 LFRVPAAGGVPEQLTDDERVNWF-PHPAPDGSAVAYVSFPPGTVGHPADVADVRIRLLTA 249 Query: 379 DGSQERLLV---EDSNLQAPTWSPSGRSLIF 406 DG + + P+WSP S + Sbjct: 250 DGGIREVATVFGGQGTMNVPSWSPDSNSFAY 280 >gi|291297932|ref|YP_003509210.1| WD40 domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290567152|gb|ADD40117.1| WD40 domain protein beta Propeller [Stackebrandtia nassauensis DSM 44728] Length = 309 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%) Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIG--VMKKDGSQERLLVEDSN 391 + K +++DK+ DP SP G + F F G+ K+ +M DGS ++ E Sbjct: 70 GEHKPLNKDKDIQAQDPSLSPDGRKVLFEGFHGDGGKYVNKKLIMNTDGSGLKIFGE--G 127 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + P WSP+G+ L + +D D + + S + +G +E I A AS+P W Sbjct: 128 ISTPVWSPNGKRLAY---RDTDRNTIMVS-NPDGTDEREIAEDA-ASNPVW 173 >gi|15805202|ref|NP_293889.1| acyl-peptide hydrolase [Deinococcus radiodurans R1] gi|6457834|gb|AAF09754.1|AE001879_2 acyl-peptide hydrolase, putative [Deinococcus radiodurans R1] Length = 655 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 352 PVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRK 409 P WSP G +AF + +GE K A+ ++ G + R + N + P WSP GR + F+ Sbjct: 83 PRWSPDGQNLAFVRSAGEVKAALMLLPLKGGEARRVTHFKNGVSGPQWSPDGRFIAFTTT 142 Query: 410 KD 411 D Sbjct: 143 AD 144 >gi|332140282|ref|YP_004426020.1| acylaminoacyl-peptidase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550304|gb|AEA97022.1| acylaminoacyl-peptidase [Alteromonas macleodii str. 'Deep ecotype'] Length = 685 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S +SPD S++ + S+ EGK QLYV + + Q + + +S + WSP G IAFT Sbjct: 97 SIRWSPDGSRLAYLSNEEGKPQLYVRWMD-TGQTALVTNVTSSPSNITWSPDGKYIAFT 154 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 13/102 (12%) Query: 265 FSSNGKRALISVQKDE-------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 F+ NG++ S + + DI+SVD+ N E+LT S SPD I Sbjct: 230 FAPNGEKIYFSANRSDNWEYEPVEADIFSVDMTGN-IEQLTQDKGRESSPVVSPDGKYIA 288 Query: 318 FESDREGK-----EQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + + K LYVM S+GS+Q+ I++D + S + W Sbjct: 289 YAYRDDEKVMYKNSYLYVMNSDGSEQRNITKDIDNSVSNFHW 330 >gi|212634248|ref|YP_002310773.1| peptidase S41 [Shewanella piezotolerans WP3] gi|212555732|gb|ACJ28186.1| Peptidase S41 [Shewanella piezotolerans WP3] Length = 1093 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++ DL + RLT+ + A+ SPD + + ++ EG ++YV+ +G KR+S Sbjct: 51 DLWTKDLTESKARRLTSLPAEELGATISPDGQSVAYVANYEGSSEVYVIAIDGGQAKRVS 110 >gi|219753666|emb|CAB60199.2| P100GA2 protein [Haemonchus contortus] Length = 825 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ V+ N ++LT+ N A SPD I F S R G +L+ M ++G++ ++ Sbjct: 558 FDIFMVNKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGTNLHQV 617 Query: 342 SQDKEASYFDPV-WSPQGDLIAF 363 + KE Y +SP G + F Sbjct: 618 T--KEYGYDGGCFFSPDGKRLVF 638 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 32/177 (18%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--- 322 S +GK+ + + ++ +D++ D+ +LT + AS+SPD +IVF + R Sbjct: 183 SPDGKKIVYTSKQSGDLDLWITDINGALKIQLTKKKGYDGGASFSPDGKKIVFHASRPKT 242 Query: 323 -----------------EGKEQLYVMQSN-----GSDQKRI-SQDKEASYFDPVWSPQGD 359 K +LYVM++N G+D+K + Q + + P + Sbjct: 243 NEEIAIYDRLLKNDLVATSKMELYVMEANTVCGKGTDEKPLFKQPRGGLDWTPYYHTDNK 302 Query: 360 LIAFT----KFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 I F+ ++ + ++ +DG+ ER+ + A P +S G+ +++S + Sbjct: 303 RIIFSSNMNSTKPNEYHLYIVNEDGTGLERVTFGNGYFNAFPVFSHDGKKVVWSSNR 359 >gi|332993975|gb|AEF04030.1| acylaminoacyl-peptidase [Alteromonas sp. SN2] Length = 692 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 38/191 (19%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMIL--- 261 TP++ + LF F P K A Y D+ + R KR GN + ++ Sbjct: 156 FTPTKAKPLFNLDFKPKGAKWAETPQYIDQTNFQ------RDGMGMKRPGNMQIYVVPTI 209 Query: 262 --APR--------------FSSNGKRALISVQ-KDEA------MDIYSVDLQSNATERLT 298 PR +S NG++ +IS DEA D++S+D++++ RLT Sbjct: 210 GGTPRQITSGEHDHAGTIAWSDNGQQIIISANTSDEADFDMLNSDLFSIDVKTSKVTRLT 269 Query: 299 NTLFINISASYSPDSSQIVFESDRE-GK----EQLYVMQSNGSDQKRISQDKEASYFDPV 353 + S SP+ ++I F + + GK LYVM S+G+ + ++ + + S Sbjct: 270 DMSGPERSPHLSPNGNKIAFVGNEDNGKSNQLSHLYVMNSDGTGIENLTSELDRSVGAIK 329 Query: 354 WSPQGDLIAFT 364 W+ G + F+ Sbjct: 330 WADNGKGVYFS 340 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 36/265 (13%) Query: 181 SESVVSGIIKNSLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 S +++ ++ +L + DG A++ L+ S++ F P FSP+ K+AY + E ++V Sbjct: 63 SMDIMTDSMRRNLWTIALDGSAHLPILSDSKNH--FNPVFSPDGAKMAYLS-SKEGKVQV 119 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLT 298 YL D + R+ + FS +GK A +A ++++D + + Sbjct: 120 YLKDL-ASNSTTRVTDVAMRPSGMSFSPDGKYLAFAMFTPTKAKPLFNLDFKPKGAKWAE 178 Query: 299 NTLFINISASYSPDSSQIVFESD-----REGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +I+ Q F+ D R G Q+YV+ + G ++I+ + Sbjct: 179 TPQYID----------QTNFQRDGMGMKRPGNMQIYVVPTIGGTPRQITSGEHDHAGTIA 228 Query: 354 WSPQGDLIA----------FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 WS G I F + + F+I V K RL ++P SP+G Sbjct: 229 WSDNGQQIIISANTSDEADFDMLNSDLFSIDV--KTSKVTRLTDMSGPERSPHLSPNGNK 286 Query: 404 LIFSRKKDGDTG---SKLYSIDLNG 425 + F +D S LY ++ +G Sbjct: 287 IAFVGNEDNGKSNQLSHLYVMNSDG 311 >gi|154493786|ref|ZP_02033106.1| hypothetical protein PARMER_03129 [Parabacteroides merdae ATCC 43184] gi|154086399|gb|EDN85444.1| hypothetical protein PARMER_03129 [Parabacteroides merdae ATCC 43184] Length = 1083 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S NG+ + + D IY+V +LT + +SPD S+I F SDR Sbjct: 29 PAISPNGETIAFTYKGD----IYTVPANGGKATQLTTHPAHDTRPIWSPDGSKIAFASDR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASY 349 G +++M G K+++ Y Sbjct: 85 NGNFDIFIMDMEGGSPKQLTTHSANEY 111 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Query: 351 DPVW------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP+W SP G+ IAFT + G+ + V G +L ++ P WSP G + Sbjct: 22 DPLWMRYPAISPNGETIAFT-YKGDIYT--VPANGGKATQLTTHPAHDTRPIWSPDGSKI 78 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 F+ ++G+ ++ +D+ G + + T + P+ Sbjct: 79 AFASDRNGNF--DIFIMDMEGGSPKQLTTHSANEYPE 113 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 14/138 (10%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SP+ I F K +Y + +NG +++ A P+WSP G IAF Sbjct: 32 SPNGETIAFTY----KGDIYTVPANGGKATQLTT-HPAHDTRPIWSPDGSKIAFASDRNG 86 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS---------KLYS 420 F I +M +G + L S + P + +++S D ++Y Sbjct: 87 NFDIFIMDMEGGSPKQLTTHSANEYPETFSDAKHILYSAAIQQDAKDSQFPSGQFPQIYR 146 Query: 421 IDLNGRNETLINTPAYAS 438 I +NG L ++ A S Sbjct: 147 IGINGGRPELYSSLAMES 164 >gi|227537270|ref|ZP_03967319.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242874|gb|EEI92889.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1025 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT-----ERLTNT-----LF 302 GN M ++P S +GK +KD ++D++ D + RLTN F Sbjct: 276 GNSGRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFSF 335 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA---SYFDPVWSPQGD 359 + + ++SPDS + F GK +L M + + K +S + + + W+ GD Sbjct: 336 LESAGTFSPDSRKFAFSVFSAGKNKL--MTVDVATGKTLSVEAMGDITEFTNITWAADGD 393 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFS 407 +AF+ I + + L D S+ Q P++S G+S++FS Sbjct: 394 HVAFSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQ-PSFSRDGKSIVFS 442 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 70/347 (20%) Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVL--VTGRVIKEGKDRLRVE----FRLW------- 131 ++FKQ++ P Q + LG +++ RV+ +G D R+E LW Sbjct: 99 EAFKQRVVMPVMQINQQTRHVLGHELVHAFQYRVLIDGGDSTRLENIMNLPLWMVEGMAE 158 Query: 132 ----------------------DVKDRKQIIGKKFFSSP-----ASWRKIAHTISDDIYQ 164 D+ KQ+ + + P A W I T D + Sbjct: 159 YFSIGKKDAFTSMWMRDAYLNKDIPSLKQMTEQSYKYFPYRYGQAFWSYIGSTYGDTVIM 218 Query: 165 SITGEKGDFN-----SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL----- 214 + E + R+ +S + KNS+ M ++ P IL Sbjct: 219 PLFIETAKYGYEIAMKRVFGYDAQTMSNLWKNSMENMYKNSGKDTVSRPVGTPILNTGNS 278 Query: 215 ----FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FRSMIL 261 P SP+ + VA+ + D + ++L D + +++G+ F + Sbjct: 279 GRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFSFLES 338 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNAT---ERLTN-TLFINISASYSPDSSQIV 317 A FS + ++ SV + +VD+ + T E + + T F NI +++ D + Sbjct: 339 AGTFSPDSRKFAFSVFSAGKNKLMTVDVATGKTLSVEAMGDITEFTNI--TWAADGDHVA 396 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 F + G +Y+ +++ D + F P +S G I F+ Sbjct: 397 FSGLKNGHSDIYIYNLKTKKLDQLTNDVYSD-FQPSFSRDGKSIVFS 442 Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 ++++G S K+ DIY +L++ ++LTN ++ + S+S D IVF +DR Sbjct: 388 WAADGDHVAFSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQPSFSRDGKSIVFSTDR 445 >gi|168184898|ref|ZP_02619562.1| putative lipoprotein [Clostridium botulinum Bf] gi|237795341|ref|YP_002862893.1| putative lipoprotein [Clostridium botulinum Ba4 str. 657] gi|182672040|gb|EDT84001.1| putative lipoprotein [Clostridium botulinum Bf] gi|229260763|gb|ACQ51796.1| putative lipoprotein [Clostridium botulinum Ba4 str. 657] Length = 357 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 20/164 (12%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVM 331 S+Q E M IY DL++ ++ + + ++ S + +I++ S++E K ++Y Sbjct: 139 SLQSAEGMKIY--DLENKKEIKIKSDVLVSGSLFKWLNEDEILYYGINSEKENKAKIY-- 194 Query: 332 QSNGSDQKRISQDKEASYFDPV------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++KE Y D + ++P GD I G+KF + K ++ + Sbjct: 195 ------KYNVKENKEEVYVDNIEGICTYFTPNGDDILLLSRHGDKFNLSYYNKKDNRFKK 248 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + E+ N Q + S +++ F K D + LY ID N N T Sbjct: 249 ISEEVN-QIYKGTKSTKNMYFLGKNDLENKDYLYKIDGNTLNLT 291 >gi|313205538|ref|YP_004044715.1| peptidase s41 [Riemerella anatipestifer DSM 15868] gi|312444854|gb|ADQ81209.1| peptidase S41 [Riemerella anatipestifer DSM 15868] gi|315023408|gb|EFT36418.1| putative Tricorn-like protease [Riemerella anatipestifer RA-YM] Length = 1079 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRI 341 DIY+V + + RLT + +SPD I F SDRE G +++++M S G + K++ Sbjct: 45 DIYAVSTEGGSAVRLTTHPAYDSDPVWSPDGKFIAFSSDRENGFQRIFIMPSQGGEAKQV 104 Query: 342 SQDKEAS 348 + +A+ Sbjct: 105 TFHSQAA 111 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F + +Y + + G R++ A DPVWSP G IAF+ Sbjct: 32 SPDGKKIAFTYMGD----IYAVSTEGGSAVRLTT-HPAYDSDPVWSPDGKFIAFSSDREN 86 Query: 370 KFA-IGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFS 407 F I +M G + + + S P +S G+++I+S Sbjct: 87 GFQRIFIMPSQGGEAKQVTFHSQAALPLAFSKDGKNIIYS 126 >gi|226312266|ref|YP_002772160.1| hypothetical protein BBR47_26790 [Brevibacillus brevis NBRC 100599] gi|226095214|dbj|BAH43656.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 599 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 6/142 (4%) Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEA 347 +SN +E++T + +SP ++ + D +G E Q +++ NG+ K ++ + Sbjct: 41 ESNRSEQVTFLPDRVVEVDHSPCGTKTIVGMDNKGDERQQFFLLTENGAVVKPLTDAPDY 100 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD---GSQERLLVEDSNLQAPTWSPSGRSL 404 ++ WSP IA++ + + +D G+ E + D W P GR L Sbjct: 101 FHYLGGWSPCRQKIAWSSNRRNPRSFDIFVQDVESGAYEEVFRYDGRTDPIGWLPDGRGL 160 Query: 405 IFSRKKDGDTGSKLYSIDLNGR 426 IFS ++ + + LY ++L + Sbjct: 161 IFS-VQETNIDNCLYLLNLQTK 181 >gi|50954559|ref|YP_061847.1| acylaminoacyl-peptidase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951041|gb|AAT88742.1| acylaminoacyl-peptidase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 675 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Query: 260 ILAPRFSSNGKRALISVQKD------EAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + AP G+RA++SV E ++++ L +A R F + +SP Sbjct: 12 VSAPAVHPGGERAVVSVTHPSLEADAEVGQLWTIPLAGHAAPRRLTRGFRDSVPRFSPAG 71 Query: 314 SQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F + QL+V+ + G + ++ D+ + VW+P G +AF E+ Sbjct: 72 RLLAFLRAGPNAPPQLHVVDAAGGEPVAVT-DRRLGVSEFVWAPDGRTLAFVSRQPEQGR 130 Query: 373 IGVMKKDG 380 G ++ G Sbjct: 131 YGTVEGIG 138 >gi|116670739|ref|YP_831672.1| peptidase S9 prolyl oligopeptidase [Arthrobacter sp. FB24] gi|116610848|gb|ABK03572.1| peptidase S9, prolyl oligopeptidase active site domain protein [Arthrobacter sp. FB24] Length = 701 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Query: 260 ILAPRFSSNGKRALISV-QKDEAMDIY-----SVDLQSNATERLTNTLFINISASYSPDS 313 + AP +G RA++SV + D D Y +V L R F + + ++SPD Sbjct: 27 VSAPAVHPDGSRAVVSVIRPDFDADTYVGQLWTVPLDPEKLPRRLTRGFRDTAPAFSPDG 86 Query: 314 SQIVF-ESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIAF 363 + F + +GK QLYV+++ G + + ++ K S F WSP I F Sbjct: 87 LVLAFLRATADGKPQLYVVEAAGGEPQVLTNAKLGVSSF--AWSPDSHSIVF 136 >gi|58584725|ref|YP_198298.1| hypothetical protein Wbm0468 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419041|gb|AAW71056.1| Predicted protein [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 68 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 MK D +ERLL E + P+ + + IF+ K + + SKLY +DL ++ +I+TP Sbjct: 1 MKSDDKEERLLSEK-HKSNPSMAVKWQRNIFT-KTESQSSSKLYLVDLAKKSHKIISTPT 58 Query: 436 YASDPQWVGF 445 A P W F Sbjct: 59 SAYLPDWSHF 68 >gi|319788383|ref|YP_004147858.1| peptidase S9B dipeptidylpeptidase IV domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317466895|gb|ADV28627.1| peptidase S9B dipeptidylpeptidase IV domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 800 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 8/150 (5%) Query: 264 RFSSNGKRALISVQKDEAMD--IYSVDLQS---NATERLTNTLFINISAS---YSPDSSQ 315 R+S +G+ + ++ + D I SVDL RLT+ +IN + + + PD+ Sbjct: 350 RWSDDGRNVAVMLRAIDNKDRWIASVDLDQARLQPRHRLTDPAWINWNFNEFGWLPDNQT 409 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F S+ G LY NG ++R S EAS P +G L + + + Sbjct: 410 LWFVSEESGYAHLYTQSGNGRPRQRTSGRWEASAPVPTADGRGLLFLCNRAWPGDYEVCA 469 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + Q R + ++ SP GR L+ Sbjct: 470 LDLGSDQVREVTALDGVEDFVLSPDGRQLL 499 >gi|268316730|ref|YP_003290449.1| WD40 domain-containing protein beta Propeller [Rhodothermus marinus DSM 4252] gi|262334264|gb|ACY48061.1| WD40 domain protein beta Propeller [Rhodothermus marinus DSM 4252] Length = 947 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S++G+ L + D +IY++++ S RLTN F + + SPD + F R Sbjct: 499 WSADGQWLLFTADPDSVPNIYALEVASGRVRRLTNVAFGALEPALSPDGRHLAFIHYRHE 558 Query: 325 KEQL 328 + +L Sbjct: 559 RYEL 562 >gi|332018511|gb|EGI59101.1| WD repeat-containing protein 23 [Acromyrmex echinatior] Length = 465 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ Q AY+++ D + + ++ D I+ P G R + + FS+NG+ ++ Sbjct: 151 FSPDGQHFAYSSWADC-LYQCHISDDSIETLPLHPGVRRFCVFSLAFSNNGEE-ILGGAN 208 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D + IYS+ Q + + +N Y+ +SSQI + +G +++ Sbjct: 209 DRCLYIYSLYCQRRFERFIGHEEDVN-CVGYADNSSQIFYSGGDDGLCKVW 258 >gi|262164636|ref|ZP_06032374.1| protease-related protein [Vibrio mimicus VM223] gi|262027016|gb|EEY45683.1| protease-related protein [Vibrio mimicus VM223] Length = 1085 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 23/137 (16%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD QI F Q++++ + G + +++ S PVWSP +AFT Sbjct: 48 SPDGKQIAFTY----AGQIWLVPAQGGEAIALTESGVYSE-APVWSPDSQSLAFT---AN 99 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDT----------- 414 ++ +G ++ G + R L P +S G+ L FS ++ GD Sbjct: 100 RYGMGDVFILAVQGGESRRLTYHGAKDTPYAFSADGKQLYFSSRRLGDEKANANVKQGGF 159 Query: 415 GSKLYSIDLNGRNETLI 431 ++LYS+ + G E L+ Sbjct: 160 TAQLYSVPVTGGREQLV 176 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 25/186 (13%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRI 341 D+Y V L S T+R+T+T + ++S D ++++ S+R G +Y N G Sbjct: 355 DVYVVSLLSGLTQRITDTPEAERNIAFSSDGFRLIYASERGGSWDIYQSYVNDGGKSFST 414 Query: 342 SQD--------KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 S D E P++SP IA+ + + + V + + L++D L Sbjct: 415 SLDIVEESVLTAEEDLIQPLYSPNNKRIAYRE---NRNTLKVYDIEQDKTFTLLDDQALY 471 Query: 394 -------APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDP 440 + WSP L+ + + +L D + L N+ P ++SD Sbjct: 472 SYFDSDLSYQWSPDSEYLVTRDRAAFNGDIQLLKFDSSEAPVNLSNSGFSEFDPQFSSDG 531 Query: 441 QWVGFM 446 QWV ++ Sbjct: 532 QWVYWL 537 >gi|332308770|ref|YP_004436620.1| transcriptional regulator domain-containing protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176099|gb|AEE25352.1| transcriptional regulator domain-containing protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 706 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%) Query: 219 FSPNQQKVAYATYD----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 FSP+ +++A + +ED+ L +++ G R + P NG R + Sbjct: 322 FSPDSKQLALSRSASDGMNEDLFLYDLNTQQMEYLVATKGRLRGLTWHP----NGDRIIY 377 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ + Y V L+ +T L F S+ P+S ++V+ S RE +L + + Sbjct: 378 GGEESGRRNGYLVSLKDKSTINLNVDGFS--YPSFVPNSHEVVYHS-RENITKLSTLDLS 434 Query: 335 GSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSN 391 + + ++Y DP +S + + I F I DGS + L + + Sbjct: 435 ETTGATLFPLIHSNYIYKDPHYSEENNSIVFISTESGYEEIWRADPDGSNRKQLTKLKRH 494 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 L +P WS +G+S+ F S L+ ++L N T +++ Sbjct: 495 LSSPRWSHNGQSIAFFAPDKKTKRSALFVLNLQEGNLTQLDS 536 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 L ++ +I YS +++ IVF S G E+++ +GS++K++++ K P WS Sbjct: 444 LIHSNYIYKDPHYSEENNSIVFISTESGYEEIWRADPDGSNRKQLTKLKR-HLSSPRWSH 502 Query: 357 QGDLIAFTKFSGEK----FAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 G IAF F+ +K A+ V+ ++G+ +L E P+W L+ K Sbjct: 503 NGQSIAF--FAPDKKTKRSALFVLNLQEGNLTQLDSEFDQYYRPSWLRDDSGLLAGAKFK 560 Query: 412 GDTGSKLYSID 422 G+ + ID Sbjct: 561 GNLALYGFPID 571 >gi|77361985|ref|YP_341559.1| putative peptidase [Pseudoalteromonas haloplanktis TAC125] gi|76876896|emb|CAI89113.1| putative peptidase [Pseudoalteromonas haloplanktis TAC125] Length = 672 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +I++VD ++ + LT+ + ++ S SPD S++ F S+R+G Q+Y+ +IS Sbjct: 64 NIWTVDYKTRQIQPLTSGVHMDHSPKLSPDGSRLAFISNRDGSNQIYMKWLKTGAVSKIS 123 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF 366 + ++ WSP +AF+ F Sbjct: 124 -NLTSTPKALSWSPDAKQLAFSMF 146 Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust. Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 82/260 (31%) Query: 239 VYLMDTRID-RAPKRIGNFRS----------------MILAPRFSSNGKRALISVQKDEA 281 VY + R+D + ++IGN + M +P+ S +G R +D + Sbjct: 47 VYFVRNRMDIKTDRKIGNIWTVDYKTRQIQPLTSGVHMDHSPKLSPDGSRLAFISNRDGS 106 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------------------- 319 IY L++ A +++N + S+SPD+ Q+ F Sbjct: 107 NQIYMKWLKTGAVSKISNLTSTPKALSWSPDAKQLAFSMFVATTSSSPISLPGKPEGATW 166 Query: 320 ------------------SDREGKEQLYVMQSNGSDQKRI-------------SQDKEAS 348 ++G EQL+++ +NG + K++ S+DK+A Sbjct: 167 AEPAKYIDDVYYRADGAGYAKKGFEQLFIIDANGGNAKQLTFDDFNNGGEVSFSKDKKAL 226 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIF 406 YF + + + + E + + ++ + E V D N + P SP+GR L + Sbjct: 227 YFS---ANRHNNYLLKPTNSEVYKLNLI----TLEVTAVTDRNGPDRQPQVSPNGRYLAY 279 Query: 407 SRKKDGDT---GSKLYSIDL 423 + D T ++LY DL Sbjct: 280 TGYDDKQTNYENTQLYIRDL 299 >gi|313675841|ref|YP_004053837.1| hypothetical protein [Marivirga tractuosa DSM 4126] gi|312942539|gb|ADR21729.1| WD40-like beta Propeller containing protein [Marivirga tractuosa DSM 4126] Length = 1082 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 239 VYLMDTRIDRAPKR----IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +YL D ++ KR M + P NGK A++S + D+Y + Sbjct: 376 LYLYDPYTNKFQKRDLRRFDQVNHMDIYP----NGKTAVLSANVNAQSDLYLISTGRPNI 431 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDRE 323 RLTN +F N+ S+ P + +IVF S+R+ Sbjct: 432 RRLTNDVFDNLYPSFIPSTKRIVFASNRK 460 >gi|119773893|ref|YP_926633.1| peptidase [Shewanella amazonensis SB2B] gi|119766393|gb|ABL98963.1| peptidase, putative [Shewanella amazonensis SB2B] Length = 688 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 113/294 (38%), Gaps = 72/294 (24%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-YDDEDILRVYLMDT------- 244 L + DRDG R +T + EP FSP+ +A+ + D +D ++YL+ Sbjct: 80 LWLFDRDGKKQRPIT-AEGLGASEPVFSPDSSTLAFVSKRDKDDAGQIYLLPMTGPGEAQ 138 Query: 245 RIDRAP------KRIGNFRSMI--LAP-----------------RFSSNGKRALISVQKD 279 R+ P K +G I + P + S+ AL Q D Sbjct: 139 RLTEVPTGVYGIKWVGKHLYFIANVWPQKSWDEMAEQIKADKDKKLSARQWNALPYSQFD 198 Query: 280 EAMD------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +D ++ + A E +T L + P SSQ + D + EQ S Sbjct: 199 HWLDEDRQAHVFRIAASGGAVEAITQPLGREL-----PRSSQSSADYDIDANEQYIAFTS 253 Query: 334 NGSDQK------------------RISQDKEASYFDPVWSPQGDLIAFTK-----FSGEK 370 NG D + ++ D +A P +SP GD +AF++ F + Sbjct: 254 NGWDNQVDPNIDLFLARIGGNQADNLTPDNKAPDDSPSFSPDGDTLAFSRQHIQGFYADT 313 Query: 371 FAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + D + + L + D +L + WS G+SL FS D T +LY ID Sbjct: 314 ARLMLYDMDSKKLQSLTDGWDRSLGSFVWSKDGKSL-FSNIDDAAT-QRLYQID 365 >gi|300772906|ref|ZP_07082775.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759077|gb|EFK55904.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 1025 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 15/168 (8%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT-----ERLTNT-----LF 302 GN M ++P S +GK +KD ++D++ D + RLTN F Sbjct: 276 GNSGRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFSF 335 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + + ++SPDS + F GK +L + + G + + + W+ GD + Sbjct: 336 LESAGTFSPDSRKFAFSVFSAGKNKLMTVDIATGKTLSVEAMGDITEFTNITWAADGDHV 395 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFS 407 AF+ I + + L D S+ Q P++S G+S++FS Sbjct: 396 AFSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQ-PSFSRDGKSIVFS 442 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 70/347 (20%) Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVL--VTGRVIKEGKDRLRVE----FRLW------- 131 ++FKQ++ P Q + LG +++ RV+ +G D R+E LW Sbjct: 99 EAFKQRVVMPVMQINQQTRHVLGHELVHAFQYRVLIDGGDSTRLENIMNLPLWMVEGMAE 158 Query: 132 ----------------------DVKDRKQIIGKKFFSSP-----ASWRKIAHTISDDIYQ 164 D+ KQ+ + + P A W I T D + Sbjct: 159 YFSIGKKDAFTSMWMRDAYLNKDIPSLKQMTEQSYKYFPYRYGQAFWSYIGSTYGDTVIM 218 Query: 165 SITGEKGDFN-----SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL----- 214 + E + R+ +S + KNS+ M ++ P IL Sbjct: 219 PLFIETAKYGYEIAMKRVFGYDAQTMSNLWKNSMENMYKNSGKDTVSRPVGTPILNTGNS 278 Query: 215 ----FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FRSMIL 261 P SP+ + VA+ + D + ++L D + +++G+ F + Sbjct: 279 GRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFSFLES 338 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNAT---ERLTN-TLFINISASYSPDSSQIV 317 A FS + ++ SV + +VD+ + T E + + T F NI +++ D + Sbjct: 339 AGTFSPDSRKFAFSVFSAGKNKLMTVDIATGKTLSVEAMGDITEFTNI--TWAADGDHVA 396 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 F + G +Y+ +++ D + F P +S G I F+ Sbjct: 397 FSGLKNGHSDIYIYNLKTKKLDQLTNDVYSD-FQPSFSRDGKSIVFS 442 Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 ++++G S K+ DIY +L++ ++LTN ++ + S+S D IVF +DR Sbjct: 388 WAADGDHVAFSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQPSFSRDGKSIVFSTDR 445 >gi|116625880|ref|YP_828036.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229042|gb|ABJ87751.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 501 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Query: 308 SYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++SPD + + F ++ +YV Q R++ D PV+SP G IAFT+ Sbjct: 348 AFSPDGNLLAFSWAGPNRDNYDIYVQQIGAGTPLRLTTDPGEDR-SPVFSPDGRYIAFTR 406 Query: 366 FSGEKFAIGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSLIFS-RKKDGDT-GSKLYSID 422 E+ I V G + +L LV +N+ +SP G+++ S R+ GD G L SI+ Sbjct: 407 --NERTLILVPALGGPERKLSLVGAANID---FSPDGKTIAISDRESAGDPLGLFLVSIE 461 Query: 423 LNGRNETLINTPAYASD 439 R P D Sbjct: 462 TGNRQRLTTAPPGIGGD 478 >gi|159030307|emb|CAO91202.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 170 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 14/114 (12%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-----QDKEASYFDPVWSPQGDLIA 362 SYS D + F SDR G+ +Y+ +KR+ ++S P + G LIA Sbjct: 51 SYSADGRYLAFASDRSGRRSIYLFD---LQEKRLVNLPNLNRGDSSQDQPSLNADGRLIA 107 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDG 412 + S E+ VM D S+ R + +NL+ PT S GR + F +DG Sbjct: 108 Y--ISSERGKSDVMVYDRSRSRTTLLTANLRGSVRNPTISGDGRQIAFETNQDG 159 >gi|313204200|ref|YP_004042857.1| wd40-like beta propeller containing protein [Paludibacter propionicigenes WB4] gi|312443516|gb|ADQ79872.1| WD40-like beta Propeller containing protein [Paludibacter propionicigenes WB4] Length = 694 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 11/87 (12%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLI 361 SPD +++++ ++ +G +L+VM ++GSD+K+I++ +EA+ W G I Sbjct: 59 SPDKTKVLYSVSYYSITENKGNSELFVMNTDGSDKKQITKTATREAA---AKWMKDGQHI 115 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE 388 AF + MK DGS+ + + + Sbjct: 116 AFLSSETGSMQLWTMKADGSERKQITD 142 >gi|289582194|ref|YP_003480660.1| peptidase S9 prolyl oligopeptidase active site domain protein [Natrialba magadii ATCC 43099] gi|289531747|gb|ADD06098.1| peptidase S9 prolyl oligopeptidase active site domain protein [Natrialba magadii ATCC 43099] Length = 611 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Query: 307 ASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 AS+SP+ +++F D G E QL+ + + + ++ +A + WS GD AFT Sbjct: 62 ASWSPERPELIFGMDEGGNERAQLFRLDAETGTIENVTAMPDAKHRWGGWSHDGDQFAFT 121 Query: 365 KFSGEKFAIGVMKKD----GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 ++ V +D G + L+ E D L WSP L+ S+ + LY Sbjct: 122 SNRRDEAVFDVYVQDRDETGDEAALVYEGDGWLSLSGWSPDDSRLLVSQAY-SNFDQDLY 180 Query: 420 SIDLNGRNETLINTPAYASD 439 +DL TL + + D Sbjct: 181 VLDLEAEKPTLEHLTPHEGD 200 >gi|298246851|ref|ZP_06970656.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297549510|gb|EFH83376.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 659 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 13/126 (10%) Query: 253 IGNFRSMILAPRFSSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINIS 306 I N S ++AP +GKRA V Q + ++ VD L+ + + Sbjct: 33 IRNVISAVIAP----DGKRAAFVVREWVPDQPRQRGRVWCVDTAGGDPYPLSTGALDDST 88 Query: 307 ASYSPDSSQIVF--ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+SPDS Q+ F +S E + L ++ + G + + I + WSP G IAF Sbjct: 89 PSWSPDSQQLAFISKSGHEDEALLCIVPAQGGESRTICAMPNG-ISEVNWSPDGSRIAFL 147 Query: 365 KFSGEK 370 G K Sbjct: 148 SHDGPK 153 >gi|88802849|ref|ZP_01118376.1| acylaminoacyl-peptidase [Polaribacter irgensii 23-P] gi|88781707|gb|EAR12885.1| acylaminoacyl-peptidase [Polaribacter irgensii 23-P] Length = 679 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 18/110 (16%) Query: 310 SPDSSQIVFESDREG--------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SPD+SQI++ R G + L+++ S+GS ++++ +E + WSP GD I Sbjct: 43 SPDASQIIYR--RNGFDIMKDTSRGNLWIINSDGSSNRKLTS-REVNESQAKWSPSGDRI 99 Query: 362 AF---TKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFS 407 AF TK E + V ++ +L + NL +WSP G + F+ Sbjct: 100 AFVSGTKEGSEVYMYWVQTGQIAKLSQLEMAPGNL---SWSPDGTQIAFT 146 >gi|294633938|ref|ZP_06712495.1| tat pathway signal sequence domain-containing protein [Streptomyces sp. e14] gi|292830190|gb|EFF88542.1| tat pathway signal sequence domain-containing protein [Streptomyces sp. e14] Length = 646 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 77/216 (35%) Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFI---------NISASYSPDSSQIVFE 319 K A +S + D I+ +DL++ A LT T + + S+SPD I F Sbjct: 144 KVAFVSTRSADRRTQIWLLDLRTKALTDLTGTAALAGDPAGPDGHFRPSWSPDGQWIAFS 203 Query: 320 SDRE----------GKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G E +YV++ +G+ ++++ P WSP G I F Sbjct: 204 SDRNTVWRGHGNGTGWEHTQELSIYVIRPDGTGFRQVASRDGYCQGSPKWSPDGSRIVFY 263 Query: 365 KFSGE-------------------------------------KFA--------IGVMKKD 379 + + E K A IG + K Sbjct: 264 ELTVEDTWGAHRPEDIGIAESQIVSVDVASGARTVHTSGPNLKVAPQYVSSTEIGYLVKG 323 Query: 380 GSQERLLVEDS-------NLQAPTWSPSGRSLIFSR 408 G E L +L++P W+P GRS+I+ + Sbjct: 324 GPDEGLAYVSGTLPSVKRSLRSPVWTPDGRSVIYEK 359 >gi|88803532|ref|ZP_01119057.1| MdsD protein, putative [Polaribacter irgensii 23-P] gi|88780544|gb|EAR11724.1| MdsD protein, putative [Polaribacter irgensii 23-P] Length = 1060 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 18/126 (14%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR--ISQDKEASYFDPVWSPQGDLIAFTK 365 S SPD+SQ+ F + ++V+ KR I Q E+ DP+W+ + + +AFT Sbjct: 29 SISPDASQMAFSYHGD----IWVLNFATDQTKRLTIHQGYES---DPIWNSKSNQLAFT- 80 Query: 366 FSGEKFAIGVMKKD---GSQERLLVEDSNLQAPTWSPSGRSLIFSRK---KDGDTGSKLY 419 S + ++ + K D G ++L S W+ +G S+IFS K + S +Y Sbjct: 81 -SNRRGSVNIFKTDLNGGIPDQLTYHPSGDMPSHWNANG-SIIFSSNRIFKGTERESSIY 138 Query: 420 SIDLNG 425 +ID NG Sbjct: 139 AIDENG 144 >gi|332306167|ref|YP_004434018.1| WD40-like beta Propeller containing protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173496|gb|AEE22750.1| WD40-like beta Propeller containing protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 692 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 57/231 (24%) Query: 271 RALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + +Q D+ +I+ VD ++ +TN L + S + SPD S++ + S G Q++ Sbjct: 60 RNFMDIQNDKKRGNIWKVD-KNKVMTPVTNGLHADYSPTLSPDESKLAYISTASGSAQIH 118 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---------------SGEKFA-- 372 + + ++++ A + WSP G ++AF++F G K+A Sbjct: 119 IKWLDSGQTGQMTRLTGAP-SNLSWSPDGKMLAFSQFVKGTPKSPVSLSGKPEGAKWADS 177 Query: 373 -----------------------IGVMKKDGSQERLLVEDSNLQAP--TWSPSGRSLIFS 407 I V+ +G R L + +WS +S++FS Sbjct: 178 AIFIDDLFYRADGAGYLPAGNSQIFVLSAEGGTPRQLTQGEFDHGGNISWSSDSKSIVFS 237 Query: 408 --RKKDGD---TGSKLYSIDLNGRNETLI-------NTPAYASDPQWVGFM 446 R KD D T LY ID+ N + N P+ + D + + ++ Sbjct: 238 ANRHKDSDLELTDDNLYKIDVATGNMLALTDRLGPDNGPSISPDGKLIAYL 288 >gi|219847169|ref|YP_002461602.1| hypothetical protein Cagg_0218 [Chloroflexus aggregans DSM 9485] gi|219541428|gb|ACL23166.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 414 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 7/149 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 P + +G R Q+ A + +DL + N E +T+ + +SPDS + F S+ Sbjct: 75 PALAPDGTRIAYIGQEGNASVLRVIDLTTGNRLELYRSTINPPLYIVWSPDSRSLSFLSN 134 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG--VMKKD 379 R L+++ ++GS + +S + W P + G F G V + Sbjct: 135 RARGLGLHIVPADGSRPAELVSSSTSSLYL-AWQPDSSSL-LVHIDGSLFEDGRVVTVQP 192 Query: 380 GSQERL--LVEDSNLQAPTWSPSGRSLIF 406 G Q+ L L + QAP WS G S + Sbjct: 193 GRQQPLYELNDPGFFQAPAWSVDGESFFY 221 >gi|198276608|ref|ZP_03209139.1| hypothetical protein BACPLE_02804 [Bacteroides plebeius DSM 17135] gi|198270133|gb|EDY94403.1| hypothetical protein BACPLE_02804 [Bacteroides plebeius DSM 17135] Length = 1083 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S SPD S I F K +Y + S G + ++++ + A P+WSP G IAF Sbjct: 28 CSISPDGSTIAFCY----KGDIYTVPSTGGNARQLTTNP-AYDTHPIWSPDGQQIAFASA 82 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 I ++ KDG + L S + P ++F Sbjct: 83 RQGSMDIYIVSKDGGVPKRLTTHSGNETPVTFSDATHILF 122 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY+V +LT + +SPD QI F S R+G +Y++ +G KR++ Sbjct: 44 DIYTVPSTGGNARQLTTNPAYDTHPIWSPDGQQIAFASARQGSMDIYIVSKDGGVPKRLT 103 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S NGK + D ++ + T+++T+T S ++PD IV+ S+R G Sbjct: 323 SPNGKEVAFILHGD----VFVTSTEYKTTKQITDTPEQERSIDFAPDGRSIVYASERNGL 378 Query: 326 EQLYVMQSNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAF 363 Q+Y ++K + + + F P +SP G IAF Sbjct: 379 WQIYQSTLTKEEEKLFTYATDIKEEQLTHSQVTSFQPQYSPDGKQIAF 426 >gi|154173809|ref|YP_001408804.1| translocation protein TolB [Campylobacter curvus 525.92] gi|112803726|gb|EAU01070.1| protein TolB [Campylobacter curvus 525.92] Length = 421 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 42/77 (54%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M++A S +G + L+++ + DIY ++ + ++TN I+++ ++ S+IVF Sbjct: 237 MLIASDVSKDGSKILLTMAPKDQPDIYIYNIATKGLTQITNYPGIDVNGNFVDGDSRIVF 296 Query: 319 ESDREGKEQLYVMQSNG 335 SDR G ++ +N Sbjct: 297 VSDRLGYPNVFATSANA 313 >gi|115376424|ref|ZP_01463660.1| dipeptidyl peptidase IV [Stigmatella aurantiaca DW4/3-1] gi|310823227|ref|YP_003955585.1| peptidase, s9b (dipeptidyl peptidase iv) subfamily [Stigmatella aurantiaca DW4/3-1] gi|115366556|gb|EAU65555.1| dipeptidyl peptidase IV [Stigmatella aurantiaca DW4/3-1] gi|309396299|gb|ADO73758.1| Peptidase, S9B (Dipeptidyl peptidase IV) subfamily [Stigmatella aurantiaca DW4/3-1] Length = 720 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 64/274 (23%), Positives = 102/274 (37%), Gaps = 39/274 (14%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F S L V + L ++R + L I +P+FSP+ ++VAY Sbjct: 107 GSFTSYALSRDGQKVLLTLSGKLYAVERGSGKVTQLNAGEGVI--DPQFSPDGKQVAYVR 164 Query: 231 YDDEDILRVYLM---DTRIDRA--PKRIGNFRSMILAP---RFSSNGKRALISVQKDEAM 282 D D+ RV L + +I R P+R ++ RF+ +A Sbjct: 165 --DNDVFRVELATNKERQITRGGTPERTHGLAELVAQEEMYRFTGY-------WWSPDAK 215 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE----QLYVMQSNGSDQ 338 I + ++ E+L N+ SP+ F R GK +L+V+ G Sbjct: 216 HIAYAEADTSGVEKL------NLVDPASPEQDAQPFAYPRPGKPNAKVRLFVVPVAGGPA 269 Query: 339 KRISQDKEA-SYFDPV-WSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVEDS---- 390 K + D E Y V WS G L + E+ + + G LLVE Sbjct: 270 KEVRWDAEKYPYMATVRWSKGGPLTLLVQNRAQTEEVLLAADPRTGQTRPLLVERDDAWL 329 Query: 391 --NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 N P W G ++S +++G + +L D Sbjct: 330 SLNQDFPEWLEDGSGFLWSTERNGASEVELRRAD 363 >gi|332829130|gb|EGK01794.1| hypothetical protein HMPREF9455_01942 [Dysgonomonas gadei ATCC BAA-286] Length = 1082 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DIY V ++T + +SPDS I F SDREG +Y++ + G +R++ Sbjct: 45 DIYKVSASGGRAMQITTHPGYDTRPVWSPDSKSIAFSSDREGSLDVYLVSAEGGAPQRLT 104 Query: 343 QDKEASY 349 Y Sbjct: 105 THSAGEY 111 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 24/221 (10%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILR-VYLMDTRIDRAPKRIGNFRSMILAPR 264 + PS +IL+ R + + + I R ++L D +R K++ FR P Sbjct: 167 IDPSGTKILYHDR---KGYEDPWRKHHQSSITRDLWLCDLSGERTYKKLTTFRGEDRNPV 223 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++++G+ ++ + +IY L + +LTN + S ++ F D E Sbjct: 224 WAADGQNFYYLSEQSGSFNIYKSGLNVSTPVKLTNLEKHPVRFLSSSKQGKLCFSYDGE- 282 Query: 325 KEQLYVMQSNGSDQK---RISQDKEASYF----------DPVWSPQGDLIAFTKFSGEKF 371 +Y M QK +I+ D + + + SP G +AF G+ F Sbjct: 283 ---IYTMNEGQQPQKVNIQIATDNQENKLKYINFSTGAREMAVSPSGKEVAFV-IRGDVF 338 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 V + G+ R+ + ++SP GRS++++ +++G Sbjct: 339 VASV--EYGTTRRITNTPEQERNVSFSPDGRSVLYAAERNG 377 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 17/115 (14%) Query: 265 FSSNGKRALISVQKDEAM-----DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 FS+ + +S E D++ ++ T R+TNT + S+SPD +++ Sbjct: 313 FSTGAREMAVSPSGKEVAFVIRGDVFVASVEYGTTRRITNTPEQERNVSFSPDGRSVLYA 372 Query: 320 SDREG-----------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++R G KE + + +++++ AS F P++SP G IA+ Sbjct: 373 AERNGLWNVYQSTLTHKEDESFVYAKDFKEEQLTNSTLAS-FQPLYSPDGKEIAY 426 >gi|113971218|ref|YP_735011.1| transcriptional regulator domain-containing protein [Shewanella sp. MR-4] gi|113885902|gb|ABI39954.1| transcriptional regulator domain protein [Shewanella sp. MR-4] Length = 716 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 12/184 (6%) Query: 265 FSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 FS +G+ I+ + + + DI+ DL S RLT+ L S++PDS +VF ++ Sbjct: 337 FSPDGRWLAIARRFSNISEDIFIRDLASANETRLTHGLEDIRGLSWTPDSQSLVFATEDS 396 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDG 380 G + + + + + D E + S +G+L+ +F F++G G Sbjct: 397 GSRNGFTIDIETAHIRPL--DVEGMSYPSSVSDEGELVYHQYRRQFQMAYFSLG-ESVPG 453 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRN-ETLINTPAYAS 438 S LL + + P +SP + ++F DTG +++++ D+NG+ E + + + Sbjct: 454 SLFPLLYSGISHRNPDYSPEAKRIVFV---SSDTGYNEIWTSDINGKKLEQHTHLKSRVA 510 Query: 439 DPQW 442 P+W Sbjct: 511 YPRW 514 >gi|333031177|ref|ZP_08459238.1| putative exported aminopeptidase [Bacteroides coprosuis DSM 18011] gi|332741774|gb|EGJ72256.1| putative exported aminopeptidase [Bacteroides coprosuis DSM 18011] Length = 694 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 18/166 (10%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFES-DREGKE 326 GK IS D IY DL++N T +T + + + YSPD I + S +R+G E Sbjct: 258 GKEYAISTNSD----IYVYDLKNNTTTNITEGMMGYDTNPQYSPDGKYISWLSMERDGYE 313 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKD 379 +L+VM +++ +S+D E++ D WS I F + + +AI V + Sbjct: 314 ADQNRLFVMDLASGEKRFMSKDFESNVDDYTWSSDSKSIYFIGVWHATSQMYAIDVEQAK 373 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 SQ + + T + G LI ++ + +++S+ L+G Sbjct: 374 VSQ----ITEGMHDYATIALCGEGLI-GKRHSLSSADEIFSVSLDG 414 >gi|298244050|ref|ZP_06967857.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297557104|gb|EFH90968.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 646 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 32/169 (18%) Query: 306 SASYSPDSSQIVFESDR--EGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIA 362 S + PD + + F SDR G QLY++ +NG + + ++ ++ + WSP G IA Sbjct: 68 SPQWEPDGNALAFLSDRVERGTAQLYLISANGGEAQALTPRENKRGVVLFAWSPGGGQIA 127 Query: 363 FT-------------------KFSGEKFAIGVMKKDGSQER----LLVEDSNLQAPTWSP 399 FT + GEK+ ++ R L+ + ++ W P Sbjct: 128 FTSVDEPDEEDERREKERDDAQVYGEKWPYARLRLLSLASREVSTLVAGERHVANFAWHP 187 Query: 400 SGRSLIFSRKKDGDTGSKLYS-----IDLNGRNETLINTPAY-ASDPQW 442 GR L ++ K + S + I L G ++ AY AS+ W Sbjct: 188 QGRELAYTTWKTPELNSSVQETVIERISLAGGEPQVVCHFAYGASNLTW 236 >gi|288918628|ref|ZP_06412977.1| serine/threonine protein kinase [Frankia sp. EUN1f] gi|288350028|gb|EFC84256.1| serine/threonine protein kinase [Frankia sp. EUN1f] Length = 725 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 15/174 (8%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 TI+DD S++ + G F ++ S + G+ L V DG+ + L + Q + Sbjct: 528 TIADDARPSLSPD-GKF---VVVRSTTNDQGLPDAGLYVARLDGSKVFRLNTA--QQATD 581 Query: 217 PRFSPNQQKVAYATYDDED-----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P +SP+ +++AY + E + + + K GN + P FS +G+R Sbjct: 582 PAWSPSGERIAYWASESESDRGFIVTILATSTSTPTPLTKGQGNRDA---DPTFSQDGQR 638 Query: 272 ALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S Q+ D ++IY ++ + R+T + +YSPD +VF +R G Sbjct: 639 IAFSRQETDGDLEIYQMNTDGSHVTRVTAEKGQDQDPAYSPDGKWLVFTGERGG 692 Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 65/206 (31%) Query: 264 RFSSNGKRALISVQKDEAMD---IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 R S + AL +V D + D +++ L +N T + + S SPD +V S Sbjct: 495 RKESETENALYAVAADGSKDPVKLFTSGLAANLT------IADDARPSLSPDGKFVVVRS 548 Query: 321 DREGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------- 363 + LYV + +GS R++ ++A+ DP WSP G+ IA+ Sbjct: 549 TTNDQGLPDAGLYVARLDGSKVFRLNTAQQAT--DPAWSPSGERIAYWASESESDRGFIV 606 Query: 364 -----------------------TKFS--GEKFAIGVMKKDGSQE------------RLL 386 FS G++ A + DG E R+ Sbjct: 607 TILATSTSTPTPLTKGQGNRDADPTFSQDGQRIAFSRQETDGDLEIYQMNTDGSHVTRVT 666 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDG 412 E Q P +SP G+ L+F+ ++ G Sbjct: 667 AEKGQDQDPAYSPDGKWLVFTGERGG 692 >gi|328880701|emb|CCA53940.1| peptidase S9, prolyl oligopeptidase [Streptomyces venezuelae ATCC 10712] Length = 688 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S P Q+ F DR+G QL+ GSD + + WSP G+ IA+T Sbjct: 56 SPDPRGEQVAFICDRDGAPQLWA-GPVGSDDAHLLDTGPDHVTEVSWSPSGEWIAYTVAP 114 Query: 368 GEKFAIGVM--KKDGSQERLLV 387 G V+ + DGS R+L Sbjct: 115 GGSGHTRVLCVRPDGSDRRVLA 136 >gi|256393088|ref|YP_003114652.1| WD40 domain-containing protein beta Propeller [Catenulispora acidiphila DSM 44928] gi|256359314|gb|ACU72811.1| WD40 domain protein beta Propeller [Catenulispora acidiphila DSM 44928] Length = 647 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 27/132 (20%) Query: 310 SPDSSQIVFESDREGKE--QLYV--------MQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD +++ F S R Q++V G+ + + +F P WSP Sbjct: 137 SPDGTKLAFMSTRSADHLAQIWVKNLKSEALTNLTGTAALKGGSNSPDGHFRPAWSPDSQ 196 Query: 360 LIAF-----TKFSG----------EKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGR 402 IAF T ++G ++ +I ++K DG+ R + L +P+WSP G Sbjct: 197 WIAFSSDRNTAWTGHGNGTGWEHTQELSIYIIKADGTGFRQVATKPGYCLGSPSWSPDGT 256 Query: 403 SLIFSRKKDGDT 414 +++ + DT Sbjct: 257 RIVYYQLTREDT 268 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 25/125 (20%) Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFI---------NISASYSPDSSQIVFE 319 K A +S + D I+ +L+S A LT T + + ++SPDS I F Sbjct: 142 KLAFMSTRSADHLAQIWVKNLKSEALTNLTGTAALKGGSNSPDGHFRPAWSPDSQWIAFS 201 Query: 320 SDRE----------GKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G E +Y+++++G+ ++++ P WSP G I + Sbjct: 202 SDRNTAWTGHGNGTGWEHTQELSIYIIKADGTGFRQVATKPGYCLGSPSWSPDGTRIVYY 261 Query: 365 KFSGE 369 + + E Sbjct: 262 QLTRE 266 >gi|262194673|ref|YP_003265882.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078020|gb|ACY13989.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1626 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 14/222 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E +VS I S+ + + DG+ + + + FSP+ +V A+YD +RV+ Sbjct: 1344 ERIVSASIDKSMRIWNADGSGQPLILRGHEDRVSSAGFSPDGDRVVSASYD--KTVRVWN 1401 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D + R G++ + + + S +G R L S D+++ I+++D S L Sbjct: 1402 ADGSGEAMVLR-GHY-DRVTSAQVSPDGARVL-SASWDKSIRIWNID-GSGRPAILRGHH 1457 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SA +SPD +IV S + + V +++GS+ + + E +SP G I Sbjct: 1458 DAVWSARFSPDGERIVSAS---FDKSVRVWRTDGSEPPIVLRGHEDWVMWAEFSPDGRYI 1514 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSG 401 S +K I + + DGS E +++ D+ + +SP G Sbjct: 1515 --VSASKDK-TIRIWRSDGSGEPVVLRGHDAWVNKARFSPDG 1553 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 107/265 (40%), Gaps = 54/265 (20%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +VS +L + + DG+ ++ P + + RFSP+ + A++D +R++ D Sbjct: 1136 IVSASWDTTLRLWNSDGSGHPHVFPGHEDQVTSARFSPDGAHIVSASHD--GTMRLWRSD 1193 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD---------LQSNAT 294 + P S + + RFS +G LIS D+++ ++ D + Sbjct: 1194 GTGE--PVVFRGHDSGLTSARFSPDGVH-LISASTDQSVRVWRADGSRPPQVLRGHDDVV 1250 Query: 295 ERLT----NTLFINIS----------------------------ASYSPDSSQIVFESDR 322 E + F++ S AS+SPD +++V S Sbjct: 1251 ESVALSPDGGYFVSASWDGSIRMWPLAGSGQPLLLDGHTREALSASFSPDGTRLVSSS-- 1308 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + L V +NGS Q + + EA+ + +SP G+ I ++ + DGS Sbjct: 1309 -WDKDLRVHSANGSGQPLVLRGHEAAVWHAEFSPSGERIVSASIDK---SMRIWNADGSG 1364 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLI 405 + L++ + + + +SP G ++ Sbjct: 1365 QPLILRGHEDRVSSAGFSPDGDRVV 1389 >gi|305665004|ref|YP_003861291.1| protease [Maribacter sp. HTCC2170] gi|88707416|gb|EAQ99661.1| protease, putative [Maribacter sp. HTCC2170] Length = 1081 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 12/148 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNAT---ERLTNT-LFINISASYSPDSSQIVFES 320 FSS+GK+ + DE+ + V + SN E +TN + + SPD + ++ Sbjct: 359 FSSDGKK--VYTLSDESGEFEFVSMPSNGVGSHEAITNNGKVLRYAGKPSPDGKWLAYD- 415 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK--K 378 D G ++V+ K+IS KE + WSP IAF + + A + Sbjct: 416 DLMG--NMFVLNIATGSSKKIST-KEEGIYSFSWSPDSKWIAFVQVADNTMAQIYLYGLS 472 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIF 406 G+ + + +N P WSP G+ + F Sbjct: 473 SGASFPITTDRANSNYPAWSPDGKFIYF 500 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI++V L +LT + SPD I F + EG ++Y M +G R + Sbjct: 51 DIWTVPLSGGLAYKLTTHAEEERYPAISPDGKMIAFSASYEGPTEIYSMPIDGGLPIRWT 110 Query: 343 QDKEASYFDPVWSPQGDLI----AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 + + S + W+P G ++ AF + +K +++++ V S ++ Sbjct: 111 YESDFSRTNG-WTPDGKIVYDTRAFATLPDRQLVTIDIK---TKKKVRVPLSQASEASFD 166 Query: 399 PSGRSLIFSRKKDGDTGSKLY 419 SG ++ F R D +K Y Sbjct: 167 ASGNTVFFVRPSDHGNVTKRY 187 >gi|255089254|ref|XP_002506549.1| predicted protein [Micromonas sp. RCC299] gi|226521821|gb|ACO67807.1| predicted protein [Micromonas sp. RCC299] Length = 910 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 11/109 (10%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLT-----PSRDQILFEPR-----FSPNQQKVAYATYDD 233 +V G + + V+DR G +R T P D L R + + A+A YDD Sbjct: 80 IVLGTKRGVVIVLDRGGNELRRFTDAHRAPVNDVCLDARREWVGSCADDGTCAAHALYDD 139 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +D TR+ R G RS+ L PRFSS G R + D ++ Sbjct: 140 DDA-HASSASTRVVRCEHDAGPVRSIALDPRFSSRGTRRFVRGGDDGSL 187 >gi|88812601|ref|ZP_01127849.1| WD40-like Beta Propeller [Nitrococcus mobilis Nb-231] gi|88790195|gb|EAR21314.1| WD40-like Beta Propeller [Nitrococcus mobilis Nb-231] Length = 358 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 33/170 (19%) Query: 304 NISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N A +S D ++++F+S R+G+ + +Y M + G + +R+S K A+ + +P G I Sbjct: 57 NAEAYFSFDGTELIFQSTRDGRACDAIYRMDTEGHNVRRVSSGKGATTCSFI-APNGRSI 115 Query: 362 AF--TKFSGEK------------------FAIGVMKKDGSQERLLVEDSNLQAP-TWSPS 400 + T +GE+ + I +G L + A +SP Sbjct: 116 IYASTHLAGERCPTKPDRSQGYVWPLYPGYDIFRAGPEGENPARLTDTPGYDAEGVYSPL 175 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAY------ASDPQWV 443 G ++F+ + GD +L+ ++ +G E L + P Y + D QW+ Sbjct: 176 GDKIVFTSMRTGDL--ELFMMNPDGSTVEQLTDEPGYDGGAFFSRDGQWL 223 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 52/279 (18%), Positives = 106/279 (37%), Gaps = 50/279 (17%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIR------------YLTPSRDQILFE---------P 217 + +S G +++ MD +G N+R ++ P+ I++ P Sbjct: 69 LIFQSTRDGRACDAIYRMDTEGHNVRRVSSGKGATTCSFIAPNGRSIIYASTHLAGERCP 128 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 Q + Y DI R P R+ + +S G + + + Sbjct: 129 TKPDRSQGYVWPLYPGYDIFRA----GPEGENPARLTDTPGYDAEGVYSPLGDKIVFTSM 184 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-------------- 323 + ++++ ++ + E+LT+ + A +S D +V+ + R Sbjct: 185 RTGDLELFMMNPDGSTVEQLTDEPGYDGGAFFSRDGQWLVWRASRPQDKALEDYRRLLRQ 244 Query: 324 -----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIG 374 G+ ++Y+M N +++ D A+ F P W P G I F+ SG F + Sbjct: 245 GLVRPGRLEIYIMNLNERQPIQLT-DNGAANFAPYWHPDGQHIVFSSNMHDPSGRNFDLY 303 Query: 375 VMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 +M + + E+L P +S G+ L+F+ ++G Sbjct: 304 LMDVETRALEQLTYYPGFDGFPMFSHDGKKLVFASNRNG 342 >gi|332884026|gb|EGK04306.1| hypothetical protein HMPREF9456_01334 [Dysgonomonas mossii DSM 22836] Length = 698 Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 12/143 (8%) Query: 310 SPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD S+I++ E ++ KE L+ M +GSD+K+I+Q ++ + +W G IA Sbjct: 63 SPDRSKILYGVTYVSIEQNKTNKE-LFTMNVDGSDKKQITQTPKSEN-NAIWVKGGSKIA 120 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK-KDGDTGSKLYS 420 F I M DGS + + + + ++SP G+ +++ + K G+ + Y Sbjct: 121 FLSSESGSSQIWEMNPDGSGRKQISNIEGGVNGFSYSPDGKRIMYIKNIKFGERTTDRYK 180 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 DL + +I+ Y +W+ Sbjct: 181 -DLPKASGRIIDDLMYKHWSEWI 202 >gi|320161707|ref|YP_004174932.1| hypothetical protein ANT_23060 [Anaerolinea thermophila UNI-1] gi|319995561|dbj|BAJ64332.1| hypothetical protein ANT_23060 [Anaerolinea thermophila UNI-1] Length = 451 Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/201 (18%), Positives = 94/201 (46%), Gaps = 27/201 (13%) Query: 266 SSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVF----- 318 + +G+ + S D+ MD++ V + ++ + ++ ++ P + + + Sbjct: 167 APDGETLVYSAYNDQQGMDLWQVRRDGSENRKILDCGADWCLNPAFHPQGTWLAYSRRLA 226 Query: 319 ---ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEKFAIG 374 + + G +++++ + + IS D S +P+W+P G L+ + SG + Sbjct: 227 PIQQGAQPGVPRVWLLDLTSNTTQPISPDPNVSGSEPLWAPVGRRLLMWDGLSGGLRGVD 286 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT--GSKLYSIDLNGRN-ETLI 431 + + Q ++ D + A TW+P+G++++F+R G+T +++Y D + + E ++ Sbjct: 287 L---EAQQSIVIPSDMGMSA-TWTPNGKAILFTRMVLGETVAYAEVYRYDWDTQTIERVL 342 Query: 432 NT---------PAYASDPQWV 443 + P ++ D QW+ Sbjct: 343 GSSEMPRDYSVPVFSPDGQWM 363 >gi|256396381|ref|YP_003117945.1| cell wall binding repeat 2-containing protein [Catenulispora acidiphila DSM 44928] gi|256362607|gb|ACU76104.1| putative cell wall binding repeat 2-containing protein [Catenulispora acidiphila DSM 44928] Length = 624 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-ES 320 AP+ +NG + + + A +++ + +NA R+ NT S SP+ I + Sbjct: 155 APQGGANGSM-VFQRKTNGATWVWTYNGYTNAAARVANT-NAGTQPSISPNGRTIAYIHE 212 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAF 363 D G Q++ + +GS+ +++ D + + PVWS G LIAF Sbjct: 213 DLNGLPQVFTVGVDGSNPTQLTTDAKPLQKNDTPVWSSDGSLIAF 257 >gi|218921784|emb|CAW30773.1| P100-GA [Haemonchus contortus] Length = 746 Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ V N ++LT+ N A SPD I F S R G +L+ M ++G++ ++ Sbjct: 535 FDIFMVSKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGTNLHQV 594 Query: 342 SQDKEASYFDPV-WSPQGDLIAF 363 + KE Y +SP G + F Sbjct: 595 T--KEYGYDGGCFFSPDGKRLVF 615 >gi|298243303|ref|ZP_06967110.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297556357|gb|EFH90221.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 650 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 309 YSPDSSQIVF----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +SPD + F E +RE K QLY++ + G +R+ D WSP +AFT Sbjct: 94 WSPDGRWLAFVGVAEGERE-KSQLYLVDAQGGTPRRVCTMPNG-ILDLEWSPDACCLAFT 151 Query: 365 KFSGEK 370 F GE+ Sbjct: 152 SFEGEE 157 >gi|284163411|ref|YP_003401690.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haloterrigena turkmenica DSM 5511] gi|284013066|gb|ADB59017.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haloterrigena turkmenica DSM 5511] Length = 726 Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 258 SMILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + PR S + +R + + A IY+V + + + T + ++ +SPD Sbjct: 35 THVEEPRLSPSDERVAFVRRTPAADESYAASIYTVPVGGDEAAQFTASDGVDSQPRWSPD 94 Query: 313 SSQIVFESDR-EG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++ F S R EG +EQ++++ ++G + +R++ D WSP G + F++ Sbjct: 95 GDRLAFASTRGEGDREQVWLVPTDGGEARRLTS-VVGGIDDLEWSPNGSRLLFSQ 148 Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 352 PVWSPQGDLIAF--TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR 408 P WSP GD +AF T+ G++ + ++ DG + R L + WSP+G L+FS+ Sbjct: 89 PRWSPDGDRLAFASTRGEGDREQVWLVPTDGGEARRLTSVVGGIDDLEWSPNGSRLLFSQ 148 Query: 409 K 409 + Sbjct: 149 R 149 >gi|254881548|ref|ZP_05254258.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642932|ref|ZP_07997568.1| exported peptidase [Bacteroides sp. 3_1_40A] gi|254834341|gb|EET14650.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317385480|gb|EFV66423.1| exported peptidase [Bacteroides sp. 3_1_40A] Length = 1086 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+++TNT +SPD IV+ S+R G Q+Y ++K+ + Sbjct: 336 DVYVTSTEYSTTKQITNTPQQERDIHFSPDGRSIVYASERNGLWQIYQTSLAKKEEKQFA 395 Query: 343 ----------QDKEASYFDPVWSPQGDLIAF 363 + + + F P +SP G +AF Sbjct: 396 YATDIKEERLTNSDITSFQPQYSPDGKEVAF 426 >gi|237712301|ref|ZP_04542782.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229453622|gb|EEO59343.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1086 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+++TNT +SPD IV+ S+R G Q+Y ++K+ + Sbjct: 336 DVYVTSTEYSTTKQITNTPQQERDIHFSPDGRSIVYASERNGLWQIYQTSLAKKEEKQFA 395 Query: 343 ----------QDKEASYFDPVWSPQGDLIAF 363 + + + F P +SP G +AF Sbjct: 396 YATNIKEERLTNSDITSFQPQYSPDGKEVAF 426 >gi|237726440|ref|ZP_04556921.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434966|gb|EEO45043.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 1086 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+++TNT +SPD IV+ S+R G Q+Y ++K+ + Sbjct: 336 DVYVTSTEYSTTKQITNTPQQERDIHFSPDGRSIVYASERNGLWQIYQTSLAKKEEKQFA 395 Query: 343 ----------QDKEASYFDPVWSPQGDLIAF 363 + + + F P +SP G +AF Sbjct: 396 YATDIKEERLTNSDITSFQPQYSPDGKEVAF 426 >gi|265752010|ref|ZP_06087803.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236802|gb|EEZ22272.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1086 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+++TNT +SPD IV+ S+R G Q+Y ++K+ + Sbjct: 336 DVYVTSTEYSTTKQITNTPQQERDIHFSPDGRSIVYASERNGLWQIYQTSLAKKEEKQFA 395 Query: 343 ----------QDKEASYFDPVWSPQGDLIAF 363 + + + F P +SP G +AF Sbjct: 396 YATDIKEERLTNSDITSFQPQYSPDGKEVAF 426 >gi|157376544|ref|YP_001475144.1| peptidase S9 prolyl oligopeptidase [Shewanella sediminis HAW-EB3] gi|157318918|gb|ABV38016.1| peptidase S9, prolyl oligopeptidase active site domain protein [Shewanella sediminis HAW-EB3] Length = 690 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 373 IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLY--SIDLNGRNET 429 + + KDGS +R + + L P +SP ++L F K+D D ++Y +D G + Sbjct: 82 LWLFAKDGSNQRPITAEGLLVSEPVFSPDSKTLAFVSKRDKDEAGQVYLLPMDSPGEAQR 141 Query: 430 LINTPAYASDPQWVG 444 L N P +WVG Sbjct: 142 LTNVPGGVKGVKWVG 156 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 24/233 (10%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPK 251 L + +DG+N R +T + ++ EP FSP+ + +A+ + D+D +VYL+ + Sbjct: 82 LWLFAKDGSNQRPIT-AEGLLVSEPVFSPDSKTLAFVSKRDKDEAGQVYLLPMDSPGEAQ 140 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT----NTL-FINIS 306 R+ N + ++ + V + D + L++N ++++ N L + + Sbjct: 141 RLTNVPGGVKGVKWVGEHVYFISRVFPGKNWDEMAEQLRANEDDKVSARQWNALPYSSFD 200 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 D VF +G E + Q R SQ A+ +D S LIAF Sbjct: 201 HWIEEDRQAHVFRIPAKGGEVEAITQPMNKQLPRSSQ--SAANYDI--SADERLIAFNSN 256 Query: 367 SGEK----------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 E IG K + ++ D+N PT+SP G++L F+R+ Sbjct: 257 GWENQVDPKVDIFMAKIGSDKVENLTQKNEAPDTN---PTFSPDGKTLAFTRQ 306 >gi|83858949|ref|ZP_00952471.1| dipeptidyl peptidase IV [Oceanicaulis alexandrii HTCC2633] gi|83853772|gb|EAP91624.1| dipeptidyl peptidase IV [Oceanicaulis alexandrii HTCC2633] Length = 748 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 43/186 (23%) Query: 218 RFSPNQQKVAYATYDDED--ILRVYLMDTRIDRAPKRIGNFRSMILAP------------ 263 RFSP+ ++V + D+D + ++ MD R + S +LAP Sbjct: 54 RFSPDGERVTFLRPKDDDRTVTDLWAMDLSDGRTYMLV---DSAVLAPDERELSEAEIQY 110 Query: 264 ----RFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLTNTLFINISASYSPDS 313 R S++G + + EA+ D++ VD+ + ERL T A SPD Sbjct: 111 RERARISTSGVVSYDWDETGEAILVPLDGDVFYVDVNTGEAERLMQTEAFETDARVSPDG 170 Query: 314 SQIVFESDRE--------GKEQLYVMQSNGSD------QKRISQDKEASYFDPVWSPQGD 359 S + F D+ G+E+ + + G D + ++Q++ + Y WSP G Sbjct: 171 SYVSFIRDQNLWVHDLETGEER--ALTTEGGDAISWGVAEFVAQEEMSRYTGYWWSPDGR 228 Query: 360 LIAFTK 365 IA + Sbjct: 229 YIAAAR 234 >gi|262403192|ref|ZP_06079752.1| protease-related protein [Vibrio sp. RC586] gi|262350691|gb|EEY99824.1| protease-related protein [Vibrio sp. RC586] Length = 1084 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 31/186 (16%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRI 341 D+Y V L S T+R+T+T S+S D ++V+ S+REG LY N G Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDISFSSDGYRLVYASEREGSWNLYQSYVNDGGKSFST 413 Query: 342 SQD--------KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 S D E+ P++SP IA+ + + + V + Q L+++ L Sbjct: 414 SLDIVEEPLLITESDVIQPLYSPNHKRIAYRE---NRNTLKVYDIEQDQTYTLLDEHALY 470 Query: 394 APT-------WSPSGRSLIFSRKK--DGDT------GSKL-YSIDLNGRNETLINTPAYA 437 + WSP L+ + +GD GS++ ++ +G E + P ++ Sbjct: 471 SYVDADLSYQWSPDSEYLVTRDRAMFNGDIQLLKFDGSEVPLNLSQSGFAEFM---PQFS 527 Query: 438 SDPQWV 443 +D QWV Sbjct: 528 ADGQWV 533 >gi|212691269|ref|ZP_03299397.1| hypothetical protein BACDOR_00760 [Bacteroides dorei DSM 17855] gi|212666501|gb|EEB27073.1| hypothetical protein BACDOR_00760 [Bacteroides dorei DSM 17855] Length = 1086 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+++TNT +SPD IV+ S+R G Q+Y ++K+ + Sbjct: 336 DVYVTSTEYSTTKQITNTPQQERDIHFSPDGRSIVYASERNGLWQIYQTSLAKKEEKQFA 395 Query: 343 ----------QDKEASYFDPVWSPQGDLIAF 363 + + + F P +SP G +AF Sbjct: 396 YATDIKEERLTNSDITSFQPQYSPDGKEVAF 426 >gi|56459628|ref|YP_154909.1| acylaminoacyl-peptidase [Idiomarina loihiensis L2TR] gi|56178638|gb|AAV81360.1| Acylaminoacyl-peptidase [Idiomarina loihiensis L2TR] Length = 671 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 33/201 (16%) Query: 249 APKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 APK I GN+R + G KD IY + + +LT+ F + Sbjct: 167 APKYIDKGNYR-------YDGGG------YAKDGHQQIYVIPATGGSPRQLTDEEFNHGG 213 Query: 307 A-SYSPDSSQIVFESDREG-------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 S+SPDS I F ++R ++Y + + + I++ ++ P SP G Sbjct: 214 QLSWSPDSKHIFFSANRRDDAFRQPVNSEIYRLTLSTKEITAITE-RDGPDGSPKVSPNG 272 Query: 359 DLIAFTKFSGEKFA-----IGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKD 411 + IAFT + K + + VM DGS LL D ++ W + F+ + Sbjct: 273 EKIAFTGYDDTKMSFQASNLYVMDLDGSDVELLTGDLDHSVTGFEWDRDSEGVYFTYDNN 332 Query: 412 GDTGSKLYSIDLNGRNETLIN 432 G +L DL+G + L N Sbjct: 333 GV--GQLARTDLDGDHTQLTN 351 >gi|77360885|ref|YP_340460.1| peptidase [Pseudoalteromonas haloplanktis TAC125] gi|76875796|emb|CAI87017.1| putative peptidase [Pseudoalteromonas haloplanktis TAC125] Length = 646 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I+ FS +G + L+S + +Y V++Q+ RLT+ Y P+ +++F Sbjct: 58 IMGSSFSPHGDKILVSSDESGIYSLYEVNVQTGGKTRLTDFTDSTYPIRYFPNDERVLFT 117 Query: 320 SDREGKE--QLYVMQSNGS 336 D G E +YV +++G+ Sbjct: 118 KDTGGNERFHIYVRETDGT 136 >gi|159897319|ref|YP_001543566.1| hypothetical protein Haur_0790 [Herpetosiphon aurantiacus ATCC 23779] gi|159890358|gb|ABX03438.1| hypothetical protein Haur_0790 [Herpetosiphon aurantiacus ATCC 23779] Length = 343 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 34/211 (16%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA--SYS 310 G S + P + K IS+ D++ DL + +LTN S S + Sbjct: 16 CGAANSATVTPPAAVAPKLGDISLIISRGGDLWRFDLPAKQWTQLTNEAPNAYSTFPSIA 75 Query: 311 PDSSQIVF----ESDREGKEQLYVMQSNGSDQKRISQDKEASYF---------------- 350 PD +V+ EQ +V+ N ++Q + S F Sbjct: 76 PDGKSVVYSYRPPVPTPSAEQPFVVPVNHANQIAVDGGASKSLFVPDGGKRDGLQIYDSL 135 Query: 351 -DPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQA--------PTWSPS 400 PVWSP G + + + +F GV + GS + S +Q P+ SP Sbjct: 136 DTPVWSPDGKTL-YGVYQTLRFDNDGVFLQSGSSIVAIDLASGVQQTLVMTGTFPSVSPD 194 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 GR L F R +DG LY DL + E ++ Sbjct: 195 GRQLAFVRTRDG-IYPTLYLYDLQTKQERVL 224 >gi|313125049|ref|YP_004035313.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halogeometricum borinquense DSM 11551] gi|312291414|gb|ADQ65874.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halogeometricum borinquense DSM 11551] Length = 719 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF----ESDREGKEQ-LYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD +++ F D E EQ +YV+ + G SD +R++ E P WSP GD +AF Sbjct: 21 SPDGTRVAFVRKEPKDDESYEQTIYVVPAAGDSDPRRLTI-AEGVDSQPRWSPSGDRLAF 79 Query: 364 TKFSG---EKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR 408 G ++ + V+ DG + E++ + WSP G + F + Sbjct: 80 VSTRGADDDRPQLWVLPMDGGEAEQVTDVPGGVSGIEWSPDGTRIAFQQ 128 >gi|308188759|ref|YP_003932890.1| hypothetical protein Pvag_3303 [Pantoea vagans C9-1] gi|308059269|gb|ADO11441.1| Uncharacterized protein yidR [Pantoea vagans C9-1] Length = 419 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 11/125 (8%) Query: 296 RLTNTLFINISASY----SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 RLT++ + + + +PD SQI F +D QL+ + NG + ++I++ + Sbjct: 286 RLTHSRGVALQPRHWLRTAPDGSQIAFLMADAGAVIQLWTVSPNGGEPRQITELSHSIQS 345 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL---VEDSNLQAPTWSPSGRSLIFS 407 W P G IAF + + + G+ +RL E + A WSP G + F Sbjct: 346 AFSWHPDGQSIAFIC---DNSVMRCEVESGTCQRLTRRTEEAPSGDAVVWSPDGSQIAFM 402 Query: 408 RKKDG 412 R+ +G Sbjct: 403 REVNG 407 >gi|157363040|ref|YP_001469807.1| hypothetical protein Tlet_0173 [Thermotoga lettingae TMO] gi|157313644|gb|ABV32743.1| conserved hypothetical protein [Thermotoga lettingae TMO] Length = 425 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 21/160 (13%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI--SASYSP---DSSQIV 317 PRFS +GKR L +IY + L++ + N + I+ + +Y+P D ++ Sbjct: 201 PRFSPDGKRLLFQGSLHGFWNIYVMPLENYS----KNIVLISAGNNPAYNPCWYDDGTVL 256 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQ--GDLIAFTKFSGEKFAIG 374 + D E +L ++ + +K+I E Y F+ V+SP D I F F I Sbjct: 257 YVQDSEYGNRL-LLSTIAKKRKQI----EIPYPFEMVFSPTVYKDTIYFVGLKESDFGIY 311 Query: 375 VMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDG 412 + DG+ +VE++ N P SP GR L +S G Sbjct: 312 ALTSDGTVT--VVENTVFNEHDPAISPDGRYLAYSCNITG 349 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 K+ IY++ T + NT+F + SPD + + + G ++V + Sbjct: 304 KESDFGIYALTSDGTVT-VVENTVFNEHDPAISPDGRYLAYSCNITGYYTIWVKDLFTQE 362 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + I+QD F PV+SP G ++AF+ + G Sbjct: 363 KWCITQDIPHDAFYPVFSPDGKVVAFSVYEG 393 >gi|326800508|ref|YP_004318327.1| hypothetical protein Sph21_3114 [Sphingobacterium sp. 21] gi|326551272|gb|ADZ79657.1| WD40-like beta Propeller containing protein [Sphingobacterium sp. 21] Length = 1043 Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 IG F ++ +P +G S K+ DIY DL S + +LTN + + S+S D Sbjct: 400 IGEFANITWSP----DGNLVAFSGLKNGYSDIYLYDLSSKSLTQLTNDWYSDYHPSFSRD 455 Query: 313 SSQIVFESDREGKEQLY 329 +IVF +DR E Y Sbjct: 456 GKKIVFSTDRLSLESGY 472 Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 16/190 (8%) Query: 234 EDILRVYLMDT-RIDRAPKRIGNFR--SMILAPRFSSNGKRALISVQKDE-AMDIYSVDL 289 E+ + L+DT ++ R I N +M ++P S +GK +KD ++D++ D Sbjct: 273 ENAYKPLLIDTAQVPRGQMIINNKNGGNMNVSPTISPDGKYVAFLSEKDLFSIDLFLADA 332 Query: 290 QSNA-----TERLTNTL-----FINISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQ 338 + + R N+ +I + S+S DS + F +G+ +L ++ NG Sbjct: 333 GTGKIIRKLSSRQNNSHIDEFSYIESAGSFSHDSKKFAFSVFSQGRTKLLIVDVENGKTL 392 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTW 397 S + + WSP G+L+AF+ I + L D + P++ Sbjct: 393 ATESMGDIGEFANITWSPDGNLVAFSGLKNGYSDIYLYDLSSKSLTQLTNDWYSDYHPSF 452 Query: 398 SPSGRSLIFS 407 S G+ ++FS Sbjct: 453 SRDGKKIVFS 462 >gi|83945669|ref|ZP_00958014.1| Acylaminoacyl-peptidase [Oceanicaulis alexandrii HTCC2633] gi|83850870|gb|EAP88730.1| Acylaminoacyl-peptidase [Oceanicaulis alexandrii HTCC2633] Length = 682 Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 21/94 (22%) Query: 336 SDQKRISQDKEASYFD------PVWSPQGDLIAFTK---------FSGEKFAIGVMKKDG 380 S Q+R + YFD P +P G+ I +T+ F+ E +A M DG Sbjct: 19 SAQERPDTLQLEHYFDWEQAGSPQIAPDGEDIVYTRTRVDAVNDGFASELWA---MDSDG 75 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 + R L S+ Q WSP GR L F R DG T Sbjct: 76 ERHRFLTRGSSAQ---WSPDGRRLAFIRGVDGHT 106 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 13/109 (11%) Query: 306 SASYSPDSSQIVFESDR-----EG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S +PD IV+ R +G +L+ M S+G + +++ A WSP G Sbjct: 40 SPQIAPDGEDIVYTRTRVDAVNDGFASELWAMDSDGERHRFLTRGSSAQ-----WSPDGR 94 Query: 360 LIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +AF + + + M +G++ ++ E ++ WSP G S+ F Sbjct: 95 RLAFIRGVDGHTQLFVRWMDAEGAESQITHEQLTIKQFRWSPDGESIAF 143 >gi|309790238|ref|ZP_07684808.1| WD-40 repeat-containing protein [Oscillochloris trichoides DG6] gi|308227702|gb|EFO81360.1| WD-40 repeat-containing protein [Oscillochloris trichoides DG6] Length = 635 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RL N ++ + ++++ + D G+EQ ++ + + + I + WS Sbjct: 514 RLANGRLVDELRRHKNWAAKLAWHPDGSGEEQPWLWRVSDTSLCLIVTGHRNYVYCVAWS 573 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSL 404 P G ++A G + + + DGS LL+ S+ +QA WSP G SL Sbjct: 574 PDGQVLASC---GADSTLRLWRNDGSPISLLMGHSDWVQAVAWSPDGNSL 620 >gi|116623034|ref|YP_825190.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226196|gb|ABJ84905.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 866 Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 49/236 (20%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD---EDILRVYLMDTRI- 246 ++L +DR GA RD PR SP+ +K+A A D DI R L TRI Sbjct: 594 STLVWVDRKGAEESAGPAPRD--YSTPRVSPDGRKLAVAADSDIWVYDIPRGTL--TRIT 649 Query: 247 ----DRAP------KRI--------------GNFRSMIL-------APRFSSNGKRAL-- 273 +R+P KRI G+ + L ++ +GKR L Sbjct: 650 FSGDNRSPVWTPDGKRITYVANGKISWSLLDGSAHAETLWNGAFGLPTSWAPDGKRLLFT 709 Query: 274 -ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + I SV+ + + L + F A++SPD ++ + SD + ++YV + Sbjct: 710 QLGTSNHTDVSILSVEGERKVSPIL-QSRFRAGQAAFSPDGRRMAYTSDESARPEIYVQE 768 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G K Q DPVW QG + F + G+ A+ + + R+L E Sbjct: 769 FPGPGGK--VQVSSQGGLDPVWGRQGREL-FYRSGGKMMAVDI---EAGTARVLFE 818 >gi|120436552|ref|YP_862238.1| secreted prolyl oligopeptidase family protein [Gramella forsetii KT0803] gi|117578702|emb|CAL67171.1| secreted prolyl oligopeptidase family protein [Gramella forsetii KT0803] Length = 634 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 16/190 (8%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT----LFINISASYSPDSSQIVFES 320 FS+N + LIS + ++Y +++ + + +T + LF + Y P+SS I++ + Sbjct: 42 FSANESKLLISNDESGIFNLYEINISDGSQKAITTSDQESLF---AVDYVPNSSDILYSA 98 Query: 321 DREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVM 376 D+ G E LY+++ +G+ ++ + + E F WS + + K + F + M Sbjct: 99 DKGGNEISHLYLLKPDGTSKELTTGENEKVNF-AGWSTDKSTMYYLSNKRDPQFFDLYKM 157 Query: 377 KKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + +L E++ S SG+ LI S K + +KL+ ++ T I+ P Sbjct: 158 EIGKWEPNMLYENNEGYSVSEVSSSGKFLILS-KPITTSENKLFLLNRESEEMTEISKPG 216 Query: 436 YASDPQWVGF 445 + P GF Sbjct: 217 FNYSP--TGF 224 >gi|294142361|ref|YP_003558339.1| hypothetical protein SVI_3590 [Shewanella violacea DSS12] gi|293328830|dbj|BAJ03561.1| hypothetical protein [Shewanella violacea DSS12] Length = 733 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV-MQSNGSDQKRISQDKEAS 348 Q+ +RLT S SPD + F G++ + M S +D S Sbjct: 179 QNTELKRLTFLDGQEFSPVLSPDGKYLAFSQRDLGEKNWRIGMMEIESRLVVYLEDPMDS 238 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKD----GSQERLLVEDSNLQAPT--WSPSG 401 P +SP G IA+ ++ + I V+ K G +++ LQ+ + W+PSG Sbjct: 239 QGYPAFSPDGSRIAYLSYNNDGGCKINVVDKHSRTFGKIQKITDCKRKLQSTSIAWNPSG 298 Query: 402 RSLIF---SRKKDGDTGSKLYSIDLNGRNETLINTP 434 +SL + ++ D T K++S+ LNG N+ I P Sbjct: 299 QSLFYIDEDQQHDYHTEKKVFSVSLNGNNKQQITQP 334 >gi|116331809|ref|YP_801527.1| Tol transport system component [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125498|gb|ABJ76769.1| Tol transport system component [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 2587 Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 262 APRFSSNGKRAL-ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +P +SS+GK + +S Q++ + D+Y +DL S +ERLT ++N S S S D + + S Sbjct: 217 SPVWSSDGKSIVYLSYQENPSGDVYLLDLMSGKSERLTKDSYLNFSPSLSDDKRYLYYTS 276 >gi|116327580|ref|YP_797300.1| Tol transport system component [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120324|gb|ABJ78367.1| Tol transport system component [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 2587 Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 262 APRFSSNGKRAL-ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +P +SS+GK + +S Q++ + D+Y +DL S +ERLT ++N S S S D + + S Sbjct: 217 SPVWSSDGKSIVYLSYQENPSGDVYLLDLMSGKSERLTKDSYLNFSPSLSDDKRYLYYTS 276 >gi|116626377|ref|YP_828533.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116229539|gb|ABJ88248.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 750 Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 276 VQKDEAMDIYSVDLQ-SNATERLTNTLFINISASYSPDSSQIVFES--------DREGKE 326 V + E ++Y++DL+ N +T + + +A YSPD IVF S DR + Sbjct: 240 VHEMEIAELYTIDLERDNKATAITRDFYNHSAAQYSPDGRTIVFTSTPAVADHPDRLRRS 299 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 ++ M ++G++ + + K+ S+ +P ++ G Sbjct: 300 AVWTMTADGANPHVLLERKDYSFSNPRFTSDG 331 >gi|325103940|ref|YP_004273594.1| WD40-like beta Propeller containing protein [Pedobacter saltans DSM 12145] gi|324972788|gb|ADY51772.1| WD40-like beta Propeller containing protein [Pedobacter saltans DSM 12145] Length = 1053 Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 T +++A + F ++ +P NGK + ++ DI+S +L + +LTN + Sbjct: 393 TLLEKAMGEVEQFGNITWSP----NGKDLAFTGLQNGQSDIFSYNLDTQQITQLTNDKYT 448 Query: 304 NISASYSPDSSQIVFESDR 322 + SYS D +IVF +DR Sbjct: 449 DFQPSYSTDGKKIVFSTDR 467 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 45/204 (22%), Positives = 91/204 (44%), Gaps = 30/204 (14%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI--------NISASYSPDSSQIVFESD 321 +R L S+ K + Y L+ +A + T I N++ + SPD + F S+ Sbjct: 262 ERTLSSLWKSALENTYRPLLKDSAQTKPIGTKLIDNVNGGEMNVAPAISPDGKYLAFLSE 321 Query: 322 RE-GKEQLYVMQS-NGSDQKRISQDKEASYFDP--------VWSPQGDLIAFTKFSGEKF 371 ++ LY+ + G ++++ + S+ D WSP AF+ FS + Sbjct: 322 KDLFSIDLYLADAKTGKIIRKLTSRIKNSHIDEFNFIESAGAWSPDSKQFAFSAFSKGRN 381 Query: 372 AIGVMKKDGSQ---ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + ++ + + E+ + E TWSP+G+ L F+ ++G S ++S +L+ + Sbjct: 382 QLVIVDIESGRTLLEKAMGEVEQFGNITWSPNGKDLAFTGLQNGQ--SDIFSYNLDTQQI 439 Query: 429 TLINT-------PAYASDPQWVGF 445 T + P+Y++D + + F Sbjct: 440 TQLTNDKYTDFQPSYSTDGKKIVF 463 >gi|262196214|ref|YP_003267423.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079561|gb|ACY15530.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1267 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 106/235 (45%), Gaps = 19/235 (8%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D ++ FSP+ K+ A+ D+ +RV+ D + P ++ A FS +G+ Sbjct: 848 DGVVRSAVFSPDGSKIVSAS--DDRTVRVWNADGSGE--PLVFHGHSDVVTAVDFSPDGR 903 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++S D + +++ D +T + S +SPD I S+ + + Sbjct: 904 R-IVSSDWDRTVRVWNADGSGTPMVLRGHTAAVT-SVHFSPDGRFIASSSE---DRTVRI 958 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--E 388 ++GS Q RI +A+ D +SP G I SG+ ++ + K E L++ Sbjct: 959 WHADGSGQPRILSGHDAAVMDVRFSPDGRYI--VSASGDA-SVRLWKAVRDAEPLVLRGH 1015 Query: 389 DSNLQAPTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + + + +SP GR ++ + + + D S+ + L G E++++ A++ D Sbjct: 1016 EHVVTSADFSPDGRRVVSTSEDQTVRVWDVASRSEPLVLRGHEESVMSA-AFSPD 1069 >gi|109947174|ref|YP_664402.1| translocation protein TolB [Helicobacter acinonychis str. Sheeba] gi|109714395|emb|CAJ99403.1| tolB protein [Helicobacter acinonychis str. Sheeba] Length = 417 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 71/372 (19%), Positives = 153/372 (41%), Gaps = 30/372 (8%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV+ DL+ S F+ +S++ + I + D + Q++ V E ++ Sbjct: 48 KLHEVLINDLKTSQHFD-VSENKEQSAIN-------YADLKNKKFQLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKF---FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + RL+DV + K F S + AH ++ + + + R + Sbjct: 100 IS-RLRLYDV--NTSTLTKTFDYPILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVF 156 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S+ + SG+ S+ + D + + + +F + Q + Y Y + + Sbjct: 157 SKYISSGV--TSIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERKPM--- 211 Query: 241 LMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 ++ I + + I + + M + SS+G + L+S+ D+Y D+ + ++T Sbjct: 212 ILKYNIQKGTHQSIASSQGMAVVSSVSSDGSKILMSLAPKGQPDVYLYDVHKKTSTKITR 271 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDP----- 352 I++S + D + F SDR G +Y+ + N S ++ + + K D Sbjct: 272 YPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLNESAEQLVYEGKSNESIDAYKDGI 331 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 V+ + +L +F F + ++ + R L + Q P +S G+++++ +K Sbjct: 332 VYVSRENL---NEFGKTVFNLNLITLNSKYIRRLTVNGVNQMPRFSVDGKNIMYIKKTPQ 388 Query: 413 DTGSKLYSIDLN 424 + L +D N Sbjct: 389 EYAMGLILLDYN 400 >gi|51892847|ref|YP_075538.1| hypothetical protein STH1709 [Symbiobacterium thermophilum IAM 14863] gi|51856536|dbj|BAD40694.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 341 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 29/168 (17%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT T ++ A +SPD +I F D Q+ + G + ++ A PVW P Sbjct: 67 LTQTAAMDGFAVWSPDGREIAFMRD----GQILLTTPQGRPVRVLTTQPGAWDAGPVWRP 122 Query: 357 QGDLIAFTKFSGEKFAIGVM--------KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 G +AF + S VM DG L E + W SG L ++ Sbjct: 123 DGRALAFVRLSTRDGGAQVMLLPVPPGNAPDGKPVALTSEPGAIGYLAWDHSGDRLYYT- 181 Query: 409 KKDGDTGSKLYSIDL-NGRNETLINTP----------AYASDPQWVGF 445 T ++ I + +GR E + P A A D +W+ F Sbjct: 182 -----TNDRIVRIAVPSGRKEEIFRAPEGWELISGGLAVAQDGRWLLF 224 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKK 410 VWSP G IAF + G+ I + G R+L P W P GR+L F R Sbjct: 78 VWSPDGREIAFMR-DGQ---ILLTTPQGRPVRVLTTQPGAWDAGPVWRPDGRALAFVRLS 133 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 D G+++ + + N A S+P +G++ Sbjct: 134 TRDGGAQVMLLPVPPGNAPDGKPVALTSEPGAIGYL 169 >gi|58040002|ref|YP_191966.1| Tricorn protease-like protein [Gluconobacter oxydans 621H] gi|58002416|gb|AAW61310.1| Tricorn protease homolog [Gluconobacter oxydans 621H] Length = 1089 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 18/168 (10%) Query: 284 IYSVDLQSNATERLTNTL----FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++SV L +RLT I+ SPD +QI F ++ +G ++YVM +G + Sbjct: 33 VWSVPLAGGQAQRLTTVPQGANAIDPHPVISPDGTQIAFAANFDGPTEIYVMPRSGGTPR 92 Query: 340 RISQDKEASYFDPVWSPQ-GDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTW 397 R++ + A W G L A +G + V D + + + S + Sbjct: 93 RLTFENVARLKIIGWDAHAGILYAAPAATGPYYTQTVTAIDPKTSAKHVFPLSGVNDAAL 152 Query: 398 SPSGRSLIFSRKKDGDTG-----------SKLYSIDL-NGRNETLINT 433 SP GR L R TG S+L+ DL NG+ I T Sbjct: 153 SPDGRWLYAVRFGLATTGDHMRAYRGGALSQLWRFDLQNGKEAERIGT 200 >gi|319786426|ref|YP_004145901.1| WD40-like beta Propeller containing protein [Pseudoxanthomonas suwonensis 11-1] gi|317464938|gb|ADV26670.1| WD40-like beta Propeller containing protein [Pseudoxanthomonas suwonensis 11-1] Length = 697 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 82/221 (37%), Gaps = 36/221 (16%) Query: 217 PRFSPNQQKVAYATYD-DEDI------LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 P SP+ +V +A + ED+ L + + TR PKR+ + +P FS++G Sbjct: 43 PVLSPDGARVVFARREIGEDLGKASTGLWIRDLRTRDLAPPKRLTPEGWSVNSPSFSADG 102 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 K K + +YS+ + +LT S SPD +I D Sbjct: 103 KSVYFLSAKGGSQQLYSIPVAGGEPRQLTRYPLDIGSYKVSPDGKRIAVSMD-------- 154 Query: 330 VMQSNGSD--------QKRISQDKEASYFDPV----WSPQGD-----LIAFTKFSGEKFA 372 V G+D KR +D + W D L T SG+K Sbjct: 155 VFTDCGADLDCTVSRLDKREKSKASGVVYDQLFVRHWDTWADGRHSRLFVTTPASGDKAP 214 Query: 373 IGVMKKDGSQERLLVEDS----NLQAPTWSPSGRSLIFSRK 409 V+ G E + S TWSP G+SL+FS + Sbjct: 215 APVLVGAGRNEPVGHVPSRPFGGSDEYTWSPDGKSLVFSMR 255 >gi|255038055|ref|YP_003088676.1| hypothetical protein Dfer_4309 [Dyadobacter fermentans DSM 18053] gi|254950811|gb|ACT95511.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053] Length = 460 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD SQ+ F D +G Q++ + G +++++ + W P G +++ + G Sbjct: 338 SPDGSQLAFLAKDAKGVSQIFTISPLGGKPRQVTECTSDVTGNLRWHPDGKHVSYV-YEG 396 Query: 369 EKFAIGVMKKDGS-QERL--LVEDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYSI 421 V DG +ER+ L E S WSP G+ L F+R DTG + + Sbjct: 397 SIVLCEV--GDGPFRERIQVLTEPSEFATSNLVWSPDGKVLAFNRLVKNDTGKAMQQV 452 >gi|16331616|ref|NP_442344.1| hypothetical protein slr0195 [Synechocystis sp. PCC 6803] gi|1001679|dbj|BAA10414.1| slr0195 [Synechocystis sp. PCC 6803] Length = 183 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 284 IYSVDLQSNATERLTNTLFINISASY---SPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 IY +LQ+N E L ++ AS+ + D IVF R+GK + + ++ Sbjct: 78 IYLYNLQNNRLETLPRLNALDQVASHPTITEDGRYIVFALSRQGKTDIVLYDRQTEQKRN 137 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 ++ D A +PV + GD IAF ++ I VM G Sbjct: 138 LTADLAADTRNPVINANGDRIAFEVAQDGQWDIMVMDAQG 177 >gi|119503812|ref|ZP_01625894.1| hypothetical protein MGP2080_01776 [marine gamma proteobacterium HTCC2080] gi|119460320|gb|EAW41413.1| hypothetical protein MGP2080_01776 [marine gamma proteobacterium HTCC2080] Length = 665 Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 23/159 (14%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------DREGKEQLYVMQSNG-- 335 +Y +D+ + T +LT F + S+SPD I F S DR +L+++ + Sbjct: 187 LYVIDVATQKTRQLTFGDFDDSQPSWSPDGKHIAFVSNRTEHPDRNRNTELWLLDTTAGP 246 Query: 336 SDQKRISQD--KEASYFDPVWSPQGDLIAFTKFSGEKFAI------GVMKKDGSQERLLV 387 S+ ++++ + ++AS P WSP +A+T + E I ++ + + +L+ Sbjct: 247 SEPRQLTFNSFQDAS---PTWSPDSKHLAYTTAASEDLPIYAIPQLAILNIESGESQLVA 303 Query: 388 EDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S +Q P +S +G L+ + G +L +DL+ Sbjct: 304 SLSEVQVFNPVFSANGNDLLTITEFQGQ--QQLVRVDLD 340 >gi|326515644|dbj|BAK07068.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 733 Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 20/121 (16%) Query: 275 SVQKDEAMDIYSVDLQSNA-----TERLTNTLFINISASYSPDSSQIVFESDREG----K 325 S + ++IY++ S ERLT+ F N S +PD ++ VF S R+G Sbjct: 477 SFSAGKPLEIYAISNVSGPRGGRKVERLTDGHFNNAFPSSNPDGTKFVFRSTRDGGAELH 536 Query: 326 EQLYVMQ-------SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 + LY+M+ S G+ ++ + ++ WSP+ D I F+ S A G K+ Sbjct: 537 KNLYIMEDAEVGEFSEGTVRRLTNGPWTDTHCS--WSPKNDWIVFS--SSRDKAAGAPKR 592 Query: 379 D 379 D Sbjct: 593 D 593 >gi|322830739|ref|YP_004210766.1| hypothetical protein Rahaq_0006 [Rahnella sp. Y9602] gi|321165940|gb|ADW71639.1| hypothetical protein Rahaq_0006 [Rahnella sp. Y9602] Length = 420 Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%) Query: 200 GANIRYLTPSRDQILFEPRF----SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 G R +T + + I +PR SP+ K+A+ D+ +++V+ + AP +I + Sbjct: 283 GVKQRRITFTENGIALQPRHWLRVSPDGAKIAFLMQDETGVVQVWTVSPN-GGAPAQISH 341 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN---TLFINISASYSPD 312 S I + S ++L V + M + D++S +RLT + YSPD Sbjct: 342 SESGIQSAFSWSQDGKSLALVCDNSVMRL---DMESGKMQRLTQRSENAPCADAVVYSPD 398 Query: 313 SSQIVFESDREGKEQLYVMQSN 334 S++ F G Q+ V S+ Sbjct: 399 GSKVAFMRQCNGYAQICVADSD 420 >gi|226226779|ref|YP_002760885.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] gi|226089970|dbj|BAH38415.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] Length = 760 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 18/141 (12%) Query: 278 KDEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQLYVM 331 +DEA DIY +D +LT+ + ++SPD QI F R +YV+ Sbjct: 322 RDEAERNDADIYIIDANGGTPRKLTDWMGAESQITWSPDGKQIAFIGRPGRTKNSNIYVV 381 Query: 332 QSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE- 388 + G + + + E FD W P G I FT G + A V++ D S + L E Sbjct: 382 DAAGGTPRALLGNWQYEPGNFD--WLPGG--IQFTAEIGGRSA--VLRADMSGKSLPTEL 435 Query: 389 ---DSNLQAPTWSPSGRSLIF 406 L+ ++ SG++L + Sbjct: 436 VSGRRQLRGASYDESGKTLAY 456 >gi|197105058|ref|YP_002130435.1| hypothetical protein PHZ_c1595 [Phenylobacterium zucineum HLK1] gi|196478478|gb|ACG78006.1| hypothetical protein PHZ_c1595 [Phenylobacterium zucineum HLK1] Length = 855 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 58/285 (20%), Positives = 115/285 (40%), Gaps = 53/285 (18%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF--EPRFSPNQQKVAYAT 230 ++R L V+++ G + L +D +R LT L EP+ SP+ ++VA+ Sbjct: 436 LDARTLVVADTPAGGGLPR-LSAIDATTGEVRALTAPPPDTLGDNEPQASPDGRQVAFRR 494 Query: 231 YDDEDILRVYLMDTRI--DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + ++D R +R R G + + +S +G+ L + + + ++ +D Sbjct: 495 TLRFGADEIVVLDVRTGRERTLTRDGWKAAGYV---WSPDGRNLLFASNRGGGLGLWRLD 551 Query: 289 LQSNA-TERLTNTL----FINISA----------------------SYSPDS-------- 313 + A E+++ L F+++SA S +P++ Sbjct: 552 ARRPAEPEQVSLGLGVVSFLHMSADRTGQAVVEIARPRSGLVRLGPSGAPEARIVTASND 611 Query: 314 --------SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + SDR G L++ + G R+++ + P WS G +AF Sbjct: 612 WDPVTGPDGAVAHISDRAGAPDLWI-SAPGGGATRLTEGLGSYVSSPAWSGDGRSLAFIA 670 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRK 409 G + I + +DGS+ L +D + ++P + P GR R+ Sbjct: 671 VIGRQADIFTVGRDGSRLLRLTDDGRDKRSPVFGPRGRVYYVERR 715 >gi|291568164|dbj|BAI90436.1| WD-40 repeat protein [Arthrospira platensis NIES-39] Length = 1179 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 31/233 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQK 278 SP+ + VA ++D+ +R++ M+ + K I N SM + FS NG+ + SV Sbjct: 917 SPDGEIVATGSWDES--IRLWNMEGEL---LKVINNAHSMGVNQLAFSPNGE-VIASVGN 970 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINI--SASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D+ V L S E + + + ++SPD +V S+ + +Y+ +GS Sbjct: 971 DK-----KVKLWSRVGEFIREWEYSEVITGVAFSPDGKMVVTGSEDKEVRVVYI---DGS 1022 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 + I + + S + +SPQGD+IA + + DG + +L + Sbjct: 1023 GTRLIG-NHQGSVWGVAFSPQGDIIASASTDN---TVRLWFLDGRKSIVLHHQGIVDHVA 1078 Query: 397 WSPSGRSLIFSRKKDG------DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +SP G +I S DG + G KL ++ R++ T A+++D +W+ Sbjct: 1079 FSPDGE-MIASASWDGTIQLWTNEGVKLKTLI---RHQGPARTVAFSNDGKWI 1127 >gi|310641988|ref|YP_003946746.1| peptidase s9 prolyl oligopeptidase active site domain protein [Paenibacillus polymyxa SC2] gi|309246938|gb|ADO56505.1| Peptidase S9 prolyl oligopeptidase active site domain protein [Paenibacillus polymyxa SC2] Length = 675 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 22/141 (15%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD SQ+ F +GK Q++++ + G + ++++ E + WSP G I+F + Sbjct: 78 WSPDGSQLAFLRSTDGKRQVWIIPARGGEARQLTH-VENNVRSLSWSPDGAYISFVAKTA 136 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDG-----DTGSKLYSID 422 E + G QE L GR + ++ K DG DT LY D Sbjct: 137 ENQSSSTCDV-GEQETHL-------------EGRVVNRTKAKSDGYGLWDDTRDHLYVTD 182 Query: 423 LNGRNETLINTPAY-ASDPQW 442 + + + + AY ++P W Sbjct: 183 VTSGHTVQLTSGAYDVAEPVW 203 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK 409 PVWSP G +AF + + K + ++ G + R L ++N+++ +WSP G + F K Sbjct: 76 PVWSPDGSQLAFLRSTDGKRQVWIIPARGGEARQLTHVENNVRSLSWSPDGAYISFVAK 134 >gi|302867847|ref|YP_003836484.1| hypothetical protein Micau_3380 [Micromonospora aurantiaca ATCC 27029] gi|315505751|ref|YP_004084638.1| hypothetical protein ML5_5014 [Micromonospora sp. L5] gi|302570706|gb|ADL46908.1| hypothetical protein Micau_3380 [Micromonospora aurantiaca ATCC 27029] gi|315412370|gb|ADU10487.1| hypothetical protein ML5_5014 [Micromonospora sp. L5] Length = 320 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Query: 307 ASYSPDSSQIVF-ESDREGKEQL--YVM---QSNGSDQKRISQDKEASYFDPVWSPQGDL 360 A SPD + + + R G L YV + G + ++ Y P WSP G Sbjct: 74 AKASPDGRYVAWVNTARSGDGTLEPYVAVYDRVTGQKRTLLADPFGVRYGAPTWSPDGTE 133 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IA G I V G+ R+LVE +++ P WS G S+I R + G +L Sbjct: 134 IALVTGQGNDRLIAVDVVTGAT-RVLVEGHSMRDPDWSRDG-SMIVVRWRSRSQGWQLRV 191 Query: 421 IDLNGRNETLINTP 434 ++L I TP Sbjct: 192 LELATGTVRPIYTP 205 >gi|145640335|ref|ZP_01795919.1| translocation protein TolB precursor [Haemophilus influenzae R3021] gi|145274921|gb|EDK14783.1| translocation protein TolB precursor [Haemophilus influenzae 22.4-21] Length = 143 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 36/139 (25%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS--------DQKRISQDKE-- 346 +T+ N ++SPD + I+F SDR G Q+Y M +NG +IS D + Sbjct: 1 MTSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDANGGSVTAVGGRGSAQISADGKTL 60 Query: 347 -----------------------ASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 S+ P SP G +I ++ G + ++ DG Sbjct: 61 VMINGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQGLGKVLQLVSADGR 120 Query: 382 -QERLLVEDSNLQAPTWSP 399 + L D ++ P WSP Sbjct: 121 FKASLPGSDGQVKFPAWSP 139 >gi|170744520|ref|YP_001773175.1| peptidase S41 [Methylobacterium sp. 4-46] gi|168198794|gb|ACA20741.1| peptidase S41 [Methylobacterium sp. 4-46] Length = 1125 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 33/205 (16%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD----TRIDRAPKRIGNFRSMILAP 263 P+R + SP Q+VA D + V D RI R P N P Sbjct: 331 PARSSEFSDLAVSPTGQEVALVAQGD---ISVAARDGKSVKRITRGPGEARN-------P 380 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQ-------SNAT----ERLTNTLFINISASYSPD 312 FS +G+R + ++D +Y L + AT RL + + Y+PD Sbjct: 381 TFSPDGRRLAYAAERDGRWGLYETSLAVPEETGFAQATRLVERRLPSAEGDALVPRYAPD 440 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP----VWSPQGDLIAFTKFSG 368 ++ + DR L + ++G+D++ + + +Y D WSP +A Sbjct: 441 GRRLAYVLDRAAVHILDL--ASGADREVVPPGRFYAYDDGRWWLAWSPDSRWLALPIQGE 498 Query: 369 EKFA--IGVMKKDGSQERLLVEDSN 391 + FA + V+ DGS+ L V + Sbjct: 499 QSFATNVAVVPADGSRPPLRVAPAG 523 >gi|149173999|ref|ZP_01852627.1| probable TolB protein (Precursor) [Planctomyces maris DSM 8797] gi|148846979|gb|EDL61314.1| probable TolB protein (Precursor) [Planctomyces maris DSM 8797] Length = 309 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 103/277 (37%), Gaps = 85/277 (30%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAY--------ATYDDEDILRVYLMDTRIDR-------- 248 ++ P P FSP+ QK+A+ + D I+ V T ++ Sbjct: 50 FIVPGEYYTAGSPVFSPDGQKLAFDGRKSQEGEKFSDGKIITVNADGTNLEAIGSGVMPS 109 Query: 249 ---APKRI----------------GNFRSMILA----PRFSSNGKRALISVQKDEAMDIY 285 A RI G+ R MI A ++S +GK+ +V+ +I Sbjct: 110 WSPAGNRIAFSQISPSGAALMHADGSHREMIEAGGWGAQWSPDGKKIAYTVRSGNKANIR 169 Query: 286 SVDLQSN-------ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY---VMQSNG 335 DL A E ++++ N++ +SPDS+ I F+ R E Y + + G Sbjct: 170 VYDLVEGTRTDLFPAGESPYSSIYWNMT--WSPDSNWICFKG-RNANESTYEIATVNAAG 226 Query: 336 SDQ--KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE----D 389 Q K +K A Y D W P G+ I F G+Q R L++ + Sbjct: 227 KQQGYKVHYSNKTAPYADIAWHPSGEKIVFAA--------------GAQPRQLMQFNPAE 272 Query: 390 SNLQAP-------------TWSPSGRSLIFSRKKDGD 413 AP ++P G+SL+F+ G+ Sbjct: 273 DKPPAPIEIKVNGTIIGDVCFTPDGQSLLFNVSGTGE 309 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 14/175 (8%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVD--LQSNATERLTNTLFINISASYSPDSSQIVFE 319 +P FS +G++ +K + + +S + NA + + S+SP ++I F Sbjct: 61 SPVFSPDGQKLAFDGRKSQEGEKFSDGKIITVNADGTNLEAIGSGVMPSWSPAGNRIAFS 120 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-K 378 L M ++GS ++ I EA + WSP G IA+T SG K I V Sbjct: 121 QISPSGAAL--MHADGSHREMI----EAGGWGAQWSPDGKKIAYTVRSGNKANIRVYDLV 174 Query: 379 DGSQERLLVEDSNLQAP-----TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 +G++ L + + TWSP + F + ++ ++ +++ G+ + Sbjct: 175 EGTRTDLFPAGESPYSSIYWNMTWSPDSNWICFKGRNANESTYEIATVNAAGKQQ 229 >gi|322371404|ref|ZP_08045953.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] gi|320548936|gb|EFW90601.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] Length = 676 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 14/129 (10%) Query: 310 SPDSSQIVF-----ESDREGKEQLYVMQSNGSDQKR--ISQDKEASYFDPVWSPQGDLIA 362 SPD ++ F + D + + +YV+ G + K+ IS+ ++S P WSP GD +A Sbjct: 21 SPDGERVAFVRSVPKDDEKYEATVYVVPLGGDEPKQFTISEGVDSS---PRWSPSGDRLA 77 Query: 363 FTKFSG---EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F G ++ + VM G + R + + + WSP G + F + D + Sbjct: 78 FVSTRGADDDRPQLWVMPTAGGEARQVTDVAGGVSQLAWSPDGTKIAFVQSSTEDDRDEE 137 Query: 419 YSIDLNGRN 427 + L+G Sbjct: 138 RDVSLDGEE 146 >gi|330836145|ref|YP_004410786.1| hypothetical protein Spico_0166 [Spirochaeta coccoides DSM 17374] gi|329748048|gb|AEC01404.1| hypothetical protein Spico_0166 [Spirochaeta coccoides DSM 17374] Length = 946 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 19/295 (6%) Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD-FNSRILFVSESVVSGIIKNSLCVM 196 Q G F +++R + +I+ + E+ D SR F + ++ S + + Sbjct: 250 QFTGFPFLGMDSAFRSHTGMTALEIFSAALKEQADKLASRSRFRTGTLFSPDEPGTYSLP 309 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDDEDILRVYLMDTRIDRAPKRIGN 255 R A + LT D+ R+ N+ + + A D L D + A RI Sbjct: 310 YRTEAGLIGLTAHPDRTARMVRYGANETETSMLAVIPGADGLSFSASDDGLKVAYSRI-- 367 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT-LFINISASYSPDSS 314 S++ + I DI ++ +++ LT+ F++ + SPD Sbjct: 368 ---------HSTSWEYGAIGTAAVSYADIVLYNVDDDSSVWLTSGGRFLH--PALSPDGK 416 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +++ + +L + +G D + + + E S ++P +SP G IAF + S ++ Sbjct: 417 KLIAIEATGTRYRLVRIPMDGGDGEVLYDNPETSVYEPRFSPDGRSIAFIETSHGLSSLR 476 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 +M +DG + + + ++ P +S S +L+FS DG LY D++ T Sbjct: 477 IMDEDGIRSVVPPGRAEIRYPRFSGS-DTLLFSSDVDGTF--ALYGADISSSKNT 528 >gi|303242868|ref|ZP_07329331.1| Peptidoglycan-binding lysin domain protein [Acetivibrio cellulolyticus CD2] gi|302589587|gb|EFL59372.1| Peptidoglycan-binding lysin domain protein [Acetivibrio cellulolyticus CD2] Length = 461 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 311 PDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD +++F+S D G +QLY ++ +GS++K+I + Y + SP G I +T S Sbjct: 274 PDGKELLFQSPDSSGIKQLYRIREDGSNKKQIGNNIWNFYNNVELSPDGSFILYTTPSAS 333 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRK--KDGDTGSKLYSIDLNG 425 I ++ + + + + P WS +I+S + G S++ +L G Sbjct: 334 VSIIYTLEINTGKIHQVPSGPQGKDYYPKWSTDSTRIIYSSTNYRPGSFYSQINIAELQG 393 Query: 426 RN 427 RN Sbjct: 394 RN 395 >gi|153873783|ref|ZP_02002249.1| beta transducin-like protein [Beggiatoa sp. PS] gi|152069751|gb|EDN67751.1| beta transducin-like protein [Beggiatoa sp. PS] Length = 627 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 172 DFNSRILFVSE--SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 DF + F S+ +V+SG N++ ++ G + + FSP Q + + Sbjct: 92 DFVMAVAFSSDDNTVLSGSADNTIKAWNKAGQKLDSFQDDFAGWFYSIAFSPTQNQALLS 151 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 T D + L DT + + + FS +G +AL S +D M ++ ++ Sbjct: 152 TSSDN---TLKLWDTENGNETGTLKGHQDWVYLVVFSPDGNKAL-SASEDGTMKVWDIEN 207 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESD 321 + A ++ +A++SPD SQI+ D Sbjct: 208 EEEAQSFEVEHIW---AAAFSPDGSQILTGGD 236 >gi|282864943|ref|ZP_06273997.1| peptidase S9 prolyl oligopeptidase active site domain protein [Streptomyces sp. ACTE] gi|282560368|gb|EFB65916.1| peptidase S9 prolyl oligopeptidase active site domain protein [Streptomyces sp. ACTE] Length = 629 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G +A+ + V D +E R+ ED NL + W+ + R L+++R + G Sbjct: 24 SPDGTKVAYLAPWRTHLNLWVGSVDAPEEARRVTSEDRNLLSYHWTGNPRWLLYTRDQGG 83 Query: 413 DTGSKLYSIDL 423 D S+LY +DL Sbjct: 84 DENSRLYRVDL 94 >gi|148263039|ref|YP_001229745.1| peptidase S9B dipeptidylpeptidase IV subunit [Geobacter uraniireducens Rf4] gi|146396539|gb|ABQ25172.1| WD-40 repeat-containing protein [Geobacter uraniireducens Rf4] Length = 976 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 20/215 (9%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKR 271 L PRFSP+ ++A+ D + + T D A + FR +S +G R Sbjct: 319 LTNPRFSPDGGRLAFNVNDPHGHSKTVI--TSRDGATIQ-AEFRRQFSDQGLSWSPDGNR 375 Query: 272 ALISVQK-----DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + + D D+Y+ DL+ + +RLT+ L I SPD + G + Sbjct: 376 LYFAQAEVVRGFDIYQDLYAYDLRRDRVQRLTSGLRIK-DPEISPDGKYFALAVNDRGSQ 434 Query: 327 QLYVMQS-------NGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVMK 377 L ++ + N + ++ ++ P W+P IA+ T G+ Sbjct: 435 NLALLDARETLDGRNNLKPRLVTAYRQERVATPRWAPDSRTIAYAVTDNRGKTSLRLYDV 494 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 K G LL N P+WS GR + + + G Sbjct: 495 KSGQDRPLLTVSYNAAYPSWSRDGRIIYYVSDETG 529 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGN 255 R+ R +T R + + PR++P+ + +AYA D+ + LR+Y + + DR P + Sbjct: 448 RNNLKPRLVTAYRQERVATPRWAPDSRTIAYAVTDNRGKTSLRLYDVKSGQDR-PLLTVS 506 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + P +S +G+ + ++++ DL+ + ++++ L + +PD Sbjct: 507 YNAAY--PSWSRDGRIIYYVSDETGVYNLFAYDLKEEKSYQVSHLLGGAMQPDAAPDDDT 564 Query: 316 IVFES 320 +VF S Sbjct: 565 LVFSS 569 >gi|242811032|ref|XP_002485707.1| acylamino-acid-releasing enzyme, putative [Talaromyces stipitatus ATCC 10500] gi|218716332|gb|EED15754.1| acylamino-acid-releasing enzyme, putative [Talaromyces stipitatus ATCC 10500] Length = 729 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 33/187 (17%) Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE---GKEQLYVMQ-SNGSDQKRISQDK 345 +++++ +LT LF + + ++SPD + + F SDR K +Y++ G + I+ + Sbjct: 117 RADSSRQLTRGLFRDYAPAWSPDGNAVAFVSDRADAGSKWAIYLLSLQEGCEAYPITPET 176 Query: 346 EASYFDP-VWSPQGDLIAFTKFS------------------GE--KFA-IGVMKKDGSQE 383 AS + +SP G IAF GE +FA + V+ Q Sbjct: 177 SASPIEAFAFSPDGSRIAFLSADEDIQLASAGDGPPDVQPWGETWRFARLRVVDLRTKQV 236 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGD------TGSKLYSIDLNGRN-ETLINTPAY 436 R D ++ + WSP G + FS D TG+ + +ID++ + E + + P Sbjct: 237 RCAKLDRHVTSVCWSPDGTRIGFSSCLSPDIEESHITGTTVSAIDVDLSSVEDVCHFPKM 296 Query: 437 ASDPQWV 443 D W Sbjct: 297 VVDLSWA 303 >gi|116624506|ref|YP_826662.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116227668|gb|ABJ86377.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 687 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 19/142 (13%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVF------ESDREGKEQLYVMQSN-GS 336 +Y D+ + E LT+ SA +SPD I F + +R ++VM++ G+ Sbjct: 201 LYLYDVATKKAEALTDPSLEAASAVWSPDGKWISFIGRSGKDWERYNTNNVFVMEARAGA 260 Query: 337 DQKRISQ----DKEASYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLL 386 ++++Q S WSP G + + + +G K + I ++ G ++L Sbjct: 261 VPRQLTQYDGVRGSVSRGRAEWSPDGTKLVYLQSTGAKQSAYNMTRIAMVPVAGGTPQVL 320 Query: 387 VE--DSNLQAPTWSPSGRSLIF 406 + D + AP ++P G S+IF Sbjct: 321 ADKLDRGVSAPRFTPDGASVIF 342 >gi|75908403|ref|YP_322699.1| peptidase C14 [Anabaena variabilis ATCC 29413] gi|75702128|gb|ABA21804.1| Peptidase C14, caspase catalytic subunit p20 [Anabaena variabilis ATCC 29413] Length = 1240 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 29/190 (15%) Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RLWDV Q IG+ I H E G ++ + +VSG Sbjct: 975 LRLWDVNG--QPIGQPL---------IGH------------ESGVYSVAFSPDGQRIVSG 1011 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 N+L + D +G +I + ++ FSP+ Q++ ++D + LR++ ++ + Sbjct: 1012 SGDNTLRLWDVNGQSIGQPLIGHESGVYSVAFSPDGQRIVSGSWD--NTLRLWDVNGQSI 1069 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 P IG+ S + + FS +G+R ++S D + ++ V+ Q + + + IS Sbjct: 1070 GQP-LIGH-ESGVYSVAFSPDGQR-IVSGSWDNTLRLWDVNGQPIGQPLMGHKAAV-ISV 1125 Query: 308 SYSPDSSQIV 317 ++SPD +IV Sbjct: 1126 AFSPDGQRIV 1135 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 162 IYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 I Q + G +G NS + F + +VSG N+L + D +G I + ++ F Sbjct: 943 IGQPLIGHEGAVNS-VAFSPDGQCIVSGSWDNTLRLWDVNGQPIGQPLIGHESGVYSVAF 1001 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ Q++ + D + LR++ ++ + P IG+ S + + FS +G+R ++S D Sbjct: 1002 SPDGQRIVSGSGD--NTLRLWDVNGQSIGQP-LIGH-ESGVYSVAFSPDGQR-IVSGSWD 1056 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + ++ V+ QS + + + S ++SPD +IV Sbjct: 1057 NTLRLWDVNGQSIGQPLIGHESGV-YSVAFSPDGQRIV 1093 >gi|145605657|ref|XP_370472.2| hypothetical protein MGG_06969 [Magnaporthe oryzae 70-15] gi|145013456|gb|EDJ98097.1| hypothetical protein MGG_06969 [Magnaporthe oryzae 70-15] Length = 924 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + ++SP+ S I + ++GK L + +S G Q I++ A+ D VW P+ ++++FT Sbjct: 236 AMAWSPNGSMIA-TAAKDGK--LLIWESRG--QSVIARHSYANIMDIVWHPKANIVSFTT 290 Query: 366 FSGEKF 371 F+GE F Sbjct: 291 FAGEVF 296 >gi|119773984|ref|YP_926724.1| periplasmic component of the Tol biopolymer transport system-like protein [Shewanella amazonensis SB2B] gi|119766484|gb|ABL99054.1| periplasmic component of the Tol biopolymer transport system-like protein [Shewanella amazonensis SB2B] Length = 700 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 9/211 (4%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P SP+ + + Y ++ +D D +P+++ S L +S++GK Sbjct: 178 PSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELRAVWSNDGKSLYFP 237 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----LYVM 331 I +DL+ L + + + + D + + F + ++ L + Sbjct: 238 SASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFITTNAPQKNAGIYLLDL 297 Query: 332 QSNGSDQKRISQDKEASYFDP--VWSPQGDLIAFTKFSGEKFAIGVMKK--DGSQERLLV 387 ++ R+S D E Y D +SP G +A + G+ +++ DGS+ RL Sbjct: 298 TEKEAEPVRLSCDTECPYRDRDFAFSPDGQTLAIARRFGDISEDIFLRQLADGSERRLTQ 357 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +++ +W GR L++S ++ G+ G L Sbjct: 358 GIEDIRGLSWHRDGRRLVYSTEEAGNRGGYL 388 >gi|170725571|ref|YP_001759597.1| winged helix family two component response transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810918|gb|ACA85502.1| putative two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 714 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 18/163 (11%) Query: 261 LAPRFSSNGKRALI-SVQKDEAMDIYSVDL--QSNATERLTNTLFINISASYSPDSSQIV 317 L P S +G+ + S K++ +Y DL + +RLT+T A + PD+ + Sbjct: 189 LYPAVSPDGRWLVYGSRSKNKRTSLYLKDLLKPTETPKRLTSTKTSEYRAVWHPDAGALY 248 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW---SPQGDLIAFTKFSGEKFAIG 374 + S+++GK L V+ + ++ ++ A Y D SP G +A+ G G Sbjct: 249 YPSEQKGKCSLTVLNLDSNEATKLG----ACYSDTAAIDISPDGSSLAYIWNEGNGHHSG 304 Query: 375 VMK-----KDGSQERLLVED---SNLQAPTWSPSGRSLIFSRK 409 + + KD RL + S + T+SP GR L +R+ Sbjct: 305 IYQLNLKDKDAEPVRLSCAENCGSRDRDMTFSPDGRWLAIARR 347 >gi|270158757|ref|ZP_06187414.1| dipeptidyl peptidase domain protein [Legionella longbeachae D-4968] gi|289166441|ref|YP_003456579.1| prolyl oligopeptidase [Legionella longbeachae NSW150] gi|269990782|gb|EEZ97036.1| dipeptidyl peptidase domain protein [Legionella longbeachae D-4968] gi|288859614|emb|CBJ13584.1| putative prolyl oligopeptidase [Legionella longbeachae NSW150] Length = 664 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 302 FINISASYSPDSSQ----IVF-----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 F+ I PD S+ +V+ +S +G + ++++ +G+ K+++ K+ S + P Sbjct: 35 FLRIKTISEPDLSKNGDWVVYSVEEGKSKTQGIKNIWLVSYDGTIAKQLTYSKKNSNYLP 94 Query: 353 VWSPQGDLIAFTKFSG-EKFAIGVM--KKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 WSP G IAF SG +K I + K+ G RL + W+P ++++F Sbjct: 95 KWSPDGQWIAFLSESGDDKTPILKLFSKQSGKVIRLTNPHYEVSDFVWAPDSKNIVF 151 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 27/186 (14%) Query: 217 PRFSPNQQKVAY-------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 P +S + ++AY A Y D ++ ++D + + +G P++S +G Sbjct: 269 PSWSSDNSQIAYIRSANSQAMYYDYAPTQLAVVDVATGQE-RVVGPVDQWFTDPQWSEDG 327 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 K + ++ + + +VD+ + +RLT ++ S +P +V SD + +L+ Sbjct: 328 KIIYVLMETSRNIHLSAVDVHTGKVQRLTQGSRVDEYFSVAPQKIVLV-SSDDQHPSELF 386 Query: 330 VMQSNGSDQKRISQDK--EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 ++ NG Q K E +F PV + I F F G + E LLV Sbjct: 387 ALEKNGLRQLTHHNQKLLEEVHFVPV-----EDIEFDSFDGTRI-----------EGLLV 430 Query: 388 EDSNLQ 393 + +N + Sbjct: 431 KPANYK 436 >gi|88857110|ref|ZP_01131753.1| hypothetical protein PTD2_01081 [Pseudoalteromonas tunicata D2] gi|88820307|gb|EAR30119.1| hypothetical protein PTD2_01081 [Pseudoalteromonas tunicata D2] Length = 673 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 276 VQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 V KD +++ VD ++ L + +S +SPD S++ F S+ G Q++V Sbjct: 57 VMKDSTRRNLWLVDTKTGVQSPLFSDENQYMSPRWSPDGSKVAFLSNASGSTQIHVHYLT 116 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + +SQ E+ WSP G +AF++ EK A+ Sbjct: 117 ENRTALLSQ-LESGVSGLTWSPDGKWLAFSQLVAEKPAV 154 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 17/131 (12%) Query: 294 TERLTNTLFIN---ISASY------SPDSSQIVFESDRE------GKEQLYVMQSNGSDQ 338 T L NTLF S Y SP Q+V+ + + L+++ + Q Sbjct: 17 TVALANTLFSANDIFSLEYASDVQLSPSGQQVVYIRNSNDVMKDSTRRNLWLVDTKTGVQ 76 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTW 397 + D E Y P WSP G +AF + I V ++ LL + +S + TW Sbjct: 77 SPLFSD-ENQYMSPRWSPDGSKVAFLSNASGSTQIHVHYLTENRTALLSQLESGVSGLTW 135 Query: 398 SPSGRSLIFSR 408 SP G+ L FS+ Sbjct: 136 SPDGKWLAFSQ 146 >gi|46122903|ref|XP_386005.1| hypothetical protein FG05829.1 [Gibberella zeae PH-1] Length = 676 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 32/175 (18%) Query: 264 RFSSNGKRALISVQ--------KDEAMDIY-SVDLQSNATERLTNTLFINISASYSPDSS 314 +FS NG+R + S K+ ++ + + N++ +LT+ F + S ++ P+ Sbjct: 26 KFSPNGQRLVYSTSLVGGHRKGKNHTSTLWLASTYEPNSSRKLTSGSFHDTSPTWHPNGD 85 Query: 315 QIVFESDR---EGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFS--- 367 I+F SDR ++ M+ +G D I+ +D E SP G IA+ Sbjct: 86 SILFLSDRVKLGETSAIWRMRLDGGDPVAITAEDNEQDIDTFSISPDGKTIAYVSCDEKK 145 Query: 368 ------------GEKF---AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIF 406 GEK+ + ++ + + +++V D+++ WSP G+SL F Sbjct: 146 KDDDEEAEPEVWGEKWDHARLRIVDVETHETKVIVGGDTHVGEIAWSPDGKSLTF 200 >gi|256840705|ref|ZP_05546213.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737977|gb|EEU51303.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 703 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Query: 266 SSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GKR + +V + +++ ++ + +++T T F A + ++IVF Sbjct: 65 SPDGKRVVYTVAYYSVPENKSNREVFVMNADGSDNKQITKTGFAENEAVWIKGGTKIVFL 124 Query: 320 SDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDP 352 + G QL+ M +G+D+KR+S +D E F P Sbjct: 125 CNESGSSQLWEMNPDGTDRKRLSDYDKDIEGFAFSP 160 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 13/164 (7%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE 326 GK IS D IY DL + T +T + + +YSPD I + S +R+G E Sbjct: 263 GKEYAISTNSD----IYVYDLNTKQTTNITEENKGYDTNPTYSPDGKSIAWLSMERDGYE 318 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGS 381 +L VM ++ +S+D +++ WS I FT + GE + +G+ Sbjct: 319 ADQNRLMVMNLETGEKTFVSKDFDSNVDSYCWSADCKRIYFTGVWHGESQVYQIDLANGN 378 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + L E A + G LI +++ G ++YSIDL G Sbjct: 379 KITPLTEGMYDYASV-ALLGDKLI-AQRHSMSMGDEIYSIDLTG 420 >gi|327543092|gb|EGF29531.1| TolB protein [Rhodopirellula baltica WH47] Length = 1169 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 K L V++ +G+D + +++ E P WSP G IA+ + +G +M+ D + Sbjct: 887 KPVLSVVRIDGTDLRDLAEPNETLLHVGSPDWSPDGTQIAYDQQAGSTLTARLMRVDKTG 946 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 V+ PT+SP G+ + FS + G + +D +G N T++++ + Sbjct: 947 GD-PVDLGFGSMPTFSPDGKRIAFSAARQG-----VGIMDADGSNRTILDSSGWG 995 >gi|168180499|ref|ZP_02615163.1| putative lipoprotein [Clostridium botulinum NCTC 2916] gi|182668879|gb|EDT80857.1| putative lipoprotein [Clostridium botulinum NCTC 2916] Length = 357 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVM 331 S+Q E M IY DL++ ++ + + ++ S + +I++ S++E K ++Y Sbjct: 139 SLQSAEGMKIY--DLENKKEIKIKSDVLVSGSLFKWLNEDEILYYGINSEKENKAKIY-- 194 Query: 332 QSNGSDQKRISQDKEASYFDPV------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++KE Y D + + P GD + G+KF + K + + Sbjct: 195 ------KYNVKENKEEVYVDNIEGICTYFMPNGDNVLLLSRQGDKFNLSYYNKKDNSFKK 248 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + E+ N Q + S +++ F K D + LY ID N N T Sbjct: 249 ISEEVN-QVYKGTKSTKNMYFLGKNDLENKDYLYKIDGNTLNLT 291 >gi|150006551|ref|YP_001301295.1| putative exported peptidase [Bacteroides vulgatus ATCC 8482] gi|294778830|ref|ZP_06744247.1| WD40-like protein [Bacteroides vulgatus PC510] gi|149934975|gb|ABR41673.1| putative exported peptidase [Bacteroides vulgatus ATCC 8482] gi|294447283|gb|EFG15866.1| WD40-like protein [Bacteroides vulgatus PC510] Length = 1086 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y + + T+++TNT +SPD IV+ ++R G Q+Y ++K+ + Sbjct: 336 DVYVTSTEYSTTKQITNTPQQERDIHFSPDGRSIVYAAERNGLWQIYQTSLAKKEEKQFA 395 Query: 343 ----------QDKEASYFDPVWSPQGDLIAF 363 + + + F P +SP G +AF Sbjct: 396 YATDIKEERLTNSDITSFQPQYSPDGKEVAF 426 >gi|170728819|ref|YP_001762845.1| transcriptional regulator, CadC [Shewanella woodyi ATCC 51908] gi|169814166|gb|ACA88750.1| transcriptional regulator, CadC [Shewanella woodyi ATCC 51908] Length = 711 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 16/113 (14%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT------------NTLFINISA 307 I +P F +GKR +++++ DI +V L L+ + F A Sbjct: 423 IGSPLFHPDGKR-MLAIKGHYDSDIVAVPLSQFTDNPLSLDGSNFRHSVIARSTFGENHA 481 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGD 359 Y P+ I + S R G Q+++ Q GS+ +++SQ +SY +D VW GD Sbjct: 482 KYQPNGDAIAYTSKRSGSWQMWLTQ--GSNTQQLSQFPLSSYIYDFVWGADGD 532 >gi|148656255|ref|YP_001276460.1| hypothetical protein RoseRS_2129 [Roseiflexus sp. RS-1] gi|148568365|gb|ABQ90510.1| hypothetical protein RoseRS_2129 [Roseiflexus sp. RS-1] Length = 487 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 34/178 (19%) Query: 265 FSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--D 321 F+S+ LI+V ++ + DI+ V +A R+TN I S S++PD S +VF + Sbjct: 145 FASSADGNLIAVTRETDQFDIWIVSRDGSALRRITNDRDIESSLSWAPDGSALVFAAADA 204 Query: 322 REGKEQLYVMQSNGSDQKRIS--------QDKEASYFDPVWSPQGDLIAF--------TK 365 E QL+ + ++S + A DP SP G IA+ T Sbjct: 205 SEPLPQLWPDWALWCGASQVSVIDLASGQRQTLARGCDPAVSPDGRRIAYSAPPTARDTG 264 Query: 366 FSGEKFAIG---------------VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 +G G DG+ L + P WSP G S+ + R Sbjct: 265 MAGGAPVFGNALRLINRRGENGWNFASADGADAPLPNTGMLVYGPAWSPDGASVTYHR 322 >gi|171059834|ref|YP_001792183.1| peptidase S9 prolyl oligopeptidase [Leptothrix cholodnii SP-6] gi|170777279|gb|ACB35418.1| peptidase S9 prolyl oligopeptidase active site domain protein [Leptothrix cholodnii SP-6] Length = 668 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 18/114 (15%) Query: 308 SYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGD 359 S PD +Q V R L+++ + G + ++ DK+ P WSP GD Sbjct: 22 SLCPDGAQAVVSVTRHDMAHNRSHSALWLLSTLGGAPRALTHCGDKDGQ---PAWSPHGD 78 Query: 360 LIAFTKFSGEKFA------IGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIF 406 LIAF ++ A + ++ DG + +R V + ++A W P G+ + F Sbjct: 79 LIAFIARRDQQGAKDEEPQLYLIAPDGGEAQRAAVLPTGVEAFKWFPDGKRIAF 132 >gi|302384287|ref|YP_003820110.1| acylamino-acid-releasing enzyme [Brevundimonas subvibrioides ATCC 15264] gi|302194915|gb|ADL02487.1| acylamino-acid-releasing enzyme [Brevundimonas subvibrioides ATCC 15264] Length = 705 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 19/131 (14%) Query: 308 SYSPDSSQIVFESDREGKEQLY-----VMQSNG---SDQKRISQDKEASYFDPVWSPQGD 359 +++PDS+ IVF + G+ + + + ++NG ++ D +A PV+SP G Sbjct: 252 TFTPDSAAIVFSARVAGQTEPWSTNFDLFRTNGLTGPGFTNLTDDNDAWDTGPVYSPDGR 311 Query: 360 LIAF-----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDG 412 +A+ F +++ I +M +R + D + + T WS GRSL G Sbjct: 312 TLAYRAMKRPGFEADRYQIVLMDVATGAKREVAADWDRSSDTLQWSADGRSLFVIA---G 368 Query: 413 DTG-SKLYSID 422 D G +KL+ ID Sbjct: 369 DVGQTKLFQID 379 >gi|315123008|ref|YP_004065014.1| putative peptidase [Pseudoalteromonas sp. SM9913] gi|315016768|gb|ADT70105.1| putative peptidase [Pseudoalteromonas sp. SM9913] Length = 672 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +I+SVD + + LT+ ++++ S SPD ++ F S+R G Q+Y+ ++S Sbjct: 64 NIWSVDYSTGQLQPLTSGVYMDYSPVVSPDGQRLAFISNRNGSNQIYIKWLKTGAIAKVS 123 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF 366 + ++ W+P + + F+ F Sbjct: 124 -NLTSNPSSLTWTPDSNQLVFSMF 146 >gi|315644874|ref|ZP_07898003.1| peptidase S9 prolyl oligopeptidase active site domain protein [Paenibacillus vortex V453] gi|315279816|gb|EFU43117.1| peptidase S9 prolyl oligopeptidase active site domain protein [Paenibacillus vortex V453] Length = 666 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 351 DPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DPV SP IA+ KF G + I ++ G+Q+ AP WSP G L Sbjct: 20 DPVVSPASGAIAYVHKSVSEKFDGYRSHIRLLPTVGTQDIPFTSGEADAAPAWSPDGSEL 79 Query: 405 IFSRKK 410 F RKK Sbjct: 80 AFLRKK 85 >gi|299139909|ref|ZP_07033080.1| peptidase S9 prolyl oligopeptidase active site domain protein [Acidobacterium sp. MP5ACTX8] gi|298598056|gb|EFI54223.1| peptidase S9 prolyl oligopeptidase active site domain protein [Acidobacterium sp. MP5ACTX8] Length = 407 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 6/89 (6%) Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDG 380 G ++++++ ++G K++++ E+ PV+SP G IA +F+ E+ I ++ +G Sbjct: 23 GWDKVFLIPASGGKPKQLTKG-ESEDETPVYSPDGKSIAIVSNREFA-EEHHIWIVPLNG 80 Query: 381 SQERLLVEDSNLQA-PTWSPSGRSLIFSR 408 S+ R L + +++ P WSP G ++ F R Sbjct: 81 SKPRRLTHLAGVESDPQWSPDGTTIYFQR 109 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 19/144 (13%) Query: 270 KRALISVQKDEAMD--------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 R+L++ Q+D + ++ + ++LT + + YSPD I S+ Sbjct: 5 HRSLVTGQQDLSSGFQETGWDKVFLIPASGGKPKQLTKGESEDETPVYSPDGKSIAIVSN 64 Query: 322 REGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKK 378 RE E+ ++++ NGS +R++ DP WSP G I F + + + A Sbjct: 65 REFAEEHHIWIVPLNGSKPRRLTHLAGVES-DPQWSPDGTTIYFQRGTALRSPATYTAAT 123 Query: 379 DGSQERLL-------VEDSNLQAP 395 +G + L E +NL AP Sbjct: 124 NGGEAHPLNPLPPSKYEQANLPAP 147 >gi|255014962|ref|ZP_05287088.1| putative peptidase [Bacteroides sp. 2_1_7] gi|298376459|ref|ZP_06986414.1| prolyl oligopeptidase family protein [Bacteroides sp. 3_1_19] gi|298266337|gb|EFI07995.1| prolyl oligopeptidase family protein [Bacteroides sp. 3_1_19] Length = 703 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 13/164 (7%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE 326 GK IS D IY DL + T +T + + +YSPD I + S +R+G E Sbjct: 263 GKEYAISTNSD----IYVYDLNTKQTTNITEENKGYDTNPTYSPDGKSIAWLSMERDGYE 318 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGS 381 +L VM ++ +S+D +++ WS + I FT + GE + +G+ Sbjct: 319 ADQNRLMVMNLETGEKTFVSKDFDSNVDSYCWSADCERIYFTGVWHGESQVYQIDLANGN 378 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + L E A + G LI +++ G ++YSIDL G Sbjct: 379 KITPLTEGMYDYASV-ALLGDKLI-AQRHSMSMGDEIYSIDLTG 420 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Query: 266 SSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GKR + +V + +++ ++ + +++T T F A + ++I F Sbjct: 65 SPDGKRVVYTVAYYSVPENKSNREVFVMNADGSDNKQITKTGFAENEAVWIKGGTKIAFL 124 Query: 320 SDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDP 352 + G QL+ M +G+D+KR+S +D E F P Sbjct: 125 CNESGSSQLWEMNPDGTDRKRLSDYDKDIEGFAFSP 160 >gi|299139123|ref|ZP_07032299.1| peptidase S9 prolyl oligopeptidase active site domain protein [Acidobacterium sp. MP5ACTX8] gi|298598803|gb|EFI54965.1| peptidase S9 prolyl oligopeptidase active site domain protein [Acidobacterium sp. MP5ACTX8] Length = 666 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 39/214 (18%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS----YSPDSSQIVFES 320 S NG +++ E I+ +L +L + AS +SPDS + F S Sbjct: 40 ISPNGSTLAWTLRDREDSTIHVAELAHFGDAKLVTPHGTSDCASGSPVWSPDSQTLAFTS 99 Query: 321 DREGK------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------TKFSG 368 GK EQ+++ + K+++ + P WSP G IAF T+ +G Sbjct: 100 SCTGKDAKTDQEQIFLWSKATGEIKQLTH-VTGNIEQPAWSPDGKQIAFLFVKNATRSAG 158 Query: 369 EKFAI----GVMKKDGS--QERLLVEDSNLQ-----APT-------WSPSGRSLIF-SRK 409 A+ GV+ +DG Q+ V ++ Q AP+ WSP R + F + Sbjct: 159 ALDAMKPWDGVIGEDGVEIQQVYAVSTTDGQENWETAPSLHVYEFAWSPDSRQVAFIAAN 218 Query: 410 KDGDTG---SKLYSIDLNGRNETLINTPAYASDP 440 G+ +KLY+ + R E P DP Sbjct: 219 PPGENNWWVAKLYAQTVLPRGEQPHQEPVVVLDP 252 >gi|94969246|ref|YP_591294.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] gi|94551296|gb|ABF41220.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] Length = 862 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 13/143 (9%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A++S D + + +G L+ +++GSD+ +++ D E + P WSP G I F + Sbjct: 613 AAFSKDGQWVAYVEFPQGN--LWRSRTDGSDRLQLTYDGEYAMM-PQWSPDGQTIVFFES 669 Query: 367 S----GEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 G F + V G R ++ + N Q P +SP G ++F G S + Sbjct: 670 PAGKLGHMFEVSV---SGGAPRQILPGATKNQQDPNYSPDGSKIMFG-GASGLPDSTIQI 725 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 +D+ R T + P+W Sbjct: 726 LDVKTRQVTTLPGSEGLFSPRWC 748 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 14/143 (9%) Query: 302 FINISASYSPDSSQIVF--ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 F+ I+ SPD+SQ++ + L++ + G + + D A + WS G+ Sbjct: 387 FVGIA--LSPDASQLIAIRRAPSAVAAPLWIAATLGGSPRPLG-DYVAQAAN--WSSDGN 441 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 I F+ G+ F V + G+ R + V + L +SP GRSL F R+ GDT Sbjct: 442 RIVFSNL-GDIF---VGDRSGAPARKVASVGAAVLSNMIFSPDGRSLRFDRQDRGDTPPT 497 Query: 418 LYSIDLNGRNETLINTPAYASDP 440 ++ + L+G N + P + S P Sbjct: 498 VWEVGLDGTNLHRV-FPGFTSPP 519 >gi|91216669|ref|ZP_01253634.1| putative exported tricorn protease [Psychroflexus torquis ATCC 700755] gi|91185138|gb|EAS71516.1| putative exported tricorn protease [Psychroflexus torquis ATCC 700755] Length = 1052 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 11/81 (13%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ + + +RLT I + +SPD S+I FE++ +G ++++ +NG KR Sbjct: 16 AEDLWVANRDGSNPKRLTIDKGIEANPVFSPDGSKIAFEAEYDGNVDVFIVSANGGVPKR 75 Query: 341 ISQDKEASYFDPVWSPQGDLI 361 ++ W P D + Sbjct: 76 LT-----------WHPYNDYV 85 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 25/214 (11%) Query: 233 DEDILRVYLMD----TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 D I +Y D R PKR+ + + P FS +G + + D +D++ V Sbjct: 8 DTHIAFIYAEDLWVANRDGSNPKRLTIDKGIEANPVFSPDGSKIAFEAEYDGNVDVFIVS 67 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV-MQSNGSDQKRISQDKEA 347 +RLT + + +S DS ++F S R Y+ + S +D I+Q Sbjct: 68 ANGGVPKRLTWHPYNDYVRDFSADSKTVLFVSQRNSFTNRYMQVFSVSTDGGAITQLDIP 127 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED---------------SNL 392 + F +S IA+T + ++F + G+ R+ + + SN Sbjct: 128 NAFWASYSDNDQSIAYTPIA-DRFNQWKHYRGGTVARIWLYNTQSHKVSEIQKPEGGSND 186 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 P W G + F +DG+ LYS + N + Sbjct: 187 SQPQW--MGEFVYFKSDRDGEF--NLYSYETNSK 216 >gi|239993670|ref|ZP_04714194.1| Acylaminoacyl-peptidase [Alteromonas macleodii ATCC 27126] Length = 708 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S +SPD S++ + S+ EGK QLYV + + Q + + ++ + WSP G IAFT Sbjct: 114 SIRWSPDGSRLAYLSNEEGKPQLYVRWMD-TGQTALVTNVTSNPSNITWSPDGKHIAFT 171 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-----EQLYVMQSNGSD 337 DI+SVD+ N + LTN + S SPD I + + K LYVM+S+G+D Sbjct: 272 DIFSVDMMGNIAQ-LTNDKGLESSPVVSPDGKHIAYARRDDEKVMYKNSYLYVMKSDGTD 330 Query: 338 QKRISQDKEASYFDPVW 354 K +++D + S + W Sbjct: 331 AKNLTKDVDNSVSNFHW 347 >gi|239981101|ref|ZP_04703625.1| peptidase S9 prolyl oligopeptidase [Streptomyces albus J1074] gi|291452970|ref|ZP_06592360.1| peptidase S9 [Streptomyces albus J1074] gi|291355919|gb|EFE82821.1| peptidase S9 [Streptomyces albus J1074] Length = 629 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G IA+ + + V + +E R+ ED NL + W+ R L+++R + G Sbjct: 24 SPDGTKIAYLAPWENRLNLWVGSVEAPEEARRVTSEDRNLLSYHWTDDPRWLLYTRDQGG 83 Query: 413 DTGSKLYSIDLN 424 D S LY +DL+ Sbjct: 84 DENSHLYRVDLD 95 >gi|224539442|ref|ZP_03679981.1| hypothetical protein BACCELL_04347 [Bacteroides cellulosilyticus DSM 14838] gi|224518947|gb|EEF88052.1| hypothetical protein BACCELL_04347 [Bacteroides cellulosilyticus DSM 14838] Length = 702 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 16/108 (14%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGD 359 SPD QI + + + +++VM ++G+ K+I+ Q+ E + W G Sbjct: 61 SPDEKQIAYTVAYYSVPENKSNREVFVMNTDGTGNKQITHTPWQENEVN-----WIKGGT 115 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 +AF G + M DGS + L + D +++ ++SP G+ L+F Sbjct: 116 KLAFLSNEGGSSQLWEMNPDGSGRKQLTQYDGDIEGYSFSPDGKKLLF 163 >gi|24215766|ref|NP_713247.1| TolB-like protein [Leptospira interrogans serovar Lai str. 56601] gi|24196947|gb|AAN50265.1| TolB-related protein [Leptospira interrogans serovar Lai str. 56601] Length = 2588 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 40/216 (18%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EG 324 +++G + + DI+ DL+S+ T +T + SPD ++VF S++ + Sbjct: 64 TADGSYLFYTTGQKGNYDIWFRDLKSSITVPVTTHPAPEYKPAISPDGKKLVFVSEQYDS 123 Query: 325 KEQLYVMQSNGS--------DQKRISQD-------------KEASYFD--PVWSPQGDLI 361 L +++ N ++ I+ D K+ SY D P ++P G + Sbjct: 124 SGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGKKDSYVDTDPFFAPDGRHL 183 Query: 362 AFTKFSGEKFAIG-----VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 F S ++ G V+ +G + L+ +P WS G+S+++ +DG G Sbjct: 184 VF---STDRLTPGIQNLVVLDTEGKEPMKLLTQKGGASPFWSKDGKSIVYISYQDGVFGD 240 Query: 417 KLYSIDL-NGRNETLIN------TPAYASDPQWVGF 445 +Y +DL +G+NE L +P+ + D +++ + Sbjct: 241 -VYLLDLSSGKNERLTKDSYLNFSPSLSEDKRYLYY 275 >gi|300712105|ref|YP_003737919.1| prolyl oligopeptidase family protein [Halalkalicoccus jeotgali B3] gi|299125788|gb|ADJ16127.1| prolyl oligopeptidase family protein [Halalkalicoccus jeotgali B3] Length = 611 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%) Query: 307 ASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 AS+SPD ++++F D G E QL+++ +G+ ++ EA + WS G+ AF Sbjct: 61 ASFSPDRTEVLFGMDEGGNERQQLFLLCPDGTVDP-LTAHPEAKHRFGGWSHDGERFAFA 119 Query: 365 --KFSGEKFAIGVMKKD--GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKK 410 + G F I +D G + L+ E D L WSP LI + Sbjct: 120 SNRRDGAVFDIYTQGRDERGEEAELIHEGDGWLTIGGWSPDDERLIVTESH 170 >gi|157368295|ref|YP_001476284.1| hypothetical protein Spro_0046 [Serratia proteamaculans 568] gi|157320059|gb|ABV39156.1| conserved hypothetical protein [Serratia proteamaculans 568] Length = 426 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 310 SPDSSQI-VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---K 365 SPD S I D G QL+V+ NG D ++++Q ++ W PQG IA Sbjct: 314 SPDGSMIACLMKDDAGVVQLWVVSPNGGDPRQVTQGEQGIQSAFSWHPQGGRIALVCDNS 373 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + A G M++ +R + S A +SP G + F R+ DG Sbjct: 374 LMLCEVASGRMQR--LTQRTALPPSG-DAVVFSPDGSKVAFMREIDG 417 >gi|85708707|ref|ZP_01039773.1| hypothetical protein NAP1_05690 [Erythrobacter sp. NAP1] gi|85690241|gb|EAQ30244.1| hypothetical protein NAP1_05690 [Erythrobacter sp. NAP1] Length = 678 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 18/142 (12%) Query: 263 PRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +G +A+ + ++ M ++ VDL +A E L S +SPD S+I Sbjct: 38 PQVSPDGSQAIYVRRFNDIMTDRTRSHVWIVDLDGSAHEPLLADGGSYRSPRWSPDGSRI 97 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + + G+ LYV S + + E WSP G +IAF M Sbjct: 98 AYMTSENGRTALYV-HYLASGRSALIGSFERGPSSITWSPDGTMIAF-----------AM 145 Query: 377 KKDGSQERLLVEDSNLQAPTWS 398 + ++LL S + W+ Sbjct: 146 SVEAKSDKLLSPPSRPEGANWA 167 >gi|295838967|ref|ZP_06825900.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197695523|gb|EDY42456.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 1073 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KF 366 SPD + + + S REG +++V G +R++ A W+P G+++A T + Sbjct: 51 SPDGATVAWTSHREGAPEVFVAPVEGGPSRRLTYWGSAKTAVRSWTPAGEVVAITSHGQA 110 Query: 367 SGEKFAIGVMKKDGSQERLL 386 S + + DGS R L Sbjct: 111 SMRRTWAHALPLDGSASRRL 130 >gi|45656912|ref|YP_000998.1| hypothetical protein LIC11028 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600149|gb|AAS69635.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 2588 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 40/216 (18%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EG 324 +++G + + DI+ DL+S+ T +T + SPD ++VF S++ + Sbjct: 64 TADGSYLFYTTGQKGNYDIWFRDLKSSITVPVTTHPAPEYKPAISPDGKKLVFVSEQYDS 123 Query: 325 KEQLYVMQSNGS--------DQKRISQD-------------KEASYFD--PVWSPQGDLI 361 L +++ N ++ I+ D K+ SY D P ++P G + Sbjct: 124 SGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGKKDSYVDTDPFFAPDGRHL 183 Query: 362 AFTKFSGEKFAIG-----VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 F S ++ G V+ +G + L+ +P WS G+S+++ +DG G Sbjct: 184 VF---STDRLTPGIQNLVVLDTEGKEPMKLLTQKGGASPFWSKDGKSIVYISYQDGVFGD 240 Query: 417 KLYSIDL-NGRNETLIN------TPAYASDPQWVGF 445 +Y +DL +G+NE L +P+ + D +++ + Sbjct: 241 -VYLLDLSSGKNERLTKDSYLNFSPSLSEDKRYLYY 275 >gi|322371180|ref|ZP_08045732.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] gi|320549170|gb|EFW90832.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] Length = 606 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 8/161 (4%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREG 324 +GK +S D M++Y D ++ +E+L ASY PD ++V+ ESD Sbjct: 115 DGKLLYVS-SADGQMNLYRYDRETETSEQLAEYELGVFHASYGPDGDRMVYMSNESDDLT 173 Query: 325 KEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +YV ++GS+ + + D ++F+ WS G + + + +K GV + Sbjct: 174 NMDVYVADADGSNPRNLELGIDGNETHFED-WSADGTKLLVSDNAADKTRSGVYDFESQS 232 Query: 383 ERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + ++ + P G + RK+D +Y D Sbjct: 233 VEWFGDGEYVEDGVAFLPDGSGFLALRKRDAAVVPLVYDFD 273 >gi|114778624|ref|ZP_01453440.1| TolB protein, putative [Mariprofundus ferrooxydans PV-1] gi|114551089|gb|EAU53650.1| TolB protein, putative [Mariprofundus ferrooxydans PV-1] Length = 360 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 12/93 (12%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFS- 407 +P SP G IAF+ +G + M DGS E + + DS + P WS G+ L+F+ Sbjct: 212 NPALSPDGKWIAFSMATGRSMHLFRMHPDGS-ELIQLTDSRSEDVQPAWSRDGQWLLFTS 270 Query: 408 -------RKKDGDTGSKLYSIDLNGRNETLINT 433 R DG ++ I NGRN T + + Sbjct: 271 NRSKPDLRHADGGQW-DIWRIGTNGRNLTQLTS 302 >gi|91794667|ref|YP_564318.1| transcriptional regulatory protein-like protein [Shewanella denitrificans OS217] gi|91716669|gb|ABE56595.1| transcriptional regulatory protein-like protein [Shewanella denitrificans OS217] Length = 691 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V S E K V+ + ++++ K+A+Y P W+ G+ + + K EK I Sbjct: 175 LVQSSSSEDKLNQVVLIDSATNKRTEITKKDANYLYPKWASNGEELLYLKCKREKCKIIK 234 Query: 376 MK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 K G +L++D+ + + S S + + + +G ++ +ID N N+TLI Sbjct: 235 HNIKTGLMHTVLLKDNYIMSYDISKSNKIIAINYLHEGTNTIEVVTIDDNSSNKTLI 291 >gi|256379383|ref|YP_003103043.1| hypothetical protein Amir_5378 [Actinosynnema mirum DSM 43827] gi|255923686|gb|ACU39197.1| WD40 domain protein beta Propeller [Actinosynnema mirum DSM 43827] Length = 1066 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 20/152 (13%) Query: 270 KRALISVQKDEAMDIYSVDLQSNA-----TERLTNTLFINISASYSPDSSQIVFESDREG 324 +RAL + EA YS D A E ++ + SA+ SP V G Sbjct: 64 QRALSGPDRGEAQPAYSPDGTRIAYVQWGVEAPPSSATPS-SATPSPAPGPPV-----TG 117 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---EKFAIGVMKKD-G 380 L V ++G+ + ++ + +P WSP G +A T +G + A G + D Sbjct: 118 FAGLVVANADGTSPRVLNPGIGGA--EPTWSPDGTKLAVTTEAGIRVLRVADGAVLADVP 175 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + L DS P WSP G ++ F+R+ DG Sbjct: 176 APPTLSARDSE---PAWSPDGTTIAFTRRIDG 204 >gi|238765079|ref|ZP_04626014.1| hypothetical protein ykris0001_18920 [Yersinia kristensenii ATCC 33638] gi|238696696|gb|EEP89478.1| hypothetical protein ykris0001_18920 [Yersinia kristensenii ATCC 33638] Length = 427 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 15/122 (12%) Query: 310 SPDSSQI-VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S I D +G QL+++ NG + ++++ ++ W PQG +AF + Sbjct: 314 SPDGSAIACLMKDDQGVVQLWLVSPNGGEPRQLTFTEQGIQSAFSWHPQGHSLAFVCDN- 372 Query: 369 EKFAIGVMKKDGSQERL--LVEDSNLQ----APTWSPSGRSLIFSRKKDGDTGSKLYSID 422 VM+ D + RL L S + A +SP G + F R+ DG ++L+++D Sbjct: 373 -----SVMQCDSTTGRLQRLTTRSAIAPLADAVVFSPDGAKVAFMREIDGL--AQLFTVD 425 Query: 423 LN 424 + Sbjct: 426 VG 427 >gi|193214091|ref|YP_001995290.1| peptidase S41 [Chloroherpeton thalassium ATCC 35110] gi|193087568|gb|ACF12843.1| peptidase S41 [Chloroherpeton thalassium ATCC 35110] Length = 1062 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S + A++ V +D D+++V+ RLT L S SPD I F S E Sbjct: 12 RHPSVFENAIVFVSED---DLWTVEASGGVARRLTAGLAECAFPSVSPDGKFIAFVSSEE 68 Query: 324 GKEQLYVMQSNGSDQKRIS 342 G+ +Y+M G KR++ Sbjct: 69 GQPDVYLMPILGGQPKRLT 87 >gi|149916648|ref|ZP_01905150.1| peptidase S9, prolyl oligopeptidase active site region [Plesiocystis pacifica SIR-1] gi|149822365|gb|EDM81754.1| peptidase S9, prolyl oligopeptidase active site region [Plesiocystis pacifica SIR-1] Length = 725 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 9/83 (10%) Query: 352 PVWSPQGDLIAFTK-----FSGEKFA-IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSL 404 P WSP G+ I FT +GE+ I ++ DG+ R + + + +P W P GRS Sbjct: 53 PQWSPDGERILFTATRYDLAAGEQNTDIYLVHADGTGLRAMTRFEGSDGSPRWLPDGRSF 112 Query: 405 IF-SRKKDGDT-GSKLYSIDLNG 425 +F S + D D+ G++L+ + ++G Sbjct: 113 VFVSTRSDADSEGAQLWRMAIDG 135 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 81/392 (20%), Positives = 146/392 (37%), Gaps = 102/392 (26%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY--QSITGEKGDFNS-RILFVSE--SVV 185 WD DR+ + PA+ ++ TI D +Y +S+ + + RILF + + Sbjct: 20 WDFVDRRDPL------DPAARKREPFTI-DTLYALRSVGAPQWSPDGERILFTATRYDLA 72 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFE-----PRFSPNQQKVAY-ATYDDEDILRV 239 +G + ++ DG +R +T FE PR+ P+ + + +T D D Sbjct: 73 AGEQNTDIYLVHADGTGLRAMT------RFEGSDGSPRWLPDGRSFVFVSTRSDADSEGA 126 Query: 240 YLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAMD-------------- 283 L ID P+R+ + + +P S +G R A ++ E D Sbjct: 127 QLWRMAIDGGEPERLTGVSTGVGSPEVSPDGARVAFVTTVFPEHGDDDLANAEAGTALAE 186 Query: 284 --------------------------IYSVDLQSNATERLTNTLF----INISASYSPDS 313 I+ ++L+S A +T F S ++SPD Sbjct: 187 NPIQAHIADDLLYRHWTAYADLQRSHIFVLELESGAVADVTPGDFDSPAFGGSFAFSPDG 246 Query: 314 SQIVFESDRE-----------------------GKEQLYVMQSNGSDQKRISQDKEASYF 350 ++ FES+R+ G + ++ I+ EA Sbjct: 247 KELCFESNRDPNNAQSWTTNKDLFVVPLVAEQAGPRGAAALAKAWAEPLNITDANEAYDG 306 Query: 351 DPVWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRS 403 P +SP G IAF + + ++ + V ++ + +L E D+ + W+P S Sbjct: 307 APAYSPDGRYIAFRRQAIPAYESDRARLAVYDRERGETTVLTEGFDNWVTDLAWAPDSAS 366 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 +IF +G T L+ ++ G T + PA Sbjct: 367 VIFEADVEGRT--PLFRVERAGGAITKLALPA 396 >gi|197105967|ref|YP_002131344.1| peptidase S9, prolyl oligopeptidase active site region [Phenylobacterium zucineum HLK1] gi|196479387|gb|ACG78915.1| peptidase S9, prolyl oligopeptidase active site region [Phenylobacterium zucineum HLK1] Length = 682 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRIS 342 I+ DL + A L N + +SPD +++ + S + G + QLYV +++ Sbjct: 75 IWLADLSTGAQAPLVVDDGNNFAPRWSPDGTRLAYVSAQPGERPQLYVRWVASGRSAKVA 134 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF---SGEKFAIGVMKKDGSQ 382 ++A D WSP G +AFT G+ + K DG++ Sbjct: 135 TLEQAPN-DIAWSPDGRTLAFTMIELDEGKPLGAPLKKPDGAK 176 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 12/103 (11%) Query: 265 FSSNGKRALISVQKD-------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 F+++G+ L + ++ + ++Y VD+ RLT+ + + + SPD +I Sbjct: 230 FTADGRGVLFASNRNPTWEREPQESEVYRVDIVDGRLTRLTSRVGPDAAPVPSPDGRRIA 289 Query: 318 F-ESDREGKEQ----LYVMQSNGSDQKRISQDKEASYFDPVWS 355 F +D +G+ LYVM ++G + ++++ + + S P WS Sbjct: 290 FVGNDDKGRSHEDSKLYVMDADGGNVRQLAANLDRSVGVPQWS 332 Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 352 PVWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSL 404 PV SP G IAF S E + VM DG R L D ++ P WS RSL Sbjct: 279 PVPSPDGRRIAFVGNDDKGRSHEDSKLYVMDADGGNVRQLAANLDRSVGVPQWSEDSRSL 338 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETL 430 F G T K+ + L+GR ET+ Sbjct: 339 YFDYVDKGVT--KVARVSLDGRLETV 362 >gi|254418871|ref|ZP_05032595.1| peptidase, S9A/B/C family, catalytic domain protein [Brevundimonas sp. BAL3] gi|196185048|gb|EDX80024.1| peptidase, S9A/B/C family, catalytic domain protein [Brevundimonas sp. BAL3] Length = 692 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%) Query: 309 YSPDSSQIVFESDREGKEQLY-----VMQSNG----SDQKRISQDKEASYFDPVWSPQGD 359 ++P IVF + GK + + + ++NG ++QD A PV+SP G Sbjct: 239 FTPAGDSIVFSARLAGKTEPWSTNFDLWKTNGLTGDGTFTNLTQDNPAWDAGPVFSPDGR 298 Query: 360 LIAF-----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDG 412 +A+ F +++ I +M Q+R + + + A T WS G++L + G Sbjct: 299 TLAYRAMARPGFEADRYQIVLMDVQSGQKREIASNWDRSADTLQWSRDGQTLYTTA---G 355 Query: 413 DTGS-KLYSIDLNGRNETLINTPAYAS 438 D GS +L+++D T + P + S Sbjct: 356 DVGSTRLFAVDTRNGVVTPVTGPGHVS 382 >gi|154280328|ref|XP_001540977.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150412920|gb|EDN08307.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 619 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L T + P +L + + A+IS ++ + +VD++S A +L + Sbjct: 365 LWATNANAIPAATWMLIHCVLDTQLQCRVRHAIISSKRKDG----TVDIESLAANKLVKS 420 Query: 301 LFINISASY-SPDSSQIVFESDREGKEQLYVMQSNGS---DQKRISQDKEASYFDPVWSP 356 LF+ I Y S S ++V E+ G YV G+ + I +D VWSP Sbjct: 421 LFLEILRVYVSSPSVRVVIETTELGG---YVFHKGGTIFIPGREIQKDPN------VWSP 471 Query: 357 QGDLIAFTKFSGEKF 371 G +KF E+F Sbjct: 472 NGSFPDASKFWAERF 486 >gi|124005883|ref|ZP_01690721.1| dipeptidyl peptidase IV (DPP IV) N-terminal region domain protein [Microscilla marina ATCC 23134] gi|123988566|gb|EAY28207.1| dipeptidyl peptidase IV (DPP IV) N-terminal region domain protein [Microscilla marina ATCC 23134] Length = 708 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 21/128 (16%) Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y D+ + ++LTN + AS+SPD S++ F D L+V+ + +I+ D Sbjct: 100 YVYDISTKKLDKLTNQPGKQLHASFSPDGSKVAFVRD----NNLFVVDLATKKETQITND 155 Query: 345 KEASYF-----DPV------------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + ++ D V WSP IAF KF K M++ G Q++ Sbjct: 156 GQWNHIINGNADWVYEEEFSFSKAFFWSPDSKRIAFYKFDESKVKEYNMQRWGGQKQPYA 215 Query: 388 EDSNLQAP 395 D + P Sbjct: 216 IDYRFKYP 223 >gi|330995271|ref|ZP_08319182.1| WD40-like protein [Paraprevotella xylaniphila YIT 11841] gi|329575988|gb|EGG57508.1| WD40-like protein [Paraprevotella xylaniphila YIT 11841] Length = 328 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 19/217 (8%) Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL--QSNATERL 297 Y+ + R+ + IG F + IL S++G + ++ +I+ DL Q ++ ++ Sbjct: 50 YVCMPEVKRSNRGIGWFSNRIL--DISTDGSQIAYLSFRNNTTNIFIKDLSKQGSSIQKT 107 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T ++ S YSPD QIVF R Q++ +N R Y P++S Sbjct: 108 NRTAVLDFS--YSPDGKQIVFSEARGKTNQIFQTSANKGFVCRQITTGNMDY-SPIYSAN 164 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +LI F + E +I + D L L + G + + S+ Sbjct: 165 MNLIFFAR--QENKSISIWSHDMKNNFLANYSQGLNP--YPVKGEPAFICVRPNAAGHSE 220 Query: 418 LYSIDL-NGRNETLIN-------TPAYASDPQWVGFM 446 ++ ++ G E +++ +P+ + D QW+ F+ Sbjct: 221 IWKVNYETGVEECIVSQPDRDFTSPSISPDGQWLLFV 257 >gi|238757301|ref|ZP_04618487.1| hypothetical protein yaldo0001_32180 [Yersinia aldovae ATCC 35236] gi|238704340|gb|EEP96871.1| hypothetical protein yaldo0001_32180 [Yersinia aldovae ATCC 35236] Length = 433 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 310 SPDSSQI-VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S I D G QL+++ NG + ++++ + W PQGD +AF Sbjct: 320 SPDGSAIACLMKDDNGMVQLWLVSPNGGEPRQLTSCQGGIQSAFSWRPQGDCLAFVC--- 376 Query: 369 EKFAIGVMKKDGSQERLL---VEDSNLQAPTWSPSGRSLIFSRKKDG 412 + + + G RL V A +SP G + F R+ DG Sbjct: 377 DNSVMLCESRSGQLHRLTARSVATPLADAVVFSPDGNKVAFMREIDG 423 >gi|226949209|ref|YP_002804300.1| putative lipoprotein [Clostridium botulinum A2 str. Kyoto] gi|226842597|gb|ACO85263.1| putative lipoprotein [Clostridium botulinum A2 str. Kyoto] Length = 357 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVM 331 S+Q E M IY DL++ ++ + + ++ S + +I++ S++E K ++Y Sbjct: 139 SLQSAEGMKIY--DLENKKEIKIKSDVLVSGSLFKWLNEDEILYYGINSEKENKAKIY-- 194 Query: 332 QSNGSDQKRISQDKEASYFDPV------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++KE Y D + + P GD + G+KF + K + + Sbjct: 195 ------KYNVKENKEEVYVDNIEGICTYFMPNGDNVLLLSRQGDKFNLSYYNKKDNSFKK 248 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + E+ N Q + S +++ F K D + LY ID N N T Sbjct: 249 ISEEVN-QIYKGTKSTKNMYFLGKNDLENKDYLYKIDGNTLNLT 291 >gi|21232747|ref|NP_638664.1| hypothetical protein XCC3318 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767180|ref|YP_241942.1| hypothetical protein XC_0847 [Xanthomonas campestris pv. campestris str. 8004] gi|21114563|gb|AAM42588.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572512|gb|AAY47922.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 784 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 305 ISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDL 360 +S S+SPD ++F + G ++ ++ + ++ FD P +SP G Sbjct: 331 LSFSWSPDGRALLFGTMTGAHGARRIRRLELETGQWQTLAYSAHPDDFDYMPRYSPDGAW 390 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I F + + + G+ ERL + + ++ +W P +IF R+ D + ++LY Sbjct: 391 IVFMRNPQMGDLWRMPAQGGTPERLTDDIAEIRGWSWLPDSSGVIFGRRVDSE--ARLYR 448 Query: 421 IDLNGRN 427 ++L+ R+ Sbjct: 449 LELHDRS 455 >gi|332711762|ref|ZP_08431693.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L] gi|332349740|gb|EGJ29349.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L] Length = 1142 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 40/232 (17%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D G I +T +D + + FSP+ QK+A A+ D R++ D I Sbjct: 561 IWDNQGNQIAVITGHQDSV-WSIAFSPDGQKLATASRDK--TARIW------DNQGHEIS 611 Query: 255 NFRS---MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R ++ + FS +G+R L + D+ I+ DLQ N LT S ++SP Sbjct: 612 VLRGHQDVVWSVAFSPDGQR-LATASDDKTARIW--DLQGNQIALLTGHQSRVNSVAFSP 668 Query: 312 DSSQIVFESDREGKE-------QLYVMQSN---------GSDQKRI---SQDKEASYFDP 352 D ++ SD + Q+ V+ + D +R+ S DK A Sbjct: 669 DGQKLATVSDDKTARIWDNQGNQIAVLTGHQDSVWSVAFSPDGQRLATGSDDKTAR---- 724 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 +W QG+ IA +G +F + + +RL + A W G + Sbjct: 725 IWDNQGNQIAL--LTGHQFRVNSIAFSLDGQRLATGSRDNTARIWDNQGNQI 774 >gi|116622781|ref|YP_824937.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225943|gb|ABJ84652.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 890 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 17/192 (8%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++L D R DR +I + +P+F GKR L V+K A +++ +L S +E L Sbjct: 606 IWLHDGRGDR---QI-SLEGYAFSPKFIPGGKRLLYRVRKGSASELWVAELDSGRSEPLL 661 Query: 299 NTLFINISA-------SYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + + S D Q++ S D GK +L++ + + R Q A Sbjct: 662 PGFAVATAGDGSLGGYDVSADGRQVLMASRDSAGKTRLWLAPLDRASAPR--QIPNAEGE 719 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 PV+ G++ F G + +++DGS R + + P SP L S Sbjct: 720 QPVFGSTGEVF-FRGIQGTSAFLYRVQQDGSGLRKASDVPIVGIPGASPDRNWLPLSSHT 778 Query: 411 DGDTGSKLYSID 422 G G L+ D Sbjct: 779 TG--GMVLFRTD 788 >gi|307607781|emb|CBI44152.1| putative acylaminoacyl-peptidase fragment [Bacillus amyloliquefaciens DSM 7] Length = 489 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 28/163 (17%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVF-----ESDREGKEQ-LYVMQSNGSDQKR 340 + L++ ++LT+ + A++SPD Q+ F E GK + +Y+M D K+ Sbjct: 3 IHLETGEIQQLTDHEADHFDAAFSPDGKQLAFTANLCEPGDAGKPRDVYLMNLADGDLKQ 62 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK---DGSQERL------------ 385 I+ S+ V+SP G IA E ++K D ERL Sbjct: 63 ITP-HSGSFGSCVFSPDGSYIALLGHENEFRNATLVKAWLYDVKNERLSCLTDMLDVHLS 121 Query: 386 --LVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 L+ DS + P W+ G+ + G TG SID Sbjct: 122 DALIADSLIGGVTPRPVWTNDGQGFYVLGSEQGSTGIYYISID 164 >gi|33321858|gb|AAQ06664.1| antigen P49Hb65 [Helicobacter bilis] Length = 428 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 66/368 (17%), Positives = 153/368 (41%), Gaps = 21/368 (5%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +++ +DL+ FN+ D+ K I + QD+ + + K+G L Sbjct: 57 IYKMLVQDLKTLGHFNVYYDDTLKTDILQNN--LALQDYKNKNMNFIAQVSQKKKGGS-L 113 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 L++ K I + + IAH ++ + I D+ +R + S V Sbjct: 114 IATLSLYEYASGKTITTEYREDETERYPFIAHAMASYLNDCIKAPNADWLNRYVVFSNYV 173 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 SG ++++ + D + + + + P+++ ++Q+ Y T + +Y + Sbjct: 174 GSG--RSNILIADYTFTYQKTIISNGLNMF--PKWADSKQEEFYYTLVTHEA-TIYKYNM 228 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + K I + + M + S +G + L+S+ DI+ +++S +LT I+ Sbjct: 229 YSGKNEKVISS-QGMAVVSDVSKHGDKLLLSLAPVGLSDIFLYEVKSKKLTQLTRYSGID 287 Query: 305 ISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++A ++ + VF SDR G +++ + N + + + + + S S G I Sbjct: 288 VNAHFTNNEKSFVFVSDRLGYPNIFMQDLMPNANVTQIVFKGRNNS----TLSTFGQYIV 343 Query: 363 FTKFSGEK------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 ++ ++ F + ++ R L + + P +S G S++F R++ + Sbjct: 344 YSSRESDEETGLNVFNLYLVSAHSDYVRRLSKIGTNRIPAFSHDGDSIMFLRQQKNEQAI 403 Query: 417 KLYSIDLN 424 + + +N Sbjct: 404 GIIRLSIN 411 >gi|82703420|ref|YP_412986.1| peptidase S9, prolyl oligopeptidase active site region [Nitrosospira multiformis ATCC 25196] gi|82411485|gb|ABB75594.1| Peptidase S9, prolyl oligopeptidase active site protein [Nitrosospira multiformis ATCC 25196] Length = 615 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + AS+S D +I+F S+ G Y + G + ++ + F + P D + T Sbjct: 16 MGASFSADEERILFSSNESGIFNAYTLPVTGGTAEALTCSASDTTFSVSFFPHDDRVLIT 75 Query: 365 K-FSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSL 404 + + G E + + ++ DG +E L E Q WSP G++ Sbjct: 76 RDYHGDENYHLFLLAPDGEEEDLTPGEKLKAQFMGWSPDGQAF 118 >gi|117921499|ref|YP_870691.1| transcriptional regulator domain-containing protein [Shewanella sp. ANA-3] gi|117613831|gb|ABK49285.1| transcriptional regulator domain protein [Shewanella sp. ANA-3] Length = 716 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 30/285 (10%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP-SRDQILFEPRFSPNQQKVAYATYD 232 ++++ F S S +G K ++ + + L P S D + SP+ Q +AY + Sbjct: 244 DTKLFFASRSHATG--KCTITQLTLATNEMLALAPCSTDMAAID--ISPDGQYLAYISSH 299 Query: 233 DED----ILRVYLMDTRIDRAPKRIG-----NFRSMILAPRFSSNGKRALISVQ-KDEAM 282 + D I R+ L + D +R+ N+ LA FS +GK I+ + + + Sbjct: 300 EADKVGGIYRLTL--AKADATAERLSCESQCNYEDRDLA--FSPDGKWLAIARRFSNISE 355 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 DI+ DL + +RLT L S++P+S +VF ++ G + + + + + Sbjct: 356 DIFIRDLANANEKRLTQGLEDIRGLSWTPNSQALVFATEDSGSRNGFTIDIETAHIRPL- 414 Query: 343 QDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 D E + S +G+L+ +F F++G K GS LL + + P +SP Sbjct: 415 -DVEGMSYPSSVSDEGELVYHQYRRQFQMAYFSLGD-KVPGSLFPLLYSGISHRNPHYSP 472 Query: 400 SGRSLIFSRKKDGDTG-SKLYSIDLNGRN-ETLINTPAYASDPQW 442 ++F DTG +++++ D+ G+ E + + P+W Sbjct: 473 EAGRIVFV---SSDTGYNEIWTSDIKGQKLEQHTQLKSRVAYPRW 514 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 18/234 (7%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 I + + D AN + LT + I ++PN Q + +AT +D + +D I+ Sbjct: 353 ISEDIFIRDLANANEKRLTQGLEDIR-GLSWTPNSQALVFAT-EDSGSRNGFTID--IET 408 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-- 306 A R + M S G+ ++ M +S L L L+ IS Sbjct: 409 AHIRPLDVEGMSYPSSVSDEGELVYHQYRRQFQMAYFS--LGDKVPGSLFPLLYSGISHR 466 Query: 307 -ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT- 364 YSP++ +IVF S G +++ G ++ +Q K + P WSP G IAF Sbjct: 467 NPHYSPEAGRIVFVSSDTGYNEIWTSDIKGQKLEQHTQLKSRVAY-PRWSPDGSKIAFIA 525 Query: 365 ---KFSGEK-FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 + G + F + + K+ + L N P+W+ G + +F+ DG T Sbjct: 526 PDDRNEGNRIFILDLTNKNITA--LASSYHNHGRPSWNWQG-TAVFASTSDGIT 576 >gi|300775443|ref|ZP_07085305.1| dipeptidyl peptidase IV N [Chryseobacterium gleum ATCC 35910] gi|300506183|gb|EFK37319.1| dipeptidyl peptidase IV N [Chryseobacterium gleum ATCC 35910] Length = 1063 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 7/148 (4%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P S +GK A S D I+ VD R+T I+ SPD + F S+ Sbjct: 28 SPSLSPDGKTAYFSYDGD----IWRVDSNGGNASRITALDGEEINPRVSPDGKWLAFSSN 83 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + G LYVM S G K+++ + WS I FT F +G Sbjct: 84 QYGNYDLYVMPSEGGTIKQLTFHTGKDEIEN-WSWDSKTIYFTSNRNNNFGSFKTTIEGK 142 Query: 382 QERLLVED--SNLQAPTWSPSGRSLIFS 407 + L + +N +P+G L S Sbjct: 143 TPQKLFNNYFNNTNGLAETPAGEYLFTS 170 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS N + L S +++ +DI+ +++ T LTNT +SP+ I F SDR Sbjct: 440 PSFSPNNEYVLFSAKRNFELDIFIYNIKKGQTLNLTNTGVSEEDPVWSPNGKYIYFASDR 499 >gi|91216587|ref|ZP_01253553.1| protease, putative [Psychroflexus torquis ATCC 700755] gi|91185381|gb|EAS71758.1| protease, putative [Psychroflexus torquis ATCC 700755] Length = 1099 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++V L +RLT S SPD I F + EG ++Y M +G R + Sbjct: 52 DLWTVPLNGGLAQRLTTHQEEENFPSISPDGKTIAFSASYEGPVEVYTMPISGGLPIRWT 111 Query: 343 QDKEASYFDPVWSPQGDLIAFTK 365 +++ S + W+P G +I T+ Sbjct: 112 YERDVSITNS-WTPDGKIIYNTR 133 >gi|226228052|ref|YP_002762158.1| putative S9C family serine peptidase [Gemmatimonas aurantiaca T-27] gi|226091243|dbj|BAH39688.1| putative S9C family serine peptidase [Gemmatimonas aurantiaca T-27] Length = 688 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 20/126 (15%) Query: 295 ERLTNTLFIN----ISASYSPDSSQIVFE-------SDREGKEQLYVMQSNGSDQKRISQ 343 +RLT + N + + SPD QI++ +DR + +++M ++G+ + + + Sbjct: 40 DRLTIADYFNWEDVAAPALSPDGKQILYTRTWTDQLNDRR-ESSVWIMNADGTKNRFLVK 98 Query: 344 DKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 A WSP+G IAF + SG++ + M +G+ ++ + WSP Sbjct: 99 GSNAK-----WSPEGSRIAFIANGEPSGQQIWVRYMDAEGATTQITRLTESPGDVEWSPD 153 Query: 401 GRSLIF 406 G +L F Sbjct: 154 GTTLAF 159 >gi|298249795|ref|ZP_06973599.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297547799|gb|EFH81666.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 703 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 22/164 (13%) Query: 263 PRFSSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P S +G++ ++ Q+ + I+ VD Q AS+SPD ++ Sbjct: 92 PAISPDGRQVAYTLWSFEGEQQKRSGRIWLVDTQGGEPVPFGGNNKSEWGASWSPDGKEL 151 Query: 317 VFES-DREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--- 371 F + D E + QL+V +G + R +P+WSP G I F +G++ Sbjct: 152 AFMALDGEPELPQLFVRALDGKSKARRICSMSRGLEEPIWSPDGSHIGFLARTGQEPDKD 211 Query: 372 ----------AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSL 404 + + + G R L E+ + WSP G+ + Sbjct: 212 PLVLAPASHQRLWAVHRHGDTPRPLTQENITVWEYAWSPDGKHV 255 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%) Query: 264 RFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-S 320 RFS KR+ + K E+ I + +QS E L T F A SPD Q+ + Sbjct: 52 RFSFLEKRSFVVRDTNKHESF-IPRIPVQS---ETLFATYFPATPA-ISPDGRQVAYTLW 106 Query: 321 DREGKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----KF 371 EG++Q ++++ + G + + + S + WSP G +AF GE + Sbjct: 107 SFEGEQQKRSGRIWLVDTQGGEPVPFGGNNK-SEWGASWSPDGKELAFMALDGEPELPQL 165 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + R+ L+ P WSP G + F Sbjct: 166 FVRALDGKSKARRICSMSRGLEEPIWSPDGSHIGF 200 >gi|268315847|ref|YP_003289566.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333381|gb|ACY47178.1| peptidase S9 prolyl oligopeptidase active site domain protein [Rhodothermus marinus DSM 4252] Length = 686 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 16/108 (14%) Query: 310 SPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD +IVF + DR + L++M ++GS Q+ + + + P WSP G IA Sbjct: 42 SPDGRRIVFTRRWVDQQKDRW-QSALWIMNADGSQQRFLVEGRS-----PRWSPDGTRIA 95 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP---TWSPSGRSLIFS 407 F E +K E +AP TWSP GR + F+ Sbjct: 96 FIANDAEGRPQIFVKWVDLPEPPTQLTHLTEAPGSITWSPDGRMIAFT 143 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 9/62 (14%) Query: 351 DPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP SP G I FT+ ++ A+ +M DGSQ+R LVE ++P WSP G + Sbjct: 38 DPQISPDGRRIVFTRRWVDQQKDRWQSALWIMNADGSQQRFLVEG---RSPRWSPDGTRI 94 Query: 405 IF 406 F Sbjct: 95 AF 96 >gi|193215349|ref|YP_001996548.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088826|gb|ACF14101.1| peptidase S9 prolyl oligopeptidase active site domain protein [Chloroherpeton thalassium ATCC 35110] Length = 631 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 309 YSPDSSQIVF--ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + P I+F ++ G QLY+++ NGSD KRI+ A Y +S G +A+ Sbjct: 95 WVPKHELILFGAKTGAAGTTQLYLIKPNGSDLKRITSKDSAEYRFKAFSNDGKWMAYEAN 154 Query: 367 SGEKFAIGV--MKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + + M + + RL+ ED ++ ++SP L+ S K + + LY DL Sbjct: 155 ARKANILDAYTMNLETLERRLIAAEDDCVRPISFSPDASYLLLS-KGNQAVNNDLYLADL 213 Query: 424 NGRNETLIN 432 + L+ Sbjct: 214 KTLKQVLLT 222 >gi|242072218|ref|XP_002446045.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor] gi|241937228|gb|EES10373.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor] Length = 730 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 20/124 (16%) Query: 260 ILAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATER---LTNTLFINISASYS 310 I AP ++ N + ++ S + ++I ++ S+ T + LT F N S S Sbjct: 436 IFAPMWNQNPDKDILYVCMGPSFNAGKPLEICAIPNVSSGTRQRRQLTKGKFNNAFPSSS 495 Query: 311 PDSSQIVFESDREGKEQ----LYVMQS------NGSDQKRISQDKEASYFDPVWSPQGDL 360 PD S+ VF S R+G ++ LY+ + +G R++ + E + WSP+GD Sbjct: 496 PDGSRFVFRSTRDGGDKKHKNLYIAEDAEVGEYSGGTVTRLT-NGEWTDTHCQWSPRGDW 554 Query: 361 IAFT 364 I F+ Sbjct: 555 IVFS 558 >gi|212634703|ref|YP_002311228.1| peptidase S9, prolyl oligopeptidase active site region:WD40-like Beta Propeller [Shewanella piezotolerans WP3] gi|212556187|gb|ACJ28641.1| Peptidase S9, prolyl oligopeptidase active site region:WD40-like Beta Propeller [Shewanella piezotolerans WP3] Length = 694 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +I+ VD N T +TN L + S SPD++++ + S G Q+++ ++S Sbjct: 80 NIWKVDKDKNLTP-VTNGLHSDFSPVLSPDNTKLAYISTASGSAQIHMQWLETGASGQMS 138 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF 366 A + WSP G +AFT+F Sbjct: 139 HLDHAP-SNISWSPDGKYLAFTRF 161 >gi|254786855|ref|YP_003074284.1| lipoprotein [Teredinibacter turnerae T7901] gi|237687152|gb|ACR14416.1| putative lipoprotein [Teredinibacter turnerae T7901] Length = 394 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 47/238 (19%), Positives = 98/238 (41%), Gaps = 45/238 (18%) Query: 250 PKRIGNFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 P +I + + P+FS NGK + +S +D + V + L++ S + Sbjct: 117 PTKIYENPGLEVQPKFSPNGKIISYVSRNRDNQQLSFLVPGREEPLVVLSSKEIT--SYA 174 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------------DKEASYF 350 +SPDSSQ+ + E + V+Q+ +K + + K+ +Y Sbjct: 175 WSPDSSQLAIAYNDETHSYIDVVQTADQSRKTLQRILLEGPADSAPATDTDNFQKQFAYV 234 Query: 351 DPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIF- 406 WSP D IAF + + + VM +G + + ++ +Q +W+ +G L++ Sbjct: 235 S--WSPAADKIAFIRHPRHRGTRQLWVMPLNGEPQLISPPEAQVQDGISWNSAGDHLLYS 292 Query: 407 ------------SRKKDGDTGSKLYSIDLNG------RNETLINTPAYASDPQWVGFM 446 S++K + G ++ + G +++ + P Y+ D Q + ++ Sbjct: 293 ALLGYKFYWDEASQRKIYEGGMHIFEYQVGGNSKQLTKHDHMFKNPTYSPDEQQIAYL 350 >gi|127511424|ref|YP_001092621.1| peptidase S9 prolyl oligopeptidase [Shewanella loihica PV-4] gi|126636719|gb|ABO22362.1| peptidase S9, prolyl oligopeptidase active site domain protein [Shewanella loihica PV-4] Length = 675 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 375 VMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET--LI 431 + +DG Q+R L + P +SP ++L F K+D D ++Y + ++G E L Sbjct: 69 LFSQDGKQQRALTAKGMRVSEPVFSPDSKTLAFISKRDKDEAGQIYLLPMDGPGEAQRLT 128 Query: 432 NTPAYASDPQWVG 444 + P+ +WVG Sbjct: 129 DVPSGVYGLKWVG 141 >gi|311030850|ref|ZP_07708940.1| WD-40-like beta propeller repeat-containing protein [Bacillus sp. m3-13] Length = 349 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIAF- 363 + + SPD IVF + G LY +GS+ +++ + E S+ P +S GD I F Sbjct: 45 TVTLSPDDKSIVFPFYQSGDGALYKANVDGSNVNQLTYPRQEESHVHPRYSSNGDKILFL 104 Query: 364 TKFSGEKF---AIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKK--------- 410 ++ GE ++ +M DGS+ RL E+ + +S +++ + K Sbjct: 105 SQEKGENTLTRSLYIMNSDGSELTRLSKENELITDAIFSQDDQTIFYLAAKHYQEGNEME 164 Query: 411 DGDTGSKLYSIDLNG 425 +G T LYSI + G Sbjct: 165 EGPTNIDLYSISITG 179 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 34/268 (12%) Query: 192 SLCVMDRDGANIRYLT-PSRDQILFEPRFSPNQQKVAYATYDD-EDILR--VYLMDTRID 247 +L + DG+N+ LT P +++ PR+S N K+ + + + E+ L +Y+M++ Sbjct: 66 ALYKANVDGSNVNQLTYPRQEESHVHPRYSSNGDKILFLSQEKGENTLTRSLYIMNSDGS 125 Query: 248 RAPKRIGNFRSMILAPRFSSNGKR----ALISVQKDEAM-------DIYSVDLQSNATER 296 R+ +I FS + + A Q+ M D+YS+ + + ER Sbjct: 126 EL-TRLSKENELITDAIFSQDDQTIFYLAAKHYQEGNEMEEGPTNIDLYSISITGDKKER 184 Query: 297 LTNTLFINI-SASYSPDSSQIVF-ESDREGKEQLY----VMQSNGSDQKRISQDKEAS-Y 349 LT+ + S S + D ++ + E +E ++ L+ VM + +++ ++ D + Sbjct: 185 LTHDESLKKRSLSLTEDGGKLGYVEWSKEEEKGLHSSFIVMDTQTMEKEYVNPDFNTNII 244 Query: 350 FDPVWSPQGDLIAFTKFSG---EK----FAIGVMKKDGSQERLLVEDSNL-QAPTWSPSG 401 + SP GDLIAF+ S EK + + M G + + L L P + Sbjct: 245 YSGKLSPTGDLIAFSAASENPREKSQFIYEMYTMSTSGKEVQPLTSFRTLITEPVFFRDK 304 Query: 402 RSLIFSRKKD---GDTGSKLYSIDLNGR 426 ++F + + G KL+++D+NG Sbjct: 305 ERVLFIQDQSWLRGKPNYKLWAVDINGE 332 >gi|149200423|ref|ZP_01877439.1| MdsD protein, putative [Lentisphaera araneosa HTCC2155] gi|149136492|gb|EDM24929.1| MdsD protein, putative [Lentisphaera araneosa HTCC2155] Length = 1121 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P S NG + + S D I+ + +R+T + ++ +S D +I FES+ Sbjct: 26 SPSLSPNGSQVIFSWNDD----IWISSSEGGLAKRMTQSKGLDYRPMFSHDGKKIAFESN 81 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEA 347 R G L+VM + G K++S + E Sbjct: 82 RLGPTYLFVMPTVGGPAKQVSFNSEG 107 >gi|110598068|ref|ZP_01386347.1| WD40-like Beta Propeller [Chlorobium ferrooxidans DSM 13031] gi|110340327|gb|EAT58821.1| WD40-like Beta Propeller [Chlorobium ferrooxidans DSM 13031] Length = 334 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 34/190 (17%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-------GKEQLYVMQSNG 335 +I+ L + +LT + + + SPD ++ F E G QL+++++ G Sbjct: 42 NIWIARLDGSGQRQLTGS-GRDTHPALSPDGKEVAFCRRTETEIYPDTGFGQLFMVETKG 100 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--------GEKFAIGVM-----KKDGSQ 382 +++ + + DP +SP G + F S GE A M + + Sbjct: 101 GTPRKVRFEGVLAAEDPAFSPDGKSLLFVGLSELRRAGKKGELQAFATMSITIGESRTGK 160 Query: 383 ERLLVEDSN--LQA------PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R +V+ N L A P +SP G+S+++ ++ D IDLNG+ L P Sbjct: 161 CRPVVQRKNSMLDAGYIYSNPAFSPDGKSILW-QESGSDVSGGFAIIDLNGKR--LFRYP 217 Query: 435 AYASD--PQW 442 SD P W Sbjct: 218 LKGSDFTPYW 227 >gi|312131782|ref|YP_003999122.1| peptidase s41 [Leadbetterella byssophila DSM 17132] gi|311908328|gb|ADQ18769.1| peptidase S41 [Leadbetterella byssophila DSM 17132] Length = 1064 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V +LT + +SPD QI F SDR G L++M + G + R++ Sbjct: 45 DLYKVPSAGGQATQLTFHEAHDYQPVWSPDGKQIAFASDRYGNFDLFIMNAQGGEATRLT 104 >gi|108762084|ref|YP_630642.1| hypothetical protein MXAN_2422 [Myxococcus xanthus DK 1622] gi|108465964|gb|ABF91149.1| hypothetical protein MXAN_2422 [Myxococcus xanthus DK 1622] Length = 1225 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 9/146 (6%) Query: 262 APRFSSNGK-RALISVQKDEAMDIYSVDLQSNATE---RLTNTLFINISASYSPDSSQIV 317 +P FS +G+ A I + DIY++DLQ+ +LT+ +F ++ P S IV Sbjct: 633 SPAFSPDGRWVAFIGINDAGLRDIYAIDLQAGPDAPPLQLTDDVFSEREVTWGP--SGIV 690 Query: 318 FESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 F SD Q L+ ++ + Q +E + PV G L FT F+ + Sbjct: 691 FTSDATSHRQFNLFRVRPDAPRQVERLTSEERDHTAPVALADGRLF-FTAFNNSSSDLHE 749 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSG 401 + KDG R + + P P G Sbjct: 750 LTKDGRIVRRTDLTTGVFEPGPGPDG 775 >gi|150008116|ref|YP_001302859.1| putative peptidase [Parabacteroides distasonis ATCC 8503] gi|149936540|gb|ABR43237.1| putative peptidase [Parabacteroides distasonis ATCC 8503] Length = 703 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 13/164 (7%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE 326 GK IS D IY DL + T +T + + +YSPD I + S +R+G E Sbjct: 263 GKEYAISTNSD----IYVYDLNTKQTTNITEENKGYDTNPTYSPDGKSIAWLSMERDGYE 318 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGS 381 +L VM ++ +S+D +++ WS I FT + GE + +G+ Sbjct: 319 ADQNRLMVMNLETGEKTFVSKDFDSNVDSYCWSADCKRIYFTGVWHGESQVYQIDLANGN 378 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + L E A + G LI +++ G ++YSIDL G Sbjct: 379 KITPLTEGMYDYASV-ALLGDKLI-AQRHSMSMGDEIYSIDLTG 420 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Query: 266 SSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GKR + +V + +++ ++ + +++T T F A + ++I F Sbjct: 65 SPDGKRVVYTVAYYSVPENKSNREVFVMNADGSDNKQITKTGFAENEAVWIKGGTKIAFL 124 Query: 320 SDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDP 352 + G QL+ M +G+D+KR+S +D E F P Sbjct: 125 CNESGSSQLWEMNPDGTDRKRLSDYDKDIEGFAFSP 160 >gi|301309779|ref|ZP_07215718.1| prolyl oligopeptidase family protein [Bacteroides sp. 20_3] gi|300831353|gb|EFK61984.1| prolyl oligopeptidase family protein [Bacteroides sp. 20_3] Length = 703 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 13/164 (7%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE 326 GK IS D IY DL + T +T + + +YSPD I + S +R+G E Sbjct: 263 GKEYAISTNSD----IYVYDLNTKQTTNITEENKGYDTNPTYSPDGKSIAWLSMERDGYE 318 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGS 381 +L VM ++ +S+D +++ WS I FT + GE + +G+ Sbjct: 319 ADQNRLMVMNLETGEKTFVSKDFDSNVDSYCWSADCKRIYFTGVWHGESQVYQIDLANGN 378 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + L E A + G LI +++ G ++YSIDL G Sbjct: 379 KITPLTEGMYDYASV-ALLGDKLI-AQRHSMSMGDEIYSIDLTG 420 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Query: 266 SSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GK+ + +V + +++ ++ + +++T T F A + ++I F Sbjct: 65 SPDGKKVVYTVAYYSVPENKSNREVFVMNADGSDNKQITKTGFAENEAVWIKGGTKIAFL 124 Query: 320 SDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDP 352 + G QL+ M +G+D+KR+S +D E F P Sbjct: 125 CNESGSSQLWEMNPDGTDRKRLSDYDKDIEGFAFSP 160 >gi|262381309|ref|ZP_06074447.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296486|gb|EEY84416.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 703 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 13/164 (7%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE 326 GK IS D IY DL + T +T + + +YSPD I + S +R+G E Sbjct: 263 GKEYAISTNSD----IYVYDLNTKQTTNITEENKGYDTNPTYSPDGKSIAWLSMERDGYE 318 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGS 381 +L VM ++ +S+D +++ WS I FT + GE + +G+ Sbjct: 319 ADQNRLMVMNLETGEKTFVSKDFDSNVDSYCWSADCKRIYFTGVWHGESQVYQIDLANGN 378 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + L E A + G LI +++ G ++YSIDL G Sbjct: 379 KITPLTEGMYDYASV-ALLGDKLI-AQRHSMSMGDEIYSIDLTG 420 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Query: 266 SSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GK+ + +V + +++ ++ + +++T T F A + ++I F Sbjct: 65 SPDGKKVVYTVAYYSVPENKSNREVFVMNADGSDNKQITKTGFAENEAVWIKGGTKIAFL 124 Query: 320 SDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDP 352 + G QL+ M +G+D+KR+S +D E F P Sbjct: 125 CNESGSSQLWEMNPDGTDRKRLSDYDKDIEGFAFSP 160 >gi|240279863|gb|EER43368.1| conserved hypothetical protein [Ajellomyces capsulatus H143] gi|325092992|gb|EGC46302.1| conserved hypothetical protein [Ajellomyces capsulatus H88] Length = 583 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L T + P +L + +RA+IS ++ + +VD++S A +L + Sbjct: 329 LWATNANAIPAATWMLIHCVLDTQLQCRVRRAIISSKRKDG----TVDIESLAANKLVKS 384 Query: 301 LFINISASY-SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-VWSPQG 358 LF+ I Y S S ++V E+ G YV G+ I DP VWSP G Sbjct: 385 LFLEILRVYVSSPSVRLVLETTELGG---YVFHKGGT----IFIPGREMQNDPNVWSPNG 437 Query: 359 DLIAFTKFSGEKF 371 ++F E+F Sbjct: 438 SFPDASEFWAERF 450 >gi|260174446|ref|ZP_05760858.1| prolyl oligopeptidase family protein [Bacteroides sp. D2] gi|315922713|ref|ZP_07918953.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696588|gb|EFS33423.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 700 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYVYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKTFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++YS+ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYSVALDGSTTQL 420 >gi|159897952|ref|YP_001544199.1| peptidase S9 prolyl oligopeptidase [Herpetosiphon aurantiacus ATCC 23779] gi|159890991|gb|ABX04071.1| peptidase S9 prolyl oligopeptidase active site domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 682 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 47/241 (19%), Positives = 93/241 (38%), Gaps = 47/241 (19%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD------ 243 ++++ ++ DG + +T S PR+SP+ K+A+ + D + +++++D Sbjct: 52 RSAIMLIQADGGIPQRMTFSVSGRDSSPRWSPDGSKLAFISTRDAGVAQLFVLDLARGGE 111 Query: 244 ----TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------------------- 277 T + I N+R A F S G +A Sbjct: 112 AQQLTSLGYGVAEI-NWRPDSQALAFISRGAKAKAQTHVESLRDEKIIERLPFKFDGVGY 170 Query: 278 -KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF------ESDREGKEQLYV 330 + E I+ V+L + +T+ F + ++SPD S++ F E + + +Y+ Sbjct: 171 LQPEYAQIWLVELGQEPNQ-ITDQAFDHADPAWSPDGSELAFITVSRAELEHTRQADMYL 229 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKFAIGVMKKDGSQERL 385 + + R + + P WSP G IA+ + A+ + + G RL Sbjct: 230 LNV-AAGTSRCLTNALGPVYHPTWSPDGSQIAYIGHDQHTGNASNEALWCVSRAGGDARL 288 Query: 386 L 386 L Sbjct: 289 L 289 >gi|298241399|ref|ZP_06965206.1| WD40 repeat, subgroup [Ktedonobacter racemifer DSM 44963] gi|297554453|gb|EFH88317.1| WD40 repeat, subgroup [Ktedonobacter racemifer DSM 44963] Length = 487 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 16/144 (11%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD +I S +G ++ + GS Q EASY WSP G IA S Sbjct: 253 AWSPDGKRIA-SSSEDGMLLVWDPEGKGSTQVYKGHQGEASYL--AWSPDGKRIASVSMS 309 Query: 368 GEKFAIGVMK-KDGSQERLL-----VEDSNLQAPTWSPSGRSLIFSRKKD------GDTG 415 + +++ ++ + RLL D ++ WSP G+ + S D TG Sbjct: 310 RRPYDDDIVQVREVANLRLLYAYQLASDYHVTGVAWSPDGKRIAISADPDLIQVWNAATG 369 Query: 416 SKLYSIDLNGRNETLINTPAYASD 439 ++S N TP ++ D Sbjct: 370 HPIFSY-YGASNGDRFTTPDWSPD 392 >gi|227113077|ref|ZP_03826733.1| hypothetical protein PcarbP_08950 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 370 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF 366 SPD S+I F D G QL+ + NG + +++++ + S F+ W P G +AF Sbjct: 257 SPDGSEIAFLMRDEAGVVQLWTLSPNGGEPRQVTRTEHGVQSAFN--WHPDGRSLAFVS- 313 Query: 367 SGEKFAIGVMKKDGSQERLLVE-DS--NLQAPTWSPSGRSLIFSRKKDG 412 + + K G RL DS + A +SP G+ + + R+ DG Sbjct: 314 --DNSIMLCEAKSGELVRLTARTDSAPSADAVVFSPDGKHIAYMREIDG 360 >gi|297183211|gb|ADI19351.1| dipeptidyl aminopeptidases/acylaminoacyl-peptidases [uncultured Chloroflexi bacterium HF0500_03M05] Length = 647 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 17/132 (12%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSNGSDQKR 340 +I+ V +LT ++ +SPD +VF SDR +G+ QLY++ G + + Sbjct: 48 NIWVVPTDGGDATQLTFGPRSDLCPRWSPDGQSLVFLSDRTEDGQRQLYLLPMYGGEAAQ 107 Query: 341 ISQDKEA-----SYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQE--------RL 385 ++ + + S WSP G IAF K E+ + M+KD + E R+ Sbjct: 108 LTTVEGSIPASRSVDTVAWSPDGRKIAFMKTDAETEQEKLRQMEKDDAIEFERNPKYTRI 167 Query: 386 LVEDSNLQAPTW 397 V D + Q +W Sbjct: 168 NVVDVDTQILSW 179 >gi|261213062|ref|ZP_05927346.1| protease-related protein [Vibrio sp. RC341] gi|260838127|gb|EEX64804.1| protease-related protein [Vibrio sp. RC341] Length = 1085 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 342 SQDKEASYFDPVW------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QA 394 +Q E SY P W SP G IAFT ++G+ I ++ G + L E + Sbjct: 29 NQQLEPSYSHPTWLRDIALSPNGQQIAFT-YAGQ---IWLVPAQGGEAIALTESGVYSEM 84 Query: 395 PTWSPSGRSLIFSRKKDGD 413 P WSP +SL FS + G+ Sbjct: 85 PVWSPDSQSLAFSANRYGE 103 >gi|160885691|ref|ZP_02066694.1| hypothetical protein BACOVA_03695 [Bacteroides ovatus ATCC 8483] gi|156108504|gb|EDO10249.1| hypothetical protein BACOVA_03695 [Bacteroides ovatus ATCC 8483] Length = 700 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYVYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKAFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++YS+ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYSVALDGSTTQL 420 >gi|332662646|ref|YP_004445434.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] gi|332331460|gb|AEE48561.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] Length = 1048 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 206 LTPSRDQILF--EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 T ++ + F P SP+ + +A D I +V R G+ R P Sbjct: 20 FTQDKNAVYFTDHPALSPDGNTLYFAYAGD--IWKVSAAGGLATRLTAMEGDER----FP 73 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK S Q+ D+Y + L+ +LT ++ S+S DS I F S R Sbjct: 74 RPSPDGKWLAFSAQQFGNTDVYLLPLEGGEIRQLTYHDANDLVCSWSWDSGFIYFTSGRY 133 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + Y + G R+ + + D P+G I F + Sbjct: 134 NRVSGYKVSVEGGTPMRMFPNYHHTVHDIAEHPRGGEIFFNE 175 >gi|157374478|ref|YP_001473078.1| peptidase S41 [Shewanella sediminis HAW-EB3] gi|157316852|gb|ABV35950.1| peptidase S41 [Shewanella sediminis HAW-EB3] Length = 1094 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 17/150 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD + SD G+++++ ++GS K++++D + SP G IA + G Sbjct: 363 SPDGQWVYGISDASGEQEIWQFPADGSQGAKQLTKDGKTLRMSLSVSPDGRYIASDDYDG 422 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP----TWSPSGRSLIFSRKKDGDTGSK--LYSID 422 + + +KK+ S+ +++ + L P WS R + ++ + G + LYS++ Sbjct: 423 NLWLLD-LKKNRSK-KIITQGEGL-GPYADVVWSGDSRFIAITKSELGKPRPQIVLYSLE 479 Query: 423 LNGRNETLIN------TPAYASDPQWVGFM 446 N R+ET+ + +PA++SD +W+ F+ Sbjct: 480 EN-RSETVTSDKYESYSPAFSSDGKWLYFL 508 >gi|115378689|ref|ZP_01465838.1| peptidase S9, prolyl oligopeptidase active site region [Stigmatella aurantiaca DW4/3-1] gi|115364310|gb|EAU63396.1| peptidase S9, prolyl oligopeptidase active site region [Stigmatella aurantiaca DW4/3-1] Length = 600 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 AS+SPD +I+F S+ G Y + G ++Q K S F + P+ + I +T+ Sbjct: 8 GASFSPDEKKILFSSNGSGIFNAYSVPVKGGTPTPLTQSKTDSTFAVSYFPKDERILYTR 67 Query: 366 FSG--EKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDT------- 414 G E + V DG +E+ L NL+A W S + + D Sbjct: 68 DQGGNENSHLYVRGLDG-KEKDLTPGDNLKALFAGWKEDDGSAFYVLSNERDARFFDLYK 126 Query: 415 -GSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 G+K Y L +NE + D +W+ Sbjct: 127 YGAKTYERTLLYQNEGNYMVAGISRDEKWIAL 158 >gi|91773689|ref|YP_566381.1| hypothetical protein Mbur_1741 [Methanococcoides burtonii DSM 6242] gi|91712704|gb|ABE52631.1| Hypothetical protein Mbur_1741 [Methanococcoides burtonii DSM 6242] Length = 559 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%) Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD +IVF + + ++ + +I + +D WSP + + F + SG Sbjct: 282 WSPDGEKIVF---IQNICNIIIVDIEKRELNQIYSAEHVGMYDAQWSPDSNKLIFYEISG 338 Query: 369 EKFAIGVMKKD--------GSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + G + D G+ E++ V DS + + W P L+ ++ D DT + LY Sbjct: 339 SE-EDGTLNYDIYAINDSGGNPEKIAVFDSGSSRVIQWYPDSEKLLVKKRSDDDTYA-LY 396 Query: 420 SIDLNGRNETLI 431 S+ + G+ LI Sbjct: 397 SLSIIGKMGKLI 408 >gi|237719462|ref|ZP_04549943.1| prolyl oligopeptidase [Bacteroides sp. 2_2_4] gi|229451322|gb|EEO57113.1| prolyl oligopeptidase [Bacteroides sp. 2_2_4] Length = 700 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYVYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKAFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++YS+ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYSVALDGSTTQL 420 >gi|153938451|ref|YP_001391233.1| putative lipoprotein [Clostridium botulinum F str. Langeland] gi|152934347|gb|ABS39845.1| putative lipoprotein [Clostridium botulinum F str. Langeland] gi|295319269|gb|ADF99646.1| putative lipoprotein [Clostridium botulinum F str. 230613] Length = 357 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 20/157 (12%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVM 331 S+Q E M IY DL++ ++ + + ++ S + +I++ S++E K ++Y Sbjct: 139 SLQSAEGMKIY--DLENKKEIKIKSDVLVSGSLFKWLNEDEILYYGINSEKENKAKIY-- 194 Query: 332 QSNGSDQKRISQDKEASYFDPV------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++KE Y D + + P GD + G+KF++ K + + Sbjct: 195 ------KYNVKENKEEVYVDNIEGICTYFMPNGDNVLLLSRQGDKFSLSYYNKKDNSFKK 248 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + E+ N Q + S +++ F K D + LY ID Sbjct: 249 ISEEVN-QVYKGTKSTKNMYFLGKNDLENKDYLYKID 284 >gi|310820170|ref|YP_003952528.1| peptidase, s9 prolyl oligopeptidase [Stigmatella aurantiaca DW4/3-1] gi|309393242|gb|ADO70701.1| Peptidase, S9 prolyl oligopeptidase [Stigmatella aurantiaca DW4/3-1] Length = 645 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 AS+SPD +I+F S+ G Y + G ++Q K S F + P+ + I +T+ Sbjct: 53 GASFSPDEKKILFSSNGSGIFNAYSVPVKGGTPTPLTQSKTDSTFAVSYFPKDERILYTR 112 Query: 366 FSG--EKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDT------- 414 G E + V DG +E+ L NL+A W S + + D Sbjct: 113 DQGGNENSHLYVRGLDG-KEKDLTPGDNLKALFAGWKEDDGSAFYVLSNERDARFFDLYK 171 Query: 415 -GSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 G+K Y L +NE + D +W+ Sbjct: 172 YGAKTYERTLLYQNEGNYMVAGISRDEKWIAL 203 >gi|223995029|ref|XP_002287198.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976314|gb|EED94641.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1043 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 25/217 (11%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG-NFRSMILAPRFS 266 P I ++ P Q +A + + V + +T R PK + +S +LA FS Sbjct: 686 PLEGGIPLCAKWHPKDQYLAISG----QLKNVVVYETSCRRLPKGMCLRSKSTVLAVEFS 741 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-----INISASYS-------PDSS 314 NGK +I+V + + + D S A L T+ I I S S S+ Sbjct: 742 PNGK--IIAVGNETGLVTF-FDATSTAFVTLFETVIGVGKDITIQWSSSGRNVAIASGST 798 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++F++ GK ++ S+ +++ Q ++ +SP+GD IA T ++ I Sbjct: 799 FVLFDTIFCGKVGVHPASSSRFLVRKVIQGG-VNFTSLAFSPKGDYIALTD---DQTRIL 854 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +K D S R+L + N+ + WSP G + K+D Sbjct: 855 NIKDDCSCVRVL-DQQNVLSSGWSPDGAAFALVGKRD 890 >gi|298482873|ref|ZP_07001056.1| prolyl oligopeptidase family protein [Bacteroides sp. D22] gi|298271073|gb|EFI12651.1| prolyl oligopeptidase family protein [Bacteroides sp. D22] Length = 700 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYIYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKTFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++YS+ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYSVALDGSTTQL 420 >gi|293370213|ref|ZP_06616773.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides ovatus SD CMC 3f] gi|292634710|gb|EFF53239.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides ovatus SD CMC 3f] Length = 693 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 262 DIYVYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 321 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 322 EKRFVSKAFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 372 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++YS+ L+G L Sbjct: 373 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYSVALDGSTTQL 413 >gi|262198502|ref|YP_003269711.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262081849|gb|ACY17818.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1684 Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 102/227 (44%), Gaps = 14/227 (6%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 SV++ + +S V + +GA + + FSP+ ++VA A+ D RV+ + Sbjct: 1064 SVLTASVDHSARVWNANGAGEPLVLEGHTDEVVSAVFSPDGERVATASADGR--ARVWSV 1121 Query: 243 DTRIDRAPKRIG--NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + K + + A FS +G+R +++ D ++S D A ++ Sbjct: 1122 RAVVAGRAKSVTLRGHTGPVRAVAFSPDGER-VVTASADGTARVWSADGTGAAVVLRGHS 1180 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I + S+SPD ++V S +G +++ ++GS + + + + D +SP G+ Sbjct: 1181 DQIR-AVSFSPDGERVVTAS-ADGTARVW--SADGSGEPVVLRGHQGWVVDVCFSPDGER 1236 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 +A F + V DGS E +++ ++ + +SP G ++ Sbjct: 1237 VATASFDN---SARVWLADGSGEPVVLAGHTQSVASVRFSPEGERVV 1280 >gi|299146181|ref|ZP_07039249.1| prolyl oligopeptidase family protein [Bacteroides sp. 3_1_23] gi|298516672|gb|EFI40553.1| prolyl oligopeptidase family protein [Bacteroides sp. 3_1_23] Length = 700 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYIYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKTFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++YS+ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYSVALDGSTTQL 420 >gi|302816734|ref|XP_002990045.1| hypothetical protein SELMODRAFT_160579 [Selaginella moellendorffii] gi|300142165|gb|EFJ08868.1| hypothetical protein SELMODRAFT_160579 [Selaginella moellendorffii] Length = 603 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 F + + SPD+ V D++GK L+ + +G Q+ + + AS +SP G + Sbjct: 445 FTATAVAVSPDAKAAVV-GDKDGKLHLFSLGEDGLHQEALLERHRASVTALEFSPDGTMF 503 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 A + E F +K++ + +L +++Q W+ Sbjct: 504 ASGDQNREAFVWDAVKREVKLKNMLYHTTSIQCIAWA 540 >gi|312130675|ref|YP_003998015.1| peptidase s9 prolyl oligopeptidase active site domain protein [Leadbetterella byssophila DSM 17132] gi|311907221|gb|ADQ17662.1| peptidase S9 prolyl oligopeptidase active site domain protein [Leadbetterella byssophila DSM 17132] Length = 709 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%) Query: 284 IYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFES--------DREGKEQLYVMQSN 334 ++ ++++ NA R + F + + A+Y+PD I + DRE + ++ +Q + Sbjct: 234 LFEIEVKENAQARALTSGFASYNGANYAPDGRSIFVSTAKDADEHPDRESENKIVQIQLS 293 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----AIGVMKKDGSQERLLVEDS 390 QK I E ++ SP G A T SG + ++ DGSQ + + D Sbjct: 294 DLSQKVILSKNETAFRGFSLSPSGKKAA-TVISGTNGLSYGKLAIVNSDGSQLKEIDFDR 352 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 W+P + L F+ + +G GS ++ ++L+ Sbjct: 353 VPSGFNWTPDEKFLYFTAQSNG--GSPIFRLELS 384 >gi|163840760|ref|YP_001625165.1| acylamino-acid-releasing enzyme [Renibacterium salmoninarum ATCC 33209] gi|162954236|gb|ABY23751.1| acylamino-acid-releasing enzyme [Renibacterium salmoninarum ATCC 33209] Length = 677 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 10/130 (7%) Query: 260 ILAPRFSSNGKRALISVQK-DEAMDIYSVDL------QSNATERLTNTLFINISASYSPD 312 + AP G A+++V + D D Y L S++ R T F + + YSPD Sbjct: 19 VSAPTLHPEGVTAIVAVSRADFDADSYVGQLWQFSTDDSSSPRRFTRG-FRDSAPQYSPD 77 Query: 313 SSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + + F GK Q++++ + G + + I+ D++ S + WSP G+ I F E+ Sbjct: 78 GAVLAFMRSAPGKAGQIHIVDARGGEPQTIT-DRKLSVNEFSWSPGGNQIVFAAAVPEEG 136 Query: 372 AIGVMKKDGS 381 G + G+ Sbjct: 137 RYGTIDGVGA 146 >gi|332829074|gb|EGK01738.1| hypothetical protein HMPREF9455_01886 [Dysgonomonas gadei ATCC BAA-286] Length = 693 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 12/143 (8%) Query: 310 SPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD S++++ E ++ +E L+ M +GSD+K+I+Q ++ + VW G IA Sbjct: 59 SPDKSKVLYGVTYVSIEQNKTNRE-LFTMNIDGSDKKQITQTAKSEN-NAVWIKGGSKIA 116 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK-KDGDTGSKLYS 420 F I M DG++ + E + + ++SP + +++ + K G+ + Y Sbjct: 117 FLSSESGSSQIWEMNPDGTERMQISEIEGGVNGFSYSPDEKKILYIKNIKFGERTADKYP 176 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 DL + +I+ Y +WV Sbjct: 177 -DLPKASGRIIDDLMYKHWSEWV 198 >gi|18312539|ref|NP_559206.1| tricorn protease [Pyrobaculum aerophilum str. IM2] gi|18160005|gb|AAL63388.1| tricorn protease [Pyrobaculum aerophilum str. IM2] Length = 1016 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%) Query: 276 VQKDEAMDIYSVDLQSNAT---ERLTNTLFINISASYSPDSSQIVF----ESDREGKEQL 328 + DE + + DL A +RLT+ + + +SPD I F ++D+ + Sbjct: 10 IYGDEIIFVTEDDLWKYAKGIGQRLTSDFGVVLKPKFSPDGKWIAFTRLQQTDQGTTADV 69 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQ 382 YV+ S G + KRI+ W+P G ++ ++ F E +AI + DG Sbjct: 70 YVVPSEGGEPKRITYFGTPFTRVVGWTPDGRVLVYSDFKTPFPQWRELYAISL---DGIY 126 Query: 383 ERL 385 ERL Sbjct: 127 ERL 129 >gi|237751471|ref|ZP_04581951.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229372837|gb|EEO23228.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 428 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 66/368 (17%), Positives = 153/368 (41%), Gaps = 21/368 (5%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +++ +DL+ FN+ D+ K I + QD+ + + K+G L Sbjct: 57 IYKMLVQDLKTLGHFNVYYDDTLKTDILQNN--LALQDYKNKNMNFIAQVSQKKKGGS-L 113 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 L++ K I + + IAH ++ + I D+ +R + S V Sbjct: 114 IATLSLYEYASGKTITTEYREDEIERYPFIAHAMASYLNDYIKAPNADWLNRYVVFSNYV 173 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 SG ++++ + D + + + + P+++ ++Q+ Y T + +Y + Sbjct: 174 GSG--RSNILIADYTFTYQKTIISNGLNMF--PKWADSKQEEFYYTLVTHEA-TIYKYNM 228 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + K I + + M + S +G + L+S+ DI+ +++S +LT I+ Sbjct: 229 YSGKNEKVISS-QGMAVVSDVSKHGDKLLLSLAPVGLSDIFLYEIKSKKLTQLTRYSGID 287 Query: 305 ISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++A ++ + VF SDR G +++ + N + + + + + S S G I Sbjct: 288 VNAHFTNNEKSFVFVSDRLGYPNIFMQDLMPNANVTQIVFKGRNNS----TLSTFGQYIV 343 Query: 363 FTKFSGEK------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 ++ ++ F + ++ R L + + P +S G S++F R++ + Sbjct: 344 YSSRESDEETGLNVFNLYLVSAHSDYVRRLSKIGTNRIPAFSHDGDSIMFLRQQKNEQAI 403 Query: 417 KLYSIDLN 424 + + +N Sbjct: 404 GIIRLSIN 411 >gi|261819407|ref|YP_003257513.1| hypothetical protein Pecwa_0037 [Pectobacterium wasabiae WPP163] gi|261603420|gb|ACX85906.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163] Length = 428 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF 366 SPD +I F D G QL+ + NG + ++++ + S F+ W P G +AF Sbjct: 313 SPDGGEIAFLMRDEAGVAQLWAISPNGGEPRQVTHTEHGVQSAFN--WHPDGRSLAFVC- 369 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDG 412 + + K G R+ N A +SP G+ + + R+ DG Sbjct: 370 --DNSIMLCDAKSGELVRMTARTDNAPSADAVVFSPDGKHIAYMREIDG 416 >gi|237714507|ref|ZP_04544988.1| prolyl oligopeptidase [Bacteroides sp. D1] gi|262406372|ref|ZP_06082921.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643252|ref|ZP_06721078.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides ovatus SD CC 2a] gi|294806445|ref|ZP_06765286.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445276|gb|EEO51067.1| prolyl oligopeptidase [Bacteroides sp. D1] gi|262355075|gb|EEZ04166.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641375|gb|EFF59567.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides ovatus SD CC 2a] gi|294446308|gb|EFG14934.1| peptidase, S9A/B/C familie, catalytic domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 700 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYVYDLNTQKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKAFESNVDAFVWGADAKMIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++Y++ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYTVALDGSTTQL 420 >gi|322437538|ref|YP_004219628.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX9] gi|321165431|gb|ADW71134.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX9] Length = 501 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 18/188 (9%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT--LFINISASYSPDSSQIVFESD- 321 +++G R L SV D + ++ + + +L L N S D S+++ S Sbjct: 238 LATDGDRILTSVSVDGRPRLSAIYISTGEVHKLATPKELSSNSLEDISKDGSKLLLRSQL 297 Query: 322 -REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 E ++ L+V S G RI D W P G I + + + ++ DG Sbjct: 298 SSESEQPLWVTPSAGGSGLRIGNVLAQ---DATWMPDGVSILYANGND----LYTVQADG 350 Query: 381 SQERLLVEDSNLQAPT----WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 +L + LQ WSP GR L F+ + LY ++ R + P Sbjct: 351 GSSKLY---ATLQGRAFWMRWSPDGRLLRFTLVDPVTHSTNLYELEAGSRTARPVRLPGL 407 Query: 437 ASDPQWVG 444 P G Sbjct: 408 TPQPACCG 415 >gi|253686441|ref|YP_003015631.1| hypothetical protein PC1_0032 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753019|gb|ACT11095.1| conserved hypothetical protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 434 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF 366 SPD S+I F D G QL+ + NG + ++++ + S F+ W P G +AF Sbjct: 321 SPDGSEIAFLMRDEAGVVQLWTISPNGGEPRQVTHTEHGVQSAFN--WHPDGRSLAFVC- 377 Query: 367 SGEKFAIGVMKKDGSQERLLVE-DS--NLQAPTWSPSGRSLIFSRKKDG 412 + + K G RL DS + A +SP G+ + + R+ DG Sbjct: 378 --DNSIMLCEAKSGELVRLTARTDSAPSADAVVFSPDGKHIAYMREIDG 424 >gi|326798425|ref|YP_004316244.1| peptidase S41 [Sphingobacterium sp. 21] gi|326549189|gb|ADZ77574.1| peptidase S41 [Sphingobacterium sp. 21] Length = 1074 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 9/133 (6%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F S G + V S G + I+ + S P++SP G +AF Sbjct: 55 SPDGQEIAFVS---GGDIWTVSASGGEARLLIAHPAQDS--RPLYSPDGSQLAFVSTRTG 109 Query: 370 KFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGR 426 I V+ DG RL ++ + WS G+ L+F GD S ++ I ++G Sbjct: 110 NGDIYVLSLSDGKLRRLTYDEGPEELSGWSADGKYLLF-HSNTGDIASMYDIWKIPIDGG 168 Query: 427 NETLINTPAYASD 439 ++ YA++ Sbjct: 169 TPMPVSADRYATE 181 >gi|189466155|ref|ZP_03014940.1| hypothetical protein BACINT_02525 [Bacteroides intestinalis DSM 17393] gi|189434419|gb|EDV03404.1| hypothetical protein BACINT_02525 [Bacteroides intestinalis DSM 17393] Length = 702 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 16/108 (14%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGD 359 SPD QI + + + +++VM ++G+ ++I+ Q+ E + W G Sbjct: 61 SPDEKQIAYTVAYYSVPENKSNREVFVMNTDGTGNQQITRTPWQENEVN-----WIKGGT 115 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 +AF G + M DGS + L + D +++ ++SP G+ L+F Sbjct: 116 KLAFLSNEGGSSQLWEMNPDGSGRKQLTQYDGDIEGYSFSPDGKKLLF 163 >gi|119472121|ref|ZP_01614352.1| Dipeptidyl peptidase IV [Alteromonadales bacterium TW-7] gi|119445141|gb|EAW26434.1| Dipeptidyl peptidase IV [Alteromonadales bacterium TW-7] Length = 741 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R +RI F IL +S++GK L + D +Y DL S +++LTNT A Sbjct: 103 RERQRI--FGKGILEYTWSTDGKALLFPLNGD----LYYYDLASAKSKKLTNTDAFETDA 156 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 +SP + + F + + LY + N + ++SQD Sbjct: 157 RFSPKGNYVSFIRE----QNLYALALNSGKEIQLSQD 189 >gi|222479016|ref|YP_002565253.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451918|gb|ACM56183.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 628 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 284 IYSVDLQSNATERLTNTLFINISASY---SPDSSQIVFESDREGKE--QLYVMQSNGSDQ 338 ++S+D E+ T F S S+ SP+ ++ VF D G E QLY++ + Sbjct: 38 VWSLDEPLGWPEQHT---FFEESVSFVDSSPERAEAVFGMDEGGNERAQLYLLNYESGEI 94 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKD---GSQERLLVEDSNLQ 393 ++ EA + W +GD AF + F I V +D G E + D L Sbjct: 95 TDLTDRPEAKHRWGGWDSEGDRFAFASNRRDTSVFDIYVQDRDAIGGDAELVYEGDGWLS 154 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP----AYASDPQW 442 WSPS LI + +Y++DL + +TP A P+W Sbjct: 155 VAGWSPSDDRLIV-HEAHSSFDHDVYTLDL-ATGDLTHHTPHQRDARYGSPEW 205 >gi|9107416|gb|AAF85059.1|AE004038_8 alanyl dipeptidyl peptidase [Xylella fastidiosa 9a5c] Length = 709 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 38/220 (17%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SA 307 AP R+ + AP FS +GK K + +Y + + + +LTN L ++I S Sbjct: 98 APVRLTPLGWDVSAPVFSRDGKAVYFLSAKSGSHQLYVLPVSGGTSRQLTN-LAVDIDSY 156 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSD----QKRISQDKEA--------SYFDPVWS 355 SP +IVF + V Q GSD ++++ + K A F W Sbjct: 157 KLSPQGDRIVFSAG--------VFQVCGSDLSCTKRKLDEKKNAKASGVVFEQLFVRHWD 208 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP--------TWSPSGRSLIFS 407 D T F A+G + D ++ + WSP G S++ S Sbjct: 209 TWNDGRRNTLFIASLPAVGAKPVSVVSAMSAMLDGDVPSKPFGGADHFVWSPDGHSVVAS 268 Query: 408 -----RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 R++ T LY D++G + + T A++P W Sbjct: 269 IRVAGRQEPWSTNFDLYRFDVSGHDAPVNLT---AANPAW 305 >gi|209522641|ref|ZP_03271199.1| WD-40 repeat protein [Arthrospira maxima CS-328] gi|209496690|gb|EDZ96987.1| WD-40 repeat protein [Arthrospira maxima CS-328] Length = 1178 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 39/247 (15%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM---ILAPRFS 266 DQ + SP+ + +A +++D+ +R++ M+ + K I N SM LA FS Sbjct: 906 HDQGVIGLAVSPDGEILATSSWDES--IRLWNMEGEL---LKVINNAHSMGGNQLA--FS 958 Query: 267 SNGKRALISVQKDEAMDIYS----VDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 NG+ + SV D + ++S + +E +T F SPD +V S+ Sbjct: 959 PNGE-VIASVGNDNKVKLWSRVGEFLREWEYSESITGIAF-------SPDGKMVVTGSED 1010 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +Y+ +GS + I + + S + +SPQGD+IA + + DG + Sbjct: 1011 TEVRVVYI---DGSGTRLIG-NHQGSVWGVAFSPQGDMIASASTDN---TLRLWFLDGRE 1063 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG------DTGSKLYSIDLNGRNETLINTPAY 436 +L + +SP G+ +I S DG + G K+ ++ R++ + T A+ Sbjct: 1064 PIVLHHQGTVDKVAFSPDGQ-MIASASWDGTIQLWTNEGVKIRTLI---RHQGSVRTVAF 1119 Query: 437 ASDPQWV 443 ++D +W+ Sbjct: 1120 SNDGKWM 1126 >gi|163848036|ref|YP_001636080.1| WD40 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525923|ref|YP_002570394.1| WD40 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669325|gb|ABY35691.1| WD40 domain protein beta Propeller [Chloroflexus aurantiacus J-10-fl] gi|222449802|gb|ACM54068.1| WD40 domain protein beta Propeller [Chloroflexus sp. Y-400-fl] Length = 329 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +G++QL+ + +N Q +DP SP G + F + M +G Sbjct: 201 DGQQQLFRISNN---QATPLPGAPTPAYDPALSPDGTWLVFAVGINGGSDLYAMPANGGS 257 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 L + + ++P ++P G++L F G G LY ++ +TL +P Sbjct: 258 PIRLTDIGSARSPAFAPDGKTLAFLAIPPGGRGFDLYLAEVAIAGDTLQLSP 309 >gi|114775410|ref|ZP_01450978.1| translocation protein TolB precursor [Mariprofundus ferrooxydans PV-1] gi|114553521|gb|EAU55902.1| translocation protein TolB precursor [Mariprofundus ferrooxydans PV-1] Length = 363 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y +D +S + N + SPD +++F + +G L++ + NG + +++ Sbjct: 215 LYILDRKSGDLTMIPNAF----DGTISPDGRKVIFVRETKGNYDLWMQEINGGELVQLT- 269 Query: 344 DKEASYFDPVWSPQGDLIAF 363 D F+P WSP G + F Sbjct: 270 DSPFGDFEPAWSPDGSRVLF 289 >gi|206889573|ref|YP_002249100.1| hypothetical protein THEYE_A1286 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741511|gb|ACI20568.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 417 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 33/175 (18%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L+ R S +++K+A D + + +R F +L P+FS +GK+ Sbjct: 267 LWNQRVSTDKKKIAAVVATDFGKWTIAVDGIPWNRT------FSQAVLPPQFSPDGKKVA 320 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 V+++ ++V + +R ++ S +SPDSS I+ ++++EG +Y + Sbjct: 321 AVVRENNQ---WTVAVDGIPWKRGFERVW---SPQFSPDSSHIITKAEKEG---VYFIVL 371 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLL 386 +G I +D FD +W PQ FS GEK + +K ++L Sbjct: 372 DG----EIGKDT----FDILWEPQ--------FSPDGEKILVRCIKNGRYYRKIL 410 >gi|116620550|ref|YP_822706.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223712|gb|ABJ82421.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 851 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 6/128 (4%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ K+AY DI +Y P+ + ++ +GK + + Sbjct: 628 PVWSPDGAKLAYFARQG-DIYDIYSRSALPGSRPELLLKSDVNKYPTDWTHDGKYLIYGL 686 Query: 277 Q-KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ--- 332 + +D++ + + + + +T+F AS SPD + ++SD+ G+ ++YV Q Sbjct: 687 TGRGTHLDVWGLAVGDRRSAPILDTVFSEGFASVSPDGKWLAYQSDQSGRTEVYVQQFDG 746 Query: 333 -SNGSDQK 339 SNG+ ++ Sbjct: 747 LSNGTKRR 754 >gi|116621582|ref|YP_823738.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224744|gb|ABJ83453.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 898 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 34/282 (12%) Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F + S +T PD++ R +D++ QVL GR + + K Sbjct: 469 SGLFQVDSSGGTPVPLTTPDAM-RGEDFHYW-PQVLPEGRFLYFARSS----------KP 516 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + F++P ++ HT+++ +Y G +L++ S +L Sbjct: 517 EYTGVYAASFAAPNKPVQLLHTLTNAVYAP--GASDRKKGHLLWLQGS--------TLVA 566 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR-----IDRAP 250 D A +R R + +P S A D IL +++ D Sbjct: 567 QAFDAAALRLSGEPRP--VADPVASLGLHGQMVAAASDTGILLYRASNSQSQFVWYDPTG 624 Query: 251 KRIGNFRSMILAPRFS--SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + I F + +FS ++G+R + +D+++V++ + RLT+ I+IS + Sbjct: 625 RLIAPFAEPAVFGQFSISTDGRRVATARAGSGGVDLWTVEVDRGVSTRLTSLPGISISPA 684 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASY 349 +S D S I F S LY S G+ ++R++Q + Sbjct: 685 WSSDGSAIFFASGS--PFNLYRKDSIGAGPEQRLTQSPHPQF 724 >gi|77747590|ref|NP_299539.2| alanyl dipeptidyl peptidase [Xylella fastidiosa 9a5c] Length = 688 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 38/220 (17%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SA 307 AP R+ + AP FS +GK K + +Y + + + +LTN L ++I S Sbjct: 77 APVRLTPLGWDVSAPVFSRDGKAVYFLSAKSGSHQLYVLPVSGGTSRQLTN-LAVDIDSY 135 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSD----QKRISQDKEA--------SYFDPVWS 355 SP +IVF + V Q GSD ++++ + K A F W Sbjct: 136 KLSPQGDRIVFSAG--------VFQVCGSDLSCTKRKLDEKKNAKASGVVFEQLFVRHWD 187 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP--------TWSPSGRSLIFS 407 D T F A+G + D ++ + WSP G S++ S Sbjct: 188 TWNDGRRNTLFIASLPAVGAKPVSVVSAMSAMLDGDVPSKPFGGADHFVWSPDGHSVVAS 247 Query: 408 -----RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 R++ T LY D++G + + T A++P W Sbjct: 248 IRVAGRQEPWSTNFDLYRFDVSGHDAPVNLT---AANPAW 284 >gi|226226759|ref|YP_002760865.1| prolyl oligopeptidase family protein [Gemmatimonas aurantiaca T-27] gi|226089950|dbj|BAH38395.1| prolyl oligopeptidase family protein [Gemmatimonas aurantiaca T-27] Length = 748 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Query: 283 DIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDRE------GKEQLYVMQSNG 335 D+Y +D Q N+ ERLTN + SA S+SPDS I F + + ++Y+ + Sbjct: 288 DVYLLDTQDNSVERLTNNEENSESALSFSPDSKTIAFSASDDMTRFNMKNRRVYLRDAAA 347 Query: 336 SDQK-RISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDGSQ 382 Q R D + + W+P G I F+ K + + FA+ V +Q Sbjct: 348 KGQAFRKLGDYDGDHSVNFWAPDGRTIYFSTGAKATTQLFALDVASGKTTQ 398 >gi|269836688|ref|YP_003318916.1| hypothetical protein Sthe_0657 [Sphaerobacter thermophilus DSM 20745] gi|269785951|gb|ACZ38094.1| hypothetical protein Sthe_0657 [Sphaerobacter thermophilus DSM 20745] Length = 481 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%) Query: 298 TNTLFINISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + L + + ++SPD ++ +SD+ + L + +GS +RI + DP W+P Sbjct: 357 AHVLNLKLRIAWSPDGQRVALVQSDQNARPLLLLFDRDGSLVQRIPLGPDGWVVDPQWTP 416 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW------SPSGRSLIFS 407 +L+ + + V+ D +V D L P W SP+G LI + Sbjct: 417 DSELLFLQTYPANGRRLVVVDADSG----VVYD--LSQPGWHASGSLSPAGDRLIVT 467 >gi|255009563|ref|ZP_05281689.1| putative exported aminopeptidase [Bacteroides fragilis 3_1_12] Length = 694 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 35/60 (58%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ ++ ++T+T F +++ D S+++F S+ G QLY M +GS +K+IS Sbjct: 76 EVFVMNADGTDNRQITHTPFQENEVTWATDGSKLLFLSNDNGSSQLYEMNPDGSGRKQIS 135 >gi|254515673|ref|ZP_05127733.1| peptidase S9, prolyl oligopeptidase active site domain protein [gamma proteobacterium NOR5-3] gi|219675395|gb|EED31761.1| peptidase S9, prolyl oligopeptidase active site domain protein [gamma proteobacterium NOR5-3] Length = 696 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ---APTWSPSGRSLIFSR 408 WSP G + F G IGV D Q ++ ++ +PTWSP GR L F R Sbjct: 186 AWSPDGSRLLFRSNRGTHSYIGVWTPDDGQGEIVWLSPSVDRDLSPTWSPDGRQLAFLR 244 >gi|94971417|ref|YP_593465.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] gi|94553467|gb|ABF43391.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] Length = 915 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 11/133 (8%) Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 TL+ N S D +++ F + ++G+ ++V + + ++ E F P WSP G Sbjct: 373 TLYRNGPPELSSDGTRVAFVARKDGQNSIWVRSLDKLEATQVQGTAEG--FRPFWSPDGT 430 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 +AF F+ K + + +G + + + TW +G +++F+ +TG L Sbjct: 431 SLAF--FAHAK--LWRVDLNGVAPVAIADAPEGRGGTWG-AGNTIVFAP----NTGGPLM 481 Query: 420 SIDLNGRNETLIN 432 +D G T + Sbjct: 482 EVDAAGGAATPVT 494 >gi|313147339|ref|ZP_07809532.1| prolyl oligopeptidase [Bacteroides fragilis 3_1_12] gi|313136106|gb|EFR53466.1| prolyl oligopeptidase [Bacteroides fragilis 3_1_12] Length = 702 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 35/60 (58%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ ++ ++T+T F +++ D S+++F S+ G QLY M +GS +K+IS Sbjct: 84 EVFVMNADGTDNRQITHTPFQENEVTWATDGSKLLFLSNDNGSSQLYEMNPDGSGRKQIS 143 >gi|326799767|ref|YP_004317586.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphingobacterium sp. 21] gi|326550531|gb|ADZ78916.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphingobacterium sp. 21] Length = 736 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+SP S I+F +GK QL++M +G + +++ K + P WSP G I F+ Sbjct: 114 SFSPRGSDILFVRTVKGKPQLFLMSLSGGEPMQLTDFKYGAS-SPKWSPDGKKIVFS 169 >gi|83859759|ref|ZP_00953279.1| hypothetical protein OA2633_07159 [Oceanicaulis alexandrii HTCC2633] gi|83852118|gb|EAP89972.1| hypothetical protein OA2633_07159 [Oceanicaulis alexandrii HTCC2633] Length = 658 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSG 368 SPD S+ F G+ QL++M + G R++ ++F W+P GD LI G Sbjct: 73 SPDGSRAAFRWSITGEPQLWIMDAEGGQPTRLTYGNGITFFR--WTPDGDSLIYGADNDG 130 Query: 369 -EKFAIGVMKKDGSQERLL--VEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 E+ A + G E + ED + + G++++F+ + +Y+ DL Sbjct: 131 NEQEAYYRISAVGLHEDQVFPAEDGAFRVFGDFGADGQTIVFASTARNNLDFDIYTADLE 190 Query: 425 GRNETLINTPAYASDP 440 +++ +YA+ P Sbjct: 191 TGERSMVYEGSYANYP 206 >gi|262194656|ref|YP_003265865.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078003|gb|ACY13972.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1607 Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 25/237 (10%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V + DG + D ++ RFSP+ ++A A++D +R++ D + + + Sbjct: 1170 VWNTDGTGTPLVLRGHDDEIYAVRFSPDGTRIASASWD--KTIRIWNADGTGE--ARVLR 1225 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL----TNTLFINISASYS 310 + + FS +G LIS +D + ++ ++ +S A L N L + +SA Sbjct: 1226 GHAAALYGVDFSPDGS-FLISASEDTTLRLWPLN-RSGAPLILRGHDANILKVRLSA--- 1280 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D S++ S +G +++ ++G+D + + + D +SP G I F Sbjct: 1281 -DGSRVASASS-DGTVRIW--NTDGTDSPVVLRGHQGPVTDAAFSPDGTRIVSASFDK-- 1334 Query: 371 FAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I + DG+ +++ D + A ++SP G ++ D +L++ D G Sbjct: 1335 -TIRIWSADGTGPPVILHGHDDRVLAASFSPDGTRIV---SASWDATVRLWNADGTG 1387 >gi|262194516|ref|YP_003265725.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262077863|gb|ACY13832.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1190 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ +VA A+YD + L AP + +L+ FS +G R L S K Sbjct: 988 FSPDGARVASASYDRT----ILLWSADGVGAPTVLRGHEDAVLSVNFSPDGTR-LASASK 1042 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--------DREGKEQLYV 330 D ++ +++ D + + N SAS+SPD S++V + + +G + V Sbjct: 1043 DGSVRVWNTDGAGASRIAGKHEAGTN-SASFSPDGSRVVSAAQDATVRVWNADGSGEPVV 1101 Query: 331 MQSNG--SDQKRISQD 344 ++++G Q R S D Sbjct: 1102 LRNHGDWDTQARFSPD 1117 >gi|228470535|ref|ZP_04055394.1| prolyl oligopeptidase family protein [Porphyromonas uenonis 60-3] gi|228307758|gb|EEK16729.1| prolyl oligopeptidase family protein [Porphyromonas uenonis 60-3] Length = 665 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 11/125 (8%) Query: 293 ATERLTNTLFINI----SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRIS 342 T+++T + + + S + +P+ Q+V+ D + +Y++ S+G+ + ++ Sbjct: 6 GTKQMTPEMLLTMPRVGSYALAPNGKQVVYNVSQPSIKDNNSRTSIYLINSDGTGRTELT 65 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S + P WS G I F + + + + DG++ +L D + +SP Sbjct: 66 APSAGSEYTPRWSRDGKQIYFMRGTDQGMQLFARTLSDGAERQLTAIDGGIVDYRFSPDE 125 Query: 402 RSLIF 406 ++L++ Sbjct: 126 KTLLY 130 >gi|75909181|ref|YP_323477.1| WD-40 repeat-containing protein [Anabaena variabilis ATCC 29413] gi|75702906|gb|ABA22582.1| WD-40 repeat-containing protein [Anabaena variabilis ATCC 29413] Length = 1367 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 38/225 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ Q++ A+ D L D + R + +++ + FS +G+R +++ Sbjct: 1025 FSPDGQRILTASPDKT----ARLWDLQ-GRQIAELQGHENVVSSATFSPDGQR-ILTASP 1078 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN---- 334 D+ ++ DLQ L SA +SPD +I+ SD + +L+ +Q Sbjct: 1079 DKTARLW--DLQGRQIAELQGHKGWLFSAIFSPDGQRILTASD-DKTARLWDLQGRQIAE 1135 Query: 335 ------------GSDQKRI---SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI--GVMK 377 D +RI S D A +W+ QG IA KF G K + Sbjct: 1136 LGHKGWLFSATFSPDGQRILTASSDSTAR----LWNLQGREIA--KFQGHKNLVISASFS 1189 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 DG +R+L S+ A W GR + + +GD + ++S D Sbjct: 1190 PDG--QRILTASSDKTARLWELQGREIAKFQGHEGDVITAIFSPD 1232 Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 35/229 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 LF FSP+ Q++ A+ D L D + + K G+ S+I A FS +G+R + Sbjct: 856 LFSATFSPDGQRILTASSDKT----ARLWDLQGRQIAKFQGHENSVISAT-FSPDGQR-I 909 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--------DREGK 325 +++ D+ ++ DLQ L SA++SPD +I+ S D +G+ Sbjct: 910 LTLSVDKTARLW--DLQGRQIAELQGHEDWVNSATFSPDGQRILTASSDKTARLWDLQGR 967 Query: 326 EQLYVMQSN---------GSDQKRI---SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 Q+ +Q + D +RI S+D+ A +W+ QG IA KF G + + Sbjct: 968 -QIAELQGHEDWVNSATFSPDGQRILTASRDETAR----LWNLQGWQIA--KFQGHENVV 1020 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +R+L + A W GR + + + S +S D Sbjct: 1021 SSATFSPDGQRILTASPDKTARLWDLQGRQIAELQGHENVVSSATFSPD 1069 >gi|229514560|ref|ZP_04404021.1| protease-related protein [Vibrio cholerae TMA 21] gi|229348540|gb|EEO13498.1| protease-related protein [Vibrio cholerae TMA 21] Length = 1084 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 >gi|332877940|ref|ZP_08445678.1| WD40-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684235|gb|EGJ57094.1| WD40-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 328 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 23/219 (10%) Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL--QSNATERL 297 Y+ + R+ + IG F + IL S++G + ++ +I+ DL Q ++ ++ Sbjct: 50 YVCMPEVKRSNRGIGWFSNRIL--DISTDGSQIAYLSFRNNTTNIFIKDLSKQGSSIQKT 107 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWS 355 T ++ S YSPD QIVF R Q++ +D+ + + + D P++S Sbjct: 108 NRTAVLDFS--YSPDGKQIVFSEARGKTNQIF---QTSADKGFVCRQITSGNMDYSPIYS 162 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 LI F + E +I + D Q L S P + G + + Sbjct: 163 ADMKLIFFAR--QENKSISIWSHD-MQNNFLANYSQGLNP-YPVKGEPAFICVRPNAAGH 218 Query: 416 SKLYSIDL-NGRNETLIN-------TPAYASDPQWVGFM 446 S+++ ++ G E +++ +P+ + D QW+ F+ Sbjct: 219 SEIWKVNYETGVEECIVSQPDRDFTSPSISPDGQWLLFV 257 >gi|297579812|ref|ZP_06941739.1| tricorn protease [Vibrio cholerae RC385] gi|297535458|gb|EFH74292.1| tricorn protease [Vibrio cholerae RC385] Length = 1084 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|121585935|ref|ZP_01675728.1| MdsD protein [Vibrio cholerae 2740-80] gi|121549871|gb|EAX59891.1| MdsD protein [Vibrio cholerae 2740-80] Length = 1001 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD 413 ++ +G ++ G + R L P +S G+ L FS ++ GD Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGD 146 Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 >gi|119505342|ref|ZP_01627416.1| acylaminoacyl-peptidase [marine gamma proteobacterium HTCC2080] gi|119458797|gb|EAW39898.1| acylaminoacyl-peptidase [marine gamma proteobacterium HTCC2080] Length = 698 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 13/108 (12%) Query: 310 SPDSSQIVF--------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SPD Q+V+ + R G L+++ ++G + ++++ E + P WSP G I Sbjct: 56 SPDGRQVVYRRMGFDMMKDKRRG--DLWLVNTDGENHRKLTS-FEGNETSPQWSPDGQRI 112 Query: 362 AFTKFSGEKFAIGVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 A+ + +G++ A + G R+ + + WSPSG + F+ Sbjct: 113 AYVRRAGKEGAEIYVHWLVSGHSARITRVEGSPSHLRWSPSGAHIAFA 160 >gi|229522722|ref|ZP_04412138.1| protease-related protein [Vibrio cholerae TM 11079-80] gi|229340707|gb|EEO05713.1| protease-related protein [Vibrio cholerae TM 11079-80] Length = 1084 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 23/137 (16%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESCVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNETLI 431 +LYS+ G E I Sbjct: 159 MAQLYSVPAAGGREQRI 175 >gi|229526314|ref|ZP_04415718.1| protease-related protein [Vibrio cholerae bv. albensis VL426] gi|229336472|gb|EEO01490.1| protease-related protein [Vibrio cholerae bv. albensis VL426] Length = 1084 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|255746124|ref|ZP_05420071.1| protease-related protein [Vibrio cholera CIRS 101] gi|262158611|ref|ZP_06029725.1| protease-related protein [Vibrio cholerae INDRE 91/1] gi|262168976|ref|ZP_06036670.1| protease-related protein [Vibrio cholerae RC27] gi|255735878|gb|EET91276.1| protease-related protein [Vibrio cholera CIRS 101] gi|262022675|gb|EEY41382.1| protease-related protein [Vibrio cholerae RC27] gi|262029491|gb|EEY48141.1| protease-related protein [Vibrio cholerae INDRE 91/1] Length = 1039 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 309 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 355 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 2 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 53 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 54 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 113 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 114 MAQLYSVPAAGGRE 127 >gi|153212767|ref|ZP_01948403.1| tricorn protease [Vibrio cholerae 1587] gi|124116280|gb|EAY35100.1| tricorn protease [Vibrio cholerae 1587] Length = 1084 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|229527963|ref|ZP_04417354.1| protease-related protein [Vibrio cholerae 12129(1)] gi|229334325|gb|EEN99810.1| protease-related protein [Vibrio cholerae 12129(1)] Length = 1084 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|254224604|ref|ZP_04918220.1| tricorn protease [Vibrio cholerae V51] gi|125622667|gb|EAZ50985.1| tricorn protease [Vibrio cholerae V51] Length = 1084 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD 413 ++ +G ++ G + R L P +S G+ L FS ++ GD Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGD 146 >gi|257389180|ref|YP_003178953.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halomicrobium mukohataei DSM 12286] gi|257171487|gb|ACV49246.1| peptidase S9 prolyl oligopeptidase active site domain protein [Halomicrobium mukohataei DSM 12286] Length = 596 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 307 ASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ASYSP+ +++F D G E QL+ + ++G+ ++ +A + WS G+ AF Sbjct: 59 ASYSPERPELIFGKDEGGDERMQLFRLDADGT-ITSLTDSPDAKHRWGGWSHDGERFAFA 117 Query: 365 KFSGEK--FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 ++ F I V +D + L+ E D L WSP L+ + L+ + Sbjct: 118 SNRRDESVFDIYVQGRDDDEATLVHEGDGWLTVGGWSPDDTKLLVGEAH-SNVDQDLFVL 176 Query: 422 DL 423 DL Sbjct: 177 DL 178 >gi|121729769|ref|ZP_01682207.1| tricorn protease [Vibrio cholerae V52] gi|147671883|ref|YP_001214930.1| tricorn protease [Vibrio cholerae O395] gi|153816717|ref|ZP_01969384.1| tricorn protease [Vibrio cholerae NCTC 8457] gi|227811674|ref|YP_002811684.1| putative tricorn protease [Vibrio cholerae M66-2] gi|229506776|ref|ZP_04396285.1| protease-related protein [Vibrio cholerae BX 330286] gi|229510429|ref|ZP_04399909.1| protease-related protein [Vibrio cholerae B33] gi|229517440|ref|ZP_04406885.1| protease-related protein [Vibrio cholerae RC9] gi|229605250|ref|YP_002875954.1| protease-related protein [Vibrio cholerae MJ-1236] gi|254850313|ref|ZP_05239663.1| tricorn protease [Vibrio cholerae MO10] gi|298499912|ref|ZP_07009718.1| tricorn protease [Vibrio cholerae MAK 757] gi|121628491|gb|EAX60978.1| tricorn protease [Vibrio cholerae V52] gi|126512736|gb|EAZ75330.1| tricorn protease [Vibrio cholerae NCTC 8457] gi|146314266|gb|ABQ18806.1| tricorn protease [Vibrio cholerae O395] gi|227010816|gb|ACP07027.1| putative tricorn protease [Vibrio cholerae M66-2] gi|227014678|gb|ACP10887.1| putative tricorn protease [Vibrio cholerae O395] gi|229345476|gb|EEO10449.1| protease-related protein [Vibrio cholerae RC9] gi|229352874|gb|EEO17814.1| protease-related protein [Vibrio cholerae B33] gi|229357127|gb|EEO22045.1| protease-related protein [Vibrio cholerae BX 330286] gi|229371736|gb|ACQ62158.1| protease-related protein [Vibrio cholerae MJ-1236] gi|254846018|gb|EET24432.1| tricorn protease [Vibrio cholerae MO10] gi|297541893|gb|EFH77944.1| tricorn protease [Vibrio cholerae MAK 757] Length = 1084 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|148240656|ref|YP_001226043.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Synechococcus sp. WH 7803] gi|147849195|emb|CAK24746.1| Dipeptidyl aminopeptidase/acylaminoacyl-peptidase [Synechococcus sp. WH 7803] Length = 673 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVE--DSNLQAPTWSPSGRSLIFSRKKD 411 SP G IA+ SG + V DG + R+L + D +A +W+ GR LI SR + Sbjct: 52 SPDGQRIAYLAPSGGVLNLWVRDLDGDAPARVLTQQRDRPQRAASWTADGRYLISSRDAE 111 Query: 412 GDTGSKLYSID 422 GD + L ID Sbjct: 112 GDENTVLVRID 122 >gi|46445859|ref|YP_007224.1| hypothetical protein pc0225 [Candidatus Protochlamydia amoebophila UWE25] gi|46399500|emb|CAF22949.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 649 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN-----FRSMILAPRFSSNGKR 271 PR SPN Q +AY D +++L V+L + + +++ RS + + +G Sbjct: 45 PRLSPNGQYLAYLAPDAQNVLNVWLKNLKTAEKDRQVTTDKKRGIRSFL----WQFDGDH 100 Query: 272 ALISVQK--DEAMDIYSVDLQSNATERLT 298 L K DE +Y +QSN T LT Sbjct: 101 ILYEQDKDGDENWHLYQTHIQSNLTRDLT 129 >gi|262190170|ref|ZP_06048451.1| protease-related protein [Vibrio cholerae CT 5369-93] gi|262033945|gb|EEY52404.1| protease-related protein [Vibrio cholerae CT 5369-93] Length = 1039 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 309 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 355 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 2 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 53 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD 413 ++ +G ++ G + R L P +S G+ L FS ++ GD Sbjct: 54 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGD 101 >gi|227326738|ref|ZP_03830762.1| hypothetical protein PcarcW_05204 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 379 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%) Query: 310 SPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF 366 SPD S+I F D G QL+++ NG + +++++ + S F+ W P G +AF Sbjct: 266 SPDGSEIAFLMRDEAGVVQLWMISPNGGEPRQVTRTEHGVQSAFN--WHPSGCSLAFVC- 322 Query: 367 SGEKFAIGVMKKDGSQERLLVE-DS--NLQAPTWSPSGRSLIFSRKKDG 412 + + K G RL DS + A +SP G+ + + R+ DG Sbjct: 323 --DNSIMLCDAKSGELTRLTARTDSAPSADAVVFSPDGKQIAYMREIDG 369 >gi|153803128|ref|ZP_01957714.1| tricorn protease [Vibrio cholerae MZO-3] gi|124121347|gb|EAY40090.1| tricorn protease [Vibrio cholerae MZO-3] Length = 1084 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|295083922|emb|CBK65445.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Bacteroides xylanisolvens XB1A] Length = 692 Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 261 DIYVYDLNTQKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 320 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFT 364 +++ +S+ E++ VW +I FT Sbjct: 321 EKRFVSKAFESNVDAFVWGADAKMIYFT 348 >gi|170754274|ref|YP_001781472.1| putative lipoprotein [Clostridium botulinum B1 str. Okra] gi|169119486|gb|ACA43322.1| putative lipoprotein [Clostridium botulinum B1 str. Okra] Length = 357 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 20/157 (12%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVM 331 S+Q E M IY DL++ ++ + + ++ S + +I++ S++E K ++Y Sbjct: 139 SLQSAEGMKIY--DLENKKEIKIKSDVLVSGSLFKWLNEDEILYYGINSEKENKAKIY-- 194 Query: 332 QSNGSDQKRISQDKEASYFDPV------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++KE Y D + + P GD + G+KF + K + + Sbjct: 195 ------KYNVKENKEEVYVDNIEGICTYFMPNGDNVLLLSRQGDKFNLSYYNKKDNSFKK 248 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + E+ N Q + S +++ F K D + LY ID Sbjct: 249 ISEEVN-QVYKGTKSTKNMYFLGKNDLENKDYLYKID 284 >gi|254284774|ref|ZP_04959741.1| tricorn protease [Vibrio cholerae AM-19226] gi|150425559|gb|EDN17335.1| tricorn protease [Vibrio cholerae AM-19226] Length = 1084 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 23/134 (17%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD--------TGS- 416 ++ +G ++ G + R L P +S G+ L FS ++ GD GS Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158 Query: 417 --KLYSIDLNGRNE 428 +LYS+ G E Sbjct: 159 MAQLYSVPAAGGRE 172 >gi|302810344|ref|XP_002986863.1| hypothetical protein SELMODRAFT_182691 [Selaginella moellendorffii] gi|300145268|gb|EFJ11945.1| hypothetical protein SELMODRAFT_182691 [Selaginella moellendorffii] Length = 603 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 F + + SPD+ + D++GK L+ + +G Q+ + + AS +SP G + Sbjct: 445 FTATAVAVSPDAKAAIV-GDKDGKLHLFSLGEDGLHQEALLERHRASVTALEFSPDGTMF 503 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 A + E F +K++ + +L +++Q W+ Sbjct: 504 ASGDQNREAFVWDAVKREVKLKNMLYHTTSIQCIAWA 540 >gi|289580244|ref|YP_003478710.1| peptidase S9 prolyl oligopeptidase active site domain protein [Natrialba magadii ATCC 43099] gi|289529797|gb|ADD04148.1| peptidase S9 prolyl oligopeptidase active site domain protein [Natrialba magadii ATCC 43099] Length = 668 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 310 SPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQD--KEASYFDPVWSPQGDLIAFTKF 366 SPD S+I F D G+ +L+V+ G+ ++ D + A +F W GD + F + Sbjct: 30 SPDGSEIAFYYDETGRNELHVLDVETGTLEQWSDGDVPRNARWF-LRWDADGDRVFFHQD 88 Query: 367 SG--EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 G E+ I + + G+ E ++ D S G SL+F+ +DG + Y Sbjct: 89 EGGDEQNDIYALSRAGAVESVVEIDGQAVLNDVSDDGESLLFTSNRDGQMNAYRY 143 >gi|170727653|ref|YP_001761679.1| peptidase S41 [Shewanella woodyi ATCC 51908] gi|169813000|gb|ACA87584.1| peptidase S41 [Shewanella woodyi ATCC 51908] Length = 1097 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 17/154 (11%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFT 364 SA SPD S + SD G+++++ ++GS K++++D SP G IA Sbjct: 360 SAVMSPDGSWVYGISDASGEQEIWRFPADGSQGAKQLTKDGTTLRMGIKLSPDGRYIATD 419 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAP----TWSPSGRSLIFSRKKDGDTGSK--L 418 ++G+ + + + K ++++ + L P WS + + ++ + G + L Sbjct: 420 DYNGDLWLLDL--KRNRTKKIITQGEGL-GPYADVVWSGDSQYIAVTKFELGTPRPQVVL 476 Query: 419 YSIDLNGRNETLIN------TPAYASDPQWVGFM 446 YS+D + R+E L + PA++ D QW+ F+ Sbjct: 477 YSLD-DDRSEALTSDKYESYAPAFSPDGQWLYFL 509 >gi|315128132|ref|YP_004070135.1| hypothetical protein PSM_A3070 [Pseudoalteromonas sp. SM9913] gi|315016645|gb|ADT69983.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 937 Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRID-RAPKRIGNFRSMILAPRFSSNGKRALIS 275 P SP++ K+AY + + ++Y+ D R + N + P FS NG+ Sbjct: 470 PTLSPDETKLAYLSASLNENWQLYIQGVGGDTRESVPMPNGYQYLSQPSFSQNGESIYFV 529 Query: 276 VQKDEAMDIYSVDLQSNATERLTN 299 + DIY+ +++N RLTN Sbjct: 530 AGLNNKTDIYNYHIKNNTLTRLTN 553 >gi|145528438|ref|XP_001450017.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124417609|emb|CAK82620.1| unnamed protein product [Paramecium tetraurelia] Length = 933 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RLWDVK +Q I ++HT + +Y S+ D ++ SG Sbjct: 570 LRLWDVKSGQQNI-----------ELVSHTST--VY-SVCFSPDDI---------TLASG 606 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 S+ + D N + + ++ FSP+ +A +YD + L D + Sbjct: 607 SADKSIRLWDVKTGNQKAKLDGHNSTVYSINFSPDGATLASGSYDKS----IRLWDVKTG 662 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 ++ S I + FS +GK L S D+++ ++ V ++ + ++ + S Sbjct: 663 NQKAKLDGHNSTIQSVCFSPDGK-TLASGSDDDSIRLWDVQIEQEKAKLDGHSCAVQ-SV 720 Query: 308 SYSPDSSQIVFESD 321 +SPD + + SD Sbjct: 721 CFSPDGTTLASGSD 734 >gi|15600815|ref|NP_232445.1| hypothetical protein VCA0044 [Vibrio cholerae O1 biovar eltor str. N16961] gi|9657426|gb|AAF95958.1| hypothetical protein VC_A0044 [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 714 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD +I F Q++++ + G D +++ S P+WSP IAFT + Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSE-TPIWSPDSQSIAFT---AD 98 Query: 370 KFAIG---VMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGD 413 ++ +G ++ G + R L P +S G+ L FS ++ GD Sbjct: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGD 146 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 >gi|218440929|ref|YP_002379258.1| hypothetical protein PCC7424_4016 [Cyanothece sp. PCC 7424] gi|218173657|gb|ACK72390.1| WD40 domain protein beta Propeller [Cyanothece sp. PCC 7424] Length = 169 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 12/148 (8%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 +++ D A + + +F S L P+ SS + + + ++ + D+Y D Q+ +L NT Sbjct: 25 ILNFPFDAAGRSLNSFASE-LTPQVSS--RFIVFTSDRNGSQDVYLYDAQN---RQLVNT 78 Query: 301 LFINI------SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 +N + S D IVFE+ R+G+ +++ ++ ++ A +P Sbjct: 79 PGLNSLDEIASHPAISEDGRYIVFEASRQGRTGIFLYDRQTQQKRNLTASLPAQVRNPTI 138 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 S G IAF ++ + V + G Q Sbjct: 139 SADGTTIAFEVAKDGQWDLMVYNRSGQQ 166 >gi|153829269|ref|ZP_01981936.1| tricorn protease [Vibrio cholerae 623-39] gi|148875234|gb|EDL73369.1| tricorn protease [Vibrio cholerae 623-39] Length = 890 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 D+Y V L S T+R+T+T S+S D ++++ S+REG LY Sbjct: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400 >gi|159896754|ref|YP_001543001.1| periplasmic component of the Tol biopolymer transport system-like protein [Herpetosiphon aurantiacus ATCC 23779] gi|159889793|gb|ABX02873.1| Periplasmic component of the Tol biopolymer transport system-like [Herpetosiphon aurantiacus ATCC 23779] Length = 537 Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 13/89 (14%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI------ 405 WSP G +AF G K I + DGS R ++E N+ Q+ +WSP Sbjct: 269 WSPDGKTMAFFVRDGAKTNIYLADGDGSNSRSVIELQNMAPQSLSWSPDSSKFAFITSDI 328 Query: 406 -FSRKKDGDTGSKLYSIDLNGRNETLINT 433 F K+D LY DL NE + T Sbjct: 329 DFETKED----QNLYVYDLASNNEKQLTT 353 Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDREGKEQLYVMQ 332 I + E ++Y DL SN ++LT T I+ S+SPD+ I+F + ++G E V+ Sbjct: 328 IDFETKEDQNLYVYDLASNNEKQLTTTGLIDFDPLSWSPDNQTILFAAGQDGIE-FNVIN 386 Query: 333 SNGSDQKRIS 342 ++GS+ +++ Sbjct: 387 ADGSNLAKLA 396 >gi|119469696|ref|ZP_01612565.1| hypothetical protein ATW7_15839 [Alteromonadales bacterium TW-7] gi|119446943|gb|EAW28214.1| hypothetical protein ATW7_15839 [Alteromonadales bacterium TW-7] Length = 941 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA---PKRIGNFRSMILAPRFSSNGKRAL 273 P SP+ +K+ Y + + ++Y+ D +D P + N + P FS NG+ Sbjct: 470 PTLSPDNKKLVYLSASLNENWQMYIQD--VDGGISQPVPMPNGYQYLTQPSFSDNGESIY 527 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTN 299 ++ DIY+ + SN +RLT+ Sbjct: 528 FVAGLNKTTDIYNYHIASNTLKRLTH 553 >gi|160874428|ref|YP_001553744.1| peptidase S41 [Shewanella baltica OS195] gi|160859950|gb|ABX48484.1| peptidase S41 [Shewanella baltica OS195] gi|315266664|gb|ADT93517.1| peptidase S41 [Shewanella baltica OS678] Length = 1094 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++ L A RLT+ + A+ S D + + ++ EG ++YV+ G KR+S Sbjct: 51 DLWTQTLGQKAATRLTSLPAEELGATISADGKWVAYVANYEGASEVYVIPVAGGVAKRVS 110 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + W+P+G+++ T Sbjct: 111 FENSRVRVQG-WTPKGEILYST 131 >gi|258649216|ref|ZP_05736685.1| prolyl oligopeptidase family protein [Prevotella tannerae ATCC 51259] gi|260850481|gb|EEX70350.1| prolyl oligopeptidase family protein [Prevotella tannerae ATCC 51259] Length = 714 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 37/62 (59%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y++ L + A++ LT + + + I+F S+ G QL++M ++GS++++IS Sbjct: 76 LYAMALSNKASKLLTASSYNERGGVFVNQGKSIIFLSNASGSSQLWMMNADGSNRQQISH 135 Query: 344 DK 345 +K Sbjct: 136 EK 137 >gi|170758209|ref|YP_001787304.1| putative lipoprotein [Clostridium botulinum A3 str. Loch Maree] gi|169405198|gb|ACA53609.1| putative lipoprotein [Clostridium botulinum A3 str. Loch Maree] Length = 357 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVM 331 S+Q E M IY DL++ ++ + + ++ + + +I++ S++E K ++Y Sbjct: 139 SLQSAEGMKIY--DLENKKEIKIKSDVLVSGNLFKWLNEDEILYYGINSEKENKAKIY-- 194 Query: 332 QSNGSDQKRISQDKEASYFDPV------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++KE Y D + + P GD + G+KF + K + + Sbjct: 195 ------KYNVKENKEEVYVDNIEGICTYFMPNGDNVLLLSSQGDKFNLSYYNKKDNSFKK 248 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + E+ N Q + S +++ F K D + LY ID N N T Sbjct: 249 ISEEVN-QIYKGTKSIKNMYFLGKNDLENKDYLYKIDGNTLNLT 291 >gi|212635429|ref|YP_002311954.1| peptidase [Shewanella piezotolerans WP3] gi|212556913|gb|ACJ29367.1| Peptidase [Shewanella piezotolerans WP3] Length = 710 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 11/98 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEA-----MDIYSVDLQSNAT--ERLTNTLFIN 304 +I S +L S +G + + +V+ +A D+Y DL SNA +++T Sbjct: 61 KINKLHSAVL----SHDGTKVVYAVKNVDADGKASSDLYIQDLNSNAATAKQITQFSGTE 116 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 S ++ P+ I F + R+G QLY + +G + ++++ Sbjct: 117 HSVAFGPNDKSIYFLAARDGSSQLYQLALDGGEARQVT 154 >gi|124008195|ref|ZP_01692892.1| WD-40 repeat [Microscilla marina ATCC 23134] gi|123986294|gb|EAY26116.1| WD-40 repeat [Microscilla marina ATCC 23134] Length = 743 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V DG IR L R I F RFSPN K+ A+ D R + + R R+ Sbjct: 429 VWSLDGKIIRDLKRHRRAI-FSARFSPNGSKIVTASAD-----RTARIWSFTGRQLHRLK 482 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 R + A FS NG+ +++ +D ++ V +T + N+ F A +SP+ Sbjct: 483 GHRKAVYAATFSPNGQY-ILTASEDNTAKLWDVQGTKVSTLKSENSPF--SYAVFSPNGR 539 Query: 315 QIVFES 320 I+ S Sbjct: 540 YILTAS 545 >gi|154493660|ref|ZP_02032980.1| hypothetical protein PARMER_03000 [Parabacteroides merdae ATCC 43184] gi|154086870|gb|EDN85915.1| hypothetical protein PARMER_03000 [Parabacteroides merdae ATCC 43184] Length = 708 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 310 SPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD ++V+ + +++VM ++G+D K+I++ S + VW G IAF Sbjct: 69 SPDGQKVVYTVAYYSVPENRSNREVFVMNADGTDNKQITK-TSYSENEAVWIKGGKKIAF 127 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + M DGS R L E + +++ +SP + ++F Sbjct: 128 LCNESGSSQLWEMNPDGSDRRQLSEYEGDIEGFAFSPDEKKVLF 171 >gi|320451194|ref|YP_004203290.1| acylamino-acid-releasing enzyme [Thermus scotoductus SA-01] gi|320151363|gb|ADW22741.1| acylamino-acid-releasing enzyme [Thermus scotoductus SA-01] Length = 602 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 41/203 (20%) Query: 280 EAMDIYSVDLQSNATERLTNT--------------LFINISASYSPDSSQIV----FESD 321 E +++ +DL+ ERLT T +F+ + + P S ++ F+ D Sbjct: 75 EVQELFRLDLRGGEAERLTETPGVLDYALGPEGEVVFLALKEAPKPGSPRVYEGWPFKFD 134 Query: 322 -----REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA---I 373 EG LY ++ QK++ D+ + D V SP+G + + G + Sbjct: 135 GRGLLPEGNVALYALEGG---QKKLLLDRYPAPRDMVPSPEGLYLVMAEDKGAQAEWRDT 191 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI-FSRKKDGDTGSKLYSID-------LNG 425 + K+G +++ + A WSP G + + ++ G T ++LY + G Sbjct: 192 LYLLKEGRLQKVYGGFGPIFALEWSPEGLFFLGHAFERGGGTEARLYHLHGGEVRVLFEG 251 Query: 426 RNETLINT----PAYASDPQWVG 444 + IN+ A+ P+W G Sbjct: 252 SLQNSINSDLRHGAHTQGPRWAG 274 >gi|116624929|ref|YP_827085.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228091|gb|ABJ86800.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 893 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 10/114 (8%) Query: 228 YATYDDEDILR-VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y ED LR ++L+D + + P + R PR S +G R +++++ + I+ Sbjct: 589 YVPTRPEDQLRPIFLIDEKGNSEPLPVAKARYG--RPRISPDGSRFAVAIREGTSSQIWI 646 Query: 287 VDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDREGK-EQLYVMQSNGS 336 + +S RL+ F N I ++PD +VF SD + +Y M+++G+ Sbjct: 647 YEWRSR---RLSRFAFPNGNSIFPVWTPDGKYLVFSSDTQNPGPGIYWMRADGA 697 >gi|196015143|ref|XP_002117429.1| hypothetical protein TRIADDRAFT_61488 [Trichoplax adhaerens] gi|190579958|gb|EDV20045.1| hypothetical protein TRIADDRAFT_61488 [Trichoplax adhaerens] Length = 1302 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 9/127 (7%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 L+E +F N V YA +D+++ L++Y + + + F I A S+NGK+ Sbjct: 939 LYECKFIENCL-VVYAVHDEKNRLKMYAGTDKEFKLISKYSTFGHRITAICISNNGKQVA 997 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTL----FINISASYSPDSSQIVFESDREGKEQLY 329 I + + + S + N + L I + S D++ IV ++G QL+ Sbjct: 998 IGFSEAGGVQLLSANDIKNCLWHVKGNLCEMTCITLIKFSSNDNNLIV----KDGNRQLF 1053 Query: 330 VMQSNGS 336 V+ S G+ Sbjct: 1054 VLSSTGA 1060 >gi|126173470|ref|YP_001049619.1| peptidase S41 [Shewanella baltica OS155] gi|125996675|gb|ABN60750.1| peptidase S41 [Shewanella baltica OS155] Length = 1094 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++ L A RLT+ + A+ S D + + ++ EG ++YV+ G KR+S Sbjct: 51 DLWTQTLGQKAATRLTSLPAEELGATISADGKWVAYVANYEGASEVYVIPVAGGVAKRVS 110 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + W+P+G+++ T Sbjct: 111 FENSRVRVQG-WTPKGEILYST 131 >gi|322437539|ref|YP_004219629.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] gi|321165432|gb|ADW71135.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] Length = 246 Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 14/135 (10%) Query: 325 KEQLYVMQS-NGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGS 381 +E+L+ ++ +GSD+ +++ D F WSP G +A + +G + G Sbjct: 7 QEKLWRARALDGSDKVQLTSDS-LEVFLAHWSPDGKQLAIMAKEHNGVWQNYIIDAAGGK 65 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKD---GDTGSKLYSI-DL-NGRNETL-----I 431 E LL E N P WS G ++F R+ D +TGS I DL + ET+ + Sbjct: 66 PEPLLHEARNAADPGWSADGSKIVFGREPDLMGKETGSHTIQILDLATHQTETVPGSEGL 125 Query: 432 NTPAYASDPQWVGFM 446 +P ++ D +W+ + Sbjct: 126 FSPRWSPDGRWIAAL 140 >gi|115373641|ref|ZP_01460936.1| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1] gi|310824959|ref|YP_003957317.1| hypothetical protein STAUR_7735 [Stigmatella aurantiaca DW4/3-1] gi|115369344|gb|EAU68284.1| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1] gi|309398031|gb|ADO75490.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 1196 Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 16/162 (9%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLT + + PD +++F S+R ++Y G ++R+ D+ A P S Sbjct: 36 RLTVGMGDHFLGQLEPDGKRLIFVSNRNIATEIYAQDLEGGRERRLF-DEGADVTWPRIS 94 Query: 356 PQGDLIAFTKF---SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK-D 411 P G + + F +G + + + + R L E+S+ W + + SR Sbjct: 95 PDGKHLLYISFRDQAGGQLCVRTLPA-AEERRCLDEESSAVQAEWIDASHVALVSRAAIQ 153 Query: 412 G-------DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 G D KL + L RN + +PA + D +W+ ++ Sbjct: 154 GDLHLSRVDVALKLSAKPLLERN---LTSPALSPDGRWLVYV 192 >gi|238750281|ref|ZP_04611783.1| hypothetical protein yrohd0001_12160 [Yersinia rohdei ATCC 43380] gi|238711514|gb|EEQ03730.1| hypothetical protein yrohd0001_12160 [Yersinia rohdei ATCC 43380] Length = 428 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 310 SPDSSQI-VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S I +D G QL+++ NG + ++++ + W PQG +AF Sbjct: 314 SPDGSAIACLMADDNGVVQLWLVSPNGGEPRQLTATESGIQSAFSWHPQGQSLAFIS--- 370 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-----TWSPSGRSLIFSRKKDGDT 414 + + G +RL +LQAP +SP G + F R+ G T Sbjct: 371 DNSVMQCEVATGQLQRLTAR--SLQAPLADAVVFSPDGSKIAFMREIAGFT 419 >gi|157375494|ref|YP_001474094.1| peptidase S9 prolyl oligopeptidase [Shewanella sediminis HAW-EB3] gi|157317868|gb|ABV36966.1| peptidase S9, prolyl oligopeptidase active site domain protein [Shewanella sediminis HAW-EB3] Length = 684 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 7/90 (7%) Query: 260 ILAPRFSSNGKRALISVQK-----DEAMDIYSVDLQS--NATERLTNTLFINISASYSPD 312 + +P S++G + + +V+K + + D+Y DL + ++LT+ S +++ D Sbjct: 38 LHSPALSNDGSKIVYAVKKFDAEGESSSDLYIQDLSQADSKAKQLTSVKGTEHSVAFAAD 97 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 I F + R G QLY + NG + +IS Sbjct: 98 DQSIYFLAGRSGSSQLYKLSLNGGEAIQIS 127 >gi|255691544|ref|ZP_05415219.1| prolyl oligopeptidase family protein [Bacteroides finegoldii DSM 17565] gi|260622936|gb|EEX45807.1| prolyl oligopeptidase family protein [Bacteroides finegoldii DSM 17565] Length = 700 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 283 DIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES-DREGKE----QLYVMQSNGS 336 DIY DL + TE +T + + YSPD I ++S +R+G E +L++M Sbjct: 269 DIYIYDLNTKKTENITEENKGYDTNPQYSPDGKYIAWQSMERDGYEADLNRLFIMNLETG 328 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +++ +S+ E++ VW +I FT GV + L + + +++A T Sbjct: 329 EKRFVSKAFESNVDAFVWGADAKVIYFT---------GVWHGESQIYALDLANDSVKAIT 379 Query: 397 ---WSPSGRSL----IFSRKKDGDTGSKLYSIDLNGRNETL 430 + G +L + +++ G ++Y++ L+G L Sbjct: 380 SGMYDYEGVALFGDKLIAKRHSMSMGDEIYTVALDGSTTQL 420 >gi|116622762|ref|YP_824918.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225924|gb|ABJ84633.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 841 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 +EQ + QS G A F P SP G IAF + + +MK + Sbjct: 307 QEQFWSGQSLGG---------PAQAFGPRVSPDGQTIAFQAMVDGQTQVAIMKPESGNWT 357 Query: 385 LLVEDSNL---QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +L NL Q TWS G L F R D G ++S+ L G Sbjct: 358 VLTHQKNLGQIQDITWSRDGSKLYFDRVTDTPRG--VFSVPLLG 399 >gi|240172096|ref|ZP_04750755.1| WD-40-like beta propeller repeat-containing protein [Mycobacterium kansasii ATCC 12478] Length = 339 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 8/102 (7%) Query: 309 YSPDSSQIVFE-SDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTK 365 YS D +IV++ S G+ L+V +N ++ ++++ +D A + P +SP G IA+T Sbjct: 236 YSRDGKKIVYQLSVSRGRNALFVADANFTNPRKLADLKDPRAEWTLPTFSPDGTQIAYTD 295 Query: 366 --FSGEKFAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGR 402 F AI V+ DGS R + + +P+W + R Sbjct: 296 TLFDVGAQAIFVVNADGSGVRQVSKPQRGDYHTSPSWGYAAR 337 >gi|217974238|ref|YP_002358989.1| peptidase S41 [Shewanella baltica OS223] gi|217499373|gb|ACK47566.1| peptidase S41 [Shewanella baltica OS223] Length = 1094 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+++ L A RLT+ + A+ S D + + ++ EG ++YV+ G KR+S Sbjct: 51 DLWTQTLGQKAATRLTSLPAEELGATISADGKWVAYVANYEGASEVYVIPVAGGVAKRVS 110 Query: 343 QDKEASYFDPVWSPQGDLIAFT 364 + W+P+G+++ T Sbjct: 111 FENSRVRVQG-WTPKGEILYST 131 >gi|127512833|ref|YP_001094030.1| peptidase S9 prolyl oligopeptidase [Shewanella loihica PV-4] gi|126638128|gb|ABO23771.1| peptidase S9, prolyl oligopeptidase active site domain protein [Shewanella loihica PV-4] Length = 685 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Query: 265 FSSNGKRALISVQK-----DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S++G + + +V+K + D+Y L +RLT+ S ++S D +I F Sbjct: 47 LSNDGTKIVYAVKKFDDKGEAQSDLYLQSLIDGKVKRLTSAKGTEHSVAFSADDKKIYFL 106 Query: 320 SDREGKEQLYVMQSNGSDQKRIS 342 + R+G QLY + +G + +IS Sbjct: 107 AARDGSSQLYELALDGGEAVKIS 129 >gi|53713897|ref|YP_099889.1| putative peptidase [Bacteroides fragilis YCH46] gi|52216762|dbj|BAD49355.1| putative peptidase [Bacteroides fragilis YCH46] Length = 702 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ ++ ++T+T + +++ D S+++F S+ G QLY M +GS +K+IS Sbjct: 84 EVFVMNADGTDNRQITHTPYQENEVTWAADGSKLLFLSNDNGSSQLYEMNPDGSGRKQIS 143 Query: 343 Q 343 + Sbjct: 144 K 144 >gi|60682106|ref|YP_212250.1| putative exported aminopeptidase [Bacteroides fragilis NCTC 9343] gi|265764242|ref|ZP_06092810.1| prolyl oligopeptidase [Bacteroides sp. 2_1_16] gi|60493540|emb|CAH08327.1| putative exported aminopeptidase [Bacteroides fragilis NCTC 9343] gi|263256850|gb|EEZ28196.1| prolyl oligopeptidase [Bacteroides sp. 2_1_16] Length = 702 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ ++ ++T+T + +++ D S+++F S+ G QLY M +GS +K+IS Sbjct: 84 EVFVMNADGTDNRQITHTPYQENEVTWAADGSKLLFLSNDNGSSQLYEMNPDGSGRKQIS 143 Query: 343 Q 343 + Sbjct: 144 K 144 >gi|313677495|ref|YP_004055491.1| prolyl oligopeptidase [Marivirga tractuosa DSM 4126] gi|312944193|gb|ADR23383.1| secreted prolyl oligopeptidase family protein [Marivirga tractuosa DSM 4126] Length = 632 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 303 INISASY-SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 IN S Y S D S+++ S+ G LY + ++G+ +S + E S+F + P+ D I Sbjct: 44 INYSGGYFSHDESKLLVSSNATGIYNLYALHTDGTLVDTLSNNTEESWFANSYFPKDDRI 103 Query: 362 AFT--KFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIF-SRKKD 411 F+ K E I ++ +DG+ L E++ + WS +S + S K+D Sbjct: 104 LFSADKGGNEISHIYLLDEDGNVIDLTPEENEKASFAGWSKDLKSFEYISNKRD 157 >gi|301163576|emb|CBW23127.1| putative exported aminopeptidase [Bacteroides fragilis 638R] Length = 702 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ ++ ++T+T + +++ D S+++F S+ G QLY M +GS +K+IS Sbjct: 84 EVFVMNADGTDNRQITHTPYQENEVTWAADGSKLLFLSNDNGSSQLYEMNPDGSGRKQIS 143 Query: 343 Q 343 + Sbjct: 144 K 144 >gi|311746889|ref|ZP_07720674.1| putative peptidase [Algoriphagus sp. PR1] gi|311302584|gb|EAZ82740.2| putative peptidase [Algoriphagus sp. PR1] Length = 788 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 17/115 (14%) Query: 257 RSMILA-PRFSSNGKRALISVQKDEAMD--IYSVDLQSNATERLTNTL------------ 301 R +IL+ P FS NG++A+I+++ + D I +DL + + L Sbjct: 327 RDVILSQPYFSPNGEKAIINIRSADNKDRWIAEIDLTTGTLKTLDRQRDEAWIAGPGIGW 386 Query: 302 -FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 F + + PD+ I F+S+ G LY++ ++K ++ FDP S Sbjct: 387 SFSGGTMGWLPDNKHIYFQSEESGYSHLYLLDVTTGEKKALTSGN-YEVFDPFLS 440 >gi|253567110|ref|ZP_04844561.1| prolyl oligopeptidase [Bacteroides sp. 3_2_5] gi|251944234|gb|EES84743.1| prolyl oligopeptidase [Bacteroides sp. 3_2_5] Length = 702 Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +++ ++ ++T+T + +++ D S+++F S+ G QLY M +GS +K+IS Sbjct: 84 EVFVMNADGTDNRQITHTPYQENEVTWAADGSKLLFLSNDNGSSQLYEMNPDGSGRKQIS 143 Query: 343 Q 343 + Sbjct: 144 K 144 >gi|149193986|ref|ZP_01871084.1| translocation protein TolB precursor [Caminibacter mediatlanticus TB-2] gi|149135939|gb|EDM24417.1| translocation protein TolB precursor [Caminibacter mediatlanticus TB-2] Length = 383 Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 21/202 (10%) Query: 217 PRFSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P+++ N+Q Y T Y+ + +L + + T ++I + + M++ N + L++ Sbjct: 163 PKWADNKQTTIYFTRYERKPVLYKFNIYTG---KKEKILSSQGMLIVSDVKDN--KLLLT 217 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ--- 332 + + D+Y DL + ++TN I+++ + D +I+F SDR G YV Q Sbjct: 218 LAPNGQPDVYLFDLNTKKLTKITNYQGIDVNGKFWGD--KIIFVSDRYGNP--YVFQKDL 273 Query: 333 SNGSDQKRISQDKEA----SYFDP-VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + G+ + + K +Y D V S + AF + F + D S +RL + Sbjct: 274 TTGAVSRVLYHGKNQVGVDTYMDNLVISTRETANAFKPNTFNLFLVNA--NDDSLKRLTM 331 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 N+ P +S G S++F ++ Sbjct: 332 NGQNM-FPNFSVDGNSIMFIKR 352 >gi|21244823|ref|NP_644405.1| dipeptidyl peptidase [Xanthomonas axonopodis pv. citri str. 306] gi|21110525|gb|AAM38941.1| dipeptidyl peptidase [Xanthomonas axonopodis pv. citri str. 306] Length = 800 Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 19/196 (9%) Query: 262 APRFSSNGKRALISVQKDEAMD--IYSVDLQS---NATERLTNTLFINISAS---YSPDS 313 A +S +G+ + ++ + D I SVDL + RL+++ +IN + + PD+ Sbjct: 351 AVHWSDDGRNVAVEIRAVDNKDRWIASVDLDNARLQPRHRLSDSAWINWDFNDFGWLPDN 410 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF---TKFSGEK 370 + S+ G QLY ++ NG ++R E S PV S G + F K+ G+ Sbjct: 411 RTLWLLSEESGYSQLYTVEGNGKPRQRTRGKWEVSM--PVPSADGSGMFFLCNQKWPGD- 467 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + + Q + + ++ + SP+G+ L+ R ++L + G T+ Sbjct: 468 YEVCKLDLRNDQLTEITALNGVEGYSLSPNGQQLLV-RYSGSYLPTQLAVVPAAGGQATV 526 Query: 431 IN---TPAYASDPQWV 443 + TPA+ + P W+ Sbjct: 527 LTDTRTPAFKAQP-WI 541 >gi|166710292|ref|ZP_02241499.1| dipeptidyl peptidase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 789 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 27/200 (13%) Query: 262 APRFSSNGKRALISVQKDEAMD--IYSVDLQS---NATERLTNTLFINISAS---YSPDS 313 A +S +G+ + ++ + D I SVDL + RL+++ +IN + + PD+ Sbjct: 340 AVHWSDDGRNVAVEIRAVDNKDRWIASVDLDNAKLQPRHRLSDSAWINWDFNDFGWLPDN 399 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF---TKFSGEK 370 + S+ G QLY M+ N ++R E S PV S G + F K+ G+ Sbjct: 400 RTLWLLSEESGYSQLYTMEGNSKPRQRTRGKWEVSM--PVPSADGSGMFFLCNQKWPGD- 456 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS----KLYSIDLNGR 426 + + + Q + + ++ + SP+GR L+ S +GS +L + G Sbjct: 457 YEVCKLDLRNDQLTEVTALNGVEGFSLSPNGRQLLVSY-----SGSYLPTQLAVVPATGG 511 Query: 427 NETLIN---TPAYASDPQWV 443 T++ TPA+ + P W+ Sbjct: 512 QATVLTDTRTPAFKAQP-WI 530 >gi|119489608|ref|ZP_01622368.1| WD-40 repeat protein [Lyngbya sp. PCC 8106] gi|119454520|gb|EAW35668.1| WD-40 repeat protein [Lyngbya sp. PCC 8106] Length = 1795 Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 18/151 (11%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSPN Q +A ++ D L DT+I P + ++ + FS +G+ + S + Sbjct: 1175 FSPNAQMIASSSQDQTVKLWKLGQDTQIAAIPITLRGHGDIVSSVSFSPDGQ-IIASASE 1233 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSP-------DSSQIVFESDREGKEQLYVM 331 D+ + ++S++ Q L I+A YSP ++ + +G +L Sbjct: 1234 DKTVKLWSLEGQ----------LLRTITAHYSPLNWVSFSPKGDVIATAGNDGTARLLTP 1283 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + R S ++ + +SP G+LIA Sbjct: 1284 RGRLLKTLRHSSSDQSKVYTVTFSPDGELIA 1314 >gi|51598187|ref|YP_072378.1| hypothetical protein YPTB3902 [Yersinia pseudotuberculosis IP 32953] gi|170022271|ref|YP_001718776.1| hypothetical protein YPK_0009 [Yersinia pseudotuberculosis YPIII] gi|186897410|ref|YP_001874522.1| hypothetical protein YPTS_4119 [Yersinia pseudotuberculosis PB1/+] gi|51591469|emb|CAH23140.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|169748805|gb|ACA66323.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII] gi|186700436|gb|ACC91065.1| conserved hypothetical protein [Yersinia pseudotuberculosis PB1/+] Length = 433 Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 17/112 (15%) Query: 310 SPDSSQI-VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD S I +D G QL+++ NG + ++++ + WSPQG+ +AF + Sbjct: 320 SPDGSAIACLMNDDNGVVQLWLISPNGGELRQLTASQWGIQSAFSWSPQGEHLAFICDN- 378 Query: 369 EKFAIGVMKKD---GSQERLLVEDSNLQAP-----TWSPSGRSLIFSRKKDG 412 VM D G RL ++ AP +SP+G+ + F R+ DG Sbjct: 379 -----SVMLCDSLTGHLRRLTAR--SVVAPLADAVVFSPNGKKIAFMREIDG 423 >gi|159899567|ref|YP_001545814.1| hypothetical protein Haur_3048 [Herpetosiphon aurantiacus ATCC 23779] gi|159892606|gb|ABX05686.1| hypothetical protein Haur_3048 [Herpetosiphon aurantiacus ATCC 23779] Length = 408 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 11/171 (6%) Query: 278 KDEAMDIYSVDLQSNATERLTN---TLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 +D+A +I +D N LTN ++ I + +PD + + ++ V + Sbjct: 41 QDQAGNIQLID-SHNQQLTLTNDASSIVQYIQVTPAPDGQHVAYIQLTPTVIEIRVQAFD 99 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 GS + + D F WSP ++AF SG + V+ DGS+ V D Sbjct: 100 GSPARTVFSDFNLRPFYLSWSPNSQMLAFLA-SGTTMELYVVPADGSEVAHKVRDGQPSY 158 Query: 395 PTWSPSGRSLIFSRKKDGDTG-SKLYSI---DLNGRNETL--INTPAYASD 439 W P +L+ G + ++S+ DL ET PA+ +D Sbjct: 159 FAWKPDSSALLLHTGGGTPVGNTAVHSVQSKDLTFFKETAGDFQAPAWNAD 209 >gi|186686820|ref|YP_001870013.1| WD-40 repeat-containing protein [Nostoc punctiforme PCC 73102] gi|186469172|gb|ACC84972.1| WD-40 repeat protein [Nostoc punctiforme PCC 73102] Length = 2172 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 22/127 (17%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR--SMILAPRFS 266 S I+ E RFSP+++ V A+ D RV+ D + K+I F+ S + + FS Sbjct: 917 SHQHIVNEARFSPDEKLVITASRDG--TARVW------DLSGKQIVLFKHQSSVNSANFS 968 Query: 267 SNGKRALISVQKDEAMDIYSVD----LQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +GK+ +I+ D+ ++++ L+ +E N SAS+SPD +IV SD Sbjct: 969 PDGKQ-IITASDDKTARVWNLSGKLLLELKKSETTLN------SASFSPDGKRIVTTSD- 1020 Query: 323 EGKEQLY 329 +G +L+ Sbjct: 1021 DGTARLW 1027 >gi|255535191|ref|YP_003095562.1| hypothetical protein FIC_01050 [Flavobacteriaceae bacterium 3519-10] gi|255341387|gb|ACU07500.1| hypothetical protein FIC_01050 [Flavobacteriaceae bacterium 3519-10] Length = 647 Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S ++ K+ + T ++ + ++YLMDT ++ + G ++ F+++G+ S Sbjct: 296 LSEDKSKIVFQT-NESGLHKLYLMDTASNKYSEIKGLAVGLVNNFEFTNDGRSLFFSQST 354 Query: 279 -DEAMDIYSVDLQSNATERLTNT 300 D + DIY +DL SN ER T++ Sbjct: 355 YDSSADIYRLDLASNTIERWTDS 377 >gi|218249119|ref|YP_002374490.1| WD-40 repeat-containing protein [Cyanothece sp. PCC 8801] gi|218169597|gb|ACK68334.1| WD-40 repeat protein [Cyanothece sp. PCC 8801] Length = 1161 Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 50/245 (20%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSPN Q +A A+ D +R++ R R I + I FS +G+ + S + Sbjct: 568 FSPNGQLIATASSDG--TIRLW---DRQGRQKTVITGHKGNIYRVTFSPDGQ-LIASASQ 621 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D ++++ Q T + N+ S S+SPDS ++ S R+ +++ +Q + Q Sbjct: 622 DNTAKVWNLQGQELMTLKGHNSSVY--SVSFSPDSKHLLTTS-RDDTARIWDLQGH---Q 675 Query: 339 KRISQDKEAS----YFDP---------------VWSPQGDLIAFTKFSGEKFAIGVMKKD 379 I + E S F P +W QG+L+ K S + F D Sbjct: 676 LAILKGHEKSIDHGVFSPDGQRIATASRDGTVRIWDNQGNLLKILKDSVDSFYSVSFSPD 735 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G +RL + W G+S+ + L G E L+ Y+ D Sbjct: 736 G--QRLASSAKDGTVRIWDNQGKSI----------------LTLKGHQE-LVKNVTYSHD 776 Query: 440 PQWVG 444 W+ Sbjct: 777 GNWIA 781 >gi|257062205|ref|YP_003140093.1| hypothetical protein Cyan8802_4475 [Cyanothece sp. PCC 8802] gi|256592371|gb|ACV03258.1| WD-40 repeat protein [Cyanothece sp. PCC 8802] Length = 1161 Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 50/245 (20%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSPN Q +A A+ D +R++ R R I + I FS +G+ + S + Sbjct: 568 FSPNGQLIATASSDG--TIRLW---DRQGRQKTVITGHKGNIYRVTFSPDGQ-LIASASQ 621 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D ++++ Q T + N+ S S+SPDS ++ S R+ +++ +Q + Q Sbjct: 622 DNTAKVWNLQGQELMTLKGHNSSVY--SVSFSPDSKHLLTTS-RDDTARIWDLQGH---Q 675 Query: 339 KRISQDKEAS----YFDP---------------VWSPQGDLIAFTKFSGEKFAIGVMKKD 379 I + E S F P +W QG+L+ K S + F D Sbjct: 676 LAILKGHEKSIDHGVFSPDGQRIATASRDGTVRIWDNQGNLLKILKDSVDSFYSVSFSPD 735 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G +RL + W G+S+ + L G E L+ Y+ D Sbjct: 736 G--QRLASSAKDGTVRIWDNQGKSI----------------LTLKGHQE-LVKNVTYSHD 776 Query: 440 PQWVG 444 W+ Sbjct: 777 GNWIA 781 >gi|115452667|ref|NP_001049934.1| Os03g0314500 [Oryza sativa Japonica Group] gi|108707813|gb|ABF95608.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza sativa Japonica Group] gi|113548405|dbj|BAF11848.1| Os03g0314500 [Oryza sativa Japonica Group] gi|125586045|gb|EAZ26709.1| hypothetical protein OsJ_10615 [Oryza sativa Japonica Group] Length = 730 Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 27/169 (15%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-- 274 P FS + ++A+ D + V+L D++ R + S + +P + N K+ ++ Sbjct: 397 PTFSKDGSQLAFV---DNEFKSVWLADSQGMRVVFKTDGPDS-VFSPLW--NSKKDILYV 450 Query: 275 ----SVQKDEAMDIYSVDLQSNA---TERLTNTLFINISASYSPDSSQIVFESDREG--- 324 S + E ++I+S+ S + +LT F N S +PD ++ VF S R+G Sbjct: 451 CMGPSFKASETLEIHSIHNVSTGDRKSRQLTFGGFNNAFPSTNPDGTKFVFRSTRDGGAK 510 Query: 325 -KEQLYVMQ----SNGSD--QKRISQDKEASYFDPV--WSPQGDLIAFT 364 + LY+M+ G D Q +++ + D WSP G I F+ Sbjct: 511 YSKNLYIMEDADAGEGEDGSQSTVTRMTAGEWTDTHCQWSPNGKWIVFS 559 >gi|94967294|ref|YP_589342.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] gi|94549344|gb|ABF39268.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] Length = 894 Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 20/180 (11%) Query: 244 TRIDRAPKRIGN------FRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNA 293 T DR+ K +G+ F ++ L+P NG+ ++V K + D++ +DL A Sbjct: 609 TWFDRSGKSLGDVADPDYFGALSLSP----NGQS--LAVDKVDSGSQNTDVWLLDLHGGA 662 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 R+T I+ +SP +S+I F ++RE +Y +G + + + + Sbjct: 663 PRRITFDPSIDALPVWSPAASEIAFVTNRELHFSVYRKSVDGHATESVLINDLPDNYPND 722 Query: 354 WSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 WS G + +G + M K +E L S L+ +SP G+ + ++ + G Sbjct: 723 WSRDGKYFLYVHGTGLWYLTFSDMTK---KEFLNAGTSALKTGHFSPDGKWIAYASNESG 779 >gi|125543618|gb|EAY89757.1| hypothetical protein OsI_11300 [Oryza sativa Indica Group] Length = 737 Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 27/169 (15%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-- 274 P FS + ++A+ D + V+L D++ R + S + +P + N K+ ++ Sbjct: 404 PTFSKDGSQLAFV---DNEFKSVWLADSQGMRVVFKTDGPDS-VFSPLW--NSKKDILYV 457 Query: 275 ----SVQKDEAMDIYSVDLQSNA---TERLTNTLFINISASYSPDSSQIVFESDREG--- 324 S + E ++I+S+ S + +LT F N S +PD ++ VF S R+G Sbjct: 458 CMGPSFKASETLEIHSIHNVSTGDRKSRQLTFGGFNNAFPSTNPDGTKFVFRSTRDGGAK 517 Query: 325 -KEQLYVMQ----SNGSD--QKRISQDKEASYFDPV--WSPQGDLIAFT 364 + LY+M+ G D Q +++ + D WSP G I F+ Sbjct: 518 YSKNLYIMEDADAGEGEDGSQSTVTRMTAGEWTDTHCQWSPNGKWIVFS 566 >gi|254515665|ref|ZP_05127725.1| hypothetical protein NOR53_3058 [gamma proteobacterium NOR5-3] gi|219675387|gb|EED31753.1| hypothetical protein NOR53_3058 [gamma proteobacterium NOR5-3] Length = 817 Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust. Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 5/192 (2%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PR+SP+ + +A+ D +D + L +D + N + L P FS++G+ S Sbjct: 99 PRWSPDNKHLAFVRDDGQDTAVLVL---EVDSGKIAVINSPGIELDPEFSADGEYLYYSS 155 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 ++ I+ L S A ++LT+ + + P I++ L + Sbjct: 156 GASGSLSIWRYHLASGAEQQLTDLPHVERNIRRLPGRDSILYLHGSRAYRSLRLRDFVSG 215 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-- 394 + + Q+ + P L ++ + + + D + R + D A Sbjct: 216 EDSVVHQETLTYHLTSDAHPTQRLAVYSAPINGDYHLWTIDLDDPRARHRLTDGTRYALT 275 Query: 395 PTWSPSGRSLIF 406 P +S G S+ F Sbjct: 276 PAFSADGNSIYF 287 >gi|116754145|ref|YP_843263.1| periplasmic component of the Tol biopolymer transport system-like [Methanosaeta thermophila PT] gi|116665596|gb|ABK14623.1| Periplasmic component of the Tol biopolymer transport system-like protein [Methanosaeta thermophila PT] Length = 1202 Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust. Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 11/173 (6%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIVFESDREGKEQ 327 G + + ++ +D++ DL++ +L+ F Y D +V+ +R G +Q Sbjct: 376 GDYVIYTDMRNGNLDVFLYDLRAGNERQLSKDPF---DQRYPMIDGRYVVWMDNRTGSDQ 432 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +YV +++I+ ++A PV S GD I + K+ I + +E + Sbjct: 433 IYVYDVLQGSERQITTQQQAQLLSPVIS--GDRIVWADRRSGKWDIYMYNLTTGKETPIC 490 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGS----KLYSIDLNGRNETLINTPAY 436 + Q W G +++++ ++ S +YS +L ET I T Y Sbjct: 491 TNPANQVQPWI-HGNTIVWADGRNALNASIRNWDIYSYNLTTGKETPICTNGY 542 >gi|284166447|ref|YP_003404726.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haloterrigena turkmenica DSM 5511] gi|284016102|gb|ADB62053.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haloterrigena turkmenica DSM 5511] Length = 612 Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 307 ASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 AS+SP+ +++F D G E QL+ + + + + ++ EA + WS G+ AF Sbjct: 62 ASWSPERPELIFGMDEGGNERAQLFTLDAETGEIENVTAMPEAKHRWGGWSHDGERFAFA 121 Query: 365 KFSGEK--FAIGVMKKD--GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 ++ F I V +D G L+ E D L WSP L+ S+ + LY Sbjct: 122 SNRRDESVFDIYVQDRDETGDDADLVYEGDGWLSLSGWSPDDSRLLVSQAY-SNFDQDLY 180 Query: 420 SIDL 423 +DL Sbjct: 181 VLDL 184 >gi|221635973|ref|YP_002523849.1| peptidase S9, prolyl oligopeptidase active site domain protein [Thermomicrobium roseum DSM 5159] gi|221157355|gb|ACM06473.1| peptidase S9, prolyl oligopeptidase active site domain protein [Thermomicrobium roseum DSM 5159] Length = 667 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 22/142 (15%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASY----SPDSSQIVF------ESDREGKEQLYVM 331 +D V + NAT LT + + + +PD IV+ + + L+++ Sbjct: 3 LDSEEVKVSENATTILTVDELVTMQRPFDVEVAPDGETIVYVVRPVSREEEHWRSSLWIV 62 Query: 332 QSNGSDQKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQE-R 384 + ++ + D+E P WSP G IAF E K ++ ++ ++G + R Sbjct: 63 PFMEGEARQFTSGLWHDRE-----PRWSPDGGWIAFLSDRAERGKTSVYLIPRNGGEALR 117 Query: 385 LLVEDSNLQAPTWSPSGRSLIF 406 + + + +WSP GR L F Sbjct: 118 VFDQAGEIDNLSWSPDGRFLAF 139 >gi|166365544|ref|YP_001657817.1| hypothetical protein MAE_28030 [Microcystis aeruginosa NIES-843] gi|166087917|dbj|BAG02625.1| hypothetical protein MAE_28030 [Microcystis aeruginosa NIES-843] Length = 173 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 16/128 (12%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRI------SQDKEASYFDPVWSPQGDLIAFTKF 366 S +VF SDR G + +Y+ + D++ + S D+ AS P S G I FT Sbjct: 51 SRYLVFASDRNGSQAIYLF--DAIDRRLLPLPGLNSLDQIAS--SPSISEDGRYIVFTAS 106 Query: 367 SGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K AI + + Q R + D + ++ P S G + F K+G +Y DL+ Sbjct: 107 RQGKTAIYLYDRQTQQRREIAPDLLAEVRNPIISADGSKVAFEAAKNGQWDIMIY--DLS 164 Query: 425 GRNETLIN 432 GR L+N Sbjct: 165 GR--VLVN 170 >gi|159898283|ref|YP_001544530.1| hypothetical protein Haur_1759 [Herpetosiphon aurantiacus ATCC 23779] gi|159891322|gb|ABX04402.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC 23779] Length = 463 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 19/129 (14%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A SP+ ++I + +R L+V +G +++ ++Q+ + P WSP +A Sbjct: 154 ARVSPNGTKIAYLDNRT----LFVADRDGENRQALTQNVNEA---PRWSPDSTALAVVSG 206 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQA---------PTWSPSGRSLIFSRKKDGDTGSK 417 S + D +L+V D N + P WSP G+ L + GD Sbjct: 207 SPDNRYPLACAND---SQLIVVDLNSNSSTTLAQGCQPAWSPDGKRLAYVSPTIGDINEG 263 Query: 418 LYSIDLNGR 426 ++ L GR Sbjct: 264 FNTVGLIGR 272 >gi|170728810|ref|YP_001762836.1| peptidase S9 prolyl oligopeptidase [Shewanella woodyi ATCC 51908] gi|169814157|gb|ACA88741.1| peptidase S9 prolyl oligopeptidase active site domain protein [Shewanella woodyi ATCC 51908] Length = 681 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 373 IGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY--SIDLNGRNET 429 + + KDGS +R L + + P +SP + L F K+D D ++Y +D G + Sbjct: 73 LWLFAKDGSSQRPLTAKGLRVSEPVFSPDSKVLAFVSKRDEDEDGQIYLLPMDRAGEAQR 132 Query: 430 LINTPAYASDPQWVG 444 L + P +WVG Sbjct: 133 LTDVPGGVKGVKWVG 147 >gi|260946625|ref|XP_002617610.1| hypothetical protein CLUG_03054 [Clavispora lusitaniae ATCC 42720] gi|238849464|gb|EEQ38928.1| hypothetical protein CLUG_03054 [Clavispora lusitaniae ATCC 42720] Length = 802 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 22/101 (21%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 + +D++S A E L+ ++ +A ++P S +I F D + +Y+ + + +RI++ Sbjct: 178 FWVLDVESQAIEPLSGKDLVS-TALWAPTSDKIAFVLDND----VYIRHLHAAKVERITK 232 Query: 344 DKEASYFDP-----------------VWSPQGDLIAFTKFS 367 D + F+ WSPQGD +AF +F+ Sbjct: 233 DGSVNIFNGKPDWVYEEEVFAADIAMWWSPQGDKVAFLRFN 273 >gi|269928695|ref|YP_003321016.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269788052|gb|ACZ40194.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 647 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 16/107 (14%) Query: 310 SPDSSQIVFESDREGKEQ------LYVMQSNGSDQKRISQDKEASYFD---PVWSPQGDL 360 SPD +I F KE+ ++V+ G + ++ + A +D P WSP G Sbjct: 31 SPDGERIAFTLRPVSKEKEHPESAIWVVSFAGGEPRQFT----AGQWDDEEPRWSPDGRR 86 Query: 361 IAFTKFSGE--KFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSL 404 +AF E K ++ +M DG + R+ + +++ +WSP GR L Sbjct: 87 LAFLSDRAERGKKSVYIMPADGGEARRVFDQQGDMEQLSWSPDGRFL 133 >gi|329928644|ref|ZP_08282498.1| WD40-like protein [Paenibacillus sp. HGF5] gi|328937607|gb|EGG34022.1| WD40-like protein [Paenibacillus sp. HGF5] Length = 240 Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 351 DPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DPV SP IA+ K G + I ++ G Q+ AP WSP G L Sbjct: 20 DPVVSPASGAIAYVHKSVSEKHDGYRSHIRLLPAGGDQDIPFTSGEADAAPAWSPDGSEL 79 Query: 405 IFSRKK 410 F RKK Sbjct: 80 AFLRKK 85 >gi|94968180|ref|YP_590228.1| peptidase S9, prolyl oligopeptidase active site region [Candidatus Koribacter versatilis Ellin345] gi|94550230|gb|ABF40154.1| peptidase S9, prolyl oligopeptidase active site region [Candidatus Koribacter versatilis Ellin345] Length = 750 Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD + + K + + +G Q + + +P WSP G +AF + Sbjct: 207 SPDGKWAAWAN----KTGILLAPIDGKQQAKKLNELRGELSEPRWSPDGKRLAFVVNRTD 262 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRK 409 IG+ + G++ R L +N P WS G+ + F R+ Sbjct: 263 HSFIGLQEIGGTEVRYLAPSTNRDDLPRWSADGKQIAFVRQ 303 Searching..................................................done Results from round 2 >gi|254780548|ref|YP_003064961.1| translocation protein TolB [Candidatus Liberibacter asiaticus str. psy62] gi|254040225|gb|ACT57021.1| translocation protein TolB [Candidatus Liberibacter asiaticus str. psy62] Length = 447 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 447/447 (100%), Positives = 447/447 (100%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE Sbjct: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG Sbjct: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV Sbjct: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY Sbjct: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT Sbjct: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL Sbjct: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS Sbjct: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDLNGRNETLINTPAYASDPQWVGFMD Sbjct: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 >gi|15966492|ref|NP_386845.1| translocation protein TolB [Sinorhizobium meliloti 1021] gi|32699712|sp|Q926C2|TOLB_RHIME RecName: Full=Protein tolB; Flags: Precursor gi|15075763|emb|CAC47318.1| Probable TolB protein precursor [Sinorhizobium meliloti 1021] Length = 436 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 215/447 (48%), Positives = 299/447 (66%), Gaps = 13/447 (2%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M R F L ++LV G + +A V++ N N P+ IA T F+ E Sbjct: 3 MLRRNFFR--------LLMVLVAGCGLIASPANALVEININKGNVEPLPIAITDFL-QGE 53 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 L K+S V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LV GRV +EG Sbjct: 54 LAQKISGVIAADLKRSGLFAPIDKGAFIEKISNPDATPRFEDWKVINAQALVIGRVTQEG 113 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 RL+ EFRLWD +Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V Sbjct: 114 DGRLKAEFRLWDTFAGQQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYV 173 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +ES K L +MD+DGAN R LT S D I+ PRFSPN+Q++ Y +++++ RVY Sbjct: 174 AESGPKNARKRQLAIMDQDGANSRALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVY 231 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L+ + + +GNF M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT Sbjct: 232 LLQLETGQ-REVVGNFPGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNT 290 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S SYSPD S+IVFESDR GK+QLYVM ++GS Q RIS + SY PVWSP+GDL Sbjct: 291 AAIDTSPSYSPDGSRIVFESDRGGKQQLYVMGADGSGQTRISF-GDGSYSTPVWSPRGDL 349 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK SG KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYS Sbjct: 350 IAFTKQSGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYS 409 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL G NE L+ T +ASDP W M+ Sbjct: 410 IDLTGYNEQLVQTQGFASDPAWSPLME 436 >gi|307300471|ref|ZP_07580251.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti BL225C] gi|307318336|ref|ZP_07597771.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti AK83] gi|306896018|gb|EFN26769.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti AK83] gi|306904637|gb|EFN35221.1| Tol-Pal system beta propeller repeat protein TolB [Sinorhizobium meliloti BL225C] Length = 434 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 215/447 (48%), Positives = 299/447 (66%), Gaps = 13/447 (2%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M R F L ++LV G + +A V++ N N P+ IA T F+ E Sbjct: 1 MLRRNFFR--------LLMVLVAGCGLIASPANALVEININKGNVEPLPIAITDFL-QGE 51 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 L K+S V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LV GRV +EG Sbjct: 52 LAQKISGVIAADLKRSGLFAPIDKGAFIEKISNPDATPRFEDWKVINAQALVIGRVTQEG 111 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 RL+ EFRLWD +Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V Sbjct: 112 DGRLKAEFRLWDTFAGQQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYV 171 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +ES K L +MD+DGAN R LT S D I+ PRFSPN+Q++ Y +++++ RVY Sbjct: 172 AESGPKNARKRQLAIMDQDGANSRALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVY 229 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L+ + + +GNF M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT Sbjct: 230 LLQLETGQ-REVVGNFPGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNT 288 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S SYSPD S+IVFESDR GK+QLYVM ++GS Q RIS + SY PVWSP+GDL Sbjct: 289 AAIDTSPSYSPDGSRIVFESDRGGKQQLYVMGADGSGQTRISF-GDGSYSTPVWSPRGDL 347 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK SG KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYS Sbjct: 348 IAFTKQSGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYS 407 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL G NE L+ T +ASDP W M+ Sbjct: 408 IDLTGYNEQLVQTQGFASDPAWSPLME 434 >gi|150397825|ref|YP_001328292.1| translocation protein TolB [Sinorhizobium medicae WSM419] gi|166229991|sp|A6UCS7|TOLB_SINMW RecName: Full=Protein tolB; Flags: Precursor gi|150029340|gb|ABR61457.1| Tol-Pal system beta propeller repeat TolB [Sinorhizobium medicae WSM419] Length = 436 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 213/447 (47%), Positives = 299/447 (66%), Gaps = 13/447 (2%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M R F L ++LV G + A V++ N N P+ IA T FV E Sbjct: 3 MLRRNFFR--------LLMVLVAGCGLIASPAKALVEIDINKGNVEPLPIAITDFV-QGE 53 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 L K+S+V++ DL+RS +F I++ +F +K++NPD+ PRF+DW + AQ LV GRV KEG Sbjct: 54 LAQKISDVIAADLKRSGLFAPINKGAFIEKVSNPDATPRFEDWKVINAQALVIGRVTKEG 113 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 RL+ EFRLWD Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V Sbjct: 114 DGRLKAEFRLWDTFAGTQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYV 173 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +ES + L +MD+DGAN R LT S D I+ PRFSPN+Q++ Y +++++ RVY Sbjct: 174 AESGPKNARQRQLAIMDQDGANSRALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVY 231 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L+ + + +GNF M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT Sbjct: 232 LLQLETGQ-REVVGNFPGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNT 290 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S SYSPD S++VFESDR G++QLYVM ++GS Q RIS + SY PVWSP+GDL Sbjct: 291 AAIDTSPSYSPDGSRVVFESDRGGRQQLYVMGADGSGQTRISF-GDGSYSTPVWSPRGDL 349 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK SG KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYS Sbjct: 350 IAFTKQSGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYS 409 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL G NE L+ T +ASDP W M+ Sbjct: 410 IDLTGYNEQLVPTQGFASDPAWSPLME 436 >gi|332716443|ref|YP_004443909.1| protein tolB precursor [Agrobacterium sp. H13-3] gi|325063128|gb|ADY66818.1| protein tolB precursor [Agrobacterium sp. H13-3] Length = 443 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 209/433 (48%), Positives = 292/433 (67%), Gaps = 4/433 (0%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 I L L + + F A V++ N N P+ IA T F+S D +G +VS V++ DLQ Sbjct: 15 IRLVLAVAALMSVFSAPAFARVEININKGNVEPLPIAITDFISGDGIGAQVSAVIAADLQ 74 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F +++ +F +KI NPD PRF+DW + AQ LVTGRV +E RLR EFRLWD Sbjct: 75 RSGLFAPVNKSAFIEKIANPDQQPRFEDWKVINAQALVTGRVTRESDGRLRAEFRLWDTF 134 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q+ G++FF+ P +WR++AH I+D IY+ +TGEKG F++R++FVSES K L Sbjct: 135 AGQQMTGQQFFTQPENWRRVAHIIADAIYERVTGEKGYFDTRVVFVSESGPKTARKRQLS 194 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DG N+R LT S D I+ PRFSPN+Q+V Y +++ RVYL+ + + +G Sbjct: 195 IMDQDGFNVRNLTNSND-IVLTPRFSPNRQEVTYMSFE-GQQPRVYLLQLETGQ-REVVG 251 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLTNT I+ + S+SPD Sbjct: 252 NFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRTTTRLTNTSAIDTAPSFSPDGQ 311 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++ FESDR G++Q+YVM ++GS Q+RIS + SY PVWSP+GDLIAFTK SG KF+IG Sbjct: 312 RVAFESDRGGRQQIYVMNADGSGQQRISF-GDGSYSTPVWSPRGDLIAFTKQSGGKFSIG 370 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE LI TP Sbjct: 371 VMKTDGSGERILTSGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLIKTP 430 Query: 435 AYASDPQWVGFMD 447 +ASDP W +D Sbjct: 431 TFASDPAWSPLLD 443 >gi|163758790|ref|ZP_02165877.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43] gi|162284080|gb|EDQ34364.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43] Length = 450 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 208/448 (46%), Positives = 307/448 (68%), Gaps = 5/448 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTS-IHAFVKVATNSANYSPVSIAFTKFVSID 59 M+L+ +N + +V F +S A V++ N AN P+ IA T F+S D Sbjct: 7 MALKGCTMNLMNRLVLFPFAIVAALAFLASSPARAVVEIDINRANVEPLPIAITDFLSDD 66 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 +G ++S VV+ DL+RS +F I++ +F ++I+NPD+ PRF+DW + AQ LV GRV++E Sbjct: 67 AIGAQISAVVAADLKRSGLFAPIAKGAFIERISNPDASPRFEDWRVINAQALVVGRVVRE 126 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 RLR EFRLWD +Q+ G++FF+SP +WR++AH I+D IY+ +TGEKG F+SR++F Sbjct: 127 SDGRLRAEFRLWDTFASQQLTGEQFFTSPENWRRVAHIIADAIYERLTGEKGYFDSRVVF 186 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VSES + L +MD+DGAN+R LT + I+ PRFSP++Q++ Y +++ RV Sbjct: 187 VSESGPKTDRQKQLAIMDQDGANVRMLTDASS-IVLTPRFSPSRQEITYMSFEGGQP-RV 244 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL+ + + +GNF M +PRFS +G++ ++S+Q+D +IY++DL+S AT RLT+ Sbjct: 245 YLLQLETGQ-RELVGNFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRATTRLTS 303 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 T I+ S SYSPD +QIVFESDR G++QLY+M ++GS+Q+R+S + SY PVWSP+GD Sbjct: 304 TAAIDTSPSYSPDGTQIVFESDRGGRQQLYIMNADGSNQRRVSF-GDGSYSTPVWSPRGD 362 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 LIAFTK SG KF+IGVM+ DGS ER+L + + PTW+P+GR L+F R+ G G ++Y Sbjct: 363 LIAFTKQSGGKFSIGVMRTDGSGERILTTGFHNEGPTWAPNGRVLMFFRQPAGAGGPQIY 422 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 SIDL G NE L++TP +ASDP W ++ Sbjct: 423 SIDLTGYNEQLVSTPTFASDPAWSPLLE 450 >gi|159185873|ref|NP_356906.2| translocation protein TolB [Agrobacterium tumefaciens str. C58] gi|32699707|sp|Q8U9L4|TOLB_AGRT5 RecName: Full=Protein tolB; Flags: Precursor gi|159141007|gb|AAK89691.2| tolB protein [Agrobacterium tumefaciens str. C58] Length = 435 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 209/433 (48%), Positives = 294/433 (67%), Gaps = 4/433 (0%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 I L L + + F A V++ N N P+ IA T F+S D +G +VS V++ DLQ Sbjct: 7 IRLVLAIAALMSVFSAPAFARVEININKGNVEPLPIAITDFMSSDGIGAQVSAVIAADLQ 66 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F +++++F +KI+NPD PRF+DW + AQ LVTGRV +E RLR EFRLWD Sbjct: 67 RSGLFAPVNKNAFIEKISNPDQQPRFEDWKVINAQALVTGRVTRESDGRLRAEFRLWDTF 126 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q+ G++FF+ P +WR++AH I+D IY+ +TGEKG F++R++FVSES K L Sbjct: 127 AGQQLSGQQFFTQPENWRRVAHIIADAIYERVTGEKGYFDTRVVFVSESGPKTARKRQLS 186 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DG N+R LT S D I+ PRFSPN+Q+V Y +++ RVYL+ + + +G Sbjct: 187 IMDQDGFNVRNLTNSND-IVLTPRFSPNRQEVTYMSFE-GQQPRVYLLQLETGQ-REVVG 243 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLTNT I+ + SYSPD Sbjct: 244 NFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRTTTRLTNTAAIDTAPSYSPDGQ 303 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++ FESDR G++Q+YVM ++GS Q+R+S + SY PVWSP+GDLIAFTK SG KF+IG Sbjct: 304 RVAFESDRGGRQQIYVMNADGSGQQRVSF-GDGSYSTPVWSPRGDLIAFTKQSGGKFSIG 362 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE LI TP Sbjct: 363 VMKTDGSGERILTSGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLIKTP 422 Query: 435 AYASDPQWVGFMD 447 +ASDP W +D Sbjct: 423 TFASDPAWSPLLD 435 >gi|239832783|ref|ZP_04681112.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum intermedium LMG 3301] gi|239825050|gb|EEQ96618.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum intermedium LMG 3301] Length = 475 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 202/442 (45%), Positives = 294/442 (66%), Gaps = 5/442 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 I ++ + ++ A V++ N P+ IA T F+S D+LG ++ Sbjct: 38 INTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQLGPNIT 97 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ RL+ Sbjct: 98 SVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKA 157 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV ES + Sbjct: 158 EFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVDESGPA 217 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD+DGAN+RY++ R I PRFSPN+Q+V Y +Y+ +VYL+ Sbjct: 218 QKRVKRLAIMDQDGANVRYISDGR-AISLTPRFSPNRQEVTYMSYE-GGTPKVYLLQLET 275 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ +T RLTN+ I+ Sbjct: 276 GQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTTRLTNSQAIDT 334 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDLIAFTK Sbjct: 335 GASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDLIAFTK 393 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++IDL G Sbjct: 394 QSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTG 453 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RNE I TP +ASDP W ++ Sbjct: 454 RNERQIQTPNFASDPAWSPLLE 475 >gi|227823308|ref|YP_002827280.1| translocation protein TolB [Sinorhizobium fredii NGR234] gi|227342309|gb|ACP26527.1| TolB protein precursor [Sinorhizobium fredii NGR234] Length = 457 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 214/440 (48%), Positives = 295/440 (67%), Gaps = 5/440 (1%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 E L LV G F +A V++ N N P+ +A T F+ ELG K+S+ Sbjct: 23 MEMLRRNFFRLFTLVFAGVLFAAPANAVVEININKGNVEPLPVAITDFL-QGELGQKISD 81 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV+ DL+RS +F I + +F +KI NPD+ PRF+DW + AQ LVTGRV +EG RL+ E Sbjct: 82 VVAADLKRSGLFAPIDKGAFIEKIANPDAAPRFEDWKVINAQALVTGRVTQEGDGRLKAE 141 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q++G++F++ P +WR++AH I+D IY+ ITGEKG F++RI++V+ES Sbjct: 142 FRLWDTFAGQQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPKN 201 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L +MD+DG N R LT S D I+ PRFSPN+Q++ Y +++++ RVYL+ Sbjct: 202 ARKRQLAIMDQDGFNARALTNSND-IVLTPRFSPNRQEITYMSFENQQP-RVYLLQLETG 259 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M APRFS +G+R ++S+Q++ +IY++DL+S T RLTNT I+ S Sbjct: 260 Q-REVVGNFPGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTNAIDTSP 318 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD ++IVFESDR GK+QLYVM ++GS Q RIS + SY PVWSP+GDLIAFTK S Sbjct: 319 SYSPDGARIVFESDRGGKQQLYVMGADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQS 377 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G N Sbjct: 378 GGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYN 437 Query: 428 ETLINTPAYASDPQWVGFMD 447 E I T +ASDP W M+ Sbjct: 438 EQQIQTQGFASDPAWSPLME 457 >gi|315122876|ref|YP_004063365.1| translocation protein TolB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496278|gb|ADR52877.1| translocation protein TolB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 435 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 315/435 (72%), Positives = 369/435 (84%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M + + LLLVL+ GFF + A VKV N+++YSPVSIA T FVS+DELGGK SEV+SK+ Sbjct: 1 MNVKIFLLLVLVSGFFSVPVQALVKVNVNNSDYSPVSIAVTDFVSLDELGGKFSEVISKN 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQ+SDVF I Q SFKQKITNPD PRF DW SLGAQVLV GRVIKEGKDRLRVEFRLWD Sbjct: 61 LQKSDVFTQIPQGSFKQKITNPDITPRFHDWQSLGAQVLVMGRVIKEGKDRLRVEFRLWD 120 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 +KDRKQI+GKKFF+SP WR++AH ISD+IYQ+ITGEK FN+R+LFVSES+VSG+IKN Sbjct: 121 IKDRKQILGKKFFASPVDWRRLAHIISDEIYQNITGEKSYFNTRLLFVSESIVSGVIKNR 180 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 LC+MD+DG N+RYLTP+ D+ILF P+F P QQKVAYA+YDDEDIL+VYLMD RIDRAPKR Sbjct: 181 LCLMDQDGFNVRYLTPNSDRILFTPQFYPKQQKVAYASYDDEDILKVYLMDIRIDRAPKR 240 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 IGNFR M ++PRFS +G R ++ VQK+ A+D+Y+VD+ S A +RLTNTLF NIS SYSPD Sbjct: 241 IGNFRGMNISPRFSLDGNRVIMGVQKEGAIDLYNVDVHSYAFKRLTNTLFANISPSYSPD 300 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 SSQIVFESDREGK+QLYVMQS+GSDQ+RISQDK+A YFDP WSP ++IAFTKFS KFA Sbjct: 301 SSQIVFESDREGKQQLYVMQSDGSDQRRISQDKDAFYFDPSWSPNDNIIAFTKFSEGKFA 360 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IGVM+ DGSQER+LV D NLQ P WSP+GRSLIF+RKK D GSKLYSI+LNGRNE LIN Sbjct: 361 IGVMRVDGSQERILVTDFNLQTPIWSPNGRSLIFARKKMDDIGSKLYSINLNGRNEMLIN 420 Query: 433 TPAYASDPQWVGFMD 447 TPAYA DP W+ +D Sbjct: 421 TPAYALDPHWIAPVD 435 >gi|153008549|ref|YP_001369764.1| translocation protein TolB [Ochrobactrum anthropi ATCC 49188] gi|166229982|sp|A6WY81|TOLB_OCHA4 RecName: Full=Protein tolB; Flags: Precursor gi|151560437|gb|ABS13935.1| Tol-Pal system beta propeller repeat TolB [Ochrobactrum anthropi ATCC 49188] Length = 443 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 202/447 (45%), Positives = 295/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GPNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+RY++ R I PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRYISDGR-AISLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ +T RLTN+ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTTRLTNS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ SASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTSASYSPDGSQIVFSSDRGGRPQLYVMGADGSNPRRIS-AGDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|114706798|ref|ZP_01439698.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506] gi|114537746|gb|EAU40870.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506] Length = 441 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 202/442 (45%), Positives = 290/442 (65%), Gaps = 5/442 (1%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPT-SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK 64 F + ++ L+ + + F + A V + + N P+ IA T F S D +G + Sbjct: 3 FSRTSIMRTLSAALVTLGMACFMAMGTAQARVTIDISGGNVEPLPIAITDFQSQDGIGAQ 62 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S VV DL+RS +F I + +F Q PD+ P FQDW + AQ LV GRV +E RL Sbjct: 63 ISSVVEADLKRSGLFAPIDKAAFIQTGLTPDTSPSFQDWTVINAQALVVGRVAREADGRL 122 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVEFRLWD +Q+ G++F++ P WR+IAH I+D +Y+ ITGE G F+SR++FVSES Sbjct: 123 RVEFRLWDTFAGQQMDGQQFYADPNDWRRIAHIIADAVYKQITGENGYFDSRVVFVSESG 182 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L +MD+DGAN+RYLT +D ++ PRFSPN+Q++ Y ++ + + RVYL+ Sbjct: 183 NKANRVKRLAIMDQDGANLRYLTEGQD-LVLTPRFSPNRQEITYMSFGNGEP-RVYLLQL 240 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + +GNF M +PRFS +G++ ++S+Q+D +IY++DL+S AT+RLTNT I+ Sbjct: 241 ETGQ-REIVGNFPGMTFSPRFSPDGQKVVMSLQQDGNANIYAMDLRSRATQRLTNTAAID 299 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S SYSPD +IVFESDR G++QLY M ++GS+Q+RIS + SY PVWSP+GDLIAFT Sbjct: 300 TSPSYSPDGGRIVFESDRGGRQQLYTMNADGSNQQRISF-GDGSYSTPVWSPRGDLIAFT 358 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K SG +F IGVM+ DGS ER+L + + PTW+P+GR L+F R + G G +L+SIDL+ Sbjct: 359 KQSGGQFQIGVMRPDGSGERILTTGYHNEGPTWAPNGRVLMFFRDQRGGGGPELWSIDLS 418 Query: 425 GRNETLINTPAYASDPQWVGFM 446 GRNE + T +ASDP W + Sbjct: 419 GRNEQKVPTNGFASDPAWSPVL 440 >gi|306841416|ref|ZP_07474118.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO2] gi|306844689|ref|ZP_07477274.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO1] gi|306274861|gb|EFM56631.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO1] gi|306288522|gb|EFM59874.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. BO2] Length = 443 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 198/447 (44%), Positives = 293/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|62290569|ref|YP_222362.1| translocation protein TolB [Brucella abortus bv. 1 str. 9-941] gi|82700485|ref|YP_415059.1| translocation protein TolB [Brucella melitensis biovar Abortus 2308] gi|189024787|ref|YP_001935555.1| translocation protein TolB [Brucella abortus S19] gi|225628265|ref|ZP_03786299.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti str. Cudo] gi|225853152|ref|YP_002733385.1| translocation protein TolB [Brucella melitensis ATCC 23457] gi|237816074|ref|ZP_04595070.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus str. 2308 A] gi|254689865|ref|ZP_05153119.1| translocation protein TolB [Brucella abortus bv. 6 str. 870] gi|254694358|ref|ZP_05156186.1| translocation protein TolB [Brucella abortus bv. 3 str. Tulya] gi|254698016|ref|ZP_05159844.1| translocation protein TolB [Brucella abortus bv. 2 str. 86/8/59] gi|254700358|ref|ZP_05162186.1| translocation protein TolB [Brucella suis bv. 5 str. 513] gi|254730900|ref|ZP_05189478.1| translocation protein TolB [Brucella abortus bv. 4 str. 292] gi|256061734|ref|ZP_05451871.1| translocation protein TolB [Brucella neotomae 5K33] gi|256114265|ref|ZP_05455010.1| translocation protein TolB [Brucella melitensis bv. 3 str. Ether] gi|256160412|ref|ZP_05458101.1| translocation protein TolB [Brucella ceti M490/95/1] gi|256255618|ref|ZP_05461154.1| translocation protein TolB [Brucella ceti B1/94] gi|256258119|ref|ZP_05463655.1| translocation protein TolB [Brucella abortus bv. 9 str. C68] gi|256263356|ref|ZP_05465888.1| protein tolB [Brucella melitensis bv. 2 str. 63/9] gi|256370106|ref|YP_003107617.1| translocation protein TolB precursor [Brucella microti CCM 4915] gi|260167912|ref|ZP_05754723.1| translocation protein TolB [Brucella sp. F5/99] gi|260547187|ref|ZP_05822925.1| tolB [Brucella abortus NCTC 8038] gi|260755396|ref|ZP_05867744.1| protein tolB [Brucella abortus bv. 6 str. 870] gi|260758618|ref|ZP_05870966.1| protein tolB [Brucella abortus bv. 4 str. 292] gi|260762450|ref|ZP_05874787.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59] gi|260884412|ref|ZP_05896026.1| protein tolB [Brucella abortus bv. 9 str. C68] gi|261214667|ref|ZP_05928948.1| protein tolB [Brucella abortus bv. 3 str. Tulya] gi|261222821|ref|ZP_05937102.1| protein tolB [Brucella ceti B1/94] gi|261325738|ref|ZP_05964935.1| protein tolB [Brucella neotomae 5K33] gi|261750852|ref|ZP_05994561.1| protein tolB [Brucella suis bv. 5 str. 513] gi|261757350|ref|ZP_06001059.1| protein tolB [Brucella sp. F5/99] gi|265995569|ref|ZP_06108126.1| protein tolB [Brucella melitensis bv. 3 str. Ether] gi|265998780|ref|ZP_06111337.1| protein tolB [Brucella ceti M490/95/1] gi|294850948|ref|ZP_06791624.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp. NVSL 07-0026] gi|297248968|ref|ZP_06932676.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus bv. 5 str. B3196] gi|75496344|sp|Q57BI3|TOLB_BRUAB RecName: Full=Protein tolB; Flags: Precursor gi|119371037|sp|Q2YRD7|TOLB_BRUA2 RecName: Full=Protein tolB; Flags: Precursor gi|226705866|sp|B2S7D4|TOLB_BRUA1 RecName: Full=Protein tolB; Flags: Precursor gi|254764838|sp|C0REV9|TOLB_BRUMB RecName: Full=Protein tolB; Flags: Precursor gi|62196701|gb|AAX75001.1| TolB, tolB protein [Brucella abortus bv. 1 str. 9-941] gi|82616586|emb|CAJ11665.1| TolB, N-terminal [Brucella melitensis biovar Abortus 2308] gi|189020359|gb|ACD73081.1| TolB, N-terminal [Brucella abortus S19] gi|225616111|gb|EEH13159.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti str. Cudo] gi|225641517|gb|ACO01431.1| Tol-Pal system beta propeller repeat protein TolB [Brucella melitensis ATCC 23457] gi|237788737|gb|EEP62949.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus str. 2308 A] gi|256000269|gb|ACU48668.1| translocation protein TolB precursor [Brucella microti CCM 4915] gi|260095552|gb|EEW79430.1| tolB [Brucella abortus NCTC 8038] gi|260668936|gb|EEX55876.1| protein tolB [Brucella abortus bv. 4 str. 292] gi|260672876|gb|EEX59697.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59] gi|260675504|gb|EEX62325.1| protein tolB [Brucella abortus bv. 6 str. 870] gi|260873940|gb|EEX81009.1| protein tolB [Brucella abortus bv. 9 str. C68] gi|260916274|gb|EEX83135.1| protein tolB [Brucella abortus bv. 3 str. Tulya] gi|260921405|gb|EEX88058.1| protein tolB [Brucella ceti B1/94] gi|261301718|gb|EEY05215.1| protein tolB [Brucella neotomae 5K33] gi|261737334|gb|EEY25330.1| protein tolB [Brucella sp. F5/99] gi|261740605|gb|EEY28531.1| protein tolB [Brucella suis bv. 5 str. 513] gi|262553469|gb|EEZ09238.1| protein tolB [Brucella ceti M490/95/1] gi|262766853|gb|EEZ12471.1| protein tolB [Brucella melitensis bv. 3 str. Ether] gi|263093355|gb|EEZ17424.1| protein tolB [Brucella melitensis bv. 2 str. 63/9] gi|294821591|gb|EFG38587.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp. NVSL 07-0026] gi|297174101|gb|EFH33458.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus bv. 5 str. B3196] gi|326409710|gb|ADZ66775.1| TolB, N-terminal protein [Brucella melitensis M28] gi|326539417|gb|ADZ87632.1| Tol-Pal system beta propeller repeat protein TolB [Brucella melitensis M5-90] Length = 443 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 293/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|254719700|ref|ZP_05181511.1| translocation protein TolB [Brucella sp. 83/13] gi|265984714|ref|ZP_06097449.1| tolB [Brucella sp. 83/13] gi|306837841|ref|ZP_07470703.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF 2653] gi|264663306|gb|EEZ33567.1| tolB [Brucella sp. 83/13] gi|306407080|gb|EFM63297.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF 2653] Length = 443 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 292/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TGEKG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGEKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+ +++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVSFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|17986622|ref|NP_539256.1| translocation protein TolB [Brucella melitensis bv. 1 str. 16M] gi|256045307|ref|ZP_05448201.1| translocation protein TolB [Brucella melitensis bv. 1 str. Rev.1] gi|260565802|ref|ZP_05836285.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991732|ref|ZP_06104289.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1] gi|32699715|sp|Q93TG4|TOLB_BRUME RecName: Full=Protein tolB; Flags: Precursor gi|13898976|gb|AAK48918.1|AF358662_5 TolB protein [Brucella melitensis] gi|17982236|gb|AAL51520.1| tolb protein [Brucella melitensis bv. 1 str. 16M] gi|260151175|gb|EEW86270.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263002688|gb|EEZ15091.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1] Length = 443 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 292/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDTGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|254703475|ref|ZP_05165303.1| translocation protein TolB [Brucella suis bv. 3 str. 686] gi|261754105|ref|ZP_05997814.1| protein tolB [Brucella suis bv. 3 str. 686] gi|261743858|gb|EEY31784.1| protein tolB [Brucella suis bv. 3 str. 686] Length = 443 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 196/447 (43%), Positives = 291/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EF LWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFHLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT+ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSN 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|23502555|ref|NP_698682.1| translocation protein TolB [Brucella suis 1330] gi|32699703|sp|Q8FZ07|TOLB_BRUSU RecName: Full=Protein tolB; Flags: Precursor gi|23348555|gb|AAN30597.1| tolB protein [Brucella suis 1330] Length = 443 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 196/447 (43%), Positives = 292/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EF LWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFHLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|148560006|ref|YP_001259549.1| translocation protein TolB [Brucella ovis ATCC 25840] gi|166229975|sp|A5VS52|TOLB_BRUO2 RecName: Full=Protein tolB; Flags: Precursor gi|148371263|gb|ABQ61242.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ovis ATCC 25840] Length = 443 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 292/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNWQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|254714558|ref|ZP_05176369.1| translocation protein TolB [Brucella ceti M644/93/1] gi|254717455|ref|ZP_05179266.1| translocation protein TolB [Brucella ceti M13/05/1] gi|261219286|ref|ZP_05933567.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261322347|ref|ZP_05961544.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260924375|gb|EEX90943.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295037|gb|EEX98533.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 443 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 196/447 (43%), Positives = 293/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSP+ SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPNGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|90418976|ref|ZP_01226887.1| tolB protein, periplasmic component, biopolymer transport system [Aurantimonas manganoxydans SI85-9A1] gi|90337056|gb|EAS50761.1| tolB protein, periplasmic component, biopolymer transport system [Aurantimonas manganoxydans SI85-9A1] Length = 436 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 199/437 (45%), Positives = 286/437 (65%), Gaps = 7/437 (1%) Query: 11 LNMKINLCLLLVLIGG---FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 + M I L++ + A V++ N P+ IA T F S D +G ++S+ Sbjct: 1 MKMIIKGALVIAMAISGAFVALAPAAAAVEIDVTQGNVEPLPIAITDFQSADGIGKQISD 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL+RS +F I + +F Q D+ P F+DW + AQ LV GRV E RLRVE Sbjct: 61 VVQADLKRSGLFAPIDRAAFIQSGLTTDTTPSFKDWTVINAQALVVGRVSPEADGRLRVE 120 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++F+++P +WR++AH I+D IY+ +TGEKG F++RI+FV+ES Sbjct: 121 FRLWDTFAGQQLDGQQFYTNPENWRRVAHIIADAIYERLTGEKGYFDTRIVFVAESGTKD 180 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L +MD+DGAN+RYLT + ++ PRFSP++Q+V Y ++ + + RVYL+ Sbjct: 181 KRVKRLAIMDQDGANLRYLTDGSE-LVLTPRFSPSRQEVTYMSFGNGEP-RVYLLQLETG 238 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S AT RLT+T I+ S Sbjct: 239 Q-REIVGNFPGMTFSPRFSPDGQKVIMSLQQEGNANIYAMDLRSRATTRLTSTTAIDTSP 297 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD +IVFESDR G++QLYVM ++GS Q+RIS + SY PVWSP+GDLIAFTK S Sbjct: 298 SYSPDGRRIVFESDRGGRQQLYVMGADGSGQQRISF-GDGSYSTPVWSPRGDLIAFTKQS 356 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G +F IGVM+ DGS ER+L + + PTW+P+GR ++F R + G G +LYSIDL G N Sbjct: 357 GGQFQIGVMRPDGSGERILTSGFHNEGPTWAPNGRVVMFFRDQRGGGGPQLYSIDLTGYN 416 Query: 428 ETLINTPAYASDPQWVG 444 E I TP+YASDP W Sbjct: 417 EQKIPTPSYASDPAWSP 433 >gi|254708436|ref|ZP_05170264.1| translocation protein TolB [Brucella pinnipedialis M163/99/10] gi|254708711|ref|ZP_05170522.1| translocation protein TolB [Brucella pinnipedialis B2/94] gi|256030237|ref|ZP_05443851.1| translocation protein TolB [Brucella pinnipedialis M292/94/1] gi|261315936|ref|ZP_05955133.1| translocation protein TolB [Brucella pinnipedialis M163/99/10] gi|261316202|ref|ZP_05955399.1| tolB [Brucella pinnipedialis B2/94] gi|265987265|ref|ZP_06099822.1| protein tolB [Brucella pinnipedialis M292/94/1] gi|261295425|gb|EEX98921.1| tolB [Brucella pinnipedialis B2/94] gi|261304962|gb|EEY08459.1| translocation protein TolB [Brucella pinnipedialis M163/99/10] gi|264659462|gb|EEZ29723.1| protein tolB [Brucella pinnipedialis M292/94/1] Length = 443 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 196/447 (43%), Positives = 292/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ ++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSAIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|161619626|ref|YP_001593513.1| translocation protein TolB [Brucella canis ATCC 23365] gi|260568782|ref|ZP_05839250.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|189035979|sp|A9M7J5|TOLB_BRUC2 RecName: Full=Protein tolB; Flags: Precursor gi|161336437|gb|ABX62742.1| Tol-Pal system beta propeller repeat protein TolB [Brucella canis ATCC 23365] gi|260154166|gb|EEW89248.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 443 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 195/447 (43%), Positives = 292/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EF LWD +++IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFHLWDTFGGQRMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGVMK DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|163845276|ref|YP_001622931.1| translocation protein TolB [Brucella suis ATCC 23445] gi|189035980|sp|A9WWH3|TOLB_BRUSI RecName: Full=Protein tolB; Flags: Precursor gi|163675999|gb|ABY40109.1| Tol-Pal system beta propeller repeat protein TolB [Brucella suis ATCC 23445] Length = 443 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 195/447 (43%), Positives = 291/447 (65%), Gaps = 5/447 (1%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 I ++ + ++ A V++ N P+ IA T F+S D+L Sbjct: 1 MKIGIINTKIRTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSADQL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G ++ V++ DL+RS +F I + +F +KI+NPD+ PRF+DW + AQ LVTGR+ K+ Sbjct: 61 GSNITSVIAADLERSGLFAPIDKGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPD 120 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EF LWD +Q+IG++FF++P +WR++AH I+D IY+ +TG+KG F++R++FV Sbjct: 121 GRLKAEFHLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVD 180 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+R+++ R + PRFSPN+Q+V Y +++ +VYL Sbjct: 181 ESGPAQKRVKRLAIMDQDGANVRFISDGR-ALSLTPRFSPNRQEVTYMSFE-GGSPKVYL 238 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNT 300 + + + +GNF M +APRFS +G++ ++S +Q D + +IY++DL++ T RLT++ Sbjct: 239 LQLETGQ-RELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ASYSPD SQIVF SDR G+ QLYVM ++GS+ +RIS + SY PVWSP+GDL Sbjct: 298 QAIDTGASYSPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISM-GDGSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFTK S +F+IGV K DGS ERLL + + PTW+P+GR L+F RK G G KL++ Sbjct: 357 IAFTKQSQGQFSIGVTKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFT 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGFMD 447 IDL GRNE I TP +ASDP W ++ Sbjct: 417 IDLTGRNERQIQTPNFASDPAWSPLLE 443 >gi|13473330|ref|NP_104897.1| translocation protein TolB [Mesorhizobium loti MAFF303099] gi|32699716|sp|Q98F84|TOLB_RHILO RecName: Full=Protein tolB; Flags: Precursor gi|14024079|dbj|BAB50683.1| TolB protein precursor [Mesorhizobium loti MAFF303099] Length = 436 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 195/442 (44%), Positives = 286/442 (64%), Gaps = 7/442 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + L + + + + + P A V++ N N P+ IA T F D LG ++S Sbjct: 1 MRSFLKPLLTIAAMALGMTAVIPMPAWALVELNVNKGNVEPLPIAITDFQGGDALGAQIS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 ++V+ DL+RS +F I + +F +KI+NPD+ PRF DW + AQ LVTG V KE R+R Sbjct: 61 QIVTADLKRSGLFAPIDKSAFIEKISNPDAAPRFDDWKVINAQALVTGSVSKEADGRIRA 120 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++RLWD +Q+ G++FF++ A+ R++AH I+D IY+ +TGEKG F++R++F+ ES Sbjct: 121 QYRLWDTFAGQQMSGEQFFANDANQRRVAHIIADAIYERLTGEKGYFDTRVVFIDESGAK 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K L +MD+DGAN+RYL+ R I+ PRFSPN+Q++ Y +Y+ RVYL+ Sbjct: 181 NARKKRLAIMDQDGANVRYLSDGRS-IVLTPRFSPNRQEITYMSYESGQP-RVYLLQIET 238 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + +GNF M APRFS +G++ ++S ++ D +I+++DL+S +T RLTN+ I+ Sbjct: 239 GQ-RELVGNFPGMTFAPRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDT 297 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SYSPD S++VF SDR G+ Q+YVM ++GS Q RIS + Y PVWSP+GDLIAFTK Sbjct: 298 SPSYSPDGSKVVFTSDRGGRAQIYVMGADGSGQTRISF-GDGVYSTPVWSPRGDLIAFTK 356 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +G +F IGVMK DGS ER+L + PTW+P+GR L+F R +G G KL S+DL G Sbjct: 357 QTGGEFQIGVMKTDGSGERILSSGFQQEGPTWAPNGRVLMFFRDSNG--GPKLVSVDLTG 414 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RNE I T +ASDP W ++ Sbjct: 415 RNEQPIPTANFASDPAWSPLLE 436 >gi|304393324|ref|ZP_07375252.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp. R2A130] gi|303294331|gb|EFL88703.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp. R2A130] Length = 444 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 191/448 (42%), Positives = 278/448 (62%), Gaps = 5/448 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M + L + + + A V++ N P+ IA T F+ Sbjct: 1 MMISAMPRTSLTRLTAALISAFAMIVMATFTAQARVEIDVTRGNVEPLPIAITSFLGEGG 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 LG +++ VV+ DL+RS +F I +F + I++ ++ P FQ W ++ AQ LVTGRV+ EG Sbjct: 61 LGAEIAGVVTSDLKRSGLFAPIDPAAFIENISDTNAQPNFQSWTAIKAQALVTGRVVSEG 120 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 R R EFRLWD +Q++G ++ ++P + R++ H I+D IY+++TGEKG F++R+++V Sbjct: 121 GGRFRTEFRLWDTYGGEQLVGSQYSTNPQNARRVGHIIADAIYKALTGEKGYFDTRVVYV 180 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +ES L +MD+DG N R LT D ++ PRFSP++Q++ Y ++ RVY Sbjct: 181 AESGPKNKRVKQLAIMDQDGFNNRMLTNGSD-LVLTPRFSPSRQEITYMSF-AGGEPRVY 238 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L+ + + +GNF SM +PRFS +G+R ++S+Q+D +IYS+DL+S +T RLTNT Sbjct: 239 LLQIETGQ-REVVGNFPSMTFSPRFSPDGQRIVMSLQQDGNANIYSMDLRSRSTTRLTNT 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S S+SPD +IVFESDR G++QLYVM ++GS RIS SY PVWSP+GDL Sbjct: 298 PAIDTSPSFSPDGRRIVFESDRGGRQQLYVMGADGSSPTRISFGT-GSYSTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLY 419 IAFTK SG F IGVM+ DG ER+L E + + PTW+P+GR L+F R+ G G KLY Sbjct: 357 IAFTKRSGGNFLIGVMRPDGKGERILTEGYHNEGPTWAPNGRLLMFFRETPGAGGGPKLY 416 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 SIDL GRNE + T +ASDP W +D Sbjct: 417 SIDLTGRNEQQVPTKTFASDPAWSPLLD 444 >gi|110635500|ref|YP_675708.1| translocation protein TolB [Mesorhizobium sp. BNC1] gi|118574584|sp|Q11DI2|TOLB_MESSB RecName: Full=Protein tolB; Flags: Precursor gi|110286484|gb|ABG64543.1| TolB-like protein [Chelativorans sp. BNC1] Length = 439 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 192/442 (43%), Positives = 281/442 (63%), Gaps = 4/442 (0%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + + L++ + A V++ N PV IA T F+S G ++S Sbjct: 1 MRNFFKTAVAITSLVMGLVAMAVVPARALVEIDVNRGVVEPVPIAITDFLSAGGRGAEIS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V++ DL+RS +F I + +F +KI+NPD PRF+DW + AQ +VTGRV +E RL+ Sbjct: 61 AVIAADLKRSGLFAPIDRGAFIEKISNPDVAPRFEDWKVINAQAIVTGRVTEEPGGRLKA 120 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRLWD +Q++G++FF+ PA WR++AH I+D IY+ TGEKG F+SRI+FV ES Sbjct: 121 EFRLWDTFAGQQLVGEQFFAKPADWRRVAHIIADTIYEQFTGEKGYFDSRIVFVDESGSK 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD+DGAN R LT R I+ +P FSP +Q++ Y +++ +VYL+ Sbjct: 181 ENRVKRLAIMDQDGANYRALTDGRS-IVLKPSFSPQRQEITYVSFEGGQP-QVYLLQIET 238 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + NF +M A RF+ G + ++S ++ D +IY++DL++ T RLT+T I+ Sbjct: 239 GQRELVGNNFPTMSFASRFNPVGDKIIMSLLRTDGNSNIYTMDLKTRTTARLTDTNAIDT 298 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SYSPD +++VF SDR G+ Q+YVM ++GS+ +RIS + +Y +PVWSP+GDLIAFTK Sbjct: 299 SPSYSPDGNKVVFTSDRGGRAQIYVMNADGSNPQRISF-GDGTYSEPVWSPRGDLIAFTK 357 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 SG +F IG+M+ DGS ER+L ++ PTWSP+GR ++F R+ G G KLYSIDL G Sbjct: 358 QSGGQFQIGIMRTDGSGERILSTGFQIEGPTWSPNGRVIMFFRQDAGAAGPKLYSIDLTG 417 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RNE LI TP +ASDP W ++ Sbjct: 418 RNEQLIPTPNFASDPAWSPLLN 439 >gi|222149663|ref|YP_002550620.1| translocation protein TolB [Agrobacterium vitis S4] gi|254764836|sp|B9JRY0|TOLB_AGRVS RecName: Full=Protein tolB; Flags: Precursor gi|221736645|gb|ACM37608.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium vitis S4] Length = 435 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 207/433 (47%), Positives = 291/433 (67%), Gaps = 4/433 (0%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + + ++LV + G F T A V++ N N P+ IA F+S + +G K+S VV DL+ Sbjct: 7 LRILIVLVGMAGAFATPAMALVEININKGNVEPMPIAIPDFLSANGIGAKISAVVEADLK 66 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F ++ +F K NPD P Q+W L AQ LV GR+ +EG RLR EFRLWD Sbjct: 67 RSGLFAPVNHGAFIDKQINPDQAPNMQNWTVLNAQALVVGRITQEGDGRLRAEFRLWDTY 126 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q+ G++F++ P +WR++AH I+D IY+ ITGEKG F++RI+FV+ES K L Sbjct: 127 AGQQMSGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVFVAESGTKTDRKRQLA 186 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DG N+R LT + + ++ PRFSPN+Q+V Y +++ + RVYL+ + + +G Sbjct: 187 IMDQDGENVRMLTNTAN-LVLTPRFSPNRQEVTYMSFE-GNQPRVYLLQLETGQ-REVVG 243 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF M +PRFS +G+R ++S+Q+D +IY++DL+S T RLT+T I+ S SY+PD Sbjct: 244 NFPGMTFSPRFSPDGQRVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSPSYAPDGR 303 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVFESDR G++QLYVM S+GS Q RIS E SY PVWSP+GDLIAFTK SG KF+IG Sbjct: 304 RIVFESDRGGRQQLYVMNSDGSGQTRISF-GEGSYSTPVWSPRGDLIAFTKQSGGKFSIG 362 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VMK DGS ERLL + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Sbjct: 363 VMKPDGSGERLLTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTP 422 Query: 435 AYASDPQWVGFMD 447 ++ASDP W ++ Sbjct: 423 SFASDPAWSPLLE 435 >gi|328542544|ref|YP_004302653.1| translocation protein TolB [polymorphum gilvum SL003B-26A1] gi|326412290|gb|ADZ69353.1| translocation protein TolB [Polymorphum gilvum SL003B-26A1] Length = 449 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 184/421 (43%), Positives = 272/421 (64%), Gaps = 8/421 (1%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 A +++ P+ IA F +L +++ V++ DL+RS +F + SF Sbjct: 33 PAAALIEIDITQGQIEPMPIALPDFSPEGGDAQLARELTSVIAADLRRSGLFRPLDPASF 92 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +K + ++ PRF DW ++GAQ LVTG V ++ RLR EFRLWDV +Q++G++FF++ Sbjct: 93 IEKNLSVNTAPRFGDWRTIGAQALVTGSVTRQADGRLRAEFRLWDVFASEQMLGQQFFTT 152 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P +WR++AH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+RYLT Sbjct: 153 PENWRRLAHIIADAIYERLTGEKGYFDTRIVFVDESGPKSKRVKRLAIMDQDGANMRYLT 212 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D+++ PRFSP Q++ Y ++ D V+L++ + + +GNF M APRFS Sbjct: 213 RG-DELVLTPRFSPTSQEITYMSFGSGDP-SVFLLNIETGQ-REIVGNFPGMTFAPRFSP 269 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++S+Q+ +I+ +DL+S AT RLTNT I+ S SYSPD QIVFESDR G +Q Sbjct: 270 DGQRVIMSLQQGGNANIFVMDLRSRATTRLTNTPAIDTSPSYSPDGRQIVFESDRGGSQQ 329 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LYVM ++GS+ +RIS Y PVWSP+GDLIAFTK +F IGVM+ DG ER+L Sbjct: 330 LYVMNADGSNAQRISF-GPGRYSTPVWSPRGDLIAFTKQHQGRFMIGVMRPDGKGERILT 388 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 E + + P+W+P+GR L+F R G + G +++++DL G NE + TPA+ASDP W + Sbjct: 389 EGYHNEGPSWAPNGRVLVFFRDTPGANGGPQIWTVDLTGYNEQRVTTPAFASDPSWSPLI 448 Query: 447 D 447 D Sbjct: 449 D 449 >gi|158422148|ref|YP_001523440.1| twin-arginine translocation pathway signal precursor [Azorhizobium caulinodans ORS 571] gi|158329037|dbj|BAF86522.1| twin-arginine translocation pathway signal precursor [Azorhizobium caulinodans ORS 571] Length = 450 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 186/415 (44%), Positives = 271/415 (65%), Gaps = 4/415 (0%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 + A +K+ S P+ IA T F+ + G +S V++ DL+RS +F I +F ++ Sbjct: 38 AAQAALKLEITSGTPQPIPIAVTDFIGEGDQGRAISGVITADLKRSGLFAPIDPKAFVEQ 97 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 I+NPD PRFQDW + AQ LVTGRV ++G RL+ EFRLWDV +Q++G+++F+ P + Sbjct: 98 ISNPDLAPRFQDWRVINAQGLVTGRVTRQGDGRLKAEFRLWDVFAGQQLMGQQYFTQPEN 157 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+ YLT Sbjct: 158 WRRVAHIIADAIYERLTGEKGYFDTRIVFVDESGAKDRRVKRLAIMDQDGANVTYLTRG- 216 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D ++ PRFSP Q++ Y +Y + RV+L++ + + +GNF M APRFS +G+ Sbjct: 217 DALVLTPRFSPTSQEITYMSYAQGEP-RVFLLNIETGQ-REIVGNFPGMSFAPRFSPDGQ 274 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++S+Q+ +I+ +DL+S AT RLT+T I+ + YSPD QI FESDR G Q+YV Sbjct: 275 RVIMSLQQGGNANIFVMDLRSKATTRLTDTPAIDTAPCYSPDGRQICFESDRGGSSQIYV 334 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++GS Q+RIS A Y PVWSP+GD+IAFT+ + KFAIGVM+ DG ER+L E Sbjct: 335 MNADGSGQRRISF-GNARYNTPVWSPRGDVIAFTRQAEGKFAIGVMRPDGQGERVLTEGY 393 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + + PT++P+GR ++F R G G L++ID+ G NE + TP+Y SDP W Sbjct: 394 HNEGPTFAPNGRVIMFFRDPPGGGGPNLFTIDVTGYNEQRVPTPSYGSDPAWSPL 448 >gi|319406262|emb|CBI79899.1| TolB protein [Bartonella sp. AR 15-3] Length = 440 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 190/432 (43%), Positives = 283/432 (65%), Gaps = 5/432 (1%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 +L L+V + F +S +A +K A+++P+ IA F+S D LG K++ V++ DL+R Sbjct: 10 SLFFLIVYLWFFGFSSSYAQLKGTIAKADFNPIPIAVADFLSHDSLGIKIAAVIAADLER 69 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F + + SF + NPD P F DW + AQ L+TG+V +E RL+VEFRLWDV Sbjct: 70 SGLFFPLQKSSFPEISPNPDKQPNFSDWKKINAQGLITGKVYRETDGRLKVEFRLWDVVG 129 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++QI G++F+++ WR++AH I+D+IY +TGEKG F++RI+F+ E+ L + Sbjct: 130 KRQIKGQRFYTATERWRRVAHMIADEIYSKMTGEKGYFDTRIVFIDETGPHNARIKRLAM 189 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN+ YL+ + ++ PRFSP +Q++ Y YD VYL I + + +G Sbjct: 190 MDQDGANLIYLSEGNE-LVLTPRFSPKRQEITYMAYDKNKTPHVYLQQMEIGQ-RELLGT 247 Query: 256 FRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F +M +APRFS NG++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD + Sbjct: 248 FDNMTIAPRFSPNGQKVIMSLLQNDGSANLYTMDLRTRQMTRLTATKAIDTSASYSPDGT 307 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR GK Q+Y M +GSD +RIS + E SY P+WSP+GD IAFTK +F+IG Sbjct: 308 KIVFSSDRSGKPQIYTMNVDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTKQFQGQFSIG 366 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM DG ER+L + + PTW+P+GR L+F R+ G+ GSK+Y+ID+ GRNE L+ TP Sbjct: 367 VMHPDGKGERILTTGFHNEGPTWAPNGRVLMFFRQNPGE-GSKIYTIDITGRNERLLRTP 425 Query: 435 AYASDPQWVGFM 446 ASDP W + Sbjct: 426 NDASDPAWSPLL 437 >gi|154252569|ref|YP_001413393.1| beta-propeller repeat-containing to-pal system protein TolB [Parvibaculum lavamentivorans DS-1] gi|189035985|sp|A7HV03|TOLB_PARL1 RecName: Full=Protein tolB; Flags: Precursor gi|154156519|gb|ABS63736.1| Tol-Pal system beta propeller repeat TolB [Parvibaculum lavamentivorans DS-1] Length = 446 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 189/443 (42%), Positives = 277/443 (62%), Gaps = 8/443 (1%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG 62 R + L K+ L L++ + F A +++ N P+ IA T FV +G Sbjct: 8 RRGNAVQSLMSKLILPLVMAVA---FALPARAALQIDITQGNVDPLPIAITDFVGEGSVG 64 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 +S V+S +L+RS +F + + SF +K+++ + PRF DW + +Q LVTG+ E Sbjct: 65 ADMSAVISNNLERSGLFRPLPKASFIEKVSDINVQPRFGDWRVINSQALVTGQTRMEADG 124 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 RLRVEFRLWDV +Q+ G +FF++P +WR++AH ISD IY+ +TGE G F++RI++VSE Sbjct: 125 RLRVEFRLWDVLGEQQLTGLQFFTTPDNWRRVAHLISDAIYKRLTGEDGYFDTRIVYVSE 184 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + L +MD+DG N R LT + ++ PRFSPN Q++ Y Y + RVY++ Sbjct: 185 TGPKNARVKRLTIMDQDGHNPRMLTRGNE-LVLTPRFSPNSQEITYLAYRNNQP-RVYVL 242 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + +G F M APRFS +G+R ++S+Q+ DIY++DL+S RLTNT Sbjct: 243 DIETGQQ-EVVGEFPGMTFAPRFSPDGQRIIMSLQRGGNSDIYTMDLRSRQVVRLTNTAA 301 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ + SYSPD QI FESDR G +Q+YVM ++GS+Q+RIS + SY PVWSP+GDLIA Sbjct: 302 IDTAPSYSPDGRQITFESDRGGSQQIYVMDASGSNQRRISF-GQGSYATPVWSPRGDLIA 360 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDGDTGSKLYSI 421 FTK +G +F IGVM+ DG+ ER+L + + + PTW+P+GR L+F R + G L+S+ Sbjct: 361 FTKITGGRFVIGVMRPDGTGERVLTDGFHNEGPTWAPNGRVLMFFRETRGAQGGPSLWSV 420 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 D+ G NE TP +ASDP W Sbjct: 421 DVTGYNERPSPTPTFASDPAWSP 443 >gi|90426222|ref|YP_534592.1| translocation protein TolB [Rhodopseudomonas palustris BisB18] gi|90108236|gb|ABD90273.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 450 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 191/450 (42%), Positives = 283/450 (62%), Gaps = 8/450 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS--- 57 MS R + L P A ++ N +P+ IA FV+ Sbjct: 4 MSSRLPALPLSRRQALLGGAGSAAALLLPGGAQAQTRLQITEGNVAPMPIAIPNFVAGTP 63 Query: 58 -IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 +E+G V++V++ +L+RS +F I Q +F ++I+N D+ P+FQ W ++ AQ LVTGR+ Sbjct: 64 ADNEVGLGVAQVITNNLKRSGLFAPIDQAAFIERISNIDTPPQFQSWKTINAQALVTGRM 123 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 K+G RL+ EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR Sbjct: 124 TKQGDGRLKAEFRLWDVAAGQQLTGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSR 183 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ++F+ E+ L +MD+DGAN+RYLT D ++ PRFSP+ Q++ Y + D Sbjct: 184 VVFIDETGSKERRVKRLALMDQDGANVRYLTRGAD-LVLTPRFSPSTQEITYMEFGQGDP 242 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 RVYL + + + +GNF M +PRFS +G+R ++S+Q+ +++ +DL+S +T R Sbjct: 243 -RVYLFNIETGQ-REIVGNFPGMSFSPRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTTR 300 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT+T I+ S SY+PD S+I FESDR GK Q+YVM + G +RIS E SY PVWSP Sbjct: 301 LTDTPAIDTSPSYAPDGSKICFESDRGGKPQIYVMPAGGGGAQRISF-GEGSYSTPVWSP 359 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 +GD IAFTK G +F+IG+MK DGS ERLL + + PT++P+GR L+F R G+ G Sbjct: 360 RGDYIAFTKQGGGQFSIGIMKPDGSGERLLTSGYHNEGPTFAPNGRVLMFFRDPGGNGGP 419 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 L+++D++GRNE + TP +ASDP W + Sbjct: 420 SLFTVDISGRNEQKVPTPGFASDPAWSPLL 449 >gi|118574595|sp|Q20X63|TOLB_RHOPB RecName: Full=Protein tolB; Flags: Precursor Length = 447 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 191/450 (42%), Positives = 283/450 (62%), Gaps = 8/450 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS--- 57 MS R + L P A ++ N +P+ IA FV+ Sbjct: 1 MSSRLPALPLSRRQALLGGAGSAAALLLPGGAQAQTRLQITEGNVAPMPIAIPNFVAGTP 60 Query: 58 -IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 +E+G V++V++ +L+RS +F I Q +F ++I+N D+ P+FQ W ++ AQ LVTGR+ Sbjct: 61 ADNEVGLGVAQVITNNLKRSGLFAPIDQAAFIERISNIDTPPQFQSWKTINAQALVTGRM 120 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 K+G RL+ EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR Sbjct: 121 TKQGDGRLKAEFRLWDVAAGQQLTGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSR 180 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ++F+ E+ L +MD+DGAN+RYLT D ++ PRFSP+ Q++ Y + D Sbjct: 181 VVFIDETGSKERRVKRLALMDQDGANVRYLTRGAD-LVLTPRFSPSTQEITYMEFGQGDP 239 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 RVYL + + + +GNF M +PRFS +G+R ++S+Q+ +++ +DL+S +T R Sbjct: 240 -RVYLFNIETGQ-REIVGNFPGMSFSPRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTTR 297 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT+T I+ S SY+PD S+I FESDR GK Q+YVM + G +RIS E SY PVWSP Sbjct: 298 LTDTPAIDTSPSYAPDGSKICFESDRGGKPQIYVMPAGGGGAQRISF-GEGSYSTPVWSP 356 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 +GD IAFTK G +F+IG+MK DGS ERLL + + PT++P+GR L+F R G+ G Sbjct: 357 RGDYIAFTKQGGGQFSIGIMKPDGSGERLLTSGYHNEGPTFAPNGRVLMFFRDPGGNGGP 416 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 L+++D++GRNE + TP +ASDP W + Sbjct: 417 SLFTVDISGRNEQKVPTPGFASDPAWSPLL 446 >gi|86359053|ref|YP_470945.1| translocation protein TolB [Rhizobium etli CFN 42] gi|119371054|sp|Q2K4L8|TOLB_RHIEC RecName: Full=Protein tolB; Flags: Precursor gi|86283155|gb|ABC92218.1| protein transporter protein [Rhizobium etli CFN 42] Length = 436 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 206/440 (46%), Positives = 300/440 (68%), Gaps = 10/440 (2%) Query: 13 MKINLCLLLVLIGGF-----FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +K +L L+++ G F T +A V++ N N P+ IA T F+ ++G +VS+ Sbjct: 2 VKCSLIRALMVVAGLVGAAAFTTPANALVELNINKGNIQPLPIAVTDFL-QGDMGAQVSQ 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR E Sbjct: 61 VIAADLQRSGLFAPINKTAFIEKISNPDAAPRFEDWKVINAQALVTGRVTQEADGRLRAE 120 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 121 FRLWDTFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQ 180 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L +MD+DG N+R LT D ++ PRFSP++Q+V Y ++ ++ RVYL+ Sbjct: 181 QRKRQLAIMDQDGFNVRTLTDGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLETG 238 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S Sbjct: 239 Q-REVVGNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSP 297 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK S Sbjct: 298 SYSPDGARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQS 356 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G N Sbjct: 357 GGKFSIGVMKPDGSGERILTSGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGYN 416 Query: 428 ETLINTPAYASDPQWVGFMD 447 E L+ TP+YASDP W ++ Sbjct: 417 EQLVKTPSYASDPAWSPLLE 436 >gi|319781027|ref|YP_004140503.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166915|gb|ADV10453.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 436 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 194/418 (46%), Positives = 277/418 (66%), Gaps = 7/418 (1%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 A V++ N N P+ IA T F D LG ++S++V+ DL+RS +F I + +F +K Sbjct: 25 PALALVELNVNKGNVEPLPIAITDFQGGDALGAQISQIVTADLKRSGLFAPIDKSAFIEK 84 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 ITNPD+ PRF DW + AQ LVTG V KE R+R ++RLWD +Q+ G++FF++ A+ Sbjct: 85 ITNPDAAPRFDDWKVINAQALVTGSVSKEADGRIRAQYRLWDTFAGQQMAGEQFFANDAN 144 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R++AH I+D IY+ +TGEKG F++R++F+ ES K L +MD+DGAN+RYL+ R Sbjct: 145 QRRVAHIIADAIYERLTGEKGYFDTRVVFIDESGAKNARKKRLAIMDQDGANVRYLSDGR 204 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 I+ PRFSPN+Q++ Y +Y+ RVYL+ + + +GNF M APRFS +G+ Sbjct: 205 S-IVLTPRFSPNRQEITYMSYESGQP-RVYLLQIETGQ-RELVGNFPGMTFAPRFSPDGQ 261 Query: 271 RALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + ++S ++ D +I+++DL+S +T RLTN+ I+ S SYSPD S++VF SDR G+ Q+Y Sbjct: 262 KVIMSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIY 321 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM ++GS Q RIS + Y PVWSP+GDLIAFTK +G +F IGVMK DGS ER+L Sbjct: 322 VMGADGSGQTRISF-GDGVYSTPVWSPRGDLIAFTKQTGGEFQIGVMKTDGSGERILSSG 380 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + PTW+P+GR L+F R G G KL S+DL GRNE I T +ASDP W ++ Sbjct: 381 FQQEGPTWAPNGRVLMFFRDSAG--GPKLVSVDLTGRNEQSIPTANFASDPAWSPLLE 436 >gi|260467065|ref|ZP_05813245.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium opportunistum WSM2075] gi|259029174|gb|EEW30470.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium opportunistum WSM2075] Length = 436 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 192/421 (45%), Positives = 278/421 (66%), Gaps = 7/421 (1%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 A V++ N N P+ IA T F D LG ++S++++ DL+RS +F I + +F Sbjct: 22 STLPALALVELNVNKGNVEPLPIAITDFQGGDALGAQISQIITADLKRSGLFAPIDKSAF 81 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KI+NPD+ PRF DW + AQ LVTG V KE R+R ++RLWD +Q+ G++FF++ Sbjct: 82 IEKISNPDAAPRFDDWKVINAQALVTGSVSKEADGRIRAQYRLWDTFAGQQMSGEQFFAN 141 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 A+ R++AH I+D IY+ +TGEKG F++R++F+ ES K L +MD+DGAN+RYL+ Sbjct: 142 DANQRRVAHIIADAIYERLTGEKGYFDTRVVFIDESGAKNARKKRLAIMDQDGANVRYLS 201 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 R I+ PRFSPN+Q++ Y +Y+ RVYL+ + + +GNF M APRFS Sbjct: 202 DGRS-IVLTPRFSPNRQEITYMSYESGQP-RVYLLQIETGQ-RELVGNFPGMTFAPRFSP 258 Query: 268 NGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G++ ++S ++ D +I+++DL+S +T RLTN+ I+ S SYSPD S++VF SDR G+ Sbjct: 259 DGQKVIMSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRA 318 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+YVM ++GS Q RIS + Y PVWSP+GDLIAFTK +G +F IGVMK DGS ER+L Sbjct: 319 QIYVMGADGSGQTRISF-GDGVYSTPVWSPRGDLIAFTKQTGGEFQIGVMKTDGSGERIL 377 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + PTW+P+GR L+F R +G G KL S+DL GRNE I T +ASDP W + Sbjct: 378 SSGFQQEGPTWAPNGRVLMFFRDANG--GPKLISVDLTGRNEQPIPTSNFASDPAWSPLL 435 Query: 447 D 447 + Sbjct: 436 E 436 >gi|319899382|ref|YP_004159479.1| TolB protein [Bartonella clarridgeiae 73] gi|319403350|emb|CBI76909.1| TolB protein [Bartonella clarridgeiae 73] Length = 440 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 187/433 (43%), Positives = 280/433 (64%), Gaps = 7/433 (1%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 ++ + GF +S +A +K +A+++P+ IA FVS D LG K++ VV+ DL+R Sbjct: 12 FFFIVYLWFCGF--SSAYAQLKGTIANADFNPIPIAIADFVSHDSLGVKIAAVVAADLER 69 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F + + SF + NPD P F DW + Q LVTG+V +E RL+V+FRLWDV Sbjct: 70 SGLFLPLQKSSFPEISPNPDKQPNFSDWKKINTQGLVTGKVYREADGRLKVDFRLWDVLG 129 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 +QI G++F+++ WR++AH ISD+IY +TGEKG F++RI+F+ E+ L + Sbjct: 130 NRQIKGQRFYTATERWRRVAHMISDEIYSKMTGEKGYFDTRIVFIDETGPHDARIKRLTI 189 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN+ YL+ + ++ PRFSP +Q++ Y Y VYL + + + IG Sbjct: 190 MDQDGANLTYLSDGSE-LVLTPRFSPKRQEITYMAYGKNKTPHVYLQQMEVGQ-RELIGT 247 Query: 256 FRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F +M +APRFS +G++ ++S +Q + + ++Y++DL++ RLT T I+ SASYSPD + Sbjct: 248 FDNMTIAPRFSPDGQKVIMSLLQNNGSANLYTMDLRTRKMTRLTTTKAIDTSASYSPDGN 307 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR+GK Q+Y M +GSD +RIS + E SY P+WSP+GD IAFTK +F+IG Sbjct: 308 KIVFSSDRDGKPQIYTMNVDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTKQFQGQFSIG 366 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM DG ER+L + + PTW+P+GR L+F RK G G+K+Y+ID+ GRNE L+ TP Sbjct: 367 VMYPDGKGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-AGAKIYTIDITGRNERLLPTP 425 Query: 435 AYASDPQWVGFMD 447 ASDP W ++ Sbjct: 426 NDASDPAWSPLLN 438 >gi|307944545|ref|ZP_07659885.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp. TrichSKD4] gi|307772294|gb|EFO31515.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp. TrichSKD4] Length = 449 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 189/436 (43%), Positives = 270/436 (61%), Gaps = 10/436 (2%) Query: 18 CLLLVLIGGFFPT--SIHAFVKVATNSANYSPVSIAFTKFVSIDE---LGGKVSEVVSKD 72 CL+LV G A +++ N P+ IA F + L + V++ D Sbjct: 18 CLMLVAFAGLLTALGPARALIELDITQGNIEPLPIALPDFAAAGSDPKLASDMIGVITAD 77 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+RS +F + SF QK + ++ PRF DW ++GAQ LV+G V K+ RLR EFRLWD Sbjct: 78 LKRSGLFKPLDPASFIQKNMDVNTTPRFGDWRTIGAQALVSGTVSKQADGRLRAEFRLWD 137 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V +Q++G++FF++ +WR++AH I+D IY+ +TGEKG F++RI+++ E+ Sbjct: 138 VFASEQMLGQQFFTTEENWRRLAHIIADAIYERLTGEKGYFDTRIVYIDETGPKDKRVKR 197 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD+DGAN+RYLT D ++ PRFSP Q++ Y +Y D VYL++ + + Sbjct: 198 LAIMDQDGANVRYLTKG-DDLVLTPRFSPTSQEITYMSYSGADP-SVYLLNIETGQ-REI 254 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 +GNF M APRFS +G+ ++S+Q+ +I+ +DL+S T RLTNT I+ S SYSPD Sbjct: 255 VGNFPGMTFAPRFSPDGQSVVMSLQQGGNANIFKMDLRSRRTTRLTNTAAIDTSPSYSPD 314 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S+IVFESDR G +QLYVM N + RIS Y PVWSP+GDLIAFTK +F Sbjct: 315 GSRIVFESDRGGTQQLYVMSGNDGNPLRISF-GPGRYSTPVWSPRGDLIAFTKMHQGRFM 373 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLI 431 IGVMK DG ER+L E + + P WSP+GR L+F R G + G +++++DL G NE + Sbjct: 374 IGVMKPDGKGERILTEGYHNEGPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRV 433 Query: 432 NTPAYASDPQWVGFMD 447 NTPA+ASDP W +D Sbjct: 434 NTPAFASDPSWSPLID 449 >gi|190893275|ref|YP_001979817.1| protein transporter uptake component protein [Rhizobium etli CIAT 652] gi|226705888|sp|B3PYX5|TOLB_RHIE6 RecName: Full=Protein tolB; Flags: Precursor gi|190698554|gb|ACE92639.1| protein transporter, uptake component protein [Rhizobium etli CIAT 652] Length = 436 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 200/441 (45%), Positives = 294/441 (66%), Gaps = 5/441 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + + L + ++ T +A V + N P+ IA T F+ ++G +VS Sbjct: 1 MMKCSFFRAILVAVGLMAAAVVATPANALVTLDIRKGNVQPMPIAITDFL-QGDMGAQVS 59 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR Sbjct: 60 QVIAADLQRSGLFAPINKSAFIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRA 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 120 EFRLWDPFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTK 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K L +MD+DG N+R LT D ++ PRFSPN+Q+V Y ++ ++ RVYL+ Sbjct: 180 QQRKRQLAIMDQDGFNVRMLTDGSD-LVLTPRFSPNRQEVTYMSFANQQP-RVYLLQLET 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S Sbjct: 238 GQ-REVVGNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTS 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK Sbjct: 297 PSYSPDGARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQ 355 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G Sbjct: 356 AGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGY 415 Query: 427 NETLINTPAYASDPQWVGFMD 447 NE L+ TP+Y SDP W ++ Sbjct: 416 NEQLVKTPSYGSDPAWSPLLE 436 >gi|218510315|ref|ZP_03508193.1| translocation protein TolB [Rhizobium etli Brasil 5] Length = 436 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 200/441 (45%), Positives = 294/441 (66%), Gaps = 5/441 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + + L + ++ T +A V + N P+ IA T F+ ++G +VS Sbjct: 1 MMKCSFFRAILVAVGLMAAAVVATPANALVTLDIRKGNVQPMPIAVTDFL-QGDMGAQVS 59 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR Sbjct: 60 QVIAADLQRSGLFAPINKSAFIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRA 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 120 EFRLWDPFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTK 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K L +MD+DG N+R LT D ++ PRFSPN+Q+V Y ++ ++ RVYL+ Sbjct: 180 QQRKRQLAIMDQDGFNVRMLTDGSD-LVLTPRFSPNRQEVTYMSFANQQP-RVYLLQLET 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S Sbjct: 238 GQ-REVVGNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTS 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK Sbjct: 297 PSYSPDGARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQ 355 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G Sbjct: 356 AGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGY 415 Query: 427 NETLINTPAYASDPQWVGFMD 447 NE L+ TP+Y SDP W ++ Sbjct: 416 NEQLVKTPSYGSDPAWSPLLE 436 >gi|327193466|gb|EGE60362.1| translocation protein TolB [Rhizobium etli CNPAF512] Length = 443 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 206/448 (45%), Positives = 299/448 (66%), Gaps = 6/448 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGF-FPTSIHAFVKVATNSANYSPVSIAFTKFVSID 59 M F + ++ L ++ LIG F T +A V + N P+ IA T F+ Sbjct: 1 MLKGLFDMVKCSLIRALMVIAGLIGAAAFTTPANALVTLDLRKGNVQPMPIAVTDFL-QG 59 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 ++G +VS+V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV +E Sbjct: 60 DMGAQVSQVIAADLQRSGLFAPINKSAFIEKISNPDASPRFEDWKVINAQALVTGRVTQE 119 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 RLR EFRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++F Sbjct: 120 ADGRLRAEFRLWDPFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVF 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VSES K L +MD+DG N+R LT D ++ PRFSPN+Q+V Y ++ ++ RV Sbjct: 180 VSESGTKQQRKRQLAIMDQDGFNVRMLTDGSD-LVLTPRFSPNRQEVTYMSFANQQP-RV 237 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL+ + + +GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+ Sbjct: 238 YLLQLETGQ-REVVGNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTS 296 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 T I+ S SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GD Sbjct: 297 TAAIDTSPSYSPDGARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGD 355 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 LIAFTK +G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LY Sbjct: 356 LIAFTKQAGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLY 415 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 SIDL G NE L+ TP+Y SDP W ++ Sbjct: 416 SIDLTGYNEQLVKTPSYGSDPAWSPLLE 443 >gi|85714380|ref|ZP_01045368.1| TolB [Nitrobacter sp. Nb-311A] gi|85698827|gb|EAQ36696.1| TolB [Nitrobacter sp. Nb-311A] Length = 441 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 190/444 (42%), Positives = 280/444 (63%), Gaps = 8/444 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELG 62 + LN + + +V N +P+ IA FV +E+G Sbjct: 1 MPFRLNRRHMFFGMASAAVLLRGRQALGQARVQITEGNVAPLPIAIPNFVGGSASDNEVG 60 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 V++V++ +L+RS +F I Q ++ +KITN D P+F +W ++ AQ LVTGR+ ++G Sbjct: 61 AGVAKVITNNLKRSGLFAPIDQAAYIEKITNIDVPPQFANWKTINAQALVTGRMTRQGDG 120 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 RL+ EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV E Sbjct: 121 RLKAEFRLWDVATGQQLAGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFVDE 180 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S S L +MD+DGAN+RYLT D ++ PRFSP+ Q++ Y + D RVYL Sbjct: 181 SGPSQHRVKRLALMDQDGANVRYLTRGAD-LVITPRFSPSTQEITYMEFGQGDP-RVYLF 238 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + +GNF M APRF+ +G+R ++S+Q+ +++ +DL+S +T RLT+T Sbjct: 239 NIETGQ-REIVGNFPGMSFAPRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTTRLTDTPA 297 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ S SYSPD ++I FESDR GK Q+YVM ++G +RIS E SY PVWSP+GD IA Sbjct: 298 IDTSPSYSPDGARICFESDRGGKPQIYVMGASGGGAQRISF-GEGSYSTPVWSPRGDYIA 356 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 FTK G +F+IG++K DGS ER+L + + PT++P+GR L+F R G G LY+ID Sbjct: 357 FTKQGGGQFSIGIIKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGAGGPSLYTID 416 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 ++GRNE + TP +ASDP W + Sbjct: 417 VSGRNELKVPTPGFASDPAWSPLL 440 >gi|254501514|ref|ZP_05113665.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia alexandrii DFL-11] gi|222437585|gb|EEE44264.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia alexandrii DFL-11] Length = 449 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 189/453 (41%), Positives = 278/453 (61%), Gaps = 12/453 (2%) Query: 3 LRFFIAEELNMKINLCL----LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--- 55 +R + L + + + L P + A V++ N P+ IA +F Sbjct: 1 MRQIWKQFLGIVGSSARVRGGFVFLFAALTPLPVAALVEIDITQGNVEPLPIALPQFSAE 60 Query: 56 VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 +L ++ V++ DL+RS +FN + SF QK + +S PRF DW ++ AQ LVTG Sbjct: 61 GGDSKLAADMTAVIAADLKRSGLFNPLDPASFIQKNMSVNSTPRFGDWRTISAQALVTGT 120 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V K+ RLR EFRLWDV +Q++G++F+++P +WR++AH I+D +Y+ ITGEKG F++ Sbjct: 121 VTKQADGRLRAEFRLWDVFAAEQMLGQQFYTTPENWRRLAHIIADAVYERITGEKGYFDT 180 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI+FV E+ L +MD+DGAN+RYLT D ++ PRFSP Q++ Y +Y D Sbjct: 181 RIVFVDETGPKDKRVKRLALMDQDGANVRYLTRG-DDLVLTPRFSPTSQEITYMSYAGAD 239 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 VYL++ + + +GNF M APRFS +G+ ++S+Q+ +I+ +DL+S T Sbjct: 240 P-SVYLLNIETGQ-REIVGNFPGMTFAPRFSPDGQSVVMSLQQGSNANIFKMDLRSRQTT 297 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLTN+ I+ S S+SPDS +IVFESDR G +QLYVM ++G +RIS Y PVWS Sbjct: 298 RLTNSAAIDTSPSFSPDSQRIVFESDRGGSQQLYVMSASGGQAQRISF-GPGRYSTPVWS 356 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DT 414 P+GDLIAFTK +F IGVM+ DG ER+L E + + P WSP+GR L+F R G + Sbjct: 357 PRGDLIAFTKQHQGRFMIGVMRPDGKGERVLTEGYHNEGPAWSPNGRVLVFFRDTPGANG 416 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 G +++++DL G NE + TPA+ASDP W +D Sbjct: 417 GPQVWTVDLTGYNEQRLETPAFASDPSWSPLID 449 >gi|222086973|ref|YP_002545507.1| Tol-Pal system beta propeller repeat protein TolB [Agrobacterium radiobacter K84] gi|221724421|gb|ACM27577.1| Tol-Pal system beta propeller repeat protein TolB [Agrobacterium radiobacter K84] Length = 441 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 205/420 (48%), Positives = 294/420 (70%), Gaps = 5/420 (1%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 + + +A V++ N N P+ IA T +S D LG ++S V++ DLQRS +F I++ +F Sbjct: 27 YASPAYAVVEININKGNVQPMPIAITDLLSNDGLGAQISGVIAADLQRSGLFAPINKQAF 86 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KI+NPDS PRF DW S+ AQ LVTGRV ++G RLR EFRLWD Q+IG++F++ Sbjct: 87 IEKISNPDSTPRFPDWTSINAQALVTGRVTQDG-GRLRAEFRLWDTFGNSQMIGQQFYAQ 145 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P +WR++AH I+D IY+ ITGEKG F++R++FV+ES K L +MD+DGAN+R LT Sbjct: 146 PDNWRRVAHIIADAIYEKITGEKGYFDTRVVFVAESGPKTARKTQLAIMDQDGANVRMLT 205 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D ++ PRFSP++Q+V Y ++ ++ RVYL+ + + + +GNF M +PRFS Sbjct: 206 NGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLQTGQ-REIVGNFPGMTFSPRFSP 262 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +Q+ FESDR GK+Q Sbjct: 263 DGQRVIMSLQQEGNANIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGTQVAFESDRGGKQQ 322 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +YVM ++GS+Q+RIS + SY PVWSP+GDLIAFTK SG F+IGVMK DGS ERLL Sbjct: 323 IYVMNADGSNQRRISF-GDGSYSTPVWSPRGDLIAFTKQSGGSFSIGVMKTDGSGERLLT 381 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+GR ++F R+ G +G +LYSIDL G NE I TP +ASDP W ++ Sbjct: 382 TGFHNEGPTWAPNGRVIMFFREPAGSSGPQLYSIDLTGYNEQKIPTPGFASDPAWSPLLE 441 >gi|75676901|ref|YP_319322.1| translocation protein TolB [Nitrobacter winogradskyi Nb-255] gi|118574589|sp|Q3SP21|TOLB_NITWN RecName: Full=Protein tolB; Flags: Precursor gi|74421771|gb|ABA05970.1| TolB [Nitrobacter winogradskyi Nb-255] Length = 450 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 190/445 (42%), Positives = 280/445 (62%), Gaps = 8/445 (1%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDEL 61 + LN + + + +V N +P+ IA FV +E+ Sbjct: 9 RMPFRLNRRHMISGMASAAVLLGSRQALGQARVQITEGNVAPLPIAIPNFVGGTPSDNEV 68 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G V++V++ +L+RS +F I Q ++ +KITN D P+F +W ++ AQ LVTGR+ ++G Sbjct: 69 GAGVAKVITNNLKRSGLFAPIDQAAYIEKITNIDVPPQFANWKTINAQALVTGRMTRQGD 128 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV Sbjct: 129 GRLKAEFRLWDVATGQQLAGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFVD 188 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES S L +MD+DGAN+RYLT D ++ PRFSP+ Q+V Y + D RVYL Sbjct: 189 ESGSSQRRVKRLALMDQDGANVRYLTRGAD-LVITPRFSPSTQEVTYMEFGQGDP-RVYL 246 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + + +GNF M +PRF+ +G+R ++S+Q+ +++ +DL+S +T RLT+T Sbjct: 247 FNIETGQ-REIVGNFPGMSFSPRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTTRLTDTP 305 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ S SYSPD ++I FESDR GK Q+YVM + G +RIS E SY PVWSP+GD I Sbjct: 306 AIDTSPSYSPDGARICFESDRGGKPQIYVMGATGGGAQRISF-GEGSYSTPVWSPRGDYI 364 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 AFTK G +F+IG++K DGS ER+L + + PT++P+GR L+F R G G LY+I Sbjct: 365 AFTKQGGGQFSIGIIKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGGGGPSLYTI 424 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D++GRNE + TP +ASDP W + Sbjct: 425 DVSGRNELKVPTPGFASDPAWSPLL 449 >gi|319407739|emb|CBI81386.1| TolB protein [Bartonella sp. 1-1C] Length = 440 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 188/442 (42%), Positives = 286/442 (64%), Gaps = 7/442 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + + + + + GF +S +A +K A+++P+ IA FVS D LG K++ Sbjct: 3 VIKRIISSLFFFSVYLWFSGF--SSSYAQLKGTIAKADFNPIPIAVADFVSHDSLGIKIA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV+ DL+RS +F + + SF + NPD P F DW + AQ LVTG++ +E RL+V Sbjct: 61 AVVAADLERSGLFFPLQKSSFPETTPNPDQQPNFPDWKKINAQGLVTGKIYRETDGRLKV 120 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +FRLWDV ++QI G++F+++ WR++AH I+D+IY +TGEKG F++RI+F+ E+ Sbjct: 121 DFRLWDVAGKRQIKGQRFYTATERWRRVAHMIADEIYSQMTGEKGYFDTRIVFIDETGPQ 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD+DGAN+ YL+ + ++ PRFSP +Q++ Y Y VYL + Sbjct: 181 NARIKRLAIMDQDGANLIYLSDGSE-LVLTPRFSPKRQEITYMAYGKNKTPHVYLQQMEV 239 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + IG+F +M +APRFS NG++ ++S +Q D + ++Y++DL++ RLT T I+ Sbjct: 240 GQ-RELIGSFDNMTIAPRFSPNGQKVIMSLLQNDGSANLYTMDLRTRKMTRLTATQAIDT 298 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SASYSPD ++IVF SDR GK+Q+Y M +GSD +RIS + E SY P+WSP+GD IAFTK Sbjct: 299 SASYSPDGTKIVFASDRNGKQQIYTMNIDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTK 357 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +F+IGVM DG ER+L + + PTW+P+GR L+F R+ G+ GSK+Y+ID+ G Sbjct: 358 QFQGQFSIGVMHPDGKGERILTTGFHNEGPTWAPNGRVLMFFRQNPGE-GSKIYTIDITG 416 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RNE L+ TP ASDP W ++ Sbjct: 417 RNERLLPTPNDASDPAWSPLLN 438 >gi|91978608|ref|YP_571267.1| translocation protein TolB [Rhodopseudomonas palustris BisB5] gi|91685064|gb|ABE41366.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB5] Length = 449 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 189/419 (45%), Positives = 276/419 (65%), Gaps = 8/419 (1%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 +V N +P+ IA FV S +E+GG VS+V++ +L+RS +F I Q ++ Sbjct: 34 AFGQARVQITEGNVAPLPIAIPNFVAGTPSDNEVGGGVSQVITNNLKRSGLFAPIDQAAY 93 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KITN D P+F+ W S+ AQ LVTGR+ ++ RL+ EFRLWDV +Q+ G+++F+S Sbjct: 94 LEKITNIDVPPQFKSWTSINAQALVTGRMTRQPDGRLKAEFRLWDVATGQQLAGQQYFTS 153 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P WR+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT Sbjct: 154 PEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPADRRVKRLALMDQDGANVRYLT 213 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D ++ PRFSP+ Q++ Y + D +VYL + + + +GNF M APRFS Sbjct: 214 RGSD-LVLTPRFSPSTQEITYMEFGQGDP-KVYLFNIETGQ-REIVGNFPGMSFAPRFSP 270 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++S+Q+ +++ +DL+S T RLT+T I+ S SYSPD+++I FESDR GK Q Sbjct: 271 DGQRIIMSLQQGGNSNLFVMDLRSKTTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQ 330 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y+M + G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L Sbjct: 331 IYIMPAGGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILT 389 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PT++P+GR L+F R G+ G LY++D++GRNE + TP YASDP W + Sbjct: 390 SGFHNEGPTFAPNGRVLMFFRDPGGNAGPSLYTVDVSGRNELRVPTPGYASDPAWSPLL 448 >gi|241206184|ref|YP_002977280.1| translocation protein TolB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860074|gb|ACS57741.1| Tol-Pal system beta propeller repeat protein TolB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 435 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 203/434 (46%), Positives = 291/434 (67%), Gaps = 6/434 (1%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 + L + ++ F T +A V + N P+ IA T F ++G +VS+V++ DL Sbjct: 8 RAILVAVGLMTAAVFATPANALVTLDIRKGNVQPMPIAVTDFQG--DMGAQVSQVIAADL 65 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 QRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR EFRLWD Sbjct: 66 QRSGLFAPINKTAFIEKISNPDASPRFEDWKVINAQALVTGRVTKEADGRLRAEFRLWDP 125 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L Sbjct: 126 FAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQL 185 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD+DG N+R LT D ++ PRFSP++Q+V Y ++ ++ RVYL+ + + + Sbjct: 186 AIMDQDGFNVRMLTDGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLETGQ-REVV 242 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 GNF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLT+T I+ S SYSPD Sbjct: 243 GNFPGMTFSPRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDG 302 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK +G KF+I Sbjct: 303 ARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQAGGKFSI 361 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 GVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ T Sbjct: 362 GVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKT 421 Query: 434 PAYASDPQWVGFMD 447 P Y SDP W M+ Sbjct: 422 PTYGSDPAWSPLME 435 >gi|319404775|emb|CBI78376.1| TolB protein [Bartonella rochalimae ATCC BAA-1498] Length = 440 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 188/442 (42%), Positives = 284/442 (64%), Gaps = 7/442 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + + + + + GF +S +A +K A+++P+ IA FVS D LG K++ Sbjct: 3 VIKRIISSLFFFSVYLWFSGF--SSSYAQLKGTIAKADFNPIPIAVADFVSHDSLGIKIA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV+ DL+RS +F + + SF + NPD P F DW + AQ LVTG++ +E RL+V Sbjct: 61 AVVAADLERSGLFFPLQKSSFPEITPNPDQQPNFPDWKKINAQGLVTGKIYRETDGRLKV 120 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +FRLWDV ++QI G++F+++ WR++AH I+D+IY +TGEKG F++RI+F+ E+ Sbjct: 121 DFRLWDVAGKRQIKGQRFYTATERWRRVAHMIADEIYSQMTGEKGYFDTRIVFIDETGPQ 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD+DGAN+ YL+ + I PRFSP +Q++ Y Y VYL + Sbjct: 181 NARIKRLAIMDQDGANLIYLSDGSELI-LTPRFSPKRQEITYMAYGKNKTPHVYLQQMEV 239 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + IG+F +M +APRFS NG++ ++S +Q + + ++Y++DL++ RLT T I+ Sbjct: 240 GQ-RELIGSFDNMTIAPRFSPNGQKVIMSLLQNNGSANLYTMDLRTRKMTRLTATQAIDT 298 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SASYSPD ++IVF SDR GK Q+Y M +GSD +RIS + E SY P+WSP+GD IAFTK Sbjct: 299 SASYSPDGTKIVFSSDRNGKPQIYTMNVDGSDLQRISSN-EGSYSTPIWSPRGDYIAFTK 357 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +F+IGVM DG ER+L + + PTW+P+GR L+F R+ G+ GSK+Y+ID+ G Sbjct: 358 QFQGQFSIGVMHPDGKGERILTTGFHNEGPTWAPNGRVLMFFRQNPGE-GSKIYTIDITG 416 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RNE L+ TP ASDP W ++ Sbjct: 417 RNERLLPTPNDASDPAWSPLLN 438 >gi|116253709|ref|YP_769547.1| translocation protein TolB [Rhizobium leguminosarum bv. viciae 3841] gi|119371055|sp|Q1MC72|TOLB_RHIL3 RecName: Full=Protein tolB; Flags: Precursor gi|115258357|emb|CAK09459.1| putative TolB family protein uptake component [Rhizobium leguminosarum bv. viciae 3841] Length = 435 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 203/434 (46%), Positives = 291/434 (67%), Gaps = 6/434 (1%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 + L + ++ F T +A V + N P+ IA T F ++G +VS+V++ DL Sbjct: 8 RAILVAVGLMTAAVFATPANALVTLDIRKGNVQPMPIAVTDFQG--DIGAQVSQVIAADL 65 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 QRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR EFRLWD Sbjct: 66 QRSGLFAPINKTAFIEKISNPDAAPRFEDWKVINAQALVTGRVSKEADGRLRAEFRLWDP 125 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L Sbjct: 126 FAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQL 185 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD+DG N+R LT D ++ PRFSP++Q+V Y ++ ++ RVYL+ + + + Sbjct: 186 AIMDQDGFNVRMLTDGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLETGQ-REVV 242 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 GNF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLT+T I+ S SYSPD Sbjct: 243 GNFPGMTFSPRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDG 302 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK +G KF+I Sbjct: 303 ARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQAGGKFSI 361 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 GVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ T Sbjct: 362 GVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKT 421 Query: 434 PAYASDPQWVGFMD 447 P Y SDP W M+ Sbjct: 422 PTYGSDPAWSPLME 435 >gi|209550776|ref|YP_002282693.1| translocation protein TolB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226705889|sp|B5ZNL9|TOLB_RHILW RecName: Full=Protein tolB; Flags: Precursor gi|209536532|gb|ACI56467.1| Tol-Pal system beta propeller repeat protein TolB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 435 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 207/441 (46%), Positives = 296/441 (67%), Gaps = 7/441 (1%) Query: 8 AEELNMKINLCLLLVLIGGF-FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + ++ L ++ LIG F T +A V + N P+ IA T F +LG +VS Sbjct: 1 MVKCSLIRALMVIAGLIGAAAFTTPANALVTLDLRKGNVQPMPIAVTDFQG--DLGAQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V++ DLQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR Sbjct: 59 QVIAADLQRSGLFAPINKTAFIEKISNPDAAPRFEDWKVINAQALVTGRVTKEADGRLRA 118 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRLWD +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES Sbjct: 119 EFRLWDPFAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTK 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K L +MD+DG N+R LT D ++ PRFSP++Q+V Y ++ ++ RVYL+ Sbjct: 179 QQRKRQLAIMDQDGFNVRMLTDGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLET 236 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +GNF M +PRFS +G++ ++S+Q+D +IY++DL+S T RLT+T I+ S Sbjct: 237 GQ-REVVGNFPGMTFSPRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAAIDTS 295 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SYSPD +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK Sbjct: 296 PSYSPDGARVSFESDRGGKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQ 354 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G KF+IGVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G Sbjct: 355 AGGKFSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTGY 414 Query: 427 NETLINTPAYASDPQWVGFMD 447 NE L+ TP+Y SDP W M+ Sbjct: 415 NEQLVKTPSYGSDPAWSPLME 435 >gi|86748935|ref|YP_485431.1| translocation protein TolB [Rhodopseudomonas palustris HaA2] gi|118574594|sp|Q2IZ40|TOLB_RHOP2 RecName: Full=Protein tolB; Flags: Precursor gi|86571963|gb|ABD06520.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] Length = 449 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 188/419 (44%), Positives = 278/419 (66%), Gaps = 8/419 (1%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 +V N +P+ IA FV S +E+GG V++V++ +L+RS +F I Q ++ Sbjct: 34 AFGQARVQITEGNVAPLPIAIPNFVAGTPSDNEVGGGVAQVITNNLKRSGLFAPIDQAAY 93 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KITN D P+F+ W S+ AQ LVTGR+ ++ RL+ EFRLWDV +Q+ G+++F+S Sbjct: 94 VEKITNIDVPPQFKSWTSINAQALVTGRMTRQSDGRLKAEFRLWDVATGQQLAGQQYFTS 153 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P WR+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT Sbjct: 154 PEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPADRRVKRLALMDQDGANVRYLT 213 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D ++ PRFSP+ Q++ Y + D +VYL + + + +GNF M APRFS Sbjct: 214 RGSD-LVLTPRFSPSTQEITYMEFGQGDP-KVYLFNIETGQ-REIVGNFPGMSFAPRFSP 270 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S SYSPD+++I FESDR GK Q Sbjct: 271 DGQRIIMSLQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYSPDAARICFESDRGGKPQ 330 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +YVM ++G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L Sbjct: 331 IYVMPASGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILT 389 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PT++P+GR L+F R G+ G L+++D++GRNE + TP YASDP W + Sbjct: 390 SGFHNEGPTFAPNGRVLMFFRDPGGNAGPSLFTVDVSGRNELRVPTPGYASDPAWSPLL 448 >gi|115526695|ref|YP_783606.1| translocation protein TolB [Rhodopseudomonas palustris BisA53] gi|115520642|gb|ABJ08626.1| transport system periplasmic component [Rhodopseudomonas palustris BisA53] Length = 450 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 183/422 (43%), Positives = 274/422 (64%), Gaps = 8/422 (1%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQ 84 P + A ++ +P+ IA FV+ E+G V++V++ +L+RS +F I Q Sbjct: 32 PHAALAQTRLQITEGTVAPMPIALPNFVAGTPADAEVGIGVAQVITNNLKRSGLFAPIDQ 91 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 +F +KI+N D P+F W ++ AQ LVTGR+ ++ RL+ EFRLWDV +Q+ G+++ Sbjct: 92 AAFIEKISNIDVPPQFPSWKTINAQALVTGRMTRQPDGRLKAEFRLWDVAAGQQLTGQQY 151 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 F+SP WR+IAH ISD IY+ +TGEKG F+SR++F+ E+ L +MD+DGAN+R Sbjct: 152 FTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDETGAKERRVKRLALMDQDGANVR 211 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT D ++ PRFSP Q++ Y + D RVYL + + + +GNF M +PR Sbjct: 212 YLTRGSD-LVLTPRFSPTTQEITYMEFGQGDP-RVYLFNIETGQ-REIVGNFPGMSFSPR 268 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S SY+PD S+I FESDR G Sbjct: 269 FSPDGQRIIMSMQQGGNSNLFVMDLRSKSTTRLTDTPAIDTSPSYAPDGSRICFESDRGG 328 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 K+Q+YVM + G +RIS E +Y PVWSP+GD IAFTK G +F+IG+MK DG+ ER Sbjct: 329 KQQIYVMPAGGGGAQRISF-GEGNYSTPVWSPRGDYIAFTKQGGGQFSIGIMKPDGTGER 387 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 LL + + PT++P+GR L+F R G+ G LY++D++GRNE + TP +ASDP W Sbjct: 388 LLTSGYHNEGPTFAPNGRVLMFFRDPGGNGGPSLYTVDISGRNEQKVPTPGFASDPAWSP 447 Query: 445 FM 446 + Sbjct: 448 LL 449 >gi|298292994|ref|YP_003694933.1| Tol-Pal system beta propeller repeat protein TolB [Starkeya novella DSM 506] gi|296929505|gb|ADH90314.1| Tol-Pal system beta propeller repeat protein TolB [Starkeya novella DSM 506] Length = 452 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 186/420 (44%), Positives = 274/420 (65%), Gaps = 9/420 (2%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSID-----ELGGKVSEVVSKDLQRSDVFNLISQD 85 A +K+ P+ IA T FV E G V++++S DL+RS +F I Sbjct: 35 PAQAVLKLDVTQGTVQPLPIAITDFVGGGSPQDVEAGKGVTQIISADLRRSGLFAPIDPA 94 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 +F +KI+NPD+ PRFQDW + AQ LVTGR+ ++ R++ EFRLWDV +Q+IG+++F Sbjct: 95 AFVEKISNPDASPRFQDWRVINAQALVTGRITRQSDGRVKAEFRLWDVFAGQQLIGQQYF 154 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + P +WR++AH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+ Y Sbjct: 155 TQPENWRRVAHIIADAIYERLTGEKGYFDTRIVFVDESGPKEKRVKRLAIMDQDGANVTY 214 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT D ++ PRFSP Q++ Y +Y + RVYL++ + + +GNF +M +PRF Sbjct: 215 LTRG-DDLVLTPRFSPTSQEITYMSYGRGEP-RVYLLNIE-NGQREVVGNFPNMSFSPRF 271 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + +G+R ++S+Q+ +I+ +DL+S AT RLT+T I+ + YSPD SQI FESDR G Sbjct: 272 APDGQRVILSLQQGADSNIFVMDLRSKATTRLTDTPAIDTAPCYSPDGSQICFESDRGGG 331 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+YVM +GS+Q RIS E Y PVWSP+GD+IAFTK + +FAIG+M+ DG ER+ Sbjct: 332 SQIYVMNPDGSNQHRISF-GEGRYSTPVWSPRGDVIAFTKQAQGRFAIGLMRPDGQGERI 390 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 L E + + PT++P+GR ++F R G+ G +LY++D+ G NE + TP+YASDP W Sbjct: 391 LTEGYHNEGPTFAPNGRVIMFFRDLGGNGGPQLYTVDVTGYNEQRVPTPSYASDPAWSPL 450 >gi|316932664|ref|YP_004107646.1| Tol-Pal system beta propeller repeat-containing protein TolB [Rhodopseudomonas palustris DX-1] gi|315600378|gb|ADU42913.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas palustris DX-1] Length = 444 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 187/419 (44%), Positives = 273/419 (65%), Gaps = 8/419 (1%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 +V N +P+ IA FV S E+G VS+V++ +L+RS +F I Q ++ Sbjct: 29 AFGQARVQITEGNVAPLPIAIPNFVAGTPSDGEVGVGVSQVITNNLKRSGLFAPIDQAAY 88 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KITN D P+F+ W S+ AQ LVTGR+ ++G RL+ EFRLWDV +Q+ G+++F+S Sbjct: 89 LEKITNIDVPPQFKSWASINAQALVTGRMTRQGDGRLKAEFRLWDVATGQQLAGQQYFTS 148 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P WR+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT Sbjct: 149 PEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPAERRVKRLALMDQDGANVRYLT 208 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D ++ PRFSP Q++ Y + + RVYL + + + +GNF M APRFS Sbjct: 209 RGSD-LVLTPRFSPTTQEITYMEFGQGEP-RVYLFNVETGQ-REIVGNFPGMSFAPRFSP 265 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G++ ++S+Q+ +++ +DL+S AT RLT+T I+ S SY+PD S+I FESDR G+ Q Sbjct: 266 DGQKIIMSLQQGGNSNLFVMDLRSKATTRLTDTPAIDTSPSYAPDGSRICFESDRGGRPQ 325 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y+M + G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L Sbjct: 326 IYIMPAGGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILT 384 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PT++P+GR L+F R G G L+++D++GRNE + TP YASDP W + Sbjct: 385 SGFHNEGPTFAPNGRVLMFFRDPGGKAGPSLFTVDVSGRNELRVPTPGYASDPAWSPLL 443 >gi|27382263|ref|NP_773792.1| translocation protein TolB [Bradyrhizobium japonicum USDA 110] gi|27355434|dbj|BAC52417.1| tolB protein [Bradyrhizobium japonicum USDA 110] Length = 491 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 192/441 (43%), Positives = 282/441 (63%), Gaps = 12/441 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEV 68 M + L +L GG ++ + + PV IA T F+ S ++G V++V Sbjct: 50 MTLTGSGLAMLGGG--HAFAQGQPRLRIDPTEFQPVPIAITNFLPGSPSDGDVGNGVTQV 107 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ +L+RS +F I Q +F ++I+N D P+FQ+W ++ AQ LVTGR+ ++ RL+ EF Sbjct: 108 ITNNLKRSGLFAPIDQAAFIERISNIDVAPQFQNWKTINAQALVTGRMTRQPDGRLKAEF 167 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV E+ Sbjct: 168 RLWDVVSGQQLAGQQYFTSPEYWRRIAHIISDQIYERMTGEKGYFDSRVVFVDETGPKER 227 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DGAN+RYLT D ++ PRFSPN Q++ Y + D +VYL + + Sbjct: 228 RVKRLAMMDQDGANVRYLTRGSD-LVLTPRFSPNSQEITYMEFGQGDP-KVYLFNIETGQ 285 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +GNF M APRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S S Sbjct: 286 -REIVGNFPGMTFAPRFSPDGQRVIMSLQQGGNSNLFVMDLRSRSTTRLTDTPAIDTSPS 344 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ---DKEASYFDPVWSPQGDLIAFTK 365 YSPD ++I FESDR G+ Q+YVM + G +RIS D A+Y PVWSP+GD IAFT+ Sbjct: 345 YSPDGTRICFESDRGGRSQIYVMAAGGGAAQRISFSKDDTNATYSTPVWSPRGDYIAFTR 404 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G +F+IGVMK DGS ERLL + + PT+SP+GR L+F R G G LYS+D++G Sbjct: 405 QGGGQFSIGVMKPDGSGERLLTSGFHNEGPTFSPNGRVLMFFRDPGGSGGPSLYSVDISG 464 Query: 426 RNETLINTPAYASDPQWVGFM 446 RNE + TP +ASDP W + Sbjct: 465 RNELKVPTPGFASDPAWSPLL 485 >gi|39934195|ref|NP_946471.1| translocation protein TolB [Rhodopseudomonas palustris CGA009] gi|192289721|ref|YP_001990326.1| translocation protein TolB [Rhodopseudomonas palustris TIE-1] gi|67461966|sp|Q6NAR1|TOLB_RHOPA RecName: Full=Protein tolB; Flags: Precursor gi|39648043|emb|CAE26563.1| putative tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Rhodopseudomonas palustris CGA009] gi|192283470|gb|ACE99850.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas palustris TIE-1] Length = 444 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 189/419 (45%), Positives = 275/419 (65%), Gaps = 8/419 (1%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 +V N +P+ IA FV S E+G VS+V++ +L+RS +F I Q ++ Sbjct: 29 AFGQARVQITEGNVAPLPIAIPNFVAGTPSDAEVGTGVSQVITNNLKRSGLFAPIDQAAY 88 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +KITN D P+F+ W S+ AQ LVTGR+ ++G RL+ EFRLWDV +Q+ G+++F+S Sbjct: 89 LEKITNIDVPPQFKSWASINAQALVTGRMTRQGDGRLKAEFRLWDVATGQQLAGQQYFTS 148 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P WR+IAH ISD IY+ +TGEKG F+SR++F+ ES + L +MD+DGAN+RYLT Sbjct: 149 PEYWRRIAHIISDQIYERLTGEKGYFDSRVVFIDESGPADRRVKRLALMDQDGANVRYLT 208 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D ++ PRFSP Q++ Y + + RVYL + + + +GNF M APRFS Sbjct: 209 RGSD-LVLTPRFSPTNQEITYMEFGQGEP-RVYLFNVETGQ-REIVGNFPGMSFAPRFSP 265 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+R ++S+Q+ +++ +DL+S AT RLT+T I+ S SY+PD S+I FESDR GK Q Sbjct: 266 DGQRIIMSLQQGGNSNLFVMDLRSKATTRLTDTPAIDTSPSYAPDGSRICFESDRGGKPQ 325 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y+M ++G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L Sbjct: 326 IYIMPASGGQAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILT 384 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PT++P+GR L+F R G+ G L+++D++GRNE + TP YASDP W + Sbjct: 385 SGFHNEGPTFAPNGRVLMFFRDPGGNAGPSLFTVDVSGRNELRVPTPGYASDPAWSPLL 443 >gi|92118972|ref|YP_578701.1| translocation protein TolB [Nitrobacter hamburgensis X14] gi|118574587|sp|Q1QHQ6|TOLB_NITHX RecName: Full=Protein tolB; Flags: Precursor gi|91801866|gb|ABE64241.1| TolB-like protein [Nitrobacter hamburgensis X14] Length = 450 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 192/445 (43%), Positives = 284/445 (63%), Gaps = 11/445 (2%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SIDEL 61 F M + VL+GG +V + N +P+ IA FV S E+ Sbjct: 12 FHPSRRQMISGMASAAVLLGG---GRAFGQARVQIDQGNVAPLPIAIPNFVAGSPSDSEV 68 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G V++V++ +L+RS +F I Q ++ +KITN D P+F +W ++ AQ LVTGR+ ++G Sbjct: 69 GAGVAKVITNNLKRSGLFAPIDQAAYIEKITNIDVPPQFANWKTINAQALVTGRMTRQGD 128 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL+ EFRLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV Sbjct: 129 GRLKAEFRLWDVATGQQLAGQQYFTSPEYWRRIAHIISDQIYERLTGEKGYFDSRVVFVD 188 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ES + L +MD+DGAN+RYLT D ++ PRFSP+ Q++ Y + D RVYL Sbjct: 189 ESGAAQHRIKRLALMDQDGANVRYLTRGAD-LVITPRFSPSTQEITYMEFGQGDP-RVYL 246 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + + +GNF M +PRF+ +G+R ++S+Q+ +++ +DL+S +T RLT+T Sbjct: 247 FNIETGQ-REIVGNFPGMSFSPRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTTRLTDTP 305 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ S SYSPD +I FESDR G+ Q+YVM + G +RIS E SY PVWSP+GD I Sbjct: 306 AIDTSPSYSPDGGRICFESDRGGRPQIYVMGATGGAAQRISF-GEGSYSTPVWSPRGDYI 364 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 AFTK G +F+IG++K DGS ER+L + + PT++P+GR L+F R G++G LY+I Sbjct: 365 AFTKQGGGQFSIGIIKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGNSGPSLYTI 424 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D++GRNE + TP +ASDP W + Sbjct: 425 DVSGRNELKVPTPGFASDPAWSPLL 449 >gi|218662997|ref|ZP_03518927.1| translocation protein TolB [Rhizobium etli IE4771] Length = 437 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 204/434 (47%), Positives = 291/434 (67%), Gaps = 7/434 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 I + L+ I F T +A V++ N N P+ IA T F+ +G +VS+V++ DLQ Sbjct: 10 IAVAAGLMTIAAF-ATPANALVEININKGNVQPLPIAVTDFL-QGNMGAQVSQVIAADLQ 67 Query: 75 RSDVFNLIS-QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS +F S + F +KI+NPD+ PRF+DW + AQ LVTGRV +E RLR EFRLWD Sbjct: 68 RSGLFCARSTRQPFIEKISNPDASPRFEDWKVINAQALVTGRVTQEADGRLRAEFRLWDT 127 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L Sbjct: 128 FAGQQMTGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQL 187 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 +MD+DG N+R LT D ++ PRFSP++Q+V Y ++ ++ RVYL+ + + + Sbjct: 188 AIMDQDGFNVRMLTDGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLETGQ-REVV 244 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 GNF M +PRFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD Sbjct: 245 GNFPGMTFSPRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDG 304 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +++ FESDR GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+I Sbjct: 305 ARVSFESDRGGKPQIYVMDADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQSGGKFSI 363 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 GVMK DGS ER+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ T Sbjct: 364 GVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKT 423 Query: 434 PAYASDPQWVGFMD 447 P Y SDP W ++ Sbjct: 424 PTYGSDPAWSPLLE 437 >gi|32699699|sp|Q89ED5|TOLB_BRAJA RecName: Full=Protein tolB; Flags: Precursor Length = 454 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 192/441 (43%), Positives = 282/441 (63%), Gaps = 12/441 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEV 68 M + L +L GG ++ + + PV IA T F+ S ++G V++V Sbjct: 13 MTLTGSGLAMLGGG--HAFAQGQPRLRIDPTEFQPVPIAITNFLPGSPSDGDVGNGVTQV 70 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ +L+RS +F I Q +F ++I+N D P+FQ+W ++ AQ LVTGR+ ++ RL+ EF Sbjct: 71 ITNNLKRSGLFAPIDQAAFIERISNIDVAPQFQNWKTINAQALVTGRMTRQPDGRLKAEF 130 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV +Q+ G+++F+SP WR+IAH ISD IY+ +TGEKG F+SR++FV E+ Sbjct: 131 RLWDVVSGQQLAGQQYFTSPEYWRRIAHIISDQIYERMTGEKGYFDSRVVFVDETGPKER 190 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DGAN+RYLT D ++ PRFSPN Q++ Y + D +VYL + + Sbjct: 191 RVKRLAMMDQDGANVRYLTRGSD-LVLTPRFSPNSQEITYMEFGQGDP-KVYLFNIETGQ 248 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +GNF M APRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S S Sbjct: 249 -REIVGNFPGMTFAPRFSPDGQRVIMSLQQGGNSNLFVMDLRSRSTTRLTDTPAIDTSPS 307 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ---DKEASYFDPVWSPQGDLIAFTK 365 YSPD ++I FESDR G+ Q+YVM + G +RIS D A+Y PVWSP+GD IAFT+ Sbjct: 308 YSPDGTRICFESDRGGRSQIYVMAAGGGAAQRISFSKDDTNATYSTPVWSPRGDYIAFTR 367 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G +F+IGVMK DGS ERLL + + PT+SP+GR L+F R G G LYS+D++G Sbjct: 368 QGGGQFSIGVMKPDGSGERLLTSGFHNEGPTFSPNGRVLMFFRDPGGSGGPSLYSVDISG 427 Query: 426 RNETLINTPAYASDPQWVGFM 446 RNE + TP +ASDP W + Sbjct: 428 RNELKVPTPGFASDPAWSPLL 448 >gi|209886402|ref|YP_002290259.1| Tol-Pal system beta propeller repeat protein TolB [Oligotropha carboxidovorans OM5] gi|209874598|gb|ACI94394.1| Tol-Pal system beta propeller repeat protein TolB [Oligotropha carboxidovorans OM5] Length = 449 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 190/430 (44%), Positives = 279/430 (64%), Gaps = 12/430 (2%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK----VSEVVSKDLQRS 76 L++ F A V++ N N+ P+ IA FV+ + + ++ V++ +L+RS Sbjct: 27 LMMAAPFDRAFGQARVRI--NEGNFQPIPIAIPNFVAGGQADNEVSTGIASVITNNLRRS 84 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I Q ++ ++I+N D P+FQ+W + AQ LVTGR ++G RL+ EFRLWDV Sbjct: 85 GLFAPIDQAAYIERISNIDVAPQFQNWRQINAQALVTGRATRQGDGRLKAEFRLWDVPAA 144 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ G+++F+SP SWR++AH ISD IY+ +TGEKG F+SR++FV E+ L +M Sbjct: 145 QQLTGQQYFTSPESWRRVAHIISDQIYERLTGEKGYFDSRVVFVDETGPKDRRVKRLAMM 204 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN+RYLT D ++ PRFSP Q++ Y + D RVYL + + + +GNF Sbjct: 205 DQDGANVRYLTRGAD-LVLTPRFSPTTQEITYMEFGGGDP-RVYLFNVETGQ-REIVGNF 261 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M APRFS +G+R ++S+Q+ ++Y +DL+S +T RLT+T I+ S SY+PDSS+I Sbjct: 262 PGMSFAPRFSPDGQRIIMSLQQGGNSNLYVMDLRSKSTTRLTDTPAIDTSPSYAPDSSRI 321 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 FESDR GK Q+YVM +NG +RIS + SY PVWSP+GD IAFTK G +FAIG+M Sbjct: 322 CFESDRGGKPQIYVMGANGGAAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIM 380 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L + + PT++P+GR L+F R G G LY++D++GRNE + TP + Sbjct: 381 KPDGSGERILTSGYHNEGPTFAPNGRVLMFFRDLGG--GPNLYTVDISGRNELKVPTPGF 438 Query: 437 ASDPQWVGFM 446 ASDP W + Sbjct: 439 ASDPAWSPLL 448 >gi|148258089|ref|YP_001242674.1| translocation protein TolB [Bradyrhizobium sp. BTAi1] gi|146410262|gb|ABQ38768.1| protein tolB precursor [Bradyrhizobium sp. BTAi1] Length = 462 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 181/420 (43%), Positives = 264/420 (62%), Gaps = 8/420 (1%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 S A +V ++P+ IA F ++G +S+V++ +L+RS +F + + Sbjct: 46 SALAQKRVPILPGEFAPIPIAIPPFVPGGAGDADVGNGISQVITNNLKRSGLFAPVDPAA 105 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 F ++I N ++ P+F W L Q LVTGR ++ RL+ EFRLWD +Q+ G+++ + Sbjct: 106 FPERIANFEAPPQFASWRPLALQGLVTGRATRQPDGRLKAEFRLWDPNSGQQLTGQQYVT 165 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 +P WR+IAH ISD IY +TGEKG F+SR++FV ES S L +MD+DGAN+RYL Sbjct: 166 APEYWRRIAHIISDQIYSQMTGEKGYFDSRVVFVDESGPSERRVKRLALMDQDGANVRYL 225 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T D ++ PRFSP+ Q++ Y + D +VYL++ + + +GNF M +PRFS Sbjct: 226 TRGAD-LVLTPRFSPSSQEITYMEFGQGDP-KVYLLNIETGQ-REIVGNFPGMSFSPRFS 282 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+R ++S+Q+ +++ +DL+S T RLT+T I+ S YSPD +QI FESDR GK Sbjct: 283 PDGQRIILSLQQGGNSNLFVMDLRSRTTTRLTDTPAIDTSPCYSPDGNQICFESDRGGKP 342 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+YVM +NG +RIS E SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L Sbjct: 343 QIYVMPANGGGAQRISF-GEGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKTDGSGERIL 401 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PT+SP+GR L+F R G G LY+ID++GR E + +P YASDP W + Sbjct: 402 TSGFHNEGPTFSPNGRVLMFFRDPGGTAGPSLYTIDVSGRFEQKVPSPGYASDPAWSPLL 461 >gi|254473216|ref|ZP_05086614.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp. JE062] gi|211957937|gb|EEA93139.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp. JE062] Length = 454 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 184/424 (43%), Positives = 271/424 (63%), Gaps = 8/424 (1%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVVSKDLQRSDVFNLISQ 84 +A +++ N P+ IA + F ++ G++S+VV+ DLQRS +F I Sbjct: 35 ISQPAYALIELDITQGNVEPMPIAISPFAGSGLQEDVAGQISQVVAADLQRSGLFRPIDP 94 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + Q+ N ++PRF DW ++G+Q LVTG + ++ ++R EFRLWDV +Q+IG++F Sbjct: 95 AAHIQQEMNVGTMPRFGDWRTIGSQALVTGSIAQQANGQIRAEFRLWDVFAGQQLIGQQF 154 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 F++P +WR++AH ISD IYQ +TGEKG F++R++F+ ES + L +MD+DGAN+R Sbjct: 155 FTTPENWRRLAHIISDAIYQRLTGEKGYFDTRVVFIDESGPKDARRKRLAIMDQDGANVR 214 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT D ++ PRFSP Q+V Y +Y + +VYL + + + +GNF M APR Sbjct: 215 YLTRG-DDLVLTPRFSPVSQEVTYMSYVGGNP-QVYLFNIETGQ-REVLGNFPGMTFAPR 271 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G++ ++S+Q+ ++Y +DL++ T RLTNT I+ S S+SPD Q+VFESDR G Sbjct: 272 FSPDGQKVIMSLQQGSNANLYLMDLRTRRTTRLTNTAAIDTSPSFSPDGRQVVFESDRGG 331 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 +QLYVM SNGS +RIS Y PVWSP+GDLIAFTK +F IGV++ DG ER Sbjct: 332 SQQLYVMNSNGSGAERISF-GPGQYSTPVWSPRGDLIAFTKVHQGRFMIGVIRPDGKGER 390 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +L E + + P WSP+GR L F R G G +++++DL G NE L+ TP +ASDP W Sbjct: 391 ILTEGYHNEGPAWSPNGRVLTFFRDTVGEQGGPQVWTVDLTGYNEQLVQTPNFASDPAWS 450 Query: 444 GFMD 447 +D Sbjct: 451 PLLD 454 >gi|300023930|ref|YP_003756541.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium denitrificans ATCC 51888] gi|299525751|gb|ADJ24220.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium denitrificans ATCC 51888] Length = 445 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 187/450 (41%), Positives = 278/450 (61%), Gaps = 8/450 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID- 59 MS + + L + + L L GF T A +K +P+ IA FV D Sbjct: 1 MSPKNPLQYALAFICLIAVGLALDSGF-ATRAQAQLKGTQTEGTIAPIPIAIPLFVGDDP 59 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 +L VS+V+ DL+RS +F + + SF ++I + +++PRF DW S+ A LV GR++ Sbjct: 60 QLAANVSDVLQADLERSGLFRPLDRASFLEQIRDVNAVPRFGDWRSVQADALVVGRIVNA 119 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G R+ EFRLWDV KQ+ G++F +S +WR+IAH I+D +Y+ +TGEKG F++R++F Sbjct: 120 GDGRVGAEFRLWDVASGKQLAGQRFSTSAQNWRRIAHMIADSVYERLTGEKGYFDTRVVF 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V E+ + L +MD+DGAN+R LT ++ ++ PRFSP Q++ Y +Y D +V Sbjct: 180 VDETGPAQNRVKRLAIMDQDGANVRLLTQGKE-LVLTPRFSPTNQEITYMSY-TSDQPKV 237 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERLT 298 ++M+ R + +G+F M APRFS +G+R ++S+ D IY +DL++ RLT Sbjct: 238 FIMNLESGR-RELVGDFPGMTFAPRFSPDGQRVVMSLGTPDGRSSIYEMDLRTRQPRRLT 296 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + I+ S SYSPD QIVFESDR+G ++LYVM ++GS IS SY PVWSP+G Sbjct: 297 ESSGIDTSPSYSPDGRQIVFESDRDGTQKLYVMNADGSGAHPISLGG-GSYSTPVWSPRG 355 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-GSK 417 D IAFT+ +G +F IGVMK DGS ER+L E + + PTW+P+GR L+F R + G K Sbjct: 356 DYIAFTQQAGGRFLIGVMKPDGSGERVLTEGFHNEGPTWAPNGRVLMFWRDSQSTSGGPK 415 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGFMD 447 +YS+D+ G NE + TP++ASDP W ++ Sbjct: 416 IYSVDITGFNERQVTTPSFASDPAWSPLLN 445 >gi|121601818|ref|YP_988482.1| translocation protein TolB [Bartonella bacilliformis KC583] gi|120613995|gb|ABM44596.1| Tol-Pal system beta propeller repeat protein TolB [Bartonella bacilliformis KC583] Length = 442 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 183/430 (42%), Positives = 282/430 (65%), Gaps = 5/430 (1%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 ++ + + F + HA +K + A+++P+ IA T F++ D +G K++ V++ DL+RS Sbjct: 13 FIISMSVCLFSGSFAHAQLKGTISKADFNPIPIAITDFIAQDSIGQKIAAVIAADLERSG 72 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F + +DSF +KIT+P+ P F +W L AQ LVTG + + RLR++FRLWDV K Sbjct: 73 LFKTLDKDSFLEKITDPNGQPNFSNWQQLNAQGLVTGYIHSDSNGRLRIDFRLWDVFTHK 132 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 QI G++F+++ WR++AH ISD+IY +TGE G F++R++FV E+ L +MD Sbjct: 133 QIKGRRFYTTTEHWRRVAHMISDEIYSKMTGESGYFDTRVVFVDETGPFNARIKRLAIMD 192 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGAN+ YL+ + ++ PRFSP++Q++ Y YD VYL + + IG F Sbjct: 193 QDGANLTYLSNGTE-LVLTPRFSPSRQEITYMAYDKHKTAHVYLQQIETGQ-RELIGTFD 250 Query: 258 SMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +M +APRFS +G++ ++S+ KD + ++Y++DL++ RLT T I+ SASYSPD QI Sbjct: 251 NMTIAPRFSPDGQKVIMSLLKDNGSANLYTMDLRTRTITRLTTTRAIDTSASYSPDGKQI 310 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR+GK Q+Y+M ++GS+ RIS + E SY P WSP+GD IAFTK S +F+IGVM Sbjct: 311 VFSSDRDGKPQIYIMDADGSNPHRISAN-EGSYSTPTWSPRGDYIAFTKQSQGQFSIGVM 369 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 +G ERLL + + PTW+P+GR L+F R ++ + G+++Y+ID+ GRNE + TP Sbjct: 370 HPNGQGERLLTTGFHNEGPTWAPNGRVLMFFR-QNANQGAQIYTIDITGRNERRLPTPNN 428 Query: 437 ASDPQWVGFM 446 ASDP W + Sbjct: 429 ASDPAWSPLL 438 >gi|299134178|ref|ZP_07027371.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp. 1NLS2] gi|298590925|gb|EFI51127.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp. 1NLS2] Length = 447 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 181/416 (43%), Positives = 268/416 (64%), Gaps = 10/416 (2%) Query: 35 FVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 V+V + N+ P+ IA F E+ ++ V++ +L+RS +F I Q ++ ++ Sbjct: 37 QVRVQVDQGNFQPIPIAIPNFVAGGQGDGEVSAGIASVITNNLKRSGLFAPIDQAAYIER 96 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 I+N D P+F W + AQ LVTGR ++ RL+ EFRLWDV +Q+ G+++F+SP S Sbjct: 97 ISNIDVPPQFPSWRQINAQALVTGRATRQSDGRLKAEFRLWDVPAAQQLTGQQYFTSPES 156 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 WR++AH ISD IY+ +TGEKG F+SR++FV ES + L +MD+DGAN+RYLT Sbjct: 157 WRRVAHIISDQIYERLTGEKGYFDSRVVFVDESGPAQRRVKRLTIMDQDGANVRYLTRGA 216 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D ++ PRFSP+ Q++ Y + D RVYL + + + +GNF M APRFS +G+ Sbjct: 217 D-LVLTPRFSPSTQEITYMEFGGGDP-RVYLFNVETGQ-REIVGNFPGMSFAPRFSPDGQ 273 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R ++S+Q+ ++Y +DL+S +T RLT+T I+ S SY+PD S+I FESDR GK Q+YV Sbjct: 274 RIIMSLQQGGNSNLYVMDLRSKSTTRLTDTPAIDTSPSYAPDGSRICFESDRGGKPQIYV 333 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M + G +RIS + SY PVWSP+GD IAFTK G +FAIG+MK DGS ER+L Sbjct: 334 MAAGGGAAQRISF-GDGSYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGF 392 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PT++P+GR ++F R G L+++D++GRNE + TP +ASDP W + Sbjct: 393 HNEGPTFAPNGRVVMFFRDLG--AGPHLFTVDISGRNELQVPTPGFASDPAWSPLL 446 >gi|154246985|ref|YP_001417943.1| beta-propeller repeat-containing to-pal system protein TolB [Xanthobacter autotrophicus Py2] gi|154161070|gb|ABS68286.1| Tol-Pal system beta propeller repeat TolB [Xanthobacter autotrophicus Py2] Length = 450 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 179/412 (43%), Positives = 266/412 (64%), Gaps = 5/412 (1%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A ++ + P+ IA T + E+G +S V++ DL+RS +F I +F ++ITN Sbjct: 42 AQPRIDLTPGAFKPIPIAITDLLGEVEIGRNISGVITADLRRSGLFAPIDPKAFVEQITN 101 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 PD+ PRFQDW + AQ L+TGRV ++ R +V FRLWDV +Q+ ++F + P +WR+ Sbjct: 102 PDT-PRFQDWRVINAQALLTGRVTRQADGRFQVVFRLWDVFAGQQLAAQQFVAQPDNWRR 160 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 IAH I+D IY+ +TGEKG F++RI+FV ES L +MD+DGAN+ YL+ D + Sbjct: 161 IAHIIADAIYEKMTGEKGYFDTRIVFVDESGPKERRVKRLAIMDQDGANVSYLSRG-DGL 219 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PRFSP Q++ Y +Y D +V+L++ + + +GNF M +PRF+ +G+R + Sbjct: 220 VLTPRFSPTSQEITYMSYGAGDP-KVFLLNIETGQ-REIVGNFPGMSFSPRFAPDGQRVI 277 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +S+Q+ +I+ +DL+S AT RLT+T I+ + YSPD QI FESDR G Q+YVM + Sbjct: 278 MSLQQGGNSNIFVMDLRSRATTRLTDTAAIDTAPCYSPDGRQICFESDRGGTSQIYVMNA 337 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +GS +RIS A Y PVWSP+GD IA+T+ + +FAIGVM+ DGS ER+L E + + Sbjct: 338 DGSGARRISF-GNARYSTPVWSPKGDWIAYTRQAEGRFAIGVMRTDGSGERVLTEGYHNE 396 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 PT++P+GR ++F R G +G LYS+D+ G NE + TP+YASDP W Sbjct: 397 GPTFAPNGRVIMFFRDPGGASGPSLYSVDVTGYNEQRVPTPSYASDPAWSPL 448 >gi|49476141|ref|YP_034182.1| translocation protein TolB [Bartonella henselae str. Houston-1] gi|67461959|sp|Q6G5R6|TOLB_BARHE RecName: Full=Protein tolB; Flags: Precursor gi|49238949|emb|CAF28247.1| tolB protein [Bartonella henselae str. Houston-1] Length = 443 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 183/433 (42%), Positives = 283/433 (65%), Gaps = 5/433 (1%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 + + + F +HA +K ++A+++P+ IA T F S D +G K++ VV+ DL+R Sbjct: 13 FIVICAFWLTSFSSVPVHAQLKGTISTADFNPIPIAVTDFFSNDSIGLKIAAVVAADLER 72 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F + + SF +KI+NP+ P F W + AQ LV G+VI+E RLRV+FRLWDV Sbjct: 73 SGLFLPLDKASFLEKISNPNRQPHFPYWQEIKAQGLVIGQVIRENDGRLRVDFRLWDVFG 132 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++Q+ G++F+++ WR++AH I+D+IY +TGE G F++RI+F+ E+ L + Sbjct: 133 QRQLKGRRFYTATERWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGPQNARIKRLAI 192 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN+ Y++ + ++ PRFSP +Q++ Y Y+ + VYL + + + IG Sbjct: 193 MDQDGANLIYISDGSE-LVLTPRFSPKRQEITYMAYEHNQVPHVYLQQIEMGQ-RELIGT 250 Query: 256 FRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F +M +APRFSS+G++ ++S +Q D + ++Y++DL++ RLT T I+ SASYSPD + Sbjct: 251 FNNMTIAPRFSSDGQKVIMSLLQNDGSANLYTMDLRTRMMTRLTTTSAIDTSASYSPDGT 310 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR GK Q+Y M ++GS+ +RIS + E SY P+WSP+GD IAFTK +F+IG Sbjct: 311 KIVFSSDRSGKPQIYTMNADGSNLQRISSN-EGSYSTPIWSPRGDYIAFTKQLEGQFSIG 369 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM DG ER+L + + PTW+P+GR L+F RK G G K+Y+ID+ GRNE + TP Sbjct: 370 VMHPDGQGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDITGRNERQLPTP 428 Query: 435 AYASDPQWVGFMD 447 ASDP W ++ Sbjct: 429 NDASDPAWSPLLN 441 >gi|295688123|ref|YP_003591816.1| Tol-Pal system beta propeller repeat-containing protein Tolb [Caulobacter segnis ATCC 21756] gi|295430026|gb|ADG09198.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter segnis ATCC 21756] Length = 443 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 175/444 (39%), Positives = 260/444 (58%), Gaps = 9/444 (2%) Query: 7 IAEELNMKINLCLLLVLI---GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG 63 + +E M++ LL+V G F T A ++V N+ P+ IA F G Sbjct: 6 VKKETPMRLRALLLMVAALMSGAAFVTPAAAQIEVDINAGAVKPMPIAIPAFSGATR-GA 64 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++++V+S +L+RS +F ++ K+++ + PRF DW + GAQ L+ G+V Sbjct: 65 EIAQVISGNLERSGLFQPLNVSGVADKLSDVNIQPRFPDWQTTGAQALINGQVTVGPDGG 124 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 LRV+FRLWDV ++Q++G +F S+P +WR++AH ISD +Y+ +TGEKG F++R+ FV+ES Sbjct: 125 LRVDFRLWDVFSQQQLLGLQFSSTPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAES 184 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L +MD+DGAN +YLT I+ PRFS Q++ Y +YL++ Sbjct: 185 GPKLNRIKRLAIMDQDGANPQYLTDG-SYIVMTPRFSSTSQELTYMALRPTGS-SIYLLN 242 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R +G F M+ APRFS +G + SV+K+ DIY +DL+S +T R+T I Sbjct: 243 LETSRQET-VGKFPGMVFAPRFSPDGGKVAFSVEKNGNSDIYVMDLRSRSTTRITTDPSI 301 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + S S+SPD ++IVF SDR G+ Q+YVM ++GS +RIS Y PVWSP+GD IAF Sbjct: 302 DTSPSFSPDGTKIVFNSDRGGQAQIYVMNTDGSGVRRISFGG-GRYTTPVWSPRGDFIAF 360 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 TK +G +F IGVM+ DG ERLL + PTW+P+GR L+F R+ G KL+++D+ Sbjct: 361 TKQTGGQFHIGVMRPDGGDERLLTTSYLDEGPTWAPNGRVLMFFRE-GGGGNPKLWTVDI 419 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 GR SDP W +D Sbjct: 420 TGRILRPAAYNGSGSDPAWSPLLD 443 >gi|288957825|ref|YP_003448166.1| TolB protein [Azospirillum sp. B510] gi|288910133|dbj|BAI71622.1| TolB protein [Azospirillum sp. B510] Length = 450 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 174/453 (38%), Positives = 268/453 (59%), Gaps = 17/453 (3%) Query: 7 IAEELNMKINLC----LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID--- 59 + + + + L LL+ +G P A +++ P+ IA T F Sbjct: 1 MTTKTRLLLKLAGATGALLLSLGVAAPQEARAELRIDITRGVSEPLPIAITSFAGSGGRD 60 Query: 60 -ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVI 117 ++G +S+V+S DL+RS +F + F Q PR+QDW +LGAQ LV G Sbjct: 61 AQMGADISKVISDDLERSGLFKPLDPRGFLQTPDQLRSGEPRYQDWKALGAQALVAGNTT 120 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G R++V+FRLWDV + + G + +SP WR+IAH ++D IY+ +TGE G F++RI Sbjct: 121 TGGDGRMKVDFRLWDVAAGQYMQGLSYSASPQEWRRIAHIVADAIYKRLTGEDGYFDTRI 180 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 ++V+ES + K L +MD+D AN ++LT + ++ PRFSP Q++ Y +Y ++ Sbjct: 181 VYVAESGPANARKKQLAIMDQDSANHQFLTDGQ-TLVLTPRFSPTSQEITYMSYFNKKP- 238 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 RVYL + R + +G+F M APRFS +G + ++S+ ++ DIY++DL++ +L Sbjct: 239 RVYLFNIDTGRQ-EVLGDFPGMTFAPRFSPDGNKVIMSMAQNGNTDIYTLDLRTRRQTQL 297 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ I+ + SYSPD +IVFESDR G +QLY+M ++GS KR++ E Y PVWSP+ Sbjct: 298 TDAPGIDTAPSYSPDGQRIVFESDRGGTQQLYIMGADGSGVKRLTF-GEGRYGTPVWSPR 356 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGD 413 GDLIAFT+ G FA+GV++ DG+ ER+L E +++ PTW+P+GR L+F Sbjct: 357 GDLIAFTRQRGSSFAVGVIRPDGTGERILTEAFHVEGPTWAPNGRVLMFFKDLPSGDGRG 416 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +KLYSID+ G NE ++TP ASDP W + Sbjct: 417 RNAKLYSIDITGANERRVSTPVDASDPAWSPLI 449 >gi|319409339|emb|CBI82983.1| TolB protein [Bartonella schoenbuchensis R1] Length = 444 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 192/439 (43%), Positives = 289/439 (65%), Gaps = 8/439 (1%) Query: 12 NMKINLCLLLVLIGGFFPTS---IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 M+ L L++ + +S HA +K +SA+++P+S+A T F+S D +G K++ V Sbjct: 3 GMRYTLFSWLIVTISVWLSSFSSAHAQLKGTISSADFNPISVAITDFISNDSIGLKIAAV 62 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+ DL+RS +F+L+++ SF + I NPDS PRF +W Q LVTG V +E RLRV+F Sbjct: 63 VAADLERSGLFSLLNKASFPETIINPDSQPRFLEWQHTNIQGLVTGHVNREASGRLRVDF 122 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV +QI G++F+++P WR++AH ++D+IY +TGE+G F++RI+FV E+ Sbjct: 123 RLWDVFGNRQIKGRRFYTTPEHWRRVAHMVADEIYSKMTGERGYFDTRIVFVDETGPRDA 182 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DGAN+ YL+ + ++ PRFSPN+Q++ Y YD VYL + + Sbjct: 183 RVKRLAIMDQDGANLTYLSDGSE-LVLTPRFSPNRQEITYMAYDKNKTPHVYLQQIEMGQ 241 Query: 249 APKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + IG F +M +APRFS +G++ ++S +Q + + ++Y++DL++ RLT T I+ SA Sbjct: 242 -RELIGTFDNMTIAPRFSPDGQKVIMSLLQNNGSANLYTMDLRTRTMTRLTTTKAIDTSA 300 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD QIVF SDR+G Q+YVM ++G++ RIS + E +Y PVWSP+GD IAFTK Sbjct: 301 SYSPDGKQIVFSSDRDGTPQIYVMNADGTNPYRISFN-EGNYSTPVWSPRGDYIAFTKQF 359 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 +F+IGVM DG ERLL + + PTW+P+GR L+F R+ G G+K+Y+ID+ GRN Sbjct: 360 QGQFSIGVMHPDGQGERLLTTGFHNEGPTWAPNGRVLMFFRQNAG-VGTKIYTIDITGRN 418 Query: 428 ETLINTPAYASDPQWVGFM 446 E + TP ASDP W + Sbjct: 419 ERQLPTPHDASDPAWSALL 437 >gi|49474671|ref|YP_032713.1| translocation protein TolB [Bartonella quintana str. Toulouse] gi|67461954|sp|Q6FYQ1|TOLB_BARQU RecName: Full=Protein tolB; Flags: Precursor gi|49240175|emb|CAF26641.1| tolB protein [Bartonella quintana str. Toulouse] Length = 440 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 189/440 (42%), Positives = 291/440 (66%), Gaps = 7/440 (1%) Query: 11 LNMKINLCLLLVLIGGFFPT--SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +I +V+ + + S+HA +K +SA+++P+ IA T FVS D +G K++ V Sbjct: 3 MTRRIFFSWFIVICSLWLSSFSSVHAKLKGTISSADFNPIPIAITDFVSNDSIGLKIAAV 62 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+ DL+RS +F + + SF +KI+NP+S P F W + AQ LVTG+VI+E RLRV+F Sbjct: 63 VTADLERSGLFLPLDKASFFEKISNPNSQPHFFHWQKIRAQGLVTGQVIRENDGRLRVDF 122 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV +Q+ G++F+++ WR++AH I+D+IY +TGE G F++RI+F+ E+ Sbjct: 123 RLWDVFGHQQLKGRRFYTATERWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGPQNA 182 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DGAN+ Y++ + ++ PRFSP +Q++ Y Y+ VYL + + Sbjct: 183 RIKRLAIMDQDGANLIYISDGSE-LVLTPRFSPKRQEITYMAYERNQPPHVYLQQIEMGQ 241 Query: 249 APKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + IG F++M +APRFSS+G++ ++S +Q + + ++Y++DL++ RLT T I+ SA Sbjct: 242 -RELIGTFKNMTIAPRFSSDGQKVIMSLLQNNGSANLYTMDLRTRMMTRLTTTSAIDTSA 300 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD +QIVF SDR GK Q+Y M ++GS+ +RIS + E SY P+WSP+GD IAFTK Sbjct: 301 SYSPDGTQIVFSSDRSGKPQIYTMNADGSNLQRISAN-EGSYSTPIWSPRGDYIAFTKQL 359 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 +F+IGVM+ DG ER+L + + PTW+P+GR L+F RK G G K+Y+ID+ GRN Sbjct: 360 EGQFSIGVMRPDGKGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDITGRN 418 Query: 428 ETLINTPAYASDPQWVGFMD 447 E + TP ASDP W ++ Sbjct: 419 ERQLPTPNDASDPAWSPLLN 438 >gi|83312310|ref|YP_422574.1| translocation protein TolB [Magnetospirillum magneticum AMB-1] gi|118574583|sp|Q2W2B0|TOLB_MAGMM RecName: Full=Protein tolB; Flags: Precursor gi|82947151|dbj|BAE52015.1| Periplasmic component of the Tol biopolymer transport system [Magnetospirillum magneticum AMB-1] Length = 447 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 167/443 (37%), Positives = 257/443 (58%), Gaps = 13/443 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEV 68 + + V++G A V++ P+ IA F +G ++ V Sbjct: 8 RSLAAFAVFVILGVAAVLPAQAEVRIDITRGQMKPLPIAIPDFAGASAQDNRMGADIARV 67 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 VS DL+RS +F I +F Q + + PRF DW ++ A+ LV+G++ R+RVEF Sbjct: 68 VSADLERSGLFKPIDPKAFIQNAASLQAGPRFPDWKAINAEALVSGKIESGADGRVRVEF 127 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV + + G +SP WR+++H ++D IY+ +TGE G F+++I++++ES Sbjct: 128 RLWDVFNEAYMTGWTLSASPQDWRRLSHKVADAIYKRVTGEDGYFDTQIVYIAESGPKND 187 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K L +MD+DG N R+LT + ++ PRFSP+ +++ Y +Y + + RVY+ + R Sbjct: 188 RKKRLSIMDQDGENHRFLTDGSE-LVLTPRFSPSAREITYLSY-FKGVPRVYIFNLDTGR 245 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +GNF M APRFS +G + + S+ ++ +IY ++L + +LT I+ + S Sbjct: 246 -RESLGNFPGMTFAPRFSPDGNKVVFSMAENGNTEIYEMNLLTRQKRQLTMNPAIDTAPS 304 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 YSPD QIVFESDR G +Q+Y M ++GS+ +RIS + Y PVWSP+GDLIAFTK G Sbjct: 305 YSPDGQQIVFESDRGGGQQIYTMSADGSNPQRISF-GDGRYGTPVWSPRGDLIAFTKQKG 363 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-----KKDGDTGSKLYSIDL 423 +F IGVM+ DGS ERLL E ++ PTW+P+GR L F R ++ +LY+IDL Sbjct: 364 GQFFIGVMRTDGSGERLLAEGFLVEGPTWAPNGRVLSFFRESPSDERGRGQVVRLYTIDL 423 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 G NE ++ TP SDP W + Sbjct: 424 TGVNERVLLTPVDGSDPAWSPLI 446 >gi|83592430|ref|YP_426182.1| translocation protein TolB [Rhodospirillum rubrum ATCC 11170] gi|118574596|sp|Q2RVF0|TOLB_RHORT RecName: Full=Protein tolB; Flags: Precursor gi|83575344|gb|ABC21895.1| TolB protein [Rhodospirillum rubrum ATCC 11170] Length = 443 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 174/447 (38%), Positives = 261/447 (58%), Gaps = 14/447 (3%) Query: 4 RFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE--- 60 + L + L +++ I A + + P+ IA F D Sbjct: 6 KGKWRSTLGAMMALAVMVAAI-----PQARAELVIDITRGVREPMPIAIPVFGGTDAQSS 60 Query: 61 -LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 +G V VVS DLQ S +F ++ ++ Q + N P+F DW ++ AQ LV G V + Sbjct: 61 AMGRDVVGVVSNDLQGSGLFRVLDPAAYIQSLPNLAVQPQFADWRAINAQALVQGEVQPQ 120 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G RLRV FRLWDV +Q++G+ F + +WR+++H I+D+IY++ITGE+G F++R+++ Sbjct: 121 GDGRLRVAFRLWDVFSGQQVVGRAFLTQGDNWRRVSHIIADEIYKAITGEEGYFDTRVVY 180 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V+E+ L +MD+DGAN R LT + ++ PRFSP Q++ Y +Y + RV Sbjct: 181 VAETGPKTNRVKKLAIMDQDGANQRNLTNG-ESMVLTPRFSPTAQEITYLSY-YNSVPRV 238 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 YL + R + +G+F M APRFS +G + ++S+ D +IY +DL++ + RLTN Sbjct: 239 YLFNIETGR-RELLGDFPGMTFAPRFSPDGNKVIMSMALDGNTEIYEMDLRTRRSSRLTN 297 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I+ S SY+PD QI F SDR G +Q+YVM ++GS +RIS + Y PVWSP+GD Sbjct: 298 HPSIDTSPSYAPDGRQITFNSDRGGAQQIYVMNADGSGVQRISF-GDGRYATPVWSPRGD 356 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 LIAFTK G +F IG M+ DGS E++L E ++ PTW+P+GR L+F R+ + L+ Sbjct: 357 LIAFTKLKGGRFFIGAMRPDGSGEKILTEGFLVEGPTWAPNGRVLMFFRQDPNGRTT-LH 415 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFM 446 SID+ G NE I+TP ASDP W + Sbjct: 416 SIDVTGYNERQISTPTEASDPAWSPLL 442 >gi|144897899|emb|CAM74763.1| TOLB PROTEIN PRECURSOR [Magnetospirillum gryphiswaldense MSR-1] Length = 451 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 175/451 (38%), Positives = 259/451 (57%), Gaps = 20/451 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSE 67 ++I L L ++G + A V++ N P+ IA + + G ++ Sbjct: 4 RIRIALVGLFAVLGLLAAPAAMAEVRIDITRGNMKPLPIAVPELFGAQPAEVQAGRDIAR 63 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV+ DL+RS +F I Q +F Q + + PRF DW + A+ LV+G++ G L +E Sbjct: 64 VVAADLERSGLFKPIDQRAFIQNAASLQAGPRFADWRQINAEALVSGKIEVSGDGDLMIE 123 Query: 128 FRLWDVKDRKQIIGKKFFS-------SPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 FRLWDV Q+IG ++ +P WR+ AH I+D IY+ +TGE G F+++++++ Sbjct: 124 FRLWDVFSETQMIGTRYNIAGKDIRRNPNLWRRAAHQIADAIYKRVTGEDGYFDTQLIYI 183 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SES K L +MD+DG N R+LT D ++ PRFSP +++ Y +Y RVY Sbjct: 184 SESGPKNDRKKRLAIMDQDGENHRFLTSGED-LVLTPRFSPTAREITYMSY-FRGTPRVY 241 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ R + +G+F M APRFS +G + ++S+ +D +IY ++L + RLTN Sbjct: 242 ILQIDTAR-RELLGDFPGMTFAPRFSPDGNKVIMSLSQDGNTEIYEMNLLTRQKARLTNH 300 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S SYSPDS+++VF SDR G +QLY M ++GS RIS + Y PVWSP+GDL Sbjct: 301 PSIDTSPSYSPDSTRVVFNSDRGGAQQLYTMNADGSGVARISF-GDGRYATPVWSPRGDL 359 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF----SRKKDGDTG- 415 IAFTK G +F IGVM+ DGS ERLL + ++ PTW+P+GR L F + G G Sbjct: 360 IAFTKMKGGEFFIGVMRPDGSDERLLAQGYLVEGPTWAPNGRVLAFWKETASDSQGRGGT 419 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +KLY+IDL G NE + TP SDP W + Sbjct: 420 AKLYTIDLTGFNERQVITPLDGSDPAWSPLI 450 >gi|254455821|ref|ZP_05069250.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus Pelagibacter sp. HTCC7211] gi|207082823|gb|EDZ60249.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus Pelagibacter sp. HTCC7211] Length = 447 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 182/446 (40%), Positives = 270/446 (60%), Gaps = 23/446 (5%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV-------------SIDELGGKV 65 L+ + + P A ++V N +P+ +A + + +G ++ Sbjct: 5 LIFICLFLIIPIKAFALIEVDITRGNLNPLPLAVSPLSIDENSKKSFEKILDKENIGSEI 64 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S +V +L+ S +FN +++D+F Q + PRF+DWN + AQ L+TG+V ++LR Sbjct: 65 SIIVENNLRTSGLFNPLNKDAFLQAPDIANLKPRFEDWNLIKAQALITGKVAYI-DEKLR 123 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 VEFRLWDV K+++ F + P +WR++ H ISD IY+ +TGEKG F++RI++V+E Sbjct: 124 VEFRLWDVLAGKEMMALAFTTVPNNWRRVGHIISDKIYERLTGEKGYFDTRIIYVAEEGP 183 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 K L +MD+DGAN ++LT + ++ PRF+P Q V Y +Y +++ RVYL+D Sbjct: 184 KTQRKKKLAIMDQDGANNKFLTLGNE-LVLTPRFNPTSQMVTYLSY-FKNLPRVYLLDIE 241 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + +G+F M APRFS +GK+ ++S KD DI+++DL++ ER+TN I+ Sbjct: 242 TGTQ-EVVGDFPGMTFAPRFSPDGKKIIMSFAKDGKSDIFTMDLENRIVERITNHPSIDT 300 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SYSP+ I F SDR G +Q+Y+M+++GSD KRIS Y PVWSP+GDLIAFTK Sbjct: 301 SPSYSPNGKFIAFNSDRSGYQQIYIMKNDGSDVKRISF-GNGIYGTPVWSPRGDLIAFTK 359 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGDTGSKLYS 420 KF IGVM+ DG+ ERLL E+ +AP+WSP+GR LIF R+ K +KL+S Sbjct: 360 LHNGKFYIGVMRTDGTGERLLTENYYQEAPSWSPNGRVLIFYRETKTNAKGEGFSAKLWS 419 Query: 421 IDLNGRNETLINTPAYASDPQWVGFM 446 IDL G NE L+ TP ASDP W + Sbjct: 420 IDLTGYNERLVTTPTDASDPSWSSLL 445 >gi|221236273|ref|YP_002518710.1| translocation protein TolB [Caulobacter crescentus NA1000] gi|220965446|gb|ACL96802.1| TolB protein [Caulobacter crescentus NA1000] Length = 443 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 169/423 (39%), Positives = 249/423 (58%), Gaps = 6/423 (1%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 G F T A ++V N+ P+ IA F G ++++V++ +L+RS +F ++ Sbjct: 27 GAAFVTPAAAQIEVDINAGAVKPLPIAIPVFSGSTR-GAEIAQVITGNLERSGLFQPLNV 85 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 K+ + + PRF DW S GAQ L+ G+V LRV+FRLWDV ++Q++G +F Sbjct: 86 AGVPDKLADVNVQPRFPDWQSTGAQALINGQVTVGADGGLRVDFRLWDVFSQQQLLGLQF 145 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S+P +WR++AH ISD +Y+ +TGEKG F++R+ FV+ES L +MD+DGAN + Sbjct: 146 SSTPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQ 205 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT I+ PRFS Q++ Y +YL++ R +G F M+ APR Sbjct: 206 YLTDG-SYIVMTPRFSSTSQELTYMALRPTGS-SIYLLNLETSRQET-VGKFPGMVFAPR 262 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + SV+++ DIY +DL+S AT R+T I+ S S+SPD ++IVF SDR G Sbjct: 263 FSPDGSKVAFSVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGG 322 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + Q+YVM ++GS +RIS Y PVWSP+GD IAFTK +G +F IGVM+ DG ER Sbjct: 323 QAQIYVMNTDGSGVRRISYGG-GRYTTPVWSPRGDFIAFTKQTGGEFHIGVMRADGGDER 381 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 LL + PTW+P+GR L+F R+ +L+++D+ GR ASDP W Sbjct: 382 LLTTSYLDEGPTWAPNGRVLMFFRE-GPSGNPRLWTVDITGRILRPAAYSGSASDPAWSP 440 Query: 445 FMD 447 +D Sbjct: 441 LLD 443 >gi|23015569|ref|ZP_00055341.1| COG0823: Periplasmic component of the Tol biopolymer transport system [Magnetospirillum magnetotacticum MS-1] Length = 444 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 169/440 (38%), Positives = 255/440 (57%), Gaps = 13/440 (2%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSK 71 V++G A V++ P+ IA +F +G ++ VVS Sbjct: 8 AAAAAFVILGVVAALPASAEVRIDITRGQMKPLPIAIPEFAGASAQDNRVGADIARVVSA 67 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+RS +F I +F Q + + PRF DW ++ A+ LV+G++ R+RVEFRLW Sbjct: 68 DLERSGLFKPIDPKAFIQNAASLQAGPRFPDWKAINAEALVSGKIESGADGRIRVEFRLW 127 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV + + G +SPA WR+++H ++D IY+ +TGE G F+++I++++ES K Sbjct: 128 DVFNEAYMTGWTLSASPADWRRLSHKVADAIYKRVTGEDGYFDTQIVYIAESGPKNDRKK 187 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +MD+DG N R+LT + ++ PRFSP+ +++ Y +Y + + RVY+ + R + Sbjct: 188 RLSIMDQDGENHRFLTDGSE-LVLTPRFSPSAREITYLSY-FKGVPRVYIFNLDTGR-RE 244 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +GNF M APRFS +G + + S+ + +IY ++L + +LT I+ + SYSP Sbjct: 245 SLGNFPGMTFAPRFSPDGNKVIFSMAESGNTEIYEMNLLTRQKRQLTYNPAIDTAPSYSP 304 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D QIVFESDR G +QLYVM ++G + RIS + Y PVWSP+GDLIAFTK G +F Sbjct: 305 DGQQIVFESDRGGGQQLYVMGADGGNATRISF-GDGRYATPVWSPRGDLIAFTKQKGGQF 363 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-----KKDGDTGSKLYSIDLNGR 426 IGVM+ DGS ERLL E ++ PTW+P+GR L F R ++ +LY+IDL G Sbjct: 364 FIGVMRTDGSGERLLAEGFLVEGPTWAPNGRVLSFFRESPSDERGRGQVVRLYTIDLTGV 423 Query: 427 NETLINTPAYASDPQWVGFM 446 NE ++ TP SDP W + Sbjct: 424 NERVLLTPIDGSDPAWSPLI 443 >gi|197106553|ref|YP_002131930.1| periplasmic component of the Tol biopolymer transport system [Phenylobacterium zucineum HLK1] gi|196479973|gb|ACG79501.1| periplasmic component of the Tol biopolymer transport system [Phenylobacterium zucineum HLK1] Length = 430 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 180/433 (41%), Positives = 258/433 (59%), Gaps = 8/433 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + L L + G A ++V N + P+ IA F G +++V+S +LQ Sbjct: 6 LMLALACLFAAGLTVQPARAEIEVNVNRGDVQPLPIAVPAFGGQQ--GADIAQVISANLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F + +F ++ N PRF DW + AQ LV G+V EG RLRV+FRLWDV Sbjct: 64 RSGLFQPLDPAAFIERDVNIAVQPRFADWKQINAQALVNGQVTVEG-GRLRVDFRLWDVF 122 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 +Q++G +F SSP +WR++AH ISD +Y+ +TGEKG F++R++FV+ES G L Sbjct: 123 AEQQLLGLQFTSSPENWRRVAHKISDAVYERLTGEKGYFDTRVVFVAESGPRGKRVKRLA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DGAN YLT I+ PRFS N Q++ Y + D ++L + R + +G Sbjct: 183 IMDQDGANPSYLTDG-SYIVMTPRFSSNSQEITYMSLR-PDGSSIWLFNLETGR-RESLG 239 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF+ M+ APRFS +G R SV++ DIY + L S ++ RLT+ I+ S S+SPD Sbjct: 240 NFQGMVFAPRFSPDGGRVAFSVERGGNSDIYVMSLSSRSSTRLTSDPSIDTSPSFSPDGQ 299 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVF SDR G QLYVM ++GS+ +RIS + Y PVWSP G+ IAFTK +G +F IG Sbjct: 300 RIVFNSDRSGSAQLYVMGADGSNPRRISF-GQGRYTTPVWSPTGEFIAFTKQTGGQFHIG 358 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM+ DGS ERLL + PTW+P+GR L+FSR+ G +L+S+D+ GR + P Sbjct: 359 VMRADGSDERLLTSSYLDEGPTWAPNGRVLMFSRETPG-GAPRLWSVDVTGRVLQPMPYP 417 Query: 435 AYASDPQWVGFMD 447 SDP W ++ Sbjct: 418 GSGSDPAWSPLLN 430 >gi|71083302|ref|YP_266021.1| translocation protein TolB [Candidatus Pelagibacter ubique HTCC1062] gi|91762268|ref|ZP_01264233.1| translocation protein TolB precursor [Candidatus Pelagibacter ubique HTCC1002] gi|118574591|sp|Q4FN21|TOLB_PELUB RecName: Full=Protein tolB; Flags: Precursor gi|71062415|gb|AAZ21418.1| tolB protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718070|gb|EAS84720.1| translocation protein TolB precursor [Candidatus Pelagibacter ubique HTCC1002] Length = 446 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 182/433 (42%), Positives = 262/433 (60%), Gaps = 23/433 (5%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFV-------------SIDELGGKVSEVVSKDLQRSDV 78 A ++V N +P+ +A + ++LG ++S VV +L++S + Sbjct: 17 AFALIEVDITRGNLNPLPVAVSPLSIDNKSKENFKKILKQEDLGSEISIVVENNLRQSGL 76 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 FN + +++F Q+ + PRF+DWN + AQ LVTG+V ++LRVEFRLWDV K+ Sbjct: 77 FNPLDKNAFLQEPDVANLKPRFEDWNLIKAQALVTGKVTFV-DEKLRVEFRLWDVLAGKE 135 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 ++ F + P++WR++ H I+D +Y+ +TGEKG F++RI++VSE L +MD+ Sbjct: 136 MMALAFTTVPSNWRRVGHIITDKVYERLTGEKGYFDTRIIYVSEEGPKTKRIKKLAIMDQ 195 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N +YLT + ++ PRFSP Q V Y +Y ++ RVYL+D + +G+F Sbjct: 196 DGFNNKYLTLGNE-LVLTPRFSPTNQMVTYLSY-FRNLPRVYLLDIETGMQ-EVVGDFPG 252 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M APRFS +GK+ ++S KD DIY++DL++ ER+TN I+ S SYSPD +I F Sbjct: 253 MTFAPRFSPDGKKIIMSFAKDGNSDIYTMDLENRIVERITNHPSIDTSPSYSPDGKKITF 312 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G +Q+YVM SNG + KRIS Y PVWSP+GDLIAFTK KF IGVM+ Sbjct: 313 NSDRSGYQQIYVMDSNGKNVKRISF-GNGLYGTPVWSPRGDLIAFTKLHKGKFYIGVMRT 371 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSR-----KKDGDTGSKLYSIDLNGRNETLINT 433 DG+ ERLL E+ +AP+WSP+GR LIF R K +KL+SIDL G NE ++ T Sbjct: 372 DGTGERLLTENFYQEAPSWSPNGRVLIFYRETKTNSKGEGFSAKLWSIDLTGYNEKMVET 431 Query: 434 PAYASDPQWVGFM 446 ASDP W + Sbjct: 432 ETDASDPSWSSLL 444 >gi|167648382|ref|YP_001686045.1| translocation protein TolB [Caulobacter sp. K31] gi|167350812|gb|ABZ73547.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter sp. K31] Length = 441 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 168/424 (39%), Positives = 247/424 (58%), Gaps = 6/424 (1%) Query: 24 IGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS 83 + PT A ++V + P+ +A F G +++V+S +L+RS +F ++ Sbjct: 24 MAALAPTVARAQIEVDIDKGAVKPLPVAIPAFSGGGR-GADIAQVISGNLERSGLFQPLN 82 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK 143 + K+ + + PRF DW + GAQ L+ G+V LRV+FRLWD ++Q++G + Sbjct: 83 VANVADKLADVNVQPRFPDWQATGAQALINGQVTVGADGVLRVDFRLWDTFSQQQLLGLQ 142 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 F S+ +WR++AH ISD +Y+ +TGEKG F++R++FV+ES L +MD+DGAN Sbjct: 143 FTSTAENWRRVAHKISDAVYERLTGEKGYFDTRVVFVAESGGKLTRVKRLAIMDQDGANP 202 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 +YLT I+ PRFS Q++ Y +YL + R + IG F M+ AP Sbjct: 203 QYLTDG-SYIVMTPRFSSTSQEITYMALRPTGS-SIYLTNLETAR-TETIGKFPGMVFAP 259 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 RFS +G + SV+K DIY +DL+S + R+T I+ S S+SPD S+IVF SDR Sbjct: 260 RFSPDGGKVAFSVEKGGNSDIYVMDLRSRQSTRITTDPAIDTSPSFSPDGSKIVFNSDRG 319 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G+ QLY+M ++GS +RIS Y PVWSP+GD IAFTK +G +F IGVMK DG E Sbjct: 320 GQAQLYIMNADGSGVRRISYGG-GRYTTPVWSPRGDFIAFTKQTGGEFHIGVMKVDGGDE 378 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 RLL + PTW+P+GR L+FSR+ S+L+++D+ GR ASDP W Sbjct: 379 RLLTTSYLDEGPTWAPNGRVLMFSRE-GSSGNSRLWTVDITGRILRPAAYTGAASDPAWS 437 Query: 444 GFMD 447 +D Sbjct: 438 PLLD 441 >gi|188584485|ref|YP_001927930.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium populi BJ001] gi|179347983|gb|ACB83395.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium populi BJ001] Length = 446 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 175/441 (39%), Positives = 256/441 (58%), Gaps = 3/441 (0%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKV 65 F L + L ++ + T A +++ S + P+ IA F LG V Sbjct: 6 FTRRTLLPALTAALGVLALTLPAATPARAQLQLRIGSGAFQPMPIAVADFAGDASLGTLV 65 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S V++ +L+RS F + + F + + D+ P F+ W G Q LVTGRV ++ RL Sbjct: 66 SSVITNNLRRSGYFTPLEKGRFPENP-SFDAAPNFEAWKGAGVQALVTGRVGRDASGRLT 124 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V FRLWDV +QI G+++ + A+ R+ H +SD +Y +TG F+SR+ FV ES Sbjct: 125 VAFRLWDVASGQQITGQQYGTDVANARRTGHLVSDAVYTKVTGLGPWFDSRVAFVDESGP 184 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + L VMD+DGAN+R LT D + PR+SP Q +A+ T +V ++D Sbjct: 185 KENRRKRLMVMDQDGANVRALTGGGDVSVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLE 244 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + +GNF SM +PRFS +G+R ++SVQ+ DI +VDL S A +T L I+ Sbjct: 245 TGK-RQTVGNFASMSASPRFSPDGRRLVMSVQQGGNADIVTVDLGSKAQTPVTQGLAIDT 303 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SYSPD SQIVFESDR G +Q+YVM ++GS+ +R+S E S P WSP+GDLIAFT+ Sbjct: 304 SPSYSPDGSQIVFESDRGGSQQIYVMGADGSNPRRLSF-GEGSASQPAWSPRGDLIAFTR 362 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 FAI VMK DGS ER+L E + ++PT++P+G+ ++F R G G KLY +D+ G Sbjct: 363 QRKGGFAICVMKPDGSGERVLTEGFHNESPTFAPNGQYVMFFRDPGGQGGGKLYMVDITG 422 Query: 426 RNETLINTPAYASDPQWVGFM 446 + E + TP++ASDP W + Sbjct: 423 KVEQPVPTPSFASDPTWSPLL 443 >gi|240851219|ref|YP_002972622.1| translocation protein TolB [Bartonella grahamii as4aup] gi|240268342|gb|ACS51930.1| translocation protein TolB [Bartonella grahamii as4aup] Length = 441 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 186/443 (41%), Positives = 288/443 (65%), Gaps = 6/443 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSI-HAFVKVATNSANYSPVSIAFTKFVSIDELGGKV 65 + K+ ++ S +A +K +SA+++P+ IA T F+S D +G K+ Sbjct: 1 MMTITRHKVFAWFIVTCGLWLSSISSGYAQLKGTISSADFNPIPIAITDFISNDSIGLKI 60 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S VV+ DL+RS +F +++++F + I+NP+ P F W + AQ LVTG+V++E RLR Sbjct: 61 SAVVTADLERSGLFLPLNKENFLENISNPNKQPHFASWQKIKAQGLVTGQVMREIDGRLR 120 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V+FRLWDV ++Q+ G++F+++ WR++AH I+D+IY +TGE G F++RI+F+ E+ Sbjct: 121 VDFRLWDVFGQRQLKGRRFYTATERWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGP 180 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L +MD+DGAN+ Y++ + ++ PRFSP +Q++ Y Y+D + VYL Sbjct: 181 QNARIKRLAMMDQDGANLIYMSDGSE-LVLTPRFSPKRQEMTYMAYEDNQVPHVYLQQIE 239 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + + IG F +M +APRFSS+G++ ++S +Q D + ++Y++DL++ RLT T I+ Sbjct: 240 MGQ-RELIGTFNNMTIAPRFSSDGQKVIMSLLQNDGSANLYTMDLRTRTMTRLTTTSAID 298 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SASYSPD QIVF SDR GK Q+Y M ++GSD +RIS + E SY P+WSP+GD IAFT Sbjct: 299 TSASYSPDGKQIVFSSDRSGKPQIYKMNADGSDIQRISSN-EGSYSTPIWSPRGDYIAFT 357 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K +F+IGVM+ DG ER+L + + PTW+P+GR L+F RK G G K+Y+ID+ Sbjct: 358 KQLSGQFSIGVMRPDGQGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDIT 416 Query: 425 GRNETLINTPAYASDPQWVGFMD 447 GRNE + TP ASDP W ++ Sbjct: 417 GRNERQLPTPNDASDPAWSPLLN 439 >gi|163869131|ref|YP_001610370.1| translocation protein TolB [Bartonella tribocorum CIP 105476] gi|161018817|emb|CAK02375.1| TolB protein [Bartonella tribocorum CIP 105476] Length = 441 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 184/443 (41%), Positives = 289/443 (65%), Gaps = 6/443 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFP-TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKV 65 + ++ ++ +S++A +K +SA+++P+ IA T F+S D +G K+ Sbjct: 1 MMTITRHRVFTWFIVTCSLWLSSMSSVYAQLKGTISSADFNPIPIAITDFISNDSIGSKI 60 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 + VV+ DL+RS +F + +++F +KI+NP+ P F W + AQ LV G+V++E RLR Sbjct: 61 TAVVTADLERSGLFVPLDKENFFEKISNPNKQPHFASWQKIKAQGLVMGQVMREIDGRLR 120 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V+FRLWDV ++Q+ G++F+++ WR++AH I+D+IY +TGE G F++RI+F+ E+ Sbjct: 121 VDFRLWDVFGQRQLKGRRFYTATERWRRVAHMIADEIYSEMTGESGYFDTRIVFIDETGP 180 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L +MD+DGAN+ Y++ + ++ PRFSP +Q++ Y Y+D + VYL Sbjct: 181 QNARIKRLAMMDQDGANLIYMSDGSE-LVLTPRFSPKRQEMTYMAYEDNQVPHVYLQQIE 239 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + + IG F +M +APRFSS+G++ ++S +Q D + ++Y++DL++ RLT T I+ Sbjct: 240 MGQ-RELIGTFHNMTIAPRFSSDGQKVIMSLLQNDGSANLYTMDLRTRTMTRLTTTSAID 298 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SASYSPD QIVF SDR GK Q+Y M ++GSD +RIS + E SY P+WSP+GD IAFT Sbjct: 299 TSASYSPDGQQIVFSSDRSGKPQIYKMNADGSDIQRISSN-EGSYSTPIWSPRGDYIAFT 357 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K +F+IGVM+ DG ER+L + + PTW+P+GR L+F RK G G K+Y+ID+ Sbjct: 358 KQLSGQFSIGVMRPDGQGERILTTGFHNEGPTWAPNGRVLMFFRKNPG-MGPKIYTIDIT 416 Query: 425 GRNETLINTPAYASDPQWVGFMD 447 GRNE + TP ASDP W ++ Sbjct: 417 GRNERQLPTPNDASDPAWSPLLN 439 >gi|312115991|ref|YP_004013587.1| Tol-Pal system beta propeller repeat protein TolB [Rhodomicrobium vannielii ATCC 17100] gi|311221120|gb|ADP72488.1| Tol-Pal system beta propeller repeat protein TolB [Rhodomicrobium vannielii ATCC 17100] Length = 435 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 181/419 (43%), Positives = 261/419 (62%), Gaps = 6/419 (1%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 P+ A V+V + IA F D + + ++VV+ DLQRS +F + +F Sbjct: 21 PSLASAQVEVEIRRGQVRAIPIAVADFTG-DPVAAETAQVVTADLQRSGLFRPVPNSAFI 79 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 ++ N D+ PRFQDW L Q LV GRV G RLR E+RLWDV + I G++FF Sbjct: 80 ERGANVDTPPRFQDWKVLNIQALVVGRVTDAGDGRLRGEYRLWDVVTGRHIAGEQFFIPR 139 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R++AH I+D +Y+ +TGE+G F+SR++FV ES L +MD+DGAN+R LT Sbjct: 140 NASRRLAHIIADAVYERLTGERGYFDSRVVFVDESGPKNQRVKRLAIMDQDGANLRLLTQ 199 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 R+ ++ PRF P Q++ Y Y + + RV L + + + +G+F +M APRFS Sbjct: 200 GRE-LVLTPRFHPLSQEITYTAYRNGEP-RVMLRNIMTGQE-EVLGDFPNMSFAPRFSPQ 256 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G R ++S+Q+ + +I+ +D++S RLT T I+ + YSPD QIVFESDREGK+QL Sbjct: 257 GDRVVMSLQEGGSSNIFELDVRSRRMMRLTQTNAIDTAPCYSPDGRQIVFESDREGKQQL 316 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 YVM ++GS Q+RI+ + Y PVWSP+GDLIAFTK FAIGV++ DGS ER+L E Sbjct: 317 YVMNADGSGQRRITF-GDGRYSTPVWSPRGDLIAFTKQVPGGFAIGVIRPDGSGERVLTE 375 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + PTWSP+GR ++F R+ G + G+KL+SIDL G NE + TP++ SDP W + Sbjct: 376 GYHNEGPTWSPNGRVILFFRESGGANGGAKLFSIDLTGYNERQMPTPSFGSDPAWSPLL 434 >gi|16127460|ref|NP_422024.1| translocation protein TolB [Caulobacter crescentus CB15] gi|32699717|sp|Q9A3H4|TOLB_CAUCR RecName: Full=Protein tolB; Flags: Precursor gi|13424914|gb|AAK25192.1| tolB protein [Caulobacter crescentus CB15] Length = 432 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 169/423 (39%), Positives = 249/423 (58%), Gaps = 6/423 (1%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 G F T A ++V N+ P+ IA F G ++++V++ +L+RS +F ++ Sbjct: 16 GAAFVTPAAAQIEVDINAGAVKPLPIAIPVFSGSTR-GAEIAQVITGNLERSGLFQPLNV 74 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 K+ + + PRF DW S GAQ L+ G+V LRV+FRLWDV ++Q++G +F Sbjct: 75 AGVPDKLADVNVQPRFPDWQSTGAQALINGQVTVGADGGLRVDFRLWDVFSQQQLLGLQF 134 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S+P +WR++AH ISD +Y+ +TGEKG F++R+ FV+ES L +MD+DGAN + Sbjct: 135 SSTPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQ 194 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 YLT I+ PRFS Q++ Y +YL++ R +G F M+ APR Sbjct: 195 YLTDG-SYIVMTPRFSSTSQELTYMALRPTGS-SIYLLNLETSRQET-VGKFPGMVFAPR 251 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + SV+++ DIY +DL+S AT R+T I+ S S+SPD ++IVF SDR G Sbjct: 252 FSPDGSKVAFSVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGG 311 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + Q+YVM ++GS +RIS Y PVWSP+GD IAFTK +G +F IGVM+ DG ER Sbjct: 312 QAQIYVMNTDGSGVRRISYGG-GRYTTPVWSPRGDFIAFTKQTGGEFHIGVMRADGGDER 370 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 LL + PTW+P+GR L+F R+ +L+++D+ GR ASDP W Sbjct: 371 LLTTSYLDEGPTWAPNGRVLMFFRE-GPSGNPRLWTVDITGRILRPAAYSGSASDPAWSP 429 Query: 445 FMD 447 +D Sbjct: 430 LLD 432 >gi|84687705|ref|ZP_01015578.1| translocation protein TolB precursor [Maritimibacter alkaliphilus HTCC2654] gi|84664288|gb|EAQ10779.1| translocation protein TolB precursor [Rhodobacterales bacterium HTCC2654] Length = 444 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 160/448 (35%), Positives = 257/448 (57%), Gaps = 12/448 (2%) Query: 8 AEELNMKINLCLLLV--LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SIDEL 61 +LN+ + L L+ + + T+ +++ P+ A F S + Sbjct: 1 MTKLNLLVALVLMTLAPVFSATTATAQQGPLRIEITEGVIEPLPFAVPTFQAETGSAGAI 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 ++S V++ DL + +F I +F +TN S ++ DW ++ AQ L+TG V ++G Sbjct: 61 AEEISRVIAADLSGTGLFREIPSSAFIANVTNFASPIQYADWKAVNAQALITGAVSEQG- 119 Query: 122 DRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 ++ V+FR++DV ++ G ++ + R+IAH ++D +Y ITGE G F+SR++FV Sbjct: 120 GQINVKFRVYDVFSGTELGQGLQYTGTTDGVRRIAHKVADTVYSRITGETGYFDSRVVFV 179 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SES + L VMD DGAN++YLT S + +L PRFS + +V Y +Y+ ++Y Sbjct: 180 SESGPKNARRKQLAVMDYDGANVKYLTDS-ESLLLAPRFSKSGDRVLYTSYETGQP-QIY 237 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 +++ + +M +PRFS +G + S+++ +IY +DL +LTN+ Sbjct: 238 VLEVGSAQRRALGTGGGNMAFSPRFSPDGNGLIFSLEQGGNSEIYRMDLNGGGLVQLTNS 297 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ + S+SPD S+IVFESDR G +Q+YVM +NG + +RIS Y PVWSP+GDL Sbjct: 298 PAIDTAPSFSPDGSRIVFESDRSGTQQIYVMSANGGEPQRISF-GPGRYGTPVWSPRGDL 356 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLY 419 IAFTK + +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G + LY Sbjct: 357 IAFTKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRESQGAEGAPGLY 416 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 S+D++GRN + TP ASDP W + Sbjct: 417 SVDISGRNLRRVPTPDAASDPSWGPLQN 444 >gi|209965095|ref|YP_002298010.1| translocation protein TolB [Rhodospirillum centenum SW] gi|209958561|gb|ACI99197.1| protein TolB precursor [Rhodospirillum centenum SW] Length = 451 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 168/427 (39%), Positives = 257/427 (60%), Gaps = 14/427 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQRSDVFNLISQD 85 + +++ P+ IA T F+ + ++S V++ +L+RS +F + Sbjct: 28 AASAQELRLDITKGVTEPMPIAITTFLGGTPQEQTVARQISSVITANLERSGLFQPLDPA 87 Query: 86 SFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 F Q + PRF DW +GAQ LV G V + RLRV+FRL+DV KQ+ G + Sbjct: 88 RFIQTPEQLASAPPRFADWRLIGAQALVAGGVQAQPDGRLRVQFRLFDVVYGKQLTGLAY 147 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 F+ WR++AH ISD IY+ +TGE+G F++R+++++ES + L +MD+DG N R Sbjct: 148 FTQAEGWRRVAHIISDAIYKRLTGEEGYFDTRVVYIAESGPANQRVKRLAIMDQDGENNR 207 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 +LT R ++ PRFSP Q++ Y +Y + RVYL + R + +G+F M APR Sbjct: 208 FLTDGR-VLVLTPRFSPTAQEITYLSYFNNKP-RVYLFNIDTGRQ-ELLGDFPGMTFAPR 264 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + ++S+ + DIY++DL++ RLT+ I+ + SYSPD QIVFESDR G Sbjct: 265 FSPDGNQVIMSLAQSGNTDIYTLDLRTRRQTRLTDHPGIDTAPSYSPDGKQIVFESDRGG 324 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 +QLY M ++GS+ KRI+ + Y PVWSP+GDLIAFT+ +G +F IGV++ DG+ ER Sbjct: 325 TQQLYTMNADGSNVKRITF-GQGRYATPVWSPRGDLIAFTRLNGGRFYIGVIRPDGTGER 383 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-----SKLYSIDLNGRNETLINTPAYASD 439 LL E +++ PTW+P+GR L++ ++K G S+L++IDL G NE + T ASD Sbjct: 384 LLTEAFHVEGPTWAPNGRVLMYFKEKPVGAGARQRQSRLFTIDLTGVNERQMVTATDASD 443 Query: 440 PQWVGFM 446 P W + Sbjct: 444 PAWSPLI 450 >gi|149202852|ref|ZP_01879823.1| translocation protein TolB precursor [Roseovarius sp. TM1035] gi|149143398|gb|EDM31434.1| translocation protein TolB precursor [Roseovarius sp. TM1035] Length = 441 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 166/443 (37%), Positives = 252/443 (56%), Gaps = 9/443 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVS 66 + + L L L + +++ P+ A FVS ELG ++ Sbjct: 2 MRFMMTLLAALTLWAMPVLAQGNGPLRIEITEGVIEPLPFAVPDFVSDSAAGQELGRNIA 61 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V++ DL + +F I + +IT+ +S ++ DW ++ AQ L+TG V +G R+ Sbjct: 62 SVIAADLNGTGLFRQIPSSAHISRITSFESPVQYADWRAINAQALITGAVSTDGAGRIIA 121 Query: 127 EFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 +FR++DV +++ G++ + WR+IAH ++D +Y ITGE G F+SR++FV+ES Sbjct: 122 KFRIYDVFSGQELGAGQQLVGTQDGWRRIAHKVADQVYSRITGEGGYFDSRVVFVAESGP 181 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ R+Y++D Sbjct: 182 KDQRAKRLGIMDYDGANVQYLTDSTS-IVLAPRFSPTGDRVLYTSYETG-FPRIYVLDVA 239 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + +M APRF+ NG+ + S+ + D+Y++D+ S A+ RLT I Sbjct: 240 NVGRRELPTQDATMSFAPRFAPNGRTVVYSLTQGGNTDLYTMDIGSGASTRLTTAPSIET 299 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + SYSPD SQIVFESDR G QLY+M + G + +RIS E Y PVWSP+GDL+AFTK Sbjct: 300 APSYSPDGSQIVFESDRSGTPQLYIMSAGGGEARRISF-GEGRYGTPVWSPRGDLVAFTK 358 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLN 424 S +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G+ G + LYS+D+ Sbjct: 359 QSKGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRETQGEQGQASLYSVDIT 418 Query: 425 GRNETLINTPAYASDPQWVGFMD 447 GRN + T ASDP W + Sbjct: 419 GRNLKQVPTNTGASDPSWSPLQN 441 >gi|83950088|ref|ZP_00958821.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM] gi|83837987|gb|EAP77283.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM] Length = 440 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 173/442 (39%), Positives = 254/442 (57%), Gaps = 12/442 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSI----DELGGKV 65 M + L L + F ++ A +++ P+ A FV +EL + Sbjct: 1 MYRMMTLALACLVAFQAPALQAQDGPLRLEIKEGVIEPMPFAVPDFVPESGAAEELSRNI 60 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 + VV+ DL + +F ISQD+F ++T+ S +F DW ++ AQ LVTG V +G R+ Sbjct: 61 ARVVAADLSGTGLFREISQDAFISRVTSFSSPVQFADWKAINAQALVTGAVAVDGTGRVT 120 Query: 126 VEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 +FR+WDV +++ G +F + WR+IAH ++D +Y ITGE G F+SR++FVSE+ Sbjct: 121 AKFRVWDVFAGQELGSGLQFVGTVDGWRRIAHKVADQVYSRITGEGGYFDSRVVFVSETG 180 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ RVY++D Sbjct: 181 PKDNRAKRLSIMDYDGANLKYLTDSSS-IVLAPRFSPTGDRVLYTSYESG-FPRVYVLDV 238 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 +M APRFS +G+ + S+ + DIY++D+ + A++RLTN I Sbjct: 239 ASVSRRLLESQDGTMSFAPRFSPDGRTVVYSLIQGGNTDIYTMDIATGASQRLTNAPSIE 298 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD QIVFESDR G Q+YVM + G + +RIS Y PVWSP+GD IAFT Sbjct: 299 TAPSFSPDGRQIVFESDRSGTNQIYVMNAQGGEARRIS-GGTGQYGTPVWSPRGDYIAFT 357 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDL 423 K S +F IGVM+ +G +ERLL + PTWSP+GR ++F+R+ G G S+L+S+D+ Sbjct: 358 KQSKGRFHIGVMRVNGEEERLLTASFLDEGPTWSPNGRVIMFTRETQGAQGQSRLWSVDI 417 Query: 424 NGRNETLINTPAYASDPQWVGF 445 GRN + TP ASDP W Sbjct: 418 TGRNLRQVQTPGGASDPSWSPL 439 >gi|262277490|ref|ZP_06055283.1| Tol-Pal system beta propeller repeat protein TolB [alpha proteobacterium HIMB114] gi|262224593|gb|EEY75052.1| Tol-Pal system beta propeller repeat protein TolB [alpha proteobacterium HIMB114] Length = 445 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 182/444 (40%), Positives = 273/444 (61%), Gaps = 20/444 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKV---------SE 67 +L+ L F + A V + N P+ A + F + ++ K+ + Sbjct: 4 ILVTLFLILFTSKSFAVVTIDITRGNLEPLPTAISNFYIDNPEKFSEKIKSLKLEENLPK 63 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ +L RS +F ++ S+ Q+ PRF+DW + AQ++V+G++ + K RLRVE Sbjct: 64 VIKGNLMRSGLFYVLDNKSYIQQPKLSHLKPRFEDWRLIKAQIMVSGKLRIDEKGRLRVE 123 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWDV K+I G F++P+SWR+IAH ISD IYQ +TGE+G F++RI++V+ES Sbjct: 124 FRLWDVVSAKEIEGLALFATPSSWRRIAHIISDKIYQRLTGEEGYFDTRIIYVAESGPKT 183 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L +MD+DGAN ++LT + ++ PRFSPN + V Y +Y +++ RVYL++ Sbjct: 184 QREKKLAIMDQDGANNKFLTLGNE-LVLTPRFSPNGKMVTYMSY-FKNLPRVYLLNIETG 241 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + +G+F M APRFS +G++ ++S +D DIY++D++S E++T+ I+ S Sbjct: 242 IQ-EVVGDFPGMTFAPRFSPDGRKIIMSFARDGNSDIYTMDIESRRVEQITSNPAIDTSP 300 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD IVF SDR G +Q+Y M+S+G KRIS+ K Y PVWSP+GDLIAFTK Sbjct: 301 SFSPDGRFIVFNSDRSGFQQIYTMRSDGRGVKRISRGK-GLYGTPVWSPRGDLIAFTKIH 359 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-----DTGSKLYSID 422 KF IGVM+ DG+ ERLL ++ +AP+WSP+GR LIF R+ G + +KL++ID Sbjct: 360 KGKFYIGVMRTDGTGERLLTQNFYQEAPSWSPNGRVLIFYRETAGGKKGQGSSAKLWAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + G NE I TP ASDP W G + Sbjct: 420 ITGYNEVKIKTPTDASDPSWSGLL 443 >gi|330814394|ref|YP_004358633.1| TolB protein precursor [Candidatus Pelagibacter sp. IMCC9063] gi|327487489|gb|AEA81894.1| TolB protein precursor [Candidatus Pelagibacter sp. IMCC9063] Length = 448 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 199/449 (44%), Positives = 277/449 (61%), Gaps = 23/449 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-----------ELGGK 64 LCL+ + I FF S A VK+ N P+ A +KF + EL K Sbjct: 3 KLCLIFISI-LFFNHSAFAVVKIDITRGNLEPLPTAISKFYVDNPSKFSPELKALELDKK 61 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +SEV+S +L+RS +F++I S+ Q + P FQDW + AQ++++G+++ + K RL Sbjct: 62 ISEVISNNLKRSGLFSIIDPKSYIQSPRIAHAKPTFQDWALIKAQIMISGKLVIDEKKRL 121 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 RVEFRLWDV + K++ G F++P SWR+IAH ISD IY+ +TGE G F++RI++V+ES Sbjct: 122 RVEFRLWDVVNAKEMEGLALFATPNSWRRIAHIISDKIYERMTGELGYFDTRIIYVAESG 181 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L +MD+DGAN +YLT + ++ PRF+P Q V Y +Y +++ RVYL++ Sbjct: 182 PKDQRIKKLAIMDQDGANNKYLTLGNE-LVLTPRFNPASQMVTYMSY-FKNLPRVYLLNI 239 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + +G+F M APRFS +GK+ ++S KD DIYS+D++S E+LT+ I+ Sbjct: 240 ETGMQ-ELVGDFPGMTFAPRFSPDGKKIIMSFAKDGNSDIYSMDIKSRVVEQLTSHPSID 298 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S SYS D SQI F SDR G +Q+YVM+S+GS KRIS + Y PVWSP+GDLIAFT Sbjct: 299 TSPSYSSDGSQITFNSDRSGAQQIYVMKSDGSKAKRISF-GQGLYGTPVWSPRGDLIAFT 357 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK-------DGDTGSK 417 K KF IGVM+ DG+ ERLL E+ +AP+WSP+GR LIF R+ T S Sbjct: 358 KIYRGKFYIGVMRSDGTGERLLTENYYQEAPSWSPNGRVLIFYRESRTKKSKTGFSTSSS 417 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGFM 446 L+SIDL G NE I T ASDP W G + Sbjct: 418 LWSIDLTGYNERKIKTLTDASDPAWSGLL 446 >gi|260431108|ref|ZP_05785079.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter lacuscaerulensis ITI-1157] gi|260414936|gb|EEX08195.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter lacuscaerulensis ITI-1157] Length = 439 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 169/441 (38%), Positives = 253/441 (57%), Gaps = 11/441 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIH-AFVKVATNSANYSPVSIAFTKFVSIDEL----GGKVSE 67 M++ LL+ L P S +++ + P+ A FV +S Sbjct: 2 MRLLTSLLVGLTLLSAPASAQTGPLRLELDQGIIEPMPFAVPNFVPDTPAAAQYPTDISR 61 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL + +F I+ ++F ++ + ++ +F DW ++ A LVTG V G + L V Sbjct: 62 VIAADLTGTGLFREIAPEAFISRVNSFEAPIQFADWKAINADALVTGAVNLSG-NTLTVR 120 Query: 128 FRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FR+WDV +++ G +F WR++AH ++D +Y ITGE G F+SR+ FVSES Sbjct: 121 FRVWDVFSGQELGNGLQFSGPTDGWRRMAHKVADQVYSRITGEGGYFDSRVAFVSESGPK 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L +MD DGAN++YLT S I+ PRFSP ++ Y +Y+ R+YL+D Sbjct: 181 DQRRKRLAIMDYDGANVQYLTDS-AAIVLAPRFSPAGDRLLYTSYESGRP-RIYLLDVGR 238 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +M +PRFS +G+ + S+ + D++ +DL S + RLTNT I + Sbjct: 239 VKKQELKTQDGTMSFSPRFSPDGRSIVYSLTQGGNTDLWKMDLASGQSVRLTNTPAIETA 298 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SY+PD S+IVFESDR G QLYVM +NG + RIS + Y PVWSP+GDLIAFTK Sbjct: 299 PSYAPDGSRIVFESDRSGTPQLYVMPANGGEATRISF-GQGRYGTPVWSPRGDLIAFTKQ 357 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNG 425 + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G S LYS+D++G Sbjct: 358 NKGRFHIGVMRVDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRSSLYSVDISG 417 Query: 426 RNETLINTPAYASDPQWVGFM 446 RN + TP SDP W + Sbjct: 418 RNLRPVRTPDGGSDPSWGPLL 438 >gi|149915620|ref|ZP_01904146.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b] gi|149810512|gb|EDM70355.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b] Length = 440 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 170/442 (38%), Positives = 254/442 (57%), Gaps = 10/442 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIH-AFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSE 67 M+ L LL VL+ P + +++ P+ A FVS E G +++E Sbjct: 2 MRYILSLLTVLMLWSLPATAQTGPLRIEITEGVIEPLPFAAPDFVSDSTTGAEFGRRIAE 61 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL + +F I ++F ++T+ S ++ DW ++ AQ LVTG V + +L V Sbjct: 62 VIAADLTGTGLFREIQPEAFISRVTSFSSPVQYADWKAINAQALVTGAVSVDAGGQLVVR 121 Query: 128 FRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRL+DV +++ G + + WR+IAH ++D IY ITGE F+SR+++V+E+ Sbjct: 122 FRLYDVFAGQELGQGLQLVGTQDGWRRIAHKVADQIYSRITGEAPYFDSRVVYVAETGPK 181 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD DGAN+ YLT S I+ PRFSP+ ++V Y +Y+ R+Y++ Sbjct: 182 DQRIKRLAIMDYDGANVSYLTDSAS-IVLAPRFSPDGRQVLYTSYESG-FPRIYVLQVGS 239 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +M APRF+ +G+R + S+ D+Y +D+ S + RLTN I + Sbjct: 240 AQRRVLEQQDGTMSFAPRFAPDGRRVVYSLSSGGNTDLYMMDIGSGTSTRLTNAPSIETA 299 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S+IVFESDR G QLY+M S G + +RIS + Y PVWSP+GDLIAFTK Sbjct: 300 PSFSPDGSRIVFESDRSGSPQLYIMPSAGGEAQRISF-GQGRYGTPVWSPRGDLIAFTKQ 358 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDLNG 425 S +F IGV++ DGS+ERLL + PTWSP+GR ++F+R+ G GS LYS+D++G Sbjct: 359 SKGRFHIGVIRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGAQGSASLYSVDISG 418 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RN + T A SDP W D Sbjct: 419 RNLRKVPTEAGGSDPSWSPLQD 440 >gi|159043660|ref|YP_001532454.1| translocation protein TolB [Dinoroseobacter shibae DFL 12] gi|189035981|sp|A8LHQ6|TOLB_DINSH RecName: Full=Protein tolB; Flags: Precursor gi|157911420|gb|ABV92853.1| Tol-Pal system beta propeller repeat TolB [Dinoroseobacter shibae DFL 12] Length = 446 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 171/447 (38%), Positives = 245/447 (54%), Gaps = 13/447 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF-----VKVATNSANYSPVSIAFTKFVSI----DEL 61 + L + L F A +++ P+ IA F++ + Sbjct: 1 MKRAFLSALSVGLAALFLTGPAQAQGNPGPLRIEITEGVIEPLPIAVPPFLAETPAASQF 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 +++VV+ DL+ S +F I +++F IT+ DS ++ DW ++ AQ LVTG V Sbjct: 61 ARDIAQVVADDLEGSGLFRAIPENAFISPITSFDSPVQYADWKAINAQALVTGSVSVASD 120 Query: 122 DRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 RL V+FRL+DV + G +F +S +SWR++ H ++D +Y ITGE G F+SR++FV Sbjct: 121 GRLVVKFRLFDVFSDAPLGKGLQFVASQSSWRRMGHKVADAVYSRITGEGGYFDSRVVFV 180 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 SE+ + L +MD DGAN+++LT S I+ PRFSP +V Y +Y Sbjct: 181 SETGPKNARQKRLAIMDYDGANVQFLTDS-SAIVLAPRFSPTGDRVLYTSYATGRPQITL 239 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L + M APRFS +G+ + S+ DIY DL S A RLT T Sbjct: 240 LDVNSVRSQGLGSAQGGEMSFAPRFSPDGRSVVFSLTNGGNSDIYRRDLSSGAQTRLTAT 299 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I + S+SPD QIVFESDR G +QLYVM + G + +RIS Y PVWSP+GDL Sbjct: 300 PAIETAPSFSPDGRQIVFESDRSGSQQLYVMSATGGEARRISF-GPGRYGTPVWSPRGDL 358 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLY 419 IAFTK + +F IGVM+ DGS+ERLL ++PTWSP+GR ++F+R+ G G LY Sbjct: 359 IAFTKQNQGRFHIGVMRTDGSEERLLTSSFLDESPTWSPNGRVIMFTRETSGAGGAPSLY 418 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFM 446 S+D++GRN + TP ASDP W + Sbjct: 419 SVDISGRNLRRVPTPGAASDPAWSPLL 445 >gi|170741556|ref|YP_001770211.1| beta-propeller repeat-containing to-pal system protein TolB [Methylobacterium sp. 4-46] gi|168195830|gb|ACA17777.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium sp. 4-46] Length = 442 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 173/431 (40%), Positives = 249/431 (57%), Gaps = 8/431 (1%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L LVL G P + ++V + + P+ IA F L VS +V+ +L+RS Sbjct: 17 LWLFLVLTG---PAAAQLNLRVG-SGGAFQPMPIAVADFAGDPSLAPLVSGIVANNLKRS 72 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F I + F + N D+ P F W GAQ LVTGRV ++ ++ EFRLWDV Sbjct: 73 GYFVPIDRARFPETP-NFDAAPNFAAWKEAGAQGLVTGRVTRDASGGVKAEFRLWDVLSG 131 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+IG+++ + R++ H ISD +Y ITG G F++R+ FV ES + L +M Sbjct: 132 QQMIGQQYAGGSGNSRRMGHLISDAVYTKITGIGGFFDTRVAFVDESGSKERRRKRLAIM 191 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN+RYLT S + + PR+SP Q + Y + RV +++ A + I Sbjct: 192 DQDGANVRYLT-SGEAAVVAPRYSPATQDITYMSQTTGQQPRVQVINLETG-ARQVIPTH 249 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +PRFS +G+R ++S Q IY +DL S A R+TN I+ S S+SPD +I Sbjct: 250 AEMSTSPRFSPDGRRIVMSDQDGGNASIYVMDLASKAQTRITNANAIDTSPSFSPDGREI 309 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VFESDR G++Q+YVM ++GS+ +RIS + S P WSP+GD IAFT+ FAI +M Sbjct: 310 VFESDRGGQQQIYVMGADGSNPRRISF-GDGSASQPAWSPRGDYIAFTRQRRGSFAICIM 368 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 K DGS ER+L E + + PTW+P+G+ ++F R G G KLY +D+ GR E + TP+Y Sbjct: 369 KPDGSGERVLTEGFHNEGPTWAPNGQYVMFFRDPGGQAGGKLYMVDVTGRVEQPVPTPSY 428 Query: 437 ASDPQWVGFMD 447 ASDP W +D Sbjct: 429 ASDPTWSPLLD 439 >gi|108755186|emb|CAK32578.1| periplasmic component of the Tol biopolymer transport system [uncultured organism] Length = 449 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 182/440 (41%), Positives = 264/440 (60%), Gaps = 13/440 (2%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSK 71 + +L V+ S A +++ P+ IA T F+ G ++ VV+ Sbjct: 13 WIPILAVIFVLGGSWSASAELRIDITRGTVEPLPIAVTDFLGTAADETRFGRDIASVVAA 72 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+RS +F I +F Q T ++PRF DW + AQ LV GR RLRVEFRLW Sbjct: 73 DLERSGLFLPIDSRAFIQTGTALSTLPRFADWRVINAQALVQGRTQIVEDGRLRVEFRLW 132 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV +Q++G ++ ++P WR++AH I+D I++ +TGE G F++RI++++E Sbjct: 133 DVFAEQQMVGFEYHTAPNGWRRVAHIIADAIFKRVTGEDGYFDTRIVYIAERGPQDRRIK 192 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +MD+DG N R+LT + ++ PRFSP Q++ Y +Y + RVY+ + R + Sbjct: 193 RLAIMDQDGENHRFLTDG-NTLVLTPRFSPTLQEIIYLSY-YSGVPRVYIFNIDTGRE-E 249 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +G+F M APRFS++GK ++S+ KD +IY++DL + A +RLT I+ S S+ Sbjct: 250 IVGDFPGMTFAPRFSADGKAVIMSMAKDGNSEIYTLDLSTRAVQRLTFHSAIDTSPSFDA 309 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +S ++VF SDR G +QLYVM +GS+ +RIS K Y PVWSP+GDLIAFTK +F Sbjct: 310 NSGKVVFNSDRGGTQQLYVMDGDGSNVRRISFGK-GRYATPVWSPRGDLIAFTKIHKGRF 368 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGDTGSKLYSIDLNGR 426 IGVM+ DGS+ERLL ED ++APTW+P+GR L+F R+ K G S+LYSIDL G Sbjct: 369 FIGVMRTDGSEERLLAEDFLVEAPTWAPNGRVLMFFRQEPSDAKGGGGRSRLYSIDLTGY 428 Query: 427 NETLINTPAYASDPQWVGFM 446 NE I TP ASDP W + Sbjct: 429 NEREIITPLDASDPAWSPLI 448 >gi|110679376|ref|YP_682383.1| translocation protein TolB [Roseobacter denitrificans OCh 114] gi|118574597|sp|Q167Z6|TOLB_ROSDO RecName: Full=Protein tolB; Flags: Precursor gi|109455492|gb|ABG31697.1| TolB protein, putative [Roseobacter denitrificans OCh 114] Length = 443 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 160/445 (35%), Positives = 259/445 (58%), Gaps = 14/445 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF----VKVATNSANYSPVSIAFTKFVSID----ELG 62 ++ +I + ++ + F + A +++ P+ A F + ++ Sbjct: 1 MSFQIRVFTAILAVLSLFTAPVLAQNSGPLRIEITEGVIEPLPFALPVFEAETADAADVA 60 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 ++++V++ DL + +F I D+F +++ + ++ DW ++ AQ L+TG V +G + Sbjct: 61 AQITQVIAADLTGTGLFRQIEPDAFISTVSSFAAPIQYADWKAINAQALITGAVAVQG-N 119 Query: 123 RLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 +L V+FRL+DV ++ G +F ++P WR++AH ++D +Y ITGE G F+SR+++VS Sbjct: 120 QLNVKFRLYDVFSGAEMGDGLQFSATPDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVS 179 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E+ + L +MD DGAN++YLT S I+ PRFSP+ Q++ Y +Y+ R+Y+ Sbjct: 180 ETGTKDARQKRLAIMDYDGANVKYLTDSSS-IVLAPRFSPDGQRILYTSYETG-FPRIYV 237 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +D + +M APRF+ +G+ + S+ + DIY +++ + RLT+ Sbjct: 238 LDVTSLQRRGLESQEGTMSFAPRFAPDGQTIVFSLSQGGNTDIYRMNVNGGSATRLTSAP 297 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I + SYSPD +QIVFESDR G +QLYVM +NG + +RIS Y PVWSP+GDL+ Sbjct: 298 SIETAPSYSPDGTQIVFESDRSGSQQLYVMPANGGEARRISF-GPGRYGTPVWSPRGDLV 356 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYS 420 AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++FSR+ G G LYS Sbjct: 357 AFTKQNAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRATLYS 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGF 445 +D+ GRN + TP SDP W Sbjct: 417 VDITGRNLRPVRTPEGGSDPSWSPL 441 >gi|163733521|ref|ZP_02140964.1| translocation protein TolB precursor [Roseobacter litoralis Och 149] gi|161393309|gb|EDQ17635.1| translocation protein TolB precursor [Roseobacter litoralis Och 149] Length = 443 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 161/445 (36%), Positives = 254/445 (57%), Gaps = 14/445 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF----VKVATNSANYSPVSIAFTKFVSIDE----LG 62 ++ +I + ++ + F A +++ P+ A F + + Sbjct: 1 MSFQIRVFTAILAVLSLFTAPALAQNSGPLRIEITEGVIEPLPFALPVFEAETADATGVA 60 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 +++EV+S DL + +F I +F +++ + ++ DW ++ AQ L+TG V +G + Sbjct: 61 AQITEVISADLTGTGLFREIEPGAFISNVSSFAAPIQYADWKAINAQALITGAVAVQG-N 119 Query: 123 RLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 +L V+FRL+DV ++ G +F ++P WR++AH ++D +Y ITGE G F+SR+++VS Sbjct: 120 QLNVKFRLYDVFSGAEMGDGLQFSATPEGWRRMAHKVADAVYSRITGEGGYFDSRVVYVS 179 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E+ + L +MD DGAN++YLT S I+ PRFSP+ Q+V Y +Y+ R+Y+ Sbjct: 180 ETGTKDARQKRLAIMDYDGANVKYLTDSSS-IVLAPRFSPDGQRVLYTSYETG-FPRIYV 237 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +D + +M APRF+ +G+ + S+ + DIY +++ RLT Sbjct: 238 LDVTSVQRRALESQEGTMSFAPRFAPDGETIVFSLSQGGNTDIYRMNVNGGPATRLTAAP 297 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I + SYSPD +QIVFESDR G +QLYVM ++G + +RIS Y PVWSP+GDL+ Sbjct: 298 SIETAPSYSPDGTQIVFESDRSGSQQLYVMPASGGEARRISF-GPGRYGTPVWSPRGDLV 356 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYS 420 AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++FSR+ G G LYS Sbjct: 357 AFTKQNAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRATLYS 416 Query: 421 IDLNGRNETLINTPAYASDPQWVGF 445 +D+ GRN + TP SDP W Sbjct: 417 VDITGRNLRPVRTPEGGSDPSWSPL 441 >gi|254461647|ref|ZP_05075063.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales bacterium HTCC2083] gi|206678236|gb|EDZ42723.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae bacterium HTCC2083] Length = 439 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 164/441 (37%), Positives = 258/441 (58%), Gaps = 10/441 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVS 66 + +K + ++ + + + + +++ P+ A FV+ +E +++ Sbjct: 1 MTLKKLMAVVAICVLPLTAWAQNGPLRIEITEGVVEPMPFAAPNFVAESGAANEFAERLA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL + +F + +D++ +IT+ D+ ++ DW ++ AQ LVTG V G + L V Sbjct: 61 RVVVSDLAGTGLFREVPRDAYISQITSFDAPVQYVDWKAINAQALVTGAVNVSGSN-LSV 119 Query: 127 EFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 +FR++DV +I G +F + WR++AH ++D +Y ITGE+ F+SR+++VSE Sbjct: 120 KFRVYDVFSGTEIGSGLQFAGTTQGWRRMAHKVADQVYARITGEQPYFDSRVVYVSEQGP 179 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + L +MD DGAN++YLT + ++ PRFSP +V Y +Y+ R+Y+++ Sbjct: 180 KDKRRKRLAIMDYDGANVQYLT-GSEHLVLAPRFSPTGDRVLYTSYETG-FPRIYVLEVG 237 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + SM APRFS +G+ + S+ + DI+ +D+ S ++ RLT+ I Sbjct: 238 SVKRRVLESQDGSMSFAPRFSPDGRTVVYSLARGGNTDIFRMDVASGSSVRLTSGPAIET 297 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + SYSPD S+IVFESDR G +Q+Y+M +NG + KRIS K Y PVWSP+GDLIAFTK Sbjct: 298 APSYSPDGSRIVFESDRSGSQQIYIMSANGGEAKRISFGK-GRYGTPVWSPRGDLIAFTK 356 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDLN 424 S +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G GS LYS+D++ Sbjct: 357 QSKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGSAGSASLYSVDIS 416 Query: 425 GRNETLINTPAYASDPQWVGF 445 GRN I T ASDP W Sbjct: 417 GRNLKRIPTEGGASDPSWSPL 437 >gi|170747178|ref|YP_001753438.1| beta-propeller repeat-containing to-pal system protein TolB [Methylobacterium radiotolerans JCM 2831] gi|170653700|gb|ACB22755.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium radiotolerans JCM 2831] Length = 445 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 169/431 (39%), Positives = 251/431 (58%), Gaps = 5/431 (1%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L + L+ A +++ N+ P+ IA F L G VS VV+ DL+R Sbjct: 17 RLIAVFTLLTAVLAGPAQAQLQLRIGGGNFQPMPIAIADFGGDPSLAGLVSGVVTNDLRR 76 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + F ++ N D+ P F+ W + G Q LVTGRV++EG R++VEFRLWDV + Sbjct: 77 SGYFTPLDHARFPEQP-NFDAAPNFEKWRATGVQGLVTGRVVREG-GRVKVEFRLWDVTN 134 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 +Q+ G+++ + A+ R+ H ISD +Y ITG F+SRI FV E+ + L V Sbjct: 135 GQQMTGQQYGTDAANVRRTGHLISDGVYTKITGLGPWFDSRIAFVDETGPKENRRKRLMV 194 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN+R +T I+ PR+SP Q +A+ RV +++ + +GN Sbjct: 195 MDQDGANVRAITTGEMSIV-APRYSPATQDIAFMAQATGHQPRVQMINLETGS-RQALGN 252 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 SM +PRFS +G++ ++SVQ+ DI ++DL S A +TN + I+ S +YSPD SQ Sbjct: 253 VDSMSASPRFSPDGRKIVMSVQQGGNADIVTMDLASKAQRSITNGMAIDTSPTYSPDGSQ 312 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I FESDR G +Q+YVM ++GS+ RI+ S P +SP+GDLIA+T+ FAI V Sbjct: 313 IAFESDRGGSQQVYVMGADGSNPHRITF-GPGSASQPAFSPRGDLIAYTRQRNGGFAICV 371 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 K DGS ER+L E + + PT++P+G+ ++F R G G KL+ +D+ G+ E + TPA Sbjct: 372 SKPDGSGERVLTEGFHNEGPTFAPNGQYVLFFRDPGGQGGGKLFMVDITGKVEQPVPTPA 431 Query: 436 YASDPQWVGFM 446 YASDP W + Sbjct: 432 YASDPTWSPLL 442 >gi|315498693|ref|YP_004087497.1| tol-pal system beta propeller repeat protein tolb [Asticcacaulis excentricus CB 48] gi|315416705|gb|ADU13346.1| Tol-Pal system beta propeller repeat protein TolB [Asticcacaulis excentricus CB 48] Length = 436 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 169/432 (39%), Positives = 245/432 (56%), Gaps = 5/432 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + L L G A ++ +P+ IA S +LG K++ VV DL+ Sbjct: 9 VAFATFLALTGAPLAAFAQAPIRAEVAEGVIAPMPIAIDIESSGSDLGDKITRVVMADLE 68 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS F I ++F ++ D+ P F W ++ AQ L G +G+ RL+V+FRLWDV Sbjct: 69 RSGFFKPIDPNAFIEQSVGIDATPTFASWKTINAQALANGAARVDGEGRLQVDFRLWDVF 128 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ ++P +WR+IAH I+D IY+ +TGE+G F++RI+FV+ES G L Sbjct: 129 SEKQLLGQSVTATPENWRRIAHKIADAIYEKLTGEEGYFDTRIVFVAESGARGKRVKRLA 188 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD+DGAN YLT + PRFS + Q+VAY ED R+Y+ + R + +G Sbjct: 189 IMDQDGANPSYLTDG-SYKVMTPRFSADSQEVAYMVLR-EDSARIYVFNIETGRQ-EAVG 245 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + M+ APRFS +G + SV + DIY +DL++ AT R+T I+ S S+SPD S Sbjct: 246 QIKGMVFAPRFSPDGSKLAYSVAQGGNTDIYVMDLRTRATRRVTTDPGIDTSPSFSPDGS 305 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 IVF SDR G QLY M ++GS +RIS Y PV+SP+GD IAFTK SG +F+IG Sbjct: 306 TIVFNSDRGGSPQLYAMNADGSGVRRISFGG-GIYSTPVFSPKGDKIAFTKQSGGRFSIG 364 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 VM G E+LL + PTW+P+GR ++F R+ G L+ ++ +GR E + Sbjct: 365 VMDAGGGNEKLLTSSFLEEGPTWAPNGRYIMFFREPPGAL-PSLWMVEASGRIERQVPYS 423 Query: 435 AYASDPQWVGFM 446 ASDP W + Sbjct: 424 GGASDPAWSPRL 435 >gi|254564124|ref|YP_003071219.1| protein tolB [Methylobacterium extorquens DM4] gi|254271402|emb|CAX27415.1| protein tolB precursor [Methylobacterium extorquens DM4] Length = 446 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 169/414 (40%), Positives = 248/414 (59%), Gaps = 3/414 (0%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 A +++ S + P+ IA F LG V+ V++ +L+RS F + + F + Sbjct: 33 RAQLQLRIGSGAFQPMPIAVADFAGDASLGTLVASVITNNLRRSGYFTPLEKGRFPENP- 91 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + D+ P F+ W G Q LVTGRV ++ RL V FRLWDV +QI G+++ + A+ R Sbjct: 92 SFDAAPNFEAWKGAGVQALVTGRVGRDASGRLTVAFRLWDVASGQQITGQQYGTDVANAR 151 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 + H +SD +Y +TG F+SR+ FV ES + L VMD+DGAN+R LT D Sbjct: 152 RTGHLVSDAVYTKVTGLGPWFDSRVAFVDESGPKENRRKRLMVMDQDGANVRALTGGGDV 211 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + PR+SP Q +A+ T +V ++D + + +GNF SM +PRFS +G+R Sbjct: 212 SVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGK-RQTVGNFASMSASPRFSPDGRRL 270 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 ++SVQ+ DI +VDL S A +T L I+ S SY+PD SQIVFESDR G +Q+YVM Sbjct: 271 VMSVQQGGNADIVTVDLASKAQTPVTQGLAIDTSPSYAPDGSQIVFESDRGGSQQIYVMG 330 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 ++GS+ +R+S E S P WSP+GDLIAFT+ FAI VMK DGS ER+L E + Sbjct: 331 ADGSNPRRLSF-GEGSASQPAWSPRGDLIAFTRQRKGGFAICVMKPDGSGERVLTEGFHN 389 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 ++PT++P+G+ ++F R G G KLY +D+ G+ E + TP++ASDP W + Sbjct: 390 ESPTFAPNGQYVMFFRDPGGQGGGKLYMVDITGKVEQPVPTPSFASDPTWSPLL 443 >gi|126728386|ref|ZP_01744202.1| translocation protein TolB precursor [Sagittula stellata E-37] gi|126711351|gb|EBA10401.1| translocation protein TolB precursor [Sagittula stellata E-37] Length = 432 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 170/434 (39%), Positives = 254/434 (58%), Gaps = 9/434 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG----KVSEVVSKDL 73 + + G P +++ + P+ IA FV+ ++S VV++DL Sbjct: 1 MMAFAVFQGVLPAVAQEPLRLEIDRGIVEPMPIAIPSFVAETPAAQEYADQLSRVVAEDL 60 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + +F I +D+ +++ + +F DW ++ AQ LVTG V +G R+ V+FR WDV Sbjct: 61 VGTGLFREIPRDAHISRVSTFAAPVQFADWKAINAQALVTGAVSADGSGRVVVKFRAWDV 120 Query: 134 KDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 +++ G +F SS WR++AH ++D +Y +TGE F+SR++FVSE+ + Sbjct: 121 FAERELGEGMQFASSADGWRRLAHKVADQVYSRLTGESPYFDSRVVFVSETGPKDQRQKR 180 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD DGAN++YLT S I+ PRFSP +V Y +Y R++++D ++ Sbjct: 181 LAIMDYDGANVQYLTDSSS-IVLAPRFSPTGGQVLYTSYATG-FPRIHILDVGAVQSRIL 238 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 N M APRFS +G+ + S+ + DI+++D+ S AT RLT+T I + S+SPD Sbjct: 239 QANEGVMSFAPRFSPDGRMVVYSMTQGSNTDIWAMDVASGATRRLTSTPAIETAPSFSPD 298 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S+IVFESDR G +QLYVM ++G + RIS E Y PVWSP+GD IAFTK + +F Sbjct: 299 GSRIVFESDRSGTQQLYVMPASGGEGTRISF-GEGRYGTPVWSPRGDRIAFTKQNKGRFH 357 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLI 431 IGVM DGS+ERLL + PTW+P+GR ++FSR+ G G S LYS+D++GRN + Sbjct: 358 IGVMNTDGSEERLLTASFLDEGPTWAPNGRVIMFSRETQGAQGASALYSVDISGRNLRRV 417 Query: 432 NTPAYASDPQWVGF 445 TPA ASDP W Sbjct: 418 RTPAGASDPSWGPL 431 >gi|85706711|ref|ZP_01037803.1| translocation protein TolB precursor [Roseovarius sp. 217] gi|85668769|gb|EAQ23638.1| translocation protein TolB precursor [Roseovarius sp. 217] Length = 440 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 168/443 (37%), Positives = 252/443 (56%), Gaps = 11/443 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHA--FVKVATNSANYSPVSIAFTKFVSID----ELGGKVS 66 M+ + LL L P +++ P+ A FVS ELG ++ Sbjct: 1 MRFMMTLLAALTLWAMPALAQGNGPLRIEITEGVIEPMPFAAPDFVSDSAAGQELGRNIA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V++ DL + +F I ++ +IT+ +S ++ DW ++ AQ L+TG V +G R+ Sbjct: 61 SVIAADLSGTGLFRQIPSEAHISRITSFESPVQYADWRAVNAQALITGAVSTDGAGRIVA 120 Query: 127 EFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 +FR++DV +++ G++ + WR+IAH ++D +Y ITGE G F+SR++FV+ES Sbjct: 121 KFRIYDVFSGQELGSGQQLVGTQDGWRRIAHKVADQVYSRITGEGGYFDSRVVFVAESGP 180 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L +MD DGAN +YLT S I+ PRFSP +V Y +Y+ R+Y++D Sbjct: 181 KDQRAKRLAIMDYDGANTQYLTDSAS-IVLAPRFSPTGDRVLYTSYETG-FPRIYVLDVA 238 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + +M APRF+ NG+ + S+ + D+Y++D+ S A+ RLT I Sbjct: 239 NVGRRELPTLDGTMSFAPRFAPNGRTVVYSLTQGGNTDLYTMDVGSGASTRLTTAPSIET 298 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + SY+PD SQIVFESDR G QLYVM + G + +RIS E Y PVWSP+GDL+AFTK Sbjct: 299 APSYNPDGSQIVFESDRSGTPQLYVMSAGGGEARRISF-GEGRYGTPVWSPRGDLVAFTK 357 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLN 424 S +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G G + LYS+D+ Sbjct: 358 QSKGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRETQGAQGQASLYSVDIT 417 Query: 425 GRNETLINTPAYASDPQWVGFMD 447 GRN + T ASDP W + Sbjct: 418 GRNLKAVPTNTGASDPSWSPLQN 440 >gi|254512269|ref|ZP_05124336.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae bacterium KLH11] gi|221535980|gb|EEE38968.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae bacterium KLH11] Length = 439 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 170/442 (38%), Positives = 252/442 (57%), Gaps = 11/442 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIH-AFVKVATNSANYSPVSIAFTKFVSIDELG----GKVSE 67 MK+ L + L P +++ + P+ A FV +S Sbjct: 2 MKLLTSLFVGLTLLAAPVHAQSGPLRLEIDEGIIEPLPFAVPNFVPDGPAAAQYAQDISR 61 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ DL + +F IS D+F ++++ D+ +F DW ++ AQ LVTG V GK RL V Sbjct: 62 VIVSDLTGTGLFREISADAFISRVSSFDAPVQFPDWKAINAQALVTGAVNVSGK-RLTVR 120 Query: 128 FRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FR+WDV +++ G +F + WR++AH ++D +Y ITGE F+SR+ FVSES Sbjct: 121 FRVWDVFSGQELGNGLQFAGTTDGWRRMAHKVADQVYSRITGEGAYFDSRVAFVSESGPK 180 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L +MD DGAN++YLT S I+ PRFSP+ ++ Y +Y+ R+YL+D Sbjct: 181 DQRRKRLAIMDYDGANVQYLTDS-AAIVLAPRFSPSGDRLLYTSYETGQP-RIYLLDVGR 238 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +M +PRFS +G+ + S+ + D++ +DL + + RLTNT I + Sbjct: 239 VQRQELPTEAGTMSFSPRFSPDGRSIVYSLSQGGNTDLWKMDLATRQSVRLTNTPAIETA 298 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SYSPD SQIVFESDR G QLY+M + G + RIS + Y PVWSP+GDLIAFTK Sbjct: 299 PSYSPDGSQIVFESDRSGSPQLYIMPATGGEATRISF-GQGRYGTPVWSPRGDLIAFTKQ 357 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNG 425 + +F IGVM+ +G +ERLL + PTWSP+GR ++F+R+ G +G S LYS+D++G Sbjct: 358 NKGRFHIGVMRTNGDEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRSALYSVDISG 417 Query: 426 RNETLINTPAYASDPQWVGFMD 447 RN + TP SDP W + Sbjct: 418 RNLRPVRTPDGGSDPSWGPLQN 439 >gi|163854156|ref|YP_001642199.1| beta-propeller repeat-containing to-pal system protein TolB [Methylobacterium extorquens PA1] gi|218533101|ref|YP_002423917.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium chloromethanicum CM4] gi|240141615|ref|YP_002966095.1| protein tolB precursor [Methylobacterium extorquens AM1] gi|163665761|gb|ABY33128.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium extorquens PA1] gi|218525404|gb|ACK85989.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium chloromethanicum CM4] gi|240011592|gb|ACS42818.1| protein tolB precursor [Methylobacterium extorquens AM1] Length = 446 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 168/414 (40%), Positives = 248/414 (59%), Gaps = 3/414 (0%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 A +++ S + P+ IA F LG V+ V++ +L+RS F + + F + Sbjct: 33 RAQLQLRIGSGAFQPMPIAVADFAGDASLGTLVASVITNNLRRSGYFTPLEKGRFPENP- 91 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + D+ P F+ W G Q LVTGRV ++ RL V FRLWDV +QI G+++ + A+ R Sbjct: 92 SFDAAPNFEAWKGAGVQALVTGRVGRDASGRLTVAFRLWDVASGQQITGQQYGTDVANAR 151 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 + H +SD +Y +TG F+SR+ FV ES + L VMD+DGAN+R LT D Sbjct: 152 RTGHLVSDAVYTKVTGLGPWFDSRVAFVDESGPKENRRKRLMVMDQDGANVRALTGGGDV 211 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + PR+SP Q +A+ T +V ++D + + +GNF SM +PRFS +G+R Sbjct: 212 SVVAPRYSPAGQDIAFMTQAPGQQPKVQMIDLETGK-RQTVGNFASMSASPRFSPDGRRL 270 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 ++SVQ+ DI +VD+ S A +T L I+ S SY+PD SQIVFESDR G +Q+YVM Sbjct: 271 VMSVQQGGNADIVTVDIASKAQTPVTQGLAIDTSPSYAPDGSQIVFESDRGGSQQIYVMG 330 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 ++GS+ +R+S E S P WSP+GDLIAFT+ FAI VMK DGS ER+L E + Sbjct: 331 ADGSNPRRLSF-GEGSASQPAWSPRGDLIAFTRQRKGGFAICVMKPDGSGERVLTEGFHN 389 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 ++PT++P+G+ ++F R G G KLY +D+ G+ E + TP++ASDP W + Sbjct: 390 ESPTFAPNGQYVMFFRDPGGQGGGKLYMVDITGKVEQPVPTPSFASDPTWSPLL 443 >gi|220924307|ref|YP_002499609.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylobacterium nodulans ORS 2060] gi|219948914|gb|ACL59306.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium nodulans ORS 2060] Length = 442 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 170/418 (40%), Positives = 244/418 (58%), Gaps = 5/418 (1%) Query: 31 SIHAFVKVATN-SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 A + + ++ P+ IA F L V+ +V+ +L+RS F I + F + Sbjct: 26 PAEAQLNLRVGPGGSFQPMPIAVADFSGDPSLAPLVAGIVTSNLKRSGYFVPIEKARFPE 85 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 N D+ PRF W GAQ LVTGRV ++ ++ EFRLWDV +Q+IG+++ S A Sbjct: 86 TP-NFDAAPRFAAWKEAGAQGLVTGRVSRDASGGIKAEFRLWDVLAGQQMIGQQYAGSAA 144 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 + R++ H ISD +Y ITG G F++RI FV ES + L +MD+DGAN+RYLT S Sbjct: 145 NARRMGHLISDAVYTKITGIGGFFDTRIAFVDESGSKERRRKRLAIMDQDGANVRYLT-S 203 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + + PR+SP Q + Y + RV +++ A + I M +PRFS +G Sbjct: 204 GEAAVVAPRYSPATQDITYMSQITGQQPRVQVINLETG-ARQVIPTKAEMSTSPRFSPDG 262 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 +R ++S Q IY +DL S A R+TN I+ S S+SPD +IVFESDR G++Q+Y Sbjct: 263 RRLVMSDQDGGNASIYVMDLASKAQTRVTNANAIDTSPSFSPDGREIVFESDRGGQQQIY 322 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM ++GS+ +RIS E S P WSP+GD IAFT+ FAI +MK DGS ER+L E Sbjct: 323 VMGADGSNPRRISF-GEGSASQPAWSPRGDYIAFTRQRKGSFAICIMKPDGSGERVLTEG 381 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+G+ ++F R G G KLY +D+ GR E + TP+YASDP W +D Sbjct: 382 FHNEGPTWAPNGQYVLFFRDPGGQAGGKLYMVDITGRVEQPVPTPSYASDPSWSPLID 439 >gi|83943918|ref|ZP_00956375.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36] gi|83954491|ref|ZP_00963202.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1] gi|83840775|gb|EAP79946.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1] gi|83845165|gb|EAP83045.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36] Length = 440 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 162/439 (36%), Positives = 250/439 (56%), Gaps = 10/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEV 68 ++LCL L+ + +++ P+ A F ++ ++ V Sbjct: 4 RILSLCLALIGGVASVAQAQDGPLRIEITEGVIEPLPFAVPSFQPESGDAGQMAVDLARV 63 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 VS+DL S +F + ++ +++ ++ ++ DW ++ AQ L+TG V G + L V+F Sbjct: 64 VSEDLVGSGLFREVPASAYISTVSDFNAPIQYADWKAINAQALITGAVSVSG-NTLNVKF 122 Query: 129 RLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RL+DV ++ G +F + WR++AH ++D +Y ITGE G F+SR+++VSE+ Sbjct: 123 RLYDVFSGAELGSGLQFSGTVDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVSETGPKD 182 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L VMD DGAN+RYLT S I+ PRFSP+ ++ Y +Y+ R+Y++D Sbjct: 183 DRAKRLAVMDYDGANVRYLTDSSS-IVLAPRFSPSGDRILYTSYESG-FPRIYVLDIGSV 240 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + +M APRFS +G + S+ + DIY++D+ + + RLTNT I + Sbjct: 241 QRRVLESAEGTMSFAPRFSPSGNTVVYSLTQGGNTDIYTMDINTGQSTRLTNTPAIETAP 300 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SYSPD S+IVFESDR G +QLY+M + G + RIS E Y PVWSP+GDL+AFTK + Sbjct: 301 SYSPDGSRIVFESDRSGSQQLYIMPATGGEATRISF-GEGRYGTPVWSPRGDLVAFTKQN 359 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGR 426 +F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G G S LYS+D++GR Sbjct: 360 KGRFHIGVMRLDGSEERLLTASFLDEGPTWAPNGRVIMFARETQGAGGASSLYSVDISGR 419 Query: 427 NETLINTPAYASDPQWVGF 445 N + T SDP W Sbjct: 420 NLKPVRTQEGGSDPSWSPL 438 >gi|254486268|ref|ZP_05099473.1| Tol-Pal system beta propeller repeat protein TolB [Roseobacter sp. GAI101] gi|214043137|gb|EEB83775.1| Tol-Pal system beta propeller repeat protein TolB [Roseobacter sp. GAI101] Length = 430 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 161/432 (37%), Positives = 249/432 (57%), Gaps = 10/432 (2%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQR 75 +L+ + +++ P+ A F ++ ++ VVS+DL Sbjct: 1 MLLCAVAGIAQAQQGPLRIEITEGVIEPLPFAVPSFQPESGEAGQMAVDLARVVSEDLVG 60 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F I +F +++ ++ ++ DW ++ AQ L+TG V G + L V+FRL+DV Sbjct: 61 SGLFREIPASAFISTVSDFNAPVQYADWKAINAQALITGAVNVSG-NTLSVKFRLYDVFS 119 Query: 136 RKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 ++ G +F + WR++AH ++D +Y ITGE G F+SR+++VSE+ + L Sbjct: 120 GAELGSGLQFQGTVDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVSETGPKDGRQKRLA 179 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 VMD DGAN+RYLT S I+ PRFSP ++ Y +Y+ R+Y++D + Sbjct: 180 VMDYDGANVRYLTDSTS-IVLAPRFSPTGDRILYTSYESG-FPRIYVLDIGSVQRRVLES 237 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +M APRFS +G+ + S+ + DIY++D+ + + RLTNT I + SYSPD S Sbjct: 238 ADGTMSFAPRFSPSGQTVVYSLTQGGNTDIYTMDINTGQSVRLTNTPAIETAPSYSPDGS 297 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +IVFESDR G +QLY+M ++G + +RIS E Y PVWSP+GDL+AFTK + +F IG Sbjct: 298 RIVFESDRSGTQQLYIMPASGGEAQRISF-GEGRYGTPVWSPRGDLVAFTKQNKGRFHIG 356 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINT 433 VM+ DGS+ERLL + PTW+P+GR ++F+R+ G G S LYS+D++GRN + T Sbjct: 357 VMRLDGSEERLLTASFLDEGPTWAPNGRVIMFARETQGAGGSSSLYSVDISGRNLKPVRT 416 Query: 434 PAYASDPQWVGF 445 SDP W Sbjct: 417 QEGGSDPSWSPL 428 >gi|163738349|ref|ZP_02145764.1| TolB-like protein [Phaeobacter gallaeciensis BS107] gi|161388270|gb|EDQ12624.1| putative protein tolB [Phaeobacter gallaeciensis BS107] Length = 446 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 166/451 (36%), Positives = 252/451 (55%), Gaps = 11/451 (2%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID--- 59 +R ++A L M L V+ + +++ P+ A FV Sbjct: 1 MRTYLAT-LVMGATLLGAAVMTSALPAQAQDGPLRIEITDGVIEPLPYAVPGFVPETPAA 59 Query: 60 -ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 EL +S V++ DL + +F + + K+T+ D+ + DW ++ AQ L+TG + Sbjct: 60 AELARDISRVIAADLSGTGLFREVPASAHISKVTDFDAAVSYADWKAVNAQALITGALSV 119 Query: 119 EGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +RL V FR DV K++ G +F + WR++AH ++D IY ITGE G F+SR+ Sbjct: 120 NG-NRLTVRFRGHDVFAEKELGTGLQFSGTTDGWRRMAHKVADVIYSRITGESGYFDSRV 178 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +FVSES + L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 179 VFVSESGPKNDRRKRLAIMDYDGANVQYLTNSAS-IVLAPRFSPTGDRVLYTSYESG-FP 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++++D + + M APRF+ +G+ + S + DI+++++ + A RL Sbjct: 237 QIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGARTRL 296 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ I + S+SPD SQIVFESDR G QLYVM + G + +RIS Y PVWSP+ Sbjct: 297 TSAPSIETAPSFSPDGSQIVFESDRSGAPQLYVMAATGGEARRISF-GAGRYGTPVWSPR 355 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 GD+IAFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G Sbjct: 356 GDMIAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRA 415 Query: 418 -LYSIDLNGRNETLINTPAYASDPQWVGFMD 447 LYS+D++GRN + TP ASDP W + Sbjct: 416 LLYSVDVSGRNLKPVRTPDGASDPAWSPLQN 446 >gi|126725523|ref|ZP_01741365.1| translocation protein TolB precursor [Rhodobacterales bacterium HTCC2150] gi|126704727|gb|EBA03818.1| translocation protein TolB precursor [Rhodobacterales bacterium HTCC2150] Length = 444 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 177/451 (39%), Positives = 257/451 (56%), Gaps = 15/451 (3%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M +R A + + L L V++G F S +++ P+ IA FV+ + Sbjct: 1 MKMR---AIARGLILALTLSPVMMGTGFAQS--GPLRIEVTDGVIEPLPIAVPSFVAENA 55 Query: 61 ----LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 L ++S VV DL S +F + +++ +TN D+ R+ DW ++ AQ LVTG V Sbjct: 56 AAKNLAEEISRVVVSDLVGSGLFREVPREAHIANVTNFDAAVRYADWKAINAQGLVTGAV 115 Query: 117 IKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 +GK R+ V+FRL+DV K + G +F S +WR++AH ++D Y ITGE F+S Sbjct: 116 SVQGK-RVIVKFRLFDVFSDKPLGDGLQFAGSTDAWRRMAHKVADAAYSRITGEGPYFDS 174 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R++FVSE+ G + L VMD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 175 RVVFVSEAGPKGQRQKRLAVMDYDGANVQYLTDSTS-IVLGPRFSPTGDRVLYTSYETGS 233 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 R+Y +D ++ +PRF+ +G + S ++ DIY++ ++ A + Sbjct: 234 P-RIYALDVASVSRRVLDSQAATLSFSPRFAPDGDTVVFSRSQNGNSDIYTMSVRGGAQK 292 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLT++ I+ SYSPD QIVFESDR G +Q+YVM + G + KRIS Y PVWS Sbjct: 293 RLTSSPAIDTGPSYSPDGKQIVFESDRSGNQQIYVMPAGGGEPKRISF-GAGRYGTPVWS 351 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 P+GD IAFTK + +F IGVM+ DGS+ERLL + PTW+P+GR ++F R+ G G Sbjct: 352 PRGDYIAFTKQNKGRFHIGVMRTDGSEERLLTSSFLDEGPTWAPNGRVIMFMRETSGANG 411 Query: 416 -SKLYSIDLNGRNETLINTPAYASDPQWVGF 445 S LYS+DL GRN + TP ASDP W Sbjct: 412 TSSLYSVDLTGRNLKRVPTPLGASDPAWSPL 442 >gi|146338269|ref|YP_001203317.1| protein tolB [Bradyrhizobium sp. ORS278] gi|146191075|emb|CAL75080.1| Protein tolB precursor [Bradyrhizobium sp. ORS278] Length = 376 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 171/378 (45%), Positives = 246/378 (65%), Gaps = 4/378 (1%) Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ +L+RS F + +F ++ITN D +P+F W L Q L+TGR ++ RL V+F Sbjct: 2 ITNNLKRSGYFAPVDPAAFPERITNFDQLPQFNSWKPLSVQGLLTGRATRQSDGRLNVQF 61 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWDV +Q +++ ++P WR+IAH ISD +Y ++ GEKG F+SR++FV ES S Sbjct: 62 RLWDVNSGQQSAAQQYVTAPEYWRRIAHIISDQVYTALLGEKGYFDSRVVFVDESGPSER 121 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DGAN+RYLT D ++ PRFSP+ Q++ Y + D +VYL + + Sbjct: 122 RVKRLALMDQDGANVRYLTRGSD-LVLTPRFSPSSQEITYMEFGQGDP-KVYLFNIETGQ 179 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +GNF M +PRFS +G+R ++S+Q+ +++ +DL+S +T RLT+T I+ S Sbjct: 180 -REIVGNFPGMSFSPRFSPDGQRIILSLQQGGNSNLFVMDLRSRSTTRLTDTPAIDTSPC 238 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 YSPD SQI FESDR GK Q+YVM ++G + +RIS E SY PVWSP+GD IAFTK G Sbjct: 239 YSPDGSQICFESDRGGKPQIYVMSASGGNAQRISF-GEGSYSTPVWSPRGDYIAFTKQGG 297 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 +FAIG+MK DGS ER+L + + PT+SP+GR L+F R G G LY+ID++GR E Sbjct: 298 GQFAIGIMKTDGSGERILTAGFHNEGPTFSPNGRVLMFFRDPGGTAGPSLYTIDVSGRFE 357 Query: 429 TLINTPAYASDPQWVGFM 446 + TP YASDP W + Sbjct: 358 QKVPTPGYASDPAWSPLL 375 >gi|163742234|ref|ZP_02149622.1| translocation protein TolB precursor [Phaeobacter gallaeciensis 2.10] gi|161384564|gb|EDQ08945.1| translocation protein TolB precursor [Phaeobacter gallaeciensis 2.10] Length = 446 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 165/451 (36%), Positives = 252/451 (55%), Gaps = 11/451 (2%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID--- 59 +R ++A L M L V+ + +++ P+ A FV Sbjct: 1 MRTYLAT-LVMGATLLGAAVMTSALPAQAQDGPLRIEITDGVIEPLPYAVPGFVPETPAA 59 Query: 60 -ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 EL +S V++ DL + +F + + K+T+ D+ + DW ++ AQ L+TG + Sbjct: 60 AELARDISRVIAADLSGTGLFREVPASAHISKVTDFDAAVSYADWKAVNAQALITGALSV 119 Query: 119 EGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +RL V FR DV K++ G +F + WR++AH ++D IY ITGE G F+SR+ Sbjct: 120 NG-NRLTVRFRGHDVFAEKELGTGLQFSGTTDGWRRMAHKVADVIYSRITGESGYFDSRV 178 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +FVSES + L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 179 VFVSESGPKNDRRKRLAIMDYDGANVQYLTNSAS-IVLAPRFSPTGDRVLYTSYESG-FP 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++++D + + M APRF+ +G+ + S + DI+++++ + A RL Sbjct: 237 QIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGARTRL 296 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ I + S+SPD SQIVFESDR G QLYVM + G + +RIS Y PVWSP+ Sbjct: 297 TSAPSIETAPSFSPDGSQIVFESDRSGAPQLYVMAATGGEARRISF-GAGRYGTPVWSPR 355 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 GD++AFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G Sbjct: 356 GDMVAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRA 415 Query: 418 -LYSIDLNGRNETLINTPAYASDPQWVGFMD 447 LYS+D++GRN + TP ASDP W + Sbjct: 416 LLYSVDVSGRNLKPVRTPDGASDPAWSPLQN 446 >gi|260576644|ref|ZP_05844631.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp. SW2] gi|259021129|gb|EEW24438.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp. SW2] Length = 445 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 170/439 (38%), Positives = 254/439 (57%), Gaps = 12/439 (2%) Query: 16 NLCLLLVLIGGF-FPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDELGGK----VSEVV 69 + L L GG F A +++ N+ P+ A FV+ + G +S V+ Sbjct: 10 AIAFSLALFGGVTFAQLAQAEPLRIELNNPVIEPMPFAVPDFVAENGGGEDYAAKISRVI 69 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DL + +F I + ++T+ D+ + DW ++ AQ L+TG V G D++ V+FR Sbjct: 70 AADLAGTGLFAEIPAAAHIARVTSFDAPVSYPDWKAINAQALITGAVQASG-DQIVVKFR 128 Query: 130 LWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV +Q+ G +F + SWR++AH ++D Y ITGE G F+SR++FVSES Sbjct: 129 LFDVFSGQQMGEGLQFAGTAQSWRRMAHKVADAAYARITGEGGYFDSRVVFVSESGPKNQ 188 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L VMD DGAN+ YLT S I+ PRFSP+ ++ + +Y ++YLMD + Sbjct: 189 RAKRLGVMDYDGANVAYLTDSAS-IVLAPRFSPSGDRILFTSYTSG-FPQIYLMDVGSLQ 246 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +M APRF+ +G+ + S+++ DIY+VD QS +LT+ I + S Sbjct: 247 TRSLEEQPGTMTFAPRFAPDGRTVVFSLERGGNTDIYTVDTQSGTLSQLTDAPSIETAPS 306 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 YSPD S+IVFESDR G +QLYVM + G + +RIS + Y PVWSP+GD IAFTK + Sbjct: 307 YSPDGSKIVFESDRSGTQQLYVMSAGGGEPRRIS-NGAGRYGTPVWSPRGDYIAFTKQNE 365 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRN 427 +F IGVM DGS+E+LL + PTW+P+GR ++F+R++ G+ G LYS+D++GRN Sbjct: 366 GRFHIGVMLTDGSEEKLLTASFLDEGPTWAPNGRVIMFTREQAGEGGQPALYSVDISGRN 425 Query: 428 ETLINTPAYASDPQWVGFM 446 I+T ASDP W + Sbjct: 426 LRQISTETPASDPAWSPLL 444 >gi|254477250|ref|ZP_05090636.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp. R11] gi|214031493|gb|EEB72328.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp. R11] Length = 446 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 174/451 (38%), Positives = 255/451 (56%), Gaps = 11/451 (2%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID--- 59 +R ++A L M L ++ G + +++ P+ A FV Sbjct: 1 MRTYLAS-LAMGAALVGAAIMGTGQPVKAQDGPLRIEITDGVIEPLPYAVPDFVPETPAA 59 Query: 60 -ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 EL ++S V++ DL + +F I + KI+N DS + DW ++ AQ L+TG + Sbjct: 60 AELAREISRVIAADLSGTGLFREIPASAHISKISNFDSPVSYADWKAINAQALITGGLSV 119 Query: 119 EGKDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 G +RL V FR DV K++ G +F + WR++AH ++D IY ITGE G F+SR+ Sbjct: 120 NG-NRLTVRFRGHDVFAEKELGSGLQFAGTTDGWRRMAHKVADVIYNRITGESGYFDSRV 178 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +FVSES + L +MD DGAN++YLT S I+ PRFSP +V Y +Y+ Sbjct: 179 VFVSESGPKNDRRKRLAIMDYDGANVQYLTNSAS-IVLAPRFSPTGDRVLYTSYESG-FP 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++++D + + M APRF+ +G+ + S + DIY++D+ S A +RL Sbjct: 237 QIHVLDVGSVQRRVLSSDNGIMSFAPRFAPDGRTVVYSQAQGGNTDIYTLDINSGARQRL 296 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ I + SYSPD SQIVFESDR G QLYVM ++G + +RIS Y PVWSP+ Sbjct: 297 TSAPSIETAPSYSPDGSQIVFESDRSGAPQLYVMPASGGEARRISF-GAGRYGTPVWSPR 355 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 GDLIAFTK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G+ G Sbjct: 356 GDLIAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGENGRA 415 Query: 418 -LYSIDLNGRNETLINTPAYASDPQWVGFMD 447 LYS+D+ GRN + TP ASDP W + Sbjct: 416 LLYSVDITGRNLKPVRTPDGASDPAWSPLQN 446 >gi|300112858|ref|YP_003759433.1| Tol-Pal system beta propeller repeat-containing protein TolB [Nitrosococcus watsonii C-113] gi|299538795|gb|ADJ27112.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus watsonii C-113] Length = 428 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 114/435 (26%), Positives = 220/435 (50%), Gaps = 10/435 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG-GKVSEVVSK 71 MK+ +L + + ++ A + + + + IA F ++ V+ V++ Sbjct: 1 MKVCFKILWLWMLMVAAQNVSAVLTIEITGGTEAALPIAIVPFQKEGKVPPEDVAAVIAA 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + ++ + I +FQDW LG++ LV G+V G DR V F+L+ Sbjct: 61 DLARSGRFAPLPEEDLIARPHAASDI-QFQDWRRLGSEGLVIGKVSALGADRYEVSFQLF 119 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIK 190 D+ +Q++G+++ A R +AH I+D IY+++TGEKG F + I FV+ S + G + Sbjct: 120 DIYKAEQLVGRRYQVPAAGLRHLAHQIADLIYETLTGEKGFFTTHIAFVTVSRAAHGAKQ 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V D DG N + S++ I P +SP+ ++AY +++ V++ + R + Sbjct: 180 YALQVADVDGHNPHTILRSKEPI-LSPAWSPDGTQIAYVSFERRRS-EVFVQELRTGQ-R 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + +F + AP +S +G++ + + K+ +IY DL ++ RLT+ I+ ++ Sbjct: 237 QSVASFPGINSAPAWSPDGRKLALVLSKEGNPEIYIRDLATDRLTRLTHNTAIDTEPVWA 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD IVF SDR G+ QLY + +G +R++ + + ++P G +A + Sbjct: 297 PDGKSIVFTSDRGGQPQLYQVPVSGGQAQRLTFEGAYNASA-SFAPNGRRLALIHGDKGQ 355 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F I V+ + ++L + ++P+++P+GR ++++ G G L ++ +GR Sbjct: 356 FHIAVLNLQSKELQVLTQTRMDESPSFAPNGRMILYATS--GPQGGVLAAVSTDGRVRQR 413 Query: 431 INTPAY-ASDPQWVG 444 + +P W Sbjct: 414 LAQQGDEVREPAWSP 428 >gi|310816577|ref|YP_003964541.1| translocation protein TolB precursor [Ketogulonicigenium vulgare Y25] gi|308755312|gb|ADO43241.1| translocation protein TolB precursor [Ketogulonicigenium vulgare Y25] Length = 442 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 169/444 (38%), Positives = 245/444 (55%), Gaps = 13/444 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFV----SIDELGG 63 +N + L L L G F A +++ P+ IA F E+ Sbjct: 1 MNKFMALVLTAALAGPFAAMPALAQQGPLRITVTQGVIEPLPIAVPTFQAETAGAAEVAN 60 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++S +V++DL S +F + SF D + DW ++ Q LVTG V G ++ Sbjct: 61 QISRLVAQDLTGSGLFREVPASSFISNHAMFDQAVAYADWRAINVQGLVTGAVSVSG-NQ 119 Query: 124 LRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L V+FRL+D+ ++ G +F S WR++AH +SD +Y ITGE G F+SR++FV+E Sbjct: 120 LTVKFRLYDIYTGAELGQGLQFNGSVQGWRRMAHKVSDAVYSRITGESGYFDSRVVFVAE 179 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S + +MD DGAN++YLT + ++ PRFSP ++ Y +Y R+ L+ Sbjct: 180 SGPKDNRLKRVAIMDYDGANVQYLTDANS-LVLAPRFSPTGAQILYTSYQSG-APRINLL 237 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D A + M +PRFS +G + S+ DIY D+++ RLTN Sbjct: 238 DVASASARQLPTEVGEMAFSPRFSRDGGSVIYSLANGGNTDIYRTDIRTGGHTRLTNAPS 297 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I S S SPD SQIVFESDR G QLYVM +NG + +RIS + Y PVWSP+GD+IA Sbjct: 298 IETSPSLSPDGSQIVFESDRSGTTQLYVMGANGGEARRISF-GDGRYGTPVWSPRGDMIA 356 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-GSKLYSI 421 FTK G +F IGVM+ DGS+ERLL + PTW+P+GR L+F+R+ G+T G +YS+ Sbjct: 357 FTKQQGGRFHIGVMRTDGSEERLLTSSFLDEGPTWAPNGRMLMFTRETQGETGGPSIYSV 416 Query: 422 DLNGRNETLINTPAYASDPQWVGF 445 D++GRN + T ++ASDP W Sbjct: 417 DISGRNLRQVATGSFASDPSWGPL 440 >gi|84501652|ref|ZP_00999824.1| translocation protein TolB precursor [Oceanicola batsensis HTCC2597] gi|84390273|gb|EAQ02832.1| translocation protein TolB precursor [Oceanicola batsensis HTCC2597] Length = 443 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 163/419 (38%), Positives = 246/419 (58%), Gaps = 10/419 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 +++ P+ A FV + E+ +++ VVS DL + +F I Q++ + Sbjct: 29 PLRIEITEGVIEPLPFAVPDFVPENGASAEMAAQITRVVSDDLTGTGLFREIPQNAHIAR 88 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPA 149 +T+ S ++ DW ++ AQ L+TG V G DR+ V+FRL+DV +++ G +F + A Sbjct: 89 VTSFSSPVQYADWKAINAQALITGAVGVTG-DRVNVKFRLYDVFSGQEMGDGLQFSGTTA 147 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH ++D +Y ITGE F+SR+++VSE+ + L +MD DGAN++YLT S Sbjct: 148 GWRRMAHKVADAVYSRITGEGPYFDSRVVYVSETGPKNDRRKRLAIMDYDGANVQYLTDS 207 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ PRFSP +V Y +Y+ ++Y++D +M APRF +G Sbjct: 208 SS-IVLAPRFSPTGDRVLYTSYETG-FPKIYVLDVASVGRRTLNTPEGTMSFAPRFHPDG 265 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + + S+ + DI+S+D+ S + RLT I + S+SPD SQIVFESDR G +QLY Sbjct: 266 QTVVYSLTQGGNTDIFSLDINSGQSTRLTQAPSIETAPSFSPDGSQIVFESDRSGTQQLY 325 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +M G + RIS + Y PVWSP+GDLIAFTK S +F IGVM+ DGS+ERLL Sbjct: 326 IMPVGGGEPTRISF-GQGRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRTDGSEERLLTAS 384 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + PTW+P+GR ++F+R+ G+ GS LYS+D++GRN + T ASDP W D Sbjct: 385 FLDEGPTWAPNGRVIMFTRETQGEQGSASLYSVDISGRNLKRVRTEGAASDPSWSPLQD 443 >gi|296535985|ref|ZP_06898130.1| tol-Pal system beta propeller repeat protein TolB [Roseomonas cervicalis ATCC 49957] gi|296263689|gb|EFH10169.1| tol-Pal system beta propeller repeat protein TolB [Roseomonas cervicalis ATCC 49957] Length = 434 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 172/419 (41%), Positives = 253/419 (60%), Gaps = 15/419 (3%) Query: 38 VATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 + A P+ IA F +LG ++ V++ +L+ S +F + + ++ Q Sbjct: 19 IDITRARTDPIPIALPDFAGGSPQAQQLGQNITRVIANNLRNSGLFRPVERGAYIQTPEA 78 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 + PRFQDW +GAQ LVTGR +G DR R+EFRLW+V +Q+ G + ++ A+WR+ Sbjct: 79 AAAAPRFQDWRVIGAQALVTGRAEPQG-DRARIEFRLWEVSSEQQLQGTAYTANAANWRQ 137 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 IAH ISD IY+ + GEKG F++RI++V+ES L +MD+DG N R+LT Q+ Sbjct: 138 IAHVISDVIYERMLGEKGYFDTRIVYVAESGPRDRRTRRLAIMDQDGENHRFLTDGSFQV 197 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 PRF PN +++A+ +Y + RVYL + R + +GNF+ M L+PRFS +G+ + Sbjct: 198 -LTPRFHPNARQIAFMSYFNNQP-RVYLFNLDSGRQ-EVLGNFQGMTLSPRFSPDGRSVV 254 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +S + +IY VDL S +LT+ +++S SYSPD SQIVF SDR G +QLYVM + Sbjct: 255 LSSARGGDANIYVVDLASRRERQLTSGGGLDVSPSYSPDGSQIVFNSDRGGDQQLYVMDA 314 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G +RIS Y PVWSP+GDLIAFT+ SG +F IGVM+ DGS ER+L E +++ Sbjct: 315 GGGGARRISF-GNGRYATPVWSPRGDLIAFTRISGGRFGIGVMRPDGSGERILSEGWSME 373 Query: 394 APTWSPSGRSLIFSRK------KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 P+++P+GR L F R+ + G ++L ID+ G NE I TP A+DP W + Sbjct: 374 GPSFAPNGRVLAFYRESQARDARGGGYSARLSMIDIAGFNERQIVTPTDATDPSWSPLL 432 >gi|259417642|ref|ZP_05741561.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp. TrichCH4B] gi|259346548|gb|EEW58362.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp. TrichCH4B] Length = 441 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 162/445 (36%), Positives = 252/445 (56%), Gaps = 14/445 (3%) Query: 13 MKINLCLLLVLIGGFFPT-SIHAF---VKVATNSANYSPVSIAFTKFVSIDELGG----K 64 M+ + +L+ + P ++ A +++ P+ A F++ Sbjct: 1 MRNAIATVLLGLAMLLPVGAVQAQDGPLRIEITDGVIEPLPFAVPDFIAESPAAAQYSAD 60 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++ V+++DL S +F I + ++ T+ D+ F DW ++ AQ L+TG V G +R+ Sbjct: 61 IARVIAEDLVGSGLFREIPKVAYISPYTDFDAAVNFTDWKAINAQALITGSVSLSG-NRI 119 Query: 125 RVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FR +DV +++ G + + WR+I H ++D IY +TGE G F+SR++FVSE+ Sbjct: 120 TVRFRAYDVFAGQELGSGLQLSGTTDGWRRIGHKVADTIYSRLTGESGYFDSRVVFVSET 179 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 K L +MD DGAN++YLT S + I+ PRFSP +V Y +Y+ +++++D Sbjct: 180 GPKDDRKKRLAIMDYDGANVQYLTNS-ESIVLAPRFSPTGDRVLYTSYESG-FPQIHVLD 237 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + SM APRF+ NG + S D++S+D+ S +RLT+ I Sbjct: 238 VGRVQRRILSAGNGSMSFAPRFAPNGHTIVYSQSAGGNTDLFSMDINSGNPQRLTSAPSI 297 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + S+SPD SQ+VFESDR G QLYVM +G + KRIS + Y PVWSP+GD IAF Sbjct: 298 ETAPSFSPDGSQLVFESDRSGTSQLYVMPVSGGEAKRISF-GQGRYGTPVWSPRGDYIAF 356 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSID 422 TK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G ++LYS+D Sbjct: 357 TKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGQARLYSVD 416 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 ++GRN + TP ASDP W + Sbjct: 417 ISGRNLKPVKTPDGASDPSWSPLQN 441 >gi|254454187|ref|ZP_05067624.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 238] gi|198268593|gb|EDY92863.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 238] Length = 441 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 161/438 (36%), Positives = 241/438 (55%), Gaps = 10/438 (2%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSE 67 N +++ P S +++ + A F + + +S Sbjct: 4 NFLTLFAAIMLAFVSITPASAQEPLRLTLRDGVIEALPFALPTFQSEVAGSEGMAADISR 63 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+++DL + +F I +F + S F DW ++ AQ LVTG V G +++ V+ Sbjct: 64 VITEDLNGTGLFRQIPASAFISTPASFGSAIAFPDWRAINAQALVTGAVAVNG-NQVTVK 122 Query: 128 FRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRL+DV ++ G +F + WR++AH +SD +Y ITGE G F+SR+++V+E+ Sbjct: 123 FRLYDVFSGGEMGEGLQFAGTTDGWRRMAHKVSDAVYSRITGEAGYFDSRVVYVAETGPK 182 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L +MD DGAN++YLT S I+ PRFSP+ ++ Y +Y+ R+ ++D Sbjct: 183 DDRAKRLAIMDYDGANVQYLTDS-SAIVLAPRFSPSGDRILYTSYESG-FPRINILDVAT 240 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + M +PRFS +G++ + S+ DIY DL + RLTNT I S Sbjct: 241 VVRQQMTTAAGEMAFSPRFSRDGRQVIYSLANGGNTDIYRTDLATGQNTRLTNTPAIETS 300 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD SQIVFESDR G +QLYVM +NG + +RIS + Y PVWSP+GDLIAFTK Sbjct: 301 PSFSPDGSQIVFESDRSGTQQLYVMSANGGEPQRISFE-NGRYGTPVWSPRGDLIAFTKQ 359 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNG 425 +F IGVM+ DG++ERLL + PTW+P+GR ++F+R+ G D + LYS+D+ G Sbjct: 360 ESGRFHIGVMRTDGTEERLLTSSFLDEGPTWAPNGRVIMFARETQGSDGTTGLYSVDITG 419 Query: 426 RNETLINTPAYASDPQWV 443 RN + TP SDP W Sbjct: 420 RNLRRVTTPQGGSDPSWG 437 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 10/138 (7%) Query: 314 SQIVFESDREGKE----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 S++V+ ++ K+ +L +M +G++ + ++ D A P +SP GD I +T + Sbjct: 171 SRVVYVAETGPKDDRAKRLAIMDYDGANVQYLT-DSSAIVLAPRFSPSGDRILYTSYESG 229 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGR 426 I ++ + + + +P +S GR +I+S G+T +Y DL G+ Sbjct: 230 FPRINILDVATVVRQQMTTAAGEMAFSPRFSRDGRQVIYSLANGGNT--DIYRTDLATGQ 287 Query: 427 NETLINTPAYASDPQWVG 444 N L NTPA + P + Sbjct: 288 NTRLTNTPAIETSPSFSP 305 >gi|89053466|ref|YP_508917.1| translocation protein TolB [Jannaschia sp. CCS1] gi|119371046|sp|Q28TS0|TOLB_JANSC RecName: Full=Protein tolB; Flags: Precursor gi|88863015|gb|ABD53892.1| Twin-arginine translocation pathway signal [Jannaschia sp. CCS1] Length = 445 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 159/443 (35%), Positives = 240/443 (54%), Gaps = 9/443 (2%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGK 64 + L L G F S +++ P+ A F ++ Sbjct: 5 RNFIRTTSALAASTALPGYAFGQS--GPLRLEITEGVIEPLPFALPTFLAVGGAEDAAAD 62 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS V++ DL+ + +F I D++ +ITN + + DW ++ AQ L+TG+V +L Sbjct: 63 VSRVIAADLRGTGLFRQIPPDAYISQITNFGAPVAYPDWQAINAQALITGQVEARADGQL 122 Query: 125 RVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FRL+DV + + G +F SWR++AHT++D +Y ITGE G F++R+ F++E Sbjct: 123 VVRFRLFDVFSQAPLGEGLQFVGPADSWRRMAHTVADQVYSRITGEGGYFDTRVAFIAEE 182 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L +MD DGAN+++LT SR I+ PRFSP ++ Y +Y+ + Sbjct: 183 GPKNARLKRLAIMDYDGANVQFLTDSRS-IVLAPRFSPQGDRILYTSYESGFPQVYIMDV 241 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + R P +M +PRFS +G+ + S+ DIYS+DL + +LT I Sbjct: 242 ATVQRRPLEAIPAETMTFSPRFSPSGQSVVFSLVDGSNTDIYSLDLATGTRRQLTQAPSI 301 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + S+SPD SQIVFESDR G +Q+Y+M ++G + +R+S Y PVWSP+GD IAF Sbjct: 302 ETAPSFSPDGSQIVFESDRSGNQQIYIMPADGGEARRVSAGT-GRYGTPVWSPRGDYIAF 360 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSID 422 TK +F IGVM+ DGS ERLL + PTW+P+GR ++F+R+ GD G +YS+D Sbjct: 361 TKQENGRFHIGVMRTDGSDERLLTSSFLDEGPTWAPNGRVIMFTRETPGDDGAPAVYSVD 420 Query: 423 LNGRNETLINTPAYASDPQWVGF 445 ++GRN + TP ASDP W Sbjct: 421 ISGRNLQRVATPGMASDPAWSPL 443 >gi|163745825|ref|ZP_02153184.1| translocation protein TolB precursor [Oceanibulbus indolifex HEL-45] gi|161380570|gb|EDQ04980.1| translocation protein TolB precursor [Oceanibulbus indolifex HEL-45] Length = 448 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 162/436 (37%), Positives = 248/436 (56%), Gaps = 16/436 (3%) Query: 22 VLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQRS 76 P HA +++ + P+ A F ++ ++ VVS+DL + Sbjct: 15 AATLTLAPNQSHAQPLRIVIDDPTIEPLPFAVPSFQPESGEAGQMAVDLARVVSEDLTGT 74 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 +F I ++ +++ ++ + DW ++ AQ L+TG V G + + V+FR++DV Sbjct: 75 GLFREIPASAYISTVSDFNAPVEYADWKAINAQALITGAVNVSG-NSVNVKFRVYDVFSG 133 Query: 137 KQII------GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++++ G +F + WR++AH ++D +Y ITGE G F+SR+++VSE+ + Sbjct: 134 EELLDGRGQGGLQFTGTVDGWRRMAHKVADAVYSRITGEGGYFDSRVVYVSETGPKDARQ 193 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L VMD DGAN++YLT S I+ PRFSP +V Y +Y+ R+Y++D + Sbjct: 194 KRLAVMDYDGANLKYLTESGS-IVLAPRFSPTGDRVLYTSYESG-FPRIYVLDIGTVQRR 251 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 SM APRFS +G+ + S+ + DI+S+D+ S + RLTNT I + S+S Sbjct: 252 ALQSAEGSMAFAPRFSPSGQTVVYSLSQGGNTDIFSMDINSGQSVRLTNTPAIETAPSFS 311 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S+IVFESDR G QLYVM + G + RIS E Y PVWSP+GDL+AFTK + + Sbjct: 312 PDGSRIVFESDRSGSPQLYVMPATGGEATRISF-GEGRYGTPVWSPRGDLVAFTKQNKGR 370 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNET 429 F IGVM+ DGS+ERLL + PTW+P+GR ++F+R+ G G S LYS+D++GRN Sbjct: 371 FHIGVMRLDGSEERLLTASFLDEGPTWAPNGRVIMFARETQGAGGSSSLYSVDISGRNLK 430 Query: 430 LINTPAYASDPQWVGF 445 + TP SDP W Sbjct: 431 PVRTPEGGSDPSWSPL 446 >gi|114798605|ref|YP_758888.1| tolB protein [Hyphomonas neptunium ATCC 15444] gi|114738779|gb|ABI76904.1| tolB protein [Hyphomonas neptunium ATCC 15444] Length = 451 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 162/455 (35%), Positives = 252/455 (55%), Gaps = 22/455 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSE 67 + ++ L ++++ A ++V + N+ P IA F E+ +++E Sbjct: 1 MLKRLMPFLAVIMLAVGLVAPASAQLQVRVDEGNFKPTPIAIPDFQVTGANTEIARQITE 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL + +F++ + SF Q+ + ++ PRF DW + LV G + +L V Sbjct: 61 VVRADLASTGLFDMQNPASFIQRDLSINAEPRFADWKIIRTDALVVGAFEELPDGKLAVS 120 Query: 128 FRLWDVKDRKQI-----IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 FRLWDV + + G++ ++P +WR+IAH I+D IY +TGE F++RI++++E Sbjct: 121 FRLWDVYGGELMRINGEPGRRLTTTPENWRRIAHKIADSIYTRLTGEDPYFDTRIVYIAE 180 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + L +MD DGAN +YLT R + PRFSP+ Q++ Y +++ RVYL Sbjct: 181 TGPKTERVKRLAIMDSDGANQQYLTSGRSTV-LTPRFSPSSQEITYMSFEGGRP-RVYLF 238 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + R + +GNF M APRF ++G+ L+S + D+Y ++L++ + RLT+ Sbjct: 239 NIETGRQ-ELLGNFPGMTFAPRFGTDGQSVLLSQAQRGNTDVYIMNLRTRESRRLTDHPA 297 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK----------RISQDKEASYFDP 352 I+ S S SPD +VF SDR G QLY+M ++GS + RI+ Y P Sbjct: 298 IDTSPSMSPDGKSVVFNSDRGGTPQLYIMNTDGSPRACASGGRDTACRITF-GRGRYSTP 356 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 VWSP+GDLIAFTK G KF IGV+ DG ERLL E + P WSP+GR ++F R+ Sbjct: 357 VWSPRGDLIAFTKQEGGKFYIGVIGTDGKGERLLSESYLDEGPDWSPNGRVIVFFRENRP 416 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 G++L+S+DL+GRNE + T ASDP W ++ Sbjct: 417 GAGAQLWSVDLSGRNERRVMTQTDASDPAWSPVLE 451 >gi|294085866|ref|YP_003552626.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665441|gb|ADE40542.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 431 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 170/434 (39%), Positives = 253/434 (58%), Gaps = 13/434 (2%) Query: 22 VLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSD 77 +++ HA ++V +P IA F D E+G ++S ++S DL+ S Sbjct: 1 MIMTVMVAGVAHAQLRVVITEGQVAPTPIAIADFTGPDGEVTEIGRQMSAIISNDLESSG 60 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F I +F P P F DW +GA+ L+ G + L+VEF LWDV +K Sbjct: 61 LFQPIDSAAFISPPKAPSIRPNFSDWTPVGAKGLLVGSAYTDENGMLQVEFVLWDVVTQK 120 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 I S PA R+++H I+D +Y+ TG+ G F+++I++V+ES L +MD Sbjct: 121 DITQGSGNSDPAGLRQLSHKIADYVYEEFTGDTGYFDTQIVYVAESGSQSQRVKRLAIMD 180 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DG N RYLT D ++ PRFSP +VAY Y +E+ VYL+D R +R+G+F Sbjct: 181 QDGHNHRYLTNGLD-LVLTPRFSPTANEVAYLNYFNEEP-NVYLLDVFTAR-TERLGSFP 237 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 M APRF +G + ++S+ KD DIY +D+++ + +LT + I+ S SYSPD +IV Sbjct: 238 GMTFAPRFGPDGDKLIMSLAKDGLTDIYEMDMRTQSITQLTKSASIDTSPSYSPDGKRIV 297 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G +QLYVM ++GS+ KRIS + Y PVWSP+GD++AFTK +G F IGVM Sbjct: 298 FNSDRGGSQQLYVMNADGSNVKRISY-GDGRYATPVWSPRGDIVAFTKMTGGTFYIGVMN 356 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK----DGDTG-SKLYSIDLNGRNETLIN 432 DG+ ERLL + ++ PTW+P+GR L++ +++ DG G + LY +D+ G NE I Sbjct: 357 IDGTGERLLAQGFLVEGPTWAPNGRVLMYFKQQPFKDDGSGGKTALYRVDITGFNERRII 416 Query: 433 TPAYASDPQWVGFM 446 TP+ ASDP W + Sbjct: 417 TPSDASDPAWSPLL 430 >gi|99082205|ref|YP_614359.1| translocation protein TolB [Ruegeria sp. TM1040] gi|118574598|sp|Q1GE19|TOLB_SILST RecName: Full=Protein tolB; Flags: Precursor gi|99038485|gb|ABF65097.1| TolB-like protein [Ruegeria sp. TM1040] Length = 441 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 255/445 (57%), Gaps = 14/445 (3%) Query: 13 MKINLCLLLVLIGGFFPT-SIHAF---VKVATNSANYSPVSIAFTKFVSIDELGG----K 64 M+ + +L+ + P ++ A +++ P+ A F++ Sbjct: 1 MRNAIATVLLGLAMLLPVGAVQAQDGPLRIEITDGVIEPLPFAVPDFIADTPAAAQYATD 60 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 ++ V+++DL S +F I + ++ T+ D+ F DW ++ AQ L+ G V G DR+ Sbjct: 61 IARVIAQDLVGSGLFREIPKVAYISPYTDFDAEVNFTDWKAINAQALIAGAVSLSG-DRI 119 Query: 125 RVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V FR +DV +++ G + + WR+IAH ++D IY +TGE G F+SR++FVSE+ Sbjct: 120 TVRFRGYDVFAGQELGAGLQLSGTTDGWRRIAHKVADTIYSRLTGEGGYFDSRVVFVSET 179 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 K L +MD DGAN++YLT S D I+ PRFSP +V Y +Y+ +++++D Sbjct: 180 GPKNDRKKRLAIMDYDGANVQYLTNS-DAIVLAPRFSPTGDRVLYTSYESG-FPQIHVLD 237 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + SM APRF+ NG+ + S + D++S+D+ S +RLT+ I Sbjct: 238 VGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQSQGGNTDLFSMDINSGNPQRLTSAPSI 297 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + S+SPD SQIVFESDR G QLYVM ++G + KRIS + Y PVWSP+GD IAF Sbjct: 298 ETAPSFSPDGSQIVFESDRSGTSQLYVMSASGGEAKRISF-GQGRYGTPVWSPRGDYIAF 356 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSID 422 TK + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G +G ++LYS+D Sbjct: 357 TKQNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGQARLYSVD 416 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 ++GRN + TP ASDP W + Sbjct: 417 ISGRNLKPVKTPDGASDPSWSPLQN 441 >gi|77163683|ref|YP_342208.1| hypothetical protein Noc_0145 [Nitrosococcus oceani ATCC 19707] gi|119371047|sp|Q3JER8|TOLB_NITOC RecName: Full=Protein tolB; Flags: Precursor gi|76881997|gb|ABA56678.1| TolB [Nitrosococcus oceani ATCC 19707] Length = 434 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 119/440 (27%), Positives = 222/440 (50%), Gaps = 13/440 (2%) Query: 11 LNMKIN---LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE-LGGKVS 66 +N ++ + +L +L+ S+ A + + + + IA F + V+ Sbjct: 2 MNTRVWCKIIGMLALLVWLVSSPSVFAVLTIEITGGTEAALPIAIVPFQNEGSTPPENVA 61 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V++ DL RS F + ++ + N I +FQDW LG++ LV G+VI G DR V Sbjct: 62 AVIAADLARSGRFAPLPEEDLISRPRNASDI-QFQDWRRLGSEGLVIGKVISLGADRYEV 120 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D+ +Q++G+++ A R +AH I+D IY+++TGEKG F + I FV+ S + Sbjct: 121 RFQLFDIYKEEQLVGRRYQVPAAGLRHLAHQIADLIYETLTGEKGIFTTHIAFVTVSRAA 180 Query: 187 -GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G + SL V D DG N + S++ I P +SP+ ++AY +++ V++ + R Sbjct: 181 HGAKQYSLQVADVDGHNPHTILRSKEPI-LSPAWSPDGTQLAYVSFERRRS-EVFVQELR 238 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + + +F + AP +S +G + + + K+ +IY DL + RLT+ I+ Sbjct: 239 TGQ-RQSVASFSGINSAPDWSPDGGKLALVLSKEGNPEIYIRDLATGRLTRLTHNTAIDT 297 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +++PD IVF SDR G+ QLY + +G +R++ D + ++P G +A Sbjct: 298 EPAWAPDGGSIVFTSDRGGRPQLYQIPVSGGRAQRLTFDGAYNASA-SFAPDGRRLALIH 356 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +F I V+ + ++L E ++P+++P+GR ++++ G L ++ +G Sbjct: 357 GDKGQFHIAVLNLQSKELQVLTETRMDESPSFAPNGRMILYATSS--PQGGVLAAVSTDG 414 Query: 426 RNETLINTPAY-ASDPQWVG 444 R + +P W Sbjct: 415 RVRQRLAQQGDEVREPAWSP 434 >gi|304320242|ref|YP_003853885.1| translocation protein TolB precursor [Parvularcula bermudensis HTCC2503] gi|303299144|gb|ADM08743.1| translocation protein TolB precursor [Parvularcula bermudensis HTCC2503] Length = 442 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 165/441 (37%), Positives = 242/441 (54%), Gaps = 8/441 (1%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVK--VATNSANYSPVSIAFTKF----VSIDELGGKVS 66 + L L V P A + + P+ +A F + + +S Sbjct: 4 IVRVLSALFVAFTLALPLGAVAQDEPLIDIVGGRTDPMPVALPAFIATGEGAERVSADLS 63 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 EV+ DL S +F I +F Q++ + ++ PRF DW ++ A+VL+ G V R++V Sbjct: 64 EVIRDDLASSSLFAPIDPAAFIQQLQSVNTPPRFADWRAIDARVLLVGEVTALSGGRIQV 123 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 RLWDV KQ+ F + + RK H I+D +Y+ +TGE G F+++I++V+ES Sbjct: 124 AARLWDVGASKQLGTIAFKTPATNVRKAGHEIADFVYEQLTGEPGYFDTKIVYVAESGPK 183 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L +MD+DGAN LT + PRFSP QQ++ + D+ +VYL D Sbjct: 184 TDRRKRLMIMDQDGANPSILTDGLNFDALTPRFSPTQQQIIFLAMFDDRPSQVYLYDIET 243 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +G++R M APRFS++G+ L+S+++ DI +DL + ERLT I+ S Sbjct: 244 TEM-EALGSWRGMTFAPRFSTDGRGVLLSIEEAGNTDIARMDLITRRIERLTRNPAIDTS 302 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S SPD I F SDR G +Q+YVM ++GSDQ+RI+ +Y PVWSP+GDLIAFT+ Sbjct: 303 PSMSPDGRHITFASDRGGSQQIYVMNADGSDQRRITF-GNGTYGTPVWSPRGDLIAFTRL 361 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +F IGV+K DG+ ERLL E + PTWSP+GR ++F R+ LYSIDL GR Sbjct: 362 YRGRFYIGVVKPDGTGERLLTESYLDEGPTWSPNGRVIMFFRENRPGGPVNLYSIDLTGR 421 Query: 427 NETLINTPAYASDPQWVGFMD 447 N + T ASDP W +D Sbjct: 422 NLRRVETSTEASDPAWSPLLD 442 >gi|254435418|ref|ZP_05048925.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus oceani AFC27] gi|207088529|gb|EDZ65801.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus oceani AFC27] Length = 422 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 118/429 (27%), Positives = 217/429 (50%), Gaps = 10/429 (2%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE-LGGKVSEVVSKDLQRSD 77 +L +L+ S+ A + + + + IA F + V+ V++ DL RS Sbjct: 1 MLALLVWLVSSPSVFAVLTIEITGGTEAALPIAIVPFQNEGSTPPENVAAVIAADLARSG 60 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F + ++ + N I +FQDW LG++ LV G+VI G DR V F+L+D+ + Sbjct: 61 RFAPLPEEDLISRPRNASDI-QFQDWRRLGSEGLVIGKVISLGADRYEVRFQLFDIYKEE 119 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVM 196 Q++G+++ A R +AH I+D IY+++TGEKG F + I FV+ S + G + SL V Sbjct: 120 QLVGRRYQVPAAGLRHLAHQIADLIYETLTGEKGIFTTHIAFVTVSRAAHGAKQYSLQVA 179 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + S++ I P +SP+ ++AY +++ V++ + R + + + +F Sbjct: 180 DVDGHNPHTILRSKEPI-LSPAWSPDGTQLAYVSFERRRS-EVFVQELRTGQ-RQSVASF 236 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP +S +G + + + K+ +IY DL + RLT+ I+ +++PD I Sbjct: 237 SGINSAPDWSPDGGKLALVLSKEGNPEIYIRDLATGRLTRLTHNTAIDTEPAWAPDGGSI 296 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G+ QLY + +G +R++ D + ++P G +A +F I V+ Sbjct: 297 VFTSDRGGRPQLYQIPVSGGRAQRLTFDGAYNASA-SFAPDGRRLALIHGDKGQFHIAVL 355 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + ++L E ++P+++P+GR ++++ G L ++ +GR + Sbjct: 356 NLQSKELQVLTETRMDESPSFAPNGRMILYATSS--PQGGVLAAVSTDGRVRQRLAQQGD 413 Query: 437 -ASDPQWVG 444 +P W Sbjct: 414 EVREPAWSP 422 >gi|146276614|ref|YP_001166773.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17025] gi|166229985|sp|A4WQ04|TOLB_RHOS5 RecName: Full=Protein tolB; Flags: Precursor gi|145554855|gb|ABP69468.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 444 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 162/420 (38%), Positives = 237/420 (56%), Gaps = 10/420 (2%) Query: 33 HAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 +++ P+ A FV +L ++ V++ DL + +F I + Sbjct: 28 QGPLRIQITEGVIEPLPFAVPNFVAETSGASQLAQDMARVIAADLSGTGLFREIPASAHI 87 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSS 147 ++T+ D+ + DW ++ AQ L+TG V G DR+ V+FRL DV + + G +F S Sbjct: 88 SRVTSFDAPIAYNDWKAINAQALITGSVSASG-DRVVVKFRLHDVFSDQPLGEGLQFAGS 146 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + WR++AH ++D Y ITGE G F+SR++FVSE+ L VMD DGAN++YLT Sbjct: 147 ASGWRRMAHKVADVAYSRITGEGGYFDSRVVFVSETGPKNARAKRLAVMDYDGANVQYLT 206 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S I+ PRFSP ++ + +Y R+YLMD +M APRF+ Sbjct: 207 DSSS-IVLAPRFSPTGDRILFTSYSTG-FPRIYLMDVGSLATRSLAEQPGTMTFAPRFAP 264 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+ S+++ DIY++D S +LTN+ I + SYSPD SQIVFESDR G +Q Sbjct: 265 DGRTVAFSLEQGGNTDIYTLDTASGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 324 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LY+M + G + +RIS + Y PVWSP+GDLIAFTK +F IGVM+ DGS+ERLL Sbjct: 325 LYIMPAGGGEPRRIS-NGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLT 383 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + PTW+P+GR L+F+R+ G G LYS+D++GRN + ASDP W + Sbjct: 384 ASFLDEGPTWAPNGRVLMFTREGAGAGGQPALYSVDISGRNLKKVPLSVPASDPAWSPLL 443 >gi|89068040|ref|ZP_01155457.1| translocation protein TolB precursor [Oceanicola granulosus HTCC2516] gi|89046279|gb|EAR52336.1| translocation protein TolB precursor [Oceanicola granulosus HTCC2516] Length = 446 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 161/448 (35%), Positives = 248/448 (55%), Gaps = 17/448 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHA-------FVKVATNSANYSPVSIAFTKF----VSID 59 + ++ LL L+ F + +++ N P+ A F + Sbjct: 1 MTHRLFANLLAGLLVAFAAMWLAGAAAAQGGPLRITVTDPNVEPLPFAIPAFEAETAGAE 60 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 L +S +V++DL + +F I +F ++T+ + DW ++ AQ L+TG V Sbjct: 61 GLASDISRLVAQDLVNTGLFREIPSTAFVSQLTSFAQPVAYTDWRTINAQALITGAVAVN 120 Query: 120 GKDRLRVEFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 G ++ V+FRL+DV +++ G++ + WR++AH ++D +Y ITGE G F+SR++ Sbjct: 121 G-GQVTVKFRLYDVFSGQELGAGQQLVGTTDGWRRMAHKVADQVYSRITGESGYFDSRVV 179 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 FVSE+ + L +MD DGAN++YLT S I+ PRFSP +V Y ++D R Sbjct: 180 FVSETGPKNDRRKRLAIMDYDGANVQYLTDSGS-IVLAPRFSPTGDRVIYTSWDSG-FPR 237 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + +D + M +PRFS +G++ + S+ + +DI+ D+ + +RLT Sbjct: 238 INAIDVGTVSRQQIPVQAGEMAFSPRFSRDGRQVIYSLSEGGNIDIWRTDITTGQHQRLT 297 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + I + S SPD +IVFESDR G +QLYVM G + +RIS E Y PVWSP+G Sbjct: 298 SAPSIETAPSLSPDGQRIVFESDRSGSQQLYVMPVTGGEPQRISF-GEGRYGSPVWSPRG 356 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSK 417 D+IAFTK +F IGVM+ DGS+ERLL + PTWSP+GR L+FSR+ G D Sbjct: 357 DMIAFTKQHAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVLMFSRETQGADGAPA 416 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGF 445 +YS+D++GRN + TPA+ASDP W Sbjct: 417 IYSVDVSGRNLRRVTTPAFASDPSWGPL 444 >gi|77464240|ref|YP_353744.1| translocation protein TolB [Rhodobacter sphaeroides 2.4.1] gi|126463082|ref|YP_001044196.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17029] gi|332559129|ref|ZP_08413451.1| translocation protein TolB [Rhodobacter sphaeroides WS8N] gi|119371057|sp|Q3J041|TOLB_RHOS4 RecName: Full=Protein tolB; Flags: Precursor gi|166229984|sp|A3PM58|TOLB_RHOS1 RecName: Full=Protein tolB; Flags: Precursor gi|77388658|gb|ABA79843.1| Probable TolB protein precursor [Rhodobacter sphaeroides 2.4.1] gi|126104746|gb|ABN77424.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332276841|gb|EGJ22156.1| translocation protein TolB [Rhodobacter sphaeroides WS8N] Length = 444 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 162/420 (38%), Positives = 237/420 (56%), Gaps = 10/420 (2%) Query: 33 HAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 +++ P+ A F EL ++ V++ DL + +F I + Sbjct: 28 QGPLRIQITEGVIEPLPFAVPDFVAENAGASELARDMARVIASDLSGTGLFREIPASAHI 87 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSS 147 ++T+ ++ + DW ++ AQ L+TG V G DR+ V+FRL+DV + + G +F S Sbjct: 88 SRVTSFEAPVAYGDWKAINAQALITGSVSASG-DRVVVKFRLYDVFSDQPLGEGLQFAGS 146 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + WR++AH ++D Y ITGE G F+SR++FVSES L VMD DGAN++YLT Sbjct: 147 ASGWRRMAHKVADVAYSRITGEGGYFDSRVVFVSESGPKNARAKRLAVMDYDGANVQYLT 206 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S I+ PRFSP ++ + +Y R+YLMD +M APRF+ Sbjct: 207 DSSS-IVLAPRFSPTGDRILFTSYSTG-FPRIYLMDVGSLATRGLAEQPGTMTFAPRFAP 264 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+ S+++ DIY++D S +LTN+ I + SYSPD SQIVFESDR G +Q Sbjct: 265 DGRTVAFSLEQGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 324 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LY+M + G + +RIS + Y PVWSP+GDLIAFTK +F IGVM+ DGS+ERLL Sbjct: 325 LYIMPAGGGEPRRIS-NGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLT 383 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + PTW+P+GR L+F+R+ G G LYS+D++GRN + ASDP W + Sbjct: 384 ASFLDEGPTWAPNGRVLMFTREGAGAGGQPALYSVDISGRNLKKVPLSVPASDPAWSPLL 443 >gi|221640124|ref|YP_002526386.1| translocation protein TolB [Rhodobacter sphaeroides KD131] gi|221160905|gb|ACM01885.1| Protein tolB precursor [Rhodobacter sphaeroides KD131] Length = 435 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 162/420 (38%), Positives = 237/420 (56%), Gaps = 10/420 (2%) Query: 33 HAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 +++ P+ A F EL ++ V++ DL + +F I + Sbjct: 19 QGPLRIQITEGVIEPLPFAVPDFVAENAGASELARDMARVIASDLSGTGLFREIPASAHI 78 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSS 147 ++T+ ++ + DW ++ AQ L+TG V G DR+ V+FRL+DV + + G +F S Sbjct: 79 SRVTSFEAPVAYGDWKAINAQALITGSVSASG-DRVVVKFRLYDVFSDQPLGEGLQFAGS 137 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + WR++AH ++D Y ITGE G F+SR++FVSES L VMD DGAN++YLT Sbjct: 138 ASGWRRMAHKVADVAYSRITGEGGYFDSRVVFVSESGPKNARAKRLAVMDYDGANVQYLT 197 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S I+ PRFSP ++ + +Y R+YLMD +M APRF+ Sbjct: 198 DSSS-IVLAPRFSPTGDRILFTSYSTG-FPRIYLMDVGSLATRGLAEQPGTMTFAPRFAP 255 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+ S+++ DIY++D S +LTN+ I + SYSPD SQIVFESDR G +Q Sbjct: 256 DGRTVAFSLEQGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQ 315 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LY+M + G + +RIS + Y PVWSP+GDLIAFTK +F IGVM+ DGS+ERLL Sbjct: 316 LYIMPAGGGEPRRIS-NGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLT 374 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + PTW+P+GR L+F+R+ G G LYS+D++GRN + ASDP W + Sbjct: 375 ASFLDEGPTWAPNGRVLMFTREGAGAGGQPALYSVDISGRNLKKVPLSVPASDPAWSPLL 434 >gi|323138231|ref|ZP_08073303.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis sp. ATCC 49242] gi|322396483|gb|EFX99012.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis sp. ATCC 49242] Length = 435 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 162/418 (38%), Positives = 253/418 (60%), Gaps = 5/418 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 T A + + P+++A F+ DE ++ V + +RS I + + Sbjct: 23 TPASAGRIIELKGGGFQPINVAVAPFIG-DEAARTITSVTMNNFKRSVFLKPIDGATVGE 81 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 +PD P + ++ AQ ++TGR + G RL+ EFRL+DV +Q+ G+++ + A Sbjct: 82 D-GSPDQTPNLDAYKAINAQFVLTGRSQRTGDGRLKTEFRLFDVTTGEQVAGQQYVTESA 140 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 + R++AH +SD ++ +TGEKG F++R++FV ES + L +MD+DGAN+RYLT Sbjct: 141 NMRRVAHLLSDAVFTRVTGEKGFFDTRVVFVDESGSKDKRRKRLAMMDQDGANVRYLTRG 200 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 D ++ PRFSP+ V Y ++ + +V LM+ + + +GNF M +PRFS +G Sbjct: 201 -DDLVVTPRFSPSSLDVTYMAFNSDGEPKVLLMNIESSQ-REVVGNFPGMTFSPRFSPDG 258 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 ++ ++S+ + + ++Y++DL+S T RLT+T I+ + S+SPD S+I FESDR G +Q+Y Sbjct: 259 QKIIMSLSQGSSTNLYTMDLRSRTTTRLTDTSAIDTAPSFSPDGSRIAFESDRGGSQQIY 318 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM ++G + KRIS Y PVWSP+GD IAFTK +G F+IGVMK DGS ER+L E Sbjct: 319 VMGAHGGEAKRISFGG-GRYSTPVWSPKGDYIAFTKQNGGNFSIGVMKTDGSGERILTEG 377 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + PTW+P+G L+F R+ G G K+Y +D+ GR E + TP YASDP W D Sbjct: 378 FHNEGPTWAPNGLFLMFFRESGGAGGPKIYMVDVFGRTELQVPTPGYASDPAWGPLQD 435 >gi|182677268|ref|YP_001831414.1| beta-propeller repeat-containing to-pal system protein TolB [Beijerinckia indica subsp. indica ATCC 9039] gi|182633151|gb|ACB93925.1| Tol-Pal system beta propeller repeat protein TolB [Beijerinckia indica subsp. indica ATCC 9039] Length = 448 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 165/435 (37%), Positives = 257/435 (59%), Gaps = 5/435 (1%) Query: 14 KINLCLLLV-LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ + L +I + PVSIA T F + ++ + Sbjct: 18 KLLIGLSAAPVIAPIPRAFAQDRYLDVRPGGEFKPVSIAVTTFAGDGSGPSHPTSIIINN 77 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 +RS N + SF ++NPD P+ W ++ AQ +VTGR + RL+ EFRLWD Sbjct: 78 FRRSVFLNPLDPKSFVSDVSNPDQAPQMDAWKTINAQFVVTGRSARSADGRLQTEFRLWD 137 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V +QI G+++ + P + R++AH ISD I+ ITGEKG F++R++FV E+ + Sbjct: 138 VTSGQQIAGQQYVTDPNNARRVAHIISDTIFSRITGEKGFFDTRVVFVDETGARDHRRKR 197 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD+DGAN+RYLT D ++ PRFSP+ Q + Y ++ D +V L++ + + Sbjct: 198 LAIMDQDGANVRYLTRG-DDLVVTPRFSPSSQDITYMSFGAADP-KVLLLNIETGQ-REV 254 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 +GNF M +PRFS +G++ ++S+ + + +++++DL+S T RL+++ I+ S SYSPD Sbjct: 255 VGNFPGMTFSPRFSPDGQKIVMSLSQGASSNLFTMDLRSRNTTRLSDSSSIDTSPSYSPD 314 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +QIVFESDR G +Q+Y+M + G +R+S + Y PVWSP+GD IAFT+ G F Sbjct: 315 GTQIVFESDRGGTQQIYMMSAAGGGTRRVSF-GDGRYSTPVWSPRGDYIAFTRQKGSSFG 373 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IGVMK DGS ER+L E + + PTW+P+G ++F R G G +L+ +DL GR E + Sbjct: 374 IGVMKPDGSGERILTEGFHNEGPTWAPNGLYIMFFRDASGQGGPRLFMVDLYGRGEFPVP 433 Query: 433 TPAYASDPQWVGFMD 447 TP++ASDP W ++ Sbjct: 434 TPSFASDPAWSPLLN 448 >gi|114765731|ref|ZP_01444829.1| translocation protein TolB precursor [Pelagibaca bermudensis HTCC2601] gi|114541948|gb|EAU44983.1| translocation protein TolB precursor [Roseovarius sp. HTCC2601] Length = 446 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 170/426 (39%), Positives = 255/426 (59%), Gaps = 13/426 (3%) Query: 29 PTSIHAF---VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNL 81 P + A +++ P++ A FV + ++++V++ DL + +F Sbjct: 24 PNAAQAQGGPLRIEITEGTIEPMAYAVPSFVAETPGAQQYAEQITQVIADDLTGTGLFRE 83 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII- 140 I +D+ +IT+ +S +F DW ++ A VL+TG V ++ R+ V+FR+WDV ++ Sbjct: 84 IPRDAHISRITSFESPVQFADWKAINALVLLTGAVSEQ-NGRVTVKFRIWDVFAGTELGD 142 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G +F ++ WR++AH ++D +Y +TGE G F+SR++FVSES L +MD DG Sbjct: 143 GMQFAATSDGWRRLAHKVADQVYSRLTGESGYFDSRVVFVSESGPKDQRAKRLAIMDYDG 202 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 AN++YLT SR I+ PRFSPN ++V Y +Y+ + RV++++ ++ M Sbjct: 203 ANVQYLTDSRS-IVLAPRFSPNGERVLYTSYESGEP-RVHVLNVGAVQSQIMSAGGGVMS 260 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 APRFS +G + + SV DIY DL S +T +LT T I + S+SPD S+IVFES Sbjct: 261 FAPRFSPDGSKVVYSVTSGSNTDIYMRDLASGSTTQLTFTPAIETAPSFSPDGSRIVFES 320 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G +QLYVM ++G + RIS + Y PVWSP+GDLIAFTK + +F IGVM+ DG Sbjct: 321 DRSGSQQLYVMPASGGEPTRISF-GQGRYGTPVWSPRGDLIAFTKQNQGRFHIGVMRTDG 379 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASD 439 S+ERLL + PTW+P+GR L+FSR+ G +G S LYS+D+ GR T + TP ASD Sbjct: 380 SEERLLTASHLDEGPTWAPNGRVLMFSRETQGASGTSSLYSVDVAGRKLTRVRTPDGASD 439 Query: 440 PQWVGF 445 P W Sbjct: 440 PSWGPL 445 >gi|254441731|ref|ZP_05055224.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 307] gi|198251809|gb|EDY76124.1| Tol-Pal system beta propeller repeat protein TolB [Octadecabacter antarcticus 307] Length = 441 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 157/423 (37%), Positives = 237/423 (56%), Gaps = 10/423 (2%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 P + +++ + A F D + +S V++ DL + +F I Sbjct: 21 PATAQEPLRLTLRDGVIEALPFALPTFQAEVAGSDGMAADISRVIAADLNGTGLFRQIPS 80 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKK 143 +F + S F DW ++ +Q LVTG V G +++ V+FRL+DV ++ G + Sbjct: 81 SAFISTPASFGSPIAFADWRAINSQALVTGAVAVNG-NQVTVKFRLYDVFSGAEMGEGLQ 139 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 F + + WR++AH ++D +Y ITGE G F+SR+++V+E+ + + VMD DGAN+ Sbjct: 140 FAGTASGWRRMAHKVADAVYSRITGESGYFDSRVVYVAETGPKDDREKRIAVMDYDGANV 199 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 +YLT S I+ PRFSP+ ++ Y +Y+ R+ ++D + M +P Sbjct: 200 QYLTDS-STIVLAPRFSPSGDRILYTSYESG-FPRINILDVATVMRQQMRTADGEMAFSP 257 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 RFS +G++ + S+ DIY DL + RLTNT I + S+SPD SQIVFESDR Sbjct: 258 RFSRDGRQVIYSLANGGNTDIYRTDLATGQNMRLTNTPAIETAPSFSPDGSQIVFESDRS 317 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +QLY+M +NG + +RIS Y PVWSP+GDLIAFTK +F IGVM+ DG++E Sbjct: 318 GTQQLYMMSANGGEPQRISF-GNGRYGTPVWSPRGDLIAFTKQELGRFHIGVMRTDGTEE 376 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 RLL + PTW+P+GR ++FSR+ G D + LYS+D+ GRN + TP SDP W Sbjct: 377 RLLTSSFLDEGPTWAPNGRVIMFSRETQGSDGTTGLYSVDITGRNLRRVTTPQGGSDPSW 436 Query: 443 VGF 445 Sbjct: 437 GPL 439 >gi|15892329|ref|NP_360043.1| translocation protein TolB [Rickettsia conorii str. Malish 7] gi|32699713|sp|Q92IL4|TOLB_RICCN RecName: Full=Protein tolB; Flags: Precursor gi|15619474|gb|AAL02944.1| tolB protein precursor [Rickettsia conorii str. Malish 7] Length = 444 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 164/445 (36%), Positives = 250/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + +V F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKVSFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEMLEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRVLVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|260428940|ref|ZP_05782917.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp. SE45] gi|260419563|gb|EEX12816.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp. SE45] Length = 440 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 168/417 (40%), Positives = 251/417 (60%), Gaps = 10/417 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 +++ P++ A FV + +++ VV+ DL + +F I +D+ + Sbjct: 27 PLRIEITEGTIEPMAYAVPDFVAETPGAQQYAQQIARVVADDLTGTGLFREIPRDAHISR 86 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPA 149 IT+ +S +F DW ++ A VL+TG V +EG R+ V+FR+WDV ++ G +F ++ Sbjct: 87 ITSFESPVQFADWKAINALVLLTGAVSEEG-GRISVKFRVWDVFAGTELGDGMQFAATAD 145 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH ++D +Y +TGE G F+SR++FVSES L +MD DGAN++YLT S Sbjct: 146 GWRRLAHKVADQVYSRLTGETGYFDSRVVFVSESGPKEQRAKRLAIMDYDGANVQYLTDS 205 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R I+ PRFSPN +V Y +Y+ + ++++++ ++ M APRFS +G Sbjct: 206 RS-IVLAPRFSPNGDRVLYTSYETGEP-QIHVLNVGAVQSRILRSAAGVMSFAPRFSPDG 263 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + SV + DIY +D+ S A+ +LT T I + S+SPD S+IVFESDR G +QLY Sbjct: 264 SRVVYSVTQGSNTDIYMMDVASGASTQLTATPAIETAPSFSPDGSRIVFESDRSGTQQLY 323 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM + G + RIS + Y PVWSP+GD+IAFTK +F IGVM+ DGS+ERLL Sbjct: 324 VMPAGGGEATRISF-GQGRYGTPVWSPRGDMIAFTKQHQGRFHIGVMRTDGSEERLLTAS 382 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + PTW+P+GR L+FSR+ G G S LY++D+ GR T + TPA ASDP W Sbjct: 383 PLDEGPTWAPNGRVLMFSRETLGAQGTSSLYTVDVAGRKLTRVRTPAGASDPSWGPL 439 >gi|254429692|ref|ZP_05043399.1| Tol-Pal system beta propeller repeat protein TolB [Alcanivorax sp. DG881] gi|196195861|gb|EDX90820.1| Tol-Pal system beta propeller repeat protein TolB [Alcanivorax sp. DG881] Length = 434 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 98/441 (22%), Positives = 201/441 (45%), Gaps = 8/441 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + K+ + + L+ + + A + + V IA F VS Sbjct: 1 MQQACKRKVWTQISIALMAALWMVNAQAELLIKVTEGRVDAVPIAVVPFDGAQNAPEDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 ++V DL RS F + + + N + ++D+ LG + ++TG + + V Sbjct: 61 QIVQADLHRSGQFKPLPPEDMLSRPRNEQEMI-YRDFKVLGTEYVITGSMKAQETGGYEV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L+DV +K+++ + + + R +AH ISD IY+ +TG G F+++IL+V+ + Sbjct: 120 SYALFDVARQKKLMSETYRPPESQLRDVAHAISDRIYEQLTGIPGAFSTKILYVTHNRH- 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L D DG + + S++ I P +SP+ +K+AY +++D+ +Y+ Sbjct: 179 DANPYQLQYADADGHRVTTILRSKEPI-MSPTWSPDGRKIAYVSFEDQGRPAIYIHSLAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 +++ +F + AP +S +G++ +++ +D +IY ++L + RLTN I+ Sbjct: 238 TE-REKVSSFSGINGAPDWSPDGQKLALTLSRDGNPEIYMLNLSTKGLTRLTNNYGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + PD +VF S R G Q+Y + N +R+S + V +P G + + Sbjct: 297 PRWLPDGEHLVFTSSRSGGPQIYKLNINDKSVRRVSFQGAYNARSDV-TPDGRYLVYVHR 355 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 F +GV ++ ++P+ +P+G +I+ + G + ++ ++GR Sbjct: 356 RNGNFNVGVQDLQRGTFNIVTRTDMDESPSVAPNGSMVIYGTQHGGTGVLE--AVSIDGR 413 Query: 427 -NETLINTPAYASDPQWVGFM 446 L + +P W F+ Sbjct: 414 VKVELPSKEGEVREPAWSPFL 434 >gi|91205083|ref|YP_537438.1| translocation protein TolB [Rickettsia bellii RML369-C] gi|157827580|ref|YP_001496644.1| translocation protein TolB [Rickettsia bellii OSU 85-389] gi|119371058|sp|Q1RJW5|TOLB_RICBR RecName: Full=Protein tolB; Flags: Precursor gi|166229987|sp|A8GXK7|TOLB_RICB8 RecName: Full=Protein tolB; Flags: Precursor gi|91068627|gb|ABE04349.1| TolB protein precursor [Rickettsia bellii RML369-C] gi|157802884|gb|ABV79607.1| translocation protein TolB precursor [Rickettsia bellii OSU 85-389] Length = 444 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 159/444 (35%), Positives = 243/444 (54%), Gaps = 19/444 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQR 75 ++ I F + +A + P IA F S + +G ++ +V+S DL+ Sbjct: 4 IIYCILLLFSFNSYALETINIEHGKADPTPIAVNNFEADSASDNTVGHEIVKVISNDLKL 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +F+ IS SF ++ T P F W + A +LV G V K +L++ F LWD Sbjct: 64 CGLFHPISSASFIEEKTGIGYKPLFAAWRQINASLLVNGAVKKLENGKLKISFILWDTLL 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+S+I++V+ES + + Sbjct: 124 EKQLGGEVLELPENLWRRAAHKIADKIYEKITGDTGYFDSKIIYVAESGPDLKKVKRIAL 183 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DGAN RY+T + ++ PRFS + K+ Y +Y + VY D + + +G+ Sbjct: 184 MDYDGANNRYITDGKS-LVLTPRFSGSADKIFYVSYATKRRTLVYEKDLKTGKES-IVGD 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + APRF+ +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 242 FAGISFAPRFAPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGRR 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKF 371 IVF SDR G QLY+M S+GS+ +RIS SY P WSP+GD IAFTK G+ F Sbjct: 302 IVFNSDRNGVPQLYIMNSDGSNVQRISFGG-GSYMAPSWSPRGDYIAFTKIIRGSEGKTF 360 Query: 372 AIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSIDL 423 IGVMK D + ER++ +++P WSP+GR ++F+ +++Y+IDL Sbjct: 361 NIGVMKPYPQDDENSERVIASGYLVESPCWSPNGRVIMFAKGWPSNGKSSGKNRIYAIDL 420 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 G NE I TP ASDP+W ++ Sbjct: 421 TGHNEREIKTPGDASDPEWSNLLN 444 >gi|157964377|ref|YP_001499201.1| translocation protein TolB [Rickettsia massiliae MTU5] gi|166988078|sp|A8F168|TOLB_RICM5 RecName: Full=Protein tolB; Flags: Precursor gi|157844153|gb|ABV84654.1| TolB protein precursor [Rickettsia massiliae MTU5] Length = 444 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 162/445 (36%), Positives = 250/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSFASYALETINIEHGRADPTPIAVNKFNADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEILEVPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESNSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRALVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ ++ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAQNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITRGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ + +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFTKGWPSRAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|114771186|ref|ZP_01448606.1| translocation protein TolB precursor [alpha proteobacterium HTCC2255] gi|114548111|gb|EAU50998.1| translocation protein TolB precursor [alpha proteobacterium HTCC2255] Length = 441 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 168/441 (38%), Positives = 255/441 (57%), Gaps = 12/441 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHA-FVKVATNSANYSPVSIAFTKFVSID----ELGGKVSE 67 +KI + L+ + S + + P+ IA ++F +I + +++ Sbjct: 5 IKIVIIGLMFFMSKVLTLSAETKPLMIEITQGIIKPMPIALSQFTAIGDTTPQYVDQITS 64 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ DL S +F I + + TN ++ +F DW + L+TG V +G D+L ++ Sbjct: 65 VIMADLVGSGLFREIPRSAHVSANTNFNNPVKFSDWRVINVDALITGSVNIQG-DKLILQ 123 Query: 128 FRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRL+DV +K + G +F +S +WR++AH ISD +Y +TGE F+SR++++SE Sbjct: 124 FRLFDVFAQKPLGEGLQFQASIGNWRRMAHKISDAVYSRLTGEAAYFDSRVVYISEQGPK 183 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K L +MD DGAN R+LT D I+ PRFSPN +++ Y +Y+ + +VYLM+ Sbjct: 184 NARKKRLTIMDYDGANSRFLTDDND-IVLAPRFSPNNEEIVYTSYETG-VPKVYLMNVDT 241 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + M APRFS +G+ ++S+ DIYSV L+S RLT+ I+ + Sbjct: 242 LNK-RVLDDQPGMTFAPRFSPDGRNVVMSLTDRGNTDIYSVVLESRRKTRLTSGPSIDTA 300 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD QIVFESDR G++Q+Y+M S+G D RIS K SY PVWSP+GD+IAFTK Sbjct: 301 PSFSPDGKQIVFESDRGGRQQIYIMSSSGGDATRISFGK-GSYGTPVWSPRGDMIAFTKI 359 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNG 425 S +F IGVM+ DGS ERLL + PTWSP+GR ++F R+ G G +++S+D+ G Sbjct: 360 SQGRFHIGVMRTDGSNERLLTASFLDEGPTWSPNGRVIMFFRESAGTNGAPEIFSVDVTG 419 Query: 426 RNETLINTPAYASDPQWVGFM 446 RN + T SDP W G + Sbjct: 420 RNLKRVKTIQNGSDPSWSGLL 440 >gi|86139146|ref|ZP_01057716.1| translocation protein TolB precursor [Roseobacter sp. MED193] gi|85823990|gb|EAQ44195.1| translocation protein TolB precursor [Roseobacter sp. MED193] Length = 446 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 242/426 (56%), Gaps = 10/426 (2%) Query: 26 GFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNL 81 G + + +++ P+ A F++ EL +++ V++ DL + +F Sbjct: 23 GSAAQAQNGPLRIEITDGVIEPLPYAVPSFLAETPAAAELANQITRVIAADLSGTGLFRE 82 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-I 140 I + +++ ++ RF DW ++ AQ L+TG V GK +L V FR +DV ++ Sbjct: 83 IPATAHISTVSDFNAPVRFADWKAVNAQALITGSVSVNGK-QLTVRFRGYDVFADNELGA 141 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G +F + WR++AH ++D IY ITGE G F+SR++FVSE+ + L +MD DG Sbjct: 142 GLQFSGTTDGWRRMAHKVADAIYSRITGESGYFDSRVVFVSETGPKNDRRKRLAIMDYDG 201 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 A ++YLT S ++ PRFSP +V Y +Y+ +++++D + + M Sbjct: 202 AGVQYLTNS-SALVLAPRFSPTGDRVLYTSYESG-FPQIHVLDVGKVQRRVLSADKGIMS 259 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 APRF+ +G + S + D+Y++D+ + A +RLT I + SYSPD SQIVFES Sbjct: 260 FAPRFAPDGNTVVYSQAEGGNTDLYTMDIATGARQRLTRAPSIETAPSYSPDGSQIVFES 319 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G QLYVM + G + +RIS K Y PVWSP+GDLIAFTK S +F IGVM+ DG Sbjct: 320 DRSGTPQLYVMPATGGEARRISFGK-GRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRLDG 378 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDLNGRNETLINTPAYASD 439 S+ERLL + P+WSP+GR ++F+R+ G G LYS+D+ GRN + TP ASD Sbjct: 379 SEERLLTASFLDEGPSWSPNGRVIMFTRETQGANGRALLYSVDILGRNLKPVRTPDGASD 438 Query: 440 PQWVGF 445 P W Sbjct: 439 PAWSPL 444 >gi|238650751|ref|YP_002916604.1| translocation protein TolB [Rickettsia peacockii str. Rustic] gi|259533880|sp|C4K1V5|TOLB_RICPU RecName: Full=Protein tolB; Flags: Precursor gi|238624849|gb|ACR47555.1| translocation protein TolB [Rickettsia peacockii str. Rustic] Length = 444 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 163/445 (36%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVTKLESGKFQISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLVGEILEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRVLVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ +K+++ID Sbjct: 360 FNIGIMKACPQDDKNSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|229586559|ref|YP_002845060.1| translocation protein TolB [Rickettsia africae ESF-5] gi|259533877|sp|C3PN07|TOLB_RICAE RecName: Full=Protein tolB; Flags: Precursor gi|228021609|gb|ACP53317.1| TolB protein precursor [Rickettsia africae ESF-5] Length = 444 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 163/445 (36%), Positives = 250/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + +V F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKVSFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEMLEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRVLVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + E+++ +++P WSP+GR ++F+ +K+++ID Sbjct: 360 FNIGIMKACPQDDENSEKIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|34580657|ref|ZP_00142137.1| tolB protein precursor [Rickettsia sibirica 246] gi|28262042|gb|EAA25546.1| tolB protein precursor [Rickettsia sibirica 246] Length = 444 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 164/445 (36%), Positives = 250/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFDADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + +V F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFKVSFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEMLEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRVLVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISF-GSGSYATPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|254464281|ref|ZP_05077692.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales bacterium Y4I] gi|206685189|gb|EDZ45671.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales bacterium Y4I] Length = 441 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 156/417 (37%), Positives = 238/417 (57%), Gaps = 10/417 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVS----EVVSKDLQRSDVFNLISQDSFKQK 90 +++ + P+ A FV + + V++ DL + +F + + K Sbjct: 27 PLRIEIDQGVIEPLPYAVPDFVPETPAAAEYAAEIARVIASDLSGTGLFREVPASAHISK 86 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI-IGKKFFSSPA 149 +T D +F DW ++ AQ L+TG V G L V FR +DV K++ +F + Sbjct: 87 VTAFDGPVKFADWKAVNAQALITGAVSVTGNG-LTVRFRGYDVFAEKELETALQFTGTTD 145 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR++AH ++D IY ITGE G F+SR+++VSES + L VMD DGAN++YLT S Sbjct: 146 GWRRMAHKVADAIYSEITGESGYFDSRVVYVSESGPKNDRRKRLAVMDYDGANVQYLTNS 205 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ PRFSP +V Y +Y+ +++++D + +M APRF+ +G Sbjct: 206 AS-IVLAPRFSPAGDRVLYTSYESG-FPQIHVLDVGQVQRKVLSSGDGTMSFAPRFAPDG 263 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + + S + D++++D+++ A RLT+ I + S+SPD SQIVFESDR G +QLY Sbjct: 264 RTIVYSQTQGGNTDLFAMDIETGAKTRLTSAPSIETAPSFSPDGSQIVFESDRSGSQQLY 323 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM + G + +RIS E Y PVWSP+GD++AFTK + +F IGVM+ DGS+ERLL Sbjct: 324 VMPAGGGEARRISF-GEGRYGTPVWSPRGDMVAFTKQNKGRFHIGVMRTDGSEERLLTAS 382 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSK-LYSIDLNGRNETLINTPAYASDPQWVGF 445 + PTW+P+GR ++F+R+ G +G LYS+D+ GRN + TP ASDP W Sbjct: 383 FLDEGPTWAPNGRVIMFTRESQGSSGRALLYSVDITGRNLKPVKTPDGASDPSWSPL 439 >gi|67458884|ref|YP_246508.1| translocation protein TolB [Rickettsia felis URRWXCal2] gi|75536675|sp|Q4UM77|TOLB_RICFE RecName: Full=Protein tolB; Flags: Precursor gi|67004417|gb|AAY61343.1| TolB protein precursor [Rickettsia felis URRWXCal2] Length = 444 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 164/445 (36%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F +A + P IA KF + D +G V +V+S DL+ Sbjct: 4 IIYFILSLLFSFKGYALETINIEHGRADPTPIAVNKFNADSSADDVVGHDVVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K +L++ F LWD Sbjct: 64 LSGLFRPISSASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKLKISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ + WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEILEAPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESTSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRALVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFSGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYTAPSWSPRGDYIAFTKITRGAEGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ + +K+++ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSRAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIITPADASDPEWSGVLN 444 >gi|126737227|ref|ZP_01752962.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6] gi|126721812|gb|EBA18515.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6] Length = 445 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 164/447 (36%), Positives = 255/447 (57%), Gaps = 13/447 (2%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIH---AFVKVATNSANYSPVSIAFTKF----VSIDE 60 + + L+LVL G F S +++ P+ A F + E Sbjct: 1 MRSSSTSLAAGLMLVLAGLFAAASAQAQSGPLRIEITDGVIEPLPYAAPSFIADNAAAAE 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 L +++ VV+ DL + +F + + K+++ ++ RF DW ++ AQ L+TG V +G Sbjct: 61 LAREITRVVASDLSGTGLFREVPASAHISKVSDFNAPVRFADWKAVNAQALITGSVSAQG 120 Query: 121 KDRLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 ++L V FR +DV K++ G +F + WR++AH ++D IY ITGE G F+SR+++ Sbjct: 121 -NQLTVRFRGYDVFAEKELGSGLQFNGTKEGWRRMAHKVADAIYSRITGESGYFDSRVVY 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VSE+ + L +MD DGAN++YLT S ++ PRFSP +V Y +Y+ ++ Sbjct: 180 VSETGPKNDRRKRLAIMDYDGANVQYLTDS-SALVLAPRFSPTGDRVLYTSYESG-FPQI 237 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 +++D + + M APRF+ +G+ + S D++++D+ + + +RLT+ Sbjct: 238 HVLDVGRVQRRVLSADQGIMTFAPRFAPDGRTVVYSQTAGGNTDLFTMDIANGSRKRLTS 297 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I + S+SPD SQIVFESDR G +QLYVM ++G + +RIS K Y PVWSP+GD Sbjct: 298 APSIETAPSFSPDGSQIVFESDRSGSQQLYVMPASGGEARRISFGK-GRYGTPVWSPRGD 356 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-L 418 LIAFTK S +F IGVM+ DGS+ERLL + P+WSP+GR ++F+R+ G G L Sbjct: 357 LIAFTKQSKGRFHIGVMRTDGSEERLLTASFLDEGPSWSPNGRVIMFTRETQGANGRALL 416 Query: 419 YSIDLNGRNETLINTPAYASDPQWVGF 445 YS+D+ GRN + TP ASDP W Sbjct: 417 YSVDILGRNLKPVRTPDGASDPAWSPL 443 >gi|255262012|ref|ZP_05341354.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium sp. R2A62] gi|255104347|gb|EET47021.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium sp. R2A62] Length = 441 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 162/441 (36%), Positives = 249/441 (56%), Gaps = 11/441 (2%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDE----LGGKVS 66 + L + ++ +G A + + P+ A F + ++ + +S Sbjct: 3 RVLTCLMVGVLTLGVLIAQGARAQPLSITITDGVIEPLPFAVPSFQAENQSAAQVAADLS 62 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+++DL + +F I +F +I+ + +F DW ++ Q LVTG V G D+L V Sbjct: 63 RVIAEDLTGTGLFRQILASAFISQISAFSAPIQFADWRAINTQALVTGVVSVNG-DQLTV 121 Query: 127 EFRLWDVKDRKQI-IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 +FRL+DV ++ G++ + + WR++AH +SD +Y ITGE G F+SR++FVSE+ Sbjct: 122 KFRLYDVFSGAELGAGQQLAGTVSGWRRMAHKVSDQVYSRITGEGGYFDSRVVFVSETGP 181 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + L +MD DGAN+++LT S I+ PRFSPN +V Y +Y+ R+ ++D Sbjct: 182 KNDRRKRLAIMDYDGANVQFLTDSAS-IVLAPRFSPNGDRVLYTSYETG-FPRINILDVA 239 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + M +PRFS +G++ + S+ DIY DL S + RLT+ I Sbjct: 240 SVGRQQLATADGEMAFSPRFSRDGRQVIYSIANGGNTDIYRSDLASGSNARLTSAPSIET 299 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + S+SPD SQIVFESDR G +QLY+M ++G + +RIS + Y PVWSP+GDL+AFTK Sbjct: 300 APSFSPDGSQIVFESDRSGTQQLYIMSASGGEPRRISF-GDGRYGTPVWSPRGDLVAFTK 358 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLN 424 + +F IGVM+ DGS+ERLL + PTWSP+GR ++F+R+ G D LYS+D+ Sbjct: 359 QNAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGADGAPALYSVDIT 418 Query: 425 GRNETLINTPAYASDPQWVGF 445 GRN + T ASDP W Sbjct: 419 GRNLKRVTTSNAASDPSWGPL 439 >gi|157828282|ref|YP_001494524.1| translocation protein TolB [Rickettsia rickettsii str. 'Sheila Smith'] gi|166229989|sp|A8GRJ1|TOLB_RICRS RecName: Full=Protein tolB; Flags: Precursor gi|157800763|gb|ABV76016.1| translocation protein TolB precursor [Rickettsia rickettsii str. 'Sheila Smith'] Length = 444 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 162/445 (36%), Positives = 252/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFYADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFQISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLVGEILEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRVLVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGT 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK + + ER++ +++P WSP+GR ++F+ +K+++ID Sbjct: 360 FNIGIMKACPQDNKNSERIITSGYLVESPCWSPNGRVIMFAKGWPSSSKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|165932986|ref|YP_001649775.1| translocation protein TolB [Rickettsia rickettsii str. Iowa] gi|189035986|sp|B0BWZ3|TOLB_RICRO RecName: Full=Protein tolB; Flags: Precursor gi|165908073|gb|ABY72369.1| TolB [Rickettsia rickettsii str. Iowa] Length = 444 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 162/445 (36%), Positives = 252/445 (56%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF----VSIDELGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + D LG + +V+S DL+ Sbjct: 4 IIYFILSLLFSVTSYALETINIEHGRADPTPIAVNKFYADNSAADVLGHDMVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K + ++ F LWD Sbjct: 64 LSGLFRPISAASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKFQISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLVGEILEVPKNLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRVLVYEKDLKTGKES-VVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 DFPGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGT 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYAAPSWSPRGDYIAFTKITKGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK + + ER++ +++P WSP+GR ++F+ +K+++ID Sbjct: 360 FNIGIMKACPQDNKNSERIITSGYLVESPCWSPNGRVIMFAKGWPSSAKAPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TPA ASDP+W G ++ Sbjct: 420 LTGHNEREIMTPADASDPEWSGVLN 444 >gi|110833619|ref|YP_692478.1| tolB protein [Alcanivorax borkumensis SK2] gi|110646730|emb|CAL16206.1| tolB protein [Alcanivorax borkumensis SK2] Length = 440 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 101/447 (22%), Positives = 201/447 (44%), Gaps = 8/447 (1%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M + + KI + + + L+ + S A + + V IA F Sbjct: 1 MIGVLRMQQTCKRKIWMQISVALVTSLWMISAQAELLIKVTEGRVDAVPIAVVPFDGAKN 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 VS +V DL RS F + + N + ++D+ LG + ++TG + ++ Sbjct: 61 AEEDVSAIVQADLHRSGQFKPLPPQDMLSRPRNEQEMI-YRDFKVLGTEYVITGSMKRQE 119 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 V + L+DV +K+++ + + + R +AH ISD IY+ +TG G F+++IL+V Sbjct: 120 TGGYEVGYALFDVARQKKLMSETYRPPASQLRDVAHAISDRIYEQLTGIPGAFSTKILYV 179 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + + L D DG + + S + I P +SP+ +K+AY +++D+ +Y Sbjct: 180 THNRH-DANPYQLQYADADGHRVTTILRSNEPI-MSPTWSPDGRKIAYVSFEDQGRPGIY 237 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + + +++ +F + AP +S +G+ +++ +D +IY ++L + RLTN Sbjct: 238 IHNLATTE-REKVSSFSGINGAPDWSPDGQHLALTLSRDGNPEIYMLNLSTKVLTRLTNN 296 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ + PD +VF S R G Q+Y + N +R+S + V +P G Sbjct: 297 YGIDTEPRWLPDGEHLVFTSSRSGGPQIYKLNINDKSVRRVSFQGGYNARSDV-TPDGRY 355 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + + +GV ++ ++P+ +P+G +I+ + G L + Sbjct: 356 LVYVHRRNGNYNVGVQDLQRGTFNIVTRTDMDESPSVAPNGSMVIYGTQHGG--AGVLEA 413 Query: 421 IDLNGR-NETLINTPAYASDPQWVGFM 446 + ++GR L + +P W F+ Sbjct: 414 VSIDGRVKVELPSKEGEVREPAWSPFL 440 >gi|114570966|ref|YP_757646.1| TolB domain-containing protein [Maricaulis maris MCS10] gi|114341428|gb|ABI66708.1| TolB, N-terminal domain protein [Maricaulis maris MCS10] Length = 453 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 161/454 (35%), Positives = 246/454 (54%), Gaps = 21/454 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSE 67 + + LL LIG + ++V N P+ IA FV + G ++ Sbjct: 3 RIFVLFAALLALIGWSAASDAQEPLRVDVTQGNLDPMPIAVPDFVGASDEALRRGADITR 62 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV+ DL S +F + QD+F + I N D PRF DW + A L+ G V + RL V Sbjct: 63 VVANDLASSGLFAPVDQDAFIEDIANIDLRPRFSDWRVINADALLVGSVTIQEDGRLVVG 122 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE-SVVS 186 FRLWD + +Q++G ++ ++P +WR++AH ++D +Y+ +TGE G FN+RI++VSE + Sbjct: 123 FRLWDTRLEEQLLGLQYRTAPENWRRVAHRLADAVYERLTGETGYFNTRIVYVSEGRGIE 182 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L +MD+DGAN +LT R + P +SP+ Q++ Y ++ D YL + Sbjct: 183 GEPIRQLALMDQDGANPSFLTD-RSYMALLPNYSPSAQEITYVSFLDGQA-TTYLYNLET 240 Query: 247 DRAPKRIGNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R + L+ RFS +G +S++ DI+ DLQ+ +R Sbjct: 241 GRQEALFASGGAGAASQVDPDGQSLSARFSPDGSELAVSIETRSGHDIHLFDLQTRNLQR 300 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT ++ S++PD +IVF S R G QLYVM +GSD +RI+ Y PVWSP Sbjct: 301 LTQHPADDVEPSFAPDGERIVFSSARGGGSQLYVMNRDGSDVQRITF-GSGRYTTPVWSP 359 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGD 413 +GDLIAFTK G +F++GV++ DGS ER+L E + P WSP+GR L+F+R ++ Sbjct: 360 RGDLIAFTKQVGGQFSLGVVRADGSGIERILFEGYFVDTPAWSPNGRVLLFTRGEQRANG 419 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 T +++S+DL G N + T ASDP W ++ Sbjct: 420 TRYEIWSVDLAGFNLRRLATGGMASDPAWSPLIE 453 >gi|56697941|ref|YP_168312.1| translocation protein TolB [Ruegeria pomeroyi DSS-3] gi|67461891|sp|Q5LNU4|TOLB_SILPO RecName: Full=Protein tolB; Flags: Precursor gi|56679678|gb|AAV96344.1| TolB, putative [Ruegeria pomeroyi DSS-3] Length = 439 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 162/417 (38%), Positives = 242/417 (58%), Gaps = 10/417 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 +++ + P+ A FV +++ V++ DL S +F I ++ + Sbjct: 25 PLRITIDEGIIEPLPYAAPNFVPDSPAAAEYAAEIARVLAADLTGSGLFREIPSTAYISQ 84 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFFSSPA 149 +T+ D+ +F DW ++ AQ L+TG V G +RL V FRLWDV ++ G +F + Sbjct: 85 VTSFDAPVQFADWKAINAQALITGAVSVSG-NRLTVRFRLWDVFAGAELGSGLQFAGTTD 143 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR+++H ++D +Y ITGE G F+SR+ FVSES + L +MD DGAN++YLT S Sbjct: 144 GWRRMSHKVADAVYSRITGESGYFDSRVAFVSESGPKDQRRKRLAIMDYDGANVQYLTDS 203 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 I+ PRFSP +V Y +Y R++++D + +M APRFS +G Sbjct: 204 SS-IVLAPRFSPTGDRVLYTSY-QGGFPRIHILDVGQVQQRVLQSQDGTMSFAPRFSPDG 261 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + L S+ + D+Y++++ S + RLT+ I + SY+PD S+IVFESDR G QLY Sbjct: 262 QTVLFSLAQGGNTDLYAMNIASGQSTRLTSAPSIETAPSYAPDGSRIVFESDRSGTPQLY 321 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM + G + RIS + Y PVWSP+GDLIAFTK S +F IGVM+ DGS+ERLL Sbjct: 322 VMSAAGGEATRISF-GQGRYGTPVWSPRGDLIAFTKQSKGRFHIGVMRADGSEERLLTAS 380 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + PTWSP+GR ++F+R+ G +G + LYS+D++GRN + TP SDP W Sbjct: 381 FLDEGPTWSPNGRVIMFTRETQGASGRAALYSVDISGRNLRPVRTPDGGSDPSWSPL 437 >gi|254490151|ref|ZP_05103342.1| Tol-Pal system beta propeller repeat protein TolB [Methylophaga thiooxidans DMS010] gi|224464637|gb|EEF80895.1| Tol-Pal system beta propeller repeat protein TolB [Methylophaga thiooxydans DMS010] Length = 432 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 108/431 (25%), Positives = 219/431 (50%), Gaps = 11/431 (2%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSKDLQRSDVF 79 + L+ P HA + + + + + IA F + +SE+VS DL S F Sbjct: 9 IALLIALLPWPAHALLTIEITGGSEAALPIAIVPFGTEGFAPPEDLSEIVSNDLASSGRF 68 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + + + + + F DW L ++ L+ G+V + + +V+F+L+DV +Q+ Sbjct: 69 APLEKRDLISQPHESEQV-NFADWRLLRSEGLLIGKVSSQDGENYQVQFQLFDVYKAEQL 127 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDR 198 +GK++ + R + H I+D +Y+++TGEKG F++R+ FVS G + +L V D Sbjct: 128 VGKRYQVPASGLRNLGHQIADIVYETLTGEKGVFSTRLAFVSEMKNADGSKRYALQVSDA 187 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DGAN R + S I P ++P+ +++ Y ++++ VY+ R + +F Sbjct: 188 DGANPRTVLQSTQPI-LSPNWAPDGEQLTYVSFENGKA-EVYVQQLSSGRRNS-VASFEG 244 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIV 317 + AP +S +GK+ +++ K+ +IY ++L S R+T N+ I+ A + P +I+ Sbjct: 245 LNTAPAWSPDGKKLALTLSKNGNPEIYVMELASGNLSRVTHNSQAIDTEAVWMPSGREIL 304 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G+ Q+Y + ++G +R++ + + SP G +++ +F I V Sbjct: 305 FTSDRGGRPQIYRVDASGGRAERVTFEGGYNASA-DISPDGRMMSMVHSVNGRFHIAVQD 363 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++L + + ++P+++P+GR ++++ ++ G L ++ ++GR + + A Sbjct: 364 LQTGTVQVLTDTTGDESPSFAPNGRMILYATEQKGRGI--LAAVSVDGRIKQRLGESGSA 421 Query: 438 -SDPQWVGFMD 447 +P W F + Sbjct: 422 VREPAWSPFRN 432 >gi|119371033|sp|Q0VRJ2|TOLB_ALCBS RecName: Full=Protein tolB; Flags: Precursor Length = 434 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 100/441 (22%), Positives = 200/441 (45%), Gaps = 8/441 (1%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + KI + + + L+ + S A + + V IA F VS Sbjct: 1 MQQTCKRKIWMQISVALVTSLWMISAQAELLIKVTEGRVDAVPIAVVPFDGAKNAEEDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + + N + ++D+ LG + ++TG + ++ V Sbjct: 61 AIVQADLHRSGQFKPLPPQDMLSRPRNEQEMI-YRDFKVLGTEYVITGSMKRQETGGYEV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L+DV +K+++ + + + R +AH ISD IY+ +TG G F+++IL+V+ + Sbjct: 120 GYALFDVARQKKLMSETYRPPASQLRDVAHAISDRIYEQLTGIPGAFSTKILYVTHNRH- 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L D DG + + S + I P +SP+ +K+AY +++D+ +Y+ + Sbjct: 179 DANPYQLQYADADGHRVTTILRSNEPI-MSPTWSPDGRKIAYVSFEDQGRPGIYIHNLAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 +++ +F + AP +S +G+ +++ +D +IY ++L + RLTN I+ Sbjct: 238 TE-REKVSSFSGINGAPDWSPDGQHLALTLSRDGNPEIYMLNLSTKVLTRLTNNYGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + PD +VF S R G Q+Y + N +R+S + V +P G + + Sbjct: 297 PRWLPDGEHLVFTSSRSGGPQIYKLNINDKSVRRVSFQGGYNARSDV-TPDGRYLVYVHR 355 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +GV ++ ++P+ +P+G +I+ + G L ++ ++GR Sbjct: 356 RNGNYNVGVQDLQRGTFNIVTRTDMDESPSVAPNGSMVIYGTQHGG--AGVLEAVSIDGR 413 Query: 427 -NETLINTPAYASDPQWVGFM 446 L + +P W F+ Sbjct: 414 VKVELPSKEGEVREPAWSPFL 434 >gi|114327770|ref|YP_744927.1| translocation protein TolB [Granulibacter bethesdensis CGDNIH1] gi|114315944|gb|ABI62004.1| tolB protein [Granulibacter bethesdensis CGDNIH1] Length = 452 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 244/445 (54%), Gaps = 10/445 (2%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M LR + L + + + A +P+ IA F + Sbjct: 16 MGLRRRDMLGFSAAALAAPLGFAGPAMAQQAAGQSAVIDVDRARTAPIPIAIPSFGGGSQ 75 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 L ++ V++ DL+RS +F +++ ++ Q+ +P FQ W ++GAQ LVTG V G Sbjct: 76 LAQDMAGVIAADLERSGLFRIVAPGAYPQQ---SGDVPNFQSWGAIGAQALVTGNVSGSG 132 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 +RVEFRLWDV ++QI G + ++ +WR+I+H I+D IY+ + GEKG F++RI++V Sbjct: 133 -GSVRVEFRLWDVLPQQQIQGTAYTTTSGNWRRISHIIADVIYERMLGEKGYFDTRIVYV 191 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S + L VMD+D AN RYLT ++ PRF P + ++ + +Y + RVY Sbjct: 192 SNTGPRTNRTKRLAVMDQDSANNRYLTDG-SWMVLTPRFHPTRDEIVFMSYANNRP-RVY 249 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + + +G + M APRFS +G ++S+ + DIY V L +LTN+ Sbjct: 250 TFNLATGGQ-RMLGEWPGMTFAPRFSPDGSSVVMSMTRGGGSDIYVVGLGGGGHRQLTNS 308 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S +SPD SQIVF SDR G +QLYVM ++GS +RIS Y PVWSP+GDL Sbjct: 309 GSIDTSPCFSPDGSQIVFNSDRGGDQQLYVMGADGSGVRRISF-GSGRYATPVWSPRGDL 367 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 IAFT+ + IGVMK DGS ER+L + +++ PT+ P+GR L+F G KL S Sbjct: 368 IAFTRLGSSAWNIGVMKPDGSGERILAQGYDVEGPTFCPNGRVLMFWSASGGRQ--KLVS 425 Query: 421 IDLNGRNETLINTPAYASDPQWVGF 445 +D+ G NE + TP ASDP W Sbjct: 426 VDITGFNERPVPTPTDASDPAWSPL 450 >gi|292490341|ref|YP_003525780.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus halophilus Nc4] gi|291578936|gb|ADE13393.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus halophilus Nc4] Length = 430 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 122/437 (27%), Positives = 217/437 (49%), Gaps = 10/437 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG-GKVSEVV 69 + MK+ +L + I ++ A + + + + IA F S + V+ VV Sbjct: 1 MGMKVWSKILWLWILLVPTQNVSAVLTIEITGGTEAALPIAIVPFGSQGGIPPEDVAAVV 60 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DL RS F + + + I F DW LG++ LV G V G DR V F+ Sbjct: 61 AADLARSGRFAPLPEKDLLSRPHRASEI-EFHDWRRLGSEGLVIGEVTHLGADRYGVRFQ 119 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGI 188 L+D+ +Q++G+++ R +AH I+D IY+++TGEKG F +RI FV+ S V G Sbjct: 120 LFDIYKAEQLVGRRYQVPATGLRHLAHQIADLIYETLTGEKGAFTTRIAFVTVSKAVDGA 179 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + SL V D DG N + S++ I P +SP+ K+AY +++ + V + + R R Sbjct: 180 KEYSLQVADVDGHNPHTILQSKEPI-MSPVWSPDGTKLAYVSFERKRS-EVIVQELRTGR 237 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + +F + AP +S +G++ + + K+ +IY +DL + RLT I+ + Sbjct: 238 -RQSVASFPGINSAPDWSPDGRKLALVLSKEGNPEIYILDLATRRLTRLTRNASIDTEPT 296 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++PD IVF SDR G+ QLY + ++G +R++ D + ++P G +A Sbjct: 297 WAPDGRSIVFTSDRGGRPQLYQISASGGQAQRLTFDGTYNASA-SFAPDGQRLALVHGDK 355 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 +F I V+ ++L E ++P+++P+GR ++++ G G L ++ +GR Sbjct: 356 GQFHIAVLDLASKDLQVLTETRMDESPSFAPNGRMILYATS--GPQGGALAAVSTDGRVR 413 Query: 429 TLINTPAY-ASDPQWVG 444 + +P W Sbjct: 414 QRLAQKGDEVREPAWSP 430 >gi|15604171|ref|NP_220686.1| translocation protein TolB [Rickettsia prowazekii str. Madrid E] gi|6647892|sp|Q9ZDM5|TOLB_RICPR RecName: Full=Protein tolB; Flags: Precursor gi|3860863|emb|CAA14763.1| TOLB PROTEIN PRECURSOR (tolB) [Rickettsia prowazekii] gi|292571902|gb|ADE29817.1| TolB protein precursor [Rickettsia prowazekii Rp22] Length = 443 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 170/444 (38%), Positives = 248/444 (55%), Gaps = 20/444 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQR 75 ++ I F + +A + P IA KF + +G V +V+S DL+ Sbjct: 4 IVYFILTLFSLTSYALETINIEHGRVDPTPIAVNKFNADSSNNDLVGRDVVKVISNDLKI 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F IS SF ++ T P F W + A +LV G V +L++ F LWD Sbjct: 64 SGLFRPISSASFIEEQTGIKYKPLFAAWRQINASLLVNGEVKTLENGKLKISFILWDTFL 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 KQ+ G F WR+ AH I+D IY+ ITG+ G F+++I++VSES V IK + + Sbjct: 124 EKQLTGALFEVPTKLWRRAAHKIADKIYEKITGDPGYFDTKIVYVSESTVLPKIK-RIAL 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DGAN +YLT + ++ PRF+ + K+ Y +Y + VY D + + +G+ Sbjct: 183 MDYDGANNKYLTNGKS-LVLTPRFAHSADKIFYVSYATKSRALVYEKDLKTGKES-VVGD 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + APRFS +GK+A++S+ K+ + IY +DL + +LTN IN S SYSPD + Sbjct: 241 FVGISFAPRFSPDGKKAVMSIAKNGSTHIYEIDLATKQLNKLTNGFGINTSPSYSPDGKK 300 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEK-F 371 IVF SD+ G QLY+M S+GSD +RIS SY P WSP+GD IAFT + GEK F Sbjct: 301 IVFNSDKNGVPQLYIMNSDGSDVQRISF-GVGSYASPSWSPRGDYIAFTKIIRQDGEKTF 359 Query: 372 AIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSIDL 423 IG+MK G+ ER++ + +P WSP+GR ++FS K + +K+++IDL Sbjct: 360 NIGIMKAYPQDHGNSERIITSGYLVDSPCWSPNGRVIMFSKGWPSKANAPGKNKIFTIDL 419 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 G NE I TPA ASDP+W G ++ Sbjct: 420 TGHNEREIITPADASDPEWSGILN 443 >gi|239995973|ref|ZP_04716497.1| Periplasmic component of the Tol biopolymer transport system [Alteromonas macleodii ATCC 27126] Length = 451 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 111/455 (24%), Positives = 203/455 (44%), Gaps = 31/455 (6%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 L L + LI F + A +++ + P+ + K+ + G +S+VV DL Sbjct: 3 KLGLWIALITMAFSAKVFASLEIVITEGVDSARPIGVVPFKWKGQGSMPGDISKVVMADL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS FN +S D Q + + F W +LG ++ G + +G DR V + L DV Sbjct: 63 MRSGKFNPVSVDKMPQYPETAEQVS-FTAWATLGVDTVLVGSIEPQGGDRYLVSYELIDV 121 Query: 134 KDRKQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 + + ++ + +R+ AH ISD +Y+ +TG +G F Sbjct: 122 LKGQVDNGQAKVLKDGNLVSSNDHVLAARQAVINGRDFRQYAHRISDIVYEKLTGVRGAF 181 Query: 174 NSRILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 ++I +V + K L + D DG N L S + L P +SP+ +K+AY +++ Sbjct: 182 LTKIAYVIVRDRDTVEKPYQLVIADYDGENETRLL-SSPEPLMSPVWSPDGEKLAYVSFE 240 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + ++++ + RI +F + +P FS +GK+ + + KD ++Y +DL + Sbjct: 241 NRRP-QIFIQNIYTSE-RTRITDFPGINSSPVFSPDGKQLAMVLSKDGNPELYVMDLATK 298 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 R+T I+ ++ PD S ++F S+R GK Q+Y + N +R++ E + Sbjct: 299 NLRRVTRNRAIDTEPAWLPDGSGLIFSSERGGKPQIYSVNLNSGKVRRVTFVGEQNLGG- 357 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G + + + I DG ++L ++P+ +P+G +I+S +G Sbjct: 358 TISPDGKQMIMVNQTNGNYHIAKQSLDGGSPQVLTRTYLDESPSVAPNGSMIIYSTLHEG 417 Query: 413 DTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + L+GR + L P W F+ Sbjct: 418 TQVLSL--VSLDGRFKARLPAANGQVKSPSWSPFL 450 >gi|197284481|ref|YP_002150353.1| translocation protein TolB [Proteus mirabilis HI4320] gi|194681968|emb|CAR41400.1| TolB protein [Proteus mirabilis HI4320] Length = 432 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 110/446 (24%), Positives = 200/446 (44%), Gaps = 19/446 (4%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGG 63 + + LN+ L +L V T +A V++ P+ + K+ ++ Sbjct: 1 MMKQALNVIFGLLILCV------TTLANAEVRIEITQGVNTARPIGVVPFKWEGTGQMPE 54 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++ V++ DL+ S FN I + Q+ + + W +LG +V GRV + Sbjct: 55 DIAGVIAADLRNSGKFNPIDMNRLPQQPVTASEV-QPALWTALGIDSVVVGRVQPSADGQ 113 Query: 124 LRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L DV + ++ S R AHT SD+I++ +TG +G F +RI +V Sbjct: 114 YVVSYQLVDVAGSPGAVLAQSEYKISNKWLRYAAHTASDEIFEKLTGIRGAFRTRIAYVV 173 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + G L V D DG N + S Q L P +SP+ K+AY T++ + Sbjct: 174 VTN-GGAYPYELRVSDYDGFNQDRVYRS-SQPLMSPAWSPDGAKLAYVTFESGQ--SALV 229 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T ++I +F AP FS +G + ++ K ++++Y +DL S ++TN Sbjct: 230 VQTLATGEVRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLASGNMTQVTNGR 289 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++ PD +V+ SD+ G+ Q+Y + NG +RI+ + + + +P SP G + Sbjct: 290 SNNTEPTWMPDGQTLVYTSDQGGRPQIYKININGGTPERITWEGKQNQ-NPAVSPDGSFL 348 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + I + + + L + + P+ +P+G +I+S + G+ L + Sbjct: 349 VMVSSESGRQHIAKQDLETNAVQYLTDTFLDETPSIAPNGTMVIYSSTQG--LGTILRLV 406 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W FM Sbjct: 407 STDGRFKARLPATDGQVKSPAWSPFM 432 >gi|119383438|ref|YP_914494.1| translocation protein TolB [Paracoccus denitrificans PD1222] gi|119373205|gb|ABL68798.1| TolB, N-terminal domain protein [Paracoccus denitrificans PD1222] Length = 461 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 150/446 (33%), Positives = 241/446 (54%), Gaps = 11/446 (2%) Query: 9 EELNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKV 65 + K L ++ L G + A +++ P+ A +F G + Sbjct: 18 RNMLRKFLLTSVMALAGFGLAAPVLAQDGPLRIEITDGVIEPMPFAIARFHDEGGAGEYL 77 Query: 66 SEV---VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 ++V ++ DL + +F I + + + ++ ++DW ++ AQ L+TG V +G Sbjct: 78 AQVQNLIAADLTGTGLFREIPASAHIARPESFEAPVSYEDWKAINAQALITGSVKVQGGK 137 Query: 123 RLRVEFRLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 + +FRL+DV + + G +F +S +WR+ AH +D +Y +TGE F+SR+ FV Sbjct: 138 VVV-KFRLFDVFAGQPLGDGMQFDASTGNWRRAAHKAADQVYSRLTGEGPYFDSRVAFVQ 196 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E+ + + +MD DGAN+++LT ++ +PRFSP+ ++ Y +Y + + Sbjct: 197 ETGPKDARRKRIGIMDYDGANVKWLTDD-STLVLKPRFSPDGSRLLYTSYATGFPQAMMM 255 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + G +M +PRFS +G+ + S++++ DIY +D + A LTN Sbjct: 256 DVNSLAARQLGAGQQGTMSFSPRFSPDGRWIVYSLEQNGNTDIYQMDAATGAQRALTNAP 315 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I S SYSPD QIVFESDR G QLYVM +NG + +RIS E Y PVWSP+GD+I Sbjct: 316 SIETSPSYSPDGKQIVFESDRSGTPQLYVMGANGGEPRRISF-GEGRYGTPVWSPRGDMI 374 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDGDTGSKLYS 420 AFT+ G KF IGVM+ DGS+E++L E + PTW+P+GR ++F+R GD +L+S Sbjct: 375 AFTRQVGGKFHIGVMRTDGSEEKMLTESFLDEGPTWAPNGRVVMFTRVTPGGDGQPRLHS 434 Query: 421 IDLNGRNETLINTPAYASDPQWVGFM 446 +D+ GRN + ASDP W + Sbjct: 435 VDITGRNMRPVKINGAASDPDWGPLL 460 >gi|307823677|ref|ZP_07653905.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacter tundripaludum SV96] gi|307734971|gb|EFO05820.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacter tundripaludum SV96] Length = 427 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 125/435 (28%), Positives = 227/435 (52%), Gaps = 11/435 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M +LL+ + F+ S +A + + S + I+ F + VS VV Sbjct: 1 MSFFRKILLIGLVSFYVPSSYAEMTIEITEGIESALPISVVPFGMQGASGVPVDVSFVVD 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + S K + +++ +F+DW +LG LV G+VI E + V+F+L Sbjct: 61 ADLGRSGYFKTLDKQSMPAKPSTAEAV-QFKDWQALGQNYLVIGQVI-EDHGQYNVQFQL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV +Q++G + SS A R+ AH ISD I++ +TG+KG F+ RI +++ S Sbjct: 119 FDVYKGEQLMGYRMTSSAAELRRTAHHISDLIFEKLTGKKGVFSGRIAYITSSRQGKQST 178 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + L V D DG N + + S + L P +SP+ +K+AY +++ + +Y+ Sbjct: 179 SKLQVSDADGFNAQTI-ASSVEPLMSPAWSPDGRKIAYVSFEKKSAA-IYIQTLATG-ER 235 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 R+ F + AP +S +G + +++ KD + DIY ++L + + +LT + I+ ++S Sbjct: 236 ARVAEFPGINGAPSWSPDGAKLALTLSKDGSPDIYILNLVTRSLTKLTKSFAIDTEPTWS 295 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S IVF SDR GK QLY+M S G ++KR++ + +SP G IA +G Sbjct: 296 PDGSHIVFTSDRGGKPQLYIMSSQGGEEKRLTFSGNYNARA-SFSPDGKSIAMVHGNGSD 354 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NET 429 + I VM ++ + + ++P+++P+G ++++ +K + L ++ L+G+ + Sbjct: 355 YRIAVMDMATKSVNVITDGRSDESPSFAPNGSMILYASRKG--SAGYLSAVSLDGKMQQK 412 Query: 430 LINTPAYASDPQWVG 444 L+ + +P W Sbjct: 413 LVFDSSEIREPAWSP 427 >gi|254420878|ref|ZP_05034602.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas sp. BAL3] gi|196187055|gb|EDX82031.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas sp. BAL3] Length = 457 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 167/449 (37%), Positives = 247/449 (55%), Gaps = 23/449 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF-----------VKVATNSANYSPVSIAFTKFVSIDEL 61 M++NL L + +S A V+V + P+ IA F + Sbjct: 1 MRLNLLLASAAVVAMSVSSAQAQGQTAPAQAGQPVEVEIDQGVLKPLQIAIVPFTG--DH 58 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G +S VVS +L+RS F ++ F + + P F W +GAQ ++ G V G Sbjct: 59 GADISNVVSGNLRRSGFFEPLNPAGFIETGLTLANAPNFPQWTQIGAQAVLYGGVTPRGD 118 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 RL V FRL+D + Q++ +F ++ WR+IAH ISD IYQ +TGE G F+SR++FVS Sbjct: 119 GRLDVGFRLYDPYRQCQLVSYQFTATQEQWRRIAHKISDVIYQRMTGETGFFDSRVVFVS 178 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS---PNQQKVAYATYDDEDILR 238 E N L + D+DG N YLT D+I+ PRFS P+ ++ Y +D R Sbjct: 179 EEGTQLNRINRLTIADQDGFNPTYLTQG-DEIIMSPRFSTSQPD--EITYVALG-KDYSR 234 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL + R + +G F +LAPRFS++G + S+ + DIY +DL+S RLT Sbjct: 235 IYLRNLTTGR-TESLGEFDGQVLAPRFSNDGNKIAFSIIRGGNTDIYVMDLRSRQLSRLT 293 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + I+ S S+SPD SQIVF SDR G+ +LYVM+++GS Q+ IS+ +Y P WSP G Sbjct: 294 SDPGIDTSPSFSPDGSQIVFNSDRSGQARLYVMRADGSGQRPISRGG-GTYTAPAWSPTG 352 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +LIAFTK G +F+ GVM DGS ER+L + P W+P+GR ++F+R+ G ++L Sbjct: 353 NLIAFTKSGGGRFSTGVMNADGSGERILSSSYFEEGPNWAPNGRYVMFARQTRG-GDTRL 411 Query: 419 YSIDLNGRNETLINTPAYASDPQWVGFMD 447 +++DL+GR +DP W +D Sbjct: 412 WTVDLSGRVVAQAGYNGRGTDPAWSPLLD 440 >gi|329904215|ref|ZP_08273698.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480] gi|327548111|gb|EGF32832.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480] Length = 421 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 117/435 (26%), Positives = 202/435 (46%), Gaps = 16/435 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK L L+G T+ HA ++V + + IA F +VS ++ D Sbjct: 1 MKKTFFSTLALLGLVLATAAHAQLRVDIAGVGANQIPIAIATFADESIAPAQVSAIIKAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F +I + + S + DW S GA LV G V + R V ++L D Sbjct: 61 LMRSGYFKIIDAGTMSET-----SEINYPDWKSRGADALVVGSVQRLADGRFDVRYKLLD 115 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + + R AH I+DDIY+ +TG +G F +RI +V++S + Sbjct: 116 MIKSAPLSALSLTAPEGRTRVTAHKIADDIYEKLTGVRGAFATRIAYVTKSG----KEYR 171 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG + S + I+ P +SP+ +VAY +++++ + VY+ + + R Sbjct: 172 LEVADADGEDTNVALRSNEPII-SPAWSPDGTRVAYVSFENKKPV-VYVQNL-VTRQRTV 228 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + N++ AP +S +G R I++ +D Y V+ RLT++ I+ +S D Sbjct: 229 LANYKGSNSAPSWSPDGNRLAIALSRDGLTQSYIVNADGTGLRRLTSSSGIDTEPQFSAD 288 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 I F SDR G Q+Y M +G D +R++ + P SP G +A+ F Sbjct: 289 GQSIYFTSDRSGGPQIYKMPVSGGDAQRVTFKGSYN-ISPRVSPDGKTLAYISRRDSAFQ 347 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLI 431 + M QE+ L + + ++P++SP+ + ++++ + G GS L + ++GR + L Sbjct: 348 LYAMDLANGQEQRLSDSAKDESPSFSPNSKYIMYATE-SGRRGS-LAVVSVDGRVKQRLT 405 Query: 432 NTPAYASDPQWVGFM 446 +P W F+ Sbjct: 406 TQAGDIREPTWGPFI 420 >gi|332993883|gb|AEF03938.1| translocation protein TolB [Alteromonas sp. SN2] Length = 451 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 111/452 (24%), Positives = 200/452 (44%), Gaps = 31/452 (6%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L + I F + A +++ + P+ + K+ L +SEV+ DL RS Sbjct: 6 LWIAAIAMVFSAKVFATLEIVITEGINSARPIGVVPFKWKGTGTLPSDISEVIMADLMRS 65 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F+ ++ Q D + + W SLG ++ G + EG D+ V ++L DV Sbjct: 66 GKFSPVATSKMPQMPETADEV-NYSAWASLGVDTVLVGSIEPEGTDKYLVSYQLVDVLKG 124 Query: 137 KQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + I ++ SP +R+ AH ISD +Y+ +TG +G F +R Sbjct: 125 QLDGGQSQVLKNGELVVSNEHVIAARQSIISPRDFRQYAHRISDVVYEKLTGVRGAFLTR 184 Query: 177 ILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I +V K L + D DG N L S + L P +SP+ +K+AY ++++ Sbjct: 185 IAYVIVRDRDAYEKPYQLVISDYDGENETRLL-SSPEPLMSPVWSPDGEKLAYVSFENRR 243 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++++ D + + +F + +P FS +GK+ + + KD +IY +DL + Sbjct: 244 P-QIFIQDIYTSKRTT-VTDFPGINGSPSFSPDGKQLAMVLSKDGNPEIYVMDLATKNLT 301 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R+T I+ S+ PD S ++F S+R GK Q+Y + N +R++ E + + Sbjct: 302 RVTRNRAIDTEPSWLPDGSGLIFSSERGGKPQIYSVNLNSRKVRRVTFVGEQNLGA-TLT 360 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 P G + + + I DG ++L ++P+ +P+G +I+S +G Sbjct: 361 PDGKQMVVVNQTNGNYHIAKQALDGGSPQVLTRTFLDESPSVAPNGSMIIYSTLHEGTQV 420 Query: 416 SKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + L+GR + L P W F+ Sbjct: 421 LSL--VSLDGRFKARLPAADGQVKSPSWSPFL 450 >gi|227356659|ref|ZP_03841045.1| TolB protein [Proteus mirabilis ATCC 29906] gi|227163167|gb|EEI48098.1| TolB protein [Proteus mirabilis ATCC 29906] Length = 431 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 109/439 (24%), Positives = 198/439 (45%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L ++ L+ T +A V++ P+ + K+ ++ ++ V++ Sbjct: 1 MKQALNVIFGLLILCVTTLANAEVRIEITQGVNTARPIGVVPFKWEGTGQMPEDIAGVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + + W +LG +V GRV + V ++L Sbjct: 61 ADLRNSGKFNPIDMNRLPQQPVTASEV-QPALWTALGIDSVVVGRVQPSADGQYVVSYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 DV + ++ S R AHT SD+I++ +TG +G F +RI +V + G Sbjct: 120 VDVAGSPGAVLAQSEYKISNKWLRYAAHTASDEIFEKLTGIRGAFRTRIAYVVVTN-GGA 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N + S Q L P +SP+ K+AY T++ ++ T Sbjct: 179 YPYELRVSDYDGFNQDRVYRS-SQPLMSPAWSPDGAKLAYVTFESGQ--SALVVQTLATG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 ++I +F AP FS +G + ++ K ++++Y +DL S ++TN N + Sbjct: 236 EVRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLASGNMTQVTNGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PD +V+ SD+ G+ Q+Y + NG +RI+ + + + +P SP G + Sbjct: 296 WMPDGQTLVYTSDQGGRPQIYKININGGTPERITWEGKQNQ-NPAVSPDGSFLVMVSSES 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I + + + L + + P+ +P+G +I+S + G+ L + +GR + Sbjct: 355 GRQHIAKQDLETNAVQYLTDTFLDETPSIAPNGTMVIYSSTQG--LGTILRLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W FM Sbjct: 413 ARLPATDGQVKSPAWSPFM 431 >gi|239947882|ref|ZP_04699635.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia endosymbiont of Ixodes scapularis] gi|239922158|gb|EER22182.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia endosymbiont of Ixodes scapularis] Length = 444 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 162/445 (36%), Positives = 248/445 (55%), Gaps = 20/445 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQ 74 ++ ++ F + +A + P IA KF + +G V +V+S DL+ Sbjct: 4 IIYFILSLLFSFTGYALETINIEHGRADPTPIAVNKFNADSSTDNVVGHDVVKVISNDLK 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S +F IS SF ++ T + P F W + A +LV G V K +L++ F LWD Sbjct: 64 LSGLFRPISSASFIEEKTGIEYKPLFAAWRQINASLLVNGEVKKLESGKLKISFILWDTL 123 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + Sbjct: 124 LEKQLAGEILEVPETLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIA 182 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +MD DGAN +YLT + ++ PRF+ + K+ Y +Y + VY D + + +G Sbjct: 183 LMDYDGANNKYLTNGKS-LVLTPRFARSADKIFYVSYATKRRALVYEKDLKTGKE-NVVG 240 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD Sbjct: 241 DFSGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGK 300 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEK 370 +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK + G+ Sbjct: 301 KIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYTAPSWSPRGDYIAFTKITRGDGGKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ + +K++ ID Sbjct: 360 FNIGIMKACPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSRAKAPGKNKIFVID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TP ASDP+W G ++ Sbjct: 420 LTGHNEREIITPTDASDPEWSGVLN 444 >gi|56551061|ref|YP_161900.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis ZM4] gi|241761363|ref|ZP_04759451.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753278|ref|YP_003226171.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|67461903|sp|Q5NR65|TOLB_ZYMMO RecName: Full=Protein tolB; Flags: Precursor gi|56542635|gb|AAV88789.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis ZM4] gi|241374270|gb|EER63767.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552641|gb|ACV75587.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 458 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 158/421 (37%), Positives = 226/421 (53%), Gaps = 15/421 (3%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDE----------LGGKVSEVVSKDLQRSDVFNLISQD 85 ++V P+ IA + LG +V+ V+S DL+ S +F Q Sbjct: 42 LRVDITGGISQPMPIAVPVMPTPSSVETLAGTTAVLGRQVASVISNDLKSSGLFTPSQQA 101 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 S + P++ W S GAQ LV G V G L V L+DV ++++ K F Sbjct: 102 SLHNVSFPEVTAPQYSYWLSSGAQALVQGFVQANGDGTLTVGCYLYDVFASQEMLHKGFV 161 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 PA WR+ AH +D +Y +TGE F+SRI+++SE+ L +MD+DGAN R+ Sbjct: 162 VKPADWRRAAHKCADAVYTRLTGEGPYFDSRIVYISETGPKNHRLKRLAIMDQDGANHRF 221 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT + ++ PRF+PNQQ V Y +Y + R+Y+ + + N + APRF Sbjct: 222 LTNGQS-MVLTPRFAPNQQTVTYLSY-VGNSPRIYVYTLGSG-HVRLVVNKPNTTFAPRF 278 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GK + S+ DIY V + RLT + I+ + S+SPD S+IVFESDR G Sbjct: 279 SPDGKTIVFSMSVAGNTDIYKVPVSGGQATRLTTSPGIDTAPSFSPDGSKIVFESDRSGS 338 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 +Q+Y+M ++GS+Q RIS Y PVWSP+GDLIAFTK G F +GVMK DGS E++ Sbjct: 339 QQIYIMNADGSNQNRISF-GSGRYATPVWSPRGDLIAFTKL-GGGFHVGVMKTDGSGEQI 396 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 L + P+WSP+GR + F R ++L+S+DL G NE I TP SDP W Sbjct: 397 LTNGWQDEGPSWSPNGRVIAFFRTARNSGHTELWSVDLTGVNERHIPTPLDGSDPSWGPL 456 Query: 446 M 446 + Sbjct: 457 L 457 >gi|152980804|ref|YP_001354157.1| periplasmic component of the Tol biopolymer transport system [Janthinobacterium sp. Marseille] gi|151280881|gb|ABR89291.1| periplasmic component of the Tol biopolymer transport system [Janthinobacterium sp. Marseille] Length = 423 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 114/434 (26%), Positives = 200/434 (46%), Gaps = 13/434 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K ++ F T HA ++V + + +A F +VS ++ D Sbjct: 2 IKTTFLRSFAVMALFITTLAHAQLRVEIAGVGANQIPVAIAAFGDETLAPQQVSAIIKAD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F +I + +S DW S GA +V G V+K R V +RL+D Sbjct: 62 LLRSGFFKIIDTGG----VLTENSQLNLADWKSRGADAIVVGSVLKLADGRYEVRYRLFD 117 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 Q+ S P R AH ++DD+Y+ +TG KG F +RI +V++S + Sbjct: 118 TVKGTQLSSLALASQPQFLRVSAHKVADDVYEKLTGIKGAFATRIAYVTKSP----KEFR 173 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D DG + S + I+ P +SP+ KVAY +++++ + VY+ D + R Sbjct: 174 LEIADSDGEGTQVALRSNEPII-SPSWSPDGTKVAYVSFENKKPV-VYIQDL-VSRKRTV 230 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 NF+ AP ++ +G R +++ +D +Y V+ RL+++ I+ +S D Sbjct: 231 AANFKGSNSAPSWAPDGNRLAVALSRDGLTQVYVVNADGTGLRRLSSSNGIDTEPQFSAD 290 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 I F SDR G Q+Y M +NG + +R++ + P SP G +A+ KF Sbjct: 291 GQSIFFTSDRSGGPQIYKMGANGGEARRVTFSGSYN-ISPRISPDGKYLAYISRREGKFQ 349 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + ++ QE+ L + ++P++SP+G+ L+++ + + S+D + L Sbjct: 350 LFLLDLTNGQEQRLSDTVKDESPSFSPNGKYLMYATESGRRGTLAVVSVDGQ-VKQRLTT 408 Query: 433 TPAYASDPQWVGFM 446 +P W FM Sbjct: 409 QAGDIREPTWGPFM 422 >gi|134095584|ref|YP_001100659.1| TolB periplasmic protein [Herminiimonas arsenicoxydans] gi|133739487|emb|CAL62538.1| Protein TolB precursor [Herminiimonas arsenicoxydans] Length = 423 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 117/434 (26%), Positives = 202/434 (46%), Gaps = 13/434 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K + ++ F + HA ++V + + IA F +VS ++ D Sbjct: 2 TKTSFLRSFAILALFVTSLAHAQLRVEIAGVGANQIPIAIAAFGDESIAPHQVSAIIKAD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F +I + +S DW S GA LV G V + R V++RL+D Sbjct: 62 LLRSGYFKVIDTG----TVLTENSQVNLADWKSRGADALVVGSVSRLPDGRFDVKYRLFD 117 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + Q+ + P R AH I+DDIY+ +TG +G F +RI +V+++ + Sbjct: 118 TIKQAQLSSLALANQPQFIRVSAHKIADDIYEKLTGIRGAFATRIAYVTKAG----KEFR 173 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D DG + S + I+ P +SP+ KVAY +++++ + VY+ D + R Sbjct: 174 LEIADSDGEGTQVALRSNEPII-SPAWSPDGTKVAYVSFENKKPV-VYIQDL-VSRKRTV 230 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 NF+ AP +S +G R +++ +D +Y V+ RL+N+ I+ YS D Sbjct: 231 AANFKGSNSAPSWSPDGSRLAVALSRDGLTQVYVVNADGTNPRRLSNSNGIDTEPQYSAD 290 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 I F SDR G Q+Y M SNG + +R++ + P SP G +A+ KF Sbjct: 291 GQSIYFTSDRSGGPQIYKMGSNGGEARRVTFAGSYN-ISPRISPDGKFLAYISRREGKFQ 349 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + ++ + QE+ L + ++P++SP+G+ L+++ + + S+D + L Sbjct: 350 LFILDLNNGQEQRLSDTVKDESPSFSPNGKYLMYATESGRRGTLAVVSVDGQ-VKQRLTT 408 Query: 433 TPAYASDPQWVGFM 446 +P W FM Sbjct: 409 QSGDIREPTWGPFM 422 >gi|220935397|ref|YP_002514296.1| hypothetical protein Tgr7_2229 [Thioalkalivibrio sp. HL-EbGR7] gi|254764843|sp|B8GUI9|TOLB_THISH RecName: Full=Protein tolB; Flags: Precursor gi|219996707|gb|ACL73309.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 435 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 120/420 (28%), Positives = 215/420 (51%), Gaps = 10/420 (2%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDE-LGGKVSEVVSKDLQRSDVFNLISQDSFK 88 A +++ P++I + + ++ +L RS F+ + Q Sbjct: 22 AQAALEIRITQGVEGAMPIAIVPFGWEGPGARPPEDIGAIIQANLHRSGQFSPMEQGRMP 81 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 Q+ T + FQ W G +V GR++ G DR V+F+L+D +Q+ G +S Sbjct: 82 QRPTRGQDV-NFQVWRGAGVDYVVIGRLVPAGADRFNVQFQLFDTVRGRQVTGYSIPASS 140 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R+ AH SD IYQ ITG +G FN+R+ +VS + G + +L V D DG N R + Sbjct: 141 SQLRRAAHMASDIIYQQITGVRGAFNTRVAYVSVTREGGEQRFALQVADADGHNPRTIFR 200 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 SR I P +SP+ +++AY ++++ + +Y+ D +RI +F+ + AP +S + Sbjct: 201 SRQPI-LSPVWSPDGRRLAYVSFENRNS-EIYVQDID-GAQRERIASFQGINSAPAWSPD 257 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G+R +++ +D DIY ++L + R+TN+ I+ ++PD ++F SDR G Q+ Sbjct: 258 GRRMALTLSRDGQPDIYVMNLADRSLLRVTNSRSIDTEPEWTPDGRNLLFTSDRAGNPQI 317 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y +G +R++ D + +P SP G L+A G +F I V+ + Q RLL + Sbjct: 318 YEQSLSGGQPRRLTFDGRYN-GNPTLSPDGRLVAMVNGDGGRFRIAVLDRQTRQFRLLTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFMD 447 +AP+++P+G +I++ G G +L ++ +GR ++L+ +P W F+D Sbjct: 377 GRLDEAPSFAPNGSMIIYATAGRGGQG-ELAAVSADGRVRQSLVLQEGEVREPAWSPFLD 435 >gi|226705864|sp|B4RTH4|TOLB_ALTMD RecName: Full=Protein tolB; Flags: Precursor Length = 451 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 111/455 (24%), Positives = 204/455 (44%), Gaps = 31/455 (6%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 L L + LI F ++ A +++ + P+ + K+ + G +S+VV DL Sbjct: 3 KLGLWIALITMAFSANVSASLEIVITEGVDSARPIGVVPFKWKGQGSMPGDISKVVMADL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS FN +S D Q + + + W +LG ++ G + +G DR V + L DV Sbjct: 63 MRSGKFNPVSVDKMPQFPETAEQVS-YTAWATLGVDTVLVGSIEPQGGDRFLVSYELIDV 121 Query: 134 KDRKQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 + + ++ + +R+ AH ISD +Y+ +TG +G F Sbjct: 122 LKGQVDNGQAKVLKNGSLVSSNNHVLAARQAVINGRDFRQYAHRISDIVYEKLTGVRGAF 181 Query: 174 NSRILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 ++I +V + K L + D DG N L S + L P +SP+ +K+AY +++ Sbjct: 182 LTKIAYVIVRDRDTVEKPYQLVIADYDGENETRLL-SSPEPLMSPVWSPDGEKLAYVSFE 240 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + ++++ D RI +F + +P FS +GK+ + + KD ++Y +DL + Sbjct: 241 NRRP-QIFIQDIYTSE-RTRITDFPGINSSPTFSPDGKQLAMVLSKDGNPELYVMDLATK 298 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 R+T I+ ++ PD S ++F S+R GK Q+Y + N +R++ E + Sbjct: 299 NLRRITRNRAIDTEPAWLPDGSGLIFSSERGGKPQIYSVNLNSGKVRRVTFVGEQNLGG- 357 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G + + + I DG ++L ++P+ +P+G +I+S +G Sbjct: 358 TLSPDGKQMIMVNQTNGNYHIAKQSLDGGSPQVLTRTYLDESPSVAPNGSMIIYSTLHEG 417 Query: 413 DTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + L+GR + L P W F+ Sbjct: 418 TQVLSL--VSLDGRFKARLPAANGQVKSPSWSPFL 450 >gi|302381977|ref|YP_003817800.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas subvibrioides ATCC 15264] gi|302192605|gb|ADL00177.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas subvibrioides ATCC 15264] Length = 466 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 164/457 (35%), Positives = 244/457 (53%), Gaps = 29/457 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF----------------------VKVATNSANYSPVSI 50 M+ NL L V G TS+ A ++V + P I Sbjct: 1 MRPNLLLGTVAALGILATSLQAQTSGLNGPSRQQTQAQPAQTGEPIEVEIDQGVLRPFQI 60 Query: 51 AFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQV 110 A F + G ++EV+S DL+RS F I+ SF + + P F W +GAQ Sbjct: 61 AVAPFSGQN--GASLTEVLSGDLRRSGFFEPINPGSFIETGLTLANAPNFPQWTQIGAQA 118 Query: 111 LVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 ++ G V R FRL+D + Q++ F ++P WR+IAH I+D +Y +TGE Sbjct: 119 VLYGSVTPRPDGRNDFGFRLYDPYRQCQLVSYNFTATPEQWRRIAHKIADVVYARMTGES 178 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F++RI++V+ES + L ++D+DG N +LT + I+ PRFS N ++ Y Sbjct: 179 GVFDTRIIYVAESGTELNRLSRLAIVDQDGYNPVFLTDGSE-IILTPRFSSNPNEITYMA 237 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ED R+YL + + R + +G F LAPR+S +G + S+ + D+Y ++L+ Sbjct: 238 LG-EDYSRIYLYNLQTGR-RESLGEFDGQALAPRYSPDGTKVAFSIIRGGNTDVYVMNLR 295 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + RLT+ I+ S S+SPD+S+IVF SDR G +LYVM ++GS+Q+ IS+ SY Sbjct: 296 TRQLSRLTSDPGIDTSPSFSPDASRIVFNSDRTGTPRLYVMNADGSNQRPISRGG-GSYT 354 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 P WSP+GDLIAFTK G +F IGVM DGS ER+L + P+W+P+GR L+FSR+ Sbjct: 355 APAWSPRGDLIAFTKSGGGQFGIGVMATDGSGERMLSRSYFEEGPSWAPNGRYLMFSRQT 414 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 G + L+ +DL+GR SDP W +D Sbjct: 415 RG-GNTNLWMVDLSGRVIAQSGYQGRGSDPAWSPLLD 450 >gi|145297814|ref|YP_001140655.1| translocation protein TolB [Aeromonas salmonicida subsp. salmonicida A449] gi|166988074|sp|A4SJ35|TOLB_AERS4 RecName: Full=Protein tolB; Flags: Precursor gi|142850586|gb|ABO88907.1| Periplasmic component of the Tol biopolymer transport system [Aeromonas salmonicida subsp. salmonicida A449] Length = 441 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 206/449 (45%), Gaps = 23/449 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 I ++ S A + + + P++IA K+ +L ++EVVS Sbjct: 1 MIRKVFFALVGCLLLSQSAQAALDIVITGGIDSARPIAIAPFKWEGNGQLPQDIAEVVSN 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F +++ Q ++ I F W S G + +V G + G ++ F L Sbjct: 61 DLMRSGKFKPLARGQMPQTPSSSGEI-NFAPWASQGVEAVVVGSIAAVGDGTYKINFELV 119 Query: 132 DVKDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 DV + + + A R+ AH ISD +Y+ +TGE+G F +RI + Sbjct: 120 DVLKGQLAKTQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRIAY 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS L + D DG N + L SR+ L P +SP+ K+AY +++++ + Sbjct: 180 VSIE-QGAQFPYQLRISDYDGYNEKTLLRSREP-LMSPAWSPDGSKLAYVSFENQKS-EI 236 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D ++ I +FR + AP++S +G+R I + KD DIY +D+ S R+TN Sbjct: 237 YVQDI-YNQQRSLISSFRGINGAPKWSPDGRRLAIVLSKDGQPDIYVIDVASKQLTRVTN 295 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 T I+ ++ PD ++F S+R GK Q+Y + +R++ + E++ V +P G Sbjct: 296 TRVIDTEPAWMPDGQTLIFTSERGGKPQIYSVNLATGVTRRMTWEGESNQGASV-TPDGK 354 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + ++ I + +L + + ++P+ +P+G +I++ G L Sbjct: 355 SMVMVTRVQGQYRIARQDMESGAMLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLAL- 413 Query: 420 SIDLNGRNETLINT-PAYASDPQWVGFMD 447 + +GR + ++ T P W F++ Sbjct: 414 -VSTDGRFKAVLPTSSGEIRAPAWSPFLN 441 >gi|260768866|ref|ZP_05877800.1| TolB protein precursor [Vibrio furnissii CIP 102972] gi|260616896|gb|EEX42081.1| TolB protein precursor [Vibrio furnissii CIP 102972] Length = 450 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 108/458 (23%), Positives = 200/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L +L+ +A +++ + P++I K+ +L VS V++ Sbjct: 1 MLKRLMLGCLLVVSSSVQFANAALELVITDGINSARPIAIVPFKWEGKTKLPQDVSGVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ I Q N + +F W S+G L+TG + + + ++L Sbjct: 61 SDLQRSGKFSPIPTSKMPQTPYNEADV-KFDAWTSIGVDALLTGSITQNADGNYVINYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + + K R+ AH I+D +Y+ +TGE Sbjct: 120 VDVVRGQLTQGQSRALSSDGQLVLSKDHVLFNKVATVPAKRMREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 180 RGAFLTRIAYVVVN-DKDAYPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +Y+M+ +++ ++ APRFS +GK + + K ++ +Y++DL Sbjct: 238 SFQNGQA-EIYIMNIYTGE-REKVTSYPRHNGAPRFSPDGKTLALVLSKTGSLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 S ++T+ N ++PD ++F SDR GK Q+Y + KR++ + Sbjct: 296 TSRKLTQITSGRSNNTEPFWNPDGKSLIFTSDRGGKPQIYQVNLTDGATKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFLVMVNRSNSGFNLAKQDLETGSVQILTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|152996216|ref|YP_001341051.1| translocation protein TolB [Marinomonas sp. MWYL1] gi|189035984|sp|A6VXD7|TOLB_MARMS RecName: Full=Protein tolB; Flags: Precursor gi|150837140|gb|ABR71116.1| Tol-Pal system beta propeller repeat TolB [Marinomonas sp. MWYL1] Length = 432 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 104/437 (23%), Positives = 205/437 (46%), Gaps = 11/437 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M CL ++ F +S A + + S + IA F +D L ++++V Sbjct: 1 MMFKKCLSVLFTCLIFISSARAQLVIEITSGADQLLPIAVVPFGYEGVDALPEDIAQIVE 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS +F I + + + + ++DW L + +V G + K ++ R+ F L Sbjct: 61 ADLARSGLFQPIPRSNMLSMPSKEADV-FYRDWRLLKSDYVVIGAIKKLPNNQYRIGFEL 119 Query: 131 WDVKDRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +V +K + S ++R AH ISD +Y+ +TG +G F++RIL+V+ Sbjct: 120 LNVLSQKPVQKHSSIDVSARNFRDAAHYISDKVYELLTGTRGAFSTRILYVTAEGDKKAP 179 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG + + S++ I P +S + +K+AY + + +++ + + Sbjct: 180 LFKLQVADADGHRPQVVVESKEPI-LSPSWSMDGRKIAYVMFRNRRP-NIFIQELATGK- 236 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I FR + AP +S +GK+ + + KD +IY++D+ + ER+TN I+ S+ Sbjct: 237 RQQIAQFRGLNGAPAWSPDGKKLALVLSKDNNPEIYTLDIATQKLERMTNHYAIDTEPSW 296 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD IVF SDR G Q+Y + N +R++ + + + +P G + + + Sbjct: 297 EPDGKGIVFTSDRGGNPQIYRLDVNSKRVERVTFEGDLNTRA-RMTPDGRYLVTVQKNDG 355 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 + I + + ++L E ++P+ +P+G ++++ G L + ++G + Sbjct: 356 NYHIALQDMKTGRVQILTETYLDESPSIAPNGSMVMYATTYQGKGI--LAVVSVDGLVKY 413 Query: 429 TLINTPAYASDPQWVGF 445 L + +P W + Sbjct: 414 RLPSADGDVREPSWSPY 430 >gi|148555048|ref|YP_001262630.1| translocation protein TolB [Sphingomonas wittichii RW1] gi|166229992|sp|A5V876|TOLB_SPHWW RecName: Full=Protein tolB; Flags: Precursor gi|148500238|gb|ABQ68492.1| Tol-Pal system beta propeller repeat, TolB [Sphingomonas wittichii RW1] Length = 439 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 155/420 (36%), Positives = 225/420 (53%), Gaps = 15/420 (3%) Query: 37 KVATNSANYSPVSIAFT----------KFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 +V P+ IA LG +V++VV+ DL+ S +F+ + + + Sbjct: 24 EVDITGGIAQPMPIAIPGMPTPAVANTPAGDTAALGQRVADVVTNDLKNSGLFSPLPKSA 83 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 + + P + W GAQ L+ G V G L V L+DV R ++ + F Sbjct: 84 LQTVTHPQVTAPDYMFWTQSGAQALIQGFVQANGDGSLTVGCYLYDVLARTELTRQGFVV 143 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 PA WR+ AH +D +Y +TGE F+SR+++VSE+ L +MD+DGAN R+L Sbjct: 144 QPAQWRRAAHKCADLVYTRLTGEGPYFDSRVVYVSETGPKTNRIKRLAIMDQDGANHRFL 203 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T + I+ PRF+PNQQ + Y +Y + RVY+ D + + + +M APRFS Sbjct: 204 TNGQ-TIVLTPRFAPNQQTITYMSYTNNRA-RVYVYDIGSGSQ-RLVVDQPNMTFAPRFS 260 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+ + S+ DIY V +RLT + I+ ASYSPD S+IVFESDR G + Sbjct: 261 PDGRTIVFSMAVGGNTDIYRVSAGGGTPQRLTTSPGIDTGASYSPDGSKIVFESDRSGTQ 320 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 QLYVM ++GS+Q RIS Y WSP+GDLIAFTK G F +G+M DGS E++L Sbjct: 321 QLYVMNADGSNQNRISF-GSGRYGSAAWSPRGDLIAFTKI-GGGFNVGIMNIDGSGEKIL 378 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + P+WSP+GR ++F R G + L+S+DL G NE + TP SDP W + Sbjct: 379 TNGWQDEGPSWSPNGRVIMFFRTAQGSGKADLWSVDLTGVNERPVPTPLDGSDPAWGPLL 438 >gi|294678712|ref|YP_003579327.1| TolB protein [Rhodobacter capsulatus SB 1003] gi|294477532|gb|ADE86920.1| TolB protein [Rhodobacter capsulatus SB 1003] Length = 437 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 156/436 (35%), Positives = 246/436 (56%), Gaps = 8/436 (1%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKD 72 I +++ + +++ + P+ A FV L +++ V++ D Sbjct: 5 ILAATAALMLTTGMAAAQQGPLRIELDEGVIEPLPYALPTFVDEGAGSLASQITRVIADD 64 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + +F I + + Q+ + D+ + DW ++ AQ L+ G V G ++ V+FRL D Sbjct: 65 LSGTGLFREIPEAAHIQRFGSFDTPVSYADWQAINAQALINGSVGMSG-GKVVVKFRLHD 123 Query: 133 VKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 V Q+ G++ +SP SWR++AH ++D IY ITGE G F+SR+++VSE+ + Sbjct: 124 VYGNTQLGDGQQLAASPQSWRRLAHKVADVIYARITGESGYFDSRVVYVSETGPKDQRQK 183 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +MD DG N+ YLT S I+ PRFSP ++ Y T++ R+ +M Sbjct: 184 RLAIMDYDGENVNYLTDS-STIVLAPRFSPQGDRILYTTFETG-FPRIKMMSVGNAAGKL 241 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +M +PRFS +G + S++++ D+Y + + + ERLTN+ I + SYSP Sbjct: 242 LPEVPGTMTFSPRFSPDGGSIVYSLEQNGNTDLYRMSVSGGSVERLTNSPAIETAPSYSP 301 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D SQIVFESDR G +Q+YVM ++G + RIS + + Y PVWSP+GDLIAFTK SG +F Sbjct: 302 DGSQIVFESDRSGTQQIYVMSASGGEPVRIS-NGDGRYGTPVWSPRGDLIAFTKQSGGRF 360 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETL 430 IGVM+ DGS+ER L + PTW+P+GR L+F+R+ G G+K++++D+ GRN Sbjct: 361 FIGVMRTDGSEERDLTASYLDEGPTWAPNGRVLMFTRESPGAAGGAKMFTVDITGRNLKA 420 Query: 431 INTPAYASDPQWVGFM 446 + ASDP W + Sbjct: 421 VAGVGGASDPTWGPLL 436 >gi|226330928|ref|ZP_03806446.1| hypothetical protein PROPEN_04851 [Proteus penneri ATCC 35198] gi|225201723|gb|EEG84077.1| hypothetical protein PROPEN_04851 [Proteus penneri ATCC 35198] Length = 432 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 111/446 (24%), Positives = 202/446 (45%), Gaps = 19/446 (4%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGG 63 + + LN+ L +L V T +A V++ P+ + K+ ++ Sbjct: 1 MMKQALNVIFGLLILCV------TTLANAEVRIEITQGVNTARPIGVVPFKWEGTGQMPE 54 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++ V++ DL+ S FN I Q+ + + W +LG +V GRV + Sbjct: 55 DIAGVIAADLRNSGKFNPIDVSRIPQQPVTASEV-QPALWTALGIDSVVVGRVQPSADGQ 113 Query: 124 LRVEFRLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L DV ++ + F P+ W R AHT SD++++ +TG +G F +RI +V Sbjct: 114 YLVSYQLVDVAGSPGAVLSQSEFKVPSKWLRYSAHTASDEVFEKLTGIRGAFRTRIAYVV 173 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + G L V D DG N + S Q L P +SP+ K+AY T++ + Sbjct: 174 VTN-GGAYPYELRVSDYDGFNQDRVYRS-SQPLMSPAWSPDGAKLAYVTFESGQ--SALV 229 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T ++I +F AP FS +G + ++ K ++++Y +DL S ++TN Sbjct: 230 VQTLATGEIRQIASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMDLASGNMTQVTNGR 289 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++ PD +V+ SD+ G+ Q+Y + NG +RI+ + + + +P SP G + Sbjct: 290 SNNTEPNWMPDGQTLVYTSDQGGRPQIYKVNINGGTPERITWEGKQNQ-NPAVSPDGSFL 348 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + I + + + L + + P+ +P+G +I+S + T +L + Sbjct: 349 VMVSSESGRQHIAKQDLETNSVQYLTDTFLDETPSIAPNGTMVIYSSTQGLGTILQL--V 406 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W FM Sbjct: 407 STDGRFKARLPATDGQVKSPAWSPFM 432 >gi|83859800|ref|ZP_00953320.1| translocation protein TolB precursor [Oceanicaulis alexandrii HTCC2633] gi|83852159|gb|EAP90013.1| translocation protein TolB precursor [Oceanicaulis alexandrii HTCC2633] Length = 448 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 162/448 (36%), Positives = 241/448 (53%), Gaps = 16/448 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEV 68 ++ +L LI + V P IA F+ D E+G +S V Sbjct: 4 LRYLFAPILALIVMAGSAFAQTPLVVDVTEGTLDPTPIAIPDFLGADNREAEIGADISRV 63 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S +LQ S +F + D+F + IT+ + PRF DW + A L+ G V + DR+ V F Sbjct: 64 ISNNLQTSGLFAPVDPDAFIEDITDINLRPRFGDWRVINASALLVGEVTIDENDRMLVAF 123 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE-SVVSG 187 RLWD +Q+ G +F +SP +WR+IAH +SD +Y+ +TGE G F++RI++VSE +G Sbjct: 124 RLWDANTEQQLQGLQFVTSPDNWRRIAHKVSDAVYERLTGESGYFDTRIVYVSEGDGPNG 183 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L VMD+DGAN +LT R + P +SP+ Q++ Y ++ D YL D Sbjct: 184 EPIRRLAVMDQDGANPSFLTD-RSYMALLPNYSPSAQQITYVSFRDGRATS-YLYDLETG 241 Query: 248 RAPKRIGNFR-----SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 R + L+ RF NG+ ++S ++ D++ DL+S +LT Sbjct: 242 RQEALFDSGPSLASEGQSLSARFHPNGRELVVSAERHSGHDLFKFDLRSRTLRQLTTHPA 301 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++ SY+PD Q+VF S R G+ QLYVM ++G+D +RI+ E Y PVWSP+GDLIA Sbjct: 302 DDVEPSYAPDGEQVVFSSSRGGQSQLYVMNADGTDPQRITF-GEGRYTTPVWSPRGDLIA 360 Query: 363 FTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGDTGSKLY 419 FTK +F +GV+ DG +ER+L E + P WSP+GR L+F+R + T ++ Sbjct: 361 FTKQRSGQFMLGVVAADGSGEERILYEGYFVDTPAWSPNGRVLLFTRGDRTREGTTYSIW 420 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 SIDL G N + T ASDP W +D Sbjct: 421 SIDLAGFNLRRLPTQGEASDPAWSPLID 448 >gi|269139918|ref|YP_003296619.1| translocation protein [Edwardsiella tarda EIB202] gi|267985579|gb|ACY85408.1| translocation protein [Edwardsiella tarda EIB202] gi|304559753|gb|ADM42417.1| tolB protein precursor [Edwardsiella tarda FL6-60] Length = 430 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 100/432 (23%), Positives = 198/432 (45%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L+V + + + +HA V++ + P+ + K++ + +++ DL+ S Sbjct: 7 LMVGLLVLWASVLHAEVRIVITQGVDSARPIGVVPFKWMGPGAAPENIGGIIAADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ + + W +LG +V G+V V ++L D Sbjct: 67 KFNPIDASRMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTSGNP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ + R AHT SD++++ +TG KG F +RI +V ++ G L V Sbjct: 126 GSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N +++ + L P +SP+ K+AY T++ ++ T + A +++ + Sbjct: 185 ADYDGYN-QFVVHRSAEPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLSNGAIRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F +P FS +G + ++ K ++++Y +DL S A ++T+ N ++ PDS Sbjct: 242 FPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPTWFPDSQN 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F SD+ G+ Q+Y M NG +R++ + + V SP G + + I Sbjct: 302 LAFTSDQAGRPQIYKMNINGGAAQRLTWEGSQNQDAEV-SPDGKFLVMVSSNAGAQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + + ++L + + P+ +P+G +I+S + GS L + ++GR + L T Sbjct: 361 LDLGTNATQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGSVLQLVSIDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|262276103|ref|ZP_06053912.1| TolB protein precursor [Grimontia hollisae CIP 101886] gi|262219911|gb|EEY71227.1| TolB protein precursor [Grimontia hollisae CIP 101886] Length = 450 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 198/457 (43%), Gaps = 32/457 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M +L V + A +K+ + P++I K+ +L VS VV+ Sbjct: 1 MLKHLLFGAVAMMLAVIQPAQAELKLVITEGINSARPIAIVPFKWEGEGKLPTDVSAVVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ I D Q N D+ F DW ++G LVTG V + ++E++L Sbjct: 61 SDLQRSGKFSPIPTDKMPQTPYN-DTEVDFNDWTAIGVDALVTGTVKPAAGGKYQIEYQL 119 Query: 131 WDVKDRKQIIGK---------------------KFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + G+ + + RK+AH I+D IY+ +TGE Sbjct: 120 IDIVRGQLTGGQSKGLSASGELVITKDHLLIHSRHTVGQEALRKLAHLIADRIYEKLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 KG F +RI +V S L + D DG N + S Q L P +SP+ +++AY Sbjct: 180 KGAFLTRIAYVVIDEKSDH-PYQLRISDYDGYNEHRVL-SSTQPLMSPSWSPDGKQLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++++ +++L + + I +F +PRFS +G + + + K ++ IY +DL Sbjct: 238 SFENGQA-QIFLTNIYTGE-RQMISSFPRHNGSPRFSPDGSKLAMVLSKTGSLQIYVMDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + E++T N ++PD ++F SDR GK Q+Y + + RI+ + Sbjct: 296 NTRQLEQITKGRANNTEPFWAPDGQSLIFTSDRGGKPQIYRVNLSDGSTNRITWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S + I +L + ++P+ +P+G +I+S Sbjct: 356 GGQ-LTPDGRYLVMVHRSDSGYNIAKQDLQTGAVEILTKTMLDESPSLAPNGSMVIYSSV 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGF 445 + L + ++GR + L T P W F Sbjct: 415 YG--RSNVLSMVSIDGRFKARLPATNGRVRAPAWSPF 449 >gi|297539676|ref|YP_003675445.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylotenera sp. 301] gi|297259023|gb|ADI30868.1| Tol-Pal system beta propeller repeat protein TolB [Methylotenera sp. 301] Length = 439 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 217/442 (49%), Gaps = 15/442 (3%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKV 65 F+ + + +NL + F P+ +A +++ + V IA F + Sbjct: 11 FLRLQFSTILNLAIF--SASLFIPSLANAALEIEISGGGAQQVPIAIVPFEQSGNSADNI 68 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S +++ DL+RS +F ++ K T+ I ++ +W +L AQ + G V +RL+ Sbjct: 69 SSIIAADLKRSGLFRVLETGGVVNKPTDITQI-KYSEWANLQAQAMAVGVVETLPNNRLK 127 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V F+L DV + Q+ G ++ +P R AH I+D IYQ +TGE G F SRI +++ Sbjct: 128 VTFQLADVLKQSQLTGMQYTIAPNQLRTTAHKIADVIYQKLTGESGIFASRIAYIT---- 183 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + L V D DGAN + S++ I+ P +SP K+AY +++ + + +Y+ Sbjct: 184 KANDRYMLKVADADGANPLTMVSSKEPII-SPAWSPEGNKIAYVSFEKKKPI-IYVQTL- 240 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + F+ AP +S +G + I + +Y+++ + R+T I+ Sbjct: 241 -SGQRTVLAGFKGNNSAPAWSPDGSKLAIVLTYGANSQVYTINADGSGLSRITKGNAIDT 299 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++S D+ I F SDR GK Q+Y + +NG D +R++ + + P +SP G +A + Sbjct: 300 EPTWSSDAKWIYFTSDRGGKPQIYKVSANGGDPQRVTFEGAYNV-SPRFSPDGKSLAMIR 358 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G KF + + Q +LL E S ++P+++P+GR ++++ + G L ++ +G Sbjct: 359 NDGGKFRVALQDLTTGQVQLLSEGSQDESPSFAPNGRVILYATRSSGHGA--LAAVSADG 416 Query: 426 RNETLIN-TPAYASDPQWVGFM 446 R + +N + +P W + Sbjct: 417 RVKQRLNESGGDIREPAWGPLI 438 >gi|330828307|ref|YP_004391259.1| protein tolB [Aeromonas veronii B565] gi|328803443|gb|AEB48642.1| Protein tolB [Aeromonas veronii B565] Length = 441 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 206/449 (45%), Gaps = 23/449 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 I ++ S A + + + P+++A K+ +L ++EVVS Sbjct: 1 MIRKVFFALVGCLLLGQSAQAALDIVITGGIDSARPIAVAPFKWEGNGQLPQDIAEVVSN 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F +++ Q ++ I F W S G + +V G + G +V F L Sbjct: 61 DLMRSGKFKPLARGQMPQTPSSSSEI-NFAPWASQGVEAVVVGSISAVGDGTYKVNFELV 119 Query: 132 DVKDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 DV + + + A R+ AH ISD +Y+ +TGE+G F +R+ + Sbjct: 120 DVLKGQLAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAY 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS + L + D DG N + L SR+ L P +SP+ K+AY +++++ + Sbjct: 180 VSVQQGT-QFPYQLRISDYDGYNEKTLLRSREP-LMSPAWSPDGSKLAYVSFENQKS-EI 236 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D + I +FR + AP +S +G+R I + KD + ++Y VD+ S R+T Sbjct: 237 YVQDIYT-QQRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTT 295 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + I+ S+ PD ++F S+R GK Q+Y + +R++ + E++ +P G Sbjct: 296 SRVIDTEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGA-SITPDGK 354 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 ++ ++ I + + +L + + ++P+ +P+G +I++ G L Sbjct: 355 IMVMVTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLAL- 413 Query: 420 SIDLNGRNETLINT-PAYASDPQWVGFMD 447 + +GR + ++ T P W F++ Sbjct: 414 -VSTDGRFKAVLPTSSGEIRAPAWSPFLN 441 >gi|15641838|ref|NP_231470.1| translocation protein TolB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727646|ref|ZP_01680749.1| tolB protein [Vibrio cholerae V52] gi|147674437|ref|YP_001217372.1| translocation protein TolB [Vibrio cholerae O395] gi|153214273|ref|ZP_01949290.1| tolB protein [Vibrio cholerae 1587] gi|153800415|ref|ZP_01955001.1| tolB protein [Vibrio cholerae MZO-3] gi|153828587|ref|ZP_01981254.1| tolB protein [Vibrio cholerae 623-39] gi|227081965|ref|YP_002810516.1| tolB protein [Vibrio cholerae M66-2] gi|229508067|ref|ZP_04397572.1| TolB protein precursor [Vibrio cholerae BX 330286] gi|229511694|ref|ZP_04401173.1| TolB protein precursor [Vibrio cholerae B33] gi|229515216|ref|ZP_04404676.1| TolB protein precursor [Vibrio cholerae TMA 21] gi|229518833|ref|ZP_04408276.1| TolB protein precursor [Vibrio cholerae RC9] gi|229523854|ref|ZP_04413259.1| TolB protein precursor [Vibrio cholerae bv. albensis VL426] gi|229529141|ref|ZP_04418531.1| TolB protein precursor [Vibrio cholerae 12129(1)] gi|229607628|ref|YP_002878276.1| translocation protein TolB [Vibrio cholerae MJ-1236] gi|254848922|ref|ZP_05238272.1| tolB protein [Vibrio cholerae MO10] gi|255745402|ref|ZP_05419351.1| TolB protein precursor [Vibrio cholera CIRS 101] gi|297579355|ref|ZP_06941283.1| tolB protein [Vibrio cholerae RC385] gi|298498125|ref|ZP_07007932.1| tol-Pal system beta propeller repeat protein TolB [Vibrio cholerae MAK 757] gi|32699719|sp|Q9KR11|TOLB_VIBCH RecName: Full=Protein tolB; Flags: Precursor gi|172047657|sp|A5F753|TOLB_VIBC3 RecName: Full=Protein tolB; Flags: Precursor gi|254764844|sp|C3LND9|TOLB_VIBCM RecName: Full=Protein tolB; Flags: Precursor gi|10441440|gb|AAG17042.1|AF187269_4 TolB [Vibrio cholerae O395] gi|9656363|gb|AAF94984.1| tolB protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630033|gb|EAX62440.1| tolB protein [Vibrio cholerae V52] gi|124115421|gb|EAY34241.1| tolB protein [Vibrio cholerae 1587] gi|124124041|gb|EAY42784.1| tolB protein [Vibrio cholerae MZO-3] gi|146316320|gb|ABQ20859.1| tolB protein [Vibrio cholerae O395] gi|148875982|gb|EDL74117.1| tolB protein [Vibrio cholerae 623-39] gi|227009853|gb|ACP06065.1| tolB protein [Vibrio cholerae M66-2] gi|227013735|gb|ACP09945.1| tolB protein [Vibrio cholerae O395] gi|229332915|gb|EEN98401.1| TolB protein precursor [Vibrio cholerae 12129(1)] gi|229337435|gb|EEO02452.1| TolB protein precursor [Vibrio cholerae bv. albensis VL426] gi|229343522|gb|EEO08497.1| TolB protein precursor [Vibrio cholerae RC9] gi|229347921|gb|EEO12880.1| TolB protein precursor [Vibrio cholerae TMA 21] gi|229351659|gb|EEO16600.1| TolB protein precursor [Vibrio cholerae B33] gi|229355572|gb|EEO20493.1| TolB protein precursor [Vibrio cholerae BX 330286] gi|229370283|gb|ACQ60706.1| TolB protein precursor [Vibrio cholerae MJ-1236] gi|254844627|gb|EET23041.1| tolB protein [Vibrio cholerae MO10] gi|255737232|gb|EET92628.1| TolB protein precursor [Vibrio cholera CIRS 101] gi|297536949|gb|EFH75782.1| tolB protein [Vibrio cholerae RC385] gi|297542458|gb|EFH78508.1| tol-Pal system beta propeller repeat protein TolB [Vibrio cholerae MAK 757] gi|327484391|gb|AEA78798.1| tolB protein precursor [Vibrio cholerae LMA3894-4] Length = 450 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 108/458 (23%), Positives = 205/458 (44%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L +L+LIG F +A +++ + P++I K+ +L VS V++ Sbjct: 1 MFKRLVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + + F W S+G L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + K + R+ AH I+D +Y+ +TGE Sbjct: 120 VDIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ Q L P +SP+ Q +AY Sbjct: 180 RGAFLTRIAYVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL Sbjct: 238 SFQNGQA-EIYMMNIYSGK-REKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + +T+ N + PD ++F SDR GK Q+Y + +G + KR++ + Sbjct: 296 ATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|84516652|ref|ZP_01004011.1| translocation protein TolB precursor [Loktanella vestfoldensis SKA53] gi|84509688|gb|EAQ06146.1| translocation protein TolB precursor [Loktanella vestfoldensis SKA53] Length = 438 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 165/439 (37%), Positives = 248/439 (56%), Gaps = 10/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEV 68 MK L LL+ L+ + +++ P++ A F + +L +++ + Sbjct: 2 MKRILTLLIALMFAGPAFAQGGPLRLTITDGVIEPITFAVPSFEAETPQAGQLASELTRL 61 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+++L + +F + +F ++ + F DW ++ AQ LV G V G D++ V+F Sbjct: 62 VAQNLSGTGLFREVPASAFISQVGSFAQPVAFADWRAVNAQALVIGAVSMTG-DQVNVKF 120 Query: 129 RLWDVKDRKQIIG-KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RL+DV +++ G +F + A WR++ H +SD +Y ITGE G F+SR++FV+ES Sbjct: 121 RLFDVFSGQELGGGLQFAGTTAGWRRMGHKVSDAVYSRITGEGGYFDSRVVFVAESGPKD 180 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L VMD DGAN+++LT S I+ PRFSP +V Y +++ R+ L+D Sbjct: 181 NRLKRLAVMDYDGANVQFLTDSSS-IVLAPRFSPRGDQVLYTSFESG-FPRINLLDVADV 238 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + M +PRFS +G++ + S+ DIY DL + RLT T I+ + Sbjct: 239 ARRQIATAPGEMSFSPRFSRDGRQVIYSLSNGATTDIYRTDLDTGQHVRLTATPSIDTAP 298 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S SPD SQIVFESDR G +QLY+M S G D +RIS E Y PVWSP+GDL+AFTK + Sbjct: 299 SLSPDGSQIVFESDRSGSQQLYIMSSTGGDARRISF-GEGRYSTPVWSPRGDLVAFTKQN 357 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGR 426 +F IGVM+ DGS+ERLL +APTWSP+GR ++F+R+ G D S LYS+D++GR Sbjct: 358 AGRFHIGVMRTDGSEERLLTSSFLDEAPTWSPNGRVIMFTRETQGADGASALYSVDISGR 417 Query: 427 NETLINTPAYASDPQWVGF 445 N + + ASD W Sbjct: 418 NLRAVPIQSAASDASWGPL 436 >gi|149192087|ref|ZP_01870311.1| translocation protein TolB precursor [Vibrio shilonii AK1] gi|148834073|gb|EDL51086.1| translocation protein TolB precursor [Vibrio shilonii AK1] Length = 442 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 204/450 (45%), Gaps = 32/450 (7%) Query: 21 LVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 + L+ F + +A +++ + P++I K+ +L VS V++ DLQRS Sbjct: 1 MALVLSFAAQTANAALELVITDGIDSARPIAIVPFKWEGEGKLPHDVSAVIASDLQRSGK 60 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F+ ++ Q + I F+ W S+G L+TG ++K + V ++L DV + Sbjct: 61 FSPVATSKMPQTPYDASDI-NFEAWTSIGVDSLLTGTIVKNAEGNYEVSYQLVDVVRGQL 119 Query: 139 ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 + KK R+ AH ISD +Y+ +TGE+G F +RI Sbjct: 120 TGGKSKALSDDGQLVLSNDHVLFKKKATVPGNRLREYAHRISDLVYEELTGERGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + + D DG N + + S+ Q L P +SP+ +K+AY ++ + Sbjct: 180 AYVVVN-DKDQYPYQMRIADYDGYNEKLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++M+ + ++I +F APRFS +GK +++ K + +Y+++L++ ++ Sbjct: 237 EIFIMNIYTGK-REKITSFPRHNGAPRFSPDGKTLALTLSKTGQLHVYTLNLETRKLRQI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ N + PD ++F SDR G Q+Y + + KRI+ + +P Sbjct: 296 TSGRSNNTEPFWKPDGKSLIFTSDRGGNPQIYEVNLSDGKTKRITWQGRQNLGGQ-ITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + S F + + ++L + ++P+ +P+G +I+S + + Sbjct: 355 GRYLVMVNRSNSGFNLAKQDLETGSVQILTKTLLDESPSIAPNGGMVIYSSIYN--KTNV 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + ++GR + L T P W F+ Sbjct: 413 LSMVSIDGRFKARLPATNGRVRAPAWSPFL 442 >gi|262404182|ref|ZP_06080737.1| TolB protein precursor [Vibrio sp. RC586] gi|262349214|gb|EEY98352.1| TolB protein precursor [Vibrio sp. RC586] Length = 450 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 108/458 (23%), Positives = 204/458 (44%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L +L+LIG F +A +++ + P++I K+ +L VS V++ Sbjct: 1 MFKRLIFVLMLIGTGFTNVANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + I F W SLG L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQI-DFGKWTSLGVDSLLTGTITQNAEGSYVISYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + K + R+ AH I+D +Y+ +TGE Sbjct: 120 VDIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRLREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +R+ +V + L + D DG N R + S+ Q L P +SP+ Q +AY Sbjct: 180 RGAFLTRVAYVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL Sbjct: 238 SFQNGQA-EIYMMNIYSGQ-REKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + +T+ N + PD ++F SDR GK Q+Y + + KR++ + Sbjct: 296 ATRRLKEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLTSGETKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKFLVMVNRSDSGFNLAKQDLETGALQILTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|332188231|ref|ZP_08389959.1| tol-Pal system beta propeller repeat protein TolB [Sphingomonas sp. S17] gi|332011730|gb|EGI53807.1| tol-Pal system beta propeller repeat protein TolB [Sphingomonas sp. S17] Length = 472 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 162/431 (37%), Positives = 229/431 (53%), Gaps = 16/431 (3%) Query: 26 GFFPTSIHAFVKVATNSANYSPVSIAFTKF----------VSIDELGGKVSEVVSKDLQR 75 P + + V +P+ IA + D +G ++S++++ DL+ Sbjct: 45 AVAPANGQEGLVVDVEGGISAPMPIAIPAMPTNAVVQTAAGTTDVVGQQLSQIIANDLRN 104 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F I + + P F WN GAQ LV G V G L V L+DV Sbjct: 105 SGLFTPIPPAQLRTVSFPEVTAPAFDYWNGTGAQALVQGYVRANGDGTLTVGCYLYDVLA 164 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ + F PA WR+ AH +D IY +TGE F+SRI++VSE+ L + Sbjct: 165 KSELARQGFVVQPAEWRRAAHKCADSIYTKLTGEGPYFDSRIVYVSETGPKARRIKRLAI 224 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN R+LT + I+ PRF+PNQQ + Y +Y D+ +Y+ D R + N Sbjct: 225 MDQDGANHRFLTNGQS-IVLTPRFAPNQQSIVYMSYVDKRPA-IYVYDIGSGRQRLVVQN 282 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + APRFS +G+ L S+ + DIY V Q +RLTN+ I+ SYSPD S+ Sbjct: 283 AAT-TFAPRFSPDGRWILFSMAQGGNTDIYRVSAQGGTPQRLTNSPGIDTGGSYSPDGSK 341 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 IVFESDR G +Q+YVM ++GS+Q+RIS Y PVWSP+GDLIAFTK G F IG+ Sbjct: 342 IVFESDRSGGQQIYVMNADGSNQQRISFGG-GRYATPVWSPRGDLIAFTKL-GGAFRIGI 399 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTP 434 M G E+LL + P+WSP+GR + F R G +G + ++ +DL G NE I TP Sbjct: 400 MNPSGGAEKLLTNSWQDEGPSWSPNGRVITFQRTTQGSSGKADVWMVDLTGVNERRIPTP 459 Query: 435 AYASDPQWVGF 445 SDP W Sbjct: 460 LDGSDPAWGPL 470 >gi|92113976|ref|YP_573904.1| translocation protein TolB [Chromohalobacter salexigens DSM 3043] gi|119371041|sp|Q1QWF3|TOLB_CHRSD RecName: Full=Protein tolB; Flags: Precursor gi|91797066|gb|ABE59205.1| TolB-like protein [Chromohalobacter salexigens DSM 3043] Length = 428 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 215/441 (48%), Gaps = 14/441 (3%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 + LN+ LL++ G HA + + + + IA + D+L VS Sbjct: 1 MKRLNLWAASLLLMLCAGM-----AHAELTIEITKGSDQAIPIAIVPMANGDDLPENVSR 55 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +VS DL+RS F + ++S + ++ + + +QDW L + LV G++ +G R++ Sbjct: 56 IVSNDLERSGRFEPLPRESLISRPSSSEEVH-YQDWQQLDSDYLVVGKIDNQG-GEYRIQ 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 + L +V + +++G+ SS R AH ISD I++ ITG +G F++ I +V+ S V Sbjct: 114 YELLNVNGQNRMLGEVVTSSRDQLRDSAHYISDQIFEEITGIRGAFSTSIAYVTASGVGD 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 I +L V D DG N + + S D+ + P +SP+ K+AY +++ +Y+ + Sbjct: 174 DIDYALSVADADGHNSQQIL-SSDEPILSPAWSPDGGKLAYVSFETGRP-GIYVQNLATG 231 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + R+ +F + AP +S +G++ +S+ KD +IY +D+ S RLT + I+ Sbjct: 232 QRV-RLTSFEGINGAPAWSPDGRKLAMSLSKDGQPEIYVMDIASRDLRRLTQSDAIDTEP 290 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++P+ ++F SDR G Q+Y +R++ + +SP GD I Sbjct: 291 EWAPNGRSLIFTSDRSGNPQIYRYDLGSGRAERLTFTGSYNSRG-RFSPDGDAIFMVTRD 349 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + + D + +L + ++P+ +P+G +IF+ ++ T L ++ +G Sbjct: 350 DSGYHVARQDLDTDRMTILTDSDWDESPSVAPNGTMVIFATQEG--TRGVLGAVSADGSA 407 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + +P +P W F+D Sbjct: 408 SFRLPSPQGDVREPAWSPFLD 428 >gi|238765245|ref|ZP_04626174.1| hypothetical protein ykris0001_32600 [Yersinia kristensenii ATCC 33638] gi|238696517|gb|EEP89305.1| hypothetical protein ykris0001_32600 [Yersinia kristensenii ATCC 33638] Length = 430 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 102/434 (23%), Positives = 197/434 (45%), Gaps = 13/434 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 C + + + + +HA V++ + P+ + K++ ++ +V DL+ Sbjct: 5 CRVALGFLVLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRN 64 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV-- 133 S FN I Q+ + + W +LG +V G+V V ++L D Sbjct: 65 SGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSFVVSYQLVDTSG 123 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + ++ + R AHT SD++++ +TG KG F +RI +V ++ G + L Sbjct: 124 AAGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHEL 182 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DG N +++ + L P +SP+ K+AY T++ ++ T + A +++ Sbjct: 183 RVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESGK--SALVIQTLANGAIRQV 239 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ PDS Sbjct: 240 ASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDS 299 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + + SD+ G+ Q+Y + NG +RI+ + + V SP G +A +G I Sbjct: 300 QNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-SPDGKFLALVSSNGGAQHI 358 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLIN 432 M ++L + + P+ +P+G +I+S + G+ L + +GR + L Sbjct: 359 AKMDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGAVLQLVSTDGRFKARLPA 416 Query: 433 TPAYASDPQWVGFM 446 T P W ++ Sbjct: 417 TDGQVKFPAWSPYL 430 >gi|28871117|ref|NP_793736.1| tolB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|32699697|sp|Q87Y40|TOLB_PSESM RecName: Full=Protein tolB; Flags: Precursor gi|28854367|gb|AAO57431.1| tolB protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 433 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 213/441 (48%), Gaps = 15/441 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E++S Sbjct: 1 MINLFRGLLVVLCFASAMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|157825542|ref|YP_001493262.1| translocation protein TolB [Rickettsia akari str. Hartford] gi|166229986|sp|A8GMX9|TOLB_RICAH RecName: Full=Protein tolB; Flags: Precursor gi|157799500|gb|ABV74754.1| translocation protein TolB precursor [Rickettsia akari str. Hartford] Length = 444 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 167/451 (37%), Positives = 251/451 (55%), Gaps = 23/451 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEV 68 M+ + +L+L+ F +A + +P IA KF LG V +V Sbjct: 1 MRNIIYFILLLLFSF---KGYALETINIEHGQAAPTPIAVNKFNIDSSADYVLGNDVVKV 57 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL+ S VF IS SF ++ T + P F W + A +LV G + K +L++ F Sbjct: 58 ISNDLKLSGVFCPISSASFIEERTGIEYKPLFAAWRQINASLLVNGEIKKLESGKLKISF 117 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 LWD KQ+ G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES Sbjct: 118 ILWDTLLEKQLAGEILEVPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESTSLPK 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 IK + +MD DGAN +YLT R ++ PRF+ + K+ Y +Y + VY D + + Sbjct: 178 IK-RIALMDYDGANNKYLTNGRS-LVLTPRFARSADKIFYVSYATKRRALVYEKDLKTGK 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +G+F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S S Sbjct: 236 ES-VVGDFSGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKRLHKLTDGFGINTSPS 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 YSPD +IV+ SDR G QLY+M S+GSD +RIS SY P WSP+GD IAFTK Sbjct: 295 YSPDGKKIVYNSDRNGVPQLYIMNSDGSDVQRISFGG-GSYTAPSWSPRGDYIAFTKIIR 353 Query: 367 --SGEKFAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGS 416 G+ F IG+MK D ++ER++ +++P WSP+GR ++F+ + Sbjct: 354 GAEGKTFNIGIMKAYPQDDENRERIITSGYLVESPCWSPNGRVIMFAKGWPSGAKAPGKN 413 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 K+++IDL G NE I TP ASDP+W G ++ Sbjct: 414 KIFAIDLTGHNEREIITPEDASDPEWSGVLN 444 >gi|89900876|ref|YP_523347.1| translocation protein TolB [Rhodoferax ferrireducens T118] gi|119371056|sp|Q21WN7|TOLB_RHOFD RecName: Full=Protein tolB; Flags: Precursor gi|89345613|gb|ABD69816.1| TolB-like [Rhodoferax ferrireducens T118] Length = 425 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 114/439 (25%), Positives = 201/439 (45%), Gaps = 18/439 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 + + +I LCLL+ + + A +V + + + IA + F D + K++ Sbjct: 1 MQMMKKRILLCLLVGMTCL----PVLAQFRVEVSGVGLTQLPIAVSAFRGQDSVPQKIAA 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL+RS F + + + P W GA LVTG V + R V Sbjct: 57 IVQADLERSGQFRGVDT---VGAALDEGTRPDVALWRQKGADSLVTGSVSRLADGRYDVR 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRLWDV + + G+ + + A R AH I+D IY+ +TG+KG F++RI +V+ Sbjct: 114 FRLWDVVRGQDLGGQSYAVTQADLRLSAHRIADFIYEKLTGDKGAFSTRITYVT----KA 169 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L V D DG N + S + I+ P +SPN ++AY +++ + VY D Sbjct: 170 AQRYQLWVADADGENAQSALASPEPII-SPAWSPNGSQIAYVSFESRKPV-VYTHDVATG 227 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + I NFR AP +S +G+ +++ +D +Y++D RL I+ Sbjct: 228 K-RRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYAIDAGGGEPRRLAQNSSIDTEP 286 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y+PD I F SDR G Q+Y M G +R++ + P SP G +A+ Sbjct: 287 VYAPDGKNIYFVSDRGGAPQIYRMPVTGGGAERVTFTGTYN-ISPAISPDGRWLAYISRV 345 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR- 426 F + V++ + + + ++P+++P+ R ++++ + G L + ++G+ Sbjct: 346 SGAFKLHVLELASGAVTAITDTTADESPSFAPNSRLIVYATQSQGR--EALMTATVDGKV 403 Query: 427 NETLINTPAYASDPQWVGF 445 L +P W F Sbjct: 404 KARLAGQNGDIREPGWGPF 422 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 14/191 (7%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 FS R + + ++ D + + IS ++SP+ SQI + S Sbjct: 158 AFS---TRITYVTKAAQRYQLWVADADGENAQSALASPEPIISPAWSPNGSQIAYVSFES 214 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 K +Y ++R+ + S P WSP G +A T + + G + Sbjct: 215 RKPVVYTHDVATG-KRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYAIDAGGGEP 273 Query: 384 RLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPA 435 R L ++S++ P ++P G+++ F + G ++Y + + G + +PA Sbjct: 274 RRLAQNSSIDTEPVYAPDGKNIYFVSDRGG--APQIYRMPVTGGGAERVTFTGTYNISPA 331 Query: 436 YASDPQWVGFM 446 + D +W+ ++ Sbjct: 332 ISPDGRWLAYI 342 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 12/164 (7%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R++A S D + I FVS+ + + M G +T + Sbjct: 274 RRLAQNSSIDTEPVYAPDG----KNIYFVSDRGGAP----QIYRMPVTGGGAERVTFTG- 324 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P SP+ + +AY + ++++++ + +P F+ N + Sbjct: 325 TYNISPAISPDGRWLAYIS-RVSGAFKLHVLELASGAVTAI--TDTTADESPSFAPNSRL 381 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + Q + + + RL + P Q Sbjct: 382 IVYATQSQGREALMTATVDGKVKARLAGQNGDIREPGWGPFQKQ 425 >gi|153832465|ref|ZP_01985132.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio harveyi HY01] gi|148871260|gb|EDL70132.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio harveyi HY01] Length = 450 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 108/458 (23%), Positives = 198/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + ++ G + HA +++ + P+++ K+ + L +S V++ Sbjct: 1 MIKRLLLGMFVLLGSLTSVAHAALELVITDGIDSARPIAVVPFKWEGSEPLPTDISAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q N + F W LG L+TG + K + V ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNYVVNYQL 119 Query: 131 WDVKDRKQIIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGE 169 DV + GK R+ AH ISD +Y+ +TGE Sbjct: 120 VDVVRGQLTGGKSKALGGDGELVLSKDHVLFNKVATVEGPRMREYAHRISDLVYEQLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ QK+AY Sbjct: 180 RGAFMTRIAYVVVN-DKDNFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ ++I ++ APRFS +G + + + K ++ +Y++DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGSQLALVLSKTGSLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 KTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLGSGSTNRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 YNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|197336086|ref|YP_002155723.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio fischeri MJ11] gi|226705896|sp|B5FD05|TOLB_VIBFM RecName: Full=Protein tolB; Flags: Precursor gi|197317576|gb|ACH67023.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio fischeri MJ11] Length = 450 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 111/458 (24%), Positives = 201/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L ++ F A +++ + P+ I K+ +L +S ++S Sbjct: 1 MLKRWILTLFVVCLGFSQVAKAELELVITEGIDSARPIGIVPFKWHGEGKLPQDISAIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ I + Q DS ++ W +G +VTG V + + V ++L Sbjct: 61 SDLQRSGKFSPIPTNKMPQTPYK-DSDINYEAWTKMGVDAIVTGEVKLNAQGKYEVTYKL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + ++ K S RK AH ISD +Y+ +TGE Sbjct: 120 IDVVRGQLTKGQSKALDESGKLVLTRDHILVNKVASLSTKQLRKYAHRISDVVYEKLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ I P +SP+ +K+AY Sbjct: 180 RGAFLTRIAYVVVN-DKAQYPYQLRIADYDGYNERLVLKSKQPI-MSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++++ ++++M+ + + I ++ APRFS +G + I + K ++ IY VDL Sbjct: 238 SFENRKS-QIFIMNIYTGK-RELIASYPRHNGAPRFSHDGDKLAIVLSKSGSLQIYVVDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T N ++PD+ ++F SDR GK Q+Y + KR++ + Sbjct: 296 KTKKMSQITRGRANNTEPFWAPDNKSLIFTSDRGGKPQIYRVNLGDGSTKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G I S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKYIVMVNRSETGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 Y--RKQNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|117619070|ref|YP_858094.1| beta-propeller repeat-containing to-pal system protein TolB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166988073|sp|A0KP93|TOLB_AERHH RecName: Full=Protein tolB; Flags: Precursor gi|117560477|gb|ABK37425.1| Tol-Pal system beta propeller repeat protein TolB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 441 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 205/449 (45%), Gaps = 23/449 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 I ++ S A + + + P+++A K+ +L ++EVVS Sbjct: 1 MIRKVFFALVGCLLLGQSAQAALDIVITGGIDSARPIAVAPFKWEGNGQLPQDIAEVVSN 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F +++ Q + I F W S G + +V G + G ++ F L Sbjct: 61 DLMRSGKFKPLARGQMPQTPSTSGEI-NFAPWASQGVEAVVVGSIAAVGDGTYKINFELV 119 Query: 132 DVKDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 DV + + + A R+ AH ISD +Y+ +TGE+G F +R+ + Sbjct: 120 DVLKGQLAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAY 179 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS + L + D DG N + L SR+ L P +SP+ K+AY +++++ + Sbjct: 180 VSVQQGT-QFPYQLRIADYDGYNEKTLLRSREP-LMSPAWSPDGSKLAYVSFENQKS-EI 236 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D + I +FR + AP +S +G+R I + KD + ++Y VD+ S R+T Sbjct: 237 YVQDIYT-QQRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTT 295 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + I+ S+ PD ++F S+R GK Q+Y + +R++ + E++ +P G Sbjct: 296 SRVIDTEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGA-SITPDGK 354 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 ++ ++ I + + +L + + ++P+ +P+G +I++ G L Sbjct: 355 IMVMVTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLAL- 413 Query: 420 SIDLNGRNETLINT-PAYASDPQWVGFMD 447 + +GR + ++ T P W F++ Sbjct: 414 -VSTDGRFKAVLPTSSGEIRAPAWSPFLN 441 >gi|301384814|ref|ZP_07233232.1| translocation protein TolB [Pseudomonas syringae pv. tomato Max13] gi|302063532|ref|ZP_07255073.1| translocation protein TolB [Pseudomonas syringae pv. tomato K40] gi|302130604|ref|ZP_07256594.1| translocation protein TolB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016445|gb|EGH96501.1| translocation protein TolB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 433 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 213/441 (48%), Gaps = 15/441 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E+VS Sbjct: 1 MINLFRGLLVVLCFASAMVAAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|302187151|ref|ZP_07263824.1| translocation protein TolB [Pseudomonas syringae pv. syringae 642] gi|330936711|gb|EGH40899.1| translocation protein TolB [Pseudomonas syringae pv. pisi str. 1704B] gi|330950602|gb|EGH50862.1| translocation protein TolB [Pseudomonas syringae Cit 7] Length = 433 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 213/441 (48%), Gaps = 15/441 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E++S Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|253990433|ref|YP_003041789.1| translocation protein TolB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781883|emb|CAQ85047.1| periplasmic protein involved in the tonb-independent uptake of group colicins [Photorhabdus asymbiotica] Length = 451 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 103/449 (22%), Positives = 198/449 (44%), Gaps = 13/449 (2%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDE 60 LR F ++ +M +++ I + T HA V++ + P+ I K+ Sbjct: 11 LRRFHRDKGDMMKQAFKVMLSILMLWVTVAHAEVRIEITQGVDSARPIGIVPFKWTGASN 70 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 ++ +V DL+ S FN I Q+ T + W++LG +V G++ Sbjct: 71 APEEIGTIVGADLRNSGKFNPIDASRMPQQPTTASEV-TPAAWSALGIDAVVVGQIQPSA 129 Query: 121 KDRLRVEFRLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRIL 178 + ++L D ++ + F W R AHT SD++++ +TG KG F +R+ Sbjct: 130 DGSFLISYQLVDTAGAPGTVLAQNQFKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRLA 189 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 ++ ++ G L V D DG N ++ + L P +SP+ K+AY T++ Sbjct: 190 YIVKTN-GGKYPYELRVSDYDGYN-QFTVHRSPEPLMSPAWSPDGAKLAYVTFESGR--S 245 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++ T +++ +F AP FS +G + ++ K ++++Y +DL S ++T Sbjct: 246 ALVIQTLASGEVRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLSSAQIRQVT 305 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + N S+ PD+ +V+ SD+ G+ QLY + NG +R++ + + D S G Sbjct: 306 DGRSNNTEPSWMPDNQTLVYTSDQGGRPQLYKININGGAPQRLTWEGTQNQ-DADVSADG 364 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + K I + L + + P+ +P+G +I+S + G+ L Sbjct: 365 NFVVMVSSESGKQHIAKQDLATGAVQTLTDTFLDETPSIAPNGTMVIYSSTQG--LGTVL 422 Query: 419 YSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + +GR + L T P W ++ Sbjct: 423 QLVSTDGRFKARLPATDGQVKFPAWSPYL 451 >gi|118574585|sp|Q1GYT1|TOLB_METFK RecName: Full=Protein tolB; Flags: Precursor Length = 433 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 116/431 (26%), Positives = 211/431 (48%), Gaps = 15/431 (3%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDLQ 74 +L G + H + V + IA F + G+ ++ V+ DL+ Sbjct: 10 FFAFLLPFGMATGAAHGALTVEIVGGAAQQIPIAVVPFAQQGVIPGQQDTIANVIGADLR 69 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 RS +F ++ + ++ + +QDW ++ AQ L G + +RL+V FRL DV Sbjct: 70 RSGLFRVLETRGVANQPSDISQV-NYQDWAAIQAQALTIGNIETLPGNRLKVSFRLLDVY 128 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + Q++G ++ +P+ R AH I+D IYQ +TGE+G F +RI +VS+S + +L Sbjct: 129 KQSQLVGMEYNITPSQLRLTAHKIADVIYQKLTGEQGVFATRIAYVSKSGG----RYALQ 184 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D DG N + + S + I+ P +SP+ K+AY +++ + + + + + + Sbjct: 185 VADSDGYNPQTVVSSAEPII-SPVWSPDGTKLAYVSFEKKKP--IIYVQSLVSGQRTVLA 241 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF+ AP +S +GKR I + IYS++ ++LT T I+ ++SPD Sbjct: 242 NFKGNNSAPAWSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGR 301 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 I F SDR G Q+Y M S+G + R++ + P SP G +A+ + G +F + Sbjct: 302 YIYFTSDRGGSPQIYRMPSSGGEASRMTFEGSY-VVSPRLSPDGKSLAYIRRDGGQFRVA 360 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINT 433 + Q ++L + ++P+++P+GR L+ + + G L ++ +GR + L + Sbjct: 361 LQDLQTGQVQVLSDGPKDESPSFAPNGRMLLHATRVGGRGA--LAAVSADGRVKQRLSES 418 Query: 434 PAYASDPQWVG 444 +P W Sbjct: 419 GGDVREPAWGP 429 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +++I + S G+ L V S+G + + + E PVWSP G +A+ F +K Sbjct: 168 ATRIAYVSKSGGRYALQVADSDGYNPQTVVSSAE-PIISPVWSPDGTKLAYVSFEKKKPI 226 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I V Q +L N AP WSP G+ L S++YSI+ +G + Sbjct: 227 IYVQSLVSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHA--ANSQIYSINADGTGLQQL 284 Query: 432 N-------TPAYASDPQWVGF 445 P ++ D +++ F Sbjct: 285 TRTTAIDTEPTWSPDGRYIYF 305 >gi|238757962|ref|ZP_04619143.1| hypothetical protein yaldo0001_8380 [Yersinia aldovae ATCC 35236] gi|238703716|gb|EEP96252.1| hypothetical protein yaldo0001_8380 [Yersinia aldovae ATCC 35236] Length = 430 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 198/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + +HA V++ + P+ + K++ + Sbjct: 1 MKQAFRVALGFLVL-------WAAVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEE 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 54 IGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSY 112 Query: 125 RVEFRLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGAAGSILAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G + L V D DG N +++ Q L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPHELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKIAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A K++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 QTLANSAIKQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V SP G + Sbjct: 289 NNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-SPDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +G I + ++L + + P+ +P+G +I+S + G+ L + Sbjct: 348 LVSSNGGAQHIAKQDLETGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGAVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|257487004|ref|ZP_05641045.1| translocation protein TolB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626502|ref|ZP_06459456.1| translocation protein TolB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650948|ref|ZP_06482291.1| translocation protein TolB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488203|ref|ZP_07006239.1| beta propeller repeat-containing TolB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157261|gb|EFH98345.1| beta propeller repeat-containing TolB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323046|gb|EFW79135.1| translocation protein TolB [Pseudomonas syringae pv. glycinea str. B076] gi|320329682|gb|EFW85671.1| translocation protein TolB [Pseudomonas syringae pv. glycinea str. race 4] gi|330868618|gb|EGH03327.1| translocation protein TolB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877973|gb|EGH12122.1| translocation protein TolB [Pseudomonas syringae pv. glycinea str. race 4] gi|330892246|gb|EGH24907.1| translocation protein TolB [Pseudomonas syringae pv. mori str. 301020] gi|330988975|gb|EGH87078.1| translocation protein TolB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009354|gb|EGH89410.1| translocation protein TolB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 433 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 213/441 (48%), Gaps = 15/441 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E+VS Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|319786285|ref|YP_004145760.1| Tol-Pal system beta propeller repeat protein TolB [Pseudoxanthomonas suwonensis 11-1] gi|317464797|gb|ADV26529.1| Tol-Pal system beta propeller repeat protein TolB [Pseudoxanthomonas suwonensis 11-1] Length = 462 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 122/449 (27%), Positives = 216/449 (48%), Gaps = 16/449 (3%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTK--FVSIDE 60 + + L MK +L +L P A +++ N S + IA + Sbjct: 17 RMPKSLPMKASLRWFFLLACLLIPGLAAAQQQGLEIDIIGGNASALPIAVVPMPYEGGGG 76 Query: 61 LGG-KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 V++VV DL RS F + + ++ T I + W L LV GRV+ Sbjct: 77 APQTDVAKVVRDDLARSGQFRTLPEAQMVERPTRGGEI-NYPTWRQLRQDYLVVGRVLDA 135 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 G+ RVE+ L+DV ++++G + ++ R +AH I+D IY+ I G +G F +RI + Sbjct: 136 GEGGYRVEYELFDVGRGERLLGLAMTARASAMRDVAHQIADAIYEKILGVRGAFWTRIAY 195 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V+ + ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + + Sbjct: 196 VTANGSGSGMRYALVVADSDGWNPQVVVRSAEP-LLSPAWSPDGRKLAYVSFERGNS-SI 253 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ D A + + +FR + AP FS +G+R +S+ + +IY +DL S +LTN Sbjct: 254 YIQDIATG-ARELVSSFRGINSAPSFSPDGRRLALSLSRSGNPEIYVMDLGSKQLTQLTN 312 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I+ ++S D S I F SDR G+ Q+Y + S+G R++ + V S G Sbjct: 313 HFGIDTEPTWSADGSTIYFTSDRGGRPQIYQVPSSGGAASRVTFQGNYNATATV-SHDGK 371 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 IA + SG + I +M R + S ++P+++P+G LI++ ++ G Sbjct: 372 KIAMAQGSGNTYRIAMMDTSLGSPRWSTISTGSLDESPSFAPNGSMLIYAAREGGRG--V 429 Query: 418 LYSIDLNGR-NETLINTPAYASDPQWVGF 445 LY++ + R + L+ +P W + Sbjct: 430 LYAVSADARVRQRLVLADGDVREPAWSPY 458 >gi|269963138|ref|ZP_06177473.1| translocation protein TolB precursor [Vibrio harveyi 1DA3] gi|269832102|gb|EEZ86226.1| translocation protein TolB precursor [Vibrio harveyi 1DA3] Length = 450 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 106/458 (23%), Positives = 198/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + ++ G + HA +++ + P+++ K+ + L +S V++ Sbjct: 1 MIKRLLLGMFVLLGSLTSVAHAALELVITDGIDSARPIAVVPFKWEGSEPLPTDISAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q N + F W LG L+TG + K + V ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNYVVNYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + + K R+ AH ISD +Y+ +TGE Sbjct: 120 VDVVRGQLTGGNSKALGGDGELVLSKDHVLFNKVATVEGPRMREYAHRISDLVYEQLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ QK+AY Sbjct: 180 RGAFMTRIAYVVVN-DKDNFPYQLRVADYDGYNERLVLQSK-QPLMSPAWSPDGQKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ +++ ++ APRFS +G + + + K ++ +Y++DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKVTSYPRHNGAPRFSPDGSQLALVLSKTGSLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 KTRKLTQITRGRSNNTEPYWHPDGKSLIFTSDRGGKPQIYKVDLGSGSTNRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 YNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|157803974|ref|YP_001492523.1| translocation protein TolB [Rickettsia canadensis str. McKiel] gi|166229988|sp|A8EZF5|TOLB_RICCK RecName: Full=Protein tolB; Flags: Precursor gi|157785237|gb|ABV73738.1| hypothetical protein A1E_04055 [Rickettsia canadensis str. McKiel] Length = 444 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 159/445 (35%), Positives = 245/445 (55%), Gaps = 21/445 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQR 75 ++ I F + +A + P IA KF + +G V +V+S DL+ Sbjct: 4 IIYFILLLFSCTGYALETINIECGRADPTPIAVNKFDADTSTNNIVGHDVVKVISNDLKL 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F+ IS SF + T + P F W + A +LV G V K +L++ F LWD Sbjct: 64 SGLFHPISSASFIEDKTGIEDKPLFAAWRQINASLLVNGEVKKLESGKLKISFILWDTLL 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 KQ++G+ WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + + Sbjct: 124 EKQLVGEILEVPENLWRRAAHKIADKIYEKITGDAGYFDTKIVYVSESSSLPKIK-RIAL 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DGAN +YLT ++ PRF+ + K+ Y +Y + +Y D + + + + Sbjct: 183 MDYDGANNKYLTNGTS-LVLTPRFARSVDKIFYVSYATKRRALIYEKDLKTGKES-IVSD 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + APRFS +G++A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 FAGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGKK 300 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----- 370 IV+ SDR G QLY+M S+GS+ KRIS SY P WSP+GD IAFTK + + Sbjct: 301 IVYNSDRNGVPQLYIMNSDGSNVKRISFGG-GSYAAPSWSPRGDYIAFTKITRGEDGSKT 359 Query: 371 FAIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSID 422 F IG+MK D + ER++ +++P WSP+GR ++F+ + +K+++ID Sbjct: 360 FNIGIMKAYPQDDENSERIITSGYLVESPCWSPNGRVIMFAKGWPSRAKVPGKNKIFAID 419 Query: 423 LNGRNETLINTPAYASDPQWVGFMD 447 L G NE I TP ASDP+W ++ Sbjct: 420 LTGHNEREIITPEDASDPEWSMVLN 444 >gi|66044663|ref|YP_234504.1| translocation protein TolB [Pseudomonas syringae pv. syringae B728a] gi|75502949|sp|Q4ZWK6|TOLB_PSEU2 RecName: Full=Protein tolB; Flags: Precursor gi|63255370|gb|AAY36466.1| TolB, N-terminal:TolB, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330968885|gb|EGH68951.1| translocation protein TolB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 433 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 212/441 (48%), Gaps = 15/441 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + L ++E++S Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGSVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|126733593|ref|ZP_01749340.1| translocation protein TolB precursor [Roseobacter sp. CCS2] gi|126716459|gb|EBA13323.1| translocation protein TolB precursor [Roseobacter sp. CCS2] Length = 438 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 155/421 (36%), Positives = 238/421 (56%), Gaps = 10/421 (2%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGG----KVSEVVSKDLQRSDVFNLISQDS 86 + + +++ P++ A F + +S +V +DL + +F + + Sbjct: 20 AQNGPLRLTITDGVIEPITFAVPSFEAESPAAQQAASDISRLVVQDLAGTGLFREVPATA 79 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII-GKKFF 145 F ++++ F DW ++ AQ L+ G V G ++L V+FRL+DV +++ G +F Sbjct: 80 FISQVSSFVQPVAFPDWRAINAQALIVGAVNVNG-NQLSVKFRLYDVFSGQELGQGLQFA 138 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + WR++ H +SD +Y ITGE G F+SR++FVSES + L +MD DGAN+++ Sbjct: 139 GTVDGWRRMGHKVSDAVYSRITGEGGYFDSRVVFVSESGPKDNRQKRLAIMDFDGANVQF 198 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT S I+ PRFSPN +V Y +++ R+ +++ + M +PRF Sbjct: 199 LTDSSS-IVLAPRFSPNGDRVLYTSFESG-FPRINVLNVANVGRQQLQTAPGEMAFSPRF 256 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ + S+ DIY DL + RLT+ I + S SPD SQIVFESDR G Sbjct: 257 SRDGRQVIYSLSNGGNTDIYRTDLSTGQHVRLTSAPSIETAPSLSPDGSQIVFESDRSGN 316 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 +QLYVM +NG + +RIS + Y PVWSP+GDL+AFTK + +F IGVM+ DGS+ERL Sbjct: 317 QQLYVMSANGGEARRISF-GQGRYGTPVWSPRGDLVAFTKQNAGRFHIGVMRIDGSEERL 375 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVG 444 L + PTWSP+GR ++FSR+ G G S +YS+D++GRN + ASDP W Sbjct: 376 LTSSFLDEGPTWSPNGRVIMFSRETQGAGGTSSMYSVDISGRNLKAVPLQGGASDPSWGP 435 Query: 445 F 445 Sbjct: 436 L 436 >gi|330872647|gb|EGH06796.1| translocation protein TolB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 433 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 211/441 (47%), Gaps = 13/441 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N+ L ++L G + V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASGMVAAEEK-NILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLNGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|209695365|ref|YP_002263294.1| translocation protein TolB [Aliivibrio salmonicida LFI1238] gi|226705863|sp|B6EGK3|TOLB_ALISL RecName: Full=Protein tolB; Flags: Precursor gi|208009317|emb|CAQ79583.1| TolB protein precursor, periplasmic component [Aliivibrio salmonicida LFI1238] Length = 450 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 113/458 (24%), Positives = 199/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + F A +++ + P+ I K+ +L +S ++S Sbjct: 1 MLKRWILPLFIACLSFSQIAKAELELVITEGVNSARPIGIVPFKWHGEGKLPQDISAIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + + Q D+ ++ W +G +VTG V + V ++L Sbjct: 61 SDLQRSGKFSPLPTNKMPQTPYK-DADINYEAWTKMGVDAIVTGEVKVNAAGKYEVSYKL 119 Query: 131 WDVKDRKQIIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGE 169 DV + GK S RK AH ISD +Y+ +TGE Sbjct: 120 IDVVRGQLTKGKSKGLSNSGELVLTQDHILVNKIATLSKTQLRKYAHRISDVVYEKLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 KG F +RI +V + S L + D DG N R + S+ I P +SP+ +K+AY Sbjct: 180 KGAFLTRIAYVVVNDKS-QHPYQLRIADYDGYNERLVLKSKQPI-MSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++++ +V++M+ + + I ++ APRFS +GK I + K ++ +Y V+L Sbjct: 238 SFENRRS-QVFIMNIYTGK-RELIASYPRHNGAPRFSHDGKELAIVLSKTGSLQVYIVNL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 Q+ ++T N ++PD+ ++F SDR GK Q+Y + KR++ + Sbjct: 296 QTKKMRQITRGRSNNTEPFWAPDNKSLIFTSDRGGKPQIYRVNLEDGSTKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G I S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKYIVMVNRSETGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 Y--RKQNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|329848730|ref|ZP_08263758.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis biprosthecum C19] gi|328843793|gb|EGF93362.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis biprosthecum C19] Length = 449 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 152/430 (35%), Positives = 235/430 (54%), Gaps = 8/430 (1%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFT---KFVSIDELGGKVSEVVSKDLQRSD 77 L + G ++ + A+ P++IA S + +G ++++VV DLQ S Sbjct: 23 LTAMAGSVAAQSQGPLRGTVDEADVQPLAIAIMISGTDPSGNTIGEQLTKVVINDLQSSG 82 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F I +F + + +S P +++W ++ AQ L GR +++ + R+WD+ +K Sbjct: 83 YFAPIDPRAFIETSLDVNSPPTWENWTAINAQFLANGRAYINANGQVQADVRVWDIYSQK 142 Query: 138 QII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 + G +P WR++AH +D IY+ +TGEKG F++RI FV+ES G L +M Sbjct: 143 EAFPGAGHMITPEQWRRLAHKHADAIYERLTGEKGYFDTRIAFVAESGKRGDRVKRLAMM 202 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D+DGAN +YL + PRFS + ++AY D R++L D R +++ Sbjct: 203 DQDGANPQYLAVEGSGKIITPRFSADGTEIAYMALSA-DSARIFLYDLEA-RRGEQVAQV 260 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R M APR+S +G + SV + DIY +L + + RLT+ I+ S S+S D S+I Sbjct: 261 RGMAFAPRYSPDGTKLAFSVSQGANSDIYVTNLNTRSLSRLTSDPAIDTSPSFSADGSRI 320 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G Q+YVM ++GS +RI+ Y PV+SP+GDLIAFTK S +F+IGVM Sbjct: 321 AFTSDRGGSPQIYVMGADGSGARRITFGG-GLYSTPVFSPKGDLIAFTKQSKGRFSIGVM 379 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 DGS ERLL + PTW+P+GR ++F R+ G L+ +++NGR E + Sbjct: 380 NPDGSGERLLTSSYLEEGPTWAPNGRYIMFFREPPGGM-PSLWMVEVNGRIERPVPYTGG 438 Query: 437 ASDPQWVGFM 446 ASDP W + Sbjct: 439 ASDPAWSPLL 448 >gi|86146493|ref|ZP_01064816.1| translocation protein TolB precursor [Vibrio sp. MED222] gi|218709110|ref|YP_002416731.1| translocation protein TolB [Vibrio splendidus LGP32] gi|254764845|sp|B7VMJ2|TOLB_VIBSL RecName: Full=Protein tolB; Flags: Precursor gi|85835756|gb|EAQ53891.1| translocation protein TolB precursor [Vibrio sp. MED222] gi|218322129|emb|CAV18243.1| Protein tolB precursor [Vibrio splendidus LGP32] Length = 450 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 109/458 (23%), Positives = 200/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L V + HA +++ + P++I ++ L VS V++ Sbjct: 1 MLKKLLLSFVFLIATSSQFAHAALELVITDGINSARPIAIVPFRWEGAGPLPHDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ ++ Q + + F W +LG L+TG + K + + V ++L Sbjct: 61 SDLQRSGKFSPVATSKMPQTPYSETEV-NFDAWTNLGVDSLLTGSITKNAEGQYVVNYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + KK R+ AH ISD +Y+ +TGE Sbjct: 120 IDIVRGQLTKGQSRALSDEGQLVLSKDHVLFNKKATVPGKRLREYAHRISDLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 KG F +RI +V + L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 180 KGAFLTRISYVVVN-DKDKYPYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ +++ ++ APRFS +GK + + K ++ +Y++DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKVTSYPRHNGAPRFSPDGKTLALVLSKTGSLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 S ++T N + PD ++F SDR GK Q+Y + + + RI+ + Sbjct: 296 ASRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KTNVLSMVSIDGRFKARLPATNGRVRAPSWSPFL 450 >gi|238920738|ref|YP_002934253.1| translocation protein TolB [Edwardsiella ictaluri 93-146] gi|259533853|sp|C5BEL8|TOLB_EDWI9 RecName: Full=Protein tolB; Flags: Precursor gi|238870307|gb|ACR70018.1| Tol-Pal system beta propeller repeat protein TolB, putative [Edwardsiella ictaluri 93-146] Length = 430 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 199/432 (46%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L+V + + + +HA V++ + P+ + K++ + +++ DL+ S Sbjct: 7 LMVGLLVLWASVLHAEVRIVITQGVDSARPIGVVPFKWMGPGTAPENIGGIIAADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ + + W +LG +V G+V V ++L D Sbjct: 67 KFNPIDASRMPQQPSAAAEVS-PAAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTSGNP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++ ++ + R AHT SD++++ +TG KG F +RI +V ++ G L V Sbjct: 126 GSVLVQNQYKVTGQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N +++ + L P +SP+ K+AY T++ ++ T + A +++ + Sbjct: 185 ADYDGYN-QFVVHRSAEPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLSNGAIRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F +P FS +G + ++ K ++++Y +DL S A ++T+ N ++ PDS Sbjct: 242 FPRHNGSPAFSPDGSKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPTWFPDSQN 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F SD+ G+ Q+Y M NG +R++ + + V SP G + S I Sbjct: 302 LAFTSDQAGRPQIYKMNINGGVAQRLTWEGSQNQDAEV-SPDGKFLVMVSSSAGAQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + + ++L + + P+ +P+G +I+S + GS L + ++GR + L T Sbjct: 361 LDLGTNATQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGSVLQLVSIDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|330964830|gb|EGH65090.1| translocation protein TolB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 433 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 211/441 (47%), Gaps = 13/441 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N+ L ++L G + V + S +P+++ + + L ++E++S Sbjct: 2 INLFRGLLVVLCFASGMVAAEEK-NILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|293397222|ref|ZP_06641495.1| tol-Pal system beta propeller repeat protein TolB [Serratia odorifera DSM 4582] gi|291420242|gb|EFE93498.1| tol-Pal system beta propeller repeat protein TolB [Serratia odorifera DSM 4582] Length = 430 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 101/445 (22%), Positives = 195/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K+ Sbjct: 1 MKQAFRVALGFLIL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V ++V+ DL+ S FN I Q+ T + W +LG +V G+V Sbjct: 54 VGKIVAADLRNSGKFNPIDAARMPQQPTTASEV-TPAAWTALGIDAVVVGQVQPGADGGY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 LVSYQLVDTSGSPGTVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPYELRVADYDGYN-QFVVHRSPQPLMSPTWSPDGSKLAYVTFESGR--SALVV 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A ++I +F AP FS +G R ++ K ++++Y ++L S +LT+ Sbjct: 229 QTLSNGAIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQITQLTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N ++ PD + F SD+ G+ Q+Y + ++G +R++ + + V S G + Sbjct: 289 NNTEPTWFPDGQSLAFTSDQGGRPQIYKISASGGAAQRLTWEGGQNQDSEV-SADGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I ++L + + P+ +P+G +I+S + GS L + Sbjct: 348 MVTTNNGVQHIAKQDLGSGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|54309711|ref|YP_130731.1| translocation protein TolB [Photobacterium profundum SS9] gi|67461961|sp|Q6LP47|TOLB_PHOPR RecName: Full=Protein tolB; Flags: Precursor gi|46914149|emb|CAG20929.1| putative TolB protein [Photobacterium profundum SS9] Length = 449 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 116/469 (24%), Positives = 207/469 (44%), Gaps = 43/469 (9%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSI 58 M R+ + LC+ L+ F A +++ + P+ I + Sbjct: 1 MMKRWMM--------GLCIALLS----FSQIAQAELELVITEGIDSARPIGIIPFTWEGE 48 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 +L +S V++ DLQRS F+ I+ Q + + I ++ W ++G LVTG+V K Sbjct: 49 GKLPTDISSVIASDLQRSGKFSPIATSKMPQTPDSEEQI-DYRAWTAMGVDALVTGKVTK 107 Query: 119 EGKDRLRVEFRLWDVKDRKQ--------------------IIGKKFFSSPASWRKIAHTI 158 + V ++L DV + ++ + R+ AH I Sbjct: 108 NAEGNYVVNYQLVDVVRGQLTSGESRGLANGELVLTKDHLLVNNRAIVKETRLRQYAHRI 167 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 SD +Y+++TGE+G F +RI +V S L V D DG N R + SR Q L P Sbjct: 168 SDVVYEALTGEQGAFLTRIAYVVIDDKS-KHPYQLRVADYDGFNERLVLKSR-QPLMSPA 225 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ K+AY +++++ ++Y+MD + + ++ +PRFS +GK+ + + K Sbjct: 226 WSPDGSKLAYVSFENQQA-QIYIMDIYKGT-RELVTSYPRHNGSPRFSPDGKKLALVLSK 283 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 ++ IY DL++ ++T+ N A + PD ++F SDR G+ Q+Y + + Sbjct: 284 TGSLQIYIKDLKTKKLTQITSGRANNTEAFWDPDGKSLIFTSDRGGQPQIYRVNLADNST 343 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 KR++ + +P G + S F I ++L + ++P+ + Sbjct: 344 KRLTWQGSQNLGGQ-LTPDGRYLVMVNRSDTGFNIAKQDLKTGAVQILTKTFLDESPSIA 402 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 P+G +I+S + L SID GR + L T P W F+ Sbjct: 403 PNGGMVIYSSVNNKSNELSLVSID--GRFKARLPTTNGRVRAPSWGPFL 449 >gi|59711569|ref|YP_204345.1| translocation protein TolB [Vibrio fischeri ES114] gi|67461862|sp|Q5E689|TOLB_VIBF1 RecName: Full=Protein tolB; Flags: Precursor gi|59479670|gb|AAW85457.1| periplasmic protein TolB [Vibrio fischeri ES114] Length = 450 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 202/458 (44%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L ++ F A +++ + P+ I K+ +L +S ++S Sbjct: 1 MLKRWILTLFVVCLGFSQVAKAELELVITEGIDSARPIGIVPFKWHGEGKLPQDISAIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ ++ + Q DS ++ W +G +VTG V + + V ++L Sbjct: 61 SDLQRSGKFSPVATNKMPQTPYK-DSDINYEAWTKMGVDAIVTGEVKLNAQGKYEVTYKL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + ++ K S RK AH ISD +Y+ +TGE Sbjct: 120 IDVVRGQLTKGQSKALDESGKLVLTRDHILVNKVASLSTKQLRKYAHRISDVVYEKLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ I P +SP+ +K+AY Sbjct: 180 RGAFLTRIAYVVVN-DKAQYPYQLRIADYDGYNERLVLKSKQPI-MSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++++ ++++M+ + + I ++ APRFS +G + I + K ++ IY VDL Sbjct: 238 SFENRKS-QIFIMNIYTGK-RELIASYPRHNGAPRFSHDGDKLAIVLSKSGSLQIYVVDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T N ++PD+ ++F SDR GK Q+Y + KR++ + Sbjct: 296 KTKKMSQITRGRANNTEPFWAPDNKSLIFTSDRGGKPQIYRVNLGDGSTKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G I S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKYIVMVNRSETGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 Y--RKQNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|71737813|ref|YP_275907.1| translocation protein TolB [Pseudomonas syringae pv. phaseolicola 1448A] gi|119371049|sp|Q48FD0|TOLB_PSE14 RecName: Full=Protein tolB; Flags: Precursor gi|71558366|gb|AAZ37577.1| tolB protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 433 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 112/441 (25%), Positives = 213/441 (48%), Gaps = 15/441 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E+VS Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R+S + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVSFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|254294750|ref|YP_003060773.1| Tol-Pal system beta propeller repeat protein TolB [Hirschia baltica ATCC 49814] gi|254043281|gb|ACT60076.1| Tol-Pal system beta propeller repeat protein TolB [Hirschia baltica ATCC 49814] Length = 454 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 163/439 (37%), Positives = 237/439 (53%), Gaps = 25/439 (5%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQRSDVFNLISQ 84 P V + + +A F +G +++V+ DL S +F +IS Sbjct: 19 PAYAQDENVVNITKGTFEAMPMAIPDFSGDTTEAATVGSDIAQVIRNDLAGSGLFRMISP 78 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 D+F +K + +P F DW + A L+ G+ I + + +FRL+DV KQ+ +++ Sbjct: 79 DAFVEKNLDIAVLPTFADWKVINADALLVGKTIIDPTGSMATQFRLFDVFTGKQLYSQEY 138 Query: 145 FSS-PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 S SWR++AH I+DDIY+ +T + G F+SRI+++ ES L +MD+DGAN Sbjct: 139 TVSSRDSWRRMAHIIADDIYEQLTPDSGYFDSRIVYIDESGPKTKRVRRLAIMDQDGANP 198 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDE------DILRVYLMDTRIDRAPKRIGNFR 257 LT R ++ PRF P+ Q + Y + + RVYL D R + IG++ Sbjct: 199 ENLTDGRIEV-QTPRFDPSSQTIIYTALVPDARNPLLERRRVYLFDIETGRQ-EVIGDYG 256 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 A RF+ +G +S+ +D DIY +DL RLTN L I+ S SYSPD +IV Sbjct: 257 LTSFAARFAPDGNSVAMSLAEDGNSDIYILDLARRQRTRLTNNLAIDTSPSYSPDGKEIV 316 Query: 318 FESDREGKEQLYVMQSNGSDQK----------RISQDKEASYFDPVWSPQGDLIAFTKFS 367 F SDR G QLY+M ++GSD+ RI+ + SY PVWSP+GDLIAFTK S Sbjct: 317 FTSDRGGSPQLYIMNADGSDRNCENGPRNKVCRITF-GQGSYSTPVWSPRGDLIAFTKQS 375 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 +F IGV+K DG+ ER L D ++ PTWSP+GR +IF ++ G L+SIDL+GRN Sbjct: 376 KGRFEIGVIKTDGTGERSLTSDYLVEGPTWSPNGRVIIFFKEARGGR-PSLWSIDLSGRN 434 Query: 428 ETLINTPAYASDPQWVGFM 446 + T ASDP W + Sbjct: 435 LKRVPTRGDASDPAWSPVL 453 >gi|89075797|ref|ZP_01162185.1| translocation protein TolB precursor [Photobacterium sp. SKA34] gi|89048529|gb|EAR54104.1| translocation protein TolB precursor [Photobacterium sp. SKA34] Length = 442 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 207/451 (45%), Gaps = 27/451 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVV 69 + LCL L+ + F HA +++ + P+ + ++ +L +S V+ Sbjct: 3 RWIMGLCLALLSVSQF----AHAELELVITDGVDSARPIGVVPFQWEGEGKLPTDISAVI 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DLQRS F+ + + Q N I + W+ +G +VTG ++K V ++ Sbjct: 59 ASDLQRSGKFSPVPESKLPQLPHNESQI-DYSAWSKMGVDAVVTGTIVKNQDGNYTVNYQ 117 Query: 130 LWDVKDRKQ-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 L D+ K ++ + P R+ AH ISD IYQ +TGE+G F +R Sbjct: 118 LVDIVKGKLAAGTEGAAKGDYLLLNNQASVKPNRMRQYAHRISDLIYQKLTGERGAFLTR 177 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V + S L V D DG N R + S+ Q L P +SP+ K+AY +++ Sbjct: 178 IAYVDNNRSS-KFPYQLRVADYDGYNERVVLKSK-QPLMSPAWSPDGSKLAYVSFESGKA 235 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 ++Y++D + + N+ +P+FS +G + + + + ++ IY DL++ + Sbjct: 236 -QIYVLDIYKGT-REVVANYPRHNGSPQFSPDGTKLAMVLSESGSLQIYIKDLKTKQLRQ 293 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT+ N A ++PD + F SDR G+ Q+Y + D +R++ + P +P Sbjct: 294 LTHGRANNTEAVWAPDGQSLYFTSDRGGRPQVYHLDLATGDTQRVTWQGAQN-MGPQITP 352 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G + S + I ++L + ++P+ +P+G +I+S ++ T Sbjct: 353 DGRYLVVVNRSDSGYNIAKQDLKTGAMQILTKARLAESPSIAPNGSMIIYSSAQNSGT-Y 411 Query: 417 KLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +L + ++GR + L +T P W F+ Sbjct: 412 ELSLVSIDGRFQARLPSTSKRVRAPSWGPFL 442 >gi|238785869|ref|ZP_04629837.1| hypothetical protein yberc0001_38250 [Yersinia bercovieri ATCC 43970] gi|238713239|gb|EEQ05283.1| hypothetical protein yberc0001_38250 [Yersinia bercovieri ATCC 43970] Length = 430 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 198/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K++ + Sbjct: 1 MKQAFRVALGFLVL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEE 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 54 IGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSY 112 Query: 125 RVEFRLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G + L V D DG N +++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 QTLANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V SP G + Sbjct: 289 NNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-SPDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +G I ++L + + P+ +P+G +I+S + G+ L + Sbjct: 348 LVSSNGGAQHIAKQDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGAVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|323496600|ref|ZP_08101653.1| translocation protein TolB [Vibrio sinaloensis DSM 21326] gi|323318346|gb|EGA71304.1| translocation protein TolB [Vibrio sinaloensis DSM 21326] Length = 439 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 102/446 (22%), Positives = 195/446 (43%), Gaps = 29/446 (6%) Query: 23 LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLI 82 ++ F + + + + P++I K+ +L VS +++ DLQRS F+ + Sbjct: 1 MMSAFQVANAALELVITDGIDSARPIAIVPFKWEGTSKLPQDVSAIIASDLQRSGKFSPV 60 Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ---- 138 Q N + F W LG L+TG + + + + ++L DV + Sbjct: 61 PTSKMPQTPYNETEV-NFDAWTGLGVDALLTGTITQNAEGNYVINYQLVDVIRGQLTQGQ 119 Query: 139 -----------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 + K+ R+ AH ISD +YQ +TGE+G F +RI +V Sbjct: 120 SKALSTDGQLVLSKDHVLFNKRATVPGERLREYAHRISDLVYQELTGERGAFLTRIAYVV 179 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + L V D DG N R + S+ Q L P +SP+ QK+AY ++ + +++ Sbjct: 180 VNDKDKKYPYQLRVSDYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYVSFQNGQA-EIFI 237 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 M+ +++ ++ APRFS +G + + K ++ +Y++DL++ ++T Sbjct: 238 MNIYTGEQ-EKVTSYPRHNGAPRFSPDGNTLALVLSKTGSLQVYTLDLKTRKLTQITRGR 296 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N + PD ++F SDR G+ Q+Y +Q + KR++ + +P G + Sbjct: 297 SNNTEPYWHPDGKSLIFTSDRGGRPQIYQVQLANGETKRLTWQGSQNLGGQ-ITPDGRFL 355 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 S F + + ++L + ++P+ +P+G +I+S + + L + Sbjct: 356 VMVNRSNSGFNLAKQDLETGAVQILTKTLLDESPSIAPNGGMVIYSSIYN--KTNVLSMV 413 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 ++GR + L T P W F+ Sbjct: 414 SIDGRFKARLPATNGRVRAPAWSPFL 439 >gi|269103008|ref|ZP_06155705.1| TolB protein precursor [Photobacterium damselae subsp. damselae CIP 102761] gi|268162906|gb|EEZ41402.1| TolB protein precursor [Photobacterium damselae subsp. damselae CIP 102761] Length = 449 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 105/459 (22%), Positives = 200/459 (43%), Gaps = 35/459 (7%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVV 69 + LCL+L+ + F A +++ + P+++ K+ +L +S VV Sbjct: 3 RWIMGLCLMLLTVSQF----ARAELELVITDGVDSARPIAVVPFKWEGQGKLPTDISAVV 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DLQRS F+ + Q+ ++ I + W +G LV G V ++ V+++ Sbjct: 59 ASDLQRSGKFSPVPVAKMPQQPSDESQI-NYNAWTQMGVDALVMGTVSQDANGNYVVQYQ 117 Query: 130 LWDVKDRKQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 L D+ + ++ + P R+ AH ISD +YQ +TGE Sbjct: 118 LIDLVKGQLQSKQTTADANGQVVTEKNYILVNNRATVKPNRLRQYAHRISDVVYQKLTGE 177 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V+ S L V D DG N R + S+ I P +SP+ K+AY Sbjct: 178 RGAFLTRIAYVAMEEKS-KFPYQLRVADYDGYNERTVLKSQQPI-MSPAWSPDGSKLAYV 235 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++++ ++Y+M+ + + ++ +PRFS +G + + + K ++ IY DL Sbjct: 236 SFENNKA-QIYIMNIYKGT-RELVSDYPRHNGSPRFSPDGSKLALVLSKSGSLQIYIKDL 293 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + ++T N + P + ++F SDR GK Q+Y + +R++ + Sbjct: 294 NTKQLTQVTRGRANNTEPFWDPTGNSLIFTSDRGGKPQIYRVNLADGQTQRLTWQGSQNL 353 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S + I ++L + ++P+ +P+G +I+S Sbjct: 354 GGQ-LTPDGRYLVMVNRSDTGYNIAKQDLKTGAVQVLTKTFLDESPSIAPNGSMIIYSSS 412 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFMD 447 L SID GR + + + + P W F++ Sbjct: 413 IGNSNELSLVSID--GRFKARLPSASDRVRSPAWGPFLN 449 >gi|296447816|ref|ZP_06889729.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus trichosporium OB3b] gi|296254675|gb|EFH01789.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus trichosporium OB3b] Length = 438 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 247/406 (60%), Gaps = 5/406 (1%) Query: 42 SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 S + PV++A F DE ++ V+ + RS I ++ D P Sbjct: 38 SGGFQPVAVAVAPFAG-DEAARTLTSVIVNNFNRSVFLRPIEPGGRPEQAAASDGAPELD 96 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 + SLGAQ +VTGR + RL+ EFRL+DV +Q G+++ + A R++AH +SD Sbjct: 97 LYRSLGAQYVVTGRAQRGPDGRLKTEFRLFDVATGEQAAGQQYVTEAAFARRVAHLVSDA 156 Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 ++ ITGEKG F++R++FV ES + L +MD+DGAN+RYL+ D ++ PRFSP Sbjct: 157 VFTRITGEKGFFDTRVVFVDESGPKERRRKRLAIMDQDGANVRYLSRG-DDLVVTPRFSP 215 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + Q V Y ++ D +V L+ + + +GNF M APRFS +G++ ++S+ + + Sbjct: 216 SSQDVTYMSFGAGDP-KVLLLSIESGQ-REVVGNFPGMTFAPRFSPDGQKIVMSLSQGAS 273 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++Y++DL+S T RLT+T I+ S SYSP ++IVFESDR G +Q+YVM +NG +RI Sbjct: 274 TNLYAMDLRSRTTTRLTDTNAIDTSPSYSPSGAEIVFESDRGGSQQIYVMSANGGGARRI 333 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 S Y PVWSP+GD IAFT+ S F IGVMK DGS ER+L E + + PTW+P+G Sbjct: 334 SF-GPGHYSTPVWSPKGDYIAFTRQSSGAFGIGVMKPDGSGERILTEGFHNEGPTWAPNG 392 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 L+F R+ G +G+K++ +D+ GR+E + TP+YASDP W D Sbjct: 393 LFLMFFREPGGQSGAKIHMVDVFGRSEFPVPTPSYASDPSWGPLQD 438 >gi|22126931|ref|NP_670354.1| translocation protein TolB [Yersinia pestis KIM 10] gi|45440866|ref|NP_992405.1| translocation protein TolB [Yersinia pestis biovar Microtus str. 91001] gi|51595503|ref|YP_069694.1| translocation protein TolB [Yersinia pseudotuberculosis IP 32953] gi|108806599|ref|YP_650515.1| translocation protein TolB [Yersinia pestis Antiqua] gi|108813034|ref|YP_648801.1| translocation protein TolB [Yersinia pestis Nepal516] gi|145599837|ref|YP_001163913.1| translocation protein TolB [Yersinia pestis Pestoides F] gi|149366876|ref|ZP_01888910.1| TolB colicin import protein [Yersinia pestis CA88-4125] gi|153948506|ref|YP_001401831.1| translocation protein TolB [Yersinia pseudotuberculosis IP 31758] gi|162418362|ref|YP_001605922.1| translocation protein TolB [Yersinia pestis Angola] gi|165924647|ref|ZP_02220479.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. F1991016] gi|165938286|ref|ZP_02226844.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. IP275] gi|166011590|ref|ZP_02232488.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. E1979001] gi|166211563|ref|ZP_02237598.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399720|ref|ZP_02305238.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419672|ref|ZP_02311425.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424139|ref|ZP_02315892.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025178|ref|YP_001721683.1| translocation protein TolB [Yersinia pseudotuberculosis YPIII] gi|186894556|ref|YP_001871668.1| translocation protein TolB [Yersinia pseudotuberculosis PB1/+] gi|218928292|ref|YP_002346167.1| translocation protein TolB [Yersinia pestis CO92] gi|229841061|ref|ZP_04461220.1| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843165|ref|ZP_04463311.1| periplasmic protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894002|ref|ZP_04509188.1| periplasmic protein [Yersinia pestis Pestoides A] gi|229903474|ref|ZP_04518587.1| periplasmic protein [Yersinia pestis Nepal516] gi|270487254|ref|ZP_06204328.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis KIM D27] gi|294503129|ref|YP_003567191.1| translocation protein TolB precursor [Yersinia pestis Z176003] gi|32699710|sp|Q8ZGZ1|TOLB_YERPE RecName: Full=Protein tolB; Flags: Precursor gi|67461941|sp|Q66D90|TOLB_YERPS RecName: Full=Protein tolB; Flags: Precursor gi|118574601|sp|Q1CAF2|TOLB_YERPA RecName: Full=Protein tolB; Flags: Precursor gi|118574602|sp|Q1CFM9|TOLB_YERPN RecName: Full=Protein tolB; Flags: Precursor gi|166229995|sp|A4TNS8|TOLB_YERPP RecName: Full=Protein tolB; Flags: Precursor gi|166988087|sp|A7FKQ3|TOLB_YERP3 RecName: Full=Protein tolB; Flags: Precursor gi|226705901|sp|B2K8G1|TOLB_YERPB RecName: Full=Protein tolB; Flags: Precursor gi|226705902|sp|A9R2G2|TOLB_YERPG RecName: Full=Protein tolB; Flags: Precursor gi|226705903|sp|B1JG47|TOLB_YERPY RecName: Full=Protein tolB; Flags: Precursor gi|21959970|gb|AAM86605.1|AE013906_9 periplasmic protein [Yersinia pestis KIM 10] gi|45435724|gb|AAS61282.1| TolB colicin import protein [Yersinia pestis biovar Microtus str. 91001] gi|51588785|emb|CAH20399.1| TolB colicin import protein [Yersinia pseudotuberculosis IP 32953] gi|108776682|gb|ABG19201.1| TolB colicin import protein [Yersinia pestis Nepal516] gi|108778512|gb|ABG12570.1| TolB colicin import protein [Yersinia pestis Antiqua] gi|115346903|emb|CAL19790.1| TolB colicin import protein [Yersinia pestis CO92] gi|145211533|gb|ABP40940.1| TolB colicin import protein [Yersinia pestis Pestoides F] gi|149291250|gb|EDM41325.1| TolB colicin import protein [Yersinia pestis CA88-4125] gi|152960001|gb|ABS47462.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pseudotuberculosis IP 31758] gi|162351177|gb|ABX85125.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis Angola] gi|165913664|gb|EDR32283.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. IP275] gi|165923707|gb|EDR40839.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. F1991016] gi|165989538|gb|EDR41839.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. E1979001] gi|166207334|gb|EDR51814.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962413|gb|EDR58434.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050428|gb|EDR61836.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056988|gb|EDR66751.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751712|gb|ACA69230.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pseudotuberculosis YPIII] gi|186697582|gb|ACC88211.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pseudotuberculosis PB1/+] gi|229679244|gb|EEO75347.1| periplasmic protein [Yersinia pestis Nepal516] gi|229689512|gb|EEO81573.1| periplasmic protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697427|gb|EEO87474.1| periplasmic protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703887|gb|EEO90900.1| periplasmic protein [Yersinia pestis Pestoides A] gi|262361165|gb|ACY57886.1| translocation protein TolB precursor [Yersinia pestis D106004] gi|262365278|gb|ACY61835.1| translocation protein TolB precursor [Yersinia pestis D182038] gi|270335758|gb|EFA46535.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis KIM D27] gi|294353588|gb|ADE63929.1| translocation protein TolB precursor [Yersinia pestis Z176003] gi|320014264|gb|ADV97835.1| periplasmic protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 430 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 101/445 (22%), Positives = 200/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K++ + Sbjct: 1 MKQAFRVALGFLVL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEE 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 54 IGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT+SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVK 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G + L V D DG N +++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 QTLANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V SP G + Sbjct: 289 NNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGVPQRITWEGSQNQNADV-SPDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +G I + ++L + + P+ +P+G +I+S + GS L + Sbjct: 348 LVSSNGGAQHIAKQDLETGAVQVLTDTLLDETPSIAPNGTMVIYSSTQG--LGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|330959271|gb|EGH59531.1| translocation protein TolB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 433 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 109/441 (24%), Positives = 209/441 (47%), Gaps = 13/441 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N+ L ++L G + V + S +P+++ + L ++E+VS Sbjct: 2 INLFRGLLVVLCFASGMVAAEEK-NILVTSGSDRAAPIAVVPFGWQGGSVLPEDMAEIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSESNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQRRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMNLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + V ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|51473498|ref|YP_067255.1| translocation protein TolB [Rickettsia typhi str. Wilmington] gi|67461946|sp|Q68X69|TOLB_RICTY RecName: Full=Protein tolB; Flags: Precursor gi|51459810|gb|AAU03773.1| TolB protein precursor [Rickettsia typhi str. Wilmington] Length = 443 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 164/444 (36%), Positives = 247/444 (55%), Gaps = 20/444 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQR 75 ++ I F + +A + P IA KF + +G V +V+S DL+ Sbjct: 4 IVYFILTLFSLTGYALETINIEHGRVDPTPIAVNKFNADSSNNDLVGNAVVKVISNDLKI 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F IS SF ++ T + P F W + A +LV G V +L++ F LWD Sbjct: 64 SGLFRPISSASFIEEQTGINYKPLFAAWRQINASLLVNGEVQTLESGKLKISFILWDTFL 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 KQ+IG F WR+ AH I+D IY+ ITG+ G F+++I++VSES IK + + Sbjct: 124 EKQLIGALFEVPTKLWRRAAHKIADKIYEKITGDPGYFDTKIVYVSESTALPKIK-RIAL 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD DGAN +YLT + ++ PRF+ + K+ Y +Y + VY D + + +G+ Sbjct: 183 MDYDGANNKYLTNGKS-LVLTPRFAHSADKIFYVSYATKSRALVYEKDLKTGKES-VVGD 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F + APRFS +GK+A++S+ K+ + IY +DL + +LT+ IN S SYSPD + Sbjct: 241 FVGISFAPRFSPDGKKAVMSIAKNGSTHIYEIDLATKQLNKLTDGFGINTSPSYSPDGKK 300 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF---TKFSGEK-F 371 IV+ SD+ G QLY+M S+GSD +RIS SY P WSP+GD IAF T+ GEK F Sbjct: 301 IVYNSDKNGVPQLYIMNSDGSDVRRISFGG-GSYASPSWSPRGDYIAFTKITRHDGEKIF 359 Query: 372 AIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSIDL 423 IG+MK + ER++ +++P WSP+GR ++FS + +K+++IDL Sbjct: 360 NIGIMKAYPQDHENSERIITSGYLVESPCWSPNGRVIMFSKGWPSRAKAPGKNKIFTIDL 419 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 G NE + TPA ASDP+W ++ Sbjct: 420 TGHNEREVITPAGASDPEWSDVLN 443 >gi|237800226|ref|ZP_04588687.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806414|ref|ZP_04593118.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023083|gb|EGI03140.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027527|gb|EGI07582.1| translocation protein TolB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 433 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 106/434 (24%), Positives = 207/434 (47%), Gaps = 12/434 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L+++ + + V + S +P+++ + L ++E+VS DL+ S Sbjct: 8 LLVVLCFASGIVAAEEKNILVTSGSDRAAPIAVVPFGWQGGSVLPEDMAEIVSNDLRNSG 67 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 + I + + T + F+DW +LGAQ ++ G + G RL++++ L++V + Sbjct: 68 YYAPIPKQNMISLPTQGSEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYALFNVATEQ 125 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVM 196 Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S + +L Sbjct: 126 QVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTRYTLQRS 185 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R ++I NF Sbjct: 186 DYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR-REQITNF 242 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP +S +G + + KD +IY ++L S R+TN I+ + D S + Sbjct: 243 EGLNGAPAWSPDGNKLAFVLSKDGNPEIYVINLASRQLSRVTNDGAIDTEPFFGKDGSTL 302 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIG 374 F SDR GK Q+Y NG +R++ + +P S + F + Sbjct: 303 YFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDGFTNFKVA 361 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 V ++L + + ++PT +P+G +I++ ++ G L + +NGR + T Sbjct: 362 VQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRVRLPLPTA 419 Query: 435 -AYASDPQWVGFMD 447 +P W +++ Sbjct: 420 QGEVREPSWSPYLN 433 >gi|104783067|ref|YP_609565.1| translocation protein TolB [Pseudomonas entomophila L48] gi|122402282|sp|Q1I6F4|TOLB_PSEE4 RecName: Full=Protein tolB; Flags: Precursor gi|95112054|emb|CAK16781.1| TolB protein precursor [Pseudomonas entomophila L48] Length = 433 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 112/441 (25%), Positives = 203/441 (46%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M L LLVL+ ++ + S + IA F L +++++S Sbjct: 1 MIKRLRGLLVLLCCVAGMAMAEEKNILVTSGSDRATPIAVVPFGVQGGSVLPEDMADIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G ++ G RL+V + L Sbjct: 61 NDLRNSGYYGPIPRQNMISLPTQASEVI-FRDWKALGAQYVMVGSIVPSG-GRLQVSYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGII 189 ++V +Q++ R +AH I+D ++ +TG KG F++R+L+V+ + Sbjct: 119 FNVATEQQVLTGSVAGGVDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFIQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + KD DIY +++ S R+T IN + Sbjct: 236 REQITNFEGLNGAPAWSPDGTRLAFVLSKDGNPDIYVMNVASRQITRVTAGPGINTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D + + F SDR GK Q+Y G +R++ + +P S + Sbjct: 296 GKDGNTLYFTSDRGGKPQIYKQSVGGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQQG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L E S ++PT +P+G LI++ ++ G L + LNGR Sbjct: 355 FTNFKVAAQDLQRGSVKILTETSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSLNGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|294637421|ref|ZP_06715712.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella tarda ATCC 23685] gi|291089414|gb|EFE21975.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella tarda ATCC 23685] Length = 430 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 99/432 (22%), Positives = 196/432 (45%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L+V + + + +HA V++ + P+ + K++ + +++ DL+ S Sbjct: 7 LMVGLLVLWASVLHAEVRIVITQGVDSARPIGVVPFKWMGPGAAPENIGGIIAADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ + W +LG +V G+V V ++L D Sbjct: 67 KFNPIDASRMPQQPATAAEV-TPAAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTSGNP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ + R AHT SD++++ +TG KG F +RI +V ++ G L V Sbjct: 126 GSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N +++ + L P +S + K+AY T++ ++ T + A +++ + Sbjct: 185 ADYDGYN-QFVVHRSAEPLMSPAWSSDGSKLAYVTFESGR--SALVIQTLSNGAIRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F +P FS +G + ++ K ++++Y +DL S A ++T+ N S+ PDS Sbjct: 242 FPRHNGSPAFSPDGTKLAFALSKTGSLNLYVMDLASGAIRQVTDGRSNNTEPSWFPDSQN 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F SD+ G+ Q+Y + NG +R++ + + V SP G + + I Sbjct: 302 LAFTSDQAGRPQIYKININGGAAQRLTWEGAQNQDAEV-SPDGKFLVMVSSNAGAQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + + ++L + + P+ +P+G +I+S + GS L + ++GR + L T Sbjct: 361 LDLGTNATQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGSVLQLVSIDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|123443146|ref|YP_001007120.1| translocation protein TolB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160929|ref|YP_004297506.1| translocation protein TolB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166229994|sp|A1JRK8|TOLB_YERE8 RecName: Full=Protein tolB; Flags: Precursor gi|122090107|emb|CAL12970.1| TolB colicin import protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604836|emb|CBY26334.1| tolb protein precursor, periplasmic protein involved in the TonB-independent uptake of group A colicins [Yersinia enterocolitica subsp. palearctica Y11] gi|325665159|gb|ADZ41803.1| translocation protein TolB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864065|emb|CBX74142.1| protein tolB [Yersinia enterocolitica W22703] Length = 430 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 198/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K++ + Sbjct: 1 MKQAFRVALGFLVL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEE 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 54 IGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSY 112 Query: 125 RVEFRLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G + L V D DG N +++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 QTLANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V SP G + Sbjct: 289 NNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-SPDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +G I ++L + + P+ +P+G +I+S + G+ L + Sbjct: 348 LVSSNGGAQHIAKQDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGAVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|299067719|emb|CBJ38928.1| protein tolB, component of the tol-pal system [Ralstonia solanacearum CMR15] Length = 435 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 122/450 (27%), Positives = 200/450 (44%), Gaps = 22/450 (4%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M +R F L + LL+VL G A + V A S IA F + Sbjct: 3 MMMRNFWKSGLRRSAWIGLLMVLCAGV----ARAQLYVEIAGAGSSQYPIAIANFQGESQ 58 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 + ++ +V DL S F+ + + P W S GA V G V + G Sbjct: 59 IPQDITAIVRADLVHSGRFSNVDVAGA---VVPDSPAPDLGAWKSRGAAAFVGGTVTRNG 115 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 DR + FRL+D + + G R AH I+D IYQ + G++G F +R+ +V Sbjct: 116 -DRYEIRFRLYDTAKGESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSYV 174 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S+ + L + D DGAN + S + I+ P +SP+ KVAY +++ + VY Sbjct: 175 SKVG----RRYQLQISDSDGANPQVALTSNEPII-SPSWSPDGTKVAYVSFESRKPV-VY 228 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D R I N + AP +S +G+R +++ +D IY V+ + RLT + Sbjct: 229 VHDLITGR-RAVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTRS 287 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQ 357 I+ S+SPD I F SDR G Q+Y M G +R++ + P SP Sbjct: 288 SAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPVEGEDAGSAQRVTFKGGYN-TSPRVSPD 346 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G L+A+ G F + V L + S ++P+++ +G+ ++++ + G S Sbjct: 347 GKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTSYDESPSFAANGKFILYATRVGGR--SV 404 Query: 418 LYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 L ++ +GR +++ +P W FM Sbjct: 405 LAAVSTDGRTRQILSLQAGTVREPAWGPFM 434 >gi|325274582|ref|ZP_08140639.1| translocation protein TolB [Pseudomonas sp. TJI-51] gi|324100284|gb|EGB98073.1| translocation protein TolB [Pseudomonas sp. TJI-51] Length = 433 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 208/441 (47%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M L LLVL+ ++ + S + IA F L +++++ Sbjct: 1 MIKRLRGLLVLLCCVAGLAVAEEKNILVTSGSDRATPIAVVPFGMQGGSVLPEDIADIIG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S ++ I + + + + + F+DW +LGAQ ++ G ++ G RL+V++ L Sbjct: 61 NDLRNSGYYSPIPRQNMISQPSQASEVI-FRDWKALGAQYVMVGSIVPSG-GRLQVQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGII 189 ++V +Q++ S R +AH I+D ++ +TG KG F++R+L+V+ + Sbjct: 119 FNVATEQQVLTGSVAGSTDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ + R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQNIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ NF + AP +S +G R + KD DIY +++ S R+T IN + Sbjct: 236 REQVTNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNMASRQISRVTAGPGINTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D + I F SDR GK Q+Y +G +R++ + +P S + Sbjct: 296 GKDGNTIYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQQG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L E S ++PT +P+G LI++ ++ G L + LNGR Sbjct: 355 FTNFKVAAQDLQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSLNGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|84388529|ref|ZP_00991076.1| translocation protein TolB precursor [Vibrio splendidus 12B01] gi|84377078|gb|EAP93949.1| translocation protein TolB precursor [Vibrio splendidus 12B01] Length = 450 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 109/458 (23%), Positives = 201/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L V + HA +++ + P++I ++ + L VS V++ Sbjct: 1 MLKKLLLSFVFLIATSSQFAHAALELVITDGINSARPIAIVPFRWEGAEPLPHDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ ++ Q + + F W +LG L+TG + K + + V ++L Sbjct: 61 SDLQRSGKFSPVATSKMPQTPYSESEV-DFDAWTNLGVDSLLTGSITKNTEGQYVVNYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + KK R+ AH ISD +Y+ +TGE Sbjct: 120 IDIVRGQLTKGQSRALSDEGQLVLSKDHVLFNKKATVPGKRLREYAHRISDLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 KG F +RI +V + L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 180 KGAFLTRISYVVVN-DKDKYPYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ +++ ++ APRFS +GK + + K ++ +Y++DL Sbjct: 238 SFQNGQA-EIFIMNIYTGD-REKVTSYPRHNGAPRFSPDGKTLALVLSKTGSLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 S ++T N + PD ++F SDR GK Q+Y + + + RI+ + Sbjct: 296 ASRKLTQITRGRSNNTEPFWYPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KTNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|260779148|ref|ZP_05888040.1| TolB protein precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260605312|gb|EEX31607.1| TolB protein precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 450 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 103/458 (22%), Positives = 200/458 (43%), Gaps = 30/458 (6%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + ++ L LL ++ F + + + + P++I K+ +L VS V++ Sbjct: 1 MLKRLVLGCLLTVMSAFQVANAALELVITDGIDSARPIAIVPFKWEGSTKLPHNVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ ++ Q + I F W LG L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVATSKMPQTPYSESEI-NFDAWTGLGVDALLTGTISQNAEGNYVINYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + + K+ R+ AH ISD +Y+ +TGE Sbjct: 120 VDVVRGQLTQGQSKALSTDGQLVLSKDHVLFNKRATVPGERMREYAHRISDLVYKELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 180 RGAFLTRIAYVVVN-DKDSYPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ +++ ++ APRFS +G + + + K ++ +Y++DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKVTSYPRHNGAPRFSPDGNKLALVLSKTGSLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 KTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLASGSTNRLTWQGRQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFLVMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 --FNKTNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|30248242|ref|NP_840312.1| translocation protein TolB [Nitrosomonas europaea ATCC 19718] gi|32699691|sp|Q82XN9|TOLB_NITEU RecName: Full=Protein tolB; Flags: Precursor gi|30180127|emb|CAD84129.1| probable tolB-related transport protein [Nitrosomonas europaea ATCC 19718] Length = 425 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 110/435 (25%), Positives = 201/435 (46%), Gaps = 14/435 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ L VL+ + TS A + + + + IA F L +S +VS D Sbjct: 1 MRNFLYCTGVLLLLWMSTSSQAALNIEIFGGGTNKIPIAIAPFNGERGLPQSISAIVSAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+R+ +F L+ + R+ DW GA LV G + R+ V FRL D Sbjct: 61 LERTGLFKLVDTLGL---TSQEPEQIRYIDWQGRGASALVVGSISPLPDGRIDVRFRLLD 117 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + Q+ G + R AH I+D +Y+++TGE G F++RI FV + + + Sbjct: 118 VVKQTQLTGFSGAVTTEQLRAFAHRIADIVYETLTGEPGAFSTRIAFVRKQGS----QYA 173 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG N R L + I+ P +SP+ ++AY +++ + V + T R K Sbjct: 174 LQVSDYDGFNARSLIEYTEPII-SPAWSPDGSRIAYTSFEKKKP--VVYVQTLATRERKA 230 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + NF+ AP +S +G + + + IY ++ + +R++ + I+ S+SPD Sbjct: 231 VANFKGSNSAPAWSPDGSKLAVVLTLHGGSQIYLINADGSGLQRISQSPGIDTEPSFSPD 290 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++F SDR G Q+Y M +G +R++ + + + P +SP G + + +F Sbjct: 291 GRWLMFTSDRGGSPQIYRMPVSGGVAERMTFEGDYNV-SPHYSPDGKRFVYIHRNAGRFN 349 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLI 431 + + Q +LL + + ++P++SP+ R ++++ + G L ++ +G L Sbjct: 350 VAIQDLSTRQMQLLTDSNFDESPSFSPNNRMILYTTEIGGRGI--LSTVSSDGQAKSRLS 407 Query: 432 NTPAYASDPQWVGFM 446 + W + Sbjct: 408 QEAGNIREAVWGPLL 422 >gi|183598188|ref|ZP_02959681.1| hypothetical protein PROSTU_01566 [Providencia stuartii ATCC 25827] gi|188020354|gb|EDU58394.1| hypothetical protein PROSTU_01566 [Providencia stuartii ATCC 25827] Length = 430 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 97/432 (22%), Positives = 190/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +++ + T A +++ + P+ + K+ ++ ++V DL+ S Sbjct: 7 VVLGFLMLWATVAQAEIRIEITEGVNSAQPIGVVPFKWSGSGTPPQEIGQIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ + + W +LG +V G++ V ++L DV Sbjct: 67 KFNPIEPSRMPQQPATASEVV-PEAWTALGINAVVVGQIQPAADGSYVVSYQLVDVAGSP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ + R AHT SD++++ +TG +G F +RI +V + G L V Sbjct: 126 GTVLSQNQYKVTKEWLRYAAHTASDEVFEKLTGIRGAFRTRIAYVV-TNKGGQYPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ + L P +SP+ +++AY T++ ++ T A +++ + Sbjct: 185 SDYDGYN-QFTVHRSPEPLMSPTWSPDGERLAYVTFESGS--SALVIQTLSTGAVRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ PDS Sbjct: 242 FPRHNGAPAFSPDGTKLAFALSKTGSLNLYIMDLASGQIRQVTDGRSNNTEPSWMPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V+ SD+ G+ Q+Y + NG +R++ + + D SP G I G + I Sbjct: 302 LVYTSDQAGRPQIYKININGGSPERVTWEGTQNQ-DADVSPDGSFIVMVSSGGGQQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 L + + P+ +P+G +I+S + T +L + +GR + L T Sbjct: 361 QDLATGNVEYLTKTFLDETPSIAPNGTMVIYSSSQGLGTILQL--VSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|261211900|ref|ZP_05926187.1| TolB protein precursor [Vibrio sp. RC341] gi|260839250|gb|EEX65882.1| TolB protein precursor [Vibrio sp. RC341] Length = 450 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 108/458 (23%), Positives = 203/458 (44%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L +L+LIG + +A +++ + P++I K+ +L +S V++ Sbjct: 1 MFKRLVFILMLIGTSMTSVANAALELVITDGIDSARPIAIIPFKWEGGTKLPEDISGVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + + F W SLG L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSLGVDSLLTGTITQNAEGSYVISYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + K + R+ AH I+D +Y+ +TGE Sbjct: 120 VDIVRGQLTQGQSKALSSDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ Q L P +SP+ Q +AY Sbjct: 180 RGAFLTRIAYVVVN-DKDPYPYQLRISDYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +Y+M+ + K + +F APRFS +GK + + K + +Y++DL Sbjct: 238 SFQNGQA-EIYMMNIYSGQRDK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + +T+ N + PD ++F SDR GK Q+Y + + KRI+ + Sbjct: 296 ATRRLKEVTDGRANNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSDGATKRITWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|313202059|ref|YP_004040717.1| tol-pal system beta propeller repeat-containing protein tolb [Methylovorus sp. MP688] gi|312441375|gb|ADQ85481.1| Tol-Pal system beta propeller repeat protein TolB [Methylovorus sp. MP688] Length = 412 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 111/418 (26%), Positives = 202/418 (48%), Gaps = 12/418 (2%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 P + A + + + IA F ++ VV DL+RS +F ++ Sbjct: 3 LPLAGKAALTIEIVGGAAQQIPIAVVPFAKTPGAQDDIATVVGADLRRSGLFRVLETRGV 62 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 + + + ++ +W ++ AQ L G V RL+V FRL DV + Q+ G +F + Sbjct: 63 VNQPHDLPEV-KYPEWAAIQAQALTIGSVETLPGGRLKVSFRLLDVLKQNQLAGLEFNIA 121 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + R AH I+D IY+ +TGE G F++RI +++++ + +L V D DG N + + Sbjct: 122 ASQQRATAHKIADIIYEKLTGEPGVFSTRIAYITKTAG----RYALQVADADGFNPQTVM 177 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S + ++ PR+SP+ K+AY +Y+ + + + + + + NF+ AP +S Sbjct: 178 SSNEPVI-SPRWSPDGTKLAYVSYEKKKP--IVFVQSLVTGQRNVVANFKGNNSAPAWSP 234 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R I + +Y ++ ++LT T I+ ++PD S I F S+R G Q Sbjct: 235 DGNRLAIVLTHSANSQVYVINADGTGLKQLTYTTSIDTEPVWTPDGSAIYFTSNRGGGPQ 294 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y M S G D KR++ D + P SP G +A+ K KF + V Q ++L Sbjct: 295 IYRMASTGGDAKRVTFDGNYNV-SPRISPDGKTLAYIKQDNGKFRVAVQDVASGQVQVLS 353 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 + + ++P+++P+GR ++++ G L ++ +GR + L T +P W Sbjct: 354 DTAQDESPSFAPNGRMILYATSISGRGA--LAAVSADGRVKQRLSETGGDVREPAWGP 409 >gi|160898835|ref|YP_001564417.1| translocation protein TolB [Delftia acidovorans SPH-1] gi|160364419|gb|ABX36032.1| Tol-Pal system beta propeller repeat protein TolB [Delftia acidovorans SPH-1] Length = 441 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 109/427 (25%), Positives = 191/427 (44%), Gaps = 14/427 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 LL + A +V + + IA F + K+S ++ DL+RS F Sbjct: 25 LLAALASTPAIPALAQFRVEVTGVGLTQLPIAIAAFKGEGQAPQKISAIIQADLERSGQF 84 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + + + S P W A L G + + R V FRLWDV + + Sbjct: 85 RAVDTAGVQ---LDETSRPDVAMWRQKSADSLAVGSITRLADGRYDVRFRLWDVVKGQDL 141 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G+ F + R +AH ISD IY+ +TGEKG F++RI +V+++ + L V D D Sbjct: 142 GGQGFAVTTGDLRLVAHRISDYIYEKLTGEKGVFSTRIAYVTKAGSN----YRLWVADAD 197 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + S + I+ P +SP ++AY +++ + VY+ D R + + NFR Sbjct: 198 GENAQSALSSPEPII-SPAWSPTGTQLAYVSFESRKPV-VYVHDVASGR-RRLVANFRGS 254 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G +++ +D +Y + Q RL + I+ ++S D I F Sbjct: 255 NSAPAWSPDGNSLAVTLSRDGGSQLYLISAQGGEPRRLMQSSGIDTEPNFSSDGRSIYFV 314 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G Q+Y + ++G +R++ + P SP G +A+ G F + VM Sbjct: 315 SDRGGAPQIYKVPASGGSAERVTFTGNYN-ISPSVSPDGKWLAYVSRVGGGFKLHVMDLG 373 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 + + + ++P+++P+ R ++++ + G L + L+G+ L Sbjct: 374 TGTVNAITDTTADESPSFAPNSRLIVYATLQQGR--ESLMTTTLDGKIKARLAGQGGDIR 431 Query: 439 DPQWVGF 445 +P W F Sbjct: 432 EPDWGPF 438 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 8/140 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I FVS+ + + + G + +T + + P SP+ + +AY + Sbjct: 310 SIYFVSDRGGAP----QIYKVPASGGSAERVTFTGN-YNISPSVSPDGKWLAYVS-RVGG 363 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++++MD + +P F+ N + + + + + + L Sbjct: 364 GFKLHVMDLGTGTVNAI--TDTTADESPSFAPNSRLIVYATLQQGRESLMTTTLDGKIKA 421 Query: 296 RLTNTLFINISASYSPDSSQ 315 RL + P Q Sbjct: 422 RLAGQGGDIREPDWGPFQRQ 441 >gi|26987957|ref|NP_743382.1| translocation protein TolB [Pseudomonas putida KT2440] gi|60415976|sp|P0A173|TOLB_PSEPK RecName: Full=Protein tolB; Flags: Precursor gi|60415977|sp|P0A174|TOLB_PSEPU RecName: Full=Protein tolB; Flags: Precursor gi|24982670|gb|AAN66846.1|AE016313_5 tolB protein [Pseudomonas putida KT2440] gi|5514779|emb|CAB50781.1| TolB protein [Pseudomonas putida] Length = 433 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 109/441 (24%), Positives = 208/441 (47%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M L LLV++ ++ + S + IA F L +++++ Sbjct: 1 MIKRLRGLLVMLCCVAGMAVAEEKNILVTSGSDRATPIAVVPFGLQGGSVLPEDIADIIG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S ++ I + + + + + F+DW +LGAQ ++ G ++ G RL+V++ L Sbjct: 61 NDLRNSGYYSPIPRQNMISQPSQASEVI-FRDWKALGAQYVMVGSIVPSG-GRLQVQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGII 189 ++V +Q++ S R +AH I+D ++ +TG KG F++R+L+V+ + Sbjct: 119 FNVATEQQVLTGSVAGSTDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ + R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQNIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ NF + AP +S +G R + KD DIY +++ S R+T IN + Sbjct: 236 REQVTNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D + + F SDR GK Q+Y +G +R++ + +P S + Sbjct: 296 GKDGNTLYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQQG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L E S ++PT +P+G LI++ ++ G L + LNGR Sbjct: 355 FTNFKVAAQDLQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSLNGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|300310549|ref|YP_003774641.1| periplasmic component of the Tol biopolymer transport system protein [Herbaspirillum seropedicae SmR1] gi|300073334|gb|ADJ62733.1| periplasmic component of the Tol biopolymer transport system protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 119/423 (28%), Positives = 196/423 (46%), Gaps = 15/423 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 G F + A ++ S + IA T F + +++ VV DL RS VF LI Sbjct: 19 GLSFAPASQAQIRFEITGVGASQIPIAITAFPGEESAPQQITSVVKADLARSGVFKLIDN 78 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 S + DW GA L G V + R V +RL+D Q+ Sbjct: 79 GDALSD----SSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSI 134 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + P R AH I+DDIYQ +TG G F++RI +V++S + L V D DG + Sbjct: 135 GAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGG----EYRLEVADADGEGTQ 190 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 S + I+ P +SP+ KVAY +++ + V + + R + NF+ AP Sbjct: 191 VALRSNEPII-SPSWSPDGTKVAYVSFEMKKP--VVYIQNLVTRQRSIVANFKGSNSAPA 247 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G R +++ +D +Y ++ + RLTN+ I+ +SPD I F SDR G Sbjct: 248 WSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSG 307 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 Q+Y + +G +R++ + + P SP G +AF +F + + QE Sbjct: 308 GPQVYKVGLDGGSPQRVTFNGSYN-ISPRISPDGKTLAFISRRDGQFQLYALDLTNGQEI 366 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWV 443 L + S Q+P+++P+G+ ++++ + G GS L + ++GR + L +P W Sbjct: 367 RLSDGSRDQSPSFAPNGKYIMYATE-AGRRGS-LAVVSVDGRIKQRLTTQAGDIREPTWG 424 Query: 444 GFM 446 FM Sbjct: 425 PFM 427 >gi|285019183|ref|YP_003376894.1| biopolymer ABC transporter periplasmic protein [Xanthomonas albilineans GPE PC73] gi|283474401|emb|CBA16902.1| probable biopolymer transport protein, periplasmic component [Xanthomonas albilineans] Length = 439 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 216/442 (48%), Gaps = 16/442 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF---VKVATNSANY--SPVSIAFTKFVSIDELGG-KVS 66 MK VLI P + A +++ N +P+++ + V+ Sbjct: 1 MKKLPRWFAVLIALLLPLTASAQDKGLEIDIVGGNASATPIAVVPMPYQGSAAAPSTDVA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F + + ++ T + ++ W +L LV GRV+ G+ RV Sbjct: 61 AVVRADLDRSGQFRDLPEAQMVERPTRGSDV-QYATWRALKQDYLVVGRVLDAGEGAYRV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E+ L+DV ++I+G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 120 EYELFDVAKGERILGLAMTARANAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKD 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + +Y+ D Sbjct: 180 GAMRYALMVADSDGYNPQTIVRSAEP-LLSPSWSPDGKKLAYVSFEHGNS-SIYIQDIAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ Sbjct: 238 G-ARQLVSSFRGINGAPSFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNNFGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD + I F SDR G+ Q+Y + + G RI+ + V S G IA + Sbjct: 297 PTWAPDGNSIYFTSDRGGRPQIYQVPATGGSATRITFQGNYNATASV-SYDGKKIAVAQG 355 Query: 367 SGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + I +M + R L S ++P+++P+ ++++ ++ G LY++ + Sbjct: 356 SGNSYKIAMMDRSLGAPRWSTLSTGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSAD 413 Query: 425 GR-NETLINTPAYASDPQWVGF 445 R + L+ +P W + Sbjct: 414 ARVRQRLVLADGDVREPSWSPY 435 >gi|218462393|ref|ZP_03502484.1| translocation protein TolB [Rhizobium etli Kim 5] Length = 360 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 178/364 (48%), Positives = 250/364 (68%), Gaps = 4/364 (1%) Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK 143 + +F +K D+ PRF+DW + AQ LVTGRV KE RLR EFRLWD +Q+ G++ Sbjct: 1 KSAFIEKDLQSDASPRFEDWKVINAQALVTGRVTKEADGRLRAEFRLWDPFAGQQMTGQQ 60 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 FF+ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K L +MD+DG N+ Sbjct: 61 FFTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQLAIMDQDGFNV 120 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 R LT D ++ PRFSP++Q+V Y ++ ++ RVYL+ + + +GNF M +P Sbjct: 121 RMLTDGSD-LVLTPRFSPSRQEVTYMSFANQQP-RVYLLQLETGQ-REVVGNFPGMTFSP 177 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 RFS +G++ ++S+Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ FESDR Sbjct: 178 RFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAAIDTSPSYSPDGARVSFESDRG 237 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 GK Q+YVM ++GS Q RIS + SY PVWSP+GDLIAFTK SG KF+IGVMK DGS E Sbjct: 238 GKPQIYVMNADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQSGGKFSIGVMKPDGSGE 296 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 R+L + + PTW+P+GR L+F R+ G G +LYSIDL G NE L+ TP Y SDP W Sbjct: 297 RILTTGFHNEGPTWAPNGRVLMFFRQAAGSGGPQLYSIDLTGYNEQLVKTPTYGSDPAWS 356 Query: 444 GFMD 447 ++ Sbjct: 357 PLLE 360 >gi|315126276|ref|YP_004068279.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas sp. SM9913] gi|315014790|gb|ADT68128.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas sp. SM9913] Length = 452 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 209/458 (45%), Gaps = 35/458 (7%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 KI + L++++G F HA +++ P++I K+ I + ++S+V++ Sbjct: 4 KIKIACLVLILG--FQGVAHAALEIVITEGIDGARPIAIVPFKYQGIGPIPEQLSDVIAA 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F +S Q+ + D + W + G + ++ G V ++ R V + L Sbjct: 62 DLMRSGKFKPVSVSQMPQQP-HKDGDIDYGAWVNKGVEAVLVGEVEQQTNGRYLVRYELV 120 Query: 132 DVKDRK--------------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 DV + + ++ +R+ +H ISD IY+ +TGEKG Sbjct: 121 DVIRGQITGGETQMMSNGKLVQSQDHILEARQSVIGETGFRRYSHRISDVIYEKLTGEKG 180 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F ++I +V + L V D DG N + L S++ L P +SP+ K+AY T+ Sbjct: 181 AFLTKIAYVIVR-DTEEKPYQLVVADYDGFNEQVLLRSKEP-LMSPVWSPDGTKLAYVTF 238 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDL 289 ++ ++Y+ D + + I +++ + AP+FS +GK+ L+ + KD A ++Y +DL Sbjct: 239 ENRQS-QIYIQDIYTGK-RELITSYKGINGAPQFSPDGKKLLLVLSKDKTGATEVYLLDL 296 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + RLT I+ S+ P+ IVF S+R G Q+Y + +R++ D + + Sbjct: 297 LTRKETRLTRHRSIDTEPSWYPNGEDIVFTSERGGNAQIYKLNLKTGRTQRLTFDGDMNL 356 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 SP G + + ++ + + ++L ++P+ +P+G +I+S Sbjct: 357 -AGSISPDGKELVMVNRTNGQYHLAKKELATGAFQVLTRTRLDESPSIAPNGSMIIYSTL 415 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L S+D GR + L P W ++ Sbjct: 416 HNNKQVLALVSMD--GRFKARLPVLDGQVKAPAWSPYL 451 >gi|238790498|ref|ZP_04634267.1| hypothetical protein yfred0001_12280 [Yersinia frederiksenii ATCC 33641] gi|238721442|gb|EEQ13113.1| hypothetical protein yfred0001_12280 [Yersinia frederiksenii ATCC 33641] Length = 430 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 101/445 (22%), Positives = 199/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K++ + Sbjct: 1 MKQAFRVALGFLVL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEE 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 54 IGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSY 112 Query: 125 RVEFRLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G + L V D DG N +++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 QTLANGAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSGQISQVTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V SP G +A Sbjct: 289 NNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV-SPDGKFLA 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +G I ++L + + P+ +P+G +I+S + G+ L + Sbjct: 348 LVSSNGGAQHIAKQDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--LGAVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|32699701|sp|Q8DAM3|TOLB_VIBVU RecName: Full=Protein tolB; Flags: Precursor Length = 443 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 30/449 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNS-ANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 LLVL+ + A + T+ + P++I K+ L +S VV+ DLQRS Sbjct: 3 LLVLLSSVTNVANAALELIITDGIDSARPIAIVPFKWQGTKALPVDISSVVASDLQRSGK 62 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F+ + Q N I F W +LG L+TG V + K + ++L DV + Sbjct: 63 FSPVPTSKMPQTPYNESEI-NFDAWTNLGVDTLLTGSVTQNEKGEYVINYQLVDVVRGQL 121 Query: 139 --------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 + K + R+ AH ISD IY+ +TGE+G F +RI Sbjct: 122 TSGQSRALEDGQLVLSKDHVLFNKVATITAPRMREYAHRISDLIYEQLTGERGAFLTRIA 181 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V + L V D DG N R + S+ Q L P +SP+ +++AY ++ + Sbjct: 182 YVVVN-DKDKFPYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGRRLAYVSFQNGQA-E 238 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +++++ +++ +F APRFS +GK+ I + K ++ IY++DLQ+ ++T Sbjct: 239 IFVLNIYTGEH-EKLTSFPRHNGAPRFSPDGKKLAIVLSKTGSLQIYTLDLQTRQLTQIT 297 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N + PD ++F SDR GK Q+Y + + R++ + +P G Sbjct: 298 RDRSNNTEPFWHPDGKSLIFTSDRGGKPQIYRVNLSDGSTSRLTWQGSQNLGGQ-ITPDG 356 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + S F + + ++L + ++P+ +P+G +I+S D L Sbjct: 357 RFLIMVNRSDSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIYDKKN--VL 414 Query: 419 YSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + ++GR + L T P W F+ Sbjct: 415 SMVSIDGRFKARLPATNGRVRAPAWSPFL 443 >gi|262165948|ref|ZP_06033685.1| TolB protein precursor [Vibrio mimicus VM223] gi|262171199|ref|ZP_06038877.1| TolB protein precursor [Vibrio mimicus MB-451] gi|261892275|gb|EEY38261.1| TolB protein precursor [Vibrio mimicus MB-451] gi|262025664|gb|EEY44332.1| TolB protein precursor [Vibrio mimicus VM223] Length = 450 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 109/458 (23%), Positives = 205/458 (44%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L +L+LIG F +A +++ + P++I K+ +L VS V++ Sbjct: 1 MFKRLIFVLMLIGTGFTNVANAALELVITDGIDSARPIAIIPFKWEGGTKLPEDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + + F W SLG L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSLGVDSLLTGTITQNAEGSYVISYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + K P+ R+ AH I+D +Y+ +TGE Sbjct: 120 VDIVRGQLTQGQSKALSPDGQLVLSKDHVLFNKVATVPPSRMREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ Q L P +SP+ Q +AY Sbjct: 180 RGAFLTRIAYVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ + K + +F APRFS +GK + + K + +Y++DL Sbjct: 238 SFQNGQA-EIFMMNIYTGQRDK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + +T+ N + PD ++F SDR GK Q+Y + + KR++ + Sbjct: 296 ATRRLKEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSDGATKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGKFLVMVNRSDSGFNLAKLDLETGAMQILTKTLLDESPSIAPNGGMVIYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--KANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|329888411|ref|ZP_08267009.1| tol-Pal system beta propeller repeat protein TolB [Brevundimonas diminuta ATCC 11568] gi|328846967|gb|EGF96529.1| tol-Pal system beta propeller repeat protein TolB [Brevundimonas diminuta ATCC 11568] Length = 486 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 163/451 (36%), Positives = 249/451 (55%), Gaps = 18/451 (3%) Query: 8 AEELNMKINLCLLLVLIGGFF-PTSIHAFVK---------VATNSANYSPVSIAFTKFVS 57 LN + +L + S+ A V + P+ IA F Sbjct: 26 PMRLNRLLASAAVLAMTAPLALGGSVQAQSTPAVGAPMQDVVVDEGVLRPLQIAVVPFTG 85 Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 + G ++S V+S +L+RS F+ ++ SF + + P F W S+GAQ ++ G V Sbjct: 86 QN--GSQISGVISGNLKRSGFFDPLNPASFVETGLTLANAPNFPQWTSIGAQAVLYGGVT 143 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 R+ V FRL+D + Q++ +F ++ WR+IAH ISD +YQ +TGE G F+SR+ Sbjct: 144 PRADGRIDVGFRLYDPYRQCQLVSYQFTATSEQWRRIAHKISDVVYQRLTGEAGFFDSRV 203 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP-NQQKVAYATYDDEDI 236 LFVSES + L ++D+DG N +LT D+++ PRFS N +V Y +D Sbjct: 204 LFVSESGTQLNKLSRLTIVDQDGYNPVFLTQG-DEVIMSPRFSASNPDEVTYVALG-KDY 261 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R+YL + R + +G F +LAPRFS++G + S+ + D+Y ++L+S R Sbjct: 262 SRIYLYNLSTGR-RESLGEFDGQVLAPRFSNDGSKMAFSIIRGGNTDVYVMNLRSRQLSR 320 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT I+ S S+SPD +QIVF SDR G +LY M+++GS Q+ IS+ SY P WSP Sbjct: 321 LTTDPGIDTSPSFSPDGNQIVFTSDRSGSARLYTMRADGSGQRPISRGG-GSYTAPAWSP 379 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 +GDL+AFTK G +F IGVMK DG+ ER+L + P+W+P+GR + F+R+ G + Sbjct: 380 RGDLVAFTKQQGGRFHIGVMKSDGTGERILSSSYFEEGPSWAPNGRYIAFARQSPG-GDT 438 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 +L+++DL+GR + SDP W G +D Sbjct: 439 RLWTVDLSGRVVSQAGYDGRGSDPAWSGLLD 469 >gi|91776691|ref|YP_546447.1| TolB-like protein [Methylobacillus flagellatus KT] gi|91710678|gb|ABE50606.1| TolB-like protein [Methylobacillus flagellatus KT] Length = 415 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 114/422 (27%), Positives = 208/422 (49%), Gaps = 15/422 (3%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVVSKDLQRSDVFNLIS 83 + H + V + IA F + G+ ++ V+ DL+RS +F ++ Sbjct: 1 MATGAAHGALTVEIVGGAAQQIPIAVVPFAQQGVIPGQQDTIANVIGADLRRSGLFRVLE 60 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK 143 + ++ + +QDW ++ AQ L G + +RL+V FRL DV + Q++G + Sbjct: 61 TRGVANQPSDISQV-NYQDWAAIQAQALTIGNIETLPGNRLKVSFRLLDVYKQSQLVGME 119 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + +P+ R AH I+D IYQ +TGE+G F +RI +VS+S + +L V D DG N Sbjct: 120 YNITPSQLRLTAHKIADVIYQKLTGEQGVFATRIAYVSKSGG----RYALQVADSDGYNP 175 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + + S + I+ P +SP+ K+AY +++ + + + + + + NF+ AP Sbjct: 176 QTVVSSAEPII-SPVWSPDGTKLAYVSFEKKKP--IIYVQSLVSGQRTVLANFKGNNSAP 232 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +S +GKR I + IYS++ ++LT T I+ ++SPD I F SDR Sbjct: 233 AWSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRTTAIDTEPTWSPDGRYIYFTSDRG 292 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G Q+Y M S+G + R++ + P SP G +A+ + G +F + + Q Sbjct: 293 GSPQIYRMPSSGGEASRMTFEGSY-VVSPRLSPDGKSLAYIRRDGGQFRVALQDLQTGQV 351 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQW 442 ++L + ++P+++P+GR L+ + + G L ++ +GR + L + +P W Sbjct: 352 QVLSDGPKDESPSFAPNGRMLLHATRVGGRGA--LAAVSADGRVKQRLSESGGDVREPAW 409 Query: 443 VG 444 Sbjct: 410 GP 411 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +++I + S G+ L V S+G + + + E PVWSP G +A+ F +K Sbjct: 150 ATRIAYVSKSGGRYALQVADSDGYNPQTVVSSAE-PIISPVWSPDGTKLAYVSFEKKKPI 208 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I V Q +L N AP WSP G+ L S++YSI+ +G + Sbjct: 209 IYVQSLVSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHA--ANSQIYSINADGTGLQQL 266 Query: 432 N-------TPAYASDPQWVGF 445 P ++ D +++ F Sbjct: 267 TRTTAIDTEPTWSPDGRYIYF 287 >gi|241764619|ref|ZP_04762634.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax delafieldii 2AN] gi|241365940|gb|EER60570.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax delafieldii 2AN] Length = 439 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 115/427 (26%), Positives = 199/427 (46%), Gaps = 14/427 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 LL + A +V + + IA F + K++ +V DL+RS F Sbjct: 23 LLAALISTPALPALAQFRVEVTGVGLTQLPIAIAPFRGEAQSPQKIAGIVQADLERSGQF 82 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + + S P W GA L TG V + R V FRLWDV + + Sbjct: 83 RAVDAAG---STLDETSRPDVALWRQKGADSLATGSVTRLADGRFDVRFRLWDVVRGQDL 139 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G+ F + R +AH I+D IY+ +TGE+G F++RI++V++S + SL V D D Sbjct: 140 GGQSFVVTQGDLRLVAHRIADYIYEKLTGERGVFSTRIVYVTKSG----TRYSLWVADAD 195 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + S + I+ P +SPN ++AY +++ + VY+ D R + I NFR Sbjct: 196 GENAQSALSSPEPII-SPAWSPNGGQIAYVSFESRKPV-VYVHDVASGR-RRLIANFRGS 252 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP ++ +G+ +++ +D A +Y++D RL + I+ +S D I F Sbjct: 253 NSAPAWAPDGRTLAVTLSRDGASQLYTIDANGGEPRRLMQSAGIDTEPVFSGDGRSIYFV 312 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G Q+Y + ++G + +R++ + P SP G +A+ G F + VM Sbjct: 313 SDRGGAPQIYKVPASGGNAERVTFSGTYN-ISPSISPDGRWLAYISRIGGAFKLHVMDLS 371 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 + + S+ + P+++P+ R ++++ ++ G L + L+G+ L Sbjct: 372 SGAVSAITDTSSDENPSFAPNSRLIVYATQQQGR--EALMTTTLDGKIKARLAGQGGDIR 429 Query: 439 DPQWVGF 445 +P W F Sbjct: 430 EPDWGPF 436 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 9/146 (6%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 GD S I FVS+ + + + G N +T S P SP+ + +AY Sbjct: 303 SGDGRS-IYFVSDRGGAP----QIYKVPASGGNAERVTFSG-TYNISPSISPDGRWLAYI 356 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + ++++MD S P F+ N + + + Q+ + + L Sbjct: 357 S-RIGGAFKLHVMDLSSGAVSAI--TDTSSDENPSFAPNSRLIVYATQQQGREALMTTTL 413 Query: 290 QSNATERLTNTLFINISASYSPDSSQ 315 RL + P Q Sbjct: 414 DGKIKARLAGQGGDIREPDWGPFQKQ 439 >gi|254506038|ref|ZP_05118182.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus 16] gi|219550856|gb|EED27837.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus 16] Length = 433 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 104/439 (23%), Positives = 194/439 (44%), Gaps = 31/439 (7%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 HA +++ + P++I K+ +L VS VV+ DLQRS F+ I+ + Q Sbjct: 2 AHAALELVITDGIDSARPIAIVPFKWEGASKLPQDVSAVVASDLQRSGKFSPIATNRMPQ 61 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK------------ 137 + + F W LG L+TG + + + + ++L DV + Sbjct: 62 TPYSEAEV-NFDAWTGLGVDSLLTGTITQNAEGNYVINYQLVDVVRGQLTQGQSKALSPD 120 Query: 138 ---------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 + K+ R+ AH ISD +YQ +TGE+G F +RI +V + Sbjct: 121 GQLVLSKDHVLFNKQATVPGDRLREYAHRISDLVYQELTGERGAFLTRIAYVVVNDKDQK 180 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N R + S+ Q L P +SP+ +K+AY ++ + +Y+M+ Sbjct: 181 FPYQLRVSDYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIYIMNIYTG- 237 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +++ ++ APRFS +G + + K ++ +Y++DL++ ++T N Sbjct: 238 EREKVTSYPRHNGAPRFSPDGNSLALVLSKTGSLQVYTLDLKTRKLTQITRGRSNNTEPY 297 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PD ++F SDR G+ Q+Y + G R++ + +P G + S Sbjct: 298 WHPDGKSLIFTSDRGGRPQIYQVDLAGGSPNRLTWQGTQNLGGQ-ITPDGRFLVMVNRSN 356 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + + ++L + ++P+ +P+G +I+S + + L + ++GR + Sbjct: 357 AGFNLAKQDLETGAVQILTQTLLDESPSIAPNGGMVIYSSIYN--KANVLSMVSIDGRFK 414 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W F+ Sbjct: 415 ARLPATNGRVRAPAWSPFL 433 >gi|77360809|ref|YP_340384.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas haloplanktis TAC125] gi|119371051|sp|Q3IJ16|TOLB_PSEHT RecName: Full=Protein tolB; Flags: Precursor gi|76875720|emb|CAI86941.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Pseudoalteromonas haloplanktis TAC125] Length = 452 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 111/458 (24%), Positives = 207/458 (45%), Gaps = 35/458 (7%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 K+ + L++L+G F +A +++ P++I K+ I + K+SEV++ Sbjct: 4 KVKVACLILLLG--FQGVANAALEIVITEGIDGARPIAIVPFKYQGIGPIPQKISEVIAA 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + Q+ + DS + W + G + ++ G V ++ R V + L Sbjct: 62 DLMRSGKFKPVDVAQMPQQPSK-DSDINYASWVNKGVEAILVGEVEQQSNGRYLVRYELV 120 Query: 132 DVKDRKQIIGKKFFSSPASW--------------------RKIAHTISDDIYQSITGEKG 171 DV + G+ + R+ +H ISD IY+ +TGEKG Sbjct: 121 DVIRGQITGGQTQMMTNGKLIKNQDHILEARESIISDTGFRRYSHRISDVIYEKLTGEKG 180 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F ++I +V + L V D DG N + L S++ L P +SP+ K+AY T+ Sbjct: 181 AFLTKIAYVIVR-DNDDRPYQLVVSDYDGFNEQVLLRSKEP-LMSPAWSPDGTKLAYVTF 238 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDL 289 ++ ++Y+ D + + + ++ + AP+FS +GK+ L+ + KD A ++Y +DL Sbjct: 239 ENRQS-QIYIQDLYSGK-RELVTSYPGINGAPQFSPDGKKLLLVLSKDKTGATEVYLLDL 296 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + RLT I+ S+ P+ IVF S+R G Q+Y + +R+S D + + Sbjct: 297 VTRKETRLTRHRSIDTEPSWHPNGQDIVFTSERGGNAQIYKLNLKTGRTQRLSFDGDMNL 356 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + + ++ + + ++L ++P+ +P+G +I+S Sbjct: 357 -AGSITPDGKELVMVNRTNGQYHLAKKELATGAFQVLTRTRLDESPSIAPNGSMIIYSTL 415 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L S+D GR + L P W ++ Sbjct: 416 HNNKQVLALVSMD--GRFKARLPVLDGQVKAPAWSPYL 451 >gi|127512456|ref|YP_001093653.1| TolB domain-containing protein [Shewanella loihica PV-4] gi|166988083|sp|A3QD46|TOLB_SHELP RecName: Full=Protein tolB; Flags: Precursor gi|126637751|gb|ABO23394.1| TolB, N-terminal domain protein [Shewanella loihica PV-4] Length = 441 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 108/446 (24%), Positives = 203/446 (45%), Gaps = 22/446 (4%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 NL L+L F A + + P+++ + + ++S+VV DL Sbjct: 3 NLGRWLILGLAFLTIPAKAALDIVITEGVDAARPIAVVPFVWQGSTPMPQQISDVVMSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + + Q+ + + W+++ A+ +V G V G D+ V F L D+ Sbjct: 63 TRSGTFKPMDELGLPQRNLGSLAQMDLKAWSNVAAEAVVMGTVKPYGPDQYLVNFELIDL 122 Query: 134 KDRKQ------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 + + ++ S A +R+ H ISD +Y+ +TG +G F +RI +V Sbjct: 123 VKAQMQSGGPQSASEYLLDSRETVISSAQFRQYGHRISDIVYEKLTGIRGAFLTRIAYVV 182 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 L + D DG N + L S + L P +SP+ +++AY +++++ V++ Sbjct: 183 VD-HKAKSPYKLMIADYDGYNEQMLLRSPEP-LMSPAWSPDGRRLAYVSFENKQA-EVFV 239 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D + K + +F + AP FS +GK+ +++ KD +IY D+ + A +R+TN Sbjct: 240 QDIYTQQRTK-VTSFPGINGAPTFSPDGKKLALTLSKDGQPEIYVADIATKAIKRVTNHY 298 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ AS++PD ++F S+R G+ Q+Y + R++ + E + SP G + Sbjct: 299 AIDTEASWTPDGKSLIFTSERGGRPQIYQVALASGKVTRLTFEGEWNLGG-SISPDGRSM 357 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F + KF I M + ++L ++P+ +P+G +I+ G L ++ Sbjct: 358 VFVNRTNGKFNIARMDLETRFMQVLTTTRLDESPSIAPNGTMVIYGTTYQGQQ--VLAAV 415 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 ++GR + L P W F+ Sbjct: 416 SMDGRFKARLPVGQGEVKSPAWSPFL 441 >gi|332305764|ref|YP_004433615.1| Tol-Pal system beta propeller repeat protein TolB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173093|gb|AEE22347.1| Tol-Pal system beta propeller repeat protein TolB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 451 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 208/457 (45%), Gaps = 31/457 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 I + +L + S A +++ + P+++ K+ ++ +SEV+S Sbjct: 1 MIRITRILTFLSLMLSASSQASLEIVITEGIDSARPIAVVPFKWNGPGQMPEALSEVISG 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F+ I S + DS ++ W + G + ++ G V EG DR RV F L Sbjct: 61 DLLRSGKFSPIDTASMPGQPHT-DSELDYRAWAATGVEAILVGSVTPEGPDRYRVNFTLV 119 Query: 132 DVKDRKQIIGK--------------------KFFSSPASWRKIAHTISDDIYQSITGEKG 171 D + GK + + +R+ AH ISD +Y+ +TGEKG Sbjct: 120 DAIRGQITGGKAQALNNGQLTNSNDHILDSRQTVITGEGFRQYAHRISDVVYEKLTGEKG 179 Query: 172 DFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 F +RI +V + L V D DG N L S++ L P +SP+ K+AY T Sbjct: 180 AFMTRIAYVVVRDRKTNAFPYQLVVADYDGVNETMLLRSKEP-LMSPSWSPDGTKLAYVT 238 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++++ ++Y+ D + ++ +F + AP FS NGK+ + + KD +IY +D+ Sbjct: 239 FENKRS-QIYIQDLYT-MSRTQMTDFSGINSAPVFSPNGKQLAMVLSKDGNPEIYVMDIA 296 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 S ER+T I+ S+SPD ++F S+R GK Q+Y + + +R++ D E + Sbjct: 297 SKRLERITRNRAIDTEPSWSPDGKSLIFSSERGGKPQIYRVDLASNSVRRVTFDGEMNLG 356 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +P G + + + I + ++L + ++P+ +P+G +I+S Sbjct: 357 G-TITPDGGRMVMVNRTRGNYNIAAQDLNNGNIQVLTKTYLDESPSIAPNGSMIIYSTLH 415 Query: 411 DGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 G L + L+GR + L + P W F+ Sbjct: 416 QGKQVLSL--VSLDGRFKARLPASDGQVKSPSWSPFL 450 >gi|300692237|ref|YP_003753232.1| protein tolB, component of the tol-pal system [Ralstonia solanacearum PSI07] gi|299079297|emb|CBJ51969.2| protein tolB, component of the tol-pal system [Ralstonia solanacearum PSI07] Length = 433 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 120/450 (26%), Positives = 200/450 (44%), Gaps = 22/450 (4%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M +R F L + LL+VL G A + V A S IA F + Sbjct: 1 MMMRNFWKSGLRRSAWIGLLMVLCAGV----ARAQLYVEIAGAGSSQYPIAIANFQGESQ 56 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 + ++ ++ DL S F+ + + P W S GA V G V + G Sbjct: 57 ISQNMTAIIRSDLVHSGRFSNVDVAGA---VVPDSPAPDLGAWKSRGAAAFVGGTVTRNG 113 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 DR + FRL+D + + G R AH I+D IYQ + G++G F +R+ +V Sbjct: 114 -DRYEIRFRLYDTAKGESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSYV 172 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S+ + L + D DGAN + S + I+ P +SP+ KVAY +++ + VY Sbjct: 173 SKVG----RRYQLQISDSDGANPQIALTSNEPII-SPSWSPDGTKVAYVSFESRKPV-VY 226 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D R I N + AP +S +G+R +++ +D IY V+ + RLT + Sbjct: 227 VHDLVAGR-RTVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRS 285 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQ 357 I+ S+SPD I F SDR G Q+Y M G +R++ + P SP Sbjct: 286 SAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPVEGEDAGSAQRVTFKGSYN-TSPRMSPD 344 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G L+A+ G F + V L + + ++P+++ +G+ ++++ + G S Sbjct: 345 GKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTAYDESPSFAANGKFILYATRVGGR--SV 402 Query: 418 LYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 L ++ +GR +++ +P W FM Sbjct: 403 LAAVSTDGRTRQILSLQAGEVREPAWGPFM 432 >gi|161504090|ref|YP_001571202.1| translocation protein TolB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865437|gb|ABX22060.1| hypothetical protein SARI_02188 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 434 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 189/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 4 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 63 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 64 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 122 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 123 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 181 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 182 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 238 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 239 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 298 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 299 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 357 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 358 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 415 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 416 ARLPATDGQVKSPAWSPYL 434 >gi|212712433|ref|ZP_03320561.1| hypothetical protein PROVALCAL_03527 [Providencia alcalifaciens DSM 30120] gi|212684890|gb|EEB44418.1| hypothetical protein PROVALCAL_03527 [Providencia alcalifaciens DSM 30120] Length = 430 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 104/432 (24%), Positives = 189/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +++ + T A +++ + P+ + K+ +V +V DL+ S Sbjct: 7 IVLGFLMLWATVAQAEIRIEITEGVNSAQPIGVVPFKWAGAGAPPQEVGGIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I + Q+ + W +LG +V G+V V ++L DV Sbjct: 67 KFNPIDPNRMPQQPGTASEV-TPDAWTALGINAVVVGQVQPAADGSYVVSYQLVDVAANP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + +F + R AHT SD++++ +TG +G F +RI +V ++ G L V Sbjct: 126 GAVLAQNQFKVTKDWLRYAAHTASDEVFEKLTGIRGAFRTRIAYVVKTN-GGQYPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ + L P +SP+ QK+AY T++ ++ T A +++ + Sbjct: 185 SDYDGFN-QFTVHRSPEPLMSPAWSPDGQKIAYVTFESGS--SALVIQTLSSGAVRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ PDS Sbjct: 242 FPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLGSGQIRQVTDGRSNNTEPSWMPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V+ SD+ G+ Q+Y M NG R+S + + D SP G +A G + I Sbjct: 302 LVYTSDQAGRPQIYKMNINGGSPVRVSYEGSQNQ-DADVSPDGTFLAMVSSGGGQQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 L + P+ +P+G +I+S + T +L + +GR + L T Sbjct: 361 QDLATGNVEYLTSTFLDETPSIAPNGTMVIYSSSQGLGTILQL--VSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|327393166|dbj|BAK10588.1| protein TolB precursor [Pantoea ananatis AJ13355] Length = 431 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 196/439 (44%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L + L + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MKQALRVTLGFFILLWAAVLHAEVRIEITQGVNSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ T+ + + W++LG +V G++ +V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQIQPNADGSYQVSYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R AHT+SD+ +Q +TG KG F +RI +V ++ G Sbjct: 120 VDTAGAPGTVLAQNSYKITKQWLRYAAHTVSDEAFQKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ KVAY T++ ++ T + Sbjct: 179 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVIQTLSNG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ + + + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G Q+Y + NG +RI+ + + V S G + SG Sbjct: 296 WFPDSQTLAYTSDQAGAPQIYKIGINGGSPQRITWEGAQNQDADVAS-DGKSMVMISTSG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + L + + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GAQHVAKQDLVTGAVQTLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|90412129|ref|ZP_01220135.1| translocation protein TolB precursor [Photobacterium profundum 3TCK] gi|90326853|gb|EAS43238.1| translocation protein TolB precursor [Photobacterium profundum 3TCK] Length = 448 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 201/457 (43%), Gaps = 32/457 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK + L + + F A +++ + P+ + + +L +S V++ Sbjct: 1 MKRWIMGLCIALLSFSQI-AQAELELVITEGVDSARPIGVIPFTWEGEGKLPTDISSVIA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ ++ Q + + I + W S+G LVTG++ K V ++L Sbjct: 60 SDLQRSGKFSPVATSKMPQTPDSEEQI-DYNAWTSMGVDALVTGKITKNADGNYVVNYQL 118 Query: 131 WDVKDRKQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 DV + ++ + R+ AH ISD +Y+ +TG+K Sbjct: 119 VDVVRGQLTSGESRGLANGELVLTKDHLLVNNRATVKETRLRQYAHRISDVVYEQLTGDK 178 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F +RI +V S L V D DG N R + S+ Q L P +SP+ K+AY + Sbjct: 179 GAFLTRIAYVVIDDKS-KHPYQLRVADYDGFNERLVLKSQ-QPLMSPAWSPDGSKLAYVS 236 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++++ ++Y+MD + + ++ +PRFS +GK+ I + K ++ IY +L+ Sbjct: 237 FENQQA-QIYIMDIYKGT-RELVTSYPRHNGSPRFSPDGKKLAIVLSKTGSLQIYIKNLE 294 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + ++T+ N A + PD ++F SDR G+ Q+Y + + KR++ + Sbjct: 295 TKKLTQITSGRANNTEAFWDPDGKSLIFTSDRGGQPQIYRVNLADNSTKRLTWQGSQNLG 354 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +P G + S F I ++L + ++P+ +P+G +I+S Sbjct: 355 GQ-LTPDGRYLVMVNRSDTGFNIAKQDLKTGAVQVLTKTFLDESPSIAPNGGMVIYSSVN 413 Query: 411 DGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L SID GR + L T P W F+ Sbjct: 414 NKSNELSLVSID--GRFKARLPTTNGRVRAPSWGPFL 448 >gi|327481491|gb|AEA84801.1| translocation protein TolB [Pseudomonas stutzeri DSM 4166] Length = 433 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 112/441 (25%), Positives = 206/441 (46%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M +L LLVL+ ++ + S + IA F L ++E++ Sbjct: 1 MINSLRGLLVLLCCLAGIAVAQEKNIVVTSGADRAIPIAVVPFGWQGGTVLPEDMAEIIG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 D++ + +F I + + T I ++DW +LGAQ ++ G + G RL+ + + Sbjct: 61 NDMRNTGIFQPIPRQNMISMPTRGSEII-YRDWKALGAQYVMVGNIEPAG-GRLQARYEV 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG-II 189 ++V +Q++ SP R +AH +D ++ +TG KG F++R+L+V+ + G Sbjct: 119 FNVTTEQQVMSGTVGGSPDQLRDMAHHAADQSFEKLTGIKGAFSTRLLYVTAERMGGANT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PR+SP+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRYSPDGRRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP FS +G R + KD +IY +DL S +RLTN I+ + Sbjct: 236 REQITNFEGLNGAPAFSPDGNRLAFVLSKDGNPEIYVMDLGSRQLQRLTNHYAIDTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D I + SDR GK Q+Y + + +R++ + +P S + Sbjct: 296 GADGQTIYYTSDRAGKPQIYKQRLGSNSAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + R+L + S ++PT +P+G LI++ ++ G L + +NGR Sbjct: 355 YTNFKVAAQDLQRGNLRILSDTSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|28897834|ref|NP_797439.1| translocation protein TolB [Vibrio parahaemolyticus RIMD 2210633] gi|153838026|ref|ZP_01990693.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ3810] gi|260361765|ref|ZP_05774790.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus K5030] gi|260876994|ref|ZP_05889349.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AN-5034] gi|260899065|ref|ZP_05907506.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus Peru-466] gi|260900754|ref|ZP_05909149.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ4037] gi|32699696|sp|Q87QT9|TOLB_VIBPA RecName: Full=Protein tolB; Flags: Precursor gi|28806047|dbj|BAC59323.1| TolB protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748560|gb|EDM59419.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ3810] gi|308089165|gb|EFO38860.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus Peru-466] gi|308093918|gb|EFO43613.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AN-5034] gi|308110191|gb|EFO47731.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus AQ4037] gi|308113266|gb|EFO50806.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio parahaemolyticus K5030] Length = 450 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 106/458 (23%), Positives = 197/458 (43%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + ++ G HA +++ + P+++ K+ L +S V++ Sbjct: 1 MIKRLLLGMFVLLGSLTNVAHAALELVITDGIDSARPIAVVPFKWEGSQPLPTDISAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + + Q N + F W SLG L+TG + + + V ++L Sbjct: 61 SDLQRSGKFSPVPTNKMPQTPFNESEV-NFDSWTSLGVDALLTGSIKQNEQGDYVVNYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + + K R+ AH ISD +Y+ +TGE Sbjct: 120 VDVVRGQLTGGQSKALGSDGELVLSKDHVLFNKVATVKGPRMREYAHRISDLVYEQLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ QK+AY Sbjct: 180 RGAFMTRIAYVVVN-DKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ ++I ++ APRFS +G + + + K + +Y+ DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGNKLALVLSKTGTLQVYTFDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T + N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 KTRKLTQITRSRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +++S Sbjct: 356 GGQ-ITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 YNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|161615018|ref|YP_001588983.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238898|ref|ZP_02663956.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240606|ref|ZP_02665538.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264358|ref|ZP_02686331.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467689|ref|ZP_02701526.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820117|ref|ZP_02832117.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443806|ref|YP_002039989.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450069|ref|YP_002044782.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470048|ref|ZP_03076032.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737053|ref|YP_002113855.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250927|ref|YP_002145709.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264907|ref|ZP_03164981.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244972|ref|YP_002214718.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390881|ref|ZP_03217492.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929894|ref|ZP_03220915.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911681|ref|ZP_04655518.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364382|gb|ABX68150.1| hypothetical protein SPAB_02778 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402469|gb|ACF62691.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408373|gb|ACF68592.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456412|gb|EDX45251.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712555|gb|ACF91776.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629207|gb|EDX48575.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214630|gb|ACH52027.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243162|gb|EDY25782.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288350|gb|EDY27731.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939488|gb|ACH76821.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603326|gb|EDZ01872.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320888|gb|EDZ06089.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205339859|gb|EDZ26623.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343003|gb|EDZ29767.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347159|gb|EDZ33790.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312911775|dbj|BAJ35749.1| tol-pal system protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226327|gb|EFX51378.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615818|gb|EFY12736.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621377|gb|EFY18233.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623634|gb|EFY20472.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628904|gb|EFY25685.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634886|gb|EFY31616.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636586|gb|EFY33290.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641771|gb|EFY38405.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647827|gb|EFY44307.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651359|gb|EFY47741.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652660|gb|EFY49009.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658641|gb|EFY54902.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664930|gb|EFY61121.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668401|gb|EFY64557.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322675251|gb|EFY71327.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|323129060|gb|ADX16490.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191722|gb|EFZ76975.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200616|gb|EFZ85691.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202287|gb|EFZ87335.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205444|gb|EFZ90410.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212128|gb|EFZ96953.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216147|gb|EGA00876.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221362|gb|EGA05781.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226785|gb|EGA10976.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230999|gb|EGA15115.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234168|gb|EGA18257.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238137|gb|EGA22195.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243572|gb|EGA27590.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247403|gb|EGA31362.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251392|gb|EGA35264.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256485|gb|EGA40217.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260624|gb|EGA44233.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264695|gb|EGA48197.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270959|gb|EGA54394.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 431 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 189/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 296 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|238893776|ref|YP_002918510.1| translocation protein TolB [Klebsiella pneumoniae NTUH-K2044] gi|262041200|ref|ZP_06014412.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329998744|ref|ZP_08303198.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. MS 92-3] gi|238546092|dbj|BAH62443.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041429|gb|EEW42488.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538571|gb|EGF64675.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. MS 92-3] Length = 431 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 104/439 (23%), Positives = 193/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + ++ V +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ T+ + + W++LG +V G+V + +V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVTQNPDGSYQVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + F + R AH SD +++ +TG KG F +RI +V + G Sbjct: 120 VDTGGAPGTTLAQGSFKVTKQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N ++L Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 YPYELRVSDYDGYN-QFLVHRSSQPLMSPAWSPDGSKLAYVTFESGR--SALVVQTLANA 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + ++I +F AP FS +G + ++ K ++++Y +DL S ++TN N S Sbjct: 236 SVRQIASFPQHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPS 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 296 WFPDSQNLAFTSDQAGRPQVYKVNINGGTPQRITWEGSQNQ-DADVSADGKTMVMVSSAG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I + ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLETGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|145588463|ref|YP_001155060.1| translocation protein TolB [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046869|gb|ABP33496.1| TolB, N-terminal domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 436 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 217/445 (48%), Gaps = 17/445 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + + ++L ++ + F T A + + S IA +F ++L ++ Sbjct: 5 MNKMILKLLSLSAIVAALLCGFATPALAQMNIEITGVGQSLYPIAVMRFKDENKLPTNIT 64 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 E++ +DL RS F + + + + P ++ W + GA LV G V++ G + + Sbjct: 65 EIIRQDLARSGYFKNTENGNATE---SDEGTPNYKSWAARGADALVVGSVVQTGNGQFDI 121 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++L+D++ + + G SS + R +AH I+DDI + GE+G F++R+ +V + Sbjct: 122 HYKLFDIRKSQGLGGLNLNSSADNLRAVAHKIADDIIFKLLGERGVFSTRLSYVIKDG-- 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG NIR S + I+ P +SP+ +KVAY +++D + +Y+ + Sbjct: 180 --KRYRLVISDADGQNIRNAMNSSEPII-SPSWSPDGKKVAYVSFEDRKPV-IYVHELAT 235 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + N + AP +S +GK+ +S+ KD IY ++ + RLT I+ Sbjct: 236 GRRIS-LSNQKGNNSAPAWSPDGKKLAVSLSKDGNTQIYGINADGSGLHRLTRGNTIDTE 294 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YS D I F SDR G Q+Y M + G KR++ K+ P SP G +A+ Sbjct: 295 PQYSADGRYIYFTSDRGGNPQIYRMSAEGEQVEGAKRVTF-KQGFVTSPRISPDGKYLAY 353 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G + + ++ + L + ++ ++P+++ +GR +++S K G L ++ + Sbjct: 354 IANVGGAYRLYILNLATGDSQALTDGTSDESPSFAANGRYVLYSTKVGGKR--VLAAVSV 411 Query: 424 NGRNETLINTPA-YASDPQWVGFMD 447 +G ++ +++ P P W FMD Sbjct: 412 DGNSKQVLSIPGSDVRQPSWGPFMD 436 >gi|90580127|ref|ZP_01235935.1| translocation protein TolB precursor [Vibrio angustum S14] gi|90439012|gb|EAS64195.1| translocation protein TolB precursor [Vibrio angustum S14] Length = 442 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 209/451 (46%), Gaps = 27/451 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVV 69 + LCL L+ + F HA +++ + P+ + ++ +L +S V+ Sbjct: 3 RWIMGLCLALLSVSQF----AHAELELVITDGVDSARPIGVVPFQWEGEGKLPTDISAVI 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DLQRS F+ + + Q N I + W+ +G +VTG ++K V ++ Sbjct: 59 ASDLQRSGKFSPVPESKLPQLPHNESQI-DYSAWSKMGVDAVVTGTIVKNQDGNYTVNYQ 117 Query: 130 LWDVKDRKQ-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 L D+ K ++ + P R+ AH ISD IYQ +TGE+G F +R Sbjct: 118 LVDIVKGKLAAGTEGAAKGDYLLLNNQASVKPNRMRQYAHRISDLIYQKLTGERGAFLTR 177 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V ++ S L V D DG N R + S+ Q L P +SP+ K+AY +++ Sbjct: 178 IAYVDDNRSS-KFPYQLRVADYDGYNERVVLKSK-QPLMSPAWSPDGSKLAYVSFESGKA 235 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 +++++D + + + ++ +P+FS +G + + + K ++ IY DL++ + Sbjct: 236 -QIFVLDIYTGK-REVVADYPRHNGSPQFSPDGTKLAMVLSKTGSLQIYIKDLKTKQLRQ 293 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T+ N A ++PD + F SDR G+ Q+Y + D +R++ + P +P Sbjct: 294 ITHGRANNTEAVWAPDGQSLYFTSDRGGRPQVYHLDLAIGDTQRVTWQGAQN-MGPQITP 352 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G + S + I ++L + ++P+ +P+G +I+S ++ T Sbjct: 353 DGRYLVVVNRSDSGYNIAKQDLKTGAMQILTKARLAESPSIAPNGSMIIYSSAQNNGT-Y 411 Query: 417 KLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +L + ++GR + L +T P W F+ Sbjct: 412 ELSLVSIDGRFQARLPSTSKRVRAPSWGPFL 442 >gi|156973900|ref|YP_001444807.1| translocation protein TolB [Vibrio harveyi ATCC BAA-1116] gi|156525494|gb|ABU70580.1| hypothetical protein VIBHAR_01610 [Vibrio harveyi ATCC BAA-1116] Length = 442 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 108/451 (23%), Positives = 196/451 (43%), Gaps = 33/451 (7%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + VL+G + HA +++ + PV++ K+ + L +S V++ DLQRS Sbjct: 1 MFVLLGSL-TSVAHAALELVITDGIDSARPVAVVPFKWEGSEPLPTDISAVIASDLQRSG 59 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F+ + Q N + F W LG L+TG + K + V ++L DV + Sbjct: 60 KFSPVPTSKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNYVVNYQLVDVVRGQ 118 Query: 138 QIIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 GK R+ AH ISD +Y+ +TGE+G F +R Sbjct: 119 LTGGKSKALGGDGELVLSKDHVLFNKVATVEGPRMREYAHRISDLVYEQLTGERGAFMTR 178 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V + L V D DG N R + S+ Q L P +SP+ QK+AY ++ + Sbjct: 179 IAYVVVN-DKDNFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYVSFQNGQA 236 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 +++M+ ++I ++ APRFS +G + + + K ++ +Y++DL++ + Sbjct: 237 -EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGSQLALVLSKTGSLQVYTLDLKTRKLTQ 294 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T N + PD ++F SDR GK Q+Y + R++ + +P Sbjct: 295 ITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLGSGSTNRLTWQGSQNLGGQ-ITP 353 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G + S F + + ++L + ++P+ +P+G +I+S + Sbjct: 354 DGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVIYSSIYNKKN-- 411 Query: 417 KLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + ++GR + L T P W F+ Sbjct: 412 VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 442 >gi|326622474|gb|EGE28819.1| translocation protein TolB precursor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627053|gb|EGE33396.1| translocation protein TolB precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 434 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 189/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 4 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 63 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 64 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQL 122 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 123 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 181 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 182 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 238 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 239 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 298 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 299 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 357 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 358 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 415 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 416 ARLPATDGQVKSPAWSPYL 434 >gi|315180559|gb|ADT87473.1| translocation protein TolB precursor [Vibrio furnissii NCTC 11218] Length = 439 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 104/439 (23%), Positives = 195/439 (44%), Gaps = 32/439 (7%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +A +++ + P++I K+ +L VS V++ DLQRS F+ I + Q Sbjct: 9 ANAALELVITDGINSARPIAIVPFKWEGKTKLPQDVSGVIASDLQRSGKFSPIPTNKMPQ 68 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK------------ 137 N + +F W S+G L+TG + + + ++L DV + Sbjct: 69 TPYNEADV-KFDAWTSIGVDALLTGSITQNADGNYVINYQLVDVVRGQLTQGQSRALSSD 127 Query: 138 ---------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 + K R+ AH I+D +Y+ +TGE+G F +RI +V + Sbjct: 128 GQLVLSKDHVLFNKVATVPAKRMREYAHRIADLVYEELTGERGAFLTRIAYVVVN-DKDA 186 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N R + S+ Q L P +SP+ +K+AY ++ + +Y+M+ Sbjct: 187 YPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIYIMNIYTG- 243 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +++ ++ APRFS +GK + + K ++ +Y++DL S ++T+ N Sbjct: 244 EREKVTSYPRHNGAPRFSPDGKTLALVLSKTGSLQVYTLDLTSRKLTQITSGRSNNTEPF 303 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++PD ++F SDR GK Q+Y + KR++ + +P G + S Sbjct: 304 WNPDGKSLIFTSDRGGKPQIYQVNLTDGATKRLTWQGSQNLGGQ-ITPDGRFLVMVNRSN 362 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 F + + ++L + ++P+ +P+G +I+S + + L + ++GR + Sbjct: 363 SGFNLAKQDLETGSVQILTKTLLDESPSIAPNGGMVIYSSIYN--KANVLSMVSIDGRFK 420 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W F+ Sbjct: 421 ARLPATNGRVRAPAWSPFL 439 >gi|167554282|ref|ZP_02348023.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321483|gb|EDZ09322.1| tol-Pal system beta propeller repeat protein TolB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 431 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 190/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R +HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYASHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 296 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|323495161|ref|ZP_08100246.1| translocation protein TolB [Vibrio brasiliensis LMG 20546] gi|323310601|gb|EGA63780.1| translocation protein TolB [Vibrio brasiliensis LMG 20546] Length = 437 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 104/445 (23%), Positives = 197/445 (44%), Gaps = 30/445 (6%) Query: 24 IGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS 83 + F + + + + P++I K+ +L VS V++ DLQRS F+ ++ Sbjct: 1 MSAFQVANAALELVITDGIDSARPIAIVPFKWEGNGKLPEDVSAVIASDLQRSGKFSPVA 60 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ----- 138 + Q + + F W LG LVTG + + + + ++L DV + Sbjct: 61 TNKMPQTPYSEAEV-DFNAWTGLGVDALVTGSITQNAEGNYVINYQLVDVVRGQLTQGQS 119 Query: 139 ----------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + K+ R+ AH ISD +Y+++TGEKG F +RI +V Sbjct: 120 KALSDDGQLVLSKDHVLFNKRATVPGKRLREYAHRISDLVYEALTGEKGAFLTRIAYVVV 179 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + L V D DG N R + S+ Q L P +SP+ +K+AY ++ + +++M Sbjct: 180 N-DKDQFPYQLRVSDYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIFIM 236 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + +++ ++ APRFS +G + + + K ++ +Y++DL S ++T Sbjct: 237 NIYTGE-REKVTSYPRHNGAPRFSPDGSKLALVLSKTGSLQVYTLDLNSRKLTQITRGRS 295 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N + PD ++F SDR GK Q+Y + + KRI+ + +P G + Sbjct: 296 NNTEPFWHPDGKSLIFTSDRGGKPQIYQVDLASNSTKRITWQGSQNLGGQ-ITPDGRFLV 354 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 S F + + + ++L + ++P+ +P+G +I+S + + L + Sbjct: 355 MVNRSNTGFNLAKLDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYN--KTNVLSMVS 412 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 ++GR + L T P W F+ Sbjct: 413 IDGRFKARLPATNGRVRAPAWSPFL 437 >gi|330811387|ref|YP_004355849.1| Colicin import protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379495|gb|AEA70845.1| Colicin import protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 433 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 109/441 (24%), Positives = 210/441 (47%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M+ L +LV+I ++ + S +P+++ + L ++E++ Sbjct: 1 MRNLLRSMLVVICCLAGIAVAEEKNILVTSGSDRATPIAVVPFGWQGGSVLPDDMAEIIG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + ++DW +LGAQ ++ G ++ G RL+V++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-YRDWKALGAQYIMVGSIVPAG-GRLQVQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ S R ++H I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGSVSGSVDQLRDMSHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + KD DIY ++L S + R+TN IN + Sbjct: 236 REQITNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNLASRSISRVTNGPGINTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S I F SDR GK Q+Y + G +R++ + +P S + Sbjct: 296 GKDGSTIYFTSDRGGKPQIYKTSAGGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAAQDLQRGSVKILTDSTLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|329295948|ref|ZP_08253284.1| translocation protein TolB [Plautia stali symbiont] Length = 431 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 100/439 (22%), Positives = 197/439 (44%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L + L + +HA V++ P+ + ++ + +V+ Sbjct: 1 MKQALRVTLGFFVLLWAAMLHAEVRIEITQGVNTARPIGVVPFQWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ T+ + + W++LG +V G+V +V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVTPNADGSYQVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ KVAY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVVQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ ++ AP FS +G + ++ K ++++Y +DL S T ++T+ + + + Sbjct: 236 AIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVIDLASGQTRQVTDGRYNSTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G Q+Y + NG +RI+ + + D S G + +G Sbjct: 296 WFPDSQTLAYTSDQAGAPQIYKVNVNGGTPQRITWEGAQNQ-DADVSSDGKTMVMISSAG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + + + + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GAQHVAKQDLETGAVQTITDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQGKFPAWSPYL 431 >gi|300722397|ref|YP_003711683.1| hypothetical protein XNC1_1420 [Xenorhabdus nematophila ATCC 19061] gi|297628900|emb|CBJ89483.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Xenorhabdus nematophila ATCC 19061] Length = 439 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 190/432 (43%), Gaps = 12/432 (2%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +++ + HA V++ + P+ + K+ + E+ + +++ DL+ S Sbjct: 15 IVLGFLMMWAALAHAEVRIEITQGVDSARPIGVVPFKWTGVGEVPENIGSIIAADLRNSG 74 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ T + W++LG +V G + + V ++L D Sbjct: 75 KFNPIDPTRMPQQPTTASEV-TPAAWSALGIDSVVVGHIQPSADGKFLVSYQLVDTAGAP 133 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + +F R AHT+SD +++ +TG KG F +RI ++ ++ L V Sbjct: 134 GTVLAQDQFSIERKWLRLSAHTVSDQVFEKLTGIKGAFRTRIAYIVKNTNGAKFPYELRV 193 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N + + + L P +SP+ K+AY T++ V + T + + + Sbjct: 194 SDYDGYN-QSMVHRSPEPLMSPAWSPDASKLAYVTFEGGSSSLV--IQTLATGTKREVAS 250 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +DL SN ++T+ N S+ PD+ Sbjct: 251 FPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASNQIRQVTDGRSNNTEPSWMPDNQT 310 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V+ SD+ G+ QLY + NG +R++ + + D SP G + + I Sbjct: 311 LVYTSDQGGRPQLYKIDINGGAPERLTWEGSQNQ-DADVSPDGSFVVMVSSASGSQHIAK 369 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 ++L + + P+ +P+G +I+S + G+ L + +GR + L T Sbjct: 370 QDLATGSVQILTDTFLDETPSIAPNGTMVIYSSTQG--WGTILQLVSTDGRFKARLPATD 427 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 428 GQVKSPAWSPYL 439 >gi|224582567|ref|YP_002636365.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467094|gb|ACN44924.1| translocation protein TolB precursor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 434 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 97/439 (22%), Positives = 189/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 4 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 63 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V + ++L Sbjct: 64 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNIAYQL 122 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 123 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 181 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 182 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 238 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 239 SVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 298 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 299 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 357 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 358 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 415 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 416 ARLPATDGQVKSPAWSPYL 434 >gi|163802041|ref|ZP_02195937.1| translocation protein TolB precursor [Vibrio sp. AND4] gi|159174182|gb|EDP58990.1| translocation protein TolB precursor [Vibrio sp. AND4] Length = 449 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 104/457 (22%), Positives = 199/457 (43%), Gaps = 31/457 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + ++ G + HA +++ + P+++ K+ + L +S V++ Sbjct: 1 MIKRLLLGMFVLLGSLTSVAHAALELVITDGIDSARPIAVVPFKWEGSEPLPTDISAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + + Q N + F W LG L+TG + K + V ++L Sbjct: 61 SDLQRSGKFSPVPTNKMPQTPFNESEV-NFDAWTGLGVDALLTGSIKKNEQGNFVVNYQL 119 Query: 131 WDVKDRKQIIGKK--------------------FFSSPASWRKIAHTISDDIYQSITGEK 170 DV + GK R+ AH ISD +Y+ +TG++ Sbjct: 120 VDVVRGQLTGGKSKALGDGELVLSKDHILFNKVATVQGPRMREYAHRISDLVYEQLTGDR 179 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F +RI +V + L + D DG N R + S+ Q L P +SP+ +K+AY + Sbjct: 180 GAFMTRIAYVVVN-DKDSFPYQLRISDYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVS 237 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + + +++M+ ++I ++ AP+FS +G + + + K ++ +Y++DL+ Sbjct: 238 FQNGQA-EIFIMNIYTGE-REKITSYPRHNGAPKFSPDGSQLALVLSKTGSLQVYTLDLK 295 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 TRKLSQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYKVDLASGSTNRLTWQGSQNLG 355 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +P G + S F + + ++L + ++P+ +P+G +I+S Sbjct: 356 GQ-ITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTQTLLDESPSIAPNGGMVIYSSIY 414 Query: 411 DGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 NKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 449 >gi|330502225|ref|YP_004379094.1| translocation protein TolB [Pseudomonas mendocina NK-01] gi|328916511|gb|AEB57342.1| translocation protein TolB [Pseudomonas mendocina NK-01] Length = 432 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 105/439 (23%), Positives = 209/439 (47%), Gaps = 15/439 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 ++I L L++L+G + ++ + +P+++ + L +S+++ D Sbjct: 5 IRIALLGLVMLVGSV---QAADPLVISQGADRATPIAVVPFGWQGGSVLPEDMSQIIGND 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F I + + T + ++DW +LGAQ ++ G ++ G RL+V++ L++ Sbjct: 62 LRNSGYFEPIPRQNMISLPTQASEVI-YRDWKALGAQYVLVGNIVPNG-GRLQVQYALFN 119 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKN 191 V +Q++ R +AH I+D ++ +TG KG F++R+L+V+ E + + + Sbjct: 120 VNTEQQVMTGNVGGGTDQLRDMAHHIADQSFEKLTGVKGAFSTRLLYVTAERMGANNTRY 179 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L D DGA L SR+ I P F+P+ +++AY +++ R+++ R + Sbjct: 180 TLQRSDYDGARAVTLLQSREPI-LSPSFAPDGRRIAYVSFEQRRP-RIFVQHIDTGR-RE 236 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I NF + AP +S +G R + +D +IY +D+ S R+TN I+ + Sbjct: 237 QITNFEGLNGAPAWSPDGNRLAFVLSRDGNPEIYVMDMGSRQMRRITNHYAIDTEPFWGK 296 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-- 369 D + F SDR G+ Q+Y N +R++ + +P S + Sbjct: 297 DGQTLYFTSDRAGRPQIYKTNINSGAVERVTFVGNYNA-NPKLSADEKTLVMIHRQDGFT 355 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 F + + ++ R+L + S ++PT +P+G LI++ ++ G L NGR Sbjct: 356 VFKVAAQDLETNRLRILSDTSLDESPTVAPNGTMLIYATRQQGRG--VLMLASTNGRVRL 413 Query: 430 LINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 PLPTAQGEVREPSWSPYLN 432 >gi|254000100|ref|YP_003052163.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylovorus sp. SIP3-4] gi|253986779|gb|ACT51636.1| Tol-Pal system beta propeller repeat protein TolB [Methylovorus sp. SIP3-4] Length = 424 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 110/412 (26%), Positives = 199/412 (48%), Gaps = 12/412 (2%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A + + + IA F ++ VV DL+RS +F ++ + + Sbjct: 21 AALTIEIVGGAAQQIPIAVVPFAKTPGAQDDIATVVGADLRRSGLFRVLETRGVVNQPHD 80 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 + ++ +W ++ AQ L G V RL+V FRL DV + Q+ G +F + + R Sbjct: 81 LPEV-KYPEWAAIQAQALTIGSVETLPGGRLKVSFRLLDVLKQNQLAGLEFNIAASQQRA 139 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 AH I+D IY+ +TGE G F++RI +++++ + +L V D DG N + + S + + Sbjct: 140 TAHKIADIIYEKLTGEPGVFSTRIAYITKTAG----RYALQVADADGFNPQTVMSSNEPV 195 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PR+SP+ K+AY +Y+ + + + + + + NF+ AP +S +G R Sbjct: 196 I-SPRWSPDGTKLAYVSYEKKKP--IVFVQSLVTGQRNVVANFKGNNSAPAWSPDGNRLA 252 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 I + +Y ++ ++LT T I+ ++PD S I F S R G Q+Y M S Sbjct: 253 IVLTHSANSQVYVINADGTGLKQLTYTTSIDTEPVWTPDGSAIYFTSSRGGGPQIYRMAS 312 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G D KR++ D + P SP G +A+ K KF + V Q ++L + + + Sbjct: 313 TGGDAKRVTFDGNYNV-SPRISPDGKTLAYIKQDNGKFRVAVQDVASGQVQVLSDTAQDE 371 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 +P+++P+GR ++++ G L ++ +GR + L T +P W Sbjct: 372 SPSFAPNGRMILYATSISGRGA--LAAVSADGRVKQRLSETGGDVREPAWGP 421 >gi|291616740|ref|YP_003519482.1| TolB [Pantoea ananatis LMG 20103] gi|291151770|gb|ADD76354.1| TolB [Pantoea ananatis LMG 20103] Length = 453 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 103/440 (23%), Positives = 196/440 (44%), Gaps = 13/440 (2%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVV 69 MK L + L + +HA V++ + P+ + K+ + +V Sbjct: 22 KMKQALRVTLGFFILLWAAVLHAEVRIEITQGVNSARPIGVVPFKWAGPGAAPEDIGGIV 81 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DL+ S FN + + Q+ T+ + + W++LG +V G++ +V ++ Sbjct: 82 AADLRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQIQPNADGSYQVSYQ 140 Query: 130 LWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L D + + + R AHT+SD+ +Q +TG KG F +RI +V ++ G Sbjct: 141 LVDTAGAPGTVLAQNSYKITKQWLRYAAHTVSDEAFQKLTGIKGAFRTRIAYVVQTN-GG 199 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG N +++ Q L P +SP+ KVAY T++ ++ T + Sbjct: 200 QFPYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVIQTLSN 256 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ + + Sbjct: 257 GAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEP 316 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++ PDS + + SD+ G Q+Y + NG +RI+ + + V S G + S Sbjct: 317 TWFPDSQTLAYTSDQAGAPQIYKIGINGGSPQRITWEGAQNQDADVAS-DGKSMVMISTS 375 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + + L + + P+ +P+G +I+S + GS L + +GR Sbjct: 376 GGAQHVAKQDLVTGAVQTLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVSTDGRF 433 Query: 428 E-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 434 KARLPATDGQVKFPAWSPYL 453 >gi|16764118|ref|NP_459733.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414135|ref|YP_151210.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363057|ref|YP_002142694.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205352012|ref|YP_002225813.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856192|ref|YP_002242843.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|32699711|sp|Q8ZQT5|TOLB_SALTY RecName: Full=Protein tolB; Flags: Precursor gi|67461910|sp|Q5PCN2|TOLB_SALPA RecName: Full=Protein tolB; Flags: Precursor gi|226705890|sp|B5QX24|TOLB_SALEP RecName: Full=Protein tolB; Flags: Precursor gi|226705891|sp|B5R699|TOLB_SALG2 RecName: Full=Protein tolB; Flags: Precursor gi|226705892|sp|B5BC62|TOLB_SALPK RecName: Full=Protein tolB; Flags: Precursor gi|16419258|gb|AAL19692.1| tol protein required for outer membrane integrity [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128392|gb|AAV77898.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094534|emb|CAR60054.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205271793|emb|CAR36627.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707995|emb|CAR32284.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246011|emb|CBG23813.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992489|gb|ACY87374.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157339|emb|CBW16828.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320085019|emb|CBY94808.1| Protein tolB Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|332987685|gb|AEF06668.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 430 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 187/428 (43%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + K+ + +V+ DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ + + W++LG +V G+V V ++L D + Sbjct: 71 LDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + + R HT SD++++ +TG KG F +RI +V ++ G L V D D Sbjct: 130 AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N +++ Q L P +SP+ K+AY T++ ++ T + A +++ +F Sbjct: 189 GYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F Sbjct: 246 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y M NG +RI+ + + D S G + + + I Sbjct: 306 SDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNNGQQHIAKQDLV 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 SPAWSPYL 430 >gi|328473193|gb|EGF44041.1| translocation protein TolB [Vibrio parahaemolyticus 10329] Length = 450 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 102/458 (22%), Positives = 194/458 (42%), Gaps = 30/458 (6%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + ++ L + ++ + + + + P+++ K+ L VS V++ Sbjct: 1 MTRRLLLGMFVLFSCMTNVANAALELVITDGIDSARPIAVVPFKWEGTQALPTDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q N + F W SLG L+TG + + + V ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPFNESEV-NFDSWTSLGVDALLTGSIKQNEQGDYVVNYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 DV + + K R+ AH ISD +Y+ +TGE Sbjct: 120 VDVVRGQLTGGQSKALGSDGELVLSKDHVLFNKVATVKGPRMREYAHRISDLVYEQLTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ QK+AY Sbjct: 180 RGAFMTRIAYVVVN-DKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGQKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ ++I ++ APRFS +G + + + K + +Y+ DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGNKLALVLSKTGTLQVYTFDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ ++T + N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 KTRKLTQITRSRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +++S Sbjct: 356 GGQ-ITPDGRFLVMVNRSDSGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 YNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|317047357|ref|YP_004115005.1| Tol-Pal system beta propeller repeat-containing protein TolB [Pantoea sp. At-9b] gi|316948974|gb|ADU68449.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. At-9b] Length = 431 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 97/439 (22%), Positives = 196/439 (44%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L + L + +HA V++ P+ + ++ + +V+ Sbjct: 1 MKQALRVTLGFFVLLWAAMLHAEVRIEITQGVNTARPIGVVPFQWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ T+ + + W++LG +V G+V ++ ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPTSAQQV-QPAAWSALGIDAVVVGQVTPNADGSYQIAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ + L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPEPLMSPTWSPDGSKLAYVTFESGK--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ + + + Sbjct: 236 AIRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQITDGRYNSTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G Q+Y + NG +RI+ + + D + G + +G Sbjct: 296 WFPDSQTLAYTSDQAGAPQIYKIGINGGAPQRITWEGAQNQ-DADVAADGKSMVMISSAG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + L + + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GAQHVAKQDLETGAVQTLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|261252510|ref|ZP_05945083.1| TolB protein precursor [Vibrio orientalis CIP 102891] gi|260935901|gb|EEX91890.1| TolB protein precursor [Vibrio orientalis CIP 102891] Length = 438 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 107/446 (23%), Positives = 196/446 (43%), Gaps = 30/446 (6%) Query: 23 LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLI 82 ++ F + + + + P++I K+ +L VS+V++ DLQRS F+ I Sbjct: 1 MMSVFQTANAALELVITDGIDSARPIAIVPFKWEGNSQLPEDVSKVIASDLQRSGKFSPI 60 Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ---- 138 + Q N + F W LG LVTG + + + + ++L DV + Sbjct: 61 ATSKMPQTPYNETEV-DFGAWTGLGVDALVTGSISQNAEGNYVINYQLVDVVRGQLTQGQ 119 Query: 139 -----------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 + K+ R+ AH ISD +Y+++TGEKG F +RI +V Sbjct: 120 SKALSDDGQLVLSKDHVMFNKRATVPGDRLREYAHRISDLVYEALTGEKGAFLTRIAYVV 179 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S L V D DG N R + S+ Q L P +SP+ +K+AY ++ + +++ Sbjct: 180 VS-DKDQFPYQLRVSDYDGHNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA-EIFI 236 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 M+ ++I ++ APRFS +G + + + K ++ +Y++DL++ ++T Sbjct: 237 MNIYTGE-REKISSYPRHNGAPRFSPDGSKLALVLSKTGSLQVYTLDLKTRKLTQITRGR 295 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N + PD +VF SDR GK Q+Y + RI+ + +P G + Sbjct: 296 SNNTEPFWHPDGKSLVFTSDRGGKPQIYQVDLANGSTSRITWQGSQNLGGQ-ITPDGRFL 354 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 S F + + + + L + ++P+ +P+G +I+S + + L + Sbjct: 355 VMVNRSNSGFNLAKLDLETGAMQTLTKTLLDESPSIAPNGGMVIYSSTYN--KSNVLSMV 412 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 ++GR + L T P W F+ Sbjct: 413 SIDGRFKARLPVTNGRVRAPAWSPFL 438 >gi|221134414|ref|ZP_03560719.1| Periplasmic component of the Tol biopolymer transport system [Glaciecola sp. HTCC2999] Length = 455 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 108/453 (23%), Positives = 210/453 (46%), Gaps = 31/453 (6%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 +L+ I HA + + N +P+++ + L G++S+V++ DL+R Sbjct: 9 TILITSILLCVAIKAHAQLNIVITEGVDNATPIAVVPFGWEGEGILPGELSDVINHDLRR 68 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S FN ++ Q + S+ +Q W G +V G+V + G DR +++F+L D + Sbjct: 69 SGRFNPMNMSQMPQFPRDISSV-NYQSWVDKGINTIVVGKVKELGGDRFQIDFQLIDTQA 127 Query: 136 RKQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 Q I G+ + +R+ H ISD +Y+ +TG++G F + Sbjct: 128 GSQLEKSGQMLLDGQLVAGQSQLIAGRTLTVTGRDFRQFGHRISDIVYEKLTGQRGAFLT 187 Query: 176 RILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 RI +V+ + + L + D DG N L S++ L P +SP+ K+AY ++++ Sbjct: 188 RIAYVAVRDRETVARPYQLVIADYDGENELALLSSKEP-LMSPSWSPDGNKLAYVSFENG 246 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++++ D K + +F + APRFS +GK+ + + KD DIY +++ + Sbjct: 247 KP-QIFIQDIYTMSRVK-LTDFPGINGAPRFSPDGKKIAMVLSKDGNPDIYVMEIATRQL 304 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 R+T I+ S++P+ ++VF S+R GK Q+Y + + KR++ + + + Sbjct: 305 TRVTRHRAIDTEPSWAPNGKELVFSSERGGKPQIYRVNLETNRIKRLTFEGDMNLGG-TI 363 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 +P G + + + I + ++L ++P+ +P+G +I+S +G Sbjct: 364 TPDGTELVVVNRTNGNYHIARQNLNDGAMQVLTTTFLDESPSIAPNGSMIIYSTLHEGTQ 423 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + L+GR + L P W F+ Sbjct: 424 VLSL--VSLDGRFKARLPGVAGQIKAPSWSPFL 454 >gi|300715889|ref|YP_003740692.1| protein TolB (translocation of group A colicins) [Erwinia billingiae Eb661] gi|299061725|emb|CAX58841.1| Protein TolB (Translocation of group A colicins) [Erwinia billingiae Eb661] Length = 430 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 99/445 (22%), Positives = 193/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + ++ LL V HA V++ P+ + K+ Sbjct: 1 MKQAFRVAMSFLLLFV-------AVAHAEVRIEITQGVNTARPIGVVPFKWAGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN + + Q+ T + + W +LG +V G+V Sbjct: 54 IGGIVAADLRNSGKFNPLDRSRLPQQPTTAAEV-QPAAWTALGIDAVVVGQVQPGADGSY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT SD+ ++ +TG KG F +RI +V + Sbjct: 113 LVSYQLVDTSGNPGAILAQNQYKVTKQWLRYAAHTASDEAFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N + Q L P +S + K+AY T++ ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYN-QNTVHRSPQPLMSPAWSKDGSKLAYVTFESGK--SALVV 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A K++ +F AP FS +G + ++ K ++++Y +DL S +LT+ + Sbjct: 229 QTLANGAIKQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQINQLTDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + ++G +R++ + + D S G + Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKISASGGTAQRLTWEGGQNQ-DADVSSDGKSLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +G + + + L + + P+ +P+G +I+S + GS L + Sbjct: 348 MISTNGGAQHVARQDLETGAVQQLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|53804448|ref|YP_113693.1| translocation protein TolB [Methylococcus capsulatus str. Bath] gi|67461931|sp|Q609K4|TOLB_METCA RecName: Full=Protein tolB; Flags: Precursor gi|53758209|gb|AAU92500.1| tolB protein [Methylococcus capsulatus str. Bath] Length = 424 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 110/435 (25%), Positives = 212/435 (48%), Gaps = 12/435 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N + + + + A ++V + + +A F + L +S++VS Sbjct: 1 MNKARAIARWISFLLLIAAGQVCAELQVQISQGVEGAIPVAVVPFANQGSLSDSLSQIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F +++ + +++ T PD + + W +LG +V G++ G +F + Sbjct: 61 ADLQRSGRFRTLAESAMQERPTAPDQVQQ-AAWQALGQDFVVVGQIRPSGDG-YEADFHV 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 DV ++ + A R+ AH I+D IY++ITGE G F +R+ +VS S + Sbjct: 119 VDVIRGTLVVSYRLPFGRAETRQAAHRIADVIYKAITGEPGAFATRVAYVSVSGEGANRR 178 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V D DG N + + S + I P +SP+ K+AY +++ +Y+ Sbjct: 179 YNLQVADTDGYNPQSVIVSNEPI-MSPAWSPDGTKIAYVSFESRRSA-IYVQTLATGE-R 235 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ + + AP FS +G R +++ KD DIY ++L S R+T+ I+ ++S Sbjct: 236 RKVSDAPGINGAPAFSPDGSRLALTLSKDGNPDIYVMNLGSGGLTRITDYSGIDTEPNWS 295 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D IVF SDR GK QLY++ ++G +R++ + + + V+SP G +A G Sbjct: 296 RDGRSIVFTSDRGGKPQLYLVSASGGPAERLTYEGDYNARG-VFSPDGRSLAMVHGKGGD 354 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NET 429 + I VM R+L ++P ++P+G ++++ ++ +L ++ ++G+ ++ Sbjct: 355 YRIAVMDLASRAVRVLTSGPLDESPGFAPNGSMILYAARRG-----QLAAVSIDGKVRQS 409 Query: 430 LINTPAYASDPQWVG 444 L +P W Sbjct: 410 LRIEGGAVREPAWSP 424 >gi|146306309|ref|YP_001186774.1| translocation protein TolB [Pseudomonas mendocina ymp] gi|145574510|gb|ABP84042.1| TolB, N-terminal domain protein [Pseudomonas mendocina ymp] Length = 432 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 105/439 (23%), Positives = 209/439 (47%), Gaps = 15/439 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 ++I L L++L+G + ++ + +P+++ + L +S+++ D Sbjct: 5 IRIALLGLVMLVGSV---QAADPLVISHGADRATPIAVVPFGWQGGSVLPEDMSQIIGND 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F I + + T + ++DW +LGAQ ++ G ++ G RL+V++ L++ Sbjct: 62 LRNSGYFEPIPRQNMISLPTQASEVI-YRDWKALGAQYVLVGNIVPNG-GRLQVQYALFN 119 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKN 191 V +Q++ R +AH I+D ++ +TG KG F++R+L+V+ E + + + Sbjct: 120 VNTEQQVMTGNVGGGTDQLRDMAHHIADQSFEKLTGVKGAFSTRLLYVTAERMGANNTRY 179 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L D DGA L SR+ I P F+P+ +++AY +++ R+++ R + Sbjct: 180 TLQRSDYDGARAVTLLQSREPI-LSPSFAPDGRRIAYVSFEQRRP-RIFVQHIDTGR-RE 236 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I NF + AP +S +G R + +D +IY +D+ S R+TN I+ + Sbjct: 237 QITNFEGLNGAPAWSPDGNRLAFVLSRDGNPEIYVMDMGSRQMRRITNHYAIDTEPFWGK 296 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-- 369 D + F SDR G+ Q+Y N +R++ + +P S + Sbjct: 297 DGQTLYFTSDRAGRPQIYKTNINSGAVERVTFVGNYNA-NPKLSADEKTLVMIHRQDGFT 355 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 F + + ++ R+L + S ++PT +P+G LI++ ++ G L NGR Sbjct: 356 VFKVAAQDLETNRLRILSDTSLDESPTVAPNGTMLIYATRQQGRG--VLMLASTNGRVRL 413 Query: 430 LINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 414 PLPTAQGEVREPSWSPYLN 432 >gi|74318224|ref|YP_315964.1| translocation protein TolB [Thiobacillus denitrificans ATCC 25259] gi|119371065|sp|Q3SGT4|TOLB_THIDA RecName: Full=Protein tolB; Flags: Precursor gi|74057719|gb|AAZ98159.1| probable tolB-related transport protein [Thiobacillus denitrificans ATCC 25259] Length = 427 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 113/434 (26%), Positives = 217/434 (50%), Gaps = 14/434 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV-SIDELGGKVSEVVSK 71 ++ L L+ +G + HA +++ + ++IA F + + ++++V+ Sbjct: 6 LRALLVFSLLCLGLSATRAAHAAMEIEVVGGAANKIAIAMVPFQTAAGQPSPPLTQIVAD 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F++ Q + S + W + GA+ +V G+V+ G R V FRL Sbjct: 66 DLARSGQFSMTDVTGAAQPV--EPSQVDYAAWRTKGAEAMVIGQVVALGGGRFEVRFRLL 123 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV Q+ G + + A WR H I+D +Y+ +TG G F+SRI +V + + Sbjct: 124 DVVKGTQLAGYSYKITAAQWRATGHRIADVVYEKLTGIPGAFSSRIAYVQKQG----KRY 179 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D DG N R + S + ++ P FSP+ ++AY +++D+ + VY+ + + Sbjct: 180 ELRVADADGQNPRTIVRSLEPLI-SPMFSPDGTRLAYVSFEDKKPV-VYVQSLQQGG-RR 236 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 ++ F+ AP +S +G++ + + +D A IY +++ + RL + I+ +SP Sbjct: 237 KVAAFKGSNSAPAWSPDGRQLAVVLTRDGASQIYLINVDGSGLTRLMRSGDIDTEPVFSP 296 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D + F SDR G Q+Y + +G D KR+S + + P SP G +A+ G +F Sbjct: 297 DGQTLYFTSDRGGSPQIYRVAKSGGDAKRVSFEGSYNV-SPTISPDGRYLAYISRDGGRF 355 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + + Q R+L E + +AP+++P+G++++++ + G L ++ L+G+ + Sbjct: 356 RVVLQELASGQTRVLTETTRDEAPSFAPNGQAVLYATVQGGRG--VLGTVTLDGKTRARL 413 Query: 432 NTPA-YASDPQWVG 444 + A +P W Sbjct: 414 SESGVDAREPAWGP 427 >gi|62179322|ref|YP_215739.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484379|sp|Q57RK3|TOLB_SALCH RecName: Full=Protein tolB; Flags: Precursor gi|62126955|gb|AAX64658.1| tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiprotein peptidoglycan recycling complex (Two domains) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713793|gb|EFZ05364.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 430 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 96/428 (22%), Positives = 187/428 (43%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + K+ + +V+ DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ + + W++LG +V G+V + ++L D + Sbjct: 71 LDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNIAYQLVDTGGAPGTVL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + + R HT SD++++ +TG KG F +RI +V ++ G L V D D Sbjct: 130 AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N +++ Q L P +SP+ K+AY T++ ++ T + + +++ +F Sbjct: 189 GYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGSVRQVASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F Sbjct: 246 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y M NG +RI+ + + D S G + + + I Sbjct: 306 SDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNNGQQHIAKQDLV 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 SPAWSPYL 430 >gi|268590336|ref|ZP_06124557.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rettgeri DSM 1131] gi|291314245|gb|EFE54698.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rettgeri DSM 1131] Length = 430 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 99/432 (22%), Positives = 191/432 (44%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +++ + T A +++ + P+ + K+ +V ++V DL+ S Sbjct: 7 VVLGFLMLWATVAQAEIRIEITEGVNSAQPIGVVPFKWSGAGAPPQEVGQIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ + + W +LG +V G+V V ++L DV Sbjct: 67 KFNPIEPSRMPQQPGTASEVI-PEAWTALGINAVVVGQVQPAADGSFVVSYQLVDVAANP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ + R AHT SD++++ +TG +G F +RI ++ + G L V Sbjct: 126 GAVLSQNQYKVTKEWLRYAAHTASDEVFEKLTGIRGAFRTRIAYIVVN-KGGQYPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ + L P +SP+ +K+AY T++ ++ T A +++ + Sbjct: 185 SDYDGFN-QFTVHRSPEPLMSPAWSPDGEKLAYVTFESGS--SALVIQTLSTGAVRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ PDS Sbjct: 242 FPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V+ SD+ G+ Q+Y M NG +R+S + + D SP G + G + + Sbjct: 302 LVYTSDQAGRPQIYKMNINGGSPERVSWEGTQNQ-DADVSPDGTFLVMVSSGGGQQHVAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + L + + P+ +P+G +I+S + T +L + +GR + L T Sbjct: 361 QDLATNNVEFLTKTFLDETPSIAPNGTMVIYSSSQGLGTILQL--VSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|85058864|ref|YP_454566.1| translocation protein TolB [Sodalis glossinidius str. 'morsitans'] gi|119371063|sp|Q2NUL4|TOLB_SODGM RecName: Full=Protein tolB; Flags: Precursor gi|84779384|dbj|BAE74161.1| colicin import protein TolB [Sodalis glossinidius str. 'morsitans'] Length = 430 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/445 (23%), Positives = 189/445 (42%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + LL + + +HA V++ P+ + K+ Sbjct: 1 MKQAFRVALGFFLL-------WASVLHAEVRIEITQGVDTARPIGVVPFKWAGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN + Q+ + W +LG +V G+V Sbjct: 54 IGGIVAADLRNSGKFNPLDTSRLPQQPATASEV-TPPAWTALGIDAVVVGQVQPSAAGSY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + +F + R AHT SD+ ++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGNPGSILAQNQFKVARKWLRYAAHTASDETFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G + L V D DG N + Q L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGQYRYELRVADYDGFN-QTPVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T A +++ +F AP FS +G + + K M++Y +DL S ++T Sbjct: 229 QTLDSGAIRQVASFPQHNGAPAFSPDGSKLAFVLSKTGNMNLYVMDLGSGQVRQVTEGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + + SD+ G+ Q+Y NG +R+S + + V SP G + Sbjct: 289 NNTEPSWFPDSQTLAYTSDQGGRPQVYKTNINGGTPQRLSWEGSQNQNADV-SPDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I + + ++L + + P+ +P+G +I+S + GS L + Sbjct: 348 MVSTNNGAQHIAKLDLATNAVQVLTDTFLDETPSVAPNGTMVIYSATQG--LGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T +P W ++ Sbjct: 406 TDGRFKARLPATDGQVKNPAWSPYL 430 >gi|254521375|ref|ZP_05133430.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas sp. SKA14] gi|219718966|gb|EED37491.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas sp. SKA14] Length = 439 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 113/440 (25%), Positives = 211/440 (47%), Gaps = 13/440 (2%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYS--PVSIAFTKFVSIDELGG-KVSEV 68 M L + L+ F + + + N S P++I + V+ V Sbjct: 3 KMPRWLAVFAALLLPFAAVAQQKGLDIDIIGGNASALPITIVPMPYQGSAAAPQTDVAGV 62 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V DL+RS F + + +K I +F W +L +V GRV+ G RVE+ Sbjct: 63 VRADLERSGQFRTLPEAQIVEKPVRGGDI-QFATWRALKQNYIVVGRVLDAGAGAYRVEY 121 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV ++++G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 122 ELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKGDA 181 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 ++ +L V D DG N + + S + L P +SP+ K+AY +++ + +Y+ + Sbjct: 182 MRYALMVADSDGYNPQTIVRSAEP-LLSPSWSPDGSKLAYVSFERGNSA-IYIQNIATG- 238 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ + Sbjct: 239 ARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNHFAIDTEPT 298 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++PD S + F SDR G+ Q+Y + + G +R++ + P S G IA + SG Sbjct: 299 WAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVTFQGNYNA-KPTVSYDGKKIAVAQGSG 357 Query: 369 EKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I +M R L S ++P+++P+ ++++ ++ G LY++ + R Sbjct: 358 NSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADAR 415 Query: 427 -NETLINTPAYASDPQWVGF 445 + L+ +P W + Sbjct: 416 VRQRLVLADGDVREPAWSPY 435 >gi|322670511|gb|EFY66644.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679677|gb|EFY75718.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684847|gb|EFY80846.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] Length = 431 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 189/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +H+ V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHSEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVVVGQVTPNPDGSYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 296 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|322833831|ref|YP_004213858.1| Tol-Pal system beta propeller repeat protein TolB [Rahnella sp. Y9602] gi|321169032|gb|ADW74731.1| Tol-Pal system beta propeller repeat protein TolB [Rahnella sp. Y9602] Length = 430 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 101/428 (23%), Positives = 190/428 (44%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + + + +HA V++ P+ + K+ V +V+ DL+ S FN Sbjct: 11 LLMMWASVVHAEVRIEITQGVDTARPIGVVPFKWAGPGTPPEDVGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 I Q+ T+ + W +LG +V G+V V ++L D + Sbjct: 71 IDASRMPQQPTSAAEV-TPAAWTALGIDAVVIGQVQPAADGSYVVSYQLVDTSGAPGTVL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 ++ + R AHT SD++++ +TG KG F +RI ++ ++ G L V D D Sbjct: 130 AQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYIVQTN-GGKFPYELRVADYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N +++ + L P +SP+ K+AY T++ ++ T + A K+I +F Sbjct: 189 GYN-QFVVHRSPEPLMSPAWSPDGSKLAYVTFESGR--SALVVQTLANGAIKQIASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ KD ++++Y ++L S ++TN N ++ PDS + F Sbjct: 246 NGAPAFSPDGSKLAFALSKDGSLNLYVMNLSSGQISQVTNGRSNNTEPTWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +R++ + + D S G + + I + Sbjct: 306 SDQGGRPQVYKVNINGGAPQRLTWEGSQNQ-DSDVSTDGKFLVMVSSASGTQHIAKLDLA 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 + L + + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 TGAVQTLTDTFLDETPSLAPNGTMVIYSSSQG--LGSVLQLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 FPAWSPYL 430 >gi|270263785|ref|ZP_06192054.1| protein TolB, precursor [Serratia odorifera 4Rx13] gi|270042669|gb|EFA15764.1| protein TolB, precursor [Serratia odorifera 4Rx13] Length = 430 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 96/445 (21%), Positives = 194/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K+ Sbjct: 1 MKQAFRVALGFLIL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++V DL+ S FN I Q+ T+ + W +LG +V G+V Sbjct: 54 IGKIVGADLRNSGKFNPIDVARMPQQPTSASEV-TPAAWTALGIDAVVVGQVQPGADGGY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 LISYQLVDTSGSPGTVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPYELRVADYDGYN-QFVVHRSPEPLMSPAWSPDGSKLAYVTFESGR--SALVV 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A ++I +F AP FS +G R ++ K ++++Y ++L S ++T+ Sbjct: 229 QTLANGAIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQITQITDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N ++ PD + + SD+ G+ Q+Y + ++G +R++ + + V S G + Sbjct: 289 NNTEPTWFPDGQSLAYTSDQGGRPQIYKVSASGGASQRLTWEGSQNQDSEVSS-DGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 MVSSNSGAQHIAKQDLGSGAVQVLTGTFLDETPSIAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|319762343|ref|YP_004126280.1| tol-pal system beta propeller repeat protein tolb [Alicycliphilus denitrificans BC] gi|330825736|ref|YP_004389039.1| Tol-Pal system beta propeller repeat-containing protein TolB [Alicycliphilus denitrificans K601] gi|317116904|gb|ADU99392.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus denitrificans BC] gi|329311108|gb|AEB85523.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus denitrificans K601] Length = 440 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 112/426 (26%), Positives = 195/426 (45%), Gaps = 14/426 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 + + A +V + + IA + K+S +V DL+RS F Sbjct: 25 VAALAAGSTLPALAQFRVEITGVGLTQLPIAIAPLRGEAQSPQKISAIVQADLERSGRFT 84 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + + S P W A L TG V + R V FRLWDV + + Sbjct: 85 GVDATGV---ALDETSRPDLSQWRQRKADALSTGSVTRLADGRFDVRFRLWDVVKGQDLG 141 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G+ F + A R +AH I+D IY+ +TGE+G F++RI +V++ + SL V D DG Sbjct: 142 GQSFTVTQADLRLVAHRIADFIYEKLTGERGVFSTRIAYVTKVGA----RYSLWVADADG 197 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N + S + I+ P +SP+ ++AY +++ + VY+ D R + I NFR Sbjct: 198 ENAQSALSSPEPII-SPAWSPSGAQLAYVSFESRKPV-VYVHDVATGR-RRLIANFRGSN 254 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 AP +S +G+ +++ +D +Y++D RL + I+ ++S D I F S Sbjct: 255 SAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGIDTEPAFSSDGRSIYFVS 314 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G Q+Y + + G + +R++ + + P SP G +A+ G F + VM Sbjct: 315 DRGGSPQIYRVAAGGGNAERVTFNGAYN-ISPAISPDGQWLAYISRVGGAFKLHVMDLRS 373 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASD 439 L + S ++P+++P+ R ++++ ++ G L + L+G+ L + Sbjct: 374 GSVTALTDSSADESPSFAPNSRLILYATQQQGR--EALMTTTLDGKIKARLAGQGGDIRE 431 Query: 440 PQWVGF 445 P W F Sbjct: 432 PDWGPF 437 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 11/185 (5%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + ++ D + ++ IS ++SP +Q+ + S K +Y Sbjct: 176 TRIAYVTKVGARYSLWVADADGENAQSALSSPEPIISPAWSPSGAQLAYVSFESRKPVVY 235 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V ++R+ + S P WSP G +A T + + +G + R L++ Sbjct: 236 VHDVATG-RRRLIANFRGSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQS 294 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQ 441 S + P +S GRS+ F + G ++Y + G N + +PA + D Q Sbjct: 295 SGIDTEPAFSSDGRSIYFVSDRGGS--PQIYRVAAGGGNAERVTFNGAYNISPAISPDGQ 352 Query: 442 WVGFM 446 W+ ++ Sbjct: 353 WLAYI 357 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 8/140 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I FVS+ S + + G N +T P SP+ Q +AY + Sbjct: 309 SIYFVSDRGGSP----QIYRVAAGGGNAERVT-FNGAYNISPAISPDGQWLAYIS-RVGG 362 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++++MD R S +P F+ N + L + Q+ + + L Sbjct: 363 AFKLHVMDLRSGSVTAL--TDSSADESPSFAPNSRLILYATQQQGREALMTTTLDGKIKA 420 Query: 296 RLTNTLFINISASYSPDSSQ 315 RL + P Q Sbjct: 421 RLAGQGGDIREPDWGPFQKQ 440 >gi|326423958|ref|NP_761028.2| Tol-Pal system beta propeller repeat-containing protein TolB [Vibrio vulnificus CMCP6] gi|319999336|gb|AAO10555.2| Tol-Pal system beta propeller repeat protein TolB [Vibrio vulnificus CMCP6] Length = 449 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 108/438 (24%), Positives = 193/438 (44%), Gaps = 31/438 (7%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +A +++ + P++I K+ L +S VV+ DLQRS F+ + Q Sbjct: 20 ANAALELIITDGIDSARPIAIVPFKWQGTKALPVDISSVVASDLQRSGKFSPVPTSKMPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ----------- 138 N I F W +LG L+TG V + K + ++L DV + Sbjct: 80 TPYNESEI-NFDAWTNLGVDTLLTGSVTQNEKGEYVINYQLVDVVRGQLTSGQSRALEDG 138 Query: 139 ---------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 + K + R+ AH ISD IY+ +TGE+G F +RI +V + Sbjct: 139 QLVLSKDHVLFNKVATITAPRMREYAHRISDLIYEQLTGERGAFLTRIAYVVVN-DKDKF 197 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N R + S+ Q L P +SP+ +++AY ++ + +++++ Sbjct: 198 PYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGRRLAYVSFQNGQA-EIFVLNIYTGEH 255 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ +F APRFS +GK+ I + K ++ IY++DLQ+ ++T N + Sbjct: 256 -EKLTSFPRHNGAPRFSPDGKKLAIVLSKTGSLQIYTLDLQTRQLTQITRDRSNNTEPFW 314 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD ++F SDR GK Q+Y + + R++ + +P G + S Sbjct: 315 HPDGKSLIFTSDRGGKPQIYRVNLSDGSTSRLTWQGSQNLGGQ-ITPDGRFLIMVNRSDS 373 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 F + + ++L + ++P+ +P+G +I+S D L + ++GR + Sbjct: 374 GFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIYDKKN--VLSMVSIDGRFKA 431 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W F+ Sbjct: 432 RLPATNGRVRAPAWSPFL 449 >gi|190575562|ref|YP_001973407.1| translocation protein TolB [Stenotrophomonas maltophilia K279a] gi|190013484|emb|CAQ47119.1| putative tolB protein precursor [Stenotrophomonas maltophilia K279a] Length = 439 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 113/440 (25%), Positives = 211/440 (47%), Gaps = 13/440 (2%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYS--PVSIAFTKFVSIDELGG-KVSEV 68 M L + L+ F + + + N S P++I + V+ V Sbjct: 3 KMPRWLAVFAALLLPFAAVAQQKGLDIDIIGGNASALPITIVPMPYQGSSAAPQTDVAGV 62 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V DL+RS F + + +K I +F W +L +V GRV+ G RVE+ Sbjct: 63 VRADLERSGQFRTLPEAQIVEKPVRGGDI-QFATWRALKQNYIVVGRVLDAGAGAYRVEY 121 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV ++++G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 122 ELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKGDA 181 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 ++ +L V D DG N + + S + L P +SP+ K+AY +++ + +Y+ + Sbjct: 182 MRYALMVADSDGFNPQTIVRSAEP-LLSPSWSPDGSKLAYVSFERGNSA-IYIQNIGTG- 238 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ + Sbjct: 239 ARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNHFAIDTEPT 298 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++PD S + F SDR G+ Q+Y + + G +R++ + P S G IA + SG Sbjct: 299 WAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVTFQGNYNA-KPSVSYDGKKIAVAQGSG 357 Query: 369 EKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I +M R L S ++P+++P+ ++++ ++ G LY++ + R Sbjct: 358 NSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADAR 415 Query: 427 -NETLINTPAYASDPQWVGF 445 + L+ +P W + Sbjct: 416 VRQRLVLADGDVREPAWSPY 435 >gi|152969308|ref|YP_001334417.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954157|gb|ABR76187.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 418 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 191/426 (44%), Gaps = 13/426 (3%) Query: 26 GFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS 83 + +HA V++ + P+ + ++ V +V+ DL+ S FN + Sbjct: 1 MLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNPLD 60 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIG 141 + Q+ T+ + + W++LG +V G+V + +V ++L D + Sbjct: 61 RSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVTQNPDGSYQVAYQLVDTGGAPGTTLAQ 119 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 F + R AH SD +++ +TG KG F +RI +V + G L V D DG Sbjct: 120 GSFKVTKQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQYPYELRVSDYDGY 178 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N ++L Q L P +SP+ K+AY T++ ++ T + + ++I +F Sbjct: 179 N-QFLVHRSSQPLMSPAWSPDGSKLAYVTFESGR--SALVVQTLANASVRQIASFPQHNG 235 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + ++ K ++++Y +DL S ++TN N S+ PDS + F SD Sbjct: 236 APAFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFTSD 295 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + G+ Q+Y + NG +RI+ + + D S G + +G + I + Sbjct: 296 QAGRPQVYKVNINGGTPQRITWEGSQNQ-DADVSADGKTMVMVSSAGGQQHIAKQDLETG 354 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 ++L + P+ +P+G +I+S + GS L + +GR + L T P Sbjct: 355 GVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKSP 412 Query: 441 QWVGFM 446 W ++ Sbjct: 413 AWSPYL 418 >gi|308049998|ref|YP_003913564.1| Tol-Pal system beta propeller repeat protein TolB [Ferrimonas balearica DSM 9799] gi|307632188|gb|ADN76490.1| Tol-Pal system beta propeller repeat protein TolB [Ferrimonas balearica DSM 9799] Length = 454 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 213/449 (47%), Gaps = 29/449 (6%) Query: 21 LVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 + + A +++ PV++ + + ++S+VV+ DL RS Sbjct: 12 ALAMVLLVSMPARATLEIVITEGVNAARPVAVVPFVWEGPGPMPEQISDVVTSDLARSGS 71 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 FN + Q + ++ + W + GA+ +V G+V ++G D+ +V F L D+ + Sbjct: 72 FNPLPVTQLPQTAISNEAQMDLEAWVNTGAEAVVVGKVSQQGADQFKVVFELVDLIRAQA 131 Query: 139 --------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 I G++ S A +R+ H ISD +Y+++TG KG F ++I Sbjct: 132 TGGDTQGFDGNGLVKTNDHIIEGRETVISKAQFRQYGHRISDLVYEALTGVKGAFLTKIA 191 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V+ + K L V D DG N L SR+ L P +SP+ +K+AY ++++ Sbjct: 192 YVTVDESAAPFKFQLRVADYDGYNETVLLRSREP-LMSPSWSPDGRKLAYVSFENRRS-E 249 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y+ D + +R+ +F + +P +S +GK+ +++ KD + +IY++DL + A +R+T Sbjct: 250 IYVQDLYT-QQRERVTSFAGINGSPSWSPDGKQLAMTLSKDGSSEIYTLDLATRALKRIT 308 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N I+ +++PD +VF S+R G+ Q+Y + + +R++ E + +P G Sbjct: 309 NHYAIDTEPTWAPDGKSLVFTSERGGRPQIYRVYLDSGRIQRLTFQGEWNLGG-SMTPDG 367 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + KF I M+ +L E ++P+ +P+G +I+ +G L Sbjct: 368 RYLVMVNRTNGKFNIARMELSTGYMDVLTETYLDESPSVAPNGSMIIYGTTHNGRQ--VL 425 Query: 419 YSIDLNGRNE-TLINTPAYASDPQWVGFM 446 ++ ++GR + L P W F+ Sbjct: 426 AAVSMDGRFKARLPVQVGNVKAPAWSPFL 454 >gi|213969191|ref|ZP_03397330.1| translocation protein TolB [Pseudomonas syringae pv. tomato T1] gi|213926189|gb|EEB59745.1| translocation protein TolB [Pseudomonas syringae pv. tomato T1] Length = 416 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 105/416 (25%), Positives = 203/416 (48%), Gaps = 12/416 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ + + L ++E+VS DL+ S + I + + T Sbjct: 9 ILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVSNDLRNSGYYAPIPKQNMISLPTQAS 68 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + F+DW +LGAQ ++ G + G RL++++ L++V +Q++ + R +A Sbjct: 69 EVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYALFNVATEQQVLTGNVSGTNDQLRDMA 126 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D ++ +TG KG F++R+L+V+ S + +L D DGA L SR+ I Sbjct: 127 HYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTRYTLQRSDYDGARAVTLLQSREPI- 185 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ R ++I NF + AP +S +G + Sbjct: 186 LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR-REQITNFEGLNGAPAWSPDGSKLAF 243 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD +IY ++L S R+TN I+ + D S + F SDR GK Q+Y N Sbjct: 244 VLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFGKDGSTLYFTSDRGGKPQIYKTNIN 303 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSNL 392 G +R++ + +P S + F + V ++L + + Sbjct: 304 GGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDGFTNFKVAVQDLARGSVKILTDSNLD 362 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 ++PT +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 363 ESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 416 >gi|156934765|ref|YP_001438681.1| translocation protein TolB [Cronobacter sakazakii ATCC BAA-894] gi|156533019|gb|ABU77845.1| hypothetical protein ESA_02605 [Cronobacter sakazakii ATCC BAA-894] Length = 431 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 190/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRLAFSFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V G V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPAAWSALGIDAVVVGQVTPNGDGSYTVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + NG +R++ + + D S G + +G Sbjct: 296 WYPDSQTLAYTSDQAGRPQVYKVNINGGAPQRVTWEGSQNQ-DADISSDGKFMVMVSSNG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + + L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GAQNIAKLDLATGGVQTLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|157369522|ref|YP_001477511.1| translocation protein TolB [Serratia proteamaculans 568] gi|166988079|sp|A8GB93|TOLB_SERP5 RecName: Full=Protein tolB; Flags: Precursor gi|157321286|gb|ABV40383.1| Tol-Pal system beta propeller repeat TolB [Serratia proteamaculans 568] Length = 430 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 96/445 (21%), Positives = 192/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K+ Sbjct: 1 MKQAFRVALGFLIL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++V DL+ S FN I Q+ T + W +LG +V G+V Sbjct: 54 IGKIVGADLRNSGKFNPIDVARMPQQPTTASEV-TPAAWTALGIDAVVVGQVQPGADGGY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + ++L D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 LISYQLVDTSGSPGTVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N ++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPYELRVADYDGYN-QFTVHRSPEPLMSPAWSPDGSKLAYVTFESGR--SALVV 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A ++I +F AP FS +G R ++ K ++++Y ++L S ++T+ Sbjct: 229 QTLANGAIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQITQITDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N ++ PD + + SD+ G+ Q+Y + ++G +R++ + + V S G + Sbjct: 289 NNTEPTWFPDGQSLAYTSDQGGRPQIYKVSASGGASQRLTWEGSQNQDSEVSS-DGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 MVSSNSGAQHIAKQDLGSGAVQVLTGTFLDETPSIAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|37525407|ref|NP_928751.1| translocation protein TolB [Photorhabdus luminescens subsp. laumondii TTO1] gi|67461995|sp|Q7N6T6|TOLB_PHOLL RecName: Full=Protein tolB; Flags: Precursor gi|36784835|emb|CAE13748.1| TolB protein precursor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 430 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 190/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +++ I + T HA V++ + P+ + K+ ++ +V DL+ S Sbjct: 7 VVLSILMLWVTVAHAEVRIEITQGVDSARPIGVVPFKWTGAGNAPEEIGAIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR- 136 FN I Q+ T + W++LG +V G++ + ++L D Sbjct: 67 KFNPIDISRMPQQPTTTSEV-TPAAWSALGIDAVVVGQIQPSADGGFLISYQLVDTASAP 125 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++ + F W R AHT SD +++ +TG KG F +R+ ++ ++ G L V Sbjct: 126 GTVLAQDQFKVTKQWLRYAAHTASDQVFEKLTGIKGAFRTRLAYIVKTN-GGKYPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ + L P +SP+ K+AY T++ ++ T +++ + Sbjct: 185 SDYDGYN-QFTVHRSPEPLMSPAWSPDGAKLAYVTFESGR--SALVIQTLASGEVRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ PD+ Sbjct: 242 FPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSAQIRQITDGRSNNTEPSWMPDNQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V+ SD+ G+ QLY NG +R++ + + D S G+ + K I Sbjct: 302 LVYTSDQGGRPQLYKTDINGGAPQRLTWEGTQNQ-DADVSADGNFVMMVSSESGKQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 ++L + + P+ +P+G +I+S + G+ L + +GR + L T Sbjct: 361 QDLATGAVQILTDTFLDETPSIAPNGTMVIYSSTQG--LGTVLQLVSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|237746665|ref|ZP_04577145.1| TolB protein [Oxalobacter formigenes HOxBLS] gi|229378016|gb|EEO28107.1| TolB protein [Oxalobacter formigenes HOxBLS] Length = 429 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 108/432 (25%), Positives = 202/432 (46%), Gaps = 17/432 (3%) Query: 18 CLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L++ F A + + + + + + F + KV++++ DL R Sbjct: 11 SFLVLGFSLFLAGKALAQEHLDIQISGVGATQIPVTIAGFANETVAPQKVTDIIRADLAR 70 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 + +F L+ D+ + + W + GA LV G V K ++ V +RL+D+ Sbjct: 71 TGLFRLVGTDAIL----PESAFIDYPKWKANGADALVVGSVEKTADGKIDVRYRLFDLGK 126 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 Q+ + R AH I+DDIY+ +TG KG F +RI +V ++ + L + Sbjct: 127 ASQLSALSMVAPAPMTRVTAHKIADDIYEKLTGIKGMFATRIAYVVKAGN----EYRLEI 182 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG + S++ I+ P +SP+ KVAY +++ + + VY+ + + RA + N Sbjct: 183 ADSDGEGRQLALRSKEPII-SPSWSPDGTKVAYVSFEAKKPV-VYVQNL-VTRARTVVAN 239 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 ++ AP +S +G + +++ K+ IY+V+ + +LT T IN +S D Sbjct: 240 YKGNNSAPSWSPDGTKLAVALSKNGYTQIYTVNANGGSLRQLTQTRSINTEPQFSADGKW 299 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I F SDR G Q+Y + NG + +R++ + P SP G +A+ F + + Sbjct: 300 IYFTSDRSGGPQIYKIGVNGGNAQRVTFGSNYN-ISPRVSPDGKSLAYISRRNGGFQLYL 358 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTP 434 M + QE L + + ++P++SP+G+ ++++ L + ++GR + L Sbjct: 359 MDLENGQEMRLSDTARDESPSFSPNGQFIMYAT--GSGRRGVLSVVSVDGRVRQRLTMKA 416 Query: 435 AYASDPQWVGFM 446 A +P W FM Sbjct: 417 ADVREPSWGPFM 428 >gi|238793897|ref|ZP_04637517.1| hypothetical protein yinte0001_25120 [Yersinia intermedia ATCC 29909] gi|238726800|gb|EEQ18334.1| hypothetical protein yinte0001_25120 [Yersinia intermedia ATCC 29909] Length = 413 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 100/420 (23%), Positives = 192/420 (45%), Gaps = 13/420 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V DL+ S FN I Q Sbjct: 2 LHAEVRIEITQGVDSARPIGVVSFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQ 61 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV--KDRKQIIGKKFFSS 147 + + + W +LG +V G+V V ++L D + ++ + Sbjct: 62 QPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVT 120 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 121 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 178 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +SP+ K+AY T++ ++ T + A +++ +F AP FS Sbjct: 179 HRSPEPLMSPAWSPDGSKIAYVTFESGK--SALVIQTLANGAIRQVASFPRHNGAPSFSP 236 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y +DL S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 237 DGTKLAFALSKSGSLNLYVMDLGSGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 296 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + NG +RI+ + + V SP G +A +G I + ++L Sbjct: 297 VYKVNINGGAPQRITWEGSQNQNADV-SPDGKFLALVSSNGGAQHIAKQDLETGAVQVLT 355 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + P+ +P+G +I+S + G+ L + +GR + L T P W ++ Sbjct: 356 DTFLDETPSIAPNGTMVIYSSTQG--LGAVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 413 >gi|213051767|ref|ZP_03344645.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427709|ref|ZP_03360459.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213857527|ref|ZP_03384498.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827213|ref|ZP_06545933.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 431 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 188/439 (42%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG ++ G V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + + Sbjct: 296 WFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKSPAWSPYL 431 >gi|109899246|ref|YP_662501.1| TolB-like [Pseudoalteromonas atlantica T6c] gi|123360547|sp|Q15RP1|TOLB_PSEA6 RecName: Full=Protein tolB; Flags: Precursor gi|109701527|gb|ABG41447.1| TolB-like protein [Pseudoalteromonas atlantica T6c] Length = 451 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 114/455 (25%), Positives = 207/455 (45%), Gaps = 31/455 (6%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 L +L + S A +++ + P++I K+ ++ +SEVVS DL Sbjct: 3 RLTRVLTFLSVVLTASSQASLEIVITEGIDSARPIAIVPFKWNGPGQMPESLSEVVSGDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F+ I + N + + + W + G + ++ G V EG DR RV F L D Sbjct: 63 LRSGKFSPIDSTDMPGQPHNDNEL-DYSAWAATGVEAILVGSVTPEGPDRYRVNFTLVDA 121 Query: 134 KDRK--------------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 + + ++ + +R+ AH ISD +Y+ +TGEKG F Sbjct: 122 IRGQITGGNARALSGGKLTNSNDHILDSRQTVITGQGFRQYAHRISDVVYEKLTGEKGAF 181 Query: 174 NSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 +RI +V + L V D DG N L S++ L P +SP+ K+AY T++ Sbjct: 182 MTRIAYVVVRDRKTNEFPYQLVVADYDGVNETMLLRSKEP-LMSPSWSPDGTKLAYVTFE 240 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 ++ ++Y+ D + ++ +F + AP FS NG++ + + KD +IY +D+ S Sbjct: 241 NKRS-QIYIQDLYT-MSRTQMTDFPGINSAPVFSPNGRQLAMVLSKDGNPEIYVMDVASK 298 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ER+T I+ S++PD ++F S+R GK Q+Y + ++ +R++ D E + Sbjct: 299 RLERITRNRAIDTEPSWTPDGKSLIFSSERGGKPQIYRVDLASNNVRRVTFDGEMNLGG- 357 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 +P G + + + I + ++L + ++P+ +P+G +I+S G Sbjct: 358 TITPDGGRMVMVNRTRGNYHIAAQDLENGNIQVLTKTYLDESPSIAPNGSMIIYSTLHQG 417 Query: 413 DTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + L+GR + L + P W F+ Sbjct: 418 KQVLSL--VSLDGRFKARLPASDGQVKSPSWSPFL 450 >gi|257095752|ref|YP_003169393.1| translocation protein TolB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048276|gb|ACV37464.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 430 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 110/416 (26%), Positives = 196/416 (47%), Gaps = 13/416 (3%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 S A + + A + + +A +F V+ VV DL+RS +F +I Sbjct: 25 SAQAQLTIEITGAGANRIPVAIAEFGGEASAARIVTSVVRADLERSGLFKMIDTSGA--- 81 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 S P + +W S GA L G + + R FRL+DV + G F +S Sbjct: 82 AMTEASTPAYDEWKSRGADALAAGSIGEGADGRKEARFRLYDVNKAGVLGGSAFVTSKPM 141 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R H I+D IY+ +TGE G F++R+ +V + S + L + D DG N + S+ Sbjct: 142 LRATGHRIADIIYEKLTGEPGIFSTRVAYVVRASAS---RYELHIADADGQNAQVALISK 198 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + I+ P +SP+ ++AY +++++ + + + NF+ AP +S +G+ Sbjct: 199 EPII-SPSWSPDGGRLAYVSFENKKP--IVYVHSLASGKRIVAANFKGSNSAPAWSPDGR 255 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + + KD I++V+ + +RLT IN ++SPD + F SDR G Q+Y Sbjct: 256 KLAVVLSKDGGSQIFTVNADGSGVQRLTTASAINTEPNFSPDGQYVYFTSDRGGSPQIYR 315 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + G D +R+S + + P SP G +AF F + VM Q ++L + Sbjct: 316 VGVGGGDAQRVSFEGSYNVT-PRLSPDGKSMAFISRRDGSFRLSVMDLASKQVQVLTDSH 374 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P++SP+GR ++ + ++ G L ++ ++GR + L + +P W F Sbjct: 375 KDESPSFSPNGRMILIATEQGGRG--VLSAVSIDGRIKQRLSISAGDVREPAWSPF 428 >gi|91787860|ref|YP_548812.1| translocation protein TolB [Polaromonas sp. JS666] gi|118574592|sp|Q12C28|TOLB_POLSJ RecName: Full=Protein tolB; Flags: Precursor gi|91697085|gb|ABE43914.1| TolB-like protein [Polaromonas sp. JS666] Length = 426 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 113/429 (26%), Positives = 204/429 (47%), Gaps = 16/429 (3%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 ++ +L G P A +V + + + IA F + K+ +V DL+RS Sbjct: 11 TVMSLLAAGLSP--AFAQFRVEVSGVGLTQLPIAIASFRGEVQAPQKIGNIVRADLERSG 68 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F + + + ++ P W GA +VTG V R V RLWD+ + Sbjct: 69 MFRPVDTAGI---VADENTRPDLAIWRQKGADAMVTGSVSPLADGRFDVRLRLWDIVRGQ 125 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + G+ + + A R AH ISD +Y+ +TGEKG F++RI +V+++ + +L V D Sbjct: 126 DLGGQSYTVAQADLRLSAHRISDFVYEKLTGEKGIFSTRIAYVTKT----AQRFNLWVAD 181 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + S + I+ P +SPN ++AY +++ + +Y D + + + NFR Sbjct: 182 SDGEGAQSALTSPEPII-SPSWSPNGSQLAYVSFESRKPV-IYAHDVATGK-RRLLANFR 238 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP +S +GK+ + ++ +D IY++ L +RLT + I+ +YSPD I Sbjct: 239 GSNSAPAWSPDGKQLVATLSRDGGSQIYALGLSGGDPKRLTQSSSIDTEPAYSPDGRYIY 298 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G Q+Y M G + +R++ + P SP G +A+ G F + VM+ Sbjct: 299 FVSDRGGAPQIYRMSPGGGNPERVTFTGGYN-ISPAISPDGRWLAYVSRVGGAFKLHVME 357 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + + + ++P+++P+ R ++++ ++ G L + L+G+ L Sbjct: 358 LASGTATPITDTTADESPSFAPNSRLIVYATQQQGR--EALMTTTLDGKIKARLSGAGGD 415 Query: 437 ASDPQWVGF 445 +P W F Sbjct: 416 IREPDWGPF 424 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%) Query: 270 KRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 R + + +++ D A LT+ I IS S+SP+ SQ+ + S K + Sbjct: 163 TRIAYVTKTAQRFNLWVADSDGEGAQSALTSPEPI-ISPSWSPNGSQLAYVSFESRKPVI 221 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y +R+ + S P WSP G + T I + G + L + Sbjct: 222 YAHDVATGK-RRLLANFRGSNSAPAWSPDGKQLVATLSRDGGSQIYALGLSGGDPKRLTQ 280 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDP 440 S++ P +SP GR + F + G ++Y + G N + +PA + D Sbjct: 281 SSSIDTEPAYSPDGRYIYFVSDRGG--APQIYRMSPGGGNPERVTFTGGYNISPAISPDG 338 Query: 441 QWVGFM 446 +W+ ++ Sbjct: 339 RWLAYV 344 >gi|37680459|ref|NP_935068.1| translocation protein TolB [Vibrio vulnificus YJ016] gi|320155882|ref|YP_004188261.1| TolB protein , periplasmic protein involved in the tonb-independent uptake of group A colicins [Vibrio vulnificus MO6-24/O] gi|67461993|sp|Q7MJ87|TOLB_VIBVY RecName: Full=Protein tolB; Flags: Precursor gi|37199207|dbj|BAC95039.1| tol biopolymer transport system periplasmic component, TolB [Vibrio vulnificus YJ016] gi|319931194|gb|ADV86058.1| TolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Vibrio vulnificus MO6-24/O] Length = 449 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 108/438 (24%), Positives = 193/438 (44%), Gaps = 31/438 (7%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +A +++ + P++I K+ L +S VV+ DLQRS F+ + Q Sbjct: 20 ANAALELIITDGIDSARPIAIVPFKWQGTKALPVDISSVVASDLQRSGKFSPVPTSKMPQ 79 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ----------- 138 N I F W +LG L+TG V + K + ++L DV + Sbjct: 80 TPYNESEI-NFDAWTNLGVDTLLTGSVTQNEKGEYVINYQLVDVVRGQLTSGQSRALEDG 138 Query: 139 ---------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 + K + R+ AH ISD IY+ +TGE+G F +RI +V + Sbjct: 139 QLVLSKDHVLFNKVATITAPRMREYAHRISDLIYEQLTGERGAFLTRIAYVVVN-DKDKF 197 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N R + S+ Q L P +SP+ +++AY ++ + +++++ Sbjct: 198 PYQLRVADYDGFNERLVLRSK-QPLMSPAWSPDGRQLAYVSFQNGQA-EIFVLNIYTGEH 255 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ +F APRFS +GK+ I + K ++ IY++DLQ+ ++T N + Sbjct: 256 -EKLTSFPRHNGAPRFSPDGKKLAIVLSKTGSLQIYTLDLQTRQLTQITRDRSNNTEPFW 314 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD ++F SDR GK Q+Y + + R++ + +P G + S Sbjct: 315 HPDGKSLIFTSDRGGKPQIYRVNLSDGSTSRLTWQGSQNLGGQ-ITPDGRFLIMVNRSDS 373 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 F + + ++L + ++P+ +P+G +I+S D L + ++GR + Sbjct: 374 GFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGMVIYSSIYDKKN--VLSMVSIDGRFKA 431 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W F+ Sbjct: 432 RLPATNGRVRAPAWSPFL 449 >gi|308186083|ref|YP_003930214.1| Protein tolB precursor [Pantoea vagans C9-1] gi|308056593|gb|ADO08765.1| Protein tolB precursor [Pantoea vagans C9-1] Length = 431 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 195/439 (44%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L + L + +HA V++ P+ + K+ V +V+ Sbjct: 1 MKQALRVTLGFFILLWAAMLHAEVRIEITQGVNTARPIGVVPFKWAGAGAAPEDVGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V +V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPASAQEV-QPAAWSALGIDAVVVGQVASNPDGSYQVSYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R AHT SD+ +Q +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVTKQWLRYAAHTASDETFQKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ KVAY T++ ++ T + Sbjct: 179 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVVQTLSNG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ ++ AP FS +G + ++ K ++++Y +DL S T ++T+ + + + Sbjct: 236 AIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQTRQVTDGRYNSTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G Q+Y + NG +RI+ + + V + G + SG Sbjct: 296 WFPDSQTLAYTSDQAGAPQIYKVGLNGGTPQRITWEGGQNQDADVAT-DGKSMVMISTSG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + L + + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GAQHVAKQDLETGAVQTLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|121594093|ref|YP_985989.1| translocation protein TolB [Acidovorax sp. JS42] gi|120606173|gb|ABM41913.1| TolB, N-terminal domain protein [Acidovorax sp. JS42] Length = 443 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 109/428 (25%), Positives = 197/428 (46%), Gaps = 14/428 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 + + P S A +V + + IA F + K+S +V DL+RS F Sbjct: 28 IAALAASSPLSALAQFRVEITGVGLTQLPIAIAPFRGEPQSPQKISAIVQADLERSGRFL 87 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + + S P W A L +G + + R V FRLWDV + + Sbjct: 88 GVDASGV---ALDESSRPDLSLWRQRKADALTSGSITRLADGRFDVRFRLWDVVKAQDLG 144 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G+ F + A R +AH I+D +Y+ +TGE+G F++RI +V+++ + SL V D DG Sbjct: 145 GQSFVVTQADLRLVAHRIADFVYEKLTGERGIFSTRIAYVTKAGS----RYSLWVADADG 200 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N + S + I+ P ++P ++AY +++ + VY+ D R + I NFR Sbjct: 201 ENAQSALSSPEPII-SPAWAPTGTQLAYVSFESRKPV-VYVHDVATGR-RRLIANFRGSN 257 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 AP +S +G+ +++ +D +Y++D RL + I+ +S D I F S Sbjct: 258 SAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSSGIDTEPVFSSDGRSIYFVS 317 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G Q+Y + ++G +R++ + + P SP G +A+ G + + VM Sbjct: 318 DRGGSPQVYRVAASGGGAERVTFNGSYN-ISPSISPDGQWLAYISRVGGAYKLHVMDLKS 376 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASD 439 + + S + P+++P+ R ++++ ++ G L + L+G+ L + Sbjct: 377 GSVTAVTDTSADENPSFAPNSRLIVYATQQQGR--EALMTTTLDGKIKARLAGQGGDIRE 434 Query: 440 PQWVGFMD 447 P W F + Sbjct: 435 PDWGPFQN 442 >gi|304395719|ref|ZP_07377602.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB] gi|304357013|gb|EFM21377.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB] Length = 431 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 196/439 (44%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L + L + +HA V++ P+ + K+ V +V+ Sbjct: 1 MKQALRVTLGFFILLWAAMLHAEVRIEITQGVNTARPIGVVPFKWAGSGAAPEDVGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ T+ + + W++LG +V G+V +V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVASNPDGSYQVSYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R AHT SD+ +Q +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVTKQWLRYAAHTASDETFQKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ KVAY T++ ++ T + Sbjct: 179 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVVQTLSNG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ ++ AP FS +G + ++ K ++++Y +DL S T ++T+ + + + Sbjct: 236 AIRQVASYPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQTRQVTDGRYNSTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G Q+Y + NG +RI+ + + V + G + +G Sbjct: 296 WFPDSQTLAYTSDQAGAPQIYKVGINGGTPQRITWEGGQNQDADVAT-DGKSMVMISTNG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + L + + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GAQHVAKQDLETGAVQTLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|206575815|ref|YP_002239638.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae 342] gi|290510464|ref|ZP_06549834.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. 1_1_55] gi|226705885|sp|B5XZC1|TOLB_KLEP3 RecName: Full=Protein tolB; Flags: Precursor gi|206564873|gb|ACI06649.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella pneumoniae 342] gi|289777180|gb|EFD85178.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp. 1_1_55] Length = 430 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 104/428 (24%), Positives = 190/428 (44%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + ++ V +V+ DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ T+ + + W++LG +V G+V +V ++L D + Sbjct: 71 LDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVTSNPDGSYQVAYQLVDTGGAPGTTL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 F + R AH SD +++ +TG KG F +RI +V + G L V D D Sbjct: 130 AQGSFKVTKQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N ++L Q L P +SP+ K+AY T++ ++ T + A ++I +F Sbjct: 189 GYN-QFLVHRSSQPLMSPAWSPDGSKLAYVTFESGR--SALVVQTLANGAVRQIASFPQH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++TN N S+ PDS + F Sbjct: 246 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +RI+ + + D S G + +G + I + Sbjct: 306 SDQAGRPQVYKVNINGGTPQRITWEGSQNQ-DADVSADGKTMVMVSSAGGQQHIAKQDLE 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 AGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 SPAWSPYL 430 >gi|17545454|ref|NP_518856.1| translocation protein TolB [Ralstonia solanacearum GMI1000] gi|32699708|sp|Q8Y1F5|TOLB_RALSO RecName: Full=Protein tolB; Flags: Precursor gi|17427746|emb|CAD14265.1| probable protein tolb precursor [Ralstonia solanacearum GMI1000] Length = 432 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 120/449 (26%), Positives = 199/449 (44%), Gaps = 22/449 (4%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 +R L + LL+VL G A + V A S IA F ++ Sbjct: 1 MMRNVWKSGLRRSAWIGLLMVLCVGV----ARAQLYVEIAGAGSSQYPIAIANFQGESQI 56 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 ++ +V DL S F+ + + P W S GA V G V + G Sbjct: 57 PQDITAIVRADLVHSGRFSNVDVAGA---VVPDSPAPDLGAWKSRGAAAFVGGTVTRNG- 112 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 DR + FRL+D + + G R AH I+D IYQ + G++G F +R+ +VS Sbjct: 113 DRYEIRFRLYDTAKGESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSYVS 172 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + L + D DGAN + S + I+ P +SP+ KVAY +++ + VY+ Sbjct: 173 KVG----RRYQLQISDSDGANPQVALTSNEPII-SPAWSPDGTKVAYVSFESRKPV-VYV 226 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D I I N + AP +S +G+R +++ +D IY V+ + RLT + Sbjct: 227 HDL-ISGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTRSS 285 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQG 358 I+ S+SPD I F SDR G Q+Y M + G +R++ + P SP G Sbjct: 286 AIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPTEGEDAGSAQRVTFKGGYN-TSPRVSPDG 344 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 L+A+ G F + V L + S ++P+++ +G+ ++++ + G S L Sbjct: 345 KLLAYISRVGGAFKLYVQDLSNGDVTGLTDTSYDESPSFAANGKFILYATRVGGR--SVL 402 Query: 419 YSIDLNGRNETLIN-TPAYASDPQWVGFM 446 ++ +GR +++ +P W FM Sbjct: 403 AAVSTDGRTRQILSLQAGTVREPAWGPFM 431 >gi|288936479|ref|YP_003440538.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella variicola At-22] gi|288891188|gb|ADC59506.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella variicola At-22] Length = 430 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 104/428 (24%), Positives = 190/428 (44%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + ++ V +V+ DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGQGAAPEDVGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ T+ + + W++LG +V G+V +V ++L D + Sbjct: 71 LDRSRLPQQPTSAQEV-QPAAWSALGIDAVVVGQVTSNPDGSYQVAYQLVDTGGAPGTTL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 F + R AH SD +++ +TG KG F +RI +V + G L V D D Sbjct: 130 AQGSFKVTKQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQKN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N ++L Q L P +SP+ K+AY T++ ++ T + A ++I +F Sbjct: 189 GYN-QFLVHRSSQPLMSPAWSPDGSKLAYVTFESGR--SALVVQTLANGAVRQIASFPQH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++TN N S+ PDS + F Sbjct: 246 NGAPAFSPDGAKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNTEPSWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +RI+ + + D S G + +G + I + Sbjct: 306 SDQAGRPQVYKVNINGGTPQRITWEGSQNQ-DADVSADGKTMVMVSSAGGQQHIAKQDLE 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 AGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 SPAWSPYL 430 >gi|186477204|ref|YP_001858674.1| translocation protein TolB [Burkholderia phymatum STM815] gi|226705871|sp|B2JGA0|TOLB_BURP8 RecName: Full=Protein tolB; Flags: Precursor gi|184193663|gb|ACC71628.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia phymatum STM815] Length = 430 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 105/444 (23%), Positives = 203/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ GG + HA + V + IA F + ++S Sbjct: 3 LMTKLGLRALVASCLIAAGG----AAHAQLNVLVTGVGSTQFPIATANFANEANSPQQIS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S + W + GA V G V K + +V Sbjct: 59 TIVRQDLQRSGKFTNIDAGSAP---VSEGDSVDLGAWKAKGANAFVAGSVTKLPNGQYQV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D +++ + G + S R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVNQQSLGGLELVSPEGGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRV-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 SYSPD I F SDR G+ Q+Y M ++G +R++ + P SP G +A+ Sbjct: 289 PSYSPDGQSIYFTSDRGGQPQIYKMPASGEASGGAQRVTFTGNYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + + L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRTGGGFKLYIQDLQSGVATALTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|261343492|ref|ZP_05971137.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rustigianii DSM 4541] gi|282568638|gb|EFB74173.1| Tol-Pal system beta propeller repeat protein TolB [Providencia rustigianii DSM 4541] Length = 430 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 186/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 ++ + T A +++ + P+ + K+ +V ++V DL+ S Sbjct: 7 IVFGFLMLWATVAQAEIRIEITEGVNSAQPIGVVPFKWAGAGAPPQEVGQIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I Q+ + W +LG +V G+V V ++L DV Sbjct: 67 KFNPIEPSRMPQQPGTASEVI-PDAWTTLGINAVVVGQVQPAADGSFVVSYQLVDVAANP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + +F + R AHT SD++++ +TG +G F +RI +V ++ G L V Sbjct: 126 GAVLAQNQFKVTKDWLRYAAHTASDEVFEKLTGIRGAFRTRIAYVVKTN-GGQYPFELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ + L P +SP+ QK+AY T++ ++ T A +++ Sbjct: 185 SDYDGFN-QFTVHRSPEPLMSPAWSPDGQKIAYVTFESGS--SALVIQTLSSGAVRQVAK 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +DL S ++T+ N S+ PDS Sbjct: 242 FPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPSWMPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +V+ SD+ G+ Q+Y M NG R+S + + D SP G + G + I Sbjct: 302 LVYTSDQAGRPQVYKMNINGGSPVRVSYEGTQNQ-DADVSPDGTFLVMVSSGGGQQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 L + P+ +P+G +I+S + T +L + +GR + L T Sbjct: 361 QDLATGNVEYLTTTFLDETPSIAPNGTMVIYSSSQGLGTILQL--VSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|94311607|ref|YP_584817.1| translocation protein TolB [Cupriavidus metallidurans CH34] gi|119371053|sp|Q1LJX8|TOLB_RALME RecName: Full=Protein tolB; Flags: Precursor gi|93355459|gb|ABF09548.1| periplasmic protein [Cupriavidus metallidurans CH34] Length = 446 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 101/418 (24%), Positives = 187/418 (44%), Gaps = 18/418 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + +A F + ++ ++ DL S F + Sbjct: 42 HAQLNVEITGVGSNQFPVATANFQGEAQAPQNLTAIIRSDLTNSGRFRNVDPAGA---TV 98 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + W + GA V G V + V FRL+D + + G F + R Sbjct: 99 AESAQVDLGSWKAKGADAFVAGSVTPTSNGQYEVRFRLYDTAKGQSLGGLAFTVTQGQLR 158 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+D IY+ + GE+G F +R+ +VS+ + L + D DG N + S + Sbjct: 159 VTAHKIADYIYEKLLGERGVFATRLSYVSKVGN----RYQLLISDSDGQNAQIALTSTEP 214 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ ++VAY +++ + + VY+ D + + N + AP +S +G+ Sbjct: 215 II-SPAWSPDGRRVAYVSFEAKKPV-VYVHDLATGKRV-VVSNQKGNNSAPSWSPDGQHL 271 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S+ +D IY V+ + RLT + I+ +SPD I F SDR G Q+Y M Sbjct: 272 AVSLSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPQFSPDGRSIYFTSDRGGAPQIYRMP 331 Query: 333 SNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++G +R++ + P SP G +A+ SG F + + L + Sbjct: 332 ASGEESGAAQRVTFKGSYNV-SPRISPDGKYLAYISRSGG-FRLQLQDLSNGDVTSLTDT 389 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 +N ++P+++ +G+ ++++ + G S L ++ +GR + +++ +P W FM Sbjct: 390 TNDESPSFAANGKYILYATRVGGR--SVLAAVSTDGRTKQVLSLQSGAVREPSWGPFM 445 >gi|16759687|ref|NP_455304.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142540|ref|NP_805882.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32699709|sp|Q8Z8C0|TOLB_SALTI RecName: Full=Protein tolB; Flags: Precursor gi|25513116|pir||AH0592 tolB protein precursor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501980|emb|CAD05210.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhi] gi|29138171|gb|AAO69742.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 430 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 97/428 (22%), Positives = 186/428 (43%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + K+ + +V+ DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ + + W++LG ++ G V V ++L D + Sbjct: 71 LDRSRLPQQPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQLVDTGGAPGTVL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + + R HT SD++++ +TG KG F +RI +V ++ G L V D D Sbjct: 130 AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N +++ Q L P +SP+ K+AY T++ ++ T + A +++ +F Sbjct: 189 GYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F Sbjct: 246 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y M NG +RI+ + + D S G + + + I Sbjct: 306 SDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNNGQQHIAKQDLV 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 SPAWSPYL 430 >gi|312882597|ref|ZP_07742337.1| translocation protein TolB [Vibrio caribbenthicus ATCC BAA-2122] gi|309369757|gb|EFP97269.1| translocation protein TolB [Vibrio caribbenthicus ATCC BAA-2122] Length = 454 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 114/462 (24%), Positives = 207/462 (44%), Gaps = 34/462 (7%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSE 67 +N+K + L L+ F + A +++ S IA F G K +SE Sbjct: 1 MNIKRKIIQLFGLLVLFQSFAASAKLEIVITDGIDSARPIAILPFKWEGSAGQKPDNLSE 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD-RLRV 126 V+S DL RS F + + + I F +W LG LVTG V + R + Sbjct: 61 VISSDLMRSGKFKPLDVSQMPETPYSVSDI-NFSEWTKLGVDALVTGTVGFDATKQRYVI 119 Query: 127 EFRLWDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQS 165 ++L D+ + ++ K+ ++ A R +AH IS+ IY+ Sbjct: 120 NYQLVDIVRGQLTNGQAKSLSSDGELVLSQDYVLLNKRMTATSAQMRAVAHRISNRIYEQ 179 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TGEKG F +RI +V L V D DG N + + SR Q L P +SP+ ++ Sbjct: 180 LTGEKGAFETRIAYVVVK-DGDSYPYQLRVSDYDGFNEKLVLSSR-QPLMSPSWSPDGKQ 237 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AY ++ + +Y+MD + +++ ++ AP+FS +GK+ + + K + +Y Sbjct: 238 LAYVSFQNNKA-EIYIMDIYTGK-REKVTSYPRHNGAPKFSPDGKKLALVLSKTGNLQVY 295 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++D+ + ++TN+ N + PD ++F SDR GK Q+Y + + KR++ + Sbjct: 296 TLDIATKRLTQITNSRSNNTEPFWYPDGKSLIFTSDRGGKPQIYNVDLATNATKRLTWEG 355 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + +P G I S F + + + + ++L ++P+ SP+G +I Sbjct: 356 SQNLGGQ-ITPDGRFIVMVNRSQSGFNLAKLDLETNSMQILTHTQLDESPSISPNGGMVI 414 Query: 406 FSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +S + + L + ++GR + L T P W F+ Sbjct: 415 YSSIYN--QTNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 454 >gi|121607999|ref|YP_995806.1| translocation protein TolB [Verminephrobacter eiseniae EF01-2] gi|121552639|gb|ABM56788.1| TolB, N-terminal domain protein [Verminephrobacter eiseniae EF01-2] Length = 421 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 109/427 (25%), Positives = 195/427 (45%), Gaps = 10/427 (2%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 +L + A +V + + IA F + K++ +V DL+RS F Sbjct: 1 MLAALIATPVLPALAQFRVEVTGVGLTQLPIALAPFRGQAQAPQKMAAIVQADLERSGQF 60 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + D + + P W A L+ G V R V FRLWDV + + Sbjct: 61 RAVDADGA---ALDETTRPDLALWRKKNADSLLAGSVALSSNGRFDVRFRLWDVVKGQDL 117 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G+ F +P R +AH I+D I++ +TGE+G F++RI +V+ + + SL V D D Sbjct: 118 GGQSFLVTPGDLRLVAHRIADFIHEKLTGERGVFSTRIAYVTRTTNRTGARYSLWVADAD 177 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + S + I+ P +SP ++AY +++ + VY+ D R + I NFR Sbjct: 178 GENAQSALSSPESII-SPAWSPLGDQLAYVSFESRKPV-VYVHDVASGR-RRLIANFRGS 234 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP ++ +G+ +++ +D +Y++D RL + I+ ++S D I F Sbjct: 235 NSAPAWAPDGRTLAVTLSRDGGSQLYTIDANGGEPRRLMQSAGIDTEPAFSGDGRSIYFV 294 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G Q+Y + +G D +R++ + P SP G +A+ +G F + VM Sbjct: 295 SDRGGAPQIYKVGVSGGDAERVTFTGNYN-ISPSVSPDGRWLAYISRAGGAFKLQVMDLV 353 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 + + + + P+++P+ R ++++ ++ G L + L+G+ L Sbjct: 354 SGSVNAITDTTADENPSFAPNSRLIVYATEQQGR--EALMTTTLDGKIKARLAGQAGDIR 411 Query: 439 DPQWVGF 445 +P W F Sbjct: 412 EPDWGPF 418 >gi|258621415|ref|ZP_05716449.1| translocation protein TolB precursor [Vibrio mimicus VM573] gi|258626844|ref|ZP_05721651.1| translocation protein TolB precursor [Vibrio mimicus VM603] gi|258580891|gb|EEW05833.1| translocation protein TolB precursor [Vibrio mimicus VM603] gi|258586803|gb|EEW11518.1| translocation protein TolB precursor [Vibrio mimicus VM573] Length = 441 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 106/449 (23%), Positives = 201/449 (44%), Gaps = 32/449 (7%) Query: 22 VLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 +LIG F +A +++ + P++I K+ +L VS V++ DLQRS F Sbjct: 1 MLIGTGFTNVANAALELVITDGIDSARPIAIIPFKWEGGTKLPEDVSAVIASDLQRSGKF 60 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ- 138 + + Q + + + F W SLG L+TG + + + + ++L D+ + Sbjct: 61 SPVPTSKMPQTPYSEEQV-NFGKWTSLGVDSLLTGTITQNAEGSYVISYQLVDIVRGQLT 119 Query: 139 --------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 + K P+ R+ AH I+D +Y+ +TGE+G F +RI Sbjct: 120 QGQSKALSPDGQLVLSKDHVLFNKVATVPPSRMREYAHRIADLVYEELTGERGAFLTRIA 179 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V + L + D DG N R + S+ Q L P +SP+ Q +AY ++ + Sbjct: 180 YVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSFQNGQA-E 236 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +++M+ + K + +F APRFS +GK + + K + +Y++DL + + +T Sbjct: 237 IFMMNIYTGQRDK-LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLKEVT 295 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + N + PD ++F SDR GK Q+Y + + KR++ + +P G Sbjct: 296 SGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSDGATKRLTWQGSQNLGGQ-ITPDG 354 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + S F + + + ++L + ++P+ +P+G +I+S + + L Sbjct: 355 KFLVMVNRSDSGFNLAKLDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYN--KANVL 412 Query: 419 YSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + ++GR + L T P W F+ Sbjct: 413 SMVSIDGRFKARLPATNGRVRAPAWSPFL 441 >gi|311280380|ref|YP_003942611.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cloacae SCF1] gi|308749575|gb|ADO49327.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cloacae SCF1] Length = 430 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 96/428 (22%), Positives = 187/428 (43%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + ++ + +V+ DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ + + W++LG +V G+V V ++L D + Sbjct: 71 LDRSRLPQQPGTAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYTVAYQLVDTGGAPGTVL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + + R HT SD++++ +TG KG F +RI +V ++ G L V D D Sbjct: 130 AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N +++ Q L P +SP+ K+AY T++ ++ T + A +++ +F Sbjct: 189 GYN-QFVVHRSSQPLMSPAWSPDGAKLAYVTFESGR--SALVIQTLANGAVRQVASFPQH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y ++L S ++TN N ++ PDS + F Sbjct: 246 NGAPAFSPDGSKLAFALSKTGSLNLYVMNLASGQITQVTNGRSNNTEPNWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +RI+ + + D S G + + + I Sbjct: 306 SDQAGRPQVYKVNVNGGAPQRITWEGSQNQ-DADVSADGKFLVMVSSANGQQHIAKQDLA 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 AGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 FPAWSPYL 430 >gi|290474099|ref|YP_003466975.1| outer membrane integrity protein [Xenorhabdus bovienii SS-2004] gi|289173408|emb|CBJ80185.1| required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA [Xenorhabdus bovienii SS-2004] Length = 419 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 183/426 (42%), Gaps = 12/426 (2%) Query: 26 GFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLIS 83 + HA V++ + P+ + K+ ++ +++ DL+ S FN I Sbjct: 1 MMWAALAHAEVRIEITQGVDSARPIGVVPFKWTGAGNAPEEIGSIIAADLRNSGKFNPID 60 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIG 141 + Q+ + + W++LG ++ G++ V ++L D + Sbjct: 61 PNRMPQQPSTASEV-TPAAWSALGIDSVIVGQIQPAADGNYLVSYQLVDTAGAPGTVMAQ 119 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 +F R AHT SD +++ +TG KG F +R+ +V + G L V D DG Sbjct: 120 DQFKIEKKWLRHAAHTASDQVFEKLTGIKGAFRTRLAYVVKKSSVGKYPYELRVSDYDGY 179 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N ++ + L P + P+ ++AY T++ ++ T A +++ +F Sbjct: 180 N-QFTVHRSPEPLMSPAWLPDGSQLAYVTFESGR--SALVIQTLATTAVRQVASFPRHNG 236 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +G + + K ++++Y +DL S ++T+ N S+ PD+ +V+ SD Sbjct: 237 APAFSPDGTKLAFVLSKTGSLNLYMMDLASGQIRQVTDGRSNNTEPSWMPDNQTLVYTSD 296 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + G+ QLY + NG +R++ + + D S G I + I Sbjct: 297 QGGRPQLYKIDINGGAPQRLTWEGSQNQ-DADVSSDGSFIVMVSSASGSQHIAKQDLGTG 355 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 ++L + + P+ +P+G +I+S + G+ L + +GR + L T P Sbjct: 356 SVQMLTDTFLDETPSIAPNGTMVIYSSTQG--LGTVLQLVSTDGRFKARLPATDGQVKFP 413 Query: 441 QWVGFM 446 W ++ Sbjct: 414 AWSPYL 419 >gi|261341330|ref|ZP_05969188.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cancerogenus ATCC 35316] gi|288316635|gb|EFC55573.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter cancerogenus ATCC 35316] Length = 431 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 96/439 (21%), Positives = 189/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + ++ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPGTAQEV-QPAAWSALGIDAVVVGQVTPAPDGGYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N ++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFTVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLSNG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQIRQITDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 296 WFPDSQNLAFTSDQAGRPQVYKVNINGGAAQRITWEGSQNQ-DADISADGKTMVMVSTAG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 + T P W ++ Sbjct: 413 ARIPATDGQVKSPAWSPYL 431 >gi|148546494|ref|YP_001266596.1| translocation protein TolB [Pseudomonas putida F1] gi|148510552|gb|ABQ77412.1| Tol-Pal system beta propeller repeat, TolB [Pseudomonas putida F1] gi|313497574|gb|ADR58940.1| TolB [Pseudomonas putida BIRD-1] Length = 423 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 105/432 (24%), Positives = 206/432 (47%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 +L + G + V + S +P+++ L +++++ DL+ S + Sbjct: 1 MLCCVAGMAVAEEK-NILVTSGSDRATPIAVVPFGLQGGSVLPEDIADIIGNDLRNSGYY 59 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + I + + + + + F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q+ Sbjct: 60 SPIPRQNMISQPSQASEVI-FRDWKALGAQYVMVGSIVPSG-GRLQVQYALFNVATEQQV 117 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGIIKNSLCVMDR 198 + S R +AH I+D ++ +TG KG F++R+L+V+ + + +L D Sbjct: 118 LTGSVAGSTDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDY 177 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DGA L SR+ I PRF+P+ +++AY +++ + R+++ + R +++ NF Sbjct: 178 DGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQNIDTGR-REQVTNFEG 234 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + AP +S +G R + KD DIY +++ S R+T IN + D + + F Sbjct: 235 LNGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYF 294 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVM 376 SDR GK Q+Y +G +R++ + +P S + F + Sbjct: 295 TSDRGGKPQIYKQSVSGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQQGFTNFKVAAQ 353 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-A 435 ++L E S ++PT +P+G LI++ ++ G L + LNGR + T Sbjct: 354 DLQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSLNGRVRLPLPTAQG 411 Query: 436 YASDPQWVGFMD 447 +P W +++ Sbjct: 412 EVREPSWSPYLN 423 >gi|167035189|ref|YP_001670420.1| translocation protein TolB [Pseudomonas putida GB-1] gi|166861677|gb|ABZ00085.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas putida GB-1] Length = 423 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 105/432 (24%), Positives = 206/432 (47%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 +L + G + V + S +P+++ L +++++ DL+ S + Sbjct: 1 MLCCVAGMAVAEEK-NILVTSGSDRATPIAVVPFGLQGGSVLPEDIADIIGNDLRNSGYY 59 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + I + + + + + F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q+ Sbjct: 60 SPIPRQNMISQPSQASEVI-FRDWKALGAQYVMVGSIVPSG-GRLQVQYALFNVATEQQV 117 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGIIKNSLCVMDR 198 + S R +AH I+D ++ +TG KG F++R+L+V+ + + +L D Sbjct: 118 LTGSVAGSTDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDY 177 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DGA L SR+ I PRF+P+ +++AY +++ + R+++ + R +++ NF Sbjct: 178 DGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFIQNIDTGR-REQVTNFEG 234 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + AP +S +G R + KD DIY +++ S R+T IN + D + + F Sbjct: 235 LNGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYF 294 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVM 376 SDR GK Q+Y +G +R++ + +P S + F + Sbjct: 295 TSDRGGKPQIYKQSVSGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQQGFTNFKVAAQ 353 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-A 435 ++L E S ++PT +P+G LI++ ++ G L + LNGR + T Sbjct: 354 DLQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSLNGRVRLPLPTAQG 411 Query: 436 YASDPQWVGFMD 447 +P W +++ Sbjct: 412 EVREPSWSPYLN 423 >gi|120599219|ref|YP_963793.1| translocation protein TolB [Shewanella sp. W3-18-1] gi|146292707|ref|YP_001183131.1| translocation protein TolB [Shewanella putrefaciens CN-32] gi|166988084|sp|A4Y5U9|TOLB_SHEPC RecName: Full=Protein tolB; Flags: Precursor gi|166988086|sp|A1RKP4|TOLB_SHESW RecName: Full=Protein tolB; Flags: Precursor gi|120559312|gb|ABM25239.1| TolB, N-terminal domain protein [Shewanella sp. W3-18-1] gi|145564397|gb|ABP75332.1| TolB, N-terminal domain protein [Shewanella putrefaciens CN-32] Length = 442 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 199/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 MKI L L L T A + + + IA F +++VV Sbjct: 1 MKI-LAKWLALAVLLCTTPTKAALDIVITEGIDAARPIAVMPFVWQGTGAPPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGAVAQFQASAWGSVGAEALVLGSVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQSLKGAVSPTEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L + D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMIADYDGFNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R GK QLY + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLLFTSERGGKPQLYRVDLASGKVTRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M + ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLNTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPVGQGEVKSPSWSPFL 442 >gi|307545156|ref|YP_003897635.1| translocation protein TolB [Halomonas elongata DSM 2581] gi|307217180|emb|CBV42450.1| translocation protein TolB [Halomonas elongata DSM 2581] Length = 429 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 214/437 (48%), Gaps = 10/437 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSK 71 M+ + L + F A + + N IA F L ++++V+ Sbjct: 1 MRALMTTWLAALLLFCTPLAQAELTIDITRGNEQATPIAVVPFADEGASLPVDLAQIVAD 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+RS F + + + +K ++ D + RF DW +L + +V GRV +EG+ +RV + L Sbjct: 61 DLERSGYFAPLERGAMFEKPSSSDEV-RFGDWKALDTRYMVVGRVSREGEG-VRVRYELM 118 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV +++G+ +S R AH ISD ++++ITG +G F++RI +V+ V + Sbjct: 119 DVSGESRMLGETVTASSGQLRAAAHRISDQVFEAITGIRGAFSTRIAYVTSEGVGDNMSF 178 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D DG N + S D+ + P +SP+ +K+AY +++ E +Y+ + R K Sbjct: 179 RLFVADADGHNSQQAL-SSDEPIMSPSWSPDGRKLAYVSFEGERPA-IYVQEVSSGRRVK 236 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +F + AP +S +G++ +++ +D +IY++D+ S +R+TN+ I ++SP Sbjct: 237 -LTSFEGLNSAPSWSPDGRKLAVALSRDGQPEIYTIDIGSRDLQRITNSPSIETEPAWSP 295 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D +++ SDR G Q+Y G + +R++ + ++P G+ I + Sbjct: 296 DGRSLIYTSDRSGGPQIYRQALGGGEPERLTYTGNYNARA-RFAPDGEAIFLIHKGNNGY 354 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TL 430 + D + + + ++P+ +P+G +IF+ ++ L ++ +GR L Sbjct: 355 QVARQDLDNGRLVEISDAQQAESPSVAPNGTMVIFATQQGSRG--VLGAVSADGRASFRL 412 Query: 431 INTPAYASDPQWVGFMD 447 +P W F++ Sbjct: 413 PAAQGDVREPAWSPFLN 429 >gi|194366891|ref|YP_002029501.1| translocation protein TolB [Stenotrophomonas maltophilia R551-3] gi|194349695|gb|ACF52818.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas maltophilia R551-3] Length = 439 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 112/440 (25%), Positives = 211/440 (47%), Gaps = 13/440 (2%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYS--PVSIAFTKFVSIDELGG-KVSEV 68 M L + L+ F + + + N S P+++ + V+ V Sbjct: 3 KMPRWLAVFAALLLPFAAVAQQKGLDIDIIGGNASALPITVVPMPYQGSSAAPQTDVAGV 62 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V DL+RS F + + +K I +F W +L +V GRV+ G RVE+ Sbjct: 63 VRADLERSGQFRTLPEAQIVEKPVRGGDI-QFATWRALKQNYIVVGRVLDAGAGAYRVEY 121 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV ++++G + + R +AH ++D IY+ ITG +G F +RI +V+ S Sbjct: 122 ELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKGDA 181 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 ++ +L V D DG N + + S + L P +SP+ K+AY +++ + +Y+ + Sbjct: 182 MRYALMVADSDGFNPQTIVRSAEP-LLSPSWSPDGSKLAYVSFERGNSA-IYIQNIGTG- 238 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A + + +FR + AP FS +G++ +++ + +IY +DL S +LTN I+ + Sbjct: 239 ARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLAQLTNHFAIDTEPT 298 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++PD S + F SDR G+ Q+Y + + G +R++ + P S G IA + SG Sbjct: 299 WAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVTFQGNYNA-KPSVSYDGKKIAVAQGSG 357 Query: 369 EKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I +M R L S ++P+++P+ ++++ ++ G LY++ + R Sbjct: 358 NSYKIAMMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADAR 415 Query: 427 -NETLINTPAYASDPQWVGF 445 + L+ +P W + Sbjct: 416 VRQRLVLADGDVREPAWSPY 435 >gi|317491197|ref|ZP_07949633.1| tol-Pal system beta propeller repeat protein TolB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920744|gb|EFV42067.1| tol-Pal system beta propeller repeat protein TolB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 430 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 104/445 (23%), Positives = 199/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + L +L + + +HA V++ P+ + K++ Sbjct: 1 MKQAFRVAMGLLIL-------WASVLHAEVRIVITQGVDTARPIGVVPFKWMGPGSAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T + W +LG +V G+V Sbjct: 54 IGGIVAADLRNSGKFNPIDTNRMPQQPTTVAEV-TPAAWTALGIDAVVVGQVQPSADGGY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V +++ D + ++ + R AHT SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQMVDTSGNPGSVLSQNQYKVTKQWLRYAAHTSSDEVFEKLTGIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGQFPYELRVADYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +DL S A ++T+ Sbjct: 229 QTLSNGAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSGAIRQVTDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N S+ PDS + F SD+ G+ Q+Y + NG +R++ + + D S G + Sbjct: 289 NNTEPSWFPDSQNLAFTSDQGGRPQIYKVNINGGAPERLTWEGSQNQ-DGDVSSDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 SG I + + ++L + P+ +P+G +I+S + GS L + Sbjct: 348 MVGTSGGSQHITKLDLGSNANQVLTSTFLDETPSIAPNGTMVIYSSTQG--LGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|319426011|gb|ADV54085.1| TonB biopolymer transport system periplasmic component, TolB [Shewanella putrefaciens 200] Length = 442 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 199/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 MKI L L L T A + + + IA F +++VV Sbjct: 1 MKI-LAKWLALAVLLCTTPTKAALDIVITEGIDAARPIAVMPFVWQGTGAPPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGAVAQFQASAWGSVGAEALVLGSVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQSLKGPVSPTEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L + D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMIADYDGFNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R GK QLY + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLLFTSERGGKPQLYRVDLASGKVTRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M + ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLNTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPVGQGEVKSPSWSPFL 442 >gi|326316638|ref|YP_004234310.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373474|gb|ADX45743.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax avenae subsp. avenae ATCC 19860] Length = 439 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 106/427 (24%), Positives = 196/427 (45%), Gaps = 14/427 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 ++ L A ++ + A F K+S ++ DL+RS F Sbjct: 23 IVALASAATALPALAQFRLDIVGVGTTQYPTAIAPFRGEAGSPQKISAIIQADLERSGQF 82 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 ++ + +S P W GA L TG V + R V FRLW+ + + Sbjct: 83 RVVDGSG---PQLDENSRPDAALWKEKGADSLTTGSVTRLPDGRYDVRFRLWNTVRGEDL 139 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G+ F + R +AH I+D +Y+ +TG++G F++RI +V+++ + SL V D D Sbjct: 140 GGQSFVVTQGDLRLVAHRIADYVYEKLTGQRGIFSTRIAYVTKAGS----RYSLWVADSD 195 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + S + I+ P +SP+ ++AY +++ + VY+ D R + I NFR Sbjct: 196 GENAQSALSSPEPII-SPAWSPSGTQLAYVSFESRKPV-VYVHDVSTGR-RRLIANFRGS 252 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G+ +++ +D + +Y++D RL + I+ +YS D I F Sbjct: 253 NSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSSDGRSIYFV 312 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G Q+Y + + G +R++ + P SP G +A+ G F + VM Sbjct: 313 SDRGGAPQIYRVPATGGSAERVTFTGAYN-ISPSISPDGKWLAYISRVGGAFKLHVMDLT 371 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 + + + ++P+++P+G+ ++++ ++ G L + L+G+ L Sbjct: 372 SGSVTAITDTTADESPSFAPNGKLIVYATQQQGR--EALMTTTLDGKIKARLAGQSGDIR 429 Query: 439 DPQWVGF 445 +P W F Sbjct: 430 EPDWGPF 436 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 8/140 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I FVS+ + + + G + +T + P SP+ + +AY + Sbjct: 308 SIYFVSDRGGAP----QIYRVPATGGSAERVTFTG-AYNISPSISPDGKWLAYIS-RVGG 361 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++++MD + +P F+ NGK + + Q+ + + L Sbjct: 362 AFKLHVMDLTSGSVTAI--TDTTADESPSFAPNGKLIVYATQQQGREALMTTTLDGKIKA 419 Query: 296 RLTNTLFINISASYSPDSSQ 315 RL + P Q Sbjct: 420 RLAGQSGDIREPDWGPFQKQ 439 >gi|330445541|ref|ZP_08309193.1| tol-Pal system beta propeller repeat protein TolB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489732|dbj|GAA03690.1| tol-Pal system beta propeller repeat protein TolB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 442 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 207/449 (46%), Gaps = 23/449 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 + LCL L+ + F ++ + +SA P+ + ++ +L +S V++ Sbjct: 3 RWIMGLCLALLSVSQFANAALELVITDGVDSAR--PIGVVPFQWEGEGKLPTDISAVIAS 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DLQRS F+ + + Q N I + W+ +G +VTG + K V ++L Sbjct: 61 DLQRSGKFSPVPTNKLPQLPHNESQI-DYSAWSKMGVDAVVTGTIAKNPDGTYTVNYQLV 119 Query: 132 DVKDRKQ-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 D+ K ++ + P R+ AH ISD IYQ +TGE+G F +RI Sbjct: 120 DIVKGKLAAGTEGAAKGDYLLLNNQASVKPNRMRQYAHRISDLIYQKLTGERGAFLTRIA 179 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V ++ L V D DG N R + S+ Q L P +SP+ K+AY +++ + Sbjct: 180 YV-DNNQGAKFPYQLLVADYDGYNERVVLKSK-QPLMSPAWSPDGSKLAYVSFESGKA-Q 236 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++++D + + + ++ +P+FS +G + + + K ++ +Y DL++ ++T Sbjct: 237 IFVLDIYTGK-REVVADYPRHNGSPQFSPDGSKLAMVLSKTGSLQVYIKDLRTKQLRQIT 295 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + N A ++PD I F SDR G+ Q+Y M D +R++ + P +P G Sbjct: 296 HGRANNTEAVWAPDGQSIYFTSDRGGRPQVYHMDLATGDTQRVTWQGSQN-MGPQVTPDG 354 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + S + I ++L + ++P+ +P+G +I+S ++ T +L Sbjct: 355 RYLVVVNRSDSGYNIAKQDLKTGAMQILTKARLAESPSIAPNGSMIIYSSAQNNGT-YEL 413 Query: 419 YSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + ++GR + L ++ P W F+ Sbjct: 414 SLVSIDGRFQARLPSSSKRVRAPSWGPFL 442 >gi|113970703|ref|YP_734496.1| translocation protein TolB [Shewanella sp. MR-4] gi|114047932|ref|YP_738482.1| translocation protein TolB [Shewanella sp. MR-7] gi|122944592|sp|Q0HTY0|TOLB_SHESR RecName: Full=Protein tolB; Flags: Precursor gi|123029559|sp|Q0HHM8|TOLB_SHESM RecName: Full=Protein tolB; Flags: Precursor gi|113885387|gb|ABI39439.1| TolB, N-terminal domain protein [Shewanella sp. MR-4] gi|113889374|gb|ABI43425.1| TolB, N-terminal domain protein [Shewanella sp. MR-7] Length = 442 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 200/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVS 70 MKI L L L A + + P+++ ++ +++VV Sbjct: 1 MKI-LAKWLALAVLLCTMPAKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + W ++GA+ +V G V G D+ V F L Sbjct: 60 SDLIRSGTFKPLDELGLPQRGIGALAQFDASAWANVGAEAVVVGSVKPYGTDQFLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPTSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + S SL + D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HSQKAAYSLMIADYDGYNEQMLLRSPEP-LMSPSWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPTFSPDGKSLAVTLSKDGQPEIYVIDIATKAAKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ QLY + N R + + E + +P Sbjct: 296 TNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPVGQGEVKSPSWSPFL 442 >gi|103485823|ref|YP_615384.1| translocation protein TolB [Sphingopyxis alaskensis RB2256] gi|118574599|sp|Q1GWC1|TOLB_SPHAL RecName: Full=Protein tolB; Flags: Precursor gi|98975900|gb|ABF52051.1| TolB-like protein [Sphingopyxis alaskensis RB2256] Length = 454 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 155/458 (33%), Positives = 229/458 (50%), Gaps = 17/458 (3%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA-NYSPVSIAFTKFVSI- 58 MSLR I+ L + + L P ++ + + I F + Sbjct: 1 MSLRP-ISLMLALLLTSAPALAQSAPTPPATVQTEPRETIEGTLSQERTVIGIPSFATAS 59 Query: 59 ---------DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQ 109 D LG ++++V++ DL+RS +F I + + PRF +W + GA+ Sbjct: 60 VQTVAGLRTDALGRQLADVIAADLERSGLFEPIGPNGVRAIGRAEVQAPRFGEWQARGAE 119 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 +V G V L V L+D +++ K F PA WR+ AH +D IY ++GE Sbjct: 120 NVVHGFVDAGSNGSLIVGCYLYDTALGSELVRKGFEIQPADWRRAAHKCADAIYSRLSGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 F+SR+ +++ES G L +MD DG N R++T + + PRFSP+ +K+ Y Sbjct: 180 APFFDSRVAYIAESGPKGNRIKRLAIMDSDGGNHRFITNGQ-ALALSPRFSPDYKKIVYV 238 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +Y D +RV++ D + + R+ APR+S +G + L S+ DIY + Sbjct: 239 SY-LNDRVRVFIYDVASGTQ-RLVTESRNPTFAPRWSPDGTQILYSMAVGGNTDIYRISA 296 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 RLT I++ S+SPD +IVFESDR G +QLYVM +GS+Q+RIS Y Sbjct: 297 NGGTPVRLTTAPGIDVGGSFSPDGRKIVFESDRSGSQQLYVMNIDGSNQQRISFGG-GRY 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 P WSP+GDLIAFT+ G +F IGVM G R+L +APTWSP+GR + F R Sbjct: 356 ATPEWSPRGDLIAFTRMGGGEFRIGVMTPSGGGVRMLTNGWQDEAPTWSPNGRVIQFFRT 415 Query: 410 KDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 G G S L+ +DL G N + TP SDP W + Sbjct: 416 TPGREGRSSLWQVDLTGVNLRRLPTPQDGSDPSWGPVL 453 >gi|121604951|ref|YP_982280.1| translocation protein TolB [Polaromonas naphthalenivorans CJ2] gi|166229983|sp|A1VNY1|TOLB_POLNA RecName: Full=Protein tolB; Flags: Precursor gi|120593920|gb|ABM37359.1| TolB, N-terminal domain protein [Polaromonas naphthalenivorans CJ2] Length = 429 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 112/428 (26%), Positives = 204/428 (47%), Gaps = 14/428 (3%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 + L+ G F S A +V + + + IA F + K+ +V DL+RS + Sbjct: 13 VSLLAAGAFSSMSAFAQFRVEVSGVGMTQLPIAIAPFRGEAQSPQKIGSIVKADLERSGM 72 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F + + + ++ P W GA +VTG V R V RLWDV + Sbjct: 73 FRGVDAGGV---VADENTRPDLASWRQKGADAMVTGSVSPLADGRFDVRLRLWDVVREQD 129 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 + G+ + + + R AH +SD +Y+ +TGEKG F++RI +V+++ + +L V D Sbjct: 130 LGGQSYTVTKSDLRLSAHRVSDFVYEKLTGEKGIFSTRIAYVTKAG----QRYTLWVADS 185 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG + + S + I+ P +SP+ ++AY +++ + +Y D + + + NFR Sbjct: 186 DGESAQSALASPEPII-SPAWSPSGAQLAYVSFESRKPV-IYSHDVATGK-RRLLANFRG 242 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 AP +S +G + + ++ + IYS+ L +RLT + I+ ++SPD I F Sbjct: 243 SNSAPAWSPDGSQLVATLSQAGGSQIYSIGLNGGDPKRLTQSSSIDTEPAFSPDGRLIYF 302 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G Q+Y M G + +R++ + PV SP G +A+ G F + VM+ Sbjct: 303 VSDRGGSPQIYRMSPAGGNAERVTFTGSYN-ISPVVSPDGRWLAYVSRVGGGFKLHVMEL 361 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYA 437 + + S ++P+++P+ R ++++ ++ G L + L+G+ L Sbjct: 362 STGTVTSITDTSADESPSFAPNSRLIVYATQQQGK--EALMTTTLDGKIKARLSGAGGDI 419 Query: 438 SDPQWVGF 445 +P W F Sbjct: 420 REPDWGPF 427 >gi|118574593|sp|Q3K7W5|TOLB_PSEPF RecName: Full=Protein tolB; Flags: Precursor Length = 433 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 210/441 (47%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M+ L +LV+I + + S +P+++ F L ++E++ Sbjct: 1 MRNLLRGMLVVICCMAGIVMADEKNILVTSGSDRATPIAVVPFGFQGGAVLPDDMAEIIG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S ++ I + + + + P I F+DW ++GAQ ++ G ++ G RL+V++ L Sbjct: 61 NDLRNSGYYSPIPKQNMISQPSQPSEII-FRDWKAVGAQYMMVGSIVPAG-GRLQVQWAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +++ + R +AH ISD ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQKVADGSVSGTTEQLRDMAHYISDQSFEKLTGIKGAFSTRLLYVTAERFSEKNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ + R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFMQNIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + KD DIY ++L S R+T IN + Sbjct: 236 REQITNFEGLNGAPAWSPDGNRLAFVLSKDGNPDIYVMNLGSRQITRVTAGPGINTEPYW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S I F SDR GK Q+Y + G +R++ + +P S + Sbjct: 296 GKDGSTIYFTSDRGGKPQIYKTSAGGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L + + ++PT +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFKVAAQDLQRGSVKILTDSTLDESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|253997444|ref|YP_003049508.1| Tol-Pal system beta propeller repeat-containing protein TolB [Methylotenera mobilis JLW8] gi|253984123|gb|ACT48981.1| Tol-Pal system beta propeller repeat protein TolB [Methylotenera mobilis JLW8] Length = 433 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 104/433 (24%), Positives = 213/433 (49%), Gaps = 13/433 (3%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQR 75 L + + + HA +++ + N + IA F + ++ ++S DL+R Sbjct: 12 LLACTLTVSAMMTSVSHAALEIEISGGNAQQLPIAIVPFNQDAVKNQENIANIISADLRR 71 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F ++ K + + ++ DW SL AQ + G+V +RL+V F+L DV Sbjct: 72 SGMFRVLETAGVASKPSTIAQV-KYSDWASLQAQAIAVGKVEALPGNRLKVSFQLGDVLK 130 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + Q+ + +P+ R AH I+D IYQ +TGE F SRI ++++S + +L V Sbjct: 131 QTQLADMDYNITPSQLRMTAHKIADVIYQKLTGESAIFASRIAYINKS----KGRYALQV 186 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N + + S + I+ P +SP+ K+AY +++ + + + + + + + Sbjct: 187 ADADGVNPQTVVSSNEPII-SPAWSPDGTKIAYVSFEKKKP--IIFVQSLMTGQRITLAS 243 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F+ AP ++ +G + I + +Y ++ + ++L+ + I+ +SPD+ Sbjct: 244 FKGNNSAPAWAPDGSKLAIVLTHAANSQLYLINADGSGLKQLSKSSAIDTEPVWSPDAKW 303 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F SDR G Q+Y + S G D +R++ D + P +SP G +A + G ++ + + Sbjct: 304 VYFSSDRGGSPQIYKVSSLGGDAQRVTFDGTYNL-SPRFSPDGKSLAMIRNDGGRYRVAL 362 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTP 434 Q ++L E + ++P+++P+GR ++++ + G L ++ +GR + L + Sbjct: 363 QNLATGQVQILSEGNQDESPSFAPNGRVVLYATRSAGRGA--LAAVSADGRVKQRLSESG 420 Query: 435 AYASDPQWVGFMD 447 +P W ++ Sbjct: 421 GDIREPAWGPLLN 433 >gi|221068062|ref|ZP_03544167.1| Tol-Pal system beta propeller repeat protein TolB [Comamonas testosteroni KF-1] gi|220713085|gb|EED68453.1| Tol-Pal system beta propeller repeat protein TolB [Comamonas testosteroni KF-1] Length = 417 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 107/412 (25%), Positives = 189/412 (45%), Gaps = 14/412 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +V + + IA F K+S ++ DL+RS F + + Sbjct: 16 QFRVEVTGVGLTQLPIAIAPFKGEGSAPQKISAIIQADLERSGQFRGVDASGV---ALDE 72 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 S P W GA L TG + + R V FRLWDV + + G+ F + R + Sbjct: 73 TSRPDVAQWRQKGADSLATGSITRLADGRWDVRFRLWDVVKGQDLGGQGFAVTTGDLRLV 132 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D IY+ +TGEKG F++RI +V+++ + L + D DG N + S + I+ Sbjct: 133 AHRIADYIYEKLTGEKGIFSTRIAYVTKAGA----QYRLWIADADGENAQSALSSPEPII 188 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P ++PN ++AY +++ + VY+ D + + NFR AP +S +G R + Sbjct: 189 -SPAWAPNGTQLAYVSFESRKPV-VYVHDVASG-HRRLLANFRGSNSAPAWSPDGSRLAV 245 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y + Q RL + I+ +S D I F SDR G Q+Y + S+ Sbjct: 246 TLSRDGGSQLYLLSAQGGEPRRLMQSSGIDTEPCFSSDGRTIYFVSDRGGAPQVYKVSSS 305 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R++ + P SP G +A+ G F + VM + + + ++ Sbjct: 306 GGSAERVTFSGTYN-ISPAISPDGKWLAYVSRVGGGFKLQVMDLATGTVNSVTDTTADES 364 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 P+++P+ R ++++ + G L + L+G+ + + P +P W F Sbjct: 365 PSFAPNSRLIVYATIQGGR--EALMTTTLDGKIKARLAGPSGDIREPDWGPF 414 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 11/185 (5%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + ++ D + ++ IS +++P+ +Q+ + S K +Y Sbjct: 153 TRIAYVTKAGAQYRLWIADADGENAQSALSSPEPIISPAWAPNGTQLAYVSFESRKPVVY 212 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V +R+ + S P WSP G +A T + ++ G + R L++ Sbjct: 213 VHDVASG-HRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGGSQLYLLSAQGGEPRRLMQS 271 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQ 441 S + P +S GR++ F + G ++Y + +G + + +PA + D + Sbjct: 272 SGIDTEPCFSSDGRTIYFVSDRGG--APQVYKVSSSGGSAERVTFSGTYNISPAISPDGK 329 Query: 442 WVGFM 446 W+ ++ Sbjct: 330 WLAYV 334 >gi|117920972|ref|YP_870164.1| translocation protein TolB [Shewanella sp. ANA-3] gi|166988085|sp|A0KY89|TOLB_SHESA RecName: Full=Protein tolB; Flags: Precursor gi|117613304|gb|ABK48758.1| TolB, N-terminal domain protein [Shewanella sp. ANA-3] Length = 442 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 108/450 (24%), Positives = 200/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVS 70 MKI L L L A + + P+++ ++ +++VV Sbjct: 1 MKI-LAKWLALAVLLCTMPAKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + W ++GA+ +V G V G D+ V F L Sbjct: 60 SDLIRSGTFKPLDELGLPQRGIGALAQFDASAWANVGAEAVVVGSVKPYGTDQFLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPTSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + SL + D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAAYSLMIADYDGYNEQMLLRSPEP-LMSPSWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPTFSPDGKSLAVTLSKDGQPEIYVIDIATKAAKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ QLY + N R + + E + +P Sbjct: 296 TNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPVGQGEVKSPSWSPFL 442 >gi|229592295|ref|YP_002874414.1| translocation protein TolB [Pseudomonas fluorescens SBW25] gi|259533872|sp|C3JYS2|TOLB_PSEFS RecName: Full=Protein tolB; Flags: Precursor gi|229364161|emb|CAY51810.1| TolB colicin import protein [Pseudomonas fluorescens SBW25] Length = 433 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 206/441 (46%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M+ L +LV+I + + S +P+++ + L ++++VS Sbjct: 1 MRNLLRGMLVVICCMAGIAAADEKNILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + + + F+DW ++GAQ L+ G + G RL++++ L Sbjct: 61 DDLRNSGYYAPIPKGNMISQPNQASEVV-FRDWKAVGAQYLMVGNITPAG-GRLQIQYTL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH ISD ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGSVSGTAEQLRDMAHYISDQSFEKLTGIKGAFSTRLLYVTAERFSVDNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQRRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + KD DIY +++ S R+T+ IN + Sbjct: 236 REQITNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNMASRQISRVTSGPGINTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S I F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTIYFTSDRGGKPQVYKANVNGGGAERVTFIGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L + + ++ T +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFRVAAQDLQRGTVKILTDTNLDESATVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|260772527|ref|ZP_05881443.1| TolB protein precursor [Vibrio metschnikovii CIP 69.14] gi|260611666|gb|EEX36869.1| TolB protein precursor [Vibrio metschnikovii CIP 69.14] Length = 450 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 105/458 (22%), Positives = 195/458 (42%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L + +L+ + +++ + P++I K+ L +S V++ Sbjct: 1 MLKRLIIGWLLVFTSSMQLAYGALELVITDGINSARPIAIVPFKWEGKTPLPEDISAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ I+ D Q + + F W +G L+TG + + + ++L Sbjct: 61 SDLQRSGKFSPIATDRMPQTPYSETEV-TFDAWTRIGVDALLTGSITLNQQGNYVINYQL 119 Query: 131 WDVKDRKQIIGKKFFSSPAS---------------------WRKIAHTISDDIYQSITGE 169 DV + G+ S R+ AH ISD +Y+ +TGE Sbjct: 120 VDVVRGQLTQGQSRALSADGQLVLSKDHVLFNKVATIPAPRMREYAHRISDLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 KG F +RI +V + L V D DG N R + S+ Q L P +SP+ +++AY Sbjct: 180 KGAFLTRIAYVVVN-DKDSFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGRQLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++MD +++ ++ APRFS +GK + + K + +Y++DL Sbjct: 238 SFQNGQA-EIFIMDIYTGE-REKLTSYPRHNGAPRFSPDGKTLALVLSKTGTLQVYTLDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 S ++T+ N + PD ++F SDR G Q+Y + R++ + Sbjct: 296 ASRKLTQITHGRSNNTEPFWHPDGKSLIFTSDRGGNPQIYRVNLANQAVDRLTWQGRQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F I + ++L + ++P+ +P+G +I+S Sbjct: 356 GGQ-ITPDGRFMIMVNRSNSGFHIAKQDLETGALQVLTQTLLDESPSIAPNGGMVIYSSM 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + L + ++GR + L T P W F+ Sbjct: 415 YN--QANVLSMVSIDGRFKARLPATNGRVRSPAWSPFL 450 >gi|264677753|ref|YP_003277659.1| protein tolB [Comamonas testosteroni CNB-2] gi|299529321|ref|ZP_07042760.1| translocation protein TolB [Comamonas testosteroni S44] gi|262208265|gb|ACY32363.1| protein tolB [Comamonas testosteroni CNB-2] gi|298722699|gb|EFI63617.1| translocation protein TolB [Comamonas testosteroni S44] Length = 417 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 107/412 (25%), Positives = 187/412 (45%), Gaps = 14/412 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +V + + IA +F K+S ++ DL+RS F + + Sbjct: 16 QFRVEVTGVGLTQLPIAIAQFKGEGSAPQKISAIIQADLERSGQFRGVDASGL---ALDE 72 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 S P W GA L TG + + R V FRLWDV + + G+ F + R + Sbjct: 73 TSRPDVAQWRQKGADSLATGSITRLADGRWDVRFRLWDVVKGQDLGGQGFAVTTGDLRLV 132 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D IY+ +TGEKG F++RI +V+++ L + D DG N + S + I+ Sbjct: 133 AHRIADYIYEKLTGEKGIFSTRIAYVTKAGA----HYRLWIADADGENAQSALSSPEPII 188 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P ++PN ++AY +++ + VY+ D + + NFR AP +S +G R + Sbjct: 189 -SPAWAPNGTQLAYVSFESRKPV-VYVHDVASG-HRRLLANFRGSNSAPAWSPDGSRLAV 245 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y + Q RL + I+ +S D I F SDR G Q+Y + S+ Sbjct: 246 TLSRDGGSQLYLLSAQGGEPRRLMQSSGIDTEPCFSSDGRTIYFVSDRGGAPQVYKVSSS 305 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R++ + P SP G +A+ G F + VM + + + ++ Sbjct: 306 GGSAERVTFTGNYN-ISPAISPDGKWLAYISRVGGGFKLQVMDLATGTVNSVTDTTADES 364 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 P+++P+ R ++++ + G L + L+G+ L +P W F Sbjct: 365 PSFAPNSRLIVYATIQGGR--EALMTTTLDGKIKARLAGASGDIREPDWGPF 414 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 11/185 (5%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + ++ D + ++ IS +++P+ +Q+ + S K +Y Sbjct: 153 TRIAYVTKAGAHYRLWIADADGENAQSALSSPEPIISPAWAPNGTQLAYVSFESRKPVVY 212 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V +R+ + S P WSP G +A T + ++ G + R L++ Sbjct: 213 VHDVASG-HRRLLANFRGSNSAPAWSPDGSRLAVTLSRDGGSQLYLLSAQGGEPRRLMQS 271 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQ 441 S + P +S GR++ F + G ++Y + +G + + +PA + D + Sbjct: 272 SGIDTEPCFSSDGRTIYFVSDRGG--APQVYKVSSSGGSAERVTFTGNYNISPAISPDGK 329 Query: 442 WVGFM 446 W+ ++ Sbjct: 330 WLAYI 334 >gi|254448714|ref|ZP_05062172.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium HTCC5015] gi|198261722|gb|EDY86009.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium HTCC5015] Length = 442 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 108/445 (24%), Positives = 216/445 (48%), Gaps = 11/445 (2%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGK 64 + + + + + + F + A +++ ++ P++I ++ L Sbjct: 3 LLQRTAVSTFCFVSFLCVSLGFSGAAQAVLEIRITQSSDLARPIAIVPFEWQGEQALPTD 62 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 VS VV DL+RS F ++++ K + S +Q+W +L L+ G++ G+ R Sbjct: 63 VSSVVRTDLERSGQFKALAEEDMLAKP-SAGSRINWQNWRTLEMPHLLVGKIRSTGEGRY 121 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 V+ +L+DV +Q++G + ++ + R+ AH ++D++Y+ ITG +G F++RI FVS Sbjct: 122 AVDVQLFDVNRGRQLLGYSYPATAKTLRRTAHKVADEVYEEITGVRGAFSTRIAFVSVET 181 Query: 185 VSGIIKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 S + SL V D DG R + S I P +SP+ +AY ++ + V+ ++ Sbjct: 182 RSAKDRTFSLQVADADGHAPRTVVRSSQPI-LSPTWSPDGMHLAYVSFRNRQA-EVFAVN 239 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + +++ F + AP FS +G + +++ + DIY +D+++ +++T I Sbjct: 240 LRTGKE-QKLSGFDGINGAPAFSPDGNQLAMALSRSGNPDIYVLDMKTRQLKQITRGYSI 298 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S+S D + + S R G Q+Y + + G KR+S + + SP G +A Sbjct: 299 ETEPSWSSDGDTLYYTSGRTGSPQIYAVSARGGTPKRVSFEGGYNASAAA-SPDGRNLAM 357 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + I V R+L + ++P+++P+G+ L+++ +K G L ++ L Sbjct: 358 VHSQRGSYRIAVKDLKSDLFRVLTDGPQDESPSFAPNGQMLLYATQKGGKG--VLAAVSL 415 Query: 424 NGR-NETLINTPAYASDPQWVGFMD 447 +GR + L+ T +P W F + Sbjct: 416 DGRVKQELLLTEGDIREPAWSPFNN 440 >gi|238756016|ref|ZP_04617340.1| hypothetical protein yruck0001_31470 [Yersinia ruckeri ATCC 29473] gi|238705741|gb|EEP98134.1| hypothetical protein yruck0001_31470 [Yersinia ruckeri ATCC 29473] Length = 413 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 13/420 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K++ ++ +V+ DL+ S FN I Q Sbjct: 2 LHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGSIVAADLRNSGKFNPIDVARMPQ 61 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSS 147 + + + W +LG +V G+V V ++L D + ++ + Sbjct: 62 QPSTAAEV-TPAAWTALGIDAVVVGQVQPGADGSYLVSYQLVDTAGAAGSILAQNQYKIT 120 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R AHT SD++++ +TG KG F +RI +V ++ G + L V D DG N +++ Sbjct: 121 KQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVV 178 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L P +S + K+AY T++ ++ T + A K++ +F AP FS Sbjct: 179 HRSPEPLMSPAWSADGSKIAYVTFESGK--SALVIQTLANGAIKQVASFPRHNGAPAFSP 236 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G + ++ K ++++Y ++L S ++T+ N S+ PDS + + SD+ G+ Q Sbjct: 237 DGTKLAFALSKSGSLNLYVMNLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQ 296 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + NG +RI+ + + V S G +A S I + ++L Sbjct: 297 VYKVNINGGAPQRITWEGSQNQNADV-SADGKFLALVSSSSGSQHIAKQDLETGAVQVLT 355 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + + P+ +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 356 DTFLDETPSIAPNGTMVIYSSTQG--LGSVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 413 >gi|217973704|ref|YP_002358455.1| translocation protein TolB [Shewanella baltica OS223] gi|254764842|sp|B8EAK3|TOLB_SHEB2 RecName: Full=Protein tolB; Flags: Precursor gi|217498839|gb|ACK47032.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS223] Length = 442 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M+I L L L T A + + + IA F +++VV Sbjct: 1 MRI-LAKWLALAVLLCTTPAKAALDIVITEGVDAARPIAVMPFVWQGPGAAPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W+S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGTAAQFQANSWSSVGAEALVLGTVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L V D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK I++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYIIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|304409844|ref|ZP_07391464.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS183] gi|307304200|ref|ZP_07583953.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica BA175] gi|304352362|gb|EFM16760.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS183] gi|306913098|gb|EFN43521.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica BA175] Length = 442 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 MKI L L L T A + + + IA F +++VV Sbjct: 1 MKI-LAKWLALAVLLCTTPAKAALDIVITEGVDAARPIAVMPFVWQGPGAAPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W+S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGTVAQFQANSWSSVGAEALVLGTVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L V D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAVTLSKDGQPEIYIIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|242238602|ref|YP_002986783.1| translocation protein TolB [Dickeya dadantii Ech703] gi|242130659|gb|ACS84961.1| Tol-Pal system beta propeller repeat protein TolB [Dickeya dadantii Ech703] Length = 428 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 103/438 (23%), Positives = 193/438 (44%), Gaps = 18/438 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSK 71 +KI L L+ + +HA V++ S IA F S + + +V+ Sbjct: 5 LKIALSFLM-----LWAAVLHAEVRIEITQGVDSARPIAVVPFKSAGGAVPEDIGNIVAA 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I Q+ + W +LG ++ G+V + ++L Sbjct: 60 DLRNSGKFNPIDPSRMPQQPGTAAEV-TPAAWTALGIDAVIVGQVQPTADG-YLISYQLV 117 Query: 132 DVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + +F + R AHT SD+++Q +TG KG F +RI +V ++ G Sbjct: 118 DTSGSAGSVLAQNQFKVTRQWLRYAAHTASDEVFQKLTGIKGAFRTRIAYVVQTN-GGQY 176 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N +++ + L P +SP+ K+AY T++ ++ T + Sbjct: 177 PYELRVADYDGYN-QFVVHRSPEPLMSPSWSPDGSKLAYVTFESGR--SALVIQTLANGD 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N ++ Sbjct: 234 IRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQITDGRSNNTEPTW 293 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PDS + + SD+ G+ Q+Y + +NG +R++ + + V S G I + Sbjct: 294 FPDSQTLAYTSDQAGRPQIYKIGANGGTPQRLTWEGAQNQDSEVSS-DGKFIVMVSSNSG 352 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 I ++L + + P+ +P+G +I+S K+ GS L + +GR + Sbjct: 353 AQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKA 410 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 411 RLPATDGQVRFPAWSPYL 428 >gi|160874900|ref|YP_001554216.1| translocation protein TolB [Shewanella baltica OS195] gi|189035987|sp|A9KY50|TOLB_SHEB9 RecName: Full=Protein tolB; Flags: Precursor gi|160860422|gb|ABX48956.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS195] gi|315267137|gb|ADT93990.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella baltica OS678] Length = 442 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 201/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 MKI L L L T A + + + IA F +++VV Sbjct: 1 MKI-LAKWLALAVLLCTTPAKAALDIVITEGVDAARPIAVMPFVWQGPGAAPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W+S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGTVAQFQANSWSSVGAEALVLGTVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L V D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK I++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYIIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|126173975|ref|YP_001050124.1| translocation protein TolB [Shewanella baltica OS155] gi|166988081|sp|A3D3E2|TOLB_SHEB5 RecName: Full=Protein tolB; Flags: Precursor gi|125997180|gb|ABN61255.1| TolB, N-terminal domain protein [Shewanella baltica OS155] Length = 442 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M+I L L L T A + + + IA F +++VV Sbjct: 1 MRI-LAKWLALAVLLCTTPAKAALDIVITEGVDAARPIAVMPFVWQGSGAAPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W+S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGTAAQFQANSWSSVGAEALVLGTVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L V D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK I++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYIIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|12084602|pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol- Dependent Translocation System And Its Interactions With The Translocation Domain Of Colicin E9 gi|114794794|pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain gi|114794795|pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain gi|114794796|pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain gi|114794797|pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin E9 T-Domain Length = 439 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 197/446 (44%), Gaps = 20/446 (4%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGG 63 + + L + +L + + +HA V++ +S P+ + ++ Sbjct: 1 MMKQALRVAFGFLIL-------WASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPE 53 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 + +V+ DL+ S FN + + Q+ + + + W++LG +V G+V Sbjct: 54 DIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGS 112 Query: 124 LRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L D + + + R HT SD++++ +TG KG F +RI +V Sbjct: 113 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVV 172 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ G L V D DG N +++ Q L P +SP+ K+AY T++ + Sbjct: 173 QTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALV 228 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 IQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 288 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++ PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFM 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +G + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLV 405 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 STDGRFKARLPATDGQVKFPAWSPYL 431 >gi|149927732|ref|ZP_01915984.1| translocation protein TolB precursor [Limnobacter sp. MED105] gi|149823558|gb|EDM82788.1| translocation protein TolB precursor [Limnobacter sp. MED105] Length = 445 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 118/438 (26%), Positives = 208/438 (47%), Gaps = 14/438 (3%) Query: 12 NMKINLCLLLVLIGGFFPT-SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 ++ + +LL T A +K+ + ++ + F L + +V+ Sbjct: 19 RLRRSASILLAFFALVTMTVPAQAQLKIDITGVGANQIAFSAAPFQGNQGLPEDIKKVIE 78 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F I+ S + N ++ W S+G L+ G V K RL + F L Sbjct: 79 DDLVRSGFFRSINTTSNVE--LNESTLIDPSAWKSIGVDALIVGSVKKLPDGRLDLRFNL 136 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 D +K + + +P++ R AH I+D +Y+ + GEKG F++R+ +V + Sbjct: 137 HDTAQQKSLGKFSYVIAPSALRLHAHKIADFVYEKMLGEKGVFSTRLAYVE----KAPGR 192 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L + D DGAN + S++ I+ P +SP+ ++AY +++ V + T Sbjct: 193 YRLIIADADGANPQVALASKEPII-SPAWSPDGTQLAYVSFETRKP--VVFVHTLATGRR 249 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 K + NF+ AP +SSNG++ + + KD I+S++ ++ RLT+T IN +YS Sbjct: 250 KALANFKGSNSAPAWSSNGQQLAVVLTKDGGSQIFSMNADGSSLNRLTSTGGINTEPAYS 309 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D I F SDR G Q+Y M +NG D R++ + + P SP + + + Sbjct: 310 HDGRSIYFTSDRGGGPQIYRMSTNGGDATRVTFEGGYN-ISPRISPDDKTLTYVTRRDGQ 368 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-T 429 F I + G E LL ++P+++P+GR ++++ K G L + +GR + T Sbjct: 369 FRIAALDLAGGTEMLLTNTGRDESPSFAPNGRYILYATKSGGKGT--LAVVSKDGRIKYT 426 Query: 430 LINTPAYASDPQWVGFMD 447 L ++ A S+P W F++ Sbjct: 427 LSSSGADISEPTWGPFIN 444 >gi|310767030|gb|ADP11980.1| translocation protein TolB [Erwinia sp. Ejp617] Length = 430 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 197/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + +++ +L V HA V++ P+ + K+ Sbjct: 1 MKQAFRVALSVLMLFV-------AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T+ + + W +LG ++ G+V Sbjct: 54 IGGIVAADLRNSGKFNPIDRARLPQQPTSVAEV-QPAAWTALGIDAVIVGQVQPGADGSY 112 Query: 125 RVEFRLWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D ++ ++ + F W R AHT SD+ ++ +T KG F +RI +V + Sbjct: 113 TVSYQLVDTSGNQGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ KVAY T++ ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + Sbjct: 229 QTLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ D + D S G + Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWDGAQNQ-DADVSSDGKSMV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + L + + P+ +P+G +I+S + GS L + Sbjct: 348 MISTNSGAQHVARQDLVTGAVQQLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|241662341|ref|YP_002980701.1| translocation protein TolB [Ralstonia pickettii 12D] gi|240864368|gb|ACS62029.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia pickettii 12D] Length = 434 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 115/419 (27%), Positives = 191/419 (45%), Gaps = 18/419 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 HA + V + S IA F + +S +V DL RS F+ + + Sbjct: 29 AHAQLNVEISGVGASQYPIAIANFQGEAQAPQNLSAIVRADLARSGRFSNVDVAGA---V 85 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 P W S GA V G V + G DR + FRL+D + + G P Sbjct: 86 VPESPAPDLGAWKSKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESLGGLSLTRGPGQL 144 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IYQ + GE+G F +R+ +VS+ + L + D DGAN + S + Sbjct: 145 RLAAHEIADYIYQKLIGERGVFATRLSYVSKVG----RRFQLQISDSDGANPQIALTSNE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + + VY+ D R I N + AP +S +G+ Sbjct: 201 PII-SPSWSPDGTKVAYVSFESKKPV-VYVHDLVAGR-RTVISNQKGNNSAPAWSPDGRH 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +S+ +D +Y V+ + RL+ + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQIYRM 317 Query: 332 QSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +G +R++ + P SP G L+A+ G F + L + Sbjct: 318 SVDGEEAGAAQRVTFKGNYN-TSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 SN ++P+++ +G+ ++++ + G S L ++ +GR +++ +P W FM Sbjct: 377 TSNDESPSFAANGKFILYATRVGGK--SVLAAVSTDGRTRQVLSLQAGEVREPAWGPFM 433 >gi|157374996|ref|YP_001473596.1| TolB domain-containing protein [Shewanella sediminis HAW-EB3] gi|189035990|sp|A8FUE5|TOLB_SHESH RecName: Full=Protein tolB; Flags: Precursor gi|157317370|gb|ABV36468.1| TolB, N-terminal domain protein [Shewanella sediminis HAW-EB3] Length = 442 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 110/443 (24%), Positives = 206/443 (46%), Gaps = 23/443 (5%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 LVL + + A + + P+++ + ++S+VV DL RS Sbjct: 7 WLVLGLVILSSPVRAALDIVITEGIDAARPIAVVPFVWQGQGPAPQQISDVVMSDLTRSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F + + S Q+ + S + +DW ++GA+ +V G + G+D+ V F L D+ + Sbjct: 67 TFKTLDELSLPQRNISAISQFQAKDWANVGAEAVVMGAIKPYGEDKYLVSFDLVDLVKAQ 126 Query: 138 Q-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 I ++ S A +R+ H ISD IY+ +TG +G F +RI +V Sbjct: 127 MQSGTGPQSKQEFLIDSRETVISSAQFRQYGHRISDIIYEKLTGIRGAFLTRIAYVVVKH 186 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N + L S + L P +SP+ +++AY +++++ +++ D Sbjct: 187 GE-KSPYQLMISDYDGHNEQMLLRSPEP-LMSPSWSPDGRQLAYVSFENKKA-EIFIQDI 243 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 K I +F + AP FS +GK+ +++ KD +IY VD+ + A +R+TN I+ Sbjct: 244 YTQSRSK-ITSFAGINGAPVFSPDGKKLALTLSKDGQPEIYVVDISTKALKRVTNHYAID 302 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 AS+ PD ++F S+R G+ Q+Y + +R++ + E + + P G + F Sbjct: 303 TEASWFPDGKSLIFTSERGGRPQIYKVTLASGKVQRMTFEGEWNLGGSIL-PDGRSMIFV 361 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + K+ I M + ++L ++P+ +P+G +I+ G L ++ + Sbjct: 362 NRTNGKYNIARMDLETRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--VLAAVSTD 419 Query: 425 GRNETLINTP-AYASDPQWVGFM 446 GR + + T P W F+ Sbjct: 420 GRFKARLPTGQGEVKSPSWSPFL 442 >gi|271499764|ref|YP_003332789.1| Tol-Pal system beta propeller repeat-containing protein TolB [Dickeya dadantii Ech586] gi|270343319|gb|ACZ76084.1| Tol-Pal system beta propeller repeat protein TolB [Dickeya dadantii Ech586] Length = 428 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 105/438 (23%), Positives = 193/438 (44%), Gaps = 18/438 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSK 71 +KI L L+ + +HA V++ S I F S + ++ +V+ Sbjct: 5 LKIALSFLM-----LWTAVLHAEVRIEITQGVDSARPIGVVPFKSTGGAVPEEIGSIVAA 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I Q+ + W +LG +V G+V V ++L Sbjct: 60 DLRNSGKFNPIDPSRMPQQPGTAAEV-TPSAWTALGIDAVVVGQVQPTADG-YLVSYQLV 117 Query: 132 DV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + +F + R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 118 DTSGNAGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQY 176 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N +++ + L P +SP+ K+AY T++ ++ T + Sbjct: 177 PYELRVADYDGYN-QFVVHRSPEPLMSPAWSPDGSKLAYVTFESGR--SALVVQTLANGD 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I +F AP FS +G + ++ K ++++Y ++L S ++T+ N ++ Sbjct: 234 IRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPTW 293 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PDS + + SD+ G+ Q+Y + NG +R++ + + D S G + +G Sbjct: 294 FPDSQTLAYTSDQAGRPQIYKIGINGGAPQRLTWEGAQNQ-DAEISSDGKFLVMVSSNGG 352 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 I ++L + + P+ +P+G +I+S K+ GS L + +GR + Sbjct: 353 AQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKA 410 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W +M Sbjct: 411 RLPATDGQVRFPTWSPYM 428 >gi|254229963|ref|ZP_04923365.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio sp. Ex25] gi|151937532|gb|EDN56388.1| Tol-Pal system beta propeller repeat protein TolB [Vibrio sp. Ex25] Length = 450 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 100/458 (21%), Positives = 194/458 (42%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + ++ +A +++ + P+++ K+ L +S V++ Sbjct: 1 MIRRLLLGMFVLFSSMTNVANAALELVITDGIDSARPIAVVPFKWEGTQALPTDISAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + F W +LG L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPFSESEV-NFDAWTNLGVDALLTGSIKQNAQGDYVINYQL 119 Query: 131 WDVKDRKQIIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGE 169 D+ + GK R+ AH ISD +Y+ +TG+ Sbjct: 120 VDIVRGQLTGGKSKALGSDGELVLSKDHVLFNKVATVQGPRMREYAHRISDLVYEQLTGD 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 180 RGAFMTRIAYVVVN-DKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ ++I ++ APRFS +G + I + K ++ +Y+ DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGNKLAIVLSKTGSLHVYTFDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 NTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +++S Sbjct: 356 GGQ-ITPDGRFLVMVNRSNAGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 YNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|56476928|ref|YP_158517.1| translocation protein TolB [Aromatoleum aromaticum EbN1] gi|67461905|sp|Q5P4Z6|TOLB_AZOSE RecName: Full=Protein tolB; Flags: Precursor gi|56312971|emb|CAI07616.1| tolB protein precursor, periplasmic component of the Tol biopolymer transport system [Aromatoleum aromaticum EbN1] Length = 426 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 103/415 (24%), Positives = 199/415 (47%), Gaps = 14/415 (3%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 A + + A + +A F + L +++VV DL+RS +F+L+ Sbjct: 23 AQAQLSIEITGAGATRFPVAIPLFENEGSLPRGITDVVRADLERSGLFSLVD---MGLVT 79 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 ++P + GA ++ G + + R V FRL+D + + ++ G +PA Sbjct: 80 LPATAVPDLAGVRARGADAVLAGSLYPQADGRYDVRFRLFDTQKQTELGGLSLRMTPAQN 139 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D +Y+ +TG+ G F +RI +V +S + L + D DG N + SR+ Sbjct: 140 RATAHRIADFVYEKLTGQPGYFATRIAYVVKSGP----RYELQIADADGMNAQTALASRE 195 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P ++P+ Q++AY +++ + V + T + NF+ AP ++ +G+R Sbjct: 196 PII-SPAWAPDGQRLAYVSFEAKKP--VVYVHTLATGQRHVVANFKGSNSAPTWAPDGQR 252 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + KD +Y ++ + R+ + I+ ++SPD I F SDR G Q+Y + Sbjct: 253 LAVVLTKDGQSQLYVLNADGSGLRRMATSPGIDTEPAWSPDGEWIYFSSDRGGSAQIYRI 312 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++G +R++ + + P SP G +AF + +F + VM Q +L + S Sbjct: 313 PASGGSAQRVTFEGNYNVT-PRLSPDGRSLAFITRNNGRFQVAVMDLATRQTTILTDSSR 371 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+++P+GR ++++ + G L ++ +GR + L A +P W Sbjct: 372 DESPSFAPNGRMILYATESGGRG--VLAAVSSDGRVKQRLSVQAADVREPSWGPL 424 >gi|88861314|ref|ZP_01135945.1| outer membrane protein [Pseudoalteromonas tunicata D2] gi|88816693|gb|EAR26517.1| outer membrane protein [Pseudoalteromonas tunicata D2] Length = 451 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 108/465 (23%), Positives = 212/465 (45%), Gaps = 39/465 (8%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + LCLL+ + + A +++ + P+ + K++ + + G Sbjct: 1 MFNRFKYLAGLCLLIA------SSQLFAALEIFITEGVNSARPIGVVPFKYIGVGQAPGD 54 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +S+V++ DL+RS FN I+ + QK + D + W G + +V G++ ++ R Sbjct: 55 ISDVIAADLRRSGKFNPIATINMPQKPSK-DGEVDYGAWAQEGIEAIVVGQIEQQTGGRY 113 Query: 125 RVEFRLWDVKDRKQIIGK--------------------KFFSSPASWRKIAHTISDDIYQ 164 V + L DV + G+ + + S+R+ H ISD +Y+ Sbjct: 114 LVSYELIDVLRGQLTGGQTQMLSNGKLVNNQDHILDARQTVITDDSFRRYGHRISDVVYE 173 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 ++TGE+G F +++ +V + L V D DG N + L S++ L P +SP+ Sbjct: 174 ALTGERGAFLTKVAYVIVR-DDQAMPYQLVVADYDGYNEQVLLRSKEP-LMSPDWSPDGT 231 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAM 282 K+AY T+++ ++Y+ D + +R+ + + AP+FS +G + + + KD A Sbjct: 232 KLAYVTFENRQS-QIYIQDIYTGK-RERLTSHPGINGAPKFSPDGTKLALVLSKDKDGAT 289 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +IY +DL++ A R+T I+ S+ P+ +IVF S+R G Q+Y + +R++ Sbjct: 290 EIYVMDLKTRAERRVTRHRSIDTEPSWHPNGQEIVFTSERGGNAQIYSVNLATGKTRRLT 349 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 D + + +P G + + ++ + + ++L ++P+ +P+G Sbjct: 350 FDGDMNL-AGSITPDGKDLIMVNRTAGRYHLAKKELKTGDFQVLTATRLDESPSMAPNGS 408 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +I+S D L S+D GR + L P W F+ Sbjct: 409 MIIYSTLHDNKQVLALVSMD--GRFKARLPVANGQVKAPAWSPFL 451 >gi|24374289|ref|NP_718332.1| tolB protein [Shewanella oneidensis MR-1] gi|32699702|sp|Q8EDJ8|TOLB_SHEON RecName: Full=Protein tolB; Flags: Precursor gi|24348827|gb|AAN55776.1|AE015714_3 tolB protein [Shewanella oneidensis MR-1] Length = 442 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 200/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVS 70 MKI L L L+ T A + + P+++ ++ +++VV Sbjct: 1 MKI-LAKWLTLVVLLCTTPAKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + W ++ A+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRGIGALAQFDANAWTNVSAEALVVGSVKPYGADQFLVSFEL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGSANPTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + S SL + D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HSQKAAYSLMIADYDGYNEQMLLRSPEP-LMSPAWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK +++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFSGINGAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ QLY + N R + + E + +P Sbjct: 296 TNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|153000267|ref|YP_001365948.1| translocation protein TolB [Shewanella baltica OS185] gi|166988082|sp|A6WM46|TOLB_SHEB8 RecName: Full=Protein tolB; Flags: Precursor gi|151364885|gb|ABS07885.1| Tol-Pal system beta propeller repeat TolB [Shewanella baltica OS185] Length = 442 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVS 70 M+I L L L T A + + + IA F +++VV Sbjct: 1 MRI-LAKWLALAVLLCTTPAKAALDIVITEGVDAARPIAVMPFVWQGPGAAPQAIADVVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q+ + + W+S+GA+ LV G V G D+ V F L Sbjct: 60 SDLVRSGTFKPLDELGLPQRNIGTVAQFQANSWSSVGAEALVLGTVKPYGTDQYLVSFDL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S A +R+ H ISD +Y+ +TG +G F +RI Sbjct: 120 IDLVKAQNQALKGPVSATEFLMDSRQTVISAAQFRQYGHRISDIVYEKLTGIRGAFLTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + + L V D DG N + L S + L P +SP+ +++AY +++++ Sbjct: 180 SYVVVN-HTQKAPYQLMVADYDGVNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENKKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + ++ +F + AP FS +GK I++ KD +IY +D+ + A +R+ Sbjct: 237 EIFVQDLYT-QVRTKVSSFPGINGAPAFSPDGKSLAITLSKDGQPEIYIIDIATKAIKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I+ S+ PD ++F S+R G+ Q+Y ++ + R + + E + +P Sbjct: 296 TNHYAIDTEPSWYPDGKSLIFTSERGGRPQIYRVELSSGKVSRETFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ +GR + L P W F+ Sbjct: 413 LAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|227327556|ref|ZP_03831580.1| translocation protein TolB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 430 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 100/441 (22%), Positives = 195/441 (44%), Gaps = 16/441 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + + L ++ + HA V++ + P+ + K+ V + Sbjct: 1 MKQVLKVALSFLM---LWTAVAHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGI 57 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V DL+ S FN I + Q+ + W +LG +V G+V V + Sbjct: 58 VGADLRNSGKFNPIDANRMPQQPATASEV-TPAAWTALGIDAVVVGQVQPSADGSYLVSY 116 Query: 129 RLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D ++ + F W R AHT SD++++ ++G KG F +RI +V ++ Sbjct: 117 QLVDTSGNPGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-G 175 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L V D DG N +++ Q L P +S + K+AY T++ ++ T Sbjct: 176 GQFPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTFESGR--SALVIQTLA 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N Sbjct: 233 NGAIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ PDS + + SD+ G+ Q+Y + +NG +R++ + + D S G + Sbjct: 293 PTWFPDSQTLAYTSDQAGRPQVYKVNANGGAPQRLTWEGSQNQ-DSDVSADGKFLVTVSS 351 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G I + ++L + + P+ +P+G +I+S K+ GS L + +GR Sbjct: 352 NGGAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGR 409 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 410 FKARLPATDGQVKFPAWSPYL 430 >gi|300704850|ref|YP_003746453.1| protein tolb, component of the tol-pal system [Ralstonia solanacearum CFBP2957] gi|299072514|emb|CBJ43864.1| protein tolB, component of the tol-pal system [Ralstonia solanacearum CFBP2957] Length = 434 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 116/419 (27%), Positives = 189/419 (45%), Gaps = 18/419 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 HA + V + S IA F + ++ +V DL RS F+ + + Sbjct: 29 AHAQLNVEISGVGSSQYPIAVAHFQGETQAPENITAIVRSDLARSGRFSNVDVAGA---V 85 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 P W + GA V G V + G DR + FRL+D + + G Sbjct: 86 VPESPAPDLGAWKTRGAAAFVGGTVTRSG-DRYEIRFRLYDTAKGESLGGLSLTRGEGQL 144 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IYQ + GE+G F +R+ +VS+ L + D DGAN + S + Sbjct: 145 RLAAHEIADFIYQKLMGERGVFATRLSYVSKVG----RHYQLQISDSDGANPQIALTSSE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + VY+ D R I N + AP +S +G+R Sbjct: 201 PII-SPSWSPDGTKVAYVSFESRKPV-VYVHDLVTGR-RAVISNQKGNNSAPAWSPDGRR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V+ + RLT + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGHSIYFTSDRGGAPQIYRM 317 Query: 332 QSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +G +R++ + P SP G L+A+ G F + V L + Sbjct: 318 PVDGEDAGGAQRVTFKGGYN-TSPRVSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVGFM 446 S ++P+++ +G+ ++++ + G S L ++ +GR +TL +P W FM Sbjct: 377 TSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQTLSLQAGQVREPAWGPFM 433 >gi|283479096|emb|CAY75012.1| Protein tolB precursor [Erwinia pyrifoliae DSM 12163] Length = 439 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 195/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + +++ +L V HA V++ P+ + K+ Sbjct: 10 MKQAFRVALSVLMLFV-------AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPED 62 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T+ + + W +LG ++ G+V Sbjct: 63 IGGIVAADLRNSGKFNPIDRARLPQQPTSVAEV-QPAAWTALGIDAVIVGQVQPGADGSY 121 Query: 125 RVEFRLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D ++ + F W R AHT SD+ ++ +T KG F +RI +V + Sbjct: 122 TVSYQLVDTSGNPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQ 181 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ KVAY T++ ++ Sbjct: 182 TN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVI 237 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + Sbjct: 238 QTLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRY 297 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ D + D S G + Sbjct: 298 NSTEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWDGAQNQ-DADVSSDGKSMV 356 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + L + + P+ +P+G +I+S + GS L + Sbjct: 357 MISTNSGAQHVARQDLVTGAVQQLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 414 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 415 TDGRFKARLPATDGQVKFPAWSPYL 439 >gi|309780840|ref|ZP_07675581.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp. 5_7_47FAA] gi|308920522|gb|EFP66178.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp. 5_7_47FAA] Length = 434 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 114/419 (27%), Positives = 191/419 (45%), Gaps = 18/419 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 HA + V + S IA F + +S +V DL RS F+ + + Sbjct: 29 AHAQLNVEISGVGASQYPIAIANFQGEAQAPQNLSAIVRADLARSGRFSNVDVAGA---V 85 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 P W + GA V G V + G DR + FRL+D + + G P Sbjct: 86 VPESPAPDLGAWKTKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESLGGLSLTRGPGQL 144 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IYQ + GE+G F +R+ +VS+ + L + D DGAN + S + Sbjct: 145 RLAAHEIADYIYQKLIGERGVFATRLSYVSKVG----RRFQLQISDSDGANPQIALTSNE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + + VY+ D R I N + AP +S +G+ Sbjct: 201 PII-SPSWSPDGTKVAYVSFESKKPV-VYVHDLVAGR-RTVISNQKGNNSAPAWSPDGRH 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +S+ +D +Y V+ + RL+ + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQIYRM 317 Query: 332 QSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +G +R++ + P SP G L+A+ G F + L + Sbjct: 318 SVDGEEAGAAQRVTFKGNYN-TSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 SN ++P+++ +G+ ++++ + G S L ++ +GR +++ +P W FM Sbjct: 377 TSNDESPSFAANGKFILYATRVGGK--SVLAAVSTDGRTRQVLSLQAGEVREPAWGPFM 433 >gi|120612059|ref|YP_971737.1| translocation protein TolB [Acidovorax citrulli AAC00-1] gi|120590523|gb|ABM33963.1| TolB, N-terminal domain protein [Acidovorax citrulli AAC00-1] Length = 438 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 109/426 (25%), Positives = 196/426 (46%), Gaps = 14/426 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 +V + A +V + + A F K+S +V DL+RS F Sbjct: 23 IVALASAASFPAFAQFRVEITGVGLTQLPTAIAPFRGEAGAPQKISAIVQADLERSGQFR 82 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + + +S P W GA L TG + + R V FRLW+ + Sbjct: 83 AVDASG---PQLDENSRPDVALWKQKGADSLTTGSITRLPDGRYDVRFRLWETVRGEDKG 139 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G+ F + A R +AH I+D +Y+ +TG++G F++RI +V+++ + SL V D DG Sbjct: 140 GQSFVVTQADLRLVAHRIADYVYEKLTGQRGIFSTRIAYVTKAGS----RYSLWVADADG 195 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N + S + I+ P +SP+ ++AY +++ + VY+ D R + I NFR Sbjct: 196 ENAQSALSSPEPII-SPAWSPSGTQLAYVSFESRKPV-VYVHDVSTGR-RRLIANFRGSN 252 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 AP +S +G+ +++ +D + +Y++D RL + I+ +YS D I F S Sbjct: 253 SAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSSDGRSIYFVS 312 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G Q+Y + + G +R++ + P SP G +A+ G F + VM Sbjct: 313 DRGGAPQIYRVPATGGSAERVTFTGTYN-ISPSISPDGKWLAYISRVGGAFKLHVMDLTS 371 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASD 439 + + + ++P+++P+GR ++++ ++ G L + L+G+ L + Sbjct: 372 GSVTAITDTTADESPSFAPNGRLIVYATQQQGR--EALMTTTLDGKIKARLAGQNGDIRE 429 Query: 440 PQWVGF 445 P W F Sbjct: 430 PDWGPF 435 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 8/140 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I FVS+ + + + G + +T + P SP+ + +AY + Sbjct: 307 SIYFVSDRGGAP----QIYRVPATGGSAERVTFTG-TYNISPSISPDGKWLAYIS-RVGG 360 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++++MD + +P F+ NG+ + + Q+ + + L Sbjct: 361 AFKLHVMDLTSGSVTAI--TDTTADESPSFAPNGRLIVYATQQQGREALMTTTLDGKIKA 418 Query: 296 RLTNTLFINISASYSPDSSQ 315 RL + P Q Sbjct: 419 RLAGQNGDIREPDWGPFQKQ 438 >gi|227114917|ref|ZP_03828573.1| translocation protein TolB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 430 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 101/439 (23%), Positives = 195/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 +K+ L L+ + +HA V++ + P+ + K+ V +V Sbjct: 5 LKVALSFLM-----LWTAVVHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVG 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN I + Q+ + W +LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPIDANRMPQQPATASEV-TPAAWTALGIDAVVVGQVQPSADGSYLVSYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + +F + R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 119 VDTSGNPGNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +S + K+AY T++ ++ T + Sbjct: 178 FPYELRVADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N + Sbjct: 235 AIRQVASFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + + SD+ G+ Q+Y + +NG +R++ + + D S G + +G Sbjct: 295 WFPDSQTLAYTSDQAGRPQVYKVNANGGAPQRLTWEGSQNQ-DSDVSADGKFLVTVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + ++L + + P+ +P+G +I+S K+ GS L + +GR + Sbjct: 354 GAQHISKLDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|260597139|ref|YP_003209710.1| translocation protein TolB [Cronobacter turicensis z3032] gi|260216316|emb|CBA29301.1| Protein tolB [Cronobacter turicensis z3032] Length = 430 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 97/441 (21%), Positives = 195/441 (44%), Gaps = 16/441 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + + ++ + +HA V++ + P+ + K+ + + Sbjct: 1 MKQALRVAFSFLM---LWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGI 57 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+ DL+ S FN + + Q+ ++ + + W++LG +V G+V G V + Sbjct: 58 VAADLRNSGKFNPLDRSRLPQQPSSAQEV-QPAAWSALGIDAVVVGQVTPNGDGSYTVAY 116 Query: 129 RLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + + + R HT SD++++ +TG KG F +RI +V ++ Sbjct: 117 QLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-G 175 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L V D DG N +++ Q L P +SP+ KVAY T++ ++ T Sbjct: 176 GQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGR--SALVIQTLS 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ N Sbjct: 233 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ PDS + + SD+ G+ Q+Y + NG +R++ + + D S G + Sbjct: 293 PTWYPDSQTLAYTSDQAGRPQVYKVNINGGAPQRVTWEGSQNQ-DADVSSDGKFMVMVSS 351 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G I + + L + P+ +P+G +I+S + GS L + +GR Sbjct: 352 NGGAQNIAKLDLVTGGVQTLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGR 409 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 410 FKARLPATDGQVKFPAWSPYL 430 >gi|58581291|ref|YP_200307.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425885|gb|AAW74922.1| TolB protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 461 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 217/443 (48%), Gaps = 16/443 (3%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAF-----VKVATNSANYSPVSIAFTKFVSIDELGG-KV 65 +MK L L L P S A + + SA+ +P+++ + V Sbjct: 22 SMKKPLRWLAALTVLLLPLSALAQQQGLTIDIVGGSASATPIAVIPMPYQGSGTAPQTDV 81 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 S VV DL RS F + +K T + +FQ W +L +V GRV+ G+ R Sbjct: 82 SAVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAYR 140 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 VE+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 141 VEYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGK 200 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + +YL D Sbjct: 201 GGAMRYALMVADSDGYNPQTIVRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDIA 258 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 259 TG-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDT 317 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +++PD I F SDR G+ Q+Y + ++G R++ + V S G IA + Sbjct: 318 EPTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVTFQGNYNATASV-SFDGKKIAVAQ 376 Query: 366 FSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 SG + I +M + L S ++P+++P+ ++++ ++ G LY++ Sbjct: 377 GSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSS 434 Query: 424 NGR-NETLINTPAYASDPQWVGF 445 + R + L+ +P W + Sbjct: 435 DARVRQRLVLADGDVREPAWGPY 457 >gi|83746171|ref|ZP_00943225.1| TolB protein [Ralstonia solanacearum UW551] gi|83727137|gb|EAP74261.1| TolB protein [Ralstonia solanacearum UW551] Length = 434 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 114/419 (27%), Positives = 189/419 (45%), Gaps = 18/419 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 HA + V + S IA F + ++ +V DL RS F+ + + Sbjct: 29 AHAQLNVEISGVGSSQYPIAVAHFQDEAQAPENITAIVRSDLARSGRFSNVDVAGA---V 85 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 P W + GA LV G V + G DR + FRL+D + + G Sbjct: 86 VPESPAPDLGAWKTRGAAALVGGTVTRSG-DRYEIRFRLYDTAKGESLGGLSLTRGEGQL 144 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IYQ + GE+G F +R+ +VS+ L + D DGAN + S + Sbjct: 145 RLAAHEIADFIYQKLMGERGVFATRLSYVSKVG----RHYQLQISDSDGANPQIALTSNE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + VY+ D R + N + AP +S +G+R Sbjct: 201 PII-SPSWSPDGTKVAYVSFESRKPV-VYVHDLLTGR-RAVVSNQKGNNSAPAWSPDGRR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V+ + RLT + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRM 317 Query: 332 QSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G +R++ + P SP G L+A+ G F + V L + Sbjct: 318 PVEGEDAGGAQRVTFKGGYN-TSPRISPDGKLLAYIARVGGAFKLYVQDLSNGDVTGLTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 S ++P+++ +G+ ++++ + G S L ++ +GR +++ +P W FM Sbjct: 377 TSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQILSLQAGQVREPAWGPFM 433 >gi|312962753|ref|ZP_07777241.1| TolB [Pseudomonas fluorescens WH6] gi|311282970|gb|EFQ61563.1| TolB [Pseudomonas fluorescens WH6] Length = 426 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 104/434 (23%), Positives = 203/434 (46%), Gaps = 12/434 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L+++ + + V + S +P+++ + L ++++VS DL+ S Sbjct: 1 MLVVICCMAGIAAADEKNILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIVSDDLRNSG 60 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 + I + + + + F+DW ++GAQ L+ G + G RL++ + L++V + Sbjct: 61 YYAPIPKGNMISQPNQASEVV-FRDWKAVGAQYLMVGNITPAG-GRLQITYTLFNVATEQ 118 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVM 196 Q++ + R +AH ISD ++ +TG KG F++R+L+V+ S + +L Sbjct: 119 QVLTGSVSGTAEQLRDMAHYISDQSFEKLTGIKGAFSTRLLYVTAERFSVDNTRYTLQRS 178 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R ++I NF Sbjct: 179 DYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR-REQITNF 235 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP +S +G R + KD DIY +++ S R+T+ IN + D S I Sbjct: 236 EGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNMASRQITRVTSGPGINTEPFWGKDGSTI 295 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIG 374 F SDR GK Q+Y G +R++ + +P S + F + Sbjct: 296 YFTSDRGGKPQIYKTSVGGGGAERVTFIGNYNA-NPKLSADEKTLVMIHRQDGFTNFRVA 354 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 ++L + + ++ T +P+G +I++ ++ G L + +NGR + T Sbjct: 355 AQDLQRGTVKILTDTNLDESATVAPNGTMVIYATRQQGRG--VLMLVSINGRVRLPLPTA 412 Query: 435 -AYASDPQWVGFMD 447 +P W +++ Sbjct: 413 QGEVREPSWSPYLN 426 >gi|253687643|ref|YP_003016833.1| Tol-Pal system beta propeller repeat protein TolB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259533860|sp|C6DCE7|TOLB_PECCP RecName: Full=Protein tolB; Flags: Precursor gi|251754221|gb|ACT12297.1| Tol-Pal system beta propeller repeat protein TolB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 430 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 99/432 (22%), Positives = 191/432 (44%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + V + +HA V++ + P+ + K+ V +V DL+ S Sbjct: 7 VAVSFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I + Q+ + W +LG +V G+V V ++L D Sbjct: 67 KFNPIDANRMPQQPATASEV-TPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVDTSGNP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + +F + R AHT SD++++ ++G KG F +RI +V ++ G L V Sbjct: 126 GNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N +++ Q L P +S + K+AY T++ ++ T + A +++ + Sbjct: 185 ADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTFESGR--SALVIQTLANGAIRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y ++L S ++T+ N ++ PDS Sbjct: 242 FPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLASGQISQVTDGRSNNTEPTWFPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + SD+ G+ Q+Y + +NG +R++ + + D S G + +G I Sbjct: 302 LAYTSDQAGRPQVYKVNANGGAPQRLTWEGAQNQ-DADVSADGKFLVTVGSNGGAQHISK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + ++L + + P+ +P+G +I+S K+ GS L + +GR + L T Sbjct: 361 LDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|163751257|ref|ZP_02158485.1| tolB protein [Shewanella benthica KT99] gi|161328971|gb|EDQ00045.1| tolB protein [Shewanella benthica KT99] Length = 442 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 108/447 (24%), Positives = 203/447 (45%), Gaps = 23/447 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 L L L + + A + + P+++ + ++S+VV DL Sbjct: 3 TLGKWLFLSLIIVSSPVRAALDIIITEGVDAARPIAVIPFVWQGAGAAPEQISDVVMSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + + Q+ + S +DW+S+GA+ +V G + G D+ V F L D+ Sbjct: 63 IRSGAFKPLDELGLPQRNISSVSQFVAKDWSSIGAEAVVMGSIKPYGNDQYLVTFDLVDL 122 Query: 134 KDRKQ-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + I ++ S A +R+ H ISD +Y+ +TG +G F +R+ +V Sbjct: 123 VKAQMQQGAGPQSNSEYLIDSRETVISAAQFRQYGHRISDLVYEELTGIRGAFLTRLAYV 182 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 L + D DG N + L S + L P +SP+ +K+AY +++++ ++ Sbjct: 183 VVKHGE-KSPYQLMISDYDGYNEQMLLRSSEP-LMSPSWSPDGRKLAYVSFENKKA-EIF 239 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D K + +F + AP FS +GK+ +++ KD +IY +D+ + A +R+TN Sbjct: 240 IQDIYTQSRNK-VSSFNGINGAPVFSPDGKKLALTLSKDGQPEIYVIDIATKALKRVTNH 298 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ AS+ PD ++F S+R G+ Q+Y + +R++ + E + +P G Sbjct: 299 YAIDTEASWFPDGKSLIFTSERGGRPQIYKVTLASGKVQRLTFEGEWNLGG-SIAPDGRS 357 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + F + KF I M + ++L ++P+ +P+G +I+ G L + Sbjct: 358 MIFVNRTNGKFNIARMDLETRFMQILTSTRLDESPSVAPNGTMVIYGTTHQGKQ--VLGA 415 Query: 421 IDLNGRNE-TLINTPAYASDPQWVGFM 446 + +GR + L P W F+ Sbjct: 416 VSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|291281683|ref|YP_003498501.1| Protein tolB precursor [Escherichia coli O55:H7 str. CB9615] gi|290761556|gb|ADD55517.1| Protein tolB precursor [Escherichia coli O55:H7 str. CB9615] Length = 431 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 197/446 (44%), Gaps = 20/446 (4%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGG 63 + + L + +L + + +HA V++ +S P+ + ++ Sbjct: 1 MMKQALRVAFGFLIL-------WASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPE 53 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 + +V+ DL+ S FN + + Q+ + + + W++LG +V G+V Sbjct: 54 DIGGIVAADLRNSGKFNPLDRAHLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGS 112 Query: 124 LRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L D + + + R HT SD++++ +TG KG F +RI +V Sbjct: 113 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVV 172 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ G L V D DG N +++ Q L P +SP+ K+AY T++ + Sbjct: 173 QTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALV 228 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 IQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 288 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++ PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFM 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +G + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLV 405 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 STDGRFKARLPATDGQVKFPAWSPYL 431 >gi|323972027|gb|EGB67247.1| tol-Pal system beta propeller TolB [Escherichia coli TA007] Length = 431 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 197/446 (44%), Gaps = 20/446 (4%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGG 63 + + L + +L + + +HA V++ +S P+ + ++ Sbjct: 1 MMKQALRVAFGFLIL-------WASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPE 53 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 + +V+ DL+ S FN + + Q+ + + + W++LG +V G+V Sbjct: 54 DIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGS 112 Query: 124 LRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L D + + + R HT SD++++ +TG KG F +RI +V Sbjct: 113 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVV 172 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ G L V D DG N +++ Q L P +SP+ K+AY T++ + Sbjct: 173 QTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALV 228 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 IQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 288 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++ PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFM 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +G + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLV 405 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 STDGRFKARLPATDGQVKSPAWSPYL 431 >gi|26246709|ref|NP_752749.1| translocation protein TolB [Escherichia coli CFT073] gi|91209774|ref|YP_539760.1| translocation protein TolB [Escherichia coli UTI89] gi|117622931|ref|YP_851844.1| translocation protein TolB [Escherichia coli APEC O1] gi|170683440|ref|YP_001742851.1| translocation protein TolB [Escherichia coli SMS-3-5] gi|209917991|ref|YP_002292075.1| translocation protein TolB [Escherichia coli SE11] gi|227884293|ref|ZP_04002098.1| TolB protein [Escherichia coli 83972] gi|237707297|ref|ZP_04537778.1| translocation protein TolB [Escherichia sp. 3_2_53FAA] gi|261224451|ref|ZP_05938732.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK2000] gi|261254557|ref|ZP_05947090.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK966] gi|300816390|ref|ZP_07096612.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 107-1] gi|300822971|ref|ZP_07103106.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 119-7] gi|300900747|ref|ZP_07118896.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 198-1] gi|300906999|ref|ZP_07124668.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 84-1] gi|300918401|ref|ZP_07135001.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 115-1] gi|300926144|ref|ZP_07141957.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 182-1] gi|300929454|ref|ZP_07144922.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 187-1] gi|300937787|ref|ZP_07152584.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 21-1] gi|300947179|ref|ZP_07161389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 116-1] gi|300957689|ref|ZP_07169878.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 175-1] gi|300992345|ref|ZP_07179868.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 200-1] gi|300993166|ref|ZP_07180249.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 45-1] gi|301020788|ref|ZP_07184852.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 69-1] gi|301027078|ref|ZP_07190450.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 196-1] gi|301051340|ref|ZP_07198163.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 185-1] gi|301305228|ref|ZP_07211326.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 124-1] gi|301327933|ref|ZP_07221104.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 78-1] gi|301648045|ref|ZP_07247812.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 146-1] gi|309797455|ref|ZP_07691847.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 145-7] gi|331656759|ref|ZP_08357721.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA206] gi|332282411|ref|ZP_08394824.1| translocation protein TolB [Shigella sp. D9] gi|26107108|gb|AAN79292.1|AE016757_196 TolB protein precursor [Escherichia coli CFT073] gi|148020|gb|AAA24684.1| tolB [Escherichia coli] gi|91071348|gb|ABE06229.1| periplasmic protein involved in the tonB-independent uptake of group A colicins [Escherichia coli UTI89] gi|115512055|gb|ABJ00130.1| TolB protein precursor [Escherichia coli APEC O1] gi|170521158|gb|ACB19336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli SMS-3-5] gi|209911250|dbj|BAG76324.1| TolB protein [Escherichia coli SE11] gi|226898507|gb|EEH84766.1| translocation protein TolB [Escherichia sp. 3_2_53FAA] gi|227839045|gb|EEJ49511.1| TolB protein [Escherichia coli 83972] gi|299879412|gb|EFI87623.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 196-1] gi|300297002|gb|EFJ53387.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 185-1] gi|300305362|gb|EFJ59882.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 200-1] gi|300315607|gb|EFJ65391.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 175-1] gi|300355806|gb|EFJ71676.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 198-1] gi|300398434|gb|EFJ81972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 69-1] gi|300401220|gb|EFJ84758.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 84-1] gi|300406696|gb|EFJ90234.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 45-1] gi|300414464|gb|EFJ97774.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 115-1] gi|300417843|gb|EFK01154.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 182-1] gi|300453165|gb|EFK16785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 116-1] gi|300457198|gb|EFK20691.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 21-1] gi|300462563|gb|EFK26056.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 187-1] gi|300524512|gb|EFK45581.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 119-7] gi|300531080|gb|EFK52142.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 107-1] gi|300839540|gb|EFK67300.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 124-1] gi|300845576|gb|EFK73336.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 78-1] gi|301073871|gb|EFK88677.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 146-1] gi|308118979|gb|EFO56241.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 145-7] gi|315257659|gb|EFU37627.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 85-1] gi|315287145|gb|EFU46557.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 110-3] gi|315292654|gb|EFU52006.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 153-1] gi|315299257|gb|EFU58509.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 16-3] gi|323938279|gb|EGB34537.1| tol-Pal system beta propeller protein TolB [Escherichia coli E1520] gi|323946994|gb|EGB43008.1| tol-Pal system beta propeller protein TolB [Escherichia coli H120] gi|323963121|gb|EGB58691.1| tol-Pal system beta propeller TolB [Escherichia coli H489] gi|324009566|gb|EGB78785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 57-2] gi|324010463|gb|EGB79682.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 60-1] gi|324020352|gb|EGB89571.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli MS 117-3] gi|331055007|gb|EGI27016.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA206] gi|332104763|gb|EGJ08109.1| translocation protein TolB [Shigella sp. D9] Length = 431 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 197/446 (44%), Gaps = 20/446 (4%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGG 63 + + L + +L + + +HA V++ +S P+ + ++ Sbjct: 1 MMKQALRVAFGFLIL-------WASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPE 53 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 + +V+ DL+ S FN + + Q+ + + + W++LG +V G+V Sbjct: 54 DIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGS 112 Query: 124 LRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 V ++L D + + + R HT SD++++ +TG KG F +RI +V Sbjct: 113 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVV 172 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ G L V D DG N +++ Q L P +SP+ K+AY T++ + Sbjct: 173 QTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALV 228 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ Sbjct: 229 IQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 288 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++ PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFM 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +G + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLV 405 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 STDGRFKARLPATDGQVKFPAWSPYL 431 >gi|207728189|ref|YP_002256583.1| protein tolb precursor [Ralstonia solanacearum MolK2] gi|207744076|ref|YP_002260468.1| protein tolb precursor [Ralstonia solanacearum IPO1609] gi|206591434|emb|CAQ57046.1| protein tolb precursor [Ralstonia solanacearum MolK2] gi|206595480|emb|CAQ62407.1| protein tolb precursor [Ralstonia solanacearum IPO1609] Length = 432 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 114/419 (27%), Positives = 189/419 (45%), Gaps = 18/419 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 HA + V + S IA F + ++ +V DL RS F+ + + Sbjct: 27 AHAQLNVEISGVGSSQYPIAVAHFQDEAQAPENITAIVRSDLARSGRFSNVDVAGA---V 83 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 P W + GA LV G V + G DR + FRL+D + + G Sbjct: 84 VPESPAPDLGAWKTRGAAALVGGTVTRSG-DRYEIRFRLYDTAKGESLGGLSLTRGEGQL 142 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IYQ + GE+G F +R+ +VS+ L + D DGAN + S + Sbjct: 143 RLAAHEIADFIYQKLMGERGVFATRLSYVSKVG----RHYQLQISDSDGANPQIALTSNE 198 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + VY+ D R + N + AP +S +G+R Sbjct: 199 PII-SPSWSPDGTKVAYVSFESRKPV-VYVHDLLTGR-RAVVSNQKGNNSAPAWSPDGRR 255 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ +D IY V+ + RLT + I+ S+SPD I F SDR G Q+Y M Sbjct: 256 VAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQVYRM 315 Query: 332 QSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G +R++ + P SP G L+A+ G F + V L + Sbjct: 316 PVEGEDAGGAQRVTFKGGYN-TSPRISPDGKLLAYIARVGGAFKLYVQDLSNGDVTGLTD 374 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 S ++P+++ +G+ ++++ + G S L ++ +GR +++ +P W FM Sbjct: 375 TSYDESPSFAANGKFILYATRVGGR--SVLAAVSTDGRTRQILSLQAGQVREPAWGPFM 431 >gi|170723154|ref|YP_001750842.1| translocation protein TolB [Pseudomonas putida W619] gi|169761157|gb|ACA74473.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas putida W619] Length = 423 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 103/431 (23%), Positives = 204/431 (47%), Gaps = 12/431 (2%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 ++ + + V + S +P+++ L +++++ DL+ S ++ Sbjct: 1 MLCCVAGMAMAEEKNILVTSGSDRATPIAVVPFGLQGGSVLPEDMADIIGNDLRNSGYYS 60 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 I + + + T + F+DW +LGAQ ++ G ++ G RL+V++ L++V +Q++ Sbjct: 61 PIPRQNMISQPTQASEVI-FRDWKALGAQYVMVGSIVPSG-GRLQVQYALFNVATEQQVL 118 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGIIKNSLCVMDRD 199 S R ++H I+D ++ +TG KG F++R+L+V+ + + +L D D Sbjct: 119 TGSVAGSVDQLRDMSHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDYD 178 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 GA L SR+ I PRF+P+ +++AY +++ + R+++ R +++ NF + Sbjct: 179 GARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFIQHIDTGR-REQVTNFEGL 235 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G R + KD DIY +++ S R+T IN + D + + F Sbjct: 236 NGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFT 295 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMK 377 SDR GK Q+Y +G +R++ + +P S + F + Sbjct: 296 SDRGGKPQIYKQSVSGGSAERVTFVGNYNA-NPKLSADEKTLVMIHRQQGFTNFKVAAQD 354 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AY 436 ++L E S ++PT +P+G LI++ ++ G L + LNGR + T Sbjct: 355 LQRGSVKILSETSLDESPTVAPNGTMLIYATRQQGRG--VLMLVSLNGRVRLPLPTAQGE 412 Query: 437 ASDPQWVGFMD 447 +P W +++ Sbjct: 413 VREPSWSPYLN 423 >gi|261278785|pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In Complex With Tolb Reveals Important Differences In The Recruitment Of The Common Tolb Translocation Portal Used By Group A Colicins Length = 438 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|237809442|ref|YP_002893882.1| translocation protein TolB [Tolumonas auensis DSM 9187] gi|237501703|gb|ACQ94296.1| Tol-Pal system beta propeller repeat protein TolB [Tolumonas auensis DSM 9187] Length = 431 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 115/436 (26%), Positives = 200/436 (45%), Gaps = 15/436 (3%) Query: 19 LLLVLIGGF-FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 LL+ L+G F S A + + S +A F S L ++ V+S DL RS Sbjct: 4 LLMALVGWLWFSQSAMAELDILVTGGMDSGRPVAIVPFKSDGSLPEDLANVISSDLMRSG 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F +S++S ++ I + W++LG + +V G V G + RV F L DV K Sbjct: 64 KFTPLSRNSMPEQPAQSGQI-NYPTWSALGTEAVVVGHVESAGAGQYRVTFELVDVARGK 122 Query: 138 -----QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + + RK AH ISD +Y+ +TGE+G F + IL+V+ S + Sbjct: 123 DGGNAVLDSRVATVTAKQLRKYAHRISDIVYEKLTGERGAFLTSILYVTVDR-SQAMPYR 181 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D DG N R L SR+ I P +SP+ +++AY +++ + +++ D Sbjct: 182 LMLADYDGYNERMLLRSREPI-MSPTWSPDGRRIAYVSFE-KRTPAIFIQDLYSQARSML 239 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + AP +S +G+ + + KD DIY+VD+ S RLT+ I+ S+S D Sbjct: 240 VA-LPGINGAPSWSPDGRSMAVVLSKDGQPDIYTVDIGSRRLNRLTSDQAIDTEPSWSAD 298 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F S+R G+ Q+Y + R++ + +++ +P G + + Sbjct: 299 GRSVFFTSERGGRPQIYKVDVASHSASRVTWEGDSNLGASA-TPDGKALVMVSRVQGSYR 357 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLI 431 I +G +L S ++P+ +P+G +I+S G G L + +GR + L Sbjct: 358 IARQDLNGGGVYVLTSSSLDESPSVAPNGSMIIYSTVYQGRQGLAL--VSADGRFKANLP 415 Query: 432 NTPAYASDPQWVGFMD 447 + P W F++ Sbjct: 416 SAKGEVRSPAWSPFLN 431 >gi|114330316|ref|YP_746538.1| translocation protein TolB [Nitrosomonas eutropha C91] gi|114307330|gb|ABI58573.1| TolB, N-terminal domain protein [Nitrosomonas eutropha C91] Length = 423 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 107/434 (24%), Positives = 196/434 (45%), Gaps = 14/434 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ L V + + T + A + + + + IA F L +S +VS D Sbjct: 1 MRNFLYCTGVFLLLWMNTPLQAALDIEIFGGGANRMPIAVAPFNGEKGLPQDISAIVSAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+RS +F L+ + + DW GA LV G R+ ++FRL D Sbjct: 61 LERSGIFKLVDPLGLTSQ-----EPVSYVDWLGRGASALVIGSTSMLPDGRVDIQFRLLD 115 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + Q+ G + R AH I+D +Y+++T E G F++RI FV + + + Sbjct: 116 VAKQVQLTGFSGTVTIEQLRAFAHRIADIVYEALTNEPGVFSTRIAFVRKQGS----RYA 171 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG N R L + I+ P +SP+ K+AY +++ + V + R K Sbjct: 172 LQVSDYDGFNARSLIEYTEPII-SPAWSPDGSKIAYTSFEKKKP--VVYVQALATRERKV 228 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + NF+ AP +S +G + + + IY ++ + +R++ + I+ S+SPD Sbjct: 229 VANFKGSNSAPAWSPDGGKLAVVLTLHGGSQIYLINADGSGLQRISQSPGIDTEPSFSPD 288 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++F SDR G Q+Y M +G +R++ + + + P +S G + + +F+ Sbjct: 289 GKWLIFTSDRGGSPQIYRMPVSGGAAERLTFEGDYNV-SPRYSSDGKRFVYIHRNSGRFS 347 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + V Q +LL + S ++P++SP+ R ++++ + G + S D R+ Sbjct: 348 VAVQDLSTRQMQLLTDSSFDESPSFSPNSRMVLYTTEVSGRGILSIVSSDGQTRS-RFSQ 406 Query: 433 TPAYASDPQWVGFM 446 + W + Sbjct: 407 EAGDVREAVWGPLL 420 >gi|170727076|ref|YP_001761102.1| translocation protein TolB [Shewanella woodyi ATCC 51908] gi|226705894|sp|B1KIF6|TOLB_SHEWM RecName: Full=Protein tolB; Flags: Precursor gi|169812423|gb|ACA87007.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella woodyi ATCC 51908] Length = 442 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 109/447 (24%), Positives = 200/447 (44%), Gaps = 23/447 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 L L+L A + + P+++ + ++S+VV DL Sbjct: 3 TLGKWLLLGLVVMSMPARAALDIVITEGVDAARPIAVIPFVWQGQGPAPQQISDVVMSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS FN I + Q+ S ++W+++ A+ +V G V G D+ V F L D+ Sbjct: 63 ARSGTFNPIDELGLPQRNIAKVSQFVAKEWSNVAAEAVVMGSVKPMGPDQFLVNFELVDL 122 Query: 134 KDRKQ-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + I + S +R+ H ISD +Y+ +TG +G F +RI +V Sbjct: 123 VKAQMQAGNGPQSSSEYLIDSSEVVISAEQFRQYGHRISDIVYEKLTGIRGAFLTRIAYV 182 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 L + D DG N + L S + L P +SP+ K+AY +++++ V+ Sbjct: 183 VVKHGE-KSPYHLMISDYDGHNEKMLLRSPEP-LMSPSWSPDGSKLAYVSFENKKA-EVF 239 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + + +A +I ++ + AP FS +GK+ +++ +D +IY VD+ + A +R+TN Sbjct: 240 VQNIYT-QARAKITSYDGINGAPVFSPDGKKLALTLSRDGQPEIYVVDIDTKALKRVTNH 298 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ AS+ PD ++F S+R G+ Q+Y + +R++ + E + SP G Sbjct: 299 YAIDTEASWFPDGKSLIFTSERGGRPQIYKVTLASGKVQRMTFEGEWNLGG-SISPDGRS 357 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + F + KF I M + ++L ++P+ +P+G +I+ G L + Sbjct: 358 MIFVNRTNGKFNIARMDLETRFVQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--VLAA 415 Query: 421 IDLNGRNE-TLINTPAYASDPQWVGFM 446 + +GR + L P W F+ Sbjct: 416 VSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|259909070|ref|YP_002649426.1| translocation protein TolB [Erwinia pyrifoliae Ep1/96] gi|224964692|emb|CAX56209.1| Protein TolB (Translocation of group A colicins) [Erwinia pyrifoliae Ep1/96] Length = 430 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 195/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + +++ +L V HA V++ P+ + K+ Sbjct: 1 MKQAFRVALSVLMLFV-------AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T+ + + W +LG ++ G+V Sbjct: 54 IGGIVAADLRNSGKFNPIDRARLPQQPTSVAEV-QPAAWTALGIDAVIVGQVQPGADGSY 112 Query: 125 RVEFRLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D ++ + F W R AHT SD+ ++ +T KG F +RI +V + Sbjct: 113 TVSYQLVDTSGNPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ KVAY T++ ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + Sbjct: 229 QTLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ D + D S G + Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWDGAQNQ-DADVSSDGKSMV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + L + + P+ +P+G +I+S + GS L + Sbjct: 348 MISTNSGAQHVARQDLVTGAVQQLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|323170861|gb|EFZ56511.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli LT-68] Length = 430 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 197/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + +++HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASALHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|291085672|ref|ZP_06353704.2| Tol-Pal system beta propeller repeat protein TolB [Citrobacter youngae ATCC 29220] gi|291070094|gb|EFE08203.1| Tol-Pal system beta propeller repeat protein TolB [Citrobacter youngae ATCC 29220] Length = 431 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 97/439 (22%), Positives = 188/439 (42%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPGTAAEV-QPAAWSALGIDAVVVGQVTPNPDGSYSVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + + Sbjct: 296 WFPDSQNLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSAN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|326795239|ref|YP_004313059.1| protein tolB [Marinomonas mediterranea MMB-1] gi|326546003|gb|ADZ91223.1| Protein tolB [Marinomonas mediterranea MMB-1] Length = 432 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 101/436 (23%), Positives = 208/436 (47%), Gaps = 9/436 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVS 70 MK+ L L+ + S+ A + + S + IA F + L ++++V Sbjct: 1 MKLFKPLFLMFVMVITSQSVRAQLVIEITSGADQLLPIAVVPFEYSGANPLPEDIAQIVE 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS VF I + S + ++ D++ ++DW L A+ ++ G V+ +V F L Sbjct: 61 SDLLRSGVFETIPRASMLSEPSSSDNV-FYRDWRILKAEYILVGAVLNASNGNYQVAFEL 119 Query: 131 WDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +V ++++ K+ +P+S+R AH ISD +YQ++TG KG F++RIL+V+ Sbjct: 120 LNVNTQQRVGNKEVISVTPSSFRDAAHFISDKVYQALTGIKGAFSTRILYVTAEGDRSAP 179 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG + + S++ I P +S N + + Y + D +++ + + Sbjct: 180 NYKLQVADADGHRAQVIVESKEPI-LSPSWSRNGRFITYVMFRDRRP-NIFIQELATGKR 237 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + ++ + AP +S +GK+ + + KD ++Y +D+ + +R+TN I+ S+ Sbjct: 238 SK-VAQYKGLNGAPAWSPDGKKLALVLSKDNNPEVYVLDIATQKLDRMTNHYAIDTEPSW 296 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD I+F SDR G Q+Y + + +R++ + +++ +P G + + Sbjct: 297 EPDGKGIIFTSDRGGNPQIYRLDVKSKEVERVTFEGDSNTRA-RMTPDGRYLVTVQKDSG 355 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + I + + +L + ++P+ +P+G ++++ + + S+D Sbjct: 356 NYHIALQDMKNGRVTILTQTYLDESPSIAPNGSMVMYATTEGNKGILSVVSVDGL-VKYK 414 Query: 430 LINTPAYASDPQWVGF 445 L ++ +P W + Sbjct: 415 LPSSNGDVREPAWSPY 430 >gi|70732083|ref|YP_261839.1| translocation protein TolB [Pseudomonas fluorescens Pf-5] gi|119371050|sp|Q4K7E4|TOLB_PSEF5 RecName: Full=Protein tolB; Flags: Precursor gi|68346382|gb|AAY93988.1| tolB protein [Pseudomonas fluorescens Pf-5] Length = 433 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 207/441 (46%), Gaps = 14/441 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M+ L +LV+I + + S +P+++ + L +++++ Sbjct: 1 MRNLLRGMLVVICCMAGIAAADEKNILVTSGSDRATPIAVVPFGWQGGSVLPDDMAQIIG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G ++ G RL+V++ L Sbjct: 61 DDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGSIVPAG-GRLQVQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ S R ++H ISD ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGSVSGSVDQLRDMSHYISDQSFEKLTGIKGAFSTRLLYVTAERFSVNNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G R + KD DIY +++ S R+T+ IN + Sbjct: 236 REQITNFEGLNGAPAWSPDGTRLAFVLSKDGNPDIYVMNMASRQISRVTSGPGINTEPFW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S I F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTIYFTSDRGGKPQVYKSNINGGGAERVTFIGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + ++L + + ++ T +P+G +I++ ++ G L + +NGR Sbjct: 355 FTNFRVAAQDLQRGSVKILTDTNLDESATVAPNGTMVIYATRQQGRG--VLMLVSINGRV 412 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + T +P W +++ Sbjct: 413 RLPLPTAQGEVREPSWSPYLN 433 >gi|269967692|ref|ZP_06181742.1| translocation protein TolB precursor [Vibrio alginolyticus 40B] gi|269827779|gb|EEZ82063.1| translocation protein TolB precursor [Vibrio alginolyticus 40B] Length = 450 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 101/458 (22%), Positives = 194/458 (42%), Gaps = 32/458 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L + ++ +A +++ + P+++ K+ L VS V++ Sbjct: 1 MIRRLLLGMFVLFSSMTNVANAALELVITDGIDSARPIAVVPFKWEGTQALPTDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + F W +LG L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPFSESEV-NFDAWTNLGVDALLTGSIKQNDQGDYVINYQL 119 Query: 131 WDVKDRKQIIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGE 169 D+ + GK R+ AH ISD +Y+ +TG+ Sbjct: 120 VDIVRGQLTGGKSKALGSDGELVLSKDHVLFNKVATVQGPRMREYAHRISDLVYEQLTGD 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L V D DG N R + S+ Q L P +SP+ +K+AY Sbjct: 180 RGAFMTRIAYVVVN-DKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +++M+ ++I ++ APRFS +G + I + K ++ +Y+ DL Sbjct: 238 SFQNGQA-EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGNKLAIVLSKTGSLHVYTFDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + ++T N + PD ++F SDR GK Q+Y + R++ + Sbjct: 296 NTRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P G + S F + + ++L + ++P+ +P+G +++S Sbjct: 356 GGQ-ITPDGRFLVMVNRSNAGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSI 414 Query: 410 KDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 415 YNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL 450 >gi|331672262|ref|ZP_08373053.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA280] gi|331070457|gb|EGI41821.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA280] Length = 430 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|209517620|ref|ZP_03266458.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. H160] gi|209501916|gb|EEA01934.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. H160] Length = 430 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 106/444 (23%), Positives = 200/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA T F + +VS Sbjct: 3 LMTKLGLRTLVATCLIAVGG----AANAQLNVLVTGVGSTQFPIATTNFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S + W + GA V G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGS---TPVSETDSVDLGAWKAKGANAFVAGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGNRGAFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---KYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRV-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 +YSPD I F SDR G Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PTYSPDGQWIYFTSDRGGAPQIYKMPAQGESAGSAQRVTFTGSYN-TSPRVSPDGKELAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGAFKLYLQDLQGGSATGLTDTAHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGNVREPSWGPFM 429 >gi|209776394|gb|ACI86509.1| periplasmic protein TolB [Escherichia coli] Length = 430 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRAHLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|261822330|ref|YP_003260436.1| translocation protein TolB [Pectobacterium wasabiae WPP163] gi|261606343|gb|ACX88829.1| Tol-Pal system beta propeller repeat protein TolB [Pectobacterium wasabiae WPP163] Length = 430 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/432 (22%), Positives = 190/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + V + +HA V++ + P+ + K+ V +V DL+ S Sbjct: 7 VAVSFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I + Q+ + W +LG +V G+V V ++L D Sbjct: 67 KFNPIDANRMPQQPATASEV-TPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVDTSGNP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + +F + R AHT SD++++ ++G KG F +RI +V ++ G L V Sbjct: 126 GNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N +++ Q L P +S + K+AY T++ ++ T + A +++ + Sbjct: 185 ADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTFESGR--SALVIQTLANGAIRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y ++L S ++T+ N ++ PDS Sbjct: 242 FPRHNGAPSFSPDGNKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPTWFPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + SD+ G+ Q+Y + NG +R++ + + D S G + +G I Sbjct: 302 LAYTSDQAGRPQVYKVNVNGGAPQRVTWEGSQNQ-DSDVSADGKFLVTVGSNGGAQHISK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + ++L + + P+ +P+G +I+S K+ GS L + +GR + L T Sbjct: 361 LDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|157146634|ref|YP_001453953.1| translocation protein TolB [Citrobacter koseri ATCC BAA-895] gi|157083839|gb|ABV13517.1| hypothetical protein CKO_02400 [Citrobacter koseri ATCC BAA-895] Length = 431 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 96/439 (21%), Positives = 188/439 (42%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + ++ + +V Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGIVG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPGTAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + + Sbjct: 296 WFPDSQNLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSAN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|325498077|gb|EGC95936.1| translocation protein TolB [Escherichia fergusonii ECD227] Length = 431 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 192/439 (43%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +VS Sbjct: 1 MMKQALRVAFGFLMLWAAMLHAEVRIVIDGGVDSGRPIGVVPFKWAGPGAAPEDIGGIVS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++L +V G+V V ++L Sbjct: 61 DDLRYSGKFNPLDRARLPQQPASAQEV-QPAAWSALAIDAVVVGQVTPNPDGSYNVAYQL 119 Query: 131 WDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D ++ + F W R AHT+SD++++ +TG KG F +R+ +V ++ G Sbjct: 120 VDTGGAPGTVLAQNSFKVNKQWLRYAAHTVSDEVFEKLTGIKGAFRTRLAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N ++ Q L P +SP+ K+AY T++ V + T + Sbjct: 179 FPYELRVSDYDGYNP-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSELV--IQTLANG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 236 AIRKVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + G Sbjct: 296 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGTQNQ-DADVSSDGKFMVMVSSDG 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 K I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GKQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|15800456|ref|NP_286468.1| translocation protein TolB [Escherichia coli O157:H7 EDL933] gi|15830029|ref|NP_308802.1| translocation protein TolB [Escherichia coli O157:H7 str. Sakai] gi|16128715|ref|NP_415268.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655] gi|30062097|ref|NP_836268.1| translocation protein TolB [Shigella flexneri 2a str. 2457T] gi|74311264|ref|YP_309683.1| translocation protein TolB [Shigella sonnei Ss046] gi|89107598|ref|AP_001378.1| periplasmic protein [Escherichia coli str. K-12 substr. W3110] gi|110640948|ref|YP_668676.1| translocation protein TolB [Escherichia coli 536] gi|157154962|ref|YP_001461901.1| translocation protein TolB [Escherichia coli E24377A] gi|168779235|ref|ZP_02804242.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4076] gi|168786906|ref|ZP_02811913.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC869] gi|170020915|ref|YP_001725869.1| translocation protein TolB [Escherichia coli ATCC 8739] gi|170080407|ref|YP_001729727.1| periplasmic protein [Escherichia coli str. K-12 substr. DH10B] gi|188496422|ref|ZP_03003692.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli 53638] gi|189402960|ref|ZP_03006911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4486] gi|208808867|ref|ZP_03251204.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4206] gi|208815738|ref|ZP_03256917.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4045] gi|209399861|ref|YP_002269374.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4115] gi|215485762|ref|YP_002328193.1| translocation protein TolB [Escherichia coli O127:H6 str. E2348/69] gi|217324392|ref|ZP_03440476.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. TW14588] gi|218557653|ref|YP_002390566.1| translocation protein TolB [Escherichia coli S88] gi|218688531|ref|YP_002396743.1| translocation protein TolB [Escherichia coli ED1a] gi|218694164|ref|YP_002401831.1| translocation protein TolB [Escherichia coli 55989] gi|218699112|ref|YP_002406741.1| translocation protein TolB [Escherichia coli IAI39] gi|218704067|ref|YP_002411586.1| translocation protein TolB [Escherichia coli UMN026] gi|238900005|ref|YP_002925801.1| periplasmic protein [Escherichia coli BW2952] gi|253774289|ref|YP_003037120.1| translocation protein TolB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160810|ref|YP_003043918.1| translocation protein TolB [Escherichia coli B str. REL606] gi|254791897|ref|YP_003076734.1| translocation protein TolB [Escherichia coli O157:H7 str. TW14359] gi|256021184|ref|ZP_05435049.1| translocation protein TolB [Shigella sp. D9] gi|256023657|ref|ZP_05437522.1| translocation protein TolB [Escherichia sp. 4_1_40B] gi|260842946|ref|YP_003220724.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009] gi|260853975|ref|YP_003227866.1| periplasmic protein TolB [Escherichia coli O26:H11 str. 11368] gi|260866871|ref|YP_003233273.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128] gi|293403995|ref|ZP_06647989.1| tolB [Escherichia coli FVEC1412] gi|293409124|ref|ZP_06652700.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B354] gi|293414025|ref|ZP_06656674.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B185] gi|293433008|ref|ZP_06661436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B088] gi|297520453|ref|ZP_06938839.1| translocation protein TolB [Escherichia coli OP50] gi|298379775|ref|ZP_06989380.1| tolB [Escherichia coli FVEC1302] gi|306812853|ref|ZP_07447046.1| translocation protein TolB [Escherichia coli NC101] gi|307137353|ref|ZP_07496709.1| translocation protein TolB [Escherichia coli H736] gi|307314795|ref|ZP_07594389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli W] gi|312965176|ref|ZP_07779413.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 2362-75] gi|312970819|ref|ZP_07784998.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1827-70] gi|331641241|ref|ZP_08342376.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H736] gi|331645891|ref|ZP_08346994.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M605] gi|331651748|ref|ZP_08352767.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M718] gi|331662100|ref|ZP_08363023.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA143] gi|331667107|ref|ZP_08367972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA271] gi|331676422|ref|ZP_08377119.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H591] gi|331682170|ref|ZP_08382792.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H299] gi|67473560|sp|P0A855|TOLB_ECOLI RecName: Full=Protein tolB; Flags: Precursor gi|67473563|sp|P0A856|TOLB_ECOL6 RecName: Full=Protein tolB; Flags: Precursor gi|67473564|sp|P0A857|TOLB_ECO57 RecName: Full=Protein tolB; Flags: Precursor gi|118574579|sp|Q0TJV4|TOLB_ECOL5 RecName: Full=Protein tolB; Flags: Precursor gi|118574580|sp|Q1REI5|TOLB_ECOUT RecName: Full=Protein tolB; Flags: Precursor gi|119371062|sp|Q3Z464|TOLB_SHISS RecName: Full=Protein tolB; Flags: Precursor gi|166988075|sp|A7ZJC2|TOLB_ECO24 RecName: Full=Protein tolB; Flags: Precursor gi|189035982|sp|B1IXY9|TOLB_ECOLC RecName: Full=Protein tolB; Flags: Precursor gi|226705876|sp|B7MFZ3|TOLB_ECO45 RecName: Full=Protein tolB; Flags: Precursor gi|226705877|sp|B5YRE4|TOLB_ECO5E RecName: Full=Protein tolB; Flags: Precursor gi|226705878|sp|B7NMV9|TOLB_ECO7I RecName: Full=Protein tolB; Flags: Precursor gi|226705880|sp|B1X6S1|TOLB_ECODH RecName: Full=Protein tolB; Flags: Precursor gi|226705881|sp|B7N9Y9|TOLB_ECOLU RecName: Full=Protein tolB; Flags: Precursor gi|254764839|sp|B7ULM0|TOLB_ECO27 RecName: Full=Protein tolB; Flags: Precursor gi|254764840|sp|B7LAE7|TOLB_ECO55 RecName: Full=Protein tolB; Flags: Precursor gi|254764841|sp|B7MPN1|TOLB_ECO81 RecName: Full=Protein tolB; Flags: Precursor gi|259533852|sp|C4ZWL5|TOLB_ECOBW RecName: Full=Protein tolB; Flags: Precursor gi|12513673|gb|AAG55076.1|AE005252_12 periplasmic protein involved in the tonb-independent uptake of group A colicins [Escherichia coli O157:H7 str. EDL933] gi|1786961|gb|AAC73834.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655] gi|13360234|dbj|BAB34198.1| periplasmic protein TolB [Escherichia coli O157:H7 str. Sakai] gi|30040341|gb|AAP16074.1| periplasmic protein [Shigella flexneri 2a str. 2457T] gi|73854741|gb|AAZ87448.1| periplasmic protein [Shigella sonnei Ss046] gi|85674752|dbj|BAA35406.2| periplasmic protein [Escherichia coli str. K12 substr. W3110] gi|110342540|gb|ABG68777.1| TolB protein precursor [Escherichia coli 536] gi|157076992|gb|ABV16700.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli E24377A] gi|169755843|gb|ACA78542.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli ATCC 8739] gi|169888242|gb|ACB01949.1| periplasmic protein [Escherichia coli str. K-12 substr. DH10B] gi|188491621|gb|EDU66724.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli 53638] gi|189002974|gb|EDU71960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4076] gi|189363589|gb|EDU82008.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4486] gi|189373020|gb|EDU91436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC869] gi|208728668|gb|EDZ78269.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4206] gi|208732386|gb|EDZ81074.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4045] gi|209161261|gb|ACI38694.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4115] gi|209776388|gb|ACI86506.1| periplasmic protein TolB [Escherichia coli] gi|209776390|gb|ACI86507.1| periplasmic protein TolB [Escherichia coli] gi|209776392|gb|ACI86508.1| periplasmic protein TolB [Escherichia coli] gi|209776396|gb|ACI86510.1| periplasmic protein TolB [Escherichia coli] gi|215263834|emb|CAS08172.1| periplasmic protein TolB [Escherichia coli O127:H6 str. E2348/69] gi|217320613|gb|EEC29037.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. TW14588] gi|218350896|emb|CAU96594.1| periplasmic protein [Escherichia coli 55989] gi|218364422|emb|CAR02102.1| periplasmic protein [Escherichia coli S88] gi|218369098|emb|CAR16852.1| periplasmic protein [Escherichia coli IAI39] gi|218426095|emb|CAR06913.1| periplasmic protein [Escherichia coli ED1a] gi|218431164|emb|CAR12040.1| periplasmic protein [Escherichia coli UMN026] gi|222032476|emb|CAP75215.1| Protein tolB [Escherichia coli LF82] gi|238862004|gb|ACR64002.1| periplasmic protein [Escherichia coli BW2952] gi|242376502|emb|CAQ31206.1| tolB, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4 Transport System and The Colicin A Import System [Escherichia coli BL21(DE3)] gi|253325333|gb|ACT29935.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972711|gb|ACT38382.1| translocation protein TolB precursor [Escherichia coli B str. REL606] gi|253976905|gb|ACT42575.1| translocation protein TolB precursor [Escherichia coli BL21(DE3)] gi|254591297|gb|ACT70658.1| periplasmic protein [Escherichia coli O157:H7 str. TW14359] gi|257752624|dbj|BAI24126.1| periplasmic protein TolB [Escherichia coli O26:H11 str. 11368] gi|257758093|dbj|BAI29590.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009] gi|257763227|dbj|BAI34722.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128] gi|260450106|gb|ACX40528.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli DH1] gi|281177883|dbj|BAI54213.1| TolB protein [Escherichia coli SE15] gi|281599944|gb|ADA72928.1| Protein tolB precursor [Shigella flexneri 2002017] gi|284920527|emb|CBG33589.1| colicin import protein [Escherichia coli 042] gi|291323827|gb|EFE63249.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B088] gi|291428581|gb|EFF01606.1| tolB [Escherichia coli FVEC1412] gi|291434083|gb|EFF07056.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B185] gi|291469592|gb|EFF12076.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli B354] gi|294492013|gb|ADE90769.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli IHE3034] gi|298279473|gb|EFI20981.1| tolB [Escherichia coli FVEC1302] gi|305853616|gb|EFM54055.1| translocation protein TolB [Escherichia coli NC101] gi|306905693|gb|EFN36221.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli W] gi|307552591|gb|ADN45366.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli ABU 83972] gi|307627846|gb|ADN72150.1| translocation protein TolB [Escherichia coli UM146] gi|309700962|emb|CBJ00259.1| colicin import protein [Escherichia coli ETEC H10407] gi|310336580|gb|EFQ01747.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1827-70] gi|312290267|gb|EFR18150.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 2362-75] gi|312945264|gb|ADR26091.1| translocation protein TolB [Escherichia coli O83:H1 str. NRG 857C] gi|313649617|gb|EFS14041.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 2a str. 2457T] gi|315059983|gb|ADT74310.1| periplasmic protein [Escherichia coli W] gi|315135397|dbj|BAJ42556.1| tolB [Escherichia coli DH1] gi|315614616|gb|EFU95258.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 3431] gi|320179419|gb|EFW54376.1| translocation protein TolB [Shigella boydii ATCC 9905] gi|320193145|gb|EFW67785.1| translocation protein TolB [Escherichia coli O157:H7 str. EC1212] gi|320198140|gb|EFW72744.1| translocation protein TolB [Escherichia coli EC4100B] gi|320637998|gb|EFX07767.1| translocation protein TolB [Escherichia coli O157:H7 str. G5101] gi|320643394|gb|EFX12574.1| translocation protein TolB [Escherichia coli O157:H- str. 493-89] gi|320648688|gb|EFX17324.1| translocation protein TolB [Escherichia coli O157:H- str. H 2687] gi|320654326|gb|EFX22379.1| translocation protein TolB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659958|gb|EFX27500.1| translocation protein TolB [Escherichia coli O55:H7 str. USDA 5905] gi|320664784|gb|EFX31922.1| translocation protein TolB [Escherichia coli O157:H7 str. LSU-61] gi|323153744|gb|EFZ39991.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli EPECa14] gi|323158792|gb|EFZ44805.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli E128010] gi|323163899|gb|EFZ49709.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei 53G] gi|323180020|gb|EFZ65576.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1180] gi|323185099|gb|EFZ70465.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli 1357] gi|323191085|gb|EFZ76350.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli RN587/1] gi|323379457|gb|ADX51725.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli KO11] gi|323942963|gb|EGB39127.1| tol-Pal system beta propeller TolB [Escherichia coli E482] gi|323953134|gb|EGB49001.1| tol-Pal system beta propeller TolB [Escherichia coli H252] gi|323958484|gb|EGB54190.1| tol-Pal system beta propeller TolB [Escherichia coli H263] gi|323967343|gb|EGB62764.1| tol-Pal system beta propeller TolB [Escherichia coli M863] gi|323976279|gb|EGB71369.1| tol-Pal system beta propeller TolB [Escherichia coli TW10509] gi|324116282|gb|EGC10203.1| tol-Pal system beta propeller TolB [Escherichia coli E1167] gi|326341511|gb|EGD65301.1| translocation protein TolB [Escherichia coli O157:H7 str. 1044] gi|326345730|gb|EGD69469.1| translocation protein TolB [Escherichia coli O157:H7 str. 1125] gi|327254429|gb|EGE66051.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli STEC_7v] gi|330910491|gb|EGH39001.1| TolB protein precursor [Escherichia coli AA86] gi|331038039|gb|EGI10259.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H736] gi|331044643|gb|EGI16770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M605] gi|331050026|gb|EGI22084.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli M718] gi|331060522|gb|EGI32486.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA143] gi|331065463|gb|EGI37356.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli TA271] gi|331075915|gb|EGI47212.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H591] gi|331080594|gb|EGI51770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli H299] gi|332093801|gb|EGI98855.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii 5216-82] gi|332342077|gb|AEE55411.1| translocation protein TolB [Escherichia coli UMNK88] gi|332760891|gb|EGJ91179.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 4343-70] gi|332761319|gb|EGJ91605.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 2747-71] gi|332763940|gb|EGJ94178.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-671] gi|332768161|gb|EGJ98346.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri 2930-71] gi|333007349|gb|EGK26829.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri VA-6] gi|333008017|gb|EGK27493.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-218] gi|333010141|gb|EGK29576.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-272] gi|333021093|gb|EGK40350.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-227] gi|333021479|gb|EGK40729.1| tol-Pal system beta propeller repeat protein TolB [Shigella flexneri K-304] Length = 430 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|50120312|ref|YP_049479.1| translocation protein TolB [Pectobacterium atrosepticum SCRI1043] gi|67461950|sp|Q6D7F2|TOLB_ERWCT RecName: Full=Protein tolB; Flags: Precursor gi|49610838|emb|CAG74283.1| TolB protein [Pectobacterium atrosepticum SCRI1043] Length = 430 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/432 (22%), Positives = 190/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + V + +HA V++ + P+ + K+ V +V DL+ S Sbjct: 7 VAVSFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGAIVGADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN I + Q+ + W +LG +V G+V V ++L D Sbjct: 67 KFNPIDANRMPQQPATASEV-TPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVDTSGNP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + +F + R AHT SD++++ ++G KG F +RI +V ++ G L V Sbjct: 126 GNVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N +++ Q L P +S + K+AY T++ ++ T + A +++ + Sbjct: 185 ADYDGYN-QFVVHRSPQPLMSPAWSADGSKLAYVTFESGR--SALVIQTLANGAIRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y ++L S +T+ N ++ PDS Sbjct: 242 FPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISPVTDGRSNNTEPTWFPDSQT 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + SD+ G+ Q+Y + +NG +R++ + + D S G + +G I Sbjct: 302 LAYTSDQAGRPQVYKVNANGGAPQRVTWEGSQNQ-DSDVSADGKFLVTVSSNGGAQHISK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 + ++L + + P+ +P+G +I+S K+ GS L + +GR + L T Sbjct: 361 LDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKFPAWSPYL 430 >gi|218553267|ref|YP_002386180.1| translocation protein TolB [Escherichia coli IAI1] gi|226705879|sp|B7M6B0|TOLB_ECO8A RecName: Full=Protein tolB; Flags: Precursor gi|218360035|emb|CAQ97582.1| periplasmic protein [Escherichia coli IAI1] Length = 430 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 100/439 (22%), Positives = 197/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++V + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWVGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|15596169|ref|NP_249663.1| translocation protein TolB [Pseudomonas aeruginosa PAO1] gi|12644681|sp|P50601|TOLB_PSEAE RecName: Full=Protein tolB; Flags: Precursor gi|9946879|gb|AAG04361.1|AE004530_14 TolB protein [Pseudomonas aeruginosa PAO1] gi|5733837|gb|AAC44661.2| TolB [Pseudomonas aeruginosa] Length = 432 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 198/417 (47%), Gaps = 12/417 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + +++ + P+++ F + L +S ++ DL+ S F + + + + Sbjct: 24 PLVISSGNDRAIPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQA 83 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + F+DW ++G ++ G ++ G RL+V++ L+DV +Q++ S R + Sbjct: 84 SEVI-FRDWKAVGVNYVMVGNIVPAG-GRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDM 141 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQI 213 +H I+D ++ +TG KG F++++L+V+ S + +L D DGA L SR+ I Sbjct: 142 SHYIADQSFEKLTGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPI 201 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PRFSP+ +++AY +++ + R+++ R ++I NF + AP FS +G R Sbjct: 202 V-SPRFSPDGRRIAYVSFEQKRP-RIFIQYVDTGR-REQITNFEGLNGAPAFSPDGNRLA 258 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + +D +IY +DL S A RLTN L I+ + D S + F SDR GK Q+Y M Sbjct: 259 FVLSRDGNPEIYVMDLGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNV 318 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSN 391 N R++ + +P S + F I R+L + Sbjct: 319 NSGAVDRVTFIGNYNA-NPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTL 377 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G LI++ ++ L + +NGR + T +P W +++ Sbjct: 378 DDSPTVAPNGTMLIYATRQQDRG--VLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >gi|107100428|ref|ZP_01364346.1| hypothetical protein PaerPA_01001453 [Pseudomonas aeruginosa PACS2] gi|116048897|ref|YP_792302.1| translocation protein TolB [Pseudomonas aeruginosa UCBPP-PA14] gi|218893057|ref|YP_002441926.1| translocation protein TolB [Pseudomonas aeruginosa LESB58] gi|254239320|ref|ZP_04932643.1| TolB protein [Pseudomonas aeruginosa C3719] gi|254245255|ref|ZP_04938577.1| TolB protein [Pseudomonas aeruginosa 2192] gi|296390669|ref|ZP_06880144.1| translocation protein TolB [Pseudomonas aeruginosa PAb1] gi|313105859|ref|ZP_07792122.1| TolB protein [Pseudomonas aeruginosa 39016] gi|115584118|gb|ABJ10133.1| TolB protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126171251|gb|EAZ56762.1| TolB protein [Pseudomonas aeruginosa C3719] gi|126198633|gb|EAZ62696.1| TolB protein [Pseudomonas aeruginosa 2192] gi|218773285|emb|CAW29097.1| TolB protein [Pseudomonas aeruginosa LESB58] gi|310878624|gb|EFQ37218.1| TolB protein [Pseudomonas aeruginosa 39016] Length = 432 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 198/417 (47%), Gaps = 12/417 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + +++ + P+++ F + L +S ++ DL+ S F + + + + Sbjct: 24 PLVISSGNDRAIPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQA 83 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + F+DW ++G ++ G ++ G RL+V++ L+DV +Q++ S R + Sbjct: 84 SEVI-FRDWKAVGVNYVMVGNIVPAG-GRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDM 141 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQI 213 +H I+D ++ +TG KG F++++L+V+ S + +L D DGA L SR+ I Sbjct: 142 SHYIADQSFEKLTGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPI 201 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PRFSP+ +++AY +++ + R+++ R ++I NF + AP FS +G R Sbjct: 202 V-SPRFSPDGRRIAYVSFEQKRP-RIFIQYVDTGR-REQITNFEGLNGAPAFSPDGNRLA 258 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + +D +IY +DL S A RLTN L I+ + D S + F SDR GK Q+Y M Sbjct: 259 FVLSRDGNPEIYVMDLGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNV 318 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSN 391 N R++ + +P S + F I R+L + Sbjct: 319 NSGAVDRVTFIGNYNA-NPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTL 377 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G LI++ ++ L + +NGR + T +P W +++ Sbjct: 378 DDSPTVAPNGTMLIYATRQQDRG--VLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >gi|320172957|gb|EFW48185.1| translocation protein TolB [Shigella dysenteriae CDC 74-1112] Length = 430 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPSAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQVRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|82776018|ref|YP_402365.1| translocation protein TolB [Shigella dysenteriae Sd197] gi|119371061|sp|Q32II1|TOLB_SHIDS RecName: Full=Protein tolB; Flags: Precursor gi|81240166|gb|ABB60876.1| periplasmic protein [Shigella dysenteriae Sd197] Length = 430 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 197/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R +HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYASHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|146310896|ref|YP_001175970.1| translocation protein TolB [Enterobacter sp. 638] gi|166988076|sp|A4W889|TOLB_ENT38 RecName: Full=Protein tolB; Flags: Precursor gi|145317772|gb|ABP59919.1| TolB, N-terminal domain protein [Enterobacter sp. 638] Length = 430 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 96/432 (22%), Positives = 189/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + V + +HA V++ + P+ + ++ + +V+ DL+ S Sbjct: 7 VAVSFFMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGIVAADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN + + Q+ + + W++LG +V G+V V ++L D Sbjct: 67 KFNPLDRSRLPQQPGTAQEV-QPAAWSALGIDAVVVGQVTPSPDGDYNVTYQLVDTGGAP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + + R HT SD++++ +TG KG F +RI +V ++ G L V Sbjct: 126 GTVLAQNTYKVNKKWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++ Q L P ++P+ K+AY T++ ++ T + A +++ + Sbjct: 185 SDYDGYN-QFTVHRSPQPLMSPAWTPDGSKLAYVTFESGR--SALVIQTLSNGAVRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +D+ S ++T+ N ++ PDS Sbjct: 242 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQVTDGRSNNTEPTWFPDSQN 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G + I Sbjct: 302 LAFTSDQAGRPQVYKVNVNGGTPQRITWEGSQNQ-DADVSSDGKTMVMVSSAGGQQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTP 434 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 361 QDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKSPAWSPYL 430 >gi|251790482|ref|YP_003005203.1| translocation protein TolB [Dickeya zeae Ech1591] gi|247539103|gb|ACT07724.1| Tol-Pal system beta propeller repeat protein TolB [Dickeya zeae Ech1591] Length = 428 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 103/438 (23%), Positives = 193/438 (44%), Gaps = 18/438 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSK 71 +KI L L+ + +HA V++ S IA F S + ++ +V+ Sbjct: 5 LKIALSFLM-----LWTAVLHAEVRIEITQGVDSARPIAVVPFKSAGGAVPEEIGNIVAA 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I Q+ + W +LG ++ G+V V ++L Sbjct: 60 DLRNSGKFNPIDPSRMPQQPGTAAEV-TPSAWTALGIDAVIVGQVQPTADG-YLVSYQLV 117 Query: 132 DV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + +F + R AHT SD++++ ++G KG F +RI +V ++ G Sbjct: 118 DTSGNAGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTN-GGQY 176 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N +++ + L P +S + K+AY T++ ++ T + Sbjct: 177 PYELRVADYDGYN-QFVVHRSPEPLMSPSWSSDGSKLAYVTFESGR--SALVVQTLANGD 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I +F AP FS +G + ++ K ++++Y ++L S ++T+ N ++ Sbjct: 234 IRQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPTW 293 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PDS + + SD+ G+ Q+Y + NG +R++ + + D S G + +G Sbjct: 294 LPDSQTLAYTSDQAGRPQIYKVGINGGAPQRLTWEGSQNQ-DAEISSDGKFLVMVSSNGG 352 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 I ++L + + P+ +P+G +I+S K+ GS L + +GR + Sbjct: 353 AQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKA 410 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W +M Sbjct: 411 RLPATDGQVRFPAWSPYM 428 >gi|114562639|ref|YP_750152.1| TolB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|122941016|sp|Q084K1|TOLB_SHEFN RecName: Full=Protein tolB; Flags: Precursor gi|114333932|gb|ABI71314.1| TolB, N-terminal domain protein [Shewanella frigidimarina NCIMB 400] Length = 442 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 199/447 (44%), Gaps = 23/447 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 NL L L+ T A + + P+++ + +S+VV+ DL Sbjct: 3 NLAKWLTLVLIVLTTPARAALDIVITEGVDAARPIAVVPFVWQGQGPAPASISDVVASDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + + Q + + Q+W ++ A+ LV G V G D+ V F L D+ Sbjct: 63 SRSGTFKTLDVRALPQSTISSVNGFTAQNWANVEAEALVVGTVKPYGADQYLVSFELIDL 122 Query: 134 KDRKQIIGK-------------KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + GK + S +R+ +H ISD +Y+ +TG +G F +RI +V Sbjct: 123 VKAQLQAGKGPQNNNELLLESRETVISANQFRQYSHRISDIVYEKLTGIRGAFLTRIAYV 182 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 L + D DG N + L S + L P +SP+ +++AY ++++ ++ Sbjct: 183 VVKQGQ-KAPYHLMIADYDGYNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENRKA-EIF 239 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D + + +F + AP FS +GK+ +++ KD +IY VD+ + AT R+T Sbjct: 240 VQDI-YSQTRTLVSSFDGINGAPAFSPDGKKLAVTLSKDGQPEIYVVDIATKATRRITEH 298 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ S+ PD I+F S+R GK QLY + + + R++ + E + SP G Sbjct: 299 YAIDTEPSWFPDGKSILFTSERGGKPQLYRVSLDTNKVSRMTFEGEWNLGG-SISPDGRS 357 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + F + KF I M ++L ++P+ +P+G +I+ G L + Sbjct: 358 MIFVNRTNGKFHIARMDLATRFMQVLSSTQLDESPSVAPNGTMVIYGTTHQGKQ--VLAA 415 Query: 421 IDLNGRNE-TLINTPAYASDPQWVGFM 446 + ++GR + L P W F+ Sbjct: 416 VSMDGRFKARLPVGQGEVKSPAWSPFL 442 >gi|187733089|ref|YP_001879397.1| translocation protein TolB [Shigella boydii CDC 3083-94] gi|226705895|sp|B2TUC6|TOLB_SHIB3 RecName: Full=Protein tolB; Flags: Precursor gi|187430081|gb|ACD09355.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii CDC 3083-94] Length = 430 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPSAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|295675612|ref|YP_003604136.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1002] gi|295435455|gb|ADG14625.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1002] Length = 430 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 105/444 (23%), Positives = 200/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVATCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F + S + W + GA V G V + + V Sbjct: 59 TIVRQDLQRSGKFTNVDAGS---TPVSETDSVDLGAWKAKGANAFVAGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V +S Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGNRGVFATRLSYVIKSGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRI-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 +YSPD I F SDR G Q+Y M + G + +R++ + P SP G +A+ Sbjct: 289 PTYSPDGQWIYFTSDRGGAPQIYKMPAQGESAGNAQRVTFTGSYN-TSPRVSPDGKELAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G L + S+ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGGFKLYIQDLQGGTATGLTDTSHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|237730721|ref|ZP_04561202.1| translocation protein TolB [Citrobacter sp. 30_2] gi|226906260|gb|EEH92178.1| translocation protein TolB [Citrobacter sp. 30_2] Length = 431 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 96/439 (21%), Positives = 188/439 (42%), Gaps = 13/439 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + ++ + +V Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGIVG 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG +V G+V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPGTAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYSVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 120 VDTGGAPGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 178 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 179 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLSNG 235 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ N + Sbjct: 236 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPT 295 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + + Sbjct: 296 WFPDSQNLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSAN 354 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 355 GQQHIAKQDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 412 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 413 ARLPATDGQVKFPAWSPYL 431 >gi|330721823|gb|EGG99797.1| tolB protein precursor2C [gamma proteobacterium IMCC2047] Length = 432 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 103/434 (23%), Positives = 199/434 (45%), Gaps = 12/434 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSP--VSIAFTKFVSIDELGGKVSEVVSKD 72 + +L+++ G A ++ +P + + L ++++VS D Sbjct: 6 LRFTFVLLMVAGLLR-PAWASFEIEITQGVDNPTRFAAVPFGWQGAGLLPEDIAQIVSAD 64 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F + Q + T D + ++DW L + L+ G+V RV + L+D Sbjct: 65 LSRSGQFVALDQRNMMSLPTRADQV-YYRDWRILNQEFLLIGQVTPHANGGYRVHYELYD 123 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV-SGIIKN 191 V +++++ + P R AH ISD IY+ +TG KG F++RI +V+ +G + Sbjct: 124 VYKQQRMVEGNIKAGPNELRDAAHLISDRIYERLTGIKGAFSTRIAYVTVDRPANGAERV 183 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D DG + + SR+ I P +SP+ K+AY +++ VY+ D + + Sbjct: 184 RLLVADADGYREKIIRESREPI-MSPHWSPDGNKLAYVSFEGRRPA-VYIQDVSTGK-RQ 240 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 ++ FR + AP +S +G++ +++ KD +IY D+ + +R+T I+ S+S Sbjct: 241 KVPAFRGINSAPAWSPDGRKLAMTLSKDGNPEIYIYDIATGKFQRVTRHFGIDTEPSWSA 300 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D ++F S R GK Q+Y + +R++ + + + S G + F Sbjct: 301 DGKSLIFTSSRGGKPQIYRKEIQTGRLERLTFEGDYNARG-RLSADGRYLVMVHRQAGVF 359 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I V + R+L + ++P+ +P+G +I++ + L + L+GR ++ Sbjct: 360 HIAVQDLKRDRLRVLTQTQLDESPSIAPNGSMIIYATNDNNKGI--LAFVSLDGRVKSRG 417 Query: 432 NTP-AYASDPQWVG 444 + +P W Sbjct: 418 PSKFGDVREPAWSP 431 >gi|56479691|ref|NP_706494.2| translocation protein TolB [Shigella flexneri 2a str. 301] gi|32699693|sp|Q83MM7|TOLB_SHIFL RecName: Full=Protein tolB; Flags: Precursor gi|56383242|gb|AAN42201.2| periplasmic protein [Shigella flexneri 2a str. 301] Length = 430 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 194/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPHPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDLAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|188534420|ref|YP_001908217.1| translocation protein TolB [Erwinia tasmaniensis Et1/99] gi|226705882|sp|B2VBQ7|TOLB_ERWT9 RecName: Full=Protein tolB; Flags: Precursor gi|188029462|emb|CAO97339.1| Protein TolB (translocation of group A colicins) [Erwinia tasmaniensis Et1/99] Length = 430 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 195/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + +++ +L V HA V++ P+ + K+ Sbjct: 1 MKQAFRVALSVLMLFV-------AVAHAEVRIEITQGVNTARPIGVVPFKWDGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T+ + + W +LG +V G+V Sbjct: 54 IGGIVAADLRNSGKFNPIDRARLPQQPTSVAEV-QPAAWTALGIDAVVVGQVQPGADGSY 112 Query: 125 RVEFRLWDVKDR-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D ++ + F W R AH+ SD+ ++ +T KG F +RI +V + Sbjct: 113 TVSYQLVDTSGNPGAVLAQNQFKVTKQWLRYAAHSASDESFEKLTAIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ KVAY T++ ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K +++IY +D+ S ++T+ + Sbjct: 229 QTLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNIYVMDIGSGQISQITDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWEGAQNQ-DADVSSDGKSMV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + L + + P+ +P+G +I+S + GS L + Sbjct: 348 MISTNSGAQHVARQDLVTGAVQKLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|110804634|ref|YP_688154.1| translocation protein TolB [Shigella flexneri 5 str. 8401] gi|123147175|sp|Q0T6X7|TOLB_SHIF8 RecName: Full=Protein tolB; Flags: Precursor gi|110614182|gb|ABF02849.1| translocation protein TolB precursor [Shigella flexneri 5 str. 8401] Length = 430 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 195/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDLAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|84623209|ref|YP_450581.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|119371067|sp|Q2P570|TOLB_XANOM RecName: Full=Protein tolB; Flags: Precursor gi|84367149|dbj|BAE68307.1| TolB protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 439 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 120/442 (27%), Positives = 216/442 (48%), Gaps = 16/442 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF-----VKVATNSANYSPVSIAFTKFVSIDELGG-KVS 66 MK L L L P S A + + SA+ +P+++ + VS Sbjct: 1 MKKPLRWLAALTVLLLPLSALAQQQGLTIDIVGGSASATPIAVIPMPYQGSGTAPQTDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F + +K T + +FQ W +L +V GRV+ G+ RV Sbjct: 61 AVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMNAGEGAYRV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 120 EYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGKG 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + +YL D Sbjct: 180 GAMRYALMVADSDGYNPQTIVRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDIAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 238 G-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD I F SDR G+ Q+Y + ++G R++ + V S G IA + Sbjct: 297 PTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVTFQGNYNATASV-SFDGKKIAVAQG 355 Query: 367 SGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + I +M + L S ++P+++P+ ++++ ++ G LY++ + Sbjct: 356 SGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSSD 413 Query: 425 GR-NETLINTPAYASDPQWVGF 445 R + L+ +P W + Sbjct: 414 ARVRQRLVLADGDVREPAWGPY 435 >gi|283784493|ref|YP_003364358.1| colicin import protein [Citrobacter rodentium ICC168] gi|282947947|emb|CBG87511.1| colicin import protein [Citrobacter rodentium ICC168] Length = 430 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 95/428 (22%), Positives = 186/428 (43%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + ++ + +V DL+ S FN Sbjct: 11 FLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDIGGIVGADLRNSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQI 139 + + Q+ + + W++LG +V G+V V ++L D + Sbjct: 71 LDRSRLPQQPGTAQEV-QPAAWSALGIDAVVIGQVTPNPDGSYNVAYQLVDTGGAPGTVL 129 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + + R HT SD++++ +TG KG F +RI +V ++ G L V D D Sbjct: 130 AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N +++ Q L P +SP+ K+AY T++ ++ T + A +++ +F Sbjct: 189 GYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLSNGAVRQVASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +D+ S ++T+ N ++ PDS + F Sbjct: 246 NGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +RI+ + + D S G + + + I Sbjct: 306 SDQAGRPQVYKVNVNGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNNGQQHIAKQDLV 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 AGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 FPAWSPYL 430 >gi|218549687|ref|YP_002383478.1| translocation protein TolB [Escherichia fergusonii ATCC 35469] gi|226705883|sp|B7LKL8|TOLB_ESCF3 RecName: Full=Protein tolB; Flags: Precursor gi|218357228|emb|CAQ89863.1| periplasmic protein [Escherichia fergusonii ATCC 35469] Length = 430 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 102/428 (23%), Positives = 190/428 (44%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + K+ + +VS DL+ S FN Sbjct: 11 FLMLWAAMLHAEVRIVIDGGVDSGRPIGVVPFKWAGPGAAPEDIGGIVSDDLRYSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR-KQII 140 + + Q+ + + + W++L +V G+V V ++L D ++ Sbjct: 71 LDRARLPQQPASAQEV-QPAAWSALAIDAVVVGQVTPNPDGSYNVTYQLVDTGGAPGTVL 129 Query: 141 GKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + F W R AHT+SD++++ +TG KG F +R+ +V ++ G L V D D Sbjct: 130 AQNSFKVNKQWLRYAAHTVSDEVFEKLTGIKGAFRTRLAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N ++ Q L P +SP+ K+AY T++ V + T + A +++ +F Sbjct: 189 GYNP-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSELV--IQTLANGAIRKVASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F Sbjct: 246 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +RI+ + + D S G + G K I Sbjct: 306 SDQAGRPQVYKVNINGGAPQRITWEGTQNQ-DADVSSDGKFMVMVSSDGGKQHIAKQDLV 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 FPAWSPYL 430 >gi|87118952|ref|ZP_01074850.1| tolB protein [Marinomonas sp. MED121] gi|86165343|gb|EAQ66610.1| tolB protein [Marinomonas sp. MED121] Length = 421 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 95/425 (22%), Positives = 194/425 (45%), Gaps = 11/425 (2%) Query: 27 FFPTSIHAFVKVATNSANYS--PVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 + A + + S P+++ + D L V++++ DL+RS +F I + Sbjct: 4 VLSNLVRAQLVIEITSGADQLLPLAVVPFAYEGRDGLPEDVAQIIENDLKRSGLFEAIPR 63 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK- 143 + + + + F+DW L + +V G V + + + F L +V +K + Sbjct: 64 TNMLSLPSKKEDVH-FRDWRLLKSDYVVIGDVKQIDANNFEINFELINVLSQKTVEKHTG 122 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + R AH ISD IY+ +TG +G F++RIL+V+ L V D DG Sbjct: 123 LAVKVSGLRDAAHYISDKIYRLLTGVRGAFSTRILYVTAEGNRAEPTYRLQVADADGHRP 182 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + + S++ I P +S N + + Y + D +++ + + ++I +R + AP Sbjct: 183 QVIVESKEPI-LSPSWSRNGRFITYVMFRDRRP-NIFVQELATGK-RQKIAQYRGLNGAP 239 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +S +GK+ + + KD +IY +D+ + +R+TN I+ S+ PD IVF SDR Sbjct: 240 AWSPDGKQLALVLSKDGNPEIYVLDIATQKLQRITNHYSIDTEPSWEPDGKGIVFTSDRG 299 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G Q+Y + + +R++ + + + +P G + + + + I + + Sbjct: 300 GNPQIYRVDISSKAVERVTFEGDLNTRA-RMTPDGRYLVTVQKNEGNYHIALQDMKNGRV 358 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 ++L E ++P+ +P+G ++++ G L + ++G + L + +P W Sbjct: 359 QILTETYLDESPSIAPNGSMVMYATTYKGKGI--LAVVSVDGLVKYRLPSAAGEVREPAW 416 Query: 443 VGFMD 447 F + Sbjct: 417 SPFFE 421 >gi|188577428|ref|YP_001914357.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae PXO99A] gi|226705899|sp|B2STJ5|TOLB_XANOP RecName: Full=Protein tolB; Flags: Precursor gi|188521880|gb|ACD59825.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 439 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 121/442 (27%), Positives = 217/442 (49%), Gaps = 16/442 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF-----VKVATNSANYSPVSIAFTKFVSIDELGG-KVS 66 MK L L L P S A + + SA+ +P+++ + D VS Sbjct: 1 MKKPLRWLAALTVLLLPLSALAQQQGLTIDIVGGSASATPIAVIPMPYQGSDTAPQTDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F + +K T + +FQ W +L +V GRV+ G+ RV Sbjct: 61 AVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 120 EYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGKG 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + +YL D Sbjct: 180 GAMRYALMVADSDGYNPQTIVRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDIAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 238 G-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD I F SDR G+ Q+Y + ++G R++ + V S G IA + Sbjct: 297 PTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVTFQGNYNATASV-SFDGKKIAVAQG 355 Query: 367 SGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + I +M + L S ++P+++P+ ++++ ++ G LY++ + Sbjct: 356 SGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSSD 413 Query: 425 GR-NETLINTPAYASDPQWVGF 445 R + L+ +P W + Sbjct: 414 ARVRQRLVLADGDVREPAWGPY 435 >gi|324114315|gb|EGC08284.1| tol-Pal system beta propeller TolB [Escherichia fergusonii B253] Length = 430 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 102/428 (23%), Positives = 190/428 (44%), Gaps = 13/428 (3%) Query: 24 IGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 + +HA V++ + P+ + K+ + +VS DL+ S FN Sbjct: 11 FLMLWAAMLHAEVRIVIDGGVDSGRPIGVVPFKWAGPGAAPEDIGGIVSDDLRYSGKFNP 70 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR-KQII 140 + + Q+ + + + W++L +V G+V V ++L D ++ Sbjct: 71 LDRARLPQQPASAQEV-QPAAWSALAIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL 129 Query: 141 GKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + F W R AHT+SD++++ +TG KG F +R+ +V ++ G L V D D Sbjct: 130 AQNSFKVNKQWLRYAAHTVSDEVFEKLTGIKGAFRTRLAYVVQTN-GGQFPYELRVSDYD 188 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N ++ Q L P +SP+ K+AY T++ V + T + A +++ +F Sbjct: 189 GYNP-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSELV--IQTLANGAIRKVASFPRH 245 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP FS +G + ++ K ++++Y +DL S ++T+ N ++ PDS + F Sbjct: 246 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQNLAFT 305 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD+ G+ Q+Y + NG +RI+ + + D S G + G K I Sbjct: 306 SDQAGRPQVYKVNINGGAPQRITWEGTQNQ-DADVSSDGKFMVMVSSDGGKQHIAKQDLV 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 ++L + P+ +P+G +I+S + GS L + +GR + L T Sbjct: 365 TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVK 422 Query: 439 DPQWVGFM 446 P W ++ Sbjct: 423 FPAWSPYL 430 >gi|170769037|ref|ZP_02903490.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia albertii TW07627] gi|170122109|gb|EDS91040.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia albertii TW07627] Length = 430 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 98/441 (22%), Positives = 195/441 (44%), Gaps = 16/441 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATN--SANYSPVSIAFTKFVSIDELGGKVSEV 68 + + L ++ + ++HA V + + + P+ + ++ + + Sbjct: 1 MKQALRLAFSFLI---LWTAAVHATVSIDITDWNDSARPIGVVPFQWAGPGAAPEDIGGI 57 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+ DL+ S FN + + Q+ + + + W++LG +V G+V V + Sbjct: 58 VAADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAY 116 Query: 129 RLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + + + R HT SD++++ +TG KG F +RI +V ++ Sbjct: 117 QLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-G 175 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L V D DG N +++ Q L P +SP+ K+AY T++ ++ T Sbjct: 176 GQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLA 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N Sbjct: 233 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 293 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSS 351 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G + I ++L + P+ +P+G +I+S + GS L + +GR Sbjct: 352 NGGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGR 409 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 410 FKARLPATDGQVKFPAWSPYL 430 >gi|82543167|ref|YP_407114.1| translocation protein TolB [Shigella boydii Sb227] gi|119371060|sp|Q324H2|TOLB_SHIBS RecName: Full=Protein tolB; Flags: Precursor gi|81244578|gb|ABB65286.1| TolB [Shigella boydii Sb227] Length = 430 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 194/439 (44%), Gaps = 18/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPSAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPHPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDLAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I ++L + P+ +P+G +I+S + GS L + +GR + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFK 411 Query: 429 -TLINTPAYASDPQWVGFM 446 L T P W ++ Sbjct: 412 ARLPATDGQVKFPAWSPYL 430 >gi|67461877|sp|Q5H299|TOLB_XANOR RecName: Full=Protein tolB; Flags: Precursor Length = 439 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 120/442 (27%), Positives = 216/442 (48%), Gaps = 16/442 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF-----VKVATNSANYSPVSIAFTKFVSIDELGG-KVS 66 MK L L L P S A + + SA+ +P+++ + VS Sbjct: 1 MKKPLRWLAALTVLLLPLSALAQQQGLTIDIVGGSASATPIAVIPMPYQGSGTAPQTDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F + +K T + +FQ W +L +V GRV+ G+ RV Sbjct: 61 AVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 120 EYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGKG 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + +YL D Sbjct: 180 GAMRYALMVADSDGYNPQTIVRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDIAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 238 G-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD I F SDR G+ Q+Y + ++G R++ + V S G IA + Sbjct: 297 PTWAPDGGSIYFTSDRGGRPQIYQVAASGGSANRVTFQGNYNATASV-SFDGKKIAVAQG 355 Query: 367 SGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + I +M + L S ++P+++P+ ++++ ++ G LY++ + Sbjct: 356 SGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSSD 413 Query: 425 GR-NETLINTPAYASDPQWVGF 445 R + L+ +P W + Sbjct: 414 ARVRQRLVLADGDVREPAWGPY 435 >gi|187922764|ref|YP_001894406.1| translocation protein TolB [Burkholderia phytofirmans PsJN] gi|226705872|sp|B2T077|TOLB_BURPP RecName: Full=Protein tolB; Flags: Precursor gi|187713958|gb|ACD15182.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia phytofirmans PsJN] Length = 430 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 104/444 (23%), Positives = 200/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + HA + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AAHAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S W + GA V+G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGS---TPVAETDSVDLGSWKAKGANAFVSGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRV-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SPD I F SDR G+ Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G+ L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|152989051|ref|YP_001349885.1| translocation protein TolB [Pseudomonas aeruginosa PA7] gi|150964209|gb|ABR86234.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas aeruginosa PA7] Length = 432 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 104/417 (24%), Positives = 198/417 (47%), Gaps = 12/417 (2%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + +++ + P+++ F + L +S ++ DL+ S F + + + + Sbjct: 24 PLVISSGNDRAIPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQA 83 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + F+DW ++G ++ G ++ G RL+V++ L+DV +Q++ S R + Sbjct: 84 SEVI-FRDWKAVGVNYVMVGNIVPAG-GRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDM 141 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQI 213 +H I+D ++ +TG KG F++++L+V+ S + +L D DGA L SR+ I Sbjct: 142 SHYIADQSFEKLTGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPI 201 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PRFSP+ +++AY +++ + R+++ R ++I NF + AP FS +G R Sbjct: 202 V-SPRFSPDGRRIAYVSFEQKRP-RIFIQYVDTGR-REQITNFEGLNGAPAFSPDGNRLA 258 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + +D +IY +DL S + RLTN L I+ + D S + F SDR GK Q+Y M Sbjct: 259 FVLSRDGNPEIYVMDLGSRSLRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNV 318 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSN 391 + R++ + +P S + F I R+L + Sbjct: 319 SSGAVDRVTFIGNYNA-NPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTL 377 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 +PT +P+G LI++ ++ L + +NGR + T +P W +++ Sbjct: 378 DDSPTVAPNGTMLIYATRQQDRG--VLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >gi|119775221|ref|YP_927961.1| translocation protein TolB [Shewanella amazonensis SB2B] gi|166988080|sp|A1S7D5|TOLB_SHEAM RecName: Full=Protein tolB; Flags: Precursor gi|119767721|gb|ABM00292.1| tolB protein [Shewanella amazonensis SB2B] Length = 441 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 102/442 (23%), Positives = 196/442 (44%), Gaps = 22/442 (4%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +LI + A + + P+++ + + ++S+VV+ DL RS Sbjct: 7 WALLIIAALSLPVKAALDIVITEGVDAARPIAVVPFVWQGTGPVPSQISDVVASDLTRSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F + Q + + Q W + A+ V G + G D+ V F L D+ + Sbjct: 67 TFKPLDALGLPQSGISTLAEFAPQKWTGINAEAAVVGAIKPYGPDQYLVTFDLIDLLKAQ 126 Query: 138 ------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 + ++ + A +R+ H ISD +Y+ +TG +G F +RI +V + Sbjct: 127 LAGQAPLNKQDLLLDSRQTVITAAQFRQYGHRISDVVYEKLTGIRGAFLTRIAYVVVNHA 186 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L + D DG N L S + L P +SP+ +++AY ++++ +++ D Sbjct: 187 E-KAPYRLMIADYDGYNEHMLLRSPEP-LMSPAWSPDGRRLAYVSFENRKA-EIFVQDIF 243 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +A ++ +F + AP FS +GK +++ KD +IY++D+ + T R+TN I+ Sbjct: 244 T-QARTKVSSFPGINGAPSFSPDGKTLAVTLSKDGQSEIYTIDIATKTTRRITNHYAIDT 302 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S+ PD ++ S+R G+ QLY ++ + R++ D E + +P G + F Sbjct: 303 EPSWFPDGKSLLITSERGGRPQLYKVELDSGKLTRLTFDGEWNLGG-SITPDGRTLIFVN 361 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + KF I M + ++L ++P+ +P+G +I+ G L ++ +G Sbjct: 362 RTNGKFNIARMDLETRFMQVLTTTRLDESPSVAPNGTMVIYGTTHQGRQ--VLAAVSTDG 419 Query: 426 RNE-TLINTPAYASDPQWVGFM 446 R + L P W F+ Sbjct: 420 RFKARLPAGQGEVKSPSWSPFL 441 >gi|296103329|ref|YP_003613475.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057788|gb|ADF62526.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 430 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 188/432 (43%), Gaps = 13/432 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 + + +HA V++ + P+ + ++ +V+ DL+ S Sbjct: 7 VAFSFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDAGGIVAADLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD-- 135 FN + + Q+ + + + W++LG +V G+V V ++L D Sbjct: 67 KFNPLDRSRLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAWQLVDTGGAP 125 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + + R AH SD +++ +TG KG F +RI +V ++ G L V Sbjct: 126 GTVLAQNSYKVTKQYLRYAAHAASDAVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRV 184 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N ++L Q L P +SP+ K+AY T++ ++ T + A +++ + Sbjct: 185 SDYDGYN-QFLVKRSSQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVAS 241 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F AP FS +G + ++ K ++++Y +D+ S ++T+ N S+ PDS Sbjct: 242 FPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPSWFPDSQN 301 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F SD+ G+ Q+Y + NG +RI+ + + V S G + +G + I Sbjct: 302 LAFTSDQAGRPQIYKVNINGGAPQRITWEGSQNQNADVSS-DGKFMVMVSSNGGQQHIAK 360 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TP 434 ++L + P+ +P+G +I+S + GS L + +GR + I T Sbjct: 361 QDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARIPATD 418 Query: 435 AYASDPQWVGFM 446 P W ++ Sbjct: 419 GQVKSPAWSPYL 430 >gi|78485243|ref|YP_391168.1| TolB-like [Thiomicrospira crunogena XCL-2] gi|119371064|sp|Q31H79|TOLB_THICR RecName: Full=Protein tolB; Flags: Precursor gi|78363529|gb|ABB41494.1| TolB protein [Thiomicrospira crunogena XCL-2] Length = 432 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 112/430 (26%), Positives = 211/430 (49%), Gaps = 11/430 (2%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE---LGGKVSEVVSKDLQRSD 77 +V + TS++A + + + ++ + V IA F ++ +V DL RS Sbjct: 8 IVGFVFMWSTSVYADLTIQIDQSSDNAVPIALVPFEWKGAQLHPPQNITSIVGNDLLRSG 67 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F + + + D I F W LG L+ GR+ +E ++E R D+ ++ Sbjct: 68 KFKAVDEAKLPSRPKTLDDI-DFYQWKQLGVDNLLMGRITEEANGTYQIEMRFVDLLRKE 126 Query: 138 QIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 Q+IGK++ S R++AH +SD IY+ +TG +G FN+R+ +V+ V G + SL V Sbjct: 127 QVIGKRWSGISKSLLRQVAHKMSDLIYEELTGIRGAFNTRMAYVTVRNVKGKKQYSLEVA 186 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + + S I P +SP+ Q +AY ++++ V + + ++ + I F Sbjct: 187 DSDGYNSQPILRSSLPI-MSPSWSPDGQHLAYVSFENGRSQIV--LQSLDGKSRQIIAKF 243 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + + AP +S +GK+ +++ KD + D+Y +D+++ RLT I A ++P+ + Sbjct: 244 KGINGAPAWSPDGKKLALTLSKDGSADVYIMDMKTRKLRRLTRNWAIETEAVWAPNGHSL 303 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G+ Q++ + + + +RIS + +P SP G +A +G F I V+ Sbjct: 304 FFNSDRRGQPQIFQVFLDTGEMRRISYVGRYNA-NPAISPDGRYVAMVHANGG-FHIAVL 361 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 +L + ++PT+SP+G ++++ + G + S++ N + L Sbjct: 362 DLYNEDFNILTKTYLDESPTFSPNGEMILYAMNQGGQGKLAVVSVNSN-VTQILSVQEGE 420 Query: 437 ASDPQWVGFM 446 P W ++ Sbjct: 421 VRSPSWGPYL 430 >gi|292487661|ref|YP_003530534.1| protein TolB [Erwinia amylovora CFBP1430] gi|292898898|ref|YP_003538267.1| TolB colicin import protein [Erwinia amylovora ATCC 49946] gi|291198746|emb|CBJ45855.1| TolB colicin import protein [Erwinia amylovora ATCC 49946] gi|291553081|emb|CBA20126.1| Protein tolB precursor [Erwinia amylovora CFBP1430] Length = 430 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 196/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + +++ +L + HA V++ P+ + K+ Sbjct: 1 MKQAFRVALSVLMLFI-------AVAHAEVRIEITQGVNTARPIGVMPFKWDGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T+ + + W +LG ++ G+V Sbjct: 54 IGAIVAADLRNSGKFNPIDRARLPQQPTSVAEV-QPAAWTALGIDAVIVGQVQPGADGSY 112 Query: 125 RVEFRLWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + F W R AHT SD+ ++ +T KG F +RI +V + Sbjct: 113 AVSYQLVDTSANPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ KVAY T++ ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + Sbjct: 229 QTLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQITDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWEGAQNQ-DADVSADGKSMV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + L + + P+ +P+G +I+S + GS L + Sbjct: 348 MISTNSGAQHVARQDLVTGAVQKLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|91792752|ref|YP_562403.1| TolB-like protein [Shewanella denitrificans OS217] gi|123356924|sp|Q12PE6|TOLB_SHEDO RecName: Full=Protein tolB; Flags: Precursor gi|91714754|gb|ABE54680.1| TolB-like protein [Shewanella denitrificans OS217] Length = 442 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 100/450 (22%), Positives = 197/450 (43%), Gaps = 24/450 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVS 70 MKI L L L ++A + + P+++ + ++S++V Sbjct: 1 MKI-LAKWLTLATLMLTAQVNAALDIVITEGVDAARPIAVVPFVWEGPGAAPQQISDIVM 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F + + Q + + W +GA+ +V G + G D+ V F L Sbjct: 60 GDLSRSGTFKPLDIRALPQHGISSVAQFAAASWGKVGAEAVVMGSIKPYGVDQFLVNFEL 119 Query: 131 WDVKDRK-------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 D+ + + ++ S +R+ H ISD +Y+ +TG +G F +R Sbjct: 120 IDLVRAQSQALKGPQNNTELVLESRQTVISANQFRQYGHRISDIVYEKLTGIRGAFLTRT 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V L + D DG N + L S + L P +SP+ +++AY ++++ Sbjct: 180 AYVVVKQGQ-KAPYHLMIADYDGYNEQMLLRSPEP-LMSPTWSPDGRRLAYVSFENRKA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ D + + ++ + AP FS +GK+ +++ KD ++Y +D+ + A +R+ Sbjct: 237 EIFVQDI-YSQTRTLVSSYPGINGAPSFSPDGKKLAVTLSKDGQPEVYVIDIATKAAKRI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ I+ S+ PD ++F S+R GK Q+Y + + R++ + E + +P Sbjct: 296 TDHYSIDTEPSWYPDGKSLLFTSERGGKPQIYSVHLDTGKVSRVTFEGEWNLGG-SITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + F + KF I M ++L ++P+ +P+G +I+ G Sbjct: 355 GRSMIFVNRTNGKFHIARMDLATRFLQVLSSTQLDESPSVAPNGTMVIYGTTHQGKQ--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ ++GR + L P W F+ Sbjct: 413 LAAVSMDGRFKARLPVGQGEVKSPAWSPFL 442 >gi|87198418|ref|YP_495675.1| translocation protein TolB [Novosphingobium aromaticivorans DSM 12444] gi|119371031|sp|Q2GBD2|TOLB1_NOVAD RecName: Full=Protein tolB 1; Flags: Precursor gi|87134099|gb|ABD24841.1| TolB-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 451 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 145/411 (35%), Positives = 217/411 (52%), Gaps = 17/411 (4%) Query: 48 VSIAFTKFV------------SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + IA F S LG +++V+S +L+ + +F + +S + Sbjct: 45 LGIAIPAFATNADVPTPTSAGSTSALGQALAQVISANLRNNGLFKPVGPESLPRPGFEQV 104 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 P F W++ A++LV G V G +L V L+DV ++Q+ + +PA WR+ A Sbjct: 105 QAPDFAVWSARSAEMLVQGYVRANGDGQLTVGCYLYDVALKQQLEKAGWTVAPADWRRAA 164 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H +D IY ++GE F+SR+ +++ES L +MD DGAN RYLT S Sbjct: 165 HKCADMIYARLSGESPFFDSRVAYIAESGPKDRRMKRLAIMDSDGANHRYLT-SGQATAL 223 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PRFSP+ + + Y +Y + R+Y+ D + + + APR+S +GK L S Sbjct: 224 TPRFSPDYKSILYLSYLNGRP-RIYVYDLAANTQ-RLVTETPGPTFAPRWSPDGKWILYS 281 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + DIY V A++RLT+T I++ S+SPD S+IVFESDR G +Q+YVM ++G Sbjct: 282 MATAGNTDIYKVPASGGASQRLTDTPGIDVGGSFSPDGSRIVFESDRSGSQQIYVMNADG 341 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 SD +RIS P WSP+GD IAFT G I V+ G R L + +AP Sbjct: 342 SDHRRISFFG-GRAATPEWSPRGDQIAFTHIVG-NLRIAVVSPGGGDLRYLTDSWQDEAP 399 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 TWSP+GR + F R + G + ++ +DL GRNE ++TP ASDP W + Sbjct: 400 TWSPNGRIIQFFRTEKGSGKASVWQVDLTGRNERRLSTPGDASDPAWGPLL 450 >gi|238897410|ref|YP_002923087.1| tol protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259533857|sp|C4K8V2|TOLB_HAMD5 RecName: Full=Protein tolB; Flags: Precursor gi|229465165|gb|ACQ66939.1| tol protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 429 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 95/431 (22%), Positives = 200/431 (46%), Gaps = 12/431 (2%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +L+ + + + +HA V++ + P+++ K++ E K+++++S DL+ S Sbjct: 7 MLLSLLILWTSLLHAQVRIQITQGVDSARPIAVVPFKWLGTVEPPEKIADIISSDLRNSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 FN I +K + W LG +V G++ + + ++L ++ Sbjct: 67 KFNPIDPSRMPEKPFTASELIT-SSWYGLGVDAVVVGQIQAGADNHYLISYQLVELSSGT 125 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + ++ + R AH+ SD+I+Q +TG KG F++RI +V + + L + D Sbjct: 126 VLTQNQYKVTQQWLRYAAHSASDEIFQKLTGIKGAFSTRIAYVVQKNTR-QLPYELKISD 184 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG N + S Q L P +SP+ QK+AY ++ ++ + ++I NF+ Sbjct: 185 YDGYNPFVVYRS-SQPLMSPAWSPDGQKLAYVNFESGR--SALVIQNLASGSIQKIANFQ 241 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP FS +G + ++ K +++IY +DL S ++T++ N S+ PDS + Sbjct: 242 GHNGAPAFSPDGAKLAFALSKTGSLNIYMMDLASGNITQITDSRSNNTEPSWFPDSRYLA 301 Query: 318 FESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + SD+ G+ Q+Y + +G +RI+ + + + + SP G + + I Sbjct: 302 YTSDQAGRPQVYKIDISGHGVPQRITWNAKQNQ-NSAVSPDGTFLILVNSKDGQQHIAKQ 360 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPA 435 ++L + + P+ +P+ +I+S ++ ++ +L + +GR + L+ Sbjct: 361 DLKTGDVQILTDTLLDETPSIAPNTTMVIYSSTQNANSVLQL--VSTDGRFKALLPEVDG 418 Query: 436 YASDPQWVGFM 446 P W ++ Sbjct: 419 QVKFPAWSPYL 429 >gi|304312901|ref|YP_003812499.1| TolB protein [gamma proteobacterium HdN1] gi|301798634|emb|CBL46866.1| TolB protein [gamma proteobacterium HdN1] Length = 431 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 110/437 (25%), Positives = 211/437 (48%), Gaps = 14/437 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 + + ++L T HA +++ + N +P+++ + S ++S ++S Sbjct: 4 RAFIKIVLFWAAFALATFAHAELRIEVSKGADNATPIAVVPFAWESGGRASDEISTIISA 63 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS +F +++ T D + F+DW +LG + LV GR + F ++ Sbjct: 64 DLYRSGMFKPLARSDMLSWPTRADQV-FFRDWKALGMEYLVIGRWS-NAGGKYTASFEIF 121 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI-IK 190 DV + + K +S ++ R +AH +D I++++TG KG F +R+L+V+ + Sbjct: 122 DVLAGRTM--KSATASASNPRWLAHYTADLIFEALTGIKGAFATRLLYVTMERHGPRNQR 179 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N + + S++ I P ++PN + + Y + +Y+ DT A Sbjct: 180 YRLLVSDSDGYNEKVIRDSKEPI-LSPSWAPNGRHITYVAFQHSHP-GIYIQDTMTGSA- 236 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +RI +F + APRFS +G++ +++ KD +IY VD ++ A +R+T+ I+ A++S Sbjct: 237 QRITSFPGLNGAPRFSPDGQKLALTLSKDGNPEIYVVDTRTRALQRVTSHFAIDTEANWS 296 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD +++ SDR G Q+Y +R++ D + +P G +A Sbjct: 297 PDGGSLIYTSDRSGGPQIYRQSLATGAVERLTFDGNYNARA-SMTPDGRFLAMVHQDSGG 355 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NET 429 F I V + +L + ++P+ +P+G +I++ + G L + ++GR Sbjct: 356 FQIAVQDLERGSFNVLTDTPLDESPSIAPNGTMVIYATLERGRG--VLGVVSIDGRVKVR 413 Query: 430 LINTPAYASDPQWVGFM 446 L ++ +P W FM Sbjct: 414 LPSSVGEVREPAWSPFM 430 >gi|312171769|emb|CBX80027.1| Protein tolB precursor [Erwinia amylovora ATCC BAA-2158] Length = 430 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 196/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + +++ +L + HA V++ P+ + K+ Sbjct: 1 MKQAFRVALSVLMLFI-------AVAHAEVRIEITQGVNTARPIGVMPFKWDGPGAAPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V+ DL+ S FN I + Q+ T+ + + W +LG ++ G+V Sbjct: 54 IGAIVAADLRNSGKFNPIDRARLPQQPTSVAEV-QPAAWTALGIDAVIVGQVQPGADGSY 112 Query: 125 RVEFRLWDV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + F W R AHT SD+ ++ +T KG F +RI +V + Sbjct: 113 AVSYQLVDTSANPGAVLAQNQFKVTKQWLRYAAHTASDESFEKLTAIKGAFRTRIAYVVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ Q L P +SP+ KVAY T++ ++ Sbjct: 173 TN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKVAYVTFESGK--SALVI 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +++ +F AP FS +G + ++ K ++++Y +D+ S ++T+ + Sbjct: 229 QTLANGAIRQVASFPRHNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQIRQVTDGRY 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++ PDS + + SD+ G+ Q+Y + NG +RI+ + + D S G + Sbjct: 289 NSTEPTWFPDSQSLAYTSDQAGRPQIYKIGVNGGTAQRITWEGAQNQ-DADVSADGKSMV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + L + + P+ +P+G +I+S + GS L + Sbjct: 348 MISTNSGAQHVARQDLVTGAVQKLTDTFLDETPSLAPNGTMVIYSSTQG--MGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W ++ Sbjct: 406 TDGRFKARLPATDGQVKFPAWSPYL 430 >gi|262394684|ref|YP_003286538.1| TolB protein [Vibrio sp. Ex25] gi|262338278|gb|ACY52073.1| TolB protein precursor [Vibrio sp. Ex25] Length = 442 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 101/450 (22%), Positives = 191/450 (42%), Gaps = 31/450 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNS-ANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 + VL + A V T+ + P+++ K+ L +S V++ DLQRS Sbjct: 1 MFVLFSSMTNVANAALELVITDGIDSARPIAVVPFKWEGTQALPTDISAVIASDLQRSGK 60 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F+ + Q + + F W +LG L+TG + + + + ++L D+ + Sbjct: 61 FSPVPTSKMPQTPFSESEV-NFDAWTNLGVDALLTGSIKQNAQGDYVINYQLVDIVRGQL 119 Query: 139 IIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 GK R+ AH ISD +Y+ +TG++G F +RI Sbjct: 120 TGGKSKALGSDGELVLSKDHVLFNKVATVQGPRMREYAHRISDLVYEQLTGDRGAFMTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + L V D DG N R + S+ Q L P +SP+ +K+AY ++ + Sbjct: 180 AYVVVN-DKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++M+ ++I ++ APRFS +G + I + K ++ +Y+ DL + ++ Sbjct: 237 EIFIMNIYTGE-REKITSYPRHNGAPRFSPDGNKLAIVLSKTGSLHVYTFDLNTRKLTQI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T N + PD ++F SDR GK Q+Y + R++ + +P Sbjct: 296 TRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQ-ITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + S F + + ++L + ++P+ +P+G +++S + Sbjct: 355 GRFLVMVNRSNAGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKN--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + ++GR + L T P W F+ Sbjct: 413 LSMVSIDGRFKARLPATNGRVRAPAWSPFL 442 >gi|73540499|ref|YP_295019.1| translocation protein TolB [Ralstonia eutropha JMP134] gi|119371052|sp|Q474K8|TOLB_RALEJ RecName: Full=Protein tolB; Flags: Precursor gi|72117912|gb|AAZ60175.1| TolB, N-terminal:WD40-like Beta Propeller [Ralstonia eutropha JMP134] Length = 450 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 103/416 (24%), Positives = 185/416 (44%), Gaps = 18/416 (4%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + V + S + +A F + ++ ++ DL RS + Sbjct: 48 QLNVEISGVGASQIPVATANFQGEAQAPQNLTAIIRSDLARSGRLRNVDPGGA---TVAE 104 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + W S GA V G V G + V FRL+D + + G F + R Sbjct: 105 SANVDLGSWKSRGADAFVAGSVTPSGNGQYEVRFRLYDTVKGQSLGGLAFNVNQGQLRVT 164 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D IY+ + GE+G F +R+ +VS + L + D DG N + S + I+ Sbjct: 165 AHKIADYIYEKLLGERGVFATRLSYVSRVGG----RYQLLISDSDGQNSQVALTSNEPII 220 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ ++VAY +++ + + VY+ D + + N + AP +S +G+ + Sbjct: 221 -SPSWSPDGRRVAYVSFEAKKPV-VYVHDLATGK-RTLVSNQKGNNSAPSWSPDGQHLAV 277 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y V+ + RLT + I+ YSPD I F SDR G Q+Y M + Sbjct: 278 ALSRDGNTQVYQVNADGSGIRRLTRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAG 337 Query: 335 G---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 G +R++ + P SP G +A+ SG F + + L + SN Sbjct: 338 GEEAGSAQRVTFKGSYNV-SPRISPDGKYLAYITRSGG-FKLQLQDLTNGDVTSLTDTSN 395 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 +AP+++ +G+ ++++ + G S L ++ +GR +++ +P W FM Sbjct: 396 DEAPSFAANGKYILYATRVGGR--SVLAAVSTDGRTRQVLSLQSGDVREPSWGPFM 449 >gi|307130109|ref|YP_003882125.1| periplasmic protein [Dickeya dadantii 3937] gi|32699714|sp|Q934G6|TOLB_DICD3 RecName: Full=Protein tolB; Flags: Precursor gi|16116637|emb|CAC82709.1| TolB protein [Erwinia chrysanthemi] gi|306527638|gb|ADM97568.1| periplasmic protein [Dickeya dadantii 3937] Length = 428 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 103/438 (23%), Positives = 193/438 (44%), Gaps = 18/438 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSK 71 +KI L L+ + +HA V++ S I F S + ++ +V+ Sbjct: 5 LKIALSFLM-----LWTAVLHAEVRIEITQGVDSARPIGVVPFKSTGGAVPEEIGSIVAA 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S FN I Q+ + + W +LG ++ G+V V ++L Sbjct: 60 DLRNSGKFNPIDPSRMPQQPGSAAEV-TPAAWTALGIDAVIVGQVQPTADG-YMVSYQLV 117 Query: 132 DV-KDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D ++ + F W R AHT SD++++ +TG KG F +RI +V ++ G Sbjct: 118 DTSGSAGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQY 176 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V D DG N +++ + L P +S + K+AY T++ ++ T + Sbjct: 177 PYELRVADYDGYN-QFVVHRSPEPLMSPSWSADGSKLAYVTFESGR--SALVVQTLANGD 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K++ +F AP FS +G + ++ K ++++Y ++L S ++T+ N ++ Sbjct: 234 IKQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPTW 293 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PDS + + SD+ G+ Q+Y + NG +R++ + + D S G + + Sbjct: 294 FPDSQTLAYTSDQAGRPQIYKIGINGGAPQRLTWEGSQNQ-DSEISSDGKFLVMVSSNSG 352 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 I ++L + + P+ +P+G +I+S K+ GS L + +GR + Sbjct: 353 AQHIAKQDLVTGGVQVLTDTFLDETPSIAPNGTMVIYSSKQG--LGSVLQLVSTDGRFKA 410 Query: 429 TLINTPAYASDPQWVGFM 446 L T P W +M Sbjct: 411 RLPATDGQVRFPAWSPYM 428 >gi|83647596|ref|YP_436031.1| translocation protein TolB [Hahella chejuensis KCTC 2396] gi|119371045|sp|Q2SCL8|TOLB_HAHCH RecName: Full=Protein tolB; Flags: Precursor gi|83635639|gb|ABC31606.1| Periplasmic component of the Tol biopolymer transport system [Hahella chejuensis KCTC 2396] Length = 430 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 102/439 (23%), Positives = 218/439 (49%), Gaps = 14/439 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID--ELGGKVSEV 68 + +I L+L++ G A + + + + + + +A F + L + ++ Sbjct: 1 MKKQIFFTLILLISGL-----ARADLVIEIDKGSRAAIPVAVVPFANESGQPLAEDIGQI 55 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR-LRVE 127 ++DL+RS + + + + I F+DW LG + L+ G V + + +V Sbjct: 56 FTEDLKRSGDIEPLDRTKMVSIPSKAEEI-YFRDWGLLGQRYLLVGGVQYDAPSQVYKVR 114 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 + L++V+ ++++IGK R + H I+D +Y+++TG +G F++RI +V+ Sbjct: 115 YELYNVQSQQRVIGKIISGKSEKLRDMGHAIADAVYEAVTGIRGVFSTRIAYVTLEKSGA 174 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L V D DG L R + P +SP+ +K+AY +++ + +Y+ D Sbjct: 175 KNIYRLEVADADGRRSTELLK-RSMPIISPAWSPDGKKLAYVSFESQRPA-IYVQDVDTG 232 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +F+ + AP +S +G + +++ KD ++Y +DL++N+ +RLTN I+ A Sbjct: 233 TRTQ-VTSFKGLNSAPTWSPDGTKLAVTLSKDGNAELYVLDLRNNSLKRLTNHWAIDTEA 291 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD I F SDR G Q+Y++ ++G +R++ + + P +S G + + Sbjct: 292 SWSPDGRTIAFTSDRGGGPQIYLVDASGGSPRRLTFEGRYN-SRPRFSVDGKKVYYVHQR 350 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + + + Q+++L + ++P+ +P+G +I++ +K+G + ++ +G Sbjct: 351 DGSFNVASLDLESGQDQILTQTEMDESPSVAPNGSMIIYATQKNGKGVLAVVGVN-SGSK 409 Query: 428 ETLINTPAYASDPQWVGFM 446 TL +P W ++ Sbjct: 410 YTLPAQFGDVREPAWSPYI 428 >gi|254787335|ref|YP_003074764.1| translocation protein TolB [Teredinibacter turnerae T7901] gi|237684356|gb|ACR11620.1| Tol-Pal system beta propeller repeat protein TolB [Teredinibacter turnerae T7901] Length = 431 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 103/431 (23%), Positives = 199/431 (46%), Gaps = 9/431 (2%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 ++L+ + S A + + +P IA F +L + ++VS DL RS Sbjct: 5 MVLIPLLLLLSLSTRAELMIEITQGMDNPTPIAIVPFSGSGDLPENIQQIVSSDLLRSGF 64 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG---KDRLRVEFRLWDVKD 135 F ++ + I ++DW LG + LV G+V + D V+F+L+DV Sbjct: 65 FRPLAPSDMLSLPSRQQDI-FYRDWRILGVEYLVIGQVREAAVGAADDYIVDFQLYDVLG 123 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++ ++ K S A R IAH ISD +YQ++TG +G F+++IL++ + G + L Sbjct: 124 QRNVMQKTITGSVAELRDIAHEISDVLYQTLTGIRGAFSTKILYIEDLRREGAGRYRLVK 183 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DGA + L + + L P +S + +VAY +++ ++ + +++ N Sbjct: 184 ADADGAREKVLFTTSEP-LLSPTWSNDMTQVAYVSFETGRPA-IFRQNLLTG-VREQLTN 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 F+ + AP +S + + + + KD ++Y++D+ S R+TN I+ +++ D Sbjct: 241 FKGLNGAPAWSPDDSKLAMVLSKDGNPELYTLDIASKKLTRVTNHFAIDTEPNWTADGKG 300 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 ++F S+R G Q+Y + +R++ + + + P +P G + F I Sbjct: 301 LIFTSNRGGNPQIYQVGLETGRVERLTFEGDYNAR-PRVTPDGKSLVMVHRYKGVFHIAW 359 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 R+L E ++P+ +P+G L+++ K + S+D G L + Sbjct: 360 QDIASGDMRILTETWLDESPSIAPNGAMLLYATKYNDKGVLAAVSMDA-GVKFRLPSKQG 418 Query: 436 YASDPQWVGFM 446 +P W F+ Sbjct: 419 DVREPAWSPFV 429 >gi|237748799|ref|ZP_04579279.1| TolB [Oxalobacter formigenes OXCC13] gi|229380161|gb|EEO30252.1| TolB [Oxalobacter formigenes OXCC13] Length = 423 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 105/420 (25%), Positives = 199/420 (47%), Gaps = 17/420 (4%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 + + + I F + KV+ ++ DL R+ +F LI D+ Sbjct: 19 AQAVGQEVLNIDIAGVGNKQIPIVIAGFSNEATAPEKVTNIIKADLARTGMFRLIGTDAI 78 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 + ++ W + GA LV G ++K ++ V +RL+D+ Q+ + Sbjct: 79 I----GESADIDYRKWRAQGADALVVGTLVKSPDGKIDVRYRLFDLGKSSQLSALSMLAP 134 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + R AH I+DDIY+ +TG KG F + I +V+++ + L + D DG N Sbjct: 135 ASMTRVTAHKIADDIYEKLTGHKGIFATCIAYVTKTGN----EYRLEIADADGGNKLVAL 190 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S++ I+ P +SP+ +VAY +++ + + VY+ + + R + N++ AP +S Sbjct: 191 RSKEPII-SPSWSPDGTRVAYVSFEAKKPV-VYVQNL-VTRQRTMVANYKGNNSAPSWSP 247 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G R +++ KD +Y+V A +++T T IN +SPD I F SDR G Q Sbjct: 248 DGSRLAVALSKDGYTQVYTVSANGGALKQITQTRSINTEPQFSPDGQWIYFTSDRSGGPQ 307 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + NG + +R++ + P SP G +A+ G + + ++ QE+ L Sbjct: 308 IYKVGVNGGNPQRVTFHGNYN-ISPRVSPDGKSLAYISRRGG-YQLYLLDLTNGQEQRLS 365 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFM 446 + S ++P++SP+G+ ++++ L + ++GR + ++ A +P W FM Sbjct: 366 DTSRDESPSFSPNGQFIMYATN---GGRGALSVVSVDGRVKQRLSMKASDVREPSWGPFM 422 >gi|289661909|ref|ZP_06483490.1| translocation protein TolB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667000|ref|ZP_06488075.1| translocation protein TolB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 439 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 215/442 (48%), Gaps = 16/442 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAF-----VKVATNSANYSPVSIAFTKFVSIDELGG-KVS 66 M L L+ L P S + + + SA+ +P+++ + VS Sbjct: 1 MNKPLRWLVALTALLLPLSAFSQQQGLTIDIVGGSASATPIAVIPMPYQGSGTAPQTDVS 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F + +K T + +FQ W +L +V GRV+ G RV Sbjct: 61 AVVGADLDRSGQFRTLPAAQIVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGDGAYRV 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E+ L+DV ++++G + + R ++H ++D IY+ ITG +G F +RI +V+ S Sbjct: 120 EYELFDVAKGERMLGLAMTARANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGKG 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + +YL D Sbjct: 180 GAMRYALMVADSDGYNPQTIVRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDIAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + +FR + AP FS +G+R +++ + +IY +DL S +LTN I+ Sbjct: 238 G-ARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD I F SDR G+ Q+Y + ++G R++ + V S G IA + Sbjct: 297 PTWAPDGGSIYFTSDRGGRPQIYQVSASGGSANRVTFQGNYNATASV-SFDGKKIAVAQG 355 Query: 367 SGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + I +M + L S ++P+++P+ ++++ ++ G LY++ + Sbjct: 356 SGNSYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSSD 413 Query: 425 GR-NETLINTPAYASDPQWVGF 445 R + L+ +P W + Sbjct: 414 ARVRQRLVLADGDVREPAWGPY 435 >gi|119944498|ref|YP_942178.1| TolB domain-containing protein [Psychromonas ingrahamii 37] gi|119863102|gb|ABM02579.1| TolB, N-terminal domain protein [Psychromonas ingrahamii 37] Length = 437 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 106/444 (23%), Positives = 198/444 (44%), Gaps = 18/444 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M + L L + +I S + + P+++ K++ E G SE+++ D Sbjct: 1 MLLRLFLSISMIILSSQASARLEILITEGVNTARPIAVIPFKWLGDGEKPGNFSEIIAAD 60 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK-DRLRVEFRLW 131 LQRS F+ + + + + + W+ +G + L+ G V + + V + L Sbjct: 61 LQRSGQFSPLPIEQMPNTPSKSLGL-DYALWHKMGIEALLMGEVSPSPEAGKYIVTYELV 119 Query: 132 DVKDRKQ--------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 DV + ++ + R+ AH ISD Y+ +TGEKG F +RI +++ Sbjct: 120 DVVAGNANIADYSPILESRRGTVNKTQLRRFAHRISDVAYEKLTGEKGVFLTRIAYIAVD 179 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 S L + D DG N + + S+ I P +SP+ +K+AY +++ VY+ D Sbjct: 180 RKSD-YPYQLRISDYDGYNEKLILRSKQPI-MSPTWSPDGRKLAYVSFEHRRS-EVYIQD 236 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + + +F + +P +S +GK I + KD +IY++++QS A R+TN I Sbjct: 237 L-YSQKRELMTSFPKINGSPSWSPDGKSLAIVLSKDGQPEIYTLEIQSKALRRITNNRAI 295 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + ++SPD + + F S R G Q+Y + KR++ + + + +P G + Sbjct: 296 DTEPNWSPDGNSLTFTSTRGGGPQIYQVDLQSKVTKRLTWEGDLNLGG-AITPDGANLVL 354 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + I + R L + ++P+ +P+G +I+S G G L S+D Sbjct: 355 VSRLDGNYKIAAQDLASGELRTLTKTHLDESPSVAPNGSMIIYSTVYKGSQGLALVSMD- 413 Query: 424 NGRNE-TLINTPAYASDPQWVGFM 446 GR + + P W F+ Sbjct: 414 -GRFKANIPAQSGEVKSPAWSPFL 436 >gi|91781923|ref|YP_557129.1| translocation protein TolB [Burkholderia xenovorans LB400] gi|118574575|sp|Q145B2|TOLB_BURXL RecName: Full=Protein tolB; Flags: Precursor gi|91685877|gb|ABE29077.1| Putative periplasmic TolB protein [Burkholderia xenovorans LB400] Length = 430 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 102/444 (22%), Positives = 201/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I + + W + GA V+G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGA---TPVSETDSVDLGSWKAKGANAFVSGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRI-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SPD I F SDR G+ Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G+ L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|319793386|ref|YP_004155026.1| toL-pal system beta propeller repeat protein tolb [Variovorax paradoxus EPS] gi|315595849|gb|ADU36915.1| Tol-Pal system beta propeller repeat protein TolB [Variovorax paradoxus EPS] Length = 408 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 107/416 (25%), Positives = 191/416 (45%), Gaps = 14/416 (3%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 A +V + + + IA F D K+S++V DL+RS F + + Sbjct: 3 PALAQFRVEVSGVGLTQLPIALVPFKGQDSSPQKISDIVQADLERSGQFRGVDASG---Q 59 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 + S P W A LV G V + R V+FRLWDV + + G+ + Sbjct: 60 ALDEASRPDLSLWRQRTADSLVVGSVTRLADGRFDVKFRLWDVVKGQDLGGQSYTVPQGD 119 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R +H I+D +Y+ +TGEKG F++RI +V+ G + SL V D DG N + S Sbjct: 120 LRLASHRIADFVYEKLTGEKGIFSTRIAYVT----KGGSRYSLWVADADGENAQAALASP 175 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + I+ P +S N Q++AY +++ + VY+ + + + + NF+ AP ++ +G Sbjct: 176 EPII-SPCWSSNGQQLAYVSFESRKPV-VYVHNVASGQ-RRLLANFKGSNSAPAWAPDGN 232 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 +++ +D +Y++ RLT + I+ YS D S I F SDR G Q+Y Sbjct: 233 SLAVTLSRDGGSQLYTIPASGGEPRRLTQSASIDTEPVYSADGSTIYFVSDRGGAPQIYK 292 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++G + R++ + P S G +A+ G F + VM+ + + + Sbjct: 293 MGASGGNPTRVTFSGTYN-ISPSVSGDGRWLAYISRIGGAFKLQVMELATGNVASITDTN 351 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+++P+ + ++++ G L + L+G+ L +P W F Sbjct: 352 ADESPSFAPNSKLIVYATHLQGR--EALMTTTLDGKIKARLAGQAGDIREPDWGPF 405 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 15/178 (8%) Query: 141 GKKFFSSPAS---WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 G + ++ PAS R++ + S D + + S I FVS+ + + M Sbjct: 243 GSQLYTIPASGGEPRRLTQSASIDTEPVYSADG----STIYFVSDRGGAP----QIYKMG 294 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 G N +T S P S + + +AY + ++ +M+ Sbjct: 295 ASGGNPTRVTFSG-TYNISPSVSGDGRWLAYIS-RIGGAFKLQVMELATGNVASI--TDT 350 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + +P F+ N K + + + + L RL + P Q Sbjct: 351 NADESPSFAPNSKLIVYATHLQGREALMTTTLDGKIKARLAGQAGDIREPDWGPFQKQ 408 >gi|320539139|ref|ZP_08038810.1| periplasmic protein [Serratia symbiotica str. Tucson] gi|320030777|gb|EFW12785.1| periplasmic protein [Serratia symbiotica str. Tucson] Length = 430 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 93/445 (20%), Positives = 189/445 (42%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+++ K+ Sbjct: 1 MKQAFRVALGFLIL-------WASVLHAEVRIEITQGVDSARPIAVVPFKWAGSGTPPED 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++V DL+ S F I Q+ T + W +LG +V G+V Sbjct: 54 IGKIVGADLRNSGKFTPIDVARMPQQPTTASEV-TPAAWTALGIDAVVVGQVQPGADGSY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + ++L D + +F + R AHT SD++++ + G KG F +RI ++ + Sbjct: 113 LISYQLVDTSGSPGSVLAQNQFKVTQQWLRYSAHTASDEVFEKLIGTKGAFRTRIAYIVQ 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + G L V D DG N +++ + L P +SP+ K+AY T++ ++ Sbjct: 173 TN-GGKFPYELRVADYDGYN-QFVVHRSPEPLMSPAWSPDGSKLAYVTFESGR--SALVV 228 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T + A +I F AP FS +G R ++ K ++++Y ++L S ++T+ Sbjct: 229 QTLANGAISQIAAFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQMTQITDGRS 288 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 N ++ PD + + SD+ G+ Q+Y + ++G +R++ + + + S G + Sbjct: 289 NNTEPAWFPDGQTLAYTSDQGGRPQIYKISASGGASQRLTWEGSQNQNA-MVSSDGKFLV 347 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I ++L + P+ +P+G +I+S + GS L + Sbjct: 348 MVSSNNGVQHIAKQDLGSGAVQVLTGTLLDETPSIAPNGTMVIYSSMQG--IGSVLQLVS 405 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 +GR + L T P W + Sbjct: 406 TDGRFKARLPATDGQVKSPAWSPHL 430 >gi|87199039|ref|YP_496296.1| translocation protein TolB [Novosphingobium aromaticivorans DSM 12444] gi|119371032|sp|Q2G9L1|TOLB2_NOVAD RecName: Full=Protein tolB 2; Flags: Precursor gi|87134720|gb|ABD25462.1| TolB-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 461 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 213/411 (51%), Gaps = 17/411 (4%) Query: 48 VSIAFTKF------------VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + IA F + + LG V+ VV DL+ + +F + D+ Sbjct: 55 LGIAIPSFPTNASVPTAAEGGTTEALGRNVARVVFNDLKNNGLFKPVGPDALPAIAFPQV 114 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + P F W A++LV G V RL V L+DV ++ + + P WR+ A Sbjct: 115 AAPAFDAWRGRSAEMLVQGFVKANEDGRLTVGCYLYDVALGSELARQGYVVKPEEWRRAA 174 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H +D +Y ++GE F+S+I +++E+ + L +MD DGAN R++T + Sbjct: 175 HKCADMVYSRLSGESPFFDSKIAYIAETGPKDRRRKQLAIMDSDGANHRFITNGQ-ATAL 233 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PR+SP+ ++ Y +Y + R+Y+ + + K + + + APR+S +GK L S Sbjct: 234 TPRYSPDYSQIVYLSYLNG-APRIYIYNIGTGQQ-KLVTSSTNPTFAPRWSPDGKWILYS 291 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + DIY V + A+ RLT++ I++ SYSPD S+IVFESDR G +QLYVM ++G Sbjct: 292 MSVAGNTDIYRVSVNGGASTRLTDSPGIDVGGSYSPDGSRIVFESDRSGSQQLYVMNADG 351 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 S+QKRIS P WSP+GD IAFT G F I V G R L + +AP Sbjct: 352 SNQKRISFFG-GRAATPEWSPRGDQIAFTHL-GGNFRIAVTDPSGGNMRFLTDSWQDEAP 409 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 TWSP+GR + F R + G + ++ +DL GRNE +NTP SDP W + Sbjct: 410 TWSPNGRIVQFFRTERGSGKTGIWQVDLTGRNERKLNTPVDGSDPAWGPVL 460 >gi|194290407|ref|YP_002006314.1| translocation protein tolb [Cupriavidus taiwanensis LMG 19424] gi|193224242|emb|CAQ70251.1| colicin transporter component [Cupriavidus taiwanensis LMG 19424] Length = 457 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 100/418 (23%), Positives = 188/418 (44%), Gaps = 18/418 (4%) Query: 33 HAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 HA + V + S +A F + ++ ++ DL RS F + Sbjct: 53 HAQLNVEISGVGSSQFPVATANFQGEAQAPQNLTAIIRSDLARSGRFRNVDPGGA---TV 109 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + W + GA V G V + V FRL+D + + G F + + R Sbjct: 110 AESANVDLGSWKARGADAFVAGSVTPAAGGKYEVRFRLYDTVKGQSLGGLAFTVNQSQLR 169 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH I+D IY+ + GE+G F +R+ +VS+ + L + D DG N + S + Sbjct: 170 VTAHKIADYIYEKLLGERGVFATRLSYVSKVGG----RYQLLISDSDGQNAQVALTSNEP 225 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I+ P +SP+ +VAY +++ + + VY+ D + + N + AP +S +G+ Sbjct: 226 II-SPSWSPDGARVAYVSFEAKKPV-VYVHDLASGK-RTLVSNQKGNNSAPSWSPDGRHL 282 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +++ +D +Y V+ + RL+ + I+ YSPD I F SDR G Q+Y M Sbjct: 283 ALALSRDGNTQVYQVNADGSGIRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQIYRMP 342 Query: 333 SN---GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++ G +R++ + P SP G +A+ +G F + + L + Sbjct: 343 ASGEEGGGAQRVTFKGSYNV-SPRISPDGKYLAYISRAGG-FKLQLQDLTNGDVTSLTDT 400 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 +N +AP+++ +G+ ++++ + G + L ++ +GR +++ +P W FM Sbjct: 401 ANDEAPSFAANGKYILYATRVGGR--AVLAAVSTDGRTRQVLSLQSGDVREPSWGPFM 456 >gi|296162180|ref|ZP_06844976.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. Ch1-1] gi|295887566|gb|EFG67388.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. Ch1-1] Length = 430 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 103/444 (23%), Positives = 201/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S + W + GA V+G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGS---TPVSETDSVDLGSWKAKGANAFVSGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRI-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SPD I F SDR G+ Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G+ L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|307728551|ref|YP_003905775.1| Tol-Pal system beta propeller repeat-containing protein TolB [Burkholderia sp. CCGE1003] gi|307583086|gb|ADN56484.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1003] Length = 430 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 104/444 (23%), Positives = 200/444 (45%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S T W + GA V G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGSAPVPETAS---VDLGSWKAKGANAFVAGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRI-VVADQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++SPD I F SDR G+ Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PTFSPDGQTIYFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGGFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|77460623|ref|YP_350130.1| translocation protein TolB [Pseudomonas fluorescens Pf0-1] gi|77384626|gb|ABA76139.1| TolB colicin import protein [Pseudomonas fluorescens Pf0-1] Length = 414 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 106/416 (25%), Positives = 203/416 (48%), Gaps = 12/416 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + V + S +P+++ F L ++E++ DL+ S ++ I + + + + P Sbjct: 7 ILVTSGSDRATPIAVVPFGFQGGAVLPDDMAEIIGNDLRNSGYYSPIPKQNMISQPSQPS 66 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 I F+DW ++GAQ ++ G ++ G RL+V++ L++V +++ + R +A Sbjct: 67 EII-FRDWKAVGAQYMMVGSIVPAG-GRLQVQWALFNVATEQKVADGSVSGTTEQLRDMA 124 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H ISD ++ +TG KG F++R+L+V+ S + +L D DGA L SR+ I Sbjct: 125 HYISDQSFEKLTGIKGAFSTRLLYVTAERFSEKNTRYTLQRSDYDGARAVTLLQSREPI- 183 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 PRF+P+ +++AY +++ + R+++ + R ++I NF + AP +S +G R Sbjct: 184 LSPRFAPDGKRIAYVSFEQKRP-RIFMQNIDTGR-REQITNFEGLNGAPAWSPDGNRLAF 241 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD DIY ++L S R+T IN + D S I F SDR GK Q+Y + Sbjct: 242 VLSKDGNPDIYVMNLGSRQITRVTAGPGINTEPYWGKDGSTIYFTSDRGGKPQIYKTSAG 301 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSNL 392 G +R++ + +P S + F + ++L + + Sbjct: 302 GGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDGFTNFKVAAQDLQRGSVKILTDSTLD 360 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 ++PT +P+G +I++ ++ G L + +NGR + T +P W +++ Sbjct: 361 ESPTVAPNGTMVIYATRQQGRG--VLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 414 >gi|56460188|ref|YP_155469.1| translocation protein TolB [Idiomarina loihiensis L2TR] gi|67461918|sp|Q5QYU0|TOLB_IDILO RecName: Full=Protein tolB; Flags: Precursor gi|56179198|gb|AAV81920.1| Periplasmic component of the Tol biopolymer transport system [Idiomarina loihiensis L2TR] Length = 449 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/457 (22%), Positives = 205/457 (44%), Gaps = 31/457 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK L ++L +++ P+++ ++ + ++++V++ Sbjct: 1 MKNILIRSILLFVALTAFVRAGVLEIVITEGIDTARPIAVVPFQWKGEGKAPNELTDVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS FN I + Q+ D I + W +G + ++ G + DR V+F + Sbjct: 61 ADLMRSGKFNPIPVSAMPQRPAADDEI-DYSAWAKMGVEAILVGSIEPYSVDRYMVKFEV 119 Query: 131 WDVKDRK--------------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 DV + + + +R AH ISD Y+++TGE+ Sbjct: 120 IDVLRGQITGGNSQMLRNGELVQSNDHVLDSRSSVIDGDQFRSYAHRISDVAYEALTGER 179 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F ++I +V+ + L V D DGAN + L S + L P +SP+ K+AY + Sbjct: 180 GAFMTKIAYVTVN-HDDRYPYKLAVADYDGANEKILLRSPEP-LMSPAWSPDGNKLAYVS 237 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++++ +++ D R +++ +F + P FS +GK+ + + KD ++Y D++ Sbjct: 238 FENK-TAEIFMQDIYTTR-REKLTSFPGINGNPVFSPDGKKLAMVLSKDGNPELYVFDIK 295 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + +R+T I+ +++PD +VF S+R G+ QLY + + +R++ D E + Sbjct: 296 TKDLQRVTRNRTIDTEPNWTPDGESLVFTSERGGRPQLYSVNLSSGQVRRLTFDGEQNLG 355 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + P G+ + + + I + ++L + S ++P+ +P+G +I+S Sbjct: 356 GTLV-PSGEDMILVNRTRGNYHIAKQEFPRGNMQVLTKTSLDESPSVAPNGSMVIYSTTH 414 Query: 411 DGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L SID GR + L T P W FM Sbjct: 415 NNKQVLALVSID--GRFKARLPATDGEIKSPAWSPFM 449 >gi|170691331|ref|ZP_02882496.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia graminis C4D1M] gi|170143536|gb|EDT11699.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia graminis C4D1M] Length = 430 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/444 (23%), Positives = 199/444 (44%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAAGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S T W + GA V G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGSAPVPETAS---VDLGSWKAKGANAFVAGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V +S Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGAFATRLSYVIKSGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ + RLT I+ Sbjct: 230 GRRI-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++SPD I F SDR G+ Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PTFSPDGQSIYFTSDRGGQPQIYKMSAQGESAGGAQRVTFTGSYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGGFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|323524838|ref|YP_004226991.1| Tol-Pal system beta propeller repeat-containing protein TolB [Burkholderia sp. CCGE1001] gi|323381840|gb|ADX53931.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp. CCGE1001] Length = 430 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 104/444 (23%), Positives = 199/444 (44%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L ++ + L+ +GG + +A + V + IA F + +VS Sbjct: 3 LMTKLGLRTLVASCLIAVGG----AANAQLNVLVTGVGSTQFPIATANFANEANSPQQVS 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +DLQRS F I S T W + GA V G V + + V Sbjct: 59 TIVRQDLQRSGKFTNIDAGSAPVPETAS---VDLGSWKAKGANAFVAGSVNRLPNGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F+L+D + + G S + R AH ++D IY + G +G F +R+ +V ++ Sbjct: 116 RFKLYDTVKGESLGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG + S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQDAHIALSSPEPII-SPAWSPDGTKVAYVSFEKKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G+ +++ + I++V+ RLT I+ Sbjct: 230 GRRI-VVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGTGLRRLTQGSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++SPD I F SDR G+ Q+Y M + G +R++ + P SP G +A+ Sbjct: 289 PTFSPDGQTIYFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYN-TSPRVSPDGKQLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + G L + ++ ++P+++ +G+ ++++ + +G L ++ Sbjct: 348 ISRVGGAFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYATQVNGRG--VLAAVST 405 Query: 424 NGRNETLIN-TPAYASDPQWVGFM 446 +GR +++ +P W FM Sbjct: 406 DGRTRQVLSVQGGSVREPSWGPFM 429 >gi|222111173|ref|YP_002553437.1| translocation protein tolb [Acidovorax ebreus TPSY] gi|221730617|gb|ACM33437.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax ebreus TPSY] Length = 440 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/414 (25%), Positives = 192/414 (46%), Gaps = 14/414 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +V + + IA F + K+S +V DL+RS F + + Sbjct: 39 QFRVEITGVGLTQLPIAIAPFRGEPQSPQKISAIVQADLERSGRFLGVDASGV---ALDE 95 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 S P W A L +G + + R V FRLWDV + + G+ F + A R + Sbjct: 96 SSRPDLSLWRQRKADALTSGSITRLADGRFDVRFRLWDVVKAQDLGGQSFVVTQADLRLV 155 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D +Y+ +TGE+G F++RI +V+++ + SL V D DG N + S + I+ Sbjct: 156 AHRIADFVYEKLTGERGIFSTRIAYVTKAGS----RYSLWVADADGENAQSALSSPEPII 211 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P ++P ++AY +++ + VY+ D R + I NFR AP +S +G+ + Sbjct: 212 -SPAWAPTGTQLAYVSFESRKPV-VYVHDVATGR-RRLIANFRGSNSAPAWSPDGRTLAV 268 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y++D RL + I+ +S D I F SDR G Q+Y + ++ Sbjct: 269 TLSRDGGSQLYTIDANGGEPRRLMQSSGIDTEPVFSSDGRSIYFVSDRGGSPQVYRVAAS 328 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R++ + + P SP G +A+ G + + VM + + S + Sbjct: 329 GGGAERVTFNGSYN-ISPSISPDGQWLAYISRVGGAYKLHVMDFKSGSVTAVTDTSADEN 387 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFMD 447 P+++P+ R ++++ ++ G L + L+G+ L +P W F + Sbjct: 388 PSFAPNSRLIVYATQQQGR--EALMTTTLDGKIKARLAGQGGDIREPDWGPFQN 439 >gi|91227604|ref|ZP_01261908.1| translocation protein TolB precursor [Vibrio alginolyticus 12G01] gi|91188497|gb|EAS74790.1| translocation protein TolB precursor [Vibrio alginolyticus 12G01] Length = 442 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 102/450 (22%), Positives = 191/450 (42%), Gaps = 31/450 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNS-ANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 + VL + A V T+ + P+++ K+ L VS V++ DLQRS Sbjct: 1 MFVLFSSMTNVANAALELVITDGIDSARPIAVVPFKWEGTQALPTDVSAVIASDLQRSGK 60 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F+ + Q + + F W +LG L+TG + + + + ++L D+ + Sbjct: 61 FSPVPTSKMPQTPFSESEV-NFDAWTNLGVDALLTGSIKQNDQGDYVINYQLVDIVRGQL 119 Query: 139 IIGKK---------------------FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 GK R+ AH ISD +Y+ +TG++G F +RI Sbjct: 120 TGGKSKALGSDGELVLSKDHVLFNKVATVQGPRMREYAHRISDLVYEQLTGDRGAFMTRI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V + L V D DG N R + S+ Q L P +SP+ +K+AY ++ + Sbjct: 180 AYVVVN-DKDRFPYQLRVADYDGYNERLVLRSK-QPLMSPAWSPDGKKLAYVSFQNGQA- 236 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++M+ ++I ++ APRFS +G + I + K ++ +Y+ DL + ++ Sbjct: 237 EIFIMNIYTG-EREKITSYPRHNGAPRFSPDGNKLAIVLSKTGSLHVYTFDLNTRKLTQI 295 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T N + PD ++F SDR GK Q+Y + R++ + +P Sbjct: 296 TRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLGSGSIDRLTWQGSQNLGGQ-ITPD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + S F + + ++L + ++P+ +P+G +++S + Sbjct: 355 GRFLVMVNRSNAGFNLAKQDLETGALQVLTKTLLDESPSIAPNGGMVVYSSIYNKKN--V 412 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + ++GR + L T P W F+ Sbjct: 413 LSMVSIDGRFKARLPATNGRVRAPAWSPFL 442 >gi|94501020|ref|ZP_01307544.1| Periplasmic component of the Tol biopolymer transport system [Oceanobacter sp. RED65] gi|94426767|gb|EAT11751.1| Periplasmic component of the Tol biopolymer transport system [Oceanobacter sp. RED65] Length = 426 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 111/433 (25%), Positives = 209/433 (48%), Gaps = 14/433 (3%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 L+ VL+ S A + + + S + I+ F + L +V DL+RS Sbjct: 4 LIFVLLSFLIHASAKAELTIEISQGIASAIPISVVPFQVPEGLTTLPEGIVRNDLERSGH 63 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F +++ + S F DW L + +V GRV G D+ +V+++L+DV + + Sbjct: 64 FEVLAPKDMLSHP-HVQSDIYFTDWRLLKQEYVVVGRVTPLG-DKYQVQYQLFDVFNETE 121 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 I+ + + R +AH ISD IY+ +TG +G F+++I +V+ + + SL + D Sbjct: 122 ILAQTLTGTAEQLRDVAHRISDAIYEQLTGIRGAFSTKIAYVTTNPQ--RTQFSLAIADS 179 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DGA + + S I F P +SP+ +K+AY +DE +VY+ D + + I + Sbjct: 180 DGAREKVVLRSSYSI-FSPTWSPDGKKLAYVMMEDEGS-KVYIQDLATGQK-ELISAQKG 236 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + AP FS +G + +++ KD +IY+VDL++N R+T I+ ++ PD I+F Sbjct: 237 INSAPSFSPDGNKLALTLSKDGNSEIYTVDLRTNEWSRITRHYSIDTEPNWMPDGVHIIF 296 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVM 376 S R G Q+Y + +R++ D + + G + G F I + Sbjct: 297 TSGRSGSPQIYRVNVETEYVERLTFDGHYNARA-RLAQDGRFLVLVHQAERGGDFHIASL 355 Query: 377 KKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP- 434 ++L ED+ ++P+ SP+G ++++ K + S L ++ ++G + L+ + Sbjct: 356 DLTRGLLQILTEDTYLDESPSVSPNGVMVMYAAKHNNR--SILAAVSVDGDVKFLVPSKT 413 Query: 435 AYASDPQWVGFMD 447 +P W +++ Sbjct: 414 GDVREPAWGPYLN 426 >gi|294140561|ref|YP_003556539.1| tolB protein [Shewanella violacea DSS12] gi|293327030|dbj|BAJ01761.1| tolB protein [Shewanella violacea DSS12] Length = 442 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 107/447 (23%), Positives = 204/447 (45%), Gaps = 23/447 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 L L L + + A + + P+++ + + + ++S+VV DL Sbjct: 3 TLGKWLFLSLIILSSPVRAALDIVITEGVDAARPIAVIPFVWQGMGVMPEQISDVVMSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + Q+ + S +DW+S+ A+ ++ G V G D+ V F L D+ Sbjct: 63 TRSGTFKPLDDLGLPQRNISNVSQFVAKDWSSIEAEAVIMGSVKPRGNDQYLVTFDLVDL 122 Query: 134 KDRKQ-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + I ++ + A +R H ISD +Y+ +TG +G F + I +V Sbjct: 123 AKAQMQQGAGPRSSREYLIDSRETVITAAQFRHYGHRISDLVYEKLTGIRGAFLTHIAYV 182 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 L + D DG N + L S + L P +SP+ K+AY +++++ ++ Sbjct: 183 MVKHGE-KSPYQLMISDYDGHNEQMLLRSAEP-LMSPSWSPDGSKLAYVSFENKKS-EIF 239 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D ++ ++ +F+ + AP FS +GK+ +++ KD +IY +D+ + A +R+TN Sbjct: 240 IQDIYT-QSRHKVTSFKGINGAPVFSPDGKKLALTLSKDGQPEIYVIDIATKALKRVTNH 298 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ AS+ PD ++F S+R G+ Q+Y +R++ + E + V +P G Sbjct: 299 YAIDTEASWFPDGKSLIFTSERGGRPQIYKATLASGKVQRLTYEGEWNLGGSV-APDGRS 357 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + F + KF I M + ++L ++P+ +P+G +I+ DG L + Sbjct: 358 MIFVNRTNGKFNIARMDLETHFMQVLSSTRLDESPSVAPNGTMVIYGTTHDGKQ--VLGA 415 Query: 421 IDLNGRNE-TLINTPAYASDPQWVGFM 446 + +GR + L P W F+ Sbjct: 416 VSTDGRFKARLPAGQGEVKSPSWSPFL 442 >gi|226945713|ref|YP_002800786.1| translocation protein TolB [Azotobacter vinelandii DJ] gi|226720640|gb|ACO79811.1| Beta propeller TolB [Azotobacter vinelandii DJ] Length = 430 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 112/420 (26%), Positives = 202/420 (48%), Gaps = 12/420 (2%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 + V + +A +P+++ + + ++E+V DL+ S VF I + + Sbjct: 19 AQAADPLVVTSGTARATPIAVVPFGWQGGSVMSDDMAEIVGNDLRNSGVFEPIPRQNMIS 78 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + T P I ++DWN+LGAQ ++ G ++ G RL+V++ L +V +Q++ S Sbjct: 79 QPTGPGEII-YRDWNALGAQYVLVGNIVPAG-GRLQVQYALMNVATEQQVLAGSVSGSGD 136 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R +AH I+D ++ +TG KG F++R+L+V+ + G + +L D DGA L S Sbjct: 137 QVRDMAHYIADQAFEKLTGIKGAFSTRLLYVTAERMGGGTRYTLQRADYDGARAVILLQS 196 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ I PRF+P+ +++AY +++ + R+++ R ++I NF + AP FS +G Sbjct: 197 REPI-LSPRFAPDGRRIAYVSFEQKRP-RIFIQHIDTGR-REQITNFEGLNGAPAFSPDG 253 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + KD +IY ++L S +R+TN I+ + D + F SDR GK Q+Y Sbjct: 254 SRLAFVLSKDGNPEIYVMNLASRQLQRVTNHFGIDTEPFWGADGQTLYFTSDRAGKPQIY 313 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLV 387 G +R+S + +P S + F + R+L Sbjct: 314 RQTI-GGGAERVSFVGNYNA-NPKLSADEKTLVMIHRQDGYTNFKVAAQDLQRGTLRVLS 371 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGFM 446 + S ++PT +P+G LI++ + G L +NGR + T +P W ++ Sbjct: 372 DTSLDESPTVAPNGTMLIYATRHQGRG--VLMLASINGRVRLPLPTAQGEVREPSWSPYL 429 >gi|82703827|ref|YP_413393.1| translocation protein TolB [Nitrosospira multiformis ATCC 25196] gi|82411892|gb|ABB76001.1| TolB-like protein [Nitrosospira multiformis ATCC 25196] Length = 441 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 208/450 (46%), Gaps = 18/450 (4%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M++ + K++ ++ + A + + + + +A F + Sbjct: 1 MAIAMLPTPSRSHKLSGYAAVLFFLWLVCSPAQAALNIEIFGGGANQIPVAIVPFSGEEG 60 Query: 61 LGGK-VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 LG + ++ V+S DLQR+ +F L+ + P + F DW + GA L G I Sbjct: 61 LGAQSLTPVISADLQRTGLFKLVDPGGL--RPHEPVEVS-FPDWINRGASALAIGTAIPV 117 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 ++ + RL DV + ++ +P R AH I+D IY+ +TG+ G F++RI + Sbjct: 118 SGGQISIRVRLLDVARQAELGSYVETVAPEQLRAAAHRIADMIYEKLTGDVGVFSTRIAY 177 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + K SL V D DG N + + + I+ P +SP+ ++AY +++++ V Sbjct: 178 VIKQG----KKYSLQVADADGFNAQPVIEYTEPII-SPAWSPDGTRLAYVSFENKKP--V 230 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + T R K + NFR AP +S +G++ + + I+ ++ +RLT Sbjct: 231 VYVQTLATRTRKAVANFRGSNSAPAWSPDGRKLAVVLSVMGGSQIFLINSDGGGLQRLTQ 290 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---RISQDKEASYFDPVWSP 356 + I+ S+SPD I+F SDR G Q+Y M G K R++ + + P +SP Sbjct: 291 SSGIDTEPSFSPDGRYIIFTSDRGGSPQIYRMPVTGGVSKVAERLTFEGSYNV-SPRYSP 349 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G F SG++F + + Q RLL + ++P+++P+GR ++++ + G Sbjct: 350 DGKGFTFIHRSGDRFNVAIQDFATGQVRLLTDSRFDESPSFAPNGRMVLYATEIRGRGI- 408 Query: 417 KLYSIDLNGRNETLINTP-AYASDPQWVGF 445 L ++ +GR ++T +P W Sbjct: 409 -LSAVSSDGRTRQQLSTQTGDIREPAWGPL 437 >gi|212634657|ref|YP_002311182.1| translocation protein TolB [Shewanella piezotolerans WP3] gi|226705893|sp|B8CLE4|TOLB_SHEPW RecName: Full=Protein tolB; Flags: Precursor gi|212556141|gb|ACJ28595.1| TolB protein [Shewanella piezotolerans WP3] Length = 442 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 203/443 (45%), Gaps = 21/443 (4%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 LL L+ P + + P+++ + + ++S+VV DL RS Sbjct: 7 WLLASLLICSMPAKAALDIVITEGVDAARPIAVVPFVWQGTGPMPSQISDVVMSDLARSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F+ + S Q+ + + + W + A+ +V G + G D+ V F+L D+ + Sbjct: 67 TFSPSDELSLPQRNISTLAQFDAKAWMAQPAEAVVMGSIKPYGADKYLVSFQLIDLVKAQ 126 Query: 138 Q-------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 I ++ S A +R+ H ISD +Y+ +TG +G F +RI +V Sbjct: 127 LQSGAGPQAANDLVIDSRETVISAAQFRQYGHRISDVVYEKLTGIRGAFLTRIAYVVVKH 186 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N + L S + L P +SP+ Q++AY ++++ V++ + Sbjct: 187 GE-KSPYQLMISDYDGYNEQMLLRSPEP-LMSPSWSPDGQQLAYVSFENRKA-EVFVQNI 243 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 +A K++ +F + AP FS +GK+ +++ KD DIY VD+ ++A +R+TN I+ Sbjct: 244 YT-QARKKVTSFNGINGAPVFSPDGKKLALTLSKDGQPDIYVVDIATSALKRVTNHYSID 302 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+ PD ++ S+R G+ QLY + + R++ + E + +P G I F Sbjct: 303 TEPSWFPDGKSLLLTSERGGRPQLYRVFLDSGKISRLTFEGEWNLGG-SIAPDGRSIVFV 361 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + KF I M + ++L ++P+ +P+G +I+ G L ++ ++ Sbjct: 362 NRTNGKFNIARMDLETRFMQVLTSTRLDESPSLAPNGTMVIYGTTYQGKQ--VLAAVSMD 419 Query: 425 GRNE-TLINTPAYASDPQWVGFM 446 GR + L P W F+ Sbjct: 420 GRFKARLPVGQGEVKSPSWSPFL 442 >gi|239815673|ref|YP_002944583.1| translocation protein TolB [Variovorax paradoxus S110] gi|239802250|gb|ACS19317.1| Tol-Pal system beta propeller repeat protein TolB [Variovorax paradoxus S110] Length = 408 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 109/416 (26%), Positives = 189/416 (45%), Gaps = 14/416 (3%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 A +V + + + IA F D K+SE+V DL+RS F + + Sbjct: 3 PALAQFRVEVSGVGLTQLPIALVPFKGQDASPQKISEIVQADLERSGQFRGVDASG---Q 59 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 + S P W A LV G V + R V FRLWDV + + G+ + Sbjct: 60 ALDEASRPDLALWRQRTADSLVVGSVTRLADGRFDVRFRLWDVVRGQDLGGQSYTVPQGD 119 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R +H I+D +Y+ +TG+KG F++RI +V+ G + SL V D DG N + S Sbjct: 120 LRLASHRIADYVYEKLTGDKGIFSTRIAYVT----KGGSRYSLWVADADGENAQAALASP 175 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + I+ P +S N Q++AY +++ + VY+ + + + + NFR AP ++ +G Sbjct: 176 EPII-SPVWSSNGQQLAYVSFESRKPV-VYVHNVASGQ-RRLLANFRGSNSAPAWAPDGG 232 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 +++ +D +Y++ RLT + I+ YS D S I F SDR G Q+Y Sbjct: 233 SLAVTLSRDGGSQLYTIPASGGEPRRLTQSASIDTEPVYSADGSTIYFVSDRGGAPQIYK 292 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++G R++ + P S G +A+ G F + VM+ + + S Sbjct: 293 MSASGGAPTRVTFSGTYN-ISPSVSGDGRWLAYISRVGGAFKLHVMELATGNVSAITDTS 351 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+++P+ + ++++ G L + L+G+ L +P W F Sbjct: 352 ADESPSFAPNSKLIVYATHLQGR--EALMTTTLDGKIKARLAGQGGDIREPDWGPF 405 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 15/178 (8%) Query: 141 GKKFFSSPAS---WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 G + ++ PAS R++ + S D + + S I FVS+ + + M Sbjct: 243 GSQLYTIPASGGEPRRLTQSASIDTEPVYSADG----STIYFVSDRGGAP----QIYKMS 294 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 G +T S P S + + +AY + ++++M+ Sbjct: 295 ASGGAPTRVTFSG-TYNISPSVSGDGRWLAYIS-RVGGAFKLHVMELATGNVSAI--TDT 350 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 S +P F+ N K + + + + L RL + P Q Sbjct: 351 SADESPSFAPNSKLIVYATHLQGREALMTTTLDGKIKARLAGQGGDIREPDWGPFQKQ 408 >gi|192362452|ref|YP_001981531.1| tolB protein [Cellvibrio japonicus Ueda107] gi|190688617|gb|ACE86295.1| tolB protein [Cellvibrio japonicus Ueda107] Length = 427 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 115/433 (26%), Positives = 212/433 (48%), Gaps = 14/433 (3%) Query: 20 LLVLIGGFFPTSIHAFVK-VATNSANYSPVSIAFTKFVSIDE-LGGKVSEVVSKDLQRSD 77 L+ ++ F HA + V + +P+ IA F L VS ++ D + S Sbjct: 4 LVFILFSVFAMVAHAQMNNVIVTQSVQNPIKIAVVPFDWAGGRLPEDVSSIIRNDFRFSG 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F+ I+ + + I ++DW LGA+ L+ G + ++ R + L+DV ++ Sbjct: 64 QFDPIAPERMLSFPVSEVGIH-YRDWKVLGAEYLLIGSLTQQA-GRYYASYELFDVVKQQ 121 Query: 138 QIIGK-KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 ++ K + R IAH ISD +Y++ITG +G F++++++V + L + Sbjct: 122 RVFAKLTVDGTELQLRDIAHHISDKVYETITGIRGIFSTKLIYVEAY--QHPQRYRLMLS 179 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DGA R L SR I P +SPN Q+VAY +++ E+ +Y+MD R +++ +F Sbjct: 180 DIDGARSRALLDSRFPI-LSPVWSPNGQRVAYVSFEAENKPAIYIMDIATQR-RQQMTSF 237 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R + AP +S +G++ + + KD +IY +++ + +R+TN I+ S++ D + + Sbjct: 238 RGLNGAPSWSPDGQKLAMVLSKDGNPEIYVMNVLTRQLDRVTNHFAIDSEPSWAADGASL 297 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGV 375 F SDR GK Q+Y + Q+R++ D + + V SP G + K G + I Sbjct: 298 YFTSDRGGKPQIYQVNLATKQQERVTFDGDYNARSRV-SPDGKYLVVLNKRPGGNYHIAA 356 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-INTP 434 R+L E + ++P+ +P+G L+++ + G L ++ L+ R + L Sbjct: 357 QDLKTGNLRILSETNLDESPSIAPNGAMLMYATRSGGKG--VLAAVSLDARVKILQPPKQ 414 Query: 435 AYASDPQWVGFMD 447 +P W F + Sbjct: 415 GDVREPAWSPFFN 427 >gi|134294844|ref|YP_001118579.1| translocation protein TolB [Burkholderia vietnamiensis G4] gi|166229977|sp|A4JBU1|TOLB_BURVG RecName: Full=Protein tolB; Flags: Precursor gi|134138001|gb|ABO53744.1| TolB, N-terminal domain protein [Burkholderia vietnamiensis G4] Length = 431 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 190/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTANDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGHWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPTDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|118574588|sp|Q2Y5H0|TOLB_NITMU RecName: Full=Protein tolB; Flags: Precursor Length = 437 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 110/430 (25%), Positives = 201/430 (46%), Gaps = 18/430 (4%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK-VSEVVSKDLQRSDVF 79 ++ + A + + + + +A F + LG + ++ V+S DLQR+ +F Sbjct: 17 VLFFLWLVCSPAQAALNIEIFGGGANQIPVAIVPFSGEEGLGAQSLTPVISADLQRTGLF 76 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 L+ + P + F DW + GA L G I ++ + RL DV + ++ Sbjct: 77 KLVDPGGL--RPHEPVEVS-FPDWINRGASALAIGTAIPVSGGQISIRVRLLDVARQAEL 133 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 +P R AH I+D IY+ +TG+ G F++RI +V + K SL V D D Sbjct: 134 GSYVETVAPEQLRAAAHRIADMIYEKLTGDVGVFSTRIAYVIKQG----KKYSLQVADAD 189 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + + + I+ P +SP+ ++AY +++++ V + T R K + NFR Sbjct: 190 GFNAQPVIEYTEPII-SPAWSPDGTRLAYVSFENKKP--VVYVQTLATRTRKAVANFRGS 246 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G++ + + I+ ++ +RLT + I+ S+SPD I+F Sbjct: 247 NSAPAWSPDGRKLAVVLSVMGGSQIFLINSDGGGLQRLTQSSGIDTEPSFSPDGRYIIFT 306 Query: 320 SDREGKEQLYVMQSNGSDQK---RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 SDR G Q+Y M G K R++ + + P +SP G F SG++F + + Sbjct: 307 SDRGGSPQIYRMPVTGGVSKVAERLTFEGSYNV-SPRYSPDGKGFTFIHRSGDRFNVAIQ 365 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-A 435 Q RLL + ++P+++P+GR ++++ + G L ++ +GR ++T Sbjct: 366 DFATGQVRLLTDSRFDESPSFAPNGRMVLYATEIRGRGI--LSAVSSDGRTRQQLSTQTG 423 Query: 436 YASDPQWVGF 445 +P W Sbjct: 424 DIREPAWGPL 433 >gi|94496181|ref|ZP_01302759.1| TolB-like protein [Sphingomonas sp. SKA58] gi|94424360|gb|EAT09383.1| TolB-like protein [Sphingomonas sp. SKA58] Length = 444 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 153/424 (36%), Positives = 225/424 (53%), Gaps = 19/424 (4%) Query: 35 FVKVATNSANYSPVSIAFTKF----------VSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 + V S + IA S +LG K++EV++ DL+ S +F+ Sbjct: 27 QLSVDVTGDIDSNLKIAVPPMPAQQEADTPAGSASDLGRKIAEVIASDLKSSGLFDPSGP 86 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR-LRVEFRLWDVKDRKQIIGKK 143 + P++Q W + Q LV G V G + + V L+DV ++++ + Sbjct: 87 SGLPAIPFPEVTFPQYQKWGAY--QALVQGFVRTSGGEADITVGCYLYDVALQQELTRQG 144 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + +P WR+ AH +D IY ++GE F+SRI +++ES G L +MD DGAN Sbjct: 145 YVVAPRDWRRAAHKCADAIYARLSGESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANH 204 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 R++T + I PRFSP+ + + Y +Y +R+Y+ D + + + + AP Sbjct: 205 RFITNGQS-IALTPRFSPDYKSIVYVSY-LGSRVRLYVYDIGTGQQ-RLVTESNNPTFAP 261 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R+S +G+ L S+ DIY V + RLTN+ I++ SYSPD S+IVFESDR Sbjct: 262 RWSPDGRNILFSMAVAGNTDIYRVSANGGSPVRLTNSPGIDVGGSYSPDGSRIVFESDRS 321 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +QLYVM ++GS+Q+RIS Y P WSP+GDLIAFTK SG+ F I VM +G E Sbjct: 322 GGQQLYVMNADGSNQRRISHGG-GRYATPEWSPRGDLIAFTKLSGD-FKIAVMSPNGDNE 379 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQW 442 R+L + PTWSP+GR L F R G G S+++ +DL G NE I TP SDP W Sbjct: 380 RILTNGWQDEQPTWSPNGRVLQFFRTTPGRQGTSQVWQVDLTGVNERRIPTPLSGSDPAW 439 Query: 443 VGFM 446 + Sbjct: 440 GPLL 443 >gi|119896708|ref|YP_931921.1| translocation protein TolB [Azoarcus sp. BH72] gi|166229974|sp|A1K2H9|TOLB_AZOSB RecName: Full=Protein tolB; Flags: Precursor gi|119669121|emb|CAL93034.1| putative translocation protein TolB [Azoarcus sp. BH72] Length = 427 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 103/418 (24%), Positives = 191/418 (45%), Gaps = 14/418 (3%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 S A + + A S + F + L VS++V DL+RS +F+L+ Sbjct: 20 SFSAQAQLSIEITGAGASRFPVIIPVFENEASLPRSVSDIVRADLERSGLFSLVDIGPLP 79 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 IP S GA + V +G R + FRL+D + + ++ + Sbjct: 80 LP---EGQIPDLGSLRSRGADAALAASVFPQGDGRYEIRFRLFDTQKQTELGALALRMTA 136 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 A R AH I+D +Y+ +TG G F +RI +V ++ + L V D DG N + Sbjct: 137 AQNRITAHRIADFVYEKLTGLPGYFATRIAYVVKTGP----RYELQVADADGMNAQAALV 192 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 SR+ I+ P +SP+ ++AY +++ + + + T + + NF+ AP +S + Sbjct: 193 SREPII-SPAWSPDGGRLAYVSFEAKKP--IIYVHTLATGQRQVVANFKGSNSAPAWSPD 249 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G++ + + KD +Y ++ + RL ++ I+ ++SPD I F SDR G Q+ Sbjct: 250 GQQLSVVLTKDGLSQLYVLNADGSGVRRLASSSGIDTEPAWSPDGQWIYFTSDRGGSPQI 309 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + + G +R++ D + S G L+AF + +F + V Q +L + Sbjct: 310 YRIPTAGGAAQRVTFDGTYNVTA-RPSADGRLLAFITRNNGRFQVAVQDLTTRQTTILTD 368 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + ++P+++P+GR ++++ G L ++ +GR + L A +P W Sbjct: 369 SARDESPSFAPNGRMILYATDAGGRG--VLAAVSSDGRVKQRLSVQAADVREPAWGPL 424 >gi|254253146|ref|ZP_04946464.1| TolB [Burkholderia dolosa AUO158] gi|124895755|gb|EAY69635.1| TolB [Burkholderia dolosa AUO158] Length = 432 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 106/443 (23%), Positives = 190/443 (42%), Gaps = 17/443 (3%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +++ Sbjct: 3 LMTKLGFRALVASCLIAASG---GAANAQVNVLITGVGSTQFPIATANFANEAGLPQQIT 59 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V +E + +V Sbjct: 60 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREANGQYKV 116 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 117 NFILYDTVKQQSLGGLSLTANDNTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 175 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 176 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 230 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G +++ IYSV+ RLT + I+ Sbjct: 231 GRRY-MVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNANGGGLRRLTQSNSIDTE 289 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 290 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 348 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + ++ ++P+++ +G+ ++++ + G D Sbjct: 349 ISRTGGGFKLYVQDLQTGAANAITNTNHDESPSFAANGQYILYATQSGGRNVLAAVPSDG 408 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 409 SAPPQILSVQGGSVREPSWGPFM 431 >gi|312796780|ref|YP_004029702.1| TolB protein [Burkholderia rhizoxinica HKI 454] gi|312168555|emb|CBW75558.1| TolB protein [Burkholderia rhizoxinica HKI 454] Length = 430 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 105/444 (23%), Positives = 196/444 (44%), Gaps = 21/444 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + ++L +K + LLV G S A + V + IA F + +++ Sbjct: 3 LIKKLGLKTLVASLLVTAG----VSARADLTVLVTGVGSTQFPIAVASFTNEASSPQQIA 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V +L RS F+ I S + W + GA V G V + + V Sbjct: 59 AIVRANLARSGKFSNIDAGSAP---VSESDSVDLGGWKAKGANAFVGGSVTRLANGQYEV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 FRL+D ++ + G S + R AH +D IYQ + G +G F +R+ +V+ Sbjct: 116 RFRLYDTIKQQSLGGLSLVSPESGLRMSAHKAADYIYQKLLGSRGMFATRLSYVTRHGG- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N S + I+ P +SP+ K+AY +++ + + VY+ D Sbjct: 175 ---RYQLKISDSDGQNEHIALTSPEPII-SPTWSPDGTKLAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G + +++ I+ V+ + RLT I+ Sbjct: 230 GRRV-MVSDQKGNNSAPAWSPDGTKLAVALSLTGNTQIFIVNADGSGLRRLTRGHSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++SPD I F SDR G+ Q+Y M + G S +R++ + + V SP G +A+ Sbjct: 289 PAFSPDGQSIYFTSDRGGQPQIYKMPAQGESASAAQRVTFNGSYNTSARV-SPDGKELAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + L + + ++P+++ +G+ L+++ + +G L ++ Sbjct: 348 ISRVGGAFRLYLQDLSTGSATALTDTTRDESPSFAANGQYLLYATQVNGRQ--VLAAVST 405 Query: 424 NGRNETLINTP-AYASDPQWVGFM 446 +G +++ P +P W FM Sbjct: 406 DGSIRQVLSIPGGGVREPSWGPFM 429 >gi|85710724|ref|ZP_01041788.1| translocation protein TolB precursor [Erythrobacter sp. NAP1] gi|85687902|gb|EAQ27907.1| translocation protein TolB precursor [Erythrobacter sp. NAP1] Length = 473 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 149/409 (36%), Positives = 217/409 (53%), Gaps = 17/409 (4%) Query: 48 VSIAFTKFV------------SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + IA F LG +++ V++ +L+ + +F DS + Sbjct: 67 LGIAIPSFATDSNRPTPANSDGTAALGREIARVITANLRNNGLFKPTGPDSLPEPRFQQI 126 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + P + W GA++LV G V G DRL V L+DV + ++I + + PA WR+ A Sbjct: 127 TAPSWSSWTGRGAEMLVHGYVRARGDDRLVVGCYLYDVALQDELIREGWVVRPADWRRAA 186 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H SD IY +TGE F+SRI +++E+ L VMD DGAN R+LT Sbjct: 187 HKCSDLIYARLTGESPFFDSRIAYIAETGPKDNRVKRLAVMDSDGANHRFLTLG-SATAL 245 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PR+SP+ K+ Y +Y D + R+Y+ D + + ++ LAPR+S +G+ L S Sbjct: 246 TPRYSPDYSKILYLSYVDGNP-RIYVYDIGSGQQT-LVTENQNPTLAPRWSPDGRHILYS 303 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + DIY V + +ERLT+T I+I SYSPD +IVFESDR G +Q YVM ++G Sbjct: 304 MAVAGNTDIYRVPVTGGRSERLTDTPGIDIGGSYSPDGRRIVFESDRSGTQQCYVMDADG 363 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 S+Q+RI+ P WSP+GD IAFT+ +G+ F + VM G R+L +AP Sbjct: 364 SNQRRITFFG-GRCATPEWSPRGDQIAFTRIAGD-FNVAVMTPSGGSLRVLTNGWQDEAP 421 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 TW+P+GR + F R S L+ +DL GRNE + TP ASDP W Sbjct: 422 TWAPNGRIIQFFRTTRDAGRSSLWQVDLTGRNERRLPTPVDASDPAWGP 470 >gi|325981318|ref|YP_004293720.1| Tol-Pal system beta propeller repeat-containing protein TolB [Nitrosomonas sp. AL212] gi|325530837|gb|ADZ25558.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosomonas sp. AL212] Length = 432 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 103/430 (23%), Positives = 203/430 (47%), Gaps = 17/430 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 LL + +S+HA + + S + I F L ++ V++ DLQR+ +F Sbjct: 12 LLFWLLWLVSSSLHAQLNIEIFGGGASRIPITIVPFAEESRLQQNITPVINADLQRTGLF 71 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 LI +P + + DW + G LV GRV D++ ++FR+ D+ + Q+ Sbjct: 72 RLIDPA--GSSPHSPAEVA-YADWANRGVNALVIGRVTHLSGDQVEIQFRVMDIAKKSQL 128 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G R AH I+D IY+++TG+ G F++RI +V + K +L V D D Sbjct: 129 TGLAITVPTTQLRAAAHRIADVIYEALTGDVGVFSTRIAYVLKRGN----KYALQVADAD 184 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + + + I+ P +SP+ ++AY +++++ V + T R + + NF+ Sbjct: 185 GYNAQSIIEYTEPII-SPAWSPDGNQLAYVSFENKKP--VVYVQTLSTRERRAVANFKGS 241 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +GK+ + + I+ V+ + +RL+ + I+ S+SPD ++F Sbjct: 242 NSAPAWSPDGKKLAVVLTGQGGSQIFLVNTDGSGLQRLSRSSGIDTEPSFSPDGRYLLFT 301 Query: 320 SDREGKEQLYVMQ---SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 SDR G Q+Y M + S+ +R++ + + P +S F + +F + V Sbjct: 302 SDRGGSPQIYRMPVTAAESSNAERLTFEGSYNV-SPDYSHDNKSFTFIHRNNNQFNVAVQ 360 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPA 435 + Q +L ++P+++P+G+ ++++ + +G L ++ +G+ ++ Sbjct: 361 EIGSRQIEILTNSKFDESPSFAPNGKMILYATEINGHGI--LSAVSRDGQTRQQLSVQAG 418 Query: 436 YASDPQWVGF 445 +P W Sbjct: 419 DIREPAWGPL 428 >gi|90022174|ref|YP_528001.1| translocation protein TolB [Saccharophagus degradans 2-40] gi|119371059|sp|Q21HP0|TOLB_SACD2 RecName: Full=Protein tolB; Flags: Precursor gi|89951774|gb|ABD81789.1| TolB-like protein [Saccharophagus degradans 2-40] Length = 445 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 108/432 (25%), Positives = 196/432 (45%), Gaps = 13/432 (3%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L L+L+L G A + + +P IA F L VS ++S DL R Sbjct: 23 ALSLMLILAAGM----ARAELVIEITQGADNPTPIAVVPFGGNGGLSENVSRIISADLDR 78 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S +F S ++ + I ++DW LG LV G + + E+ L+DV Sbjct: 79 SGLFESKSPENMLSFPSKQADI-FYRDWRILGTDYLVIGDIQRSESG-YVAEYGLYDVLQ 136 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 +K+++GK P R +AH ISDD+YQ++TG +G F+++IL++ + S + L Sbjct: 137 QKKMLGKVLSVGPTGLRDMAHKISDDVYQALTGIRGAFSTKILYIEDMGPSVKERYRLIK 196 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DGA + + S + L P +S + +VAY +++ I +++ N Sbjct: 197 ADADGAREQLIFKSSEP-LLSPAWSNDLTQVAYVSFETSRP--AIFRHNLITGKREQLTN 253 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--INISASYSPDS 313 F+ + AP +S + + + + KD +IY +D+ + A +R+T T I+ +++ D Sbjct: 254 FKGLNGAPAWSPDDSKLALVLSKDGNPEIYILDIATRALQRVTKTHSAVIDTEPNWTADG 313 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 I+F S+R G Q+Y + +R++ + + + P +P G + F I Sbjct: 314 KGIIFTSNRGGNPQIYQVGLATGRVERLTFEGDYNAR-PRVTPDGKSLVMVHREDGVFHI 372 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 R+L E ++P+ +P+G L+++ + + SID G L + Sbjct: 373 AWQDIQSGDMRILTETWLDESPSIAPNGAMLLYATQHNNKGVLAAVSIDA-GVKFRLPSK 431 Query: 434 PAYASDPQWVGF 445 +P W + Sbjct: 432 QGSVREPAWSPY 443 >gi|332286926|ref|YP_004418837.1| TolB protein [Pusillimonas sp. T7-7] gi|330430879|gb|AEC22213.1| TolB protein [Pusillimonas sp. T7-7] Length = 436 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 117/448 (26%), Positives = 207/448 (46%), Gaps = 23/448 (5%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 MSLR+ L + L++I HA ++V + + IA F D Sbjct: 11 MSLRWRAW-------ALGIFLLVISLAAARPSHAQLRVDISGVGATQYPIAIADFSG-DA 62 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 G VSEV+ DL RS F L++ N +S ++W GA L G + + G Sbjct: 63 QGQNVSEVIRADLTRSGQFRLVNATGA---NLNTESTIAHEEWRGRGADYLAYGSISQSG 119 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + V +RL D + Q+ G F + R+I+H I+D IY+ ITG +G F++RI +V Sbjct: 120 -GQYSVSYRLVDTVRKTQLDGVAFSGTEKELRRISHQIADRIYEKITGVRGVFSTRIAYV 178 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ + L + D DG N + + S+ I+ P +SP+ +++AY +++ V Sbjct: 179 LQTGNT----YELQIADADGQNPQVMLRSKQSII-SPAWSPDGKRLAYVSFETGKP--VV 231 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + T + NF+ AP +S NG+ I + +D IY+++ + R+ + Sbjct: 232 YVQTLSSGQRVPLANFKGNNSAPAWSPNGQNLAIVLSRDSISQIYTINADGSGLRRVMRS 291 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ Y+ D ++F SDR G +Y + +G D +RI+ + + P SP G+ Sbjct: 292 PMIDTEPQYTADGGSLIFTSDRGGSPHIYKVPVSGGDAQRITFNGSYN-ISPAISPDGNS 350 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + F I + E+LL + ++P+++P+G +++S + G S L Sbjct: 351 LVYVTRRNGAFRIALQNMGSGSEQLLTAGPDDESPSFAPNGMQILYSSVQGGR--SVLAV 408 Query: 421 IDLNGR-NETLINTPAYASDPQWVGFMD 447 ++GR +TL +P W F + Sbjct: 409 TSVDGRVRQTLSALNGKVREPTWGPFTN 436 >gi|157962385|ref|YP_001502419.1| translocation protein TolB [Shewanella pealeana ATCC 700345] gi|189035989|sp|A8H5P7|TOLB_SHEPA RecName: Full=Protein tolB; Flags: Precursor gi|157847385|gb|ABV87884.1| Tol-Pal system beta propeller repeat TolB [Shewanella pealeana ATCC 700345] Length = 440 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 198/445 (44%), Gaps = 21/445 (4%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 NL L+ + A + + P+++ + + ++S+VV DL Sbjct: 3 NLGKWLLTSLLICSMPVKAALDIIITEGVDAARPIAVIPFVWQGTGPMPSQISDVVMSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F+ + S Q+ + + W + A+ +V G + G D+ V F L D+ Sbjct: 63 ARSGTFSPADELSLPQRGISTLAQFNASAWMAQPAEAVVMGSIKPYGGDKYLVSFELIDL 122 Query: 134 KDRKQ-----------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + I ++ S A +R+ H ISD +Y+ +TG +G F +R+ +V Sbjct: 123 VKAQLQSDSMSTKDLVIDSRETVISAAQFRQYGHRISDVVYEKLTGIRGAFLTRVAYVVV 182 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + L + D DG N + L S + L P +SP+ Q +AY ++++ V++ Sbjct: 183 NHGE-KSPYKLMIADYDGYNEQMLLRSPEP-LMSPSWSPDGQSLAYVSFENRKA-EVFVQ 239 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + K I +F + AP FS +GK+ +++ KD ++Y VD+ + A +R+TN Sbjct: 240 NIYTQQRTK-ITSFDGINGAPVFSPDGKKLAVTLSKDGQPEVYVVDIATKAIKRVTNHYA 298 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ S+ PD ++ S+R G+ QLY + + R++ + E + SP G I Sbjct: 299 IDTEPSWFPDGKSLLITSERGGRPQLYRVFLDSGKISRLTFEGEWNLGG-SISPDGRSII 357 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 F KF I M + ++L ++P+ +P+G +I+ G L ++ Sbjct: 358 FVNRINGKFNIARMDLETRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--VLAAVS 415 Query: 423 LNGRNE-TLINTPAYASDPQWVGFM 446 ++GR + L P W F+ Sbjct: 416 MDGRFKARLPAGQGEVKSPSWSPFL 440 >gi|301632611|ref|XP_002945375.1| PREDICTED: protein tolB-like, partial [Xenopus (Silurana) tropicalis] Length = 554 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 190/395 (48%), Gaps = 13/395 (3%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 A +V + + IA F + ++S +V DL+RS F I + Sbjct: 1 AQFRVEVTGVGLTQLPIALAPFRGEAQSPQRISAIVQADLERSGQFRGIDAAGA---ALD 57 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 S P W A LVTG +++ R V FRLWDV + + G+ F + R Sbjct: 58 EISRPDMAQWRQKSADSLVTGSIMRLADGRYDVRFRLWDVVRAQDLGGQSFVVNQGDLRL 117 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 +AH I+D +Y+ +TGE+G F++R+ +V+++ + SL V D DG N + S + I Sbjct: 118 VAHRIADFVYEKLTGERGVFSTRVTYVTKAGG----RYSLWVADADGENAQAALSSTEPI 173 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P ++PN ++AY +++ + VY+ D R + I NFR AP +S +G++ Sbjct: 174 I-SPAWAPNGTQLAYVSFESRKPV-VYVHDVASGR-RRLIANFRGSNSAPAWSPDGRQLA 230 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +++ +D + +Y++D RL + I+ +S D I F SDR G Q+Y + + Sbjct: 231 VTLTRDGSSQLYTIDANGGEPRRLMQSSGIDTEPVFSGDGRTIYFVSDRGGAPQIYKVGA 290 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G + +R++ + P SP G +A+ G F + M + + + + Sbjct: 291 TGGNAERVTFSGSYN-ISPSVSPDGRWLAYISRVGGAFKLHAMDLGTGAVNAITDTTADE 349 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 P+++P+ R ++++ ++ G L + L+G+ + Sbjct: 350 NPSFAPNSRLIVYATQQQGR--EALMTTTLDGKIK 382 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S+++ + + G+ L+V ++G + + E P W+P G +A+ F K Sbjct: 138 STRVTYVTKAGGRYSLWVADADGENAQAALSSTE-PIISPAWAPNGTQLAYVSFESRKPV 196 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETL 430 + V + RL+ + AP WSP GR L + +DG S+LY+ID N G L Sbjct: 197 VYVHDVASGRRRLIANFRGSNSAPAWSPDGRQLAVTLTRDGS--SQLYTIDANGGEPRRL 254 Query: 431 INTPAYASDPQWVG 444 + + ++P + G Sbjct: 255 MQSSGIDTEPVFSG 268 >gi|124266539|ref|YP_001020543.1| translocation protein TolB [Methylibium petroleiphilum PM1] gi|124259314|gb|ABM94308.1| TolB protein precursor, periplasmic component of the Tol biopolymer transport system [Methylibium petroleiphilum PM1] Length = 421 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 109/412 (26%), Positives = 201/412 (48%), Gaps = 14/412 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +V + + + IA KF ++ V +V DL+RS VF + + + Sbjct: 21 QFRVEISGVGATQLPIAVVKFRDEEKAPQPVGAIVRADLERSGVFRNLDTSGV---VLDE 77 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 S P DW A LV G V + R V +RLWDV + + G+ + R Sbjct: 78 GSQPAMSDWRGRSADALVGGSVTRLADGRFDVRYRLWDVVKGRDLGGQSYAVPAGDLRLA 137 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D IY+ +TGEKG F++RI +V+ G + +L V D DG + S + I+ Sbjct: 138 AHRIADAIYEKLTGEKGVFSTRIAYVT----KGGGRFTLWVTDADGEGGQSALASPEPII 193 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +++AY +++ + VY+ + + + + +FR AP +S +G++ + Sbjct: 194 -SPAWSPDGRELAYVSFESRKAV-VYVQEVASGK-RRTLASFRGSNSAPAWSPDGRQLAL 250 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D ++ + +RLT++ I+ A+++PD I F SDR G Q+Y + + Sbjct: 251 TLSRDGGSQLFVMGRDGEGVKRLTSSGAIDTEATWAPDGKSIYFVSDRGGSPQIYRVPAG 310 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G + +R+S + P SP G +A+ G F + VM R + + + ++ Sbjct: 311 GGNAERVSFSGSYN-ISPAISPDGRTMAYISRDGGAFRVQVMDLASGTARAVSDTKDDES 369 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 P+++P+GR +I++ + G L + +G+ L++T A +P W + Sbjct: 370 PSFAPNGRLIIYATRDGGR--DVLMTTTTDGKIKARLVSTQADVREPVWGPY 419 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 8/139 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I FVS+ S + + G N ++ S P SP+ + +AY + D Sbjct: 291 SIYFVSDRGGSP----QIYRVPAGGGNAERVSFSGS-YNISPAISPDGRTMAYISRD-GG 344 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 RV +MD R + +P F+ NG+ + + + + + Sbjct: 345 AFRVQVMDLASG--TARAVSDTKDDESPSFAPNGRLIIYATRDGGRDVLMTTTTDGKIKA 402 Query: 296 RLTNTLFINISASYSPDSS 314 RL +T + P Sbjct: 403 RLVSTQADVREPVWGPYGR 421 >gi|167623622|ref|YP_001673916.1| translocation protein TolB [Shewanella halifaxensis HAW-EB4] gi|189035988|sp|B0TPX8|TOLB_SHEHH RecName: Full=Protein tolB; Flags: Precursor gi|167353644|gb|ABZ76257.1| Tol-Pal system beta propeller repeat TolB [Shewanella halifaxensis HAW-EB4] Length = 440 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 104/441 (23%), Positives = 199/441 (45%), Gaps = 19/441 (4%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 LL+ L+ P + + P+++ + + ++S+VV DL RS Sbjct: 7 WLLVTLLICSMPVKAALDIVITEGIDAARPIAVIPFVWQGTGPMPSQISDVVMSDLARSG 66 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F+ + S Q+ + + W + A+ +V G + G D+ V F L D+ + Sbjct: 67 TFSPADELSLPQRGISTLAQFNASAWMTQPAEAVVMGSIKPYGGDKYLVSFELIDLVKAQ 126 Query: 138 Q-----------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 I ++ + A +R+ H ISD +Y+ +TG +G F +RI +V + Sbjct: 127 LQPDSQSAQDLVIDSRETIITAAQFRQYGHRISDVVYEKLTGIRGAFLTRIAYVVVNHGE 186 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L + D DG N + L S + L P +SP+ Q++AY ++++ +Y+ + Sbjct: 187 -KSPYKLMISDYDGYNEQMLLRSPEP-LMSPSWSPDGQRLAYVSFENRKA-EIYVQNIYT 243 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + +F + AP FS +GK+ +++ KD ++Y VD+ + A +R+TN I+ Sbjct: 244 -QQRTNVTSFDGINGAPVFSPDGKKLAVTLSKDGQPEVYVVDIATKAIKRVTNHYAIDTE 302 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+ PD ++ S+R G+ QLY + + R++ + E + +P G I F Sbjct: 303 PSWFPDGKSLLITSERGGRPQLYRVFLDSGKISRLTFEGEWNLGG-SIAPDGRSIIFVNR 361 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + KF I M + ++L ++P+ +P+G +I+ G L ++ ++GR Sbjct: 362 TNGKFNIARMDLETRFMQVLTSTRLDESPSVAPNGTMVIYGTTYQGKQ--VLAAVSMDGR 419 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W F+ Sbjct: 420 FKARLPVGQGEVKSPSWSPFL 440 >gi|120554619|ref|YP_958970.1| translocation protein TolB [Marinobacter aquaeolei VT8] gi|120324468|gb|ABM18783.1| TolB, N-terminal domain protein [Marinobacter aquaeolei VT8] Length = 442 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 110/438 (25%), Positives = 205/438 (46%), Gaps = 12/438 (2%) Query: 9 EELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG--KVS 66 L + CL+L L A + + S + IA F + KV Sbjct: 12 NFLKTPVIACLVLFLTASL---GARAELLIRITEGAGSAIPIAVVPFAESGSMPAGDKVG 68 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL S F + + + F+DW LG + ++ G++ + G DR++ Sbjct: 69 SIVQADLTMSGEFRPLEPSKMLSLPSERSEV-YFRDWRMLGQRYVLVGQLTRNG-DRIQA 126 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L+DV K+I+G+ ++ R + H ISD +Y++ITG G F++++ +++ S Sbjct: 127 RYELFDVNQEKRILGETAAVPASNLRSLGHHISDRVYEAITGAPGVFSTKLAYITVSGEG 186 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L V D DG + SR+ I P +SP+ +K+AY +++ V + Sbjct: 187 EQTRYRLQVSDVDGKRSKVRLESREPI-LSPAWSPDGKKLAYVSFETGKP--VIFVHELA 243 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 +++ +F + AP +S++G+ L+++ +D +IY +DL S RLT+ I+ Sbjct: 244 TGERQKVADFPGLNSAPAWSADGRSLLMTLSRDGNAEIYRMDLASRNLTRLTDHWAIDTE 303 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A++ I F SDR G QLY M+ G++ +RI+ + P SP GD + + Sbjct: 304 AAWDHADRGIYFTSDRSGGPQLYHMERPGAEPRRITFGSRYNAR-PRPSPTGDYVYYVHQ 362 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 F I + +E ++ + ++P+ +P+GR LI++ +++G+ + S D G Sbjct: 363 RDSAFHIARTNLETGEETVITRTGSDESPSVAPNGRLLIYATRQNGEGVLTVVSADG-GA 421 Query: 427 NETLINTPAYASDPQWVG 444 +L + +P W Sbjct: 422 AYSLPASEGEVREPAWGP 439 >gi|114319404|ref|YP_741087.1| TolB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|122941253|sp|Q0AC40|TOLB_ALHEH RecName: Full=Protein tolB; Flags: Precursor gi|114225798|gb|ABI55597.1| TolB, N-terminal domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 428 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 119/432 (27%), Positives = 210/432 (48%), Gaps = 15/432 (3%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKD 72 +C L +L+ G + HA + + +A F E+ ++ V+S + Sbjct: 7 TVCTLALLLVGL--QAAHADDIIDVIGGQEGAMPVAVIPFAVTGEIPTPDQDIARVISDN 64 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L RS F ++ ++ + D RF W +LG LVTGR+ +G R+ V F L D Sbjct: 65 LARSGRFEVLPREELVARPAGLDDT-RFSAWRALGMDYLVTGRMEMDGH-RVSVTFELLD 122 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V +I G+++ P + R +AH ISD +++ + G G F ++I +V + + Sbjct: 123 VFRGNRIEGRRYRLHPDNLRSLAHAISDIVFEEVVGLPGVFGTQIAYVQVEERNDQRIHR 182 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG R + SR I P +SP + ++AY +++ +Y+ + R + R Sbjct: 183 LMVADADGQRPREILESRQPI-MSPAWSPERDRLAYVSFEGGRS-EIYVQNLRSGQ-RDR 239 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I +FR + AP +S +G+ +++ +D +IY + L RLT+ I+ ++SPD Sbjct: 240 IASFRGINSAPAWSPDGRHLAVTLSRDGRANIYLLRLDDGHVRRLTDHWAIDTEPTFSPD 299 Query: 313 SSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +I F SDR G+ Q+Y + NG +R++ D + + P WSP G IA F Sbjct: 300 GERIAFTSDRGGRPQVYTLAVNGPGGVERVTFDGDYNAR-PNWSPDGRRIAMVHRHNGSF 358 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETL 430 I V + + R+L + ++P ++P+G +++S G S+L ++ ++GR N+ L Sbjct: 359 RIAVHDLESDRTRVLTDGPWDESPVFAPNGDMIMYSA--GGSGDSRLRTVSVHGRANQAL 416 Query: 431 INTPAYASDPQW 442 +P W Sbjct: 417 PRAGGLTREPAW 428 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 6/181 (3%) Query: 269 GKRALISVQKDEAMD----IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 G + ++ + D + + +S ++SP+ ++ + S G Sbjct: 164 GTQIAYVQVEERNDQRIHRLMVADADGQRPREILESRQPIMSPAWSPERDRLAYVSFEGG 223 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + ++YV + RI+ + + P WSP G +A T + I +++ D R Sbjct: 224 RSEIYVQNLRSGQRDRIASFRGIN-SAPAWSPDGRHLAVTLSRDGRANIYLLRLDDGHVR 282 Query: 385 LLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 L + + PT+SP G + F+ + G +++ G E + Y + P W Sbjct: 283 RLTDHWAIDTEPTFSPDGERIAFTSDRGGRPQVYTLAVNGPGGVERVTFDGDYNARPNWS 342 Query: 444 G 444 Sbjct: 343 P 343 >gi|113868785|ref|YP_727274.1| translocation protein TolB [Ralstonia eutropha H16] gi|113527561|emb|CAJ93906.1| periplasmic component of the Tol biopolymer transport system [Ralstonia eutropha H16] Length = 457 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 98/416 (23%), Positives = 186/416 (44%), Gaps = 18/416 (4%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + V + S + +A F + ++ ++ DL RS + Sbjct: 55 QLNVEISGVGSSQIPVATANFQGEAQAPQNLTAIIRADLARSGRLRNVDPGGA---TVAE 111 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + W S GA V G V + V FRL+D + + G F + + R Sbjct: 112 SANVDLGSWKSRGADAFVAGSVTPAAGGKYEVRFRLYDTVKGQSLGGLAFTVNQSQLRVT 171 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D IY+ + GE+G F +R+ +VS+ + L + D DG N + S + I+ Sbjct: 172 AHKIADYIYEKLLGERGVFATRLSYVSKVGG----RYQLLISDSDGQNAQVALTSNEPII 227 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +VAY +++ + + VY+ D + + N + AP +S +G+ + Sbjct: 228 -SPSWSPDGARVAYVSFEAKKPV-VYVHDLASGK-RTLVSNQKGNNSAPSWSPDGRHLAL 284 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y V+ + RL+ + I+ YSPD I F SDR G Q+Y M ++ Sbjct: 285 ALSRDGNTQVYQVNADGSGIRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAS 344 Query: 335 ---GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 G +R++ + P SP G +A+ +G F + + L + +N Sbjct: 345 GEEGGGAQRVTFKGSYNV-SPRVSPDGKYLAYISRAGG-FKLQLQDLSNGDVTSLTDTAN 402 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 +AP+++ +G+ ++++ + G + L ++ +GR +++ +P W FM Sbjct: 403 DEAPSFAANGKYILYATRVGGR--AVLAAVSTDGRTRQVLSLQSGDVREPSWGPFM 456 >gi|325522835|gb|EGD01305.1| translocation protein TolB [Burkholderia sp. TJI49] Length = 431 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 190/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGS----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V +EG + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREGNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ ++ R H I+D IYQ + G +G F +R+ +V +S Sbjct: 116 NFILYDTVKQQSLGGLSLTANDSTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKSGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPSWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + AP +S +G +++ IY+V+ RLT + I+ Sbjct: 230 G-HRYIVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNSTGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PYYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|149375117|ref|ZP_01892889.1| Periplasmic component of the Tol biopolymer transport system [Marinobacter algicola DG893] gi|149360481|gb|EDM48933.1| Periplasmic component of the Tol biopolymer transport system [Marinobacter algicola DG893] Length = 427 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 110/432 (25%), Positives = 209/432 (48%), Gaps = 9/432 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--GKVSEVVSKDLQR 75 LL++++ + HA + + S + +A F ++ KVS +V DL Sbjct: 3 WLLMLMVMIGSSPAAHAELLIRITEGADSAIPVAVVPFAETGQIPSGDKVSSIVRDDLTM 62 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + + ++ D + F+DW LG + ++ G++ + G D++ + L+DV Sbjct: 63 SGEFKPLPPEKMLSLPSSGDEV-YFRDWRLLGQRYVLVGQLTRTG-DKIEARYELFDVNR 120 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++I+G SS S R +AH ISD +Y++ITG G F++++ +V+ G L V Sbjct: 121 EERILGATASSSVNSTRSLAHHISDKVYEAITGVPGAFSTKLAYVTLQRSGGKALYRLQV 180 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG R S D+ + P +SP+ +++AY +++ +Y+ + K I + Sbjct: 181 SDVDGKRARVRLES-DEPILSPAWSPDGKRLAYVSFETGKPA-IYIHELSSGNRTK-IAD 237 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR + AP +S +G+ L+++ KD ++Y +D+QS + +RLT+ I+ ++ Sbjct: 238 FRGLNSAPAWSPDGRSLLLTLSKDGNAEVYKMDIQSRSLKRLTSHWSIDTEPTWDHTGKG 297 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 F SDR G Q+Y S ++ +RI+ + P G + + + F I Sbjct: 298 FFFTSDRSGGPQIYHKSSESAEPRRITFGSRYNAR-PRPDNDGKYVYYVHQRDKAFHIAR 356 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 +E +L + ++P+ SP+GR LI++ K+ GD+ + + D G +L + Sbjct: 357 TNLQTEEETILTRTESDESPSVSPNGRMLIYATKQGGDSVLTVIAADG-GAAYSLPASEG 415 Query: 436 YASDPQWVGFMD 447 +P W ++ Sbjct: 416 DVREPAWSPIVE 427 >gi|223673843|pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal gi|223673844|pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal gi|223673845|pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 96/417 (23%), Positives = 186/417 (44%), Gaps = 13/417 (3%) Query: 35 FVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 V++ +S P+ + ++ + +V+ DL+ S FN + + Q+ Sbjct: 1 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPG 60 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPAS 150 + + + W++LG +V G+V V ++L D + + + Sbjct: 61 SAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW 119 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 120 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRS 177 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 Q L P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G Sbjct: 178 PQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y Sbjct: 236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + NG +RI+ + + D S G + +G + I ++L Sbjct: 296 VNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF 354 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + P+ +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 355 LDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 >gi|71278150|ref|YP_268469.1| translocation protein TolB [Colwellia psychrerythraea 34H] gi|119371042|sp|Q484P6|TOLB_COLP3 RecName: Full=Protein tolB; Flags: Precursor gi|71143890|gb|AAZ24363.1| tolB protein [Colwellia psychrerythraea 34H] Length = 449 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 117/457 (25%), Positives = 208/457 (45%), Gaps = 31/457 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 MK+ ++ + F A +++ + P++I + E +S+V+S Sbjct: 1 MKLLSNIVFGALIAFTSVKAMAALEIVITGGVDSARPIAIIPFNWTGTGERPELLSKVIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F+ I+ D F Q I++ +I + W +LGA+ ++ G + + R +V ++L Sbjct: 61 DDLLRSGKFSPIAIDRFPQTISDAKAI-DYSAWANLGAEAVLLGNINEVAPGRYQVSYQL 119 Query: 131 WDVKDRKQIIGKKFFSSPASW--------------------RKIAHTISDDIYQSITGEK 170 DV + G+ S R+ AH+IS+ IY+ +TG K Sbjct: 120 VDVIRGQITGGETSMLSNGELVNPKDHILAQSSANIQLNQARRYAHSISNVIYEKLTGSK 179 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F S+I +V G L D DG N L S++ L P + PN ++AY + Sbjct: 180 GAFLSKIAYVIVR-DQGKYPYQLAFADYDGFNEHVLLSSKEP-LMSPSWHPNGDQLAYVS 237 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 +++ +++ +D K I +F + APRFS +GK + + KD D+Y ++L Sbjct: 238 FENRQA-QIHSIDIYTG-VRKSISSFNGINSAPRFSPDGKSMAMVLSKDGNPDLYVMELA 295 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + R+T I+ S++PD + ++F S+R GK QLY + G +R++ D E + Sbjct: 296 TMKLRRITRNRAIDTEPSWTPDGNSLIFSSERGGKPQLYRVDLAGGKVRRLTFDGEVNLG 355 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 V +P G + + K+ + + ++L E ++P+ SP+G +I+S Sbjct: 356 GSV-TPDGKQLIMVNRTRGKYRLAKQELSSGLFQVLTETRLDESPSVSPNGGMIIYSTLH 414 Query: 411 DGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L S+D GR + L P W F+ Sbjct: 415 NNRQVLGLVSVD--GRFKARLPALDGQVKAPAWSPFL 449 >gi|326388397|ref|ZP_08209993.1| translocation protein TolB [Novosphingobium nitrogenifigens DSM 19370] gi|326207129|gb|EGD57950.1| translocation protein TolB [Novosphingobium nitrogenifigens DSM 19370] Length = 478 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 210/411 (51%), Gaps = 17/411 (4%) Query: 48 VSIAFTKF------------VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + IA F + + +G ++ VV DL+ + +F DS Sbjct: 72 LGIAIPSFPTDRPVATGAEGGNTEAVGRNLARVVFNDLKFNGLFKPTGPDSLPGIAYAEV 131 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + P F W + A++LV G V RL V L+DV +++ + + P WR+ A Sbjct: 132 TAPAFSGWRARSAEMLVQGFVKGGADGRLTVGCYLYDVALGQELAREGYVVKPEDWRRAA 191 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H +D +Y ++GE F+S+I +++E+ + L +MD DGAN R++T + Sbjct: 192 HKCADMVYSRLSGESPFFDSKIAYIAETGPKDHRRKQLAIMDSDGANHRFITNGQ-ATAL 250 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 PR+SP+ K+ Y +Y D R+Y+ D + + + APR+S +GK L S Sbjct: 251 TPRYSPDYSKILYLSYLDGRP-RIYVYDIGSGSQ-RLVTEGKGPTFAPRWSPDGKSILYS 308 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + DIY V +ERLTNT INI S+SPD +IVFESDR G +Q+YVM S+G Sbjct: 309 MAIAGNTDIYRVPASGGPSERLTNTPGINIGGSFSPDGRKIVFESDRSGSQQVYVMNSDG 368 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 S Q RIS P WSP+GD IAFT +G + VM DG+ R L + +AP Sbjct: 369 SGQHRISFFG-GRAATPEWSPRGDQIAFTHIAG-NLRVAVMDPDGNNLRYLTDSWQDEAP 426 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 TW+P+GR + F R + + ++ +DL GRNE + TP ASDP W + Sbjct: 427 TWAPNGRIIQFFRTEKNTGHTSIWQVDLTGRNERRLKTPVDASDPAWGPVL 477 >gi|288940690|ref|YP_003442930.1| Tol-Pal system beta propeller repeat-containing protein TolB [Allochromatium vinosum DSM 180] gi|288896062|gb|ADC61898.1| Tol-Pal system beta propeller repeat protein TolB [Allochromatium vinosum DSM 180] Length = 436 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 106/435 (24%), Positives = 201/435 (46%), Gaps = 9/435 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL--GGKVSEVVS 70 + +L ++++++ G + + S IA F + + L ++ ++ Sbjct: 7 LPRSLFVVVLILVGLGQALAAPRLNIEITGGIESAQPIAIVPFGTSEGLIPPVDMAAIIG 66 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL R+ F + + + F+DW+ LG LV GRV + R+ F L Sbjct: 67 ADLARTGRFKPMPTRDMLDMPATREEV-DFRDWSLLGMNNLVIGRVEPDPTG-YRISFSL 124 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV ++ S+ + R+ AH I+D+I++ +TG+ G +RI +++ + + Sbjct: 125 FDVFRGTELASSSLVSTQSGMRQTAHRIADEIHEKLTGQPGVAATRIAYITSTGSGADLT 184 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V D DG N + + S + L P +SP+ Q++AY +++++ +Y+ + R Sbjct: 185 VTLRVADADGYNPQTIVSSAEP-LMSPAWSPDGQRLAYVSFENKRAA-IYIQELSSGR-R 241 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + + + +P FS +G R +++ KD DIYS++L S RLT+ I+ S+S Sbjct: 242 ELVASHPGINGSPAFSPDGSRLAMTLSKDGNPDIYSLNLLSRELTRLTDHYAIDTEPSWS 301 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD I+F SDR G Q+Y M + G +RIS + + + ++P G I Sbjct: 302 PDGQSIIFTSDRGGSPQIYRMAATGGPAERISVEGDYN-GRASYAPDGRSIVMVTRVNGA 360 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F IG + RLL ++P+++P+G +I++ S++ G + L Sbjct: 361 FRIGQLDLARGVTRLLSRGDLDESPSFAPNGAMVIYATIHGHRGVLATASVEGGGS-QRL 419 Query: 431 INTPAYASDPQWVGF 445 +P W Sbjct: 420 TQDSGQVREPAWSPL 434 >gi|223673842|pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 95/417 (22%), Positives = 186/417 (44%), Gaps = 13/417 (3%) Query: 35 FVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKIT 92 V++ +S P+ + ++ + +V+ DL+ S FN + + Q+ Sbjct: 1 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPG 60 Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPAS 150 + + + W++LG +V G+V V ++L D + + + Sbjct: 61 SAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW 119 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 120 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRS 177 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 Q L P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G Sbjct: 178 PQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y Sbjct: 236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + NG +RI+ + + D S G + +G + I ++L Sbjct: 296 VNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF 354 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + P+ +P+G +++S + GS L + +GR + L T P W ++ Sbjct: 355 LDETPSLAPNGTMVLYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 >gi|145579533|pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX gi|145579535|pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX gi|145579537|pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX gi|145579539|pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX Length = 415 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 96/416 (23%), Positives = 186/416 (44%), Gaps = 13/416 (3%) Query: 36 VKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 V++ +S P+ + ++ + +V+ DL+ S FN + + Q+ + Sbjct: 2 VRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGS 61 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPASW 151 + + W++LG +V G+V V ++L D + + + Sbjct: 62 AQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWL 120 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSP 178 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 Q L P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G + Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 236 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + Sbjct: 237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 NG +RI+ + + D S G + +G + I ++L Sbjct: 297 NINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL 355 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + P+ +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 356 DETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 >gi|71275796|ref|ZP_00652080.1| TolB, N-terminal [Xylella fastidiosa Dixon] gi|71900395|ref|ZP_00682528.1| TolB, N-terminal [Xylella fastidiosa Ann-1] gi|71163374|gb|EAO13092.1| TolB, N-terminal [Xylella fastidiosa Dixon] gi|71729827|gb|EAO31925.1| TolB, N-terminal [Xylella fastidiosa Ann-1] Length = 474 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 121/453 (26%), Positives = 218/453 (48%), Gaps = 16/453 (3%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKF--- 55 S+ F +L+M L +L+G FP S + + N + IA Sbjct: 25 SIIFLKVIDLHMTKFPRWLAILVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYH 84 Query: 56 VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 S VS VV+ DL RS F + ++ T+ I RF W +L +V GR Sbjct: 85 DSAGAPATDVSGVVAADLNRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGR 143 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V+ + RVE+ L+DV++ K+++G + ++ R +AH ++D IY+ ITG +G F + Sbjct: 144 VLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFT 203 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +V+ S G ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + Sbjct: 204 RIAYVTASGSHGAMRYALMVADSDGYNPQTIVRSAEP-LLSPDWSPDGKKLAYVSFE-KG 261 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + + +FR + AP F+ +G R +S+ + +IY +DL S Sbjct: 262 GSSIYIQDIATGS-RELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLI 320 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +LTN+ I+ +S D I F SDR G+ Q+Y + S G R++ + V S Sbjct: 321 QLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATASV-S 379 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 I + SG + I +M + L S ++P+++P+ ++++ ++ G Sbjct: 380 YDDKKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR 439 Query: 414 TGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 LY++ + R + L++ + +P W + Sbjct: 440 G--VLYAVSADARVRQRLVSVDSDVREPAWGPY 470 >gi|189184452|ref|YP_001938237.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda] gi|226705887|sp|B3CUF6|TOLB_ORITI RecName: Full=Protein tolB; Flags: Precursor gi|189181223|dbj|BAG41003.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda] Length = 453 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 149/415 (35%), Positives = 224/415 (53%), Gaps = 13/415 (3%) Query: 38 VATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 + N + + IA F + L + ++S DL S +F IS D F + Sbjct: 39 IKITKGNCTQIPIAINFFAAKSNEEHGLSQNIVSIISNDLNISKIFAPISSDLFIETEQG 98 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 IP F W+ + A +L+ G + K +V F +WDV K+I K F WR Sbjct: 99 VAHIPLFTAWSQINANILINGEITKIDSTDFKVTFVVWDVFSAKEITRKSFTFPSQLWRS 158 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 AH I+D IY+ +TG KG+FN++I++VSES S + +MD+DGAN Y+T ++ + Sbjct: 159 TAHKIADQIYKHVTGSKGNFNTKIVYVSESNSSKGKIRRIAIMDQDGANHNYITNGKNHV 218 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P FSPN ++ Y +Y ++ I V + D K + +F + +PRFS +G + L Sbjct: 219 I-TPVFSPNNNQILYVSYHNK-IPTVRIHDLNSGNN-KILASFNGITFSPRFSPDGNKIL 275 Query: 274 ISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S + IY ++L + ++LT IN S SYSPD S+I F SDR G Q+Y+M Sbjct: 276 VSNSSTKNVTHIYEINLLTGKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQIYIMN 335 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 G + KR++ + +Y P WSP + IAFTK +F+IGV+K DGS +R++ + Sbjct: 336 DQGGNIKRLTS-QPGAYTTPAWSPTNNYIAFTKIEAGEFSIGVIKLDGSNKRIIATKHLV 394 Query: 393 QAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + P+W+P G+++IFSR K T KLYS+D G NE I TP ASDP W Sbjct: 395 EGPSWAPDGKTIIFSRAYKATKSTSTKVKLYSVDCTGYNEREIQTPENASDPNWS 449 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 10/182 (5%) Query: 270 KRALISV----QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + + K + I +D +TN I+ +SP+++QI++ S Sbjct: 180 TKIVYVSESNSSKGKIRRIAIMDQDGANHNYITNGKNHVITPVFSPNNNQILYVSYHNKI 239 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQER 384 + + N + K I F P +SP G+ I + S + I + + + Sbjct: 240 PTVRIHDLNSGNNK-ILASFNGITFSPRFSPDGNKILVSNSSTKNVTHIYEINLLTGKIK 298 Query: 385 LLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPAYASDPQW 442 L + ++ +P++SP G + F + G T ++Y + D G + L + P + P W Sbjct: 299 QLTKGQSINTSPSYSPDGSKIAFVSDRSGST--QIYIMNDQGGNIKRLTSQPGAYTTPAW 356 Query: 443 VG 444 Sbjct: 357 SP 358 >gi|90408530|ref|ZP_01216687.1| TolB protein [Psychromonas sp. CNPT3] gi|90310349|gb|EAS38477.1| TolB protein [Psychromonas sp. CNPT3] Length = 437 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 97/431 (22%), Positives = 200/431 (46%), Gaps = 20/431 (4%) Query: 29 PTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 T A + + + P+++ K++ E ++ ++ DL+ S VF I+ D Sbjct: 15 STQAFARLDILITEGVNSARPIAVIPFKWLGTGEKPQDIARIIGNDLRSSGVFRPIAIDK 74 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK-DRLRVEFRLWDVKDRKQ------- 138 + +++ + W+ +G + +V G + + + + + L +V Sbjct: 75 MPSTPSRSETL-DYALWHKMGVEAIVMGEIKPASEPGKYTITYELLNVLTGNMSIKGLSP 133 Query: 139 -IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + ++ S +R AH ISD +Y+ +TGE+G F +RI +++ S L + D Sbjct: 134 VLEKRRSTLSATQFRHFAHRISDVVYEKLTGERGAFLTRIAYIAVDHRS-SHPYQLRIAD 192 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + + S+ I P +SP+ +K+ Y +++ + ++Y+ D + + + +F Sbjct: 193 YDGYAEKLILRSKQPI-MSPAWSPDGRKLVYVSFEKKKS-QIYIQDIYT-QKRELMTSFP 249 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + AP +S +GK + KD +IY++++ S A +R+T I+ S+SPD ++ Sbjct: 250 RINGAPSWSPDGKMLSFVLSKDGQAEIYTMNVMSKALKRITQNRVIDTEPSWSPDGKSLL 309 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F S+R G+ Q+Y + + KR++ + + + +P GD + S ++ I V Sbjct: 310 FTSERGGRPQIYQVDLSSMQTKRMTWEGDMNLGG-TITPDGDSLVLVSRSNGQYKISVQD 368 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAY 436 + R L + ++P+ +P+G +I+S G G L S+D GR + + Sbjct: 369 IASGELRTLTKTQLDESPSVAPNGSMIIYSTVYQGHKGLALVSMD--GRFKANIPAINGD 426 Query: 437 ASDPQWVGFMD 447 P W F++ Sbjct: 427 VKSPAWSPFLN 437 >gi|294626856|ref|ZP_06705448.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665411|ref|ZP_06730699.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598870|gb|EFF43015.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604822|gb|EFF48185.1| translocation protein TolB precursor [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 439 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 112/414 (27%), Positives = 208/414 (50%), Gaps = 11/414 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGG-KVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + SA+ +P+++ + VS VV DL RS F + +K T Sbjct: 29 IDIVGGSASATPIAVIPMPYQGSGAAPQTDVSAVVGADLDRSGQFRTLPAAQIVEKPTRG 88 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + +FQ W +L +V GRV+ G+ RVE+ L+DV ++++G + + R + Sbjct: 89 TEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRVEYELFDVAKGERLLGLAMTARANAMRDV 147 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 +H ++D IY+ ITG +G F +RI +V+ S G ++ +L V D DG N + + S + L Sbjct: 148 SHQMADAIYEKITGVRGAFWTRIAYVTASGKGGAMRYALMVADSDGYNPQTIVRSAEP-L 206 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +K+AY +++ + +YL D A + + +FR + AP FS +G+R + Sbjct: 207 LSPNWSPDGKKLAYVSFERGNS-SIYLQDIATG-ARELVSSFRGINGAPSFSPDGRRLAL 264 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ + +IY +DL S +LTN I+ +++PD I F SDR G+ Q+Y + ++ Sbjct: 265 ALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQIYQVAAS 324 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNL 392 G R++ + V S G IA + SG + I +M + L S Sbjct: 325 GGSANRVTFQGNYNATASV-SFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLD 383 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+++P+ ++++ ++ G LY++ + R + L+ +P W + Sbjct: 384 ESPSFAPNASMVLYAAREGGRG--VLYAVSSDARVRQRLVLADGDVREPAWGPY 435 >gi|187479385|ref|YP_787410.1| translocation protein TolB [Bordetella avium 197N] gi|119371036|sp|Q2KV91|TOLB_BORA1 RecName: Full=Protein tolB; Flags: Precursor gi|115423972|emb|CAJ50525.1| TolB protein [Bordetella avium 197N] Length = 441 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 113/418 (27%), Positives = 195/418 (46%), Gaps = 15/418 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 HA ++V + + IA F D G ++EV+ DL R+ F LI+ Sbjct: 35 QPAHAQLRVDISGTGATQYPIAIADFAGDDVRGRALAEVIRADLTRTGQFRLINAAGSGL 94 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + DS + DW GA + G + + R + +RL D + Q+ G F + Sbjct: 95 TV---DSPINYDDWRGRGADYVAYGSISQGADGRFEIRYRLADTVKKNQLDGVAFSGTEP 151 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R+IAH I+D IY+ ITG +G F +RI +V + + L V D DG N + S Sbjct: 152 ELRRIAHQIADRIYEKITGVRGVFATRIAYVLKQGNT----YELQVADADGQNPQVALRS 207 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ I+ P +SP+ K+AY ++ V + T R+ + NF+ AP +S +G Sbjct: 208 REPII-SPTWSPDGSKLAYVSFHSGKP--VVYVQTLATRSQIPVANFKGNNSAPAWSPDG 264 Query: 270 KRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + +++ +D IY V + R+T + I+ +++PD I+F SDR G Q+ Sbjct: 265 SQLAVALTQDGLSQIYIVSADGSAKPRRITRSPGIDTEPTFTPDGRSIIFTSDRSGGPQI 324 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + +G D +R++ + + P SP G + + F I + E LL + Sbjct: 325 YQVGLDGGDARRLTFNGSYN-ISPRISPDGSTLLYVARRDGAFRIASLNLPTGTETLLTD 383 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 384 GRDDQSPSFAPNGMQVLYAATQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 439 >gi|289207751|ref|YP_003459817.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio sp. K90mix] gi|288943382|gb|ADC71081.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio sp. K90mix] Length = 428 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 112/436 (25%), Positives = 203/436 (46%), Gaps = 12/436 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVS 70 M+ + +L + + A ++V + +A F EL +S++V+ Sbjct: 1 MRRLIHWMLPAMLLLWAAQAQAVLEVTVTEGVTGAIPVAVAPFTYEGEGELDEDISQIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +L RS +FN + QD + P W G + LV G ++G D L VEF + Sbjct: 61 ANLARSGLFN-VEQDDLPAAPSGPADFLA-GPWADAGVEYLVVGNQRRDGDDVL-VEFHV 117 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV +++ G + R+ AH ISD IY+ ITG+ G F++RI FVS + Sbjct: 118 FDVLSEERLGGWRIPVPGDMLRRGAHRISDIIYEQITGDPGAFSARIAFVSVERNGDERR 177 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V D DGAN R L S I P +SP+ +++ Y ++++ VY + Sbjct: 178 FALEVADSDGANPRTLFRSAKPI-MSPDWSPDGRELVYVSFENRRS-EVYRQNVETGS-R 234 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ +F + AP +S +G+ +S+ +D A +IY ++L++ ++T T I +S Sbjct: 235 ERVASFTGINSAPAWSPDGRYLALSLSRDGAPNIYLMELETGEMRQMTQTRSIETEPVWS 294 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD + F SDR G Q+Y + G +R++ + + V SP G + + Sbjct: 295 PDGETLYFTSDRAGAPQIYALPREGGSPRRLTFESGYAAAATV-SPDGRYLVYVHGGDGG 353 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NET 429 F + + + + L E + ++P+++P+G +I++ G L S+ +G+ ++ Sbjct: 354 FQLARLDLNDRRVTRLTEGRDAESPSFAPNGSMIIYAMTDGGRG--VLGSVSQDGQVHQR 411 Query: 430 LINTPAYASDPQWVGF 445 L +P W Sbjct: 412 LAAREGEVREPAWSPL 427 >gi|221201006|ref|ZP_03574046.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2M] gi|221206542|ref|ZP_03579555.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2] gi|221214396|ref|ZP_03587367.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD1] gi|221165653|gb|EED98128.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD1] gi|221173851|gb|EEE06285.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2] gi|221178856|gb|EEE11263.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans CGD2M] Length = 431 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 190/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGS----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V +EG + ++ Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREGNGQYKI 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLSANDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G +++ IYSV+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNSNGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGHWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|21232448|ref|NP_638365.1| translocation protein TolB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767469|ref|YP_242231.1| translocation protein TolB [Xanthomonas campestris pv. campestris str. 8004] gi|188990575|ref|YP_001902585.1| translocation protein TolB [Xanthomonas campestris pv. campestris str. B100] gi|32699705|sp|Q8P6F2|TOLB_XANCP RecName: Full=Protein tolB; Flags: Precursor gi|81306551|sp|Q4UXL2|TOLB_XANC8 RecName: Full=Protein tolB; Flags: Precursor gi|226705898|sp|B0RPZ2|TOLB_XANCB RecName: Full=Protein tolB; Flags: Precursor gi|21114229|gb|AAM42289.1| TolB protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572801|gb|AAY48211.1| TolB protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732335|emb|CAP50527.1| TolB protein [Xanthomonas campestris pv. campestris] Length = 439 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 112/422 (26%), Positives = 210/422 (49%), Gaps = 11/422 (2%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG-KVSEVVSKDLQRSDVFNLISQDS 86 F + + SA+ +P+++ + VS VVS DL RS F + Sbjct: 21 FAQQQGLTIDIVGGSASATPITVVPMPYQGSGTAPQTDVSAVVSADLDRSGQFRTLPAAQ 80 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 +K T + +FQ W +L +V GRV+ G+ RVE+ L+DV ++++G + Sbjct: 81 IVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRVEYELFDVAKGERLLGLAMTA 139 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 + R ++H ++D IY+ +TG +G F +RI +V+ S G ++ +L V D DG N + + Sbjct: 140 RANAMRDVSHQMADAIYEKVTGVRGAFWTRIAYVTASGSGGSMRYALMVADSDGYNPQTI 199 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S + L P +SP+ +K+AY +++ + +YL D A + + +FR + AP FS Sbjct: 200 VRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDIASG-ARELVSSFRGINGAPSFS 256 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+R +++ + +IY +DL S +LTN I+ +++PD I F SDR G+ Sbjct: 257 PDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTEPTWAPDGGSIYFTSDRGGRP 316 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--R 384 Q+Y + ++G R++ + V S G +A + SG + I +M + Sbjct: 317 QIYQVAASGGSANRVTFQGNYNATASV-SFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWS 375 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWV 443 L S ++P+++P+ ++++ ++ G LY++ + R + L+ +P W Sbjct: 376 TLSPGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADARVRQRLVLADGDVREPAWG 433 Query: 444 GF 445 + Sbjct: 434 PY 435 >gi|148284009|ref|YP_001248099.1| protein precursor [Orientia tsutsugamushi str. Boryong] gi|226705886|sp|A5CBX4|TOLB_ORITB RecName: Full=Protein tolB; Flags: Precursor gi|146739448|emb|CAM79084.1| protein precursor [Orientia tsutsugamushi str. Boryong] Length = 453 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 148/415 (35%), Positives = 224/415 (53%), Gaps = 13/415 (3%) Query: 38 VATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 + N + + IA F + +L + ++S DL S +F IS D F + Sbjct: 39 IKITKGNCTQIPIAINFFSAKSNEEHDLSQNIVSIISNDLNISKIFAPISSDLFIETEQG 98 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 IP F W+ + A +L+ G + K +V F +WDV K+I K F WR Sbjct: 99 VAHIPLFTAWSQINANILINGEITKIDSTDFKVTFVIWDVFSAKEITRKSFTFPSQLWRS 158 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 AH I+D IY+ +TG KG+FN++I++VSES S + +MD+DGAN Y+T ++ + Sbjct: 159 TAHKIADQIYKHVTGSKGNFNTKIVYVSESNSSNRKIRRIAIMDQDGANHNYITNGKNHV 218 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P FSP ++ Y +Y ++ I V + D K + +F + +PRFS +G + L Sbjct: 219 I-TPVFSPKNNQILYVSYHNK-IPTVRIHDLNSGNN-KILASFNGITFSPRFSPDGNKIL 275 Query: 274 ISVQKDEA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +S + IY ++L + ++LT IN S SYSPD S+I F SDR G Q+Y+M Sbjct: 276 VSNSSTKNVTHIYEINLLTGKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQIYIMN 335 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 G + KR++ + +Y P WSP + IAFTK +F+IGV+K DGS +R++ + Sbjct: 336 DQGGNIKRLTS-QPGAYTTPAWSPTNNYIAFTKIEAGEFSIGVIKLDGSNKRIIATKYLV 394 Query: 393 QAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + P+W+P G+++IFSR K T KLYS+D G NE I TP ASDP W Sbjct: 395 EGPSWAPDGKTIIFSRAYKATKSTSTKVKLYSVDYTGYNEREIQTPENASDPNWS 449 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 10/182 (5%) Query: 270 KRALISVQKDEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + + + + + I +D +TN I+ +SP ++QI++ S Sbjct: 180 TKIVYVSESNSSNRKIRRIAIMDQDGANHNYITNGKNHVITPVFSPKNNQILYVSYHNKI 239 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQER 384 + + N + K I F P +SP G+ I + S + I + + + Sbjct: 240 PTVRIHDLNSGNNK-ILASFNGITFSPRFSPDGNKILVSNSSTKNVTHIYEINLLTGKIK 298 Query: 385 LLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPAYASDPQW 442 L + ++ +P++SP G + F + G T ++Y + D G + L + P + P W Sbjct: 299 QLTKGQSINTSPSYSPDGSKIAFVSDRSGST--QIYIMNDQGGNIKRLTSQPGAYTTPAW 356 Query: 443 VG 444 Sbjct: 357 SP 358 >gi|148261881|ref|YP_001236008.1| TolB domain-containing protein [Acidiphilium cryptum JF-5] gi|146403562|gb|ABQ32089.1| TolB, N-terminal domain protein [Acidiphilium cryptum JF-5] Length = 469 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 164/450 (36%), Positives = 254/450 (56%), Gaps = 20/450 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAF-------VKVATNSANYSPVSIAFTKFV----SIDE 60 + L + G P A + + A+ +P+ IA F + + Sbjct: 24 PLSRRLMIGAGAAGLLLPGLARAQNAANGPSDAINVSGAHNAPIPIALPAFTDASGNTSD 83 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 +G ++++VV+ DL +F+ I SF + +S+P + +W+ LGAQ LVTG+V G Sbjct: 84 IGAQITQVVTSDLDHCGLFSAIDPTSFV-PNSVVNSVPVWNNWSILGAQALVTGQVTSPG 142 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 ++RVE+RLW + +KQ+ G + ++ +WR+IAH I+DDIYQ + GEKG F++R+ F+ Sbjct: 143 AGQIRVEYRLWGISQQKQLQGTAYTTASGNWRRIAHIIADDIYQQMIGEKGYFDTRVAFI 202 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + +MD DGAN+R+LT R+ + P+F+P +Q++A+ ++++ +VY Sbjct: 203 SVSGPPTSPIRRMALMDYDGANVRFLTSGRN-MALSPQFNPTRQQLAFVSFENNRP-QVY 260 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L D + A IG+F M PRFS +G L S+ K I DL S +LT+ Sbjct: 261 LFDLQTG-ARTNIGSFGDMSFGPRFSPDGSALLFSISKGGGAMIVKYDLGSRRMTQLTDA 319 Query: 301 LFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 IN++ YSPD ++IVF SDR+G +QL+VM ++GS+ +RIS A Y +P WSP+G Sbjct: 320 NSINVTPCYSPDGTKIVFNSDRDGSGDQQLFVMNADGSNVQRISY-GHARYAEPDWSPRG 378 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG--S 416 D IAFT+ F IGVMK DGS ERLL + + T+ P+GR ++F R+ G S Sbjct: 379 DAIAFTRLDSSGFGIGVMKPDGSGERLLSQGYLEEGATFCPNGRVIMFYRQSPLRVGNVS 438 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 L +I ++G NE + TP A DP W + Sbjct: 439 HLVTIGVDGFNERITPTPTNAEDPSWGPRL 468 >gi|170701073|ref|ZP_02892050.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ambifaria IOP40-10] gi|172059754|ref|YP_001807406.1| translocation protein TolB [Burkholderia ambifaria MC40-6] gi|226705867|sp|B1YTW7|TOLB_BURA4 RecName: Full=Protein tolB; Flags: Precursor gi|170134013|gb|EDT02364.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ambifaria IOP40-10] gi|171992271|gb|ACB63190.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ambifaria MC40-6] Length = 431 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 189/445 (42%), Gaps = 18/445 (4%) Query: 5 FFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK 64 + +L + + L+ GG + +A V V + IA F + L + Sbjct: 1 MRLMTKLGFRALVASCLIAAGG----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQ 56 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+ +V DL RS F I S + W + GA V G V +E + Sbjct: 57 VTSIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREANGQY 113 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 +V F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 114 KVNFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTG 173 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 174 N----RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDL 227 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 228 PTGRRY-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSID 286 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 287 TEPYYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRISPDGKLL 345 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ L+++ + G Sbjct: 346 AYISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPS 405 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 406 DGSAPPQILSVQGGSVREPSWGPFM 430 >gi|260219498|emb|CBA26343.1| Protein tolB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 408 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 105/419 (25%), Positives = 186/419 (44%), Gaps = 15/419 (3%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 A +V + + + +A F D+ K++ +V DL+RS F + S Sbjct: 1 MAALQAQAQFRVEVSGVGMTQIPVAIAAFRGEDQSPQKIAAIVQADLERSGQFKGVESGS 60 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 + + P GA LV G V + R V FRLWDV + + G+ Sbjct: 61 ----GLDESARPDLNVMRQRGADALVAGSVTRLADGRFDVRFRLWDVVRNQDLGGQSHAV 116 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 P R AH I+D +Y+ +TG+KG F++RI +V+++ + +L V D DG N + Sbjct: 117 LPGDLRLAAHRIADFVYERLTGDKGVFSTRISYVTKAGPT----YNLWVADADGENAQSA 172 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S + I+ P ++PN ++AY +++ + VY+ D R + + +F+ AP +S Sbjct: 173 LSSPEPII-SPSWAPNGNQLAYVSFEARKPV-VYVHDVATGR-RRLVASFKGSNSAPTWS 229 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+ +++ +D +Y +D RL + I+ Y+ D I F SDR G Sbjct: 230 PDGRSIALTLSRDGGSQLYVMDANGGEPRRLMQSPAIDTEPVYTSDGKTIYFVSDRGGSP 289 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+Y + + G +R++ + P SP G +A+ F + VM + Sbjct: 290 QIYRVPAGGGSAERVTFSGGYN-ISPALSPDGKWLAYVSRVNGAFKLHVMDIVSGSVSAI 348 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 + + + P++SP+ R +I++ G L + L+GR L +P W Sbjct: 349 TDKAADENPSFSPNSRLIIYAILLQGK--EALMTTTLDGRIKARLAGQGGDIREPDWGP 405 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 77/185 (41%), Gaps = 11/185 (5%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + +++ D + ++ IS S++P+ +Q+ + S K +Y Sbjct: 145 TRISYVTKAGPTYNLWVADADGENAQSALSSPEPIISPSWAPNGNQLAYVSFEARKPVVY 204 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V ++R+ + S P WSP G IA T + VM +G + R L++ Sbjct: 205 VHDVATG-RRRLVASFKGSNSAPTWSPDGRSIALTLSRDGGSQLYVMDANGGEPRRLMQS 263 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQ 441 + P ++ G+++ F + G ++Y + G + + +PA + D + Sbjct: 264 PAIDTEPVYTSDGKTIYFVSDRGGS--PQIYRVPAGGGSAERVTFSGGYNISPALSPDGK 321 Query: 442 WVGFM 446 W+ ++ Sbjct: 322 WLAYV 326 >gi|21243868|ref|NP_643450.1| translocation protein TolB [Xanthomonas axonopodis pv. citri str. 306] gi|78048828|ref|YP_365003.1| translocation protein TolB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325929357|ref|ZP_08190487.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas perforans 91-118] gi|32699706|sp|Q8PHV7|TOLB_XANAC RecName: Full=Protein tolB; Flags: Precursor gi|119371066|sp|Q3BQG0|TOLB_XANC5 RecName: Full=Protein tolB; Flags: Precursor gi|21109469|gb|AAM37986.1| TolB protein [Xanthomonas axonopodis pv. citri str. 306] gi|78037258|emb|CAJ25003.1| biopolymer transport TolB protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540269|gb|EGD11881.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas perforans 91-118] Length = 439 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 112/414 (27%), Positives = 208/414 (50%), Gaps = 11/414 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGG-KVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + SA+ +P+++ + VS VV DL RS F + +K T Sbjct: 29 IDIVGGSASATPIAVIPMPYQGSGTAPQTDVSAVVGADLDRSGQFRTLPAAQIVEKPTRG 88 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + +FQ W +L +V GRV+ G+ RVE+ L+DV ++++G + + R + Sbjct: 89 TEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRVEYELFDVAKGERMLGLAMTARANAMRDV 147 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 +H ++D IY+ ITG +G F +RI +V+ S G ++ +L V D DG N + + S + L Sbjct: 148 SHQMADAIYEKITGVRGAFWTRIAYVTASGKGGAMRYALMVADSDGYNPQTIVRSAEP-L 206 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +K+AY +++ + +YL D A + + +FR + AP FS +G+R + Sbjct: 207 LSPNWSPDGKKLAYVSFERGNS-SIYLQDIATG-ARELVSSFRGINGAPSFSPDGRRLAL 264 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ + +IY +DL S +LTN I+ +++PD I F SDR G+ Q+Y + ++ Sbjct: 265 ALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQIYQVAAS 324 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNL 392 G R++ + V S G IA + SG + I +M + L S Sbjct: 325 GGSANRVTFQGNYNATASV-SFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLD 383 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+++P+ ++++ ++ G LY++ + R + L+ +P W + Sbjct: 384 ESPSFAPNASMVLYAAREGGRG--VLYAVSSDARVRQRLVLADGDVREPAWGPY 435 >gi|161525756|ref|YP_001580768.1| translocation protein TolB [Burkholderia multivorans ATCC 17616] gi|189349522|ref|YP_001945150.1| translocation protein TolB [Burkholderia multivorans ATCC 17616] gi|226705870|sp|A9AFQ0|TOLB_BURM1 RecName: Full=Protein tolB; Flags: Precursor gi|160343185|gb|ABX16271.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia multivorans ATCC 17616] gi|189333544|dbj|BAG42614.1| TolB protein [Burkholderia multivorans ATCC 17616] Length = 431 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 189/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGS----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V EG + ++ Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNHEGNGQYKI 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLSANDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S +G +++ IYSV+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNSNGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYILYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|119477235|ref|ZP_01617471.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2143] gi|119449598|gb|EAW30836.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2143] Length = 429 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 102/434 (23%), Positives = 207/434 (47%), Gaps = 12/434 (2%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSP--VSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L+V + + A + + +P ++I + V+ ++ DLQR Sbjct: 4 IALIVFTLMALTSQVSAQLIIEITKGVDNPTAIAIVPFGWEGGGIPKEDVATIIETDLQR 63 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 + F+ + ++ + + F+DW +L L+ G+++ + L+ E+ L+DV Sbjct: 64 TGQFSPVPKEDMLSTPQDKSEV-YFRDWRALNVDYLLVGKLVPTAEG-LQAEYALFDVYT 121 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG-IIKNSLC 194 + ++ + S S R IAH ISD +YQ +TG +G F++++L+VS L Sbjct: 122 QALVLEDRQTGSAESLRDIAHGISDRVYQKLTGIRGAFSTKLLYVSAVGRGDAQYTYRLL 181 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D DGA R + S++ I P +SP+ + +AY +++ +Y + R + + + Sbjct: 182 ISDVDGARERIIFESQEPI-LTPSWSPDGETIAYVSFETTRPA-IYSHNLRTNERSQ-LT 238 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 NF+ + AP +S +GK+ + + KD + DIY + + + +R+T I+ S+ PD Sbjct: 239 NFKGLNGAPAWSPDGKQLAMVLSKDGSPDIYIMTVATRELKRVTRHFAIDTEPSWMPDGK 298 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +V+ SDR GK Q+Y + ++R++ + + V P G I S + I Sbjct: 299 SLVYTSDRGGKPQIYQVTLASGYEERVTFEGSYNAKAKVV-PAGGGIIMVHRSMGRDHIA 357 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 ++ + + +L E ++P+ +P+G L+++ K G L ++ L+G + + + Sbjct: 358 LLDIERGKINILTETDLDESPSIAPNGAILLYATKVRGKG--VLAAVSLDGGTKYFMPSR 415 Query: 435 -AYASDPQWVGFMD 447 +P W F++ Sbjct: 416 FGDVREPAWSPFLN 429 >gi|326405385|ref|YP_004285467.1| protein TolB [Acidiphilium multivorum AIU301] gi|325052247|dbj|BAJ82585.1| protein TolB [Acidiphilium multivorum AIU301] Length = 469 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 164/450 (36%), Positives = 254/450 (56%), Gaps = 20/450 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAF-------VKVATNSANYSPVSIAFTKFV----SIDE 60 + L + G P A + + A+ +P+ IA F + + Sbjct: 24 PLSRRLMIGAGAAGLMLPGLARAQNAANGPSDAINVSGAHNAPIPIALPAFTDASGNTSD 83 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 +G ++++VV+ DL +F+ I SF + +S+P + +W+ LGAQ LVTG+V G Sbjct: 84 IGAQITQVVTSDLDHCGLFSAIDPTSFV-PNSVVNSVPVWNNWSILGAQALVTGQVTSPG 142 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 ++RVE+RLW + +KQ+ G + ++ +WR+IAH I+DDIYQ + GEKG F++R+ F+ Sbjct: 143 AGQIRVEYRLWGISQQKQLQGTAYTTASGNWRRIAHIIADDIYQQMIGEKGYFDTRVAFI 202 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + +MD DGAN+R+LT R+ + P+F+P +Q++A+ ++++ +VY Sbjct: 203 SVSGPPTSPIRRMALMDYDGANVRFLTSGRN-MALSPQFNPTRQQLAFVSFENNRP-QVY 260 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L D + A IG+F M PRFS +G L S+ K I DL S +LT+ Sbjct: 261 LFDLQTG-ARTNIGSFGDMSFGPRFSPDGSALLFSISKGGGAMIVKYDLGSRRMTQLTDA 319 Query: 301 LFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 IN++ YSPD ++IVF SDR+G +QL+VM ++GS+ +RIS A Y +P WSP+G Sbjct: 320 NSINVTPCYSPDGTKIVFNSDRDGSGDQQLFVMNADGSNVQRISY-GHARYAEPDWSPRG 378 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG--S 416 D IAFT+ F IGVMK DGS ERLL + + T+ P+GR ++F R+ G S Sbjct: 379 DAIAFTRLDSSGFGIGVMKPDGSGERLLSQGYLEEGATFCPNGRVIMFYRQSPLRVGNVS 438 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 L +I ++G NE + TP A DP W + Sbjct: 439 HLVTIGVDGFNERITPTPTNAEDPSWGPRL 468 >gi|206561547|ref|YP_002232312.1| translocation protein TolB [Burkholderia cenocepacia J2315] gi|226705869|sp|B4EDC0|TOLB_BURCJ RecName: Full=Protein tolB; Flags: Precursor gi|198037589|emb|CAR53527.1| putative periplasmic TolB protein [Burkholderia cenocepacia J2315] Length = 431 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 106/443 (23%), Positives = 188/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAGS----AANAQVNVLITGVGSTQFPIATANFTNEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ L+++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|90417116|ref|ZP_01225044.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2207] gi|90331132|gb|EAS46388.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2207] Length = 440 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 101/418 (24%), Positives = 192/418 (45%), Gaps = 7/418 (1%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFV-SIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 + + + + N P IA + +S +V DL RS +F + + Sbjct: 28 SPSYGELVIRVTQGNDQPTKIAIAPIAMGGIQSSEDISAIVEADLARSGLFAPMERRDML 87 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 ++ + ++DW LGA+ LV G + + R ++EF L +V +K ++ K + Sbjct: 88 AFPSSASEV-YYRDWRLLGAEYLVAGNMRAISEGRYQIEFSLLNVSGQKTVLTHKVSGTS 146 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R +AH ISD +Y+ ITG +G F++R+ +V+ + ++ + L V D DGA + + Sbjct: 147 SQMRDLAHLISDKVYEEITGIRGAFSTRLAYVTATRINDVYTYRLNVADADGAREKLVLE 206 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S + I P +S N +++AY +++ + +++ NF + AP +S + Sbjct: 207 SGEPI-MSPAWSANGKELAYVSFETGRP--AIFRQNLVTAQREQLTNFTGLNGAPSWSPD 263 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK+ + + KD ++Y +DLQ+ RLT I+ ++ PD ++F SDR G Q+ Sbjct: 264 GKKMALVLSKDGNPELYLLDLQTKKFSRLTRHFAIDTEPTWMPDGKHLLFTSDRGGTPQI 323 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + +R++ + P +P G +A + F I + L E Sbjct: 324 YKLNIASKATERLTFSGNYNAR-PSLAPDGRTMAMVHRQRDTFHIASFDLKTGRMIELTE 382 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 ++PT +P+G L+++ K+ S+D G L ++ +P W F+ Sbjct: 383 TRLDESPTVAPNGAMLMYATKQGDRGVLAAVSLDA-GVRYVLPSSSGDVREPAWSPFL 439 >gi|311694926|gb|ADP97799.1| translocation protein TolB precursor [marine bacterium HP15] Length = 437 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 105/448 (23%), Positives = 209/448 (46%), Gaps = 14/448 (3%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M+ R + + L+ F ++ A + + S + +A F + Sbjct: 1 MTHRIWHKPSRTLLAATALIF-----FAVSAARAELLIRITEGADSAIPVAVVPFAESGQ 55 Query: 61 LGG--KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 + KVS +V DL + F + + + + + F+DW LG + ++ G + + Sbjct: 56 MPAGDKVSSIVQADLTMTGEFRTLPPEKMLSLPSRREEV-YFRDWRLLGQRYVLVGALSR 114 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 G DR++ + L+DV ++I+G+ + ++ R +AH ISD +Y++ITG G F++++ Sbjct: 115 SG-DRVQARYELFDVNREERILGETAAAPASNMRSLAHHISDKVYEAITGVPGAFSTKLA 173 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +++ +G + L V D DG R S++ I P +SP+ +K+AY +++ Sbjct: 174 YITLDTANGKPRYRLQVSDVDGKRARIRLESQEPI-LSPAWSPDGEKLAYVSFETGKP-- 230 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 V + ++ +F + AP +S +G+ L+++ KD +IY ++L + +LT Sbjct: 231 VIFVHELATGNRTKVADFPGLNSAPAWSDDGRSLLMTLSKDGNAEIYRMNLDTRQLTKLT 290 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N I+ SY I F SDR G Q+Y M + G++ +RI+ + P G Sbjct: 291 NHWAIDTEPSYDATGKGIFFTSDRSGGPQIYHMDTPGAEPRRITFGSRYNAR-PRPDNDG 349 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + F I + +E +L + ++P+ +P+GR LI++ +++G + Sbjct: 350 NYVYYVHQRDRAFHIARTELKTGEETILTRTESDESPSVAPNGRMLIYATRQNGSNVLTV 409 Query: 419 YSIDLNGRNETLINTPAYASDPQWVGFM 446 S D G +L + +P W + Sbjct: 410 ISADG-GAAYSLPASEGDVREPAWGPLV 436 >gi|170732122|ref|YP_001764069.1| translocation protein TolB [Burkholderia cenocepacia MC0-3] gi|226705868|sp|B1JWH3|TOLB_BURCC RecName: Full=Protein tolB; Flags: Precursor gi|169815364|gb|ACA89947.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia cenocepacia MC0-3] Length = 431 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/443 (23%), Positives = 188/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +++ Sbjct: 3 LMTKLGFRALVASCLITAGS----AANAQVNVLITGVGSTQFPIATANFTNEANLPQQIT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNRDANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ L+++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|309786419|ref|ZP_07681045.1| tol-Pal system beta propeller repeat protein TolB [Shigella dysenteriae 1617] gi|308925813|gb|EFP71294.1| tol-Pal system beta propeller repeat protein TolB [Shigella dysenteriae 1617] Length = 405 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 185/412 (44%), Gaps = 11/412 (2%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI 97 + + + P+ + ++ + +V+ DL+ S FN + + Q+ + + Sbjct: 2 IDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV 61 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIA 155 + W++LG +V G+V V ++L D + + + R + Sbjct: 62 -QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAS 120 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Q L Sbjct: 121 HTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLM 178 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G + + Sbjct: 179 SPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA 236 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + NG Sbjct: 237 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 296 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +RI+ + + D S G + +G + I ++L + P Sbjct: 297 GAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP 355 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 356 SLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 405 >gi|332097645|gb|EGJ02620.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii 3594-74] Length = 405 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 184/412 (44%), Gaps = 11/412 (2%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI 97 + + + P+ + ++ + +V+ DL+ S FN + + Q+ + + Sbjct: 2 IDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV 61 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIA 155 + W++LG +V G+V V ++L D + + + R Sbjct: 62 -QPSAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAG 120 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Q L Sbjct: 121 HTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLM 178 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G + + Sbjct: 179 SPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA 236 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + NG Sbjct: 237 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 296 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +RI+ + + D S G + +G + I ++L + P Sbjct: 297 GAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP 355 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 356 SLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 405 >gi|117923781|ref|YP_864398.1| TolB domain-containing protein [Magnetococcus sp. MC-1] gi|117607537|gb|ABK42992.1| TolB, N-terminal domain protein [Magnetococcus sp. MC-1] Length = 450 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 234/428 (54%), Gaps = 23/428 (5%) Query: 32 IHAF-VKVATNSANYSPVSIAFTKFVS---------IDELGGKVSEVVSKDLQRSDVFNL 81 +HA + + P+ IA F S D +++ +V DL S +F Sbjct: 28 VHAQGMMIEVQKQGLEPMPIAIPSFASVGLNGHVEVGDRFSHQLTGLVISDLSGSGLFRP 87 Query: 82 ISQDSFKQKITNP-DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + Q F Q P F+ W +GA +V G + G R++V+F L D+ I Sbjct: 88 LEQRGFLQPSDKLWQQGPDFRKWRLVGADAVVQGAITYRGS-RIQVDFFLHDISRGTLIG 146 Query: 141 -GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G +F + P +WR +AH ++D+IY +TGE+ F SRI FV++ ++ L +MD D Sbjct: 147 KGWRFTTKPENWRHVAHRVADEIYTRLTGERAYFTSRIAFVAKR----DKQSFLSMMDAD 202 Query: 200 GANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 GAN L R+ ++ PRFSPN +++ Y +Y+ + R+YL D + KR N+ Sbjct: 203 GANRMDLKVKGRNDLVLTPRFSPNGEQLLYISYESSEP-RIYLWDLYTGKRVKR-SNYPG 260 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + P +S +G R +++ KD +IY +D+++ + +RLT I+ S S+SPD ++VF Sbjct: 261 LNSTPAWSPDGNRMALTLSKDGNSEIYVIDMRNQSLQRLTYNAAIDTSPSWSPDGRRMVF 320 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G QLY+M ++GSD +R++Q ++S P WS +GD IAF + G KF I V+ Sbjct: 321 TSDRAGTPQLYIMDADGSDVRRLTQRGQSS-TAPSWSNRGDKIAFVRGGGGKFRIAVIDP 379 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-- 436 G E+LL + ++PTWSP+GR ++FSR++ G + ++L++ID+ G NE + Sbjct: 380 TGRDEQLLTDSWMDESPTWSPNGRVILFSRQQQGSSRTRLFTIDITGFNEQEVPLEQDIS 439 Query: 437 ASDPQWVG 444 ASDP W Sbjct: 440 ASDPSWSP 447 >gi|167837694|ref|ZP_02464577.1| translocation protein TolB [Burkholderia thailandensis MSMB43] Length = 433 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 193/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 59 SVVRADLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTIKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 176 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRISPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G + Sbjct: 348 AYISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSAPPQILSVQGGAIREPSWGPFM 432 >gi|330975321|gb|EGH75387.1| translocation protein TolB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 399 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 103/405 (25%), Positives = 199/405 (49%), Gaps = 12/405 (2%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E++S Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D S + F SDR GK Q+Y NG +R++ + +P S + Sbjct: 296 GKDGSTLYFTSDRGGKPQIYKTNINGGGAERVTFVGNYNA-NPKLSADEKTLVMIHRQDG 354 Query: 370 --KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 F + V ++L + + ++PT +P+G +I++ ++ G Sbjct: 355 FTNFKVAVQDLARGSVKILTDSNLDESPTVAPNGTMVIYATRQPG 399 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S+ + L +G+ + Q +E P ++P G IA+ F ++ I V D Sbjct: 174 SENNTRYTLQRSDYDGARAVTLLQSRE-PILSPRFAPDGKRIAYVSFEQKRPRIFVQHID 232 Query: 380 GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA 437 + + + AP WSP G L F KDG ++Y I+L R + N + Sbjct: 233 TGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG--NPEIYVINLASRQLSRVTNDSSID 290 Query: 438 SDP 440 ++P Sbjct: 291 TEP 293 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + ++ + DG++ L++ + +P ++P G+ + + + + ID Sbjct: 174 SENNTRYTLQRSDYDGARAVTLLQSREPILSPRFAPDGKRIAYVSFEQKRPRIFVQHID- 232 Query: 424 NGRNETLINTPAYASDPQWVG 444 GR E + N P W Sbjct: 233 TGRREQITNFEGLNGAPAWSP 253 >gi|163854963|ref|YP_001629261.1| translocation protein TolB [Bordetella petrii DSM 12804] gi|163258691|emb|CAP40990.1| TolB protein precursor [Bordetella petrii] Length = 439 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 117/418 (27%), Positives = 196/418 (46%), Gaps = 15/418 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 HA ++V + + +A F D G ++EV+ DL R+ F LIS Sbjct: 33 QPAHAQLRVDISGTGATQYPVAIADFAVDDVHGRAIAEVIRADLTRTGQFRLISAAG--- 89 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 N DS + DW + GA L G + + R V +RL D + Q+ G F S Sbjct: 90 SGLNVDSPVAYDDWRTKGADFLAYGSITRGADGRYDVRYRLADTVKKGQLDGVAFSGSEQ 149 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + S Sbjct: 150 ELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGNT----YELQVADADGQNPQVALRS 205 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ ++ P +SP+ K+AY +++ V + T A + NF+ AP +S +G Sbjct: 206 REPVI-SPAWSPDGSKLAYVSFESGKP--VVYVHTLATSARIPVANFKGNNSAPAWSPDG 262 Query: 270 KRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + +++ +D IY V + RLT + I+ ++PD I+F SDR G Q+ Sbjct: 263 SKLAVALTRDGLSQIYIVGADGSSNMRRLTRSPGIDTEPIFTPDGRSIIFTSDRSGGPQI 322 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y +G D +R++ + + P SP G + + F I ++ E LL + Sbjct: 323 YQTSLDGGDARRLTFNGSYN-ISPRISPDGSTLLYVARRDGAFRIASLQLATGNETLLTD 381 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + QAP+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 382 GRDDQAPSFAPNGMQILYAAVQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 437 >gi|332096497|gb|EGJ01493.1| tol-Pal system beta propeller repeat protein TolB [Shigella dysenteriae 155-74] Length = 405 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 184/412 (44%), Gaps = 11/412 (2%) Query: 38 VATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI 97 + + + P+ + ++ + +V+ DL+ S FN + + Q+ + + Sbjct: 2 IDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV 61 Query: 98 PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIA 155 + W++LG +V G+V V ++L D + + + R Sbjct: 62 -QPGAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAG 120 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Q L Sbjct: 121 HTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLM 178 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G + + Sbjct: 179 SPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA 236 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + NG Sbjct: 237 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 296 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +RI+ + + D S G + +G + I ++L + P Sbjct: 297 GAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP 355 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 356 SLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 405 >gi|116688823|ref|YP_834446.1| translocation protein TolB [Burkholderia cenocepacia HI2424] gi|254246220|ref|ZP_04939541.1| TolB [Burkholderia cenocepacia PC184] gi|166229976|sp|A0K4X6|TOLB_BURCH RecName: Full=Protein tolB; Flags: Precursor gi|116646912|gb|ABK07553.1| TolB, N-terminal domain protein [Burkholderia cenocepacia HI2424] gi|124870996|gb|EAY62712.1| TolB [Burkholderia cenocepacia PC184] Length = 431 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 104/443 (23%), Positives = 188/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAGS----AANAQVNVLITGVGSTQFPIATANFTNEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNRDANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYVLYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|166712983|ref|ZP_02244190.1| translocation protein TolB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 439 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 111/414 (26%), Positives = 208/414 (50%), Gaps = 11/414 (2%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGG-KVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + SA+ +P+++ + VS VV DL RS F + +K T Sbjct: 29 IDIVGGSASATPIAVIPMPYQGSGTAPQTDVSAVVGADLDRSGQFRTLPAAQIVEKPTRG 88 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 + +FQ W +L +V GRV+ G+ RVE+ L+DV ++++G + + R + Sbjct: 89 TEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRVEYELFDVAKGERMLGLAMTARANAMRDV 147 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 +H ++D IY+ ITG +G F +RI +V+ S G ++ +L V D DG N + + S + L Sbjct: 148 SHQMADAIYEKITGVRGAFWTRIAYVTASGKGGAMRYALMVADSDGYNPQTIVRSAEP-L 206 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +K+AY +++ + +YL D A + + +FR + AP FS +G+R + Sbjct: 207 LSPNWSPDGKKLAYVSFERGNS-SIYLQDIATG-ARELVSSFRGINGAPSFSPDGRRLAL 264 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ + +IY +DL S +LTN I+ +++PD I F SDR G+ Q+Y + ++ Sbjct: 265 ALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQIYQVAAS 324 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNL 392 G R++ + V S G IA + SG + I ++ + L S Sbjct: 325 GGSANRVTFQGNYNATASV-SFDGKKIAVAQGSGNTYRIAMVDRSLGSPSWSTLSPGSLD 383 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 ++P+++P+ ++++ ++ G LY++ + R + L+ +P W + Sbjct: 384 ESPSFAPNASMVLYAAREGGRG--VLYAVSSDARVRQRLVLADGDVREPAWGPY 435 >gi|34495564|ref|NP_899779.1| translocation protein TolB [Chromobacterium violaceum ATCC 12472] gi|67461997|sp|Q7P1V3|TOLB_CHRVO RecName: Full=Protein tolB; Flags: Precursor gi|34101419|gb|AAQ57788.1| TolB protein precursor [Chromobacterium violaceum ATCC 12472] Length = 428 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 205/438 (46%), Gaps = 12/438 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + L +++ S A + + S +I+ F G ++ V+ Sbjct: 1 MPSLKTLLRGVLVAAMLVAGSARAELNIEIIGGGASRHAISVLPFKDEGPTQGNLTPVIR 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F LI + P I R+ W + GAQ L G+V G ++++ FRL Sbjct: 61 NDLALSGAFRLIDPSAVANVPFEPADI-RYPLWQAAGAQSLAIGKVESAGGGQIKISFRL 119 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 D RKQ+ G +F +P R++AH I+D IY++ITG+KG FN+R+ +V +S S Sbjct: 120 MDASQRKQLTGGEFTVTPDRSRQVAHAIADMIYEAITGQKGFFNTRLAYVLKSGRS---- 175 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L + D DG + + S + I+ P +SP+ + +AY ++ + + V++ D + Sbjct: 176 YALQISDVDGQRSQTILRSTEPII-SPSWSPDGRHIAYVSFASQKPV-VWVQDLATGQ-R 232 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + NF+ AP +S +G + + + IY ++ RL I+ ++S Sbjct: 233 RAVANFKGSNSAPAWSPDGSKLAVVLTTSGNSQIYIINAAGGPARRLMYNGGIDTEPAFS 292 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S + F SDR G Q+Y + NG + +R++ + + P SP G + + + S Sbjct: 293 PDGSMVYFVSDRSGNPQIYRVPVNGGNAQRVTWEGAYNV-SPKLSPDGKTLVYIRRSAGN 351 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-T 429 F + + R L + S + P+++P+GR +++S G S LY+ +G ++ Sbjct: 352 FRVMSQDLATNDSRQLSDGSYSERPSFAPNGRMVLYSSDAGGQ--SVLYAATADGSSKVK 409 Query: 430 LINTPAYASDPQWVGFMD 447 L DP W F + Sbjct: 410 LAVLNGDVQDPAWGPFNN 427 >gi|167580763|ref|ZP_02373637.1| translocation protein TolB [Burkholderia thailandensis TXDOH] Length = 433 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 192/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + + F W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNVDAGG---TPVPETASVDFGAWKAKGANAFVAGSVSREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 176 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV + RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSSGSGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAGGESAGAAQRVTFTGSYN-TSPRISPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G + Sbjct: 348 AYISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSAPPQILSVQGGAIREPSWGPFM 432 >gi|311103961|ref|YP_003976814.1| Tol-Pal system beta propeller repeat protein TolB [Achromobacter xylosoxidans A8] gi|310758650|gb|ADP14099.1| Tol-Pal system beta propeller repeat protein TolB [Achromobacter xylosoxidans A8] Length = 417 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 117/428 (27%), Positives = 201/428 (46%), Gaps = 15/428 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 +L L HA ++V + + +A F D G ++EV+ DL R+ F Sbjct: 1 MLTLACLMAIKPAHAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQF 60 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 LI+ N DS DW GA + G + + G R V +RL D + Q+ Sbjct: 61 RLINAAG---SGLNVDSPIAHDDWRGKGADFIAYGSITRGGDGRYDVRYRLADTVKKSQL 117 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G F + R++AH I+D IY+ ITG KG F++RI +V + + L V D D Sbjct: 118 DGVAFSGTEQELRRVAHQIADRIYEKITGVKGVFSTRIAYVLKKGAT----YELQVADAD 173 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + SR+ I+ P +SP+ K+AY +++ + VY+ + + NF+ Sbjct: 174 GQNPQVALRSREPII-SPSWSPDGSKLAYVSFESGKPV-VYVHNLATSARS-PVANFKGN 230 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDL-QSNATERLTNTLFINISASYSPDSSQIVF 318 AP +S +G + +++ +D IY V + R+T + I+ S++PD + I+F Sbjct: 231 NSAPGWSPDGSKLAVALTRDGLSQIYIVGATDGSNPTRVTRSPGIDTEPSFTPDGASIIF 290 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G Q+Y S+G + +R++ + + P SP G + + F I + Sbjct: 291 TSDRSGGPQIYQTGSSGGEARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNL 349 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYA 437 E LL + + Q+P+++P+G ++++ ++G S L + +GR +TL Sbjct: 350 SSGSETLLTDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEI 407 Query: 438 SDPQWVGF 445 +P W F Sbjct: 408 REPTWGPF 415 >gi|149185617|ref|ZP_01863933.1| translocation protein TolB precursor [Erythrobacter sp. SD-21] gi|148830837|gb|EDL49272.1| translocation protein TolB precursor [Erythrobacter sp. SD-21] Length = 460 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 146/417 (35%), Positives = 217/417 (52%), Gaps = 18/417 (4%) Query: 42 SANYSPVSIAFTKFV------------SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 N + IA F + LG +++ V++ +L+ + +F DS + Sbjct: 49 EGNLDDLGIAIPAFATDRNVATPANASGTEALGLEMARVITANLRNNGLFKPAGPDSLPR 108 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + P + W+ GA++LV G V DRL V L+D+ +++++ + + SPA Sbjct: 109 PEFANITSPVWGTWSVRGAEMLVHGYVRARSDDRLTVGCYLYDMALQQRLVAEGWVVSPA 168 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR+ AH SD IY +TGE F+SRI +++E+ L +MD DGAN R++T Sbjct: 169 DWRRAAHKCSDLIYSRLTGESPFFDSRIAYIAETGPKDNRVKRLAIMDSDGANHRFITTG 228 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R PR+SP+ +++ Y +Y D + R+Y+ D + + APR+S +G Sbjct: 229 RS-TALTPRYSPDYKRLVYLSYVDGNP-RIYVYDIGTGSQT-LVTQSDNPTFAPRWSPDG 285 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + L S+ DIY V Q +ERLT+T I+I SYSPD +IVFESDR G +Q Y Sbjct: 286 RWILYSMAVGGNTDIYRVSAQGGRSERLTDTPGIDIGGSYSPDGRRIVFESDRSGAQQCY 345 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 VM ++GS+Q+RIS P WSP+GD IAFT S F I VM G R L Sbjct: 346 VMDADGSNQRRISFGGSR-CATPEWSPRGDQIAFTNAS--SFNISVMSPSGGNVRTLTRG 402 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +APTW+P+GR + F R + + L+ +DL G NE + TP ASDP W + Sbjct: 403 WQDEAPTWAPNGRIIQFFRTERNSGKTSLWQVDLTGENERSLPTPVDASDPAWGPIL 459 >gi|171058627|ref|YP_001790976.1| translocation protein TolB [Leptothrix cholodnii SP-6] gi|170776072|gb|ACB34211.1| Tol-Pal system beta propeller repeat protein TolB [Leptothrix cholodnii SP-6] Length = 427 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 114/419 (27%), Positives = 205/419 (48%), Gaps = 15/419 (3%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 T+ A +V + + V IA + D+ VS +V DL+RS +F + + Sbjct: 20 ATASRAQFRVEISGVGATQVPIAVLRLRDEDKAPQPVSAIVRADLERSGLFRSVEPGNV- 78 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + S P F DW SLG+ LV G V + R V +RLWDV ++ + + Sbjct: 79 --AHDETSRPVFSDWRSLGSDALVAGSVTRLADARFDVRYRLWDVVKGSELAAQALSVAK 136 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 R AH I+DD+YQ +TGE+G F++RI +VS + +L V D DG N + Sbjct: 137 DDLRLAAHRIADDVYQKLTGERGVFSTRIAYVS----KAANRYTLWVADADGENAQAAVG 192 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + I+ P +SPN +++AY +++ + VY+ D + + I N++ AP +S + Sbjct: 193 GPEPII-SPAWSPNGRELAYVSFEARKAV-VYVQDVLTSK-RRVIANYKGSNSAPAWSPD 249 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + ++++ +D +Y++ RLT + I+ A++SPD + F SDR G Q+ Sbjct: 250 GNQLVVTLTRDGLSQLYTMSRTGGDLRRLTTSSGIDTEAAWSPDGKSVYFVSDRGGGPQI 309 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLV 387 Y + + G + +R++ + P SP G +A+ +G F + +M+ L Sbjct: 310 YRVAAGGGNAERVTFAGNYN-ISPALSPDGRYMAYVSRLNGSAFRLTLMELATGTITTLT 368 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 + ++ ++P ++P+ R +I++ + G L + L+G + + P A +P W F Sbjct: 369 DTNDDESPGFAPNSRLIIYATRAGGR--DVLMTTTLDGSIKARLGAPQADVREPTWGPF 425 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 7/139 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 + FVS+ + + G N +T + + P SP+ + +AY + + Sbjct: 296 SVYFVSDRGGGP----QIYRVAAGGGNAERVTFAGN-YNISPALSPDGRYMAYVSRLNGS 350 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 R+ LM+ + +P F+ N + + + + + + L + Sbjct: 351 AFRLTLMELATGTITT--LTDTNDDESPGFAPNSRLIIYATRAGGRDVLMTTTLDGSIKA 408 Query: 296 RLTNTLFINISASYSPDSS 314 RL ++ P Sbjct: 409 RLGAPQADVREPTWGPFGR 427 >gi|291612990|ref|YP_003523147.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans lithotrophicus ES-1] gi|291583102|gb|ADE10760.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans lithotrophicus ES-1] Length = 419 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 111/430 (25%), Positives = 194/430 (45%), Gaps = 17/430 (3%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS-IDELGGKVSEVVSKDLQRSD 77 L V++ S A + + A V I+ F ++ G +S VVS DL R+ Sbjct: 3 FLGVIVLLCVACSARAELSIEITGAGEHQVPISLVPFAGDENQGGQSISTVVSNDLLRTG 62 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F L+ K + + +W G L+ G+V RL V FRL D+ R Sbjct: 63 LFKLVDPAG---KAPHEPGEVNYVEW--PGVDALLIGKVRNLDGGRLEVRFRLLDMVRRT 117 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 ++IG + R IAH +SD IY+ +TG+ G F++RI +V+ K L V D Sbjct: 118 ELIGLAVTAKSEQLRAIAHRVSDLIYEKLTGDPGVFSTRIAYVNRDG----KKYRLVVAD 173 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + L + I P +SP+ ++AY +++ + + R + +F Sbjct: 174 SDGYGEQTLLALNEPI-MSPAWSPDGSQLAYVSFERGHAS--VFVQSLATRKRTVLADFP 230 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP +S +GK+ + + +D +Y V R+T + I+ ++PD ++ Sbjct: 231 GSNSAPAWSPDGKQLALVLSRDGYSQLYLVRNDGKDLHRITFSETIDTEPVFTPDGKSLL 290 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F SDR G Q+Y + G +R++ D + F P SP G F+ F F I V Sbjct: 291 FTSDRGGSAQIYRVPVEGGSAERLTFDG-TNNFSPRPSPDGKSFVFSHFVDGVFYIAVQD 349 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 + +Q ++L + P+++P+G+ ++F+ + G L ++ +GR + +I Sbjct: 350 FETNQMQVLTGGGWEKKPSFAPNGKLILFATESQGRGI--LATVSSDGRVKQKMIAQRGD 407 Query: 437 ASDPQWVGFM 446 +P W F+ Sbjct: 408 IREPIWGPFL 417 >gi|124385902|ref|YP_001028613.1| translocation protein TolB [Burkholderia mallei NCTC 10229] gi|254207691|ref|ZP_04914041.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei JHU] gi|147751585|gb|EDK58652.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei JHU] Length = 431 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 116/445 (26%), Positives = 194/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 1 MMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 57 SVVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKV 113 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 114 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 173 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 227 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 228 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 286 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 287 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLL 345 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++R+ G + Sbjct: 346 AYISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPS 405 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 406 DGSAPPQILSVQGGAIREPSWGPFM 430 >gi|119504264|ref|ZP_01626344.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2080] gi|119459772|gb|EAW40867.1| translocation protein TolB precursor [marine gamma proteobacterium HTCC2080] Length = 431 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 104/434 (23%), Positives = 196/434 (45%), Gaps = 9/434 (2%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDL 73 NL +L+L A +++ +P IA F V+ ++ DL Sbjct: 3 NLLRVLILSLCVATFPALAQLQIEITRGVDNPTPIAVVPFGWSGSGASPEDVARIIDSDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F+ +S+ + + F+DW ++ + ++ GR L++ ++L+D Sbjct: 63 ARSGQFSPVSRRDMLSYPSRGSEL-YFRDWRAINSDYVLIGRYELAAAGNLKLSWQLFDS 121 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNS 192 + + + R +AH I+D++Y+ +TG G F +R+L+VS +G Sbjct: 122 TRELSVEEGVVMGAASEVRMLAHKIADEVYEKLTGIPGAFATRLLYVSVTRNPAGKDFYR 181 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D DGA L SR+ I P +SPN +VAY +++ +Y + R A ++ Sbjct: 182 LTLADSDGARPIVLLESREPI-LGPSWSPNGDEVAYVSFETSRPA-IYRQNLRTG-AREQ 238 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + NF+ + +P FS +G + + KD + DIY ++L S RLT I+ ++ PD Sbjct: 239 LTNFKGLNNSPVFSPDGNSMAMVLSKDGSPDIYLMNLASKRLTRLTKHYAIDTEPTWMPD 298 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++F SDR G+ Q+Y + R++ D + V + G +A + Sbjct: 299 GQSLLFTSDRGGRPQIYRYDLKSGNTTRVTFDGRYNARARV-AQDGRNVALVHQQNGAYH 357 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 I V + +L S ++PT +P+G ++++ K++G + ++D G + L Sbjct: 358 IAVFDLVTERLTVLTTTSLDESPTIAPNGSIVLYATKRNGQSILGAVAVDG-GVSFNLPA 416 Query: 433 TPAYASDPQWVGFM 446 +P W ++ Sbjct: 417 RDGEVQEPSWSPYL 430 >gi|182681495|ref|YP_001829655.1| translocation protein TolB [Xylella fastidiosa M23] gi|182631605|gb|ACB92381.1| Tol-Pal system beta propeller repeat protein TolB [Xylella fastidiosa M23] Length = 474 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 217/453 (47%), Gaps = 16/453 (3%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKF--- 55 S+ F +L+M L +L+G FP S + + N + IA Sbjct: 25 SIIFLKVIDLHMTKFPRWLAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYH 84 Query: 56 VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 S VS VV+ DL RS F + ++ T+ I RF W +L +V GR Sbjct: 85 DSAGAPATDVSGVVAADLNRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGR 143 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V+ + RVE+ L+DV++ K+++G + ++ R +AH ++D IY+ ITG +G F + Sbjct: 144 VLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFT 203 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +V+ S G ++ +L V D DG N + + S + L P +S + +K+AY +++ + Sbjct: 204 RIAYVTASGSHGAMRYALMVADSDGYNPQTIVRSAEP-LLSPDWSSDGKKLAYVSFE-KG 261 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + + +FR + AP F+ +G R +S+ + +IY +DL S Sbjct: 262 GSSIYIQDIATGS-RELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLI 320 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +LTN+ I+ +S D I F SDR G+ Q+Y + S G R++ + V S Sbjct: 321 QLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQIYKVASVGGAATRVTFQGNYNASASV-S 379 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 I + SG + I +M + L S ++P+++P+ ++++ ++ G Sbjct: 380 YDDKKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR 439 Query: 414 TGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 LY++ + R + L++ + +P W + Sbjct: 440 G--VLYAVSADARVRQRLVSVDSDVREPAWGPY 470 >gi|83720845|ref|YP_441919.1| translocation protein TolB [Burkholderia thailandensis E264] gi|83654670|gb|ABC38733.1| tolB protein [Burkholderia thailandensis E264] Length = 463 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 192/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 33 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 88 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + + F W + GA V G V +E + +V Sbjct: 89 SIVRADLARSGKFTNVDAGG---TPVPETASVDFGAWKAKGANAFVAGSVSREPNGQYKV 145 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 146 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 205 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 206 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 259 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV + RLT + I+ Sbjct: 260 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGSGLHRLTRSSSID 318 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 319 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAGGESAGAAQRVTFTGSYN-TSPRISPDGKLL 377 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G + Sbjct: 378 AYISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPS 437 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 438 DGSAPPQILSVQGGAIREPSWGPFM 462 >gi|121600577|ref|YP_992167.1| translocation protein TolB [Burkholderia mallei SAVP1] gi|121229387|gb|ABM51905.1| tolB protein [Burkholderia mallei SAVP1] Length = 463 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 116/445 (26%), Positives = 194/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 33 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 88 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 89 SVVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKV 145 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 146 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 205 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 206 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 259 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 260 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 318 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 319 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLL 377 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++R+ G + Sbjct: 378 AYISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPS 437 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 438 DGSAPPQILSVQGGAIREPSWGPFM 462 >gi|78065363|ref|YP_368132.1| translocation protein TolB [Burkholderia sp. 383] gi|119371038|sp|Q39J78|TOLB_BURS3 RecName: Full=Protein tolB; Flags: Precursor gi|77966108|gb|ABB07488.1| Periplasmic component of the Tol biopolymer transport system [Burkholderia sp. 383] Length = 431 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 106/443 (23%), Positives = 188/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAGS----AANAQVNVLITGVGSTQFPIATANFANEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPESASVDLGAWKAKGANAFVAGSVNREANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPSWSPSGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-IVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNSTGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGHWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRISPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ L+++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQSGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|293603404|ref|ZP_06685831.1| TolB protein [Achromobacter piechaudii ATCC 43553] gi|292818177|gb|EFF77231.1| TolB protein [Achromobacter piechaudii ATCC 43553] Length = 416 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 114/427 (26%), Positives = 198/427 (46%), Gaps = 15/427 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 ++ + HA ++V + + +A F D G ++EV+ DL R+ F Sbjct: 1 MLALCLMAAKPAHAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQFR 60 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 LI+ N DS DW GA L G + + R V +RL D + Q+ Sbjct: 61 LINAAG---SGLNVDSPIAHDDWRGKGADFLAYGSITRGADGRYDVRYRLADTVKKGQLD 117 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G F + R++AH I+D IY+ ITG +G F++RI +V + + L V D DG Sbjct: 118 GVAFSGTEQELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKKGAT----YELQVADADG 173 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N + SR+ I+ P +SP+ K+AY +++ V + T A + NF+ Sbjct: 174 QNPQVALRSREPII-SPSWSPDGAKLAYVSFESGKP--VVYVHTLATSARVPVANFKGNN 230 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDL-QSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G + +++ +D IY V + R+T + I+ +++PD + I+F Sbjct: 231 SAPAWSPDGSKLAVALTRDGLSQIYIVGASDGSNPTRVTRSPGIDTEPTFTPDGASIIFT 290 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G Q+Y S G + +R++ + + P SP G + + F I + Sbjct: 291 SDRSGGPQIYQTGSTGGEARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLS 349 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 E LL + + Q+P+++P+G ++++ ++G S L + +GR +TL Sbjct: 350 SGSESLLTDGRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIR 407 Query: 439 DPQWVGF 445 +P W F Sbjct: 408 EPTWGPF 414 >gi|167618866|ref|ZP_02387497.1| translocation protein TolB [Burkholderia thailandensis Bt4] gi|257138090|ref|ZP_05586352.1| translocation protein TolB [Burkholderia thailandensis E264] gi|118574574|sp|Q2SYT0|TOLB_BURTA RecName: Full=Protein tolB; Flags: Precursor Length = 433 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 192/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F + + F W + GA V G V +E + +V Sbjct: 59 SIVRADLARSGKFTNVDAGG---TPVPETASVDFGAWKAKGANAFVAGSVSREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 176 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV + RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGSGLHRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAGGESAGAAQRVTFTGSYN-TSPRISPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G + Sbjct: 348 AYISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSAPPQILSVQGGAIREPSWGPFM 432 >gi|187927780|ref|YP_001898267.1| translocation protein TolB [Ralstonia pickettii 12J] gi|187724670|gb|ACD25835.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia pickettii 12J] Length = 434 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 114/419 (27%), Positives = 191/419 (45%), Gaps = 18/419 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 HA + V + S IA F + +S +V DL RS F+ + + Sbjct: 29 AHAQLNVEISGVGASQYPIAIANFQGEAQAPQNLSAIVRADLVRSGRFSNVDVAGA---V 85 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 P W + GA V G V + G DR + FRL+D + + G P Sbjct: 86 VPESPAPDLGAWKAKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESLGGLSLTRGPGQL 144 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH I+D IYQ + GE+G F +R+ +VS+ + L + D DGAN + S + Sbjct: 145 RLAAHEIADYIYQKLIGERGVFATRLSYVSKVG----RRFQLQISDSDGANPQIALTSNE 200 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I+ P +SP+ KVAY +++ + + VY+ D R I N + AP +S +G+ Sbjct: 201 PII-SPAWSPDGTKVAYVSFESKKPV-VYVHDLVAGR-RTVISNQKGNNSAPAWSPDGRH 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +S+ +D +Y V+ + RL+ + I+ S+SPD I F SDR G Q+Y M Sbjct: 258 VAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRM 317 Query: 332 QSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +G +R++ + P SP G L+A+ G F + L + Sbjct: 318 SVDGEEAGGAQRVTFKGNYN-TSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTD 376 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVGFM 446 SN ++P+++ +G+ ++++ + G S L ++ +GR +++ +P W FM Sbjct: 377 TSNDESPSFAANGKFILYATRVGGK--SVLAAVSTDGRTRQVLSLQAGEVREPAWGPFM 433 >gi|53725631|ref|YP_103660.1| translocation protein TolB [Burkholderia mallei ATCC 23344] gi|166998276|ref|ZP_02264136.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei PRL-20] gi|262193278|ref|YP_001081486.2| translocation protein TolB [Burkholderia mallei NCTC 10247] gi|67461934|sp|Q62I10|TOLB_BURMA RecName: Full=Protein tolB; Flags: Precursor gi|52429054|gb|AAU49647.1| tolB protein [Burkholderia mallei ATCC 23344] gi|243065356|gb|EES47542.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei PRL-20] gi|261826004|gb|ABN03191.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei NCTC 10229] gi|261835072|gb|ABO06119.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei NCTC 10247] Length = 433 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 116/445 (26%), Positives = 194/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 59 SVVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 176 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++R+ G + Sbjct: 348 AYISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSAPPQILSVQGGAIREPSWGPFM 432 >gi|71901735|ref|ZP_00683807.1| TolB, N-terminal [Xylella fastidiosa Ann-1] gi|71728507|gb|EAO30666.1| TolB, N-terminal [Xylella fastidiosa Ann-1] Length = 474 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 217/453 (47%), Gaps = 16/453 (3%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKF--- 55 S+ F +L+M L +L+G FP S + + N + IA Sbjct: 25 SIIFLKVIDLHMTKFPRWLAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYH 84 Query: 56 VSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGR 115 S VS VV+ DL RS F + ++ T+ I RF W +L +V GR Sbjct: 85 DSAGAPATDVSGVVAADLNRSGQFRTLPLGQITERPTHGSEI-RFPIWQALKQDYIVVGR 143 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V+ + RVE+ L+DV++ K+++G + ++ R +AH ++D IY+ ITG +G F + Sbjct: 144 VLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFT 203 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +V+ S ++ +L V D DG N + + S + L P +SP+ +K+AY +++ + Sbjct: 204 RIAYVTASGSHRAMRYALMVADSDGYNPQTIVRSAEP-LLSPDWSPDGKKLAYVSFE-KG 261 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + + +FR + AP F+ +G R +S+ + +IY +DL S Sbjct: 262 GSSIYIQDIATGS-RELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLI 320 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +LTN+ I+ +S D I F SDR G+ Q+Y + S G R++ + V S Sbjct: 321 QLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQIYKVASVGGAATRVTFQGNYNASASV-S 379 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 I + SG + I +M + L S ++P+++P+ ++++ ++ G Sbjct: 380 YDDKKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGR 439 Query: 414 TGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 LY++ + R + L++ + +P W + Sbjct: 440 G--VLYAVSADARVRQRLVSVDSDVREPAWGPY 470 >gi|76811659|ref|YP_334628.1| translocation protein TolB [Burkholderia pseudomallei 1710b] gi|242315897|ref|ZP_04814913.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 1106b] gi|76581112|gb|ABA50587.1| tolB protein [Burkholderia pseudomallei 1710b] gi|242139136|gb|EES25538.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 1106b] Length = 463 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 193/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 33 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 88 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 89 SVVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKV 145 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 146 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 205 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 206 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 259 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 260 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 318 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 319 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLL 377 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G + Sbjct: 378 AYISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPS 437 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 438 DGSAPPQILSVQGGAIREPSWGPFM 462 >gi|107021875|ref|YP_620202.1| translocation protein TolB [Burkholderia cenocepacia AU 1054] gi|118574572|sp|Q1BYS6|TOLB_BURCA RecName: Full=Protein tolB; Flags: Precursor gi|105892064|gb|ABF75229.1| TolB-like protein [Burkholderia cenocepacia AU 1054] Length = 431 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 104/443 (23%), Positives = 188/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLITAGS----AANAQVNVLITGVGSTQFPIATANFTNEANLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNRDANGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 116 NFILYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNARIALSSTEPII-SPAWSPSSTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + + ++P+++ +G+ ++++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYVLYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|53720374|ref|YP_109360.1| translocation protein TolB [Burkholderia pseudomallei K96243] gi|167720990|ref|ZP_02404226.1| translocation protein TolB [Burkholderia pseudomallei DM98] gi|167739947|ref|ZP_02412721.1| translocation protein TolB [Burkholderia pseudomallei 14] gi|167817184|ref|ZP_02448864.1| translocation protein TolB [Burkholderia pseudomallei 91] gi|167825597|ref|ZP_02457068.1| translocation protein TolB [Burkholderia pseudomallei 9] gi|167847081|ref|ZP_02472589.1| translocation protein TolB [Burkholderia pseudomallei B7210] gi|167895665|ref|ZP_02483067.1| translocation protein TolB [Burkholderia pseudomallei 7894] gi|167904058|ref|ZP_02491263.1| translocation protein TolB [Burkholderia pseudomallei NCTC 13177] gi|167912315|ref|ZP_02499406.1| translocation protein TolB [Burkholderia pseudomallei 112] gi|167920272|ref|ZP_02507363.1| translocation protein TolB [Burkholderia pseudomallei BCC215] gi|254194869|ref|ZP_04901299.1| putative TolB protein [Burkholderia pseudomallei S13] gi|67461935|sp|Q63RA8|TOLB_BURPS RecName: Full=Protein tolB; Flags: Precursor gi|118574573|sp|Q3JP75|TOLB_BURP1 RecName: Full=Protein tolB; Flags: Precursor gi|52210788|emb|CAH36772.1| putative periplasmic TolB protein [Burkholderia pseudomallei K96243] gi|169651618|gb|EDS84311.1| putative TolB protein [Burkholderia pseudomallei S13] Length = 433 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 193/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 59 SVVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 176 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G + Sbjct: 348 AYISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSAPPQILSVQGGAIREPSWGPFM 432 >gi|167563919|ref|ZP_02356835.1| translocation protein TolB [Burkholderia oklahomensis EO147] gi|167571054|ref|ZP_02363928.1| translocation protein TolB [Burkholderia oklahomensis C6786] Length = 433 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 193/445 (43%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 59 SVVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVSREPNGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 116 NFILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L + D DG N S++ I+ P +SP+ KVAY +++ + + VY+ D Sbjct: 176 N----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELKKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLSVALSLTGNTQIYSVSSTGTGLRRLTRSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRISPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + + ++P+++ +G+ ++++ + G Sbjct: 348 AYISRTGGGFKLYVQDLQTGAANAVTNTTRDESPSFAANGQYILYATQSGGRGVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSAPPQILSVQGGAIREPSWGPFM 432 >gi|294013406|ref|YP_003546866.1| TolB protein [Sphingobium japonicum UT26S] gi|292676736|dbj|BAI98254.1| TolB protein [Sphingobium japonicum UT26S] Length = 417 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 151/421 (35%), Positives = 219/421 (52%), Gaps = 19/421 (4%) Query: 38 VATNSANYSPVSIAFT----------KFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 V S + I S ELG K++EV++ DL+ S +F+ + Sbjct: 3 VDVTGDIDSSLKIVVPALPAQAEVSTPAGSSTELGRKIAEVIASDLKGSGLFDPSGPNGI 62 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR-LRVEFRLWDVKDRKQIIGKKFFS 146 + P + W + Q LV G V G + + V L+DV ++++ + + Sbjct: 63 PTIAFPEVTSPAYDKWGAY--QALVQGFVRTTGGEADITVGCYLYDVALKQELTRQGYVV 120 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 SP WR+ AH +D IY ++GE F+SRI +++ES G L +MD DGAN R++ Sbjct: 121 SPRDWRRAAHKCADAIYARLSGESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFI 180 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T + I PRFSP+ + + Y +Y + +R+Y+ D + + + + APR+S Sbjct: 181 TNGQS-IALTPRFSPDYKSIVYVSY-LNNRVRIYVYDIGTGKQ-RLVTESSNATFAPRWS 237 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+ L S+ DIY V A +RLT I++ SYSPD QIVFESDR G + Sbjct: 238 PDGRSILFSMAIAGNTDIYRVSATGGAPQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQ 297 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+YVM ++GS Q+RIS Y P WSP+GDLIAFTK SG+ F I VM G ER+L Sbjct: 298 QIYVMNADGSGQRRISHGG-GRYATPEWSPRGDLIAFTKISGD-FKIAVMTPSGDNERIL 355 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + P+WSP+GR L F R G G S+++ +DL G NE I TP SDP W Sbjct: 356 TNGWQDEQPSWSPNGRVLQFFRTTPGREGSSQVWQVDLTGVNERRIPTPLSGSDPAWGPL 415 Query: 446 M 446 + Sbjct: 416 L 416 >gi|254283986|ref|ZP_04958954.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR51-B] gi|219680189|gb|EED36538.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR51-B] Length = 435 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 104/437 (23%), Positives = 196/437 (44%), Gaps = 10/437 (2%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVSK 71 + + L+ A +++ N +P IA F + V+ ++ Sbjct: 1 MRRFAVFVGLLALVLSAGASAQLQIEINQGVDNPTPIAVVPFGWQGVGTAPDDVARIIDS 60 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI--KEGKDRLRVEFR 129 DL RS F +S+ I F+DW +L ++ ++ GRV + G +R+E++ Sbjct: 61 DLARSGQFAPVSRRDMLSFPDRASDI-YFRDWRALSSEYVLIGRVSGARSGDGPVRIEYQ 119 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGI 188 L+D + +I S R +AH I+D +Y+ +TG G F +R+L+VS + +G Sbjct: 120 LFDAIRQLEIDSGTVSGSVQEIRMLAHQIADAVYERLTGIPGAFATRLLYVSVTRNPNGK 179 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L + D DGA L RD I P +SP+ +VAY +++ +Y + R Sbjct: 180 DFYRLVLSDADGARPIVLFEGRDPI-MAPSWSPDGSEVAYVSFETSRPA-IYRQNLRTG- 236 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +++ NF+ + +P +S +G + + KD + DIY ++L S RLT I+ + Sbjct: 237 VREQLTNFKGLNNSPVWSPDGNSMAMVLSKDGSPDIYLMNLASKKLRRLTRHYAIDTEPT 296 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PD ++F SDR G+ Q+Y + R++ + + V + G +A Sbjct: 297 WMPDGRSLLFTSDRGGRPQIYRYDLSSGQITRVTFEGSYNARARV-AQDGRNVALVHQQN 355 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 ++ I V S+ +L S ++P+ +P+G ++++ K+D ++D R Sbjct: 356 GQYHIAVHDLVTSRLTILTSTSLDESPSIAPNGSIVLYATKRDDKGILGAVAVDGGVRFS 415 Query: 429 TLINTPAYASDPQWVGF 445 + +P W + Sbjct: 416 LPARDGGHVQEPAWSPY 432 >gi|238561025|ref|ZP_00442669.2| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei GB8 horse 4] gi|254175452|ref|ZP_04882112.1| tolB protein [Burkholderia mallei ATCC 10399] gi|254202357|ref|ZP_04908720.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei FMH] gi|254356407|ref|ZP_04972683.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei 2002721280] gi|147746604|gb|EDK53681.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei FMH] gi|148025404|gb|EDK83558.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei 2002721280] gi|160696496|gb|EDP86466.1| tolB protein [Burkholderia mallei ATCC 10399] gi|238525395|gb|EEP88823.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia mallei GB8 horse 4] Length = 430 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 116/444 (26%), Positives = 193/444 (43%), Gaps = 20/444 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 1 MTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTS 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 57 VVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKVN 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 114 FILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTGN 173 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 ----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLP 227 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 228 TGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDT 286 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A Sbjct: 287 EPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLLA 345 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++R+ G + D Sbjct: 346 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYARQSGGRSVLAAVPSD 405 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 406 GSAPPQILSVQGGAIREPSWGPFM 429 >gi|325923403|ref|ZP_08185068.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas gardneri ATCC 19865] gi|325546118|gb|EGD17307.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas gardneri ATCC 19865] Length = 439 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 110/422 (26%), Positives = 209/422 (49%), Gaps = 11/422 (2%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG-KVSEVVSKDLQRSDVFNLISQDS 86 F + + SA+ +P+++ + V+ VV DL RS F + Sbjct: 21 FAQQQGLTIDIVGGSASATPIAVIPMAYQGSGTAPQTDVAAVVGADLDRSGQFRTLPAAQ 80 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 +K T + +FQ W +L +V GRV+ G+ RVE+ L+DV ++++G + Sbjct: 81 IVEKPTRGTEV-QFQTWRTLKQNYIVVGRVMDAGEGAYRVEYELFDVAKGERLLGLAMTA 139 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 + R ++H ++D IY+ ITG +G F +RI +V+ S G ++ +L V D DG N + + Sbjct: 140 RANAMRDVSHQMADAIYEKITGVRGAFWTRIAYVTASGSGGSMRFALMVADSDGYNPQTI 199 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S + L P +SP+ +K+AY +++ + +YL D A + + +FR + AP FS Sbjct: 200 VRSAEP-LLSPNWSPDGKKLAYVSFERGNS-SIYLQDISTG-ARELVSSFRGINGAPSFS 256 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+R +++ + +IY +DL S +LTN I+ +++PD I F SDR G+ Sbjct: 257 PDGRRLALALSRSGNPEIYVMDLGSKQLTQLTNHFGIDTEPTWAPDGGSIYFTSDRGGRP 316 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--R 384 Q+Y + ++G R++ + V S G +A + SG + I +M + Sbjct: 317 QIYQVAASGGSANRVTFQGNYNATASV-SFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWS 375 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWV 443 + S ++P+++P+ ++++ ++ G LY++ + R + L+ +P W Sbjct: 376 TISPGSLDESPSFAPNASMILYAAREGGRG--VLYAVSSDARVRQRLVLADGDVREPAWG 433 Query: 444 GF 445 + Sbjct: 434 PY 435 >gi|32699720|sp|Q9PC84|TOLB_XYLFA RecName: Full=Protein tolB; Flags: Precursor Length = 439 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 115/437 (26%), Positives = 213/437 (48%), Gaps = 13/437 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG---KVSEVVSK 71 L +L+ L+ + + + N + IA D +G VS VV+ Sbjct: 6 RWLAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAA 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + ++ T+ I RF W +L +V GRV+ + RVE+ L+ Sbjct: 66 DLNRSGQFRTLPLGQIIERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELF 124 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV++ K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ Sbjct: 125 DVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRY 184 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L V D DG N + + S + L P +SP+ +K+AY +++ + +Y+ D + Sbjct: 185 ALMVADSDGYNPQTIVRSAEP-LLSPDWSPDGKKLAYVSFE-KGGSSIYIQDIATGS-RE 241 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ ++S Sbjct: 242 LVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSS 301 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F SDR G+ Q+Y + S G R++ + V S I + SG + Sbjct: 302 DGKFIYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATTSV-SYDDKKIVVAQGSGNVY 360 Query: 372 AIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 I +M + L S ++P+++P+ ++++ ++ G LY++ + R + Sbjct: 361 RIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADARVRQ 418 Query: 429 TLINTPAYASDPQWVGF 445 L++ + +P W + Sbjct: 419 RLVSVDSDVREPAWGPY 435 >gi|296283271|ref|ZP_06861269.1| translocation protein TolB [Citromicrobium bathyomarinum JL354] Length = 467 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 137/419 (32%), Positives = 212/419 (50%), Gaps = 15/419 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 A + +AN LG +++ V++ DLQ + +F D+ Sbjct: 63 LAIPAFAAERDVATAANA----------QGTAALGAELARVITADLQNNGLFAPTGPDAL 112 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 + + P + W GA++LV G V +L V L+DV ++ + Sbjct: 113 PKPNYPQITDPVWNMWRMRGAEMLVQGYVRPRADGKLVVGCYLYDVALNDELARSGWVVP 172 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 P+ WR+ AH +D +Y +TGE F+SRI +++E+ L +MD DGAN R++T Sbjct: 173 PSDWRRAAHKCADLVYSRLTGESPFFDSRIAYIAETGPKDNRTKRLAIMDSDGANHRFIT 232 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 R PR+SP+ +K+ Y +Y D + R+Y+ D + + + APR+S Sbjct: 233 TGR-ATALTPRYSPDYRKLMYLSYVDGNP-RIYIYDIGTGKQT-LVTESSNPTFAPRWSP 289 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +G+ L S+ + DIY V A+ERLT+ I++ SYSPD ++IVFESDR G +Q Sbjct: 290 DGRWVLYSMAVNGNTDIYRVSANGGASERLTDAPGIDVGGSYSPDGTRIVFESDRSGAQQ 349 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y+M ++GS+Q+RI+ P WSP+GD IAFT + F I M DG R L Sbjct: 350 IYMMNADGSNQRRITFFG-GRAATPEWSPRGDQIAFT-YIPGDFNIATMSPDGKNFRKLT 407 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + +APTW+P+GR L F R + + +Y +DL G N + TP ASDP W + Sbjct: 408 DGWQDEAPTWAPNGRILQFFRTERNTGRTAIYQVDLTGENLRRLPTPVDASDPAWGPIL 466 >gi|126440889|ref|YP_001060215.1| translocation protein TolB [Burkholderia pseudomallei 668] gi|126451941|ref|YP_001067479.1| translocation protein TolB [Burkholderia pseudomallei 1106a] gi|134280578|ref|ZP_01767289.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 305] gi|217420955|ref|ZP_03452460.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 576] gi|237813605|ref|YP_002898056.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei MSHR346] gi|254191662|ref|ZP_04898165.1| putative TolB protein [Burkholderia pseudomallei Pasteur 52237] gi|254258828|ref|ZP_04949882.1| putative TolB protein [Burkholderia pseudomallei 1710a] gi|254299065|ref|ZP_04966515.1| putative TolB protein [Burkholderia pseudomallei 406e] gi|126220382|gb|ABN83888.1| putative TolB protein [Burkholderia pseudomallei 668] gi|126225583|gb|ABN89123.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 1106a] gi|134248585|gb|EBA48668.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 305] gi|157809130|gb|EDO86300.1| putative TolB protein [Burkholderia pseudomallei 406e] gi|157939333|gb|EDO95003.1| putative TolB protein [Burkholderia pseudomallei Pasteur 52237] gi|217396367|gb|EEC36384.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei 576] gi|237506221|gb|ACQ98539.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei MSHR346] gi|254217517|gb|EET06901.1| putative TolB protein [Burkholderia pseudomallei 1710a] Length = 430 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 115/444 (25%), Positives = 192/444 (43%), Gaps = 20/444 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +L + + L+ GG + HA V V + IA FV+ L +V+ Sbjct: 1 MTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTS 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 57 VVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKVN 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 114 FILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTGN 173 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 ----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLP 227 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 228 TGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDT 286 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A Sbjct: 287 EPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLLA 345 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 346 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 405 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 406 GSAPPQILSVQGGAIREPSWGPFM 429 >gi|329113830|ref|ZP_08242601.1| Protein TolB [Acetobacter pomorum DM001] gi|326696840|gb|EGE48510.1| Protein TolB [Acetobacter pomorum DM001] Length = 454 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 155/443 (34%), Positives = 243/443 (54%), Gaps = 19/443 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 L + ++ + G F + ++ + A +P+ I F LG K++E Sbjct: 24 RSLLGASVAAGGIMAMPVGAFAAASAPEAEITVDQARTAPIPIIIPNFGGG--LGEKIAE 81 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL + +F ++ P F S+GA + G +RVE Sbjct: 82 VLTNDLNNTGLFKVMPGS-------TTSGTPDFATSKSMGAHAQ-VTGSVSGGGSSVRVE 133 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RLWDV +QI G + +S A+WR+IAH + D IYQ + GEKG F++RI F+S S G Sbjct: 134 MRLWDVLSHQQIQGTAYTTSAANWRRIAHIVGDVIYQRMLGEKGYFDTRIAFISRSGPRG 193 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L VMD+DGAN R LT + + PRFSP + ++A+ +Y + RVYL D Sbjct: 194 HQRTRLAVMDQDGANARMLTTGK-WLTLTPRFSPVKDQIAFMSYANNRP-RVYLFDLTSG 251 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R + +G F + APRFS +G+ ++SV ++ D+Y VDL S + ++T++ I+ S Sbjct: 252 RQ-QILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYVVDLASGSRRQITSSGAIDTSP 310 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD SQIVF SDR G Q+Y+M ++G +RIS + +Y PVWSP+GDLIAFT+ + Sbjct: 311 CFSPDGSQIVFNSDRGGSPQIYIMPASGGGARRISY-GQGTYGSPVWSPRGDLIAFTRIA 369 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-----LYSID 422 G F++GVM DG+ ER++ + +++P++ P+GR L + R+ G + +D Sbjct: 370 GGMFSLGVMAPDGTGERIMTQGFTVESPSFCPNGRVLAYCRQSRAGAGGAGFSSTIGMVD 429 Query: 423 LNGRNETLINTPAYASDPQWVGF 445 + G N+ ++ TP ASDP W Sbjct: 430 ITGFNDRVLPTPEAASDPAWSPL 452 >gi|254180824|ref|ZP_04887422.1| putative TolB protein [Burkholderia pseudomallei 1655] gi|184211363|gb|EDU08406.1| putative TolB protein [Burkholderia pseudomallei 1655] Length = 430 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 114/444 (25%), Positives = 192/444 (43%), Gaps = 20/444 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +L + + L+ GG + HA V V + IA F++ L +V+ Sbjct: 1 MTKLGFRALVASCLIAAGG----AAHAQVNVLITGVGSTQFPIATANFLNEASLPQQVTS 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL RS F+ + S + F W + GA V G V +E + +V Sbjct: 57 VVRGDLARSGKFSNVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKVN 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 F L+D ++ + G +S + RK H I+D IYQ + G +G FN+R+ +V + Sbjct: 114 FILYDTVKQQSLGGLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTGN 173 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 L + D DG N S++ I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 ----VYKLLISDSDGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLP 227 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 228 TGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDT 286 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIA 362 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A Sbjct: 287 EPFYSPDGKWIYFTSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLLA 345 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + + ++P+++ +G+ ++++ + G + D Sbjct: 346 YISRTGGGFKLYVQDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSD 405 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 406 GSAPPQILSVQGGAIREPSWGPFM 429 >gi|332525604|ref|ZP_08401759.1| translocation protein TolB [Rubrivivax benzoatilyticus JA2] gi|332109169|gb|EGJ10092.1| translocation protein TolB [Rubrivivax benzoatilyticus JA2] Length = 434 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 102/412 (24%), Positives = 198/412 (48%), Gaps = 15/412 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 +V + + IA F L VS +V DL RS +F + + Sbjct: 35 QFRVDVSGVGARQIPIAIAPFRDEGALPTPVSGIVGADLARSGMFRVAGSPVAL----DE 90 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 S+ DW + G +V G V + RL + F LWD+ +Q++ + A R Sbjct: 91 RSVVAAADWRARGVDAVVAGSVTRMADGRLDIRFTLWDIVKGEQLVAQSKLVLAADLRLT 150 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH I+D I++++TGE+G +RI++V ++ + +L V D DG + S + I+ Sbjct: 151 AHRIADAIHEALTGERGVNATRIVYVVKAG----KRYTLNVTDADGEGGQVALASPEPII 206 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ +++AY +++ + V + I + +++ +FR AP +S +G+ + Sbjct: 207 -SPAWSPDGRELAYVSFETQKA--VVWVQDLITGSRRKLADFRGSNSAPAWSPDGRELAM 263 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ +D +Y++ RLT++ I+ Y+PD I F SDR G Q+Y + + Sbjct: 264 TLTRDGISQLYAMPRAGGTPRRLTSSSAIDTEPVYAPDGRSIFFVSDRGGGPQVYRLPLD 323 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R++ + P SP G L+A+ G+ F + + R L + + ++ Sbjct: 324 GGGPQRVTFTGGYN-ISPAVSPDGKLLAYISRQGDAFKLMTLDLAAGGVRTLTDTRDDES 382 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGF 445 P+++P+G+ ++++ ++ G L + L+G + L+++ A +P W F Sbjct: 383 PSFAPNGKLIVYATRQQGR--DVLMTTTLDGSFKTRLVSSGADMREPAWGPF 432 >gi|304413883|ref|ZP_07395300.1| translocation protein [Candidatus Regiella insecticola LSR1] gi|304283603|gb|EFL91998.1| translocation protein [Candidatus Regiella insecticola LSR1] Length = 433 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 98/434 (22%), Positives = 197/434 (45%), Gaps = 14/434 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK--VSEVVSKDLQR 75 +++ + +++A V++ + P+++ + ++ +V+ DL+ Sbjct: 7 VMLGFLMLWANALYAGVRIEITQGVDSARPIAVVPFTWQGSGVASEDKDIAAIVAADLRN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S FN I + ++ ++ + I W++LG +V G++ + + ++L D Sbjct: 67 SGKFNPIDKTRMPERPSSAEEI-TPSAWSALGINAVVIGQIQPSVEGHYLISYQLVDTSG 125 Query: 136 R-KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 K ++ + + W R +HT SD+I++ +TG KG F +RI ++ + + L Sbjct: 126 TVKTVLAQNQYKIKQQWLRHASHTASDEIFEKLTGIKGAFRTRIAYIVQ-IHDKQRPYEL 184 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DG N +++ + L P +SP+ K+AY T++ ++ T + + I Sbjct: 185 RVADYDGHN-QFVVHRSAEPLMSPAWSPDGSKIAYVTFESGQ--SALVVQTLANSGIREI 241 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +F AP FS +G + ++ K +++IY +DL S ++T++ N S+ PDS Sbjct: 242 ASFPRHNGAPAFSPDGSKLAFALSKSGSLNIYLMDLASGHITQITDSRSNNTEPSWFPDS 301 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + + SD+ G+ Q+Y + N +RI+ + V S G +A + I Sbjct: 302 QNLAYTSDQGGRPQVYKININQRAPERITWQGAQNQDVEV-SHDGKFMALVASNSGNQHI 360 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LIN 432 ++L + + P+ SP+G +I+S K G GS L + +GR + L Sbjct: 361 VKQDLSTGAVQVLTDSFLDETPSISPNGLMIIYSSTKRG-VGSVLQLVSTDGRFKAHLPA 419 Query: 433 TPAYASDPQWVGFM 446 S P W ++ Sbjct: 420 NDGKFSFPAWSPYL 433 >gi|258543663|ref|YP_003189096.1| translocation protein TolB [Acetobacter pasteurianus IFO 3283-01] gi|256634741|dbj|BAI00717.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-01] gi|256637797|dbj|BAI03766.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-03] gi|256640851|dbj|BAI06813.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-07] gi|256643906|dbj|BAI09861.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-22] gi|256646961|dbj|BAI12909.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-26] gi|256650014|dbj|BAI15955.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-32] gi|256653004|dbj|BAI18938.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656058|dbj|BAI21985.1| secretion system type I outer membrane protein TolB [Acetobacter pasteurianus IFO 3283-12] Length = 454 Score = 365 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 154/443 (34%), Positives = 243/443 (54%), Gaps = 19/443 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 L + ++ + G F + ++ + A +P+ I F LG K++E Sbjct: 24 RSLLGASVAAGGIMAMPVGAFAAASAPEAEITVDQARTAPIPIIIPNFGGG--LGEKIAE 81 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V++ DL + +F ++ P F S+GA + G +RVE Sbjct: 82 VLTNDLNNTGLFKVMPGS-------TTSGTPDFVTSKSMGAHAQ-VTGSVSGGGSSVRVE 133 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RLWDV +QI G + +S A+WR+IAH + D IY+ + GEKG F++RI F+S S G Sbjct: 134 MRLWDVLSHQQIQGTAYTTSAANWRRIAHIVGDVIYERMLGEKGYFDTRIAFISRSGPRG 193 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L VMD+DGAN R LT + + PRFSP + ++A+ +Y + RVYL D Sbjct: 194 HQRTRLAVMDQDGANARMLTTGK-WLTLTPRFSPVKDQIAFMSYANNRP-RVYLFDLTSG 251 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R + +G F + APRFS +G+ ++SV ++ D+Y VDL S + ++T++ I+ S Sbjct: 252 RQ-QILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYIVDLASGSRRQITSSGAIDTSP 310 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD SQIVF SDR G Q+Y+M ++G +RIS + +Y PVWSP+GDLIAFT+ + Sbjct: 311 CFSPDGSQIVFNSDRGGSPQIYIMPASGGGARRISY-GQGTYGSPVWSPRGDLIAFTRIA 369 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK-----DGDTGSKLYSID 422 G F++GVM DG+ ER++ + +++P++ P+GR L + R+ S + +D Sbjct: 370 GGMFSLGVMAPDGTGERIMTQGFTVESPSFCPNGRVLAYCRQSRAGAGGAGFNSTIGMVD 429 Query: 423 LNGRNETLINTPAYASDPQWVGF 445 + G N+ ++ TP ASDP W Sbjct: 430 ITGFNDRVLPTPEAASDPAWSPL 452 >gi|167586273|ref|ZP_02378661.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia ubonensis Bu] Length = 431 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 108/443 (24%), Positives = 190/443 (42%), Gaps = 18/443 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA F + L +V+ Sbjct: 3 LMTKLGFRALVASCLIAAGS----AANAQVNVLITGVGSTQFPIATANFANEAGLPQQVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V DL RS F I S + W + GA V G V ++ + +V Sbjct: 59 SIVRADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNRDASGQYKV 115 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 F L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V +S Sbjct: 116 NFILYDTVKQQSLGGLSLTANDGTLRTAGHKIADYIYQKLLGTRGVFATRLSYVIKSGN- 174 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + D DG N R S + I+ P +SPN KVAY +++ + + VY+ D Sbjct: 175 ---RYQLQISDSDGQNPRIALSSTEPII-SPAWSPNGTKVAYVSFERKKPI-VYIHDLPT 229 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + + + AP +S + + +++ IY+V+ RLT + I+ Sbjct: 230 GRRY-IVSDQKGNNSAPAWSPDSQTLSVALSLTGNTQIYAVNSTGGGLRRLTQSNSIDTE 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAF 363 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGRLLAY 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G F + V + S+ ++P+++ +G+ L+++ + G D Sbjct: 348 ISRTGGGFKLYVQDLQTGAANAITNTSHDESPSFAANGQYLLYATQSGGRNVLAAVPSDG 407 Query: 424 NGRNETLINTPAYASDPQWVGFM 446 + + L +P W FM Sbjct: 408 SAPPQILSVQGGSVREPSWGPFM 430 >gi|33603212|ref|NP_890772.1| translocation protein TolB [Bordetella bronchiseptica RB50] gi|67462004|sp|Q7WFN4|TOLB_BORBR RecName: Full=Protein tolB; Flags: Precursor gi|33568843|emb|CAE34601.1| putative TolB-like translocation protein [Bordetella bronchiseptica RB50] Length = 441 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 112/418 (26%), Positives = 193/418 (46%), Gaps = 15/418 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 A ++V + + +A F D G ++EV+ DL R+ F LI+ Sbjct: 35 QPAQAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQFRLINAAG--- 91 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 N DS DW + GA L G + + R V +RL D + Q+ G F + Sbjct: 92 SGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTEQ 151 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + S Sbjct: 152 ELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGST----YELQVADADGQNPQVALRS 207 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ I+ P +SP+ ++AY +++ V + T A + NF+ AP +S +G Sbjct: 208 REPII-SPSWSPDGSRLAYVSFESGKP--VVYVHTLATSARIPVANFKGNNSAPAWSPDG 264 Query: 270 KRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + +++ +D IY V R+T + I+ +++PD I+F SDR G Q+ Sbjct: 265 SQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQI 324 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y +G D +R++ + + P SP G + + F I + E LL + Sbjct: 325 YQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLLTD 383 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 384 GRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 439 >gi|261868492|ref|YP_003256414.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413824|gb|ACX83195.1| hypothetical protein D11S_1837 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 426 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 105/441 (23%), Positives = 193/441 (43%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + I + L +++ GF A V++ + + P+++ K+ ++E+ Sbjct: 1 MKVVIRIFGLFIMLLGF-AMVARAEVRIVIDEVMDSARPIAVVPFKWNGPGSAPANIAEI 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL+ S FN + + Q+ T+ + + W++LG + ++ G+V + + Sbjct: 60 ISADLRNSGKFNPLPESKMPQQPTSASEV-NPEAWSALGIEAVIVGQVTP-SNGGFDIAY 117 Query: 129 RLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + ++ R AHTISD+ ++ +TG +G F +RI +V + Sbjct: 118 QLVDTMGSVGSILSQNQYTVMQKWLRYGAHTISDETFEKLTGIRGAFRTRIAYVVQKN-G 176 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + V D DG N +++ Q P +SP+ +K+AY T++++ V + + Sbjct: 177 GSQPYEVRVADYDGFN-QFIVNRSSQPFMSPAWSPDGKKLAYVTFENKKAQVV--LQDLV 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A K + +F AP FS +G R + KD ++IY +L S +LT+ N Sbjct: 234 SMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQVSQLTSGAGNNTE 293 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD IVF SDR G Q+Y M ++G I S G+L+ Sbjct: 294 PSWSPDGQSIVFTSDRGGSPQVYRMSASGGGASLI-----GGRGSGQISSDGNLLVMVDV 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I +L ++P+ SP+G +I+S + G L + +GR Sbjct: 349 NN---NIVKKDLTSGSSEVLSSTFLDESPSISPNGIMVIYSSTQG--LGKVLQLVSTDGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKARLPGNDGQVKFPAWSPYL 424 >gi|238752127|ref|ZP_04613610.1| hypothetical protein yrohd0001_550 [Yersinia rohdei ATCC 43380] gi|238709704|gb|EEQ01939.1| hypothetical protein yrohd0001_550 [Yersinia rohdei ATCC 43380] Length = 386 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 94/393 (23%), Positives = 179/393 (45%), Gaps = 11/393 (2%) Query: 57 SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 +V +V+ DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 2 GPGTPPEEVGAIVAADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQV 60 Query: 117 IKEGKDRLRVEFRLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 V ++L D + ++ + R AHT SD++++ +TG KG F Sbjct: 61 QPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFR 120 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +V ++ G + L V D DG N +++ + L P +SP+ K+AY T++ Sbjct: 121 TRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESG 178 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++ T + A +++ +F AP FS +G + ++ K ++++Y ++L S Sbjct: 179 K--SALVIQTLANGAIRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLASGQI 236 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++T+ N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V Sbjct: 237 SQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV- 295 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G + +G I + ++L + + P+ +P+G +I+S + Sbjct: 296 SPDGKFLVLVSSNGGAQHIAKQDLETGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--L 353 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 G+ L + +GR + L T P W ++ Sbjct: 354 GAVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 386 >gi|33594232|ref|NP_881876.1| translocation protein TolB [Bordetella pertussis Tohama I] gi|67462002|sp|Q7VU03|TOLB_BORPE RecName: Full=Protein tolB; Flags: Precursor gi|33564307|emb|CAE43608.1| putative TolB-like translocation protein [Bordetella pertussis Tohama I] gi|332383646|gb|AEE68493.1| translocation protein TolB [Bordetella pertussis CS] Length = 438 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 112/418 (26%), Positives = 193/418 (46%), Gaps = 15/418 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 A ++V + + +A F D G ++EV+ DL R+ F LI+ Sbjct: 32 QPAQAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQFRLINAAG--- 88 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 N DS DW + GA L G + + R V +RL D + Q+ G F + Sbjct: 89 SGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTEQ 148 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + S Sbjct: 149 ELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGST----YELQVADADGQNPQVALRS 204 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ I+ P +SP+ ++AY +++ V + T A + NF+ AP +S +G Sbjct: 205 REPII-SPSWSPDGSRLAYVSFESGKP--VVYVHTLATSARIPVANFKGNNSAPAWSPDG 261 Query: 270 KRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + +++ +D IY V R+T + I+ +++PD I+F SDR G Q+ Sbjct: 262 SQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQI 321 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y +G D +R++ + + P SP G + + F I + E LL + Sbjct: 322 YQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLLTD 380 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 381 GRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 436 >gi|293390508|ref|ZP_06634842.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951042|gb|EFE01161.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 426 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 105/441 (23%), Positives = 193/441 (43%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + I + L +++ GF A V++ + + P+++ K+ ++E+ Sbjct: 1 MKVVIRIFSLFIMLLGF-TMVARAEVRIVIDEVMDSARPIAVVPFKWNGPGSAPANIAEI 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL+ S FN + + Q+ T+ + + W++LG + ++ G+V + + Sbjct: 60 ISADLRNSGKFNPLPESKMPQQPTSASEV-NPEAWSALGIEAVIVGQVTP-SNGGFDIAY 117 Query: 129 RLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + ++ R AHTISD+ ++ +TG +G F +RI +V + Sbjct: 118 QLVDTMGSVGSILSQNQYTVMQKWLRYGAHTISDETFEKLTGIRGAFRTRIAYVVQKN-G 176 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + V D DG N +++ Q P +SP+ +K+AY T++++ V + + Sbjct: 177 GSQPYEVRVADYDGFN-QFIVNRSSQPFMSPAWSPDGKKLAYVTFENKKAQVV--LQDLV 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A K + +F AP FS +G R + KD ++IY +L S +LT+ N Sbjct: 234 SMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQVSQLTSGAGNNTE 293 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD IVF SDR G Q+Y M ++G I S G+L+ Sbjct: 294 PSWSPDGQSIVFTSDRGGSPQVYRMSASGGGASLI-----GGRGSGQISSDGNLLVMVDV 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I +L ++P+ SP+G +I+S + G L + +GR Sbjct: 349 NN---NIVKKDLTSGSSEVLSSTFLDESPSISPNGIMVIYSSTQG--LGKVLQLVSTDGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKARLPGNDGQVKFPAWSPYL 424 >gi|330815668|ref|YP_004359373.1| Putative TolB protein [Burkholderia gladioli BSR3] gi|327368061|gb|AEA59417.1| Putative TolB protein [Burkholderia gladioli BSR3] Length = 433 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 114/445 (25%), Positives = 196/445 (44%), Gaps = 20/445 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + +L + + L+ G + +A V V + IA FV+ L V+ Sbjct: 3 LMTKLGFRALVASCLIAAGS----TANAQVNVLITGVGSTQFPIATANFVNEGGLPQSVT 58 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 VV DL R+ F+ + S T P + W + GA LV G V ++ +++V Sbjct: 59 AVVRADLARTGKFSNVDAGSTPIPETAP---VDYGAWKAKGANALVAGTVNRDASGQVKV 115 Query: 127 EFRLWDVKDRKQIIGKKFF--SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 +F L+D ++ + G S RK H I+D IYQ + G +G F++R+ +V+ S Sbjct: 116 DFMLFDTLKQQSLGGLSLTAGGDAESMRKTGHKIADFIYQKLMGVRGVFSTRLSYVTRSG 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 K L + D DG N S + I+ P +SP+ KVAY +++ + VY+ D Sbjct: 176 G----KYRLLISDSDGENAVPALTSSEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDL 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R I N + AP +S +G+ +++ IYSV RLT + I+ Sbjct: 230 PTGRRY-VISNQKGNNSAPAWSPDGQTLAVALSLTGNTQIYSVSATGTGLRRLTQSSSID 288 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD I F SDR G Q+Y M + G +R++ + P SP G L+ Sbjct: 289 TEPFYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGSAQRVTFTGSYN-TSPRVSPDGKLL 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ +G F + V + ++ ++P+++ +G+ ++++ + +G + Sbjct: 348 AYISRTGGGFKLYVQDLQTGAANAVTNTTHDESPSFAANGQYILYATQANGRSVLAAVPS 407 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D + + L +P W FM Sbjct: 408 DGSSPPQILPVQGGSFREPSWGPFM 432 >gi|115350731|ref|YP_772570.1| translocation protein TolB [Burkholderia ambifaria AMMD] gi|123027500|sp|Q0BHY7|TOLB_BURCM RecName: Full=Protein tolB; Flags: Precursor gi|115280719|gb|ABI86236.1| TolB, N-terminal domain protein [Burkholderia ambifaria AMMD] Length = 431 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 106/440 (24%), Positives = 185/440 (42%), Gaps = 14/440 (3%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 L K+ L+ + +A V V + IA F + L +V+ +V Sbjct: 2 RLMTKLGFRALVASCLIAAGAAANAQVNVLITGVGSTQFPIATANFANEAGLPQQVTSIV 61 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F I S + W + GA V G V +E + +V F Sbjct: 62 RADLARSGKFTNIDAGS---TPVPETASVDLGAWKAKGANAFVAGSVNREANGQYKVNFI 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ + G ++ + R H I+D IYQ + G +G F +R+ +V ++ Sbjct: 119 LYDTVKQQSLGGLSLTATDTTLRTAGHKIADYIYQKLLGVRGVFATRLSYVIKTGN---- 174 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L + D DG N R S + I+ P +SP+ KVAY +++ + + VY+ D R Sbjct: 175 RYQLQISDSDGQNARIALSSTEPII-SPAWSPSGTKVAYVSFERKKPI-VYIHDLPTGRR 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + AP +S + +++ IY+V+ RLT + I+ Y Sbjct: 233 Y-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGGGLRRLTQSSSIDTEPYY 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SPD I F SDR G Q+Y M + G +R++ + P SP G L+A+ Sbjct: 292 SPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRISPDGKLLAYISR 350 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G F + V + + ++P+++ +G+ L+++ + G D + Sbjct: 351 TGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQSGGRNVLAAVPSDGSAP 410 Query: 427 NETLINTPAYASDPQWVGFM 446 + L +P W FM Sbjct: 411 PQILSVQGGSVREPSWGPFM 430 >gi|307294753|ref|ZP_07574595.1| Tol-Pal system beta propeller repeat protein TolB [Sphingobium chlorophenolicum L-1] gi|306879227|gb|EFN10445.1| Tol-Pal system beta propeller repeat protein TolB [Sphingobium chlorophenolicum L-1] Length = 449 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 150/421 (35%), Positives = 220/421 (52%), Gaps = 19/421 (4%) Query: 38 VATNSANYSPVSIAFT----------KFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 V + S + I S ELG K++EV++ DL+ S +F+ + Sbjct: 35 VDVTDESSSNLKIVVPALPAQAEVSTPAGSSTELGRKIAEVIASDLKGSGLFDPSGPNGI 94 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR-LRVEFRLWDVKDRKQIIGKKFFS 146 + P + W + Q LV G V G + + V L+DV ++++ + + Sbjct: 95 PTIAFPEVTSPAYDKWGAY--QALVQGFVRTTGGEADITVGCYLYDVALKQELTRQGYVV 152 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 SP WR+ AH +D IY ++GE F+SRI +++ES G L +MD DGAN R++ Sbjct: 153 SPRDWRRAAHKCADAIYARLSGESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFI 212 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T + I PRFSP+ + + Y +Y + +R+Y+ D + + + + APR+S Sbjct: 213 TNGQS-IALTPRFSPDYKSIVYVSY-LNNRVRIYIYDIGTGKQ-RLVTESNNATFAPRWS 269 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+ L S+ D+Y V A +RLT I++ SYSPD QIVFESDR G + Sbjct: 270 PDGRNILFSMAVAGNTDVYRVSATGGAPQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQ 329 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 Q+YVM ++GS Q+RIS Y P WSP+GDLIAFTK SG+ F I VM G ER+L Sbjct: 330 QVYVMNADGSGQRRISHGG-GRYATPEWSPRGDLIAFTKISGD-FKIAVMTPSGDNERIL 387 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + P+WSP+GR L F R G G S+++ +DL G NE I TP SDP W Sbjct: 388 TNGWQDEQPSWSPNGRVLQFFRTTPGREGSSQVWQVDLTGVNERRIPTPLSGSDPAWGPL 447 Query: 446 M 446 + Sbjct: 448 L 448 >gi|88810552|ref|ZP_01125809.1| TolB [Nitrococcus mobilis Nb-231] gi|88792182|gb|EAR23292.1| TolB [Nitrococcus mobilis Nb-231] Length = 433 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 108/424 (25%), Positives = 200/424 (47%), Gaps = 14/424 (3%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 T + A + + + IA F + ++ ++ DL R+ + + + Sbjct: 17 STQVPAQLTIQITGGAEGALPIALVPFRVENGVPAPPEEMITIIRDDLYRTGLLQPLPRK 76 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL---RVEFRLWDVKDRKQIIGK 142 + + FQ+W LG LV G + + +V F L DV ++ GK Sbjct: 77 DLIAHPATLEEV-NFQNWRVLGVDNLVVGALASDPDSGYHGYQVSFELLDVYKANRLTGK 135 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 ++ P + R + HTISD I+QS+ G G FN++I +V + + L V D DG N Sbjct: 136 RYRVRPDALRTLGHTISDIIFQSLFGRPGGFNTQIAYVEIERNADQPVHKLIVADADGHN 195 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + S+ I P +SP++Q++ Y ++++ VY+ + + + + +F + A Sbjct: 196 PQVILTSKAPI-MSPAWSPDRQRIGYVSFENGRS-EVYVQEVASGK-RRTVASFNGINSA 252 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S G R +++ KD +IY +DL S + ++T+ I+ ++P+ QI+F SDR Sbjct: 253 PAWSPQGNRLALTLSKDGNPEIYILDLASESLRQITHNSSIDTEPVWTPNGQQIIFTSDR 312 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G Q+Y + S G +R++ + + P SP G L+A KF I V+ Sbjct: 313 GGSPQIYRLPSAGGKAERLTFEGSYNAR-PTLSPDGRLLALVHREDGKFKIAVLDLQTRL 371 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQ 441 R+L + ++P+++P+G +L++S G S+L ++ + GR +E L +P Sbjct: 372 TRVLTDGPLDESPSFAPNGATLLYSSVLGGK--SELATVSIYGRAHERLGVFNNAVQEPT 429 Query: 442 WVGF 445 W Sbjct: 430 WSPL 433 >gi|238026337|ref|YP_002910568.1| translocation protein TolB [Burkholderia glumae BGR1] gi|237875531|gb|ACR27864.1| Putative TolB protein [Burkholderia glumae BGR1] Length = 430 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 113/444 (25%), Positives = 195/444 (43%), Gaps = 20/444 (4%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +L + + L+ G + +A V V + IA FV+ L V+ Sbjct: 1 MTKLGFRSLVASCLIAAGS----AANAQVNVLITGVGSTQFPIATANFVNEAGLPQSVTA 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 VV DL R+ F+ I S + + + W + GA LV G V +E +++V+ Sbjct: 57 VVRADLARTGKFSNIDAGS---TPISESAPVDYSAWKAKGANALVAGTVNREANGQVKVD 113 Query: 128 FRLWDVKDRKQIIGKKFF--SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 F L+D ++ + G RK H I+D IYQ + G +G F++R+ +V+ S Sbjct: 114 FMLFDTVKQQSLGGLSLTATGDVEGMRKTGHKIADFIYQKLLGVRGVFSTRLSYVTHSGG 173 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 K L + D DG N S + I+ P +SP+ KVAY +++ + VY+ D Sbjct: 174 ----KYRLLISDSDGENAIPALTSSEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLP 227 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R I N + AP ++ +G+ +++ IYSV RLT + I+ Sbjct: 228 TGRRY-VISNQKGNNSAPAWAPDGQTLAVALSLTGNTQIYSVSATGTGLRRLTQSSSIDT 286 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIA 362 YSPD I F SDR G+ Q+Y M + G +R++ + P SP G L+A Sbjct: 287 EPFYSPDGRWIYFTSDRGGQPQIYRMPAQGESAGAAQRVTFTGSYN-TSPRVSPDGKLLA 345 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +G F + V + ++ ++P+++ +G+ ++++ + G + D Sbjct: 346 YISRTGGGFKLYVQDLQTGAANAVTNTTHDESPSFAANGQYILYATRAGGRSVLAAVPSD 405 Query: 423 LNGRNETLINTPAYASDPQWVGFM 446 + + L S+P W FM Sbjct: 406 GSSPPQILPVQGGSFSEPSWGPFM 429 >gi|170730224|ref|YP_001775657.1| translocation protein TolB [Xylella fastidiosa M12] gi|226705900|sp|B0U2E8|TOLB_XYLFM RecName: Full=Protein tolB; Flags: Precursor gi|167965017|gb|ACA12027.1| TolB protein precursor [Xylella fastidiosa M12] Length = 439 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 114/437 (26%), Positives = 210/437 (48%), Gaps = 13/437 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSK 71 L +L+ L+ + + + N + IA S VS VV+ Sbjct: 6 RWLAILVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSAGAPATDVSGVVAA 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + ++ T+ I RF W +L +V GRV+ + RVE+ L+ Sbjct: 66 DLNRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELF 124 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV++ K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ Sbjct: 125 DVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRY 184 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L V D DG N + + S + L P +SP+ +K+AY +++ + +Y+ D + Sbjct: 185 ALMVADSDGYNPQTIVRSAEP-LLSPDWSPDGKKLAYVSFE-KGGSSIYIQDIATGS-RE 241 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ +S Sbjct: 242 LVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPVWSS 301 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F SDR G+ Q+Y + S G R++ + V S I + SG + Sbjct: 302 DGKFIYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATASV-SYDDKKIVVAQGSGNVY 360 Query: 372 AIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 I +M + L S ++P+++P+ ++++ ++ G LY++ + R + Sbjct: 361 RIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADARVRQ 418 Query: 429 TLINTPAYASDPQWVGF 445 L++ + +P W + Sbjct: 419 RLVSVDSDVREPAWGPY 435 >gi|171463097|ref|YP_001797210.1| Tol-Pal system beta propeller repeat protein TolB [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192635|gb|ACB43596.1| Tol-Pal system beta propeller repeat protein TolB [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 403 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 111/416 (26%), Positives = 203/416 (48%), Gaps = 17/416 (4%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + + S IA +F ++L V+E++ +DL RS F + + + D Sbjct: 1 MNIEITGVGQSLYPIAVMRFKDENKLLTSVTEIIRQDLARSGYFKNTENGNAVE---SDD 57 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 P ++ W + GA LV G V++ G + + ++L+D++ + G SS + R A Sbjct: 58 GTPNYKSWAARGADALVVGSVVQTGGSQFEIHYKLFDIRKSVSLGGLNLNSSADNLRAAA 117 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H I+DDI + GE+G ++R+ +V + + L + D DG NIR S + I+ Sbjct: 118 HKIADDIIYKLLGERGVSSTRLSYVIKDG----KRYRLVISDADGQNIRNAMNSSEPII- 172 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ +KVAY +++D + +Y+ + R+ + N + AP +S +GK+ IS Sbjct: 173 SPSWSPDGKKVAYVSFEDRKPV-IYVHELATGRSIS-LSNQKGNNSAPAWSPDGKKLAIS 230 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + KD IY ++ RLT I+ YS D I F SDR G Q+Y M ++G Sbjct: 231 LSKDGNTQIYGINADGTGLHRLTRGNTIDTEPQYSADGRYIYFTSDRGGNPQIYRMSADG 290 Query: 336 ---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 KR++ K+ P SP G +A+ G + + ++ + L + ++ Sbjct: 291 EQAEGVKRVTF-KQGFVTSPRISPDGKYLAYIANIGGAYRLYILNLATGDAQALTDGTSD 349 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVGFMD 447 ++P+++ +GR +++S K G L ++ ++G ++ +++ P P W FMD Sbjct: 350 ESPSFAANGRYVLYSTKVGGKRI--LAAVSVDGNSKRVLSIPGSDVRQPSWGPFMD 403 >gi|15838495|ref|NP_299183.1| translocation protein TolB [Xylella fastidiosa 9a5c] gi|9106990|gb|AAF84703.1|AE004009_10 TolB protein precursor [Xylella fastidiosa 9a5c] Length = 430 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 114/433 (26%), Positives = 212/433 (48%), Gaps = 13/433 (3%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG---KVSEVVSKDLQR 75 +L+ L+ + + + N + IA D +G VS VV+ DL R Sbjct: 1 MLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADLNR 60 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F + ++ T+ I RF W +L +V GRV+ + RVE+ L+DV++ Sbjct: 61 SGQFRTLPLGQIIERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDVRN 119 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ +L V Sbjct: 120 GKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYALMV 179 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D DG N + + S + L P +SP+ +K+AY +++ + +Y+ D + + + Sbjct: 180 ADSDGYNPQTIVRSAEP-LLSPDWSPDGKKLAYVSFE-KGGSSIYIQDIATGS-RELVSS 236 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ ++S D Sbjct: 237 FRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDGKF 296 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I F SDR G+ Q+Y + S G R++ + V S I + SG + I + Sbjct: 297 IYFTSDRGGRPQIYKVASVGGTATRVTFQGNYNATTSV-SYDDKKIVVAQGSGNVYRIAM 355 Query: 376 MKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLIN 432 M + L S ++P+++P+ ++++ ++ G LY++ + R + L++ Sbjct: 356 MDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADARVRQRLVS 413 Query: 433 TPAYASDPQWVGF 445 + +P W + Sbjct: 414 VDSDVREPAWGPY 426 >gi|88705611|ref|ZP_01103321.1| TolB protein precursor [Congregibacter litoralis KT71] gi|88700124|gb|EAQ97233.1| TolB protein precursor [Congregibacter litoralis KT71] Length = 428 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 185/421 (43%), Gaps = 10/421 (2%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 P +A + + P +A F ++EVV +D +RS F+ +++ Sbjct: 13 PGMANAQLVIEITQGVDDPTPVAVVPFAWEGAGTAPADMAEVVQEDFERSGQFSPVARAD 72 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 + + + ++DW ++ ++ ++ GR EG L + + L+DV + +I Sbjct: 73 MLGFPSREEEV-FYRDWRAIASEYVLIGRARGEGDG-LSLSYELYDVLRQTRIAEGTVTG 130 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRY 205 R +AH +SD +Y+ +TG G F +R+++VS +G L + D DGA Sbjct: 131 PVGEARMLAHRVSDAVYEKLTGIPGAFATRLIYVSVTRNPTGKDYYRLTLADSDGARPIV 190 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 L SR+ I P +SP+ ++VAY +++ +++ NFR + +P + Sbjct: 191 LLESREPI-MSPSWSPDGKQVAYVSFETGRP--AIFRQVLASGEREQLTNFRGLNSSPAW 247 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + KD + DIY +D+ S R+T I+ S+ PD +F SDR G+ Sbjct: 248 SPDGNSMAMVLSKDGSPDIYLMDMASRRLTRVTRHYAIDTEPSWMPDGRSFLFTSDRGGR 307 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+Y +R++ + + V + G + ++ I + ++ ++ Sbjct: 308 PQIYRYDLRSGLTERVTFEGSYNARARV-AQDGRNVVLVHQREGEYQIAIHDLVTNRLQV 366 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 L ++P+ +P+G ++++ K S+D G L +P W + Sbjct: 367 LTNTDLDESPSIAPNGSMVLYATKYGDRGILSAVSVDG-GVKFRLPARSGDVREPAWSPY 425 Query: 446 M 446 M Sbjct: 426 M 426 >gi|331007792|ref|ZP_08330906.1| tolB protein precursor [gamma proteobacterium IMCC1989] gi|330418401|gb|EGG92953.1| tolB protein precursor [gamma proteobacterium IMCC1989] Length = 430 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 112/440 (25%), Positives = 215/440 (48%), Gaps = 19/440 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSP--VSIAFTKFVSIDELGGKVSEVVS 70 MK + LL+ +I F + + + + + +P + + + + L VS +++ Sbjct: 1 MKSLIPLLVSII--LFSSFSYGELTIRISKGVDNPTVIGVVPFNYTGSNALSEDVSTIIA 58 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR--LRVEF 128 DL+RS F+ I + + P+++ ++DW LG++ LV G + G + ++ F Sbjct: 59 NDLRRSGQFSPIDSSNMLSFPSLPENVV-YRDWRLLGSEYLVIGEISPNGPNGLGYQLVF 117 Query: 129 RLWDVKDRKQII-GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L+DV +K II + R +AH +SD +Y++ITG +G F++ I++V + S Sbjct: 118 SLFDVVSQKTIIFNEPIVVGADGLRDMAHYVSDVVYEAITGIRGAFSTDIIYVEQRSNS- 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L D DGA + L S I P +SP+ +KVAY +++ +++ D + Sbjct: 177 --QYQLIRADMDGARPQILVKSSQPI-LSPSWSPDGRKVAYVSFETGRPA-IFIQDLQTA 232 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + +++ N+ + AP +S +GK+ + + KD +IY +DL + A R+T I+ Sbjct: 233 Q-REQVTNYTGLNGAPAWSPDGKKLALVLSKDGNPEIYILDLATRALTRITKHFSIDTEP 291 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +++ D + I+F S+R GK Q+Y+ + +R++ + + + +P G I Sbjct: 292 TWTADGAGIIFTSNRGGKPQIYLASATEGYPQRLTFEGDYNARAQ-LTPDGKNIVMVHRR 350 Query: 368 GEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-G 425 F I + ++L E S ++PT +P+G +LI++ K G L S+ L+ G Sbjct: 351 EGVFHIATQNLETGTVKVLTTETSLDESPTIAPNGATLIYATKAGGKGI--LASVSLDAG 408 Query: 426 RNETLINTPAYASDPQWVGF 445 +T +P W F Sbjct: 409 TRFAFPSTSGDVREPAWSPF 428 >gi|238797730|ref|ZP_04641224.1| hypothetical protein ymoll0001_12380 [Yersinia mollaretii ATCC 43969] gi|238718371|gb|EEQ10193.1| hypothetical protein ymoll0001_12380 [Yersinia mollaretii ATCC 43969] Length = 386 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 177/393 (45%), Gaps = 11/393 (2%) Query: 57 SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRV 116 ++ +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 2 GPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQV 60 Query: 117 IKEGKDRLRVEFRLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 V ++L D + ++ + R AHT SD++++ +TG KG F Sbjct: 61 QPSADGSYVVSYQLVDTSGAAGSVLAQNQYKVTKQWLRYAAHTASDEVFEKLTGIKGAFR 120 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +V ++ G + L V D DG N +++ Q L P +SP+ K+AY T++ Sbjct: 121 TRIAYVVQTN-GGKFPHELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKIAYVTFESG 178 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S Sbjct: 179 K--SALVIQTLANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLGSGQI 236 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++T+ N S+ PDS + + SD+ G+ Q+Y + NG +RI+ + + V Sbjct: 237 SQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGAPQRITWEGSQNQNADV- 295 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G + +G I ++L + + P+ +P+G +I+S + Sbjct: 296 SPDGKFLVLVSSNGGAQHIAKQDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSTQG--L 353 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 G+ L + +GR + L T P W ++ Sbjct: 354 GAVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 386 >gi|254482467|ref|ZP_05095706.1| Tol-Pal system beta propeller repeat protein TolB [marine gamma proteobacterium HTCC2148] gi|214037158|gb|EEB77826.1| Tol-Pal system beta propeller repeat protein TolB [marine gamma proteobacterium HTCC2148] Length = 432 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 105/437 (24%), Positives = 203/437 (46%), Gaps = 10/437 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVS 70 MK + ++ L+ A + + +P +IA F ++ VV Sbjct: 1 MKRLILAIVPLLFALAALGARAELTIEITQGMDNPTAIAVVPFAWQGPGTAPEDIAWVVD 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F+ +S+ + + + I ++DW ++ ++ L+ GRV +G ++R+E+ L Sbjct: 61 SDLARSGQFSPVSRSDMLGRPSTQNDI-FYRDWRAIESEYLLIGRVSAQGT-QMRIEYEL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGII 189 +DV +KQ S R ++H +SD IYQ +TG +G F +R+L+VS V G Sbjct: 119 YDVLRQKQAHKGVEVGSVNEARMLSHRVSDAIYQKLTGIRGAFATRLLYVSVTRVPGGKD 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DGA L SR+ + P +SP+ +++Y +++ +Y + A Sbjct: 179 YYRLTLADSDGARPIVLLESREPV-MAPGWSPDGTQISYVSFESGRPA-IYRQNLSTG-A 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ NF+ + AP +S +G + + KD + DIY ++L + R+T I+ ++ Sbjct: 236 REQLTNFKGLNGAPAWSPDGNTMAMVLSKDGSPDIYLMNLMTKKLTRITRHYAIDTEPTW 295 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD ++F SDR G+ Q+Y +R++ + + V + G + Sbjct: 296 MPDGRSLMFTSDRGGRPQIYRYDLRTGTTERVTFEGGYNARARV-AQDGRNVVLVHQQNG 354 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 +F I ++ ++ ++L ++P+ +P+G +++ K G S+D G Sbjct: 355 QFHIALLDLVTNRLQVLTSTQLDESPSIAPNGSMVLYGTKHAGRGILAAVSVDG-GVKFR 413 Query: 430 LINTPAYASDPQWVGFM 446 L + +P W +M Sbjct: 414 LPSRDGDVREPAWSPYM 430 >gi|269959053|ref|YP_003328842.1| translocation protein [Anaplasma centrale str. Israel] gi|269848884|gb|ACZ49528.1| translocation protein [Anaplasma centrale str. Israel] Length = 441 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 245/445 (55%), Gaps = 15/445 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTS-IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS--- 66 + + C+L + A + V N V I+ S L +V Sbjct: 1 MRVFFFACVLPAVSAFLLCCQGAVAALGVDITKGNVERVRISVAPMHSSTNLEKEVGKSC 60 Query: 67 -EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 VV DL + +F+ + T P+ +P W S+G VLVTG + + +DR++ Sbjct: 61 VRVVLHDLNSTGIFDASWKLPAGGFGTTPEGMPDSDAWTSVGRDVLVTGSIKEFSQDRVK 120 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V +WDV +Q+ GK F + +WR+ AH++SD IY ITGE G FN+RI +V+E+ + Sbjct: 121 VRLFIWDVASGRQLSGKSFNFAVGNWRRAAHSMSDSIYSRITGEGGYFNTRIAYVAETGL 180 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G + + +MD+DGAN Y+T S + + PRFSP+ + + Y +Y + + L D Sbjct: 181 PGSRR--IAIMDQDGANNVYIT-STGEFVSTPRFSPDARSLVYMSY-AKSSGSIVLHDLE 236 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +G R + +PRFS +GK L+S A +IYS+DL+S + RLTN IN Sbjct: 237 TG-YSTALGGVRGVNSSPRFSPDGKHVLLSESAQGATNIYSIDLKSGKSTRLTNNKSINT 295 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SASYSPD IVF SDR G+ QLYVM ++G++Q+RIS K Y PVWSP+GD IAFTK Sbjct: 296 SASYSPDKKSIVFNSDRSGRPQLYVMNADGTNQRRISSGK-GGYSAPVWSPRGDWIAFTK 354 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG----SKLYSI 421 G+ F IGVMK DGS ERLL + + +P+WSP+GR ++F+++ S+L ++ Sbjct: 355 ADGKNFHIGVMKPDGSGERLLAKGHMVDSPSWSPNGRVILFTQQDPPSATHPFRSRLVTV 414 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D+ G N ++ P AS+ W + Sbjct: 415 DITGTNTQTLDVPTNASNAHWSPVL 439 >gi|317402474|gb|EFV83042.1| TolB protein [Achromobacter xylosoxidans C54] Length = 440 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 114/417 (27%), Positives = 195/417 (46%), Gaps = 15/417 (3%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 A ++V + + +A F D G ++EV+ DL R+ F LIS Sbjct: 35 PAQAQLRVDISGTGATQYPVAIADFAVDDAHGRALAEVIRADLTRTGQFRLISAAG---S 91 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 N DS DW + GA + G +++ R V +RL D + Q+ G F + Sbjct: 92 GLNVDSPIAHDDWRAKGADFIAYGSIVRGNDGRYDVRYRLADTVKKGQLDGVAFSGTEQE 151 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + SR Sbjct: 152 LRRVAHQIADRIYEKITGVRGVFSTRIAYVLKQGAT----YELQVADADGQNPQVALRSR 207 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + I+ P +SP+ K+AY +++ V + T A + NF+ AP +S +G Sbjct: 208 EPII-SPSWSPDGSKLAYVSFESGKP--VVYVHTLATSARVPVANFKGNNSAPGWSPDGT 264 Query: 271 RALISVQKDEAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + +++ +D IY V +R+T + I+ S++PD I+F SDR G Q+Y Sbjct: 265 QLAVALTRDGLSQIYIVSAAGGSNMKRVTRSPGIDTEPSFTPDGRSIIFTSDRSGGPQIY 324 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +G D +R++ + + P SP G + + F I + E LL + Sbjct: 325 QTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSENLLTDG 383 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + Q+P+++P+G ++++ ++G S L + +GR +TL +P W F Sbjct: 384 RDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDGRVRQTLSVLNGEIREPTWGPF 438 >gi|260912913|ref|ZP_05919398.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella dagmatis ATCC 43325] gi|260632903|gb|EEX51069.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella dagmatis ATCC 43325] Length = 432 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 100/444 (22%), Positives = 189/444 (42%), Gaps = 22/444 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + + LL+L+ + A V++ + + P+++ K+ ++++ Sbjct: 1 MKLVARVWSLLILLCFSVLQTAQAEVRIVIDEGVDSARPIAVVPFKWNGPGSAPADIADI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S FN I + Q+ T+ + + W SLG +V G+V + + Sbjct: 61 IASDLRNSGKFNPIPVNRMPQQPTSVAEV-NPEAWASLGIDAVVVGQVTP-ANGGFNIAY 118 Query: 129 RLWDV-----KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +L D + ++ + R AHT+SD+ ++ +TG KG F +RI ++ + Sbjct: 119 QLVDTIGATGSAGAVLAQNQYTVTNKWLRYGAHTVSDETFEKLTGIKGAFRTRIAYIVQK 178 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G + V D DG N +++ Q L P +S + +K+AY ++++ V + Sbjct: 179 N-GGSQPYEVRVSDYDGFN-QFIVNRSSQPLMSPAWSADGKKLAYVSFENRKSQLV--VQ 234 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 A K + +F+ AP FS +G R + +D ++IY ++L S +LT Sbjct: 235 DLGSGARKVVASFKGHNGAPAFSPDGSRLAFASSQDGVLNIYVMNLGSGQIAQLTRGAGN 294 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N S+SPD IVF SDR G Q+Y M + G +S + + + G + Sbjct: 295 NTEPSWSPDGQTIVFTSDRSGSPQVYQMSATGGGASLVSAGGRS--YSGQITADGSTLIM 352 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I +L ++P+ SP+G +I+S + G L + Sbjct: 353 ISGD----NIIKKDLVSGSTEVLSSTFLDESPSISPNGIMIIYSSTQG--LGKVLQLVSA 406 Query: 424 NGRNE-TLINTPAYASDPQWVGFM 446 +GR + L P W ++ Sbjct: 407 DGRFKARLPGNDGQVKFPAWSPYL 430 >gi|33598302|ref|NP_885945.1| translocation protein TolB [Bordetella parapertussis 12822] gi|67462003|sp|Q7W476|TOLB_BORPA RecName: Full=Protein tolB; Flags: Precursor gi|33566860|emb|CAE39075.1| putative TolB-like translocation protein [Bordetella parapertussis] Length = 441 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 111/418 (26%), Positives = 192/418 (45%), Gaps = 15/418 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 A ++V + + +A F D G ++EV+ DL R+ F LI+ Sbjct: 35 QPAQAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQFRLINAA---D 91 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 N DS DW + GA L G + + R V +RL D + Q+ G F + Sbjct: 92 SGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTEQ 151 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R++AH I+D IY+ ITG +G F++RI +V + + L V D DG N + S Sbjct: 152 ELRRVAHQIADRIYEKITGVRGVFSTRIAYVLKRGST----YELQVADADGQNPQVALRS 207 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ I+ P +SP+ ++AY +++ V + T A + NF+ AP +S +G Sbjct: 208 REPII-SPSWSPDGSRLAYVSFESGKP--VVYVHTLATSARIPVANFKGNNSAPAWSPDG 264 Query: 270 KRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + +++ +D IY V R+T + I+ +++PD I+F SDR G Q+ Sbjct: 265 SQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQI 324 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y +G D +R++ + + P SP G + + F I + E LL + Sbjct: 325 YQTGLDGGDARRLTFNGGYN-ISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLLTD 383 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 + Q+P+++P+G ++++ ++G S L + + R +TL +P W F Sbjct: 384 GRDDQSPSFAPNGMQVLYAAIQNGR--SVLAGVSSDRRVRQTLSVLNGEIREPTWGPF 439 >gi|198282216|ref|YP_002218537.1| Tol-Pal system beta propeller repeat-containing protein TolB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665098|ref|YP_002424581.1| tol-pal system beta propeller repeat protein TolB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246737|gb|ACH82330.1| Tol-Pal system beta propeller repeat protein TolB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517311|gb|ACK77897.1| tol-pal system beta propeller repeat protein TolB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 422 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 120/431 (27%), Positives = 203/431 (47%), Gaps = 13/431 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 K L + L+ F A + V S + IA F V+EVV DL Sbjct: 3 KRFWTLAIFLLAWAFVLPAQAALTVEITKNVASALPIAIPSFGPGIAGQPSVAEVVRNDL 62 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 + S +F +I + P + + DW ++GA L G V V +++V Sbjct: 63 RHSGLFRVIDPAGYPADPRAPGGV-KAADWTAVGATGLAVGSVEPR-NGGYAVNVYVYNV 120 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 +++ +F S A AH ++D IYQ+ TG+ G F SRI +V ++ + L Sbjct: 121 STGQELTAHRFTCSAAELHMTAHHVADVIYQAFTGKPGPFASRIAYVRQTGAN----YEL 176 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V + DG N + R + F P +SP+ +++AY TY + + +Y+ D + + I Sbjct: 177 LVAESDGWNPHPIVRGRMPV-FSPVWSPDNRRLAYVTYANARAV-IYVQDLATGQ-RQSI 233 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 ++ AP FS NG + ++Y +LQ+ +LT+ IN S ++SPD Sbjct: 234 APGGEIVSAPAFSPNGTELAYARSSGGHTELYVANLQTGQRRQLTHDDAINTSPTWSPDG 293 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 S+I+F SDR G Q+Y M ++G R+S D + PV+SP G+ IAF + +A+ Sbjct: 294 SRIIFVSDRAGGPQIYAMNASGGAAHRLSYDGSYNA-SPVYSPAGNAIAFIHRTNGVYAL 352 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 VM DGS R+L N P+++ +G+ +++ ++ G L + L+G+ ++++ Sbjct: 353 AVMNPDGSGVRVLDAQGNCDHPSFAGNGQMILYGTQRGGRK--VLAEVSLDGKTMAILHS 410 Query: 434 P-AYASDPQWV 443 S P W Sbjct: 411 NAGEDSQPAWS 421 >gi|303256190|ref|ZP_07342206.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderiales bacterium 1_1_47] gi|331001246|ref|ZP_08324872.1| Tol-Pal system beta propeller repeat protein TolB [Parasutterella excrementihominis YIT 11859] gi|302860919|gb|EFL83994.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderiales bacterium 1_1_47] gi|329568973|gb|EGG50769.1| Tol-Pal system beta propeller repeat protein TolB [Parasutterella excrementihominis YIT 11859] Length = 437 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 117/446 (26%), Positives = 196/446 (43%), Gaps = 14/446 (3%) Query: 1 MSLR-FFIAEELNMKINLCLLLVLIGGFFPT-SIHAFVKVATNSANYSPVSIAFTKFVSI 58 M +R + +L + + L V + G A + V + IA F Sbjct: 1 MEMRERMVRRDLGLDRRVFLKAVGLAGIAAAEPAFAQLFVNIQGVGANQFPIAIQPFFGN 60 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 E ++E++ DL RS F L+S D+ T D P ++ ++ G G V + Sbjct: 61 SEAPENIAEIIGNDLVRSGFFRLVSCDAA----TALDKDPDWKALSTAGVGAFADGSVTR 116 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 R ++FRL+D +++ + S R AH I+D I++ +TGEKGDF +RI Sbjct: 117 AADGRYEIKFRLFDPVKKQETDEASYISPKDDLRLYAHKIADRIFERLTGEKGDFATRIA 176 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +VS+ G ++ V D DG N + R I+ +SPN +++AY +++ Sbjct: 177 YVSQQ---GKNNYAIMVADSDGYNPQVALRIRHPIISI-DWSPNGRQIAYTSFETGKP-T 231 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 V++ D + +++ FR AP FS +G +++ KD IY +D+ + T Sbjct: 232 VWIHDLSTGK-RRQVAAFRGNNSAPAFSPDGGTLAVALSKDGGTKIYLLDVNGQNLRQFT 290 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I+ ++SPD I F SDR G Q+Y G +RIS A P SP+ Sbjct: 291 TGSSIDTEPAFSPDGKYIYFTSDRGGNPQIYRKPVVGGSAERISF-GNAYAISPAVSPKN 349 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 D +A+ +G F + L E ++P++SP+G +I++ + G Sbjct: 350 DQVAYIVRTGGHFKLVQQDLATGNVIPLSEIGKNESPSYSPNGNMIIYASEVGGKGVLST 409 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 S D + R+ L T +P W Sbjct: 410 VSTDGSTRS-RLSGTSGDIREPSWGP 434 >gi|332528330|ref|ZP_08404330.1| translocation protein TolB [Hylemonella gracilis ATCC 19624] gi|332042201|gb|EGI78527.1| translocation protein TolB [Hylemonella gracilis ATCC 19624] Length = 433 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 111/420 (26%), Positives = 200/420 (47%), Gaps = 15/420 (3%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 HA +V + V + F + K+S +V DL+RS F + + Sbjct: 4 APAHAQFRVEVAGVGLTQVPFSVAPFRGEAAIQQKISAIVLADLERSGQFRSVVLNK--A 61 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + + P W G+ LV G V + R V FRLWDV K + G+ F S A Sbjct: 62 DALDETARPDLAAWRQAGSDALVAGSVTRMADGRFDVRFRLWDVVAGKDLGGQSFLVSAA 121 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R AH ++D +Y+ +TG+KG F++RI +V+++ ++SL V D DG + S Sbjct: 122 DLRLSAHRVADYVYEQLTGDKGVFSTRIAYVTKT----DQRHSLWVADADGEAAQPALSS 177 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + I+ P +SP+ +++AY +++ + VY+ + R + + +FR AP +S +G Sbjct: 178 PEPII-SPTWSPDGRQLAYVSFESRRPV-VYIHEVSTGR-RRLVASFRGSNSAPAWSPDG 234 Query: 270 KRALISVQKDEAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 + +++ +D +Y++DL + A E RLT + I+ +YS D I F SDR G Q Sbjct: 235 RFLAVTLSRDGGSQLYTLDLNNLAAEPLRLTRSNGIDTEPTYSADGRFIYFVSDRGGSPQ 294 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +Y + + G + +R++ + P S G +A+ +F + VM+ +L Sbjct: 295 IYRLPAKGGNPERVTFTGTYN-ISPALSADGRWLAYISRINGEFKLHVMELASGAVTMLT 353 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + + P+++P+ R L+++ K++ L + L+G L +P W F+ Sbjct: 354 NTVSDENPSFAPNSRLLLYATKQNDR--EALMTTTLDGAIKARLSGQGGDIREPDWGPFV 411 >gi|89094843|ref|ZP_01167776.1| TolB, N-terminal:TolB, N-terminal [Oceanospirillum sp. MED92] gi|89080898|gb|EAR60137.1| TolB, N-terminal:TolB, N-terminal [Oceanospirillum sp. MED92] Length = 436 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 107/441 (24%), Positives = 201/441 (45%), Gaps = 13/441 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHA---FVKVATNSANYSPVSIAFTKFV--SIDELGGKVSE 67 MK + L+ L F + A + + P +A F L ++ Sbjct: 1 MKNIVVFLVALYSTMFAVNSFASDGDLAIEITKGVDEPTPVAVVPFSWDGSSALPEDIAR 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +VS DL R+ +F ++ + + D + F+DW + LV GR L VE Sbjct: 61 IVSADLGRTGLFAMMERKNMLSFPARRDQV-FFRDWRVSNTEFLVIGRQQPAANGELVVE 119 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVS 186 F L+DV + ++ ++ + R IAH ISD IY+ +TG +G F++RI++V+ + Sbjct: 120 FELYDVLKEQPLLAERVTGRRDNMRGIAHYISDMIYEKLTGIRGAFSTRIVYVTAHAFGE 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ L + D DGA + + I P +S + K+AY +++ R+Y+ Sbjct: 180 GKVRYRLKMADADGARPITIREQSEPI-MSPTWSRDATKLAYVSFETGKP-RIYIQHLAT 237 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +R+ +FR + AP +S +G + + + KD +IY DL+S R+T+ I+ Sbjct: 238 GK-RERLPSFRGLNGAPAWSPDGTKLALVLSKDGNPEIYIQDLRSPRLIRVTHHYGIDTE 296 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++SPD ++F SDR G+ Q+Y + +RI+ + + + G +A Sbjct: 297 PTWSPDGQSLIFTSDRGGQPQIYRIHLPTRQLERITYEGNYNSRG-RLTLDGRFLAMVHR 355 Query: 367 SGEK-FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + F I V + +L + ++PT +P+G ++++ +K ++D N Sbjct: 356 GNDNVFRIAVQDLKTGRLDVLTDTFLDESPTIAPNGSIILYATQKGVKGVLGGVTLDGNV 415 Query: 426 RNETLINTPAYASDPQWVGFM 446 R L + +P W ++ Sbjct: 416 RF-ILPSASGDVREPAWSPYL 435 >gi|28198796|ref|NP_779110.1| translocation protein TolB [Xylella fastidiosa Temecula1] gi|32699695|sp|Q87CZ5|TOLB_XYLFT RecName: Full=Protein tolB; Flags: Precursor gi|28056887|gb|AAO28759.1| TolB protein precursor [Xylella fastidiosa Temecula1] gi|307579949|gb|ADN63918.1| translocation protein TolB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 439 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 113/437 (25%), Positives = 209/437 (47%), Gaps = 13/437 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSK 71 L +L+ L+ + + + N + IA S VS VV+ Sbjct: 6 RWLAMLVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSAGAPATDVSGVVAA 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + ++ T+ I RF W +L +V GRV+ + RVE+ L+ Sbjct: 66 DLNRSGQFRTLPLGQITERPTHGSEI-RFPTWQALKQDYIVVGRVLDARQGTYRVEYELF 124 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV++ K+++G + ++ R +AH ++D IY+ ITG +G F +RI +V+ S G ++ Sbjct: 125 DVRNGKRMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRY 184 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L V D DG N + + S + L P +S + +K+AY +++ + +Y+ D + Sbjct: 185 ALMVADSDGYNPQTIVRSAEP-LLSPDWSSDGKKLAYVSFE-KGGSSIYIQDIATGS-RE 241 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +FR + AP F+ +G R +S+ + +IY +DL S +LTN+ I+ +S Sbjct: 242 LVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPVWSS 301 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F SDR G+ Q+Y + S G R++ + V S I + SG + Sbjct: 302 DGKFIYFTSDRGGRPQIYKVASVGGAATRVTFQGNYNASASV-SYDDKKIVVAQGSGNVY 360 Query: 372 AIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 I +M + L S ++P+++P+ ++++ ++ G LY++ + R + Sbjct: 361 RIAMMDQSSGSTVWNTLSTGSLDESPSFAPNASMVLYAAREGGRG--VLYAVSADARVRQ 418 Query: 429 TLINTPAYASDPQWVGF 445 L++ + +P W + Sbjct: 419 RLVSVDSDVREPAWGPY 435 >gi|71909662|ref|YP_287249.1| translocation protein TolB [Dechloromonas aromatica RCB] gi|71849283|gb|AAZ48779.1| TolB, N-terminal:WD40-like Beta Propeller [Dechloromonas aromatica RCB] Length = 437 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 100/412 (24%), Positives = 190/412 (46%), Gaps = 14/412 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + A + + + F V+ V DL+RS +F L+ + + Sbjct: 37 QLSIEITGAGANRIPVTIVDFPGDPTAARVVTATVRADLERSGLFKLVDNGTA---AFDE 93 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 ++ +W GA L G + + R+ FRL+D + + G + ++ + R Sbjct: 94 NAPVNHAEWKGKGADALAAGSIARSTDGRMEARFRLYDTQKGVSLGGAAYVTNNSQLRAA 153 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D IY+ +TGEKG F++RI +V V + L + D DG N S + I+ Sbjct: 154 GHRIADFIYEKLTGEKGVFSTRIAYV----VKARGQFLLQIADSDGQNAATALSSTEPII 209 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ ++AY +++ + V + T + NF+ AP +S +G++ + Sbjct: 210 -SPVWSPDGGRLAYVSFEKKKP--VIYVHTLASGQRHIVANFKGSNSAPAWSPDGRKLAV 266 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD IYSV+ + +R+T + I+ YS D I F SDR G Q+Y + ++ Sbjct: 267 VLSKDGNSQIYSVNADGSGLQRITQSSGIDTEPRYSADGGTIYFTSDRGGSPQVYQVGAS 326 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G D KR++ + + P +P G +AF +F + VM Q +++ + + ++ Sbjct: 327 GGDAKRVTFEGSYNV-SPRPAPDGKSLAFISRREGRFQLAVMDLASRQVQVVSDSNKDES 385 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 P+++P+ R ++ + + G L ++ +GR + L +P W + Sbjct: 386 PSFAPNSRMILIATEIGGRG--VLSAVSSDGRIKQRLSVAAGDVREPAWGPY 435 >gi|217969213|ref|YP_002354447.1| translocation protein TolB [Thauera sp. MZ1T] gi|217506540|gb|ACK53551.1| Tol-Pal system beta propeller repeat protein TolB [Thauera sp. MZ1T] Length = 425 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 103/411 (25%), Positives = 187/411 (45%), Gaps = 15/411 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + S + F + L V++VV DL+RS +F LI Sbjct: 26 QLSIEITGTGASRFPVIIPIFENEGRLPQSVTDVVRADLERSGLFTLIDTGPLPMP---E 82 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 P S GA ++TG +I R V FRL+D + ++++ SPA R + Sbjct: 83 SVAPDLAAVRSRGADAVLTGSLIPMADGRYDVRFRLFDAQKQQELGAMSLPMSPAQNRLV 142 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D +Y+ +TG G F +RI +V +S + L + D DG N SR+ I+ Sbjct: 143 GHRIADFVYEKLTGLPGYFATRIAYVIKSGPN----FELQIADADGMNAATALRSREPII 198 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ Q++AY +++ + + + T + + NF+ AP +S +G + + Sbjct: 199 -SPSWSPDGQRLAYVSFEQKKP--IVYVHTLATGQRRVVANFKGSNSAPSWSPDGSQLAV 255 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD +Y++ + RL + I+ + D I F SDR G Q+Y + ++ Sbjct: 256 VLTKDGLSQLYAIGADGSGVRRLAQSSGIDTEPFWGADG-HIYFTSDRGGSPQIYRIPAS 314 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R+S + + P S G L+AF + +F + V Q +L + + ++ Sbjct: 315 GGSAQRVSFEGNYNVT-PRLSFDGKLLAFITRNAGRFQVAVQDVATRQTTILTDSARDES 373 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 P+++P+GR ++++ G L ++ +GR + L A +P W Sbjct: 374 PSFAPNGRMILYATDTGGRG--VLSAVSTDGRIRQRLTVQAADVREPAWGP 422 >gi|319943002|ref|ZP_08017285.1| TolB protein [Lautropia mirabilis ATCC 51599] gi|319743544|gb|EFV95948.1| TolB protein [Lautropia mirabilis ATCC 51599] Length = 425 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 104/435 (23%), Positives = 199/435 (45%), Gaps = 17/435 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 + L ++ F S+ A +++ + V +A F + ++ V+ +D Sbjct: 3 RRAFHLGILASALFMAGSLSAQSMRIDVSGVGARQVPLALAPFNGAGQAPQQLDVVIQED 62 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQRS +F L++ + + +S GA ++ G V RL ++L D Sbjct: 63 LQRSGMFRLVN----LTETLSENSPLDMSALRGQGADSVLVGSVQPVANARLEFRYKLAD 118 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + I + + R H I+D +Y+ +TG KG F++RI FV++ + Sbjct: 119 TVRQSVITEATMTAGESDVRLAGHRIADIVYEKLTGIKGIFSTRIAFVTKQGN----RYR 174 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG N++ + + I+ P +SP+ +++AY +++ + + VY+ D + K Sbjct: 175 LNVADWDGQNVQTALNAGEPII-SPAWSPDGKRLAYVSFETKKPV-VYVHDLASGQ-RKA 231 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISASYSP 311 + F+ AP +S +G+ +++ +D IY V RLT + I+ YSP Sbjct: 232 VAKFKGSNSAPAWSHDGRSLAVTLTRDGGSQIYQVSADGGESARRLTQSSSIDTEPVYSP 291 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D + F SDR G Q+Y M SNG R++ + P SP G +A+ +F Sbjct: 292 DGKFLYFTSDRGGAPQIYRMPSNGGAASRVTFGSSYNV-SPRISPDGQQMAYVTQRNGRF 350 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETL 430 I + E LL + ++P+++P+G+ ++++ + G L ++ +GR + L Sbjct: 351 LIALKDLQSGDETLLTDTGEEESPSFAPNGQWVMYTTRAGGR--EYLMAVSTDGRVKQRL 408 Query: 431 INTPAYASDPQWVGF 445 ++ + +P W + Sbjct: 409 SSSTSSVREPAWGPY 423 >gi|85374728|ref|YP_458790.1| translocation protein TolB [Erythrobacter litoralis HTCC2594] gi|84787811|gb|ABC63993.1| Tol biopolymer transport system [Erythrobacter litoralis HTCC2594] Length = 471 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 142/417 (34%), Positives = 216/417 (51%), Gaps = 17/417 (4%) Query: 42 SANYSPVSIAFTKFV------------SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 N + IA F LG +++ V+S +L+ + +F D + Sbjct: 59 EGNLDDLGIAIPAFATDRDVATPANAQGTGALGAELARVISNNLRNNGLFKPSGPDGLPR 118 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA 149 + P++ W++ GA++LV G V G L V L+D+ R +++ + PA Sbjct: 119 PTFPQITDPQWAVWSNRGAEMLVHGYVRARGDGNLVVGCYLYDMALRDELVRSGWVVPPA 178 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 WR+ AH SD +Y +TGE F+SRI +++E+ L +MD DGAN R++T Sbjct: 179 DWRRAAHKCSDLVYSRLTGESPFFDSRIAYIAETGPKDNRTKRLAIMDSDGANHRFITTG 238 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R PR+SP+ +++ Y +Y D + R+Y+ D R + + + APR+S +G Sbjct: 239 R-ATALTPRYSPDYRRLLYLSYVDGNP-RIYIYDIGTGRQ-QLVTESTNPTFAPRWSPDG 295 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + L S+ + DIY V + + RLT I++ SYSPD SQIVFESDR G +Q+Y Sbjct: 296 RWILYSMAVNGNTDIYRVSAEGGPSVRLTTEPGIDVGGSYSPDGSQIVFESDRSGSQQVY 355 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +M S+G++Q+RIS P WSP+GD IAFT + F I VM +G R L Sbjct: 356 IMNSDGTNQRRISFFG-GRAATPEWSPRGDQIAFT-YIPGDFNIAVMSPNGRNFRKLSNG 413 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +APTW+P+GR + F R + + LY +DL G N +NTP ASDP W + Sbjct: 414 WQDEAPTWAPNGRIIQFFRTERNTGRTALYQVDLTGDNLRRLNTPVDASDPAWGPIL 470 >gi|226194238|ref|ZP_03789837.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei Pakistan 9] gi|225933703|gb|EEH29691.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia pseudomallei Pakistan 9] Length = 421 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 111/431 (25%), Positives = 185/431 (42%), Gaps = 16/431 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 + + HA V V + IA FV+ L +V+ VV DL RS F+ Sbjct: 1 MASCLIAAGGAAHAQVNVLITGVGSTQFPIATANFVNEASLPQQVTSVVRGDLARSGKFS 60 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + S + F W + GA V G V +E + +V F L+D ++ + Sbjct: 61 NVDAGS---TPVPETASVDFGAWKAKGANAFVAGSVNREPNGQYKVNFILYDTVKQQSLG 117 Query: 141 GKKFFSSPAS--WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 G +S + RK H I+D IYQ + G +G FN+R+ +V + L + D Sbjct: 118 GLSLTTSNDNEGMRKTGHKIADYIYQKLLGVRGVFNTRLSYVQRTGN----VYKLLISDS 173 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N S++ I+ P +SP+ KVAY +++ + VY+ D R I N + Sbjct: 174 DGQNAIPALTSKEPII-SPAWSPSGTKVAYVSFELRKPV-VYIHDLPTGRRY-VISNQKG 230 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 AP +S +G+ +++ IYSV RLT + I+ YSPD I F Sbjct: 231 NNSAPAWSPDGQTLAVALSLTGNTQIYSVSSTGTGLRRLTRSSSIDTEPFYSPDGKWIYF 290 Query: 319 ESDREGKEQLYVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 SDR G Q+Y M + G +R++ + P SP G L+A+ +G F + V Sbjct: 291 TSDRGGAPQIYRMPAEGESAGAAQRVTFTGSYN-TSPRVSPDGKLLAYISRTGGGFKLYV 349 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + ++P+++ +G+ ++++ + G + D + + L Sbjct: 350 QDLQSGAANAVTNTTRDESPSFAANGQYILYATQSGGRSVLAAVPSDGSAPPQILSVQGG 409 Query: 436 YASDPQWVGFM 446 +P W FM Sbjct: 410 AIREPSWGPFM 420 >gi|329893685|ref|ZP_08269819.1| tolB protein precursor [gamma proteobacterium IMCC3088] gi|328923612|gb|EGG30924.1| tolB protein precursor [gamma proteobacterium IMCC3088] Length = 433 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 104/437 (23%), Positives = 201/437 (45%), Gaps = 11/437 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSP--VSIAFTKFVSIDELGGKVSEVVS 70 MK ++V + F A + + +P ++I+ + V+ V+ Sbjct: 1 MKAFFLSVVVSVATFLSPVARAELVIEITQGIDNPTVIAISPFAWEGPGVAPEDVAFVIQ 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F +++++ + D F+DW + AQ L+ GR+ G+ L +F L Sbjct: 61 NDLYRSGQFAPVARENMLGTPSR-DEDIFFRDWRMVNAQYLLIGRLS--GEQTLTADFAL 117 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV + +I + R +AH I+D +Y ++TG G F +++L+V+ + + G Sbjct: 118 YDVNKQTLVIQGSEQAVRGEVRTLAHRIADRVYTALTGIPGAFATKLLYVAVTPIPGEKD 177 Query: 191 N-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DGA R L SR+ I P +SP+ ++AY +++ ++ + + A Sbjct: 178 YYELTLADSDGARPRVLLASREPI-LAPTWSPDATEIAYVSFETSRPA-IFRQNLQTG-A 234 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ FR + +P +S +GKR + + KD DIY +DL++ A ER+T I+ ++ Sbjct: 235 REQLTAFRGLNGSPSWSPDGKRMAMVLSKDGNPDIYVLDLETYALERITRHYDIDTEPTW 294 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD ++F SDR G+ Q+Y R++ + + V + G + Sbjct: 295 MPDGKSLLFTSDRPGRPQIYRYDFVTGLTDRVTYEGSYNARARV-AQDGRNVVLVHQQDG 353 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + I V+ + + L ++P+ +P+G ++++ K+ G S+D G Sbjct: 354 DYKIAVLDLETRRLTALTSTDLDESPSIAPNGSMVLYATKQAGRGILAAVSVDG-GARFN 412 Query: 430 LINTPAYASDPQWVGFM 446 L +P W ++ Sbjct: 413 LPARDGEVREPSWSPYL 429 >gi|146283138|ref|YP_001173291.1| translocation protein TolB [Pseudomonas stutzeri A1501] gi|145571343|gb|ABP80449.1| TolB protein [Pseudomonas stutzeri A1501] Length = 384 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 102/391 (26%), Positives = 190/391 (48%), Gaps = 12/391 (3%) Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 L ++E++ D++ + +F I + + T I ++DW +LGAQ ++ G + G Sbjct: 2 LPEDMAEIIGNDMRNTGIFQPIPRQNMISMPTRGSEII-YRDWKALGAQYVMVGNIEPAG 60 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 RL+ + +++V +Q++ SP R +AH +D ++ +TG KG F++R+L+V Sbjct: 61 -GRLQARYEVFNVTTEQQVMSGTVGGSPDQLRDMAHHAADQSFEKLTGIKGAFSTRLLYV 119 Query: 181 SESVVSG-IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + G + +L D DGA L SR+ I PR+SP+ +++AY +++ + R+ Sbjct: 120 TAERMGGANTRYTLQRSDYDGARAVTLLQSREPI-LSPRYSPDGRRIAYVSFEQKRP-RI 177 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 ++ R ++I NF + AP FS +G R + KD +IY +DL S +RLTN Sbjct: 178 FVQHIDTGR-REQITNFEGLNGAPAFSPDGNRLAFVLSKDGNPEIYVMDLGSRQLQRLTN 236 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 I+ + D I + SDR GK Q+Y + + +R++ + +P S Sbjct: 237 HYAIDTEPFWGADGQTIYYTSDRAGKPQVYKQRLGSNSAERVTFVGNYNA-NPKLSADEK 295 Query: 360 LIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 + F + R+L + S ++PT +P+G LI++ ++ G Sbjct: 296 TLVMIHRQDGYTNFKVAAQDLQRGNLRILSDTSLDESPTVAPNGTMLIYATRQQGRG--V 353 Query: 418 LYSIDLNGRNETLINTP-AYASDPQWVGFMD 447 L + +NGR + T +P W +++ Sbjct: 354 LMLVSINGRVRLPLPTAQGEVREPSWSPYLN 384 >gi|330991878|ref|ZP_08315827.1| Protein tolB [Gluconacetobacter sp. SXCC-1] gi|329760899|gb|EGG77394.1| Protein tolB [Gluconacetobacter sp. SXCC-1] Length = 456 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 159/449 (35%), Positives = 244/449 (54%), Gaps = 22/449 (4%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 S R F+ + L + G ++ + A +P+ I S + Sbjct: 23 SRRGFM--GAGVAGGLMATPLFTAGAAHAQAAGEAEITVDQARTAPIPIVLPSLGSG--V 78 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 +V++V+S DL +F IS P P F + S+GA+ VTG+V+++G Sbjct: 79 AQQVTDVISADLGNCGLFRPISASM-------PQGTPDFASYKSMGARAAVTGKVVEQGS 131 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 LRVEFRLWDV KQI G + ++ WR+IAH I+D IY + GE+G FN+RI +++ Sbjct: 132 -SLRVEFRLWDVLVGKQIQGTAYTAAAQDWRRIAHVIADVIYNRMLGEQGYFNTRIAYIA 190 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S L +MD+DGA+ RYLT + + PRF+P ++A+ +Y + RVYL Sbjct: 191 RSGPRAHQTTRLAIMDQDGADSRYLTNGQ-WLTLTPRFNPANSELAFMSYANYRP-RVYL 248 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + + +G+F + APRF+ +G+ ++SV + DIY VDL + + +LT + Sbjct: 249 FNLNTGQQ-RLLGDFSGISFAPRFAPDGRSVILSVTRGGGSDIYLVDLANMSRRQLTASG 307 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ S S+SPD SQIVF SDR G QLY+M ++G D KRIS Y PVWSP+GDLI Sbjct: 308 AIDTSPSFSPDGSQIVFNSDRGGSPQLYIMSASGGDAKRISY-GHGQYGSPVWSPRGDLI 366 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK---- 417 AF++ + F++GVM DG+ ER+L + +++P + P+GR L F R+ +G Sbjct: 367 AFSRIANGSFSLGVMAPDGTGERILTQGFTVESPAFCPNGRVLAFCRQSAAGSGGAGFAT 426 Query: 418 -LYSIDLNGRNETLINTPAYASDPQWVGF 445 + +ID+ G +E + ASDP W Sbjct: 427 GISTIDITGFHERALP-AGSASDPTWSPL 454 >gi|294341055|emb|CAZ89450.1| putative Protein tolB precursor [Thiomonas sp. 3As] Length = 438 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 203/445 (45%), Gaps = 13/445 (2%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M R F+ L+ + + S A KV + + + + F ++ Sbjct: 1 MQRRRFVLGSLSAPLVRGAASFVGLATLANSAQAQFKVDVSGIGATQIPVGIGAFRDLNH 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 ++++V DL RS +F + + + P + W S + + G V + Sbjct: 61 CPQPIADIVRADLTRSGLFAV---SNLGGQTLTEQGPPNYAAWRSQNLEAVAGGSVAQVT 117 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 R +V+FRLWD + + G P R AH ISD IYQ +TG++G F +RI ++ Sbjct: 118 GGRWQVQFRLWDAVKQADLGGLALTVMPGDLRLAAHKISDYIYQKLTGQRGVFATRITYI 177 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ +G SL + D DGAN ++ SR+ L P +SPN Q++AY +++ + V+ Sbjct: 178 TK---AGQHNFSLNIADSDGANPQFALRSREP-LLSPVWSPNGQELAYVSFETGKPV-VF 232 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D R A + + NF+ AP FS +G + + IY + + +L + Sbjct: 233 MQDVRSG-ARRAVANFKGSNSAPAFSPDGGTLAVVLTLTGRSQIYLMPSKGGTPRQLMRS 291 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ++SPD + F SDR+G Q+Y + NG +RI+ + P SP G Sbjct: 292 YSIDTEPTFSPDGQSLYFVSDRDGGPQVYKVGLNGGSVQRITYSGGYNV-SPAISPDGKT 350 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A+ G + + + + +LL + S+ P+++P+G+ +++S G G L + Sbjct: 351 LAYISQQGNSYQLWSINLATNATQLLDDGSDCGHPSFAPNGQIVLYSA--GGRGGEVLKT 408 Query: 421 IDLNGR-NETLINTPAYASDPQWVG 444 + ++GR TL +P W Sbjct: 409 VSIDGRVRSTLSQAGVQVREPSWGP 433 >gi|262375578|ref|ZP_06068811.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter lwoffii SH145] gi|262309832|gb|EEY90962.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter lwoffii SH145] Length = 427 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 110/436 (25%), Positives = 199/436 (45%), Gaps = 16/436 (3%) Query: 12 NMKINLCLLLVL-IGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 K LCL ++ +G T A + + A + IA F + VV Sbjct: 4 TRKHLLCLAIMTTLGAVTATQSQAQLHLEITKAPEAAPKIAIVPFSQD----QSIYPVVE 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL RS F S++ T + P + W + G +VTG ++++L Sbjct: 60 NDLNRSGKFASASKNL---PATAQLNSPNAEAWAAAGVPYVVTGSSKTNPDGSYSIQYQL 116 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV+ R+ ++ + + R+ AH ISD IYQ++TG GDF RI +V + + + Sbjct: 117 YDVEKRQYLLNELLTVPASRTRQAAHMISDAIYQALTGIPGDFTGRIAYVLRNPATPERR 176 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L + D DG + + SRD I P ++P+ +K+AY +++ + +Y+ D + Sbjct: 177 YTLQIADTDGEQPKTILTSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYVQDLATGQ-R 233 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +++ +FR + AP FS +GK L + +IY ++L++ +R+TN I+ A Y+ Sbjct: 234 EKLASFRGLNGAPSFSPDGKSMLFTASMHGNPEIYQMNLETRQLKRMTNDSAIDTEARYA 293 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGE 369 PD +F SDR G Q+Y N KR++ + S G +A SG Sbjct: 294 PDGKSFIFTSDRGGSPQIYRYDFNNESTKRLTFRGAFNARA-TLSADGKKLALVHRPSGS 352 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 + + V +L S ++P++SP+G+ ++++ ++ + + L+GR Sbjct: 353 NYKVAVQDISSGVTNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSLDGRFRM 410 Query: 429 TLINTPAYASDPQWVG 444 L + +P W Sbjct: 411 NLPSETGEVREPAWAP 426 >gi|296136886|ref|YP_003644128.1| Tol-Pal system beta propeller repeat protein TolB [Thiomonas intermedia K12] gi|295797008|gb|ADG31798.1| Tol-Pal system beta propeller repeat protein TolB [Thiomonas intermedia K12] Length = 438 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 203/445 (45%), Gaps = 13/445 (2%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 M R F+ L+ + + S A KV + + + + F ++ Sbjct: 1 MQRRRFVLGSLSAPLVRGAASFVGLTALANSAQAQFKVDVSGIGATQIPVGIGAFRDLNH 60 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG 120 ++++V DL RS +F + + + P + W S + + G V + Sbjct: 61 CPQPIADIVRADLTRSGLFAV---SNLGGQTLTEQGPPNYAAWRSQNLEAVAGGSVAQVT 117 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 R +V+FRLWD + + G P R AH ISD IYQ +TG++G F +RI ++ Sbjct: 118 GGRWQVQFRLWDAVKQADLGGLALTVMPGDLRLAAHKISDYIYQKLTGQRGVFATRITYI 177 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ +G SL + D DGAN ++ SR+ L P +SPN Q++AY +++ + V+ Sbjct: 178 TK---AGQHNFSLNIADSDGANPQFALRSREP-LLSPVWSPNGQELAYVSFETGKPV-VF 232 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + D R A + + NF+ AP FS +G + + IY + + +L + Sbjct: 233 MQDVRSG-ARRAVANFKGSNSAPAFSPDGGTLAVVLTLTGRSQIYLMPSKGGTPRQLMRS 291 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 I+ ++SPD + F SDR+G Q+Y + NG +RI+ + P SP G Sbjct: 292 YSIDTEPTFSPDGQSLYFVSDRDGGPQVYKVGLNGGSVQRITYSGGYNV-SPAISPDGKT 350 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A+ G + + + + +LL + S+ P+++P+G+ +++S G G L + Sbjct: 351 LAYISQQGNSYQLWSINLATNATQLLDDGSDCGHPSFAPNGQIVLYSA--GGRGGEVLKT 408 Query: 421 IDLNGR-NETLINTPAYASDPQWVG 444 + ++GR TL +P W Sbjct: 409 VSIDGRVRSTLSQAGVQVREPSWGP 433 >gi|10120890|pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein Length = 403 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 92/411 (22%), Positives = 180/411 (43%), Gaps = 11/411 (2%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP 98 + + P+ + ++ + +V+ DL+ S FN + + Q+ + + Sbjct: 1 DSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEV- 59 Query: 99 RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAH 156 + W++LG +V G+V V ++L D + + + R H Sbjct: 60 QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGH 119 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 T SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Q L Sbjct: 120 TASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLXS 177 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G + ++ Sbjct: 178 PAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFAL 235 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 K ++++Y DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + NG Sbjct: 236 SKTGSLNLYVXDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 295 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 +RI+ + + D S G +G + I ++L + P+ Sbjct: 296 APQRITWEGSQNQ-DADVSSDGKFXVXVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPS 354 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +P+G +I+S + + L + +GR + L T P W ++ Sbjct: 355 LAPNGTXVIYSSSQGXGSVLNL--VSTDGRFKARLPATDGQVKFPAWSPYL 403 >gi|118574577|sp|Q478F2|TOLB_DECAR RecName: Full=Protein tolB; Flags: Precursor Length = 426 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 100/412 (24%), Positives = 190/412 (46%), Gaps = 14/412 (3%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + A + + + F V+ V DL+RS +F L+ + + Sbjct: 26 QLSIEITGAGANRIPVTIVDFPGDPTAARVVTATVRADLERSGLFKLVDNGTA---AFDE 82 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 ++ +W GA L G + + R+ FRL+D + + G + ++ + R Sbjct: 83 NAPVNHAEWKGKGADALAAGSIARSTDGRMEARFRLYDTQKGVSLGGAAYVTNNSQLRAA 142 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H I+D IY+ +TGEKG F++RI +V V + L + D DG N S + I+ Sbjct: 143 GHRIADFIYEKLTGEKGVFSTRIAYV----VKARGQFLLQIADSDGQNAATALSSTEPII 198 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ ++AY +++ + V + T + NF+ AP +S +G++ + Sbjct: 199 -SPVWSPDGGRLAYVSFEKKKP--VIYVHTLASGQRHIVANFKGSNSAPAWSPDGRKLAV 255 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD IYSV+ + +R+T + I+ YS D I F SDR G Q+Y + ++ Sbjct: 256 VLSKDGNSQIYSVNADGSGLQRITQSSGIDTEPRYSADGGTIYFTSDRGGSPQVYQVGAS 315 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G D KR++ + + P +P G +AF +F + VM Q +++ + + ++ Sbjct: 316 GGDAKRVTFEGSYNV-SPRPAPDGKSLAFISRREGRFQLAVMDLASRQVQVVSDSNKDES 374 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGF 445 P+++P+ R ++ + + G L ++ +GR + L +P W + Sbjct: 375 PSFAPNSRMILIATEIGGRG--VLSAVSSDGRIKQRLSVAAGDVREPAWGPY 424 >gi|262368607|ref|ZP_06061936.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter johnsonii SH046] gi|262316285|gb|EEY97323.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter johnsonii SH046] Length = 427 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 113/439 (25%), Positives = 201/439 (45%), Gaps = 18/439 (4%) Query: 11 LNMKINLCLLLVLIGGFFP---TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 + M L L ++ F P T HA + + A IA F + L Sbjct: 1 MEMTRKHLLSLAILTAFSPVLVTQAHAQLHLEIAKAPEEAPKIAIVPFSNDSSL----YP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 ++ DL RS F S++ T + P +W + G +VTG V V Sbjct: 57 IIETDLNRSGKFTSASKNL---PATASMNNPNAANWQAAGVPYVVTGTVKTTENGSYEVH 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ ++ ++ + + R AH ISD IYQ++TG GDF+ RI +V + + Sbjct: 114 YQLYDVQKQQYLLNELLTVPASRVRSAAHMISDAIYQALTGIPGDFSGRIAYVLRNPATP 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG R + SRD I P ++P+ +K+AY +++ + +Y+ D Sbjct: 174 EQRYTLQIADTDGEQPRTILTSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYVQDLSTG 231 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A +++ +FR + AP FS +GK L + +IY ++L++ +R+TN I+ A Sbjct: 232 -AREKLASFRGLNGAPSFSPDGKSMLFTASMHGNPEIYQMNLETRQLQRMTNDSAIDTEA 290 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 Y+PD +F SDR G Q+Y S R++ A S G +A Sbjct: 291 RYAPDGKSFIFTSDRGGSAQIYRYDLANSSYNRLTFRG-AFNARGTLSADGKKLALVHRP 349 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 SG + + + + S +L S ++P++SP+G+ ++++ ++ + + L+GR Sbjct: 350 SGSNYKVAIQDLNSSVTNILTPTSLDESPSFSPNGQMVVYATREGSRGLLSI--MSLDGR 407 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 408 FRMNLPSEQGEVREPAWAP 426 >gi|222474900|ref|YP_002563315.1| TOLB protein precursor (tolB) [Anaplasma marginale str. Florida] gi|255002872|ref|ZP_05277836.1| translocation protein TolB [Anaplasma marginale str. Puerto Rico] gi|222419036|gb|ACM49059.1| TOLB protein precursor (tolB) [Anaplasma marginale str. Florida] Length = 441 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 22/453 (4%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 FF A L I+L LL G A + V N V I+ S L Sbjct: 1 MRIFFFAYVLPTVISL--LLGCQGAV------AALGVDITKGNTEKVKISVAPMHSSTNL 52 Query: 62 GGKVS----EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 ++ V+ +DL + +F+ + T + +P W S+ VLVTG + Sbjct: 53 EKEIGKSCIRVMLRDLNSTGIFDASWKLPAGGFGTTSEGMPDSNAWTSVAKDVLVTGSIK 112 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 + + R++V+ +WDV +Q+ GK F + +WR+ AH++SD IY ITGE G FN+RI Sbjct: 113 EFAQGRVKVKLFIWDVASGRQLSGKSFNFATGNWRRAAHSMSDSIYSRITGEGGYFNTRI 172 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 +V+E+ + G + + +MD+DGAN Y+T R + + PRFSP+ + + Y +Y + Sbjct: 173 AYVAETGLPGSRR--IAIMDQDGANNIYIT-GRGEFVSTPRFSPDARNLVYMSY-AKSGG 228 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V L D +G R + +PRFS +G+ L+S + +IYS+DL+S + RL Sbjct: 229 SVVLHDLETG-YSTALGGVRGVNSSPRFSPDGRHVLLSESAQGSTNIYSIDLKSGKSTRL 287 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN IN SASYSPD IVF SDR G+ QLYVM ++G++Q+RIS K Y P WSP+ Sbjct: 288 TNDRSINTSASYSPDKKSIVFNSDRSGRPQLYVMNADGTNQRRISSGK-GGYSAPAWSPR 346 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-- 415 GD IAFTK G+ F +GVMK DGS ERLL + + +P+WSP+GR ++F+++ Sbjct: 347 GDWIAFTKTEGKSFHVGVMKPDGSGERLLAKGYMVDSPSWSPNGRVILFTQQDPPSATHP 406 Query: 416 --SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 S+L ++D+ G N +++ P AS+ W + Sbjct: 407 FRSRLVTVDITGTNTQILDVPTNASNAHWSPVL 439 >gi|209364240|ref|YP_001425326.2| TolB [Coxiella burnetii Dugway 5J108-111] gi|212213381|ref|YP_002304317.1| TolB [Coxiella burnetii CbuG_Q212] gi|215918884|ref|NP_819142.2| TolB [Coxiella burnetii RSA 493] gi|206583769|gb|AAO89656.2| TolB [Coxiella burnetii RSA 493] gi|207082173|gb|ABS77388.2| TolB [Coxiella burnetii Dugway 5J108-111] gi|212011791|gb|ACJ19172.1| TolB [Coxiella burnetii CbuG_Q212] Length = 440 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 183/426 (42%), Gaps = 14/426 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQ 84 F + + + + + IA F L + +V+ DLQ S F + Sbjct: 20 FVPVSYGALDLELTKGVTAAIPIAIMPFAGPSVLAPGDETIPQVIKNDLQNSGQFRVTGS 79 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKK 143 + Q + + I + W LV G + G R RV F L +V +++ + Sbjct: 80 GNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRYRVAFTLINVFDSNNRLLSES 138 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGA 201 F + R +AH ISD IYQ +TG +G F+++I +V S + K +L V D DG Sbjct: 139 FNVNAKELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGF 198 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + L S D + P +SP+ K+AY +++ +YL D R +R+ + Sbjct: 199 NPQPLLVS-DMPIMSPTWSPDGNKIAYVSFE-GHRAAIYLQDLATGR-RQRLSEAPGING 255 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +GK+ + + K IY ++L +T I+ ++SPD ++F S+ Sbjct: 256 APAFSPDGKQLALVLTKTGNPKIYILNLADGHLREITKGWSIDTEPAWSPDGKSLLFTSN 315 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R+G Q+Y R++ + + P + P G I F I Sbjct: 316 RDGTPQIYNYSFADGSINRVTYRGDYNAR-PSFMPDGKSIIMMHRENGLFGIARQDLSTG 374 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 Q ++L E ++P+ +P+G+ I++ + G L + ++G+ + L +P Sbjct: 375 QVQILSESGTDESPSLAPNGKMAIYAMEYGGRG--VLAQVSIDGQIKLRLPARNGNVQEP 432 Query: 441 QWVGFM 446 W ++ Sbjct: 433 AWSPYL 438 >gi|161831311|ref|YP_001596058.1| TolB protein [Coxiella burnetii RSA 331] gi|32699692|sp|Q83F59|TOLB_COXBU RecName: Full=Protein tolB; Flags: Precursor gi|161763178|gb|ABX78820.1| TolB protein [Coxiella burnetii RSA 331] Length = 437 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 183/426 (42%), Gaps = 14/426 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQ 84 F + + + + + IA F L + +V+ DLQ S F + Sbjct: 17 FVPVSYGALDLELTKGVTAAIPIAIMPFAGPSVLAPGDETIPQVIKNDLQNSGQFRVTGS 76 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKK 143 + Q + + I + W LV G + G R RV F L +V +++ + Sbjct: 77 GNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRYRVAFTLINVFDSNNRLLSES 135 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGA 201 F + R +AH ISD IYQ +TG +G F+++I +V S + K +L V D DG Sbjct: 136 FNVNAKELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGF 195 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + L S D + P +SP+ K+AY +++ +YL D R +R+ + Sbjct: 196 NPQPLLVS-DMPIMSPTWSPDGNKIAYVSFE-GHRAAIYLQDLATGR-RQRLSEAPGING 252 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +GK+ + + K IY ++L +T I+ ++SPD ++F S+ Sbjct: 253 APAFSPDGKQLALVLTKTGNPKIYILNLADGHLREITKGWSIDTEPAWSPDGKSLLFTSN 312 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R+G Q+Y R++ + + P + P G I F I Sbjct: 313 RDGTPQIYNYSFADGSINRVTYRGDYNAR-PSFMPDGKSIIMMHRENGLFGIARQDLSTG 371 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 Q ++L E ++P+ +P+G+ I++ + G L + ++G+ + L +P Sbjct: 372 QVQILSESGTDESPSLAPNGKMAIYAMEYGGRG--VLAQVSIDGQIKLRLPARNGNVQEP 429 Query: 441 QWVGFM 446 W ++ Sbjct: 430 AWSPYL 435 >gi|302879781|ref|YP_003848345.1| Tol-Pal system beta propeller repeat protein TolB [Gallionella capsiferriformans ES-2] gi|302582570|gb|ADL56581.1| Tol-Pal system beta propeller repeat protein TolB [Gallionella capsiferriformans ES-2] Length = 422 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 104/416 (25%), Positives = 188/416 (45%), Gaps = 14/416 (3%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 A + + A + ++ +L +++EVVS DL R+ +F L+ K Sbjct: 20 ASAALNIEIIGAGEHQIPVSLVPMGGDAKLAQEINEVVSGDLLRTGLFRLVDTTG---KA 76 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 + + + DW GA+ L G V + R+ FRL DV +++G+ Sbjct: 77 PHEPAEVNYTDWQLRGAEALAIGTVSLQASGRIEARFRLLDVLKHVELVGQAVSVGNGQV 136 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R + H I+D IY+ +TG G F++RI +V+ S L V D DG N + + + Sbjct: 137 RAVGHRIADLIYEKLTGNPGVFSTRIAYVNRQGRS----FRLIVADSDGYNEQIVLKQNE 192 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I P +SP+ +AY +++ + + K + ++R AP +S +G++ Sbjct: 193 PI-MSPSWSPDGSHLAYVSFETGHA--AVFVQSLYTNLRKVVADYRGSNSAPAWSPDGRQ 249 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + +D IY + + R++ + I+ ++SPD ++F SDR G Q+Y M Sbjct: 250 LAVVLTRDGGSQIYLMRPDGSELRRISFSGGIDTEPNFSPDGLSLLFTSDRGGSAQVYRM 309 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 G +R++ S F P +SP G FT SG +F I V Q L E Sbjct: 310 PVEGGGAQRMTFAS-GSCFSPRYSPDGKSFVFTHLSGGRFYISVQDFQTGQAEALTEGGW 368 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVGFM 446 + P+++P+G+ ++F+ + G L ++ +GR + + A +P W + Sbjct: 369 EKKPSYAPNGKLILFASEARGRGI--LATVSSDGRVKQHMFTQSGDAREPVWGPNL 422 >gi|315634713|ref|ZP_07889997.1| tol-Pal system beta propeller repeat protein TolB [Aggregatibacter segnis ATCC 33393] gi|315476661|gb|EFU67409.1| tol-Pal system beta propeller repeat protein TolB [Aggregatibacter segnis ATCC 33393] Length = 426 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 99/441 (22%), Positives = 187/441 (42%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + I + L +++ G A V++ + + P+++ K+ ++++ Sbjct: 1 MKRVIRVFSLFIMLLGLTSL-ARAEVRIVIDEVMDSARPIAVVPFKWNGPGSAPADIADI 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S FN +S Q+ T + W++LG + ++ G+V + + Sbjct: 60 IASDLRNSGKFNPLSVSKMPQQPTTAAEV-NPSAWSALGIEAVIVGQVTP-SNGGFDIAY 117 Query: 129 RLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + ++ + R AHT+SD+ ++ +TG +G F +RI +V + Sbjct: 118 QLVDTMGSAGSILSQNQYTVTQKWVRYGAHTVSDETFEKLTGIRGAFRTRIAYVVQKN-G 176 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + V D DG N +++ Q P +SP+ +K+AY +++++ + + Sbjct: 177 GSQPYEVRVADYDGFN-QFIINKSSQPFMSPAWSPDGKKLAYVSFENKKAQII--LQDLS 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A K I +F AP FS +G R + KD ++IY ++L S +LT+ N Sbjct: 234 SMARKVIASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVINLGSGQVSQLTSGSGNNTE 293 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD IVF SDR G Q+Y M ++G + S G + Sbjct: 294 PSWSPDGQSIVFTSDRGGSPQVYRMSASGGGASLV-----GGRGSGQISSDGSTLVMI-- 346 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I +L ++P+ SP+G +I+S + G L + +GR Sbjct: 347 -DGSNNIVKQDLVSGGSEVLSSTFLDESPSISPNGIMIIYSSTQG--LGKVLQLVSTDGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKARLPGNDGQVKFPAWSPYL 424 >gi|56416532|ref|YP_153606.1| translocation protein TolB [Anaplasma marginale str. St. Maries] gi|254994752|ref|ZP_05276942.1| translocation protein TolB [Anaplasma marginale str. Mississippi] gi|255004004|ref|ZP_05278805.1| translocation protein TolB [Anaplasma marginale str. Virginia] gi|67461908|sp|Q5PBH8|TOLB_ANAMM RecName: Full=Protein tolB; Flags: Precursor gi|56387764|gb|AAV86351.1| TolB protein precursor [Anaplasma marginale str. St. Maries] Length = 441 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 157/445 (35%), Positives = 244/445 (54%), Gaps = 15/445 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTS-IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS--- 66 + + +L +I A + V N V I+ S L ++ Sbjct: 1 MRIFFFAYVLPTVISLLLGCQGAIAALGVDITKGNTEKVKISVAPMHSSTNLEKEIGKSC 60 Query: 67 -EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 V+ +DL + +F+ + T + +P W S+ VLVTG + + + R++ Sbjct: 61 IRVMLRDLNSTGIFDASWKLPAGGFSTTSEGMPDSNAWTSVAKDVLVTGSIKEFAQGRVK 120 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V+ +WDV +Q+ GK F + +WR+ AH++SD IY ITGE G FN+RI +V+E+ + Sbjct: 121 VKLFIWDVASGRQLSGKSFNFATGNWRRAAHSMSDSIYSRITGEGGYFNTRIAYVAETGL 180 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G + + +MD+DGAN Y+T R + + PRFSP+ + + Y +Y + V L D Sbjct: 181 PGSRR--IAIMDQDGANNIYIT-GRGEFVSTPRFSPDARNLVYMSY-AKSGGSVVLHDLE 236 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +G R + +PRFS +G+ L+S + +IYS+DL+S + RLTN IN Sbjct: 237 TG-YSTALGGVRGVNSSPRFSPDGRHVLLSESAQGSTNIYSIDLKSGKSTRLTNDRSINT 295 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SASYSPD IVF SDR G+ QLYVM ++G++Q+RIS K Y P WSP+GD IAFTK Sbjct: 296 SASYSPDKKSIVFNSDRSGRPQLYVMNADGTNQRRISSGK-GGYSAPAWSPRGDWIAFTK 354 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG----SKLYSI 421 G+ F +GVMK DGS ERLL + + +P+WSP+GR ++F+++ S+L ++ Sbjct: 355 TEGKSFHVGVMKPDGSGERLLAKGYMVDSPSWSPNGRVILFTQQDPPSATHPFRSRLVTV 414 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 D+ G N +++ P AS+ W + Sbjct: 415 DITGTNTQILDVPTNASNAHWSPVL 439 >gi|224826140|ref|ZP_03699243.1| Tol-Pal system beta propeller repeat protein TolB [Lutiella nitroferrum 2002] gi|224601777|gb|EEG07957.1| Tol-Pal system beta propeller repeat protein TolB [Lutiella nitroferrum 2002] Length = 428 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 110/412 (26%), Positives = 200/412 (48%), Gaps = 14/412 (3%) Query: 36 VKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + + + +IA F + ++ ++ ++ DL + F ++ S P Sbjct: 26 MTIEIVGGGANRHAIAVLPFQNETTQVREALTPIIRNDLLLTGAFRMVDPASAANPAFEP 85 Query: 95 DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKI 154 I + W GAQ L G+V G ++++ FRL+D +KQ+ +F +P R++ Sbjct: 86 AQI-NYPAWRGAGAQSLAIGKVEAAG-GQVKISFRLFDAAQQKQLTSGEFTVTPERSREV 143 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AHTI+D IY++ITG+KG FN+RI +V +S L V D DG + + S++ I+ Sbjct: 144 AHTIADMIYEAITGQKGIFNTRISYVLKSG----RDYLLQVADMDGRGAQTILRSKEPII 199 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ K+AY +++ + V + + + + NF+ AP +S +G++ + Sbjct: 200 -SPAWSPDGGKIAYVSFEAKKP--VVWVQNLVTGQRRIVANFKGSNSAPAWSPDGRQLAV 256 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + IY +D R+T++ I+ ++SPD SQ+ F SDR G Q+YV Sbjct: 257 VLTTSGTSQIYVIDANGGGARRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGPQIYVQPVA 316 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +R+S D + P SP G +++ + G +F + V R+L + + Sbjct: 317 GGSARRLSWDGSYNV-SPKVSPDGRTLSYIRRQGGQFRVVVQDLASGDNRVLSSGAYNER 375 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGF 445 P+++P+ R ++F+ + G S LY+ +G ++ L DP W F Sbjct: 376 PSFAPNSRMVLFASDEGGR--SVLYAATPDGSSKVRLAVINGDVQDPAWGPF 425 >gi|301155738|emb|CBW15206.1| periplasmic protein [Haemophilus parainfluenzae T3T1] Length = 427 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 181/440 (41%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + L +V+ V++ + IA F + ++V+ D Sbjct: 4 IKRVMGLFVVMFAFASTAMAEDEVRIVIDEGVDGARPIAVVPFAG--SAPENIGQIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I Q+ T + + + W +LG +V G+V G + ++L D Sbjct: 62 LRNSGKFNPIPVSQMPQQPTTAAEV-KPEAWTALGIDAVVVGQVTSTGSG-YNISYQLVD 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 + + + R AHT+SD++++ +TG +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLAQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ +++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSSQPIMSPAWSPDGKRLAYVSFENKKSQLV--VQDLGS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + K + +F AP FS +G + + +D ++IY + +LT+ N Sbjct: 236 GSRKVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVMSSNGGKPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD S I+F SDR G Q+Y M ++G + S G + Sbjct: 296 SWSPDGSSILFTSDRSGSPQVYRMSASGGGASPV-----GGRGSAQISSDGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGSSEVLSTSFLGESPSISPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSNGQVKFPAWSPYL 425 >gi|52424778|ref|YP_087915.1| translocation protein TolB [Mannheimia succiniciproducens MBEL55E] gi|67461939|sp|Q65UN0|TOLB_MANSM RecName: Full=Protein tolB; Flags: Precursor gi|52306830|gb|AAU37330.1| TolB protein [Mannheimia succiniciproducens MBEL55E] Length = 431 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 102/441 (23%), Positives = 181/441 (41%), Gaps = 22/441 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 + L VL V++ + IA F + + ++E+V+ D Sbjct: 5 LTRMLSAFAVLFFAISTAQADDEVRIVIDEGVDGARPIAVVPFKTNGSVPADIAEIVTAD 64 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I Q+ + + W +LG +V G+V G + ++L D Sbjct: 65 LRNSGKFNPIPVSQMPQQPASASEV-TPDAWAALGVDAIVVGQVTATGNG-YNIAYQLVD 122 Query: 133 VKDR----KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + A W R AHT+SD++++ +T KG F +RI +V + G Sbjct: 123 TVGASGGAGAVLAQNSVTVGAKWIRYGAHTVSDEVFEKLTAIKGAFRTRIAYVVQKN-GG 181 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ +++AY ++++ V + Sbjct: 182 SKPYEIRVADYDGFN-QFIVNRSSQPIMSPAWSPDGKRLAYVSFENRKSQLV--VQDLGS 238 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + K+ ++IY + +LT+ N Sbjct: 239 GARKVVASFQGHNGAPAFSPDGSRLAFASNKEGQLNIYVMGANGGQPTQLTSGSGNNTEP 298 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD S I+F SDR G Q+Y M S+G + S G + Sbjct: 299 SWSPDGSSILFTSDRGGSPQVYRMSSSGGAASPV-----GGRGSAQISSDGKTLVMI--- 350 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 351 NGNNNVVKQDVTSGASEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 408 Query: 428 E-TLINTPAYASDPQWVGFMD 447 + L T P W ++D Sbjct: 409 KARLPGTDGQVKFPAWSPYLD 429 >gi|165918421|ref|ZP_02218507.1| TolB protein [Coxiella burnetii RSA 334] gi|165917927|gb|EDR36531.1| TolB protein [Coxiella burnetii RSA 334] Length = 437 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 181/426 (42%), Gaps = 14/426 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQ 84 F + + + + + IA F L + +V+ DLQ S F + Sbjct: 17 FVPVSYGALDLELTKGVTAAIPIAIMPFAGPSVLAPGDETIPQVIKNDLQNSGQFRVTGS 76 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKK 143 + Q + + I + W LV G + G R RV F L +V +++ + Sbjct: 77 GNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRYRVAFTLINVFDSNNRLLSES 135 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGA 201 F R AH ISD IYQ +TG +G F+++I +V S + K +L V D DG Sbjct: 136 FNVDAKELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGF 195 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + L S D + P +SP+ K+AY +++ +YL D R +R+ + Sbjct: 196 NPQPLLVS-DMPIMSPTWSPDGNKIAYVSFE-GHRAAIYLQDLATGR-RQRLSEAPGING 252 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS +GK+ + + K IY ++L +T I+ ++SPD ++F S+ Sbjct: 253 APAFSPDGKQLALVLTKTGNPKIYILNLADGHLREITKGWSIDTEPAWSPDGKSLLFTSN 312 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R+G Q+Y R++ + + P + P G I F I Sbjct: 313 RDGTPQIYNYSFADGSINRVTYRGDYNAR-PSFMPDGKSIIMMHRENGLFGIARQDLSTG 371 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 Q ++L E ++P+ +P+G+ I++ + G L + ++G+ + L +P Sbjct: 372 QVQILSESGTDESPSLAPNGKMAIYAMEYGGRG--VLAQVSIDGQIKLRLPARNGNVQEP 429 Query: 441 QWVGFM 446 W ++ Sbjct: 430 AWSPYL 435 >gi|254516703|ref|ZP_05128762.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR5-3] gi|219675126|gb|EED31493.1| Tol-Pal system beta propeller repeat protein TolB [gamma proteobacterium NOR5-3] Length = 428 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 91/412 (22%), Positives = 184/412 (44%), Gaps = 10/412 (2%) Query: 38 VATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 + P +A F +++VV +D +RS F+ +++ + + Sbjct: 22 IEITQGVDDPTPVAVVPFAWEGAGNAPVDMAQVVQEDFERSGQFSPVNRADMLGFPSREE 81 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + ++DW ++ ++ ++ GR EG D+L + + L+DV + +I R +A Sbjct: 82 EV-FYRDWRAIASEYVLIGRASGEG-DQLSLRYELYDVLRQARIAEGSVAGPAGEARMLA 139 Query: 156 HTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H +SD +Y+ +TG G F +R+++VS +G L + D DGA L SR+ I Sbjct: 140 HRVSDAVYEKLTGIPGAFATRLIYVSVTRNPTGKDYYRLTLADSDGARPIVLLESREPI- 198 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P ++P+ ++VAY +++ +++ NFR + +P +S +G + Sbjct: 199 MSPSWAPDGKQVAYVSFETGRP--AIFRQVLATGEREQLTNFRGLNSSPAWSPDGNSMAM 256 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + KD + DIY +D+ + R+T+ I+ S+ PD +F SDR G+ Q+Y Sbjct: 257 VLSKDGSPDIYLMDMATRRLTRVTSHYAIDTEPSWMPDGRSFLFTSDRGGRPQIYRYDLR 316 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +R++ + + V + G + +F I + ++ ++L ++ Sbjct: 317 SGLTERVTFEGNYNARARV-AQDGRNVVLVHQREGEFQIAIHDLVSNRLQVLTNTDLDES 375 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 P+ +P+G ++++ K S+D G L +P W +M Sbjct: 376 PSIAPNGSMVLYATKFGDRGILSAVSVDG-GVKFRLPARNGDVREPAWSPYM 426 >gi|256823065|ref|YP_003147028.1| Tol-Pal system beta propeller repeat-containing protein TolB [Kangiella koreensis DSM 16069] gi|256796604|gb|ACV27260.1| Tol-Pal system beta propeller repeat protein TolB [Kangiella koreensis DSM 16069] Length = 454 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 196/454 (43%), Gaps = 35/454 (7%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSI----DELGGKVSEVVSKDL 73 L ++ + A +++ P+++ KF S + +++++ DL Sbjct: 8 LAIISISLMALASKAEIQIYITEGRSDARPIAVVPFKFESESAVQGQPPFDFAKIIADDL 67 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 +RS FN Q + D + ++W LG +V G V + V + L D Sbjct: 68 RRSGKFNPTEISKLPQHPYSIDQV-NLEEWRKLGVDGVVYGTVSQTASGNYMVSYDLIDP 126 Query: 134 KDRKQIIG--------------------KKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 + K I K ++R AH +D+IY+++TGE+G F Sbjct: 127 FNDKAIFSADIEDGSYPLIPSSSHLMVLKTKVVDNDNFRWGAHIAADEIYEALTGERGAF 186 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++I +V + + L V D DG N + + SR I P +SP+ +++Y T+++ Sbjct: 187 ATQIAYVEVNR-NDPRPYQLFVADSDGFNGKRIFASRSPI-MSPTWSPDSSQLSYVTFEN 244 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + + D + + + +++ AP +S +G + ++ + KD ++Y ++L + Sbjct: 245 GRS-EIVIQDIASGQ-REIVASYKGFNSAPAWSPDGSKMVVVLSKDGNPELYLLELATKQ 302 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +RLT I+ S++PD ++F SDR G+ Q+Y ++ R++ + + Sbjct: 303 LQRLTRHYAIDTEPSWAPDGKSLIFTSDRGGRPQIYRIRLADKKVDRVTFEGIHNAGAE- 361 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 ++P G I + + I Q +L + + ++ + +P+G +IFS G Sbjct: 362 FTPDGKSIVMVHQANGSYHIAAQDLVTGQLTVLTKTTLDESLSIAPNGSMIIFSTVDGGQ 421 Query: 414 TGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L ++ ++GR + L T P W F+ Sbjct: 422 K--VLSAVSMDGRFKARLPATVGEVKAPAWSPFI 453 >gi|77920565|ref|YP_358380.1| TolB protein [Pelobacter carbinolicus DSM 2380] gi|119371048|sp|Q3A097|TOLB_PELCD RecName: Full=Protein tolB; Flags: Precursor gi|77546648|gb|ABA90210.1| TolB protein [Pelobacter carbinolicus DSM 2380] Length = 443 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 208/443 (46%), Gaps = 24/443 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIA-----FTKFVSIDELGGKVS 66 M+ + LL+ L+ T++ A V + +++A + + ++ Sbjct: 13 TMRRFVTLLIALLC-LSATAVQAQ--VEIRAPGQQTIAVANTQLVPLSGTPLPAIAAELH 69 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNP---DSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 +V++ DL+ S +F + +F P S F W LGA++L+ G +G+ R Sbjct: 70 DVMAADLELSGLFRQLDPAAFLDDARRPGLTSSRVDFNQWALLGAEILIKGGYQLQGE-R 128 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 L V+FRL+DV R+ + G+++ R +AH +D + +S+TG +G F+SRI ++ Sbjct: 129 LLVDFRLYDVVHRRLLTGRRYAGLRRDVRTMAHKFADQVLKSVTGREGPFSSRIAYIDNR 188 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L +MD DGAN LT R I+ P FSPN ++V Y +Y + +Y Sbjct: 189 TG----HKELYLMDTDGANALRLTDHRS-IVLNPDFSPNGREVIYTSYRRGNP-DLYRKQ 242 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + R+ + + +A RF +G+ ++ ++ + + RLT+ I Sbjct: 243 LSTGQEA-RLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGI 301 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++ S+SP ++ F SDR+G ++VM G R++ + + + P WSP G IAF Sbjct: 302 DVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYNAT-PAWSPDGKRIAF 360 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 T+ F I ++ DG+ ER L N + P WSP R L++S +DG G +Y + Sbjct: 361 TRLEKGVFDIYTVRPDGTDERRLTFGPGNKEHPRWSPDSRFLVYSSDQDGRKG--IYIMR 418 Query: 423 LNGRNETLIN-TPAYASDPQWVG 444 +G I+ P W G Sbjct: 419 ADGTGIRRISAGGGQCQHPAWSG 441 >gi|170717585|ref|YP_001783488.1| translocation protein TolB [Haemophilus somnus 2336] gi|189035983|sp|B0UVJ6|TOLB_HAES2 RecName: Full=Protein tolB; Flags: Precursor gi|168825714|gb|ACA31085.1| Tol-Pal system beta propeller repeat TolB [Haemophilus somnus 2336] Length = 434 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 105/447 (23%), Positives = 197/447 (44%), Gaps = 25/447 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSA--NYSPVSIAFTKFVSIDELGGKVS 66 + L L +++ F ++ A V++ + + P++I K+ D + V+ Sbjct: 1 MKFSAYLTTLFIVLFSLFIQTVQAESEVRIVIDEGVDSARPIAIIPFKWNGSDSMPIDVA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +++S DL+ S FN I+ QK T+ + W+SLG +V G+V K + Sbjct: 61 DIISADLRNSGKFNPIAVSKMPQKPTSASEVIS-DVWSSLGIDAVVVGQVTPNEKG-YSI 118 Query: 127 EFRLWDV-----KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 ++L D + + ++ + R AHTISD++++ +T +G F ++I +V Sbjct: 119 AYQLVDTIGASGNSGEVLSQNQYAVPKNAIRLGAHTISDEVFEKLTAIRGAFRTKIAYVV 178 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + G + + D DG N +++ S Q L P +SP+ K+AY ++++ + Sbjct: 179 QKN-GGSKPYQVRIADYDGHN-QFIVYSSSQPLMSPAWSPDGSKLAYVSFENRKSQLI-- 234 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + A + I F AP FS +G + + KD ++IY ++L + +LT+ Sbjct: 235 VHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFASSKDGVLNIYVMNLGNGTISQLTSGA 294 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N S+SPD I+F SDR G Q+Y M G+ +S + S S G ++ Sbjct: 295 GNNTEPSWSPDGQSIIFTSDRAGGPQIYQMDVVGNGVSLVSAGRGYS---GKISADGSIL 351 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 I +L ++P+ SP+G +I+S + G L + Sbjct: 352 VMIYGD----NIVKKDLATGVTEMLSSTFLDESPSISPNGIMIIYSSTQG--LGKVLQLV 405 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFMD 447 +GR + L ++ P W +++ Sbjct: 406 SADGRFKARLPSSDGQIKFPAWSPYLN 432 >gi|270156706|ref|ZP_06185363.1| Tol-Pal system beta propeller repeat protein TolB [Legionella longbeachae D-4968] gi|289164847|ref|YP_003454985.1| TolB protein [Legionella longbeachae NSW150] gi|269988731|gb|EEZ94985.1| Tol-Pal system beta propeller repeat protein TolB [Legionella longbeachae D-4968] gi|288858020|emb|CBJ11880.1| TolB protein [Legionella longbeachae NSW150] Length = 419 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 112/438 (25%), Positives = 196/438 (44%), Gaps = 23/438 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N I L LLL + F + + S + IA F + ++ +V+ Sbjct: 2 INRIIKLFLLLFMQQVFA-------LDLELTQGVNSALPIAINSF-GANGTAQEIGQVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F ++S Q S+ LGA +VTGRV + G +R V F L Sbjct: 54 NDLNLSGQFRIVSG---PQGPNGQSSVNTL---RQLGADSVVTGRVTQVG-NRYEVSFTL 106 Query: 131 WD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D V ++ K + S R +AH ISD++YQ +TGE+G F++RI ++S I Sbjct: 107 TDAVAKGATLLTKTYQISANQIRPLAHHISDEVYQKLTGERGVFSTRIAYISVQRTPKIT 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S D I P +SP+ + ++Y +++ + +++ + + Sbjct: 167 RYSLEVADADGYNPQSLLVSGDPI-MSPAWSPDGKSISYVSFEKKKA-QIFTVSVETGQ- 223 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + I +F + AP +S +G + + + K IYSVD+ S ++LT I+ Y Sbjct: 224 RRLITSFPGINGAPAWSPDGNQLAVVLSKSGTPKIYSVDIHSGTMKQLTFGDAIDTEPRY 283 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +PD I+F S R G Q+Y + + R++ + + ++P I Sbjct: 284 APDGKSILFTSGRGGSPQIYRLSLATGEVARVTFEGNYNARA-SYTPDMKNIVMLHRDDR 342 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 +F IG+ G L ++P+ +P+GR ++++ + + L+GR Sbjct: 343 QFNIGLQSAAGGPILSLTSSGRDESPSVAPNGRLVLYATHNQDKGVLGI--VSLDGRIRM 400 Query: 429 TLINTPAYASDPQWVGFM 446 L +P W ++ Sbjct: 401 RLPAREGDVQEPAWSPYL 418 >gi|113460408|ref|YP_718470.1| translocation protein TolB [Haemophilus somnus 129PT] gi|123031156|sp|Q0I1N1|TOLB_HAES1 RecName: Full=Protein tolB; Flags: Precursor gi|112822451|gb|ABI24540.1| biopolymer transport protein [Haemophilus somnus 129PT] Length = 434 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 106/447 (23%), Positives = 197/447 (44%), Gaps = 25/447 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSA--NYSPVSIAFTKFVSIDELGGKVS 66 + L L +++ F ++ A V++ + + P++I K+ D + V+ Sbjct: 1 MKFSAYLTTLFIVLFSLFIQTVQAESEVRIVIDEGVDSARPIAIIPFKWNGSDSMPIDVA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +++S DL+ S FN I+ QK T+ + W+SLG +V G+V K + Sbjct: 61 DIISADLRNSGKFNPIAVSKMPQKPTSASEVIS-DVWSSLGIDAVVVGQVTPNEKG-YSI 118 Query: 127 EFRLWDV-----KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 ++L D + + ++ + R AHTISD++++ +T +G F ++I +V Sbjct: 119 AYQLVDTIGASGNAGEVLSQNQYAVPKNAIRLGAHTISDEVFEKLTAIRGAFRTKIAYVV 178 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + G + V D DG N +++ S Q L P +SP+ K+AY ++++ + Sbjct: 179 QK-HGGSKPYQVRVADYDGHN-QFIVYSSSQPLMSPAWSPDGSKLAYVSFENRKSQLI-- 234 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + A + I F AP FS +G + + KD ++IY ++L + +LT+ Sbjct: 235 VHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFASSKDGVLNIYVMNLGNGTISQLTSGA 294 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N S+SPD I+F SDR G Q+Y M G+ +S + S S G ++ Sbjct: 295 GNNTEPSWSPDGQSIIFTSDRAGGPQIYQMDVFGNGISLVSAGRGYS---GKISADGSIL 351 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 I +L ++P+ SP+G +I+S + G L + Sbjct: 352 VMIYGD----NIVKKDLATGVTEMLSSTFLDESPSISPNGIMIIYSSTQG--LGKVLQLV 405 Query: 422 DLNGRNE-TLINTPAYASDPQWVGFMD 447 +GR + L ++ P W +++ Sbjct: 406 SADGRFKARLPSSDGQIKFPAWSPYLN 432 >gi|325579033|ref|ZP_08148989.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus parainfluenzae ATCC 33392] gi|325159268|gb|EGC71402.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus parainfluenzae ATCC 33392] Length = 427 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 180/440 (40%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + L +V+ V++ + IA F + ++V+ D Sbjct: 4 IKRVMGLFVVMFAFASTAMAEDEVRIVIDEGVDGARPIAVVPFAG--SAPENIGQIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I Q+ T + + + W +LG +V G+V G + ++L D Sbjct: 62 LRNSGKFNPIPVSQMPQQPTTAAEV-KPEAWTALGIDAVVVGQVTSTGSG-YNISYQLVD 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 + + + R AHT+SD++++ +TG +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLAQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ +++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSSQPIMSPAWSPDGKRLAYVSFENKKSQLV--VQDLGS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + K + +F AP FS +G + + +D ++IY + +LT N Sbjct: 236 GSRKVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVMGSNGGTPTQLTRGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD S I+F SDR G Q+Y M ++G + S G + Sbjct: 296 SWSPDGSSILFTSDRSGSPQVYRMSASGGGASPV-----GGRGSAQISSDGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTSGSSEVLSTSFLGESPSISPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSNGQVKFPAWSPYL 425 >gi|319775689|ref|YP_004138177.1| TolB protein [Haemophilus influenzae F3047] gi|319898096|ref|YP_004136293.1| tolb protein [Haemophilus influenzae F3031] gi|317433602|emb|CBY81986.1| TolB protein [Haemophilus influenzae F3031] gi|317450280|emb|CBY86496.1| TolB protein [Haemophilus influenzae F3047] Length = 427 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + +L +++ V++ + IA FV +S++V+ D Sbjct: 4 LKCLVSVLAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAVVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|251793058|ref|YP_003007784.1| translocation protein TolB [Aggregatibacter aphrophilus NJ8700] gi|247534451|gb|ACS97697.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter aphrophilus NJ8700] Length = 426 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 99/441 (22%), Positives = 189/441 (42%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + I + L +++ G S A V++ + + P+++ K+ ++++ Sbjct: 1 MKVFIRIFSLFIMLFGLTSVS-RAEVRIVIDEVMDSARPIAVVPFKWNGPGSAPADIAKI 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL+ S FN + Q+ T+ + + W++ G + ++ G+V + + Sbjct: 60 ISDDLRNSGKFNPMEVSKMPQQPTSAAEV-NPEVWSAQGIEAVIVGQVTP-SNGGFDIAY 117 Query: 129 RLWDV--KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + ++ + R AHT+SD+ ++ +TG KG F +RI +V + Sbjct: 118 QLVDTMGSAGSILSQNQYTVTQKWLRYGAHTVSDESFEKLTGIKGAFRTRIAYVVQKN-G 176 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + V D DG N +++ Q P +SP+ +K+AY +++++ + + Sbjct: 177 GSQPYEVRVSDYDGFN-QFIVNRSSQPFMSPAWSPDGKKLAYVSFENKKAQII--LQDLG 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A K + +F AP FS +G R + KD ++IY ++L S +LT+ N Sbjct: 234 SMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVINLGSGQVSQLTSGAGNNTE 293 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD IVF SDR G Q+Y M ++G + S G + Sbjct: 294 PSWSPDGQSIVFTSDRGGSPQVYRMSASGGGASLV-----GGRGSGQISSDGSTLVMI-- 346 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I +L ++P+ SP+G +I+S + G L + +GR Sbjct: 347 -DGSNNIVKKDLASGSAEVLSSTFLDESPSISPNGIMIIYSSTQG--LGKVLQLVSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKARLPGNDGQVKFPAWSPYL 424 >gi|162146628|ref|YP_001601087.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5] gi|161785203|emb|CAP54749.1| protein tolB precursor [Gluconacetobacter diazotrophicus PAl 5] Length = 462 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 158/456 (34%), Positives = 238/456 (52%), Gaps = 31/456 (6%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFV-----------KVATNSANYSPVSIAFTK 54 +A L ++ L + G + A ++ + A +P+ I Sbjct: 20 LLATHLGRRMLLGTGGGIAAGILAAPLSALAQGAPAAGPGAAEITVDQARTAPIPIVIPA 79 Query: 55 FVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTG 114 + G VS V+S DL +F+ IS P +P F + SLGA+ LV+ Sbjct: 80 LGG--DAGALVSSVISGDLGNCGLFSPISGSL-------PVGVPDFGTYKSLGARALVS- 129 Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 G LRVEFRLWDV +QI G + + RKIAH I+D IY+ + GEKG FN Sbjct: 130 GSATTGGGGLRVEFRLWDVLTGQQIQGTAYTAGAGDARKIAHIIADVIYERLLGEKGYFN 189 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +++ S L +MD+DGAN YL+ + PRFSP ++A+ +Y + Sbjct: 190 TRIAYIARSGPREHQTTRLAIMDQDGANSHYLS-GGQWLTLTPRFSPTSDQLAFMSYANN 248 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 RVY+++ R + +G+F + APRF+ +G+ ++S + DIYSVDL + A Sbjct: 249 RP-RVYMLNLATGRQ-QLLGDFEGISFAPRFAPDGRAVILSATRGAGSDIYSVDLVTRAK 306 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++T++ I+ S YSPD SQIVF SDR G QLY+M + G D +RIS Y PVW Sbjct: 307 RQITSSGAIDTSPCYSPDGSQIVFNSDRGGSPQLYIMSAGGGDARRISY-GNGVYGSPVW 365 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK---- 410 SP+GDLIAFT+ + F++GVM DG+ ER++ + +++PT+ P+GR + F R+ Sbjct: 366 SPRGDLIAFTRIANGSFSLGVMAPDGTGERIMTQGFTVESPTFCPNGRVIAFCRQTAAGA 425 Query: 411 -DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 S + ++D+ G +E I ASDP W Sbjct: 426 GGAGFSSGISTVDITGFHERAIP-AGGASDPAWSPL 460 >gi|296117355|ref|ZP_06835945.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769] gi|295976121|gb|EFG82909.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769] Length = 457 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 163/448 (36%), Positives = 238/448 (53%), Gaps = 20/448 (4%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG 62 R + + + L +G S ++ + A +P+ I + +G Sbjct: 23 RRGVMGAGIAGGLLATPLFAPVGVAHAQSAAPDAEITVDQARTAPIPIVIPSL--GNGIG 80 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 ++++V+S DL +F IS P P F + ++GA+ +V+GR G Sbjct: 81 QQITDVISADLGNCGLFRPISASM-------PTGRPDFATYKTMGARAMVSGRAENTGS- 132 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 +RVEFRLWDV QI G + +S WR+IAH ISD IY + GEKG FNSRI +V+ Sbjct: 133 SIRVEFRLWDVTTGSQIQGTAYTASSQDWRRIAHVISDVIYTRLLGEKGYFNSRIAYVAM 192 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S L +MD+DGA+ RYLT + + PRF+P ++A+ +Y + RVYL Sbjct: 193 SGPRSHQTRRLAIMDQDGADSRYLTSGQWDTI-TPRFNPANSELAFMSYINNRP-RVYLF 250 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + +G F M APRFS G ++SV + D+YSVDL S + ++T + Sbjct: 251 NLNTGQQ-RMLGEFSGMSFAPRFSPRGDAVVLSVTRGSGSDLYSVDLSSMSRHQITASGA 309 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+ S YSPD SQIVF SDR G QLYVM + G D KRIS Y PVWSP+GDLIA Sbjct: 310 IDTSPCYSPDGSQIVFNSDRGGSPQLYVMPATGGDAKRISY-GHGHYGSPVWSPRGDLIA 368 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG-----SK 417 F++ + F++GVM DG+ ER+L + +++PT+ P+GR L F R+ G S Sbjct: 369 FSRIANGSFSLGVMAPDGTGERILTQGFTVESPTFCPNGRVLAFCRQTAAHAGGAGFSSG 428 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGF 445 + SID+ G +E + +SDP W Sbjct: 429 ISSIDITGFHERPLPV-GSSSDPTWSPL 455 >gi|209543380|ref|YP_002275609.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5] gi|209531057|gb|ACI50994.1| Tol-Pal system beta propeller repeat protein TolB [Gluconacetobacter diazotrophicus PAl 5] Length = 462 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 158/456 (34%), Positives = 237/456 (51%), Gaps = 31/456 (6%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFV-----------KVATNSANYSPVSIAFTK 54 +A L ++ L + G + A ++ + A +P+ I Sbjct: 20 LLATHLGRRMLLGTGGGIAAGILAAPLSAVAQGAPAAGPGAAEITVDQARTAPIPIVIPA 79 Query: 55 FVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTG 114 + G VS V+S DL +F IS P +P F + SLGA+ LV+ Sbjct: 80 LGG--DAGALVSSVISGDLGNCGLFAPISGSL-------PVGVPDFGTYKSLGARALVS- 129 Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 G LRVEFRLWDV +QI G + + RKIAH I+D IY+ + GEKG FN Sbjct: 130 GSATTGGGGLRVEFRLWDVLTGQQIQGTAYTAGAGDARKIAHIIADVIYERLLGEKGYFN 189 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +++ S L +MD+DGAN YL+ + PRFSP ++A+ +Y + Sbjct: 190 TRIAYIARSGPRAHQTTRLAIMDQDGANSHYLS-GGQWLTLTPRFSPTSDQLAFMSYANN 248 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 RVY+++ R + +G+F + APRF+ +G+ ++S + DIYSVDL + A Sbjct: 249 RP-RVYMLNLATGRQ-QLLGDFEGISFAPRFAPDGRAVILSATRGAGSDIYSVDLVTRAK 306 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++T++ I+ S YSPD SQIVF SDR G QLY+M + G D +RIS Y PVW Sbjct: 307 RQITSSGAIDTSPCYSPDGSQIVFNSDRGGSPQLYIMSAGGGDARRISY-GNGVYGSPVW 365 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK---- 410 SP+GDLIAFT+ + F++GVM DG+ ER++ + +++PT+ P+GR + F R+ Sbjct: 366 SPRGDLIAFTRIANGSFSLGVMAPDGTGERIMTQGFTVESPTFCPNGRVIAFCRQTAAGA 425 Query: 411 -DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 S + ++D+ G +E I ASDP W Sbjct: 426 GGAGFSSGISTVDITGFHERAIP-AGGASDPAWSPL 460 >gi|329122257|ref|ZP_08250845.1| translocation protein TolB [Haemophilus aegyptius ATCC 11116] gi|327473818|gb|EGF19235.1| translocation protein TolB [Haemophilus aegyptius ATCC 11116] Length = 427 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + +L +++ V++ + IA FV +S++V+ D Sbjct: 4 LKCLVSVLAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|212219431|ref|YP_002306218.1| TolB [Coxiella burnetii CbuK_Q154] gi|212013693|gb|ACJ21073.1| TolB [Coxiella burnetii CbuK_Q154] Length = 440 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 102/426 (23%), Positives = 181/426 (42%), Gaps = 14/426 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQ 84 F + + + + + IA F L + +V+ DLQ S F + Sbjct: 20 FVPVSYGALDLELTKGVTAAIPIAIMPFAGPSVLAPGDETIPQVIKNDLQNSGQFRVTGS 79 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKK 143 + Q + + I + W LV G + G R RV F L +V +++ + Sbjct: 80 GNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRYRVAFTLINVFDSNNRLLSES 138 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGA 201 F + R AH ISD IYQ +TG +G F+++I +V S + K +L V D DG Sbjct: 139 FNVNAKELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGF 198 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + L S D + P +SP+ K+AY +++ +YL D R +R+ + Sbjct: 199 NPQPLLVS-DMPIMSPTWSPDGNKIAYVSFE-GHRAAIYLQDLATGR-RQRLSEAPGING 255 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS + K+ + + K IY ++L +T I+ ++SPD ++F S+ Sbjct: 256 APAFSPDSKQLALVLTKTGNPKIYILNLADGHLREITKGWSIDTEPAWSPDGKSLLFTSN 315 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R+G Q+Y R++ + + P + P G I F I Sbjct: 316 RDGTPQIYNYSFADGSINRVTYRGDYNAR-PSFMPDGKSIIMMHRENGLFGIARQDLSTG 374 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 Q ++L E ++P+ +P+G+ I++ + G L + ++G+ + L +P Sbjct: 375 QVQILSESGTDESPSLAPNGKMAIYAMEYGGRG--VLAQVSIDGQIKLRLPARNGNVQEP 432 Query: 441 QWVGFM 446 W ++ Sbjct: 433 AWSPYL 438 >gi|153207184|ref|ZP_01945963.1| TolB protein [Coxiella burnetii 'MSU Goat Q177'] gi|120576845|gb|EAX33469.1| TolB protein [Coxiella burnetii 'MSU Goat Q177'] Length = 437 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 102/426 (23%), Positives = 181/426 (42%), Gaps = 14/426 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQ 84 F + + + + + IA F L + +V+ DLQ S F + Sbjct: 17 FVPVSYGALDLELTKGVTAAIPIAIMPFAGPSVLAPGDETIPQVIKNDLQNSGQFRVTGS 76 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK-DRKQIIGKK 143 + Q + + I + W LV G + G R RV F L +V +++ + Sbjct: 77 GNLDQTAASLEQI-DYSYWRKQKVNALVVGAINPLGMRRYRVAFTLINVFDSNNRLLSES 135 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGA 201 F + R AH ISD IYQ +TG +G F+++I +V S + K +L V D DG Sbjct: 136 FNVNAKELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGF 195 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + L S D + P +SP+ K+AY +++ +YL D R +R+ + Sbjct: 196 NPQPLLVS-DMPIMSPTWSPDGNKIAYVSFE-GHRAAIYLQDLATGR-RQRLSEAPGING 252 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP FS + K+ + + K IY ++L +T I+ ++SPD ++F S+ Sbjct: 253 APAFSPDSKQLALVLTKTGNPKIYILNLADGHLREITKGWSIDTEPAWSPDGKSLLFTSN 312 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R+G Q+Y R++ + + P + P G I F I Sbjct: 313 RDGTPQIYNYSFADGSINRVTYRGDYNAR-PSFMPDGKSIIMMHRENGLFGIARQDLSTG 371 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDP 440 Q ++L E ++P+ +P+G+ I++ + G L + ++G+ + L +P Sbjct: 372 QVQILSESGTDESPSLAPNGKMAIYAMEYGGRG--VLAQVSIDGQIKLRLPARNGNVQEP 429 Query: 441 QWVGFM 446 W ++ Sbjct: 430 AWSPYL 435 >gi|332290106|ref|YP_004420958.1| translocation protein TolB [Gallibacterium anatis UMN179] gi|330433002|gb|AEC18061.1| translocation protein TolB [Gallibacterium anatis UMN179] Length = 432 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 192/437 (43%), Gaps = 24/437 (5%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 +L + T + A V++ + + P+++ K+ +++++S DL+ Sbjct: 9 WILAIACLLVQATQVFAEVRIVIDEGVDSARPIAVVPFKWNGPGSAPADIADIISSDLRF 68 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S FN I D Q+ T+ + + W++LG +V G+V G + ++L D Sbjct: 69 SGKFNPIPVDRMPQQPTSAGEV-NVEAWSALGIDAIVVGQVTPAGGG-YSISYQLVDTVG 126 Query: 136 R----KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + ++ W R AHT+SD +++ +TG +G F +RI +V ++ Sbjct: 127 ASGTPGAVLSQNSYTVTNQWIRWGAHTVSDQVFEKLTGIRGAFRTRIAYVIQNNSG---S 183 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG N + S I P +S + +K+AY+ ++ + L V + ++ Sbjct: 184 YDLQVSDYDGYNAFNVFHSSQPI-MSPAWSADGKKLAYSVFEKKKSLLV--LQDLASKSR 240 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 K I + AP FS +G R + +D ++IY + + + +LT+ N S+S Sbjct: 241 KIIASLPGHNGAPSFSPDGSRIAFASNEDGVLNIYVMGVGGGSPVKLTSGSGNNTEPSWS 300 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D S I+F SDR G +Y+M +NG +S + + SP G I + Sbjct: 301 SDGSSIIFTSDRGGAPAVYMMGANGGGASLVSP--PGNSYSGEMSPDGKEIVMVNGN--- 355 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-T 429 + + L ++P+++P+G +I+S + +L + +GR + Sbjct: 356 -KLVKKDLESGSITALTSTFLDESPSFAPNGTMVIYSSTQGVSKVLQL--VSSDGRFKAR 412 Query: 430 LINTPAYASDPQWVGFM 446 L + P W ++ Sbjct: 413 LPGSGGQIKFPAWSPYL 429 >gi|301169084|emb|CBW28681.1| periplasmic protein [Haemophilus influenzae 10810] Length = 427 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + +L +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVLAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAMSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEIRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|145632629|ref|ZP_01788363.1| translocation protein TolB precursor [Haemophilus influenzae 3655] gi|229844455|ref|ZP_04464595.1| translocation protein TolB [Haemophilus influenzae 6P18H1] gi|144986824|gb|EDJ93376.1| translocation protein TolB precursor [Haemophilus influenzae 3655] gi|229812704|gb|EEP48393.1| translocation protein TolB [Haemophilus influenzae 6P18H1] Length = 427 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 188/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + +L +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVLAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|195939092|ref|ZP_03084474.1| translocation protein TolB [Escherichia coli O157:H7 str. EC4024] Length = 389 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 15/396 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANY--SPVSIAFTKFVSIDELGGKVSEVVS 70 +++ L+ + + +HA V++ +S P+ + ++ + +V+ Sbjct: 5 LRVAFGFLI-----LWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVA 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + + W++LG +V G+V V ++L Sbjct: 60 ADLRNSGKFNPLDRARLPQQPGSAQEV-QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQL 118 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 D + + + R HT SD++++ +TG KG F +RI +V ++ G Sbjct: 119 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQ 177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L V D DG N +++ Q L P +SP+ K+AY T++ ++ T + Sbjct: 178 FPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N + Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 294 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + PDS + F SD+ G+ Q+Y + NG +RI+ + + D S G + +G Sbjct: 295 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNG 353 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + I ++L + P+ +P+G + Sbjct: 354 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMV 389 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 15/217 (6%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +A +Y Y T D +++ + R VQ + Sbjct: 126 GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR--------TRIAYVVQTNGGQ 177 Query: 283 DIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 Y + D + + +S ++SPD S++ + + G+ L + + Sbjct: 178 FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 237 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWS 398 +++ + P +SP G +AF + VM Q R + + SN PTW Sbjct: 238 QVASFPRHN-GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF 296 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 P ++L F+ + G ++Y +++NG I Sbjct: 297 PDSQNLAFTSDQAGR--PQVYKVNINGGAPQRITWEG 331 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 314 SQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 ++I + G + +L V +G +Q + P WSP G +A+ F + Sbjct: 165 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGR 223 Query: 371 FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNE 428 A+ + R + + AP +SP G L F+ K G LY +DL +G+ Sbjct: 224 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS--LNLYVMDLASGQIR 281 Query: 429 TLINTPAYASDPQWVG 444 + + + ++P W Sbjct: 282 QVTDGRSNNTEPTWFP 297 >gi|148827587|ref|YP_001292340.1| translocation protein TolB [Haemophilus influenzae PittGG] gi|166229980|sp|A5UGQ1|TOLB_HAEIG RecName: Full=Protein tolB; Flags: Precursor gi|148718829|gb|ABQ99956.1| hypothetical protein CGSHiGG_05070 [Haemophilus influenzae PittGG] Length = 427 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 93/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GSRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGNATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|260582354|ref|ZP_05850147.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae NT127] gi|260094722|gb|EEW78617.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae NT127] Length = 427 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 93/440 (21%), Positives = 186/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEIRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--IQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|145630447|ref|ZP_01786228.1| translocation protein TolB precursor [Haemophilus influenzae R3021] gi|144984182|gb|EDJ91619.1| translocation protein TolB precursor [Haemophilus influenzae R3021] Length = 427 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 94/440 (21%), Positives = 186/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEIRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|261855154|ref|YP_003262437.1| Tol-Pal system beta propeller repeat protein TolB [Halothiobacillus neapolitanus c2] gi|261835623|gb|ACX95390.1| Tol-Pal system beta propeller repeat protein TolB [Halothiobacillus neapolitanus c2] Length = 435 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 116/440 (26%), Positives = 209/440 (47%), Gaps = 14/440 (3%) Query: 11 LNMKINLCLLLVLIGGFF--PTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +I L +L G F P A + + + S V IA F + + + Sbjct: 1 MKARIQRWGLWILSGLLFLAPAVSQAELNIVISGGQESGVPIAVVPFSTTTN--TDFASI 58 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + DL RS F ++ D + + P+ + +F W + AQ LV G+V+++G + F Sbjct: 59 IDADLARSGQFAPLTTDQMPSQPSAPEQV-QFDQWRTGKAQYLVVGKVVQQG-GNYQATF 116 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSG 187 L +V + +Q+ G+ + ++ R IAH I+D I++ ITG +G F+++I +V+E+ Sbjct: 117 YLLNVTNGQQMTGRVISAPVSAARSIAHRIADIIFKQITGVRGAFDTKIAYVTETDGPGK 176 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L V D DGAN + + S + L P +SP+ K+AY +++ +++ D R Sbjct: 177 KRRYTLEVADSDGANPQTVL-SSNFPLMSPTWSPDGSKLAYVSFEGRRS-GIWVQDLRTG 234 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + + F + AP +S G + I++ K + +IY VDL + ++TN IN A Sbjct: 235 QRYQ-LTKFPGINGAPSWSPKGNKIAITLSKYHSPNIYVVDLDTRNLTQVTNDGSINTEA 293 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + PD+ +VF SDR G QL+ S +R++ + SP G +A Sbjct: 294 CWLPDNQTLVFTSDRSGSPQLFEKTVGTSSAQRLTFGLSYAAGG-AISPDGKTLALLAGG 352 Query: 368 GEKFAIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 F + V G R + + + P+++P+G LI++ + G + K+ + G Sbjct: 353 NGGFRVAVQSLSGGGSDLRYISNGGSEERPSFAPNGSMLIYASQVGGSSVLKVSPVSG-G 411 Query: 426 RNETLINTPAYASDPQWVGF 445 ++TL DP W F Sbjct: 412 ESQTLRFARGKVRDPAWGPF 431 >gi|16272330|ref|NP_438543.1| translocation protein TolB [Haemophilus influenzae Rd KW20] gi|260580555|ref|ZP_05848383.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae RdAW] gi|1174729|sp|P44677|TOLB_HAEIN RecName: Full=Protein tolB; Flags: Precursor gi|1573352|gb|AAC22040.1| colicin tolerance protein (tolB) [Haemophilus influenzae Rd KW20] gi|260092897|gb|EEW76832.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus influenzae RdAW] Length = 427 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 94/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|68248985|ref|YP_248097.1| translocation protein TolB [Haemophilus influenzae 86-028NP] gi|81336603|sp|Q4QNG0|TOLB_HAEI8 RecName: Full=Protein tolB; Flags: Precursor gi|68057184|gb|AAX87437.1| TolB [Haemophilus influenzae 86-028NP] Length = 427 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 94/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|254468571|ref|ZP_05081977.1| Tol-Pal system beta propeller repeat protein TolB [beta proteobacterium KB13] gi|207087381|gb|EDZ64664.1| Tol-Pal system beta propeller repeat protein TolB [beta proteobacterium KB13] Length = 425 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 111/429 (25%), Positives = 207/429 (48%), Gaps = 13/429 (3%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI--DELGGKVSEVVSKDLQRS 76 L + I F+ + A + + +S+A F + ++ V+ DL RS Sbjct: 4 LAFLFITLFYLIPLPAIEVIDILGGKANELSVAVIPFQDDLIENEKNQIHNVIKSDLSRS 63 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F +I + T+ + + + W+ L ++LV GRV + G ++++V + L DV Sbjct: 64 GFFRVIDTGGVNKLPTSLNDV-DYSFWSGLQTELLVIGRVQR-GDNQIKVVYELIDVFKE 121 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 K ++ ++ + R+I H IS+ IY+ ITG KG F+++I FV + + K L V Sbjct: 122 KMMVSSEYSGNIKQDRQIGHQISNIIYEKITGSKGVFHTKIGFVQKINNN---KYQLNVS 178 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D DG N + + S I+ R+SP+ +K+AY +++ + + +Y+ + + + + + NF Sbjct: 179 DMDGFNKKAIVTSNQPIIST-RWSPDGEKIAYVSFEKKKPV-IYVQNLK-NGERQLVANF 235 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP +S + K+ I + + IY ++ +RL + I+ ++PD I Sbjct: 236 KGNNSAPAWSPDNKQLAIVLTYNNFSQIYVMNADGKNIKRLMRSRSIDTEPVWAPDGKSI 295 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G Q+Y + KR++ + + + P SP G L+ F F +GV Sbjct: 296 YFVSDRGGGPQIYKIDLKTEQIKRVTFEGKYNV-SPQLSPDGKLLTFITNDNGAFKVGVQ 354 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA- 435 +Q L + N +AP +SP+G ++++ KD + + L ++ LNG +INT + Sbjct: 355 NLISNQVIKLTQGRNDEAPVFSPNGHMVLYT-HKDSEKETSLSTVSLNGFKTQVINTDSV 413 Query: 436 YASDPQWVG 444 + W Sbjct: 414 RNYEATWSP 422 >gi|229846469|ref|ZP_04466577.1| translocation protein TolB [Haemophilus influenzae 7P49H1] gi|229810562|gb|EEP46280.1| translocation protein TolB [Haemophilus influenzae 7P49H1] Length = 427 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 186/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L I +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLISADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|148825336|ref|YP_001290089.1| translocation protein TolB [Haemophilus influenzae PittEE] gi|166229979|sp|A5UAA5|TOLB_HAEIE RecName: Full=Protein tolB; Flags: Precursor gi|148715496|gb|ABQ97706.1| translocation protein TolB precursor [Haemophilus influenzae PittEE] gi|309972459|gb|ADO95660.1| Outer membrane integrity protein TolB [Haemophilus influenzae R2846] Length = 427 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 94/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q+ T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNF 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|50085692|ref|YP_047202.1| translocation protein TolB [Acinetobacter sp. ADP1] gi|67461952|sp|Q6F985|TOLB_ACIAD RecName: Full=Protein tolB; Flags: Precursor gi|49531668|emb|CAG69380.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter sp. ADP1] Length = 425 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 106/437 (24%), Positives = 195/437 (44%), Gaps = 18/437 (4%) Query: 13 MKINLCLLLVLIGGF---FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 M L L+ ++ A + + A IA F + + +V Sbjct: 1 MTRKHILSFALMTALGMTVTSTAFAQLHLEIAKAPEQAPKIAIVPFGND----QSIFPIV 56 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F+ S++ T + W + G +V G + + V ++ Sbjct: 57 ENDLNRSGRFSSASKNL---PTTASIDAIQASAWQAAGIPYVVVGNLKPAANNAFEVHYQ 113 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+DV+ ++ ++ + + R+ AH ISD IYQ++TG GDF+ RI +V + + Sbjct: 114 LYDVQKQQYLLNEVLTVPASRVRQAAHMISDAIYQALTGIAGDFSGRIAYVLRNPATPDQ 173 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D + Sbjct: 174 RYTLQIADTDGEQPKTVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLATGQ- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ A Y Sbjct: 231 REVLASFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQLQRMTNDNAIDTEARY 290 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SG 368 +PD +F SDR G Q+Y + S KR++ A S G IA SG Sbjct: 291 APDGKSFIFTSDRGGSPQIYRYSFDDSSTKRLTFRG-AFNARGTLSADGKNIALVHRPSG 349 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + +M +L S ++P++SP+G+ ++++ + + + +GR Sbjct: 350 SNYKVAIMNISTGIVNILTPTSLDESPSFSPNGQMVVYATYEGSRGLLSI--MSTDGRFR 407 Query: 429 -TLINTPAYASDPQWVG 444 L + +P W Sbjct: 408 MNLPSEQGEVREPAWAP 424 >gi|149910559|ref|ZP_01899198.1| Periplasmic component of the Tol biopolymer transport system [Moritella sp. PE36] gi|149806402|gb|EDM66375.1| Periplasmic component of the Tol biopolymer transport system [Moritella sp. PE36] Length = 441 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 98/439 (22%), Positives = 196/439 (44%), Gaps = 32/439 (7%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKV---SEVVSKDLQRSDVFNLISQDS 86 HA +++ + PV++ K++ + + + V++ DL+ S F+ + + Sbjct: 6 AHAALEIVITEGTNSARPVAVVPFKWLGVQPKPKDMTDFASVIADDLRNSGRFSPLERSL 65 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR---------- 136 Q ++ + W G + +V G + RL++ F+L +V Sbjct: 66 MPQTPATESAV-NYAAWKETGVEAIVIGTIKPLQDGRLQIHFQLINVLSGFKNQTPQKID 124 Query: 137 KQI--------IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 +Q+ + K S R I+H +SD I++++TG +G F +RI +V+ + Sbjct: 125 EQLVINNDHIKLNLKGNFSTRRPRHISHRLSDYIFENLTGTRGAFLTRIAYVAIN-YDDK 183 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L + D DG N L S + + P + P +K+AY + +D+ +++ D + + Sbjct: 184 YPFKLLISDYDGMNQHVLFRSTEPV-MSPSWDPTGKKLAYMSMEDKK-HEIWIYDL-VTQ 240 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + I ++ + P FS +G + + + K D+Y DL++ +RLT I+ A+ Sbjct: 241 KRELIEPYKGSNIFPVFSPDGSKLSMILSKSGQADVYVYDLKTKKLDRLTKNRGIDTEAT 300 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++PD IVF S+R G+ Q+Y + KR++ + A+ +P SP G + Sbjct: 301 WAPDGKSIVFTSERGGRPQIYQINLESKKIKRLTFEGNANL-NPSISPDGKNLVMVSLQK 359 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 K+++ + L ++P+ +P+G +I+S G L S+D GR + Sbjct: 360 GKYSVTKQDLSDGYVQKLTNGRLDKSPSIAPNGSMVIYSTVVKGKQVLSLVSMD--GRFK 417 Query: 429 TLIN-TPAYASDPQWVGFM 446 ++ + P W F+ Sbjct: 418 AVLPASDGEVKAPAWSPFL 436 >gi|145636350|ref|ZP_01792019.1| translocation protein TolB precursor [Haemophilus influenzae PittHH] gi|145270515|gb|EDK10449.1| translocation protein TolB precursor [Haemophilus influenzae PittHH] Length = 427 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 96/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ ++G +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLSGIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SPN Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPNGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M +NG + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDANGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|309750199|gb|ADO80183.1| Outer membrane integrity protein TolB [Haemophilus influenzae R2866] Length = 427 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 93/440 (21%), Positives = 185/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVLPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSVAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATVV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|1685080|gb|AAC44597.1| TolB [Haemophilus influenzae] Length = 427 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 186/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKHLVSVFAIILAITHNVFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +TG +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M +NG + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDANGGSVTSV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|118594344|ref|ZP_01551691.1| translocation protein TolB precursor [Methylophilales bacterium HTCC2181] gi|118440122|gb|EAV46749.1| translocation protein TolB precursor [Methylophilales bacterium HTCC2181] Length = 432 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 114/442 (25%), Positives = 206/442 (46%), Gaps = 15/442 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--GKVSEV 68 + L+ + S HA + S + +A F + + EV Sbjct: 1 MKQSFWKFFFLIWLVCISNAS-HALEVIEILGGKASQIPVAVIPFKDNNAQKSMQLMHEV 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEG--KDRLRV 126 ++ DL RS +F+ I + + F +W +L +Q +V G++ G +++V Sbjct: 60 ITNDLNRSGLFSSIDISGVSDYPIDEREV-NFSNWAALQSQFIVVGKIDAIGRSNSQMQV 118 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L D+ K ++ P+ +R IAH I+D IY+ +TG KG F++ I FV + Sbjct: 119 TWSLIDIYKEKTVLSVAIKGQPSQYRVIAHRIADTIYEKLTGSKGVFDTNIAFVKK---L 175 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G K SL + D DG N R + SR I+ PR+SPN +K+AY +++ + + +Y+ D Sbjct: 176 GKEKYSLFIADYDGHNPRAIVNSRYSII-SPRWSPNGKKIAYVSFEKKKPV-IYVQDIET 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + NFR AP +S + K+ I + IY++D ++L T IN Sbjct: 234 GK-RTLLANFRGNNSAPAWSPDSKKLAIVLTYSANSQIYTIDADGKNIKQLMRTRSINTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++SP+ +I F SDR G Q+Y + + ++ R++ + + P SP G L+ F Sbjct: 293 PAWSPNGKEIYFSSDRAGSAQIYKVDVDTNEVVRVTFEGNNNV-SPSLSPDGKLLLFLNQ 351 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + + +Q L + ++P +SP+G ++F+ K G +K+ ++ +NG Sbjct: 352 DNGSYRVAIQNLLSNQMLKLTNGPDDESPIFSPNGHMVLFTYKDYGK-VTKIGTVSINGL 410 Query: 427 NETLINTPAYAS-DPQWVGFMD 447 T I+ + A + W D Sbjct: 411 KMTPIDVGSEAILESTWGPLYD 432 >gi|58698639|ref|ZP_00373533.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225629902|ref|YP_002726693.1| translocation protein TolB precursor [Wolbachia sp. wRi] gi|254764846|sp|C0R560|TOLB_WOLWR RecName: Full=Protein tolB; Flags: Precursor gi|58534840|gb|EAL58945.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225591883|gb|ACN94902.1| translocation protein TolB precursor [Wolbachia sp. wRi] Length = 420 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 146/433 (33%), Positives = 227/433 (52%), Gaps = 26/433 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ ++ +S + W S +VT + + L + FRL+D Sbjct: 67 CGLFNV-------KRGAEAES----KSWKS---DTVVTVSLSEISGSALELSFRLFDTFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 VM++DG+NI+YLT D+ + PRFSPN + + Y +Y + + + D I Sbjct: 173 VMNQDGSNIKYLTNG-DRFVSTPRFSPNGKGIVYISYANGKSYII--LKNLKDNTESIIS 229 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 230 TFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQK 289 Query: 315 QIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F SD G +QLYV+ + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 290 YMAFSSDISGSQQLYVIDFTNKSKKPKRISF-GSGRYATPVWSPKGDLIAFTKIQSGKFY 348 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY +DL +N+ +++ Sbjct: 349 IGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTES-PSNSKLYLVDLVKKNQKMVS 407 Query: 433 TPAYASDPQWVGF 445 TP AS P W F Sbjct: 408 TPTNASLPDWSYF 420 >gi|126668393|ref|ZP_01739350.1| translocation protein TolB precursor [Marinobacter sp. ELB17] gi|126627102|gb|EAZ97742.1| translocation protein TolB precursor [Marinobacter sp. ELB17] Length = 449 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 108/435 (24%), Positives = 206/435 (47%), Gaps = 13/435 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--GKVSEVVS 70 ++ + L +L + A + + S + IA F + ++++V Sbjct: 24 VRAGMALFFLLATSL---PLRAELLIRITEGVDSALPIAVVPFAESGAIPPGDTLADIVQ 80 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F + + + + F+DW LG + ++ G++ ++G DRL + L Sbjct: 81 SDLTMSSEFRTLPAEKMLSLPSQRSEVH-FRDWRLLGQRYVLVGQLTRQG-DRLEARYEL 138 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +DV ++I+G+ + + R +AH +SD +Y++ITGE+G F++++ +++ V ++ Sbjct: 139 FDVNREERILGESAGAPLGNLRTLAHYVSDRVYEAITGERGAFSTQLAYITRENVGDKVR 198 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V D DG R S + I P +S + ++AY +++ +Y+ + + Sbjct: 199 YRLQVSDIDGKRSRVRLESAEPI-LSPAWSRDGSRLAYVSFETGKPA-IYVHELASGKRT 256 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 K I +FR + AP +S +GK L+++ KD DIY +DL S +LT+ I A+YS Sbjct: 257 K-IADFRGLNSAPAWSPDGKSLLMTLSKDGNADIYRMDLASRDLTKLTDHWAIETEATYS 315 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 +I F SDR G Q+Y + G + +R++ + P +G+ + + Sbjct: 316 AGGDEIFFTSDRSGGPQIYRQKGKG-EPRRMTFGSRYNAR-PRPDHKGEFVYYVHQRSSG 373 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F I +E +L + ++P+ SP+GR LI++ ++ G + + S D G +L Sbjct: 374 FHIARTNLKSGEETVLTRTESDESPSVSPNGRMLIYATRQGGASVLTVISADG-GAAYSL 432 Query: 431 INTPAYASDPQWVGF 445 T +P W Sbjct: 433 PATEGDVREPAWGPL 447 >gi|254499317|ref|ZP_05111989.1| TolB colicin import protein [Legionella drancourtii LLAP12] gi|254351472|gb|EET10335.1| TolB colicin import protein [Legionella drancourtii LLAP12] Length = 419 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 101/429 (23%), Positives = 191/429 (44%), Gaps = 17/429 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 + L + A + + S + IA F D ++S+++ DL S F Sbjct: 5 FITLFILLVTQQVFA-LDLELTQGISSALPIAINTF-GSDRASQEISQIIENDLTFSGQF 62 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD-VKDRKQ 138 ++S P++ LGA +VTGRV+ G + + F L D V + Sbjct: 63 KIVS------GPQGPNAQSSVSTLKQLGADSVVTGRVVPVG-NHYEISFTLTDAVANGTT 115 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 ++ K + + R +AH ISD++YQ +TGE+G F++RI ++S +L V D Sbjct: 116 LLTKTYQVNANQLRPLAHHISDEVYQKLTGERGIFSTRIAYISVQRTPQKTNYALEVADA 175 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N + L S + I P ++PN + ++Y +++ + +++ + + + I +F Sbjct: 176 DGHNPQSLLISSEPI-MSPSWAPNGKSISYVSFEKKRA-QIFTVSVETGQ-RRLITSFPG 232 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + AP +S +G++ + + K IYSVD+ S ++LT I+ Y+PD I+F Sbjct: 233 INGAPAWSPDGRQLAVVLSKSGTPKIYSVDINSGNMKQLTFGDAIDTEPRYAPDGKSILF 292 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 S R G Q+Y + R++ + + ++P I ++F IG+ Sbjct: 293 TSGRGGSPQIYRLSLADGQVSRMTFEGNYNARA-SYTPDMKSIVMLHRDDKQFNIGMQNV 351 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA 437 G L ++P+ +P+GR ++++ + + L+GR L Sbjct: 352 SGGPVVSLTFSGRDESPSVAPNGRLILYATHNQDKGILGI--VSLDGRIRMKLPARDGDI 409 Query: 438 SDPQWVGFM 446 +P W ++ Sbjct: 410 QEPAWSPYL 418 >gi|54297484|ref|YP_123853.1| TolB protein [Legionella pneumophila str. Paris] gi|67461926|sp|Q5X4Z1|TOLB_LEGPA RecName: Full=Protein tolB; Flags: Precursor gi|53751269|emb|CAH12680.1| TolB protein [Legionella pneumophila str. Paris] Length = 419 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 113/435 (25%), Positives = 191/435 (43%), Gaps = 22/435 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 +I LL+ G + + S + IA F D ++ V+ DL Sbjct: 4 RIISLFLLLFTGQVIA------LDLELTQGINSALPIAINSF-GSDAAAQEIGNVIENDL 56 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD- 132 S F +IS +S LGA +VTGRV + G +R+ V F L D Sbjct: 57 TISGQFKIIS------GPQGANSQSSVSTLRQLGADSVVTGRVNQVG-NRIEVSFTLADA 109 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + ++ K F + R +AH ISD++YQ +TGE+G F++RI ++S G + S Sbjct: 110 VANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRSRYS 169 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D DG N + L S + I P +SPN + ++Y +++ + ++ + + + Sbjct: 170 LEVADADGHNPQSLLVSSEPI-MSPSWSPNGKSISYVSFEKKKA-EIFTVSVETGQ-RRL 226 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I +F + AP +S +G+ + + K IY VDL S + ++LT I+ YSPD Sbjct: 227 ITSFPGINGAPAWSPDGRHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRYSPD 286 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++F S R G Q+Y + R++ + + ++P I +F Sbjct: 287 GRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARA-SYTPDMKHIVMLHREDRQFN 345 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLI 431 IGV G L ++P+ SP+ R ++++ + + SID GR L Sbjct: 346 IGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQDRGVLGIVSID--GRIRMRLP 403 Query: 432 NTPAYASDPQWVGFM 446 +P W ++ Sbjct: 404 AREGDVQEPAWSPYL 418 >gi|255319441|ref|ZP_05360656.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SK82] gi|262379404|ref|ZP_06072560.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SH164] gi|255303509|gb|EET82711.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SK82] gi|262298861|gb|EEY86774.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter radioresistens SH164] Length = 427 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 108/439 (24%), Positives = 196/439 (44%), Gaps = 18/439 (4%) Query: 11 LNMKINLCLLLVLIGGFFPT---SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +NM L L L F P + A + + A IA F + + Sbjct: 1 MNMTRKTLLALALTAVFSPAITTTAFAQLHLEIAKAPEEAPKIAIAPFAND----QSIYP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ + + Q W + +VTG + D V Sbjct: 57 IVESDLNRSGRFTSSSKNL---PASAALNNINAQSWQAAKIPYVVTGSIKSVAGDSYEVH 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ + ++ + + R+ H ISD IYQ++TG GDF+ RI +V + + Sbjct: 114 YQLYDVEKQTYLLNELLTVPASRIRQAGHMISDAIYQALTGIPGDFSGRIAYVLRNPATP 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG R + SRD I P ++P+ +K+AY +++ + +Y+ D Sbjct: 174 EQRYTLQIADTDGEQPRTVLSSRDPI-LSPAWTPDAKKLAYVSFETKRPA-IYVQDLATG 231 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + + +FR + AP FS +G+ L + ++Y +DL + +R+TN I+ A Sbjct: 232 Q-REVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEVYQMDLTTRQLKRMTNNSAIDTEA 290 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 Y+PD +F SDR G Q+Y KR++ A S G +A Sbjct: 291 RYAPDGKSFIFTSDRGGSAQIYRYSFADGSVKRLTFKG-AFNARGTLSADGKKVALVHRP 349 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G + + + +L S ++P++SP+G+ ++++ ++G+ G L + +GR Sbjct: 350 AGSNYKVAIQDIATGITNILTPTSLDESPSFSPNGQMVVYAT-REGNRGL-LAIMSTDGR 407 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 408 FRMNLPSEQGEVREPAWTP 426 >gi|145634622|ref|ZP_01790331.1| translocation protein TolB precursor [Haemophilus influenzae PittAA] gi|145268167|gb|EDK08162.1| translocation protein TolB precursor [Haemophilus influenzae PittAA] Length = 427 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKHLVGVFAIILAITHNVFAGDEVRIVIDEGVDGARPIAVVPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +TG +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V D DG N +++ Q + P +SP+ Q++AY +++++ V + Sbjct: 179 SQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLV--VQDLNS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A K + +F+ AP FS +G R + +D ++IY + +LT+ N Sbjct: 236 GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + I+F SDR G Q+Y M ++G + S G + Sbjct: 296 AWSPDGNSILFTSDRSGSPQVYRMDASGGSATAV-----GGRGSAQISADGKTLVMI--- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 348 NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + +L + P W ++ Sbjct: 406 KASLPGSDGQVKFPAWSPYL 425 >gi|42519955|ref|NP_965870.1| translocation protein TolB [Wolbachia endosymbiont of Drosophila melanogaster] gi|67461989|sp|Q73IV6|TOLB_WOLPM RecName: Full=Protein tolB; Flags: Precursor gi|42409692|gb|AAS13804.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 420 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 145/433 (33%), Positives = 224/433 (51%), Gaps = 26/433 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ + + W S +VT + + L + FRL+D Sbjct: 67 CGLFNV-----------KRSAEAESKSWKS---DTVVTVSLSEISGSALELSFRLFDAFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 VM++DG+NI+YLT D+ + PRFSPN + + Y +Y + + + D I Sbjct: 173 VMNQDGSNIKYLTNG-DRFVSTPRFSPNGKGIVYISYANGKSYII--LKNLKDNTESIIS 229 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 230 AFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQK 289 Query: 315 QIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F SD G +QLYV+ + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 290 YMAFSSDISGSQQLYVIDFTNKSKKPKRISF-GSGRYATPVWSPKGDLIAFTKIQSGKFY 348 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY +DL +N+ +++ Sbjct: 349 IGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTES-PSNSKLYLVDLVKKNQKMVS 407 Query: 433 TPAYASDPQWVGF 445 TP AS P W F Sbjct: 408 TPTNASLPDWSYF 420 >gi|148359107|ref|YP_001250314.1| TolB colicin import protein [Legionella pneumophila str. Corby] gi|166229981|sp|A5IC68|TOLB_LEGPC RecName: Full=Protein tolB; Flags: Precursor gi|148280880|gb|ABQ54968.1| TolB colicin import protein [Legionella pneumophila str. Corby] Length = 419 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 192/438 (43%), Gaps = 23/438 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 N I+L LLL + + S + IA F D ++ V+ Sbjct: 2 FNRIISLFLLLFTGQVIA-------LDLELTQGINSALPIAINSF-GSDAAAQEIGNVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F +IS +S LGA +VTGRV + G +R+ V F L Sbjct: 54 NDLTISGQFKIIS------GPQGANSQSSVSTLRQLGADSVVTGRVNQVG-NRIEVSFTL 106 Query: 131 WD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D V + ++ K F + R +AH ISD++YQ +TGE+G F++RI ++S G Sbjct: 107 ADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRS 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S + I P +SPN + ++Y +++ + ++ + + Sbjct: 167 RYSLEVADADGHNPQSLLVSSEPI-MSPSWSPNGKSISYVSFEKKKA-EIFTVSVETGQ- 223 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + I +F + AP +S +G+ + + K IY VDL S + ++LT I+ Y Sbjct: 224 RRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRY 283 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++F S R G Q+Y + R++ + + ++P I Sbjct: 284 SPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARA-SYTPDMKHIVMLHREDR 342 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 +F IGV G L ++P+ SP+ R ++++ + + SID GR Sbjct: 343 QFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQNRGVLGIVSID--GRIRM 400 Query: 429 TLINTPAYASDPQWVGFM 446 L +P W ++ Sbjct: 401 RLPAREGDVQEPAWSPYL 418 >gi|121998996|ref|YP_001003783.1| translocation protein TolB [Halorhodospira halophila SL1] gi|121590401|gb|ABM62981.1| TolB, N-terminal domain protein [Halorhodospira halophila SL1] Length = 436 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 101/443 (22%), Positives = 202/443 (45%), Gaps = 15/443 (3%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV-SIDELGG-KV 65 L + L L+ S + + IA F + ++ Sbjct: 1 MTRLKRVWSTLYLAALLSLPAHASADDDLVIDIIGGIEGATPIAIVPFQRAEGADPETEL 60 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 + +++ +L R+ F+++ ++ + + RF W + G LV G + G R Sbjct: 61 APIITANLARTGRFDILPEEDLVDTPGRMEDV-RFSTWRAQGVDHLVVGGIDDAGDGRYE 119 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 V F + D ++ G+++ + R +AHTISD IY++IT +G F RI +V+ Sbjct: 120 VRFEVLDAFQGQRTDGRRYRAEERHLRTLAHTISDRIYETITDREGTFTKRIAYVAVEQR 179 Query: 186 SGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 ++ L V D DG + + S D+ L P +SP++ ++AY +++ V++ + Sbjct: 180 EDGEGRRHRLVVADSDGHRPQTILTS-DEPLLSPAWSPSRDRLAYVSFEGRRS-EVFVQE 237 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R +R+ +FR + AP +S +G + +++ +D A +IY +D+ S LT+ I Sbjct: 238 IRTGE-RERVASFRGINSAPAWSPDGDQLAVTLSRDGAANIYLIDVASGDVRPLTDHWAI 296 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + A++ PD I F SDR G+ Q+Y +GS+ +R++ D + P SP G+ +A Sbjct: 297 DTEATWGPDGDWIYFTSDRGGRPQIYRTPPDGSETERVTYDGAYNAR-PSISPDGERMAM 355 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 ++ I + D +++ + ++P+++P+G +I++ G +L + + Sbjct: 356 VHRHDGQYYIALQDLDTEAVQIISDGPADESPSFAPNGDLVIYTT--GDTEGQRLATASV 413 Query: 424 NGRNETLINT----PAYASDPQW 442 G + + +P W Sbjct: 414 IGGAVAPLESTEEPNTRVREPAW 436 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%) Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGS 381 + +L V S+G + I E P WSP D +A+ F G + + V + + G Sbjct: 184 GRRHRLVVADSDGHRPQTILTSDE-PLLSPAWSPSRDRLAYVSFEGRRSEVFVQEIRTGE 242 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-------P 434 +ER+ AP WSP G L + +DG + +Y ID+ + + Sbjct: 243 RERVASFRGINSAPAWSPDGDQLAVTLSRDG--AANIYLIDVASGDVRPLTDHWAIDTEA 300 Query: 435 AYASDPQWVGF 445 + D W+ F Sbjct: 301 TWGPDGDWIYF 311 >gi|225677115|ref|ZP_03788116.1| translocation protein TolB precursor [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590843|gb|EEH12069.1| translocation protein TolB precursor [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 420 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 146/433 (33%), Positives = 227/433 (52%), Gaps = 26/433 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ ++ +S + W S +VT + + L + FRL+D Sbjct: 67 CGLFNV-------KRGAEAES----KSWKS---DTVVTVSLSEISGSALELSFRLFDAFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 VM++DG+NI+YLT D+ + PRFSPN + + Y +Y + + + D I Sbjct: 173 VMNQDGSNIKYLTNG-DRFVSTPRFSPNGKGIVYISYANGKSYII--LKNLKDNTESIIS 229 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 230 AFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQK 289 Query: 315 QIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F SD G +QLYV+ + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 290 YMAFSSDISGSQQLYVIDFTNKSKKPKRISF-GSGRYATPVWSPKGDLIAFTKIQSGKFY 348 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY +DL +N+ +++ Sbjct: 349 IGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTES-PSNSKLYLVDLVKKNQKMVS 407 Query: 433 TPAYASDPQWVGF 445 TP AS P W F Sbjct: 408 TPTNASLPDWSYF 420 >gi|296107155|ref|YP_003618855.1| TolB colicin import protein [Legionella pneumophila 2300/99 Alcoy] gi|295649056|gb|ADG24903.1| TolB colicin import protein [Legionella pneumophila 2300/99 Alcoy] Length = 419 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 192/438 (43%), Gaps = 23/438 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 N I+L LLL + + S + IA F D ++ V+ Sbjct: 2 FNRIISLFLLLFTGQVIA-------LDLELTQGINSALPIAINSF-GSDAAAQEIGNVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F +IS +S LGA +VTGRV + G +R+ V F L Sbjct: 54 NDLTISGQFKIIS------GPQGANSQSSVSTLRQLGADSVVTGRVNQVG-NRIEVSFTL 106 Query: 131 WD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D V + ++ K F + R +AH ISD++YQ +TGE+G F++RI ++S G Sbjct: 107 ADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRS 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S + I P +SPN + ++Y +++ + ++ + + Sbjct: 167 RYSLEVADADGHNPQSLLVSSEPI-MSPSWSPNGKSISYVSFEKKKA-EIFTVSVETGQ- 223 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + I +F + AP +S +G+ + + K IY VDL S + ++LT I+ Y Sbjct: 224 RRLITSFPGINGAPAWSPDGRHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRY 283 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++F S R G Q+Y + R++ + + ++P I Sbjct: 284 SPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARA-SYTPDMKHIVMLHREDR 342 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 +F IGV G L ++P+ SP+ R ++++ + + SID GR Sbjct: 343 QFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQDRGVLGIVSID--GRIRM 400 Query: 429 TLINTPAYASDPQWVGFM 446 L +P W ++ Sbjct: 401 RLPAREGDVQEPAWSPYL 418 >gi|148262286|ref|YP_001228992.1| WD40 domain-containing protein [Geobacter uraniireducens Rf4] gi|146395786|gb|ABQ24419.1| WD40 domain protein beta Propeller [Geobacter uraniireducens Rf4] Length = 427 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 119/421 (28%), Positives = 201/421 (47%), Gaps = 15/421 (3%) Query: 28 FPTSIHAFVKVATNSANYSPVSIA--FTKFVSID-ELGGKVSEVVSKDLQRSDVFNLISQ 84 F + +++V +++A + F ++ +SEV S DL + F ++ Sbjct: 16 FLQAQQGYLEVTAPGNRQMQLAVAQPVSLFGGPSADIAKGISEVFSFDLTLAGPFAVMPT 75 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + K F W + GA +LV D L +EFRL+DV K++ K++ Sbjct: 76 PPAESKSGIRPGEFDFAPWQAAGANLLVKSGYTVSA-DSLTIEFRLYDVARGKELAAKRY 134 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 A RKI HT D+I ++TGE+G F + FVS + + +C+MD DG N++ Sbjct: 135 SGKRADLRKIVHTFGDEIMLAVTGERGPFTGKTAFVSTATGN----KEICLMDYDGYNVQ 190 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 LT + I P FSPN +++ Y +Y + R+ + + Sbjct: 191 RLTKNGS-INLNPDFSPNGKELIYTSYKRRNPD--LYRRELFSGTEARLSARPGINVTGA 247 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G + +++ KD +IY++ +LTN I +S ++SPD S+I F SDR G Sbjct: 248 WSPDGSKIALAMSKDGNSEIYTISKDGKQLAKLTNNSAIEVSPAWSPDGSRIAFVSDRLG 307 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 K Q+++M ++GS+ R++ + P WSP+GD IA+ + G F I V+ DGS + Sbjct: 308 KPQVFIMNADGSNVSRLTTSGTYNV-SPRWSPKGDRIAYCRQHGGGFQIYVINADGSSDV 366 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWV 443 L + + + P WSP GR + FS + G +Y + +G +T ++ S P W Sbjct: 367 QLTSEGSNEHPRWSPDGRFITFSSTRGGK--EAIYVMRSDGSGQTRVSRGKGADSHPAWS 424 Query: 444 G 444 Sbjct: 425 P 425 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 13/228 (5%) Query: 135 DRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES----VVSGII 189 + K++I + +P +R+ + ++ G + S +S Sbjct: 207 NGKELIYTSYKRRNPDLYRR---ELFSGTEARLSARPGINVTGAWSPDGSKIALAMSKDG 263 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + + +DG + LT I P +SP+ ++A+ + +V++M+ Sbjct: 264 NSEIYTISKDGKQLAKLTN-NSAIEVSPAWSPDGSRIAFVSDRLGKP-QVFIMNAD-GSN 320 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 R+ + ++PR+S G R Q IY ++ ++ +LT+ + Sbjct: 321 VSRLTTSGTYNVSPRWSPKGDRIAYCRQHGGGFQIYVINADGSSDVQLTSEGSNE-HPRW 379 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 SPD I F S R GKE +YVM+S+GS Q R+S+ K + P WSP+ Sbjct: 380 SPDGRFITFSSTRGGKEAIYVMRSDGSGQTRVSRGK-GADSHPAWSPR 426 >gi|308271861|emb|CBX28469.1| Protein tolB [uncultured Desulfobacterium sp.] Length = 450 Score = 346 bits (887), Expect = 6e-93, Method: Composition-based stats. Identities = 110/457 (24%), Positives = 212/457 (46%), Gaps = 25/457 (5%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID- 59 M + + + + TS + + NS + + IA F S Sbjct: 1 MIRINVKEFLMKYFRLFIVFVAALLTMTGTSFGGYDYIDINSPSIRKMPIAVPLFKSGTG 60 Query: 60 -------ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD---SIPRFQDWNSLGAQ 109 +L K S+++S L + F ++ ++SF + + P+ F++W ++GA+ Sbjct: 61 TLKNGDMQLPKKASDMLSGMLDFTGYFKILDRESFLENLLKPETTLQTVDFRNWTTVGAE 120 Query: 110 VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 +LVTG + G D L +E RL+D Q++GKK+ R I + +I +TG Sbjct: 121 LLVTGTIQANGND-LEIEMRLFDTVKANQLVGKKYKGGVNDLRHILRLFASEIVFCLTGN 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F++RI FVS +G K + + D DG N+R T + I P +S + Q +AY Sbjct: 180 RGVFDTRIAFVS----TGSGKKEIYICDFDGTNVRQFTKNNS-ITLFPAWSSDGQWIAYT 234 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +Y + +Y+ + + + + + + + P + ++ DIY + Sbjct: 235 SY-LKGNPDLYIKNVSNNSIS--VVSKKGINITPSWMPGKFELAATLSFSGDQDIYLMTG 291 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++LTN+ ++S ++SPD ++ F S R G Q+Y+ + +++R++ + + Sbjct: 292 TGKIIKKLTNSTGSDVSPTFSPDGKKMAFVSSRSGTPQIYIQDISTGNEQRLTFNGRYN- 350 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 P WSP+G+ I ++ G K I ++ DG L + + ++P WSP G ++FS Sbjct: 351 TQPCWSPKGNKIVYSGLDGGKHNIFIIALDGKDPVQLTHNEGDNESPFWSPDGSLIVFSS 410 Query: 409 KKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 ++G S++Y + G ++ L + S+P+W Sbjct: 411 TREGP--SRIYVMTSYGTDQKRLFSISGEQSNPKWSP 445 >gi|54294385|ref|YP_126800.1| TolB protein [Legionella pneumophila str. Lens] gi|67461924|sp|Q5WWJ9|TOLB_LEGPL RecName: Full=Protein tolB; Flags: Precursor gi|53754217|emb|CAH15694.1| TolB protein [Legionella pneumophila str. Lens] gi|307610269|emb|CBW99833.1| TolB protein [Legionella pneumophila 130b] Length = 419 Score = 346 bits (887), Expect = 6e-93, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 192/438 (43%), Gaps = 23/438 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 N I+L LLL + + S + IA F D ++ V+ Sbjct: 2 FNRIISLFLLLFTGQVIA-------LDLELTQGINSALPIAINSF-GSDAAAQEIGNVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F +IS +S LGA +VTGRV + G +R+ V F L Sbjct: 54 NDLTISGQFKIIS------GPQGANSQSSVSTLRQLGADSVVTGRVNQVG-NRIEVSFTL 106 Query: 131 WD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D V + ++ K F + R +AH ISD++YQ +TGE+G F++RI ++S G Sbjct: 107 ADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRAGGRS 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S + I P +SPN + ++Y +++ + ++ + + Sbjct: 167 RYSLEVADADGHNPQSLLVSSEPI-MSPSWSPNGKSISYVSFEKKKA-EIFTVSVETGQ- 223 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + I +F + AP +S +G+ + + K IY VDL S + ++LT I+ Y Sbjct: 224 RRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRY 283 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++F S R G Q+Y + R++ + + ++P I Sbjct: 284 SPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARA-SYTPDMKHIVMLHREDR 342 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 +F IGV G L ++P+ SP+ R ++++ + + SID GR Sbjct: 343 QFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQDRGVLGIVSID--GRIRM 400 Query: 429 TLINTPAYASDPQWVGFM 446 L +P W ++ Sbjct: 401 RLPAREGDVQEPAWSPYL 418 >gi|52841801|ref|YP_095600.1| TolB colicin import protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|67461928|sp|Q5ZV69|TOLB_LEGPH RecName: Full=Protein tolB; Flags: Precursor gi|52628912|gb|AAU27653.1| TolB colicin import protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 419 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 114/438 (26%), Positives = 192/438 (43%), Gaps = 23/438 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 N I+L LLL + + S + IA F + ++ V+ Sbjct: 2 FNRIISLFLLLFTGQVIA-------LDLELTQGINSALPIAINSF-GSNAAAQEIGNVIE 53 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S F +IS +S LGA +VTGRV + G +R+ V F L Sbjct: 54 NDLTISGQFKIIS------GPQGANSQSSVSTLRQLGADSVVTGRVNQVG-NRIEVSFTL 106 Query: 131 WD-VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D V + ++ K F + R +AH ISD++YQ +TGE+G F++RI ++S G Sbjct: 107 ADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQRNGGRS 166 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + SL V D DG N + L S + I P +SPN + ++Y +++ + ++ + + Sbjct: 167 RYSLEVADADGHNPQSLLVSSEPI-MSPSWSPNGKSISYVSFEKKKA-EIFTVSVETGQ- 223 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + I +F + AP +S +G+ + + K IY VDL S + ++LT I+ Y Sbjct: 224 RRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNSIDTEPRY 283 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++F S R G Q+Y + R++ + + ++P I Sbjct: 284 SPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARA-SYTPDMKHIVMLHREDR 342 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE- 428 +F IGV G L ++P+ SP+ R ++++ + + SID GR Sbjct: 343 QFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQDRGVLGIVSID--GRIRM 400 Query: 429 TLINTPAYASDPQWVGFM 446 L +P W ++ Sbjct: 401 RLPAREGDVQEPAWSPYL 418 >gi|58040119|ref|YP_192083.1| translocation protein TolB [Gluconobacter oxydans 621H] gi|67461870|sp|Q5FQB9|TOLB_GLUOX RecName: Full=Protein tolB; Flags: Precursor gi|58002533|gb|AAW61427.1| TolB protein [Gluconobacter oxydans 621H] Length = 453 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 153/435 (35%), Positives = 225/435 (51%), Gaps = 20/435 (4%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L L S ++ + A P+ I F + LG ++S V++ DL Sbjct: 30 LLATPLAAFAQSGAASGPGEAEITVDQARQEPIPIVVPNFGAG--LGEQISGVITSDLNG 87 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 + +F ++S P S P F + GA+ G +RVE RLWDV Sbjct: 88 TGLFKVMSGS------VPPGSTPDFSALKAQGARA--AVAGQAVGAGSVRVEMRLWDVLS 139 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 +Q+ G + +S ++WR+IAH I+D IY+ + GEKG F++RI +++ + L + Sbjct: 140 GQQLQGTAYTASNSNWRRIAHIIADVIYERMLGEKGYFDTRIAYIARTGPRHHQITRLAL 199 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 MD+DGAN R LT + + PRF+P + ++A+ +Y + RVYL D R + +G Sbjct: 200 MDQDGANERMLT-GGEWLTLTPRFNPVRDQIAFMSYANNRP-RVYLFDLASGRQ-QILGE 256 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSS 314 F + APRFS G ++S + DI+ VDL S A ++TN+ I+ S +SPD S Sbjct: 257 FAGISFAPRFSPTGGSVVLSATRGGGSDIFVVDLASRAKRQITNSNGAIDTSPCFSPDGS 316 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 QIVF SDR G QLY+M ++G KRIS Y PVWSP+GDLIAFT+ F++G Sbjct: 317 QIVFNSDRGGSPQLYIMSASGGAAKRISY-GSGQYGSPVWSPRGDLIAFTRIGSGGFSLG 375 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK-----KDGDTGSKLYSIDLNGRNET 429 VM DG+ ER+L + + T+ P+GR L F R+ S + +ID+ G NE Sbjct: 376 VMNPDGTGERILTQGFTVDGATFCPNGRVLAFCRQSASGAGGAGFASGIGTIDITGFNER 435 Query: 430 LINTPAYASDPQWVG 444 I ASDP W Sbjct: 436 PIRISTGASDPAWSP 450 >gi|169632714|ref|YP_001706450.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii SDF] gi|169795058|ref|YP_001712851.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii AYE] gi|184159156|ref|YP_001847495.1| translocation protein TolB [Acinetobacter baumannii ACICU] gi|213158279|ref|YP_002320330.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB0057] gi|215482607|ref|YP_002324799.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB307-0294] gi|239501026|ref|ZP_04660336.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB900] gi|301346653|ref|ZP_07227394.1| translocation protein TolB [Acinetobacter baumannii AB056] gi|301596452|ref|ZP_07241460.1| translocation protein TolB [Acinetobacter baumannii AB059] gi|332869633|ref|ZP_08438844.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013113] gi|332875984|ref|ZP_08443770.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6014059] gi|169147985|emb|CAM85848.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii AYE] gi|169151506|emb|CAP00269.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter baumannii] gi|183210750|gb|ACC58148.1| Periplasmic component of the Tol biopolymer transport system [Acinetobacter baumannii ACICU] gi|213057439|gb|ACJ42341.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB0057] gi|213987558|gb|ACJ57857.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii AB307-0294] gi|322509069|gb|ADX04523.1| tolB [Acinetobacter baumannii 1656-2] gi|323519050|gb|ADX93431.1| translocation protein TolB [Acinetobacter baumannii TCDC-AB0715] gi|332732680|gb|EGJ63912.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013113] gi|332735850|gb|EGJ66891.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6014059] Length = 426 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 102/422 (24%), Positives = 192/422 (45%), Gaps = 16/422 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 PT+ A + + A IA F + + L +V DL RS F S+ Sbjct: 18 SPLAPTAAFAQLHLEIAKAPDQAPKIAIVPFNNDNGL----YPIVETDLNRSGRFTSSSK 73 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + + + DW + G +VTG++ + V ++L+DV+ ++ ++ + Sbjct: 74 NL---PANAAINQIQASDWQAAGIPYVVTGQIKQTADG-FEVHYQLYDVQKQQYLLNELL 129 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + R+ H +SD IYQ++TG GDF+ RI +V + + + +L + D DG + Sbjct: 130 NVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPATPAERYTLQIADTDGEQPK 189 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + SRD I P ++P+ +K+AY +++ + +YL D + + +F+ + AP Sbjct: 190 TVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGT-REVLTSFKGLNGAPS 246 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +GK L + + +IY +DL + +R+TN I+ A Y+PD +F SDR G Sbjct: 247 FSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTEARYTPDGKAFIFTSDRGG 306 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQE 383 Q+Y KR++ + S G IA SG + + + + Sbjct: 307 SPQIYRYDFGNGSVKRLTFKGSFNARG-TLSADGKKIALVHRPSGSNYKVAIQDINTGIV 365 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 +L S ++P++SP+G+ ++++ ++ + + +GR L + +P W Sbjct: 366 NILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGRFRMNLPSEQGEVREPAW 423 Query: 443 VG 444 Sbjct: 424 AP 425 >gi|260556542|ref|ZP_05828760.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii ATCC 19606] gi|260409801|gb|EEX03101.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii ATCC 19606] Length = 426 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 103/422 (24%), Positives = 192/422 (45%), Gaps = 16/422 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 PT+ A + + A IA F + + L +V DL RS F S+ Sbjct: 18 SPLAPTAAFAQLHLEIAKAPDQAPKIAIVPFNNDNGL----YPIVETDLNRSGRFTSSSK 73 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + + + DW + G +VTG++ + V ++L+DV+ ++ ++ + Sbjct: 74 NL---PANAAINQIQASDWQAAGIPYVVTGQIKQTADG-FEVHYQLYDVQKQQYLLNELL 129 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + R+ H +SD IYQ++TG GDF+ RI +V + + + +L + D DG + Sbjct: 130 NVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPATPAERYTLQIADTDGEQPK 189 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + SRD I P ++P+ +K+AY +++ + +YL D + I +F+ + AP Sbjct: 190 TVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGT-REVITSFKGLNGAPS 246 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +GK L + + +IY +DL + +R+TN I+ A Y+PD +F SDR G Sbjct: 247 FSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTEARYTPDGKAFIFTSDRGG 306 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQE 383 Q+Y KR++ + S G IA SG + + + + Sbjct: 307 SPQIYRYDFGNGSVKRLTFKGSFNARG-TLSADGKKIALVHRPSGSNYKVAIQDINTGIV 365 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 +L S ++P++SP+G+ ++++ ++ + + +GR L + +P W Sbjct: 366 NILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGRFRMNLPSEQGEVREPAW 423 Query: 443 VG 444 Sbjct: 424 AP 425 >gi|299769115|ref|YP_003731141.1| translocation protein TolB [Acinetobacter sp. DR1] gi|298699203|gb|ADI89768.1| translocation protein TolB [Acinetobacter sp. DR1] Length = 426 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 108/439 (24%), Positives = 199/439 (45%), Gaps = 19/439 (4%) Query: 11 LNMKINLCLLLVLIGGF---FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +N L L LI PT+ A + + A IA F + + L S Sbjct: 1 MNTSRKHLLSLALITALSPVAPTTAFAQLYLEIAKAPDQAPKIAIVPFNNDNGL----SP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ + + DW + G +VTG++ + V Sbjct: 57 IVETDLNRSGRFTSSSKNL---PANAAINQIQASDWQAAGIPYVVTGQIKQTATG-FEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ ++ I+ + + R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQKQQYILNELLNVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPATA 172 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D Sbjct: 173 AERYTLQIADTDGEQPKTVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTG 230 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +F+ + AP FS +G+ L + + +IY +DL + +R+TN I+ A Sbjct: 231 T-REVLTSFKGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSAIDTEA 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 Y+PD +F SDR G Q+Y KR++ + S G IA Sbjct: 290 RYTPDGKSFIFTSDRGGSAQIYRYTFADGSVKRLTFKGSFNARG-TLSADGKKIALVHRP 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 SG + + + + +L S ++P++SP+G+ ++++ ++ + + +GR Sbjct: 349 SGSSYKVAIQDINTGITNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGR 406 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 407 FRMNLPSEQGEVREPAWAP 425 >gi|262373122|ref|ZP_06066401.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter junii SH205] gi|262313147|gb|EEY94232.1| tol-Pal system beta propeller repeat protein TolB [Acinetobacter junii SH205] Length = 427 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 103/437 (23%), Positives = 195/437 (44%), Gaps = 17/437 (3%) Query: 12 NMKINLCLLLVLIGG--FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV 69 + +L L V + A + + A IA F + + + +V Sbjct: 3 KTRKSLLALAVFTALSTVVSGTAFAQLHLEIAKAPEQAPKIAIIPFTNDNA----IYPIV 58 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL RS F S++ + + + DW + G +V G++ + V ++ Sbjct: 59 ENDLNRSGRFTSASRNL---PASASLNQIQASDWQNAGVPYVVVGQIKSINANSFEVHYQ 115 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+DV+ ++ ++ + + R+ H ISD IYQ++TG GDF+ RI +V + + Sbjct: 116 LYDVQKQQYLLNEVLTVPNSRIRQAGHMISDAIYQALTGIAGDFSGRIAYVLRNQATPAQ 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L + D DG + + SRD I P +SP+ +K+AY +++ + +YL D + Sbjct: 176 RYTLQIADTDGEQPKTVLSSRDPI-LSPTWSPDAKKIAYVSFETKRPA-IYLQDLATGQ- 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + +FR + AP FS +G+ L + +IY ++L + +R+TN I+ A Y Sbjct: 233 REVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLNTRQVKRMTNDSAIDTEARY 292 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SG 368 +PD +F SDR G Q+Y KR++ A S G IA SG Sbjct: 293 APDGKSFIFTSDRGGSPQIYRYSFEDGSVKRLTFKG-AFNARGTLSADGKKIALVHRPSG 351 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + + +L S ++P++SP+G+ ++++ ++ + + +GR Sbjct: 352 SSYKVALQDINTGITNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGRFR 409 Query: 429 -TLINTPAYASDPQWVG 444 L + +P W Sbjct: 410 MNLPSEQGEVREPAWAP 426 >gi|193078076|gb|ABO13011.2| tolerance to colicins E2 E, A, and K [Acinetobacter baumannii ATCC 17978] Length = 426 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 102/422 (24%), Positives = 192/422 (45%), Gaps = 16/422 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 PT+ A + + A IA F + + L +V DL RS F S+ Sbjct: 18 SPLAPTAAFAQLHLEIAKAPDQAPKIAIVPFNNDNGL----YPIVETDLNRSGRFTSSSK 73 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + + + DW + G +VTG++ + V ++L+DV+ ++ ++ + Sbjct: 74 NL---PANAAINQIQASDWQAAGIPYVVTGQIKQTADG-FEVHYQLYDVQKQQYLLNELL 129 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + R+ H +SD IYQ++TG GDF+ RI +V + + + +L + D DG + Sbjct: 130 NVPASRIRQAGHIVSDAIYQALTGIPGDFSGRIAYVLRNPATPAERYTLQIADTDGEQPK 189 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + SRD I P ++P+ +K+AY +++ + +YL D + + +F+ + AP Sbjct: 190 TVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGT-REVLTSFKGLNGAPS 246 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +GK L + + +IY +DL + +R+TN I+ A Y+PD +F SDR G Sbjct: 247 FSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTEARYTPDGKAFIFTSDRGG 306 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQE 383 Q+Y KR++ + S G IA SG + + + + Sbjct: 307 SPQIYRYDFGNGSVKRLTFKGSFNARG-TLSADGKKIALVHRPSGSNYKVAIQDINTGIV 365 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 +L S ++P++SP+G+ ++++ ++ + + +GR L + +P W Sbjct: 366 NILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGRFRMNLPSEQGEVREPAW 423 Query: 443 VG 444 Sbjct: 424 AP 425 >gi|258591276|emb|CBE67573.1| Protein tolB precursor [NC10 bacterium 'Dutch sediment'] Length = 450 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 118/448 (26%), Positives = 215/448 (47%), Gaps = 24/448 (5%) Query: 11 LNMKINLC---LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS------IDEL 61 ++++ + LL++ I S V ++IA F S ++L Sbjct: 1 MSIRRAIFAFGLLVITIPPLSALSAEEKYTVDIVRKEAQKITIAVVGFPSLKAISKGEDL 60 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFK---QKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 G + +++ DL+ + +F++I ++ NSL Q +V G++ Sbjct: 61 GAQAGAILTDDLKNTGIFDVIDPSFLPVEAAQVGFGQEKGLLPALNSLKVQAVVVGKLSS 120 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 G D L VE +L++V + + + GK++ P + R + H ++D+I +TGEKG +S+I Sbjct: 121 RG-DELVVEGQLFEVTNGEMLSGKRYAGDPRTLRAMVHRLADEIVFRLTGEKGIASSKIA 179 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +VS S + VMD D N +T I PR+SP+ +K+AY +Y D + Sbjct: 180 YVS----SVNGAKEIYVMDYDAYNPLLIT-GNHSINLSPRWSPDGKKIAYTSYRDHNP-D 233 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++++D R ++I + + +AP +S NGK + S+ +++ + + +LT Sbjct: 234 LFVVDLETGR-RQKISSNPGLNVAPAWSPNGKWLVFSMSSGTGTNLFLIRPDATGLRQLT 292 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I+IS S++P+ QIVF SDR G Q+Y+M G++ +R++ P WSP+G Sbjct: 293 QGPHIDISPSFAPNGRQIVFSSDRGGTPQIYLMDVEGTNIRRLTFGVGDYSVSPRWSPRG 352 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSK 417 D I F + F I ++ DG+ L +S N + P+WS GR L+F+ ++G Sbjct: 353 DKITFVGRTRGSFDIFLINPDGTGLTQLTSNSRNNEEPSWSADGRHLLFTSTRNGHR--H 410 Query: 418 LYSIDLNGRNETLINTPAYASD-PQWVG 444 LY + +G ++ + + W Sbjct: 411 LYVMKADGSDQRQLTKNGQENYLADWSP 438 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%) Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKL 418 IA+ I VM D L+ + ++ +P WSP G+ + ++ + D L Sbjct: 177 KIAYVSSVNGAKEIYVMDYDAYNPLLITGNHSINLSPRWSPDGKKIAYTSYR--DHNPDL 234 Query: 419 YSIDL-NGRNETLINTPA------YASDPQWVGF 445 + +DL GR + + + P ++ + +W+ F Sbjct: 235 FVVDLETGRRQKISSNPGLNVAPAWSPNGKWLVF 268 >gi|262278152|ref|ZP_06055937.1| tolerance protein to colicins E2 [Acinetobacter calcoaceticus RUH2202] gi|262258503|gb|EEY77236.1| tolerance protein to colicins E2 [Acinetobacter calcoaceticus RUH2202] Length = 426 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 108/439 (24%), Positives = 199/439 (45%), Gaps = 19/439 (4%) Query: 11 LNMKINLCLLLVLIGGFFP---TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +N L L LI P T+ A + + A IA F + + L S Sbjct: 1 MNTSRKHLLSLALITALSPLASTTAFAQLYLEIAKAPDQAPKIAIVPFNNDNGL----SP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ + + DW + G +VTG++ + V Sbjct: 57 IVETDLNRSGRFTSSSKNL---PANAAINQIQASDWQAAGIPYVVTGQIKQTATG-FEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ ++ I+ + + R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQKQQYILNELLNVPASRIRQAGHMVSDSIYQALTGIPGDFSGRIAYVLRNPATP 172 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D Sbjct: 173 AERYTLQIADTDGEQPKTVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTG 230 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +F+ + AP FS +G+ L + + +IY +DL + +R+TN I+ A Sbjct: 231 T-REVLTSFKGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSAIDTEA 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 Y+PD +F SDR G Q+Y KR++ + S G IA Sbjct: 290 RYTPDGKSFIFTSDRGGSAQIYRYTFADGSVKRLTFKGSFNARG-TLSADGKKIALVHRP 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 SG + + + + +L S ++P++SP+G+ ++++ ++ + + +GR Sbjct: 349 SGSSYKVAIQDINTGITNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGR 406 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 407 FRMNLPSEQGEVREPAWAP 425 >gi|15602832|ref|NP_245904.1| translocation protein TolB [Pasteurella multocida subsp. multocida str. Pm70] gi|32699718|sp|Q9CM71|TOLB_PASMU RecName: Full=Protein tolB; Flags: Precursor gi|12721292|gb|AAK03051.1| TolB [Pasteurella multocida subsp. multocida str. Pm70] Length = 432 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 187/444 (42%), Gaps = 22/444 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + + +L++ A V++ + + P+++ K+ ++++ Sbjct: 1 MKLVTRMWSILIVFFLAVLQPAQAEVRIVIDEGVDSARPIAVVPFKWNGPGSAPADIADI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S FN I + Q T+ + + W +LG +V G V + + Sbjct: 61 IAADLRHSGKFNPIPVNRMPQHPTSVSEV-NPEAWAALGIDAVVVGHVTP-ANGSFNIAY 118 Query: 129 RLWDV-----KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +L D + ++ + R AHT+SD++++ +TG +G F +RI ++ + Sbjct: 119 QLVDTIGATGTAGTVLTQNQYTVTAKWLRYGAHTVSDEVFEKLTGIRGAFRTRIAYIVQK 178 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G + V D DG N +++ Q L P +S + +K+AY +++++ V + Sbjct: 179 -HGGSQPYEVRVSDYDGFN-QFVVNRSAQPLMSPAWSHDGKKLAYVSFENKKSQLV--VQ 234 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 A K + +F AP FS +G R + KD ++IY ++L S +LT+ Sbjct: 235 DLGSGARKVVASFNGHNGAPAFSPDGSRLAFASSKDGVLNIYVMNLGSGQISQLTSGTGN 294 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N S+SPD IVF SDR G Q+Y M ++G +S + + + G I Sbjct: 295 NTEPSWSPDGQTIVFTSDRSGSPQVYQMSASGGGASLVSTGGRS--YSGQMTADGSAIIM 352 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I +L + P+ SP+G +I+S + G L + Sbjct: 353 ISRD----NIVKKDLASGSTEVLSSTFLDENPSISPNGIMIIYSSTQG--LGKVLQLVSA 406 Query: 424 NGRNE-TLINTPAYASDPQWVGFM 446 +GR + L P W ++ Sbjct: 407 DGRFKARLPGNDGQVKFPAWSPYL 430 >gi|255020130|ref|ZP_05292200.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] gi|254970423|gb|EET27915.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] Length = 424 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 116/434 (26%), Positives = 213/434 (49%), Gaps = 12/434 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + ++ + LL +G F+ + A + V + S + IA F V++V+ Sbjct: 1 MARRLWILLLTFGLGFFWNPAAQAALTVDVTKSVSSALPIAIPSFGPGLPGQPSVADVIR 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL S +F +++ S+ P + + W+ +GA L G KE V+ + Sbjct: 61 SDLSHSGLFRVLAPGSYPGDPHQPIEV-KASSWSGIGATGLAIGDTQKEANGNYVVQVYV 119 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++V+ +++ +++ SPA AH ++D IY++ TG+ G F +RI +V + + Sbjct: 120 YNVQTGQELAARRYTCSPAELHMTAHHVADLIYKTFTGKAGPFAARIAYVRQIGN----E 175 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 +L V + DG N + R + F P +SP+ +++AY TY D + +Y+ D + Sbjct: 176 YTLLVAESDGWNPHPVVRGRMPV-FSPVWSPDNRRLAYVTYHDARAI-IYVQDLATGQ-R 232 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + ++ AP FS +G+ + + A +I+ VDL + +LT+ IN S S++ Sbjct: 233 QAVAPAGEIVSAPAFSPDGRELAYARAEGGATNIFVVDLATGQRRQLTHGSAINTSPSWA 292 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD +VF SDR G Q+Y M S+G D R++ + PV+SP G IAF + Sbjct: 293 PDGRHLVFVSDRAGSPQIYSMDSDGGDVHRLTFSGNYNA-SPVYSPTGQDIAFIHRTDGV 351 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 +A+ VM+ DGS R+L N P+++ +G+ +++ ++ G L ++G+ + Sbjct: 352 YALAVMRADGSGMRVLDAQGNCDHPSFAGNGQMILYGTQRGGRK--VLAEASVDGKTLAV 409 Query: 431 I-NTPAYASDPQWV 443 + T S P W Sbjct: 410 LRGTAGEDSQPAWS 423 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 P +++I + + L V +S+G + + + F PVWSP +A+ + + Sbjct: 161 PFAARIAYVRQIGNEYTLLVAESDGWNPHPVVR-GRMPVFSPVWSPDNRRLAYVTYHDAR 219 Query: 371 FAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNE 428 I V Q + + + AP +SP GR L ++R + G T ++ +DL G+ Sbjct: 220 AIIYVQDLATGQRQAVAPAGEIVSAPAFSPDGRELAYARAEGGATN--IFVVDLATGQRR 277 Query: 429 TLINTPAYASDPQWVG 444 L + A + P W Sbjct: 278 QLTHGSAINTSPSWAP 293 >gi|260551455|ref|ZP_05825639.1| tolerance to colicins E2 [Acinetobacter sp. RUH2624] gi|260405449|gb|EEW98942.1| tolerance to colicins E2 [Acinetobacter sp. RUH2624] Length = 426 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 102/422 (24%), Positives = 191/422 (45%), Gaps = 16/422 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 PT+ A + + A IA F + + L +V DL RS F S+ Sbjct: 18 SPLAPTAAFAQLHLEIAKAPDQAPKIAIVPFNNDNGL----YPIVETDLNRSGRFTSSSK 73 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + + + DW G +VTG++ + V ++L+DV+ ++ ++ + Sbjct: 74 NL---PANAAINQIQASDWQVAGIPYVVTGQIKQTADG-FEVHYQLYDVQKQQYLLNELL 129 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + R+ H +SD IYQ++TG GDF+ RI +V + + + +L + D DG + Sbjct: 130 NVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPATPAERYTLQIADTDGEQPK 189 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + SRD I P ++P+ +K+AY +++ + +YL D + + +F+ + AP Sbjct: 190 TVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGT-REVLTSFKGLNGAPS 246 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +GK L + + +IY +DL + +R+TN I+ A Y+PD +F SDR G Sbjct: 247 FSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTEARYTPDGKAFIFTSDRGG 306 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQE 383 Q+Y KR++ + S G IA SG + + + + Sbjct: 307 SPQIYRYDFGDGSVKRLTFKGSFNARG-TLSADGKKIALVHRPSGSNYKVAIQDINTGIV 365 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 +L S ++P++SP+G+ ++++ ++ + + +GR L + +P W Sbjct: 366 NILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGRFRMNLPSEQGEVREPAW 423 Query: 443 VG 444 Sbjct: 424 AP 425 >gi|293609864|ref|ZP_06692166.1| hypothetical protein HMPREF0013_02014 [Acinetobacter sp. SH024] gi|292828316|gb|EFF86679.1| hypothetical protein HMPREF0013_02014 [Acinetobacter sp. SH024] gi|325123092|gb|ADY82615.1| tolerance to colicins E2, E, A, and K, required for OM integrity [Acinetobacter calcoaceticus PHEA-2] Length = 426 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 109/439 (24%), Positives = 198/439 (45%), Gaps = 19/439 (4%) Query: 11 LNMKINLCLLLVLIGGFFP---TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 +N L L LI P T+ A + + A IA F + + L Sbjct: 1 MNTSRKHLLSLALITALSPIASTTAFAQLYLEIAKAPDQAPKIAIVPFTNDNGL----YP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F S++ + + DW + G +VTG++ + V Sbjct: 57 IVETDLNRSGRFTSSSKNL---PANAAINQIQASDWQAAGIPYVVTGQIKQTATG-FEVH 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ ++ I+ + A R+ H +SD IYQ++TG GDF+ RI +V + + Sbjct: 113 YQLYDVQKQQYILNELLNVPAARIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPATP 172 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D Sbjct: 173 AERYTLQIADTDGEQPKTVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTG 230 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + +FR + AP FS +G+ L + + +IY +DL + +R+TN I+ A Sbjct: 231 T-REVLTSFRGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSAIDTEA 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 Y+PD +F SDR G Q+Y KR++ + S G IA Sbjct: 290 RYTPDGKSFIFTSDRGGSAQIYRYTFADGSVKRLTFKGSFNARG-TLSADGKKIALVHRP 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 SG + + + + +L S ++P++SP+G+ ++++ ++ + + +GR Sbjct: 349 SGSSYKVAIQDINTGITNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGR 406 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 407 FRMNLPSEQGEVREPAWAP 425 >gi|213649746|ref|ZP_03379799.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 373 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 171/381 (44%), Gaps = 11/381 (2%) Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S FN + + Q+ + + W++LG ++ G V V + Sbjct: 1 MAADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAY 59 Query: 129 RLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + + + R HT SD++++ +TG KG F +RI +V ++ Sbjct: 60 QLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-G 118 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L V D DG N +++ Q L P +SP+ K+AY T++ ++ T Sbjct: 119 GQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLA 175 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + A +++ +F AP FS +G + ++ K ++++Y +DL S ++T+ N Sbjct: 176 NGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRSNNTE 235 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ PDS + F SD+ G+ Q+Y M NG +RI+ + + D S G + Sbjct: 236 PTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADVSSDGKFMVMVSS 294 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + I ++L + P+ +P+G +I+S + GS L + +GR Sbjct: 295 NNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--MGSVLNLVSTDGR 352 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 353 FKARLPATDGQVKSPAWSPYL 373 >gi|319940885|ref|ZP_08015224.1| tol-Pal system beta propeller repeat protein TolB [Sutterella wadsworthensis 3_1_45B] gi|319805767|gb|EFW02548.1| tol-Pal system beta propeller repeat protein TolB [Sutterella wadsworthensis 3_1_45B] Length = 434 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 100/435 (22%), Positives = 186/435 (42%), Gaps = 14/435 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 + L + G A +++ + + IA F +EV++ DL Sbjct: 11 RRTLLGAGIAAGALSACPAFADLRIEITGVGANQIPIAIQPFQGASAAPTDPAEVIAADL 70 Query: 74 QRSDVFNLIS--QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 +RS F IS Q++ + + P+ + + V V G V R V + Sbjct: 71 ERSGAFRRISVTQEASAENLEKPEGLAAAGKAGAA---VYVVGAVQALSDGRWDVRCLFY 127 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 D +Q+ + R AH +D IY +TGE F S+I +V++ + Sbjct: 128 DAVSGEQLDSIGVSAGKDLLRMAAHRCADRIYTRLTGEGAMFASQIAYVAQ---LAKRRY 184 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + D DG R S + I+ P +SP+ +++AY ++++ + VY+ + R + Sbjct: 185 ELIIADSDGGVPRTALQSPEPII-SPTWSPDGRQLAYVSFEERKPI-VYVHELSTGR-RR 241 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 ++ NFR AP +S +G+ +++ +D IY ++ + +R T + I+ YS Sbjct: 242 KVANFRGNNSAPAWSPDGRELAVALSRDGLTQIYRINADGSGLKRFTQSYGIDTEPVYSK 301 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F SDR G Q+Y G +R++ + P SP G +A+ ++ Sbjct: 302 DGRWIYFTSDRGGTPQIYRQPVAGGAAERVTFGSSYA-ISPDISPDGMRMAYISRIDAEY 360 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + VM Q+ L+ + ++P+++P+GR L+++ + G S D R T + Sbjct: 361 RLAVMDLSTGQDMLVTNTNRDESPSFAPNGRFLVYATEVSGRGVLGTCSADA--RLTTRL 418 Query: 432 NTPAYASDPQWVGFM 446 +P W + Sbjct: 419 YGEGDIREPAWGPIL 433 >gi|332851094|ref|ZP_08433203.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013150] gi|332730258|gb|EGJ61583.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter baumannii 6013150] Length = 426 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 101/422 (23%), Positives = 191/422 (45%), Gaps = 16/422 (3%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 PT+ A + + A IA F + + L +V DL RS F S+ Sbjct: 18 SPLAPTAAFAQLHLEIAKAPDQAPKIAIVPFNNDNGL----YPIVETDLNRSGRFTSSSK 73 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + + + DW + G +VTG++ + V ++L+DV+ ++ ++ + Sbjct: 74 NL---PANAAINQIQASDWQAAGIPYVVTGQIKQTADG-FEVHYQLYDVQKQQYLLNELL 129 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + R+ H +SD IYQ++TG GDF+ RI +V + + + +L + D DG + Sbjct: 130 NVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYVLRNPATPAERYTLQIADTDGEQPK 189 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + SRD I P ++P+ +K+AY +++ + +YL D + + +F+ + AP Sbjct: 190 TVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLSTGT-REVLTSFKGLNGAPS 246 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +GK L + + +IY +DL + +R+TN I+ A Y+PD +F SD G Sbjct: 247 FSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDTEARYTPDGKAFIFTSDSGG 306 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQE 383 Q+Y KR++ + S G IA SG + + + + Sbjct: 307 SPQIYRYDFGNGSVKRLTFKGSFNARG-TLSADGKKIALVHRPSGSNYKVAIQDINTGIV 365 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQW 442 +L S ++P++SP+G+ ++++ ++ + + +GR L + +P W Sbjct: 366 NILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGRFRMNLPSEQGEVREPAW 423 Query: 443 VG 444 Sbjct: 424 AP 425 >gi|39995136|ref|NP_951087.1| tolB protein [Geobacter sulfurreducens PCA] gi|67461990|sp|Q74H67|TOLB_GEOSL RecName: Full=Protein tolB; Flags: Precursor gi|39981898|gb|AAR33360.1| tolB protein [Geobacter sulfurreducens PCA] gi|298504166|gb|ADI82889.1| TolB-related biopolymer transport periplasmic beta-propeller repeat protein [Geobacter sulfurreducens KN400] Length = 432 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 120/440 (27%), Positives = 215/440 (48%), Gaps = 19/440 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSID-----ELGGKV 65 +++I LL +L+ P IH+ V ++ +++A ++ L V Sbjct: 3 HVRIFATLLALLVISVTPAVIHSEDVYREVTASGAHNLTLAVDNPRNLGGADDAALARDV 62 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +EV+ D+ + F++++ + W + G +LV G D + Sbjct: 63 AEVLRFDMTLAGPFSVMAPPAGTSPGGIRPGEFDLDSWRNAGVDLLVKSGYTITG-DSVT 121 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 +EFRL++ +++ K++ + R+I HT SDDI Q++TGE+G F +I FVS Sbjct: 122 MEFRLYNATQGRELAAKRYTGKRSDLRRITHTFSDDIMQTMTGERGPFTGKIAFVSTESG 181 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + +MD DG N++ LT +R I P FSPN +++AY +Y + Sbjct: 182 N----KEIYLMDYDGHNVQRLTKNRS-INLNPDFSPNGRELAYTSYRRGNPD--LFRREI 234 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + R + + +S +GK+ +++ +D +IY++ RLT I++ Sbjct: 235 FTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDPRRLTTHQAIDV 294 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD +I F SDR GK Q+++M ++GSD +R++ + P WSP+GD + + + Sbjct: 295 SPAWSPDGKRIAFVSDRLGKPQVFIMNADGSDVRRLTTSGAYNV-SPRWSPKGDRLVYCR 353 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G F I + DG+ + L + + + P WSP GR L FS +DG G +Y + +G Sbjct: 354 QEGG-FQIYSIATDGTGDTRLTSEGSNEHPRWSPDGRFLTFSSTRDG--GEAIYVMRSDG 410 Query: 426 RNETLIN-TPAYASDPQWVG 444 +T + + AS P W Sbjct: 411 SGQTRVYRSKGKASHPTWSP 430 >gi|153820467|ref|ZP_01973134.1| tolB protein [Vibrio cholerae NCTC 8457] gi|126508988|gb|EAZ71582.1| tolB protein [Vibrio cholerae NCTC 8457] Length = 382 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 173/388 (44%), Gaps = 29/388 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L +L+LIG F +A +++ + P++I K+ +L VS V++ Sbjct: 1 MFKRLVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + + F W S+G L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQL 119 Query: 131 WDVKDRKQ---------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + K + R+ AH I+D +Y+ +TGE Sbjct: 120 VDIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ Q L P +SP+ Q +AY Sbjct: 180 RGAFLTRIAYVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL Sbjct: 238 SFQNGQA-EIYMMNIYSGK-REKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDL 295 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + +T+ N + PD ++F SDR GK Q+Y + +G + KR++ + Sbjct: 296 ATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNL 355 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 +P G + S F + Sbjct: 356 GGQ-ITPDGKFLVMVNRSDSGFNLAKQD 382 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 7/170 (4%) Query: 270 KRALISVQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 R V D+ Y + D + + +S ++SPD + + S + G+ Sbjct: 185 TRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQA 244 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 ++Y+M +++++ + P +SP G +A + M + + Sbjct: 245 EIYMMNIYSGKREKLTSFPRHN-GAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEV 303 Query: 387 VED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 SN P W P G+SLIF+ + G ++Y ++L+G + Sbjct: 304 TSGRSNNTEPFWHPDGKSLIFTSDRGGK--PQIYQVNLSGGETKRLTWQG 351 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 7/91 (7%) Query: 359 DLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDT 414 IA+ + + + + + DG ERL++ L +P WSP G++L + ++G Sbjct: 185 TRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQ- 243 Query: 415 GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +++Y +++ +G+ E L + P + P++ Sbjct: 244 -AEIYMMNIYSGKREKLTSFPRHNGAPRFSP 273 >gi|153824250|ref|ZP_01976917.1| conserved hypothetical protein [Vibrio cholerae B33] gi|126518227|gb|EAZ75452.1| conserved hypothetical protein [Vibrio cholerae B33] Length = 374 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 167/377 (44%), Gaps = 29/377 (7%) Query: 36 VKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 +++ + P++I K+ +L VS V++ DLQRS F+ + Q + Sbjct: 1 LELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQRSGKFSPVPTSKMPQTPYS 60 Query: 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ--------------- 138 + + F W S+G L+TG + + + + ++L D+ + Sbjct: 61 EEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIVRGQLTQGQSKALSQDGQLV 119 Query: 139 ------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + K + R+ AH I+D +Y+ +TGE+G F +RI +V + Sbjct: 120 LSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAFLTRIAYVVVN-DKDPYPYQ 178 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + D DG N R + S+ Q L P +SP+ Q +AY ++ + +Y+M+ + ++ Sbjct: 179 LRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSFQNGQA-EIYMMNIYSGK-REK 235 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +F APRFS +GK + + K + +Y++DL + +T+ N + PD Sbjct: 236 LTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPD 295 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++F SDR GK Q+Y + +G + KR++ + +P G + S F Sbjct: 296 GKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQ-ITPDGKFLVMVNRSDSGFN 354 Query: 373 IGVMKKDGSQERLLVED 389 + + ++L + Sbjct: 355 LAKQDLETGAMQILTKT 371 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 7/170 (4%) Query: 270 KRALISVQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 R V D+ Y + D + + +S ++SPD + + S + G+ Sbjct: 162 TRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQA 221 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 ++Y+M +++++ + P +SP G +A + M + + Sbjct: 222 EIYMMNIYSGKREKLTSFPRHN-GAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEV 280 Query: 387 VED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 SN P W P G+SLIF+ + G ++Y ++L+G + Sbjct: 281 TSGRSNNTEPFWHPDGKSLIFTSDRGGK--PQIYQVNLSGGETKRLTWQG 328 >gi|226952117|ref|ZP_03822581.1| protein TolB precursor [Acinetobacter sp. ATCC 27244] gi|226837145|gb|EEH69528.1| protein TolB precursor [Acinetobacter sp. ATCC 27244] Length = 427 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 102/439 (23%), Positives = 195/439 (44%), Gaps = 15/439 (3%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 E+ + + I P + A +++ A IA F + + + Sbjct: 1 MEKTRKHLIAIAVFTAISTAIPVTTFAQLQLEIAKAPEKAPKIAIVPFTNDNA----IYP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F SQ+ T + + DW + G +V G+ + + Sbjct: 57 IVESDLNRSGRFTSASQNL---PATASMNQIQAGDWQNAGVPYVVVGQSKAINANTFEIH 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ ++ ++ + R+ H ISD IYQ++TG GDF+ RI +V + + Sbjct: 114 YQLYDVQKQQYLLNEVLTVPAGRVRQAGHMISDAIYQALTGIPGDFSGRIAYVLRNQANP 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D Sbjct: 174 AQRYTLQIADTDGEQPKTVLSSRDPI-LSPTWTPDAKKIAYVSFETKRPA-IYLQDLATG 231 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + + +FR + AP FS +G+ L + +IY ++L + +R+TN I+ A Sbjct: 232 Q-REVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLNTRQVQRMTNDTAIDTEA 290 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 YSPD +F SDR G Q+Y +R++ A S G +A Sbjct: 291 RYSPDGKSFIFTSDRGGSPQIYRYTFADKSVRRLTFRG-AFNARGTLSADGKRLALVHRP 349 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 SG + + + + +L S ++P++SP+G+ ++++ ++ + + +GR Sbjct: 350 SGSNYKVALQDINTGITNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGR 407 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 408 FRMNLPSEQGEVREPAWAP 426 >gi|213019077|ref|ZP_03334884.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995186|gb|EEB55827.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 427 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 146/441 (33%), Positives = 223/441 (50%), Gaps = 28/441 (6%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSE 67 N+ L++ I F P S A + V +N + + +K +EL +++ Sbjct: 8 NLMKLFVQLVLFISLFIPYSTKAVLYVDIKKSNIGNIDLVVSKCACKTEVENELSESITK 67 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V+ +L +FN+ + + W S +VT + + L + Sbjct: 68 VIETNLSNCGLFNV-------------KRDAKVESWKS---DTVVTISLSEVSNRNLELS 111 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 FRL D ++++ + WRKI+H +SD I+ + GEKG FN++I +++E S Sbjct: 112 FRLSDSFTNRELLTQSVVFLAKDWRKISHLVSDLIHDRLIGEKGHFNTKITYIAEEKDSN 171 Query: 188 IIK-NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + VM++DG+NI+YLT ++ + PRFSPN + + Y +Y + + + Sbjct: 172 YKSVRKIAVMNQDGSNIKYLTNG-EKFVSTPRFSPNGKGIVYISYTNGKSYII--LKNLK 228 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D I F +I APRFS +GK IS +I S+DL S T+++T I+ S Sbjct: 229 DNTESIISAFEGVISAPRFSPDGKSLFISHSLSGETNILSLDLSSKRTKKITKGSAISTS 288 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSN--GSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S SPD +VF SD G +QLY++ KRIS Y PVWSP+GDLIAFT Sbjct: 289 PSLSPDQKYMVFSSDISGSQQLYIIDFTKKSKKPKRISF-GNGRYATPVWSPKGDLIAFT 347 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K KF IGVMK DG +ERLL E +++P W P+GR +IF+ + + SKLY +DL Sbjct: 348 KIQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFT-NAESPSNSKLYLVDLV 406 Query: 425 GRNETLINTPAYASDPQWVGF 445 +N+ ++ TP AS P W F Sbjct: 407 KKNQKMVFTPTNASLPDWSYF 427 >gi|294648349|ref|ZP_06725857.1| TolB protein [Acinetobacter haemolyticus ATCC 19194] gi|292825761|gb|EFF84456.1| TolB protein [Acinetobacter haemolyticus ATCC 19194] Length = 427 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 102/439 (23%), Positives = 195/439 (44%), Gaps = 15/439 (3%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSE 67 E+ + + I P + A +++ A IA F + + + Sbjct: 1 MEKTRKHLIAIAVFTAISTTIPMTTFAQLQLEIAKAPEKAPKIAIVPFTNDNA----IYP 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V DL RS F SQ+ T + + DW + G +V G+ + + Sbjct: 57 IVESDLNRSGRFTSASQNL---PATASMNQIQASDWQNAGVPYVVVGQSKAINANTFEIH 113 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++L+DV+ ++ ++ + R+ H ISD IYQ++TG GDF+ RI +V + + Sbjct: 114 YQLYDVQKQQYLLNEVLTVPAGRVRQAGHMISDAIYQALTGIPGDFSGRIAYVLRNQANP 173 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D Sbjct: 174 AQRYTLQIADTDGEQPKTVLSSRDPI-LSPTWTPDAKKIAYVSFETKRPA-IYLQDLATG 231 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + + + +FR + AP FS +G+ L + +IY ++L + +R+TN I+ A Sbjct: 232 Q-REVLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLNTRQVQRMTNDTAIDTEA 290 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 YSPD +F SDR G Q+Y +R++ A S G +A Sbjct: 291 RYSPDGKSFIFTSDRGGSPQIYRYTFADKSVRRLTFRG-AFNARGTLSADGKRLALVHRP 349 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 SG + + + + +L S ++P++SP+G+ ++++ ++ + + +GR Sbjct: 350 SGSSYKVALQDINTGITNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTDGR 407 Query: 427 NE-TLINTPAYASDPQWVG 444 L + +P W Sbjct: 408 FRMNLPSEQGEVREPAWAP 426 >gi|222054198|ref|YP_002536560.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. FRC-32] gi|221563487|gb|ACM19459.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. FRC-32] Length = 425 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 120/436 (27%), Positives = 208/436 (47%), Gaps = 17/436 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVV 69 MK L+++L +++V ++IA +S EL ++++ Sbjct: 1 MKKFFILIMLLCLPGLNL-AQDYLEVTAPGNRQPQLAIAPPVPLSGTHNAELDKTITDIF 59 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 + DL + F ++ + + W + GA +LV I G + +EFR Sbjct: 60 AFDLTLAGQFTVMPSPPGETRTGIRSGEFDLAPWQAAGANLLVKSGYIDNGA-TITMEFR 118 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +DV K+++ K+F RKI H S++I + TGE G F + FVS + + Sbjct: 119 FFDVSRGKELVVKRFTGKRTDQRKIVHMFSNEILSATTGETGPFTGKTAFVSTASGN--- 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +MD DG N++ LT + I P FSP+ +++ Y +Y + +Y + Sbjct: 176 -KEIYLMDYDGYNVQRLTKNGS-INLNPDFSPSGKELIYTSYKRRNP-DLYRRELLTGAE 232 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 RI + + + +S +G R +++ KD +IY++ RLT I++S ++ Sbjct: 233 A-RISSHPGINVTGAWSPDGTRIALAMSKDGNSEIYTISKDGKQVVRLTKNEAIDVSPAW 291 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD S+I F SDR GK Q++VM ++GS R++ + P WSP+G+ IA+ + G Sbjct: 292 SPDGSRIAFVSDRLGKPQIFVMNADGSHVTRLTTSGTYNV-SPRWSPKGNTIAYCRQEGG 350 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 F I V+ DGS + L D + + P WSP GR ++FS + G G +Y + +G + Sbjct: 351 -FQIHVINVDGSNDIKLTSDGSNEHPRWSPDGRFIVFSSSRAGKEG--IYVMRNDGTGQV 407 Query: 430 LINTPAYA-SDPQWVG 444 ++ + A S P W Sbjct: 408 RVSRGSSADSHPTWSP 423 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 P + + F S G +++Y+M +G + +R++++ + +P +SP G + +T + Sbjct: 161 PFTGKTAFVSTASGNKEIYLMDYDGYNVQRLTKNGSINL-NPDFSPSGKELIYTSYKRRN 219 Query: 371 FAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR--- 426 + + G++ R+ WSP G + + KDG S++Y+I +G+ Sbjct: 220 PDLYRRELLTGAEARISSHPGINVTGAWSPDGTRIALAMSKDG--NSEIYTISKDGKQVV 277 Query: 427 ----NETLINTPAYASDPQWVGFM 446 NE + +PA++ D + F+ Sbjct: 278 RLTKNEAIDVSPAWSPDGSRIAFV 301 >gi|332534221|ref|ZP_08410066.1| TolB protein precursor [Pseudoalteromonas haloplanktis ANT/505] gi|332036301|gb|EGI72772.1| TolB protein precursor [Pseudoalteromonas haloplanktis ANT/505] Length = 389 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 178/396 (44%), Gaps = 31/396 (7%) Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 RS F + Q+ + D + W + G + ++ G V ++ R V + L DV Sbjct: 1 MRSGKFKPVDVAQMPQQPSK-DGEIDYASWVNKGVEAVLVGEVEQQTDGRYLVRYELVDV 59 Query: 134 KDRKQ--------------------IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 + + ++ + +R+ +H ISD IY+ +TGEKG F Sbjct: 60 IRGQITGGNTQMMSNGKLVKSQDHILEARESVIGESGFRRYSHRISDVIYEKLTGEKGAF 119 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++I +V + L V D DG N + L S++ L P +SPN K+AY T+++ Sbjct: 120 LTKIAYVIVR-DNEPKPYQLVVADYDGFNEQVLLRSKEP-LMSPAWSPNGTKLAYVTFEN 177 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQS 291 ++Y+ D + + I ++R + AP+FS +GK+ L+ + KD A ++Y +DL + Sbjct: 178 RQS-QIYIQDIYTGK-REIIASYRGINGAPQFSPDGKKLLLVLSKDKTGATEVYMLDLAT 235 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 RLTN I+ S+ P+ IVF S+R G Q+Y + +R++ D + + Sbjct: 236 RKETRLTNHRSIDTEPSWYPNGQDIVFTSERGGNAQIYKLNLKTGRSQRLTFDGDMNL-A 294 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +P G + + ++ + + ++L ++P+ +P+G +I+S + Sbjct: 295 GSITPDGKELVMVNRTNGQYHLAKKELATGAFQVLTRTRLDESPSIAPNGSMIIYSTLHN 354 Query: 412 GDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L S+D GR + L P W ++ Sbjct: 355 NKQVLALVSMD--GRFKARLPVLDGQVKAPAWSPYL 388 >gi|190570675|ref|YP_001975033.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|226705897|sp|B3CP06|TOLB_WOLPP RecName: Full=Protein tolB; Flags: Precursor gi|190356947|emb|CAQ54333.1| Protein tolB precursor [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 418 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 148/440 (33%), Positives = 225/440 (51%), Gaps = 29/440 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEV 68 MK+ + L+L I F P S A + V +N + + +K +EL +++V Sbjct: 1 MKLFVQLVL-FISLFIPYSTKAVLYVDIKKSNIGNIDLVVSKCACKTEVENELSESITKV 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + +L +FN+ + + W S +VT + + L + F Sbjct: 60 IETNLSNCGLFNV-------------KRDAKVESWKS---DTVVTISLSEVSNRNLELSF 103 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RL D ++++ + WRKI+H +SD I+ + GEKG FN++I +++E S Sbjct: 104 RLSDSFTNRELLTQSVVFLAKDWRKISHLVSDLIHDRLIGEKGHFNTKITYIAEEKDSNY 163 Query: 189 IK-NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + VM++DG+NI+YLT ++ + PRFSPN + + Y +Y + + + D Sbjct: 164 KSVRKIAVMNQDGSNIKYLTNG-EKFVSTPRFSPNGKGIVYISYTNGKSYII--LKNLKD 220 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 I F +I APRFS +GK IS +I S+DL S T+++T I+ S Sbjct: 221 NTESIISAFEGVISAPRFSPDGKSLFISHSLSGETNILSLDLSSKRTKKITKGSAISTSP 280 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSN--GSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SPD +VF SD G +QLY++ KRIS Y PVWSP+GDLIAFTK Sbjct: 281 SLSPDQKYMVFSSDISGSQQLYIIDFTKKSKKPKRISF-GNGRYATPVWSPKGDLIAFTK 339 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 KF IGVMK DG +ERLL E +++P W P+GR +IF+ + + SKLY +DL Sbjct: 340 IQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFT-NAESPSNSKLYLVDLVK 398 Query: 426 RNETLINTPAYASDPQWVGF 445 +N+ ++ TP AS P W F Sbjct: 399 KNQKMVFTPTNASLPDWSYF 418 >gi|165975760|ref|YP_001651353.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226705862|sp|B0BT52|TOLB_ACTPJ RecName: Full=Protein tolB; Flags: Precursor gi|165875861|gb|ABY68909.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 426 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 107/441 (24%), Positives = 184/441 (41%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +K ++ +I FF ++ A V ++ + IA F + + V ++ Sbjct: 1 MKLKSRFTSIIGVITLFFSQTVTAESDVVISVDEGVSMAQPIAVVPFKANGGVPADVGQI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S F + + + + + Q W +G +V G+V G V + Sbjct: 61 IADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVDSVVVGQVTPTGGG-YNVAY 118 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + F A R+ AHT+SD +++ IT +G F ++I +V + VS Sbjct: 119 QLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SP+ ++AY T++++ +V + D R Sbjct: 179 ---SYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHDLRS 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + R AP FS +G R + +D +DIY V +LT N Sbjct: 234 GS-RRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTANAGNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S I F SDR G Q+Y M +G + SY V S +LI Sbjct: 293 PSWSPDGSTIYFTSDRAGSPQVYRMGLSGGGASPM--GGSGSYNAKVSSDGKNLIMIA-- 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 349 ---GDKVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKANLPGAGGQFKFPAWSPYL 424 >gi|95929959|ref|ZP_01312699.1| TolB-like [Desulfuromonas acetoxidans DSM 684] gi|95133928|gb|EAT15587.1| TolB-like [Desulfuromonas acetoxidans DSM 684] Length = 433 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 115/441 (26%), Positives = 207/441 (46%), Gaps = 21/441 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFV-KVATNSANYSPVSIA---FTKFVSID-ELGGKVSE 67 MK L + LVL+ + ++ + + ++ F D L V + Sbjct: 1 MKKTLIMALVLLVSVLGAAGMTTAKEIVITTPGKQAIPMSLTRILPFQQRDTVLEETVDK 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITN---PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V+S DL S +F + +F + F W LGAQVL G G ++ Sbjct: 61 VLSADLDLSGLFEFVDPQAFLDDAGRMGLTSTEVNFTQWRLLGAQVLFKGGYRLNGS-QV 119 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + RL+DV R+ ++G + + R++AH+ +D I +++TG+ G FN+RI F+S Sbjct: 120 ELNLRLFDVISRRLLVGHNYRGQVSDVRRMAHSFADLILEALTGKSGAFNTRIAFISNQ- 178 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 L +M+ DG + + +T R ++ P FSP ++V + +Y + +Y + Sbjct: 179 ---SGHKELYLMESDGYDPKRITNHRS-LVLNPDFSPLGREVIFTSYRQGNP-DLYRKEI 233 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + RI ++ + ++ R+ +G+ +++ +D +IY L +R+TN+ I+ Sbjct: 234 YTGKEA-RISRYKGLNISGRYRHDGRELALTLSRDGNAEIYLESLSGQLHKRVTNSWAID 292 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SP Q+VF S+R+G L+V +R++ + + + P WSP G I F+ Sbjct: 293 VDPSWSPIGDQLVFVSNRQGNPNLFVADLIDGQVRRLTYNGKYNAT-PAWSPDGKRIVFS 351 Query: 365 KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + G F + + DG +ER L N + P WSP GR +++S G +Y + Sbjct: 352 RLEGGAFNLFSIGVDGKEERQLTFGAGNKEHPRWSPDGRFIVYSNDISGKKA--IYVMRA 409 Query: 424 NGRNETLINT-PAYASDPQWV 443 +G + I+T A S P W Sbjct: 410 DGSGQRRISTLDADCSHPAWS 430 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 5/177 (2%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + ++Y ++ +R+TN + ++ +SP +++F S R+G LY Sbjct: 170 TRIAFISNQSGHKELYLMESDGYDPKRITNHRSLVLNPDFSPLGREVIFTSYRQGNPDLY 229 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + RIS+ K + + G +A T I + G + + Sbjct: 230 RKEIYTGKEARISRYKGLNISG-RYRHDGRELALTLSRDGNAEIYLESLSGQLHKRVTNS 288 Query: 390 SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + P+WSP G L+F + G L+ DL +G+ L Y + P W Sbjct: 289 WAIDVDPSWSPIGDQLVFVSNRQG--NPNLFVADLIDGQVRRLTYNGKYNATPAWSP 343 >gi|240948555|ref|ZP_04752928.1| translocation protein TolB precursor [Actinobacillus minor NM305] gi|240297063|gb|EER47634.1| translocation protein TolB precursor [Actinobacillus minor NM305] Length = 426 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 110/441 (24%), Positives = 186/441 (42%), Gaps = 23/441 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 +N+K + +L ++ F + A V ++ + IA F D V+++ Sbjct: 1 MNLKSRITSILGIMTLLFSNVVRAESDVVISVDEGVSMAQPIAVVPFKGGDS--ADVAQI 58 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 VS DL+ S F + + + + + Q W +G ++V G+V G V + Sbjct: 59 VSDDLRNSGKFAPVERSKLPAQPGSAGEVVS-QQWTDIGVDMVVVGQVTPAGGGYYNVAY 117 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L DV + F A R+ AHT+SD +++ IT +G F ++I +V + VS Sbjct: 118 QLVDVLSNPAAVLTEGAFKVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS 177 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SP K+AY T++++ +V + D R Sbjct: 178 ---SYELRVSDYDGFNAFTVVQSKEP-LMSPEWSPEGSKLAYVTFENKKP-QVVVHDLRS 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + + AP FS +G + + +D ++IY V +LT N Sbjct: 233 G-ARRVVAALKGHNGAPAFSPDGSKIAFASNQDGELNIYVVGANGGTPSKLTANAGNNTE 291 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD I F SDR G Q+Y M S+G + K + S G + Sbjct: 292 PSWSPDGGSIYFTSDRSGSPQVYRMSSSGGGVSAVGGGKTYNA---KMSSDGKSLIMIAG 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K TG L + +GR Sbjct: 349 D----KVVKQDLAAGSTEVLSSTFLDESPSISPNGIMVIYSSTKG--TGKVLQLVSADGR 402 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 403 FKANLPGTGGQYKFPAWSPYL 423 >gi|152979449|ref|YP_001345078.1| translocation protein TolB [Actinobacillus succinogenes 130Z] gi|171704378|sp|A6VQ96|TOLB_ACTSZ RecName: Full=Protein tolB; Flags: Precursor gi|150841172|gb|ABR75143.1| Tol-Pal system beta propeller repeat TolB [Actinobacillus succinogenes 130Z] Length = 427 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 175/440 (39%), Gaps = 24/440 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 + + + VL V++ + IA F S + ++E+++ D Sbjct: 4 IARLMSMCAVLFFAINSAYADDEVRIVIDEGVEGARPIAVVPFKSNGSVPADIAEIITAD 63 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I + Q+ + + W SLG +V G+V G ++ ++L D Sbjct: 64 LRNSGKFNPIPVNQMPQQPGSASEV-TPDAWASLGIDAVVVGQVTASGNG-YQIAYQLVD 121 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 + P R AH +SD++++ +TG KG F +RI +V + Sbjct: 122 TVGASGNAGAVLAQNSLTVQPKWIRWGAHQVSDEVFEKMTGIKGAFRTRIAYVVQRNAG- 180 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L + D DG N +++ Q + P +SP+ Q++AY ++++ V + Sbjct: 181 --SHELRIADYDGFN-QFVVTRSSQPIMSPAWSPDGQRLAYVSFENRKSQLV--VHNLGS 235 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 K + FR AP FS +G R + +D ++IY ++ +LT N Sbjct: 236 GQRKVVAAFRGHNGAPAFSPDGSRLAFANNQDGLLNIYVMNSNGGHPTKLTGGAGNNTEP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S++ D +I+F SDR G Q+Y M S + + S G + Sbjct: 296 SWTQDG-RILFTSDRSGSPQVYSMS---SSGGGATLIGGGRSYSGQMSSDGKTLVMISGD 351 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + +L ++P+ SP+G +I+S + G L + +GR Sbjct: 352 ----NVVKYDTTTGTSEVLSSTFLDESPSISPNGIMIIYSSTQG--LGKVLQLVSADGRF 405 Query: 428 E-TLINTPAYASDPQWVGFM 446 + L + P W ++ Sbjct: 406 KARLPGSDGQVKFPAWSPYL 425 >gi|78224723|ref|YP_386470.1| WD-40-like beta propeller repeat-containing protein [Geobacter metallireducens GS-15] gi|119371044|sp|Q39PS9|TOLB_GEOMG RecName: Full=Protein tolB; Flags: Precursor gi|78195978|gb|ABB33745.1| WD40-like Beta Propeller [Geobacter metallireducens GS-15] Length = 429 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 118/439 (26%), Positives = 212/439 (48%), Gaps = 19/439 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFV---KVATNSANYSPVSIAFTKFVSIDELGG---KVS 66 M L +L+ ++ P +H+ +V + +++ + + + + + Sbjct: 1 MTRRLFILITIMLCLIPALLHSQEGYREVTAAGTHKLTLTVDSPRRLGGSDAPQVARETA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 E + D+ + F + + + F W G +LV G + + + Sbjct: 61 EALQFDMVLAGPFTVTAPSAAAASAGIRPGEFDFAPWRGAGVDLLVKSGYTVTG-NAMTM 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRL++V K+I+ K++ P R+IAHT SDDI ++TGE+G F +I FVS + Sbjct: 120 EFRLYNVTQGKEILAKRYTGRPGDVRRIAHTFSDDIMAALTGERGPFTGKIAFVSTRAGA 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 ++ +MD DG N++ LT +R I P FSP+ +++ + +Y + Sbjct: 180 ----KAIFLMDYDGHNVQQLTKNRS-INLNPDFSPSGKEIIFTSYRQGNPD--LFRRELF 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A RI ++R + +S +GK +++ KD +IY++ RLTNT I +S Sbjct: 233 TGAEARISSYRGINATGAWSPDGKTIALTLSKDGNSEIYTISRDGKNPHRLTNTSAIEVS 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++SPD +IVF SDR GK Q+++M ++G+ +R++ + P WSP+GD I +++ Sbjct: 293 PAWSPDVRKIVFVSDRLGKPQIFIMNADGTGVRRLTTSGNYNV-SPRWSPKGDRIVYSRQ 351 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 G F I + DG+ + L + + + P WSP GR + FS + G G +Y + +G Sbjct: 352 EGG-FQIYAINPDGTNDTRLTSEGSNEHPRWSPDGRFITFSSTRGGGEG--IYVMRADGS 408 Query: 427 NETLINTP-AYASDPQWVG 444 +T ++ S P W Sbjct: 409 GQTRVSGGKGRDSHPTWSP 427 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 14/228 (6%) Query: 135 DRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV----SGII 189 K+II + +P +R+ T ++ I+ +G + + S Sbjct: 210 SGKEIIFTSYRQGNPDLFRRELFTGAEA---RISSYRGINATGAWSPDGKTIALTLSKDG 266 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + + RDG N LT + I P +SP+ +K+ + + ++++M+ Sbjct: 267 NSEIYTISRDGKNPHRLTNT-SAIEVSPAWSPDVRKIVFVSDRLGKP-QIFIMNADGTG- 323 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +R+ + ++PR+S G R + S +++ IY+++ RLT+ + Sbjct: 324 VRRLTTSGNYNVSPRWSPKGDRIVYS-RQEGGFQIYAINPDGTNDTRLTSEGSNE-HPRW 381 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 SPD I F S R G E +YVM+++GS Q R+S + P WSP+ Sbjct: 382 SPDGRFITFSSTRGGGEGIYVMRADGSGQTRVS-GGKGRDSHPTWSPR 428 >gi|307262896|ref|ZP_07544520.1| hypothetical protein appser13_3210 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871801|gb|EFN03521.1| hypothetical protein appser13_3210 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 426 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 106/441 (24%), Positives = 183/441 (41%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +K ++ +I FF ++ A V ++ + IA F + + V ++ Sbjct: 1 MKLKSRFTSIIGVITLFFSQTVTAESDVVISVDEGVSMAQPIAVVPFKANGGVPADVGQI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S F + + + + + Q W +G +V G+V G V + Sbjct: 61 IADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVDSVVVGQVTPTGGG-YNVAY 118 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + F A R+ AHT+SD +++ IT +G F ++I +V + VS Sbjct: 119 QLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SP+ ++AY T++++ V + Sbjct: 179 ---SYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLAYVTFENKKAQVV--VHDLC 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + R AP FS +G R + +D +DIY V +LT N Sbjct: 233 SGSRRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTANAGNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S I F SDR G Q+Y M S+G + SY V S +LI Sbjct: 293 PSWSPDGSTIYFTSDRAGSPQVYRMGSSGGGASPM--GGSGSYNAKVSSDGKNLIMIA-- 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 349 ---GDKVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKANLPGAGGQFKFPAWSPYL 424 >gi|71892116|ref|YP_277848.1| hypothetical protein BPEN_348 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|119371035|sp|Q492W9|TOLB_BLOPB RecName: Full=Protein tolB; Flags: Precursor gi|71796222|gb|AAZ40973.1| TolB [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 453 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 106/441 (24%), Positives = 187/441 (42%), Gaps = 18/441 (4%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG------GKVSEVV 69 + L ++LI + ++ A + + + IA F + ++ ++ Sbjct: 17 KVSLSIMLIIFLWKPALLADMHIEITCGVNAAHPIAVIPFTCVSNQYNKSISIEDIASII 76 Query: 70 SKDLQRSDVFNLISQDSFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + DL+ S FN I + K T D IP F W LG ++V G V + + + Sbjct: 77 AADLRNSSKFNTIPVEYLPHKPTKVSDVIPTF--WEKLGINIIVLGTVHINYDESYIISY 134 Query: 129 RLWDVKDRKQII--GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 L D +I ++ R +AH IS++I++ +TG KG F +RI +V + + Sbjct: 135 HLIDTSSNPALIISENQYSVEKKWLRYVAHAISNEIFEKLTGIKGAFCTRIAYV-LRIHN 193 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L + D DG N + S + L P +SP+ +K+AY T+ V + Sbjct: 194 DHYPYELYISDYDGHNQISICRSTEP-LMSPAWSPDGKKIAYVTFASGHSELV--IQALN 250 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 I +F AP FS + K+ S+ K ++++Y +DL+S +LT N Sbjct: 251 TGLVNNIVSFPGHNGAPSFSPDCKKLAFSLSKTGSLNLYIMDLESGEITQLTKNRNNNTE 310 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+ PD+ I + SD+ G Q+Y + ++ +R+S ++ +P S G I Sbjct: 311 PSWFPDNQNIAYTSDQGGSPQIYKINVKTTEIQRLSWLHTSNQ-NPNVSSDGTFIIMVNR 369 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDGDTGSKLYSIDLNG 425 K I + QE +L + +P+ +P+ +++S KD T S L I ++G Sbjct: 370 HQGKQNIAKLNLLTGQEEILTDTLLADSPSIAPNNTMVLYSNINKDLTTKSNLELISIDG 429 Query: 426 RNETLINTP-AYASDPQWVGF 445 + I P W Sbjct: 430 HFKAHIQGDQGDIRFPTWSPL 450 >gi|167855025|ref|ZP_02477799.1| Dna-J like membrane chaperone protein [Haemophilus parasuis 29755] gi|167853873|gb|EDS25113.1| Dna-J like membrane chaperone protein [Haemophilus parasuis 29755] Length = 428 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 190/444 (42%), Gaps = 27/444 (6%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + + L +L ++G FF + A V+++ + IA F ++ + V+++ Sbjct: 1 MKLVSRLTSILGIVGLFFSVGVKAESDVRISIDQGVSMAQPIAVIPFKAMGGVPDDVAQI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S F + + S + ++ + + W ++G +V G+V G + + Sbjct: 61 IADDLRNSGKFTPLDRASLPAQPSSAAEV-NPEQWTNIGIDNVVVGQVSAVGGG-YNIAY 118 Query: 129 RLWDV-----KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +L D I F A R AHT+SD +++ +T +G F ++I +V + Sbjct: 119 QLVDTLGTSGAAGNVIAQGSFNVPAAQMRLGAHTVSDQVFEKLTQIRGAFRTKIAYVVQR 178 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 VS L V D DG N + S++ L P +SP+ K+AY T++++ +V + D Sbjct: 179 GVS---SYELRVSDYDGFNAFTIVKSKEP-LMSPEWSPDGSKLAYVTFENKKS-QVVVHD 233 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R A K IG+ R AP FS +G R + +D ++IY + + +LT+ Sbjct: 234 IRSG-ARKVIGSLRGHNGAPSFSPDGSRVAFASNQDGVLNIYVTGVGGGSPRQLTSNAGN 292 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N S+SPD I+F SDR G Q+Y M S+G I S G + Sbjct: 293 NTEPSWSPDGGYILFTSDRGGLPQVYQMSSSGGGASLI-----GGSGSGKISADGKNLIM 347 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I + ++P+ SP+G +I+S K +L + Sbjct: 348 VSGD----RIVRRDLVSGSTEAISSTFLDESPSISPNGTMVIYSSTKGVSKVLQL--VSA 401 Query: 424 NGRNE-TLINTPAYASDPQWVGFM 446 +GR + L P W ++ Sbjct: 402 DGRFKANLPGAGGQYKFPAWSPYL 425 >gi|116748201|ref|YP_844888.1| TolB domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697265|gb|ABK16453.1| TolB, N-terminal domain protein [Syntrophobacter fumaroxidans MPOB] Length = 457 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 110/435 (25%), Positives = 202/435 (46%), Gaps = 22/435 (5%) Query: 23 LIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSD 77 +G A ++ + N+ ++IA F +L ++ E ++ DL S Sbjct: 31 AVGMSRLAHAQAQRFELDLTNPNFQRIAIAIPDFKRQSSEQTQLAREMGETLAGDLDFSG 90 Query: 78 VFNLISQDSFKQKITNPDS---IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 +F + F + +F DW LGA +V G + +G +++E RL+DV Sbjct: 91 IFRPLDPKGFLEDPQTMGLNAPEIKFPDWRRLGADYMVRGNYLVQG-GTVKIEARLFDVA 149 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + +I K + WR + H +D+I ++TGE+G F+++I +V + + Sbjct: 150 AGRPVIAKAYEGDVRGWRAMIHRFADEILYALTGERGVFDTKIAYVQSMGKN----KEIF 205 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D DG+N + + P ++P ++AY +Y D + ++YL++ + D + + + Sbjct: 206 ISDFDGSNPVQASRDNS-LSLSPAWNPQMSQIAYVSYRDGNA-KIYLLNLQ-DGSSRLLC 262 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISASYSPDS 313 + M ++P + +++ +D DI+ V S ++L IN+S +SPD Sbjct: 263 GYPGMNISPAWRPGRPELAVTLTRDGNPDIFLVSASSGQILQKLVQGRSINVSPDWSPDG 322 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + F SD G Q+Y + ++R++ + P WSP+GD IA++ G + I Sbjct: 323 RSLAFVSDESGNPQIYAIDVGSGQKRRLTFSGTYN-TSPSWSPKGDFIAYSGTVGGRHHI 381 Query: 374 GVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +MK DGS R L + D + +PTWSP GR + FS + G GS ++ +NG + Sbjct: 382 FIMKTDGSGNRQLTDGDGDDVSPTWSPDGRMIAFSSTRQG--GSAIWVSSVNGIGVRRLT 439 Query: 433 TPAYASD-PQWVGFM 446 + P W M Sbjct: 440 RQGGGQELPDWSPRM 454 >gi|85858720|ref|YP_460922.1| tolB protein [Syntrophus aciditrophicus SB] gi|85721811|gb|ABC76754.1| tolB protein [Syntrophus aciditrophicus SB] Length = 496 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 204/451 (45%), Gaps = 16/451 (3%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV------SID 59 + + + + C + + F S+ V + +S + + IA F Sbjct: 47 GVRRGMGVLLLFCAVALCAMPFVVRSVWGKVYIDIDSPAFQKIPIAVADFAPLNGNQGHA 106 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRV 116 +L V K L + FN++++ + + ++ + +W SLGA+ L+ G Sbjct: 107 DLSSWFPGAVRKTLDLTGYFNILNRTGGPRDQSQTGAVQAQAAYGEWRSLGAEYLIQGGF 166 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 G +L EFRL D+ +Q++GK++ R + ++ +TG +G F++R Sbjct: 167 SSRGT-QLVAEFRLIDIVQGRQLMGKQYTGGFEDRRDMVIRFVQEVLSLLTGGEGFFDTR 225 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I FV S + DG ++ + ++ PR+SP+ + +A+++Y D Sbjct: 226 IAFVVRQGRSSSLHTVGFGSQIDGRDLARV-AGSPSLILSPRWSPDGRYLAFSSYRDGKP 284 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + + K+I +F+ + L +S +G+ L+++ KD +IY +D++S R Sbjct: 285 DIFVVSPSGSGL--KKIVSFQGLNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSGQVRR 342 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT I++S +SPD +I F S+ G Q+YVM ++G D +R++ + P WSP Sbjct: 343 LTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLTYSGNYN-TTPAWSP 401 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTG 415 +G IA+ G + I + +DG R L + + P+WSP GR L FS + G + Sbjct: 402 RGGKIAYEGKVGSGYQIFSIDEDGGNVRQLTSGAGDHEFPSWSPDGRFLTFSLRSGGRSR 461 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + + TL + P W + Sbjct: 462 INILNANTL-EVRTLYESTDRCLGPAWSPRL 491 >gi|46143830|ref|ZP_00133958.2| COG0823: Periplasmic component of the Tol biopolymer transport system [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207787|ref|YP_001053012.1| translocation protein TolB precursor [Actinobacillus pleuropneumoniae L20] gi|303249537|ref|ZP_07335744.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252545|ref|ZP_07338708.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245116|ref|ZP_07527209.1| hypothetical protein appser1_3260 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247295|ref|ZP_07529343.1| hypothetical protein appser2_2920 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251836|ref|ZP_07533737.1| hypothetical protein appser6_3560 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254072|ref|ZP_07535919.1| hypothetical protein appser9_3270 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256331|ref|ZP_07538114.1| hypothetical protein appser10_3380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258527|ref|ZP_07540264.1| hypothetical protein appser11_3280 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260770|ref|ZP_07542457.1| hypothetical protein appser12_3420 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166229973|sp|A3MZ21|TOLB_ACTP2 RecName: Full=Protein tolB; Flags: Precursor gi|126096579|gb|ABN73407.1| translocation protein TolB precursor [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648513|gb|EFL78706.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651611|gb|EFL81760.1| colicin tolerance protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854005|gb|EFM86217.1| hypothetical protein appser1_3260 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856139|gb|EFM88294.1| hypothetical protein appser2_2920 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860528|gb|EFM92540.1| hypothetical protein appser6_3560 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862997|gb|EFM94944.1| hypothetical protein appser9_3270 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865157|gb|EFM97057.1| hypothetical protein appser10_3380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867431|gb|EFM99282.1| hypothetical protein appser11_3280 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869496|gb|EFN01286.1| hypothetical protein appser12_3420 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 426 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 185/441 (41%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +K ++ +I FF ++ A V ++ + IA F + + V ++ Sbjct: 1 MKLKSRFTSIIGVITLFFSQTVTAESDVVISVDEGVSMAQPIAVVPFKANGGVPADVGQI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S F + + + + + Q W +G +V G+V G V + Sbjct: 61 IADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVDSVVVGQVTPTGGG-YNVAY 118 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + F A R+ AHT+SD +++ IT +G F ++I +V + VS Sbjct: 119 QLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SP+ ++AY T++++ +V + D R Sbjct: 179 ---SYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHDLRS 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + R AP FS +G R + +D +DIY V +LT N Sbjct: 234 GS-RRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTANAGNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S I F SDR G Q+Y M S+G + SY V S +LI Sbjct: 293 PSWSPDGSTIYFTSDRAGSPQVYRMGSSGGGASPM--GGSGSYNAKVSSDGKNLIMIA-- 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 349 ---GDKVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKANLPGAGGQFKFPAWSPYL 424 >gi|307249519|ref|ZP_07531506.1| hypothetical protein appser4_3300 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858374|gb|EFM90443.1| hypothetical protein appser4_3300 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 426 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 185/441 (41%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +K ++ +I FF ++ A V ++ + IA F + + V ++ Sbjct: 1 MKLKSRFTSIIGVITLFFSQTVTAESDVVISVDEGVSMAQPIAVVPFKTNGGVPADVGQI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S F + + + + + Q W +G +V G+V G V + Sbjct: 61 IADDLRNSGKFTPVERSKLPAQPGSAAEV-NSQQWTDIGVDSVVVGQVTPTGGG-YNVAY 118 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + F A R+ AHT+SD +++ IT +G F ++I +V + VS Sbjct: 119 QLVDTLSNPATVLAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SP+ ++AY T++++ +V + D R Sbjct: 179 ---SYELRVSDYDGYNAFTVVKSKEP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHDLRS 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + R AP FS +G R + +D +DIY V +LT N Sbjct: 234 GS-RRVVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTANAGNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S I F SDR G Q+Y M S+G + SY V S +LI Sbjct: 293 PSWSPDGSTIYFTSDRAGSPQVYRMGSSGGGASPM--GGSGSYNAKVSSDGKNLIMIA-- 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 349 ---GDKVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKANLPGAGGQFKFPAWSPYL 424 >gi|322514836|ref|ZP_08067855.1| tol-Pal system beta propeller repeat protein TolB [Actinobacillus ureae ATCC 25976] gi|322119218|gb|EFX91359.1| tol-Pal system beta propeller repeat protein TolB [Actinobacillus ureae ATCC 25976] Length = 426 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 186/441 (42%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +K L ++ +I FF + A V ++ + IA F + + V ++ Sbjct: 1 MKLKSRLTSVINVIALFFSNVVIAESDVVISVDEGVSMAQPIAVVPFKANGAVPADVGQI 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ DL+ S F + + + + + Q W +G +V G+V G V + Sbjct: 61 IADDLRNSGKFTPVERSRLPAQPGSAAEV-DSQQWTDIGVDSVVVGQVTPTGSG-YNVAY 118 Query: 129 RLWDVKDRKQ-IIGK-KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D + + F A R+ AHT+SD +++ IT G F ++I +V + VS Sbjct: 119 QLVDTLSNPAAVFAQGSFNVPAAQIRQGAHTVSDQVFEKITQILGAFRTKIAYVVQRGVS 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + SR+ L P +SP+ ++AY T++++ +V + D R Sbjct: 179 ---SYELRVSDYDGYNAFTVVKSREP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHDLRS 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + R AP FS +G R + +D +DIY V +LT N Sbjct: 234 GS-RRIVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTANAGNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S I F SDR G Q+Y M S+G + SY V S +LI Sbjct: 293 PSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPM--GGSGSYNAKVSSDGKNLIMIA-- 348 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 349 ---GDKVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L T P W ++ Sbjct: 404 FKANLPGTGGQFKFPAWSPYL 424 >gi|88800185|ref|ZP_01115753.1| TolB [Reinekea sp. MED297] gi|88777031|gb|EAR08238.1| TolB [Reinekea sp. MED297] Length = 434 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 96/441 (21%), Positives = 198/441 (44%), Gaps = 11/441 (2%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEV 68 + + ++ L+ ++ +P HA + + + +++ + L +V + Sbjct: 1 MTLLRSVRLMTAVLALCWPLLSHADLDIVVTKGYDTQTKIAVVPFFWEGSQALPERVDNL 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 ++ +L R+ F+ ++ + + D + F+DW L + L+ G + G ++ E Sbjct: 61 ITNNLVRTGRFDPLAPAKMLSQPYSEDGV-FFRDWRLLNQEFLIIGHLKPYGDAKVEAEI 119 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+DV ++++ R AH++SD Y+ +TG +G F++RI FV+ +VS Sbjct: 120 ALYDVVKNRRVVRVTQVVGVHQLRDFAHSLSDLFYERMTGVRGIFSTRIAFVTRKIVSQQ 179 Query: 189 -IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L + D DG R + S + I+ +S +VA+A D ++++ D R Sbjct: 180 QYDYRLQIADADGQRARTIYRSNEPIISV-AWSQKGDRVAFAN-KVGDRWKIFIQDLRSG 237 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + I + R AP FS +G+ + +IY + Q+ +ERLT +I+ Sbjct: 238 QVNS-ISDVRGYTSAPSFSPDGRYLAYVSSYRNSPEIYLYEFQTGKSERLTRNSYIDTEP 296 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+S DS IVF S++ G Q+Y +R++ + + +S G + F Sbjct: 297 SFSADSKSIVFTSEKGGSPQIYRYDLATKRTERLTFEGTQNLRA-RYSSDGKYLVFVHQI 355 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 +F I M R+L E + ++P+ +P+G L+++ ++ L + L+G+ Sbjct: 356 DGRFHIASMDLATRDIRVLTETNLDESPSIAPNGTMLVYATQRGNQG--VLAWVSLDGQV 413 Query: 428 ETLINTP-AYASDPQWVGFMD 447 + + +P W +++ Sbjct: 414 TNQMKSDFGDVLEPAWSPYLN 434 >gi|118574600|sp|Q2LRP7|TOLB_SYNAS RecName: Full=Protein tolB; Flags: Precursor Length = 452 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 204/451 (45%), Gaps = 16/451 (3%) Query: 6 FIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV------SID 59 + + + + C + + F S+ V + +S + + IA F Sbjct: 3 GVRRGMGVLLLFCAVALCAMPFVVRSVWGKVYIDIDSPAFQKIPIAVADFAPLNGNQGHA 62 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRV 116 +L V K L + FN++++ + + ++ + +W SLGA+ L+ G Sbjct: 63 DLSSWFPGAVRKTLDLTGYFNILNRTGGPRDQSQTGAVQAQAAYGEWRSLGAEYLIQGGF 122 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 G +L EFRL D+ +Q++GK++ R + ++ +TG +G F++R Sbjct: 123 SSRGT-QLVAEFRLIDIVQGRQLMGKQYTGGFEDRRDMVIRFVQEVLSLLTGGEGFFDTR 181 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I FV S + DG ++ + ++ PR+SP+ + +A+++Y D Sbjct: 182 IAFVVRQGRSSSLHTVGFGSQIDGRDLARV-AGSPSLILSPRWSPDGRYLAFSSYRDGKP 240 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + + K+I +F+ + L +S +G+ L+++ KD +IY +D++S R Sbjct: 241 DIFVVSPSGSGL--KKIVSFQGLNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSGQVRR 298 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT I++S +SPD +I F S+ G Q+YVM ++G D +R++ + P WSP Sbjct: 299 LTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLTYSGNYN-TTPAWSP 357 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTG 415 +G IA+ G + I + +DG R L + + P+WSP GR L FS + G + Sbjct: 358 RGGKIAYEGKVGSGYQIFSIDEDGGNVRQLTSGAGDHEFPSWSPDGRFLTFSLRSGGRSR 417 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + + TL + P W + Sbjct: 418 INILNANTL-EVRTLYESTDRCLGPAWSPRL 447 >gi|323143607|ref|ZP_08078284.1| Tol-Pal system beta propeller repeat protein TolB [Succinatimonas hippei YIT 12066] gi|322416670|gb|EFY07327.1| Tol-Pal system beta propeller repeat protein TolB [Succinatimonas hippei YIT 12066] Length = 426 Score = 328 bits (842), Expect = 9e-88, Method: Composition-based stats. Identities = 108/434 (24%), Positives = 198/434 (45%), Gaps = 15/434 (3%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 L G F ++ A + + IA F ++G V+ VVS DL RS Sbjct: 3 FLGAFGFGLFIMSNAQAALNIEITGGINEGRKIAVLPFTQTADVGIDVASVVSADLMRSG 62 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV---K 134 F+ +SQ + + + + GA+ +V G+V +G + +VEF L + Sbjct: 63 KFSPLSQSQIPTGVFDGEKV-NADMMAGTGAEAVVFGKVYPDG-NTYQVEFLLQSLVGEN 120 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + I + S + R+ AH +SD +Y+ + G+KG F +RI +V L Sbjct: 121 KGQVIAHYRGASGLNTMRQAAHRVSDRVYEKLVGQKGAFRTRIAYVVFR-HGAKFPYQLM 179 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 D DG N + S + I P +SP+ K+ Y ++++++ +++ D + RI Sbjct: 180 TADYDGFNEVPILKSTEPI-MTPSWSPDGTKIVYVSFENKNSA-IFIQDLNT-KQRTRIA 236 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F+ + +P +S +G + + + KD DIY D+ + A +R+T I+ ++S D Sbjct: 237 SFKGLNSSPAWSPDGSKIAMVLSKDGQPDIYYYDVNTRAVQRVTADPAIDTEPNWSADGR 296 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 Q+ F S+R G+ Q+Y N +R++ + + +I T+ +G + + Sbjct: 297 QLFFTSERGGRAQIYKFDFNTRTTERLTYQGQMNLSAEPIPGTNSVIMITRHNG--YRVA 354 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINT 433 M +DGS +L + ++P+ +P+G +I+S G G L + +GR L +T Sbjct: 355 RMDEDGSIY-MLTTSNLDESPSVAPNGSMVIYSTIYQGRKG--LAIVSADGRFRANLPST 411 Query: 434 PAYASDPQWVGFMD 447 S P W +D Sbjct: 412 SGEISSPAWGPLLD 425 >gi|160872498|ref|ZP_02062630.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsiella grylli] gi|159121297|gb|EDP46635.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsiella grylli] Length = 451 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 94/439 (21%), Positives = 188/439 (42%), Gaps = 16/439 (3%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--GKVSEVVSKDL 73 + + + + A + + + + IA F + +S+V+ DL Sbjct: 19 SFIYAITFSSLGWTQNAVAALNLELTQGVANRLPIAIVPFEQTETFSSEQDISQVIESDL 78 Query: 74 QRSDVFNLI--SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 S F + ++ + Q T + W + +V G++ G R RV + Sbjct: 79 NHSGQFKVTIANRQALPQPYTLDKISIPY--WRAQHIDDVVRGKITSMGHGRYRVYMDVV 136 Query: 132 DVKDRKQ--IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 V ++ + + R H +SD IY+ +TG +G F++RI ++ + Sbjct: 137 HVAQGRKQILTHTELTVRDTQLRAFGHHLSDLIYEKLTGVRGIFSTRIAYILVTRQKNHR 196 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + L S I P +S + +++AY +++ + + R+Y+ + Sbjct: 197 VYRLQIADMDGHNAKSLLTSTQPI-MSPSWSHDGKRIAYVSFE-KIMPRIYIQTIATGQ- 253 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNATERLTNTLFINISAS 308 + I ++ + AP +S + K+ +++ K+ A IY ++L++ +++ I+ + Sbjct: 254 RQVISDYPGINGAPAWSPDDKKLALALSKNSAAPKIYFINLENKRLSQVSFGFSIDTEPT 313 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +S D ++F SDR G Q+Y + NG +RI+ D + +SP G +I Sbjct: 314 WSQDGKSLLFTSDRGGGPQIYQINLNGKQLQRITFDGSYNARA-SYSPDGKMIVVLNRDQ 372 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + I V + + +P++SP+G+ ++F K D + S+D GR Sbjct: 373 GMYNIAVQDLEDDTLFSVTHSGYEASPSFSPNGQMILFESKPDKRGLLGMASVD--GRIN 430 Query: 429 TLINTP-AYASDPQWVGFM 446 + TP DP W F+ Sbjct: 431 CRLPTPEGDVQDPVWSPFL 449 >gi|82523888|emb|CAI78611.1| tolB protein [uncultured delta proteobacterium] Length = 437 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 208/424 (49%), Gaps = 20/424 (4%) Query: 34 AFVKVATNSANYSPVSIAFTKFVSIDELGG-----KVSEVVSKDLQRSDVFNLISQDSFK 88 A V + N+ + + F I+ L + +V+ D++ S F +I+ S+ Sbjct: 23 ARVYIDINAPVQRQIPVVVFPFKIINHLQNTHTITSLEKVLQDDIKYSSFFRIITPASYL 82 Query: 89 QKITNPDSIPR---FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 + F DW+++GA++++T + ++L +E RL+DV ++ ++G+++ Sbjct: 83 VDPKKQGIKKKEIIFSDWSTIGAELIITTGITVI-NNKLNIELRLFDVFSKELLLGRQYN 141 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + A RK HT D+I +++TG G+F ++I FV + ++ +D DG N Sbjct: 142 VTMAEARKSIHTFMDEIIKTMTGYPGNFLTKIAFVKSTAG----VKNIYQVDFDGYNPTP 197 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 +T + I P + N + Y +Y + +YL + R K I F+ + L+ + Sbjct: 198 ITNFKS-ITLGPSWGKNSNILFYISY-FKGNPDLYLHNLLTGRIYK-ISGFKGINLSASW 254 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S + S+ KD DIY ++ N RLT + I+IS ++SPD +I F SDR G Sbjct: 255 SDKHQMIATSLSKDGYPDIYLMNTNGNIISRLTRSNSIDISPTWSPDGKKIAFVSDRGGN 314 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQE- 383 +Y M SNG + +R++ + + P WSP+GD I FT F I ++ DGS Sbjct: 315 PNIYTMNSNGQNVRRLTFEGTYN-TSPDWSPKGDNIVFTGRDNLGYFQIYTIRPDGSGLC 373 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 ++ ++ + P+WSP GR +++S +G +G + + GR + LIN + P W Sbjct: 374 QITFNSADNEEPSWSPDGRFIVYSSTIEGKSGIYIMLFNGTGRRK-LINLNGEQTYPVWS 432 Query: 444 GFMD 447 +D Sbjct: 433 PRLD 436 >gi|257465021|ref|ZP_05629392.1| translocation protein TolB [Actinobacillus minor 202] gi|257450681|gb|EEV24724.1| translocation protein TolB [Actinobacillus minor 202] Length = 425 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 107/441 (24%), Positives = 184/441 (41%), Gaps = 24/441 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 +N+K + +L ++ F + A V ++ + IA F V+++ Sbjct: 1 MNLKSRITSVLGIMALLFSNVVRAESDVVISVDEGVSMAQPIAVVPFKGG--ASADVAQI 58 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 VS DL+ S F + + + + + Q W +G ++V G+V G V + Sbjct: 59 VSDDLRNSGKFTPVERSKLPAQPGSAGEVVS-QQWTDIGVDMVVVGQVTPAGGG-YNVAY 116 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L DV + F A R+ AHT+SD +++ IT +G F ++I +V + VS Sbjct: 117 QLVDVLSNPAAVLAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS 176 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SP K+AY T++++ +V + D R Sbjct: 177 ---SYELRVSDYDGFNAFTVVKSKEP-LMSPEWSPEGSKLAYVTFENKKP-QVVVHDLRS 231 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + + + AP FS +G + + +D ++IY VD +LT N Sbjct: 232 G-ARRVVAALKGHNGAPAFSPDGSKIAFASNQDGELNIYVVDANGGTPSKLTANAGNNTE 290 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD I F SDR G Q+Y M S+G + K + S G + Sbjct: 291 PSWSPDGGSIYFTSDRSGSPQVYRMSSSGGGASAVGGGKTYNA---KMSSDGKSLIMIAG 347 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 348 D----KVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSADGR 401 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 402 FKANLPGAGGQYKFPAWSPYL 422 >gi|222873073|gb|EEF10204.1| predicted protein [Populus trichocarpa] Length = 358 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 157/347 (45%), Gaps = 11/347 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 LL + A +V + + IA F + K+S ++ DL+RS F Sbjct: 23 LLAALASTPAIPALAQFRVEVTGVGLTQLPIAIAAFKGEGQAPQKISAIIQADLERSGQF 82 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + + + S P W A L G + + R V FRLWDV + + Sbjct: 83 RAVDTAGVQ---LDETSRPDVAMWRQKSADSLAVGSITRLADGRYDVRFRLWDVVKGQDL 139 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G+ F + R +AH ISD IY+ +TGEKG F++RI +V+++ + L V D D Sbjct: 140 GGQGFAVTTGDLRLVAHRISDYIYEKLTGEKGVFSTRIAYVTKAGSN----YRLWVADAD 195 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N + S + I+ P +SP ++AY +++ + VY+ D R + + NFR Sbjct: 196 GENAQSALSSPEPII-SPAWSPTGTQLAYVSFESRKPV-VYVHDVASGR-RRLVANFRGS 252 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 AP +S +G +++ +D +Y + Q RL + I+ ++S D I F Sbjct: 253 NSAPAWSPDGNSLAVTLSRDGGSQLYLISAQGGEPRRLMQSSGIDTEPNFSSDGRSIYFV 312 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 SDR G Q+Y + ++G +R++ + P SP G +A+ Sbjct: 313 SDRGGAPQIYKVPASGGSAERVTFTGNYN-ISPSVSPDGKWLAYVSR 358 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 77/185 (41%), Gaps = 11/185 (5%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + ++ D + ++ IS ++SP +Q+ + S K +Y Sbjct: 175 TRIAYVTKAGSNYRLWVADADGENAQSALSSPEPIISPAWSPTGTQLAYVSFESRKPVVY 234 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V ++R+ + S P WSP G+ +A T + ++ G + R L++ Sbjct: 235 VHDVASG-RRRLVANFRGSNSAPAWSPDGNSLAVTLSRDGGSQLYLISAQGGEPRRLMQS 293 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQ 441 S + P +S GRS+ F + G ++Y + +G + + +P+ + D + Sbjct: 294 SGIDTEPNFSSDGRSIYFVSDRGG--APQIYKVPASGGSAERVTFTGNYNISPSVSPDGK 351 Query: 442 WVGFM 446 W+ ++ Sbjct: 352 WLAYV 356 >gi|258545747|ref|ZP_05705981.1| TolB protein [Cardiobacterium hominis ATCC 15826] gi|258518992|gb|EEV87851.1| TolB protein [Cardiobacterium hominis ATCC 15826] Length = 425 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 117/431 (27%), Positives = 195/431 (45%), Gaps = 22/431 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ 74 + LCLLL T+ HA V+V + A + IA G K+ +++ DL Sbjct: 10 LGLCLLLPW------TAAHAQVEVNVSGAQVAARPIAILPVQGDP--GVKMDYIIASDLH 61 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 ++ +F + SF + +P ++ ++ W GA +V G + + F L DV Sbjct: 62 KTGLFQPLDPKSFPENPASPAAL-QYPAWKQAGADYVVMGMMQGGNAGQ----FVLNDVN 116 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV-SGIIKNSL 193 Q+ + A R++AH +D I +TG++G F +++ +V E G + SL Sbjct: 117 SASQLANENLH--DADARQLAHQAADWILYRLTGKRGVFGTQLAYVLEQGGAKGARRYSL 174 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D DGAN R + S + I P ++PN Q VA+ TY + V I + + Sbjct: 175 LVSDVDGANRREIYSSNEPI-LSPSWAPNGQAVAFVTYANHHAQVVIQ---NIGGGSRVV 230 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + AP FS +G ++ DIY ++L S A RLT+ I+ ++SPD Sbjct: 231 AQGDGISSAPAFSPDGNYLAFVQSENNNPDIYLLNLASGAKSRLTDHAAIDTEPAFSPDG 290 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + I F SDR G Q+Y M NG +R+ S + SP G + T+ SG + I Sbjct: 291 NYIYFTSDRSGSPQIYRMSRNGGGAERVVSGSGYSA-NSDLSPDGSSLVLTRQSGGGYQI 349 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 G + L + +++P+G+ +I++ K+ G + K+ + G +TL ++ Sbjct: 350 GTYDLASKRFDALTSGRLDEGASFAPNGQLIIYATKEGGRSVLKVIN-SKGGVAQTLSDS 408 Query: 434 PAYASDPQWVG 444 DP W Sbjct: 409 NGRLRDPAWGP 419 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 39/123 (31%), Gaps = 4/123 (3%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M R+G + S SP+ + ++ D R Sbjct: 304 QIYRMSRNGGGAERVV-SGSGYSANSDLSPDGSSLVLTRQS-GGGYQIGTYDLASKRFDA 361 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + F+ NG+ + + ++ + ++ + + L+++ ++ P Sbjct: 362 L--TSGRLDEGASFAPNGQLIIYATKEGGRSVLKVINSKGGVAQTLSDSNGRLRDPAWGP 419 Query: 312 DSS 314 D+ Sbjct: 420 DTR 422 >gi|189426516|ref|YP_001953693.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter lovleyi SZ] gi|189422775|gb|ACD97173.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter lovleyi SZ] Length = 430 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 124/439 (28%), Positives = 213/439 (48%), Gaps = 17/439 (3%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHA-FVKVATNSANYSPVSIAFTKFVSI---DELGGKVS 66 + I+L L +L + A +++V +++ + + EL + + Sbjct: 1 MKQLIHLVLACLLFLSMQQDTGAANYIEVTAAGNRLLKLAVVPPQPMGTVIRPELANETA 60 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 E+ + DL S + +D+ + F W S G +L+ G G+ L + Sbjct: 61 ELHAFDLTMSGLVAAERRDAAPLVHGLALTPVDFVPWLSAGYDLLIRGEYELRGQ-ELTL 119 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 EFRL+DV +K + K+F R+ AH+ SD++ +++TGEKG F S+IL+VS + Sbjct: 120 EFRLYDVVAKKLLTSKRFLGREKDLRRYAHSFSDEVLRALTGEKGAFTSKILYVSTQSGN 179 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L VMD DG N + LT +R I P SP+ ++V + +Y + Sbjct: 180 ----KELAVMDWDGFNSQQLTGNRS-INLSPDISPDGREVIFTSYKRGNPD--LYKRALS 232 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + + +S +G R +++ KD +IY+V +A RLT + N+S Sbjct: 233 SNLEVPVSSRSGLNITGAWSPDGNRIALALSKDGNTEIYTVAKDGSAPNRLTVSHAANVS 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +++PD S+I F SDR GK Q++VM +NG + +R+ + +P WSP+GD +AF + Sbjct: 293 PAWTPDGSKIAFVSDRLGKPQIFVMDANGGNVRRLITSGSYNV-NPSWSPKGDKLAFARM 351 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +G F I V DGS E L + N + P WSP GR + FS ++ G +Y + +G Sbjct: 352 AGG-FQIFVANADGSNEIQLTFEGNNERPRWSPDGRLITFSSRRGGQ--EAIYVMRADGS 408 Query: 427 NETLIN-TPAYASDPQWVG 444 +T ++ + + P W Sbjct: 409 GQTKVSRSKGLSQHPVWTP 427 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 9/140 (6%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I FVS+ + K + VMD +G N+R L S P +SP K+A+A Sbjct: 300 SKIAFVSDRLG----KPQIFVMDANGGNVRRLITSGS-YNVNPSWSPKGDKLAFARMAGG 354 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++++ + + F PR+S +G+ S ++ IY + + Sbjct: 355 --FQIFVANADGSNEIQL--TFEGNNERPRWSPDGRLITFSSRRGGQEAIYVMRADGSGQ 410 Query: 295 ERLTNTLFINISASYSPDSS 314 +++ + ++ ++P Sbjct: 411 TKVSRSKGLSQHPVWTPRGQ 430 >gi|148244622|ref|YP_001219316.1| biopolymer transport protein TolB [Candidatus Vesicomyosocius okutanii HA] gi|166229993|sp|A5CWT2|TOLB_VESOH RecName: Full=Protein tolB; Flags: Precursor gi|146326449|dbj|BAF61592.1| biopolymer transport protein TolB [Candidatus Vesicomyosocius okutanii HA] Length = 424 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 107/431 (24%), Positives = 202/431 (46%), Gaps = 15/431 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF--VSIDELGGKVSEVVSKDLQRSD 77 +V I + T A ++V + I + F V G +++++ + RS Sbjct: 4 FIVFILSLYTTLSWAVLEVTIFKQEENTFPIVISDFFVVGDASQGKVIADIMRNNFNRSG 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F++++ + + S P F W + + +V G++ K K VE L DV +K Sbjct: 64 EFSVVNANYIIR------SKPSFDKWKAKKIEAIVLGKLEKISKKIFNVEIELLDVYSKK 117 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVM 196 + F + R+IAH +SD IY ++ G++G FN+R+ +++ + G + L + Sbjct: 118 TLYKDIFTVHNSGIRRIAHYLSDQIYHALLGKRGFFNTRLAYITVINKDKGEREYRLEIS 177 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D D N + + SR+ L P +SP Q K+AY ++ + V++ I R +++ F Sbjct: 178 DSDAQNPQTILKSREP-LLSPVWSPKQDKIAYVSFKNSRS-EVFIQYPFIRRKIQKLPYF 235 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + +P + NG+ L+++ K+ DIYS L S RLT + I+ ASYSPD ++I Sbjct: 236 DGIASSPSWHPNGEILLLTLSKNGNKDIYSYQLSSKKLTRLTIDMGIDTEASYSPDGNKI 295 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 +F S+R G+ Q+Y+ + R + + V+SP G + + + I ++ Sbjct: 296 IFTSNRSGQVQVYIKDLKTNKINRATFKGRYNAQA-VFSPDGKSLIMVHKIDQDYRIALL 354 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPA 435 +++ + ++P +SP+G +IF+ + G + SI GR L + Sbjct: 355 DIATKDLKVMTNNQLDESPFFSPNGDMIIFATNQGGFGVLSVVSIW--GRQIFELTSKVG 412 Query: 436 YASDPQWVGFM 446 +P W ++ Sbjct: 413 EVREPNWSHYL 423 >gi|118581723|ref|YP_902973.1| WD40 domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504433|gb|ABL00916.1| WD-40 repeat-containing protein [Pelobacter propionicus DSM 2379] Length = 435 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 110/414 (26%), Positives = 202/414 (48%), Gaps = 17/414 (4%) Query: 37 KVATNSANYSPVSIAF-----TKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 + + + +A + S E ++ EV++ D+ S + ++ F Sbjct: 32 YIEITAPGNRQLRMAVDVPRSLEAASSPEKAREMGEVIAFDMNMSGLCLAEIKEQFNLSG 91 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 + F W G +LV G +G D L VEFRL+D+ +RK + +++ Sbjct: 92 ALLFAEADFNSWLKGGYDLLVRGEYSVKGDD-LTVEFRLFDLANRKMMTARRYLGKTKDL 150 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+ AH+ +D+I ++TGE+G F + I FVS + + +MD DG + R LT + Sbjct: 151 RRFAHSFADEILLAMTGERGCFTTHIAFVSTRSGN----KEIAIMDWDGHDTRQLTRNHS 206 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I P FSPN +++ + +Y + + + + + +S +G R Sbjct: 207 -INLNPDFSPNGREIIFTSYKRHNPD--LYRRPLSSPVEVAVSHREGLNITGAWSPDGSR 263 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ KD +IY++ ++ RLT+ I IS ++SP+ SQI F SDR GK Q+++M Sbjct: 264 IALALSKDGNSEIYTIARDGSSPVRLTSHPAIEISPTWSPNGSQIAFVSDRLGKPQIFIM 323 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 ++G+ +R++ + + +P WSP+GD IA+ + G F I + +GS + L + Sbjct: 324 NADGTGVRRLTTNGGYNV-NPRWSPKGDKIAYARMEGGGFQIHTINVNGSDDTQLTSSGS 382 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVG 444 + P WSP GR + FS ++ +G ++Y + +G ET ++ ++ P W Sbjct: 383 SENPAWSPDGRLIAFSGRRG--SGDEIYVMRADGSGETRVSKVGGRSTQPAWQP 434 >gi|118602525|ref|YP_903740.1| TolB domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166229990|sp|A1AWG2|TOLB_RUTMC RecName: Full=Protein tolB; Flags: Precursor gi|118567464|gb|ABL02269.1| TolB, N-terminal domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 424 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 111/430 (25%), Positives = 197/430 (45%), Gaps = 13/430 (3%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRSD 77 LLVLI + T ++V + + I + F G ++ V+ + RS Sbjct: 4 LLVLILSLYTTLAWTVLEVTILKQDENAFPIVISDFSVIGDANQGKIIAHVIRNNFNRSG 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F+ S + ++ P F W + + +V G++ K K VE L DV +K Sbjct: 64 EFSASSVNYVI------NNKPNFDKWKAKKIEAIVLGKLEKISKKVFNVEIELLDVFSKK 117 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV-VSGIIKNSLCVM 196 + KF R+IAH +SD IY + GEKG F++R+ ++S + G + L + Sbjct: 118 ILYKDKFVVHNRGIRRIAHYLSDQIYHVLLGEKGSFDTRLAYISVTNKGKGEREYRLEIS 177 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D D N + + S+ I P +SP+Q K+AY ++ + V++ + R +++ F Sbjct: 178 DSDAQNPQTILKSKKPI-LSPVWSPDQNKIAYVSFKNARS-EVFIQYPFVRRKTQKLPYF 235 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + AP + NGK L+++ K+ DIYS L S RLT + I+ ASYS + +I Sbjct: 236 DGIASAPSWHPNGKNLLLTLSKNGNKDIYSYQLSSKKLTRLTTDVGIDTEASYSSEGDKI 295 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF S+R G+ Q+Y+ + R + + V+SP +A G+ + I ++ Sbjct: 296 VFTSNRSGQVQVYIKDLKTNKINRATFKGRYNA-KAVFSPDDKSLAMVHRVGKDYRIALL 354 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 ++ + ++P +SP+G +IF+ K + + SI L + L + Sbjct: 355 DIATKNLTIMTNNQLDESPFFSPNGSMIIFATNKGSSSVLSVVSI-LGRQTFELASKAGE 413 Query: 437 ASDPQWVGFM 446 +P W ++ Sbjct: 414 VREPNWSHYL 423 >gi|261493428|ref|ZP_05989953.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496883|ref|ZP_05993251.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307407|gb|EEY08742.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310922|gb|EEY12100.1| TonB family auxiliary protein TolB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 428 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 105/444 (23%), Positives = 189/444 (42%), Gaps = 26/444 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + + + ++ + T + A V+++ + IA F + + V+++ Sbjct: 1 MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAVVPFKASG-VPADVAQI 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL+ S F + + + + + W+++G +V G+V G V + Sbjct: 60 ISDDLRNSGKFTPLERSQMPAQPGSAAEVVA-DQWSAIGIDNIVVGQVSSTGGG-YNVAY 117 Query: 129 RLWDVKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +L D I F A R+ AHT+SD++++ +T +G F ++I +V + Sbjct: 118 QLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKLTQIRGAFRTKIAYVVQR 177 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 VS L V D DG N +T S++ L P +SP+ ++AY T++++ +V + D Sbjct: 178 GVS---SYELRVSDYDGFNAFTITTSKEP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHD 232 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R A + + + AP FS +G R + +D ++IY V +LT Sbjct: 233 IRSG-ARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVGSGGGTPSKLTANAGN 291 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N S+SPD S I F SDR G Q+Y M S+G + SY V S +LI Sbjct: 292 NTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPM--GGSGSYNAKVSSDGKNLIMI 349 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + +L ++P+ SP+G +I+S K +L + Sbjct: 350 A-----GDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKGTSKVLQL--VSA 402 Query: 424 NGRNE-TLINTPAYASDPQWVGFM 446 +GR + L + P W ++ Sbjct: 403 DGRFKANLPGAGGHYKFPAWSPYL 426 >gi|33152785|ref|NP_874138.1| colicin tolerance protein [Haemophilus ducreyi 35000HP] gi|67462000|sp|Q7VKU3|TOLB_HAEDU RecName: Full=Protein tolB; Flags: Precursor gi|33149009|gb|AAP96527.1| colicin tolerance protein [Haemophilus ducreyi 35000HP] Length = 426 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 105/441 (23%), Positives = 185/441 (41%), Gaps = 22/441 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + +K L+ ++ FF + + A + ++ + IA F + V +V Sbjct: 1 MKLKSRYTSLISVVSIFFSSMVMAESDIVISVDEGVSIAQPIAVVPFKVNGGVSEDVGQV 60 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 V+ DL+ S F I + + I Q W +G V+V G++ + V + Sbjct: 61 VADDLRNSGKFTPIQRAKLPSHPASVAEI-NSQQWTDIGVDVVVVGQITP-ANNGYNVAY 118 Query: 129 RLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L D ++ F R+ AHT+SD I++ +T +G F ++I +V + VS Sbjct: 119 QLVDTLSNPAVVLVQGSFNVPATQMRQAAHTVSDQIFEKLTQIRGAFRTKIAYVVQRGVS 178 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L V D DG N + S++ L P +SPN K+AY T++++ ++ + D R Sbjct: 179 A---YELRVADYDGFNAFTVVKSKEP-LMSPEWSPNGSKLAYVTFENKRP-QIVVHDLRS 233 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + AP FS +G R + +D ++IY ++ +LT + N Sbjct: 234 GQRS-VVAALKGHNGAPAFSPDGSRLAFASNQDGELNIYIANINGGTPIKLTANVGNNTE 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD S I F SDR G Q+Y M S+G+D I + S G + Sbjct: 293 PSWSPDGSIIYFTSDRAGSPQVYRMSSSGNDVIPIGTRGSYNAKA---SSDGKNLIMIAG 349 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +L ++P+ SP+G +I+S K +L + +GR Sbjct: 350 D----NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTKGTSKVLQL--VSADGR 403 Query: 427 NE-TLINTPAYASDPQWVGFM 446 + L P W ++ Sbjct: 404 FKANLPGAEGQFKFPAWSPYL 424 >gi|99034160|ref|ZP_01314250.1| hypothetical protein Wendoof_01000957 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 396 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 136/409 (33%), Positives = 212/409 (51%), Gaps = 26/409 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ ++ +S + W S +VT + + L + FRL+D Sbjct: 67 CGLFNV-------KRGAEAES----KSWKS---DTVVTVSLSEISGSALELSFRLFDAFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 VM++DG+NI+YLT D+ + PRFSPN + + Y +Y + + + D I Sbjct: 173 VMNQDGSNIKYLTNG-DRFVSTPRFSPNGKGIVYISYANGKSYII--LKNLKDNTESIIS 229 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 F ++ APRFS +GK LIS +I S+DL S T+++T I+ S S+SPD Sbjct: 230 AFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQK 289 Query: 315 QIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F SD G +QLYV+ + KRIS Y PVWSP+GDLIAFTK KF Sbjct: 290 YMAFSSDISGSQQLYVIDFTNKSKKPKRISF-GSGRYATPVWSPKGDLIAFTKIQSGKFY 348 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 IGVMK DG +ERLL E +++P W P+GR +IF+R + + SKLY + Sbjct: 349 IGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTES-PSNSKLYLV 396 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 7/166 (4%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 I ++ + + LTN + +SP+ IV+ S GK + + + + I Sbjct: 170 KIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKD-NTESII 228 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSG 401 E P +SP G + + G + I + + + + + S + +P++SP Sbjct: 229 SAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQ 288 Query: 402 RSLIFSRKKDGDTGSKLYSIDLN---GRNETLINTPAYASDPQWVG 444 + + FS G +LY ID + + + + P W Sbjct: 289 KYMAFSSDISGSQ--QLYVIDFTNKSKKPKRISFGSGRYATPVWSP 332 >gi|126642629|ref|YP_001085613.1| tolerance to colicins E2 E, A, and K [Acinetobacter baumannii ATCC 17978] Length = 381 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 183/393 (46%), Gaps = 16/393 (4%) Query: 54 KFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVT 113 F + + L +V DL RS F S++ + + DW + G +VT Sbjct: 2 PFNNDNGL----YPIVETDLNRSGRFTSSSKNL---PANAAINQIQASDWQAAGIPYVVT 54 Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G++ + V ++L+DV+ ++ ++ + + R+ H +SD IYQ++TG GDF Sbjct: 55 GQIKQTADG-FEVHYQLYDVQKQQYLLNELLNVPASRIRQAGHIVSDAIYQALTGIPGDF 113 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + RI +V + + + +L + D DG + + SRD I P ++P+ +K+AY +++ Sbjct: 114 SGRIAYVLRNPATPAERYTLQIADTDGEQPKTVLSSRDPI-LSPAWTPDAKKIAYVSFET 172 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + +YL D + + +F+ + AP FS +GK L + + +IY +DL + Sbjct: 173 KRPA-IYLQDLSTGT-REVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQ 230 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +R+TN I+ A Y+PD +F SDR G Q+Y KR++ + Sbjct: 231 VKRMTNDSGIDTEARYTPDGKAFIFTSDRGGSPQIYRYDFGNGSVKRLTFKGSFNARG-T 289 Query: 354 WSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 S G IA SG + + + + +L S ++P++SP+G+ ++++ ++ Sbjct: 290 LSADGKKIALVHRPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYATREGN 349 Query: 413 DTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 + + +GR L + +P W Sbjct: 350 RGLLSI--MSTDGRFRMNLPSEQGEVREPAWAP 380 >gi|284007876|emb|CBA73795.1| TolB protein [Arsenophonus nasoniae] Length = 355 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%) Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD--RKQIIGKKF 144 Q+ T + W +LG +V G+V + + ++L DV + + + Sbjct: 1 MPQQPTTASEV-TPNVWTALGINAVVVGQVQPAADGQYIISYQLVDVVNSPGAVLTQNQL 59 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + R AHTISD+++ +TG +G F +RI +V ++ G L V D DG N + Sbjct: 60 KVAAKWLRYAAHTISDEVFAKLTGIRGAFRTRIAYVVKTN-GGKFPYELRVSDYDGYN-Q 117 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + + L P +S + +K+AY T++ ++ T ++I +F AP Sbjct: 118 FTVHRSPEPLMSPAWSADGEKLAYVTFESGS--SALVIQTLATGEVRQIASFPRHNGAPT 175 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + + K ++++Y +DL S T ++T+ N ++ PD+ +++ SD+ G Sbjct: 176 FSPDGTKLAFVLSKSGSLNLYVMDLASGQTRQITDGRSNNTEPNWMPDNQTLIYTSDQAG 235 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + Q+Y + NG +RI+ + + + D SP G + S K I Sbjct: 236 RPQIYKLNINGGVPERITWEGKQNQ-DASVSPDGKFMVMVNSSDGKQHIAKQDLATGNVE 294 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWV 443 L + + P+ +P+G +I+S + G+ L + +GR + L T P W Sbjct: 295 YLTDTFLDETPSIAPNGTMVIYSSSQG--LGTVLQLVSTDGRFKARLPATDGQVKFPAWS 352 Query: 444 GFM 446 ++ Sbjct: 353 PYL 355 >gi|32491161|ref|NP_871415.1| hypothetical protein WGLp412 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|32699700|sp|Q8D2E2|TOLB_WIGBR RecName: Full=Protein tolB; Flags: Precursor gi|25166368|dbj|BAC24558.1| tolB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 431 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 198/432 (45%), Gaps = 14/432 (3%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK----VSEVVSKDLQ 74 LL LI FF + ++ V ++ N I + F ++ +S+++S DLQ Sbjct: 4 LLFFLICVFFSKTSYSNVDISINKGIDISTPIGISSFEWVEVNENNNYENISKIISCDLQ 63 Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S F+ I K + N L ++TG++ + ++L D+ Sbjct: 64 NSGKFSPIEIYKESNKSIEKQIKNNSINLNKLNINTILTGKISLNYNGEYLISYKLIDLV 123 Query: 135 D--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + K ++ S+RK+AH IS++I++ +TG +G F++RI ++ + + K Sbjct: 124 NYPGKILLSGYRTVHLQSFRKVAHEISNEIFKKLTGIQGVFHTRIAYILYN-KNNEYKYK 182 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 LC+ D DG N + + + L P +SP+ +K+AY T++ + + + D + K Sbjct: 183 LCISDYDGYN-QNIIHQSNMPLMSPSWSPDGKKIAYVTFE-KGSSEIKIKDIKTGS-IKH 239 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I +F AP FS NG+ ++ K ++++Y ++L++ +++T+ N S+ PD Sbjct: 240 ISSFPYHNGAPAFSPNGENLAFALSKTGSLNLYVMNLKNGYIKQITHGNSNNTEPSWFPD 299 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++ + + SD+ G Q+Y + + R+S + V SP G IA + Sbjct: 300 NNSLAYTSDQSGTPQIYKINISNGKFNRLSWLGSKNQNANV-SPDGKFIAMVNSEKKSQH 358 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LI 431 I + + +++ E +AP+ SP+ +I++ + +L I NGR +T ++ Sbjct: 359 IALFDINMDNAKIITETFLDEAPSISPNNVMIIYTSSYGDSSVIEL--ISTNGRFKTSIL 416 Query: 432 NTPAYASDPQWV 443 P W Sbjct: 417 KINGQIKFPAWS 428 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 I++ + E K +L + +G +Q I P WSP G IA+ F I Sbjct: 170 YILYNKNNEYKYKLCISDYDGYNQN-IIHQSNMPLMSPSWSPDGKKIAYVTFEKGSSEIK 228 Query: 375 VMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN 432 + + + + AP +SP+G +L F+ K G LY ++L NG + + + Sbjct: 229 IKDIKTGSIKHISSFPYHNGAPAFSPNGENLAFALSKTGS--LNLYVMNLKNGYIKQITH 286 Query: 433 TPAYASDPQWVG 444 + ++P W Sbjct: 287 GNSNNTEPSWFP 298 >gi|224370139|ref|YP_002604303.1| AglW [Desulfobacterium autotrophicum HRM2] gi|223692856|gb|ACN16139.1| AglW [Desulfobacterium autotrophicum HRM2] Length = 447 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 100/450 (22%), Positives = 199/450 (44%), Gaps = 26/450 (5%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSI---HAFVKVATNSANYSPVSIAFTKFVS------I 58 +L+ I+ +VL F + V + + + +A F Sbjct: 4 KRQLSRVISPIFYVVLAFLVFGQAAGSWAQQVYLNISDPFLRKIPVAVPLFKPLTGGAVE 63 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP---RFQDWNSLGAQVLVTGR 115 D L G+ E++ DL+ + ++ S+ + F++W +G++++VT Sbjct: 64 DRLAGEAREILVSDLEFTGYMTILDPLSYIENPATKGITRTDLNFKNWTVIGSELVVTCG 123 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 +++ G D L ++ RL+D + ++GK + R++ H +I +TG+ G F+S Sbjct: 124 IVESGGD-LELKMRLFDPFTERLVVGKVYTGKVNDLRRMIHRFCSEISFHLTGKWGVFSS 182 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ FVS + + V + DG N R +T + I P +S + Q +AY +Y + Sbjct: 183 RLAFVSTKGKN----KEIFVAEFDGHNSRQVTR-LNSISISPAWSSDGQWLAYTSYAGGN 237 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ + +R + NF+ M + P + ++ + +IY + + + Sbjct: 238 P-DIYIKNLIQNRGA--VVNFKGMNITPAWIPGQFSLAAALSFENDQEIYLLTGKGRIIK 294 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +LTN+ I++S +SPD ++ F S R G Q+Y+ +R++ + P WS Sbjct: 295 KLTNSWGIDVSPCFSPDGKKMAFVSKRAGTPQVYIQDMESDTVRRLTFTGRYN-TSPAWS 353 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDT 414 P GD IA+ + + I V+ DGS L + + P WSP + F+ ++G Sbjct: 354 PDGDKIAYVGIANGEINIYVVGIDGSGVVQLTSSTGDNEDPCWSPDAGLIAFTSTREG-- 411 Query: 415 GSKLYSIDLNGRNETLI-NTPAYASDPQWV 443 +++Y + G + + ++P+W Sbjct: 412 VARIYVMTATGGEQRRLFLMDGAQTNPEWS 441 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 4/176 (2%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R K + +I+ + + + ++T I+IS ++S D + + S G +Y Sbjct: 182 SRLAFVSTKGKNKEIFVAEFDGHNSRQVTRLNSISISPAWSSDGQWLAYTSYAGGNPDIY 241 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + ++ P W P +A I ++ G + L Sbjct: 242 IKNLIQNRGAVVNFKGMN--ITPAWIPGQFSLAAALSFENDQEIYLLTGKGRIIKKLTNS 299 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + +P +SP G+ + F K+ G + ++ + L T Y + P W Sbjct: 300 WGIDVSPCFSPDGKKMAFVSKRAGTPQVYIQDMESD-TVRRLTFTGRYNTSPAWSP 354 >gi|219870351|ref|YP_002474726.1| translocation protein TolB [Haemophilus parasuis SH0165] gi|219690555|gb|ACL31778.1| dna-J like membrane chaperone, translocation protein TolB/colicin tolerance protein/periplasmic component of the Tol biopolymer transport system [Haemophilus parasuis SH0165] Length = 391 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 173/404 (42%), Gaps = 25/404 (6%) Query: 49 SIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGA 108 IA F ++ + V+++++ DL+ S F + + S + ++ + + W ++G Sbjct: 4 PIAVIPFKAMGGVPDDVAQIIADDLRNSGKFTPLDRASLPAQPSSAAEV-NPEQWTNIGI 62 Query: 109 QVLVTGRVIKEGKDRLRVEFRLWDV-----KDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 +V G+V G + ++L D I F A R AHT+SD ++ Sbjct: 63 DNVVVGQVSAVGGG-YNIAYQLVDTLGTSGAAGNVIAQGSFNVPAAQMRLGAHTVSDQVF 121 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + +T +G F ++I +V + VS L V D DG N + S++ L P +SP+ Sbjct: 122 EKLTQIRGAFRTKIAYVVQRGVS---SYELRVSDYDGFNAFTIVKSKEP-LMSPEWSPDG 177 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 K+AY T++++ +V + D R A K IG+ R AP FS +G R + +D ++ Sbjct: 178 SKLAYVTFENKKS-QVVVHDIRSG-ARKVIGSLRGHNGAPSFSPDGSRVAFASNQDGVLN 235 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY + + +LT+ N S+SPD I+F SDR G Q+Y M S+G I Sbjct: 236 IYVTGVGGGSPRQLTSNAGNNTEPSWSPDGGYILFTSDRGGLPQVYQMSSSGGGASLI-- 293 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 S G + I + ++P+ SP+G Sbjct: 294 ---GGSGSGKISADGKNLIMVSGD----RIVRRDLVSGSTEAISSTFLDESPSISPNGTM 346 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +I+S K +L + +GR + L P W ++ Sbjct: 347 VIYSSTKGVSKVLQL--VSADGRFKANLPGAGGQYKFPAWSPYL 388 >gi|302038650|ref|YP_003798972.1| protein TolB [Candidatus Nitrospira defluvii] gi|300606714|emb|CBK43047.1| Protein TolB precursor [Candidatus Nitrospira defluvii] Length = 443 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 107/447 (23%), Positives = 214/447 (47%), Gaps = 20/447 (4%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV---SIDELGGKVSE 67 + + I LC+++ S V + ++ + I F + LGG++ E Sbjct: 6 IGLMIALCVVVGAGLFGILDSRATDVFLEATRPDFQKIPIGVFGFQNGGGPEWLGGRIEE 65 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPR--FQDWNSLGAQVLVTGRVIKEGKDR-- 123 V+ DLQRS VF+L+ + K + + F+ G VLV G+ ++ + Sbjct: 66 VLKADLQRSLVFSLVDLPAIGVKAREVSTTDKAIFKQAAENGVSVLVWGKSGQKNGSKES 125 Query: 124 -LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L ++ ++D + + GK++ S + R +AH +D++ TGE G ++I++V+E Sbjct: 126 ELLMDGFVYDSGSDEVVGGKRYVGSTSVVRLMAHRFADELVFRYTGEPGIARTKIVYVAE 185 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + L VMD DG + +T + PR+SP+++ + + Y + + ++ Sbjct: 186 HGNA----RELFVMDYDGYEPKQITADG-FLNLMPRWSPDRRFIVFTAYRSRNTQDIDIL 240 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + + + + P S +G + +D +IY +D ++ +RLT Sbjct: 241 ELATGKRWTLV-SMAGLNITPALSPDGNFLAFASSQDGNSEIYKLDTRTKTPQRLTVNQG 299 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++S ++SP +I F SDR G Q+++M ++GS+ +R++ + + + P WSP+G+ IA Sbjct: 300 GDLSPTWSPTGREIAFTSDRGGAPQVFIMSADGSNVRRLTYEGDYNA-APAWSPRGNWIA 358 Query: 363 FTKFSGEK-FAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + ++ + I + DG + ++ +P+WSP GR + FS DG S +Y Sbjct: 359 YVCRTAQRLYKICTVSPDGQKRVQVTTGPGIDDSPSWSPDGRHITFSSTVDGK--SHIYM 416 Query: 421 IDLNGRN-ETLINTPAYASDPQWVGFM 446 +D +G+ E + + S P W + Sbjct: 417 VDTDGKGLERITFGGTHNSSPSWSPAL 443 >gi|218780986|ref|YP_002432304.1| hypothetical protein Dalk_3146 [Desulfatibacillum alkenivorans AK-01] gi|218762370|gb|ACL04836.1| WD40 domain protein beta Propeller [Desulfatibacillum alkenivorans AK-01] Length = 442 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 200/451 (44%), Gaps = 23/451 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYSPVSIAFTKFVSID------ 59 +++ N C L +LI S A N+ + IA F Sbjct: 1 MSKTFNRTACTCFLFLLIMTVLAGSASAARYEYWINNPFLRKIPIAIKDFEPKTVNEEPR 60 Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFK--QKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 + + E + L+ F ++ ++S+ F +W S+GA LVTG + Sbjct: 61 QAAVQAKEWLVSGLEFVRYFQILPEESYIIGDGEGLTAQTINFANWVSIGADHLVTGGLD 120 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRI 177 L +E RL+DV + I+GK++ RK+ +I +T +G F ++I Sbjct: 121 LR-DGVLVLELRLFDVPRNRLIVGKRYKGRVEDMRKMIRRFCVEIVTELTDSRGVFGTKI 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 FVS +G + + DG + + LT S +I P +S + +AY +Y D Sbjct: 180 AFVS----NGPGNKEIFACEYDGFDPQQLT-SGSKIALSPAWSGDGTHMAYVSYADG-PP 233 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 +++ + R K ++ + + P + ++ + +IYS+ ++L Sbjct: 234 EIFIRNLAQKRGVKV--AYKGINVTPAWDPTRFALAATLSLNGDQEIYSLTGNGKIIKKL 291 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 TN I++S SYSPD ++ F S+R G Q+Y+M+ + R++ D + + P +SP+ Sbjct: 292 TNNWGIDVSPSYSPDGKRMAFVSNRGGSPQIYIMELDTGQTSRVTFDGKYN-SAPAFSPR 350 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 GD IA+ F + ++ DG+ + L + + + P+WSP G + FS ++G + Sbjct: 351 GDRIAYCGMVDGTFDVFTVRTDGTDLQRLTDHPGDDEEPSWSPDGTLIAFSTTREGK--A 408 Query: 417 KLYSIDLNGRNET-LINTPAYASDPQWVGFM 446 K+Y + +G ++ L+ + P W ++ Sbjct: 409 KIYVMTSHGTDQRKLLELEGAQTQPAWSPWL 439 >gi|88607556|ref|YP_505595.1| translocation protein TolB [Anaplasma phagocytophilum HZ] gi|88598619|gb|ABD44089.1| TolB family protein [Anaplasma phagocytophilum HZ] Length = 435 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 136/448 (30%), Positives = 227/448 (50%), Gaps = 23/448 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS-----IDEL 61 ++ L + LL GG A ++++ N +SIAF S ++ Sbjct: 1 MSIRLGVATFFIFLLFCCGG-----AVASLRLSITKGNTGKLSIAFAPLHSFESNLAQKI 55 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD-WNSLGAQVLVTGRVIKEG 120 G ++++ KDL + +F D+ + + + + W L +L+TG V + Sbjct: 56 GESCTDIILKDLNNTGLF-----DARIEILDPTSDGAAYSNVWRELKHDILLTGNVQELS 110 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 R+ ++ +WDV K++ GK F WR+ AHT++D IY ITG G F+S+I ++ Sbjct: 111 HGRMGIKLFVWDVAAEKKLSGKSFNFEIGGWRRAAHTVADHIYTRITGNGGYFDSKIAYI 170 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ + + + +MD DGAN Y + + L PRFSP+ + + Y Sbjct: 171 ADMLG----ERRIALMDYDGANSVYASIDNNGWLSFPRFSPDTKSIVYTLTSQSSPSGRV 226 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ + ++ + RFS +G+ L+S + + DIYS L S RLT Sbjct: 227 MLYDMRREVSSLLIGMSGIVSSVRFSPSGREILLSESLNGSTDIYSFSLISKKLTRLTAD 286 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 F+N SASYSPD IVF SDR+G LY+M +NGS+ ++IS Y PVWSP G Sbjct: 287 EFMNTSASYSPDEKSIVFASDRDGGSHLYIMDANGSNPRKISS-GSGRYMSPVWSPNGTW 345 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGDTGSKL 418 IAFTK G + IG+M+ +GS+ER++ D + P+W+P+G+++++++ ++ ++L Sbjct: 346 IAFTKVKGARCYIGIMRPNGSKERMIASDCFAEGPSWAPNGQAVLYTKHVQRVEHLATEL 405 Query: 419 YSIDLNGRNETLINTPAYASDPQWVGFM 446 +DL+ N INTP+ A W M Sbjct: 406 AMVDLSSMNRRAINTPSDALIAHWSNTM 433 >gi|86157087|ref|YP_463872.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|119371034|sp|Q2INP9|TOLB_ANADE RecName: Full=Protein tolB; Flags: Precursor gi|85773598|gb|ABC80435.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 434 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 113/418 (27%), Positives = 188/418 (44%), Gaps = 21/418 (5%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGG---KVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 + S ++ P+ IA F + G + +EVV DL S +F+++ F Sbjct: 27 TIVVGSPDFRPLPIAVAAFQGEGDAGAAATQTAEVVRADLVLSGLFDVLDPRGFLADPAE 86 Query: 94 PDSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 + P RF W +GA L RV + G L E L++V+ ++++ K A Sbjct: 87 GFAAPSIRFARWADVGADGLAKARVRR-GPGGLEGELHLYEVRAGREVLVKLLRVDGADA 145 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R +AH ++D+I + T E G F +RI + G L D DG N + L R Sbjct: 146 RSLAHRMADEIVRYYTREPGIFATRIAAI----RRGRGTWELVTQDMDGGNQQVLLSERS 201 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 IL P + P+ +++ +Y L R R + +S +G R Sbjct: 202 -ILMSPAWRPDGREILVTSYRSGRPE---LWAYRFSDRAFRPLGRQRNAFGGVYSPDGSR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +V + D++ + + +LT+ I++S ++SPD +I F SDR G Q+YVM Sbjct: 258 IAFTVSEGNVTDLWVMSADGSGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVM 317 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED- 389 ++GS +R++ + P WSP+GDLIAFT K F + V+ D + +D Sbjct: 318 GADGSGARRLTFQGNYNQT-PQWSPRGDLIAFTARDERKVFDVFVVAPDSGAISRITQDQ 376 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 + P+W+P+GR +IF ++G G +L D G +T + + + P W Sbjct: 377 GRTNEEPSWAPNGRLMIFRTDRNG--GIQLVVSDARGDRQTPVTSGKTDLAAPAWGPL 432 >gi|220915811|ref|YP_002491115.1| TolB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|254764837|sp|B8JD21|TOLB_ANAD2 RecName: Full=Protein tolB; Flags: Precursor gi|219953665|gb|ACL64049.1| TolB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 434 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 112/418 (26%), Positives = 186/418 (44%), Gaps = 21/418 (5%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELGG---KVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 + S ++ P+ IA F + G + +EVV DL S +F+++ F + Sbjct: 27 TIVVGSPDFRPLPIAVAAFQGEGDAGAAATQTAEVVRADLVLSGLFDVLDPRGFLADPSE 86 Query: 94 PDSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 + P RF W +GA L RV + L E L++V+ ++++ K A Sbjct: 87 GFAAPSIRFARWADVGADGLAKARVRRGPAG-LEGELHLYEVRAGREVLVKLLRVDGADA 145 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R +AH ++D+I + T E G F +RI + G L D DG N + L R Sbjct: 146 RSLAHRMADEIVRYYTREPGIFATRIAAI----RRGRGTWELVTQDMDGGNQQVLLSERS 201 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 IL P + P+ +++ +Y L R R +S +G R Sbjct: 202 -ILMSPAWRPDGREILVTSYRSGRPE---LWAYRFSDRAFRPLGRHRNAFGGVYSPDGSR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +V + D++ + +LT+ I++S ++SPD +I F SDR G Q+YVM Sbjct: 258 IAFTVSEGNVTDLWVMSADGAGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVM 317 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED- 389 ++GS +R++ + P WSP+GDLIAFT K F + V+ D + +D Sbjct: 318 GADGSGARRLTFQGNYNQT-PQWSPRGDLIAFTARDERKVFDVFVVSPDSGAINRITQDQ 376 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 + P+W+P+GR +IF ++G G +L D G +T + + + P W Sbjct: 377 GRTNEEPSWAPNGRLMIFRTDRNG--GIQLVVSDARGDRQTPVTSGKTDLAAPAWGPL 432 >gi|320354281|ref|YP_004195620.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122783|gb|ADW18329.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032] Length = 428 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 126/445 (28%), Positives = 214/445 (48%), Gaps = 23/445 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKV--ATNSANYSPVSIAFTKFVS-IDELGG 63 + ++ + L + + ++ A + ++++ + +A F G Sbjct: 1 MKRRHSLFTVVILAVSFLSCLSARNLQAEERTYYDISASDVRKIMVAVPNFSGSGGNQGA 60 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 V+++++K L+ +I + R DW SLGA +V G+V + Sbjct: 61 AVAQLLTKGLELHGFIGVIDSSRYGGS--------RDADWKSLGADYVVLGQVSGDPAG- 111 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 + VE ++ DV + G++F S A + + D + Q TGE G +RI +VS++ Sbjct: 112 IAVEGQILDVASNASLAGRRFKGSAAQLEDMTLRLCDTLIQDFTGEMGVARTRIAYVSDA 171 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + + + D G + R +T R + PRF+P+ +AY+TY + +Y+ D Sbjct: 172 TG----RKEVYISDILGRHPRQVTRHR-ALCVSPRFTPDGNYLAYSTYHRGN-QDLYITD 225 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + A + + LAP FS +G+ ++++ K D+YS+D Q N +LT+ I Sbjct: 226 LRQNTATNALSRRNGLNLAPTFSPDGRTMVVTLSKGGNPDLYSMDRQGNIIRQLTSGAGI 285 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+SASYSPD + F SDR GK +YVM + G KR++ + +PVWSP+GD IAF Sbjct: 286 NVSASYSPDGQTLAFVSDRSGKPNVYVMSAGGGQAKRLTFKCPEN-SEPVWSPKGDEIAF 344 Query: 364 TKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 T G + + VM ++G R L N ++PTWSP GR L +RK S++ + Sbjct: 345 TGLQGGIYQLFVMDRNGGNVRQLSTGGGNYESPTWSPDGRLLAVTRKSGSR--SEICVVS 402 Query: 423 LNGRNET-LINTPAYASDPQWVGFM 446 +G++ L S PQW G + Sbjct: 403 KSGKDVRSLFAMKGNQSYPQWSGRL 427 >gi|197121110|ref|YP_002133061.1| TolB domain protein [Anaeromyxobacter sp. K] gi|226705865|sp|B4UDE1|TOLB_ANASK RecName: Full=Protein tolB; Flags: Precursor gi|196170959|gb|ACG71932.1| TolB domain protein [Anaeromyxobacter sp. K] Length = 434 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 112/418 (26%), Positives = 186/418 (44%), Gaps = 21/418 (5%) Query: 37 KVATNSANYSPVSIAFTKFVSIDELG---GKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 + S ++ P+ IA F + G + +EVV DL S +F+++ F + Sbjct: 27 TIVVGSPDFRPLPIAVAAFQGEGDAGVAATQTAEVVRADLVLSGLFDVLDPRGFLADPSE 86 Query: 94 PDSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 + P RF W +GA L RV + L E L++V+ ++++ K A Sbjct: 87 GFAAPSIRFARWADVGADGLAKARVRRGPAG-LEGELHLYEVRAGREVLVKLLRVDGADA 145 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R +AH ++D+I + T E G F +RI + G L D DG N + L R Sbjct: 146 RSLAHRMADEIVRYYTREPGIFATRIAAI----RRGRGTWELVTQDMDGGNQQVLLSERS 201 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 IL P + P+ +++ +Y L R R +S +G R Sbjct: 202 -ILMSPAWRPDGREILVTSYRSGRPE---LWAYRFSDRAFRPLGRHRNAFGGVYSPDGSR 257 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +V + D++ + +LT+ I++S ++SPD +I F SDR G Q+YVM Sbjct: 258 IAFTVSEGNVTDLWVMSADGVGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVM 317 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED- 389 ++GS +R++ + P WSP+GDLIAFT K F + V+ D + +D Sbjct: 318 GADGSGARRLTFQGNYNQT-PQWSPRGDLIAFTARDERKVFDVFVVSPDSGAINRITQDQ 376 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 + P+W+P+GR +IF ++G G +L D G +T + + + P W Sbjct: 377 GRTNEEPSWAPNGRLMIFRTDRNG--GIQLVVSDARGDRQTPVTSGKTDLAAPAWGPL 432 >gi|94268877|ref|ZP_01291310.1| WD40-like Beta Propeller [delta proteobacterium MLMS-1] gi|93451428|gb|EAT02274.1| WD40-like Beta Propeller [delta proteobacterium MLMS-1] Length = 437 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 106/429 (24%), Positives = 198/429 (46%), Gaps = 27/429 (6%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVS------IDELGGKVSEVVSKDLQRSDVFN 80 A V + S +++A G ++++++S+ L+ Sbjct: 25 MAAQPATARVYLDITSPEMRKIAMAVPPMADQLQPDQTTGDGRRMADIMSRALEFHGFIE 84 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 +I + ++ + +W+ GA+ +V GR L +E RL D+ + I Sbjct: 85 MIEPQLYGER--------QEANWSRHGAEFVVLGRYRHSADG-LNLELRLLDIDAGRMIH 135 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 G+++ + R++ +D++ + +TGEKG SRI FVS + + D G Sbjct: 136 GRRYQAPREQLRQLLLRFTDEVVEVLTGEKGVSQSRIAFVS----DASGDKEIYLADILG 191 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +IR +T +D + PRF+P+ + +AY +Y + +Y D R + + I + + Sbjct: 192 DDIRRVTYHQD-LAVAPRFTPDGRGLAYTSYHRGNA-NLYQTDIRELKTTRAISRWVGLN 249 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + P + G + ++++ +D+ D+Y D Q RLT+ +N+S S++PD ++ F S Sbjct: 250 ITPSWPPAGDQMVLTLSRDDNPDLYLTDTQGQIIRRLTHGEGVNVSPSFAPDGRRLAFVS 309 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 DR G Q+Y+M +R++ + P WSP G IA+T I +++ +G Sbjct: 310 DRSGTPQIYIMDLRTMAVQRLTFQGNDN-TTPSWSPDGRWIAYTGRHEGVLHIFIIRPEG 368 Query: 381 SQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTPAYA 437 + + + P+WSP R L+FSR + +L +I LNGRN ++ + P Sbjct: 369 GPPIQVTRSWGHHETPSWSPDSRQLVFSRLRHEH--EQLCTILLNGRNLRVLFSDEPGNH 426 Query: 438 SDPQWVGFM 446 S PQW + Sbjct: 427 SMPQWSPRL 435 >gi|33519798|ref|NP_878630.1| translocation protein TolB [Candidatus Blochmannia floridanus] gi|67462001|sp|Q7VR84|TOLB_BLOFL RecName: Full=Protein tolB; Flags: Precursor gi|33504143|emb|CAD83405.1| tolB protein precursor [Candidatus Blochmannia floridanus] Length = 460 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 109/462 (23%), Positives = 199/462 (43%), Gaps = 39/462 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--------GK 64 M I ++LI F + +K+ + IA F++ + + Sbjct: 1 MTIFQKSFILLIIWNFSLFAFSDMKIEITHGINTAHPIAVIPFINNENITHELNNDNIED 60 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 ++ +++ DL+ S FN + + + D IP F W LG +V G + + ++ Sbjct: 61 IASIIAADLRNSGKFNTLPIAYLPYQPSKLTDIIPTF--WEKLGINTVVLGAINIKNEN- 117 Query: 124 LRVEFRLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 + ++L D + I+ ++ R AHTISD+I++ +TG KG F +RI ++ Sbjct: 118 YVISYQLIDTSNNPALVILDNQYEIEKKHLRYTAHTISDEIFEKLTGIKGVFCTRIAYIL 177 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + LC D DG N + S + L P +SP+ +K+AY T+ + Sbjct: 178 YTN-NIKYAYELCTSDYDGHNQVSICRSSEP-LMSPAWSPDGKKLAYVTFASGHSELI-- 233 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + T +R+ I F + AP +S +GK+ S+ K ++++Y +DL SN +++T+ Sbjct: 234 IQTLTNRSIDNIIQFPNHNGAPAWSPDGKKLAFSLSKTGSLNLYIMDLSSNNIQQITSNR 293 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDL 360 + N S+ PDS + + SD+ G Q+Y + N + D RIS S P S G Sbjct: 294 YNNTEPSWFPDSQNLAYTSDQGGVPQVYKININNNRDSHRISWL-NGSNQKPNISMDGTF 352 Query: 361 IAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + K I + G +E L + P+ SP+G ++S ++ S+LY Sbjct: 353 MVMVNRNKGKQYISKLNFLTGEEETLTADSVLADTPSISPNGIMFMYSSIILNNSSSELY 412 Query: 420 -----------------SIDLNGRNETLINTP-AYASDPQWV 443 ++G+ + +N P W Sbjct: 413 LDKKFTNIPDNNQSILSLASIDGKFKAHLNGSTGSIRFPTWS 454 >gi|158522221|ref|YP_001530091.1| beta-propeller repeat-containing to-pal system protein TolB [Desulfococcus oleovorans Hxd3] gi|226705875|sp|A8ZUI2|TOLB_DESOH RecName: Full=Protein tolB; Flags: Precursor gi|158511047|gb|ABW68014.1| Tol-Pal system beta propeller repeat TolB [Desulfococcus oleovorans Hxd3] Length = 438 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 193/428 (45%), Gaps = 23/428 (5%) Query: 29 PTSIHAF-VKVATNSANYSPVSIAFTKFVSIDE------LGGKVSEVVSKDLQRSDVFNL 81 P ++ A V ++ + IA F ++ +++++ L+ + FNL Sbjct: 16 PATLFAQYDYVRISNPFLHKIPIAVPLFQALTGTEPEVKAAQSGADLLADTLEFTRYFNL 75 Query: 82 ISQDSFKQKITNPD---SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 I++ +F ++ + ++W +GA+ L+TG V G + +E RL+DV + Sbjct: 76 INRAAFLERPDRTGVTLADIDCKNWRDIGAEFLITGGVTVAG-GMMEMELRLFDVFKERM 134 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 I+GKK+ P RK+ ++ + +TG G F SRI F+S +G + + Sbjct: 135 ILGKKYKGKPVDQRKMIRRFCAEVMEQLTGTPGIFESRIAFIS----TGDGSKEIYACEF 190 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N + +T I P +S + Q +AY +Y + +Y+ +R + + Sbjct: 191 DGYNPQRITR-NSSINLSPAWSSDGQWLAYTSYR-KGGPDLYITHLTENRGT--VFSKEG 246 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + +AP + ++ + +IY + RLT + I++S ++SPD ++ F Sbjct: 247 INIAPSWVPGQFMLAATLSFEGDQEIYLLTGSGTVVRRLTRSWGIDVSPTFSPDGKRMAF 306 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 S R G Q+++M +R++ + + +P W+P D IA+ +G F + V+ Sbjct: 307 VSGRAGSPQIFIMDMGSGRTQRLTFEGGYN-TNPSWNPVNDTIAYCAMTGGAFNVRVIDV 365 Query: 379 DGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAY 436 L + + ++P+WSP G + FS ++ S++Y + G L+ P Sbjct: 366 KTGATVALTADQGDNESPSWSPDGSLIAFSSTREA-GVSRIYVMTAAGTDPRRLLILPGE 424 Query: 437 ASDPQWVG 444 + P+W Sbjct: 425 QTGPKWSP 432 >gi|146329411|ref|YP_001210056.1| TolB protein [Dichelobacter nodosus VCS1703A] gi|146232881|gb|ABQ13859.1| TolB protein [Dichelobacter nodosus VCS1703A] Length = 424 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 111/425 (26%), Positives = 193/425 (45%), Gaps = 13/425 (3%) Query: 21 LVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFN 80 L+L S+ A V V + A + IA G K+ +++ DL ++ +F Sbjct: 8 LMLTCCLSAISVCAQVVVDVSGAMRAAQPIAVLPIQGDP--GVKMEFIIASDLHKTGLFQ 65 Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++ + + + +P I + +++ LGA + GR + +F L V ++K I Sbjct: 66 PVAPEQIRNRPNSPAEI-DYAEFSGLGASYVALGRTLDANGSS--AQFVLTQVANKKVIF 122 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 ++ S A R AH +D I Q +TG +G F+S++ +V E + SL + D DG Sbjct: 123 NEQVSSVDA--RATAHLAADLILQRLTGVQGAFSSKVAYVLEQANAKGRLYSLIISDFDG 180 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 AN R + S + P +S + +++A+ TY V + + + + F Sbjct: 181 AN-RQVVYSSAMPIVSPSWSRDGRQIAFMTYARNHAQLV--IQDVASGSRRVVAEFEGTA 237 Query: 261 LAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +P +S G++ IS + MDIY +DL S A +R+TN I+ +SPD I F Sbjct: 238 SSPSWSPEGRQLAISRADEQGNMDIYLLDLASGAQQRITNHAAIDTEPEFSPDGRFIYFT 297 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G Q+Y M +G + R S SP G + T+ SG + IG+ + Sbjct: 298 SDRAGNPQIYRMDRSGGNVNRAVVGGNYSTSSE-LSPDGQSMVLTRQSGGGYQIGLYQLG 356 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + L + T+SP+G+ ++++ + G T K+ ++ G +TL + D Sbjct: 357 SGSFQALTNGRLDEGATFSPNGQMIMYTATEGGRTVIKMINLKG-GVTQTLSDPSGRLRD 415 Query: 440 PQWVG 444 P W Sbjct: 416 PAWGP 420 >gi|253702172|ref|YP_003023361.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. M21] gi|251777022|gb|ACT19603.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. M21] Length = 407 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 201/414 (48%), Gaps = 27/414 (6%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 + A + + + + L G+V+ VS++L S++F + + + Sbjct: 17 AQAAEGYIDVTAPVSRKLKLFPAP---TTALAGQVTPEVSREL--SELFGMDLGLAGPFE 71 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS 150 ++ + GA +++ +G + +E RL D ++I K++ S Sbjct: 72 VSGDGA----------GADLILKSSYSAQG-GNITLECRLVDRVLNREITAKRYSGSSKE 120 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R++ H SD++ +++TGEKG F +I +V++ + + VMD DG N + LT + Sbjct: 121 LRRMGHAFSDEVLRAVTGEKGPFTGKIAYVTKISGN----KEIFVMDYDGRNPQRLTNNG 176 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 I +P F+P+ +++ Y +Y + +Y + RI + + +S +G Sbjct: 177 S-INLKPDFAPSGKEIIYTSYKKGNP-DLYRRELFTG-LEARISSRNGLNAMGAYSPDGG 233 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + + KD +IY + + RLTN I++S ++SPD S+I F SDR GK Q++V Sbjct: 234 KIAMVMSKDGNSEIYLISREGKELARLTNNHAIDVSPAWSPDGSRIAFVSDRLGKPQVFV 293 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 M ++G + +R++ + + P WSP+GD IA+ + G F I + DG+Q+ L Sbjct: 294 MNADGGNLRRLTTNGAYNVT-PRWSPKGDRIAYARQGGGGFQIHAINPDGTQDTQLTSAG 352 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDPQWV 443 + + P +SP GR ++FS +DG +Y + +G +T + A S P W Sbjct: 353 SNEHPRFSPDGRFIVFSSTRDG--AEAIYLMRADGSGQTRVSPNKAQNSHPTWS 404 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 P + +I + + G ++++VM +G + +R++ + + P ++P G I +T + Sbjct: 142 PFTGKIAYVTKISGNKEIFVMDYDGRNPQRLTNNGSINL-KPDFAPSGKEIIYTSYKKGN 200 Query: 371 FAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + G + R+ + +SP G + KDG S++Y I G+ Sbjct: 201 PDLYRRELFTGLEARISSRNGLNAMGAYSPDGGKIAMVMSKDG--NSEIYLISREGKELA 258 Query: 430 LIN-------TPAYASDPQWVGFM 446 + +PA++ D + F+ Sbjct: 259 RLTNNHAIDVSPAWSPDGSRIAFV 282 >gi|197119875|ref|YP_002140302.1| TolB-like biopolymer transport periplasmic beta-propeller repeat protein [Geobacter bemidjiensis Bem] gi|197089235|gb|ACH40506.1| TolB-related biopolymer transport periplasmic beta-propeller repeat protein [Geobacter bemidjiensis Bem] Length = 407 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 103/419 (24%), Positives = 193/419 (46%), Gaps = 37/419 (8%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVS-----IDELGGKVSEVVSKDLQRSDVFNLISQD 85 + A + + + + E+ ++SE+ DL + F + Sbjct: 17 AQAAEGYIDVTAPVSRKLKLFPAPATGLAGQVPPEVSRELSELFGMDLGLAGPFEVSGDG 76 Query: 86 SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 + GA +++ +G + +E RL D ++I K++ Sbjct: 77 A--------------------GADLILKSSYSAQG-GNITLECRLVDRVLNREITAKRYS 115 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 S R++ H SD++ +++TGEKG F +I +V+++ + + VMD DG N + Sbjct: 116 GSAKELRRMGHAFSDEVLRAVTGEKGPFTGKIAYVTKASGN----KEIFVMDYDGHNPQR 171 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT + I P F+P+ +++ Y +Y + +Y + RI + + + Sbjct: 172 LTNNGS-INLNPDFAPSGKEIIYTSYKKGNP-DLYRRELFTG-LEARISSRSGLNATGAY 228 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + + KD +IY + + RLTN I++S ++SPD S+IVF SDR GK Sbjct: 229 SPDGSKIAMVMSKDGNSEIYLISREGKELARLTNNHAIDVSPAWSPDGSRIVFVSDRLGK 288 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+++M ++G + R++ + + P WSP+GD I + + G F I + DG+Q+ Sbjct: 289 PQVFIMNADGGNVHRLTANGAYNVT-PRWSPKGDRIVYARQGGGGFQIYAINADGTQDTQ 347 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDPQWV 443 L + + P +SP GR ++FS +DG +Y + +G +T + + S P W Sbjct: 348 LTSAGSNEHPRFSPDGRFIVFSSTRDG--AEAIYLMRADGSGQTRVSPNKSQNSHPTWS 404 >gi|328953807|ref|YP_004371141.1| Protein tolB [Desulfobacca acetoxidans DSM 11109] gi|328454131|gb|AEB09960.1| Protein tolB [Desulfobacca acetoxidans DSM 11109] Length = 427 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 106/440 (24%), Positives = 202/440 (45%), Gaps = 22/440 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 +N+ I++ LLLV G + + + IA K G ++ ++ Sbjct: 1 MNVVISISLLLVWAGDGL---AQSREYIDVRAPITKKYVIATPKLQGPGGSGPELGAALA 57 Query: 71 ----KDLQRSDVFNLISQDSFKQKITNPD-SIPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +DL+ S F ++ ++ P S + + ++LG +++ G +EG +L Sbjct: 58 VQADQDLRLSGHFTVLDPGTYDSSPIGPSPSTGQLHNLSALGCNLVIAGGWRQEG-GQLV 116 Query: 126 VEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++ +L D + ++GK++ +++ +++ +TGE+G R+ F+S Sbjct: 117 LDLKLIDPGSGQMLVGKRYRGGANDGQRMMTQFVNEVVLFLTGERGVPQGRLAFIS---- 172 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G L VMD G + LT R + P +SP+ Q+V + +Y +Y ++ Sbjct: 173 GGTDVRELYVMDI-GGTPKQLTRYR-TLTLTPSWSPDGQEVFFCSYR-GGFPALYAVNPG 229 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +++ ++ + P G ++ K +IY +D Q N +RLT + I+I Sbjct: 230 SGS-IRKLSTHGTLNVTPAGGPRG-LLAATLNKSGDQEIYLLDRQGNIKQRLTQSPGIDI 287 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD +Q+ F S+R G Q+Y++ + G +R++ + P WSP+GDLIA+ Sbjct: 288 SPTFSPDGAQVAFVSNRGGNPQIYIVSTGGGQPRRLTFGGTYNV-SPAWSPRGDLIAYAS 346 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-N 424 +G F I V+ G R + + + ++PTWSP G + S + G S +Y +++ Sbjct: 347 RTGGGFQIFVISPQGGGARQITREGSNESPTWSPDGSFIACSSTRGGT--SAIYLVNVKT 404 Query: 425 GRNETLINTPAYASDPQWVG 444 G L P + P W Sbjct: 405 GTATRLTTMPGAQTQPAWAP 424 >gi|153003575|ref|YP_001377900.1| TolB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027148|gb|ABS24916.1| TolB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 437 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 107/420 (25%), Positives = 196/420 (46%), Gaps = 20/420 (4%) Query: 37 KVATNSANYSPVSIAFTKFVSI--DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP 94 + S ++ P+ IA +F D V+EVV DL S +F+++ F + Sbjct: 29 TLTIGSPSFQPLPIAVAQFQGEGGDARAAGVTEVVRGDLSLSGLFDVLDPRGFLADPSEG 88 Query: 95 DSIP--RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + P RF W+ +GA+ LV R+ ++ D L E L++V+ ++++ K+ ++ + R Sbjct: 89 WAAPTIRFARWSDVGAEGLVKARM-RQAGDELEAELHLYEVRAGREVLVKRLRAAASDPR 147 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 + H ISD+I + T E G F+++++ + L + D DG N R L R Sbjct: 148 ALGHRISDEIVRYYTREPGIFSTKLVAI----RKLRGHWELVMFDVDGKNPRVLLSER-T 202 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 IL P + P+ + V +Y + T DR +R+ + +S +G R Sbjct: 203 ILLAPCWRPDGRAVLLTSYRSGRPE--LWLYTLADRGFRRLAAIPNAYGG-VYSPDGTRV 259 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 ++ D++ ++ +RLT +++S S+SPD +++ F SDR G Q+Y+M Sbjct: 260 AFTITDRANSDVWVMNADGTGAKRLTREPALDLSPSWSPDGTRLAFVSDRSGTPQIYLMG 319 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVED-- 389 ++GS +R++ + P WSP+GD IAFT K F + V+ + + + + +D Sbjct: 320 ADGSSPRRLTFQGNYNQT-PAWSPRGDAIAFTARDERKVFDVFVVSPENGKIQRVTQDQG 378 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--TLINTPAYASDPQWVGFMD 447 + PTW+P+GR + + G ++ D G + S P W ++ Sbjct: 379 RTNEEPTWAPNGRLMALKTDRAG-ASFQVVVSDARGEKQTVVTGGGGGELSAPAWGPLVE 437 >gi|254362584|ref|ZP_04978681.1| TonB family auxiliary protein TolB [Mannheimia haemolytica PHL213] gi|153094190|gb|EDN75077.1| TonB family auxiliary protein TolB [Mannheimia haemolytica PHL213] Length = 396 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 99/408 (24%), Positives = 176/408 (43%), Gaps = 23/408 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFTKFVSIDELGGKVSEV 68 + + + ++ + T + A V+++ + IA F + + V+++ Sbjct: 1 MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAVVPFKASG-VPADVAQI 59 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL+ S F + + + + + W+++G +V G+V G V + Sbjct: 60 ISDDLRNSGKFTPLERSQMPAQPGSAAEVVA-DQWSAIGIDNIVVGQVSSTGGG-YNVAY 117 Query: 129 RLWDVKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +L D I F A R+ AHT+SD++++ +T +G F ++I +V + Sbjct: 118 QLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKLTQIRGAFRTKIAYVVQR 177 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 VS L V D DG N +T S++ L P +SP+ ++AY T++++ +V + D Sbjct: 178 GVS---SYELRVSDYDGFNAFTITTSKEP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHD 232 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R A + + + AP FS +G R + +D ++IY V +LT Sbjct: 233 IRSG-ARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVGSGGGTPSKLTANAGN 291 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N S+SPD S I F SDR G Q+Y M S+G + SY V S +LI Sbjct: 292 NTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPM--GGSGSYNAKVSSDGKNLIMI 349 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + +L ++P+ SP+G +I+S K Sbjct: 350 A-----GDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG 392 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 5/168 (2%) Query: 270 KRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + VQ+ + ++ D +T + +S +SPD S++ + + K Q+ Sbjct: 169 TKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAYVTFENKKAQV 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 V ++ ++ K + P +SP G IAF + I V+ G L Sbjct: 229 VVHDIRSGARRVVAALKGHN-GAPSFSPDGSRIAFASNQDGELNIYVVGSGGGTPSKLTA 287 Query: 389 D-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + N P+WSP G ++ F+ + G ++Y + +G + + Sbjct: 288 NAGNNTEPSWSPDGSTIYFTSDRAGS--PQVYRMSSSGGGASPMGGSG 333 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 314 SQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++I + R +L V +G + I+ KE P WSP G +A+ F +K Sbjct: 169 TKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKE-PLMSPEWSPDGSRLAYVTFENKKAQ 227 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETL 430 + V R++ + AP++SP G + F+ +DG+ +Y + G L Sbjct: 228 VVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGE--LNIYVVGSGGGTPSKL 285 Query: 431 INTPAYASDPQWVG 444 ++P W Sbjct: 286 TANAGNNTEPSWSP 299 >gi|189346278|ref|YP_001942807.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobium limicola DSM 245] gi|189340425|gb|ACD89828.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobium limicola DSM 245] Length = 444 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 109/441 (24%), Positives = 192/441 (43%), Gaps = 24/441 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAF----TKFVSIDELGGKVSEV 68 +L L FF ++HA +A +++ K L + V Sbjct: 16 AALVLTFLSFAFFSPALHAEASGEYIAIRKQGAGKIALVLDRSDAKGSKESGLAQNLDSV 75 Query: 69 VSKDLQRSDVFNLISQDSFKQKIT-NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 V + L SD+F+++ S + + F +S+GA+V G V ++ ++ ++ Sbjct: 76 VKEGLIFSDLFSVLPPPSNVRTGSEGKGLAVNFGALSSVGAEVYAGGTVSRKS-GKVNLD 134 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++D K ++ K + S R + H D+ + +TG+K F S+I+FVS S Sbjct: 135 MEVYDTFGTKLLMKKTYTGSEDQLRAMGHAFCADLIELLTGKKSYFGSKIVFVSNKTGS- 193 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + D DG I+ LT R I P FSP+ ++AY +Y +Y+ + Sbjct: 194 ---KEIYQCDFDGQGIQQLTNFRS-ISLTPVFSPDGTRLAYTSYTSGKP-TLYIRSMSDN 248 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 N + + P + NG ++ + +IY + + RLTN+ I++S Sbjct: 249 SIAAVGKN--GVSVDPGWR-NGSEVATTLSFEGDQEIYLIRSDGGISRRLTNSRGIDVSP 305 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD Q+ F S R G Q++V +R++ + P WSP GD IA++ + Sbjct: 306 TFSPDGKQMAFVSSRNGMPQIFVQDVQSGQTRRLTYSGRYN-TQPSWSPSGDKIAYSTWE 364 Query: 368 -GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + I V+ DGS + L ++P+WSP G ++F+ + G G KLY + G Sbjct: 365 KSGEINIFVINADGSGVKRLTSGVRENESPSWSPDGSMIVFTSNRQG--GKKLYVMSSTG 422 Query: 426 RNE-TLINTPAYASDPQWVGF 445 ++ L+ P W F Sbjct: 423 GSQRRLLQMDGEQMQPSWSLF 443 >gi|82523864|emb|CAI78812.3| TolB protein [uncultured candidate division WS3 bacterium] Length = 464 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 192/436 (44%), Gaps = 33/436 (7%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKV--ATNSANYSPVSIAFTKFVSIDE------LGG 63 + L L P + A ++ ++ + + +F L Sbjct: 23 TTRSTFLLAAFLAVAVVPAQVSAQREIYLGIHTTGAQRIQLLVDEFTCETGPLSIRVLAH 82 Query: 64 KVSEVVSKDLQRSDVFNLISQDSF-----KQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 + SE++ DL S + + Q +T+ D RF GR+ Sbjct: 83 QASEILRNDLDTSGLIQTTGGSTLRQELGLQTLTSVDLKKRF--------DAATQGRLTV 134 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 EG D + VE L+DV K + + +S +++R H ++D +++TGE G ++I Sbjct: 135 EGSD-IVVEAELYDVPTEKMVASFRRRASESTFRSTIHQMADHFLRTLTGETGIAETKIA 193 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 V E + +C MD DG N+ L + D I P +SP +VAY +Y Sbjct: 194 VVREIGG----RMDICAMDYDGHNLVPLVENGD-INLLPAWSPLGNEVAYTSY-VGGEPA 247 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +Y+++ KR+ + + +S +GK + + + +I+ V +++T Sbjct: 248 LYVLNLETG-VRKRLATPGGLNTSAAWSPDGKSLAFAATRGKDPEIFVVRRDGTVLDQIT 306 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I+ S ++SP+ +I F SDR G Q+YVM ++G++ +R++ + S P WSP G Sbjct: 307 FHPAIDCSPTWSPNGHEIAFTSDRSGTPQIYVMSADGTNVRRLTYEGNYSD-SPAWSPSG 365 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 D IAFT G +F I V+ G L + + + P W+P GR + + + G S Sbjct: 366 DRIAFTSRIGGRFRICVIAAQGGPVYPLTDGPGDHENPAWAPDGRHVAYVSNEGG--MSA 423 Query: 418 LYSIDLNGRNETLINT 433 +Y ++ +G N I++ Sbjct: 424 VYVVNADGTNRRRISS 439 >gi|21673468|ref|NP_661533.1| TolB protein, putative [Chlorobium tepidum TLS] gi|32699704|sp|Q8KEQ0|TOLB_CHLTE RecName: Full=Protein tolB; Flags: Precursor gi|21646573|gb|AAM71875.1| tolB protein, putative [Chlorobium tepidum TLS] Length = 434 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 103/439 (23%), Positives = 186/439 (42%), Gaps = 26/439 (5%) Query: 16 NLCLLLVLIGGFF-PTSIHAFV---KVATNSANYSPVSIAFTKFVSID----ELGGKVSE 67 CL ++L G F P ++ A +A S +++ K + E + Sbjct: 8 FACLCIMLFGMLFVPFTLRAEEVGEYIAIRKEGASRIAVVLDKTSADGGKQREWARSLDV 67 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 ++K L + +FNL+ + N F S+G + G V K R +E Sbjct: 68 TINKGLDFTGLFNLLPAPLNIRNGQNGGL--NFASIASVGGDIYAGGSVTKRS-GRPVLE 124 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++D K ++ + + + R I D+ + +TG++ F +RI+FV+ + Sbjct: 125 MHVYD-SSGKSLLARTYTGEESQLRAIGLRFCADLVELLTGKRSVFGTRIVFVANRTGN- 182 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + D DG N+ LT SR I P SP+ +A+ Y +Y+ + Sbjct: 183 ---KEIYMCDFDGENVVQLTNSRS-ISLTPAVSPDGTYIAWTDYTSGKP-NLYIKNIATG 237 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 K N + ++P + + ++ + D+Y + RLT I++S Sbjct: 238 A--KVSVNKHGVCISPAWRPGTNTLVTTLSYEGDQDLYLIRADGTVERRLTKGGGIDVSP 295 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD S++ F S R+G Q+++ N +R++ + P WSP GD I ++ Sbjct: 296 TFSPDGSKMAFVSTRQGGPQIFIQDMNSGQVRRLTYSGIYN-TQPSWSPNGDKILYSSMQ 354 Query: 368 -GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + I + DGS L N + P+WSP G ++FS +DG +LY ++ +G Sbjct: 355 KSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSPDGSMIVFSSTRDGRR--RLYVMNADG 412 Query: 426 RNET-LINTPAYASDPQWV 443 N+ L+N P W Sbjct: 413 SNQRPLLNMQGEQQQPSWS 431 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 6/178 (3%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G R + + +IY D +LTN+ I+++ + SPD + I + GK L Sbjct: 170 GTRIVFVANRTGNKEIYMCDFDGENVVQLTNSRSISLTPAVSPDGTYIAWTDYTSGKPNL 229 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y+ + +S +K P W P + + T + +++ DG+ ER L + Sbjct: 230 YIKNIATGAK--VSVNKHGVCISPAWRPGTNTLVTTLSYEGDQDLYLIRADGTVERRLTK 287 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 + +PT+SP G + F + G G +++ D+N G+ L + Y + P W Sbjct: 288 GGGIDVSPTFSPDGSKMAFVSTRQG--GPQIFIQDMNSGQVRRLTYSGIYNTQPSWSP 343 >gi|114776298|ref|ZP_01451343.1| translocation protein TolB precursor [Mariprofundus ferrooxydans PV-1] gi|114553128|gb|EAU55526.1| translocation protein TolB precursor [Mariprofundus ferrooxydans PV-1] Length = 421 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 116/435 (26%), Positives = 197/435 (45%), Gaps = 20/435 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGK---VSEVV 69 M++ LLL L ++ ++Y P+ +A + G V +VV Sbjct: 1 MRVFAFLLLFLATASHVSAA----DFDIYQSDYRPLQVALLV-EGEADAPGDRTMVRQVV 55 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 S DL S F I +F + + + DW +GA +L ++ L+ + Sbjct: 56 SHDLASSQSFKPIDPMAFLVSPDSAPASVDYGDWRLIGADILAICKLRTV-NGVLQADVH 114 Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 ++D KQ++ S R +AH ++D IYQ+ G G F S +L+V++ Sbjct: 115 VYDPFRGKQLLSLVLEGSKPGLRVLAHRVADQIYQAALGIPGYFTSHVLYVTKHGD---- 170 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L MD+DGAN R + +L P +SP+ +VA TY + R+ + R Sbjct: 171 LSDLVYMDQDGAN-RQVVGKNFTLLLSPDWSPDGNEVALNTY-VGNHPRLEFFNLRTGS- 227 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K G F+ + P FS +G+ ++ ++I+ D++ T+ I+ + ++ Sbjct: 228 RKAFGEFKGLNSTPEFSPDGRYVAATLSDKNDINIHIYDVKKGTWRAFTHGHAIDTTPTW 287 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD I F S+R GK Q+Y +G + +S + P WSP GD IA Sbjct: 288 SPDGKWIAFVSNRSGKPQIYRKPLSGGRAQLVSTSGTYN-TSPAWSPTGDRIAMISLKNW 346 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 FA+ +K DG+ R L +++P+WS +G+ L++S ++ G +LY + G Sbjct: 347 SFAVATVKPDGTDIRYLATGKRVESPSWSSNGQMLLYSAEEHGIR--RLYRVPSWGGTPE 404 Query: 430 LINTPA-YASDPQWV 443 + +PA ASDP W Sbjct: 405 AVTSPAIDASDPAWS 419 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 L + + D+ +D + + + +S +SPD +++ + +L Sbjct: 160 SHVLYVTKHGDLSDLVYMDQDGANRQVVGKNFTLLLSPDWSPDGNEVALNTYVGNHPRLE 219 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +K + + P +SP G +A T I + R Sbjct: 220 FFNLRTGSRKAF-GEFKGLNSTPEFSPDGRYVAATLSDKNDINIHIYDVKKGTWRAFTHG 278 Query: 390 SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 + PTWSP G+ + F + G ++Y L+G L++T Y + P W Sbjct: 279 HAIDTTPTWSPDGKWIAFVSNRSGK--PQIYRKPLSGGRAQLVSTSGTYNTSPAWSP 333 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 7/139 (5%) Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 S +++ + L M +G++ +++ P WSP G+ +A + G + Sbjct: 160 SHVLYVTKHGDLSDLVYMDQDGAN-RQVVGKNFTLLLSPDWSPDGNEVALNTYVGNHPRL 218 Query: 374 GVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI-----DLNGRN 427 + E P +SP GR + + D +Y + Sbjct: 219 EFFNLRTGSRKAFGEFKGLNSTPEFSPDGRYVAATLSDKNDINIHIYDVKKGTWRAFTHG 278 Query: 428 ETLINTPAYASDPQWVGFM 446 + TP ++ D +W+ F+ Sbjct: 279 HAIDTTPTWSPDGKWIAFV 297 >gi|78189865|ref|YP_380203.1| TolB protein, putative [Chlorobium chlorochromatii CaD3] gi|119371039|sp|Q3APB5|TOLB_CHLCH RecName: Full=Protein tolB; Flags: Precursor gi|78172064|gb|ABB29160.1| TolB protein, putative [Chlorobium chlorochromatii CaD3] Length = 440 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 102/442 (23%), Positives = 196/442 (44%), Gaps = 21/442 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSE 67 ++ L L ++ P +A A + +++ F + L + + Sbjct: 10 HVTCALLLCTPMLALPHPIIAADTEYIAIRKAGSTSIALVLDTFEVTTGTSPALARQATT 69 Query: 68 VVSKDLQRSDVFNLI-SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +V L + +F L+ + K S F+ +S+G G + G + + Sbjct: 70 LVRDGLDFTGLFTLLQPPLNVKTSSLFSSSTINFKALDSIGGAFYAVGTLSSSG-GEITL 128 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++++V K + GK++ + + R ++H S D+ + +TG+K F S+I+F+S S Sbjct: 129 DGQVFEVATGKVLFGKRYRGTESQLRALSHAFSGDVVEFLTGKKSVFGSQIVFISNKSGS 188 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + D DGAN+ LT R I P SP+ +A+ + + Sbjct: 189 ----KEIYSCDFDGANVHQLTNFRS-IALTPALSPDGAYLAFTDFTGGKP--ALAIRELA 241 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R+ + + P + N + + + ++Y +D +RLT++ I++S Sbjct: 242 TGKTTRVAK-KGNSIDPAWR-NSRELATTFSFEGDQELYLLDSAGAVKQRLTSSSGIDLS 299 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++SPD ++ F S R G Q++V + +R++ + P WSP GD IAF+ + Sbjct: 300 PTFSPDGRKMAFVSARSGNPQIFVYDFSSGKSQRLTFSGRYN-TQPAWSPIGDKIAFSTW 358 Query: 367 -SGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + I V+ DGS +L + ++P+WSP GR ++F+ + G KLY + + Sbjct: 359 ESGGEINIFVINTDGSGLTQLTTQSGENESPSWSPDGRMIVFASNRQG--VKKLYVMMAD 416 Query: 425 GRNET-LINTPAYASDPQWVGF 445 G+N+ L+ + P W F Sbjct: 417 GKNQRPLLAIGGEQTQPSWSLF 438 >gi|289674677|ref|ZP_06495567.1| translocation protein TolB [Pseudomonas syringae pv. syringae FF5] Length = 312 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 162/317 (51%), Gaps = 9/317 (2%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E++S Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDREGKE 326 D S + F SDR GK Sbjct: 296 GKDGSTLYFTSDRGGKP 312 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 13/173 (7%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATERLTNTLF 302 D++ +++ + FS+ + ++ ++ + + D L + Sbjct: 148 DQSFEKLTGIKG-----AFST--RMLYVTAERFSENNTRYTLQRSDYDGARAVTLLQSRE 200 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 +S ++PD +I + S + + +++V + +++I+ + E P WSP G +A Sbjct: 201 PILSPRFAPDGKRIAYVSFEQKRPRIFVQHIDTGRREQIT-NFEGLNGAPAWSPDGSKLA 259 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT 414 F I V+ Q + DS++ P + G +L F+ + G Sbjct: 260 FVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFGKDGSTLYFTSDRGGKP 312 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S+ + L +G+ + Q +E P ++P G IA+ F ++ I V D Sbjct: 174 SENNTRYTLQRSDYDGARAVTLLQSRE-PILSPRFAPDGKRIAYVSFEQKRPRIFVQHID 232 Query: 380 GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA 437 + + + AP WSP G L F KDG ++Y I+L R + N + Sbjct: 233 TGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG--NPEIYVINLASRQLSRVTNDSSID 290 Query: 438 SDP 440 ++P Sbjct: 291 TEP 293 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + ++ + DG++ L++ + +P ++P G+ + + + + ID Sbjct: 174 SENNTRYTLQRSDYDGARAVTLLQSREPILSPRFAPDGKRIAYVSFEQKRPRIFVQHID- 232 Query: 424 NGRNETLINTPAYASDPQWVG 444 GR E + N P W Sbjct: 233 TGRREQITNFEGLNGAPAWSP 253 >gi|322418108|ref|YP_004197331.1| Tol-Pal system beta propeller repeat-containing protein TolB [Geobacter sp. M18] gi|320124495|gb|ADW12055.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp. M18] Length = 406 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 113/423 (26%), Positives = 192/423 (45%), Gaps = 35/423 (8%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID---ELGGKVSEVVSKDLQRSDVFNL 81 + ++ V ++ ++IA T +S E ++ E+ DL + F + Sbjct: 12 APQLGLAAEGYIDVTAPASGKMRLAIAPTTPLSGTVPAEAARELPELFGFDLGIAGPFEI 71 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 S D L+ D + +E RL D +++ Sbjct: 72 TSSDPAGS--------------------ALLLKSAYGTEGDTVIIECRLVDQVRNREVTA 111 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 K++ R++AH SD++ +++TGEKG F +I +VS+ + + +MD DG Sbjct: 112 KRYSGRAKDLRRMAHAFSDEVLRALTGEKGPFTGKIAYVSKISGN----KEIFLMDYDGR 167 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + LT + I P F+P+ +++ Y +Y + +Y + RI + + Sbjct: 168 NPQRLTNNGS-INLYPDFAPSGKELIYTSYKKGNP-DLYRRELFTG-LEARISSRSGLNA 224 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 FS +G R + + KD ++Y + RLT I+IS S+SPD S++ F SD Sbjct: 225 MGVFSPDGSRVALVLSKDGNSEVYQIARDGKEVARLTKNHAIDISPSWSPDGSRVAFVSD 284 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R GK QL+VM +NG + +R++ + P WSP+GD I + + G F I + DGS Sbjct: 285 RLGKPQLFVMDANGGNVRRLTTSGAYNVT-PRWSPKGDRIVYARKEGG-FQIYAINPDGS 342 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDP 440 Q+ L + + P +SP GR ++FS +DG G LY + +G +T I A + P Sbjct: 343 QDTQLTSAGSNEHPRYSPDGRFIVFSSTRDGGEG--LYLMRADGTGQTRISPNKAQNTHP 400 Query: 441 QWV 443 W Sbjct: 401 TWS 403 >gi|108760781|ref|YP_633893.1| tolB protein [Myxococcus xanthus DK 1622] gi|32699694|sp|Q84FF7|TOLB_MYXXA RecName: Full=Protein tolB; AltName: Full=Adventurous gliding motility protein W; Flags: Precursor gi|118574586|sp|Q1D0D0|TOLB_MYXXD RecName: Full=Protein tolB; Flags: Precursor gi|27804811|gb|AAO22855.1| adventurous gliding motility protein W [Myxococcus xanthus] gi|108464661|gb|ABF89846.1| tolB protein [Myxococcus xanthus DK 1622] Length = 431 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 108/426 (25%), Positives = 192/426 (45%), Gaps = 24/426 (5%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFV----SIDELGGKVSEVVSKDLQRSDVFNLISQD 85 A + + AN+ P+ +A + L S DL S + ++ + Sbjct: 16 ALAQAP-TIEISGANFRPLPVAVPAPLTQNDGAKALVAPFDSAFSFDLTASGILQVLDRK 74 Query: 86 SFKQKITN--PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK 143 F + F W +GA+ LV + ++G LR E RL++V ++ + Sbjct: 75 GFTADAKEGMAAASINFSRWADVGAEALVKVSLAQDG-GVLRGELRLFNVGTGREDLKVS 133 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + +AH ++D +Y+ T E F SRI +V ++ + + V D DG N Sbjct: 134 KDAPADNASLLAHRLADALYRHFTREPSPFLSRITYVRKAGTN----RDVYVADWDGGNA 189 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 R LT I P S + +VA+ TY ++ +Y+ K + + M Sbjct: 190 RALTKG--GINILPALSQDGSQVAFTTYR-KNRPDIYVQSP--GGEAKAVISGGQMATGA 244 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDR 322 FS +GKR S+ + E+ +Y + + LT+T +N S ++SPD +I F S+R Sbjct: 245 AFSPDGKRIAYSLAEGESAQVYVANADGSGARALTDTPYGLNTSPTWSPDGKRIAFVSNR 304 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGS 381 G Q+Y+M ++G+ +R++ + P WSP+GDLI FT F + + + Sbjct: 305 GGSPQVYIMNADGTGVRRLTFQGNYNQT-PDWSPRGDLIVFTARDERNAFDLFTVSVETG 363 Query: 382 QERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASD 439 + L +D + + P +SP+GR ++F+ ++G GS+LY + +G N+ + T Sbjct: 364 KVTRLTQDQGSNEEPAFSPNGRLIVFTSTRNG--GSQLYVMTADGNNQLPLRTEKGTYQT 421 Query: 440 PQWVGF 445 P W Sbjct: 422 PDWSPL 427 >gi|189500640|ref|YP_001960110.1| WD40 domain-containing protein beta Propeller [Chlorobium phaeobacteroides BS1] gi|189496081|gb|ACE04629.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides BS1] Length = 444 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 102/439 (23%), Positives = 180/439 (41%), Gaps = 20/439 (4%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSI--AFTKFVSIDELGGKVSEVVSKD 72 I LC ++ F + ++K+ A+ P+ + + + + V+ Sbjct: 17 ILLCCFALMPSSLFGEPVKEYIKITKAGADRIPLVLRSVDVERSKDAQYANGIDRVIKNG 76 Query: 73 LQRSDVFNLISQDSFKQKITNPDSI----PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 L+ S +F +++ N F +S+GA+V G V+K + L ++ Sbjct: 77 LEFSGLFAILNSPMNLISGGNIYQTGKRQINFPALSSVGAEVYA-GGVLKRKGNTLHMDM 135 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 ++D K ++ K + R + H DD+ + TG+ F S+I +VS Sbjct: 136 EVYDALTGKLLMRKLYEGKREDTRSLGHRFCDDLVRLFTGKPSIFGSKIAYVSRR----N 191 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + D DG +T + + P S + ++AY TY L + + Sbjct: 192 GKKEIYLADFDGYGEVPVTRTG-GLALTPALSSDGSQLAYLTYTRGRP---DLQIKDLSK 247 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + + P + + D +IY V + RLT I++S S Sbjct: 248 KTVVSVTRKGVKIDPAWRKGSTELATTFSFDGNQEIYLVRKNGSIVRRLTRDRGIDLSPS 307 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS- 367 +SPD + F S R G Q+++M N KR++ + + P WSP D IAFT Sbjct: 308 FSPDGRYMAFVSSRHGLPQVFIMDLNSGSTKRLTFKGKYN-TQPAWSPVNDKIAFTTMQK 366 Query: 368 GEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + I + DG+ + L +AP+WSP G ++FS + G SKLY ++ +GR Sbjct: 367 NGEIDIFTVNADGTGLKQLTYRARQNEAPSWSPDGTMIVFSSSRGG--ASKLYVMNADGR 424 Query: 427 NETLINTPAYASDPQWVGF 445 N+ + P W F Sbjct: 425 NQRSLKLAGEQMQPCWSSF 443 >gi|193212307|ref|YP_001998260.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobaculum parvum NCIB 8327] gi|193085784|gb|ACF11060.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobaculum parvum NCIB 8327] Length = 434 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 102/440 (23%), Positives = 191/440 (43%), Gaps = 24/440 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSE 67 +++ + L + + F + +A +SI S E + Sbjct: 8 SVRTLIALFCLFMVPFTIRAEEVNEYIAIRKEGSGRISIILDHLKSNGGKESEWARSLDS 67 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 + L + +FNL+ + N S+GA V V G V K+ D ++ Sbjct: 68 TIQGGLDFTGLFNLMPAPLNIRNAQN--GALNLGAVRSIGADVFVGGSVTKQSGDP-AMQ 124 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++WDV K ++ +K+ + R I D+ + +TG++ F ++++FVS S Sbjct: 125 MQVWDV-TGKLLLNRKYSGQDKALRDIGLRFCADLVEMLTGKRSVFGTKMVFVSNSTG-- 181 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLMDTRI 246 + + + D DG NIR LT ++ I P SP+ + +A+ + L + + T Sbjct: 182 --QKEIYMCDFDGTNIRQLTNTKS-ISLTPSVSPDGRFLAWTDFSSGRPDLYIKNLSTGS 238 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + K+ + + ++P + ++ + + D+Y + RLT I +S Sbjct: 239 TVSVKK----QGVCISPAWRPGTNECATTLSYEGSQDLYLIRADGTVARRLTRGHSIEVS 294 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK- 365 S+SPD S++ F S REG Q+++ + +R++ + P WSP GD I ++ Sbjct: 295 PSFSPDGSKMAFVSTREGPPQIFIQDLSSGSVRRLTYSGTYN-TQPSWSPSGDKILYSSL 353 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + I ++ DGS L + N + P+WSP G ++FS + G KLY ++++ Sbjct: 354 QKNGEINIFMINVDGSNLLQLTSGARNNEYPSWSPDGSMIVFSSTRAGSR--KLYVMNVD 411 Query: 425 GRNET-LINTPAYASDPQWV 443 G N+ L+N P W Sbjct: 412 GTNQRPLLNMKGEQQQPSWS 431 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 6/178 (3%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + +IY D +LTNT I+++ S SPD + + G+ L Sbjct: 170 GTKMVFVSNSTGQKEIYMCDFDGTNIRQLTNTKSISLTPSVSPDGRFLAWTDFSSGRPDL 229 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y+ + +S K+ P W P + A T + +++ DG+ R L Sbjct: 230 YIKNLSTGST--VSVKKQGVCISPAWRPGTNECATTLSYEGSQDLYLIRADGTVARRLTR 287 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 +++ +P++SP G + F ++G +++ DL+ G L + Y + P W Sbjct: 288 GHSIEVSPSFSPDGSKMAFVSTREGP--PQIFIQDLSSGSVRRLTYSGTYNTQPSWSP 343 >gi|310823648|ref|YP_003956006.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|309396720|gb|ADO74179.1| Protein TolB [Stigmatella aurantiaca DW4/3-1] Length = 424 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 116/423 (27%), Positives = 194/423 (45%), Gaps = 25/423 (5%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELG----GKVSEVVSKDLQRSDVFNLISQDSF 87 A V + + AN+ P+ +A+ + +D+ G E DL+ S +F ++ + SF Sbjct: 17 AQAPV-IQISGANFRPLPLAYPAPLPVDDGGKKSSADFDEPFLFDLRASGLFQVLDRASF 75 Query: 88 KQKITN--PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 F W+ +GA+ LV ++ EG LR E RL++V ++ Sbjct: 76 TADAKEGITAGSINFTRWSDVGAESLVKVQLGAEG-GTLRGELRLFNVGSGREDFKASHA 134 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + R++AH ++D +Y+ +T E F SRI+FV ++ + + D DG N R Sbjct: 135 VPTSEPRQLAHFLADALYRHLTREPSPFLSRIVFVRKARDN----RDVWTADWDGNNARA 190 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 LT I P P+ VA+ +Y L + + I M F Sbjct: 191 LTTG--GINLLPALGPDG-TVAFTSYRRGQP---DLYLQKEGGEARPIVQNGQMATGVAF 244 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREG 324 S +GKR + + E+ IY ++ + +R+T+T IN S S+SPD ++ F S+R G Sbjct: 245 SPDGKRIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSPSWSPDGKRLAFVSNRGG 304 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQE 383 Q+YVM +G++ +R++ + P WSP+GDLIAFT F + + D + Sbjct: 305 SPQIYVMNVDGTNARRLTFQGNYNQT-PDWSPRGDLIAFTARDERNAFDLFTVNVDTGKI 363 Query: 384 RLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQ 441 L +D SN + P +SP+GR ++FS + G +L+ + G N + P Sbjct: 364 TRLTQDQSNNEEPVFSPNGRLILFSSTRTGT--PQLFVMTAEGNNPLALPMGKGGGLTPD 421 Query: 442 WVG 444 W Sbjct: 422 WAP 424 >gi|297568868|ref|YP_003690212.1| WD40 domain protein beta Propeller [Desulfurivibrio alkaliphilus AHT2] gi|296924783|gb|ADH85593.1| WD40 domain protein beta Propeller [Desulfurivibrio alkaliphilus AHT2] Length = 431 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 194/427 (45%), Gaps = 27/427 (6%) Query: 29 PTSIHAFVKVATNSANYSPVSIAFTKFVS------IDELGGKVSEVVSKDLQRSDVFNLI 82 P + A + + S +++A V + G ++++++S+ ++ I Sbjct: 21 PGQVAARIYLDITSPELRKIAMAIPPLVDRAKDDQPTDSGRQMADILSRAMELHGFSETI 80 Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + ++ + +W GA+ ++ G + G ++E RL D+ + I G+ Sbjct: 81 DPKLYGER--------QDANWQRHGAEFVIQGSYREIG-GNFQLELRLLDINAGRMIHGR 131 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 ++ + R+ D+ + +TG+KG NS+I FVS++ + + D G N Sbjct: 132 RYQAPRELVRRQLLRYIDESVEVLTGKKGISNSKIAFVSDATG----HKEIHLADILGDN 187 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 +R +T + PRF+ + + + Y ++ + +Y + R + + I + + + Sbjct: 188 VRQVTR-HQYLAVSPRFTRDGEHLTYTSHHRGNA-NLYQTNIRELKTTRAISRWVGLNMT 245 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P ++ + R ++++ +D D+Y + RLT+ +N+S S+SPD ++ F SDR Sbjct: 246 PTWAPDDNRMVLTLSRDGNPDLYLTERTGKIIRRLTHGEGVNVSPSFSPDGRRLAFVSDR 305 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G Q+Y+M +R++ + P WSP G IA+T I V+ +G Sbjct: 306 SGTPQIYLMDMRTMAIQRLTFQGHDN-TTPSWSPDGKWIAYTSRIDGVLHIAVISPEGGP 364 Query: 383 ERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTPAYASD 439 R + + ++P+WSP R L+F+R + +L +I L+G ++ + S Sbjct: 365 PRQVTRTWGHHESPSWSPDSRQLVFARLRHDR--EELCAIFLDGSGLRVLFGDQSGNHSM 422 Query: 440 PQWVGFM 446 PQW + Sbjct: 423 PQWSPRL 429 >gi|330896134|gb|EGH28355.1| translocation protein TolB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 308 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 160/313 (51%), Gaps = 9/313 (2%) Query: 14 KINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 INL L+++ F + A + V + S +P+++ + + L ++E++S Sbjct: 1 MINLFRGLLVVLCFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIIS 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S + I + + T + F+DW +LGAQ ++ G + G RL++++ L Sbjct: 61 NDLRNSGYYAPIPKQNMISLPTQASEVI-FRDWKALGAQYVMVGNITPAG-GRLQIQYAL 118 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS-GII 189 ++V +Q++ + R +AH I+D ++ +TG KG F++R+L+V+ S Sbjct: 119 FNVATEQQVLTGNVSGTNDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNT 178 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +L D DGA L SR+ I PRF+P+ +++AY +++ + R+++ R Sbjct: 179 RYTLQRSDYDGARAVTLLQSREPI-LSPRFAPDGKRIAYVSFEQKRP-RIFVQHIDTGR- 235 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++I NF + AP +S +G + + KD +IY ++L S R+TN I+ + Sbjct: 236 REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFF 295 Query: 310 SPDSSQIVFESDR 322 D S + F SDR Sbjct: 296 GKDGSTLYFTSDR 308 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 69/169 (40%), Gaps = 13/169 (7%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATERLTNTLF 302 D++ +++ + FS+ + ++ ++ + + D L + Sbjct: 148 DQSFEKLTGIKG-----AFST--RMLYVTAERFSENNTRYTLQRSDYDGARAVTLLQSRE 200 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 +S ++PD +I + S + + +++V + +++I+ + E P WSP G +A Sbjct: 201 PILSPRFAPDGKRIAYVSFEQKRPRIFVQHIDTGRREQIT-NFEGLNGAPAWSPDGSKLA 259 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKK 410 F I V+ Q + DS++ P + G +L F+ + Sbjct: 260 FVLSKDGNPEIYVINLASRQLSRVTNDSSIDTEPFFGKDGSTLYFTSDR 308 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S+ + L +G+ + Q +E P ++P G IA+ F ++ I V D Sbjct: 174 SENNTRYTLQRSDYDGARAVTLLQSRE-PILSPRFAPDGKRIAYVSFEQKRPRIFVQHID 232 Query: 380 GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA 437 + + + AP WSP G L F KDG ++Y I+L R + N + Sbjct: 233 TGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG--NPEIYVINLASRQLSRVTNDSSID 290 Query: 438 SDP 440 ++P Sbjct: 291 TEP 293 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + ++ + DG++ L++ + +P ++P G+ + + + + ID Sbjct: 174 SENNTRYTLQRSDYDGARAVTLLQSREPILSPRFAPDGKRIAYVSFEQKRPRIFVQHID- 232 Query: 424 NGRNETLINTPAYASDPQWVG 444 GR E + N P W Sbjct: 233 TGRREQITNFEGLNGAPAWSP 253 >gi|187251684|ref|YP_001876166.1| putative component of the Tol biopolymer transport system [Elusimicrobium minutum Pei191] gi|186971844|gb|ACC98829.1| Putative component of the Tol biopolymer transport system [Elusimicrobium minutum Pei191] Length = 428 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 107/443 (24%), Positives = 209/443 (47%), Gaps = 23/443 (5%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSP-VSIAFTKF-VSIDELGGKV 65 +++ + I L +LL+ ++ +A+ N P + IA K+ + +V Sbjct: 1 MKKIKLLI-LAMLLICTAAISYAQSDVYIGIASRGGNALPKLGIAQFKYDEGSKKAAAQV 59 Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDW-NSLGAQVLVTGRVIKEGKDRL 124 +++ DL S F++ + KI + + ++W + ++ ++ G V EG+D Sbjct: 60 RDIMRADLMFSRHFDISEKGP---KIDTANIVKTLEEWQKNTFSEFVLYGEVSSEGED-F 115 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 + +++ ++K + + + + R+++H SD + + +TG++G ++RI F + + Sbjct: 116 IINIFIYNTSEKKPVFARSYRGKENALRRLSHIASDQVVKELTGKRGIADTRIAFANSAT 175 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + + + D DGAN++ LT R I PR+S + K+ Y +Y ++ + Sbjct: 176 GN----KEIYIADYDGANLKKLTTDRS-IALLPRWSKDG-KIYYTSYRYKNPDVFSIDLA 229 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 +P I + + L S +G+ +++ I+ ++L++ + +LT+ ++ Sbjct: 230 AGKVSPVAIT--KGLELIGGVSPDGRSIILTRSGGTNPSIFEINLETGKSVQLTDKAGVD 287 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S SYSPD I F S+R G Q+YVM +RI+ + P WSP G+ I F Sbjct: 288 GSPSYSPDGRFITFVSNRSGNPQIYVMDLQNGSTRRITSSLNWADT-PQWSPTGEWIVFA 346 Query: 365 KFSG--EKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + I ++ G+Q R L DS N + PTWSP GR + F+ + G +LY + Sbjct: 347 GRTAAQNPIDIFLVDITGTQIRQLTSDSANNEDPTWSPDGRFIAFTTTRKGRR--QLYVM 404 Query: 422 DLNGRNETLI-NTPAYASDPQWV 443 D +G L+ + P + P W Sbjct: 405 DADGSAPHLLADIPGNSYTPHWS 427 >gi|255020046|ref|ZP_05292119.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] gi|254970575|gb|EET28064.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Acidithiobacillus caldus ATCC 51756] Length = 436 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 104/433 (24%), Positives = 190/433 (43%), Gaps = 14/433 (3%) Query: 12 NMKINLCLLLVLIGGFFPTS-IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + L ++L G A + V A S +A F + ++++V Sbjct: 13 PRRPFLARAVLLCGTLALAPLAQATLLVHVAKAVRSSDPVAVPDFGAGPAGQPSIAQIVR 72 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +DL+ S F++I+ D + + W GA LV G V G+D RV+ + Sbjct: 73 QDLRYSGYFHVIAPDLYPADPHAVRGLSS-TAWTKTGALTLVLGSVQSAGQD-YRVQAYV 130 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ D K I ++F + AS+ ++ +++ +Y+++TG G F I FV + Sbjct: 131 VNLLDDKVIAARRFSGAAASYHQMGQDVANLVYRAVTGHPGPFRGHIAFVDARGG----Q 186 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L V DG + R + R ++ P +SP +AY +Y + + +Y+ + R + Sbjct: 187 FRLQVAASDGWHPRTVLRGRIPVI-SPAWSPGHGHLAYVSYRHQHSV-IYIQNLRNGQRR 244 Query: 251 KRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + G + AP +S G + V +I ++L LT +N S + Sbjct: 245 EVPG-HGAAQSAPAYSPGGHYLAFARVWGHGRTEIVRLNLADGQERVLTREGTVNTSPVW 303 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +P I+F S+R+G Q++ M NG +R+S + + P SP G I F Sbjct: 304 TPSGRHILFVSNRDGSAQIFQMNRNGGGVRRLSFNGGYNV-SPAISPNGRWIGFIHADAG 362 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 ++ VM + G R+L +N + P+++P GR L+F+ + G L + +NG+ Sbjct: 363 ILSLAVMDRQGGDLRVLYAGANCERPSFAPDGRMLLFNTHQGGRK--VLAEVAINGKGLH 420 Query: 430 LINTPAYASDPQW 442 + P A++ W Sbjct: 421 FLQLPGQANEGSW 433 Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 12/186 (6%) Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + + IS ++SP + + S R +Y+ Sbjct: 176 HIAFVDARGGQFRLQVAASDGWHPRTVLRGRIPVISPAWSPGHGHLAYVSYRHQHSVIYI 235 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVED 389 Q+R A+ P +SP G +AF + G + I + QER+L + Sbjct: 236 QNLRNG-QRREVPGHGAAQSAPAYSPGGHYLAFARVWGHGRTEIVRLNLADGQERVLTRE 294 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQ 441 + +P W+PSGR ++F +DG ++++ ++ NG ++ +PA + + + Sbjct: 295 GTVNTSPVWTPSGRHILFVSNRDGS--AQIFQMNRNGGGVRRLSFNGGYNVSPAISPNGR 352 Query: 442 WVGFMD 447 W+GF+ Sbjct: 353 WIGFIH 358 >gi|317051744|ref|YP_004112860.1| TolB protein [Desulfurispirillum indicum S5] gi|316946828|gb|ADU66304.1| TolB protein [Desulfurispirillum indicum S5] Length = 452 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 107/440 (24%), Positives = 202/440 (45%), Gaps = 18/440 (4%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDELG----GKVS 66 + L L+L G + + + + IA F S + L + Sbjct: 17 RILCALATALILTGVATADVAESEAFAIEVRPTGITSIPIAIPTFTSDNSLSAEFRENMR 76 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 ++ +DL + + ++ ++++ + PD ++DW +GA+ + + + G LR Sbjct: 77 ALILEDLSYAGIIKVLPREAYLAEPGRPD--VNYEDWLFIGAEFMASVSLFSTGT-HLRA 133 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E ++D+ +++ + F + + +AH ++D I ++G +G F +RI FVS+ S Sbjct: 134 EVAVYDMAMKRKKSKQSFEIAFDRYVTLAHRLADHILYEVSGVQGFFEARIAFVSDRTSS 193 Query: 187 -GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + ++ MD DG+N++ +T D I P + + KVA+ +Y + L D + Sbjct: 194 ANAVSKNIYAMDFDGSNLQPVTT-NDSININPFW-HSMSKVAFTSY-IRQRPEILLRDLQ 250 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R + F S +GK ++ + +IY + +LT I++ Sbjct: 251 SGR-TALLAAFGGTNTGGIPSPDGKYIAVTASHNGISNIYLLHSDGRMYRQLTRHWSIDV 309 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD + I F SDR G Q+Y++ + R++ + + PVWSP G+ IA+T Sbjct: 310 SPAWSPDGNFIAFVSDRPGSPQVYMINLRTDEITRVTYEGRYNV-SPVWSPDGNYIAYTS 368 Query: 366 FSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 KF I +++KDG + L + + P WS G L+F+ + G+ KLY +D Sbjct: 369 LEENKFNIYIVEKDGYNPQRLTYNSGHNETPRWSRDGNYLLFTSNRTGEF--KLYVMDRT 426 Query: 425 GRNETLI-NTPAYASDPQWV 443 G + + + PA + P WV Sbjct: 427 GTFQKRLKDGPANNNMPDWV 446 >gi|262193458|ref|YP_003264667.1| hypothetical protein Hoch_0133 [Haliangium ochraceum DSM 14365] gi|262076805|gb|ACY12774.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365] Length = 445 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 106/426 (24%), Positives = 196/426 (46%), Gaps = 19/426 (4%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS-EVVSKDLQRSDVFNLIS 83 G ++ + V + + IA + V+ D + + +V+ DL S F ++ Sbjct: 28 GPARSSAQQSGVVIELENPKRGLYPIAIPRSVAADAAQAEEAQKVMDFDLAVSGWFEVLD 87 Query: 84 QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ-IIGK 142 SF + + Q W +GA ++ R+ + G ++ E RL++V+ ++ K Sbjct: 88 PRSFLADLRTEGLGIQPQKWKDVGAFGVIKHRISRSG-NQYTFEGRLYEVEKGSAAVLIK 146 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + R + H +D+ + TGE+G F S++ FV+ G + MD DG Sbjct: 147 TYRGG--DLRALVHNFCNDVVEHYTGERGFFGSKMAFVT----RGSGGKQVMAMDFDGHG 200 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 +R LT + + P +SP+ KVA+ +Y + +Y++ R P RI M Sbjct: 201 VRSLTRNSSLNIL-PSWSPDGSKVAFTSY-MRNNPDLYVVGAGGGR-PNRISKQSGMNTG 257 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESD 321 +S +G + +++ KD +IY + S A +RLTN I+ S ++SPD +I F SD Sbjct: 258 ASWSPDGSKIAVTLSKDGNPEIYIISASSGAILQRLTNDRAIDTSPAWSPDGREIAFVSD 317 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP--QGDLIAFTKFSGEKFAIGVMKKD 379 R G Q++VM + G +R+S++ + PVWSP ++A+T G F I + Sbjct: 318 RHGGPQIFVMSAAGGSPRRVSRNGSYN-TTPVWSPRKDKRMLAYTTRDGGTFDIVTLDLG 376 Query: 380 GSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 + + + + P++SP+GR++ F+ ++ G+ +Y + +G A+ Sbjct: 377 TGDMVRITQGQGSNEEPSFSPNGRAIAFASER--REGAGIYIANADGSGTQRRVYSGVAT 434 Query: 439 DPQWVG 444 W Sbjct: 435 SIDWGP 440 >gi|226942085|ref|YP_002797159.1| TolB [Laribacter hongkongensis HLHK9] gi|226717012|gb|ACO76150.1| TolB [Laribacter hongkongensis HLHK9] Length = 308 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 9/313 (2%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV ++Q+ G F P R++AH I+D IY++ITG+KG F +RI++V++ G Sbjct: 2 DVNQKRQLTGGSFAIEPKQGRQLAHLIADMIYEAITGQKGIFGTRIVYVAQQ---GRNSY 58 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D DGA + L S++ L P +SP+ +VAY +++ + + VY+ + A + Sbjct: 59 ELRVADADGAGEQTLLRSKEP-LMSPVWSPDGSRVAYVSFETKKPV-VYVHNVATG-ARR 115 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + NF+ AP +S +G R +++ IY V RLT + I+ +++P Sbjct: 116 AVANFKGSNSAPAWSPDGTRLAVALTLSGNTQIYLVGADGGTPRRLTQSQGIDTEPAFTP 175 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D S+I+F SDR G Q+Y M ++G R++ + + P SP G AF + G ++ Sbjct: 176 DGSRILFTSDRAGGPQIYSMPASGGPATRLTYEGNYNV-SPAVSPDGKSFAFVRREGGRY 234 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + V + SQ + + ++P+++P+G+ ++F+ ++ G LY++ +G +T + Sbjct: 235 RVMVQQFGSSQANYVSDTQFDESPSFAPNGKMILFASEQGGRG--VLYTVTADGLTKTRL 292 Query: 432 NTPAYASDPQWVG 444 +P W Sbjct: 293 GASGDVMEPDWGP 305 >gi|153826263|ref|ZP_01978930.1| tolB protein [Vibrio cholerae MZO-2] gi|149740028|gb|EDM54203.1| tolB protein [Vibrio cholerae MZO-2] Length = 328 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 155/334 (46%), Gaps = 9/334 (2%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G++ + L + +L + + K + R+ AH I+D +Y+ +TGE+G F Sbjct: 3 GQLTQGQSKALSQDGQLV-LSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAF 61 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +RI +V + L + D DG N R + S+ Q L P +SP+ Q +AY ++ + Sbjct: 62 LTRIAYVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYVSFQN 119 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +Y+M+ + +++ +F APRFS +GK + + K + +Y++DL + Sbjct: 120 GQA-EIYMMNIYSGK-REKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRR 177 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +T+ N + PD ++F SDR GK Q+Y + +G + KR++ + Sbjct: 178 LTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQ- 236 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 +P G + S F + + ++L + ++P+ +P+G +I+S + Sbjct: 237 ITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYN-- 294 Query: 414 TGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + L + ++GR + L T P W F+ Sbjct: 295 KANVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 328 >gi|319760470|ref|YP_004124408.1| protein TolB [Candidatus Blochmannia vafer str. BVAF] gi|318039184|gb|ADV33734.1| protein TolB [Candidatus Blochmannia vafer str. BVAF] Length = 460 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 101/454 (22%), Positives = 181/454 (39%), Gaps = 36/454 (7%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----------DELGGKVSEV 68 L+ I S + +K+ + IA F + + + + Sbjct: 5 FFLLSILLSTSFSAISDMKIEITHGVNTAYPIAVVPFSTTYMKHNNILNNNNNIENIGSI 64 Query: 69 VSKDLQRSDVFNLISQDSFKQKITN-PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 ++ DL+ S FN + + + D +P F W LG +V G + + D + Sbjct: 65 IAADLRNSGKFNTLPISFLPHQPSKLSDIVPMF--WKKLGINTIVLGSINIDCNDNYLIT 122 Query: 128 FRLWDVKDRKQ--IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 ++L D I+ ++ R AHTIS++I++ +TG KG F +RI +VS + Sbjct: 123 YQLIDTSSNPALIILENQYLIKKKYTRCAAHTISNEIFEKLTGIKGAFCTRIAYVSY-IH 181 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + L V D DG N + S + L P ++P+ +K+AY + V + T Sbjct: 182 NTKYPYELYVADYDGYNQISICRSAEP-LMSPAWTPDGKKIAYVAFSSGHSELV--VQTL 238 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 I F + AP FS +G++ S K ++++Y + L S ++T+ N Sbjct: 239 GTGLINHIIKFPNHNGAPAFSPDGEKLAFSSSKTGSLNLYVMYLSSGKICQITSNRHNNT 298 Query: 306 SASYSPDSSQIVFESDREGKEQLYV-MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+ PD++ + + SD+ G Q+Y +N D +RIS S P S G+ I Sbjct: 299 EPSWFPDNTNLAYTSDQGGIPQIYKININNIIDNQRISWL-PGSNQKPNISSDGNFIIMV 357 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR-------------KK 410 + I + +E +L + P+ +P+ +I+S Sbjct: 358 NRYKGQQNISKLDLLTEKEEILTKRSFLADTPSIAPNEIMIIYSSILKKSTSVSIIHDND 417 Query: 411 DGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWV 443 + + S L I ++G + L P W Sbjct: 418 ENNEKSVLELISVDGHFKANLKGASGSLRFPVWS 451 >gi|42521812|ref|NP_967192.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus HD100] gi|67461965|sp|Q6MRB2|TOLB_BDEBA RecName: Full=Protein tolB; Flags: Precursor gi|39574342|emb|CAE77846.1| Adventurous gliding motility protein W [Bdellovibrio bacteriovorus HD100] Length = 461 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 204/465 (43%), Gaps = 43/465 (9%) Query: 18 CLLLVLIGGFFPTSIHAF----VKVATNSANYSPVSIAFTKFVSIDE---------LGGK 64 L L LI G FP HA + + A +AF +G + Sbjct: 5 ILALALIIGLFPLFSHAQNNNGIYIKLGEARTKKSLMAFPPLQYTGSPSTASRNQGVGVE 64 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP--------RFQDWNSLGAQVLVTGRV 116 + ++ DL S F I+Q +F + + +P +FQ W+S+GA L+ Sbjct: 65 IFNTITNDLTVSSYFQFINQSAFLEDTSKTGLMPAPGLPNGFKFQSWSSIGADFLIRAGY 124 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 G + + +E + V ++GKK+ +S R+IAHT ++D+ +++TG +G F SR Sbjct: 125 SVVG-NEVTLETYTYHVPRAALVLGKKYKGPTSSARRIAHTFANDVMKALTGVEGPFLSR 183 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY----D 232 ++ S+ + MD DGAN+ ++ R I P +SP+ +K+AY +Y Sbjct: 184 VVVSSDKGSG--QSKEIFTMDWDGANMEQVSNHRS-ISISPAWSPDGKKIAYTSYVKRVG 240 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + L+ I + + FS++GK +++ + + DIY + L Sbjct: 241 AKFRNADMLLLDLTTGKRSLISYRQGINSGASFSADGKHIYLTISQGNSPDIYKMGLDGT 300 Query: 293 ATERLTNTL--FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 ++TN +N+ + SP + F SDR G+ +Y + G++ KRI+ + Sbjct: 301 LVGKITNGPAGALNVEPTVSPQG-LLSFSSDRAGRPMIYTADAAGNNVKRITFAGVFN-S 358 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-------SNLQAPTWSPSGRS 403 P WSP G IAF S F I VM DG+ L ++ + P++SP GR Sbjct: 359 SPSWSPDGKKIAFAGQSDNNFDIFVMNADGTGMIRLTSAKKPNGRMASNEDPSFSPDGRF 418 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQWVGFMD 447 ++++ + G ++Y ++G E + P+W +D Sbjct: 419 VMYTSNRTGKN--QIYISTVDGTEERRVTNDNNNYYKPKWSNNID 461 >gi|78186497|ref|YP_374540.1| TolB protein, putative [Chlorobium luteolum DSM 273] gi|78166399|gb|ABB23497.1| TolB protein, putative [Chlorobium luteolum DSM 273] Length = 449 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 197/444 (44%), Gaps = 26/444 (5%) Query: 12 NMKINLCLLLVLIGGF-FPTSIHAFV--KVATNSANYSPVSIAFTKFVSIDELG----GK 64 ++++ LLL I F FP S A +A +++ K ++ + Sbjct: 17 SIRLTAALLLAFIACFSFPLSAMALEGEYIAIRKEGAGRIALVLGKPLAEGGKASAWSAE 76 Query: 65 VSEVVSKDLQRSDVFNLISQD-SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 + + + L + +FN+I + + + F NS+GA++ G + E R Sbjct: 77 LDREIREGLAFTGIFNMIPPPLNLFETGGSGKRTLNFGALNSIGAEIFAGGSLASEA-GR 135 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +++ +++ K I+ K + P R IAH D+ + +TG + F S I+FVS Sbjct: 136 VKLSMAVYETFGAKPILSKTYSGRPDELRTIAHAFCADLVKLLTGRRSVFGSNIVFVSNR 195 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLM 242 + DG ++ LT SR I P SP+ ++A+ Y L++ M Sbjct: 196 ----SGFKEIYSCAFDGGSLSQLTRSRS-ISLTPALSPDGTRLAFTDYTSGRPGLKIMNM 250 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 R A ++ + + P + SNG ++ + DIY V + ++T++ Sbjct: 251 ADRRISAVRQ----SGVSIDPGWRSNG-EVATTLSFEGDQDIYLVRPDGTLSRKVTSSRG 305 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I++S S+SPD +++ F S R G Q++++ +R++ + + P WSP GD IA Sbjct: 306 IDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLTYNGNYN-TQPSWSPGGDKIA 364 Query: 363 FTKFS-GEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +T + I ++ DGS L + ++P+WSP G ++F+ + G KLY Sbjct: 365 YTTMEKNGEINIFTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQK--KLYV 422 Query: 421 IDLNGRNE-TLINTPAYASDPQWV 443 ++ NG N+ L+ P W Sbjct: 423 MNANGDNQRRLLQMEGEQMQPSWS 446 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 44/219 (20%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + +IYS + +LT + I+++ + SPD +++ F G+ L Sbjct: 186 GSNIVFVSNRSGFKEIYSCAFDGGSLSQLTRSRSISLTPALSPDGTRLAFTDYTSGRPGL 245 Query: 329 YVMQS---------------------NGSDQKRISQDKE--------------------A 347 +M NG +S + + Sbjct: 246 KIMNMADRRISAVRQSGVSIDPGWRSNGEVATTLSFEGDQDIYLVRPDGTLSRKVTSSRG 305 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIF 406 P +SP G +AF + ++ Q R L + N P+WSP G + + Sbjct: 306 IDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAY 365 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASD-PQWVG 444 + + + +++I +G T + + A ++ P W Sbjct: 366 TTMEK-NGEINIFTIRPDGSGATRLTSGARENESPSWSP 403 >gi|194337187|ref|YP_002018981.1| WD40 domain protein beta Propeller [Pelodictyon phaeoclathratiforme BU-1] gi|194309664|gb|ACF44364.1| WD40 domain protein beta Propeller [Pelodictyon phaeoclathratiforme BU-1] Length = 440 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 186/451 (41%), Gaps = 22/451 (4%) Query: 2 SLRFFIAEELNMKINLCLLLVL-IGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE 60 +RFF + + L LLV + + +A + + K + + Sbjct: 1 MVRFFKHVFSGIFVALFFLLVFPLHLCAGETGETGEYIAIRKEGSGNIVLVLDKLHADGK 60 Query: 61 ----LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIP-RFQDWNSLGAQVLVTGR 115 G + V+ L + +F+++ ++ S+ F S+GA+V G Sbjct: 61 KESRFGQGLDTVMHDGLDFAGIFSMLPPPLNIMDNSDKKSVVINFGALTSVGAEVYAGGT 120 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 V + + ++ +++ + ++ K + R I H D+ +TG+ F S Sbjct: 121 VTIKS-GMINLDMSVYETAGSRLLLRKTYTGKEDELRSIGHAFCADLVALLTGKSSVFGS 179 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +I+FVS + + D DG + LT SR I P SP+ + +AY + Sbjct: 180 KIVFVSNNTG----YKEIYQCDFDGYGVEQLTNSRS-ITMNPSLSPDGRHLAYIDFSSGR 234 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 V + +R +GN + + P + S G ++ D IY V + Sbjct: 235 --SVLRIQNLGERKTASVGNS-GVSIDPAWRS-GSEVAATLSFDGNQQIYLVKTDGTLSR 290 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLTN+ I+IS ++SPD S++ F S R G Q+++ KR++ + P WS Sbjct: 291 RLTNSRSIDISPAFSPDGSKMAFVSSRNGLPQIFIQDIQSGQVKRLTFSGRYN-TQPSWS 349 Query: 356 PQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD 413 P GD IA+T + + I + DGS L P+WSP G+ ++FS + G Sbjct: 350 PAGDKIAYTTWEKNGEINIFTVSADGSGLMQLTRRCGENICPSWSPDGQMIVFSSNRSGK 409 Query: 414 TGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 KLY++D G + L+ + P W Sbjct: 410 Q--KLYTMDSKGDKQRALLQVDGQQTQPSWS 438 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 7/178 (3%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + +IY D E+LTN+ I ++ S SPD + + G+ L Sbjct: 178 GSKIVFVSNNTGYKEIYQCDFDGYGVEQLTNSRSITMNPSLSPDGRHLAYIDFSSGRSVL 237 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + ++K S DP W G +A T I ++K DG+ R L Sbjct: 238 RIQNL--GERKTASVGNSGVSIDPAWRS-GSEVAATLSFDGNQQIYLVKTDGTLSRRLTN 294 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ +P +SP G + F ++G +++ D+ +G+ + L + Y + P W Sbjct: 295 SRSIDISPAFSPDGSKMAFVSSRNG--LPQIFIQDIQSGQVKRLTFSGRYNTQPSWSP 350 >gi|118574590|sp|Q3B584|TOLB_PELLD RecName: Full=Protein tolB; Flags: Precursor Length = 436 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 197/444 (44%), Gaps = 26/444 (5%) Query: 12 NMKINLCLLLVLIGGF-FPTSIHAFV--KVATNSANYSPVSIAFTKFVSIDELG----GK 64 ++++ LLL I F FP S A +A +++ K ++ + Sbjct: 4 SIRLTAALLLAFIACFSFPLSAMALEGEYIAIRKEGAGRIALVLGKPLAEGGKASAWSAE 63 Query: 65 VSEVVSKDLQRSDVFNLISQD-SFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 + + + L + +FN+I + + + F NS+GA++ G + E R Sbjct: 64 LDREIREGLAFTGIFNMIPPPLNLFETGGSGKRTLNFGALNSIGAEIFAGGSLASEA-GR 122 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +++ +++ K I+ K + P R IAH D+ + +TG + F S I+FVS Sbjct: 123 VKLSMAVYETFGAKPILSKTYSGRPDELRTIAHAFCADLVKLLTGRRSVFGSNIVFVSNR 182 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLM 242 + DG ++ LT SR I P SP+ ++A+ Y L++ M Sbjct: 183 ----SGFKEIYSCAFDGGSLSQLTRSRS-ISLTPALSPDGTRLAFTDYTSGRPGLKIMNM 237 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 R A ++ + + P + SNG ++ + DIY V + ++T++ Sbjct: 238 ADRRISAVRQ----SGVSIDPGWRSNG-EVATTLSFEGDQDIYLVRPDGTLSRKVTSSRG 292 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I++S S+SPD +++ F S R G Q++++ +R++ + + P WSP GD IA Sbjct: 293 IDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLTYNGNYN-TQPSWSPGGDKIA 351 Query: 363 FTKFS-GEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +T + I ++ DGS L + ++P+WSP G ++F+ + G KLY Sbjct: 352 YTTMEKNGEINIFTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQK--KLYV 409 Query: 421 IDLNGRNE-TLINTPAYASDPQWV 443 ++ NG N+ L+ P W Sbjct: 410 MNANGDNQRRLLQMEGEQMQPSWS 433 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 44/219 (20%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + +IYS + +LT + I+++ + SPD +++ F G+ L Sbjct: 173 GSNIVFVSNRSGFKEIYSCAFDGGSLSQLTRSRSISLTPALSPDGTRLAFTDYTSGRPGL 232 Query: 329 YVMQS---------------------NGSDQKRISQDKE--------------------A 347 +M NG +S + + Sbjct: 233 KIMNMADRRISAVRQSGVSIDPGWRSNGEVATTLSFEGDQDIYLVRPDGTLSRKVTSSRG 292 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIF 406 P +SP G +AF + ++ Q R L + N P+WSP G + + Sbjct: 293 IDLSPSFSPDGTKMAFVSARFGNPQVFILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAY 352 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASD-PQWVG 444 + + + +++I +G T + + A ++ P W Sbjct: 353 TTMEK-NGEINIFTIRPDGSGATRLTSGARENESPSWSP 390 >gi|51246264|ref|YP_066148.1| TolB protein [precursor] [Desulfotalea psychrophila LSv54] gi|67461948|sp|Q6AKI4|TOLB_DESPS RecName: Full=Protein tolB; Flags: Precursor gi|50877301|emb|CAG37141.1| related to TolB protein [Precursor] [Desulfotalea psychrophila LSv54] Length = 438 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 110/433 (25%), Positives = 202/433 (46%), Gaps = 27/433 (6%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG------GKVSEVVSKD 72 ++ VL G V + + + +A F + E G +++ V+K Sbjct: 22 MISVLGNGIGQAMAADRVYLDITAPETRKIKVAVPWFTNTGEGGMKARIAKDIADTVAKA 81 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ + ++I +K + T DW LGA V G K ++++E RL D Sbjct: 82 LKFHGIISIIPTSEYKGRQT--------ADWAKLGADYAVLGSYKMFPK-KIKLEIRLLD 132 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + I+GK + S + + D +S+TG +G +SRI FVS Sbjct: 133 VAENNIILGKSYKGSMSQQNPMIFKFCDAAIKSLTGTEGIASSRIAFVSYE----KRTKD 188 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D G IR +T + ++ PRF+ + ++Y++Y ++Y+ D R + K Sbjct: 189 VFMTDILGRRIRQVTRHNN-LVVSPRFTRDGNFLSYSSYHSGS-QKLYITDLRQAKITKS 246 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + M LAP ++ +GK ++++ K A D++ ++ Q E+LT+ +N+S +YS D Sbjct: 247 LSRRKGMNLAPTWAPDGKSCILTLSKYGAPDLFRINQQGKILEQLTSRAGVNVSPTYSAD 306 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 IVF SDR G+ QLY+M+ KR++ D + +P WSP + IA++ + Sbjct: 307 GRHIVFVSDRSGRPQLYLMELETKQTKRLTYDGRENA-EPNWSPVENKIAYSSLRDGLYQ 365 Query: 373 IGVMKK-DGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 I + + + L D + ++P WSP G ++F++ ++Y+I NG + Sbjct: 366 IFTLDPFSAAPPKQLTSDLTRHESPVWSPDGNQILFTQYDG--RRQQIYAIMKNGSYQRR 423 Query: 431 I-NTPAYASDPQW 442 + + P S +W Sbjct: 424 VFSFPGSQSSARW 436 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 4/177 (2%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + D++ D+ ++T + +S ++ D + + + S G ++LY Sbjct: 175 SRIAFVSYEKRTKDVFMTDILGRRIRQVTRHNNLVVSPRFTRDGNFLSYSSYHSGSQKLY 234 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + + ++ P W+P G T + + + G L Sbjct: 235 ITDLRQAKITKSLSRRKGMNLAPTWAPDGKSCILTLSKYGAPDLFRINQQGKILEQLTSR 294 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 + + +PT+S GR ++F + G +LY ++L + + L ++P W Sbjct: 295 AGVNVSPTYSADGRHIVFVSDRSGR--PQLYLMELETKQTKRLTYDGRENAEPNWSP 349 >gi|194333584|ref|YP_002015444.1| WD40 domain-containing protein beta Propeller [Prosthecochloris aestuarii DSM 271] gi|194311402|gb|ACF45797.1| WD40 domain protein beta Propeller [Prosthecochloris aestuarii DSM 271] Length = 441 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 103/451 (22%), Positives = 193/451 (42%), Gaps = 21/451 (4%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI-- 58 M++ FFI + + I C + + ++K+A P+ + + Sbjct: 1 MNVTFFIRLQ-TLVILFCFFFMNAVTICAEPVGQYIKIAKEGETKIPLVLKTLDYQKEKD 59 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQD----SFKQKITNPDSIPRFQDWNSLGAQVLVTG 114 + + ++ L + +F+L++ S + + F +S+GA++ G Sbjct: 60 GKYARDLDGIMESGLDFTGMFSLLNAPLNVFSGGDRYVVGERQVNFPALSSVGAELYA-G 118 Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 V++ + + ++DV K ++ K + R I H D+ + ITG+ F+ Sbjct: 119 GVMERRGSTINMAMEVYDVLTGKLMLKKLYSGKRDDLRSIGHRFCADLMELITGKPSVFD 178 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SR+ FVS + K + + + DG + +T S + P SP+ +AY TY Sbjct: 179 SRLAFVSLNGG----KKEIFLSEFDGYGAKQVT-STGGMALTPSLSPDSGLLAYLTYS-G 232 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + + + D + + + + + P + + + + +IY VD + Sbjct: 233 GLPDLQIKDLATQKTVSVM--KKGVKIDPSWRNGTLECATTFSFEGDQEIYMVDRNGSVG 290 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 RLT + I++S S+SPD ++ F S R G Q+++ + + R++ + + P W Sbjct: 291 RRLTRSRGIDVSPSFSPDGRKMAFVSSRHGSPQVFIKDLSSGRESRLTFSGKYN-TQPAW 349 Query: 355 SPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 SP D IAFT + I + DGS R L +AP WSP G ++FS +DG Sbjct: 350 SPVDDKIAFTSMQKNGEINIFTINADGSGLRQLTYRARQNEAPGWSPDGSMIVFSSTRDG 409 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 KL+ ++ NGRN+ + P P W Sbjct: 410 SR--KLFMMNANGRNQRSLKLPGEQMQPSWS 438 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 8/178 (4%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R +I+ + +++T+T + ++ S SPDS + + + G L Sbjct: 179 SRLAFVSLNGGKKEIFLSEFDGYGAKQVTSTGGMALTPSLSPDSGLLAYLTYSGGLPDLQ 238 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLVE 388 + QK +S K+ DP W G L T FS I ++ ++GS R L Sbjct: 239 IKDLAT--QKTVSVMKKGVKIDPSW-RNGTLECATTFSFEGDQEIYMVDRNGSVGRRLTR 295 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 + +P++SP GR + F + G +++ DL+ GR L + Y + P W Sbjct: 296 SRGIDVSPSFSPDGRKMAFVSSRHGS--PQVFIKDLSSGRESRLTFSGKYNTQPAWSP 351 >gi|94967623|ref|YP_589671.1| TolB-like protein [Candidatus Koribacter versatilis Ellin345] gi|94549673|gb|ABF39597.1| TolB-like protein [Candidatus Koribacter versatilis Ellin345] Length = 438 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 189/449 (42%), Gaps = 31/449 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVV 69 M L L +L+ P + + V +A F + L + + Sbjct: 1 MLRKLFLPALLLIASLPLTAQTDWIKTGTNLGVEKVRLAVPDFKAGQGSESLSAAFDQTL 60 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL--GAQVLVTGRVIKEGKDRLRVE 127 DL ++ +F+L+S+ + S W + A +L G + + + V+ Sbjct: 61 WNDLYQAGLFDLVSKSFNPTQAPGQPSEVELNTWGAPPPNASMLAFGNIN-VANNEVTVQ 119 Query: 128 FRLWDVKDRK--QIIGKKFFSSP--ASWRKIAHTISDDIYQSITG-EKGDFNSRILFVSE 182 L+DVK+ + Q++GK++ + + R IAH +D+I + G +G S+I F+S Sbjct: 120 GWLYDVKNPQTPQVLGKQYKNGATVENTRLIAHKFADEIIFRLGGGIQGIAESKIYFIST 179 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + MD DG+N + +T I+ PR SP+ +VAY+ + + +Y Sbjct: 180 RTG----HKEIWAMDYDGSNQKPITHLGS-IVLSPRASPDGARVAYSWMTNGWEIGIYST 234 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + R+G AP FS +G R S + +IY+ D+ +RLTN Sbjct: 235 ELGRSVNFARLG---GTNSAPAFSGDGNRLAFSSSRSGDPEIYTSDISGANLKRLTNVKG 291 Query: 303 INISASYSPD-SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + S +++P ++QI F S R G Q+Y M +GS+ +++ A P WSP G + Sbjct: 292 PDTSPTWNPKTNAQIAFVSGRTGLPQIYTMDVDGSNVIKMTDQGYA--ISPSWSPNGQFL 349 Query: 362 AFTKFS------GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 F I +M Q L D P+W+P GR ++F + G Sbjct: 350 VFAWTRHYGPGAPGAQDIYIMDVASHQWVQLTHDGGRNDFPSWAPDGRHVVFQSSRSGR- 408 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQWV 443 +++S+ +G +T + S P W Sbjct: 409 -EEIWSMLADGSQQTQLTNSGANSMPNWS 436 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + + +I+++D + + +T+ I +S SPD +++ + S ++ Sbjct: 172 SKIYFISTRTGHKEIWAMDYDGSNQKPITHLGSIVLSPRASPDGARVAY-SWMTNGWEIG 230 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE- 388 + + ++ + P +S G+ +AF+ I G+ + L Sbjct: 231 IYSTELGRSVNFARLGGTN-SAPAFSGDGNRLAFSSSRSGDPEIYTSDISGANLKRLTNV 289 Query: 389 DSNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +PTW+P + + F + G ++Y++D++G N + YA P W Sbjct: 290 KGPDTSPTWNPKTNAQIAFVSGRTG--LPQIYTMDVDGSNVIKMTDQGYAISPSWSP 344 >gi|119356690|ref|YP_911334.1| WD40 domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354039|gb|ABL64910.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides DSM 266] Length = 442 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 101/455 (22%), Positives = 196/455 (43%), Gaps = 24/455 (5%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHA-----FVKVATNSANYSPVSI--AFT 53 M +R + ++ LL++ FP+ + A ++ + + P+++ F Sbjct: 1 MIIREEFSRKMPAVFIKALLILWCFVSFPSFLFASETGEYIAIRKSGGGKIPLTLDKTFA 60 Query: 54 KFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVT 113 K V + L S +F++I + + F S+G+++ Sbjct: 61 KGNKESGWAETFDSAVREGLDYSGLFSMIPPPINVRADGGKGGV-NFSVLGSVGSEIYAG 119 Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 GR+ KE + ++ +++ K I+ K + S RK + S D+ + +TG+K F Sbjct: 120 GRLTKES-GSVTLDMEVYETLGGKLIMKKSYVGSEGDLRKQGNVFSADLIELLTGKKSLF 178 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 S+I+FVS + D +G NI LT ++ I P +SP+ + +A+ Y Sbjct: 179 GSKIVFVSNKTG----FKEIYQCDFNGQNIEQLTSTKS-ISLTPGYSPDGRYLAFTDYTT 233 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 L + + + + P + NG+ ++ + ++Y + Sbjct: 234 GRPA---LHIRSLSDRKDTVLEKNGVSIDPGWR-NGRELATTLSYEGDQELYLCKVDGTV 289 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 + RLT + I++S ++SPD S++ F S R G Q+++M + +R++ + P Sbjct: 290 SRRLTTSKGIDLSPTFSPDGSRMAFVSSRNGLPQIFIMDVSSGLTRRLTYSGRYN-TQPS 348 Query: 354 WSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKD 411 WSP GD IA++ + + I + DG+ + L S +AP+WSP G ++F+ + Sbjct: 349 WSPGGDKIAYSTWEKSGEINIFTINADGTGLKKLTSGSRENEAPSWSPDGSMIVFASNRQ 408 Query: 412 GDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGF 445 G KL+ + G N+ L+ P W F Sbjct: 409 G--NKKLFVMGSGGENQKRLLQMDGEQMQPSWSLF 441 >gi|115378912|ref|ZP_01466048.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|115364091|gb|EAU63190.1| protein TolB [Stigmatella aurantiaca DW4/3-1] Length = 366 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 106/378 (28%), Positives = 175/378 (46%), Gaps = 20/378 (5%) Query: 73 LQRSDVFNLISQDSFKQKITN--PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 L+ S +F ++ + SF F W+ +GA+ LV ++ EG LR E RL Sbjct: 3 LRASGLFQVLDRASFTADAKEGITAGSINFTRWSDVGAESLVKVQLGAEG-GTLRGELRL 61 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++V ++ + R++AH ++D +Y+ +T E F SRI+FV ++ + Sbjct: 62 FNVGSGREDFKASHAVPTSEPRQLAHFLADALYRHLTREPSPFLSRIVFVRKARDN---- 117 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + D DG N R LT I P P+ VA+ +Y L + Sbjct: 118 RDVWTADWDGNNARALTTG--GINLLPALGPDG-TVAFTSYRRGQP---DLYLQKEGGEA 171 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FINISASY 309 + I M FS +GKR + + E+ IY ++ + +R+T+T IN S S+ Sbjct: 172 RPIVQNGQMATGVAFSPDGKRIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSPSW 231 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++ F S+R G Q+YVM +G++ +R++ + P WSP+GDLIAFT Sbjct: 232 SPDGKRLAFVSNRGGSPQIYVMNVDGTNARRLTFQGNYNQT-PDWSPRGDLIAFTARDER 290 Query: 370 K-FAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F + + D + L +D SN + P +SP+GR ++FS + G +L+ + G N Sbjct: 291 NAFDLFTVNVDTGKITRLTQDQSNNEEPVFSPNGRLILFSSTRTGT--PQLFVMTAEGNN 348 Query: 428 ETLINTP-AYASDPQWVG 444 + P W Sbjct: 349 PLALPMGKGGGLTPDWAP 366 >gi|145219969|ref|YP_001130678.1| WD40 domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145206133|gb|ABP37176.1| WD-40 repeat-containing protein [Chlorobium phaeovibrioides DSM 265] Length = 442 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 100/439 (22%), Positives = 179/439 (40%), Gaps = 23/439 (5%) Query: 15 INLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIA--FTKFVSIDELG--GKVSEV 68 I + LV+ P + A +A +++ E G ++ Sbjct: 13 IFSGVFLVMALLLLPGQVQANGDDYIAIRKEGSGKIALVLSIPAASGGKESGWAERLDVE 72 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSI-PRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 L + +F+LI S F NS+GA+ G V+++ + + Sbjct: 73 SRSGLDFTGLFSLIPPPLNVAGPRGSSSQSINFGALNSVGAEFYAGGAVVQKS-GNVVLS 131 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++D + I+ K + + R IAH D+ + +TG F S+++FVS Sbjct: 132 MEVYDTLGGRPILRKTYTGKESDLRSIAHAFCADLVELLTGRPSVFGSKVVFVSNR---- 187 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + D DG +R +T +R + P SP+ Q +AY Y L + Sbjct: 188 SGFKEIYMCDYDGHGMRQMTNTRS-LALTPVLSPDGQHLAYTDYASGRPR---LSILDLA 243 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 +R + P + SN ++ +IY V + R+TN+ I++S Sbjct: 244 GGKRRSVARSGNSIDPGWRSN-AEVATTLSFQGDQEIYLVRPDGSLARRVTNSRGIDLSP 302 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD +++ F S R Q++++ KR++ + + P WSPQGD IA++ Sbjct: 303 SFSPDGNKMAFVSSRTSAPQIFILDLQTGQTKRLTYNGSYN-TQPSWSPQGDKIAYSTME 361 Query: 368 -GEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + I + DGS R L S ++P+WSP G ++F+ + G KL+ ++ G Sbjct: 362 KNGEINIFTINTDGSSLRQLTSGSRQNESPSWSPGGDMIVFTSSRQGQK--KLFVMNAAG 419 Query: 426 RNE-TLINTPAYASDPQWV 443 + L+ P W Sbjct: 420 GGQRRLLQLEGEQMQPSWS 438 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 80/178 (44%), Gaps = 7/178 (3%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + + +IY D + ++TNT + ++ SPD + + G+ +L Sbjct: 178 GSKVVFVSNRSGFKEIYMCDYDGHGMRQMTNTRSLALTPVLSPDGQHLAYTDYASGRPRL 237 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 ++ G ++ ++ + + DP W ++ F G++ I +++ DGS R + Sbjct: 238 SILDLAGGKRRSVA--RSGNSIDPGWRSNAEVATTLSFQGDQ-EIYLVRPDGSLARRVTN 294 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + +P++SP G + F + + +++ +DL G+ + L +Y + P W Sbjct: 295 SRGIDLSPSFSPDGNKMAFVSSR--TSAPQIFILDLQTGQTKRLTYNGSYNTQPSWSP 350 >gi|85713384|ref|ZP_01044391.1| Periplasmic component of the Tol biopolymer transport system [Idiomarina baltica OS145] gi|85692790|gb|EAQ30781.1| Periplasmic component of the Tol biopolymer transport system [Idiomarina baltica OS145] Length = 298 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 151/299 (50%), Gaps = 8/299 (2%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +R+ +H ISD +Y+++TGEKG F +RI +V+ + L V D DGAN + L Sbjct: 7 NQFRQYSHRISDVVYEALTGEKGAFMTRIAYVTVN-QDDQYPYKLLVADYDGANEKVLLR 65 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S + L P +SP+ K+AY +++++ +++ D R +++ +F + +P FS Sbjct: 66 SPEP-LMSPSWSPDGNKLAYVSFENKRP-EIFVQDIYTTR-REKVTSFPGINGSPVFSPK 122 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + + KD ++Y +DL++ +RLT I+ S++PD IVF S+R G+ QL Sbjct: 123 GDKMAMVLSKDGNPELYVMDLKTKNLQRLTRNRTIDTEPSWTPDGRSIVFTSERGGRPQL 182 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + + D +R++ + E + V P GD + + + I + ++L Sbjct: 183 YSVNLSSGDVRRLTFEGEQNLGGTVM-PSGDSMILVNRTNGNYHIARQEFPRGTMQVLTR 241 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + ++P+ +P+G +I+S + L + +GR + L + P W FM Sbjct: 242 TALDESPSVAPNGSMVIYSTTHNNKQVLAL--VSTDGRFKARLPASSGEVKSPSWSPFM 298 >gi|93005961|ref|YP_580398.1| TolB-like [Psychrobacter cryohalolentis K5] gi|92393639|gb|ABE74914.1| TolB-like [Psychrobacter cryohalolentis K5] Length = 430 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 108/422 (25%), Positives = 184/422 (43%), Gaps = 22/422 (5%) Query: 29 PTSIHAFVKVATN-SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSF 87 P+ + A V + + +AF F L S ++ DL ++++ + SQ+ Sbjct: 22 PSVLAAPVVLELDYEIPVQQNQVAFVPFAGDSVL----SPIIVNDLSKTEL-KVTSQNLP 76 Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +Q ++ + W S+G LV G + + ++ ++ + +VK + I GK+ ++ Sbjct: 77 QQPRSSSELAGTLPVWQSMGIPYLVVGS-TRSSRGKVVTDYEVIEVKTGRVIEGKQTLTA 135 Query: 148 P---ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S R H I+D +Y+ ITG GDF+ RI ++ E + L VMD DG N + Sbjct: 136 DNNKDSMRYAGHVIADKVYELITGIPGDFSGRIAYIEEIGTGKAKVSRLKVMDADGENAK 195 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 +T I F P +SP+ ++AY+ D+ +Y+ A + F L+P Sbjct: 196 TITEVSGSI-FSPAWSPDGNRIAYSVQRDKSYPVIYVQSVSGGGAT-PLTPFPGSNLSPS 253 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + L S + + DIY + RLTN + SY+PD VF SD+ G Sbjct: 254 FSPDGSKILFSSSFEGSADIYEMSASGGQPRRLTNWPSSEVQPSYAPDGRSFVFVSDKTG 313 Query: 325 --KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 K Q+Y + ++S A+ P +S G IAF VM G+ Sbjct: 314 FNKPQIYRYEFGSGRTTKVSNSGYAT--SPQFSSDGTQIAFLNGRSA----AVMNSGGAV 367 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L +AP++SP+G+ ++++ K+ G + LNG + P W Sbjct: 368 TANLGNTGIDEAPSFSPNGKRVVYASKQGGKGVLTI--KSLNGGEAFGKSGQGTIRSPVW 425 Query: 443 VG 444 Sbjct: 426 SA 427 >gi|218516474|ref|ZP_03513314.1| translocation protein TolB [Rhizobium etli 8C-3] Length = 229 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 114/231 (49%), Positives = 162/231 (70%), Gaps = 3/231 (1%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PRFSPN+Q+V Y ++ ++ RVY++ + + +GNF M +PRFS +G++ ++S+ Sbjct: 2 PRFSPNRQEVTYMSFANQQP-RVYMLQLETGQ-REVVGNFPGMTFSPRFSPDGQKVIMSL 59 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 Q++ +IY++DL+S T RLT+T I+ S SYSPD +++ FESDR GK Q+YVM ++GS Sbjct: 60 QQEGNSNIYTMDLRSRKTTRLTSTAAIDTSPSYSPDGARVSFESDRGGKPQIYVMNADGS 119 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 Q RIS + SY PVWSP+GDLIAFTK +G KF+IGVMK DGS ER+L + + PT Sbjct: 120 GQTRISF-GDGSYSTPVWSPRGDLIAFTKQAGGKFSIGVMKPDGSGERILTTGFHNEGPT 178 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 W+P+GR L+F R+ G G +LYSIDL G NE L+ TP+Y SDP W ++ Sbjct: 179 WAPNGRVLMFFRQAAGAGGPQLYSIDLTGYNEQLVKTPSYGSDPAWSPLLE 229 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 6/199 (3%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + + + F PRFSP+ QKV + E +Y MD R R R+ + ++ + Sbjct: 32 QREVVGNFPGMTFSPRFSPDGQKVI-MSLQQEGNSNIYTMDLR-SRKTTRLTSTAAIDTS 89 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +G R + IY ++ + R++ + +SP I F Sbjct: 90 PSYSPDGARVSFESDRGGKPQIYVMNADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQA 149 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDG 380 GK + VM+ +GS ++ ++ P W+P G ++ F + + + + G Sbjct: 150 GGKFSIGVMKPDGSGERILTTGFHNE--GPTWAPNGRVLMFFRQAAGAGGPQLYSIDLTG 207 Query: 381 SQERLLVEDSNLQAPTWSP 399 E+L+ S P WSP Sbjct: 208 YNEQLVKTPSYGSDPAWSP 226 >gi|145628741|ref|ZP_01784541.1| translocation protein TolB precursor [Haemophilus influenzae 22.1-21] gi|144979211|gb|EDJ88897.1| translocation protein TolB precursor [Haemophilus influenzae 22.1-21] Length = 317 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 145/320 (45%), Gaps = 14/320 (4%) Query: 3 LRFFIAEELNM-KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 + F ++ + K + +L +++ V++ + IA FV Sbjct: 1 MLNFKGNKMKLLKRLVSVLAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVVPFVG--SA 58 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 +S++V+ DL+ S FN I+ Q+ T+ + + W+++G +V G+V+ G Sbjct: 59 PEDISKIVADDLRNSGKFNPIAVSQMPQRPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGN 117 Query: 122 DRLRVEFRLWDVKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + ++L D ++ + + R AHT+SD++++ +T +G F +R Sbjct: 118 G-YSITYQLIDTVGASGTPGTVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTR 176 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ Sbjct: 177 IAYVVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKS 234 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 V + A K + +F+ AP FS +G R + +D ++IY + + Sbjct: 235 QLV--VQDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQ 292 Query: 297 LTNTLFINISASYSPDSSQI 316 LT+ N ++SPD + I Sbjct: 293 LTSGAGNNTEPAWSPDGNSI 312 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 13/179 (7%) Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY---S 286 +Y + Y T D +++ R R VQK+ Y Sbjct: 143 SYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFR--------TRIAYVVQKNGGSQPYEVRV 194 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D + + +S ++SPD ++ + S K QL V N +K ++ + Sbjct: 195 ADYDGYNQFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGARKVVASFQG 254 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSL 404 + P +SP G +AF I VM +G L N P WSP G S+ Sbjct: 255 HN-GAPAFSPDGSRLAFASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEPAWSPDGNSI 312 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 314 SQIVFESDREGKEQLY---VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 ++I + + G Q Y V +G +Q I P WSP G +A+ F +K Sbjct: 175 TRIAYVVQKNGGSQPYEVRVADYDGYNQF-IVNRSAQPIMSPAWSPDGQRLAYVSFENKK 233 Query: 371 FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + V + +++ + AP +SP G L F+ +DG +Y + NG T Sbjct: 234 SQLVVQDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDG--VLNIYVMGANGGTPT 291 Query: 430 -LINTPAYASDPQWVG 444 L + ++P W Sbjct: 292 QLTSGAGNNTEPAWSP 307 >gi|71065810|ref|YP_264537.1| TolB periplasmic receptor [Psychrobacter arcticus 273-4] gi|71038795|gb|AAZ19103.1| probable TolB periplasmic receptor [Psychrobacter arcticus 273-4] Length = 430 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 106/425 (24%), Positives = 182/425 (42%), Gaps = 24/425 (5%) Query: 27 FFPTSIHAFVKVATN-SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 P+ + A V + + +AF F L S ++ DL ++++ I+ Sbjct: 20 IAPSVLAAPVILELDYEIPVQQNQVAFVPFAGDSVL----SPIIVNDLSKTEL--KITSQ 73 Query: 86 SFKQKITNPDSIP-RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + Q+ + + W S+G LV G + + ++ ++ + +VK + I GK+ Sbjct: 74 NLPQQPRSSSELSGTLPVWQSMGIPYLVVGS-TRSSRGKVVTDYEVIEVKTGRVIEGKQT 132 Query: 145 FSSP---ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 ++ S R H I+D +Y+ ITG GDF+ RI ++ E + L +MD DG Sbjct: 133 LTTDNNKDSMRYAGHVIADKVYELITGIPGDFSGRIAYIEEIGAGKAKVSRLKIMDADGE 192 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + +T I F P +SP+ ++AYA D+ +Y+ A + F L Sbjct: 193 NAKTITEVSGSI-FSPAWSPDGNRIAYAVQRDKSYPVIYVQSVSGGGAT-PLTPFPGSNL 250 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P FS +G + L S + + DIY + RLTN + SY+PD VF SD Sbjct: 251 SPSFSPDGSKILFSSSFEGSADIYEMSASGGQPRRLTNWPSSEVQPSYAPDGRSFVFVSD 310 Query: 322 REG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 + G K Q+Y + ++S A+ P +S G IAF +M Sbjct: 311 KAGFNKPQIYRYEFGSGRTTKVSNSGYAT--SPQFSSDGSQIAFLNGRSA----AIMNSG 364 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G+ L +AP++SP+G+ ++++ K+ G + LNG + Sbjct: 365 GAVTANLGNTGIDEAPSFSPNGKRVVYASKQGGKGVLTI--KSLNGGEAFGKSGQGVIRS 422 Query: 440 PQWVG 444 P W Sbjct: 423 PVWSA 427 >gi|328675514|gb|AEB28189.1| tolB protein precursor [Francisella cf. novicida 3523] Length = 435 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 104/444 (23%), Positives = 182/444 (40%), Gaps = 24/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + +L+ + +V P+ + V +D+ +V+ V+ D Sbjct: 1 MRKIIAGVLIFVFLISSLYADLVAEVT-TGVIQKPLVTVVSDNV-VDQFPQQVNSVIVAD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + D+ K +I +IP W SL + +V + K + VE ++ Sbjct: 59 LNHNAKLQ--GNDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTKNSYNNYTVEVQILK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--I 189 D + + + S R +AH IS+ +Y +TGE+G F S++ +V S Sbjct: 113 RNDTSYLQAITYKNINISLMRTLAHKISNYVYHKLTGEQGFFLSKLAYVKVSNPYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 LYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ IVF SDREG+ +YV N Q I K ++P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIYQAYEPNYTPDGKNIVFMNQ 349 Query: 367 SGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + + +PT SP G + + S L + L+ Sbjct: 350 SSRTSGTQIADFNLANGSVTNITNGKSDSSPTVSPYGDMIAYISTNT-RGYSSLDMVSLD 408 Query: 425 GRNETLINTPAYA----SDPQWVG 444 G N I T P W Sbjct: 409 GDNHFNIETANNGNILIQSPSWSP 432 >gi|239906030|ref|YP_002952769.1| putative TolB protein precursor [Desulfovibrio magneticus RS-1] gi|239795894|dbj|BAH74883.1| putative TolB protein precursor [Desulfovibrio magneticus RS-1] Length = 441 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 94/449 (20%), Positives = 180/449 (40%), Gaps = 22/449 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAF--VKVATNSANYSPVSIAFT-KFVSIDEL-- 61 + + + + C L+ T A + V + +++ F ++ Sbjct: 3 MRKRMMVTGMWCALVAAFLCLGATRAQAQSSLAVDIQGPGQAKMNLVQARPFAGGGQMTP 62 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP-DSIPRFQDWNSLGAQVLVTGRVIKEG 120 K+ ++++KDLQ ++ Q S ++ F+ + VLVT G Sbjct: 63 AEKLQDLINKDLQFLPFLQIVPQSSVPGQVAGATADQIDFKPFGLAKIDVLVTANWTP-G 121 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + VE R ++V +K ++GK + + A IA ++ Q++TG+ G FNS+I F Sbjct: 122 GNLGNVELRAFEVYSQKVLVGKGYDAVTDAQLPDIADRFCMELMQALTGQGGFFNSQIAF 181 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILR 238 V S G + + G + +T + + P +S + +++ + Sbjct: 182 VKPSAGKGA---DIWTVRPTGRGLNRVTNYNELGMAVSPSWSFDGRRIVFTLIGSRG--- 235 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 YL P+ + +++P F +G + +S+ DIY ++ + L Sbjct: 236 HYLGVWSGGGKPQVYTLPSTNVVSPHFLPDG-QVAVSLTMHGKADIYLLNSAYQPGQPLV 294 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + I +S +++ + + SD G +YV +G +R++ + +P SP G Sbjct: 295 SGSGIEVSPTFAASGGAMAYVSDGTGSPNIYVTTVHGGAGRRVTTSGYNT--NPSMSPDG 352 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSK 417 LIAFTK G + VM QE + + P++SP G + FS + G K Sbjct: 353 KLIAFTKQLGGAQKVFVMDLATGQETQVTSGGGSDENPSFSPDGYFIAFSSTRSGQK--K 410 Query: 418 LYSIDLNGRNETLINTP-AYASDPQWVGF 445 ++ +G +I T A P W Sbjct: 411 IFVTTRHGAPPVMIPTGDGAAYMPSWGPL 439 >gi|289804344|ref|ZP_06534973.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 285 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 8/292 (2%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Q L Sbjct: 1 HTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLM 58 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G + + Sbjct: 59 SPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFA 116 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M NG Sbjct: 117 LSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNING 176 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +RI+ + + D S G + + + I ++L + P Sbjct: 177 GAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETP 235 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 236 SLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL 285 >gi|328676439|gb|AEB27309.1| tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins [Francisella cf. novicida Fx1] Length = 435 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 103/435 (23%), Positives = 182/435 (41%), Gaps = 22/435 (5%) Query: 22 VLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNL 81 VLI F ++++A + + + +D+ +V+ V+ DL + Sbjct: 8 VLIFVFLISNLYADLVAEVTTGVIQKPLVTIVSDNVVDQFPQQVNSVIVADLNHNAKLQ- 66 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 + D+ K +I ++P W SL + +V + K + VE ++ D + Sbjct: 67 -ANDTIKYEIKQKQNVP----WKSLKSDYVVLTKYTKNSYNNYTVEVQILKRNDTSYLQA 121 Query: 142 KKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDR 198 + + S R +AH IS+ +YQ +TG +G F +++ +V S L + D Sbjct: 122 ITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNPYARYGRLYELIISDY 181 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N + D + P +S + + + Y++Y + VY ++ + RI N++ Sbjct: 182 DGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK-VTRITNYKG 239 Query: 259 MILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + +P FS +GK +++ K + +IY ++L + A +R+T IN + +SP+ I Sbjct: 240 INSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN-GINTAPKFSPNGQSI 298 Query: 317 VFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AI 373 VF SDREG+ +YV N Q I K ++P ++P G I F S I Sbjct: 299 VFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKNIVFMNQSSRTSGTQI 358 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN----ET 429 + +PT SP G + + S L + L+G N ET Sbjct: 359 ADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSLDMVSLDGDNHFNIET 417 Query: 430 LINTPAYASDPQWVG 444 N P W Sbjct: 418 ADNGNILIQSPSWSP 432 >gi|208780417|ref|ZP_03247758.1| TolB amino- domain family protein [Francisella novicida FTG] gi|208743785|gb|EDZ90088.1| TolB amino- domain family protein [Francisella novicida FTG] Length = 439 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 183/450 (40%), Gaps = 26/450 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + I + V + + A V P+ + V +D+ +V+ Sbjct: 1 MRNGMRKIIAGVSIFVFLISNLYADLVAEVT---TGVIQKPLVTVVSDNV-VDQFPQQVN 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL + + D+ K +I +IP W SL + +V + K + V Sbjct: 57 SVIVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTKNAYNNYTV 110 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 E ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 111 EVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNP 170 Query: 186 SGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L + D DG N + D + P +S + + + Y++Y + VY ++ Sbjct: 171 YARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLE 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTL 301 + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 230 IATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDKTNIYIMNLATKALKRITIN- 287 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL 360 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P G Sbjct: 288 GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKN 347 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F S I + +PT SP G + + S L Sbjct: 348 IVFMNQSSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSL 406 Query: 419 YSIDLNGRN----ETLINTPAYASDPQWVG 444 + L+G N ET N P W Sbjct: 407 DMVSLDGDNHFNIETADNGNILIQSPSWSP 436 >gi|254373809|ref|ZP_04989292.1| TolB protein precursor [Francisella novicida GA99-3548] gi|151571530|gb|EDN37184.1| TolB protein precursor [Francisella novicida GA99-3548] Length = 439 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 183/450 (40%), Gaps = 26/450 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + I + V + + A V P+ + V +D+ +V+ Sbjct: 1 MRNGMRKIIAGVSIFVFLISNLYADLVAEVT---TGVIQKPLVTVVSDNV-VDQFPQQVN 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL + + D+ K +I +IP W SL + +V + K + V Sbjct: 57 SVIVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTKNAYNNYTV 110 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 E ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 111 EVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNP 170 Query: 186 SGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L + D DG N + D + P +S + + + Y++Y + VY ++ Sbjct: 171 YARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLE 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTL 301 + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 230 IATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN- 287 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL 360 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P G Sbjct: 288 GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKN 347 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F S I + +PT SP G + + S L Sbjct: 348 IVFMNQSSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSL 406 Query: 419 YSIDLNGRN----ETLINTPAYASDPQWVG 444 + L+G N ET N P W Sbjct: 407 DMVSLDGDNHFNIETADNGNILIQSPSWSP 436 >gi|57340054|gb|AAW50014.1| hypothetical protein FTT0840 [synthetic construct] Length = 474 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 102/453 (22%), Positives = 183/453 (40%), Gaps = 24/453 (5%) Query: 4 RFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG 63 + + M+ + + + + +V P+ + V +D+ Sbjct: 22 KHMLEMRNGMRKIIAGVFIFVFLISNLYADLVAEVT-TGVIQKPLVTVVSDNV-VDQFPQ 79 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 +V+ V+ DL + + D+ K +I +IP W SL + +V + + Sbjct: 80 QVNSVIVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNN 133 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 VE ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V Sbjct: 134 YTVEVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKV 193 Query: 183 SVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S L + D DG N + D + P +S + + + Y++Y + VY Sbjct: 194 SNPYARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVY 252 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLT 298 ++ + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 253 TLEIATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLSTKALKRIT 311 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQ 357 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P Sbjct: 312 IN-GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPD 370 Query: 358 GDLIAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 G I F S I + +PT SP G + + Sbjct: 371 GKNIVFMNQSSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGY 429 Query: 416 SKLYSIDLNGRN----ETLINTPAYASDPQWVG 444 S L + L+G N ET N P W Sbjct: 430 SSLDMVSLDGDNHFNIETADNGNILIQSPSWSP 462 >gi|254372335|ref|ZP_04987826.1| TolB protein precursor [Francisella tularensis subsp. novicida GA99-3549] gi|151570064|gb|EDN35718.1| TolB protein precursor [Francisella novicida GA99-3549] Length = 439 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 183/450 (40%), Gaps = 26/450 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + I + V + + A V P+ + V +D+ +V+ Sbjct: 1 MRNGMRKIIAGVSIFVFLISNLYADLVAEVT---TGVIQKPLVTVVSDNV-VDQFPQQVN 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL + + D+ K +I +IP W SL + +V + K + V Sbjct: 57 SVIVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTKNSYNNYTV 110 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 E ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 111 EVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNP 170 Query: 186 SGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L + D DG N + D + P +S + + + Y++Y + VY ++ Sbjct: 171 YARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLE 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTL 301 + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 230 IATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN- 287 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL 360 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P G Sbjct: 288 GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKN 347 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F S I + +PT SP G + + S L Sbjct: 348 IVFMNQSSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSL 406 Query: 419 YSIDLNGRN----ETLINTPAYASDPQWVG 444 + L+G N ET N P W Sbjct: 407 DMVSLDGDNHFNIETADNGNILIQSPSWSP 436 >gi|56707949|ref|YP_169845.1| TolB protein precursor [Francisella tularensis subsp. tularensis SCHU S4] gi|110670420|ref|YP_666977.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC198] gi|254370438|ref|ZP_04986443.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC033] gi|254874753|ref|ZP_05247463.1| tolB protein [Francisella tularensis subsp. tularensis MA00-2987] gi|67461899|sp|Q5NGJ7|TOLB_FRATT RecName: Full=Protein tolB; Flags: Precursor gi|118574581|sp|Q14HZ9|TOLB_FRAT1 RecName: Full=Protein tolB; Flags: Precursor gi|56604441|emb|CAG45473.1| TolB protein precursor [Francisella tularensis subsp. tularensis SCHU S4] gi|110320753|emb|CAL08856.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC198] gi|151568681|gb|EDN34335.1| TolB protein precursor [Francisella tularensis subsp. tularensis FSC033] gi|254840752|gb|EET19188.1| tolB protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 439 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 182/450 (40%), Gaps = 26/450 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + I + V + + A V P+ + V +D+ +V+ Sbjct: 1 MRNGMRKIIAGVFIFVFLISNLYADLVAEVT---TGVIQKPLVTVVSDNV-VDQFPQQVN 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL + + D+ K +I +IP W SL + +V + + V Sbjct: 57 SVIVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTV 110 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 E ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 111 EVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNP 170 Query: 186 SGI--IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L + D DG N + D + P +S + + + Y++Y + VY ++ Sbjct: 171 YARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLE 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTL 301 + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 230 IATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLSTKALKRITIN- 287 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL 360 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P G Sbjct: 288 GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKN 347 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F S I + +PT SP G + + S L Sbjct: 348 IVFMNQSSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSL 406 Query: 419 YSIDLNGRN----ETLINTPAYASDPQWVG 444 + L+G N ET N P W Sbjct: 407 DMVSLDGDNHFNIETADNGNILIQSPSWSP 436 >gi|118496965|ref|YP_898015.1| group A colicin translocation; tolB protein [Francisella tularensis subsp. novicida U112] gi|194324194|ref|ZP_03057968.1| TolB amino- domain family protein [Francisella tularensis subsp. novicida FTE] gi|166988077|sp|A0Q4U6|TOLB_FRATN RecName: Full=Protein tolB; Flags: Precursor gi|118422871|gb|ABK89261.1| group A colicin translocation; tolB protein [Francisella novicida U112] gi|194321641|gb|EDX19125.1| TolB amino- domain family protein [Francisella tularensis subsp. novicida FTE] Length = 435 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 103/444 (23%), Positives = 182/444 (40%), Gaps = 24/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + + + + +V P+ + V +D+ +V+ V+ D Sbjct: 1 MRKIIAGVSIFVFLISNLYADLVAEVT-TGVIQKPLVTVVSDNV-VDQFPQQVNSVIVAD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + + D+ K +I +IP W SL + +V + K + VE ++ Sbjct: 59 LNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTKNAYNNYTVEVQILK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--I 189 D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 113 RNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNPYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 LYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ IVF SDREG+ +YV N Q I K ++P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKNIVFMNQ 349 Query: 367 SGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + +PT SP G + + S L + L+ Sbjct: 350 SSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSLDMVSLD 408 Query: 425 GRN----ETLINTPAYASDPQWVG 444 G N ET N P W Sbjct: 409 GDNHFNIETADNGNILIQSPSWSP 432 >gi|322435206|ref|YP_004217418.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] gi|321162933|gb|ADW68638.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] Length = 449 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 104/434 (23%), Positives = 196/434 (45%), Gaps = 32/434 (7%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSI------DELGGKVSEVVSKDLQRSDVFNLISQD 85 +K+ + + + +A F S D L V+ DL + +F+++S+ Sbjct: 24 AQGDIKLELSGSGADRIRLATANFKSGTLDPKNDALRHTFDTVLYDDLHNAGIFDMVSKS 83 Query: 86 SFKQKITNPDSIPRFQDWNS--LGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK--QIIG 141 Q + W+ + A ++ G + G RL V L+DVK+ + Q++ Sbjct: 84 MAPQATPGSPTEINLPQWSGAPVNASMVAFGALGVTGT-RLAVNGFLFDVKNTQFPQVLA 142 Query: 142 KKF--FSSPASWRKIAHTISDDIYQSITG-EKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 K++ +S + R+IAH +D+I ++G G ++I FV + + MD Sbjct: 143 KQYGEEASEDAARQIAHRFADEIILRLSGGTNGIAETKIYFVHLDGGN----KEIWEMDY 198 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG+N +T S + PR SP+ ++A+++ +D ++ + ++R Sbjct: 199 DGSNQHPVT-SLGSVSVSPRVSPDNTRLAFSSLG-KDGFQIKMFSLLLNRMVSFPAGGGG 256 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIV 317 ++P +SS+GK+ S + +IY D ++ R+T+ ++S ++P +QI Sbjct: 257 TNVSPAWSSDGKQLAFSSSRTGDNEIYIADANGGSSRRITSFAGPDVSPVFNPRSGAQIA 316 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKF 371 + S R G QLY M+++GS R++ A+ P WSP G +AF Sbjct: 317 WISGRSGLPQLYTMETDGSGVTRLTDGGYAT--SPSWSPNGQFLAFAWNRKYGPGAPGGQ 374 Query: 372 AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD-TGSKLYSIDLNGRNET 429 I VM+ + L D P+WSP GR ++F+ +G + SK++++ +G + Sbjct: 375 DIYVMEIASKRWIQLTHDMGPCDFPSWSPDGRHIVFANSPNGRASSSKIFTMLADGTDRH 434 Query: 430 LINTPAYASDPQWV 443 + T A + P W Sbjct: 435 AL-TGAGSDMPNWS 447 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 69/177 (38%), Gaps = 4/177 (2%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + +I+ +D + +T+ +++S SPD++++ F S + Q+ Sbjct: 179 TKIYFVHLDGGNKEIWEMDYDGSNQHPVTSLGSVSVSPRVSPDNTRLAFSSLGKDGFQIK 238 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE- 388 + + + P WS G +AF+ I + +G R + Sbjct: 239 MFSLLLNRMVSFPAGGGGTNVSPAWSSDGKQLAFSSSRTGDNEIYIADANGGSSRRITSF 298 Query: 389 DSNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +P ++P SG + + + G +LY+++ +G T + YA+ P W Sbjct: 299 AGPDVSPVFNPRSGAQIAWISGRSG--LPQLYTMETDGSGVTRLTDGGYATSPSWSP 353 >gi|229160030|ref|ZP_04288034.1| WD40-like Beta Propeller [Bacillus cereus R309803] gi|228623467|gb|EEK80289.1| WD40-like Beta Propeller [Bacillus cereus R309803] Length = 298 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 151/285 (52%), Gaps = 12/285 (4%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ++I + S+I F S + + VM+ DG+N +T + D FEP +SP+ Sbjct: 22 KTICSIRKVVISKIAFSSNRDGN----FEIYVMNPDGSNQTNITNNPDN-DFEPTWSPDG 76 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 QK+A+++ D +I +Y+M+ I N + L P +S +G++ S +D + Sbjct: 77 QKIAFSSIRDGNI-EIYVMNAD-GSNQTNITNNPNDDLEPAWSPDGQKIAFSSFRDGNSE 134 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY +++ RLTN + ++SPD +I F S+R G ++YVM +NGS+Q I+ Sbjct: 135 IYVMNVDGTNQTRLTNNPASDSKPTWSPDGQKIAFSSNRNGPLEIYVMNANGSNQTNITN 194 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGR 402 + + F+P WSP G IAFT E I V+ DGS + L + PTWSP G+ Sbjct: 195 NPDG-DFEPAWSPDGQKIAFTSVRNENLEIYVINVDGSNQTRLTNSQGDNSLPTWSPDGQ 253 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVGFM 446 + FS ++G+ ++Y ++ +G N+T + N PA S+P W FM Sbjct: 254 KIAFSSTRNGNR--EIYVMNADGSNQTNITNNPAADSEPAWSPFM 296 >gi|167626687|ref|YP_001677187.1| group A colicin translocation protein TolB [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596688|gb|ABZ86686.1| group A colicin translocation; TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 435 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 102/427 (23%), Positives = 183/427 (42%), Gaps = 23/427 (5%) Query: 30 TSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 TS+ A + + + +D+ +V+ ++ DL + DS K Sbjct: 17 TSLQAELVATVTTGVIQKPLVTVISNNVVDQFPQQVNSIIVSDLNHNGKLQ--GDDSIKY 74 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS-SP 148 +I +IP W SL + +V + K+ + VE +++ D I + + S Sbjct: 75 EINQSQNIP----WKSLKSDYVVLTKYTKDSNNSYTVEVQIYKRNDTSYIRSITYKNIST 130 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANIRYL 206 A R +AH +++ +YQ +TGE+G F +++ +V S L + D DG N + Sbjct: 131 ALVRPLAHKVANYVYQKLTGEQGFFLTKLAYVQVSNPYARYGRIYELVISDYDGYNKHTV 190 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 D + P +S + + + Y++Y + VY +D + RI NF+ + +P FS Sbjct: 191 LRQSDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLDIATGK-VTRISNFKGINSSPSFS 248 Query: 267 SNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 NGK +++ K + +IY ++L + A +R+T IN + +SP+ IVF SDR+G Sbjct: 249 PNGKEIALALSKGYSDQTNIYILNLATKALKRITIN-GINTAPKFSPNGQSIVFTSDRDG 307 Query: 325 KEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGS 381 + +YV N + ++S Y +P ++P G I F S I Sbjct: 308 RPNIYVAPVNSRYPQSSKLSSRIYQGY-EPNYTPDGKDIVFMNQSRSSGTQIADFNLANG 366 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA---- 437 + + +PT SP G + + + S L + L+G N ++T Sbjct: 367 SVTNITNGKSDSSPTVSPFGNMIAYIST-NSRGYSSLDMVSLDGDNHFNVDTANNGNILI 425 Query: 438 SDPQWVG 444 P W Sbjct: 426 QSPSWSP 432 >gi|224457030|ref|ZP_03665503.1| TolB protein precursor [Francisella tularensis subsp. tularensis MA00-2987] gi|282159134|gb|ADA78525.1| TolB protein precursor [Francisella tularensis subsp. tularensis NE061598] Length = 435 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 102/444 (22%), Positives = 181/444 (40%), Gaps = 24/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + + + + +V P+ + V +D+ +V+ V+ D Sbjct: 1 MRKIIAGVFIFVFLISNLYADLVAEVT-TGVIQKPLVTVVSDNV-VDQFPQQVNSVIVAD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + + D+ K +I +IP W SL + +V + + VE ++ Sbjct: 59 LNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTVEVQILK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--I 189 D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 113 RNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNPYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 LYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLSTKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ IVF SDREG+ +YV N Q I K ++P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKNIVFMNQ 349 Query: 367 SGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + +PT SP G + + S L + L+ Sbjct: 350 SSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSLDMVSLD 408 Query: 425 GRN----ETLINTPAYASDPQWVG 444 G N ET N P W Sbjct: 409 GDNHFNIETADNGNILIQSPSWSP 432 >gi|283850886|ref|ZP_06368172.1| WD40 domain protein beta Propeller [Desulfovibrio sp. FW1012B] gi|283573809|gb|EFC21783.1| WD40 domain protein beta Propeller [Desulfovibrio sp. FW1012B] Length = 442 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 178/453 (39%), Gaps = 21/453 (4%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFT-KFVSID 59 M++R + + LL+ + + + V + +++ F Sbjct: 1 MTMRA-TKRFTGVLGAVVLLVACLLSGQAGAQQTSLAVDIQGPGQAKMNLVMARPFAGGG 59 Query: 60 EL--GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNP-DSIPRFQDWNSLGAQVLVTGRV 116 ++ K+ ++++KDLQ L+ + ++ F+ ++ VLVT Sbjct: 60 QMSPADKLQDLINKDLQFLPFLQLVPPSNIPGQLGGAKAEQIDFKPFSLAKVDVLVTANW 119 Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNS 175 G + VE R ++V +K ++GK + + A IA ++ ++TG+ G FNS Sbjct: 120 TP-GTNLGNVELRAFEVYSQKVLVGKGYDGVTDAQLPDIADRFCMELMAALTGQGGFFNS 178 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDE 234 +I FV S G + + G + +T D + P +S + +++ + Sbjct: 179 QIAFVKPSSGKGT---DIWTVRPMGRGLTRVTSYNDLGMAVSPAWSFDGRRIVFTLIGSR 235 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 YL P+ + +++PRF +G + +S+ DIY + Sbjct: 236 ---SHYLGVWSGGGKPQVYTLPTTNVVSPRFLPDG-QIAVSLSLRGKADIYLLTGGQQPG 291 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + + I++S S+ + + SD G +YV G +RI+ + +P Sbjct: 292 RAIASGPGIDVSPSFDASGRTMAYVSDETGSPNIYVKDVGGGSGRRITSSGYNT--NPSI 349 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGD 413 SP G L+AFTK G + V QE + + P+++P G + F+ + G Sbjct: 350 SPDGKLVAFTKQMGGAQKVFVHDLGTGQETQVTSGGGSDENPSFAPDGYFIAFASTRSGQ 409 Query: 414 TGSKLYSIDLNGRNETLINTP-AYASDPQWVGF 445 K+Y +G ++ T A P W Sbjct: 410 K--KIYVTTRHGAPPVMVPTGDGPAQMPSWGPL 440 >gi|254875813|ref|ZP_05248523.1| TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841834|gb|EET20248.1| TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 438 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 187/445 (42%), Gaps = 25/445 (5%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 NM+ + + + +V P+ + V +D+ +V+ ++ Sbjct: 4 NMRKIITGFSIFVFLISSLYADLVAEVT-TGVIQKPLVTVISNNV-VDQFPQQVNSIIVS 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL + DS K +I +IP W SL + +V + K+ + +E +++ Sbjct: 62 DLNHNGKLQ--GDDSIKYEINQSQNIP----WKSLKSDYVVLTKYTKDSNNSYTIEVQIY 115 Query: 132 DVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI-- 188 D I + + + R +AH +++ +YQ +TGE+G F +++ +V S Sbjct: 116 KRNDTSYIRSITYKNISTTLVRPLAHKVANYVYQKLTGEQGFFLTKLAYVQVSNPYARYG 175 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 176 RIYELVISDYDGYNKHTVLRQSDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK 234 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINIS 306 RI NF+ + +P FS NGK +++ K + +IY ++L + A +R+T IN + Sbjct: 235 -VTRISNFKGINSSPSFSPNGKEIALALSKGYSDQTNIYILNLATKALKRITIN-GINTA 292 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFT 364 +SP+ IVF SDR+G+ +YV N + ++S Y +P ++P G I F Sbjct: 293 PKFSPNGQSIVFTSDRDGRPNIYVAPVNSRYPQSSKLSSRIYQGY-EPNYTPDGKDIVFM 351 Query: 365 KFS-GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 S I + + +PT SP G + + + S L + L Sbjct: 352 NQSRSSGTQIADFNLANGSVTNITNGKSDSSPTVSPFGNMIAYIST-NSRGYSSLDMVSL 410 Query: 424 NGRNETLINTPAYA----SDPQWVG 444 +G N ++T P W Sbjct: 411 DGDNHFNVDTANNGNILIQSPSWSP 435 >gi|254369035|ref|ZP_04985048.1| protein tolB precursor [Francisella tularensis subsp. holarctica FSC022] gi|157121956|gb|EDO66126.1| protein tolB precursor [Francisella tularensis subsp. holarctica FSC022] Length = 439 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 182/450 (40%), Gaps = 26/450 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + I + V + + A V P+ + V +D+ +V+ Sbjct: 1 MRNGMRKIIAGVFIFVFLISNLYADLVAEVT---TGVIQKPLVTVVSDNV-VDQFPQQVN 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL + + D+ K +I +IP W SL + +V + + V Sbjct: 57 SVIVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTV 110 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESV- 184 E ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 111 EVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNL 170 Query: 185 -VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L + D DG N + D + P +S + + + Y++Y + VY ++ Sbjct: 171 YARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLE 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTL 301 + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 230 IATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN- 287 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL 360 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P G Sbjct: 288 GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKN 347 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F S I + +PT SP G + + S L Sbjct: 348 IVFMNQSSRTSGTQIADFNLVNGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSL 406 Query: 419 YSIDLNGRN----ETLINTPAYASDPQWVG 444 + L+G N ET N P W Sbjct: 407 DMVSLDGDNHFNIETADNGNILIQSPSWSP 436 >gi|187931255|ref|YP_001891239.1| group A colicin translocation; tolB protein [Francisella tularensis subsp. mediasiatica FSC147] gi|226705884|sp|B2SET5|TOLB_FRATM RecName: Full=Protein tolB; Flags: Precursor gi|187712164|gb|ACD30461.1| group A colicin translocation; tolB protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 435 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 102/444 (22%), Positives = 181/444 (40%), Gaps = 24/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + + + + +V P+ + V +D+ +V+ V+ D Sbjct: 1 MRKIIAGVFIFVFLISNLYADLVAEVT-TGVIQKPLVTVVSDNV-VDQFPQQVNFVIVAD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + + D+ K +I +IP W SL + +V + + VE ++ Sbjct: 59 LNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTVEVQILK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--I 189 D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 113 RNDTSYLQAITYKNINVSLMRALAHKISNYVYQKLTGNQGFFLTKLAYVKVSNPYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 LYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLSTKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ IVF SDREG+ +YV N Q I K ++P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKNIVFMNQ 349 Query: 367 SGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + +PT SP G + + S L + L+ Sbjct: 350 SSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSLDMVSLD 408 Query: 425 GRN----ETLINTPAYASDPQWVG 444 G N ET N P W Sbjct: 409 GDNHFNIETADNGNILIQSPSWSP 432 >gi|134302258|ref|YP_001122227.1| beta propeller repeat-containing outer membrane protein [Francisella tularensis subsp. tularensis WY96-3418] gi|166229978|sp|A4IYV5|TOLB_FRATW RecName: Full=Protein tolB; Flags: Precursor gi|134050035|gb|ABO47106.1| outer membrane protein/ tol-pal system beta propeller repeat protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 435 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 103/444 (23%), Positives = 181/444 (40%), Gaps = 24/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + + + + A V T P+ + V +D+ +V+ V+ D Sbjct: 1 MRKIIAGVFIFVFLISNLYA-ALVAEVTTGVIQKPLVTVVSDNV-VDQFPQQVNSVIVAD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + + D+ K +I +IP W SL + +V + + VE ++ Sbjct: 59 LNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTVEVQILK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--I 189 D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 113 RNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNPYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 LYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI N++ + +P S +GK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRITNYKGINSSPSLSPDGKEIALALSKGYSDQTNIYIMNLSTKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ IVF SDREG+ +YV N Q I K ++P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKNIVFMNQ 349 Query: 367 SGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + +PT SP G + + S L + L+ Sbjct: 350 SSRTSGTQIADFNLANGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSLDMVSLD 408 Query: 425 GRN----ETLINTPAYASDPQWVG 444 G N ET N P W Sbjct: 409 GDNHFNIETADNGNILIQSPSWSP 432 >gi|303248655|ref|ZP_07334909.1| WD40 domain protein beta Propeller [Desulfovibrio fructosovorans JJ] gi|302489911|gb|EFL49837.1| WD40 domain protein beta Propeller [Desulfovibrio fructosovorans JJ] Length = 440 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 98/441 (22%), Positives = 179/441 (40%), Gaps = 20/441 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFT-KFVSIDEL--GGKVSEVV 69 + + L ++L + V + +++ F ++ K+ +++ Sbjct: 10 ISVFGALFMLLGILSGRAPAQTSLAVDIQGPGQAKMNLVQARPFADGGQMTPADKLQDLI 69 Query: 70 SKDLQRSDVFNLISQDSFKQKITNP-DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +KDLQ L+ + +I F+ ++ VLVT + G + VE Sbjct: 70 NKDLQFLPFLQLVPPSNIPGQIGGATADQIDFKPFSMGKIDVLVTSKWTP-GGNLGNVEL 128 Query: 129 RLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 R ++V +K I+GK + + A IA ++ ++TG+ G FNS+I FV S G Sbjct: 129 RAFEVYSQKVIVGKGYDSVTDAQLPDIADRFCMELMAALTGQGGFFNSQIAFVKPSSGKG 188 Query: 188 IIKNSLCVMDRDGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + + G + +T + + P +S + + +A+ YL Sbjct: 189 ---TDIWTVRPTGRGLTRITHYNELGMAESPAWSFDGRSIAFTLIGSR---SHYLGVWSG 242 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 P+ + +++PRF NG + +SV+ DIY ++ L IN+S Sbjct: 243 GGKPQVYTLPSTNVVSPRFLPNG-QIAVSVRMHGKADIYLLNANHQPGRVLAGGPGINVS 301 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+ S + F +D+ G +Y+ +G +RI+ + +P SP G LIA+TK Sbjct: 302 PSFDASGSLMAFVNDQAGNPNIYLQNVSGGSPRRITPSGYNT--NPSLSPDGKLIAYTKQ 359 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G + V Q+ + + P++SP G ++FS + G KLY +G Sbjct: 360 LGGAQKVFVHDMTTGQDTQVTSGGGSDENPSFSPDGYFIVFSSTRSGQK--KLYVTTRHG 417 Query: 426 RNETLINTP-AYASDPQWVGF 445 +I T A P W Sbjct: 418 TPPIMIPTGDGTAQMPCWGPL 438 >gi|241667262|ref|ZP_04754840.1| group A colicin translocation; TolB protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 434 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 99/444 (22%), Positives = 186/444 (41%), Gaps = 25/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + + + +V P+ + V +D+ +V+ ++ D Sbjct: 1 MRKIITGFSIFVFLISSLYADLVAEVT-TGVIQKPLVTVISNNV-VDQFPQQVNSIIVSD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + DS K +I +IP W SL + +V + K+ + +E +++ Sbjct: 59 LNHNGKLQ--GDDSIKYEINQSQNIP----WKSLKSDYVVLTKYTKDSNNSYTIEVQIYK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--I 189 D I + + + R +AH +++ +YQ +TGE+G F +++ +V S Sbjct: 113 RNDTSYIRSITYKNISTTLVRPLAHKVANYVYQKLTGEQGFFLTKLAYVQVSNPYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 IYELVISDYDGYNKHTVLRQSDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI NF+ + +P FS NGK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRISNFKGINSSPSFSPNGKEIALALSKGYSDQTNIYILNLATKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTK 365 +SP+ IVF SDR+G+ +YV N + ++S Y +P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDRDGRPNIYVAPVNSRYPQSSKLSSRIYQGY-EPNYTPDGKDIVFMN 348 Query: 366 FS-GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + + +PT SP G + + + S L + L+ Sbjct: 349 QSRSSGTQIADFNLANGSVTNITNGKSDSSPTVSPFGNMIAYIST-NSRGYSSLDMVSLD 407 Query: 425 GRNETLINTPAYA----SDPQWVG 444 G N ++T P W Sbjct: 408 GDNHFNVDTANNGNILIQSPSWSP 431 >gi|167009212|ref|ZP_02274143.1| TolB protein precursor [Francisella tularensis subsp. holarctica FSC200] gi|169656512|ref|YP_001427788.2| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954015|ref|ZP_06558636.1| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica URFT1] gi|295312604|ref|ZP_06803357.1| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica URFT1] gi|164551580|gb|ABU60832.2| tol-pal system component, TolB protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 439 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 182/450 (40%), Gaps = 26/450 (5%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 + + I + V + + A V P+ + V +D+ +V+ Sbjct: 1 MRNGMRKIIAGVFIFVFLISNLYADLVAEVT---TGVIQKPLVTVVSDNV-VDQFPQQVN 56 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V+ DL + + D+ K +I +IP W SL + +V + + V Sbjct: 57 SVMVADLNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTV 110 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESV- 184 E ++ D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 111 EVQILKRNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNL 170 Query: 185 -VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 L + D DG N + D + P +S + + + Y++Y + VY ++ Sbjct: 171 YARYGRLYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLE 229 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTL 301 + RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T Sbjct: 230 IATGK-VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN- 287 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL 360 IN + +SP+ IVF SDREG+ +YV N Q I K ++P ++P G Sbjct: 288 GINTAPKFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKN 347 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F S I + +PT SP G + + S L Sbjct: 348 IVFMNQSSRTSGTQIADFNLVNGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSL 406 Query: 419 YSIDLNGRN----ETLINTPAYASDPQWVG 444 + L+G N ET N P W Sbjct: 407 DMVSLDGDNHFNIETADNGNILIQSPSWSP 436 >gi|261414610|ref|YP_003248293.1| TolB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371066|gb|ACX73811.1| TolB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325965|gb|ADL25166.1| tol-pal system beta propeller repeat protein TolB [Fibrobacter succinogenes subsp. succinogenes S85] Length = 424 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 85/441 (19%), Positives = 178/441 (40%), Gaps = 26/441 (5%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL---GGKVSE 67 +N L + + + + + V + + + I F + Sbjct: 1 MNKIKLLFVFVAMALAAPAFAAIDTIAVDVGISVFQTMPIGVVPFEEEGTIKWTNEAPHL 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 ++++D S F ++ D F + + ++ VTG K +++++ Sbjct: 61 ILTRDANLSGRFEAVNSDKFDLVLFSKKRARQY-----------VTGTATKLSNGKIKLD 109 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 L+ + + ++G+ + P R+ H+ D + + GE+G ++++ +VS+ Sbjct: 110 CYLYAAETKDVLLGESYTVKPYDVRQAVHSFFDKVVYRLFGERGVASTKLAYVSKI---- 165 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + D DG + R +T I P + + + Y + + L Sbjct: 166 DGVKQVVISDYDGFSRRQITRDSS-INMMPVWQKGNKGLVYVNFRKQRP---NLYAITFG 221 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + +P + L SV + ++Y D+++ + ++ + +S Sbjct: 222 GKETPLFTQFKQTFSPAVNPKTGELLFSVTEGAKTELYRGDMKTGSAQKFLHLKSNQVSP 281 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SP +S+++F SDR G Q+Y + +G+D +RI+ + WSP+GD I +T Sbjct: 282 SWSPFASEVLFTSDRGGSPQVYAVGKDGTDVRRITYMGHYNERA-SWSPEGDRIVYTSMD 340 Query: 368 GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 K I DG+ L + N + PTWSP G+ + F+ + G ++Y + +G Sbjct: 341 DGKMNIYTCALDGTDIIQLTSNAGNNEHPTWSPDGKLIAFASDRGG--NYQIYIMRKDGS 398 Query: 427 NETLINTPAYASDPQWVGFMD 447 T I + + P W F D Sbjct: 399 GVTRITNGSENTSPTWSWFFD 419 >gi|89255760|ref|YP_513122.1| TolB protein precursor [Francisella tularensis subsp. holarctica LVS] gi|115314254|ref|YP_762977.1| TolB protein [Francisella tularensis subsp. holarctica OSU18] gi|254367130|ref|ZP_04983163.1| tolB protein precursor [Francisella tularensis subsp. holarctica 257] gi|119371043|sp|Q2A580|TOLB_FRATH RecName: Full=Protein tolB; Flags: Precursor gi|122325710|sp|Q0BNJ4|TOLB_FRATO RecName: Full=Protein tolB; Flags: Precursor gi|89143591|emb|CAJ78774.1| TolB protein precursor [Francisella tularensis subsp. holarctica LVS] gi|115129153|gb|ABI82340.1| TolB protein [Francisella tularensis subsp. holarctica OSU18] gi|134252953|gb|EBA52047.1| tolB protein precursor [Francisella tularensis subsp. holarctica 257] Length = 435 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 102/444 (22%), Positives = 181/444 (40%), Gaps = 24/444 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+ + + + + +V P+ + V +D+ +V+ V+ D Sbjct: 1 MRKIIAGVFIFVFLISNLYADLVAEVT-TGVIQKPLVTVVSDNV-VDQFPQQVNSVMVAD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L + + D+ K +I +IP W SL + +V + + VE ++ Sbjct: 59 LNHNAKLQ--ANDTIKYEIKQKQNIP----WKSLKSDYVVLTKYTNNSYNNYTVEVQILK 112 Query: 133 VKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESV--VSGII 189 D + + + S R +AH IS+ +YQ +TG +G F +++ +V S Sbjct: 113 RNDTSYLQAITYKNINVSLMRTLAHKISNYVYQKLTGNQGFFLTKLAYVKVSNLYARYGR 172 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + D DG N + D + P +S + + + Y++Y + VY ++ + Sbjct: 173 LYELIISDYDGYNKHVVLRQTDNPIATPSWSNDGRYIVYSSYS-GGSMGVYTLEIATGK- 230 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISA 307 RI N++ + +P FS +GK +++ K + +IY ++L + A +R+T IN + Sbjct: 231 VTRITNYKGINSSPSFSPDGKEIALALSKGYSDQTNIYIMNLATKALKRITIN-GINTAP 289 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ IVF SDREG+ +YV N Q I K ++P ++P G I F Sbjct: 290 KFSPNGQSIVFTSDREGRPNIYVASVNSKYPQSSILSTKIHQAYEPNYTPDGKNIVFMNQ 349 Query: 367 SGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + +PT SP G + + S L + L+ Sbjct: 350 SSRTSGTQIADFNLVNGSVTNITNGKADSSPTVSPYGDMVAYISTNT-RGYSSLDMVSLD 408 Query: 425 GRN----ETLINTPAYASDPQWVG 444 G N ET N P W Sbjct: 409 GDNHFNIETADNGNILIQSPSWSP 432 >gi|320107208|ref|YP_004182798.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319925729|gb|ADV82804.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 444 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 187/445 (42%), Gaps = 32/445 (7%) Query: 19 LLLVLIGGFFPTSIHAFVKV-ATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDL 73 + +V+ F A V + +A F L V+ DL Sbjct: 10 MWMVVAFAAFSRYGSAQDNVFTGTEKGVDRIRVAAADFKPFSADSAALKATFDSVLYADL 69 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNS--LGAQVLVTGRVIKEGKDRLRVEFRLW 131 ++ +F+L+S+ Q S W++ A ++ G + + RL V L+ Sbjct: 70 AQAGIFDLVSKSLLPQLTPGAPSEMNVTQWSANPTNAAMVAFGSLGIKS-GRLIVNGWLF 128 Query: 132 DVKDRK--QIIGKKFF--SSPASWRKIAHTISDDIYQSITG-EKGDFNSRILFVSESVVS 186 D K+ + Q++GK++ ++ S R+IAH +D+I + G G ++I++V Sbjct: 129 DAKNTQYPQVLGKQYAEDANDNSAREIAHKFADEIILRLGGGIPGIAETKIVYVH----G 184 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + +MD DGAN +T + PR SP+ ++A+++ E ++ + + Sbjct: 185 GSGSKEIWMMDYDGANPHPVTH-LGTVSLSPRISPDNSRIAFSSLGREG-FQIRVFSLLL 242 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 +R L+P +S+NG + S + +I+ D + R+T+ ++S Sbjct: 243 NRMIAFPA-AAGTNLSPAWSANGAQIAYSSSRSGDPEIWIADSNGSGPRRVTSFRGPDVS 301 Query: 307 ASYSPD-SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++P SQI + S R G QLY M ++G+ R++ A+ P WSP G + F Sbjct: 302 PVWNPKTGSQIAWISGRTGLPQLYTMDADGAGVTRMTDGGYAT--SPSWSPNGQFLTFAW 359 Query: 366 FS------GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I VM+ + L D P+WSP GR ++++ G ++ Sbjct: 360 DRKYGPGAPGGQDIYVMEIASKRWIQLTHDTGRCDFPSWSPDGRHIVYASNAGGRW--EI 417 Query: 419 YSIDLNGRNETLINTPAYASDPQWV 443 +++ +G ++T P W Sbjct: 418 WTMLADGTQRHKLSTNGANDMPNWS 442 >gi|225872181|ref|YP_002753636.1| tolB protein, putative [Acidobacterium capsulatum ATCC 51196] gi|225793038|gb|ACO33128.1| tolB protein, putative [Acidobacterium capsulatum ATCC 51196] Length = 465 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 92/425 (21%), Positives = 173/425 (40%), Gaps = 32/425 (7%) Query: 39 ATNSANYSPVSIAFTKFVSIDELGGKV------SEVVSKDLQRSDVFNLISQDSFKQKIT 92 + + +A F +V+ DL+ + +F+++S+ + Sbjct: 51 TGTNLGVQRIRLAVAGFKPGTNDSQTFVLKSIFDQVLYSDLENAGIFDMVSKSMAPPAMP 110 Query: 93 NPDSIPRFQDWNSL--GAQVLVTGRVIKEGKDRLRVEFRLWDVKDR--KQIIGKKFFS-- 146 W+ AQ++ G + G +L V+ L+D K+ Q++GK++ + Sbjct: 111 GSPKELVLSQWSQPPSNAQMVAFGTLGVSG-GQLTVQGYLYDTKNADTPQVLGKQYSAQA 169 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 + + R IAH +D+I + G G ++I +V + + VMD DGAN + + Sbjct: 170 NESDARDIAHRFADEIILRLGGIPGIAQTKIYYVVGRG----MHKEIWVMDYDGANKQQV 225 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T P SP+ K+A+ T+ + +++ + + R + + ++P +S Sbjct: 226 THLGSD-SMAPAVSPDNSKLAFETFG-KYGMQIRIYSLLLHRYLHFV-SPGGTTISPSWS 282 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD-SSQIVFESDREGK 325 +G S DIY D R+T N ++P +QI +ES Sbjct: 283 PDGIHLAYSSSGAGNPDIYVSDANGMNRHRITAFRGPNAQPVWNPKTGAQIAWESGMTSL 342 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKD 379 Q+Y M ++GS+ R++ A P WSP G +AF I +M Sbjct: 343 PQIYTMDADGSNVSRLTDGGYA--VSPSWSPNGQFLAFAWDRHYGPGAPGGEDIYIMDIT 400 Query: 380 GSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 + L P+W+P GR ++F R + G T ++S+ NG+ + + ++ Sbjct: 401 THRWVQLTHGQGVNDFPSWAPDGRHIVFQRTEGGRT--DIWSMLANGQQQEQLTHNGSST 458 Query: 439 DPQWV 443 P W Sbjct: 459 MPDWS 463 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 51/225 (22%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF----------- 318 + V + +I+ +D +++T+ +++ + SPD+S++ F Sbjct: 198 TKIYYVVGRGMHKEIWVMDYDGANKQQVTHLGSDSMAPAVSPDNSKLAFETFGKYGMQIR 257 Query: 319 ---------------------------------ESDREGKEQLYVMQSNGSDQKRISQDK 345 S G +YV +NG ++ RI+ + Sbjct: 258 IYSLLLHRYLHFVSPGGTTISPSWSPDGIHLAYSSSGAGNPDIYVSDANGMNRHRITAFR 317 Query: 346 EASYFDPVWSPQ-GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + PVW+P+ G IA+ I M DGS L + +P+WSP+G+ L Sbjct: 318 GPNA-QPVWNPKTGAQIAWESGMTSLPQIYTMDADGSNVSRLTDGGYAVSPSWSPNGQFL 376 Query: 405 IFSRKK----DGDTGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 F+ + G +Y +D+ R L + P W Sbjct: 377 AFAWDRHYGPGAPGGEDIYIMDITTHRWVQLTHGQGVNDFPSWAP 421 >gi|319779142|ref|YP_004130055.1| tolB protein precursor [Taylorella equigenitalis MCE9] gi|317109166|gb|ADU91912.1| tolB protein precursor [Taylorella equigenitalis MCE9] Length = 415 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 186/437 (42%), Gaps = 34/437 (7%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSAN--YSPVSIAFTKFVSIDELGGKVSEVVSK 71 K L + A V+V + N + + I F+ G +++++V+K Sbjct: 8 KFIAFLAFTTFAFLYSQITFAQVEVPLSGVNTVDNRLPIYVADFMGP--RGKQIADIVAK 65 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL S FN+ S + + + D S GA +VTG ++ V +R Sbjct: 66 DLTNSGQFNVTRIASISKDPHDKLDWDKLVDL-SKGAN-IVTGF-----DNKDHVHYRFL 118 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 D +K + ++ S S R IAH ISD Y+ G KG F+++I FVS Sbjct: 119 DPIQQK--VREEARVSNPSQRAIAHKISDYAYEQSIGLKGAFSTKIAFVSGR-------- 168 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 SL + D DG N + L I P +SP+ K+AY +++ + VY+ Sbjct: 169 SLYISDYDGHNAKVLVSGATII--SPAWSPDGSKIAYVSFESGKPI-VYVQQLSTGVRI- 224 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV--DLQSNATERLTNTLFINISASY 309 + +F+ AP +S +G +++ +D DIY V D + + L+++ I + Sbjct: 225 PVASFKGNNSAPAWSPSGVSLAVALSRDALSDIYLVSSDGTTKSPRSLSSSPEIETEPFF 284 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 P++S +VF SDR G Q+Y N RI+ + + P SP + + FT Sbjct: 285 FPNNSGLVFVSDRGGSPQIYKSGLNNGPASRITFNGSQNL-SPRISPDSNSLVFTSLRKG 343 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 K+ I +M ER++ + +PT+SP+G +++ S + + + Sbjct: 344 KYVIALMNLASGDERIISSGPDDLSPTFSPNGMNVMHVSSGKIKISSTVSNFSIT----- 398 Query: 430 LINTPAYASDPQWVGFM 446 I T S W F+ Sbjct: 399 -IPTQGAVSAVAWGPFI 414 >gi|251772667|gb|EES53231.1| putative TolB protein [Leptospirillum ferrodiazotrophum] Length = 438 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 104/447 (23%), Positives = 190/447 (42%), Gaps = 21/447 (4%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG---G 63 + L + +LL + P + A + I + E+ Sbjct: 1 MRRYLLSVLMTGMLLGGMLLAPPPAAKAVDLSVITNETRLSFKIVLVGNMDHKEISLLTK 60 Query: 64 KVSEVVSKDLQRSDVFNLI--SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 + +V +DL + F ++ Q + P +GA+ +V G Sbjct: 61 RGEALVRRDLLETGYFEILTPPPAVLSQLASEPLDSITAHAVAPMGAEGVV-GMQFSLEN 119 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 D +++ + D + ++ K + +S + + H DDI G +G SRI F+ Sbjct: 120 DGVQLHGVVRDPLNGAILLDKIYRTS-GKYALVVHKFVDDILFQFAGIRGVATSRIAFIG 178 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + L MD DG N R +T + + F P +S N+ + Y TY + + Sbjct: 179 RTSHG----YDLFTMDFDGENTRRMTFD-NVLAFNPAWSHNKHHILYVTYLHGEPQIIDY 233 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD---EAMDIYSVDLQSNATERLT 298 R R + ++ + + P FS +GKR +++ + + IY + ERLT Sbjct: 234 DLVRGQRH--LLFSYPGLNITPTFSPDGKRLAVALSRGRPSQHTQIYLYAFATKHLERLT 291 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + N+S ++SP + + F SDR+G Q+++M S+GS+ R++ + + P WSP+G Sbjct: 292 YSRSNNLSPTFSPSGNALAFVSDRDGHPQIFLMDSDGSNVHRLTFNGSYNV-APAWSPRG 350 Query: 359 DLIAFTKFSG-EKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGS 416 D IA+ + + I ++ DG+ ++ + +P+WSP GR L+++R+ G + Sbjct: 351 DWIAYVCMNDMHRPKICLISPDGTSRVMITQGPGRDDSPSWSPDGRFLVYTRQIRGHSKL 410 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWV 443 ID +GR E L N P W Sbjct: 411 AKIWIDGHGR-EFLGNYSRSVLTPSWS 436 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 14/188 (7%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + D++++D T R+T + + ++S + I++ + G+ Q+ Sbjct: 172 SRIAFIGRTSHGYDLFTMDFDGENTRRMTFDNVLAFNPAWSHNKHHILYVTYLHGEPQII 231 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA---IGVMKKDGSQ-ERL 385 Q+ + P +SP G +A G I + ERL Sbjct: 232 DYDLVRG-QRHLLFSYPGLNITPTFSPDGKRLAVALSRGRPSQHTQIYLYAFATKHLERL 290 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYAS 438 SN +PT+SPSG +L F +DG +++ +D +G N + PA++ Sbjct: 291 TYSRSNNLSPTFSPSGNALAFVSDRDGH--PQIFLMDSDGSNVHRLTFNGSYNVAPAWSP 348 Query: 439 DPQWVGFM 446 W+ ++ Sbjct: 349 RGDWIAYV 356 >gi|323698025|ref|ZP_08109937.1| WD40 domain protein beta propeller [Desulfovibrio sp. ND132] gi|323457957|gb|EGB13822.1| WD40 domain protein beta propeller [Desulfovibrio desulfuricans ND132] Length = 435 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 82/448 (18%), Positives = 167/448 (37%), Gaps = 32/448 (7%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID------EL 61 + + + I CLL+ L F S + V + V+I +D Sbjct: 1 MKRITILIAACLLVCLAAAF--ASAQGPLTVDIHGPGQRMVNIVLLPPKGLDGQPVPEAA 58 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITN---PDSIPRFQDWNSLGAQVLVTGRVIK 118 E+V+ DL L+ + + F+ + +T Sbjct: 59 AKAFEELVANDLGYIPFLKLVPVTTLLGGDPSRGVTAQDIDFKPLQLARVDLCLT----- 113 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 G + +E R+++ ++++GK + +A +++TG+KG F+S I Sbjct: 114 TGWNGQYLEARVYETFGGRRVVGKAYRDVADKLPMVADRFCSAFLEALTGKKGFFDSPIA 173 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDIL 237 FV + + + + G + ++ P +S +A+ + L Sbjct: 174 FVKQDGKA----KEIYTVLPQGRGLTQISD-LGGFNLSPAWSAEGDLIAFTHIGNDRHEL 228 Query: 238 RVYLMDTRIDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 +Y T +RI +++P + G S+ + +IY + +R Sbjct: 229 CIYEAKT---HKIRRIAKGLGDTVISPVYGP-GDVLYASLNLNGTTNIYELSKSYKVGKR 284 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 L + +I++S S+ S++ F S R G +Y++ +R++ + + P SP Sbjct: 285 LGASPYIDVSPSFDRTGSKMAFTSGRAGNPHIYLLDMQSGQVRRVTTTGKYN-THPCLSP 343 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 G +A+T + + I + + +E+ L N + P + P G + F+ + G Sbjct: 344 DGRYVAYTHQTSDGHRIFLHDLETGREKQLTFGPGNDEYPAFGPDGYFIAFASSRTG--A 401 Query: 416 SKLYSIDLNGRNETLINTP-AYASDPQW 442 +LY +G I+T A P W Sbjct: 402 YQLYLTTRHGDTPRRISTGKGAAFAPAW 429 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 7/136 (5%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S++ F S +G L M G R T + P SP+ + VAY + Sbjct: 302 SKMAF--TSGRAGNPHIYLLDMQS-GQVRRVTTTGK--YNTHPCLSPDGRYVAYT-HQTS 355 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D R++L D R K++ P F +G + + A +Y + Sbjct: 356 DGHRIFLHDLETGRE-KQLTFGPGNDEYPAFGPDGYFIAFASSRTGAYQLYLTTRHGDTP 414 Query: 295 ERLTNTLFINISASYS 310 R++ + ++ Sbjct: 415 RRISTGKGAAFAPAWD 430 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 1/85 (1%) Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLY 419 IAF K G+ I + G + + +P WS G + F+ + +Y Sbjct: 172 IAFVKQDGKAKEIYTVLPQGRGLTQISDLGGFNLSPAWSAEGDLIAFTHIGNDRHELCIY 231 Query: 420 SIDLNGRNETLINTPAYASDPQWVG 444 + P + Sbjct: 232 EAKTHKIRRIAKGLGDTVISPVYGP 256 >gi|258405705|ref|YP_003198447.1| WD40 domain-containing protein beta Propeller [Desulfohalobium retbaense DSM 5692] gi|257797932|gb|ACV68869.1| WD40 domain protein beta Propeller [Desulfohalobium retbaense DSM 5692] Length = 437 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 84/450 (18%), Positives = 172/450 (38%), Gaps = 25/450 (5%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV-----SIAFTKFVSIDELG 62 + + I CLL + FP +++ + +A + + Sbjct: 1 MRSIYLVIIACLLCLCA---FPAQAQQQIEIDIYGPGQQQLNMYTAPVAALSGPAPGQPA 57 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRVIKE 119 + + + +L F+ + +L++ + Sbjct: 58 EALRQTILDNLGFLPFLAQTESSDVLGGTGLKGVRKKDIDFKRFRLARVDLLLSIGWKPQ 117 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 VE RL+DV ++ ++GK + +A +I ++ G F SR+ Sbjct: 118 SGGLGLVELRLFDVFSQRLMLGKGYRIMDQEQVDVVADRFCAEIVDTLAGNGDVFRSRLA 177 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 FV ++ + ++ + G + + +T + + P +S + +++A+ D+ R Sbjct: 178 FVRQNSTA----KNIWTVGVQGRDPKQITR-LEGVSMSPAWSWDGRRMAFTYLDERR-HR 231 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + L D + + ++ ++P FS G + ++S+ DI+++ L Sbjct: 232 LGLWDRDAGQIKAMVLPGNTL-ISPVFSPQG-QVVLSLDPYGNPDIFTLSDDWTIESPLV 289 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I+IS + ++VF S R G ++V + + +R+S + + P SP G Sbjct: 290 RHWGIDISPQFDEKGEKMVFVSSRLGNPHIFVRDMDSGEVERVSFEGTYN-TSPTISPDG 348 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +A+++ + + I V + R + + N + PTW+P G L FS + G K Sbjct: 349 RFVAYSRRTDDGHRIVVHDLESGASRQITKGPGNDEDPTWAPDGYFLAFSSNRSGT--YK 406 Query: 418 LYSIDLNGRNETLINT-PAYASDPQWVGFM 446 LY NG I T P A+ P W M Sbjct: 407 LYLTTRNGDTPKQIPTGPGAATAPAWGPPM 436 >gi|118588326|ref|ZP_01545735.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] gi|118439032|gb|EAV45664.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] Length = 260 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 5/237 (2%) Query: 15 INLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSK 71 L +L P A V++ N P+ IA F +L ++ V++ Sbjct: 17 RGLAFVLASFVVIAPLPAAALVEIDITQGNIEPLPIALPSFSAEGGDGKLAADMTNVIAA 76 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+RS +F + SF QK + +S PRF DW + AQ LVTG V K+ RLR EFRLW Sbjct: 77 DLKRSGLFRPLDPASFIQKNMSVNSTPRFGDWRQISAQALVTGTVTKQPDGRLRAEFRLW 136 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 DV +Q++G++F+++P +WR++AH I+D IY+ +TGEKG F++RI+FV E+ Sbjct: 137 DVFAAEQMLGQQFYTTPDNWRRLAHIIADAIYERLTGEKGYFDTRIVFVDETGPKDKRVK 196 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +MD+DGAN+RYLT D ++ PRFSP Q++ Y +Y D VYL++ D Sbjct: 197 RLAIMDQDGANVRYLTRG-DDLVLTPRFSPTSQEITYMSYGGTDP-SVYLLNIETDS 251 Score = 38.8 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 359 DLIAFTKFSGEKF----AIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGD 413 I F +G K + +M +DG+ R L + + P +SP+ + + + G Sbjct: 180 TRIVFVDETGPKDKRVKRLAIMDQDGANVRYLTRGDDLVLTPRFSPTSQEITYMSY--GG 237 Query: 414 TGSKLYSIDL 423 T +Y +++ Sbjct: 238 TDPSVYLLNI 247 >gi|206602338|gb|EDZ38819.1| Putative TolB protein [Leptospirillum sp. Group II '5-way CG'] Length = 447 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 120/455 (26%), Positives = 212/455 (46%), Gaps = 30/455 (6%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 ++R ++ L I+LC +L+ G FFP A + +++ + + Sbjct: 6 AIRTWLHRALG--ISLCAILIGGGLFFPARARAVNLNVITNQTALFFKLSYVSLGARNLS 63 Query: 62 GGKV---SEVVSKDLQRSDVFNLIS-----QDSFKQKITNPDSIPRFQDWNSLGAQVLVT 113 +V + ++ +DL+ + F ++ Q S + DS+ + S G + + Sbjct: 64 PSEVRYANALIVRDLEETGYFEIVPLSSGDQRSLGNMVLTGDSVRKLA---SSGLEGVAG 120 Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 ++IK+ V + D + ++ +K+ ++ + R I H DDI TG KG Sbjct: 121 AQLIKDDLGTHLVGI-VRDPVNGTVLLSRKYTTT-GNIRVIIHRFVDDIVFQFTGFKGVA 178 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++RI F+ ++ G L VMD DG I LT R + + P +S ++ + Y +Y Sbjct: 179 DARIAFIGKNRRRG---YDLYVMDFDGEGIHRLTWDR-VLAYTPAWSLSRHLIVYTSYLH 234 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE---AMDIYSVDLQ 290 + ++ D R + F + + P FS N +++ K + +IYS D++ Sbjct: 235 SEP-QILSYDLSTGRRS-PLARFPGLNITPNFSRNSAMLAMALSKSQTSQNTEIYSYDMK 292 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + ERLT + N+S S+SPD SQIVF SDR+G Q++VM S+GS++ RIS + Sbjct: 293 YHRFERLTYSHSNNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRISFTGFYNV- 351 Query: 351 DPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 P WSP+GD IA+ + + I + G + L +P WSP GR+++F+ Sbjct: 352 SPSWSPRGDAIAYVCMNERHRPKICLTTPTGDRSLQLTHGSGQDDSPDWSPDGRTILFTH 411 Query: 409 KKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 + G S + + L+G + L + P P W Sbjct: 412 QVKGH--SYIEKMFLDGTHVHRLGSYPHSVITPVW 444 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 315 QIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +I F +R LYVM +G R++ D+ +Y P WS LI +T + + I Sbjct: 181 RIAFIGKNRRRGYDLYVMDFDGEGIHRLTWDRVLAYT-PAWSLSRHLIVYTSYLHSEPQI 239 Query: 374 GVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS-RKKDGDTGSKLYSIDLNG-RNETL 430 + L P +S + L + K +++YS D+ R E L Sbjct: 240 LSYDLSTGRRSPLARFPGLNITPNFSRNSAMLAMALSKSQTSQNTEIYSYDMKYHRFERL 299 Query: 431 INTPAYASDPQWVG 444 + + P W Sbjct: 300 TYSHSNNLSPSWSP 313 >gi|189220463|ref|YP_001941103.1| Periplasmic component of the Tol biopolymer transport system [Methylacidiphilum infernorum V4] gi|189187321|gb|ACD84506.1| Periplasmic component of the Tol biopolymer transport system [Methylacidiphilum infernorum V4] Length = 365 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 173/401 (43%), Gaps = 50/401 (12%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 ++A V+V +F D ++VS+DL ++ + + Sbjct: 2 LYAQVEVTGGKVRVF-----LEQFQGKD--AENCRKIVSRDLLQTLLVEV---------- 44 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW 151 +P+ R++ +T R+ + +E L D +++++ K F A Sbjct: 45 -SPEENQRYE----------ITARLSDKA-----LEGILVDKVKKRELLHKSFVG--AEM 86 Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R+ AH SD + +++TG KG + +I F+S L +MD DG ++ LT + Sbjct: 87 RQSAHLFSDALLEALTGIKGFSSCKIAFISSETG----FKELYMMDMDGEGLQRLTADK- 141 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I PR+S + +AY +Y VY++ R F + FS + + Sbjct: 142 TISAHPRWSHDHSMIAYTSYKSG-YPDVYIIKLAKHSRI-RFSFFPGVNSGASFSPDDQN 199 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +++ KD +IY + + +LT N S +SPD QIV+ SD G QLY++ Sbjct: 200 IALTLSKDGNPEIYIMGIDGGPPRQLTRNRATNTSPCWSPDGKQIVYTSDERGSIQLYII 259 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + G KR+ S +P WS G IAF+ G +F IG+ + +Q +L Sbjct: 260 SAEGGQPKRLITGNTYS-SEPDWSADGQKIAFSARIGGQFQIGIFNLNTNQASILTTQGG 318 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + P+W+P+ R L+++ + LY +D R +N Sbjct: 319 -EDPSWTPNSRHLVYASQ------GSLYLMDTVSRQSIKLN 352 >gi|332974349|gb|EGK11279.1| WD40 domain protein [Psychrobacter sp. 1501(2011)] Length = 443 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 107/434 (24%), Positives = 184/434 (42%), Gaps = 26/434 (5%) Query: 18 CLLLVLIGGFFPTSIHAF----VKVATNS-ANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 C LL G S HA +++ + + +AF F +S ++ KD Sbjct: 26 CALLASAGLLVGISAHAEEDYDLELTISKKGEVNQNQVAFVPFAGDSG----ISSIIQKD 81 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ + + SQ Q + D W LG +V G G + + F + + Sbjct: 82 LEAMPL-RVTSQGLIGQPHSRDDLAATLPAWQQLGIPYMVIGSSQNVGGNA-SITFEVIE 139 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + I G + + A + A S IY+ ITG+K D N+R+++V E +S Sbjct: 140 VAKGRIIKGTQ-TVTAADSKTAARKASSRIYELITGKKLDLNARLIYVEEKGSGKSKTSS 198 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++D DG+N R L+ D ++ P SP+ + VAY+ ++ ++ D + + + Sbjct: 199 LVLIDADGSNKRLLSQVIDATIYSPAVSPDGRYVAYSVQLKDNSANLWKYDLKTSQLTRL 258 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + + L P FS +G + L S + DIY V+ E + + ++ SY+P+ Sbjct: 259 V-DMKGSSLRPSFSYDGSKILFSSTVNGDADIYRVNSTGGKPELVMAGPYDQVTPSYAPN 317 Query: 313 SSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 S V+ SD + +Y +GS +IS+ A+ +P +SP G I F Sbjct: 318 GS-FVYASDHASPNRPNIYRYNFSGSPV-QISRGGYAT--NPSYSPDGTKIGFLSGRSA- 372 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 +M +GS +AP +SP+G +++S G L L+G Sbjct: 373 ---AIMSNNGSIIANFGATGLDEAPRFSPTGERVVYS---QGAKKGNLVIRYLDGGKVIT 426 Query: 431 INTPAYASDPQWVG 444 + T A P WV Sbjct: 427 LPTDGIAKSPTWVP 440 >gi|196019748|ref|XP_002119033.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens] gi|190577229|gb|EDV18481.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens] Length = 251 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 102/255 (40%), Positives = 149/255 (58%), Gaps = 7/255 (2%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPKRIG 254 MD+DGAN ++LT + I PRF Q++ + +Y ++ +VY++D IG Sbjct: 1 MDQDGANFKFLTSGNEFI-LSPRFDMKSQRITFMSYKNKKNPPKVYVLDLETGEQ-DLIG 58 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDS 313 + M AP FS + ++S+ K +IY +DL + + LTN FI+ S SYSPD Sbjct: 59 DMAGMTFAPNFSPDNNHVVMSLAKKGTTNIYEIDLNTKIKKELTNIYGFIDTSPSYSPDG 118 Query: 314 SQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +I+F SDR G+ Q+YVM +G + K+IS E SY P+WSP G IAFTK F Sbjct: 119 KKILFNSDRGGRRTQIYVMDRDGQNIKKISS-GEGSYRTPIWSPDGKWIAFTKILLGNFY 177 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 IG+MK DGS ERLL + P+W+P+ R++IF R+K D +K+Y+ID++G NE +I Sbjct: 178 IGIMKPDGSDERLLTSSWLEEGPSWAPNSRTIIFGRQKR-DGSNKIYAIDIDGNNERIIY 236 Query: 433 TPAYASDPQWVGFMD 447 TP S P W ++ Sbjct: 237 TPTDGSQPSWSAHLN 251 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 74/169 (43%), Gaps = 5/169 (2%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 ++ +D + + LT I P +SP+ +K+ + + ++Y+MD R Sbjct: 83 KGTTNIYEIDLNTKIKKELTNIYGFIDTSPSYSPDGKKILFNSDRGGRRTQIYVMD-RDG 141 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + K+I + P +S +GK + I + + LT++ + Sbjct: 142 QNIKKISSGEGSYRTPIWSPDGKWIAFTKILLGNFYIGIMKPDGSDERLLTSSW-LEEGP 200 Query: 308 SYSPDSSQIVFESD-REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 S++P+S I+F R+G ++Y + +G++++ I + S P WS Sbjct: 201 SWAPNSRTIIFGRQKRDGSNKIYAIDIDGNNERIIYTPTDGS--QPSWS 247 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 12/156 (7%) Query: 162 IYQSITGEKGDFNSRILF------VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 I + +T G ++ + + + G + + VMDRDG NI+ ++ S + Sbjct: 97 IKKELTNIYGFIDTSPSYSPDGKKILFNSDRGGRRTQIYVMDRDGQNIKKIS-SGEGSYR 155 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +SP+ + +A+ + Y+ + D + +R+ + P ++ N + + Sbjct: 156 TPIWSPDGKWIAFTKILLGNF---YIGIMKPDGSDERLLTSSWLEEGPSWAPNSRTIIFG 212 Query: 276 VQ-KDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 Q +D + IY++D+ N ER+ T S+S Sbjct: 213 RQKRDGSNKIYAIDIDGNN-ERIIYTPTDGSQPSWS 247 >gi|299138486|ref|ZP_07031665.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] gi|298599732|gb|EFI55891.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] Length = 445 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 102/456 (22%), Positives = 192/456 (42%), Gaps = 33/456 (7%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAF---VKVATNSANYSPVSIAFTKFVSIDELGGK 64 + + N+ L VL S+HA + A +++A K + D K Sbjct: 1 MKSIRAGKNVSLFAVLFASIAVPSMHAQDWFHLETSGGATRIRIAVANFKPQAGDPAAYK 60 Query: 65 --VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVT--GRVIKEG 120 + DL + +F+++S+D Q + W++ A + G V Sbjct: 61 HTFDTTLFADLTAAGLFDMVSKDMIPQSTPGTQAEISLAQWSAAPASAAMIAFGNVG-VA 119 Query: 121 KDRLRVEFRLWDVKDRK--QIIGKKF--FSSPASWRKIAHTISDDIYQSITG-EKGDFNS 175 DRL V L D K+ + Q+ K++ +S S R+IAH +D+I + G G + Sbjct: 120 NDRLVVNGFLDDAKNAQYPQVFAKQYNEAASDDSARQIAHRFADEIIARLGGGVSGIAET 179 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +I + + + MD DGAN +T I PR SP+ +VA+++ +D Sbjct: 180 KIYYSKRTGTG----KEIWEMDYDGANQHEITH-LGAISISPRVSPDNSRVAFSSLG-KD 233 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++ + + R + ++P ++ +G++ S + +I+ D + Sbjct: 234 GFQIKMYSLLLGRLVN-FTSAGGTNVSPAWAPSGQQLAFSSSRTGDPEIWISDPEGRVAH 292 Query: 296 RLTNTLFINISASYSPD-SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++T+ + ++S +++P QI + S R QLY+M ++GS +R++ A+ P W Sbjct: 293 KITSFIGPDVSPTWNPKTGGQIAWISGRTHLPQLYIMDADGSGVQRLTDGGYAT--SPSW 350 Query: 355 SPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFS 407 SP G + F I VM+ + L D P+WSP GR ++F+ Sbjct: 351 SPNGQFLTFAWDRKYGPGAPGGQDIYVMEIASKKWIQLTHDIGPCDFPSWSPDGRHIVFA 410 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +++ S+ +G + + T A + P W Sbjct: 411 --NGNGAHTRIMSMLADGTQKQAL-TGAGSDMPNWS 443 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 5/177 (2%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + S + +I+ +D +T+ I+IS SPD+S++ F S + Q+ Sbjct: 179 TKIYYSKRTGTGKEIWEMDYDGANQHEITHLGAISISPRVSPDNSRVAFSSLGKDGFQIK 238 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + + P W+P G +AF+ I + +G + Sbjct: 239 MYSLLLGRLVNFTSAGGTNV-SPAWAPSGQQLAFSSSRTGDPEIWISDPEGRVAHKITSF 297 Query: 390 -SNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +PTW+P +G + + + +LY +D +G + YA+ P W Sbjct: 298 IGPDVSPTWNPKTGGQIAWISGR--THLPQLYIMDADGSGVQRLTDGGYATSPSWSP 352 >gi|301167924|emb|CBW27509.1| putative periplasmic TolB protein [Bacteriovorax marinus SJ] Length = 440 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 100/443 (22%), Positives = 186/443 (41%), Gaps = 30/443 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANY---SPVSIAFTKFVSIDEL-----GGKVSEVVSK 71 L++L + + + + S V +A + +V+ Sbjct: 4 LIILFLSLLCWNAFSQINIVAVGEAELELSKVEVAKPILQGGVSGSFIADASTIMDVIRN 63 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 D F + K+ + + + + + G ++ G + G + L+V + Sbjct: 64 DFS----FYMKKFSVKKELSSISEGGFNYSSFKTQGVSYVIRGFFRQSG-NSLQVTLLVH 118 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK- 190 DV + K + + + S + R AH SD Y+ ITG FNS+++FVS+ + Sbjct: 119 DVANTKVVSEESYTYSGENPRGFAHRFSDTAYKKITGSDSIFNSKMIFVSDRHGNKQTPV 178 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI------LRVYLMDT 244 L +MD DG N + LT ++ P S + KV Y+ +E LRVY ++T Sbjct: 179 KELYMMDFDGGNKKRLTH-HGGVVISPAISHDGTKVLYSLIKNEKSKHRNINLRVYDLET 237 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + + + F G+ L+++ +I+ ++L++ A +RLTN+ + Sbjct: 238 GRNS---LVSSRNGLNSGAVFMPGGESILLTLSHVGNAEIFIMNLKTKALKRLTNSYSPD 294 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + S + + S + F S R GK +Y M KRIS + + P ++P G IAF+ Sbjct: 295 VDPSINENGSIMTFLSGRAGKPMIYTMDMATRAVKRISFVGKFNAT-PRFAPDGKTIAFS 353 Query: 365 KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK---DGDTGSKLYS 420 + +F I + DGS L +D + + PT+S G+ + FS ++ +Y Sbjct: 354 SWLDSRFDIFRIDSDGSNLARLTKDFGSNEDPTYSNDGQFIAFSSQRVLSRTRAVQNIYI 413 Query: 421 IDLNGRNETLINTP-AYASDPQW 442 +D +G I + P+W Sbjct: 414 MDNDGEIIGAITENFGNCTTPRW 436 >gi|213423404|ref|ZP_03356391.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 267 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 8/273 (2%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +V ++ G L V D DG N +++ Q L P +SP+ K+AY T++ Sbjct: 2 TRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESG 59 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++ T + A +++ +F AP FS +G + ++ K ++++Y +DL S Sbjct: 60 R--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQI 117 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++T+ N ++ PDS + F SD+ G+ Q+Y M NG +RI+ + + D Sbjct: 118 RQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQNQ-DADV 176 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 S G + + + I ++L + P+ +P+G +I+S + Sbjct: 177 SSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--M 234 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 GS L + +GR + L T P W ++ Sbjct: 235 GSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL 267 >gi|124514218|gb|EAY55733.1| putative TolB protein [Leptospirillum rubarum] Length = 447 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 208/458 (45%), Gaps = 30/458 (6%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGF--FPTSIHAFVKVATNSANYSPVSIAFTKFVSI 58 M + + LN + + L+++LIG FP A + +++ Sbjct: 1 MQGKRAMRTWLNRVLEIPLIVILIGAALSFPPLARAVNLNVITNQTALFFKLSYVSLGER 60 Query: 59 DELGGKV---SEVVSKDLQRSDVFNLIS-----QDSFKQKITNPDSIPRFQDWNSLGAQV 110 + +V + ++ KDL+ + F L+ Q S DS+ + + G + Sbjct: 61 NLSPSEVRYANALIVKDLEETGYFELVPLSSGDQSSLGNMFLTGDSVRKLAN---SGLEG 117 Query: 111 LVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 + ++IK+ V + D + ++ +K+ ++ + R I H DDI TG K Sbjct: 118 VAGAQLIKDDLGTHLVGI-VRDPVNGTVLLSRKYTTT-GNIRVIIHRFVDDIVFQFTGFK 175 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G ++RI F+ ++ G L VMD DG I LT R + + P +S ++ + Y + Sbjct: 176 GVADARIAFIGKNRRRG---YDLYVMDFDGEGIHRLTWDR-VLAYTPAWSLSRHLIVYTS 231 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE---AMDIYSV 287 Y + ++ D R + F + + P FS N +++ K + +IYS Sbjct: 232 YLHSEP-QILSYDLSTGR-RAPLARFPGLNITPNFSRNSAMLAMALSKSQTSQNTEIYSY 289 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D++ + ERLT + N+S S+SPD SQIVF SDR+G Q++VM S+GS++ RIS Sbjct: 290 DMKVHRFERLTYSHSNNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRISFTGFY 349 Query: 348 SYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLI 405 + P WSP+GD IA+ + + I + G + L +P WSP GR+++ Sbjct: 350 NV-SPSWSPRGDAIAYVCMNERHRPKICLTTPTGDRSLQLTHGSGQDDSPDWSPDGRTIL 408 Query: 406 FSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 F+ + G S + + L+G + L P P W Sbjct: 409 FTHQVKGH--SYIEKMFLDGTHVHRLGAFPHSVITPVW 444 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 315 QIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +I F +R LYVM +G R++ D+ +Y P WS LI +T + + I Sbjct: 181 RIAFIGKNRRRGYDLYVMDFDGEGIHRLTWDRVLAYT-PAWSLSRHLIVYTSYLHSEPQI 239 Query: 374 GVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS-RKKDGDTGSKLYSIDLNG-RNETL 430 + L P +S + L + K +++YS D+ R E L Sbjct: 240 LSYDLSTGRRAPLARFPGLNITPNFSRNSAMLAMALSKSQTSQNTEIYSYDMKVHRFERL 299 Query: 431 INTPAYASDPQWVG 444 + + P W Sbjct: 300 TYSHSNNLSPSWSP 313 >gi|317486270|ref|ZP_07945102.1| tol-Pal system beta propeller repeat protein TolB [Bilophila wadsworthia 3_1_6] gi|316922440|gb|EFV43694.1| tol-Pal system beta propeller repeat protein TolB [Bilophila wadsworthia 3_1_6] Length = 440 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 85/427 (19%), Positives = 172/427 (40%), Gaps = 20/427 (4%) Query: 28 FPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE----LGGKVSEVVSKDLQRSDVFNLIS 83 S A +++ + V++A +S + LG ++ + +L L Sbjct: 21 AAGSSKAAMQIDIYGPGQNIVNLAMAAPLSTGQPAQGLGKELDAAIHDNLSFLPFMRLTD 80 Query: 84 QDSFKQKITNPDSIP---RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 + T P P F+ + GA +LVT + K VE R+++ + + Sbjct: 81 PKAVLGGTTLPGYQPPNVDFKRFQLAGADLLVTAGWPQGDKSGSTVELRVYETFSGQFVF 140 Query: 141 GKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G + + +A D+ +++TG F + + FV SG K + + Sbjct: 141 GNAYSGVTKEEVQDVADRFCADLMKALTGHGDFFLATLAFVKN---SGKNKRDVWITKPT 197 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N+R +T I P +S + + + ++ DD+ R+ +RI + Sbjct: 198 GRNLRKITD-IPGIAMSPSWSLDGRFIVFSHMDDKSHALGVW--DRLTNRVQRIRFPGNT 254 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 ++ P F+ G + +S+ + DI+ ++ L IN+S ++ +++ F Sbjct: 255 VIGPTFTP-GNKVAVSLSTGKNPDIFMLNHAFQKERTLEANGTINVSPTFDAAGTKMAFT 313 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S+R G Q+++ R+++ + +P SP G LIAF++ + E I V Sbjct: 314 SNRMGGPQIFMKDLASGSVSRVTKQGNYN-TEPSMSPDGTLIAFSRLTSEGNRIFVQDLT 372 Query: 380 GSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYA 437 E+ + N P+++P + F+ + G ++Y +G + + T A Sbjct: 373 TGTEQQISFGPGNDVLPSFAPDSYFIAFTSNRSGPN--QIYLTTRHGGDAKKVPTGSGDA 430 Query: 438 SDPQWVG 444 S P+W Sbjct: 431 SFPRWGA 437 >gi|78358671|ref|YP_390120.1| tolB protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221076|gb|ABB40425.1| tolB protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 441 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 183/448 (40%), Gaps = 23/448 (5%) Query: 8 AEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG----- 62 ++ N+ +LL L+ A V++ + +A ++ V+ Sbjct: 1 MKKQNVTFFCAVLLALVLHIARAQA-APVEIDIFGPGQNLTYVAMSEPVTDAGAPLPAMA 59 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVL-VTGRVIK 118 ++ ++ +L + + + T F+ + G +L VTG Sbjct: 60 PELHRLIRHNLGFLPFLDFVDGKTVIGGNTPQAYKAPGIDFRRYLLAGTDLLIVTGWPQT 119 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRI 177 + RVE R+++ ++GK ++ + S +A D + +TG F S + Sbjct: 120 QQGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKFCSDFMKMLTGRGDFFLSTL 179 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 FVS+S + + + G ++R LT + I P +SP+ + V ++ + Sbjct: 180 AFVSQSRNG---QKDIWAVRPTGRDLRQLTAVQ-GIALSPSWSPDGRYVIFSHIGERSHA 235 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 RI+ + I + ++ P F + R +S+ + DI+ ++ + L Sbjct: 236 LGVW--DRINNRTQLIRFPGNTVIGPTFLPD-NRVAVSLAVNGNPDIFLLNHIFKKQKVL 292 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 + I++S S ++ F S R G +++ + +RIS++ + + P SP Sbjct: 293 EQSWGIDVSPSLDATGKKMAFVSSRLGNPNIFLKDLDSGSVRRISREGKYN-TSPDISPD 351 Query: 358 GDLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G LI +++ +G+ I V G ++++ N + P+++P + F+ + G Sbjct: 352 GTLIVYSRRTGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIAFASNRSGK--Y 409 Query: 417 KLYSIDLNGRNETLINTPA-YASDPQWV 443 K+Y +G +++T + AS P W Sbjct: 410 KVYLTTRHGGTPKMVDTGSHDASFPAWG 437 >gi|116619651|ref|YP_821807.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222813|gb|ABJ81522.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 464 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 102/476 (21%), Positives = 176/476 (36%), Gaps = 58/476 (12%) Query: 13 MKINLCLLLVLIGGFFPTSIH-AFVKVATNSANYSPVSIAFTKFVSIDELG---GKVSEV 68 MK +C L G + A + V PV IA + G +E Sbjct: 1 MKKLICFALASAGALLVLAAQDARIVVDRTQG-AIPV-IAIPDLRGSGDAQKFMGAFNET 58 Query: 69 VSKDLQRSDVFNLISQDSFK----QKITNPDSIPRF----------------------QD 102 + D+ S + ++ + S Q+ ++ QD Sbjct: 59 LYNDVNSSGLLKIVPKTSLPLFVPQQPSDFQQPAPPPAPTRGRTPQMTQAASGGGRWMQD 118 Query: 103 WNSL--GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK----QIIGKKFFSS--PASWRKI 154 W+S A L G ++ L+D+ Q+IG ++ S A RK+ Sbjct: 119 WSSPPPQANYLAFG-YTAVQNGVFVLQGWLYDLSKGNPAAAQVIGNRYLGSVDEAGARKV 177 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 AH + +I + G K F + I F S + MD DG N R +T I Sbjct: 178 AHEFAAEIV-GLFGGKSLFGTHIYFSSNR----SGHKEIWAMDPDGKNQRQITRFNS-IS 231 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P SP+ K+A+ ++ +++ R + S+ A F+ +GK+ + Sbjct: 232 TYPNVSPDGTKIAFTSWVKGQPA-IFIFSVDPVRDLRFYNQTASVNQAGSFTPDGKQIVY 290 Query: 275 SVQKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPD-SSQIVFESDREGKEQLYVM 331 + + I+ +L +++ I + +P + IVF S R G +Q+Y M Sbjct: 291 ASSAGNGICCRIFIANLDGTGFRPISSPSAIEVEPKVNPKTGADIVFSSGRSGPQQIYRM 350 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---EKFAIGVMKKDGSQERLLVE 388 +G+D +R++ +P W P G IAF G F I M + L Sbjct: 351 NMDGADVERLTP-GVGEASNPSWHPDGQHIAFAWTQGYATGAFNIFTMNVATREYVQLTH 409 Query: 389 -DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 D + P W+P G ++F++ + S++Y++ NG + T P W Sbjct: 410 GDGKNENPNWAPDGVHIVFAKTRGNS--SQIYTMLANGTQIQQLTTAGQNERPVWG 463 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 77/181 (42%), Gaps = 7/181 (3%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G S + +I+++D ++T I+ + SPD ++I F S +G+ + Sbjct: 196 GTHIYFSSNRSGHKEIWAMDPDGKNQRQITRFNSISTYPNVSPDGTKIAFTSWVKGQPAI 255 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AIGVMKKDGSQERLL 386 ++ + R + ++P G I + +G I + DG+ R + Sbjct: 256 FIFSVDPVRDLRFYNQTASVNQAGSFTPDGKQIVYASSAGNGICCRIFIANLDGTGFRPI 315 Query: 387 VEDSNLQ-APTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWV 443 S ++ P +P +G ++FS + G ++Y ++++G + E L AS+P W Sbjct: 316 SSPSAIEVEPKVNPKTGADIVFSSGRSGPQ--QIYRMNMDGADVERLTPGVGEASNPSWH 373 Query: 444 G 444 Sbjct: 374 P 374 >gi|256828400|ref|YP_003157128.1| WD40 domain-containing protein beta Propeller [Desulfomicrobium baculatum DSM 4028] gi|256577576|gb|ACU88712.1| WD40 domain protein beta Propeller [Desulfomicrobium baculatum DSM 4028] Length = 439 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 91/426 (21%), Positives = 164/426 (38%), Gaps = 29/426 (6%) Query: 35 FVKVATNSANYSPVSIAFTKFVS----------IDELGGKVSEVVSKDLQRSDVFNLISQ 84 + + S V++ + +S ++ + + + FN++S Sbjct: 24 VLNIDIYGPGQSRVNLFVAEALSKDGSGPVGAIPGNAPSELQQRIHANCAFLPFFNMLSG 83 Query: 85 DSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 + F + VLVT VE R ++V + I+G Sbjct: 84 KDIVGGPNPGGYVAQSIDFNKFQLARTDVLVTAAWAPRPGGVGEVELRAYEVYTGRLIVG 143 Query: 142 KKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 K + ++ ++A D+ +++TG+ F S I FV + + + + G Sbjct: 144 KGYGVANNQQIPEVAARFCADLMEALTGQGDFFRSNIAFVKKEG----QRKQVYMATAQG 199 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSM 259 N++ +T D I P +S + QK+ + D + L V+ TR + GN Sbjct: 200 LNLQKITN-LDGIAVSPAWSHDGQKLVFVFLDKKYHNLCVWDRQTRTLDKKRLPGN---T 255 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 ++AP F+ G IS+ DIY ++ + L I+I + ++VF Sbjct: 256 LIAPAFTKTGN-VAISLDMRGNPDIYELNSEYKVVRPLEENWGIDIGPDFDRSGEKMVFV 314 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S+R G +++ KRIS + + P SP G + F + + ++ Sbjct: 315 SNRLGNPHVFLKNMVTGQSKRISLTGKYN-TGPSISPDGSQVVFAQMVNGNHKLFLVDLA 373 Query: 380 GSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYA 437 ER L + + PTWSP G + F+ + G SK+Y +G LI T P A Sbjct: 374 SGHERQLTFGPGSDEDPTWSPDGYFIAFASNRSGP--SKIYLTTKHGDEPILIPTGPGEA 431 Query: 438 SDPQWV 443 + P W Sbjct: 432 TSPAWG 437 >gi|145640336|ref|ZP_01795920.1| translocation protein TolB precursor [Haemophilus influenzae R3021] gi|145274922|gb|EDK14784.1| translocation protein TolB precursor [Haemophilus influenzae 22.4-21] Length = 292 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 129/291 (44%), Gaps = 14/291 (4%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFP-TSIHAFVKVATNSANYSPVSIAFTKFVSIDEL 61 + F ++ + L + +I V++ + IA FV Sbjct: 1 MLNFKGNKMKLLKRLVSVFAIILAITHNVFAGDEVRIVIDEGVDGARPIAVVPFVG--SA 58 Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 +S++V+ DL+ S FN I+ Q T+ + + W+++G +V G+V+ G Sbjct: 59 PEDISKIVADDLRNSGKFNPIAVSQMPQHPTSAAEV-NPEAWSNIGIDAIVIGQVVPSGN 117 Query: 122 DRLRVEFRLWDVKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + ++L D ++ + + R AHT+SD++++ ++G +G F +R Sbjct: 118 G-YSITYQLIDTVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLSGIRGAFRTR 176 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +V + G + V D DG N +++ Q + P +SP+ Q++AY +++++ Sbjct: 177 IAYVVQKN-GGSQPYEVRVADYDGYN-QFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKS 234 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 V + K + +F+ AP FS +G R + +D ++IY + Sbjct: 235 QLV--VQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVM 283 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%) Query: 314 SQIVFESDREGKEQLY---VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 ++I + + G Q Y V +G +Q I P WSP G +A+ F +K Sbjct: 175 TRIAYVVQKNGGSQPYEVRVADYDGYNQF-IVNRSAQPIMSPAWSPDGQRLAYVSFENKK 233 Query: 371 FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + V + +++ + AP +SP G L F+ +DG +Y + Sbjct: 234 SQLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDG--VLNIYVM 283 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 12/150 (8%) Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY---S 286 +Y + Y T D +++ R F R VQK+ Y Sbjct: 143 SYTVTNKWLRYGAHTVSDEVFEKLSGIRG-----AFR---TRIAYVVQKNGGSQPYEVRV 194 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D + + +S ++SPD ++ + S K QL V N +K ++ + Sbjct: 195 ADYDGYNQFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGTRKVVASFQG 254 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + P +SP G +AF I VM Sbjct: 255 HN-GAPAFSPDGSRLAFASSRDGVLNIYVM 283 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 13/98 (13%) Query: 359 DLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDT 414 IA+ + + V DG + ++ + + +P WSP G+ L + ++ Sbjct: 175 TRIAYVVQKNGGSQPYEVRVADYDGYNQFIVNRSAQPIMSPAWSPDGQRLAYVSFENKK- 233 Query: 415 GSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 S+L DLN ++ + PA++ D + F Sbjct: 234 -SQLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAF 270 >gi|190149576|ref|YP_001968101.1| protein tolB precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914707|gb|ACE60959.1| Protein tolB precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 311 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 12/286 (4%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK--Q 138 + + + + + Q W +G +V G+V G V ++L D Sbjct: 13 PVERSKLPAQPGSAAEV-NSQQWTDIGVDSVVVGQVTPTGGG-YNVAYQLVDTLSNPATV 70 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 + F A R+ AHT+SD +++ IT +G F ++I +V + VS L V D Sbjct: 71 LAQGAFNVPAAQIRQGAHTVSDQVFEKITQIRGAFRTKIAYVVQRGVS---SYELRVSDY 127 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG N + S++ L P +SP+ ++AY T++++ +V + D R + + R Sbjct: 128 DGYNAFTVVKSKEP-LMSPEWSPDGSRLAYVTFENKKA-QVVVHDLRSGS-RRVVAALRG 184 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 AP FS +G R + +D +DIY V +LT N S+SPD S I F Sbjct: 185 HNGAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTANAGNNTEPSWSPDGSTIYF 244 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SDR G Q+Y M S+G + SY V S +LI Sbjct: 245 TSDRAGSPQVYRMGSSGGGASPM--GGSGSYNAKVSSDGKNLIMIA 288 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 5/168 (2%) Query: 270 KRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + VQ+ + ++ D + + +S +SPD S++ + + K Q+ Sbjct: 107 TKIAYVVQRGVSSYELRVSDYDGYNAFTVVKSKEPLMSPEWSPDGSRLAYVTFENKKAQV 166 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 V ++ ++ + + P +SP G IAF + I V+ +G + L Sbjct: 167 VVHDLRSGSRRVVAALRGHN-GAPAFSPDGSRIAFASNQDGELDIYVVGANGGKPSKLTA 225 Query: 389 D-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + N P+WSP G ++ F+ + G ++Y + +G + + Sbjct: 226 NAGNNTEPSWSPDGSTIYFTSDRAGS--PQVYRMGSSGGGASPMGGSG 271 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%) Query: 314 SQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++I + R +L V +G + + + KE P WSP G +A+ F +K Sbjct: 107 TKIAYVVQRGVSSYELRVSDYDGYNAFTVVKSKE-PLMSPEWSPDGSRLAYVTFENKKAQ 165 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETL 430 + V R++ + AP +SP G + F+ +DG+ +Y + NG + L Sbjct: 166 VVVHDLRSGSRRVVAALRGHNGAPAFSPDGSRIAFASNQDGE--LDIYVVGANGGKPSKL 223 Query: 431 INTPAYASDPQWVG 444 ++P W Sbjct: 224 TANAGNNTEPSWSP 237 >gi|298529978|ref|ZP_07017380.1| WD40 domain protein beta Propeller [Desulfonatronospira thiodismutans ASO3-1] gi|298509352|gb|EFI33256.1| WD40 domain protein beta Propeller [Desulfonatronospira thiodismutans ASO3-1] Length = 444 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 181/450 (40%), Gaps = 29/450 (6%) Query: 11 LNMKINLCLL-LVLIGGFFPTSIHAF--VKVATNSANYSPVS--IAFTKFVSID-----E 60 + ++ + L + L+ PT A + + ++ +A + + + E Sbjct: 2 IKLRFFIFLSAIFLVVSLLPTRAWAQDSLHIDIFGPGEDRINAFVAPPRDLQSEVLHNPE 61 Query: 61 LGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRVI 117 LG ++ + + +L ++ + F+ +N +L+T + Sbjct: 62 LGSRIYDGLQSNLGLLPFLTQVNPEHILGGPGVEGVRGRDIDFRKFNLSRVDLLLTIGLE 121 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + VE R ++V D++ I+G+ + + ++ + +TG F SR Sbjct: 122 QHAGGPGSVEIRAFEVFDQRMILGRAYDLQDLDQVPLMLRRFCAELMEYLTGNGDFFRSR 181 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + F + + G ++ LT R I P +SP+ ++A+ D Sbjct: 182 LAF----ERKKNGNKDIWSVTPQGNDLTRLTDLR-GITLSPAWSPDGSRIAFTLMRDN-- 234 Query: 237 LRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +L +++ + + + +++P FS G R +S+ DIY +D E Sbjct: 235 -EHHLGIWDLEKGEEEVFSMPGNTVISPAFSPEG-RLALSLDPMGRPDIYWLDDDYGVDE 292 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + I++S S+ +++ F S R G ++V +R+S + + +P S Sbjct: 293 TIMEHWAIDVSPSFDASGTKMAFASGRLGNPHIFVHDFEKGQIQRVSYEGRYN-TNPSIS 351 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 P+GD +AFT+ + + I V+ + +E+ + N + P ++P G + FS + G+ Sbjct: 352 PEGDFVAFTRQTPDGHRIFVVDLETGREKQISSGPGNDEDPAFAPDGYFVAFSSNRSGE- 410 Query: 415 GSKLYSIDLNGRNETLINTP-AYASDPQWV 443 +LY NG I+T A P W Sbjct: 411 -YRLYLTTRNGDEPREISTGEGNAKAPAWG 439 >gi|46581506|ref|YP_012314.1| tolB protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450928|gb|AAS97574.1| tolB protein, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 456 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 88/442 (19%), Positives = 174/442 (39%), Gaps = 26/442 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV------SIAFTKFVSIDELGGKVSEVV 69 L ++ T+ V+V + + T + +G K++ + Sbjct: 23 LFAGLALVFCLAVGTAAAGPVQVDIYGPGQGSLNLAMAAPLGPTPGTPVSGMGVKLNGFI 82 Query: 70 SKDLQRSDVFNLISQDSFK-----QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++L L+ Q + Q +PD + + GA ++VT + Sbjct: 83 NENLSFLPFLRLVDQRAILGGTVMQGYKSPD--IDLKRFQLAGADLVVTAGWPQGDASGS 140 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 VE R+++ K + GK + +A D+ +++TG F S + FV Sbjct: 141 FVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKALTGRGEFFKSTLAFVKH- 199 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G K + ++ G ++R +T P +SP+ + V ++ +DD Sbjct: 200 --DGKNKRDVWLVKPVGRDLRKITN-LPGEALSPSWSPDGRFVVFSHFDDRSHALGVW-- 254 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R+ R +RI + ++ P F + + +S+ DI+ ++ L I Sbjct: 255 DRLTRQVQRIRFPGNTVIGPCFLPD-NKVAVSLSSGRNPDIFLLNHLFKKERELEANPSI 313 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+S S+ +++ F S R G Q+++ RIS+ + +P SP G L+AF Sbjct: 314 NVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRISKTGSYN-TEPSISPDGTLVAF 372 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 TK + I V ER + + P+++P L F+ ++G +++ + Sbjct: 373 TKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSYFLAFTSNRNG--AQQIFLVT 430 Query: 423 LNGRNETLINT-PAYASDPQWV 443 +G + + T P AS +W Sbjct: 431 RHGGDPKRVPTGPGDASFARWG 452 >gi|120601328|ref|YP_965728.1| WD40 domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561557|gb|ABM27301.1| WD40 domain protein beta Propeller [Desulfovibrio vulgaris DP4] Length = 463 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 88/442 (19%), Positives = 174/442 (39%), Gaps = 26/442 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV------SIAFTKFVSIDELGGKVSEVV 69 L ++ T+ V+V + + T + +G K++ + Sbjct: 30 LFAGLALVFCLAVGTAAAGPVQVDIYGPGQGSLNLAMAAPLGPTPGTPVSGMGVKLNGFI 89 Query: 70 SKDLQRSDVFNLISQDSFK-----QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++L L+ Q + Q +PD + + GA ++VT + Sbjct: 90 NENLSFLPFLRLVDQRAILGGTVMQGYKSPD--IDLKRFQLAGADLVVTAGWPQGDASGS 147 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 VE R+++ K + GK + +A D+ +++TG F S + FV Sbjct: 148 FVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKALTGRGEFFKSTLAFVKH- 206 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G K + ++ G ++R +T P +SP+ + V ++ +DD Sbjct: 207 --DGKNKRDVWLVKPVGRDLRKITN-LPGEALSPSWSPDGRFVVFSHFDDRSHALGVW-- 261 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R+ R +RI + ++ P F + + +S+ DI+ ++ L I Sbjct: 262 DRLTRQVQRIRFPGNTVIGPCFLPD-NKVAVSLSSGRNPDIFLLNHLFKKERELEANPSI 320 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+S S+ +++ F S R G Q+++ RIS+ + +P SP G L+AF Sbjct: 321 NVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRISKTGSYN-TEPSISPDGTLVAF 379 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 TK + I V ER + + P+++P L F+ ++G +++ + Sbjct: 380 TKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSYFLAFTSNRNG--AQQIFLVT 437 Query: 423 LNGRNETLINT-PAYASDPQWV 443 +G + + T P AS +W Sbjct: 438 RHGGDPKRVPTGPGDASFARWG 459 >gi|118574578|sp|Q726K4|TOLB_DESVH RecName: Full=Protein tolB; Flags: Precursor Length = 442 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 88/442 (19%), Positives = 174/442 (39%), Gaps = 26/442 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV------SIAFTKFVSIDELGGKVSEVV 69 L ++ T+ V+V + + T + +G K++ + Sbjct: 9 LFAGLALVFCLAVGTAAAGPVQVDIYGPGQGSLNLAMAAPLGPTPGTPVSGMGVKLNGFI 68 Query: 70 SKDLQRSDVFNLISQDSFK-----QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++L L+ Q + Q +PD + + GA ++VT + Sbjct: 69 NENLSFLPFLRLVDQRAILGGTVMQGYKSPD--IDLKRFQLAGADLVVTAGWPQGDASGS 126 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 VE R+++ K + GK + +A D+ +++TG F S + FV Sbjct: 127 FVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKALTGRGEFFKSTLAFVKH- 185 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G K + ++ G ++R +T P +SP+ + V ++ +DD Sbjct: 186 --DGKNKRDVWLVKPVGRDLRKITN-LPGEALSPSWSPDGRFVVFSHFDDRSHALGVW-- 240 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R+ R +RI + ++ P F + + +S+ DI+ ++ L I Sbjct: 241 DRLTRQVQRIRFPGNTVIGPCFLPD-NKVAVSLSSGRNPDIFLLNHLFKKERELEANPSI 299 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+S S+ +++ F S R G Q+++ RIS+ + +P SP G L+AF Sbjct: 300 NVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRISKTGSYN-TEPSISPDGTLVAF 358 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 TK + I V ER + + P+++P L F+ ++G +++ + Sbjct: 359 TKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSYFLAFTSNRNG--AQQIFLVT 416 Query: 423 LNGRNETLINT-PAYASDPQWV 443 +G + + T P AS +W Sbjct: 417 RHGGDPKRVPTGPGDASFARWG 438 >gi|311235155|gb|ADP88009.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio vulgaris RCH1] Length = 445 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 88/442 (19%), Positives = 174/442 (39%), Gaps = 26/442 (5%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV------SIAFTKFVSIDELGGKVSEVV 69 L ++ T+ V+V + + T + +G K++ + Sbjct: 12 LFAGLALVFCLAVGTAAAGPVQVDIYGPGQGSLNLAMAAPLGPTPGTPVSGMGVKLNGFI 71 Query: 70 SKDLQRSDVFNLISQDSFK-----QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 +++L L+ Q + Q +PD + + GA ++VT + Sbjct: 72 NENLSFLPFLRLVDQRAILGGTVMQGYKSPD--IDLKRFQLAGADLVVTAGWPQGDASGS 129 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 VE R+++ K + GK + +A D+ +++TG F S + FV Sbjct: 130 FVELRVYEALSGKLVFGKAYSHVEDGLLPNVADRFCSDLMKALTGRGEFFKSTLAFVKH- 188 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G K + ++ G ++R +T P +SP+ + V ++ +DD Sbjct: 189 --DGKNKRDVWLVKPVGRDLRKITN-LPGEALSPSWSPDGRFVVFSHFDDRSHALGVW-- 243 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R+ R +RI + ++ P F + + +S+ DI+ ++ L I Sbjct: 244 DRLTRQVQRIRFPGNTVIGPCFLPD-NKVAVSLSSGRNPDIFLLNHLFKKERELEANPSI 302 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+S S+ +++ F S R G Q+++ RIS+ + +P SP G L+AF Sbjct: 303 NVSPSFDATGTKMAFTSSRMGGPQVFMKDMTTGQVTRISKTGSYN-TEPSISPDGTLVAF 361 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 TK + I V ER + + P+++P L F+ ++G +++ + Sbjct: 362 TKMTDTGHRIFVYDMVTQSERQVSFGPGRDEQPSFAPDSYFLAFTSNRNG--AQQIFLVT 419 Query: 423 LNGRNETLINT-PAYASDPQWV 443 +G + + T P AS +W Sbjct: 420 RHGGDPKRVPTGPGDASFARWG 441 >gi|196233271|ref|ZP_03132117.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] gi|196222742|gb|EDY17266.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] Length = 564 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 100/426 (23%), Positives = 157/426 (36%), Gaps = 52/426 (12%) Query: 13 MKINLCLLLVLIGGFFPTS-IHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 MK +V S + + IA D ++++ Sbjct: 1 MKKLHAFSVVASCLLLSFSLARGAETPTITISKSDKIPIAIGSIAGADGGPA--AKILQN 58 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL S FNL+ S + + G V Sbjct: 59 DLAMSGYFNLVPSASAGFIVGGTSNGNSLA------------GSVTDR------------ 94 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 K ++ K F S R H +D+I +++TG KG +S++ FV + Sbjct: 95 ---SGKTVLMKTFSGSA---RGKVHAYADEIVETLTGNKGIASSKVAFV----GTHTGHK 144 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + D DG+N+R LT + I PR SP+ + Y Y VY +D A Sbjct: 145 EIYLADADGSNVRQLTNDAN-ISVGPRLSPDGSHLVYTGYKSG-YADVYEIDLGSG-ARN 201 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 RI F +S NG+ + + KD ++Y+ RLT+T + S ++SP Sbjct: 202 RIIKFPGTNTGAAYSPNGRELAVILSKDGNPELYTTSAGGGGAHRLTHTPGVESSPTWSP 261 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +I++ SD G QLY + S G + IS + +P WSP G +AFT G F Sbjct: 262 SGDEIIYSSDDRGGPQLYRISSGGGSGRLISTGHGYN-TEPNWSPDGKKVAFTVRDGG-F 319 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 I V+ + + + P W R LIF+ G L +D G+ TL Sbjct: 320 TIAVLDLGSGNVHTV---GSGEGPAWGADSRHLIFAE------GGSLILLDAQTGQKTTL 370 Query: 431 INTPAY 436 ++ Sbjct: 371 VSGLGQ 376 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%) Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 SS++ F G +++Y+ ++GS+ ++++ D S P SP G + +T + Sbjct: 131 SSKVAFVGTHTGHKEIYLADADGSNVRQLTNDANISV-GPRLSPDGSHLVYTGYKSGYAD 189 Query: 373 IGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETL 430 + + G++ R++ +SP+GR L KDG +LY+ G L Sbjct: 190 VYEIDLGSGARNRIIKFPGTNTGAAYSPNGRELAVILSKDG--NPELYTTSAGGGGAHRL 247 Query: 431 INTPAYASDPQWVG 444 +TP S P W Sbjct: 248 THTPGVESSPTWSP 261 >gi|212704938|ref|ZP_03313066.1| hypothetical protein DESPIG_03005 [Desulfovibrio piger ATCC 29098] gi|212671602|gb|EEB32085.1| hypothetical protein DESPIG_03005 [Desulfovibrio piger ATCC 29098] Length = 437 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 79/442 (17%), Positives = 180/442 (40%), Gaps = 21/442 (4%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFT-----KFVSIDELGGKVSE 67 MK LL + + ++ A ++V + V++A + +G K+ + Sbjct: 1 MKRLAILLALAVTLSLGSTAQAAMRVDIYGPGQNIVNLALAAPITGPQKQANGMGAKLQK 60 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIP---RFQDWNSLGAQVLVTGRVIKEGKDRL 124 +V ++L L S I P P F+ + G+ ++VT Sbjct: 61 LVEENLSFLPFMRLTPAASVLGGILLPGYEPPNLDFKRFQLAGSDIVVTTYWPNGDSGTS 120 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V+ R ++ ++ GK++ A ++A D+ + +TG F S + FV + Sbjct: 121 SVQIRAFETNTGGRLFGKEYPQVRAGDLPEVADRFCADLLEVLTGSGAFFRSTLAFVKK- 179 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 SG + ++ ++ G ++R +T + + P +SP+ + + + D++ Sbjct: 180 --SGRLSANVWLVKPTGRDLRQITNIKGE-AMSPAWSPDGRFIVFTHIDEKSHSLGVW-- 234 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + +R+ ++++ P F+ + + +++ I+ ++ L I Sbjct: 235 DRKKGSVQRVRFPGNVVIGPSFTPD-NKVAVALSNGRYPVIFLLNHGFQKERILEGGNSI 293 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 N+S ++ +++VF S R G Q+++ + R+S++ + + SP G L+ + Sbjct: 294 NVSPTFDRTGTKMVFTSSRLGGPQIFMKDLSSGSITRVSKNGGYN-TEANLSPDGTLVTY 352 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++ + I V ER + + + P++ + F+ + G G +Y Sbjct: 353 SRMTEYGHRIFVQDMVTGLERQITFGPGSDEQPSFCGDSYFIAFASSRGGSRG--IYLTT 410 Query: 423 LNGRNETLINTPAY-ASDPQWV 443 +G + + T AS P+W Sbjct: 411 RHGGDAKKVPTGGGAASFPRWG 432 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 2/160 (1%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + + I P F K+ + + ++++ D R+ Sbjct: 280 GFQKERILEGGNSINVSPTFDRTGTKMVFTSSRLGGP-QIFMKDLSSGSIT-RVSKNGGY 337 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +G S + I+ D+ + ++T + S+ DS I F Sbjct: 338 NTEANLSPDGTLVTYSRMTEYGHRIFVQDMVTGLERQITFGPGSDEQPSFCGDSYFIAFA 397 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S R G +Y+ +G D K++ A+ F P G Sbjct: 398 SSRGGSRGIYLTTRHGGDAKKVPTGGGAASFPRWGMPDGK 437 >gi|218887448|ref|YP_002436769.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758402|gb|ACL09301.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 446 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 82/447 (18%), Positives = 167/447 (37%), Gaps = 23/447 (5%) Query: 10 ELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV------SIAFTKFVSIDELGG 63 ++ + L+ P V++ + + T + G Sbjct: 6 AIHRLMAAVCLIACCALAAPALAVGPVQIDIYGPGQGSLNLALADPLGPTPGTPVTGQGV 65 Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSI---PRFQDWNSLGAQVLVTGRVIK-E 119 K++E++ ++L L + F+ + G ++VT + + Sbjct: 66 KLNEIIRENLSFLPFLRLTDPKAILGGSVLQSYKAPDIDFKRFQIAGTDLVVTAGWPQGD 125 Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 + VE R+++ K + GK ++ +A D+ +++TG F S + Sbjct: 126 APGKPFVELRVYEAYSGKLVFGKGYYDIQETQLPDVADRFCSDLMKALTGRGEFFKSTLA 185 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 FV G K + + G ++R +T P +SP+ + + ++ DD Sbjct: 186 FVK---SGGKNKKDVWLSKPTGRDLRQITN-LPGEAMSPSWSPDARFIVFSHMDDRTHAL 241 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 R+ R +RI + ++ P F + + +S+ + I+ + L Sbjct: 242 GVW--DRLTRQTQRIKFPGNTVIGPTFMPD-NKVAVSLSTGKNPGIFLLSHVFQKERALE 298 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 ++ I++S S+ +++ F S R G Q+++ RIS+ + P SP G Sbjct: 299 DSASIDVSPSFDATGTKMAFCSSRLGGPQIFLKDLTTGQVTRISRSGNYN-TAPSISPDG 357 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 LIAF + + I V ER + + P+++P L F+ + G + Sbjct: 358 TLIAFARMTDFGHRIFVYDMVTQSERQVTFGPGTDETPSFAPDSYFLAFTSTRSG--AKQ 415 Query: 418 LYSIDLNGRNETLINTP-AYASDPQWV 443 +Y I +G + + T AS P W Sbjct: 416 IYLITRHGGDAKRVPTGAGDASFPDWG 442 >gi|94987134|ref|YP_595067.1| periplasmic component of the Tol biopolymer transport system [Lawsonia intracellularis PHE/MN1-00] gi|94731383|emb|CAJ54746.1| Periplasmic component of the Tol biopolymer transport system [Lawsonia intracellularis PHE/MN1-00] Length = 452 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 83/424 (19%), Positives = 168/424 (39%), Gaps = 20/424 (4%) Query: 31 SIHAFVKVATNSANYSPVSIA-----FTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQD 85 + +++ + V +A + V +LG + + +L L + Sbjct: 29 PALSAMQIDIYGPGQNIVHVAMARPIISPGVLATDLGIDLDRAIRNNLSYLPFMRLTDEK 88 Query: 86 SFKQKITNPDSIP---RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + + P F+ + G+ +L+T K VE RL++ K + G Sbjct: 89 AILNGSSLEGYQPPNIDFKRFQLAGSDLLITVGWPKGDHSDSSVELRLYETYSGKFVFGT 148 Query: 143 KFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + S IA D+ +++TG F S + FV + +G + ++ G Sbjct: 149 AYSGVVKSEISNIADKFCADLMKTLTGSGDFFLSTLAFVKQ--GNGKNVRDVWLVKPTGK 206 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 +R +T P +S + + + + DD R+ +RI + ++ Sbjct: 207 ELRQITD-ISGTAMSPSWSIDGRFIVFTHLDDRSHALGVW--DRLTNKIQRIRFPGNTVI 263 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P F + + +S+ + DI+ +D + L + IN+S S+ +++ F S+ Sbjct: 264 GPVFMPD-NKVAVSLSTGKYPDIFLLDHTFQKEKVLEESPAINVSPSFDAKGTKMAFCSN 322 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R Q+++ + R+S+ + +P SP G LIAF++ + + I V Sbjct: 323 RLSNPQIFMKDFSSGQVSRVSRQGCYN-TEPTMSPDGTLIAFSRLTDDGNRIFVQDLLTG 381 Query: 382 QERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASD 439 ER + N + P+++P + F+ + G ++Y I +G + I T AS Sbjct: 382 IERQVTFGPGNDEQPSFAPDSYFIAFTSTRSGKK--QIYLITRHGGDAKQIPTGHGDASF 439 Query: 440 PQWV 443 P+W Sbjct: 440 PRWG 443 >gi|226227348|ref|YP_002761454.1| hypothetical protein GAU_1942 [Gemmatimonas aurantiaca T-27] gi|226090539|dbj|BAH38984.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 420 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 87/408 (21%), Positives = 163/408 (39%), Gaps = 40/408 (9%) Query: 48 VSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLG 107 + IA G ++ +VS+DL SD F ++S S + + + LG Sbjct: 41 LPIA-------GANGDSIARMVSRDLDFSDRFTIVSSSSAPA----VNGAINYALFTKLG 89 Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP----ASWRKIAHTISDDIY 163 +V ++ G V L DV + + F A+WR H +SD + Sbjct: 90 VDGIVQATLLPSGW----VRVALHDVGLKNVKNSRDFPLPTPALSATWRLAVHGVSDGVE 145 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + ITG +G +R+ F + +D DGAN+ +TPS P++ P+ Sbjct: 146 EWITGARGIAQTRVAF--------TRGGRVWTIDSDGANVTAVTPSG----MSPQWLPSG 193 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQKDEAM 282 + + Y+ D + ++ A + + + + + P S +G+ + + D Sbjct: 194 RGIVYSVLD--GVRNPIMLTDLSTGAQRVLASAQGVEHTTPIVSPDGRTVVYARGSDTGT 251 Query: 283 DIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 D+Y + R+T + AS+SPD ++ F SDR G ++Y+ +G++ + + Sbjct: 252 DLYQQSMDGGTPRRITVGRGRASAQASFSPDGQRLAFMSDRSGHPEVYISDLDGTNTELL 311 Query: 342 S---QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 + P WSP G L+AF +G F I + + + D P+W+ Sbjct: 312 TAAAFGDRDYRAGPDWSPDGRLVAFQSRNGGTFQIMTINLRDQSVKQVTNDGRNDDPSWA 371 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 P R ++F+ + G +L+ +D + W + Sbjct: 372 PDSRHVVFTSTRSGTR--QLWIVDTETGRTRQLTFGPETRLSAWSPRL 417 >gi|118588325|ref|ZP_01545734.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] gi|118439031|gb|EAV45663.1| translocation protein TolB precursor [Stappia aggregata IAM 12614] Length = 189 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 93/190 (48%), Positives = 125/190 (65%), Gaps = 2/190 (1%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M APRFS +G+ ++S+Q+ +I+ +DL+S T RLTN I+ S S+SPD SQIVF Sbjct: 1 MTFAPRFSPDGQSVVMSLQQGGNANIFKMDLRSRQTTRLTNDAAIDTSPSFSPDGSQIVF 60 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ESDR G +QLYVM + G +RIS Y PVWSP+GDLIAFTK +F IGVM+ Sbjct: 61 ESDRGGTQQLYVMSAGGGGAQRISF-GPGRYSTPVWSPRGDLIAFTKQHQGRFMIGVMRP 119 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTGSKLYSIDLNGRNETLINTPAYA 437 DG ER+L E + + P WSP+GR L+F R G + G +++++DL G NE + TPA+A Sbjct: 120 DGKGERILTEGYHNEGPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRVETPAFA 179 Query: 438 SDPQWVGFMD 447 SDP W +D Sbjct: 180 SDPSWSPLID 189 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 7/190 (3%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + F PRFSP+ Q V + ++ MD R R R+ N ++ +P FS +G + Sbjct: 1 MTFAPRFSPDGQSVV-MSLQQGGNANIFKMDLR-SRQTTRLTNDAAIDTSPSFSPDGSQI 58 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + +Y + +R++ + +SP I F +G+ + VM+ Sbjct: 59 VFESDRGGTQQLYVMSAGGGGAQRISFGPGRYSTPVWSPRGDLIAFTKQHQGRFMIGVMR 118 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVED 389 +G +RI + + P WSP G ++ F + + + + G E+ + Sbjct: 119 PDGKG-ERILTEGYHNE-GPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRVETP 176 Query: 390 SNLQAPTWSP 399 + P+WSP Sbjct: 177 AFASDPSWSP 186 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 14/190 (7%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 D S ++ + + + I K L + + I P FSP+ ++ + Sbjct: 8 SPDGQSVVMSLQQGGNANIFKMDLR------SRQTTRLTNDAAIDTSPSFSPDGSQIVFE 61 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + D ++Y+M A +RI P +S G + Q I + Sbjct: 62 S-DRGGTQQLYVMSAGGGGA-QRISFGPGRYSTPVWSPRGDLIAFTKQHQGRFMIGVMRP 119 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESD---REGKEQLYVMQSNGSDQKRISQDKE 346 LT ++SP+ +VF D G Q++ + G +++R+ + Sbjct: 120 DGKGERILTEGYHNE-GPAWSPNGRVLVFFRDTPGANGGPQVWTVDLTGYNEQRV--ETP 176 Query: 347 ASYFDPVWSP 356 A DP WSP Sbjct: 177 AFASDPSWSP 186 >gi|317153133|ref|YP_004121181.1| WD40-like beta Propeller containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943384|gb|ADU62435.1| WD40-like beta Propeller containing protein [Desulfovibrio aespoeensis Aspo-2] Length = 440 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 163/424 (38%), Gaps = 29/424 (6%) Query: 32 IHAFVKVATNSANYSPVSIA--FTKFVSIDELG----GKVSEVVSKDLQRSDVFNLISQD 85 + V + V+I K + +L E+V +L LI Sbjct: 27 ASGPLTVDIHGPGQRMVNIILLPPKGLGGSQLPTAQAKAFEELVVNNLNYIPFLKLIPTS 86 Query: 86 SFKQKITN---PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + F+ + +T G + +E R+++ ++++GK Sbjct: 87 ELLGGDPSRGVGGGDIDFKPMQMARIDLCMT-----TGWNGRYLEARVFETFGGRRVVGK 141 Query: 143 KFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + + + A +++TG+KG F+S + FV + + + + G Sbjct: 142 SYNDVGEITLAQAADRFCSAFLEALTGKKGFFDSPVAFVRQDGKA----KEIYTVLPQGR 197 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 ++ +T P +S + K+ + L VY D++ + I Sbjct: 198 ELKRITN-LGGYNLSPSWSADGSKIIFTHIASTRHELGVY--DSKTQKITLYSQGLGQTI 254 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 ++P F G + ++++ + A DI +D L + +I++S S+ +++ F S Sbjct: 255 ISPVFGP-GDKPIVALNVNGATDIQELDASFKPQRVLARSPYIDVSPSFDRTGTKMAFTS 313 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 R G +Y+M + +R++ + + P SP G IA+T +G I + Sbjct: 314 GRAGNPHVYLMDMKSGEVRRVTMTGKYN-THPCLSPDGRYIAYTNRTGSGHRIFLHDLAT 372 Query: 381 SQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYAS 438 +E+ L N + P + P G + F+ + G G KLY +G +I+T P A Sbjct: 373 GREKQLTFGPGNDEYPAFDPDGYFVAFASNRSG--GFKLYLTTRHGDTPRVISTGPGQAF 430 Query: 439 DPQW 442 P W Sbjct: 431 APAW 434 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 7/136 (5%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +++ F S +G L M G R + P SP+ + +AY Sbjct: 307 TKMAF--TSGRAGNPHVYLMDMKS-GEVRRVTMTGK--YNTHPCLSPDGRYIAYTN-RTG 360 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 R++L D R K++ P F +G + + +Y + Sbjct: 361 SGHRIFLHDLATGRE-KQLTFGPGNDEYPAFDPDGYFVAFASNRSGGFKLYLTTRHGDTP 419 Query: 295 ERLTNTLFINISASYS 310 ++ + ++ Sbjct: 420 RVISTGPGQAFAPAWD 435 >gi|148653367|ref|YP_001280460.1| WD40 domain-containing protein [Psychrobacter sp. PRwf-1] gi|148572451|gb|ABQ94510.1| WD40 domain protein beta Propeller [Psychrobacter sp. PRwf-1] Length = 449 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 183/448 (40%), Gaps = 24/448 (5%) Query: 2 SLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAF--VKVATNS-ANYSPVSIAFTKFVSI 58 + R F A + I+L + + ++ + +AF F Sbjct: 18 ARRSFAAMTTTLLISLLGASAALMSVSAQAAEEEYDLEATITKKGETNQNQVAFVPFAGD 77 Query: 59 DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIK 118 VS ++ +LQ + + + SQ Q + D W LG LV G + Sbjct: 78 ST----VSSLIENNLQATPL-KITSQGLIGQPHSRDDLAVTLPAWQQLGIPYLVIGSSKQ 132 Query: 119 EGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRIL 178 +G + + F + +V + I G + + IY+ +TG++ D N+R++ Sbjct: 133 QGGNT-SITFEVIEVAQGRIIKGTQMVQGVDKKAAAN-KAAGRIYELLTGKQIDLNARLV 190 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V E +SL + D DG+N R L D ++ P SP+ + VAY+ ++ Sbjct: 191 YVEEKGSGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAYSVQLKDNSAN 250 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++ D + + + + + + L+P FS +G + L S + DIY V Q E++ Sbjct: 251 LWKQDLQTRQLTRLV-DMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSSQGGKAEQII 309 Query: 299 NTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + +S SY+ + S VF SD + +Y +GS +IS+ A+ +P SP Sbjct: 310 SLPYDQLSPSYASNGS-FVFVSDHASPNRPNIYRYSFSGSPV-QISRGGYAA--NPSISP 365 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 +G I + +M +GS AP +SP+G +++S G S Sbjct: 366 EGTKIGYLSGRSA----AIMSSNGSNVANYGATGIDAAPKFSPTGERVVYS---QGTKNS 418 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 L ++G + T A P WV Sbjct: 419 NLVIRYVDGGKTITLPTEGVAKFPVWVP 446 >gi|163796930|ref|ZP_02190886.1| TolB protein [alpha proteobacterium BAL199] gi|159177677|gb|EDP62228.1| TolB protein [alpha proteobacterium BAL199] Length = 207 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 93/205 (45%), Positives = 133/205 (64%), Gaps = 6/205 (2%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R + +G+F M APRFS +G + ++S+ +D D+Y +DL++ RLTN+ I+ S Sbjct: 3 TRQQEVLGDFPGMTFAPRFSPDGNQVIMSLARDGVTDVYRMDLRTRRVTRLTNSASIDTS 62 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD +Q+ F SDR G +QLYVM SNG KRIS + Y PVWSP+GDLIAFTK Sbjct: 63 PSFSPDGTQVAFNSDRGGAQQLYVMDSNGGGVKRISF-GQGQYATPVWSPRGDLIAFTKI 121 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-----KLYSI 421 +G +F IGVM+ DGS ERL+ ++AP+W+P+GR L++ +++ D+ KL++I Sbjct: 122 AGGQFHIGVMRVDGSGERLISSGYLVEAPSWAPNGRVLVYFKQQRTDSAGRGGETKLFTI 181 Query: 422 DLNGRNETLINTPAYASDPQWVGFM 446 DL G NE + TP ASDP W + Sbjct: 182 DLTGYNEREVVTPLDASDPAWSPLL 206 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 11/206 (5%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + + + F PRFSP+ +V + + + VY MD R R R+ N S+ Sbjct: 3 TRQQEVLGDFPGMTFAPRFSPDGNQVI-MSLARDGVTDVYRMDLRT-RRVTRLTNSASID 60 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +P FS +G + + + A +Y +D +R++ + +SP I F Sbjct: 61 TSPSFSPDGTQVAFNSDRGGAQQLYVMDSNGGGVKRISFGQGQYATPVWSPRGDLIAFTK 120 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-------SGEKFAI 373 G+ + VM+ +GS ++ IS P W+P G ++ + K G + + Sbjct: 121 IAGGQFHIGVMRVDGSGERLISSG--YLVEAPSWAPNGRVLVYFKQQRTDSAGRGGETKL 178 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSP 399 + G ER +V + P WSP Sbjct: 179 FTIDLTGYNEREVVTPLDASDPAWSP 204 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 18/194 (9%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 D N I+ ++ V+ + + L + I P FSP+ +VA+ Sbjct: 22 SPDGNQVIMSLARDGVTDVYRMDLRTRRV------TRLTNSASIDTSPSFSPDGTQVAFN 75 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + D ++Y+MD+ KRI + P +S G + I + + Sbjct: 76 S-DRGGAQQLYVMDSNGGG-VKRISFGQGQYATPVWSPRGDLIAFTKIAGGQFHIGVMRV 133 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRIS 342 + ERL ++ ++ + S++P+ +V+ + R G+ +L+ + G +++ + Sbjct: 134 DGSG-ERLISSGYLVEAPSWAPNGRVLVYFKQQRTDSAGRGGETKLFTIDLTGYNEREVV 192 Query: 343 QDKEASYFDPVWSP 356 +AS DP WSP Sbjct: 193 TPLDAS--DPAWSP 204 >gi|301513293|ref|ZP_07238530.1| translocation protein TolB [Acinetobacter baumannii AB058] Length = 258 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 120/261 (45%), Gaps = 8/261 (3%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + +L + D DG + + SRD I P ++P+ +K+AY +++ + +YL D Sbjct: 3 TPAERYTLQIADTDGEQPKTVLSSRDPI-LSPAWTPDAKKIAYVSFETKRPA-IYLQDLS 60 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + +F+ + AP FS +GK L + + +IY +DL + +R+TN I+ Sbjct: 61 TGT-REVLTSFKGLNGAPSFSPDGKSMLFTASMNGNPEIYQMDLSTRQVKRMTNDSGIDT 119 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 A Y+PD +F SDR G Q+Y KR++ + S G IA Sbjct: 120 EARYTPDGKAFIFTSDRGGSPQIYRYDFGNGSVKRLTFKGSFNARG-TLSADGKKIALVH 178 Query: 366 F-SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SG + + + + +L S ++P++SP+G+ ++++ ++ + + + Sbjct: 179 RPSGSNYKVAIQDINTGIVNILTPTSLDESPSFSPNGQMVVYATREGNRGLLSI--MSTD 236 Query: 425 GRNE-TLINTPAYASDPQWVG 444 GR L + +P W Sbjct: 237 GRFRMNLPSEQGEVREPAWAP 257 >gi|223938135|ref|ZP_03630032.1| WD40 domain protein beta Propeller [bacterium Ellin514] gi|223893179|gb|EEF59643.1| WD40 domain protein beta Propeller [bacterium Ellin514] Length = 392 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 98/433 (22%), Positives = 171/433 (39%), Gaps = 46/433 (10%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVA-TNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 MKIN + L ++ A V P I + I +V+ V++ Sbjct: 1 MKINFFKIAALALVLSAGTLFAEDHVIPIVKPGNEP-GITPPTPIVISGFSDEVAHVLNY 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL N+ P P +V+G + V+ +L Sbjct: 60 DLTVMGFTNV------------PSGTPNVP---------VVSGS------NNGNVQGQL- 91 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 + + K + AS R AH ++DD+ +T G ++RI F ++ ++ Sbjct: 92 -SYGKTVLFSKAYSG--ASTRSQAHRLADDVVLKLTSVNGIASTRIAFKVDTGA----QS 144 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + V D DG N + +T S + I+ P + P + + Y TY Y + Sbjct: 145 EIYVSDFDGHNPQAVT-SDNTIVASPCWFPGRLALCYLTYKLGPAKVFY--QNLATGERR 201 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + ++P S +GK + + K + D+Y +L + ++LT+T S +SP Sbjct: 202 NVAQYPGDGISPAVSKDGK-VAMVLSKSGSPDLYVCNLDGSGMKQLTHTREDESSPCFSP 260 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S + L + +G KRI ++ +P WSP G I FT + F Sbjct: 261 DGQWICFASKGGERRALSKVSVDGGSVKRIPTAGVSNPSEPDWSPDGKYIVFTSQNSRGF 320 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN--GRNET 429 I V+ +G +L E + P+W+P+ R+++F+R+K G+ L + Sbjct: 321 NICVVPAEGGTAIVLTEG---EDPSWAPNSRTVVFARRKGGNRVLSLLDVPTKQVKDVSR 377 Query: 430 LINTPAYASDPQW 442 + A S P W Sbjct: 378 VSGNSAGNSQPSW 390 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 7/178 (3%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R V +IY D + + +T+ I S + P + + + + G +++ Sbjct: 132 TRIAFKVDTGAQSEIYVSDFDGHNPQAVTSDNTIVASPCWFPGRLALCYLTYKLGPAKVF 191 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +++ ++Q P S G +A + V DGS + L Sbjct: 192 YQNLATGERRNVAQY-PGDGISPAVSKDGK-VAMVLSKSGSPDLYVCNLDGSGMKQLTHT 249 Query: 390 SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA--SDPQWVG 444 ++ P +SP G+ + F+ K G L + ++G + I T + S+P W Sbjct: 250 REDESSPCFSPDGQWICFASK--GGERRALSKVSVDGGSVKRIPTAGVSNPSEPDWSP 305 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 21/186 (11%) Query: 269 GKRALISVQKDEAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 GK L S A L + +LT+ I S++I F+ D + + Sbjct: 94 GKTVLFSKAYSGASTRSQAHRLADDVVLKLTSVNGIA--------STRIAFKVDTGAQSE 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +YV +G + + ++ D P W P + + + + + R + Sbjct: 146 IYVSDFDGHNPQAVTSD-NTIVASPCWFPGRLALCYLTYKLGPAKVFYQNLATGERRNVA 204 Query: 388 E-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASD 439 + + +P S G+ + K LY +L+G + +P ++ D Sbjct: 205 QYPGDGISPAVSKDGKVAMVLSKSG---SPDLYVCNLDGSGMKQLTHTREDESSPCFSPD 261 Query: 440 PQWVGF 445 QW+ F Sbjct: 262 GQWICF 267 >gi|220904131|ref|YP_002479443.1| WD40 domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868430|gb|ACL48765.1| WD40 domain protein beta Propeller [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 439 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 68/423 (16%), Positives = 170/423 (40%), Gaps = 21/423 (4%) Query: 32 IHAFVKVATNSANYSPVSIAFT-----KFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 A ++V + V++A V +G + ++V ++L L + Sbjct: 20 AQAAMRVDIYGPGQNIVNLALAAPLKGPQVQATGMGADLQKIVQENLSFLPFMRLTDPKA 79 Query: 87 FKQKITNPDSIP---RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK 143 + P F+ + G+ ++VT + V+ R ++ ++ GK+ Sbjct: 80 VLGGVVLAGYEPPTLDFKRFQLAGSDIVVTTFWPEGDSGTRPVQIRAFETNTGGRLFGKE 139 Query: 144 F-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + + ++A D+ +++TG F S + F+ ++ G + +++ ++ G + Sbjct: 140 YPKVNARDLPEVADRFCADLLEALTGNGAFFRSTLAFIKKN---GKMDSNVWLVKPTGRD 196 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 +R +T + P +SP+ + V + D + R +RI ++++ Sbjct: 197 LRQITNMPGE-SMSPAWSPDGRFVVFTQIDPKSHALGVW--DRSTGKVQRIRFPGNVVIG 253 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P F + + +++ + I+ ++ L IN+S ++ +++ F S R Sbjct: 254 PAFMPD-NKVAVALSNGKYPVIFQLNHVFQKERVLEQNDSINVSPTFDSTGTKMAFTSSR 312 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGS 381 G Q+++ R+S++ + + SP G L+ +++ + I V G+ Sbjct: 313 LGGPQIFLKDLGSGSVTRVSKNGTYN-SEANLSPDGTLVVYSRMTEYGHRIFVQDMLTGT 371 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDP 440 + ++ + + P++ + F+ + G G +Y +G + + T +S P Sbjct: 372 ERQISFGPGSDEQPSFCADSYFIAFTSSRGGGRG--IYLTTRHGGDAKRVPTGGGDSSFP 429 Query: 441 QWV 443 +W Sbjct: 430 RWG 432 >gi|303328322|ref|ZP_07358760.1| putative TolB protein [Desulfovibrio sp. 3_1_syn3] gi|302861652|gb|EFL84588.1| putative TolB protein [Desulfovibrio sp. 3_1_syn3] Length = 442 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 72/430 (16%), Positives = 171/430 (39%), Gaps = 21/430 (4%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFT-----KFVSIDELGGKVSEVVSKDLQRSDVF 79 G T A ++V + + V++A +G ++ +V ++L Sbjct: 17 GPLPGTRAEAAMRVDIMNPGQNIVNLALAAPLKGPQAQATGMGAELQTLVEQNLSFLPFM 76 Query: 80 NLISQDSFKQKITNPDSIP---RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 L + + P F+ + G+ ++VT V+ R ++ Sbjct: 77 RLTDPKAVLGGVVLAGYEPPALDFKRFQLAGSDIVVTTFWPDGDSGTKPVQIRAFETNTG 136 Query: 137 KQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++ GK++ + ++A D+ +++TG F S + FV ++ G + ++ + Sbjct: 137 GRLFGKEYPKVNKRDLPEVADRFCADLLEALTGNGAFFRSTLAFVKKT---GKMSANVWL 193 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + G ++R +T + P +SP+ + V ++ D + R +RI Sbjct: 194 VKPTGRDLRQITNIPGE-ALSPAWSPDGRFVVFSHIDPKSHALGVW--DRSTGKVQRIRF 250 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 ++++ P F + + +++ + I+ ++ L + IN+S ++ ++ Sbjct: 251 PGNVVIGPAFMPD-NKVAVALSNGKYPVIFLLNHVFQKERVLEQSNAINVSPTFDSTGTK 309 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F S R G Q+++ R+S++ + + SP G L+ +++ + I V Sbjct: 310 MAFTSSRLGGPQIFLKDLGSGSITRVSKNGTYN-TEANLSPDGTLVVYSRMTDFGHRIFV 368 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 ER + + + P++ + F+ ++G G +Y +G + + T Sbjct: 369 QDMLTGMERQITFGPGSDEQPSFCADSYFIAFASTRNGGRG--IYLTTRHGGDAKQVPTG 426 Query: 435 AY-ASDPQWV 443 AS P+W Sbjct: 427 GGAASFPRWG 436 >gi|242279944|ref|YP_002992073.1| hypothetical protein Desal_2478 [Desulfovibrio salexigens DSM 2638] gi|242122838|gb|ACS80534.1| WD40 domain protein beta Propeller [Desulfovibrio salexigens DSM 2638] Length = 457 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 81/434 (18%), Positives = 153/434 (35%), Gaps = 34/434 (7%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSIDEL---------------GGKVSEVVSKDLQRS 76 + V V+I ++ G S+ ++KDL Sbjct: 31 AADTLTVDIYGPGQRKVNIILLPPKTVPAGKYEGSKEKDLPLPAEAGSFSKDLAKDLAFL 90 Query: 77 DVFNLISQDSF----KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 N++ + P I + + VT + R Sbjct: 91 PFLNIVPVTDILGGDPSRGVRPGDI-DIKPLRLSKVDLAVTTGWEIRPNGEKNLLIRCIG 149 Query: 133 VKDRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 + + I+GKK+ + +IA S + + +TG G F S I FV ++ Sbjct: 150 TFNGRTILGKKYSMVTEEMLPRIADRFSSHLMRILTGRDGFFESSIAFVRKTGKD----K 205 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G N+R ++ S I P +S + ++ + L R Sbjct: 206 EIYTVSPQGRNLRQIS-SLGGINLSPNWSHDGNRLVFTRLGSRQHLLCVW--DRATGKID 262 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + ++ P F +G A ++ + DI+ ++ + L + I +S + Sbjct: 263 QKSFPGNTVIGPEFLPDGNMAA-TLTMNGNSDIFLINGNYKPKKALAKSWAIEVSPDFDR 321 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 ++VF S R G ++++ RI+ + + + +P SP G +AF++ + Sbjct: 322 TGEKMVFTSARFGNPHIFLLDMKSGVVTRITTEGKYN-TNPTISPDGRYVAFSRQTPLGH 380 Query: 372 AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 I V QER L N + P + P G + FS ++G K+Y +G L Sbjct: 381 RIFVHDLKTGQERQLTFGPGNDEDPAFGPDGYFIAFSSSRNGK--YKIYLTTRHGDPAML 438 Query: 431 INT-PAYASDPQWV 443 + T A P W Sbjct: 439 VPTGNGVAKAPAWG 452 >gi|163796374|ref|ZP_02190335.1| Periplasmic component of the Tol biopolymer transport system [alpha proteobacterium BAL199] gi|159178516|gb|EDP63058.1| Periplasmic component of the Tol biopolymer transport system [alpha proteobacterium BAL199] Length = 228 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 77/210 (36%), Positives = 117/210 (55%), Gaps = 5/210 (2%) Query: 26 GFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDVFNL 81 G F A +++ P+ +A F +G +++ ++ DL+RS +F Sbjct: 20 GGFAKPAAAELRIDITQGRVEPLPVAIADFKGEGIEPTRIGREIAGIIRADLERSGLFKP 79 Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 I Q++F Q D +PRF DW + AQ LV GRV + G+ ++RVEFRLWDV + + G Sbjct: 80 IDQNAFIQTDLQFDVVPRFGDWRLINAQALVHGRVTEIGQGQVRVEFRLWDVFAEQYMTG 139 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 P S R+ AH I+D IY+ +TGE G F+SRI++++ES K L +MD+DGA Sbjct: 140 TTLTVIPESLRRAAHIIADLIYKRLTGEDGYFDSRIVYIAESGAQNRRKKQLAIMDQDGA 199 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 N ++LT ++ PRFSP Q++ Y Y Sbjct: 200 NHKFLTDGG-TLVLTPRFSPTHQEITYLAY 228 >gi|257455248|ref|ZP_05620483.1| putative TolB periplasmic receptor [Enhydrobacter aerosaccus SK60] gi|257447210|gb|EEV22218.1| putative TolB periplasmic receptor [Enhydrobacter aerosaccus SK60] Length = 436 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 91/450 (20%), Positives = 168/450 (37%), Gaps = 40/450 (8%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSP---VSIAFTKFVSIDELGGKVSE 67 +N ++ L+ P +A V +P + IA F +S Sbjct: 1 MNKTFFKAAIIALVTTAVPPLANAADNVDFTLVKQAPRSNLQIAIVPFAG----AESISG 56 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 +V+ DL F L + ++ + + W LV G + + + + Sbjct: 57 IVTNDLTNLGQFTL--DSNLPERPHSSSEV-TLPVWQHKAVPYLVVGN-TRSNRGNVEIN 112 Query: 128 FRLWDVKDRKQIIGKKFFSSPA---SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 F + +V + + G + +S S R H ++D IY+ +TG KGDF+ RI +V E+ Sbjct: 113 FEVINVATGEVMQGLQTVTSKNNSQSLRMAGHKVADRIYEILTGIKGDFSGRIAYVVETG 172 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L + D DG N + + I S + Q + D + Sbjct: 173 KPKNRVSRLVISDVDGFNPKVIYEFNGTIKTLNT-SADNQTFTFQVQPDTLGYPQVMSAN 231 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + A + NF++M S +G+ S ++ IY Q + RLTN Sbjct: 232 IVSGAVSNLTNFKAMNYGASVSKDGRVIFSSSFENGIPQIYL--AQGGNSRRLTNDPVGA 289 Query: 305 ISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I S++PD V+ SDR K Q+Y+ ++R++ +S S G Sbjct: 290 IYPSWAPDGQSFVYTSDRAGGKKGGNKGQIYLYNLATGSEQRLTGGGLSSMG--RISNDG 347 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +++ + + VM + +AP SP+G+ I+S + Sbjct: 348 KKMSYLSGANQG---AVMDLGSRSVTAVNNVGLSEAPGVSPNGQHYIYS-------NKNV 397 Query: 419 YSIDLNGRNETLINTPAYASD-----PQWV 443 +I NG++ ++ + + P W+ Sbjct: 398 ITIVSNGKSISISPSQNGVPNGLIYGPLWL 427 >gi|332704880|ref|ZP_08424968.1| WD40-like beta Propeller containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332555029|gb|EGJ52073.1| WD40-like beta Propeller containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 440 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 71/427 (16%), Positives = 156/427 (36%), Gaps = 24/427 (5%) Query: 29 PTSIHAFVKVATNSANYSPV------SIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLI 82 + + + + T + + + + +L+ + Sbjct: 20 TVQAQGKLSIDIFGPGQTKTNLMVAQPLPATNGQPLPRMAADMQAQIRDNLRFLPFLRQV 79 Query: 83 SQDSFKQ--KITNPDSI-PRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + ++ P + F+ + +L T + V FR+++ + Sbjct: 80 ASTEVIGGDRVEAPKAPGIDFKRFQLSRVDLLTTSAWTPGADGKASVAFRVYETFTGTML 139 Query: 140 IGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 G+++ P IA + + + +TG G F SR+ FV + V Sbjct: 140 FGQEYADIKPVHMPDIADSFCSRLMEVLTGRVGFFQSRLAFV----RKDQSGKEIWVAGP 195 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 G N R +T S + P +S + +++ + + M + + S Sbjct: 196 TGYNARKIT-SLGGVNTSPAWSLDGKRLLFTHVA--KTQHMLGMADMDTGKVQTVDLPGS 252 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIV 317 +++P + +G R +++ + +IY + T L + I++S S+ ++ Sbjct: 253 SVISPTYMPDG-RLAVTLDIEGQPNIYLLGRDWKPTGTPLAKSWSIDVSPSFDRAGRKMA 311 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F S R G ++V+ +R++ + + + +P SP G+ +AF++ + I V+ Sbjct: 312 FVSGRLGNPHIFVLDIPTGKVQRVTYEGKYN-TNPTMSPDGNFVAFSRDTDVGHRIFVID 370 Query: 378 KDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-A 435 ER + + P++ P G + FS + G KLY +G ++ T Sbjct: 371 LRTGLERQVTFGPGFDEEPSFGPEGYFIAFSSSRSG--IYKLYLTTRHGDEPVMLQTGSG 428 Query: 436 YASDPQW 442 A P W Sbjct: 429 EARAPSW 435 >gi|281357813|ref|ZP_06244299.1| Periplasmic component of the Tol biopolymer transport system-like protein [Victivallis vadensis ATCC BAA-548] gi|281315760|gb|EFA99787.1| Periplasmic component of the Tol biopolymer transport system-like protein [Victivallis vadensis ATCC BAA-548] Length = 404 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 154/387 (39%), Gaps = 44/387 (11%) Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 V + V+ L+ F+++ AQ + G DR+ Sbjct: 51 VGQEVNNFLRACGWFDVVP---------------------DPKAQFQLAGS---RDGDRI 86 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE---KGDFNSRILFVS 181 R +D+ +G + S R IA + + I + + KG SRI F + Sbjct: 87 R-----FDLTQGGAPVGSWQAGAAGSDRAIAKNVVNAIIEKTFKDLKVKGFCASRIAFCA 141 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++ ++ V D DG N+ +T + + EP + P+ + + Y+ Y I V Sbjct: 142 QTAPG---VRNIYVCDIDGGNVEQITRF-NTLCVEPCWFPDGRSIGYSKYGRTGIDVV-- 195 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 T R + + FR + S +G++ + + D +D+Y + + S RLT + Sbjct: 196 QTTLNPRRSRVLSAFRGINAGAAISPDGRQLAVILSPDHQVDLYVMPVGSTRLTRLTRNI 255 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRI-SQDKEASYFDPVWSPQGD 359 + S +SPD SQ+ + SD G ++Y + +GS +KR+ P WS G Sbjct: 256 AVEASPCWSPDGSQLAYVSDETGSPRIYTVTVHDGSGRKRLPVIPGGRDAVTPDWSKDGK 315 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I + + I V + + E N ++P W+ R ++ R DG S L Sbjct: 316 -IVYATKVNGNYTIAVYDTKTGENKRATEAPGNWESPAWAADNRQVVCKR-ADGSGKSAL 373 Query: 419 YSIDL-NGRNETLINTPAYASDPQWVG 444 Y +D G+ L+ TP S P W Sbjct: 374 YVVDTWTGKTRLLVATPYNLSMPVWSP 400 >gi|121591680|ref|ZP_01678914.1| tolB protein [Vibrio cholerae 2740-80] gi|121546465|gb|EAX56689.1| tolB protein [Vibrio cholerae 2740-80] Length = 265 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 28/270 (10%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L +L+LIG F +A +++ + P++I K+ +L VS V++ Sbjct: 1 MFKRLVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ + Q + + + F W S+G L+TG + + + + ++L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQV-NFGKWTSMGVDSLLTGTITQNAEGSYVISYQL 119 Query: 131 WDVKDRK---------------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + K + R+ AH I+D +Y+ +TGE Sbjct: 120 VDIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G F +RI +V + L + D DG N R + S+ Q L P +SP+ Q +AY Sbjct: 180 RGAFLTRIAYVVVN-DKDPYPYQLRIADYDGYNERLVLRSK-QPLMSPAWSPDGQTLAYV 237 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 ++ + +Y+M+ + +++ +F Sbjct: 238 SFQNGQA-EIYMMNIYSGK-REKLTSFPRH 265 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 359 DLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDT 414 IA+ + + + + + DG ERL++ L +P WSP G++L + ++G Sbjct: 185 TRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQ- 243 Query: 415 GSKLYSIDL-NGRNETLINTPAY 436 +++Y +++ +G+ E L + P + Sbjct: 244 -AEIYMMNIYSGKREKLTSFPRH 265 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 QL + +G +++ + + K+ P WSP G +A+ F + I +M + Sbjct: 200 YQLRIADYDGYNERLVLRSKQ-PLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREK 258 Query: 386 LVE 388 L Sbjct: 259 LTS 261 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 270 KRALISVQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 R V D+ Y + D + + +S ++SPD + + S + G+ Sbjct: 185 TRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQA 244 Query: 327 QLYVMQSNGSDQKRISQDKEA 347 ++Y+M +++++ Sbjct: 245 EIYMMNIYSGKREKLTSFPRH 265 >gi|153877364|ref|ZP_02004199.1| translocation protein TolB precursor [Beggiatoa sp. PS] gi|152066172|gb|EDN65801.1| translocation protein TolB precursor [Beggiatoa sp. PS] Length = 216 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 10/213 (4%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + VY+ + R R+ + AP +S +GKR ++ +D +IY ++L S Sbjct: 12 KRMVVYIQEIGTGR-RTRVSAKPGLNAAPAWSPDGKRLAFTLSQDGNPEIYVMNLYSRGL 70 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 +RLTN I+ ++ D IVF SDR G+ Q+Y + NG +R++ + P Sbjct: 71 KRLTNHQAIDTEPEWASDGRTIVFTSDRSGQPQIYRISVNGGKAQRLTFHGSYNAR-PRL 129 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G +A SG + I V+ Q ++L + + ++P+++P+G +I++ T Sbjct: 130 SPDGSQLAVLHSSGRGYKIAVITLKTGQMKVLSQTTLDESPSFAPNGSMIIYA------T 183 Query: 415 GSKLYSIDLNGRNETL--INTPAYASDPQWVGF 445 GS+L ++ ++GR ++ A +P W F Sbjct: 184 GSELAAVSVDGRVRQRLSVDMNAQVREPAWSPF 216 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 11/216 (5%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 G + + + + G R ++ + P +SP+ +++A+ D + +Y+M+ Sbjct: 9 KGAKRMVVYIQEI-GTGRRTRVSAKPGLNAAPAWSPDGKRLAFTLSQDGNP-EIYVMNL- 65 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R KR+ N +++ P ++S+G+ + + + IY + + +RLT N Sbjct: 66 YSRGLKRLTNHQAIDTEPEWASDGRTIVFTSDRSGQPQIYRISVNGGKAQRLTFHGSYNA 125 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SPD SQ+ ++ V+ K +SQ P ++P G +I + Sbjct: 126 RPRLSPDGSQLAVLHSSGRGYKIAVITLKTGQMKVLSQTT--LDESPSFAPNGSMIIYAT 183 Query: 366 FSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSP 399 S + + DG + L D + ++ P WSP Sbjct: 184 GS----ELAAVSVDGRVRQRLSVDMNAQVREPAWSP 215 >gi|218679309|ref|ZP_03527206.1| translocation protein TolB [Rhizobium etli CIAT 894] Length = 196 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 ++ + + + + +A V++ N N P+ IA T F ++G +VS+V++ D Sbjct: 14 IRALVVAVGMTAAAVVSSPANARVEININKGNIQPLPIAVTDFQG--DMGAQVSQVIAAD 71 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQRS +F I++ +F +KI+NPD+ PRF+DW + AQ LVTGRV KE RLR EFRLWD Sbjct: 72 LQRSGLFAPINKTAFIEKISNPDASPRFEDWKVINAQALVTGRVTKEADGRLRAEFRLWD 131 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 +Q+ G++F++ P +WR++AH I+D IY+ ITGE+G F++R++FVSES K Sbjct: 132 TFAGQQMAGQQFYTQPENWRRVAHIIADAIYKQITGEEGYFDTRVVFVSESGTKQQRKRQ 191 Query: 193 LCVMD 197 L +MD Sbjct: 192 LAIMD 196 >gi|29840730|ref|NP_829836.1| translocation protein TolB [Chlamydophila caviae GPIC] gi|32699690|sp|Q821G5|TOLB_CHLCV RecName: Full=Protein tolB; Flags: Precursor gi|29835080|gb|AAP05714.1| conserved domain protein [Chlamydophila caviae GPIC] Length = 427 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 125/324 (38%), Gaps = 14/324 (4%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNS 192 + +Q +S R+ H +D I+ ++T G + +I+F + Sbjct: 105 NHQQFHSLVLTEDISSNRQKIHEAADKIHYALTKVPGISSGKIVFSLSKNPQDGELKQGE 164 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +D DGAN+R LT + P + Y + + + + + K+ Sbjct: 165 LWSVDYDGANLRALTQENS-LSITPNWMNIGNCNPYLYVSYKYGIPKIFLGSLENTTGKK 223 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ------SNATERLTNTLFINIS 306 + N + P FS K D++ L T + Sbjct: 224 VLNLQGNQFMPTFSPRKKLLAFISDTYGNPDLFLQSFSLSKGVMGKPRRVLNETFGTQGN 283 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S+SPD S++VF S+R+G+ +LY++Q + R+ K + P WSP G IAF Sbjct: 284 PSFSPDGSKLVFVSNRDGRPRLYIIQIDPEIQTPRLLTKKYRNSSCPSWSPDGKKIAFCS 343 Query: 366 FSGEKFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL- 423 I + G +L + + P+W+ + L++S G+ S+LY + L Sbjct: 344 VIKGVRQICLYDLSTGKDYQLTTTPIDKEGPSWAIDSQHLVYSAGNSGE--SELYLLSLI 401 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 + + ++ P W GF + Sbjct: 402 TQKTKKIVIGLGEKRFPSWGGFPN 425 >gi|329943315|ref|ZP_08292089.1| WD40-like Beta Propeller Repeat family protein [Chlamydophila psittaci Cal10] gi|332287891|ref|YP_004422792.1| putative translocation protein tolB [Chlamydophila psittaci 6BC] gi|313848463|emb|CBY17467.1| putative TolB protein [Chlamydophila psittaci RD1] gi|325506662|gb|ADZ18300.1| putative translocation protein tolB [Chlamydophila psittaci 6BC] gi|328814862|gb|EGF84852.1| WD40-like Beta Propeller Repeat family protein [Chlamydophila psittaci Cal10] gi|328915155|gb|AEB55988.1| tolB protein, putative [Chlamydophila psittaci 6BC] Length = 427 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 126/326 (38%), Gaps = 14/326 (4%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IK 190 ++ + + AS R+ H +D I+ ++T G + +I+F + Sbjct: 103 TQNYQPMHSLVLTEDNASNRQKIHEAADKIHYALTSVPGISSGKIIFSLSKNPKDSELKQ 162 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L +D DG N+R LT + P + K Y + + + + + Sbjct: 163 GELWSVDYDGGNLRPLTQENS-LSITPNWMNIGSKNPYLYVSYKFGIPKIFLGSLENTTG 221 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ------SNATERLTNTLFIN 304 K++ + + P FS K D++ L T Sbjct: 222 KKVLHLQGNQFMPAFSPKKKLLAFISDSYGNPDLFLQSFSLSKGAMGKPRRVLNETFGTQ 281 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAF 363 + S+SPD S++VF S+++G+ +LY++Q + R+ K + P WSP G IAF Sbjct: 282 GNPSFSPDGSKLVFVSNKDGRPRLYILQIDPEIQSPRLLTKKYRNSSCPSWSPDGKKIAF 341 Query: 364 TKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + G +L + + P+W+ + L++S G+ S+LY + Sbjct: 342 CSVIKGVRQICLYDLATGKDYQLTTTPVDKEGPSWAVDSQHLVYSAGNSGE--SELYLLS 399 Query: 423 L-NGRNETLINTPAYASDPQWVGFMD 447 L + + ++ P W GF D Sbjct: 400 LITQKTKKIVIGLGEKRFPSWGGFPD 425 >gi|327399145|ref|YP_004340014.1| WD40-like beta Propeller containing protein [Hippea maritima DSM 10411] gi|327181774|gb|AEA33955.1| WD40-like beta Propeller containing protein [Hippea maritima DSM 10411] Length = 421 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 86/414 (20%), Positives = 178/414 (42%), Gaps = 21/414 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVS 70 MK + L ++ F K+ ++ Y P++I FV + + + + Sbjct: 1 MKRFVVFLAFIVFIGLNAQADTF-KIEISNPKYKPINIGLWGFVKNTPTSISKRFLSTLK 59 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +DL+ S +F+ F P + ++ G EGK V R+ Sbjct: 60 RDLKVSGLFSWDETQHFSYD--APSKVVNGIA-KLDNLDYVIYGDAYIEGKSIY-VNVRI 115 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 DV + K + ++ S +A+ + D + +TG G F S+I F Sbjct: 116 TDVLKNSVLFEKTYTTNEYSLGWLANRVVDVLIGYVTGVYGPFESKIAFAL----GDGRV 171 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + + V D +G N+ +T + + P++ + ++ + +Y ++L + + Sbjct: 172 SDIYVCDFNGENVVRITNWHNFNIL-PKWVSD-DELTFLSYRYGKPA-LFLFNVFSGKLS 228 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 K N I A R+ I + +++IY+V+ + ++LTN IN+S +++ Sbjct: 229 KLFSNSNLSISASRYM---GYFAIPFNRFGSVNIYAVNARGRVIKKLTNDPSINVSPTFT 285 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD S++VF S+R G Q+Y+ + D R++ + + + P SP G IA+ Sbjct: 286 PDFSKMVFVSNRGGNPQIYIKDLSSFDSPVRLTFNGKYN-SSPAVSPDGKKIAYISIDNG 344 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + VM DGS +R++++ ++L +P+W+ R + + + ++ ++ Sbjct: 345 TTYLKVMNIDGSNDRVVMKGNSLDSPSWAYDSRFVALTGRVGNKNA--IFVVNT 396 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 3/145 (2%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + ++ G I+ LT I P F+P+ K+ + + + ++Y+ D +P R Sbjct: 259 IYAVNARGRVIKKLTNDPS-INVSPTFTPDFSKMVFVSNRGGNP-QIYIKDLSSFDSPVR 316 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +P S +GK+ + + +++ + + ++ S S++ D Sbjct: 317 LTFNGKYNSSPAVSPDGKKIAYISIDNGTTYLKVMNIDGSNDRVVMKGNSLD-SPSWAYD 375 Query: 313 SSQIVFESDREGKEQLYVMQSNGSD 337 S + K ++V+ + + Sbjct: 376 SRFVALTGRVGNKNAIFVVNTINGN 400 >gi|255311420|ref|ZP_05353990.1| translocation protein TolB [Chlamydia trachomatis 6276] gi|255317721|ref|ZP_05358967.1| translocation protein TolB [Chlamydia trachomatis 6276s] Length = 431 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 14/323 (4%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 103 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + P + AY + + ++T A K Sbjct: 163 ELWSVDYDGQHLYPLTNEHS-LSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 221 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQSNA---TERLTNTL-FINI 305 +I + P FS K +D D++ L + A ++L N Sbjct: 222 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 281 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ + R+ K + P WSP G IAF Sbjct: 282 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLTKKYRNSSCPTWSPDGKKIAFC 341 Query: 365 KFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I V G E+L + ++P+W+ L++S S+L+ + L Sbjct: 342 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYSA--GSSNTSELFLLSL 399 Query: 424 -NGRNETLINTPAYASDPQWVGF 445 ++ ++ P W F Sbjct: 400 ITKKSRKIVIGSGEKRFPCWGAF 422 >gi|15835502|ref|NP_297261.1| translocation protein TolB [Chlamydia muridarum Nigg] gi|270285685|ref|ZP_06195079.1| translocation protein TolB [Chlamydia muridarum Nigg] gi|270289693|ref|ZP_06195995.1| translocation protein TolB [Chlamydia muridarum Weiss] gi|301337080|ref|ZP_07225282.1| translocation protein TolB [Chlamydia muridarum MopnTet14] gi|14195252|sp|Q9PJE1|TOLB_CHLMU RecName: Full=Protein tolB; Flags: Precursor gi|7190916|gb|AAF39683.1| tolB protein, putative [Chlamydia muridarum Nigg] Length = 426 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 169/449 (37%), Gaps = 46/449 (10%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAF---TKFVSIDELGGKVSE 67 + ++ LCLL +L + + V+ ++ PV+++ K + + Sbjct: 1 MFLRSFLCLLCLLPSILYCADLEIHVRAESS---LLPVNVSLLSSPKDTKQGSYLASLRD 57 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 + ++DL D+ ++ + S P + + K+GK Sbjct: 58 LFARDLALGDLLAPT-KEIAPLTVFIEASYPE------------LIFSIKKDGKG----- 99 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVV 185 ++I + +P+ + H +D I+ +T G + +I+F S + Sbjct: 100 --------AQKIFSLELSGNPSKDHQSIHEAADRIHFLLTHTPGISSGKIIFSLCSTNSS 151 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + L +D DG ++ LT + P + AY + + ++T Sbjct: 152 EELKQGELWSVDYDGQHLAPLTNEHS-LSVTPAWMHISHIPAYIYVSYKLGVPKIFLNTL 210 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQSNA---TERLTNT 300 K+I + P FS K +D D++ L + A ++L N Sbjct: 211 SQPTGKKILAMQGNQFMPAFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNE 270 Query: 301 L-FINISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQG 358 + S+SPD +++VF S+++G ++Y MQ R+ K + P WSP G Sbjct: 271 AFGTQGNPSFSPDGTRLVFVSNKDGTPRIYQMQIYPEQHPPRLLTKKYRNSSCPTWSPDG 330 Query: 359 DLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 IAF I V G E+L + ++P+W+ L++S + S+ Sbjct: 331 KKIAFCSVIKGVRQICVYDLASGRDEQLTTSAEHKESPSWAADSNHLVYSA--GSSSTSE 388 Query: 418 LYSIDL-NGRNETLINTPAYASDPQWVGF 445 L+ + L ++ ++ P W F Sbjct: 389 LFLLSLITKKSRKIVIGSGEKRFPCWGAF 417 >gi|297748729|gb|ADI51275.1| Tolb [Chlamydia trachomatis D-EC] gi|297749609|gb|ADI52287.1| Tolb [Chlamydia trachomatis D-LC] Length = 432 Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 14/323 (4%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 104 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 163 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + P + AY + + ++T A K Sbjct: 164 ELWSVDYDGQHLYPLTNEHS-LSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 222 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQSNA---TERLTNTL-FINI 305 +I + P FS K +D D++ L + A ++L N Sbjct: 223 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 282 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ + R+ K + P WSP G IAF Sbjct: 283 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLTKKYRNSSCPTWSPDGKKIAFC 342 Query: 365 KFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I V G E+L + ++P+W+ L++S S+L+ + L Sbjct: 343 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYSA--GSSNTSELFLLSL 400 Query: 424 -NGRNETLINTPAYASDPQWVGF 445 ++ ++ P W F Sbjct: 401 ITKKSRKIVIGSGEKRFPCWGAF 423 >gi|268326068|emb|CBH39656.1| conserved hypothetical secreted protein, containing WD40-like beta propeller repeats [uncultured archaeon] gi|268326194|emb|CBH39782.1| conserved hypothetical secreted protein, containing WD40-like beta propeller repeats [uncultured archaeon] Length = 303 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 12/274 (4%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 RI F S + N + VMD DG N+ LT P + P K+A+ + D Sbjct: 33 TGRIAFTSNMDGN----NEIYVMDADGTNVTRLTNDIAN-DINPEWHPKGCKIAFTSDRD 87 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 D L +YLMD ++ N +S NG R S +D +IY +D + Sbjct: 88 GD-LEIYLMDVD-GTNITQLTNNTVADGCQCWSPNGSRIAFSSDRDGDPEIYVMDAEGTN 145 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 RLT+ ++I+ +SPD S+I F S R G ++YVM NG+++++++ + + Sbjct: 146 VTRLTDNTCLDINPHWSPDGSKIAFSSGRVGDTEIYVMDVNGANKEQLTDNNKW-DSPGE 204 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKD 411 W+ + + F+ F + +M DG++ L ++ +P W+ G ++F + Sbjct: 205 WASDSNKLLFSSDRDGDFEVYLMDADGTKVTQLTNNAEYQEGSPAWALGGEKIVFVAGRY 264 Query: 412 GDTGSKLYSIDLNGRNETLINTP-AYASDPQWVG 444 ++Y +D +G N T + T A SDP W Sbjct: 265 -KGDFEIYMMDSDGTNITQMTTNFADESDPVWAP 297 >gi|15605329|ref|NP_220115.1| translocation protein TolB [Chlamydia trachomatis D/UW-3/CX] gi|76789337|ref|YP_328423.1| translocation protein TolB [Chlamydia trachomatis A/HAR-13] gi|166154813|ref|YP_001654931.1| translocation protein TolB [Chlamydia trachomatis 434/Bu] gi|166155688|ref|YP_001653943.1| translocation protein TolB [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237803027|ref|YP_002888221.1| translocation protein TolB [Chlamydia trachomatis B/Jali20/OT] gi|237804948|ref|YP_002889102.1| translocation protein TolB [Chlamydia trachomatis B/TZ1A828/OT] gi|301336091|ref|ZP_07224335.1| translocation protein TolB [Chlamydia trachomatis L2tet1] gi|6647882|sp|O84604|TOLB_CHLTR RecName: Full=Protein tolB; Flags: Precursor gi|119371040|sp|Q3KL97|TOLB_CHLTA RecName: Full=Protein tolB; Flags: Precursor gi|226705873|sp|B0B8H3|TOLB_CHLT2 RecName: Full=Protein tolB; Flags: Precursor gi|226705874|sp|B0BA52|TOLB_CHLTB RecName: Full=Protein tolB; Flags: Precursor gi|3329043|gb|AAC68201.1| component of a macromolecule transport system [Chlamydia trachomatis D/UW-3/CX] gi|76167867|gb|AAX50875.1| TolB [Chlamydia trachomatis A/HAR-13] gi|165930801|emb|CAP04299.1| outer membrane component of membrane transport system [Chlamydia trachomatis 434/Bu] gi|165931676|emb|CAP07253.1| outer membrane component of membrane transport system [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273248|emb|CAX10163.1| outer membrane component of membrane transport system [Chlamydia trachomatis B/TZ1A828/OT] gi|231274261|emb|CAX11056.1| outer membrane component of membrane transport system [Chlamydia trachomatis B/Jali20/OT] gi|296436134|gb|ADH18308.1| translocation protein TolB [Chlamydia trachomatis G/9768] gi|296437062|gb|ADH19232.1| translocation protein TolB [Chlamydia trachomatis G/11222] gi|296437994|gb|ADH20155.1| translocation protein TolB [Chlamydia trachomatis G/11074] gi|297140496|gb|ADH97254.1| translocation protein TolB [Chlamydia trachomatis G/9301] Length = 431 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 14/323 (4%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 103 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + P + AY + + ++T A K Sbjct: 163 ELWSVDYDGQHLYPLTNEHS-LSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 221 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQSNA---TERLTNTL-FINI 305 +I + P FS K +D D++ L + A ++L N Sbjct: 222 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 281 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ + R+ K + P WSP G IAF Sbjct: 282 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLTKKYRNSSCPTWSPDGKKIAFC 341 Query: 365 KFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I V G E+L + ++P+W+ L++S S+L+ + L Sbjct: 342 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYSA--GSSNTSELFLLSL 399 Query: 424 -NGRNETLINTPAYASDPQWVGF 445 ++ ++ P W F Sbjct: 400 ITKKSRKIVIGSGEKRFPCWGAF 422 >gi|167470904|ref|ZP_02335608.1| Tol-Pal system beta propeller repeat protein TolB [Yersinia pestis FV-1] Length = 225 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 14/233 (6%) Query: 7 IAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGK 64 + + + + +L + + +HA V++ + P+ + K++ + Sbjct: 1 MKQAFRVALGFLVL-------WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEE 53 Query: 65 VSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + +V DL+ S FN I Q+ + + W +LG +V G+V Sbjct: 54 IGAIVGADLRNSGKFNPIDAARMPQQPSTAAEV-TPAAWTALGIDAVVVGQVQPSADGSY 112 Query: 125 RVEFRLWDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 V ++L D + ++ + R AHT+SD++++ +TG KG F +RI +V + Sbjct: 113 VVSYQLVDTSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVK 172 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 + G + L V D DG N +++ + L P +SP+ K+AY T++ Sbjct: 173 TN-GGKFPHELRVSDYDGYN-QFVVHRSPEPLMSPAWSPDGSKIAYVTFESGK 223 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 359 DLIAFT-KFSGEKF--AIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDT 414 IA+ K +G KF + V DG + ++ L +P WSP G + + + G + Sbjct: 165 TRIAYVVKTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKS 224 Query: 415 G 415 Sbjct: 225 A 225 >gi|295841255|dbj|BAJ07029.1| WD40-like beta propeller protein [uncultured bacterium] Length = 328 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 25/286 (8%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R+ F S ++ + ++ DG + LT ++ L +P +SP+ + +AY D+E Sbjct: 52 GRLAFASYRDG----ESEIYSVNADGTALTRLTHDEER-LSKPAWSPDGKSIAYVVTDEE 106 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD----------- 283 + +YLM P R+ R + P + G + S +D ++ Sbjct: 107 FNVDIYLMKAD-GSNPARLTTDRWVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVY 165 Query: 284 ---IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 IY +D + LT++ + + ++SPD QI F+S R+ ++Y+M ++GS Q Sbjct: 166 EFEIYVMDANGSGQTNLTDSPGWDTAPAWSPDGGQIAFQSSRDENPEIYMMDADGSRQVN 225 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSP 399 ++ E P WSP G AF F I VM+ DG+ L + P W+P Sbjct: 226 LTNHPE-DDAAPAWSPDGSKTAFHSDRTGVFNIYVMETDGTGLVQLTSSPDWDIQPAWAP 284 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 G+ + F ++G+ ++Y ++ +G + + + P W Sbjct: 285 DGQHIAFYSGQEGNF--EIYVMNADGSCQMRLTYHGDFDGFPDWRP 328 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 K ++ ++ V + +M DG+N LT R + EP + P + ++ Sbjct: 88 KPAWSPDGKSIAYVVTDEEFNVDIYLMKADGSNPARLTTDR-WVDTEPAWDPTGGSIVFS 146 Query: 230 TYDDEDI-------------LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + D + +Y+MD + + AP +S +G + Sbjct: 147 SDRDSYLNIEDGKTYEMVYEFEIYVMDANGSGQT-NLTDSPGWDTAPAWSPDGGQIAFQS 205 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +DE +IY +D + LTN + + ++SPD S+ F SDR G +YVM+++G+ Sbjct: 206 SRDENPEIYMMDADGSRQVNLTNHPEDDAAPAWSPDGSKTAFHSDRTGVFNIYVMETDGT 265 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAP 395 +++ + P W+P G IAF F I VM DGS Q RL P Sbjct: 266 GLVQLTSSPDW-DIQPAWAPDGQHIAFYSGQEGNFEIYVMNADGSCQMRLTYHGDFDGFP 324 Query: 396 TWSP 399 W P Sbjct: 325 DWRP 328 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 22/243 (9%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S Q ++A+A+Y D + +Y ++ A R+ + + P +S +GK V Sbjct: 47 CSNRQGRLAFASYRDGES-EIYSVNAD-GTALTRLTHDEERLSKPAWSPDGKSIAYVVTD 104 Query: 279 DE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK------------ 325 +E +DIY + + RLT +++ ++ P IVF SDR+ Sbjct: 105 EEFNVDIYLMKADGSNPARLTTDRWVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMV 164 Query: 326 --EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 ++YVM +NGS Q ++ D P WSP G IAF E I +M DGS++ Sbjct: 165 YEFEIYVMDANGSGQTNLT-DSPGWDTAPAWSPDGGQIAFQSSRDENPEIYMMDADGSRQ 223 Query: 384 RLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQ 441 L + AP WSP G F + G +Y ++ +G L ++P + P Sbjct: 224 VNLTNHPEDDAAPAWSPDGSKTAFHSDRTG--VFNIYVMETDGTGLVQLTSSPDWDIQPA 281 Query: 442 WVG 444 W Sbjct: 282 WAP 284 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NL 392 + + + A +P + QG +AF + + I + DG+ L D L Sbjct: 28 STTALPEVGNGTPAEGANPCSNRQGR-LAFASYRDGESEIYSVNADGTALTRLTHDEERL 86 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQWVG 444 P WSP G+S+ + D + +Y + +G N + T + ++P W Sbjct: 87 SKPAWSPDGKSIAYVVT-DEEFNVDIYLMKADGSNPARLTTDRWVDTEPAWDP 138 >gi|255348980|ref|ZP_05380987.1| translocation protein TolB [Chlamydia trachomatis 70] gi|255503519|ref|ZP_05381909.1| translocation protein TolB [Chlamydia trachomatis 70s] gi|255507197|ref|ZP_05382836.1| translocation protein TolB [Chlamydia trachomatis D(s)2923] gi|289525641|emb|CBJ15122.1| outer membrane component of membrane transport system [Chlamydia trachomatis Sweden2] gi|296435205|gb|ADH17383.1| translocation protein TolB [Chlamydia trachomatis E/150] gi|296438924|gb|ADH21077.1| translocation protein TolB [Chlamydia trachomatis E/11023] Length = 431 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 14/323 (4%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKN 191 K ++I + P+ + H +D I+ +T G + +I+F + + + + + Sbjct: 103 KGSQKIFSLELSGDPSKDHQAIHEAADRIHFLLTRVPGISSGKIIFSLCATNSSTELKQG 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D DG ++ LT + P + AY + + ++T A K Sbjct: 163 ELWSVDYDGQHLYPLTNEHS-LSVTPTWMHISHIPAYMYVSYKLGVPKIFLNTLNQPAGK 221 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQSNA---TERLTNTL-FINI 305 +I + P FS K +D D++ L + A ++L N Sbjct: 222 KILAMQGNQFMPTFSPKTKLLAFISDRDGNPDLFVQSFSLATGAIGTPKKLLNEAFGTQG 281 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFT 364 + S+SPD +++VF S+++G ++Y MQ + R+ K + P WSP G IAF Sbjct: 282 NPSFSPDGTRLVFVSNKDGTPRIYQMQISPEQHSPRLLIKKYRNSSCPTWSPDGKKIAFC 341 Query: 365 KFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I V G E+L + ++P+W+ L++S S+L+ + L Sbjct: 342 SVIKGVRQICVYDLASGRDEQLTTSTEHKESPSWAADSNHLVYSA--GSSNTSELFLLSL 399 Query: 424 -NGRNETLINTPAYASDPQWVGF 445 ++ ++ P W F Sbjct: 400 ITKKSRKIVIGSGEKRFPCWGAF 422 >gi|62185544|ref|YP_220329.1| translocation protein TolB [Chlamydophila abortus S26/3] gi|81312309|sp|Q5L4R3|TOLB_CHLAB RecName: Full=Protein tolB; Flags: Precursor gi|62148611|emb|CAH64383.1| putative TolB protein [Chlamydophila abortus S26/3] Length = 427 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 128/326 (39%), Gaps = 14/326 (4%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG--IIK 190 ++ + + A R+ H +D I+ ++T G + +I+F + + Sbjct: 103 TQNHQPVHSLMLTEDNALNRQKIHEAADKIHYALTSVPGISSGKIIFSLSKNSQDCELKQ 162 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L +D DG N+R LT + P + K Y + + + + + Sbjct: 163 GELWSVDYDGGNLRPLTQENS-LSITPSWMHIGSKKPYLYVSYKFGIPKIFLGSLENTTG 221 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-----NATERLTN-TLFIN 304 K+I + + P FS K D++ R+ N T Sbjct: 222 KKILHLQGNQFMPAFSPRKKLLAFISDAYGNPDLFLQSFSLSQGAMGKPRRILNETFGTQ 281 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAF 363 + S+SPD S++VF S+++G+ +LY++Q + R+ K + P WSP G IAF Sbjct: 282 GNPSFSPDGSKLVFVSNKDGRPRLYILQIDPEMLSPRLLTKKYRNSSCPSWSPDGKKIAF 341 Query: 364 TKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I V G +L + + P+W+ + L++S G+ S+LY + Sbjct: 342 CSVIKGVRQICVYDLATGKDYQLTTTPVDKEGPSWAVDSQHLVYSAGNTGE--SELYLLS 399 Query: 423 L-NGRNETLINTPAYASDPQWVGFMD 447 L + + ++ P W GF D Sbjct: 400 LITQKTKKIVIGLGEKRFPSWGGFPD 425 >gi|326566623|gb|EGE16765.1| tolB-like protein [Moraxella catarrhalis BC1] gi|326576855|gb|EGE26761.1| tolB-like protein [Moraxella catarrhalis O35E] Length = 420 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 170/436 (38%), Gaps = 27/436 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ L L + T + V + S +A F ++ +S Sbjct: 6 TKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLS------ 59 Query: 73 LQRSDVFNLISQDSFKQ-KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 L + + Q TN D + W + G + ++ + + ++L + + + Sbjct: 60 LAGLG----TTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEII 115 Query: 132 DVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + + S PAS + ISD IYQ ITG+ D +I +V ES Sbjct: 116 DTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNK 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +SL ++D G IR L I+ P FSP+ +AY+ ++ +Y++ Sbjct: 176 ISSLKLIDPSGQLIRTLDTVNGSII-TPTFSPDGLSIAYSVQTKNNLPIIYIVSV-SGGT 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK + F LAP FS +G L S ++ +IY ++L +N + LT + + Sbjct: 234 PKLVTPFWGHNLAPSFSPDGSSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPN 293 Query: 309 YSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y D+S ++ +D+ + Q LY + +I+ +P SP G + + Sbjct: 294 YLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIAS----YATNPRLSPDGSKLVYLS-- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + I G ++ + ++SPSG +I++ + +L L+ Sbjct: 348 GGQIIIA--NTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKN--QLMIRSLSSNA 403 Query: 428 ETLINTPAYASDPQWV 443 I T DP W Sbjct: 404 IRTIPTSGTVRDPIWS 419 >gi|168699850|ref|ZP_02732127.1| WD40 domain protein beta Propeller [Gemmata obscuriglobus UQM 2246] Length = 294 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 11/267 (4%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D ++ D + +L K +L +M G ++ L P + F+ + Sbjct: 35 DGSFKQNVQWSPDGKTLLLTRIHEG-----KMALWIMPAAGGEMKRLLPGHTEPHFDGHY 89 Query: 220 SPNQQKVAYATYDDEDILRVYLMDT--RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++ Y E +D + + ++ +PRFS +GK L Sbjct: 90 SPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHKAFEESPRFSPDGKTVLWVST 149 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +++ D+Y+V RLTN ++ ++SPD ++ F S R G+++++VM ++G+ Sbjct: 150 RNKNPDLYAVTAGGKGERRLTNDPAYDLHPAWSPDGKRVAFASGRSGRQKIHVMSADGTG 209 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPT 396 ++++ D E PVW P G+ IAF + I +M DG R L + +P Sbjct: 210 VQKLT-DGEFLDSWPVWHPDGERIAFASNRSGNYDIWLMTADGKALRNLTGHKAQDTSPA 268 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL 423 W+P G+ L F + G GS +Y +D+ Sbjct: 269 WAPDGKKLAFVSTRGG--GSDIYVLDV 293 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 10/250 (4%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N ++SP+ + + + + +++M + + Sbjct: 26 ENAPVRLTKDGSFKQNVQWSPDGKTLLLTRIHEGKMA-LWIMPAAGGEMKRLLPGHTEPH 84 Query: 261 LAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +S +G R + K D + I + + L S +SPD + Sbjct: 85 FDGHYSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHKAFEESPRFSPDGKTV 144 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 ++ S R LY + + G ++R++ D A P WSP G +AF + I VM Sbjct: 145 LWVSTRNKNPDLYAVTAGGKGERRLTND-PAYDLHPAWSPDGKRVAFASGRSGRQKIHVM 203 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTP 434 DG+ + L + P W P G + F+ + G ++ + +G+ L Sbjct: 204 SADGTGVQKLTDGEFLDSWPVWHPDGERIAFASNRSG--NYDIWLMTADGKALRNLTGHK 261 Query: 435 AYASDPQWVG 444 A + P W Sbjct: 262 AQDTSPAWAP 271 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 67/148 (45%), Gaps = 11/148 (7%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + R++ + + D++ + + + R+ F S + + VM DG Sbjct: 158 AVTAGGKGERRLTNDPAYDLHPAWSPDG----KRVAFASGR----SGRQKIHVMSADGTG 209 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 ++ LT + + P + P+ +++A+A+ + ++LM T +A + + ++ + Sbjct: 210 VQKLTDG-EFLDSWPVWHPDGERIAFASNRSGN-YDIWLM-TADGKALRNLTGHKAQDTS 266 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQ 290 P ++ +GK+ + DIY +D++ Sbjct: 267 PAWAPDGKKLAFVSTRGGGSDIYVLDVK 294 >gi|149923449|ref|ZP_01911853.1| tolB protein [Plesiocystis pacifica SIR-1] gi|149815701|gb|EDM75228.1| tolB protein [Plesiocystis pacifica SIR-1] Length = 432 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 93/409 (22%), Positives = 166/409 (40%), Gaps = 39/409 (9%) Query: 42 SANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQ 101 S + +A GK+ +++ K+ Q S F +I + S + + + Sbjct: 53 SGQTRLLGVAIP-------ADGKLGDLLRKNAQISAGFEVIPRRSLPGSLVRATGFNK-K 104 Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR-KQIIGKKFFSSPASWRKIAHTISD 160 W+ +G +V + E ++R+ +++ K ++ K + A+ + Sbjct: 105 AWSDIGNVDVVI--LTSEAGSQIRIAM--YELSKGDKPVLSKGY--PAGDPLGAANKFMN 158 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++ T E G F SRI FV KN + + +G +T +R + P Sbjct: 159 EVINYYTKEPGVFGSRIAFVRTRRNPTTSKN-VYTVQMNGEATSAVTANRSLNIL-PSMG 216 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P +V + +Y + D I PKR+ + + L S +G +++ KD Sbjct: 217 P-GGEVVFTSYAKRNP------DLWISNGPKRVSKYPGLNLGGAVSPDGGTIALALSKDG 269 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 +IY++D N RLT I+ S+S QI F SDR G Q+Y M ++G R Sbjct: 270 NAEIYTIDRSGNIKNRLTKNPAIDGQPSWS-GGGQIAFVSDRAGGPQVYRMSASGGGASR 328 Query: 341 ISQDKEASYFDPVWSP---QGDLIAFT-KFSGEKFAIGVMK-KDGSQERLLVEDSNLQAP 395 +++ + P WS +G I ++ + S ++ I + K G RL P Sbjct: 329 VTKQGSYNQ-SPDWSQGAGRGQWIVYSGRDSSNRYDIFKVDVKSGKVVRLTQSPGRNLDP 387 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 T+SP GR + + + G +Y + +G N + AS P W Sbjct: 388 TFSPDGRWVAY------NQGGSIYVANEDGNNN--VEIAKGASTPDWGP 428 >gi|294056510|ref|YP_003550168.1| WD40 domain protein beta Propeller [Coraliomargarita akajimensis DSM 45221] gi|293615843|gb|ADE55998.1| WD40 domain protein beta Propeller [Coraliomargarita akajimensis DSM 45221] Length = 390 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 19/340 (5%) Query: 109 QVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 + ++ +G ++ + Q + S + + D + + Sbjct: 66 DATIRLKLEPQGGGSIKATIQ----AKGAQP--QIRTVSGSDQQNAVLRACDLVVKWAVK 119 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 +G F ++ FV K+ + + N++ LT R ++ P +SPN +K+ Y Sbjct: 120 SEGFFAGKLAFV----GKQRGKSEVYSSNLLFGNVKSLTSDR-ALVTGPSWSPNGRKLVY 174 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 TY +Y+MD R I F+ RFS +G R +++ +I+ D Sbjct: 175 TTY-KGGFPDIYMMDFD-QRRRVPIATFKGTNTGARFSPDGSRIAMTLSSTGNSEIWVTD 232 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 Q RLT + S S+SPD ++VF SD GK QLY + +NG +R+ + Sbjct: 233 QQGKNGRRLTKNKSLEASPSWSPDGRRLVFTSDSFGKPQLYEISANGGPMRRVPTNVSRY 292 Query: 349 YFDPVWSPQ-GDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 +P W+PQ G IAFT G F + V + G ++ + P W GR LIF Sbjct: 293 CAEPAWNPQKGHQIAFTAAVGGGFQVFVYDSQQGGSTQVTSVAGDAIEPCWLNDGRHLIF 352 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTP--AYASDPQWVG 444 +++ G +L +D + + ++TP AS +V Sbjct: 353 TQRSGGKM--RLMLVDTESKKVSSLHTPNFGDASSASYVY 390 >gi|326567863|gb|EGE17964.1| tolB-like protein [Moraxella catarrhalis 12P80B1] Length = 420 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 170/436 (38%), Gaps = 27/436 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ L L + T + V + S +A F ++ +S Sbjct: 6 TKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLS------ 59 Query: 73 LQRSDVFNLISQDSFKQ-KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 L + + Q TN D + W + G + ++ + + ++L + + + Sbjct: 60 LAGLG----TTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEII 115 Query: 132 DVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + + S PAS + ISD IYQ ITG+ D +I +V ES Sbjct: 116 DTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNK 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +SL ++D G IR L I+ P FSP+ +AY+ ++ +Y++ Sbjct: 176 ISSLKLIDPSGQLIRTLDTVNGSII-TPTFSPDGLSIAYSVQTKNNLPIIYIVSV-SGGT 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK + F LAP FS +G L S ++ +IY ++L +N + LT + + Sbjct: 234 PKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPN 293 Query: 309 YSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y D+S ++ +D+ + Q LY + +I+ +P SP G + + Sbjct: 294 YLADASGFIYTADKGTRHQSLYRYDFGTTHSTQIAS----YATNPRLSPDGSKLVYLS-- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + I G ++ + ++SPSG +I++ + +L L+ Sbjct: 348 GGQIIIA--NTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKN--QLMIRSLSSNA 403 Query: 428 ETLINTPAYASDPQWV 443 I T DP W Sbjct: 404 IRTIPTSGTVRDPIWS 419 >gi|326560194|gb|EGE10582.1| tolB-like protein [Moraxella catarrhalis 7169] gi|326564933|gb|EGE15135.1| tolB-like protein [Moraxella catarrhalis 46P47B1] gi|326570295|gb|EGE20340.1| tolB-like protein [Moraxella catarrhalis BC8] gi|326575773|gb|EGE25696.1| tolB-like protein [Moraxella catarrhalis CO72] Length = 420 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 170/436 (38%), Gaps = 27/436 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ L L + T + V + S +A F ++ +S Sbjct: 6 TKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLS------ 59 Query: 73 LQRSDVFNLISQDSFKQ-KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 L + + Q TN D + W + G + ++ + + ++L + + + Sbjct: 60 LAGLG----TTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEII 115 Query: 132 DVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + + S PAS + ISD IYQ ITG+ D +I +V ES Sbjct: 116 DTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNK 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +SL ++D G IR L I+ P FSP+ +AY+ ++ +Y++ Sbjct: 176 ISSLKLIDPSGQLIRTLDTVNGSII-TPTFSPDGLSIAYSVQTKNNLPIIYIVSV-SGGT 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK + F LAP FS +G L S ++ +IY ++L +N + LT + + Sbjct: 234 PKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPN 293 Query: 309 YSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y D+S ++ +D+ + Q LY + +I+ +P SP G + + Sbjct: 294 YLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIAS----YATNPRLSPDGSKLVYLS-- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + I G ++ + ++SPSG +I++ + +L L+ Sbjct: 348 GGQIIIA--NTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKN--QLMIRSLSSNA 403 Query: 428 ETLINTPAYASDPQWV 443 I T DP W Sbjct: 404 IRTIPTSGTVRDPIWS 419 >gi|326559273|gb|EGE09701.1| tolB-like protein [Moraxella catarrhalis 103P14B1] gi|326573329|gb|EGE23297.1| tolB-like protein [Moraxella catarrhalis 101P30B1] Length = 420 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 170/436 (38%), Gaps = 27/436 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ L L + T + V + S +A F ++ +S Sbjct: 6 TKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLS------ 59 Query: 73 LQRSDVFNLISQDSFKQ-KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 L + + Q TN D + W + G + ++ + + ++L + + + Sbjct: 60 LAGLG----TTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEII 115 Query: 132 DVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + + S PAS + ISD IYQ ITG+ D +I +V ES Sbjct: 116 DTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNK 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +SL ++D G IR L I+ P FSP+ +AY+ ++ +Y++ Sbjct: 176 ISSLKLIDPSGQLIRTLDTVNGSII-TPTFSPDGLSIAYSVQTKNNLPLIYIVPV-SGGT 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK + F LAP FS +G L S ++ +IY ++L +N + LT + + Sbjct: 234 PKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTLNGAENAPN 293 Query: 309 YSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y D+S ++ +D+ + Q LY + +I+ +P SP G + + Sbjct: 294 YLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIAS----YATNPRLSPDGSKLVYLS-- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + I G ++ + ++SPSG +I++ + +L L+ Sbjct: 348 GGQIIIA--NTKGHIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKN--QLMIRSLSSNA 403 Query: 428 ETLINTPAYASDPQWV 443 I T DP W Sbjct: 404 IRTIPTSGTVRDPIWS 419 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%) Query: 360 LIAFTKFSGEKFA----IGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 IA+ + SG + ++ G R L + ++ PT+SP G S+ +S + + Sbjct: 162 KIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNL 221 Query: 415 GSKLYSIDLNGRNETLINTPAYASD--PQWVG 444 +Y + ++G L+ TP + + P + Sbjct: 222 -PLIYIVPVSGGTPKLV-TPFWGHNLAPSFSP 251 >gi|118574576|sp|Q256H8|TOLB_CHLFF RecName: Full=Protein tolB; Flags: Precursor Length = 427 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 123/307 (40%), Gaps = 14/307 (4%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPS 209 R+ H ++D I+ ++T G + +I+F + L +D DG N+R LT Sbjct: 122 RQKIHEVADKIHYALTRVPGISSGKIVFSLSKNPHDGELKQGELWSVDYDGENLRALTQE 181 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P + Y + + + + + + K++ N + P FS Sbjct: 182 NS-LSITPNWLNIGSNNPYFYVSYKFGIPKIFLGSLENTSGKKVLNLQGNQFMPVFSPRK 240 Query: 270 KRALISVQKDEAMDIYS---VDLQS--NATERLTN-TLFINISASYSPDSSQIVFESDRE 323 K+ D++ Q R+ N + + S+SPD S++VF S+++ Sbjct: 241 KQLAFISDAYGNPDLFLQGFSPSQGAMGKPRRVLNESFGTQGNPSFSPDGSKLVFVSNKD 300 Query: 324 GKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GS 381 G+ +LY++Q + R+ K + P WSP G IAF I + G Sbjct: 301 GRPRLYIIQVDPEIQTPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICLYDLSTGK 360 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDP 440 +L + + P+W+ L++S G+ S+LY + L + ++ P Sbjct: 361 DYQLTTTPIDKEGPSWAIDSHHLVYSAGNSGE--SELYLLSLITQKTNKIVIGLGEKRFP 418 Query: 441 QWVGFMD 447 W GF + Sbjct: 419 SWGGFPN 425 >gi|89897845|ref|YP_514955.1| translocation protein TolB [Chlamydophila felis Fe/C-56] gi|89331217|dbj|BAE80810.1| tolB protein precursor [Chlamydophila felis Fe/C-56] Length = 437 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 123/307 (40%), Gaps = 14/307 (4%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPS 209 R+ H ++D I+ ++T G + +I+F + L +D DG N+R LT Sbjct: 132 RQKIHEVADKIHYALTRVPGISSGKIVFSLSKNPHDGELKQGELWSVDYDGENLRALTQE 191 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P + Y + + + + + + K++ N + P FS Sbjct: 192 NS-LSITPNWLNIGSNNPYFYVSYKFGIPKIFLGSLENTSGKKVLNLQGNQFMPVFSPRK 250 Query: 270 KRALISVQKDEAMDIYS---VDLQS--NATERLTN-TLFINISASYSPDSSQIVFESDRE 323 K+ D++ Q R+ N + + S+SPD S++VF S+++ Sbjct: 251 KQLAFISDAYGNPDLFLQGFSPSQGAMGKPRRVLNESFGTQGNPSFSPDGSKLVFVSNKD 310 Query: 324 GKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GS 381 G+ +LY++Q + R+ K + P WSP G IAF I + G Sbjct: 311 GRPRLYIIQVDPEIQTPRLLTKKYRNSSCPSWSPDGKKIAFCSVIKGVRQICLYDLSTGK 370 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDP 440 +L + + P+W+ L++S G+ S+LY + L + ++ P Sbjct: 371 DYQLTTTPIDKEGPSWAIDSHHLVYSAGNSGE--SELYLLSLITQKTNKIVIGLGEKRFP 428 Query: 441 QWVGFMD 447 W GF + Sbjct: 429 SWGGFPN 435 >gi|296113200|ref|YP_003627138.1| tolB-like protein [Moraxella catarrhalis RH4] gi|295920894|gb|ADG61245.1| tolB-like protein [Moraxella catarrhalis RH4] Length = 420 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 94/436 (21%), Positives = 170/436 (38%), Gaps = 27/436 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ L L + T + V + S +A F ++ +S Sbjct: 6 TKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLS------ 59 Query: 73 LQRSDVFNLISQDSFKQ-KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 L + + Q TN D + W + G + ++ + + ++L + + + Sbjct: 60 LAGLG----TTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEII 115 Query: 132 DVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + + S PAS + ISD IYQ ITG+ D +I +V ES Sbjct: 116 DTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNK 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +SL ++D G IR L I+ + FSP+ +AY+ ++ +Y++ Sbjct: 176 ISSLKLIDPSGQLIRTLDTVNGSIITQ-TFSPDGLSIAYSVQTKNNLPIIYIVSV-SGGT 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK + F LAP FS +G L S ++ +IY ++L +N + LT + + Sbjct: 234 PKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPN 293 Query: 309 YSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y D+S ++ +D+ + Q LY + +I+ +P SP G + + Sbjct: 294 YLADASGFIYTADKGTRRQSLYRYDFATTHSTQIAS----YATNPRLSPDGSKLVYLS-- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + I G ++ + ++SPSG +I++ + +L L+ Sbjct: 348 GGQIIIA--NTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKN--QLMIRSLSSNA 403 Query: 428 ETLINTPAYASDPQWV 443 I T DP W Sbjct: 404 IRTIPTSGTVRDPIWS 419 >gi|46447484|ref|YP_008849.1| translocation protein TolB [Candidatus Protochlamydia amoebophila UWE25] gi|67461964|sp|Q6MA25|TOLB_PARUW RecName: Full=Protein tolB; Flags: Precursor gi|46401125|emb|CAF24574.1| putative TolB protein [Candidatus Protochlamydia amoebophila UWE25] Length = 469 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 79/464 (17%), Positives = 182/464 (39%), Gaps = 49/464 (10%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVAT-----NSANYSPVSIAFTKFVSIDELG---GKVSE 67 + L+ P H+ + ++ P+ +A + ++ + Sbjct: 12 WIQFLICFCLSLAPFFAHSIDEDPIVVRLSTDSSLVPLYLAPFTIEQTNFSPSYLKQLED 71 Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF---QDWNSLGAQVLVTGRVIKEGKDRL 124 +++ DL + L +++ ++ N + Q W + ++ G + + Sbjct: 72 ILTFDLNHNGSTYLSKRNASNDQLANAGELEDLGIAQTWQAQNIFYVIKGIIKENF---- 127 Query: 125 RVEFRLWDVKDRKQIIGK----KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 +++ + Q + K + R++ H I+D I++++ G +G +++IL+ Sbjct: 128 ---LQVFILNTNTQNLKKCDPVMLTGDLSQDRRLIHRIADTIHKALFGVEGVASTKILYT 184 Query: 181 SESVVSGIIKN---SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-----KVAYATYD 232 ++ + + + D DG N R +T + P + P ++ Y +Y Sbjct: 185 VKTPLVDNKQKLSSEVWEADYDGENARQITQEKS-FCVNPTYIPPKKGFLSGNFLYVSYQ 243 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQ 290 ++Y+ + + D +R+ + L P S + D++ + + Sbjct: 244 AGQS-KIYIANLK-DGKGQRLLKLKGNQLMPTLSQQRDKIAFISDATGNPDLFLQLFNPE 301 Query: 291 SN---ATERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVM--QSNGSDQKRIS-- 342 + +++ + + S++PD +++ F SD++G ++YV+ G+ K I Sbjct: 302 TGVVGKPQQIFSAKLATQSTPSFNPDGTKVAFVSDKDGSPKIYVIAIPEPGTSLKNIKAT 361 Query: 343 --QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSP 399 + P WSP G IA+ + I + +QE+ L + N + P+W+P Sbjct: 362 LITKRNRESSAPAWSPDGTKIAYCSRTDGIRQIWIYDFTTNQEKQLTQGPINKENPSWAP 421 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQW 442 + L+++ D S+LY I+LN T I + P W Sbjct: 422 NSLHLVYNSADTND--SQLYLINLNQTEATRITSGKGEKRYPNW 463 >gi|330443987|ref|YP_004376973.1| TolB protein [Chlamydophila pecorum E58] gi|328807097|gb|AEB41270.1| TolB protein precursor [Chlamydophila pecorum E58] Length = 423 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 121/324 (37%), Gaps = 14/324 (4%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI--IKNS 192 + + + R+ H +D ++ ++TG G + RI+F + Sbjct: 101 SPQTLHSLTLSQDLSHDRQQIHQAADIVHHALTGIPGISSGRIIFSRSKGGKTQELKQGE 160 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +D DG N+ LT + P+++ Y + + + + + K+ Sbjct: 161 LWAVDYDGGNLVPLTKEAS-LSVTPKWADLSADSPYFYVSYKLGVPKIFLGSLKNTEGKK 219 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS---VDLQS--NATERLTN-TLFINIS 306 + L P +S K D++ RL N T S Sbjct: 220 ALSLTGNQLMPVYSPKKKLLAFIADTYGNPDLFIQAFSPYSGFLGRPRRLLNETFGTQGS 279 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTK 365 S++P SQ+VF S+R+G+ +LY+M + Q R+ K + P WSP G IAF Sbjct: 280 PSFNPQGSQLVFVSNRDGRPRLYIMNLDPEPQSPRLLTKKYRNCSCPTWSPDGKKIAFCS 339 Query: 366 FSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL- 423 I V G +L + + P+W+ R L+FS S+LY + L Sbjct: 340 VIKGTRQICVYDLTSGEGSQLTTSPQDKEGPSWAADSRHLVFSS--GNAEESELYLLSLI 397 Query: 424 NGRNETLINTPAYASDPQWVGFMD 447 + + ++ P W F+ Sbjct: 398 TKKTKKIVIGSGEKRFPSWGAFLH 421 >gi|326571032|gb|EGE21056.1| tolB-like protein [Moraxella catarrhalis BC7] Length = 420 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 94/436 (21%), Positives = 169/436 (38%), Gaps = 27/436 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 K+ L L + T + V + S +A F ++ +S Sbjct: 6 TKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLS------ 59 Query: 73 LQRSDVFNLISQDSFKQ-KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 L + + Q TN D + W + G + ++ + + ++L + + + Sbjct: 60 LAGLG----TTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEII 115 Query: 132 DVKDRKQIIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 D + + S PAS + ISD IYQ ITG+ D +I +V ES Sbjct: 116 DTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNK 175 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +SL ++D G IR L I+ P FS + +AY+ ++ +Y++ Sbjct: 176 ISSLKLIDPSGQLIRTLDTVNGSII-TPTFSSDGLSIAYSVQTKNNLPIIYIVSV-SGGT 233 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISAS 308 PK + F LAP FS +G L S ++ +IY ++L +N + LT + + Sbjct: 234 PKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPN 293 Query: 309 YSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 Y D+S ++ +D+ + Q LY + +I+ +P SP G + + Sbjct: 294 YLADASGFIYTADKGARRQSLYRYDFGTTHSTQIAS----YATNPRLSPDGSKLVYLS-- 347 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 G + I G ++ + ++SPSG +I++ + +L L+ Sbjct: 348 GGQIIIA--NTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKN--QLMIRSLSSNA 403 Query: 428 ETLINTPAYASDPQWV 443 I T DP W Sbjct: 404 IRTIPTSGTVRDPIWS 419 >gi|15618691|ref|NP_224977.1| translocation protein TolB [Chlamydophila pneumoniae CWL029] gi|15836315|ref|NP_300839.1| translocation protein TolB [Chlamydophila pneumoniae J138] gi|16752259|ref|NP_445627.1| translocation protein TolB [Chlamydophila pneumoniae AR39] gi|33242141|ref|NP_877082.1| translocation protein TolB [Chlamydophila pneumoniae TW-183] gi|6647886|sp|Q9Z7C4|TOLB_CHLPN RecName: Full=Protein tolB; Flags: Precursor gi|4377091|gb|AAD18920.1| macromolecule transporter [Chlamydophila pneumoniae CWL029] gi|7190004|gb|AAF38861.1| tolB protein, putative [Chlamydophila pneumoniae AR39] gi|8979155|dbj|BAA98990.1| macromolecule transporter [Chlamydophila pneumoniae J138] gi|33236651|gb|AAP98739.1| TolB precursor [Chlamydophila pneumoniae TW-183] gi|269302571|gb|ACZ32671.1| tolB protein-like protein [Chlamydophila pneumoniae LPCoLN] Length = 431 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 118/305 (38%), Gaps = 14/305 (4%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII--KNSLCVMDRDGANIRYLTPS 209 R+ H +D ++ ++TG G +I+F S+ + L D DG N+ LT Sbjct: 121 RQKIHHAADTVHYALTGIPGISAGKIVFALSSLGKDQKLKQGELWTTDYDGKNLAPLTT- 179 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P++ Y + + + + + K++ + L P FS Sbjct: 180 ECSLSITPKWVGVGSNFPYLYVSYKYGVPKIFLGSLENTEGKKVLPLKGNQLMPTFSPRK 239 Query: 270 KRALISVQKDEAMDIYS--VDLQSN---ATERLTN-TLFINISASYSPDSSQIVFESDRE 323 K D++ L S RL N + S++P+ SQ+VF S+++ Sbjct: 240 KLLAFVADTYGNPDLFIQPFSLTSGPMGRPRRLLNENFGTQGNPSFNPEGSQLVFISNKD 299 Query: 324 GKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGS 381 G+ +LY+M + R+ K + P WSP G IAF I + G Sbjct: 300 GRPRLYIMSLDPEPQAPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICIYDLSSGE 359 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDP 440 +L +N ++P+W+ R L+FS S+LY I L + + P Sbjct: 360 DYQLTTSPTNKESPSWAIDSRHLVFSA--GNAEESELYLISLVTKKTNKIAIGVGEKRFP 417 Query: 441 QWVGF 445 W F Sbjct: 418 SWGAF 422 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 3/138 (2%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V S G + + +D + R LT P +SP+ +K+A+ + + + ++ Sbjct: 293 VFISNKDGRPRLYIMSLDPEPQAPRLLTKKYRNSSC-PAWSPDGKKIAFCSV-IKGVRQI 350 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D + + + +P ++ + + + S E ++Y + L + T ++ Sbjct: 351 CIYDLSSGEDYQ-LTTSPTNKESPSWAIDSRHLVFSAGNAEESELYLISLVTKKTNKIAI 409 Query: 300 TLFINISASYSPDSSQIV 317 + S+ Q + Sbjct: 410 GVGEKRFPSWGAFPQQPI 427 >gi|297182007|gb|ADI18182.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0200_39N20] Length = 428 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 86/440 (19%), Positives = 158/440 (35%), Gaps = 37/440 (8%) Query: 14 KINLCLLLVLIGGFFPT--SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 K+ CL +V + T + A + + + PV + + +V + Sbjct: 15 KLRSCLYIVSVIVLLSTGRNALAIDYIEITNPKFIPVKVGVA--IGAGTEADEVQNIFKA 72 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 +L + F +I Q D+I D + +++ +W Sbjct: 73 NLDKVLYFQIIPGTK--QVFEESDNIVFHVDLELKK--------------NPVQLNSIIW 116 Query: 132 DVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + K F R++ +SD ++ G SRI + + + Sbjct: 117 SQGKKEALASKTFELEKDQDIRELGLAVSDWFVENTLQFNGVATSRIAY---TAQKTNRR 173 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 ++ + DG I+ + + F +S + + + Y T+ R+ Sbjct: 174 KNIMLSSYDGTVIQRFSYNLGSNNFS-SWSFDNKNILYTTFTRSKAQLALQPSIRL--RS 230 Query: 251 KRIGNFRSMI-LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + L + +GK L+++ K DIYS +L E L N + S Sbjct: 231 KILAFPAGSQPLGASWHPDGKSILLTLMKQGNADIYSYNLSDAILESLFNWKSLETSPHM 290 Query: 310 SPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD +I F SD + Q+Y+ +R++ + P WSP +A+ + Sbjct: 291 SPDGKKIAFVSDAAYPRRPQIYIHNLATEKTERVTFKGNYN-SSPKWSPDSTQLAYERQK 349 Query: 368 GEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NG 425 F + + L + + P WSP+G+ +IFS K SKLY I G Sbjct: 350 KNIFQLYKYNLLTRRHVQLTFGRHDFEKPDWSPNGKQIIFSAKM--KKVSKLYYISSFGG 407 Query: 426 RNETLINTPAYASD--PQWV 443 R + +P S+ P W Sbjct: 408 RTIRVTKSPPNISETNPVWS 427 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 3/178 (1%) Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 R + QK + +I +R + L N +S+S D+ I++ + K QL Sbjct: 161 SRIAYTAQKTNRRKNIMLSSYDGTVIQRFSYNLGSNNFSSWSFDNKNILYTTFTRSKAQL 220 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + S K ++ + W P G I T I + L Sbjct: 221 ALQPSIRLRSKILAFPAGSQPLGASWHPDGKSILLTLMKQGNADIYSYNLSDAILESLFN 280 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 +L+ +P SP G+ + F ++Y +L + Y S P+W Sbjct: 281 WKSLETSPHMSPDGKKIAFVSDAAYPRRPQIYIHNLATEKTERVTFKGNYNSSPKWSP 338 >gi|34556943|ref|NP_906758.1| translocation protein TolB [Wolinella succinogenes DSM 1740] gi|67461991|sp|Q7MA16|TOLB_WOLSU RecName: Full=Protein tolB; Flags: Precursor gi|34482658|emb|CAE09658.1| PUTATIVE TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Wolinella succinogenes] Length = 421 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 89/436 (20%), Positives = 178/436 (40%), Gaps = 34/436 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGG----KVSEV 68 M+I + L L L F ++ A ++V ++ + + S E+ +V ++ Sbjct: 1 MRILVFLWLGLSSLF---AVDATLEVVK---KFANMPSIIVEDSSTREVERGLTLRVYKM 54 Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 + DL+ S FN+ + ++ D + + + ++ + +EG + E Sbjct: 55 LVGDLKVSSHFNVQEGGA-----SSFDMVMDYGAYRQKKVDLVAKVKAGREGSG-ILAEL 108 Query: 129 RLWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 RL+DV + K + + + +AH ++ DI I D+ +R FV S + Sbjct: 109 RLYDVNSGDSVFAKSYTVAREDRYPFVAHKMAIDINNYIKAPSIDWMNR--FVVLSKYTA 166 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK-VAYATYDDEDILRVYLMDTRI 246 ++ + V D + + ++ P+++ QQ + Y Y + L Y + T Sbjct: 167 PSESQIVVADYT-LTFQNVIIKDGRLNIFPKWANEQQDAIYYTKYLTKPTLFRYNLYT-- 223 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 ++I M++A S++GK+ L+++ DI+ D Q+ ++LT I++S Sbjct: 224 -GESRKITESEGMLVASDVSADGKKLLLTMAPHTQSDIFLFDTQTGTRKQLTRYPGIDVS 282 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A + D +I+F SDR G ++ +GS+ + Q + S G I ++ Sbjct: 283 AHFIEDERRIMFISDRLGYPNVFATGLDGSET--VEQMVFHGRNNNAASAFGQYIVYSSR 340 Query: 367 SGEK------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 F + ++ R L + Q P +S G ++++ K S L Sbjct: 341 ESSNEFDTNTFNLYLVSTKSDYIRRLTANGVNQMPRFSQDGETVMYL--KHNGAQSALGV 398 Query: 421 IDLNGRNETLINTPAY 436 I LN L P+ Sbjct: 399 IRLNYNKSYLFPLPSG 414 >gi|297181851|gb|ADI18030.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0200_19J16] Length = 428 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 82/439 (18%), Positives = 159/439 (36%), Gaps = 33/439 (7%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 +++ +L ++ ++ A + + + PV + + +V +V Sbjct: 15 HLRSSLYIISGIVLLSTGRIALAIDYIEITNPKFIPVKVGVA--IGAGTEADEVQKVFKA 72 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 +L + F +I KQ+ D I D + +++ +W Sbjct: 73 NLDKVLYFKII--SGTKQEFEESDKIVFHVDLELKN--------------NPVQLNSIIW 116 Query: 132 DVKDRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 ++ + K F + R++ +SD ++ G SRI + ++ + + Sbjct: 117 SQGKKEAVASKTFKLENERDIRELGLAVSDWFVENTLQFNGVATSRIAYTAQKI---NRR 173 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 ++ + DG I+ + + F +S + + + Y T+ R+ Sbjct: 174 KNIMLSSYDGTVIQRFSYNLGSNNFS-SWSFDNKNILYTTFTRSKAQLAIQPSIRLRSKI 232 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 S L + +GK L+++ K DIYS +L + L N + S S Sbjct: 233 -LAFPVGSQPLGASWHPDGKSILLTLMKQGNADIYSYNLSDAKLQSLFNWKSLETSPHMS 291 Query: 311 PDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 PD +I F SD + Q+Y+ +RI+ + P WSP + + + Sbjct: 292 PDGKKIAFVSDTAYPRRPQIYIHNLATEKTERITFKGNYN-SSPKWSPDSTKLVYERQKK 350 Query: 369 EKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGR 426 F + + L + + P WSP+G+ +IFS K KLY I GR Sbjct: 351 NIFQLYKYNLLTRRHVQLTFGRDDSEKPDWSPNGKQIIFSAKT--KKVPKLYYISSFGGR 408 Query: 427 NETLINTPAYASD--PQWV 443 + T S+ P W Sbjct: 409 TIRVTKTLPNISETNPVWS 427 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 3/178 (1%) Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 R + QK + +I +R + L N +S+S D+ I++ + K QL Sbjct: 161 SRIAYTAQKINRRKNIMLSSYDGTVIQRFSYNLGSNNFSSWSFDNKNILYTTFTRSKAQL 220 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + S K ++ + W P G I T I ++ + L Sbjct: 221 AIQPSIRLRSKILAFPVGSQPLGASWHPDGKSILLTLMKQGNADIYSYNLSDAKLQSLFN 280 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 +L+ +P SP G+ + F ++Y +L I Y S P+W Sbjct: 281 WKSLETSPHMSPDGKKIAFVSDTAYPRRPQIYIHNLATEKTERITFKGNYNSSPKWSP 338 >gi|297171859|gb|ADI22848.1| periplasmic component of the Tol biopolymer transport system [uncultured nuHF2 cluster bacterium HF0500_31B05] Length = 848 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 14/273 (5%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 RI F S+ + M DG R+ + + EP +SP+ ++A+ + Sbjct: 43 DRIAFTSDRDGD----FDIYAMSSDGE-ERFQLTRHEAMDGEPDWSPDGLRLAFVSNRAF 97 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + +Y M+ +R+ ++ +P ++ +G R +DE ++IYSVD S AT Sbjct: 98 NN-EIYTMNGD-GSGVQRMTEHEAVDGSPAWAPDGSRIAFVSDRDENLEIYSVDTASGAT 155 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 RLTN ++ ++SPD Q++F S R G ++Y ++G + +S EA+ P W Sbjct: 156 TRLTNHEADDLEPAWSPDGRQLLFVSSRSGNAEIYAADADGGNPVNVST-HEATDGSPSW 214 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGS--QERLLVEDSNLQA--PTWSPSGRSLIFSRKK 410 SP G IA+T + +M + L DS P+WSP L F + Sbjct: 215 SPDGTTIAYTSDRDGNSDLYLMSAHAPEIEPVNLTYDSAFDGFTPSWSPDSEQLTFVSNR 274 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 G+ ++YS+ + + + + A P W Sbjct: 275 SGNNDFEIYSMFV--QPQRFLEELDQAGFPAWS 305 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 12/272 (4%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ FVS N + M+ DG+ ++ +T + + P ++P+ ++A+ + DE+ Sbjct: 88 RLAFVSNR----AFNNEIYTMNGDGSGVQRMTE-HEAVDGSPAWAPDGSRIAFVSDRDEN 142 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 L +Y +DT A R+ N + L P +S +G++ L + +IY+ D Sbjct: 143 -LEIYSVDTASG-ATTRLTNHEADDLEPAWSPDGRQLLFVSSRSGNAEIYAADADGGNPV 200 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR--ISQDKEASYFDPV 353 ++ + S S+SPD + I + SDR+G LY+M ++ + + ++ D F P Sbjct: 201 NVSTHEATDGSPSWSPDGTTIAYTSDRDGNSDLYLMSAHAPEIEPVNLTYDSAFDGFTPS 260 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 WSP + + F + +R L E P WS +G L G Sbjct: 261 WSPDSEQLTFVSNRSGNNDFEIYSMFVQPQRFLEELDQAGFPAWSRNGNRLAVVA--QGA 318 Query: 414 TGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 ++ D +G + L A P W Sbjct: 319 VNKDIFVSDADGIEIDNLTTDAANERFPAWSP 350 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++A+ + D D +Y M + ++ +M P +S +G R + + Sbjct: 43 DRIAFTSDRDGD-FDIYAMSSD-GEERFQLTRHEAMDGEPDWSPDGLRLAFVSNRAFNNE 100 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 IY+++ + +R+T ++ S +++PD S+I F SDR+ ++Y + + R++ Sbjct: 101 IYTMNGDGSGVQRMTEHEAVDGSPAWAPDGSRIAFVSDRDENLEIYSVDTASGATTRLT- 159 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 + EA +P WSP G + F I DG + ++ +P+WSP G Sbjct: 160 NHEADDLEPAWSPDGRQLLFVSSRSGNAEIYAADADGGNPVNVSTHEATDGSPSWSPDGT 219 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD----PQWVG 444 ++ ++ +DG S LY + + +N ++ P W Sbjct: 220 TIAYTSDRDG--NSDLYLMSAHAPEIEPVNLTYDSAFDGFTPSWSP 263 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 22/278 (7%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTP-------------SRDQILFEPRFSPNQQKVAYATY 231 S + V DRDG + Y+ + Q +P +SP+ +++A+ + Sbjct: 437 WSPDGDRLVFVSDRDGNDEIYILTLADTTDTSLLRLTNNTQRDGDPTWSPDAKEIAFTSD 496 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D + L R+ + P +S N R + +IYS+D Sbjct: 497 RDGGVDLYTLRADAASSEAIRLTE-DGSVDDPVWSPNATRIAFVSDRTGDREIYSIDADG 555 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L++ + + ++ PD S + F S+R+G+ LY M+ +G + R++++++ Sbjct: 556 GTAVNLSDHPGEDYAPTWFPDGSLLAFVSNRDGQPDLYRMERDGDEVTRLTENEDEED-A 614 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKK 410 P WSP G + + S I ++ G R + + PTWS SG + + + Sbjct: 615 PSWSPSGLQLVYASGSSGNLNIQLIGSQGLVPRRVTDHPGADVCPTWSSSGDRIAYMSNR 674 Query: 411 DGDTGSKLYSIDLNG---RNETLINTP-AYASDPQWVG 444 DG ++Y + L + P A P W Sbjct: 675 DG--NYEIYVSKQDSLELAPTNLTSAPAADDRYPAWAP 710 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 10/258 (3%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + D A+ + + D + +P +SPN ++A+ + D +Y +D A Sbjct: 502 DLYTLRADAASSEAIRLTEDGSVDDPVWSPNATRIAFVSDRTGD-REIYSIDADGGTAV- 559 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + AP + +G +D D+Y ++ + RLT + S+SP Sbjct: 560 NLSDHPGEDYAPTWFPDGSLLAFVSNRDGQPDLYRMERDGDEVTRLTENEDEEDAPSWSP 619 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q+V+ S G + ++ S G +R++ D + P WS GD IA+ + Sbjct: 620 SGLQLVYASGSSGNLNIQLIGSQGLVPRRVT-DHPGADVCPTWSSSGDRIAYMSNRDGNY 678 Query: 372 AIGVMKKDGSQ--ERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 I V K+D + L ++ + P W+PS L+F +DG +++Y +D NG N Sbjct: 679 EIYVSKQDSLELAPTNLTSAPAADDRYPAWAPSRGELLFVSNRDG--NNEIYLMDANGSN 736 Query: 428 E-TLINTPAYASDPQWVG 444 L + P+ W Sbjct: 737 LVRLTDNPSEDLFATWSP 754 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 101/291 (34%), Gaps = 16/291 (5%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D + T + ++ FVS + + + + DQ F P + Sbjct: 251 DSAFDGFTPSWSPDSEQLTFVSNRSGNNDFEIYSMFVQ-----PQRFLEELDQAGF-PAW 304 Query: 220 SPNQQKVAYATYD--DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 S N ++A ++DI ID + + P +S + + Sbjct: 305 SRNGNRLAVVAQGAVNKDIFVSDADGIEIDN----LTTDAANERFPAWSPDASAIAFTSD 360 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D +IY + L + +SP+ S I F +DR+G E++Y+++S + Sbjct: 361 RDGNDEIYLMSPDGMVPFELITDAANDFDPVWSPNESTIGFVTDRDGNEEIYLVRSGAEE 420 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK----DGSQERLLVEDSNLQ 393 + + A+ D WSP GD + F I ++ D S RL Sbjct: 421 EAINLTENAANDRDFAWSPDGDRLVFVSDRDGNDEIYILTLADTTDTSLLRLTNNTQRDG 480 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 PTWSP + + F+ +DG D + DP W Sbjct: 481 DPTWSPDAKEIAFTSDRDGGVDLYTLRADAASSEAIRLTEDGSVDDPVWSP 531 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 12/253 (4%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +RI FVS+ + +D DG L+ + P + P+ +A+ + D Sbjct: 533 ATRIAFVSDRTGD----REIYSIDADGGTAVNLSD-HPGEDYAPTWFPDGSLLAFVSNRD 587 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + R R+ AP +S +G + + + ++I + Q Sbjct: 588 GQPDLYRME--RDGDEVTRLTENEDEEDAPSWSPSGLQLVYASGSSGNLNIQLIGSQGLV 645 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--QKRISQDKEASYFD 351 R+T+ ++ ++S +I + S+R+G ++YV + + + ++ A Sbjct: 646 PRRVTDHPGADVCPTWSSSGDRIAYMSNRDGNYEIYVSKQDSLELAPTNLTSAPAADDRY 705 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKK 410 P W+P + F I +M +GS L ++ + TWSP G ++F+ + Sbjct: 706 PAWAPSRGELLFVSNRDGNNEIYLMDANGSNLVRLTDNPSEDLFATWSPDGSQVVFASDR 765 Query: 411 DGDTGSKLYSIDL 423 G LY ++L Sbjct: 766 GGRF--DLYGMEL 776 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 15/234 (6%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S + V S SG + L + G R +T + P +S + ++AY + D Sbjct: 620 SGLQLVYASGSSGNLNIQL--IGSQGLVPRRVTDHPGADVC-PTWSSSGDRIAYMSNRDG 676 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + ++ AP + + + P ++ + L +D +IY +D + Sbjct: 677 NYEIYVSKQDSLELAPTNLTSAPAADDRYPAWAPSRGELLFVSNRDGNNEIYLMDANGSN 736 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM--------QSNGSDQKRISQDK 345 RLT+ ++ A++SPD SQ+VF SDR G+ LY M +Q+R++ Sbjct: 737 LVRLTDNPSEDLFATWSPDGSQVVFASDRGGRFDLYGMELVRDDQDNVTVVNQRRLTDFG 796 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 +S W I F I + +D + ERL +PTWSP Sbjct: 797 ISSTSSISWYSV-RDIVFASDRDGTSRIYL--RDITPERLTSSSGFDWSPTWSP 847 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 D IAFT F I M DG + L ++ P WSP G L F + ++ Sbjct: 43 DRIAFTSDRDGDFDIYAMSSDGEERFQLTRHEAMDGEPDWSPDGLRLAFVSNRA--FNNE 100 Query: 418 LYSIDLNGRNETLIN-------TPAYASDPQWVGFM 446 +Y+++ +G + +PA+A D + F+ Sbjct: 101 IYTMNGDGSGVQRMTEHEAVDGSPAWAPDGSRIAFV 136 >gi|108763053|ref|YP_628620.1| beta-propeller repeat-containing to-pal system protein TolB [Myxococcus xanthus DK 1622] gi|108466933|gb|ABF92118.1| tol-pal system beta propeller repeat protein TolB [Myxococcus xanthus DK 1622] Length = 366 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 9/272 (3%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +L ++ + G+ + + V+ DG + ++P+ + A D E Sbjct: 95 SLLVITATEEGGLHRQQMRVLPLDGKSPAVPLHPPRARARNASWAPDGTWLV-AESDAEG 153 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 V ++ R R+ P S +GK ++ ++Y + + Sbjct: 154 FSDVVRLEPREGGPEVRLTQVPQGCFEPAVSPDGKEVAFVCSREGDPEVYVANADGSGER 213 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVW 354 RLT + + +SPD +V SDRE K++LY ++ +GSD + +S + E + W Sbjct: 214 RLTFFHHEDRTPKWSPDGKWLVIVSDRERKDRLYFLRPDGSDLRAVSGESFEGDEREAAW 273 Query: 355 SPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 SP G + + I ++ G L + P WSP G+ L F ++ G Sbjct: 274 SPDGQRLVYVSRLPDGNARIWMVAVAGGAPVALTDGKHRDDMPAWSPDGKYLAFVSERQG 333 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 DT +Y + +G +T + T A P W+ Sbjct: 334 DT--DVYVMRADGSGQTRLTT---AKGPDWLP 360 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 107/273 (39%), Gaps = 18/273 (6%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV-AYATYDDEDILRVYLMDTRI 246 + + + DG + LT + P SP+ + + ++ + R + + Sbjct: 60 AGQKDVWKVSPDGVETQ-LTRGEEDEYPGP-LSPDGKSLLVITATEEGGLHRQQMRVLPL 117 Query: 247 DRAPKRIGNFRSMILA--PRFSSNGKRALISVQKDEAMDIYSV-DLQSNATERLTNTLFI 303 D + A ++ +G + + D+ + + RLT Sbjct: 118 DGKSPAVPLHPPRARARNASWAPDGTWLVAESDAEGFSDVVRLEPREGGPEVRLTQVPQG 177 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + SPD ++ F REG ++YV ++GS ++R++ P WSP G + Sbjct: 178 CFEPAVSPDGKEVAFVCSREGDPEVYVANADGSGERRLTFFH-HEDRTPKWSPDGKWLVI 236 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 K + ++ DGS R + + + + WSP G+ L++ + D ++++ Sbjct: 237 VSDRERKDRLYFLRPDGSDLRAVSGESFEGDEREAAWSPDGQRLVYVSRLP-DGNARIWM 295 Query: 421 IDLNGR-------NETLINTPAYASDPQWVGFM 446 + + G + + PA++ D +++ F+ Sbjct: 296 VAVAGGAPVALTDGKHRDDMPAWSPDGKYLAFV 328 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 189 IKNSLCVMDRDGANIRYLT-PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K+ L + DG+++R ++ S + E +SP+ Q++ Y + + R++++ Sbjct: 242 RKDRLYFLRPDGSDLRAVSGESFEGDEREAAWSPDGQRLVYVSRLPDGNARIWMVAV-AG 300 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 AP + + + P +S +GK ++ D+Y + + RLT + Sbjct: 301 GAPVALTDGKHRDDMPAWSPDGKYLAFVSERQGDTDVYVMRADGSGQTRLTTAKGPDWLP 360 Query: 308 SYSP 311 ++P Sbjct: 361 RWAP 364 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 74/227 (32%), Gaps = 58/227 (25%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNT------------------------------- 300 + ++ D++ V +LT Sbjct: 53 VIFLSERAGQKDVWKVSPD-GVETQLTRGEEDEYPGPLSPDGKSLLVITATEEGGLHRQQ 111 Query: 301 ------------------LFINISASYSPDSSQIVFESDREGKEQLYVM-QSNGSDQKRI 341 +AS++PD + +V ESD EG + + G + R+ Sbjct: 112 MRVLPLDGKSPAVPLHPPRARARNASWAPDGTWLVAESDAEGFSDVVRLEPREGGPEVRL 171 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPS 400 +Q + F+P SP G +AF + V DGS ER L + + P WSP Sbjct: 172 TQVPQG-CFEPAVSPDGKEVAFVCSREGDPEVYVANADGSGERRLTFFHHEDRTPKWSPD 230 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT---PAYASDPQWVG 444 G+ L+ + + +LY + +G + ++ + W Sbjct: 231 GKWLVIVSDR--ERKDRLYFLRPDGSDLRAVSGESFEGDEREAAWSP 275 >gi|282890326|ref|ZP_06298854.1| hypothetical protein pah_c016o029 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499708|gb|EFB41999.1| hypothetical protein pah_c016o029 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 459 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 79/409 (19%), Positives = 157/409 (38%), Gaps = 37/409 (9%) Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 K++ ++ DL + + + S + +T + W +L Q ++ + ++ Sbjct: 61 KKLTSILQFDLNHNGMTYVCSSEKKWNALTKNPLQFTEEQWQNLPFQGIIKLFLNQQ--- 117 Query: 123 RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--- 179 L E L D K+ G + RK+ H I+D +Y+++ + G SR+L+ Sbjct: 118 YLSGEIALKDSHAIKRFEGLALSGNLNDDRKVMHQIADTLYKALFHQPGIATSRVLYTVK 177 Query: 180 -VSESVVSGIIKNSLCVMDRDGANIRYLTPSR--------DQILFEPRFSPNQQKVAYAT 230 S + + D DG N R LT + I +P FS + + Y + Sbjct: 178 TPDRSTQEKKWISEIWEADYDGYNPRKLTTHKTVGYCVTPSYIPAKPGFS-SGSMI-YTS 235 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD-- 288 Y + ++Y+ +R+ R L P S + D++ Sbjct: 236 YKNGQP-KIYVAQVNEG-IGRRLNYVRGNQLMPTVSPQRDQIAFICDVGGNPDLFIQPFS 293 Query: 289 ---LQSNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD------- 337 ++ + + + ++SPD +I F S+++G ++Y++ + Sbjct: 294 IEKGAEGKPRQIFSCGQSVQGTPTFSPDGKKIAFASNKDGSPRVYILDIPKENVLLKDIK 353 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPT 396 K I++ S P WSP G IA++ + I V +E+ + + + P+ Sbjct: 354 PKLITKYSRES-TAPSWSPDGTKIAYSSLTQGTRQIWVYDLRKQEEKQITFGSGHKENPS 412 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 WSP+ + LI+ + LY + L N + + + P W G Sbjct: 413 WSPNSKMLIY--NCTDSQSNCLYLVGLQNSKPTKVGASEGEKHYPSWGG 459 >gi|171321510|ref|ZP_02910451.1| translocation protein TolB [Burkholderia ambifaria MEX-5] gi|171093218|gb|EDT38425.1| translocation protein TolB [Burkholderia ambifaria MEX-5] Length = 219 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 5/217 (2%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + VY+ D R + + + AP +S + +++ IY+V+ Sbjct: 4 ERKKPIVYIHDLPTGRRY-MVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNANGG 62 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG---SDQKRISQDKEASY 349 RLT + I+ YSPD I F SDR G Q+Y M + G +R++ + Sbjct: 63 GLRRLTQSSSIDTEPYYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYN- 121 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 P SP G L+A+ +G F + V + + ++P+++ +G+ L+++ + Sbjct: 122 TSPRISPDGKLLAYISRTGGGFKLYVQDLQTGAANAITNTNRDESPSFAANGQYLLYATQ 181 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 G D + + L +P W FM Sbjct: 182 SGGRNVLAAVPSDGSAPPQILSVQGGSVREPSWGPFM 218 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 9/201 (4%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 RY+ + P +SP+ +A A + ++Y ++ +R+ S+ P Sbjct: 20 RYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNT-QIYTVNANGGGL-RRLTQSSSIDTEP 77 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQS---NATERLTNTLFINISASYSPDSSQIVFES 320 +S +G+ + + A IY + Q A +R+T T N S SPD + + S Sbjct: 78 YYSPDGRWIYFTSDRGGAPQIYRMPAQGESAGAAQRVTFTGSYNTSPRISPDGKLLAYIS 137 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 G +LYV I+ P ++ G + + SG + + + DG Sbjct: 138 RTGGGFKLYVQDLQTGAANAITNTNR--DESPSFAANGQYLLYATQSGGRNVLAAVPSDG 195 Query: 381 SQERLL--VEDSNLQAPTWSP 399 S + V+ +++ P+W P Sbjct: 196 SAPPQILSVQGGSVREPSWGP 216 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 5/171 (2%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM--DTR 245 + ++ +G +R LT S I EP +SP+ + + + + D ++Y M Sbjct: 49 TGNTQIYTVNANGGGLRRLTQSSS-IDTEPYYSPDGRWIYFTS-DRGGAPQIYRMPAQGE 106 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 A +R+ S +PR S +GK + +Y DLQ+ A +TNT + Sbjct: 107 SAGAAQRVTFTGSYNTSPRISPDGKLLAYISRTGGGFKLYVQDLQTGAANAITNTN-RDE 165 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 S S++ + +++ + G+ L + S+GS +I + S +P W P Sbjct: 166 SPSFAANGQYLLYATQSGGRNVLAAVPSDGSAPPQILSVQGGSVREPSWGP 216 Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 10/170 (5%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 ++ R++ + S D + + G + I F S+ + I + GA Sbjct: 56 TVNANGGGLRRLTQSSSIDTEPYYSPD-GRW---IYFTSDRGGAPQIYRMPAQGESAGAA 111 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R PR SP+ + +AY + ++Y+ D + A R + Sbjct: 112 QRVTFTGS--YNTSPRISPDGKLLAYIS-RTGGGFKLYVQDLQTGAANAITNTNR--DES 166 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSP 311 P F++NG+ L + Q + +V +A ++ + ++ S+ P Sbjct: 167 PSFAANGQYLLYATQSGGRNVLAAVPSDGSAPPQILSVQGGSVREPSWGP 216 >gi|148977419|ref|ZP_01814019.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] gi|145963371|gb|EDK28636.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] Length = 246 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M L L V + HA +++ + P++I ++ + L VS V++ Sbjct: 1 MLKKLLLSFVFVIATSSQFAHAALELVITDGINSARPIAIVPFRWEGAEPLPHDVSAVIA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DLQRS F+ ++ Q + + F W +LG L+TG + K + + V ++L Sbjct: 61 SDLQRSGKFSPVATSKMPQTPYSETEV-NFDAWTNLGVDSLLTGSITKNAEGQYVVNYQL 119 Query: 131 WDVKDRK---------------------QIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 D+ + + KK R+ AH ISD +Y+ +TGE Sbjct: 120 IDIVRGQLTKGQSRALSDEGQLVLSKDHVLFNKKATVPGNRLREYAHRISDLVYEELTGE 179 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 KG F +RI +V + L V D DG N R + S+ + + Sbjct: 180 KGAFLTRISYVVVN-DKDKYPYQLRVADYDGFNERLVLRSKQPLCLQ 225 >gi|260062320|ref|YP_003195400.1| tolB protein [Robiginitalea biformata HTCC2501] gi|88783882|gb|EAR15053.1| tolB protein [Robiginitalea biformata HTCC2501] Length = 303 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 125/282 (44%), Gaps = 21/282 (7%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +I FV++ + + +MD DGAN LT D + F P +S + +++ + Sbjct: 31 GSGKIAFVTDRDGNP----EVYIMDGDGANPENLTR-HDSLDFSPSWSADGTSLSFYSKR 85 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQS 291 D + +Y MD + R R+ N + + P S +G + L +D + ++Y +D Sbjct: 86 DGNA-EIYRMDLQT-RQLTRLTNHPATDVLPVPSPDGSQILFMSDRDSLSRNVYVMDKDG 143 Query: 292 NATERLTNTLFINISASYSPDSSQIVFE------SDRE--GKEQLYVMQSNGSDQKRISQ 343 + +LT S +SPD SQI F SD G ++++M + G KR++ Sbjct: 144 SGIRQLTRNAAYEESPEWSPDGSQIAFTRQLRDSSDTSHAGNGEIFLMDAQGGGVKRLT- 202 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGR 402 DKE +SP G IAF +++ + + DG+ + L D+ +P WSP G Sbjct: 203 DKEGYDSGAKFSPDGSKIAFYGAQEDQWDLYTINADGTGLQNLTNDAIECYSPDWSPDGE 262 Query: 403 SLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWV 443 L+++ G ++ I++ L T P W Sbjct: 263 WLVYTAGSKG--NYNIWKINIRTKERVRLTRTSGRNEAPSWG 302 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 21/245 (8%) Query: 216 EPRFSPNQ-----QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +P S +Q K+A+ T D + VY+MD P+ + S+ +P +S++G Sbjct: 20 KPGVSADQAETGSGKIAFVTDRDGNP-EVYIMDGD-GANPENLTRHDSLDFSPSWSADGT 77 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLY 329 ++D +IY +DLQ+ RLTN ++ SPD SQI+F SDR+ +Y Sbjct: 78 SLSFYSKRDGNAEIYRMDLQTRQLTRLTNHPATDVLPVPSPDGSQILFMSDRDSLSRNVY 137 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGS 381 VM +GS ++++++ A P WSP G IAFT+ I +M G Sbjct: 138 VMDKDGSGIRQLTRNA-AYEESPEWSPDGSQIAFTRQLRDSSDTSHAGNGEIFLMDAQGG 196 Query: 382 QERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASD 439 + L + + +SP G + F ++ LY+I+ +G + L N Sbjct: 197 GVKRLTDKEGYDSGAKFSPDGSKIAFYGAQEDQW--DLYTINADGTGLQNLTNDAIECYS 254 Query: 440 PQWVG 444 P W Sbjct: 255 PDWSP 259 >gi|32265933|ref|NP_859965.1| translocation protein TolB [Helicobacter hepaticus ATCC 51449] gi|67461999|sp|Q7VJ16|TOLB_HELHP RecName: Full=Protein tolB; Flags: Precursor gi|32261982|gb|AAP77031.1| Acetyl esterase TolB [Helicobacter hepaticus ATCC 51449] Length = 419 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 73/402 (18%), Positives = 162/402 (40%), Gaps = 30/402 (7%) Query: 34 AFVKVATNSANYSPVS-IAFTKFVSID-ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKI 91 A +++ N + + I + S + + G KV ++++ DL+ S F + Sbjct: 20 ATLEIVK---NTNKIPYIVVERLDSENADFGAKVLKMLAADLKVSGHFQVYDGS------ 70 Query: 92 TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP-AS 150 N +S ++D+ +L +V K + L L+D+ K+I K + + Sbjct: 71 VNKNSEVAYKDYADKKIDLLAQIKVSKSS-NSLTGTISLYDINTSKRIYVKDYTENDVKR 129 Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 + IAH + D+ I ++ R++ +S+ SG + + + D + + Sbjct: 130 FPFIAHRMCIDVNSYIQAPSIEWMQRLVVLSQYTTSGN--SEILIADYTLTYQKVVVKG- 186 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + P++ ++Q+ Y T D+ + + + +G+ + + S NG+ Sbjct: 187 -GLNIFPKWVDSKQESIYYTKYL-DVPTILKHNLTTGHIEQLVGS-EGIAVVSDVSKNGE 243 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 ++S+ D+Y + +S RLTN I++ + + +I+F SDR G +++ Sbjct: 244 NLILSLSPTALSDLYLYNTKSKNLRRLTNYSGIDVDGKFVNNEKEIIFVSDRLGYPNIFM 303 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------FAIGVMKKD-GSQE 383 M+ +G +++ + + G +T F + ++ GS Sbjct: 304 MRLDGGGTEQVVLHGRNN---SAVTSNGKYAVYTSRETNNEFGANTFNLYLISLAPGSNY 360 Query: 384 -RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 R L Q P +S G ++++ + + + ID N Sbjct: 361 IRRLTASGKNQMPKYSNDGGTIMYLKYYKAQSALGIIRIDYN 402 >gi|224418200|ref|ZP_03656206.1| translocation protein TolB [Helicobacter canadensis MIT 98-5491] gi|253827527|ref|ZP_04870412.1| translocation protein TolB precursor [Helicobacter canadensis MIT 98-5491] gi|253510933|gb|EES89592.1| translocation protein TolB precursor [Helicobacter canadensis MIT 98-5491] Length = 426 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 85/431 (19%), Positives = 180/431 (41%), Gaps = 33/431 (7%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVV 69 KI L+ L F +I A ++V N + ++ D E KV +++ Sbjct: 3 KICFLFLMSLSFVFANQNIDATLEVVKKFGN---LPNILVQYTGKDYNQREYTLKVFKML 59 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVL--VTGRVIKEGKDRLRVE 127 DL+ + F + + + F ++ ++ V+ VI++G L V Sbjct: 60 IADLKVTGHFAVQEGEGL-----SGAMAINFDEYRKSKVDLVANVSAEVIRDG---LIVN 111 Query: 128 FRLWDVKDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 +L+DV ++ K++ SS ++ +AH ++ DI I D+ R++ VS S Sbjct: 112 LQLYDVNAGNLVLNKEYKSSQLPAYPFLAHKLAVDINDYIKAPSVDWMQRMVVVSYYTKS 171 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ + D L + P+++ +Q Y T + ++ D Sbjct: 172 G--ESEIISSDYTLTYKNTLISG--GLNIFPKWANEEQSAFYYTKYLDKP-TLFKFDLIT 226 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 K+I + M++A S + R L+++ +E DIY DL + ++LTN I++S Sbjct: 227 GEN-KQILSSEGMLVASDVSKDSNRLLLTMAPNEQADIYLYDLSNGTLKKLTNYRGIDVS 285 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 A++ D +++F SDR G ++ + +G + Q + + G+ I ++ Sbjct: 286 ANFIEDEKRVMFISDRLGYPNVFAISVDGESAGSVEQMVFHGRNNNAANAYGNYIVYSSR 345 Query: 367 S------GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 F + ++ R L + Q P ++ G ++++ + ++ + + Sbjct: 346 ETSEEFGSNTFNLYLVSTKSDFIRRLSANGVNQLPRFAKDGETIMYIKHENNQSALGIIR 405 Query: 421 IDLNGRNETLI 431 ++ N+TL+ Sbjct: 406 LN---YNKTLL 413 >gi|156744050|ref|YP_001434179.1| WD40 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235378|gb|ABU60161.1| WD40 domain protein beta Propeller [Roseiflexus castenholzii DSM 13941] Length = 572 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 3/225 (1%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P Q ++ +A ++ + +P +S + + + ++ + Sbjct: 32 PGQGRILFAAARGDNGAFDIFSADLAGERAANLTADPYPDRSPSWSPDANHVVFASRRGD 91 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D+Y + + RLTN + S+SPD ++ F S R+G ++Y + G D +R Sbjct: 92 NWDLYVMRADGSDLRRLTNHPAYDGEPSWSPDGRRVAFTSMRDGNPEIYTLDLIGGDARR 151 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 I+ A+ P WSP G IAFT + I + + L + +P WSP Sbjct: 152 ITT-HPAADAQPTWSPDGRRIAFTSWRDGNQEIYIADAESGAVINLTNHPAPDHSPAWSP 210 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G + F +DG + + + G DP W Sbjct: 211 DGGRIAFISDRDGGGNLHIRDL-ITGEELRAGPDNLGLRDPAWTP 254 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 113/279 (40%), Gaps = 14/279 (5%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 RILF + +G + D G LT P +SP+ V +A+ Sbjct: 32 PGQGRILFAAARGDNGAF--DIFSADLAGERAANLTAD-PYPDRSPSWSPDANHVVFAS- 87 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D +Y+M +R+ N + P +S +G+R + +D +IY++DL Sbjct: 88 RRGDNWDLYVMRAD-GSDLRRLTNHPAYDGEPSWSPDGRRVAFTSMRDGNPEIYTLDLIG 146 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 R+T + ++SPD +I F S R+G +++Y+ + ++ + A Sbjct: 147 GDARRITTHPAADAQPTWSPDGRRIAFTSWRDGNQEIYIADAESGAVINLT-NHPAPDHS 205 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFS--- 407 P WSP G IAF + + G + R ++ L+ P W+P G + + Sbjct: 206 PAWSPDGGRIAFISDRDGGGNLHIRDLITGEELRAGPDNLGLRDPAWTPGGGLMAVAPWA 265 Query: 408 ---RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 R+ G L+S + G + + YA DP W Sbjct: 266 LGGRRFFSRQGVALFSPGMPGGTFVVASLHGYA-DPSWS 303 >gi|115376904|ref|ZP_01464125.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|310825361|ref|YP_003957719.1| tol-pal system beta propeller repeat protein [Stigmatella aurantiaca DW4/3-1] gi|115366083|gb|EAU65097.1| protein TolB [Stigmatella aurantiaca DW4/3-1] gi|309398433|gb|ADO75892.1| Tol-pal system beta propeller repeat protein [Stigmatella aurantiaca DW4/3-1] Length = 349 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 10/271 (3%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +L ++ +V+G + + DG L P R + P +SP+ + + A D Sbjct: 80 LLVIAARMVNGFHLEQMRLQPLDGGEPVALHPPRAR-TRNPSWSPDGRWLV-AESDARSF 137 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + ++ + + + + P S +G+ ++ +IY + R Sbjct: 138 SDLVRLEPKAGTQEQPLTQVKEGCFEPAVSPDGREVAFVSSREGDPEIYVMKADGTDERR 197 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWS 355 +T + +SPD + F S+REG+E+ ++++ +G+ + +S + + + WS Sbjct: 198 ITAFHQEDREPRWSPDGQWLSFISNREGRERYFLVRPDGTSLRAVSGEATKLDERELAWS 257 Query: 356 PQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD 413 P + F + E K + V DG L + S AP WSP G+ L+F ++ GD Sbjct: 258 PDSKKVVFVERLPEAKSRLWVAAVDGGAPVALTDGRSRDDAPAWSPDGKYLVFVAERQGD 317 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L+ + +G +T + T A P W+ Sbjct: 318 V--DLWLMRADGSGQTRLTT---AKGPDWLP 343 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 7/179 (3%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + FVS + VM DG + R +T + EPR+SP+ Q +++ + + Sbjct: 173 VAFVSSREGDP----EIYVMKADGTDERRITAFHQE-DREPRWSPDGQWLSFISNREGRE 227 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATE 295 + + +S + K+ + + EA ++ + A Sbjct: 228 RYFLVRPDGTSLRAVSGEATKLDERELAWSPDSKKVVFVERLPEAKSRLWVAAVDGGAPV 287 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 LT+ + + ++SPD +VF ++R+G L++M+++GS Q R++ K + P W Sbjct: 288 ALTDGRSRDDAPAWSPDGKYLVFVAERQGDVDLWLMRADGSGQTRLTTAK-GPDWLPRW 345 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 20/190 (10%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIVFESDRE----GKE 326 ++ + D++ V S +LT + + + SPD ++ + R E Sbjct: 36 IAFISERADQKDVWLVKP-SGEETQLTKSPGEDDFPAAPSPDGKALLVIAARMVNGFHLE 94 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQER 384 Q+ + +G + + A +P WSP G + + F+ + + K G+QE+ Sbjct: 95 QMRLQPLDGGEPVAL-HPPRARTRNPSWSPDGRWLV-AESDARSFSDLVRLEPKAGTQEQ 152 Query: 385 LLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-------PAY 436 L + P SP GR + F ++GD ++Y + +G +E I P + Sbjct: 153 PLTQVKEGCFEPAVSPDGREVAFVSSREGD--PEIYVMKADGTDERRITAFHQEDREPRW 210 Query: 437 ASDPQWVGFM 446 + D QW+ F+ Sbjct: 211 SPDGQWLSFI 220 >gi|301058341|ref|ZP_07199374.1| putative Tol-Pal system beta propeller repeat protein TolB [delta proteobacterium NaphS2] gi|300447577|gb|EFK11309.1| putative Tol-Pal system beta propeller repeat protein TolB [delta proteobacterium NaphS2] Length = 205 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 6/201 (2%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + A +R+ + + ++ NGK +++ DI+++DLQ +L I++ Sbjct: 8 VTGALRRLSGRSGLNIGACWAPNGKELALTMSHKGNPDIFTIDLQGKILRQLVEHWGIDV 67 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD +++ F S+R G Q+Y+++ + R++ + + P WS + IAF Sbjct: 68 SPAFSPDGTKLAFVSNRSGSPQIYLLEISSGRVDRLTYEGSYN-TSPAWSAL-NRIAFVG 125 Query: 366 FSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + F I M DGS + L + N + P WSP GR + FS + G +Y ++ N Sbjct: 126 KTDGHFDIFTMAPDGSGMKRLTADSGNNEDPCWSPDGRYIAFSSDRTG--AYHIYMMNAN 183 Query: 425 GRNETLINTP-AYASDPQWVG 444 GR + I + P W Sbjct: 184 GRTQRRITFEKGKQTSPSWGP 204 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 5/194 (2%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 R + ++PN +++A T + ++ +D + + +++ + ++P FS Sbjct: 15 LSGRSGLNIGACWAPNGKELA-LTMSHKGNPDIFTIDLQ-GKILRQLVEHWGIDVSPAFS 72 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G + + + IY +++ S +RLT N S ++S ++I F +G Sbjct: 73 PDGTKLAFVSNRSGSPQIYLLEISSGRVDRLTYEGSYNTSPAWSAL-NRIAFVGKTDGHF 131 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERL 385 ++ M +GS KR++ D + DP WSP G IAF+ + I +M +G +Q R+ Sbjct: 132 DIFTMAPDGSGMKRLTADS-GNNEDPCWSPDGRYIAFSSDRTGAYHIYMMNANGRTQRRI 190 Query: 386 LVEDSNLQAPTWSP 399 E +P+W P Sbjct: 191 TFEKGKQTSPSWGP 204 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 5/171 (2%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S + +D G +R L I P FSP+ K+A+ + ++YL++ Sbjct: 39 SHKGNPDIFTIDLQGKILRQLVE-HWGIDVSPAFSPDGTKLAFVSNRSGSP-QIYLLEIS 96 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R R+ S +P +S+ R + D DI+++ + +RLT N Sbjct: 97 SGR-VDRLTYEGSYNTSPAWSAL-NRIAFVGKTDGHFDIFTMAPDGSGMKRLTADSGNNE 154 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +SPD I F SDR G +Y+M +NG Q+RI+ +K P W P Sbjct: 155 DPCWSPDGRYIAFSSDRTGAYHIYMMNANGRTQRRITFEK-GKQTSPSWGP 204 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LY+ +R+S + W+P G +A T I + G R LV Sbjct: 2 LYLRDLVTGALRRLS-GRSGLNIGACWAPNGKELALTMSHKGNPDIFTIDLQGKILRQLV 60 Query: 388 EDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 E + +P +SP G L F + G L I +GR + L +Y + P W Sbjct: 61 EHWGIDVSPAFSPDGTKLAFVSNRSGSPQIYLLEIS-SGRVDRLTYEGSYNTSPAWSAL 118 >gi|158339964|ref|YP_001521134.1| WD-40-like beta propeller repeat-containing protein [Acaryochloris marina MBIC11017] gi|158310205|gb|ABW31820.1| WD40-like Beta Propeller, putative [Acaryochloris marina MBIC11017] Length = 344 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 12/227 (5%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +A+ D++ ++LM T KR+ +P +S +G R ++ D+Y Sbjct: 33 IAFTGEQDKNNRDIFLM-TADGSNRKRLTTHPGEDWSPVWSPDGTRLAFISDRNGQSDLY 91 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ------LYVMQSNGSDQK 339 ++L + RLT+ + ++SPDS I F S R+ +Q +Y++ S+ K Sbjct: 92 LINLDGSQLTRLTSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNTEIYLLNIKDSEIK 151 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WS 398 R++ + P WSP G I F++ + + +M +G++ + L +D N WS Sbjct: 152 RLT-EHVGEDSSPSWSPDGQQIVFSRKIQDNADLFLMTPEGTEFKQLTDDPNDDWNADWS 210 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 P G+ ++F+ + LY I+ +G N + L P + +W Sbjct: 211 PDGQQIVFTSGRSN--NVDLYVINADGSNLKRLTQDPEDENQGRWSP 255 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 17/276 (6%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +R+ F+S+ ++ L +++ DG+ + LT S +P +SP+ Q + + + D Sbjct: 76 TRLAFISDR----NGQSDLYLINLDGSQLTRLT-SHAARDEDPAWSPDSQHITFVSKRDA 130 Query: 235 DILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + Y + + D KR+ +P +S +G++ + S + + D++ + + Sbjct: 131 NQQHPYNTEIYLLNIKDSEIKRLTEHVGEDSSPSWSPDGQQIVFSRKIQDNADLFLMTPE 190 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 ++LT+ + +A +SPD QIVF S R LYV+ ++GS+ KR++QD E Sbjct: 191 GTEFKQLTDDPNDDWNADWSPDGQQIVFTSGRSNNVDLYVINADGSNLKRLTQDPE-DEN 249 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRK 409 WSP G IA+ S ++ + + +G+ + D L+ A W P+ ++F K Sbjct: 250 QGRWSPSGHRIAYISLSQNQWDLYTILPNGTGRTRVTNDDALELAFDWLPNSNKILFESK 309 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 +Y ++ G + + P W Sbjct: 310 DG------IYQANVIGSKKQQMTDNPKDGSPTWKPL 339 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 13/262 (4%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 ++ + + +M DG+N + LT + P +SP+ ++A+ + + Sbjct: 31 FVIAFTGEQDKNNRDIFLMTADGSNRKRLTT-HPGEDWSPVWSPDGTRLAFISDRNGQS- 88 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD------IYSVDLQS 291 +YL++ R+ + + P +S + + ++D IY ++++ Sbjct: 89 DLYLINLD-GSQLTRLTSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNTEIYLLNIKD 147 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + +RLT + + S S+SPD QIVF + L++M G++ K+++ D + Sbjct: 148 SEIKRLTEHVGEDSSPSWSPDGQQIVFSRKIQDNADLFLMTPEGTEFKQLTDDPNDDWNA 207 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKK 410 WSP G I FT + V+ DGS + L +D + WSPSG + + Sbjct: 208 -DWSPDGQQIVFTSGRSNNVDLYVINADGSNLKRLTQDPEDENQGRWSPSGHRIAYISLS 266 Query: 411 DGDTGSKLYSIDLNGRNETLIN 432 LY+I NG T + Sbjct: 267 QNQW--DLYTILPNGTGRTRVT 286 >gi|224438537|ref|ZP_03659457.1| translocation protein TolB [Helicobacter cinaedi CCUG 18818] gi|313144963|ref|ZP_07807156.1| protein tolB [Helicobacter cinaedi CCUG 18818] gi|313129994|gb|EFR47611.1| protein tolB [Helicobacter cinaedi CCUG 18818] Length = 417 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 162/405 (40%), Gaps = 31/405 (7%) Query: 31 SIHAFVKVATNSANYSPVS-IAFTKFVSID-ELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 +I A +++ N + + I + S + + G KV +++ DL+ S F Sbjct: 16 AIDATLEIVKNG---NKIPYIMVERLDSENADFGTKVLKMLVADLKVSGHFQADDGG--- 69 Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 N + + D+ +L +V K L L+D+ K I K + + Sbjct: 70 ---VNKSNDINYADYAEKKMDLLAQIKVAKSST--LTATLSLYDINTSKHIFTKTYTEND 124 Query: 149 -ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + +AH ++ DI I + R++ +S V SG + + + D + + Sbjct: 125 IKRFPFLAHNMTIDINSYIKAPSIQWMQRLVVLSRYVGSGS--SEILICDYTLTYQKVVV 182 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + P+++ ++Q+ Y T E + + + + + +G+ + + S Sbjct: 183 KG--GLNIFPKWADSKQESIYYTKYLE-VPTIVKHNLATGQIEQLVGS-EGVAIVSDVSK 238 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG+ ++S+ D+Y + +S RLTN I++ + D +I+F SDR G Sbjct: 239 NGENLILSLSPTALSDLYIFNTKSKNLRRLTNYSGIDVDGKFVNDEKEIIFVSDRLGYPN 298 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKD-G 380 +++M+ +G +++ + + G +T G F + ++ G Sbjct: 299 IFMMRLDGGGTEQVVLHGRNN---SAITSNGKYAVYTSRETNNEFGGNTFNLYLISLAPG 355 Query: 381 SQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S R L + Q P +S G S+++ + + + +D N Sbjct: 356 SNYIRRLTANGKNQMPKYSSDGGSIMYLKHYKNQSALGIIRVDYN 400 >gi|322379221|ref|ZP_08053612.1| translocation protein TolB [Helicobacter suis HS1] gi|322379706|ref|ZP_08054019.1| translocation protein TolB [Helicobacter suis HS5] gi|321147855|gb|EFX42442.1| translocation protein TolB [Helicobacter suis HS5] gi|321148361|gb|EFX42870.1| translocation protein TolB [Helicobacter suis HS1] Length = 413 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 79/420 (18%), Positives = 167/420 (39%), Gaps = 32/420 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+I L L L+ T A + + V+I + + D K++ +++ D Sbjct: 1 MRI-LWLFLLCYSSLLAT--DATLDIVKTIGKLPKVAI---FYQNTDPYLKKIARLLASD 54 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F ++ + + P + + G Q+LV + ++ L+D Sbjct: 55 LKISGHFEVMGAPQIQTQ------TPSYDSLATKGIQILV----EIKADQNHQIHATLYD 104 Query: 133 VKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 + +R K + F++ A + IAH ++ D I + R++ ++ + G+ Sbjct: 105 IANRSIKASKDYEFNTKALYPFIAHRVAIDTNALIQAPSIAWMQRMVVFAKYLSPGVT-- 162 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSP-NQQKVAYATYDDEDILRVYLMDTRIDRAP 250 S+ V D + + + + + P+++ +Q + + Y E + Y + T Sbjct: 163 SIVVADYTLSYQQEIIK-NNLLNIFPKWANADQSAIYFTQYLREPTIIKYDIRT---GKS 218 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + I M S NG + L+S+ D DI+ D + +RLT I++ ++ Sbjct: 219 EAITQSSGMAAVSSVSKNGDKLLLSLAPDGQTDIFFYDTLKKSLKRLTTYSGIDVMGTFV 278 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + +VF SDR G +Y+ + + + Q + + + GD I + + Sbjct: 279 DNEKAMVFVSDRSGYPNIYLKKLRENAP--VEQVVFYAKNNDSITASGDNIVYVSREDKD 336 Query: 371 ------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ R L Q P +S G++++F +K + + +D N Sbjct: 337 ANGQSTFNLHLITLKSDYVRRLTVSGVNQMPRFSYDGKAVMFLKKAASQSALGVILLDSN 396 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 20/192 (10%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS----------RDQ 212 Y TG+ + S VS L + DG + + Sbjct: 211 YDIRTGKSEAITQSSGMAAVSSVSKNGDKLLLSLAPDGQTDIFFYDTLKKSLKRLTTYSG 270 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 I F N++ + + + D +YL R + +++ + + S G Sbjct: 271 IDVMGTFVDNEKAMVFVS-DRSGYPNIYLKKLRENAPVEQVVFYAKNNDSITAS--GDNI 327 Query: 273 LISVQKD------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + ++D +++ + L+S+ RLT + +N +S D ++F + Sbjct: 328 VYVSREDKDANGQSTFNLHLITLKSDYVRRLTVS-GVNQMPRFSYDGKAVMFLKKAASQS 386 Query: 327 QLYVMQSNGSDQ 338 L V+ + + Sbjct: 387 ALGVILLDSNQS 398 >gi|242310687|ref|ZP_04809842.1| translocation protein TolB [Helicobacter pullorum MIT 98-5489] gi|239523085|gb|EEQ62951.1| translocation protein TolB [Helicobacter pullorum MIT 98-5489] Length = 426 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 78/429 (18%), Positives = 173/429 (40%), Gaps = 29/429 (6%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVV 69 KI + +LL + F I A ++V N + ++ D E ++ +++ Sbjct: 3 KICVWVLLCVNCLFANQEIDATLEVVKKFGN---LPNILVQYSGKDYNQREYTLRIFKML 59 Query: 70 SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFR 129 DL+ + F + + + + F ++ ++ L V + Sbjct: 60 VADLKVTGHFTVQEDGNIAN-----EMVLNFDEYRKAKIDLIARVSAEILQDG-LVVNLQ 113 Query: 130 LWDVKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 L+D + K++ +S A + +AH ++ DI I D+ RI+ VS G Sbjct: 114 LYDANSGTLALSKEYKNSRAETYPFLAHKLAIDINDYIQAPNVDWMERIVVVSYYTKPG- 172 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 ++ + + D L + P+++ N+Q+ A+ D ++ D + Sbjct: 173 -ESEILLSDYTLTYKNSLIKG--GLNIFPKWA-NEQQNAFYYTKYLDKPTLFKYDLTTGQ 228 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + I + M++A S + + L+++ +E DI+ D+ S +LTN I++S + Sbjct: 229 NTQIISS-EGMLVASDVSKDSTKILLTMAPNEQADIFLYDIPSAKLTKLTNYRGIDVSGN 287 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--- 365 + D +++F SDR G ++ + G + Q + + G+ I ++ Sbjct: 288 FIEDEKRVMFISDRLGYPNVFAISVEGEANGSLEQMVFHGRNNNAANAFGEYIVYSSRET 347 Query: 366 ---FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 FS F + ++ R L + Q P +S G ++++ + + + + ++ Sbjct: 348 NEDFSRNTFNLYLVSTKSDFIRRLSANGINQLPRFSKDGETIMYVKHESNQSALGIIRLN 407 Query: 423 LNGRNETLI 431 N+TL+ Sbjct: 408 ---YNKTLL 413 >gi|296273864|ref|YP_003656495.1| TolB domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098038|gb|ADG93988.1| TolB domain protein [Arcobacter nitrofigilis DSM 7299] Length = 422 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 77/418 (18%), Positives = 169/418 (40%), Gaps = 22/418 (5%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 K+ L L+ I F ++ A +++ S N + I+ + E K+ +++ +DL Sbjct: 3 KVFFLLTLICINLF---AVDASMEIIKKSDNLPKIEISAASDTANIEYVNKIKKLLIQDL 59 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 S F +S + +NP+ + + G + + + + L + +L+D Sbjct: 60 LVSGHFEAMSSNEKISFSSNPNMLG----LKNKGIDLFLNISIKESSFGGLNLNIKLFDN 115 Query: 134 KDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + I+ K SS + +AH + I + + D+ + FV SV + + Sbjct: 116 NLMQLILEKTISSSQLDRYPFVAHRAAIIINKHLNAPSIDWMDK--FVIFSVYKDAKEAN 173 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P+++ ++Q Y T ++ + R Sbjct: 174 IVIGDYTLTFQKTIIKG--GLNIFPKWANDKQDSFYYTSYRGSSPQLIKYNLYT-RKVDY 230 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + MI+ + +G + LI+ + DIY D ++ ERLTN I++ A ++ + Sbjct: 231 IMKSQGMIVCSDVNKDGSKLLITASPEGQPDIYLYDTKNKRKERLTNYKGIDVGAHFAEN 290 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------F 366 ++IVF SDR ++ + NG +R+ + + + + ++ F Sbjct: 291 DTKIVFVSDRLNHPNIFSKKINGRGVERLVYHGKNNSSATTF---DSYVVYSSRETQNEF 347 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + F + ++ R L + Q P +S G S++F + + + ++ N Sbjct: 348 TDNTFNLYLISLKSDFIRRLTTNGVNQFPKFSNDGESVLFIKNYQNRSNVGIIRLNYN 405 >gi|320160892|ref|YP_004174116.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1] gi|319994745|dbj|BAJ63516.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1] Length = 287 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 7/253 (2%) Query: 195 VMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + D +N + L ++ F ++P+ + +A+ + D L ++++DT+ Sbjct: 39 IWMLDTSNDKLLNLSNKSSDDFWQTWAPDGRYLAFTS-DRSGNLDIWILDTQ-KEVVFNY 96 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 N P +S +GK + ++ DI+ ++ + LT + ++SPDS Sbjct: 97 TNNPEDEGWPAWSPDGKYLAYASNREGTYDIWRMNSDGSNRVNLTPGDGDDGLPAWSPDS 156 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +IVF S+R G LY+ NG + ++I+ D EA P WSP G IAF I Sbjct: 157 QRIVFSSNRNGNYDLYIASVNGGELEQITSD-EADDIMPAWSPDGKKIAFVSKRDGNSEI 215 Query: 374 GVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + L N + P W P G ++F ++ D +YS+ +G + Sbjct: 216 YLYDIASKGVTNLTKNPYNDETPAWYPDGSRILFVSER-FDNQWDVYSMKPDGSEVRRLT 274 Query: 433 TPA-YASDPQWVG 444 P W Sbjct: 275 HDELQEFHPMWRP 287 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y T+ M + + N S ++ +G+ + + +DI+ + Sbjct: 27 YLTFTIRAQNSEIWMLDTSNDKLLNLSNKSSDDFWQTWAPDGRYLAFTSDRSGNLDIWIL 86 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D Q TN ++SPD + + S+REG ++ M S+GS++ ++ + Sbjct: 87 DTQKEVVFNYTNNPEDEGWPAWSPDGKYLAYASNREGTYDIWRMNSDGSNRVNLTP-GDG 145 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIF 406 P WSP I F+ + + + +G + E++ ++++ P WSP G+ + F Sbjct: 146 DDGLPAWSPDSQRIVFSSNRNGNYDLYIASVNGGELEQITSDEADDIMPAWSPDGKKIAF 205 Query: 407 SRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 K+DG S++Y D+ + T L P P W Sbjct: 206 VSKRDG--NSEIYLYDIASKGVTNLTKNPYNDETPAWYP 242 >gi|313141735|ref|ZP_07803928.1| translocation protein TolB [Helicobacter canadensis MIT 98-5491] gi|313130766|gb|EFR48383.1| translocation protein TolB [Helicobacter canadensis MIT 98-5491] Length = 417 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 82/422 (19%), Positives = 176/422 (41%), Gaps = 33/422 (7%) Query: 23 LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDV 78 L F +I A ++V N + ++ D E KV +++ DL+ + Sbjct: 3 LSFVFANQNIDATLEVVKKFGN---LPNILVQYTGKDYNQREYTLKVFKMLIADLKVTGH 59 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVL--VTGRVIKEGKDRLRVEFRLWDVKDR 136 F + + + F ++ ++ V+ VI++G L V +L+DV Sbjct: 60 FAVQEGEGL-----SGAMAINFDEYRKSKVDLVANVSAEVIRDG---LIVNLQLYDVNAG 111 Query: 137 KQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 ++ K++ SS ++ +AH ++ DI I D+ R++ VS SG ++ + Sbjct: 112 NLVLNKEYKSSQLPAYPFLAHKLAVDINDYIKAPSVDWMQRMVVVSYYTKSG--ESEIIS 169 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D L + P+++ +Q Y T + ++ D K+I + Sbjct: 170 SDYTLTYKNTLISG--GLNIFPKWANEEQSAFYYTKYLDKP-TLFKFDLITGEN-KQILS 225 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 M++A S + R L+++ +E DIY DL + ++LTN I++SA++ D + Sbjct: 226 SEGMLVASDVSKDSNRLLLTMAPNEQADIYLYDLSNGTLKKLTNYRGIDVSANFIEDEKR 285 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GE 369 ++F SDR G ++ + +G + Q + + G+ I ++ Sbjct: 286 VMFISDRLGYPNVFAISVDGESAGSVEQMVFHGRNNNAANAYGNYIVYSSRETSEEFGSN 345 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 F + ++ R L + Q P ++ G ++++ + ++ + + ++ N+T Sbjct: 346 TFNLYLVSTKSDFIRRLSANGVNQLPRFAKDGETIMYIKHENNQSALGIIRLN---YNKT 402 Query: 430 LI 431 L+ Sbjct: 403 LL 404 >gi|225165753|ref|ZP_03727545.1| periplasmic component of the Tol biopolymer transport system-like protein [Opitutaceae bacterium TAV2] gi|224800006|gb|EEG18443.1| periplasmic component of the Tol biopolymer transport system-like protein [Opitutaceae bacterium TAV2] Length = 410 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 130/315 (41%), Gaps = 16/315 (5%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY--------QS 165 GR + V F + + + ++P + +A T + ++ Sbjct: 75 GRYRRVASGGFDVRFTAVGGNQVQVSVTRGAEATPVVSQVVAGTSARSALLAAADVAVKA 134 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +G G FN+R+ F+SE K + D IR +T + + PR+SP+ Q Sbjct: 135 TSGLNGYFNTRLAFISER----SGKPEVYTSDLFAGEIRQITHD-NALAVSPRWSPDGQG 189 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + Y +Y ++ MD + + +F+ R+S NG + + + + ++Y Sbjct: 190 IIYTSYFRRGFPDIFKMDLNTLQRSTLV-SFKGTNTGARYSPNGAQIAMVLSGEGNPELY 248 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D Q RLT T + S +SPD SQ+VF SD G QLYVM + G R+ + Sbjct: 249 ISDSQGRGVRRLTRTASVEASPCFSPDGSQLVFTSDAAGGPQLYVMSTAGGGASRLPTNL 308 Query: 346 EASYFDPVWS-PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRS 403 +P WS + IAFT G F I V ++ + N P+W GR Sbjct: 309 SRYCAEPDWSRANPNKIAFTVRIGSGFQIAVYDMSTRSAAVVSKAPNDAVEPSWLADGRH 368 Query: 404 LIFSRKKDGDTGSKL 418 LI++++ + Sbjct: 369 LIYTQRSANKRSLHI 383 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 7/178 (3%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-REGKEQL 328 R ++ ++Y+ DL + ++T+ + +S +SPD I++ S R G + Sbjct: 144 TRLAFISERSGKPEVYTSDLFAGEIRQITHDNALAVSPRWSPDGQGIIYTSYFRRGFPDI 203 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + M N + + K + +SP G IA + + G R L Sbjct: 204 FKMDLNTLQRSTLVSFKGTNTGA-RYSPNGAQIAMVLSGEGNPELYISDSQGRGVRRLTR 262 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP--AYASDPQWV 443 ++++ +P +SP G L+F+ G G +LY + G + + T Y ++P W Sbjct: 263 TASVEASPCFSPDGSQLVFTSDAAG--GPQLYVMSTAGGGASRLPTNLSRYCAEPDWS 318 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 3/175 (1%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V+SG L + D G +R LT + + P FSP+ ++ + + D ++Y+M Sbjct: 238 VLSGEGNPELYISDSQGRGVRRLTRTAS-VEASPCFSPDGSQLVFTS-DAAGGPQLYVMS 295 Query: 244 TRIDRAPKRIGNFRSMILAPRFS-SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T A + N P +S +N + +V+ I D+ + + ++ Sbjct: 296 TAGGGASRLPTNLSRYCAEPDWSRANPNKIAFTVRIGSGFQIAVYDMSTRSAAVVSKAPN 355 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 + S+ D +++ K L+++ + +S + P Sbjct: 356 DAVEPSWLADGRHLIYTQRSANKRSLHILDTETGRSMLVSAGQLGQCSQASVWPN 410 >gi|291276672|ref|YP_003516444.1| putative protein tolB precursor [Helicobacter mustelae 12198] gi|290963866|emb|CBG39702.1| putative protein tolB precursor [Helicobacter mustelae 12198] Length = 418 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 68/420 (16%), Positives = 164/420 (39%), Gaps = 27/420 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M + L+ + S+ A + + + + + + D ++ V+ D Sbjct: 1 MSRIVISFLIFFQMLW--SVDATIDLVKTIQKTPSIQVTYLDNKNTD-FAQEIYRVLLGD 57 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 LQ + F ++ + P + ++ + + V+KE + ++V +L+D Sbjct: 58 LQVTGHF-------LVREGSKGRRNPDYTEFIQQKTDLYINIEVLKEDAN-IKVILKLFD 109 Query: 133 VKDRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 V + ++ K + A + +AH I+ D I D+ R +V S G +N Sbjct: 110 VNMQNLVLNKAYTLDDEALYPFVAHKIAIDANNYIKAPSIDWMKR--YVVLSANVGPRRN 167 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + D + + D + P+++ +Q Y T D + + + + Sbjct: 168 DILISDYTLTYRKVILN--DGLNVFPKWANAEQTEIYYTKITRDFPIIIKYNIYTGISSE 225 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 I R + + S +GK+AL+++ + DIY D + ++T I++S ++ Sbjct: 226 -ILRGRGLAIVSNVSKDGKKALMTLAPNGDPDIYLYDFDTKQRIQMTKYRGIDVSGNFID 284 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + + ++F SDR G ++ + + +++ + + ++ + + +T Sbjct: 285 NDTAMIFVSDRLGYPNIFTKKLQENAPIEQVVFHGKNNSSVTAYN---NYVVYTSRDTNN 341 Query: 371 ------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ R L + Q P +S G S++F + + + ++ N Sbjct: 342 EFGQNTFNLYLISMKSDFIRRLTTNGVNQMPKFSADGGSVMFIKNSGKQSALGIIRLNYN 401 >gi|40062542|gb|AAR37487.1| tolB protein, putative [uncultured marine bacterium 106] Length = 442 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 86/445 (19%), Positives = 176/445 (39%), Gaps = 38/445 (8%) Query: 10 ELNMKINLCLLLVLIGGFFPT---SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVS 66 +L +++ L+ +L G T S+ A + + PV + +K S + + + Sbjct: 24 QLKLRMRAGLVFLLFGLIMHTCGGSVSAIDYFEITNPKFIPVKVGLSKESSPEVVFLQ-- 81 Query: 67 EVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 V +L++ F I++ ++ + + D L+ + +G+ + V Sbjct: 82 NVFKTNLEKVLYFQFITESK--EEFDQSEKVIFHLDLELKSKPFLLKIMLWSQGE-KTPV 138 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 L+ V + RK+ ++D ++ G +G SRI + + Sbjct: 139 SKELFPVGTNQ------------DLRKLGLKLADWFVENTLGFEGVSTSRISY---TAQK 183 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + ++ + DG ++ + + +S + + Y T L Sbjct: 184 SNRRKNIFLSSFDGTVLKRFSYNLGSNNLS-SWSFDGNNILYTTLTRSSA---QLAIQPA 239 Query: 247 DRAPKRIGNFRS--MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R +I +F S L+ ++ +G+ L+++ K DIY+ L++ ++ + Sbjct: 240 KRLRAKILSFPSGFQPLSASWNLDGESILLTLMKQGNADIYNYHLENAQLNKIFAWKSLE 299 Query: 305 ISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S SPD +I F SD R + Q+Y+ N +R++ + P WSP G + Sbjct: 300 TSPQMSPDGRKIAFVSDSARPRRPQIYIHNLNTLKTERVTFKGNFN-SSPNWSPNGTQLI 358 Query: 363 FTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + F + + + +L N + P W+P+G+ ++FS KK KLY I Sbjct: 359 YERQEKGYFQLYIYTLSTRRHLQLTFGRFNSEKPDWAPNGKQIVFSAKK--KNVPKLYYI 416 Query: 422 DL-NGRNETLINTPAYASD--PQWV 443 GR + TP+ ++ P W Sbjct: 417 SSFGGRTIRVTKTPSNIAETNPVWS 441 >gi|167946735|ref|ZP_02533809.1| TolB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 286 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 5/196 (2%) Query: 69 VSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF 128 +S DL RS F ++ ++ ++ D + F+DW LG + LV G++ G V F Sbjct: 1 ISADLHRSGRFKVLPREDLLALPSSGDEV-EFKDWRILGVENLVVGQIQPNGPGGYIVRF 59 Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV-SESVVSG 187 +L+DV +Q+ G ++ + R AH ++D IY+ + G KG F +RI ++ S+ +G Sbjct: 60 QLFDVFRGEQLTGYSIPTTAPNLRSTAHHVADLIYEVLLGMKGAFATRIAYITSQQGANG 119 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + +L V D DG N + S + L P +SP+ +K+AY ++++ +Y+ + Sbjct: 120 EQQVALRVADADGHNPETIV-SSSEPLMSPAWSPDGRKIAYVSFENGRSA-IYMQEVYTG 177 Query: 248 RAPKRIGNFRSMILAP 263 ++I F+ + AP Sbjct: 178 -HRRKITEFKGINSAP 192 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 270 KRALISVQKDEA-----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 R + A + + D + E + ++ +S ++SPD +I + S G Sbjct: 106 TRIAYITSQQGANGEQQVALRVADADGHNPETIVSSSEPLMSPAWSPDGRKIAYVSFENG 165 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPV---WSPQGD 359 + +Y+ + +++I++ K + + WS GD Sbjct: 166 RSAIYMQEVYTGHRRKITEFKGINSAPGLVTGWSQAGD 203 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 313 SSQIVFESDREGKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +++I + + ++G L V ++G + + I E P WSP G IA+ F Sbjct: 105 ATRIAYITSQQGANGEQQVALRVADADGHNPETIVSSSE-PLMSPAWSPDGRKIAYVSFE 163 Query: 368 GEKFAIGVMKKDGSQERLLVE 388 + AI + + R + E Sbjct: 164 NGRSAIYMQEVYTGHRRKITE 184 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 359 DLIAFTKFSGE-----KFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 IA+ + A+ V DG + E ++ L +P WSP GR + + ++G Sbjct: 106 TRIAYITSQQGANGEQQVALRVADADGHNPETIVSSSEPLMSPAWSPDGRKIAYVSFENG 165 Query: 413 DTGSKLYSIDL-NGRNETLINTPAYASDP 440 S +Y ++ G + S P Sbjct: 166 R--SAIYMQEVYTGHRRKITEFKGINSAP 192 >gi|297183048|gb|ADI19193.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0130_20J24] Length = 441 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 88/446 (19%), Positives = 161/446 (36%), Gaps = 45/446 (10%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + LL+ LI S A S + PV + K ++ +V +V Sbjct: 27 FTKAAFVLLLMGLITSLCVRSAVAIDYFEITSPKFVPVKVGLIK--GMETEVAEVQKVFK 84 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 +L++ F +I + F ++ +V + K+ ++E L Sbjct: 85 DNLEKVLYFQII-----------EGTKEDFAQ-----SEEVVFLLGMLLNKNPYQLEINL 128 Query: 131 W--D---VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV 185 W D +K II K+ R ++D KG S+I + + Sbjct: 129 WRHDEELPAYQKVIILKE----TNKLRDTGILLADWFVSKTLNFKGVSKSKIAY---TAQ 181 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + ++ + DG + + + +S + + + Y T+ V L Sbjct: 182 KTNRRKNIMLSSYDGTVQKRFSYNLGSNNLA-SWSFDNKNILYTTFTRS---SVQLTIQP 237 Query: 246 IDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R +I +F S L + +G+ L+++ K DIYS +L++ E++ + Sbjct: 238 SIRLRAKILSFPSAFQPLGASWRIDGESILLTLMKKGNSDIYSYNLKNAKLEKIFAWKSL 297 Query: 304 NISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S S D +I F SD + Q+YV +R++ + P WSP + Sbjct: 298 ETSPQMSQDGQKIAFVSDSASPNRPQIYVYNLLNRKTERVTFRGSYN-SSPKWSPDATQL 356 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + F + + L + P WSP+G+ ++FS KK SKLY Sbjct: 357 IYERQVKGVFQLFKYTLHNRRHTQLTFGRYDSEKPDWSPNGKQIVFSAKKGN--VSKLYY 414 Query: 421 IDLNGRNETLINTPAYA---SDPQWV 443 I G + T ++P W Sbjct: 415 ISAFGGRTIRVTTNDNNIEETNPVWS 440 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 3/178 (1%) Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + + QK + +I +R + L N AS+S D+ I++ + QL Sbjct: 174 SKIAYTAQKTNRRKNIMLSSYDGTVQKRFSYNLGSNNLASWSFDNKNILYTTFTRSSVQL 233 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLV 387 + S K +S W G+ I T I ++ E++ Sbjct: 234 TIQPSIRLRAKILSFPSAFQPLGASWRIDGESILLTLMKKGNSDIYSYNLKNAKLEKIFA 293 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 S +P S G+ + F ++Y +L N + E + +Y S P+W Sbjct: 294 WKSLETSPQMSQDGQKIAFVSDSASPNRPQIYVYNLLNRKTERVTFRGSYNSSPKWSP 351 >gi|148656049|ref|YP_001276254.1| WD40 domain-containing protein [Roseiflexus sp. RS-1] gi|148568159|gb|ABQ90304.1| WD40 domain protein beta Propeller [Roseiflexus sp. RS-1] Length = 567 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 4/225 (1%) Query: 222 NQQ-KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + Q ++ +A + + +P +S G R + + ++ Sbjct: 27 DGQGRIVFAASRGDGGAFDIFSADLAGERVVNLTADPHPDRSPSWSPAGDRIVFASRRAS 86 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D+Y + + RLT + ++SPD QI F S R+G+ +Y + + D +R Sbjct: 87 NWDLYVMRADGSDLRRLTEHPAYDGEPAWSPDGRQIAFTSMRDGQLDIYTLDLDSGDLRR 146 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 I+ A P W+P G +AFT + I + +GS L + +P WSP Sbjct: 147 ITSHPSA-DSQPTWAPDGRRLAFTSWRDSNQEIYITDVEGSTIVNLTNHPAPDHSPAWSP 205 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 GR + F +DG + + + G DP W Sbjct: 206 DGRFIAFISDRDGGGNLHIADL-VTGEERRAGPDNLGLRDPAWTP 249 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 14/286 (4%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + + D RI+F + G + D G + LT P +SP Sbjct: 20 KVHAAQQDGQGRIVFAASRGDGGAF--DIFSADLAGERVVNLTAD-PHPDRSPSWSPAGD 76 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 ++ +A+ + +Y+M +R+ + P +S +G++ + +D +DI Sbjct: 77 RIVFASRRASN-WDLYVMRAD-GSDLRRLTEHPAYDGEPAWSPDGRQIAFTSMRDGQLDI 134 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y++DL S R+T+ + +++PD ++ F S R+ +++Y+ GS ++ + Sbjct: 135 YTLDLDSGDLRRITSHPSADSQPTWAPDGRRLAFTSWRDSNQEIYITDVEGSTIVNLT-N 193 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRS 403 A P WSP G IAF + + +ER D+ L+ P W+P G Sbjct: 194 HPAPDHSPAWSPDGRFIAFISDRDGGGNLHIADLVTGEERRAGPDNLGLRDPAWTPGGGL 253 Query: 404 LIFS------RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + + R+ G L++ L+G + + Y P W Sbjct: 254 MAVAPWALGERRFFSRQGVALFTPGLSGGTFVVASVHGYNR-PAWS 298 >gi|254443124|ref|ZP_05056600.1| hypothetical protein VDG1235_1358 [Verrucomicrobiae bacterium DG1235] gi|198257432|gb|EDY81740.1| hypothetical protein VDG1235_1358 [Verrucomicrobiae bacterium DG1235] Length = 355 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 11/286 (3%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D + +G F+ ++ F+SE + +CV D N+ LT + P + Sbjct: 78 DRAISKMRRTEGFFSGKLTFISEETGA----TEVCVSDLLFQNVTILTNDGVNAV-RPHW 132 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + Y +Y +Y +D R R + +++ + + R+S +G R + V + Sbjct: 133 SPDGNYIVYTSYKAG-FPDIYRLDLRAQR-RDVVADYKGLNMGARYSPDGSRIAMIVSGN 190 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 D++ + S LT + + + ++SPD +++VF SD G QLYVM ++G + Sbjct: 191 SNADVWVREA-SGEMRNLTRSRGLEAAPAWSPDGTRLVFSSDERGGPQLYVMPAHGGTSR 249 Query: 340 RISQDKEASYFDPVWSPQ-GDLIAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTW 397 R+ D +P W+PQ +LIAFT G I + + R + E + P W Sbjct: 250 RLRTDISGYCAEPDWNPQFENLIAFTAAEGSGSQIAIYDSKAGKSRFVTTESGDAIEPQW 309 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 GR L+++ ++ + K+ L G + + A S P +V Sbjct: 310 LNDGRHLVYTHRRANRSEIKIMDT-LTGASYVISGRRAKVSQPSFV 354 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 5/176 (2%) Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + ++ A ++ DL LTN + +SPD + IV+ S + G +Y Sbjct: 94 KLTFISEETGATEVCVSDLLFQNVTILTNDGVNAVRPHWSPDGNYIVYTSYKAGFPDIYR 153 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + + ++ + D + +SP G IA + V + G L Sbjct: 154 LDLR-AQRRDVVADYKGLNMGARYSPDGSRIAMIVSGNSNADVWVREASGEMRNLTRSRG 212 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP--AYASDPQWVG 444 AP WSP G L+FS + G G +LY + +G + T Y ++P W Sbjct: 213 LEAAPAWSPDGTRLVFSSDERG--GPQLYVMPAHGGTSRRLRTDISGYCAEPDWNP 266 >gi|257459074|ref|ZP_05624193.1| protein TolB [Campylobacter gracilis RM3268] gi|257443459|gb|EEV18583.1| protein TolB [Campylobacter gracilis RM3268] Length = 415 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 164/413 (39%), Gaps = 17/413 (4%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 LLL+L + A + + N + + ++ E G K +++ DL+ Sbjct: 4 LLLILAFCSSIFAADATMSIVNEGVNLPKIVVQDASNLANSEFGNKFFKLMVGDLKVGAT 63 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F + + + Q + D+ + L+ + + + ++ ++ + + Sbjct: 64 FEVSDE--YLQSSYDADASSN----SGSSGAALIVRYAVSDKSSPMSLKAKVLEANSGRV 117 Query: 139 IIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + K F S+ + +AH +I + + D+ ++ +S + ++ + V D Sbjct: 118 MYEKSFTLSNAEKYPFLAHMAVSEIVKQLGYSNVDWMKEMILLSRYTST--RESEIMVAD 175 Query: 198 RDGANIRYLTPSRDQILFEPRF-SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 + + + P++ S Q + Y Y +++ +Y + K Sbjct: 176 YTLTYQQVVLRG--GLNIFPKWASAAQNEFYYTYYVNKNTPAIYKFNLSNGSKSKIFTGH 233 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 M +A S++G++ LI+ + DIY D+ S + +++T+ I+++ ++ S++ Sbjct: 234 -GMTIASDVSADGRKLLITNAPKDQPDIYLYDIASGSAKQITDYAGIDVNGNFIDGDSRV 292 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGV 375 F SDR G ++ NG + +++ + + S G+ + ++ G F I + Sbjct: 293 AFVSDRLGYPNVFATSINGGNVQQLVYHGKNNN---SISTNGNYVTYSSRDGGGGFNIYL 349 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + R L P +S G S++F ++ + + ++ N + Sbjct: 350 ISTQTDMIRQLTASGKNMFPRFSSDGGSIMFIKQDGSGSSVGIIRVNENKSFQ 402 >gi|315637614|ref|ZP_07892820.1| translocation protein TolB [Arcobacter butzleri JV22] gi|315478068|gb|EFU68795.1| translocation protein TolB [Arcobacter butzleri JV22] Length = 439 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 166/437 (37%), Gaps = 30/437 (6%) Query: 3 LRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG 62 + + +++ +KI L + L+ F + + + + + Sbjct: 1 MILNLKDKIMLKIFLFVSLMFCSVF--AEVDGHLDIVKKGMVLPKIVVTIATDSPEKGTL 58 Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKD 122 K+ + +S DL S F++ + + + +P + G +++ +E Sbjct: 59 SKIKKSLSDDLGISGHFDV----ATSTTQFSYNGMPDLS-LRNQGISLVINLSAEREAGG 113 Query: 123 RLRVEFRLWDVK--------DRKQIIGKKFFSS-PASWRKIAHTISDDIYQSITGEKGDF 173 ++ +L+D+ ++ K F +S + +AH + I + Sbjct: 114 NYTLKTKLYDLNAVNALSGNTSGLVLEKNFTTSLEERFVFLAHKSAITINDYFKAPSIAW 173 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + FV +V G K+ + + D + + + P+++ +QK Y T + Sbjct: 174 MDK--FVVFAVYDGPRKSDIMIGDYSLTYKKKVVTG--GLNIFPKWADKEQKTIYYTSYN 229 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 D + ++ +R+ + I + M+ S +G + LI+ DI+ D+ + Sbjct: 230 YDKPTLVKLNI-YNRSKEVIMDSDGMLACSDVSKDGSKLLITASPTGQPDIFLYDVNTRT 288 Query: 294 TERLTNTLF-INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +++ I++ + D +IVF SDR G ++ + S +R+ S + Sbjct: 289 KKQVAGGPGWIDVGGQFVEDDKEIVFVSDRLGNPNIFKQRIGSSSVERMVF---HSKNNS 345 Query: 353 VWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + G+ I F+ G+ F + ++ + L Q P +SP G+S++F Sbjct: 346 SVTSNGNNIIFSSKDSDNEMGKSFNLYLISTRTDNLQRLTTQGVNQFPKFSPDGQSVLFI 405 Query: 408 RKKDGDTGSKLYSIDLN 424 + + + ++ N Sbjct: 406 KTVGDASAVGIIRLEYN 422 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 35/209 (16%) Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + I + D + D + G+++L+T + L+DV R KK + Sbjct: 246 EVIMDSDGMLACSDVSKDGSKLLITASPTGQPD------IFLYDVNTRT----KKQVAGG 295 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 W + +D + I+FVS+ + + I R + Sbjct: 296 PGWIDVGGQFVED------------DKEIVFVSDRLGNPNIFKQRIGSSS---VERMVFH 340 Query: 209 SRDQILFEPRFSPNQQKVAYATYD----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 S++ N + +++ D +YL+ TR D + + + P+ Sbjct: 341 SKNNSSVTS----NGNNIIFSSKDSDNEMGKSFNLYLISTRTDNLQRLTT--QGVNQFPK 394 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNA 293 FS +G+ L +A + + L+ N Sbjct: 395 FSPDGQSVLFIKTVGDASAVGIIRLEYNK 423 >gi|152993347|ref|YP_001359068.1| translocation protein TolB [Sulfurovum sp. NBC37-1] gi|151425208|dbj|BAF72711.1| Tol biopolymer transport system component TolB [Sulfurovum sp. NBC37-1] Length = 412 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 75/423 (17%), Positives = 164/423 (38%), Gaps = 29/423 (6%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVF 79 LL+L+ ++ A +K+ + + S +++ GK+ +++ D + S F Sbjct: 4 LLILLFSIHLFAVDASMKIEKDVEHRSRIALV----DGSSVSNGKLFKILLSDFKISGHF 59 Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 L +K ++ P + + +V R + + +++E RL D QI Sbjct: 60 -LADSSLYKSNFSSGFIAPNLKS-----KEYIVKYRFTQA--NGVKLEIRLLKASDGSQI 111 Query: 140 IGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 K + +S + H DI + + + +R +V S + ++ + + D Sbjct: 112 FEKSYAIQNSSKMPFLVHKAVYDINRVLKYPDIGWINR--YVVFSRYTAPKRSEILLADY 169 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 + + + P+++ + QK Y T I + ++ K + + Sbjct: 170 TFTYQKVIIRG--GLNLFPKWADSAQKSFYYTSYAGLIPTLNKINIYTGSKSK-VASSEG 226 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 MI+ S +G + L+++ + DIY + L + + R+T I+++ Y + SQIVF Sbjct: 227 MIVCSDVSPDGSKMLLTMSPEGQPDIYEMSLFTGSKTRVTKFNGIDVNGKYLGNGSQIVF 286 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------FA 372 S+R G ++ N + +++ + G+ I + G F Sbjct: 287 VSNRLGYANIFKKSINSAAVQQVVFHGRNNNAVDA---HGNKIIYCSREGNNAFGGNRFN 343 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + +G R L + Q P +S G +++ ++ S + I+L L Sbjct: 344 LYLTSANGGSSRPLTTTGSNQFPRFSTDGSVILYIKQNGNS--SSIGYINLGSSQSLLFP 401 Query: 433 TPA 435 Sbjct: 402 LGG 404 >gi|294505693|ref|YP_003569754.1| TolB protein precursor [Salinibacter ruber M8] gi|294342132|emb|CBH22796.1| TolB protein precursor [Salinibacter ruber M8] Length = 543 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 29/291 (9%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 ++ S + + DG+N+R +T S I P +SP+ ++A+ D Sbjct: 254 IAFSSEDTGGDAEIYTVRPDGSNLRQVTNSATGI--SPTWSPDGSRIAFTADGGGDDAND 311 Query: 240 YLMDTRIDR-------APKRIGNFRSMILAPRFSSNGKRALISVQKDEA------MDIYS 286 + R D P + + R +AP +S +G R S D IY+ Sbjct: 312 PIATIRPDGSDLSPVTDPADVEDGRIADVAPEWSPSGDRIAFSRDPDTTARDTTEPRIYT 371 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ--- 343 VD + ++ I + ++SPD S+I F S ++ ++ +GSD ++++ Sbjct: 372 VDPDGSDLRQVAEDKAIGFNPTWSPDGSRIAF-STPADPSVIFTIRPDGSDLRQVTDRSD 430 Query: 344 -DKEASYFDPVWSPQGDLIAFTKFSGEK--FAIGVMKKDGSQERLLVEDSN------LQA 394 D + P WSP G IAF F I + DGS + + + + Sbjct: 431 IDGNSGDLAPAWSPDGSRIAFQSDRDGGSSFDIYTVDPDGSDLKQVTTAGDRDDRVDDIS 490 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 P WSP G ++F +DG +Y+I +G E + N P W Sbjct: 491 PAWSPDGSRIVFGSNRDGSAVPDIYTIRPDGSELERITNNDRLDFGPAWSP 541 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 359 DLIAFTKFS-GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +LIAF+ G I ++ DGS R + + +PTWSP G + F+ GD + Sbjct: 252 NLIAFSSEDTGGDAEIYTVRPDGSNLRQVTNSATGISPTWSPDGSRIAFTADGGGDDAND 311 Query: 418 -LYSIDLNGRNETLINTPAYASD-------PQWVG 444 + +I +G + + + PA D P+W Sbjct: 312 PIATIRPDGSDLSPVTDPADVEDGRIADVAPEWSP 346 >gi|297620364|ref|YP_003708501.1| putative protein TolB [Waddlia chondrophila WSU 86-1044] gi|297375665|gb|ADI37495.1| putative protein TolB [Waddlia chondrophila WSU 86-1044] Length = 436 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 123/338 (36%), Gaps = 23/338 (6%) Query: 125 RVEFRLWDVKDRKQI-IGKKFFSS-PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + RL+ + +G++ S + RKI H I+D I++++ G G ++R+L+ Sbjct: 100 HISVRLFSSDGEEDFRLGQQHLSGYLSEDRKIIHRIADAIHRALFGADGIASTRLLYTVR 159 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP----NQQKVAYATYDDEDILR 238 +V + + D DGAN LT + P + P Q + + I + Sbjct: 160 TVEEKTEYSEIWQSDYDGANAMQLTSRQAGYCITPGYVPHLPGKQAESFFYVSYKTGIPK 219 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS---VDLQS--NA 293 VY+ K + L P + R D++ + Sbjct: 220 VYIASLGEPIGRKMLT-LSGNQLMPAINRQRDRIAFISDVTGNPDLFIQEFSPEKGGIGK 278 Query: 294 TERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR------ISQDKE 346 L + S ++SPD ++ F S++ G ++Y+M + Sbjct: 279 PRHLFSARYATQGSPTFSPDGFRLAFVSNKGGSPRVYLMNIPPQGTPLKEIEPILVTKVN 338 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLI 405 P WSP G +A+ + I V ER L + N + P+W+ + ++ Sbjct: 339 RENTAPCWSPDGTKLAYCSKTKGVRQIWVYDLLTGVERQLTDGPRNKENPSWASNSLHIV 398 Query: 406 FSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQW 442 ++ G +LY I+L + + + P W Sbjct: 399 YNTSDAG--NCELYLINLKQAKAVKITSGAGEKRFPSW 434 >gi|297183216|gb|ADI19356.1| periplasmic component of the tol biopolymer transport system [uncultured Chloroflexi bacterium HF0500_03M05] Length = 284 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 11/252 (4%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L VM+ G + R + S +P++SPN ++AY + E+ + P Sbjct: 42 LEVMEVSGTS-RQVLASASGTHRDPQWSPNDIRIAYIAENGEETYLYVINANGT--QPML 98 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + + +S +G + +V + E IY + R T+T + S +S D Sbjct: 99 LTSVPGNEIG-GWSPDGTSVVFAVSEGEEQGIYIRNPDGVNEFRRTDTP--DFSPVWSTD 155 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 S +I F S R+G ++YVM ++GS+Q R++ + EA +D WSP G+ + F Sbjct: 156 SERIAFLSRRDGNPEIYVMNTDGSNQFRLT-ETEALEYDISWSPNGERLLFVSERDGNAE 214 Query: 373 IGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I + + + SQ RL + + P WSP+G + F+ D DT +++ +D +G N+T + Sbjct: 215 IYIAELESDSQVRLTHNEVKDEHPVWSPNGDKIAFTSHLDADT--EIFIMDSDGDNQTRL 272 Query: 432 NTP-AYASDPQW 442 + ++P W Sbjct: 273 TNNESEDTNPSW 284 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 12/223 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI +++E+ + L V++ +G LT + +SP+ V +A + + Sbjct: 73 RIAYIAENG----EETYLYVINANGTQPMLLTSVPGNEIGG--WSPDGTSVVFA-VSEGE 125 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ + +R +P +S++ +R ++D +IY ++ + Sbjct: 126 EQGIYIRNPDGVNEFRRTDTP---DFSPVWSTDSERIAFLSRRDGNPEIYVMNTDGSNQF 182 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RLT T + S+SP+ +++F S+R+G ++Y+ + Q R++ + E PVWS Sbjct: 183 RLTETEALEYDISWSPNGERLLFVSERDGNAEIYIAELESDSQVRLTHN-EVKDEHPVWS 241 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTW 397 P GD IAFT I +M DG + L + S P+W Sbjct: 242 PNGDKIAFTSHLDADTEIFIMDSDGDNQTRLTNNESEDTNPSW 284 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 81/199 (40%), Gaps = 6/199 (3%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + +P SS+GK + + + +++ + + L + + Sbjct: 5 GTSARNLTKSAIDEFSPVVSSDGKLVAFLSGSGDNIALEVMEVSGTSRQVLASASGTHRD 64 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SP+ +I + ++ + LYV+ +NG+ ++ WSP G + F Sbjct: 65 PQWSPNDIRIAYIAENGEETYLYVINANGTQPMLLTSVPGNEIGG--WSPDGTSVVFAVS 122 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 GE+ I + DG E + + +P WS + F ++DG ++Y ++ +G Sbjct: 123 EGEEQGIYIRNPDGVNEFRRTDTPDF-SPVWSTDSERIAFLSRRDG--NPEIYVMNTDGS 179 Query: 427 NE-TLINTPAYASDPQWVG 444 N+ L T A D W Sbjct: 180 NQFRLTETEALEYDISWSP 198 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 93/187 (49%), Gaps = 7/187 (3%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E G ++ V +V G + + + + DG N T + D F P +S + +++A Sbjct: 105 NEIGGWSPDGTSVVFAVSEGEEQG-IYIRNPDGVNEFRRTDTPD---FSPVWSTDSERIA 160 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + + D + +Y+M+T R+ ++ +S NG+R L ++D +IY Sbjct: 161 FLSRRDGNP-EIYVMNTD-GSNQFRLTETEALEYDISWSPNGERLLFVSERDGNAEIYIA 218 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 +L+S++ RLT+ + +SP+ +I F S + ++++M S+G +Q R++ + E+ Sbjct: 219 ELESDSQVRLTHNEVKDEHPVWSPNGDKIAFTSHLDADTEIFIMDSDGDNQTRLT-NNES 277 Query: 348 SYFDPVW 354 +P W Sbjct: 278 EDTNPSW 284 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 +D + LT + S S D + F S L VM+ +G+ +++ Sbjct: 1 MDSDGTSARNLTKSAIDEFSPVVSSDGKLVAFLSGSGDNIALEVMEVSGT-SRQVLASAS 59 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 ++ DP WSP IA+ +GE+ + V+ +G+Q LL + WSP G S++F Sbjct: 60 GTHRDPQWSPNDIRIAYIAENGEETYLYVINANGTQPMLLTSVPGNEIGGWSPDGTSVVF 119 Query: 407 SRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWV 443 + + + G +Y + +G NE +TP ++ P W Sbjct: 120 AVSEGEEQG--IYIRNPDGVNEFRRTDTPDFS--PVWS 153 >gi|154148092|ref|YP_001406273.1| translocation protein TolB [Campylobacter hominis ATCC BAA-381] gi|153804101|gb|ABS51108.1| protein TolB [Campylobacter hominis ATCC BAA-381] Length = 417 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 70/415 (16%), Positives = 160/415 (38%), Gaps = 15/415 (3%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQR 75 L LL F A + + +N + + + ++ L K +++ DL+ Sbjct: 3 KLLLLFTFCVSLFAYVDDATMTITNKGSNLPKIVVQNSSMIANSSLNQKFFKLMVGDLKV 62 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 F + + + + + D + G ++V R + ++ ++ D Sbjct: 63 GATFEVSDE--YFESSYDGDFRTNIS--SDSGTALIV--RYALSDASPMSLKAKVLDAIT 116 Query: 136 RKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 K + F S + +AH +I +++ D+ ++ S ++ + Sbjct: 117 GKILYENSFSIEDKSKFPFLAHDAVSEIVKNLGYSNVDWMREMILFSRYTS--AKESEIL 174 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D + + + P+++ Q Y TY + + +I Sbjct: 175 IADYTLTYQKTVVRG--GLNIFPKWANKAQNAFYYTYYINKNTPAIFKYNLSNGSKSKIF 232 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 R M +A S +G + LI+ + DI+ +L S + +++TN I+++ ++ + S Sbjct: 233 TGRGMTIASDVSDDGSKLLITNAPKDQPDIFLYNLNSGSMKQITNYPGIDVNGNFVDNDS 292 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAI 373 +IVF SDR G ++ +G + +++ + + S G+ I ++ G F I Sbjct: 293 RIVFVSDRLGYPNIFAQSIDGGNVEQMVFQGKNNN---SISTHGNYIVYSSRDGGGSFNI 349 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 ++ + R L D P +S G S++F + + + + I+ N + Sbjct: 350 YLISTGTNLIRQLTADGKNMFPRFSSDGGSVMFIKHSNFGSSIGIIRINENKSFQ 404 >gi|269925257|ref|YP_003321880.1| WD40 domain protein beta Propeller [Thermobaculum terrenum ATCC BAA-798] gi|269788917|gb|ACZ41058.1| WD40 domain protein beta Propeller [Thermobaculum terrenum ATCC BAA-798] Length = 419 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 16/280 (5%) Query: 174 NSRILFVSESVVSGI----IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + RI F S+ V G + + DG + LT P ++P +++A+ Sbjct: 147 SGRIAFSSDRPVPGRNNIRKNRDIYSIRADGTGLVRLT-GESSFDGMPSWAPTGEQIAFV 205 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + L++++M++ P ++ + + P +S +GK ++ +D I + Sbjct: 206 SDRTGS-LQIWIMNSD-GSNPYQLTYGKIIAQDPDWSPDGKYIAYTLGRDTG--IAKIPA 261 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + LT+ + + ++SPD S+I F Q++VM ++GS ++I+ D + Sbjct: 262 KGGKPIVLTDLSYPQSAPAWSPDGSKITFMGKPGKYWQVFVMNADGSGLRQITHD-PTDH 320 Query: 350 FDPVWSPQGDLIAFTKFSGEKF--AIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 P W P G I + E I +M DG+ + + + P SP GR ++ Sbjct: 321 RFPRWMPDGKRIVYNTRKSEHVIGQIFIMNADGTNVKQITMSTEGENGRPFPSPDGRYIV 380 Query: 406 FSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 F+ + D ++Y + +G + L NT +P W Sbjct: 381 FNSNRL-DNNWEIYIMRPDGSEVKRLTNTIGDDFEPCWSP 419 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 92/231 (39%), Gaps = 15/231 (6%) Query: 220 SPNQQKVAYATYDD-------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +P+ ++A+++ +Y + R+ S P ++ G++ Sbjct: 145 APSG-RIAFSSDRPVPGRNNIRKNRDIYSIRADGTGLV-RLTGESSFDGMPSWAPTGEQI 202 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + ++ I+ ++ + +LT I +SPD I + R+ + + Sbjct: 203 AFVSDRTGSLQIWIMNSDGSNPYQLTYGKIIAQDPDWSPDGKYIAYTLGRD--TGIAKIP 260 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SN 391 + G ++ D P WSP G I F G+ + + VM DGS R + D ++ Sbjct: 261 AKGGKPIVLT-DLSYPQSAPAWSPDGSKITFMGKPGKYWQVFVMNADGSGLRQITHDPTD 319 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TPAYASDP 440 + P W P G+ ++++ +K +++ ++ +G N I T P Sbjct: 320 HRFPRWMPDGKRIVYNTRKSEHVIGQIFIMNADGTNVKQITMSTEGENGRP 370 >gi|320161659|ref|YP_004174884.1| putative protein kinase [Anaerolinea thermophila UNI-1] gi|319995513|dbj|BAJ64284.1| putative protein kinase [Anaerolinea thermophila UNI-1] Length = 710 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 24/299 (8%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 ++ G S I FVSE + + +M DG N+R LT R+ +P +SP Sbjct: 417 VFTPTATPLGGGASEIAFVSERTG----QMQIWMMSADGKNLRQLTNMRNG-ACQPAWSP 471 Query: 222 NQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + K+A+ + + + +YL+ P + + P +S +GK+ + Sbjct: 472 DGSKLAFISPCPGKREIYEGSAIYLLAMD-GSEPIPLPSSPEGDFDPAWSPDGKKLAFTS 530 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + I+ +DLQ+ ++ + + ++ S+SP S QI F R Q+++M +G Sbjct: 531 LRTGRPSIFVMDLQTLVAREISESRYSDLQPSWSPISRQIAFVR-RISNSQIWIMSEDGE 589 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM------KKDGSQERLLVEDS 390 +Q R S + + F P WS G I + + G ++ ++ + R+ + Sbjct: 590 NQVRFSPPGDVTNFFPTWSWDGQAILYNQIVGGSKVPRLVGMRYEDRQSPREFRIPASGT 649 Query: 391 NLQAP--TW--SPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 P ++ SP G + + DG T +Y + +NG N L P++ P W Sbjct: 650 VDIGPVGSFTLSPDGFWVAYEGWPDG-TNHDIYLMTMNGATNIRLTTDPSFDYSPVWRP 707 >gi|213582179|ref|ZP_03364005.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 172 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 4/175 (2%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 +++ +TG KG F +RI +V ++ G L V D DG N +++ Q L P +SP Sbjct: 1 VFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSP 58 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + K+AY T++ ++ T + A +++ +F AP FS +G + ++ K + Sbjct: 59 DGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGS 116 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M NG Sbjct: 117 LNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGG 171 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 65/160 (40%), Gaps = 2/160 (1%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + ++AY + L + D + + +++P +S +G + + Sbjct: 13 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGR 72 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 + L + A ++ + N + ++SPD +++ F + G LYVM ++I Sbjct: 73 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQI 132 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + D ++ +P W P +AFT + + M +G Sbjct: 133 T-DGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGG 171 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 7/160 (4%) Query: 270 KRALISVQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 R VQ + Y + D + + +S ++SPD S++ + + G+ Sbjct: 14 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRS 73 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 L + ++++ + P +SP G +AF + VM Q R + Sbjct: 74 ALVIQTLANGAVRQVASFPRHN-GAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQI 132 Query: 387 VED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + SN PTW P ++L F+ + G ++Y +++NG Sbjct: 133 TDGRSNNTEPTWFPDSQTLAFTSDQAGR--PQVYKMNING 170 >gi|157737824|ref|YP_001490508.1| translocation protein TolB [Arcobacter butzleri RM4018] gi|157699678|gb|ABV67838.1| colicin tolerance-like protein (tolB) [Arcobacter butzleri RM4018] Length = 430 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 70/427 (16%), Positives = 161/427 (37%), Gaps = 30/427 (7%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +KI L + L+ F + + + + + K+ + +S D Sbjct: 2 LKIFLFVSLMFCSVF--AEVDGHLDIVKKGMVLPKIVVTIATDSPEKGTLSKIKKSLSDD 59 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L S F++ + + + +P + G +++ +E ++ +L+D Sbjct: 60 LGISGHFDV----ATSTTQFSYNGMPDLS-LRNQGISLVINLSAEREAGGNYTLKTKLYD 114 Query: 133 V--------KDRKQIIGKKFFSS-PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 + ++ K F +S + +AH + I + + FV + Sbjct: 115 LNAVNALSGNTSGLVLEKNFTTSLEERFVFLAHKSAITINDYFKAPSIAWMDK--FVVFA 172 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V G K+ + + D + + + P+++ +QK Y T + D + ++ Sbjct: 173 VYDGPRKSDIMIGDYSLTYKKKVVTG--GLNIFPKWADKEQKTIYYTSYNYDKPTLVKLN 230 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF- 302 +R+ + I + M+ S +G + LI+ DI+ D+ + +++ Sbjct: 231 I-YNRSKEVIMDSDGMLACSDVSKDGSKLLITASPTGQPDIFLYDVNTRTKKQVAGGPGW 289 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I++ + D +IVF SDR G ++ + S +R+ S + + G+ I Sbjct: 290 IDVGGQFVEDDKEIVFVSDRLGNPNIFKQRIGSSSVERMVF---HSKNNSSVTSNGNNII 346 Query: 363 FTKFS-----GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 F+ G+ F + ++ + L Q P +SP G+S++F + + Sbjct: 347 FSSKDSDNEMGKSFNLYLISTRTDNLQRLTTQGVNQFPKFSPDGQSVLFIKTVGDASAVG 406 Query: 418 LYSIDLN 424 + ++ N Sbjct: 407 IIRLEYN 413 Score = 44.6 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 35/209 (16%) Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + I + D + D + G+++L+T + L+DV R KK + Sbjct: 237 EVIMDSDGMLACSDVSKDGSKLLITASPTGQPD------IFLYDVNTRT----KKQVAGG 286 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 W + +D + I+FVS+ + + I R + Sbjct: 287 PGWIDVGGQFVED------------DKEIVFVSDRLGNPNIFKQRIGSSS---VERMVFH 331 Query: 209 SRDQILFEPRFSPNQQKVAYATYD----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 S++ N + +++ D +YL+ TR D + + + P+ Sbjct: 332 SKNNSSVTS----NGNNIIFSSKDSDNEMGKSFNLYLISTRTDNLQRLTT--QGVNQFPK 385 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNA 293 FS +G+ L +A + + L+ N Sbjct: 386 FSPDGQSVLFIKTVGDASAVGIIRLEYNK 414 >gi|206889249|ref|YP_002248789.1| protein TolB, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741187|gb|ACI20244.1| protein TolB, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 395 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 75/422 (17%), Positives = 165/422 (39%), Gaps = 36/422 (8%) Query: 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVS 70 + +++ L L++ F + + + +++A F + L V Sbjct: 1 MKLRLIATLFLIISIVFIGPVFAEKIYLDITQPSIKKLTLAMEGFEKVPVLFNT----VK 56 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 ++L+ ++ F + +K + +P W S +++V + ++ ++ Sbjct: 57 ENLEFTEYFRIYGPFPYKGEGFDPSL------WKSSDVEIVVRAETLN------KISIQV 104 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 + V I K++ + + + IS DIY+ +TG+K F +R +F+ Sbjct: 105 FTVTASSPIFAKEYPLNDNEY--TGNLISSDIYKLLTGKKAPFFNRFIFIK----KFSKS 158 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + + + +G I RD I R K+ Y++ + + + D Sbjct: 159 MGIFISNWNGKTIHDTGIRRDIIS---RVVLRGNKIFYSSLE-GKFWHIEIYDLSTRLNK 214 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + I + + L G I ++ D + + S + + ++ +I S + Sbjct: 215 EIIKSKALLQLGDVI---GDSQFIYLENDGEISQIKITDLSGKSRTVASSRWIESSPRW- 270 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 +SQI F S+R G Q+Y G+ +RI+ + +P SP G +AF+ G Sbjct: 271 -HASQIFFVSNRAGSPQIYQA-VEGAGARRITFQGRYN-TEPSISPDGSKLAFSSLVGG- 326 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 F I ++ + + ++ N + P++ P G L + G ++Y I +G + Sbjct: 327 FQIYILDLLSGTQNQITKEGNNEQPSFCPDGNFLTIMSDRRGKK--EIYLISQDGLIQKP 384 Query: 431 IN 432 + Sbjct: 385 LT 386 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 10/127 (7%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 S+I FVS S I ++ +GA R +T + + EP SP+ K+A+++ Sbjct: 272 ASQIFFVSNRAGSPQIYQAV-----EGAGARRIT-FQGRYNTEPSISPDGSKLAFSSLVG 325 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 ++Y++D + P F +G I + +IY + Sbjct: 326 G--FQIYILDLLSGTQNQI--TKEGNNEQPSFCPDGNFLTIMSDRRGKKEIYLISQDGLI 381 Query: 294 TERLTNT 300 + LT Sbjct: 382 QKPLTIG 388 >gi|159897506|ref|YP_001543753.1| WD40 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890545|gb|ABX03625.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus ATCC 23779] Length = 316 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 12/247 (4%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + + L P Q++A+ ++ P+ + + + P Sbjct: 29 QPTSLPSSVPLATPTVGEAPQRLAFVANQINRG--TIMISGLDANPPQLLNPDFPLAIDP 86 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 +S +G VQ + ++Y + ++TN + S S+SPD Q+ F+S+R Sbjct: 87 TWSPDGNELAFVVQDSDGFNMYISSADGSNLFQVTNQPGDDQSPSWSPDGQQLAFQSNRS 146 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMK 377 G ++LY++ +GS+ ++++ D A + P WSP G LIAFT G + V++ Sbjct: 147 GNDELYLINRDGSNLRQLTND-PARDWQPSWSPDGSLIAFTSDRGAQTPDGWNDQLYVIQ 205 Query: 378 KDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 DG + L E + P WSP + L++ + +Y+++ +G + TL+ A+ Sbjct: 206 PDGQGLKYLTEGFGRARHPAWSPDSQQLVYVVGGGDVGSNSIYTVNRDGSDPTLLYANAF 265 Query: 437 ASDPQWV 443 DPQW+ Sbjct: 266 --DPQWL 270 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 20/278 (7%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 T G+ R+ FV+ + G ++ + D AN L + +P +SP+ ++ Sbjct: 41 TPTVGEAPQRLAFVANQINRG----TIMISGLD-ANPPQLLNPDFPLAIDPTWSPDGNEL 95 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 A+ D D +Y+ + ++ N +P +S +G++ + ++Y Sbjct: 96 AFVVQD-SDGFNMYI-SSADGSNLFQVTNQPGDDQSPSWSPDGQQLAFQSNRSGNDELYL 153 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDR------EGKEQLYVMQSNGSDQKR 340 ++ + +LTN + S+SPD S I F SDR +QLYV+Q +G K Sbjct: 154 INRDGSNLRQLTNDPARDWQPSWSPDGSLIAFTSDRGAQTPDGWNDQLYVIQPDGQGLKY 213 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWS 398 ++ + P WSP + + G+ +I + +DGS LL +N P W Sbjct: 214 LT-EGFGRARHPAWSPDSQQLVYVVGGGDVGSNSIYTVNRDGSDPTLLY--ANAFDPQWL 270 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 R L F+ + + L +DLN ++ T A Sbjct: 271 -DQRML-FTTYDEQTFHTALRILDLNTLEVSVPITMAD 306 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 7/181 (3%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 +R + I L +N + L + I ++SPD +++ F +Y Sbjct: 49 QRLAFVANQINRGTIMISGLDANPPQLLNPDFPLAIDPTWSPDGNELAFVVQDSDGFNMY 108 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + ++GS+ +++ ++ P WSP G +AF + ++ +DGS R L D Sbjct: 109 ISSADGSNLFQVT-NQPGDDQSPSWSPDGQQLAFQSNRSGNDELYLINRDGSNLRQLTND 167 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDT----GSKLYSIDLNGRNETLINTP-AYASDPQWV 443 + P+WSP G + F+ + T +LY I +G+ + A P W Sbjct: 168 PARDWQPSWSPDGSLIAFTSDRGAQTPDGWNDQLYVIQPDGQGLKYLTEGFGRARHPAWS 227 Query: 444 G 444 Sbjct: 228 P 228 >gi|255321984|ref|ZP_05363134.1| protein TolB [Campylobacter showae RM3277] gi|255301088|gb|EET80355.1| protein TolB [Campylobacter showae RM3277] Length = 424 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 75/421 (17%), Positives = 161/421 (38%), Gaps = 24/421 (5%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSKDLQR 75 +LL L + ++ A + V N P I V GK +++ DL+ Sbjct: 4 ILLFLAFASWLFAVDATISV-VNKGLALP-KIVLQDATTAVGDQTFKGKFHKIMLGDLKV 61 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F ++ + + DS + GAQ++ + L + +L + K Sbjct: 62 SSDFEVVDE--YIASSYEGDSNTNVM--SEKGAQLIFRYALEGSPNSPLSLRVKLINAKT 117 Query: 136 RKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 K + + A + IAH ++ + ++ + F+ + +G ++ + Sbjct: 118 ATTQYEKIYNMNDGAKYPFIAHKAIVELINELKMPPVNWMEK--FIIFAKGTGSKQSEIV 175 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D + L + P++ Q Y + L +Y D + K + Sbjct: 176 IADYTLTYQKVLVRG--GLNIFPKWVGADQSAFYYSDYSGKNLVLYRYDVASGQKTKILD 233 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + M++A S NG + L+++ + DIY DL S ++TN I+++ ++ Sbjct: 234 SKGGMLIASDVSQNGDKILLTMAPQDQPDIYIYDLNSKRLSQVTNYSGIDVNGNFVDGDR 293 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---- 370 ++VF SDR G ++ +GS +++ + + + + I ++ K Sbjct: 294 RVVFVSDRLGYPNVFAQNVDGSGFEQLVYHGKNNNSVSTYQ---NYIVYSSREDGKSSFG 350 Query: 371 ---FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 F I ++ R L P +S G+S++F ++ G + + ++ N Sbjct: 351 TRDFNIYMISTQTDYIRQLTASGKNLYPRFSSDGQSVVFIKELGGQSSLGIIRVNENKSF 410 Query: 428 E 428 + Sbjct: 411 Q 411 >gi|223038622|ref|ZP_03608915.1| protein TolB [Campylobacter rectus RM3267] gi|222880024|gb|EEF15112.1| protein TolB [Campylobacter rectus RM3267] Length = 424 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/424 (17%), Positives = 162/424 (38%), Gaps = 26/424 (6%) Query: 16 NLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSKD 72 + L L G F ++ A + V N P I V GK +++ D Sbjct: 3 KILLFLAFAGWLF--AVDATISV-INKGLALP-KIVLQDATTAVGDQAFKGKFHKIMLGD 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F ++ + + DS + GAQ++ + L + +L + Sbjct: 59 LKVSSDFEVVDE--YIASSYEGDSNTNVM--SEKGAQLIFRYALEGSPTSPLSLRVKLIN 114 Query: 133 VKDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 K K + + A + IAH ++ + ++ + F+ + +G ++ Sbjct: 115 AKTATTQYEKIYNMNDGAKYPFIAHKAVVELINELKMPAVNWMEK--FIIFAKGTGSKQS 172 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + D + L + P++ Q+ Y + L +Y D + K Sbjct: 173 EIVIADYTLTYQKVLVRG--GLNIFPKWIGADQRAFYYSDYSGAKLVLYRYDVASGQKTK 230 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + M++A S NG + L+++ + DIY DL S ++TN I+++ ++ Sbjct: 231 ILDSRGGMLIASDVSQNGDKILLTMAPQDQPDIYIYDLNSKRLSQITNYSGIDVNGNFVD 290 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 ++VF SDR G ++ +GS +++ + + + + I ++ K Sbjct: 291 GDRRVVFVSDRLGYPNVFAQNVDGSGFEQMVYHGKNNNSVSTYQ---NYIVYSSREDGKS 347 Query: 371 ------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I ++ R L P +S G+S++F ++ G + + ++ N Sbjct: 348 GFGTRDFNIYMISTQTDYIRQLTASGKNLYPRFSSDGQSVVFIKELGGQSSLGIIRVNEN 407 Query: 425 GRNE 428 + Sbjct: 408 KSFQ 411 >gi|283955278|ref|ZP_06372778.1| putative tolB protein [Campylobacter jejuni subsp. jejuni 414] gi|283793192|gb|EFC31961.1| putative tolB protein [Campylobacter jejuni subsp. jejuni 414] Length = 402 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 160/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK L + LV +G + + + + + + +S + L ++ D Sbjct: 1 MKKILAIFLVFLGTLWAE--DPVIDIVNSGIVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + + T + + + SL ++ G ++ + L Sbjct: 59 LKVSSNFEVVANAAEESNYTFEYVLNKNGNTLSLNV------KIKAGGSNKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH + D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNVLGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMTDYTLTYQKIIVDG--GLNLFPKWGNKEQTLFYYTAYDYDKPTLYRYDLNTNKASKV 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S++G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVSADGSKLLVTMAPKDQPDVYLYDLNTKNLRQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQV 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|153951205|ref|YP_001397366.1| translocation protein TolB [Campylobacter jejuni subsp. doylei 269.97] gi|152938651|gb|ABS43392.1| putative tolB protein [Campylobacter jejuni subsp. doylei 269.97] Length = 402 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 160/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK L + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKILAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + T ++ + + SL ++ G D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNV------KIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDRPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|317011325|gb|ADU85072.1| translocation protein TolB [Helicobacter pylori SouthAfrica7] Length = 417 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 61/369 (16%), Positives = 143/369 (38%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + +++V V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SPNKEQGAINYAELKDKKFELVVLVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + + A AH ++ + + + R++ S+ Sbjct: 100 IS-RLKLYDVNTSALVKTFDYPILSADLYPFAAHNMAIVVNDHLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ PR++ +Q Y T E + Sbjct: 159 YMGPGITNIALADYTM---RYQKEIIKNNRLNIFPRWANAEQTEFYYTQYGERKPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + ++I + + M + SS+G + L+S+ D D+Y D + ++T+ Sbjct: 216 NIQKATH-EKITSSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTSTKITHYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S G+++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSIDGKNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|149199226|ref|ZP_01876264.1| WD40-like Beta Propeller [Lentisphaera araneosa HTCC2155] gi|149137651|gb|EDM26066.1| WD40-like Beta Propeller [Lentisphaera araneosa HTCC2155] Length = 407 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 77/342 (22%), Positives = 143/342 (41%), Gaps = 31/342 (9%) Query: 121 KDRLRVEFRLWDVKDRKQI---IGKKFFSSPASWRKIAHTISDDIYQSITG-----EKGD 172 +V+ RL D ++ W+ A I D + + Sbjct: 74 SGYPKVQVRLLDKLNQTVDNCNFDINLQKVSEQWQ--ASLIVDQVLTRFFKSQRFTQPAL 131 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 S+I F + K + + D DG N+R T + I PR+SP+ + + Y Y Sbjct: 132 TTSQIAFCA----RVNGKKEIYLCDLDGNNLRKKTNFKS-ITALPRWSPDNRYLVYTVYG 186 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS- 291 + ++ D ++ + + ++R M F G ++++ K ++D+Y +DL + Sbjct: 187 -KASTNIFQTDLNSNKH-RILSHYRGMNTGAAFRPKGNAIVMTLSKGNSVDLYWMDLNNI 244 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREG------KEQLYVMQSNGSDQKRISQDK 345 T RLT T + S +SP +QI + S +LYVM ++ K + + Sbjct: 245 GKTGRLTKTTSLESSPVFSPSGAQICYVSSSVSSSGKVSTPRLYVMNASKLTTKPL-FND 303 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVED-SNLQAPTWSPSGR 402 + P WS +L+ ++K G ++ I E+++ + + +AP+WSP GR Sbjct: 304 RSERVSPDWSKTSNLLVYSKKMGRQYVIATCDPKNPSGTEKIISKTAGHWEAPSWSPDGR 363 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWV 443 ++ +R G+ +LY +D + INT + S P W Sbjct: 364 HIVCTRDTGGEK--QLYIVDTLYKTSRKINTTLKHCSSPSWS 403 >gi|57237119|ref|YP_178131.1| translocation protein TolB [Campylobacter jejuni RM1221] gi|205356487|ref|ZP_03223251.1| periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|67461888|sp|Q5HX54|TOLB_CAMJR RecName: Full=Protein tolB; Flags: Precursor gi|57165923|gb|AAW34702.1| tolB protein, putative [Campylobacter jejuni RM1221] gi|205345674|gb|EDZ32313.1| periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315057552|gb|ADT71881.1| tolB protein precursor [Campylobacter jejuni subsp. jejuni S3] Length = 402 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 69/416 (16%), Positives = 160/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + T ++ + + SL ++ G D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNV------KIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|157414425|ref|YP_001481681.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni 81116] gi|283955556|ref|ZP_06373051.1| TolB protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|157385389|gb|ABV51704.1| TolB protein, putative [Campylobacter jejuni subsp. jejuni 81116] gi|283793017|gb|EFC31791.1| TolB protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|307747069|gb|ADN90339.1| Protein tolB [Campylobacter jejuni subsp. jejuni M1] gi|315931506|gb|EFV10473.1| tol-Pal system beta propeller repeat protein TolB [Campylobacter jejuni subsp. jejuni 327] Length = 402 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 69/416 (16%), Positives = 160/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + T ++ + + SL ++ G D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNV------KIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|298676136|ref|YP_003727885.1| APHP domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298289124|gb|ADI75089.1| APHP domain protein [Methanohalobium evestigatum Z-7303] Length = 1914 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 102/251 (40%), Gaps = 14/251 (5%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR- 238 + + ++ +M+ DG++ LT +SP+ K+ Y D+ D+ Sbjct: 557 ILYKKDNTNGWYNVWIMNSDGSSQTALTNDAQSECAV--WSPSGSKIVYKHSDNSDLPED 614 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 V +M+ + + +S +G + +S I ++ + ++ Sbjct: 615 VIIMNPDGSNKETILTGQKYANRF-SWSPDGSKIAVSG-HIGNQGIRIINADGSGLTEIS 672 Query: 299 NTLF-INISAS----YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 F +SPD S+IV+ SD G +Y + +G+D+ +++ + A D Sbjct: 673 QGYFRPQTQPWQSQIWSPDGSKIVYHSDENGNRDIYTINIDGTDRTQLTTNS-AKDTDSF 731 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 +SP G I F I +M DGS + L ++ PTW+P G + FS + G Sbjct: 732 FSPDGSKIVFVSNREGNNDIWMMNVDGSNKTQLTVNSADDMYPTWNPDGTKIAFSSNRAG 791 Query: 413 DTGSKLYSIDL 423 ++ I+L Sbjct: 792 --NYDIWLIEL 800 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 14/274 (5%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 V + K + + D + + I PR+SP+ K+ Y + Sbjct: 511 IVFGKSIPTEEKYDIYKVSVD-NKYESVLTNLPNIEGHPRWSPDGNKILYKKDNTNGWYN 569 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATER 296 V++M++ + +S +S +G + + S D D+ ++ + E Sbjct: 570 VWIMNSDGSSQTALTNDAQSE--CAVWSPSGSKIVYKHSDNSDLPEDVIIMNPDGSNKET 627 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP---- 352 + S+SPD S+I S G + + ++ ++GS ISQ P Sbjct: 628 ILTGQKYANRFSWSPDGSKIA-VSGHIGNQGIRIINADGSGLTEISQGYFRPQTQPWQSQ 686 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKD 411 +WSP G I + I + DG+ L +S ++ SP G ++F ++ Sbjct: 687 IWSPDGSKIVYHSDENGNRDIYTINIDGTDRTQLTTNSAKDTDSFFSPDGSKIVFVSNRE 746 Query: 412 GDTGSKLYSIDLNGRNETLINTP-AYASDPQWVG 444 G + ++ ++++G N+T + A P W Sbjct: 747 G--NNDIWMMNVDGSNKTQLTVNSADDMYPTWNP 778 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 96/207 (46%), Gaps = 8/207 (3%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I++ + + +M+ DG+N + + +SP+ K+A + + Sbjct: 599 SKIVYKHSDNSD--LPEDVIIMNPDGSNKETILTGQKYANRF-SWSPDGSKIAVSGHIGN 655 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMIL---APRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +R+ D + G FR + +S +G + + ++ DIY++++ Sbjct: 656 QGIRIINADGSGLTEISQ-GYFRPQTQPWQSQIWSPDGSKIVYHSDENGNRDIYTINIDG 714 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 +LT + + +SPD S+IVF S+REG +++M +GS++ +++ + A Sbjct: 715 TDRTQLTTNSAKDTDSFFSPDGSKIVFVSNREGNNDIWMMNVDGSNKTQLTVNS-ADDMY 773 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 P W+P G IAF+ + I +++ Sbjct: 774 PTWNPDGTKIAFSSNRAGNYDIWLIEL 800 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 98/297 (32%), Gaps = 29/297 (9%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG-------ANIRYLTPSRD 211 +D G N+ + FV G DG N + Sbjct: 364 ADVNVLQGGSPSGWCNAYVSFVDPDNGWGK-HYGFVGFGADGIIKNDIDYNFNQWYHVKI 422 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + +V A DD+ I + R+ S R Sbjct: 423 ETDMI-------NRVYSAWIDDKLIGSNLPISEDGYYKGIRLSGENSGDT---------R 466 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD--REGKEQLY 329 L K S + E+ T + + +SP ++IVF E K +Y Sbjct: 467 ILFDNVKVYEYGDSSYNGIVKKIEQFTFNPEKDSNPVWSPTGNEIVFGKSIPTEEKYDIY 526 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGSQERLLVE 388 + + + ++ P WSP G+ I + K + + + +M DGS + L Sbjct: 527 KVSVDNKYESVLTNLPN-IEGHPRWSPDGNKILYKKDNTNGWYNVWIMNSDGSSQTALTN 585 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 D+ + WSPSG +++ + D + ++ +G N ET++ YA+ W Sbjct: 586 DAQSECAVWSPSGSKIVYKHSDNSDLPEDVIIMNPDGSNKETILTGQKYANRFSWSP 642 Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 77/187 (41%), Gaps = 17/187 (9%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I++ S+ + + ++ DG + R + + FSP+ K+ + + + Sbjct: 693 SKIVYHSDENGN----RDIYTINIDGTD-RTQLTTNSAKDTDSFFSPDGSKIVFVSNREG 747 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL-QSNA 293 + +++M+ ++ + + P ++ +G + S + DI+ ++L + Sbjct: 748 NN-DIWMMNVD-GSNKTQLTVNSADDMYPTWNPDGTKIAFSSNRAGNYDIWLIELKEDIN 805 Query: 294 TERLTNTLFINISASYSPDSSQ---IVFESDREGKEQLYVMQSNGSDQKRISQDKE-ASY 349 + N I ++ S + + IV SD +G Y + +G I+ + + ++ Sbjct: 806 HRPVIND--IQVNPSTIFEGNSCDIIVDASDPDGDNLNYYYEPSGGK---ITGEGDKVTW 860 Query: 350 FDPVWSP 356 SP Sbjct: 861 TSDKASP 867 >gi|86151349|ref|ZP_01069564.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315123714|ref|YP_004065718.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841696|gb|EAQ58943.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|315017436|gb|ADT65529.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 402 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 69/416 (16%), Positives = 160/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + T ++ + + SL ++ G D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNV------KIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNTLGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|94970959|ref|YP_593007.1| WD-40-like beta propeller repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94553009|gb|ABF42933.1| WD40-like beta Propeller [Candidatus Koribacter versatilis Ellin345] Length = 298 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 15/246 (6%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L + DG N LT D +P +SP+ + VA+ E + +++LMD Sbjct: 56 AGKEQLFRVGLDGKNPLQLTRD-DADHEDPAWSPDGKHVAFVLI-HEKVEQIHLMDPD-G 112 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLTNTL 301 + S + P +S + +R + D A DI ++D+ ++ T +L + Sbjct: 113 GNVTPLTPKESKTIHPSWSPDSRRVIFCTDDDLAPPKKNDSDILAMDIATHETTKLISG- 171 Query: 302 FINISASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +N +SPD +++ F E ++++ NGSD K ++ D A P WSP G Sbjct: 172 GVNTFPVWSPDGTKLAFRRMLGERNSEVFLANENGSDPKNLTND-PAFDGWPAWSPDGKQ 230 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGS--K 417 IAF I VM DGS R +P WS G+ L F+ K D G + Sbjct: 231 IAFASNRRGNHEIFVMNADGSGVRKAANSEGRATSPKWSKDGKKLYFTNCKKVDLGIDCE 290 Query: 418 LYSIDL 423 +Y+ID+ Sbjct: 291 IYAIDV 296 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 15/239 (6%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 +P FSP+ +++ Y + + P ++ + P +S +GK Sbjct: 37 NMDPTFSPDGKEMIYISVVAGK--EQLFRVGLDGKNPLQLTRDDADHEDPAWSPDGKHVA 94 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------Q 327 + ++ I+ +D LT I S+SPDS +++F +D + Sbjct: 95 FVLIHEKVEQIHLMDPDGGNVTPLTPKESKTIHPSWSPDSRRVIFCTDDDLAPPKKNDSD 154 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLL 386 + M + ++ ++ PVWSP G +AF + GE + + ++GS + L Sbjct: 155 ILAMDIATHETTKLISGGVNTF--PVWSPDGTKLAFRRMLGERNSEVFLANENGSDPKNL 212 Query: 387 VEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 D P WSP G+ + F+ + G +++ ++ +G N+ A+ P+W Sbjct: 213 TNDPAFDGWPAWSPDGKQIAFASNRRG--NHEIFVMNADGSGVRKAANSEGRATSPKWS 269 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 9/194 (4%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + + P FS +GK + ++ V L +LT + ++SPD + Sbjct: 35 TQNMDPTFSPDGKEMIYISVVAGKEQLFRVGLDGKNPLQLTRDDADHEDPAWSPDGKHVA 94 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKF 371 F E EQ+++M +G + ++ KE+ P WSP + F Sbjct: 95 FVLIHEKVEQIHLMDPDGGNVTPLTP-KESKTIHPSWSPDSRRVIFCTDDDLAPPKKNDS 153 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETL 430 I M + L+ P WSP G L F R+ G+ S+++ + NG + L Sbjct: 154 DILAMDIATHETTKLISGGVNTFPVWSPDGTKLAF-RRMLGERNSEVFLANENGSDPKNL 212 Query: 431 INTPAYASDPQWVG 444 N PA+ P W Sbjct: 213 TNDPAFDGWPAWSP 226 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 1/144 (0%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R++F ++ ++ KN ++ D A + P +SP+ K+A+ E Sbjct: 136 RVIFCTDDDLAPPKKNDSDILAMDIATHETTKLISGGVNTFPVWSPDGTKLAFRRMLGER 195 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 V+L + PK + N + P +S +GK+ + + +I+ ++ + Sbjct: 196 NSEVFLAN-ENGSDPKNLTNDPAFDGWPAWSPDGKQIAFASNRRGNHEIFVMNADGSGVR 254 Query: 296 RLTNTLFINISASYSPDSSQIVFE 319 + N+ S +S D ++ F Sbjct: 255 KAANSEGRATSPKWSKDGKKLYFT 278 >gi|269126248|ref|YP_003299618.1| serine/threonine protein kinase [Thermomonospora curvata DSM 43183] gi|268311206|gb|ACY97580.1| serine/threonine protein kinase [Thermomonospora curvata DSM 43183] Length = 676 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 106/252 (42%), Gaps = 12/252 (4%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 GA + P++SP + ++A+ + V++++ A ++ Sbjct: 429 GARAARPLLEGEGCDVLPQWSPRRDRIAFTRWSGGATSEVWVVNPDGGGAERKADGINGR 488 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +S +G + + +DL + E+LT+ + ++S D ++ F Sbjct: 489 SR-VAWSPDGASLAAMTRTGGRAQLSVIDLSDGSVEQLTDDRSVKDDPTWSRDG-KLAFW 546 Query: 320 SDREGKEQLYVMQSNGSDQK--RISQDK--EASYFDPVWSPQGDLIAFTKFS--GEKFAI 373 S R+G +QLY + ++ +++ + DP+WSP G +AFT + G I Sbjct: 547 SRRDGSQQLYWLDPADPQRRWRQVTTRRVAPHGANDPIWSPDGRWLAFTVMNEAGHGHDI 606 Query: 374 GVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLI 431 V++ DG+ R L ++ P+WSP G+ L F + +++++ ++ G+ Sbjct: 607 AVIRADGTGYRRLTTGPAHDMDPSWSPDGKWLAFV--RGPVATPQIWAMPVDAGQARARP 664 Query: 432 NTPAYASDPQWV 443 P P W Sbjct: 665 VGPLAVGHPDWS 676 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 17/236 (7%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 ++ R ++ + SG + + V++ DG + +SP+ +A T Sbjct: 448 WSPRRDRIAFTRWSGGATSEVWVVNPDGGGAERKADGINGRSRV-AWSPDGASLAAMTRT 506 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS- 291 + D + +++ + RS+ P +S +GK ++D + +Y +D Sbjct: 507 GGRAQLSVI--DLSDGSVEQLTDDRSVKDDPTWSRDGK-LAFWSRRDGSQQLYWLDPADP 563 Query: 292 -NATERLTN-----TLFINISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQ 343 ++T + +SPD + F ++ + V++++G+ +R++ Sbjct: 564 QRRWRQVTTRRVAPHGAND--PIWSPDGRWLAFTVMNEAGHGHDIAVIRADGTGYRRLTT 621 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWS 398 A DP WSP G +AF + I M D Q R V + P WS Sbjct: 622 -GPAHDMDPSWSPDGKWLAFVRGPVATPQIWAMPVDAGQARARPVGPLAVGHPDWS 676 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 10/209 (4%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLF 302 T RA + + + P++S R + A +++ V+ ER + + Sbjct: 427 TPGARAARPLLEGEGCDVLPQWSPRRDRIAFTRWSGGATSEVWVVNPDGGGAERKADGIN 486 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++SPD + + + G+ QL V+ + ++++ D+ DP WS G +A Sbjct: 487 GRSRVAWSPDGASLAAMTRTGGRAQLSVIDLSDGSVEQLTDDRSVKD-DPTWSRDGK-LA 544 Query: 363 FTKFSGEKFAIGVMKKDGSQER------LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 F + + Q R V P WSP GR L F+ + G Sbjct: 545 FWSRRDGSQQLYWLDPADPQRRWRQVTTRRVAPHGANDPIWSPDGRWLAFTVMNEAGHGH 604 Query: 417 KLYSIDLNGRNETLINT-PAYASDPQWVG 444 + I +G + T PA+ DP W Sbjct: 605 DIAVIRADGTGYRRLTTGPAHDMDPSWSP 633 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 52/183 (28%), Gaps = 9/183 (4%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES----VVSGIIK 190 D + A I +SD + +T ++ + + Sbjct: 496 DGASLAAMTRTGGRAQLSVI--DLSDGSVEQLTDDRSVKDDPTWSRDGKLAFWSRRDGSQ 553 Query: 191 NSLCVMDRDGAN-IRYLTPSR--DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + D R +T R +P +SP+ + +A+ ++ + Sbjct: 554 QLYWLDPADPQRRWRQVTTRRVAPHGANDPIWSPDGRWLAFTVMNEAGHGHDIAVIRADG 613 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 +R+ + + P +S +GK I+++ + + Sbjct: 614 TGYRRLTTGPAHDMDPSWSPDGKWLAFVRGPVATPQIWAMPVDAGQARARPVGPLAVGHP 673 Query: 308 SYS 310 +S Sbjct: 674 DWS 676 >gi|121613592|ref|YP_999836.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni 81-176] gi|167004807|ref|ZP_02270565.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni 81-176] gi|87250020|gb|EAQ72978.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 402 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 159/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + T ++ + + SL ++ D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNV------KIKAGSSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLASVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGVQSALGVIRVNAN 385 >gi|62548395|gb|AAX86840.1| TolB [Aggregatibacter actinomycetemcomitans] Length = 183 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 11/191 (5%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 AP FS +G R + KD ++IY +L S +LT+ N S+SPD I Sbjct: 1 PGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQVSQLTSGAGNNTEPSWSPDGQSI 60 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SDR G Q+Y M ++G I S G+L+ + I Sbjct: 61 VFTSDRGGSPQVYRMSASGGGASLI-----GGRGSGQISSDGNLLVMVDVNN---NIVKK 112 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPA 435 +L ++P+ SP+G +I+S + G L + +GR + L Sbjct: 113 DLTSGSSEVLSSTFLDESPSISPNGIMVIYSSTQG--LGKVLQLVSTDGRFKARLPGNDG 170 Query: 436 YASDPQWVGFM 446 P W ++ Sbjct: 171 QVKFPAWSPYL 181 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 12/184 (6%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P FSP+ ++A+A+ D +L +Y+ + + + + + P +S +G+ + + Sbjct: 7 PAFSPDGSRLAFASSKDG-VLNIYVTNLGSGQVSQ-LTSGAGNNTEPSWSPDGQSIVFTS 64 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + + +Y + + S S D + +V + + Sbjct: 65 DRGGSPQVYRMSASGGGASLI----GGRGSGQISSDGNLLVMV---DVNNNIVKKDLTSG 117 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAP 395 + +S P SP G ++ ++ G + ++ DG + RL D ++ P Sbjct: 118 SSEVLSSTF--LDESPSISPNGIMVIYSSTQGLGKVLQLVSTDGRFKARLPGNDGQVKFP 175 Query: 396 TWSP 399 WSP Sbjct: 176 AWSP 179 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 11/157 (7%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G+ S EP +SP+ Q + + + D +VY M A G Sbjct: 34 GSGQVSQLTSGAGNNTEPSWSPDGQSIVFTS-DRGGSPQVYRMSASGGGASLIGGRGSGQ 92 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I SS+G ++ D +I DL S ++E L++T F++ S S SP+ +++ Sbjct: 93 I-----SSDGNLLVMV---DVNNNIVKKDLTSGSSEVLSST-FLDESPSISPNGIMVIYS 143 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 S + + L ++ ++G + R+ + P WSP Sbjct: 144 STQGLGKVLQLVSTDGRFKARL-PGNDGQVKFPAWSP 179 >gi|320101787|ref|YP_004177378.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] gi|319749069|gb|ADV60829.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] Length = 365 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 102/277 (36%), Gaps = 35/277 (12%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLMDTRIDRAPKRIGNFRSM 259 NIR +T + FSP+ ++ + ++Y+ + + D PK + R Sbjct: 44 TNIRQVTYGFAKAGEG-YFSPDGSRIIFQAAPQGKEDYQIYVAELKPDAQPKMVSTGRGK 102 Query: 260 ILAPRFSSNGKRALISVQK----------------------------DEAMDIYSVDLQS 291 F +G+ + + DE M+I+ DL+ Sbjct: 103 CTCAFFHPDGQSIIFASSHLDPKLDQPAEPRAKSPAYSRDARYRWDFDEWMEIFRADLEG 162 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 RLT+ + SYSPD IVF S R+G ++Y+M ++G + +RI+ Sbjct: 163 GNLVRLTDAPGYDAEGSYSPDGKSIVFTSFRDGDAEIYIMDADGRNPRRITH-APGYDGG 221 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMK--KDGSQERLLV-EDSNLQAPTWSPSGRSLIFSR 408 P +SP G I + + + +G ER L D+ P + P G ++S Sbjct: 222 PFFSPDGKRIIYRSDRKGNDLLQIFDNSVEGDDERQLTSNDAVNWGPYYHPDGEFFVYST 281 Query: 409 KKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 G ++Y L G L + P + Sbjct: 282 SIHGHQNYEVYMQSLKTGAMTRLTYVEGFDGLPVFSP 318 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 105/249 (42%), Gaps = 12/249 (4%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR----FSPNQQKVAYATYDDEDILRV 239 V +G K + DG +I + + D L +P SP + A +D ++ + + Sbjct: 96 VSTGRGKCTCAFFHPDGQSIIFASSHLDPKLDQPAEPRAKSPAYSRDARYRWDFDEWMEI 155 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + D R+ + +S +GK + + +D +IY +D R+T+ Sbjct: 156 FRADLEGGNLV-RLTDAPGYDAEGSYSPDGKSIVFTSFRDGDAEIYIMDADGRNPRRITH 214 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQ 357 + +SPD +I++ SDR+G + L + G D+++++ + ++ P + P Sbjct: 215 APGYDGGPFFSPDGKRIIYRSDRKGNDLLQIFDNSVEGDDERQLTSNDAVNW-GPYYHPD 273 Query: 358 GDLIAFTKFSGE--KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK-KDGD 413 G+ ++ + + + L + P +SP GR L+++ K + D Sbjct: 274 GEFFVYSTSIHGHQNYEVYMQSLKTGAMTRLTYVEGFDGLPVFSPDGRKLMWTSKGRTAD 333 Query: 414 TGSKLYSID 422 S+L+ D Sbjct: 334 NTSQLFIAD 342 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 6/116 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI++ S+ G + +G + R LT S D + + P + P+ + Y+T Sbjct: 230 RIIYRSDR--KGNDLLQIFDNSVEGDDERQLT-SNDAVNWGPYYHPDGEFFVYSTSIHGH 286 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV---QKDEAMDIYSVD 288 M + A R+ P FS +G++ + + D ++ D Sbjct: 287 QNYEVYMQSLKTGAMTRLTYVEGFDGLPVFSPDGRKLMWTSKGRTADNTSQLFIAD 342 >gi|218516344|ref|ZP_03513184.1| translocation protein TolB [Rhizobium etli 8C-3] Length = 133 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 62/133 (46%), Positives = 92/133 (69%), Gaps = 1/133 (0%) Query: 36 VKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPD 95 V + N P+ IA T F+ ++G +VS+V++ DLQRS +F I++ +F +KI+NPD Sbjct: 2 VTLDLRKGNVQPMPIAVTDFL-QGDMGAQVSQVIAADLQRSGLFAPINKSAFIEKISNPD 60 Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 + PRF+DW + AQ LVTGRV +E RLR EFRLWD +Q+ G++F++ P +WR++A Sbjct: 61 ASPRFEDWKVINAQALVTGRVTQEADGRLRAEFRLWDPFAGQQMTGQQFYTQPENWRRVA 120 Query: 156 HTISDDIYQSITG 168 H I+D IY+ ITG Sbjct: 121 HIIADAIYKQITG 133 >gi|86149640|ref|ZP_01067870.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839908|gb|EAQ57167.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni CF93-6] Length = 402 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 160/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + T ++ + + SL ++ G D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNV------KIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A + +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|18395019|ref|NP_564147.1| unknown protein [Arabidopsis thaliana] gi|5263319|gb|AAD41421.1|AC007727_10 ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and gb|N65244 come from this gene [Arabidopsis thaliana] gi|15028243|gb|AAK76710.1| unknown protein [Arabidopsis thaliana] gi|23297034|gb|AAN13226.1| unknown protein [Arabidopsis thaliana] gi|332192017|gb|AEE30138.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana] Length = 706 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 78/396 (19%), Positives = 136/396 (34%), Gaps = 57/396 (14%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++ +S + P + F S V + G D VE L+D+ R + I Sbjct: 297 PLTTESVTIQRVTPPGVHAFTPATSPNNHEFVAVATRRPGSDYRHVE--LFDL-KRNEFI 353 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 +P S D +GD N R + L + DG Sbjct: 354 ELTRLVAPKSHHLNPFLSPDSSRVGYHSCRGDANGRRSPLLFLENIQTTTRDLSLFRIDG 413 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + P FSP ++AY + V+++ + ++ M Sbjct: 414 S--------------FPSFSPGGDRIAYV-----KMPGVFVVKPDGSGQREV---YKGMA 451 Query: 261 LAPRFSSNGKRALISVQKDEAM------DIYSVDLQ----SNATERLTNTLFINISASYS 310 + + + S D+ S+D+ S++ RLT N S Sbjct: 452 FSTAWDPVRPGIVYSSSGPTFATERTEVDVISIDVDAADKSSSVRRLTTNGKNNAFPWPS 511 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS- 367 PD +IVF S R G + LY+M + + + + E ++ D WSP G+ IAF Sbjct: 512 PDGKRIVFRSGRTGHKNLYIMDAEKGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRE 571 Query: 368 ---GEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKDG--------- 412 F + ++ +G+ R L+ P +SP +SL+F+ G Sbjct: 572 SPGSGSFELFLIHPNGTGLRKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNP 631 Query: 413 ---DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 ++++ L+G N + +Y P W Sbjct: 632 HHYQPYGDIFTVKLDGSNVRRLTHNSYEDGTPAWAP 667 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 81/258 (31%), Gaps = 36/258 (13%) Query: 220 SPNQQKVAYATYDDEDILR------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 S + + + Y + + VY + + +R+ +P S +G Sbjct: 166 SLSGEFIVYVSTHESSGEPRASWTAVYSTELKTG-LTRRLTPSGVADFSPAVSPSGNLTA 224 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-------ASYSPDSSQIVF--ESDREG 324 ++ + +L+++ LT + + D S + F S+ +G Sbjct: 225 VASYGERGWTGEVEELRTDIYVFLTRDGSHRVKVVEHGGWPCWV-DESTLYFHRRSEEDG 283 Query: 325 KEQLY--VMQSNGS------DQKRISQDKEASYFDPVWSPQG-DLIAFTKFSGEK--FAI 373 +Y ++ NG +R++ + F P SP + +A + Sbjct: 284 WISVYRAILPENGPLTTESVTIQRVTPPGVHA-FTPATSPNNHEFVAVATRRPGSDYRHV 342 Query: 374 GVMKKDGSQ----ERLLVEDSNLQAPTWSPSGRSLIFSRKKD---GDTGSKLYSIDLNGR 426 + ++ RL+ S+ P SP + + + G L+ ++ Sbjct: 343 ELFDLKRNEFIELTRLVAPKSHHLNPFLSPDSSRVGYHSCRGDANGRRSPLLFLENIQTT 402 Query: 427 NETLINTPAYASDPQWVG 444 L S P + Sbjct: 403 TRDLSLFRIDGSFPSFSP 420 Score = 38.8 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 28/186 (15%) Query: 263 PRFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P S G+ + + + + +YS +L++ T RLT + + S + SP + Sbjct: 165 PSLS--GEFIVYVSTHESSGEPRASWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNL 222 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASY------FDPVWSPQGDLIAFTKFSGE 369 S E V + +++D P W + F + S E Sbjct: 223 TAVASYGERGWTGEVEELRTDIYVFLTRDGSHRVKVVEHGGWPCWV-DESTLYFHRRSEE 281 Query: 370 KFAIGVMKK----DG-------SQERLLVEDSNLQAPTWSPSG-RSLIFSRKKDGDTGSK 417 I V + +G + +R+ + P SP+ + + ++ G Sbjct: 282 DGWISVYRAILPENGPLTTESVTIQRVTPPGVHAFTPATSPNNHEFVAVATRRPGSDYRH 341 Query: 418 LYSIDL 423 + DL Sbjct: 342 VELFDL 347 >gi|305664788|ref|YP_003861075.1| hypothetical protein FB2170_00745 [Maribacter sp. HTCC2170] gi|88707910|gb|EAR00149.1| hypothetical protein FB2170_00745 [Maribacter sp. HTCC2170] Length = 502 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 18/234 (7%) Query: 193 LCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + +G + T ++I + SP+ ++ + + +Y + PK Sbjct: 269 LYKIYVEGGVPEMIPTDFANKINNDHGISPDGTQMVISDQTETGQSMIYSIPIE-GGVPK 327 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I S +S +GK ++++ DIY++ ++ RLT+T ++ YSP Sbjct: 328 KITPLASSYWH-GWSPDGKTLAYCAERNDNYDIYTIPIKGGEETRLTSTEGLDDGPDYSP 386 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---- 367 D I F S R G Q++ M+++GS+Q++I+ DK +F SP G +A+ F+ Sbjct: 387 DGKYIYFNSTRTGTMQIWRMKTDGSEQEQITTDKYNDWFA-HPSPDGKWLAYVTFNTDVP 445 Query: 368 ------GEKFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKKD 411 + + +M + + +L + + P+WSP + F Sbjct: 446 AGDHPPNKDVMLRLMNIETREVTVLAKIFGGQGTINVPSWSPDSGRIAFVSYTQ 499 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 21/210 (10%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--INIS 306 K + + I AP ++ +GK + + Q +Y + ++ E + IN Sbjct: 238 NRKVVHQPKEHIEAPNWTPDGKTLIYNSQG----LLYKIYVEGGVPEMIPTDFANKINND 293 Query: 307 ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SPD +Q+V SD+ G+ +Y + G K+I+ AS + WSP G +A+ Sbjct: 294 HGISPDGTQMV-ISDQTETGQSMIYSIPIEGGVPKKITPL--ASSYWHGWSPDGKTLAYC 350 Query: 365 KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + I + G +E L P +SP G+ + F+ + G +++ + Sbjct: 351 AERNDNYDIYTIPIKGGEETRLTSTEGLDDGPDYSPDGKYIYFNSTRTGTM--QIWRMKT 408 Query: 424 NGRNETLINTPAY-------ASDPQWVGFM 446 +G + I T Y + D +W+ ++ Sbjct: 409 DGSEQEQITTDKYNDWFAHPSPDGKWLAYV 438 >gi|315929958|gb|EFV09112.1| tol-Pal system beta propeller repeat protein TolB [Campylobacter jejuni subsp. jejuni 305] Length = 404 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 67/417 (16%), Positives = 159/417 (38%), Gaps = 35/417 (8%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 MK + + LV +G + + V + + + +S + L ++ Sbjct: 2 KMKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVN 59 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S F +++ + ++ + + SL ++ G D+ + L Sbjct: 60 DLKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNV------KIKAGGSDKSEQTYTL- 112 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 + + +AH ++ D+ + ++ + S K+ Sbjct: 113 --------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKS 156 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 157 QIIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASK 214 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-S 310 + + M++A + +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 215 ILSSG-GMVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIG 273 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 274 SDDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQ 330 Query: 371 ---FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 331 AGVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 387 >gi|88597176|ref|ZP_01100411.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218561793|ref|YP_002343572.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|32699721|sp|Q9PJ14|TOLB_CAMJE RecName: Full=Protein tolB; Flags: Precursor gi|88190237|gb|EAQ94211.1| tolB protein, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112359499|emb|CAL34283.1| putative TolB precursor protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926950|gb|EFV06312.1| tol-Pal system beta propeller repeat protein TolB [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 402 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 159/416 (38%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F +++ + ++ + + SL ++ G D+ + L Sbjct: 59 LKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNV------KIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A + +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|305432653|ref|ZP_07401814.1| translocation protein TolB [Campylobacter coli JV20] gi|304444364|gb|EFM37016.1| translocation protein TolB [Campylobacter coli JV20] Length = 403 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 73/419 (17%), Positives = 159/419 (37%), Gaps = 40/419 (9%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDE--LGGKVSEVVS 70 MK + + L+ +G + V NS P I ++ + L ++ Sbjct: 1 MKKIVTVFLIFLGILW---AEDPVIDVVNSGVVLP-KIIVKDNSNLSDINLKRSFYNIIV 56 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S F ++S S + + F+ S L L V+ + Sbjct: 57 NDLKVSSNFEVVSDAS------SEAANYTFEYDLSKNGNAL-----------NLHVKIK- 98 Query: 131 WDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 + + + +S + +AH ++ ++ + ++ + S Sbjct: 99 ---AGGLEKSSQTYALNSVEQYPFLAHKSVKASVNALGLAPVEWMDHKILIARNSSS--K 153 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+ + + D + + + P++ +Q + Y T D D +Y D R ++A Sbjct: 154 KSQIIMADYTLTYQKVIIDG--GLNLFPKWGNKEQSIFYYTAYDHDRPTLYRYDLRTNKA 211 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + + M++A S +G + L+++ + D+Y DL S +LTN I+++ ++ Sbjct: 212 SKILASG-GMVVASDVSLDGSKLLVTMAPKDQPDVYLYDLNSKNLTQLTNYSGIDVNGNF 270 Query: 310 -SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 D S+ VF SDR G +++ N ++ + + S D + ++ Sbjct: 271 IGVDDSKFVFVSDRLGYPNIFIQNLNNGSAEQAVFHGKNN---SAVSTYKDFLVYSSREP 327 Query: 369 EK---FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + F I +M + + R + P +S G S++F + + + ++ N Sbjct: 328 NQVGVFNIYLMSINSTGIRQFTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 386 >gi|182416392|ref|YP_001821458.1| periplasmic component of the Tol biopolymer transport system-like protein [Opitutus terrae PB90-1] gi|177843606|gb|ACB77858.1| Periplasmic component of the Tol biopolymer transport system-like protein [Opitutus terrae PB90-1] Length = 410 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 66/305 (21%), Positives = 127/305 (41%), Gaps = 17/305 (5%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI--TGEKGDFNSRILFVSESVVSGIIKN 191 + + FS + + + H +D + G KG F +++ F+ E K Sbjct: 105 GSGGTPVASQVFSGANARQALLH-AADFAVEQTNGMGLKGFFTAQLAFIGERTG----KK 159 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + D + +T + + PR++P+ ++ Y ++ ++ +D + Sbjct: 160 EVYTADLFFGGAKQITRD-NALALMPRWAPDGNRLLYTSFFKSGFPDIFQIDLSTYQRTT 218 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +F+ RFS NG++ + + + +IY + Q R T + + S +SP Sbjct: 219 FV-SFKGTNSGARFSPNGQQVAMVLSGEGTPEIYLSNAQGRQVSRKTRSDAVKSSPCFSP 277 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS-PQGDLIAFTKFSGEK 370 D S+IVF E QLYVM G RI+ +P WS + IAFT +G Sbjct: 278 DGSRIVFA--MEPGPQLYVMSVAGGVPSRITSGISRYCAEPDWSRANPNKIAFTMRAGG- 334 Query: 371 FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNE 428 + IGV+ + + + + P+W GR L+++ + S + +D G++ Sbjct: 335 YQIGVLDLSTRKGAQVSKAPFDGIEPSWLADGRHLVYTARD--RRSSVICILDTETGKSV 392 Query: 429 TLINT 433 + T Sbjct: 393 RVSPT 397 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 7/174 (4%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V+SG + + + G + T S D + P FSP+ ++ +A E ++Y+M Sbjct: 241 VLSGEGTPEIYLSNAQGRQVSRKTRS-DAVKSSPCFSPDGSRIVFA---MEPGPQLYVMS 296 Query: 244 TRIDRAPKRIGNFRSMILAPRFS-SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + P +S +N + +++ I +DL + +++ F Sbjct: 297 VAGGVPSRITSGISRYCAEPDWSRANPNKIAFTMRAGG-YQIGVLDLSTRKGAQVSKAPF 355 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWS 355 I S+ D +V+ + + ++ + R+S + VW+ Sbjct: 356 DGIEPSWLADGRHLVYTARDRRSSVICILDTETGKSVRVSPTSFGNVMQASVWT 409 >gi|162448922|ref|YP_001611289.1| tolB protein [Sorangium cellulosum 'So ce 56'] gi|161159504|emb|CAN90809.1| tolB protein [Sorangium cellulosum 'So ce 56'] Length = 444 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 153/400 (38%), Gaps = 26/400 (6%) Query: 38 VATNSANYSPVS-IAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDS 96 + + P+ I + D + VV +DL+ F ++ + + DS Sbjct: 44 ITVVAGATRPLPKIGVLPSLVSDPEDVTIHSVVRRDLELCGEFEVLPDSAAPDGLYLSDS 103 Query: 97 IPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPASWRKIA 155 + W++ G + +V+ K D++ + + + V + + KKF R + Sbjct: 104 PVDVKAWSAKGVEAVVSVSGKKVAADKVELVGQAFLVNRGQAPVFDKKFIVPLRDVRFES 163 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H ++D + ++TG+ G F S + F S S + +D DG + R ++P DQ Sbjct: 164 HRVADQLIGALTGQNGGFASHMTFASGSGS----LRRVFTIDADGHDARAVSP-PDQTAI 218 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P F N+Q + YA D +V+ P + + FS + + +S Sbjct: 219 APAFGKNEQ-LHYAASVKGDEYKVFTPAGGPLPLP-----VKGSVYGIAFSKDRAQVALS 272 Query: 276 VQKDEAMDIYS-VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + + ++S DLQS + + + + ++P ++ F + +++YV Sbjct: 273 IGVGSTIKLFSGPDLQSIKP---ASEVGMALHPVFTPTG-KLAFSGEGRYGQRIYVGD-- 326 Query: 335 GSDQKRISQDK-EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNL 392 K IS D AS P G + G+ + + G L Sbjct: 327 ----KAISPDGLFASAPTFCNHPDGVKAVYAVGVGKNTDLVASGETGGGLVRLTQNQGRN 382 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 P SP GR + F + G LY + ++G+ I+ Sbjct: 383 GYPACSPDGRLVAFFSTRTSGEGPGLYVMRVDGQRPKRIS 422 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 14/162 (8%) Query: 200 GANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 G +++ + P+ + + P F+P K+A+ + + R+Y+ D K I Sbjct: 284 GPDLQSIKPASEVGMALHPVFTPTG-KLAF-SGEGRYGQRIYVGD-------KAISPDGL 334 Query: 259 MILAPRF--SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 AP F +G +A+ +V + D+ + RLT N + SPD + Sbjct: 335 FASAPTFCNHPDGVKAVYAVGVGKNTDLVASGETGGGLVRLTQNQGRNGYPACSPDGRLV 394 Query: 317 VFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 F S R LYVM+ +G KRIS S P Sbjct: 395 AFFSTRTSGEGPGLYVMRVDGQRPKRISNLLGDSLRWDPLPP 436 >gi|159901044|ref|YP_001547291.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894083|gb|ABX07163.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 642 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 12/270 (4%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + S +L +D + + P D R + +VAY+ D L Sbjct: 378 IISSREGNSGAYNLLSLDIPTGAVSEVVPHHDDNAIASRRRSDG-RVAYSHGV--DGLEQ 434 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQSNATE 295 + +++ + APR+S +G + +D + DIY +D + + Sbjct: 435 IFTISANGSDEQQLTSAPGESRAPRWSPDGSKIAFESDRDHSNNNSFDIYIMDADGSNVQ 494 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R+T ++SPD +++ F S G ++ V+ ++++ + + S F WS Sbjct: 495 RVTAEGGWQGGPAWSPDGTKLAFHSQTSGLYEIVVLDL-TTNKQYLLASVDDSAFWADWS 553 Query: 356 PQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDG 412 P G IAF T + + I + G + R L + P WSP GR L F ++ Sbjct: 554 PDGQTIAFMTGDNDSRTKIYTVPTSGGEPRELTNLGTGKNRWPRWSPDGRYLAFESYRND 613 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 G L + G+ E L + + P W Sbjct: 614 HWGIYLQHL-ATGKVEALSDGTRHDRWPSW 642 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 12/233 (5%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + + + +D + + + +A R S+G R S D Sbjct: 372 SAEGDLIISSREGNSGAYNLLSLDIPTGAVSEVVPHHDDNAIASRRRSDG-RVAYSHGVD 430 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----LYVMQSNG 335 I+++ + ++LT+ + + +SPD S+I FESDR+ +Y+M ++G Sbjct: 431 GLEQIFTISANGSDEQQLTSAPGESRAPRWSPDGSKIAFESDRDHSNNNSFDIYIMDADG 490 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQ 393 S+ +R++ + P WSP G +AF + + I V+ +++ LL V+DS Sbjct: 491 SNVQRVTAEG-GWQGGPAWSPDGTKLAFHSQTSGLYEIVVLDLTTNKQYLLASVDDSAFW 549 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA--SDPQWVG 444 A WSP G+++ F D D+ +K+Y++ +G + P+W Sbjct: 550 A-DWSPDGQTIAFMTG-DNDSRTKIYTVPTSGGEPRELTNLGTGKNRWPRWSP 600 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 6/182 (3%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I F S+ S + +MD DG+N++ +T P +SP+ K+A+ + Sbjct: 465 SKIAFESDRDHSNNNSFDIYIMDADGSNVQRVTAEG-GWQGGPAWSPDGTKLAFHSQTSG 523 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNA 293 + + ++D ++ + + +S +G+ + D IY+V Sbjct: 524 -LYEIVVLDLTTNKQY-LLASVDDSAFWADWSPDGQTIAFMTGDNDSRTKIYTVPTSGGE 581 Query: 294 TERLTN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 LTN N +SPD + FES R +Y+ + +S P Sbjct: 582 PRELTNLGTGKNRWPRWSPDGRYLAFESYRNDHWGIYLQHLATGKVEALSDGTRH-DRWP 640 Query: 353 VW 354 W Sbjct: 641 SW 642 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 D++ ++ + + + G R LT PR+SP+ + +A+ +Y Sbjct: 551 DWSPDGQTIAFMTGDNDSRTKIYTVPTSGGEPRELTNLGTGKNRWPRWSPDGRYLAFESY 610 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D +YL + + + + P + Sbjct: 611 RN-DHWGIYLQHLATGK-VEALSDGTRHDRWPSW 642 >gi|319957282|ref|YP_004168545.1| translocation protein tolb [Nitratifractor salsuginis DSM 16511] gi|319419686|gb|ADV46796.1| translocation protein TolB [Nitratifractor salsuginis DSM 16511] Length = 414 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 154/394 (39%), Gaps = 22/394 (5%) Query: 31 SIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 ++ A +K+ N + +++ LG K E+ + DL+ + + Sbjct: 15 AVDATLKIEKNVDQRAKIAV-IDSSDPGMPLGRKSYEIFTADLKITGHYRP-DGLYHDGS 72 Query: 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF-SSPA 149 P P + + L+ R+ + G + ++ ++ D + +K+ S A Sbjct: 73 FNGPILNPDLRA-----MEYLLKYRISESGNG-VSLDVKVLKGGDSSLVFERKYSIGSQA 126 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 + + H D+ ++ D+ +R +V + +G ++ + + D I+ + Sbjct: 127 RYPFLIHRAVTDLNAAMGFTPVDWLNR--YVLFARYTGRRESEVVLADYTFTYIKPIIRG 184 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P + +Q+ Y T + +Y +D + RI + + M++ S +G Sbjct: 185 --GLNIFPVWGDAKQRTIYYTDYSGKLPTLYRLDLTTGQ-RTRILDSQGMLVCSDVSRDG 241 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 KR L+++ DIY ++ + +LT I++ Y+ +VF S+R G ++ Sbjct: 242 KRLLLTMAPSGQPDIYEYNVATGEKRQLTTYSGIDVGGKYADKERSMVFVSNRLGYANIF 301 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERL 385 G ++ + + + + ++ G+ F + + DG R Sbjct: 302 KKPLAGGPITQLVFHGSNNDSCDAF---DNKVVYSSKEKSSFGKAFNLYLTTTDGDYTRP 358 Query: 386 LVEDSNLQAPTWSPSGRSLIF-SRKKDGDTGSKL 418 L Q P +S G ++++ R + G++ + Sbjct: 359 LTSGGINQFPRFSNDGNTVLYIKRSEAGNSIGYI 392 >gi|284925405|gb|ADC27757.1| translocation protein TolB [Campylobacter jejuni subsp. jejuni IA3902] Length = 402 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 158/416 (37%), Gaps = 35/416 (8%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MK + + LV +G + + V + + + +S + L ++ D Sbjct: 1 MKKIVAIFLVFLGSLWAE--DPVIDVVNSGVVLPKIIVKDNSNLSDENLKKSFYNIIVND 58 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S F ++ +T + N G + + ++ G D+ + L Sbjct: 59 LKVSSNFEVV------ANVTETSNYIFEYTLNKNGNTLSLNVKIKAGGSDKSEQTYTL-- 110 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + +AH ++ D+ + ++ + S K+ Sbjct: 111 -------------NGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSS--KKSQ 155 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 156 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 213 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A + +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 214 LSSG-GMVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 272 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 273 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 329 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 330 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 385 >gi|329848102|ref|ZP_08263130.1| WD40-like Beta Propeller Repeat family protein [Asticcacaulis biprosthecum C19] gi|328843165|gb|EGF92734.1| WD40-like Beta Propeller Repeat family protein [Asticcacaulis biprosthecum C19] Length = 501 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 15/225 (6%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G ++ T + +++ + FSP+ +++ + + D + P+ + Sbjct: 275 GTPVKLETGALNKMNNDHGFSPDGKEIVVSDQTEPDNQSRIHILPAAGGTPRLVTPNGPS 334 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +S +GK Q+ D+YS+ + RLT T ++ A YS D I F Sbjct: 335 YWH-GWSPDGKTLAYIAQRGGDYDVYSIPVGGGPETRLTTTPGLDDGAEYSADGQWIYFN 393 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------KFSGE 369 S R G +L+ M+S+GS ++++ ++ + P SP G IAF + + Sbjct: 394 SVRSGNMKLWRMKSDGSGAEQLTFGDDSRDWFPHPSPDGKWIAFIAFGTDVAVGDHPANK 453 Query: 370 KFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKK 410 + +M G + +L + P+WSP + + F + Sbjct: 454 DVELRLMPAAGGEAVVLAWLFGGQGTINVPSWSPDSKKIAFVSYR 498 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 19/215 (8%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-- 303 ++ + + I AP +S +G L + S + +L Sbjct: 229 SNKNRTIVWHTTGHIEAPNWSPDGSYLLYNSAGHLFTIPVSGPVNGGTPVKLETGALNKM 288 Query: 304 NISASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 N +SPD +IV SD+ + + +++++ + G + ++ + + + WSP G Sbjct: 289 NNDHGFSPDGKEIV-VSDQTEPDNQSRIHILPAAGGTPRLVTPNGPSYWHG--WSPDGKT 345 Query: 361 IAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 +A+ G + + + G E RL +S G+ + F+ + G+ KL+ Sbjct: 346 LAYIAQRGGDYDVYSIPVGGGPETRLTTTPGLDDGAEYSADGQWIYFNSVRSGNM--KLW 403 Query: 420 SIDLNGRNETLIN--------TPAYASDPQWVGFM 446 + +G + P + D +W+ F+ Sbjct: 404 RMKSDGSGAEQLTFGDDSRDWFPHPSPDGKWIAFI 438 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 17/219 (7%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + + G V ++ + ++ G R +TP + + +SP+ + Sbjct: 287 KMNNDHGFSPDGKEIVVSDQTEPDNQSRIHILPAAGGTPRLVTP--NGPSYWHGWSPDGK 344 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +AY D VY + R+ + +S++G+ + + M + Sbjct: 345 TLAYIAQRGGD-YDVYSIPVG-GGPETRLTTTPGLDDGAEYSADGQWIYFNSVRSGNMKL 402 Query: 285 YSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESD----------REGKEQLYVMQS 333 + + + E+LT + SPD I F + +L +M + Sbjct: 403 WRMKSDGSGAEQLTFGDDSRDWFPHPSPDGKWIAFIAFGTDVAVGDHPANKDVELRLMPA 462 Query: 334 NGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEK 370 G + ++ + + P WSP IAF + ++ Sbjct: 463 AGGEAVVLAWLFGGQGTINVPSWSPDSKKIAFVSYRPKE 501 >gi|315453875|ref|YP_004074145.1| putative protein tolB [Helicobacter felis ATCC 49179] gi|315132927|emb|CBY83555.1| putative protein tolB precursor [Helicobacter felis ATCC 49179] Length = 414 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 74/416 (17%), Positives = 155/416 (37%), Gaps = 30/416 (7%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELG--GKVSEVVSKDLQR 75 L ++G S A + + N + +++ + K+ ++ DL+ Sbjct: 3 FLWFFILGWQMLWSADATLDIIK---NIEKLPSVAVRYLKNSQEPYLAKIYAMLLTDLKI 59 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S+ I + ++I + + A +LV+ RV K G +V R +DV Sbjct: 60 SNHVKTIELGAQAEQI-------NYSALQAKQASLLVSLRVDKLG----QVNVRFYDVAH 108 Query: 136 RKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + + K + + + IAH ++ DI ++ + +R + ++ + G+ K S+ Sbjct: 109 QSVLGIKDYTFNQKPLYPFIAHRVAIDINDALKAPPIAWMARFVIFAKYIKPGVTKISIA 168 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 D + + + + P+++ +Q Y T + D + I Sbjct: 169 --DYTLTYKQDIIDNG-MLNVFPKWANAEQSAFYYTQYLHHPTII--KYNLRDGTSEVIT 223 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 M S NG++ L+++ + DIY D + RLT I++ ++ + Sbjct: 224 QSEGMATVSSVSRNGRKLLLTLAPNGQSDIYLYDTAKKNSIRLTKYQGIDVLGNFVGNEK 283 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---- 370 +VF SDR G +Y + I Q S + + G+ I + Sbjct: 284 GMVFVSDRAGYPNVYFKKLQPDAP--IEQVVFYSKNNDSVAASGNNIVYVSRENRDENGQ 341 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + + R L Q P +S G+++++ +K + + +D N Sbjct: 342 ISFNLHFITLKSDYVRRLTASGINQMPRFSQDGKAVMYLKKASQQSALGVILLDYN 397 >gi|91793532|ref|YP_563183.1| WD-40-like beta propeller repeat-containing protein [Shewanella denitrificans OS217] gi|91715534|gb|ABE55460.1| WD40-like beta Propeller [Shewanella denitrificans OS217] Length = 292 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 7/224 (3%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA--TY 231 + + + V + G S+ M+ DG N + LT +++ P +SP+ +K+ +A Sbjct: 71 DGKKIAVRQYHDDGKT-WSIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFAREYK 129 Query: 232 DDEDILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 D E + + + D + + +I + + P F+ +G+ S D+ +I ++ Sbjct: 130 DPEGVFQAEIWLMNADGSKQTQIESLKGSN--PHFTPDGRIVFSSEFNDKKSEISIANID 187 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + +LT+ SPD I F S R+G +++YVM S+GS+QKR++ + F Sbjct: 188 GSKVIQLTDNEAEEWHPEVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKRLTFNNVGDSF 247 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 P WSP I FT F+ + I +M KDGS R ++ + Sbjct: 248 -PSWSPDSSEILFTHFADTGWDIYIMNKDGSSSRKILSGRDAMF 290 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 118/272 (43%), Gaps = 17/272 (6%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYD 232 +S +L S + + + + DR+G + + + +SP+ +K+A +D Sbjct: 26 DSPVLDSSHIIAVSGAGSKIYLTDREGQSSINIPNVTGDYV---TWSPDGKKIAVRQYHD 82 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-----AMDIYSV 287 D ++ M++ + P +S +GK+ + + + + +I+ + Sbjct: 83 DGKTWSIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFAREYKDPEGVFQAEIWLM 142 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQKRISQDKE 346 + + ++ + N ++PD +IVF S+ + K ++ + +GS +++ D E Sbjct: 143 NADGSKQTQIESLKGSN--PHFTPDG-RIVFSSEFNDKKSEISIANIDGSKVIQLT-DNE 198 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 A + P SP G IAF I VM DGS ++ L + P+WSP ++ Sbjct: 199 AEEWHPEVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKRLTFNNVGDSFPSWSPDSSEIL 258 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 F+ DTG +Y ++ +G + I + A Sbjct: 259 FT--HFADTGWDIYIMNKDGSSSRKILSGRDA 288 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 21/233 (9%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + + + I P G++ +S +GK+ + D+ Sbjct: 31 DSSHIIAVSGAGSKIYLTDREGQSSINIPNVTGDY------VTWSPDGKKIAVRQYHDDG 84 Query: 282 --MDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFES---DREGKEQ--LYVMQS 333 I++++ +RLT+ + ++SPD +IVF D EG Q +++M + Sbjct: 85 KTWSIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFAREYKDPEGVFQAEIWLMNA 144 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNL 392 +GS Q +I K ++ P ++P G ++ ++F+ +K I + DGS+ L ++ + Sbjct: 145 DGSKQTQIESLKGSN---PHFTPDGRIVFSSEFNDKKSEISIANIDGSKVIQLTDNEAEE 201 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVG 444 P SP G+ + F K+DG ++Y ++ +G N+ + S P W Sbjct: 202 WHPEVSPDGKHIAFMSKRDG--NQEIYVMNSDGSNQKRLTFNNVGDSFPSWSP 252 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 103/225 (45%), Gaps = 19/225 (8%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEKGDFNS---------RILFVS-E 182 D K+I +++ +W HT++ D ++ +T EK ++S +I+F Sbjct: 71 DGKKIAVRQYHDDGKTW--SIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIVFAREY 128 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 G+ + + +M+ DG+ + + P F+P+ ++ +++ ++ + + Sbjct: 129 KDPEGVFQAEIWLMNADGSKQTQIESLKGS---NPHFTPDG-RIVFSSEFNDKKSEISIA 184 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + + + + P S +GK ++D +IY ++ + +RLT Sbjct: 185 NIDGSKVIQ-LTDNEAEEWHPEVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKRLTFNNV 243 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + S+SPDSS+I+F + +Y+M +GS ++I ++A Sbjct: 244 GDSFPSWSPDSSEILFTHFADTGWDIYIMNKDGSSSRKILSGRDA 288 >gi|109947174|ref|YP_664402.1| translocation protein TolB [Helicobacter acinonychis str. Sheeba] gi|109714395|emb|CAJ99403.1| tolB protein [Helicobacter acinonychis str. Sheeba] Length = 417 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 67/414 (16%), Positives = 153/414 (36%), Gaps = 25/414 (6%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDV 78 L L L+G + +I + + + + + K+ EV+ DL+ S Sbjct: 4 LWLFLMGSVWLFAIDKTLDIVKTIQKLPKIEV-RYSIDNDANYALKLHEVLINDLKTSQH 62 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F++ S + D + Q++ V E +++ RL+DV Sbjct: 63 FDV--------SENKEQSAINYADLKNKKFQLVALVSVAVENGNKIS-RLRLYDVNTSTL 113 Query: 139 IIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + A AH ++ + + + R + S+ + SG+ +L Sbjct: 114 TKTFDYPILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVFSKYISSGVTSIALADYT 173 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 + +++ P+++ +Q Y T E + + + + I + + Sbjct: 174 M---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERKPMILKYNIQKGTH-QSIASSQ 229 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 M + SS+G + L+S+ D+Y D+ + ++T I++S + D + Sbjct: 230 GMAVVSSVSSDGSKILMSLAPKGQPDVYLYDVHKKTSTKITRYPGIDVSGVFLEDDKSMA 289 Query: 318 FESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EK 370 F SDR G +Y+ + +++ + +++ + D I + Sbjct: 290 FVSDRSGYPNIYMKKLGLNESAEQLVYEGKSNESIDAY---KDGIVYVSRENLNEFGKTV 346 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + Q P +S G+++++ +K + L +D N Sbjct: 347 FNLNLITLNSKYIRRLTVNGVNQMPRFSVDGKNIMYIKKTPQEYAMGLILLDYN 400 >gi|93005276|ref|YP_579713.1| WD-40-like beta propeller repeat-containing protein [Psychrobacter cryohalolentis K5] gi|92392954|gb|ABE74229.1| WD40-like beta Propeller [Psychrobacter cryohalolentis K5] Length = 340 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 107/289 (37%), Gaps = 22/289 (7%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 D I +V E V ++L + DG+ ++ + + ++ P +S + Q +AY Sbjct: 59 PAIDRQGYIAYVEEQGVGTAKISTLYRIRPDGSGLQLI-DQLNGYIYAPTWSADGQMLAY 117 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + ++Y+ D + + N L+P FS +GK+ L S DIY + Sbjct: 118 SKQAARQHPKIYIYDVKSSSH-NLVVNVEGSNLSPSFSPDGKKLLYSSTVGGNADIYEMQ 176 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKE 346 L +T++LT + SY+ D V+ SD R G+ +Y + I+ Sbjct: 177 LSDGSTKQLTTLPSTEVQPSYASDGQSFVYTSDKVRAGRPSIYRYSFATGNAALITTGGY 236 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 A+ P S +A+ VM Q L E + SPSG+ ++ Sbjct: 237 AA--SPQLSLDSQRLAYLNGR----KAAVMMLTTGQVINLAETGLDEPARLSPSGQYALY 290 Query: 407 SRKKDG----------DTGSKLYSIDLNGRNETLIN--TPAYASDPQWV 443 ++ +G L L G I+ T P W Sbjct: 291 PTRQSNLGGQVGGQSSQSGGSLVIHSLAGNTSYAISSKTGGVVRSPIWG 339 >gi|299140155|ref|ZP_07033323.1| transcriptional regulator domain protein [Acidobacterium sp. MP5ACTX8] gi|298597884|gb|EFI54054.1| transcriptional regulator domain protein [Acidobacterium sp. MP5ACTX8] Length = 752 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 18/280 (6%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 ++ +GD+ I FV S + VM G R L + I +S + Sbjct: 360 VNAVFSPQGDW---IAFVRARGPSSA---EIHVMPAHGGPDRVLPFNIHSINGL-TWSAD 412 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEA 281 Q + A+ + ++ + P + + P S G R + ++ + Sbjct: 413 GQSLLVASSRALSVGNLWKLSLN-GDPPVALSTLPAHTEDPVVSPKGHRLAYIDLLRNGS 471 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 + S D E+L + FI+ + YSPD S+I FESDR G +++V +++G+ KR+ Sbjct: 472 LWRMSTDGHGKQ-EQLIASRFIDSAPDYSPDGSEIAFESDRTGASEIWVCKNDGTQCKRL 530 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-----PT 396 + + P WSP G L+AF + AI V+ G LLV +A P Sbjct: 531 TNIFGPNTSSPRWSPDGKLLAFNSGFHGRSAIFVVNASGGIP-LLVTTGAFEAADNLIPN 589 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 WS G+SL FS + G +++ +NG E I Sbjct: 590 WSRDGQSLYFSSNRTGRF--EVWKTKVNGDEERQITQHGG 627 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 100/251 (39%), Gaps = 11/251 (4%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 SL M DG + + I P +SP+ ++A+ + D +++ + Sbjct: 468 RNGSLWRMSTDGHGKQEQLIASRFIDSAPDYSPDGSEIAFES-DRTGASEIWVCKNDGTQ 526 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL---FINI 305 + F +PR+S +GK + I+ V+ +T N+ Sbjct: 527 CKRLTNIFGPNTSSPRWSPDGKLLAFNSGFHGRSAIFVVNASGGIPLLVTTGAFEAADNL 586 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++S D + F S+R G+ +++ + NG ++++I+Q + + S G + + Sbjct: 587 IPNWSRDGQSLYFSSNRTGRFEVWKTKVNGDEERQITQHGGYNGME---SADGKSLYYI- 642 Query: 366 FSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK-DGDTGSKLYSIDL 423 +K I + +G + + + + W G L + +KK +G + ++ +DL Sbjct: 643 QDTDKTTIWRIPLNGGEAQPVAGPLGSGMWGYWMVVGEDLYYLQKKMEGTALADVFRVDL 702 Query: 424 -NGRNETLINT 433 G L T Sbjct: 703 KTGSKTKLGQT 713 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 55/313 (17%), Positives = 118/313 (37%), Gaps = 30/313 (9%) Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS------LCVMDRDGANIRYLT 207 + H SD + +T G ++ + + ++ + + + D + L+ Sbjct: 196 LVHAASDS--RPLTSVPGVYSWPTFSPNGNSLAYSWHSDAGQDQAIYMQKVDSDDREKLS 253 Query: 208 PSRDQILFEPRFSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---- 262 F P +SP +++AY +D L + + + + + ++ A Sbjct: 254 DGGKS--FSPAWSPRGEEIAYLRATEDPKWLEIEVAKVQRPHTARHLAFINNLKSAFHDV 311 Query: 263 PR--FSSNGKRALISV--QKDEAMDIYSVDLQSNATERLTNTLF--INISASYSPDSSQI 316 P +S +G + + DE+ + V L++ + LT+ ++++A +SP I Sbjct: 312 PTLNWSPDGSWLVTTEKEDADESSHLELVSLENGEKQALTHPPALSVDVNAVFSPQGDWI 371 Query: 317 VFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTKFSGEKFAIG 374 F R +++VM ++G R+ S WS G L+ + + + Sbjct: 372 AFVRARGPSSAEIHVMPAHGG-PDRVLPFNIHSINGLTWSADGQSLLVASSRALSVGNLW 430 Query: 375 VMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN--GRNETLI 431 + +G L ++ + P SP G L + D L+ + + G+ E LI Sbjct: 431 KLSLNGDPPVALSTLPAHTEDPVVSPKGHRLAYI---DLLRNGSLWRMSTDGHGKQEQLI 487 Query: 432 NTPAYASDPQWVG 444 + S P + Sbjct: 488 ASRFIDSAPDYSP 500 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 81/296 (27%), Gaps = 63/296 (21%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 D+ + + IA D + S I F S+ + Sbjct: 464 IDLLRNGSLWRMSTDGHGKQEQLIASRFIDSA-----PDYSPDGSEIAFESDRTGA---- 514 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-YDDEDILRVYLMDTRIDRA 249 + + V DG + LT PR+SP+ + +A+ + + + V I Sbjct: 515 SEIWVCKNDGTQCKRLTNIFGPNTSSPRWSPDGKLLAFNSGFHGRSAIFVVNASGGIPLL 574 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + L P +S +G+ S + +++ + + ++T N Sbjct: 575 VTTGAFEAADNLIPNWSRDGQSLYFSSNRTGRFEVWKTKVNGDEERQITQHGGYNGME-- 632 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--------------------------- 342 S D + + D + K ++ + NG + + ++ Sbjct: 633 SADGKSLYYIQDTD-KTTIWRIPLNGGEAQPVAGPLGSGMWGYWMVVGEDLYYLQKKMEG 691 Query: 343 -----------------------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 SP I + + ++ I + Sbjct: 692 TALADVFRVDLKTGSKTKLGQTQFGVNEYDRGLAVSPDERWILYAERDVDRSNIML 747 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 87/196 (44%), Gaps = 24/196 (12%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREGKEQLY 329 ++ V V S + LT+ + ++SP+ + + + SD + +Y Sbjct: 182 VVMRVSYSRHHQAGLVHAAS-DSRPLTSVPGVYSWPTFSPNGNSLAYSWHSDAGQDQAIY 240 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----KFAIGVMKKDGSQERL 385 + + + D++++S ++ F P WSP+G+ IA+ + + + + + +++ + L Sbjct: 241 MQKVDSDDREKLSDGGKS--FSPAWSPRGEEIAYLRATEDPKWLEIEVAKVQRPHTARHL 298 Query: 386 LV----EDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA--- 435 + + PT WSP G L+ + K+D D S L + L NG + L + PA Sbjct: 299 AFINNLKSAFHDVPTLNWSPDGSWLVTTEKEDADESSHLELVSLENGEKQALTHPPALSV 358 Query: 436 -----YASDPQWVGFM 446 ++ W+ F+ Sbjct: 359 DVNAVFSPQGDWIAFV 374 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 1/109 (0%) Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVEDSNLQAP 395 R++ F V S +I + S + G++ L P Sbjct: 157 PVSRLTTRASWGIFVAVLSAFVVIIVVMRVSYSRHHQAGLVHAASDSRPLTSVPGVYSWP 216 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 T+SP+G SL +S D +Y ++ + ++ + P W Sbjct: 217 TFSPNGNSLAYSWHSDAGQDQAIYMQKVDSDDREKLSDGGKSFSPAWSP 265 >gi|33321858|gb|AAQ06664.1| antigen P49Hb65 [Helicobacter bilis] Length = 428 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 68/415 (16%), Positives = 158/415 (38%), Gaps = 21/415 (5%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVS-IAFTKFVSIDELGGKVSEVVSKDLQRS 76 + ++A K + + I D + +++ +DL+ Sbjct: 10 IFAFCAMFAMHSVGLYAEDKTIVVTRQTDNIPNIQVVSSDGADNT-MAIYKMLVQDLKTL 68 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 FN+ D+ K I + QD+ + + K+G L L++ Sbjct: 69 GHFNVYYDDTLKTDILQNNLA--LQDYKNKNMNFIAQVSQKKKG-GSLIATLSLYEYASG 125 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 K I + + IAH ++ + I D+ +R + S V SG ++++ + Sbjct: 126 KTITTEYREDETERYPFIAHAMASYLNDCIKAPNADWLNRYVVFSNYVGSG--RSNILIA 183 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D + + + + P+++ ++Q+ Y T +Y + + K I + Sbjct: 184 DYTFTYQKTII--SNGLNMFPKWADSKQEEFYYTLVT-HEATIYKYNMYSGKNEKVISS- 239 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + M + S +G + L+S+ DI+ +++S +LT I+++A ++ + Sbjct: 240 QGMAVVSDVSKHGDKLLLSLAPVGLSDIFLYEVKSKKLTQLTRYSGIDVNAHFTNNEKSF 299 Query: 317 VFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----- 370 VF SDR G +++ ++ +I + + G I ++ ++ Sbjct: 300 VFVSDRLGYPNIFMQDLMPNANVTQIVFKGRNNSTLSTF---GQYIVYSSRESDEETGLN 356 Query: 371 -FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ R L + + P +S G S++F R++ + + + +N Sbjct: 357 VFNLYLVSAHSDYVRRLSKIGTNRIPAFSHDGDSIMFLRQQKNEQAIGIIRLSIN 411 >gi|237751471|ref|ZP_04581951.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229372837|gb|EEO23228.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 428 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 68/415 (16%), Positives = 158/415 (38%), Gaps = 21/415 (5%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVS-IAFTKFVSIDELGGKVSEVVSKDLQRS 76 + ++A K + + I D + +++ +DL+ Sbjct: 10 IFAFCAMFAMHSVGLYAEDKTIVVTRQTDNIPNIQVVSSDGADNT-MAIYKMLVQDLKTL 68 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 FN+ D+ K I + QD+ + + K+G L L++ Sbjct: 69 GHFNVYYDDTLKTDILQNNLA--LQDYKNKNMNFIAQVSQKKKG-GSLIATLSLYEYASG 125 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 K I + + IAH ++ + I D+ +R + S V SG ++++ + Sbjct: 126 KTITTEYREDEIERYPFIAHAMASYLNDYIKAPNADWLNRYVVFSNYVGSG--RSNILIA 183 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D + + + + P+++ ++Q+ Y T +Y + + K I + Sbjct: 184 DYTFTYQKTII--SNGLNMFPKWADSKQEEFYYTLVT-HEATIYKYNMYSGKNEKVISS- 239 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + M + S +G + L+S+ DI+ +++S +LT I+++A ++ + Sbjct: 240 QGMAVVSDVSKHGDKLLLSLAPVGLSDIFLYEIKSKKLTQLTRYSGIDVNAHFTNNEKSF 299 Query: 317 VFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----- 370 VF SDR G +++ ++ +I + + G I ++ ++ Sbjct: 300 VFVSDRLGYPNIFMQDLMPNANVTQIVFKGRNNSTLSTF---GQYIVYSSRESDEETGLN 356 Query: 371 -FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ R L + + P +S G S++F R++ + + + +N Sbjct: 357 VFNLYLVSAHSDYVRRLSKIGTNRIPAFSHDGDSIMFLRQQKNEQAIGIIRLSIN 411 >gi|297845142|ref|XP_002890452.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata] gi|297336294|gb|EFH66711.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata] Length = 706 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 136/396 (34%), Gaps = 57/396 (14%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++ +S + P + F S + + G D VE L+D+ R + I Sbjct: 297 PLTTESVTIQRVTPPGVHAFTPATSPNNHEFIAVATRRPGSDYRHVE--LFDL-KRNEFI 353 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 +P S+ D +G+ N R + L + DG Sbjct: 354 ELTRLVAPKSYHLNPFLSPDSSRVGYHSCRGEANGRRSPLLFLENIQTTTTDLSLFRIDG 413 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + P FSP ++AY + V+++ + + M Sbjct: 414 S--------------FPSFSPGGDRIAYV-----KMPGVFVVKPDGSGQREV---YNGMA 451 Query: 261 LAPRFSSNGKRALISVQKDEAM------DIYSVDLQ----SNATERLTNTLFINISASYS 310 + + + S D+ S+++ S++ RLT N S Sbjct: 452 FSTAWDPVRPGVVYSSSGPTFATERTEVDVISIEVDAADKSSSVRRLTTNGKNNAFPWPS 511 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS- 367 PD +IVF S R G + LY+M + + + + E ++ D WSP G+ IAF Sbjct: 512 PDGKRIVFRSGRTGHKNLYIMDAEKGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRE 571 Query: 368 ---GEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKDG--------- 412 F + ++ +G+ R L+ P +SP +SL+F+ G Sbjct: 572 SPGSGSFELFLIHPNGTGLRKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNP 631 Query: 413 ---DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 ++++ L+G N + +Y P W Sbjct: 632 HHYQPYGDIFTVKLDGSNLRRLTHNSYEDGTPAWAP 667 Score = 47.3 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 77/261 (29%), Gaps = 42/261 (16%) Query: 220 SPNQQKVAYATYDDEDILR------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 S + + + Y + + VY + + +R+ +P S +G Sbjct: 166 SLSGEFLVYVSTHENSGEPRTSWTAVYSTELKTG-LTRRLTPSGVADFSPAVSPSGNLTA 224 Query: 274 ISVQKDEA---------MDIYSVDL-QSNATERLTNTLFINISASYSPDSSQIVF--ESD 321 ++ + DIY ++ + D + + F S+ Sbjct: 225 VASYGERGWTGEVEELSTDIYVFSTRDGTHRVKVVEHGGW---PCWV-DETTLYFHRRSE 280 Query: 322 REGKEQLY--VMQSNGS------DQKRISQDKEASYFDPVWSPQG-DLIAFTKFSGEK-- 370 +G +Y ++ NG +R++ + F P SP + IA Sbjct: 281 EDGWISVYRAILPENGPLTTESVTIQRVTPPGVHA-FTPATSPNNHEFIAVATRRPGSDY 339 Query: 371 FAIGVMKKDGSQ----ERLLVEDSNLQAPTWSPSGRSLIFSRKKD---GDTGSKLYSIDL 423 + + ++ RL+ S P SP + + + G L+ ++ Sbjct: 340 RHVELFDLKRNEFIELTRLVAPKSYHLNPFLSPDSSRVGYHSCRGEANGRRSPLLFLENI 399 Query: 424 NGRNETLINTPAYASDPQWVG 444 L S P + Sbjct: 400 QTTTTDLSLFRIDGSFPSFSP 420 Score = 40.4 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 34/189 (17%) Query: 263 PRFSSNGKRALISVQ-------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P S G+ + + +YS +L++ T RLT + + S + SP + Sbjct: 165 PSLS--GEFLVYVSTHENSGEPRTSWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNL 222 Query: 316 IVFES--DREGKEQ-------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S +R + +YV + + + P W + F + Sbjct: 223 TAVASYGERGWTGEVEELSTDIYVFSTRDGTHRVKVVEHGG---WPCWV-DETTLYFHRR 278 Query: 367 SGEKFAIGVMKK----DG-------SQERLLVEDSNLQAPTWSPSG-RSLIFSRKKDGDT 414 S E I V + +G + +R+ + P SP+ + + ++ G Sbjct: 279 SEEDGWISVYRAILPENGPLTTESVTIQRVTPPGVHAFTPATSPNNHEFIAVATRRPGSD 338 Query: 415 GSKLYSIDL 423 + DL Sbjct: 339 YRHVELFDL 347 >gi|237751978|ref|ZP_04582458.1| translocation protein TolB [Helicobacter winghamensis ATCC BAA-430] gi|229376545|gb|EEO26636.1| translocation protein TolB [Helicobacter winghamensis ATCC BAA-430] Length = 418 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 65/420 (15%), Positives = 173/420 (41%), Gaps = 28/420 (6%) Query: 23 LIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID----ELGGKVSEVVSKDLQRSDV 78 L G + A ++V N + + V D E ++ +++ DL+ + Sbjct: 3 LFGLACANGVDATLEVVKKFGN---LPNILVQNVGSDYFEREFSQRIFKMLIADLKVTGH 59 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F + + +++ + + + F ++ ++ + K + L+DV Sbjct: 60 FTVQEE----KEVISSEMLVNFDEYRKNKIDLVARIKAEKSESGVI-ARLHLYDVNSGLV 114 Query: 139 IIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 + K++ + ++ +AH ++ DI I D+ R++ ++ G ++ + + D Sbjct: 115 ALSKEYKNMQQETYPFLAHKMAIDINAYIKAPSVDWMERMVILAYYTKPG--ESDIIMSD 172 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 + + + P+++ Q Y T + ++ D + K++ + Sbjct: 173 YTLTYKKKVISG--GLNIFPKWANAAQNAFYYTKYLDKP-TLFKFDLGTGQN-KKMFDSS 228 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 M++A S++ + L+++ +E DI+ D+ + A +RLT I++S ++ + +++ Sbjct: 229 GMLVASDVSNDENKILVTMAPNEQPDIFMYDITNGALKRLTKYSGIDVSGNFIDNEERVM 288 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------F 371 F SDR G ++ + ++G + Q + + G+ I ++ + F Sbjct: 289 FISDRLGYPNVFAIPASGEVSGNVEQMVFHGRNNNAANANGNYIVYSSRESNEEFDRNTF 348 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + ++ R L + Q P +S G ++++ + + + + ++ N+TL+ Sbjct: 349 NLYLVSTKSDFIRRLSANGVNQLPRFSKDGETIMYIKHEANQSALGIIRLN---YNKTLL 405 >gi|226225576|ref|YP_002759682.1| hypothetical protein GAU_0170 [Gemmatimonas aurantiaca T-27] gi|226088767|dbj|BAH37212.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 380 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 116/290 (40%), Gaps = 50/290 (17%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ++ + G + + +S G + VM DG + ++ F P Sbjct: 83 EAYFSQDGQWLT-----FQSTRDGRACDQQYVMRVDGTGLTKVSVGGKTTCGW--FLPGG 135 Query: 224 QKVAYATYD--------DEDILRVYLMDT---------RIDRAPKRIGNFRSMILAPRFS 266 K+ +A+ D + Y+ R + R+ N+ S Sbjct: 136 NKLFFASTHAADSACPPRPDPSKGYVWGIDKYDIYTADRDGQNLTRLTNYGVYTAEGVLS 195 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----- 321 +GKR + + KD +DIY++++ +RLT T + +SPD ++IV+ + Sbjct: 196 PDGKRIVFTSLKDGDLDIYTMNVDGTDVKRLTTTPGYDGGPWWSPDGTKIVYRAWHYDND 255 Query: 322 ---------------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 R K +L+VM ++GSDQ++I++ A+ F P W+P G + F+ Sbjct: 256 TDLKAYQELLKQNMIRPNKMELFVMNADGSDQRQITKLGGAN-FGPSWTPDGQRVIFSSN 314 Query: 367 ----SGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 F + ++ DG+ E++ P +SP G LI++ + Sbjct: 315 HKNPRSRNFDLYIVGLDGNNLEQVTTNGEFDGFPMFSPDGTKLIWASNRG 364 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 98/288 (34%), Gaps = 49/288 (17%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLMDTRIDRAPKRIGNFRSM 259 NIR +T + FS + Q + + + D + Y+M K + Sbjct: 70 TNIRQITNGGENAEAY--FSQDGQWLTFQSTRDGRACDQQYVMRVDGTGLTKV--SVGGK 125 Query: 260 ILAPRFSSNGKRALISVQ-------------------KDEAMDIYSVDLQSNATERLTNT 300 F G + + + DIY+ D RLTN Sbjct: 126 TTCGWFLPGGNKLFFASTHAADSACPPRPDPSKGYVWGIDKYDIYTADRDGQNLTRLTNY 185 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SPD +IVF S ++G +Y M +G+D KR++ P WSP G Sbjct: 186 GVYTAEGVLSPDGKRIVFTSLKDGDLDIYTMNVDGTDVKRLTT-TPGYDGGPWWSPDGTK 244 Query: 361 IAFTKF--------------------SGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSP 399 I + + K + VM DGS +R + + P+W+P Sbjct: 245 IVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELFVMNADGSDQRQITKLGGANFGPSWTP 304 Query: 400 SGRSLIFSRKKDGD--TGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 G+ +IFS LY + L+G N + T + P + Sbjct: 305 DGQRVIFSSNHKNPRSRNFDLYIVGLDGNNLEQVTTNGEFDGFPMFSP 352 Score = 44.2 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 4/71 (5%) Query: 369 EKFAIGVMKKDG----SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I V G + R + +S G+ L F +DG + Y + ++ Sbjct: 54 GALNIAVTADSGEAHLTNIRQITNGGENAEAYFSQDGQWLTFQSTRDGRACDQQYVMRVD 113 Query: 425 GRNETLINTPA 435 G T ++ Sbjct: 114 GTGLTKVSVGG 124 >gi|256421833|ref|YP_003122486.1| hypothetical protein Cpin_2806 [Chitinophaga pinensis DSM 2588] gi|256036741|gb|ACU60285.1| WD40 domain protein beta Propeller [Chitinophaga pinensis DSM 2588] Length = 509 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 110/286 (38%), Gaps = 22/286 (7%) Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGD-FNSRILFVSESVVSGIIKNSLCVMDRDG 200 K++ S IA S +YQ+ + +N + + + + L Sbjct: 220 KQYIGSQLELMDIATQHSIIVYQTPGSIQAPNWNQDGQSLIYNKEGKLYQFDLRTRTPSP 279 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N + + + S + + +A ++ + E+ V + P RI N Sbjct: 280 INTGVAKQNNNDHVL----SFDGKMLAISSGEGENGASVGYVVPHTGGDPVRI-NKVGPS 334 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +S +GK + + Q++ DIY V + RLT ++ Y+PD I F S Sbjct: 335 YMHGWSPDGKYLVFTGQRNNDFDIYRVPAKGGEEVRLTTAPGLDDGPEYTPDGKYIYFNS 394 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-------- 372 R G Q++ M +GS+Q +I+ D ++F P SP G I F F E+ Sbjct: 395 VRSGMMQIWRMAPDGSNQTQITNDDFHNWF-PHISPDGKWIVFLSFLKEEVDASDHPFYK 453 Query: 373 ---IGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKD 411 + +M G +++ + P+WSP R + F + Sbjct: 454 HVYLRLMPATGGPAKVIAYLYGGQGTINTPSWSPDSRRIAFISNTN 499 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 20/202 (9%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--INISASYSPDSS 314 I AP ++ +G+ + ++ +Y DL++ + + N S D Sbjct: 244 PGSIQAPNWNQDGQSLIY----NKEGKLYQFDLRTRTPSPINTGVAKQNNNDHVLSFDGK 299 Query: 315 QIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + S G YV+ G D RI +K + WSP G + FT F Sbjct: 300 MLAISSGEGENGASVGYVVPHTGGDPVRI--NKVGPSYMHGWSPDGKYLVFTGQRNNDFD 357 Query: 373 IGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I + G +E RL P ++P G+ + F+ + G +++ + +G N+T I Sbjct: 358 IYRVPAKGGEEVRLTTAPGLDDGPEYTPDGKYIYFNSVRSGMM--QIWRMAPDGSNQTQI 415 Query: 432 NT-------PAYASDPQWVGFM 446 P + D +W+ F+ Sbjct: 416 TNDDFHNWFPHISPDGKWIVFL 437 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 18/217 (8%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 F+ ++L +S S + V+ G + + ++ + +SP+ + + + Sbjct: 296 FDGKMLAIS-SGEGENGASVGYVVPHTGGDPVRI--NKVGPSYMHGWSPDGKYLVFTGQR 352 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + D +Y + + R+ + P ++ +GK + + M I+ + + Sbjct: 353 NND-FDIYRVPAKGGEEV-RLTTAPGLDDGPEYTPDGKYIYFNSVRSGMMQIWRMAPDGS 410 Query: 293 ATERLTNTLFINISASYSPDSSQIVFES------DREGKE-----QLYVMQSNGSDQKRI 341 ++TN F N SPD IVF S D L +M + G K I Sbjct: 411 NQTQITNDDFHNWFPHISPDGKWIVFLSFLKEEVDASDHPFYKHVYLRLMPATGGPAKVI 470 Query: 342 SQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + + + P WSP IAF + F + M Sbjct: 471 AYLYGGQGTINTPSWSPDSRRIAFISNTNLLFPVFPM 507 >gi|213027106|ref|ZP_03341553.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 170 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 4/173 (2%) Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y M N Sbjct: 1 ALSKTGSLNLYVMDLASGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNIN 60 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G +RI+ + + D S G + + + I ++L + Sbjct: 61 GGAAQRITWEGSQNQ-DADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDET 119 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 P+ +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 120 PSLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL 170 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 L +Y+MD + ++I + RS P + + + + + +Y +++ A Sbjct: 6 GSLNLYVMDLASGQ-IRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAA 64 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 +R+T N A S D +V S G++ + + +S P Sbjct: 65 QRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTF--LDETPSL 122 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 +P G ++ ++ G + ++ DG + RL D +++P WSP Sbjct: 123 APNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 168 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 48/169 (28%), Gaps = 46/169 (27%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S +L VMD IR +T R EP + P+ Q +A+ + +VY M+ Sbjct: 3 SKTGSLNLYVMDLASGQIRQITDGRSN-NTEPTWFPDSQTLAFTSDQAGRP-QVYKMNIN 60 Query: 246 IDRAPKRIGNFRSMIL-------------------------------------------A 262 A +RI S Sbjct: 61 -GGAAQRITWEGSQNQDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDET 119 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 P + NG + S + + V RL T S ++SP Sbjct: 120 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSP 168 >gi|154173809|ref|YP_001408804.1| translocation protein TolB [Campylobacter curvus 525.92] gi|112803726|gb|EAU01070.1| protein TolB [Campylobacter curvus 525.92] Length = 421 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 68/415 (16%), Positives = 153/415 (36%), Gaps = 23/415 (5%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSKDLQR 75 + L L + A + V N P IA V K +++ DL+ Sbjct: 4 IFLFLCVALGLYAADATISV-INQGIALP-KIALQDATTAVGDANFKDKFFKIMLGDLKV 61 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F +I + + + + G +++ + L ++ +L + K Sbjct: 62 SSDFEVIE----DHVPSTYEGTAQTNTMSDKGVELIFRYALEGSANSPLTLKVKLINAKT 117 Query: 136 RKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 K + A + +AH ++ + + + F+ S + ++S+ Sbjct: 118 ATTKYEKVYTMPDGAKYPFLAHKSIVELTNELNLPPVGWMEK--FIIFSKYTSARQSSIV 175 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V D + + + P++ Q Y T + ++ D K I Sbjct: 176 VADYTLTYQKTIVSG--GLNIFPKWGGADQTKFYYTSYVNNKPTLFRYDLTSGTKTKIID 233 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + M++A S +G + L+++ + DIY ++ + ++TN I+++ ++ S Sbjct: 234 SM-GMLIASDVSKDGSKILLTMAPKDQPDIYIYNIATKGLTQITNYPGIDVNGNFVDGDS 292 Query: 315 QIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGE 369 +IVF SDR G ++ +N G +++ + + + + I ++ Sbjct: 293 RIVFVSDRLGYPNVFATSANAGGTVEQMVFHGKNNNSVSTF---ENYIVYSSRESSGDAG 349 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I ++ R L P +S G+S++F ++ G + + ++ N Sbjct: 350 TFNIYLISTQTDFIRQLTASGKNNYPRFSSDGQSVVFIKELGGQSSLGVVRLNEN 404 >gi|160889635|ref|ZP_02070638.1| hypothetical protein BACUNI_02061 [Bacteroides uniformis ATCC 8492] gi|270293977|ref|ZP_06200179.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479170|ref|ZP_07938307.1| hypothetical protein HMPREF1007_01423 [Bacteroides sp. 4_1_36] gi|156860627|gb|EDO54058.1| hypothetical protein BACUNI_02061 [Bacteroides uniformis ATCC 8492] gi|270275444|gb|EFA21304.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904658|gb|EFV26475.1| hypothetical protein HMPREF1007_01423 [Bacteroides sp. 4_1_36] Length = 369 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 85/206 (41%), Gaps = 16/206 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + Q++A + ED P+ I L +S +GK +++ Sbjct: 163 STDGQQIAISHGTKEDYKSRIYTLPITGGTPRLITPMAPSYLH-GWSPDGKELAYCAERN 221 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 D+Y++ + RLT ++ YSP I F S R G Q++ M+++GS+Q Sbjct: 222 GNYDVYTIPAEGGEETRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQT 281 Query: 340 RISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLVE 388 +++ D+ + + P SP G + F + + + +M +G + + L++ Sbjct: 282 QMTFDETRNSWFPHISPDGKSVVFITYYKGDLEPGEHLANKNVELRLMPANGGEPKTLLK 341 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKK 410 + +W+P + + F + Sbjct: 342 LFGGQGTINVNSWAPDSKRIAFVSYR 367 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 115/277 (41%), Gaps = 17/277 (6%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 F + + + + I + L ++D N R + + P ++P+ Q + Y + Sbjct: 72 IPFFATVALTATAQQKNEITSVLEILDVTNGN-RTVVKEFPYRIEAPNWTPDGQWLLYNS 130 Query: 231 YDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRALIS--VQKDEAMDIYS 286 ++Y + P+ I G ++ S++G++ IS ++D IY+ Sbjct: 131 EG-----KLYRLSPTSPAEPELINTGFAQNCNNDHVLSTDGQQIAISHGTKEDYKSRIYT 185 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + + +T + + +SPD ++ + ++R G +Y + + G ++ R++ E Sbjct: 186 LPITGGTPRLIT-PMAPSYLHGWSPDGKELAYCAERNGNYDVYTIPAEGGEETRLTT-AE 243 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 P +SP G I F + MK DGS++ + E N P SP G+S+ Sbjct: 244 GLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKSV 303 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +F GD + + +N L PA +P+ Sbjct: 304 VFITYYKGDLEPGEHLAN---KNVELRLMPANGGEPK 337 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 12/99 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI------------LRV 239 + M DG+ +T + + P SP+ + V + TY D+ LR+ Sbjct: 269 QVWRMKADGSEQTQMTFDETRNSWFPHISPDGKSVVFITYYKGDLEPGEHLANKNVELRL 328 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + + ++ + I ++ + KR + Sbjct: 329 MPANGGEPKTLLKLFGGQGTINVNSWAPDSKRIAFVSYR 367 >gi|262199569|ref|YP_003270778.1| beta-propeller repeat-containing to-pal system protein TolB [Haliangium ochraceum DSM 14365] gi|262082916|gb|ACY18885.1| beta-propeller repeat-containing to-pal system protein TolB [Haliangium ochraceum DSM 14365] Length = 362 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 19/295 (6%) Query: 164 QSITGEKGD--------FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 + +T ++GD +L ++ + + K L ++ G + L R + Sbjct: 70 RQLTKDEGDEYPAAAIPGQDALLVIAARDLGDVHKEQLQLVRLSGERVGSLHAPRGR-SR 128 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P +P+ + A D E + M + + I + ++ P S +G + Sbjct: 129 NPSVAPDGSWLV-AESDAEGFSNLVRMTPAPEAEARSIQDAKAGSFEPSISPDGTQIAFV 187 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +D ++Y D Q RLT+ + + +SPD I F S+RE + ++++++ +G Sbjct: 188 SSRDGDPELYLSDAQGQDVRRLTHFHLEDWAPQWSPDGRYIAFLSNREKRARVFLIRPDG 247 Query: 336 SDQKRISQ-DKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVM----KKDGSQERLLVED 389 S + +S D W P+G + F + K + + G L Sbjct: 248 SGTRAVSGMAATGDERDIAWHPEGGSLVFVGRMDDGKTRLWKVEIGDDAVGEPVALTDGS 307 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWV 443 S P WSP G+ L+F +++G+T LY + +G +T + P P+W+ Sbjct: 308 SRDDQPAWSPDGKYLVFVSEREGNT--DLYLMRADGSGQTRLTEAPGADWLPRWL 360 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 24/298 (8%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D E+GD I FVSE + + G + D+ P Sbjct: 31 DPAAPMSMDERGDIPGAIAFVSERGDD----KDVWLTTPTGEERQLTKDEGDE---YPAA 83 Query: 220 SPNQQK--VAYATYDDEDILRVYLMDTRIDRAPKRIGNF---RSMILAPRFSSNGKRALI 274 + Q + A D D+ + L R+ +R+G+ R P + +G + Sbjct: 84 AIPGQDALLVIAARDLGDVHKEQLQLVRLSG--ERVGSLHAPRGRSRNPSVAPDGSWLVA 141 Query: 275 SVQKDEAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + ++ + + + + S SPD +QI F S R+G +LY+ + Sbjct: 142 ESDAEGFSNLVRMTPAPEAEARSIQDAKAGSFEPSISPDGTQIAFVSSRDGDPELYLSDA 201 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDS 390 G D +R++ + P WSP G IAF ++ + +++ DGS R + Sbjct: 202 QGQDVRRLTHFHLEDW-APQWSPDGRYIAFLSNREKRARVFLIRPDGSGTRAVSGMAATG 260 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI----DLNGRNETLINTPAYASDPQWVG 444 + + W P G SL+F + D D ++L+ + D G L + + P W Sbjct: 261 DERDIAWHPEGGSLVFVGRMD-DGKTRLWKVEIGDDAVGEPVALTDGSSRDDQPAWSP 317 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 59/187 (31%) Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQD------------------------------- 344 I F S+R + +++ G +++++++D Sbjct: 48 IAFVSERGDDKDVWLTTPTG-EERQLTKDEGDEYPAAAIPGQDALLVIAARDLGDVHKEQ 106 Query: 345 ----------------KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 +P +P G + + + M E ++ Sbjct: 107 LQLVRLSGERVGSLHAPRGRSRNPSVAPDGSWLVAESDAEGFSNLVRMTPAPEAEARSIQ 166 Query: 389 DSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASD 439 D+ + P+ SP G + F +DGD +LY D G++ + P ++ D Sbjct: 167 DAKAGSFEPSISPDGTQIAFVSSRDGD--PELYLSDAQGQDVRRLTHFHLEDWAPQWSPD 224 Query: 440 PQWVGFM 446 +++ F+ Sbjct: 225 GRYIAFL 231 >gi|301311762|ref|ZP_07217687.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 20_3] gi|300830322|gb|EFK60967.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 20_3] Length = 304 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S + +++A + ED P+ I L +S +GK+ ++ Sbjct: 97 ISADGKQIAISNGTKEDGRSRIYTLPFEGGVPRLITPLGPSYLH-GWSPDGKQLAYCAER 155 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + D+Y + +RLT ++ YSP I F S R G Q++ M+++GS+Q Sbjct: 156 NGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 215 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G I F + + + +M +G + + LV Sbjct: 216 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVELRLMPAEGGEPKTLV 275 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P + F + Sbjct: 276 KLFGGQGTINVNSWAPDSKRFAFVSYR 302 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 17/271 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I + + L VMD R + ++ P ++P+ + Y + Sbjct: 13 IAVFCTHAQKKNVTSVLEVMDIT-TGQRSVVKEFPFLIEAPNWTPDGNWLVYNS-----G 66 Query: 237 LRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALIS--VQKDEAMDIYSVDLQSN 292 ++Y + P+ I + + S++GK+ IS ++D IY++ + Sbjct: 67 GKLYKLSPESPGEPQLIHSDYATRCNNDHVISADGKQIAISNGTKEDGRSRIYTLPFEGG 126 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +T L + +SPD Q+ + ++R G +YV+ + G ++KR++ E P Sbjct: 127 VPRLIT-PLGPSYLHGWSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTT-AEGLDDGP 184 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKK 410 +SP G I F + MK DGS++ + E N P SP G+ ++F Sbjct: 185 EYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYT 244 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 GD + + +N L PA +P+ Sbjct: 245 KGDLEPGQHLAN---KNVELRLMPAEGGEPK 272 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 40/135 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M DG+ +T + + P SP+ +++ + TY D+ Sbjct: 204 QVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEP------------- 250 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF----INISA 307 G+ ++ +++ + + + L IN++ Sbjct: 251 -----------------GQHLA-----NKNVELRLMPAEGGEPKTLVKLFGGQGTINVN- 287 Query: 308 SYSPDSSQIVFESDR 322 S++PDS + F S R Sbjct: 288 SWAPDSKRFAFVSYR 302 >gi|208822605|ref|ZP_03262924.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4042] gi|208738090|gb|EDZ85773.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli O157:H7 str. EC4042] Length = 169 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 4/172 (2%) Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + K ++++Y +DL S ++T+ N ++ PDS + F SD+ G+ Q+Y + NG Sbjct: 1 MSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 60 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +RI+ + + D S G + +G + I ++L + P Sbjct: 61 GAPQRITWEGSQNQ-DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP 119 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 + +P+G +I+S + GS L + +GR + L T P W ++ Sbjct: 120 SLAPNGTMVIYSSSQG--MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 169 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 4/170 (2%) Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 L +Y+MD + +++ + RS P + + + + + +Y V++ Sbjct: 1 MSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 59 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 A +R+T N A S D +V S G++ + + +S Sbjct: 60 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDE 117 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 P +P G ++ ++ G + ++ DG + RL D ++ P WSP Sbjct: 118 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 167 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 5/171 (2%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S +L VMD IR +T R EP + P+ Q +A+ + +VY ++ Sbjct: 2 SKTGSLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPDSQNLAFTSDQAGRP-QVYKVNIN 59 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 AP+RI S SS+GK ++ I DL + + L++T F++ Sbjct: 60 -GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDE 117 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + S +P+ + +++ S + L ++ ++G + R+ + P WSP Sbjct: 118 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL-PATDGQVKFPAWSP 167 >gi|256838294|ref|ZP_05543804.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739213|gb|EEU52537.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 306 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S + +++A + ED P+ I L +S +GK+ ++ Sbjct: 99 ISADGKQIAISNGTKEDGRSRIYTLPFEGGVPRLITPLGPSYLH-GWSPDGKQLAYCAER 157 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + D+Y + +RLT ++ YSP I F S R G Q++ M+++GS+Q Sbjct: 158 NGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 217 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G I F + + + +M +G + + LV Sbjct: 218 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVELRLMPAEGGEPKTLV 277 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P + F + Sbjct: 278 KLFGGQGTINVNSWAPDSKRFAFVSYR 304 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 17/271 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I + + L VMD R + ++ P ++P+ + Y + Sbjct: 15 IAVFCTHAQKKNVTSVLEVMDIT-TGQRSVVKEFPFLIEAPNWTPDGNWLVYNS-----G 68 Query: 237 LRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALIS--VQKDEAMDIYSVDLQSN 292 ++Y + P+ I + + S++GK+ IS ++D IY++ + Sbjct: 69 GKLYKLSPESPGEPQLINSDYATRCNNDHVISADGKQIAISNGTKEDGRSRIYTLPFEGG 128 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +T L + +SPD Q+ + ++R G +YV+ + G ++KR++ E P Sbjct: 129 VPRLIT-PLGPSYLHGWSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTT-AEGLDDGP 186 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKK 410 +SP G I F + MK DGS++ + E N P SP G+ ++F Sbjct: 187 EYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYT 246 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 GD + + +N L PA +P+ Sbjct: 247 KGDLEPGQHLAN---KNVELRLMPAEGGEPK 274 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 40/135 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M DG+ +T + + P SP+ +++ + TY D+ Sbjct: 206 QVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEP------------- 252 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF----INISA 307 G+ ++ +++ + + + L IN++ Sbjct: 253 -----------------GQHLA-----NKNVELRLMPAEGGEPKTLVKLFGGQGTINVN- 289 Query: 308 SYSPDSSQIVFESDR 322 S++PDS + F S R Sbjct: 290 SWAPDSKRFAFVSYR 304 >gi|150009575|ref|YP_001304318.1| Tol biopolymer transport system periplasmic protein [Parabacteroides distasonis ATCC 8503] gi|298373967|ref|ZP_06983925.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 3_1_19] gi|149937999|gb|ABR44696.1| periplasmic component of the Tol biopolymer transport system [Parabacteroides distasonis ATCC 8503] gi|298268335|gb|EFI09990.1| tol biopolymer transport system, periplasmic protein [Bacteroides sp. 3_1_19] Length = 304 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S + +++A + ED P+ I L +S +GK+ ++ Sbjct: 97 ISADGKQIAISNGTKEDGRSRIYTLPFEGGVPRLITPLGPSYLH-GWSPDGKQLAYCAER 155 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + D+Y + +RLT ++ YSP I F S R G Q++ M+++GS+Q Sbjct: 156 NGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 215 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G I F + + + +M +G + + LV Sbjct: 216 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVELRLMPAEGGEPKTLV 275 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P + F + Sbjct: 276 KLFGGQGTINVNSWAPDSKRFAFVSYR 302 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 17/271 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I + + L VMD R + ++ P ++P+ + Y + Sbjct: 13 IAVFCTHAQKKNVTSVLEVMDIT-TGQRSVVKEFPFLIEAPNWTPDGNWLVYNS-----G 66 Query: 237 LRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALIS--VQKDEAMDIYSVDLQSN 292 ++Y + P+ I + + S++GK+ IS ++D IY++ + Sbjct: 67 GKLYKLSPESPGEPQLINSDYATRCNNDHVISADGKQIAISNGTKEDGRSRIYTLPFEGG 126 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +T L + +SPD Q+ + ++R G +YV+ + G ++KR++ E P Sbjct: 127 VPRLIT-PLGPSYLHGWSPDGKQLAYCAERNGNFDVYVIPALGGEEKRLTT-AEGLDDGP 184 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKK 410 +SP G I F + MK DGS++ + E N P SP G+ ++F Sbjct: 185 EYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYT 244 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 GD + + +N L PA +P+ Sbjct: 245 KGDLEPGQHLAN---KNVELRLMPAEGGEPK 272 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 40/135 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M DG+ +T + + P SP+ +++ + TY D+ Sbjct: 204 QVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEP------------- 250 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF----INISA 307 G+ ++ +++ + + + L IN++ Sbjct: 251 -----------------GQHLA-----NKNVELRLMPAEGGEPKTLVKLFGGQGTINVN- 287 Query: 308 SYSPDSSQIVFESDR 322 S++PDS + F S R Sbjct: 288 SWAPDSKRFAFVSYR 302 >gi|255558602|ref|XP_002520326.1| conserved hypothetical protein [Ricinus communis] gi|223540545|gb|EEF42112.1| conserved hypothetical protein [Ricinus communis] Length = 708 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 74/395 (18%), Positives = 144/395 (36%), Gaps = 59/395 (14%) Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 +S DS + P + F S G + + + D +E L+D+ + + Sbjct: 294 LSTDSVIIERVTPPGVHAFTPATSPGNKKFIAVATRRPNSDYRHIE--LFDLAK-NEFVE 350 Query: 142 KKFFSSPASWRKIAHTISDDI---YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 SP + D Y G D S F+ E++ S + + SL + Sbjct: 351 LTRLVSPQTHHYNPFISPDAARVGYHRCRGASNDKKSSTQFMLENIKSPVAEISLFRI-- 408 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG+ P +SP ++A+ + VY+++ + + Sbjct: 409 DGS--------------FPSWSPGGDRIAFVEF-----PGVYVVNRDGTDRRQV---YPG 446 Query: 259 MILAPRFSSNGKRALISV------QKDEAMDIYSVDLQS-NATERLTNTLFINISASYSP 311 + + S + +DI S+++ + ++LT N + SP Sbjct: 447 NAFGTTWDPVRPGVVYSSAGPEFASESTEVDIISINVDQVGSFKKLTTNGKNNAFPAVSP 506 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGE 369 D IVF S R G + LY+M + ++ + + E + D WS G+ IAF Sbjct: 507 DGKWIVFRSGRSGYKNLYIMDAVEGEKGGLYRLTEGPWGDTMCSWSIDGEWIAFASDREN 566 Query: 370 ----KFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIFSRKKDG---------- 412 F + ++ +G+ + LV+ P +SP G+S++F+ G Sbjct: 567 PGSASFELFLIHPNGTGLKRLVKSGLGGRTNHPYFSPDGKSIVFTTDYGGISAEPISNPH 626 Query: 413 --DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 ++Y++ L+G + + ++ P W Sbjct: 627 HFQPYGEIYTVKLDGSDLKRLTHNSFEDGTPAWGP 661 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 35/233 (15%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPK-RIGNFRSMILAPRF----SSNGKRALISVQ 277 Y D R + ++ P+ +I + + F + NG + Sbjct: 114 GSSTIYLDVLSYDTARSARSRSALETPPRVQIPLLKGNNVGVSFKDKPTINGNYLVYLST 173 Query: 278 KDEAMD-------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQL 328 ++A +YS +L + T RLT + S + SP S + K ++ Sbjct: 174 HEDAGKPRASWAAVYSTELNTGLTRRLTPYGVADFSPAVSPSGVYTAVASYGEAGWKGEV 233 Query: 329 YVMQSN------GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 ++ ++ + +R+ + + P W + F + S + I V + Sbjct: 234 ELLSTDIYIFLTRNGTRRVKIIENGGW--PSWVDDST-LYFHRSSEKDGWISVYRATLPS 290 Query: 383 ERLLVEDS-----------NLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDL 423 L DS + P SP + + + + ++ + DL Sbjct: 291 HTSLSTDSVIIERVTPPGVHAFTPATSPGNKKFIAVATRRPNSDYRHIELFDL 343 >gi|227822240|ref|YP_002826211.1| putative TolB-like protein [Sinorhizobium fredii NGR234] gi|227341240|gb|ACP25458.1| putative TolB-like protein [Sinorhizobium fredii NGR234] Length = 275 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 16/236 (6%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L + DGA + SP+ +A + + +YL+ + Sbjct: 40 NGDGRLYRLGVDGAEPTEIDTGFAGQCNNDHGISPDGNTLAISDKTEFGKSAIYLLPSEG 99 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 GN S +S +G+ +D+ DIY++ + RLT+ N Sbjct: 100 GAPRLVTGNLPSYWHG--WSPDGRMLTYCGIRDQVFDIYTISVDGGEERRLTHGEGRNDG 157 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD + I F S R G+ Q++ ++ +GSD +RI+ +F P SP G + + Sbjct: 158 PDWSPDGAWIYFNSSRTGRMQIWRVRPDGSDVQRITDSPYGDWF-PHPSPDGRHLLVLSY 216 Query: 367 SGEKF--------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKK 410 G+ F + +M +G R+L E + P WSP+G + F R Sbjct: 217 DGDVFDHPRDLDVRLRLMDPEGGNARVLFELFGGQGTMNVPNWSPNGDAFAFVRYS 272 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 20/253 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAP 263 + ++++ P +SP+ + + R+Y + + F Sbjct: 16 RVVWQTERLVEAPNWSPDGKFLI-----INGDGRLYRLGVDGAEPTEIDTGFAGQCNNDH 70 Query: 264 RFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 S +G IS + + IY + + A RL + +SPD + + R Sbjct: 71 GISPDGNTLAISDKTEFGKSAIYLLPSEGGAP-RLVTGNLPSYWHGWSPDGRMLTYCGIR 129 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +Y + +G +++R++ E P WSP G I F + I ++ DGS Sbjct: 130 DQVFDIYTISVDGGEERRLTH-GEGRNDGPDWSPDGAWIYFNSSRTGRMQIWRVRPDGSD 188 Query: 383 ERLLVED-SNLQAPTWSPSGRSLIFSRKKDG------DTGSKLYSIDLNGRNETLI---- 431 + + + P SP GR L+ D +L +D G N ++ Sbjct: 189 VQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPEGGNARVLFELF 248 Query: 432 NTPAYASDPQWVG 444 + P W Sbjct: 249 GGQGTMNVPNWSP 261 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 15/201 (7%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--I 303 + + ++ AP +S +GK +I + +Y + + + Sbjct: 11 TTGEARVVWQTERLVEAPNWSPDGKFLII----NGDGRLYRLGVDGAEPTEIDTGFAGQC 66 Query: 304 NISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N SPD + + SD+ GK +Y++ S G + ++ + WSP G ++ Sbjct: 67 NNDHGISPDGNTLA-ISDKTEFGKSAIYLLPSEGGAPRLVT--GNLPSYWHGWSPDGRML 123 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + F I + DG +ER L P WSP G + F+ + G +++ Sbjct: 124 TYCGIRDQVFDIYTISVDGGEERRLTHGEGRNDGPDWSPDGAWIYFNSSRTGRM--QIWR 181 Query: 421 IDLNGRN-ETLINTPAYASDP 440 + +G + + + ++P P Sbjct: 182 VRPDGSDVQRITDSPYGDWFP 202 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 83/199 (41%), Gaps = 14/199 (7%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 ++ S + K+++ ++ +G R +T + + +SP+ + + Y D + + Sbjct: 79 LAISDKTEFGKSAIYLLPSEGGAPRLVT--GNLPSYWHGWSPDGRMLTYCGIRD-QVFDI 135 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y + +R+ + P +S +G + + M I+ V + +R+T+ Sbjct: 136 YTISVD-GGEERRLTHGEGRNDGPDWSPDGAWIYFNSSRTGRMQIWRVRPDGSDVQRITD 194 Query: 300 TLFINISASYSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRI--SQDKEASY 349 + + + SPD + VF+ R+ +L +M G + + + + + Sbjct: 195 SPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPEGGNARVLFELFGGQGTM 254 Query: 350 FDPVWSPQGDLIAFTKFSG 368 P WSP GD AF ++S Sbjct: 255 NVPNWSPNGDAFAFVRYSP 273 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D+ + + T + + ++SPD ++ G +LY + +G++ I Sbjct: 7 IFDITTGEARVVWQTERLVEAPNWSPDGKFLI----INGDGRLYRLGVDGAEPTEIDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + SP G+ +A + K K AI ++ +G RL+ + WSP GR Sbjct: 63 AGQCNNDHGISPDGNTLAISDKTEFGKSAIYLLPSEGGAPRLVTGNLPSYWHGWSPDGRM 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + + D +Y+I ++G E + P ++ D W+ F Sbjct: 123 LTYCGIR--DQVFDIYTISVDGGEERRLTHGEGRNDGPDWSPDGAWIYF 169 >gi|284035677|ref|YP_003385607.1| amidohydrolase [Spirosoma linguale DSM 74] gi|283814970|gb|ADB36808.1| amidohydrolase [Spirosoma linguale DSM 74] Length = 1005 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 12/226 (5%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+++++ D+ + K + + P +S +G+R D Sbjct: 49 SPDKRQIVI------DLQGTIWLLPATGGVAKPLTDPLGDCRQPSWSPDGQRIAFHSFWD 102 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 I++V ++LTN ++ + +SPD Q+VF SDR G ++ + Sbjct: 103 GRYHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVFASDRSGNYDIWQLNLADGKLT 162 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 +++ + + F+P +SP G IA+ + + ++ G+++ + S L +W P Sbjct: 163 QLT-NGSGNEFNPAYSPNGKQIAYISDRTDAPGVYILPLGGTEKLVAPTMSKLAGVSWHP 221 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP---QW 442 G L + +T S L S+ ++ ++ P W Sbjct: 222 DGSQLFY--NLLNNTQSGLTSVSVSDGKARMLTEAKEDVFPFRTSW 265 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 102/251 (40%), Gaps = 10/251 (3%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 ++D I +T +G + L + + ++ ++ ++ G + LT +P Sbjct: 30 LADSI--RVTVTEGTNMAADLSPDKRQIVIDLQGTIWLLPATGGVAKPLTDPLGD-CRQP 86 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ Q++A+ ++ D + P+++ N P +S +GK+ + + Sbjct: 87 SWSPDGQRIAFHSFWDGR--YHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVFASD 144 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + DI+ ++L +LTN + +YSP+ QI + SDR +Y++ G++ Sbjct: 145 RSGNYDIWQLNLADGKLTQLTNGSGNEFNPAYSPNGKQIAYISDRTDAPGVYILPLGGTE 204 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-- 395 + + + W P G + + + + + + + R+L E P Sbjct: 205 K--LVAPTMSKLAGVSWHPDGSQLFYNLLNNTQSGLTSVSVSDGKARMLTEAKEDVFPFR 262 Query: 396 -TWSPSGRSLI 405 +W L Sbjct: 263 TSWFSMDSYLY 273 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 104/285 (36%), Gaps = 50/285 (17%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 D D + + + SP+ +++A+A D + T+ + Sbjct: 302 RNSYKRKTYDFDTQKPQLVKGIKGT-----SISPDGKQIAFAALGD------LWLLTKGN 350 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + P+R+ ++M + P +S +G + ++ MD++ DL++ L + Sbjct: 351 KVPQRLTQGKAMEVEPGWSPDGSKLTYVSDRNGNMDVWIRDLKTGQDRLLADMSDDLHYP 410 Query: 308 SYSPDSSQIVF-ESDRE---GKEQLYVMQSN-----GSDQKRISQDKEASYFDPVWSPQG 358 ++SPD S+I F +SD G+ LYV + + R + WSP G Sbjct: 411 TWSPDGSKIAFYQSDPRNAWGRSTLYVADVTYTADVTAPKTRKLHESLFVPSQASWSPDG 470 Query: 359 DLIAF-------TKFSGEKFAIGVMKKDGSQERLLV-------EDSNLQAPTWSPSGRSL 404 +A +++ + ++ DG +R + P WSP G + Sbjct: 471 KTLAVSALHPYSSRYREGVSEVLLLSFDGKNDRYVSPAPNHSLATRGQNGPVWSPDGTKM 530 Query: 405 IFSRKKDGDTGSKLYSIDL--NGRNETLINTPA-----YASDPQW 442 + L+ D+ +G T I TP A P W Sbjct: 531 AYV------LDGLLWITDVKPDG---TPIGTPRQLTTEQAETPTW 566 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R+T T N++A SPD QIV D +G ++++ + G K ++ D P WS Sbjct: 35 RVTVTEGTNMAADLSPDKRQIV--IDLQGT--IWLLPATGGVAKPLT-DPLGDCRQPSWS 89 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 P G IAF F ++ I + G + + L + + P WSP G+ L+F+ + G Sbjct: 90 PDGQRIAFHSFWDGRYHIWTVSATGGKPQQLTNGIYDDREPHWSPDGKQLVFASDRSG-- 147 Query: 415 GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ ++L +G+ L N +P + Sbjct: 148 NYDIWQLNLADGKLTQLTNGSGNEFNPAYSP 178 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 34/258 (13%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L ++ + + LT + + EP +SP+ K+ Y + + + + V++ D + + + Sbjct: 342 DLWLLTKGNKVPQRLTQGK-AMEVEPGWSPDGSKLTYVSDRNGN-MDVWIRDLKTGQD-R 398 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMD----------IYSVDLQSNATERLTNTL 301 + + + P +S +G + Y+ D+ + T +L +L Sbjct: 399 LLADMSDDLHYPTWSPDGSKIAFYQSDPRNAWGRSTLYVADVTYTADVTAPKTRKLHESL 458 Query: 302 FINISASYSPDSSQIV------FES-DREGKEQLYVMQSNGSDQKRISQDKEASY----- 349 F+ AS+SPD + + S REG ++ ++ +G + + +S S Sbjct: 459 FVPSQASWSPDGKTLAVSALHPYSSRYREGVSEVLLLSFDGKNDRYVSPAPNHSLATRGQ 518 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIF 406 PVWSP G +A+ I +K DG R L + + PTW+ +SL+F Sbjct: 519 NGPVWSPDGTKMAYVL--DGLLWITDVKPDGTPIGTPRQLTTE-QAETPTWTSDSKSLLF 575 Query: 407 SRKKDGDTGSKLYSIDLN 424 D ++Y D + Sbjct: 576 LAT---DIFKQVYLADGH 590 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%) Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAP 395 D R++ E + SP I I ++ G + L + + + P Sbjct: 32 DSIRVT-VTEGTNMAADLSPDKRQIVIDLQG----TIWLLPATGGVAKPLTDPLGDCRQP 86 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 +WSP G+ + F DG ++++ G + + L N +P W Sbjct: 87 SWSPDGQRIAFHSFWDGR--YHIWTVSATGGKPQQLTNGIYDDREPHWSP 134 >gi|313681892|ref|YP_004059630.1| translocation protein tolb [Sulfuricurvum kujiense DSM 16994] gi|313154752|gb|ADR33430.1| translocation protein TolB [Sulfuricurvum kujiense DSM 16994] Length = 415 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 72/415 (17%), Positives = 172/415 (41%), Gaps = 27/415 (6%) Query: 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +L+ L F A ++V SP++I + + D L K +++++ D+ Sbjct: 3 IILIFLTLVQFSWGADATLEVVKGVGGLSPLAIEDSSLQTSD-LSRKFTQMLAADMNVVS 61 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 +F + Q + P+ QD AQ L+ R++ +G +R + ++ +++ Sbjct: 62 LFT-VDQSYASVPFNSLSPSPQHQD-----AQYLIRYRLVDDGAGGMRADVKM--LQNGN 113 Query: 138 QIIGKKFFSSPASWR-KIAHTISDDIYQSITGEKGDFNSR-ILFVSESVVSGIIKNSLCV 195 + K + + ++H I+ DI + G D+ R ++FV + ++ + V Sbjct: 114 EFFAKSYILKQSEMAVFLSHAIAYDINAKLGGSPIDWIKRKVVFVRLTSPK---RSEIVV 170 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D + + + + +++ ++Q Y T + +Y + + + K + + Sbjct: 171 SDYTLSYQKVVMSG--GMYGFAKWANSEQSEVYYTSLLDFKPTIYKLSLQSGKKDKIVSS 228 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 M + S + KR L+++ + DIY DL S A ++TN I+++ + D S Sbjct: 229 -DGMAVCSDVSEDSKRLLLTLAPNGQPDIYLFDLTSGAKTQITNYSGIDVNGQFMGDGS- 286 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------TKFSGE 369 I F S+R G ++ + N + ++ + + S + + + F+G Sbjct: 287 IAFVSNRLGYPNIFSTRMNSTAVSQLVYHGKNN---SSLSSYKNFLVYKARENSATFAGN 343 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + + L P +S G ++++ +++ + + +N Sbjct: 344 SFNLHLLSLNSGNVQRLTASGENDFPKFSYDGEAILYIKQEGARSSVGVIRFGVN 398 >gi|91772443|ref|YP_565135.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM 6242] gi|91711458|gb|ABE51385.1| protein with TolB-like beta propeller domains [Methanococcoides burtonii DSM 6242] Length = 354 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 111/255 (43%), Gaps = 11/255 (4%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT--YDDEDILRVYLMDTR 245 + ++ M+ DG N + S EP F+ + ++ +A+ + + + Sbjct: 61 SSEQTIWTMNSDGTNKNEIYDS-IVWDGEPVFNTDGDRLYFASEHVNPYSAKFISIHVVD 119 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 ID + + + AP S +G + + +I+ +D+ + ++T++ Sbjct: 120 IDGLNRTQITKNADMRAPAVSPDGTQLAYLSKLSGNYEIWVMDIDGSNQTQITDSDIDEG 179 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 ++SPD I++ + ++ + G I ++ + ++PV++P+G +A+ Sbjct: 180 VPAWSPDGKHIIYSLE----GNIWKVNI-GPKVPSILKENYYTSYNPVFNPEGTKVAYVL 234 Query: 366 FSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + I +M DG + L D + P WSP G+S+ +S K G+ ++ ++L+ Sbjct: 235 ETNGVKDIWIMNADGKGTKQLTFSDQDEIDPAWSPDGKSIAYSSNKAGEF--NIWKMELS 292 Query: 425 GRNETLINTPAYASD 439 T+ + P Y + Sbjct: 293 MTEATIPHDPEYKDE 307 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 110/235 (46%), Gaps = 14/235 (5%) Query: 160 DDIYQSIT-GEKGDFNS---RILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQIL 214 ++IY SI + FN+ R+ F SE V K S+ V+D DG N +T + D + Sbjct: 77 NEIYDSIVWDGEPVFNTDGDRLYFASEHVNPYSAKFISIHVVDIDGLNRTQITKNAD--M 134 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P SP+ ++AY + + +++MD +I + P +S +GK + Sbjct: 135 RAPAVSPDGTQLAYLSKLSGN-YEIWVMDID-GSNQTQITDSDIDEGVPAWSPDGKHIIY 192 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 S++ + I+ V++ L + + + ++P+ +++ + + G + +++M ++ Sbjct: 193 SLEGN----IWKVNIGPKVPSILKENYYTSYNPVFNPEGTKVAYVLETNGVKDIWIMNAD 248 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 G K+++ + DP WSP G IA++ +F I M+ ++ + + Sbjct: 249 GKGTKQLTF-SDQDEIDPAWSPDGKSIAYSSNKAGEFNIWKMELSMTEATIPHDP 302 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 51/231 (22%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 +AP +S + R + S ++ I++++ + +++ + ++ D ++ F Sbjct: 45 NQVAPAWSPDSDRIVYSSEQ----TIWTMNSDGTNKNEIYDSIVWDGEPVFNTDGDRLYF 100 Query: 319 ESDREGKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 S+ ++V+ +G ++ +I+ K A P SP G +A+ + I Sbjct: 101 ASEHVNPYSAKFISIHVVDIDGLNRTQIT--KNADMRAPAVSPDGTQLAYLSKLSGNYEI 158 Query: 374 GVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD--------------------- 411 VM DGS + + + D + P WSP G+ +I+S + + Sbjct: 159 WVMDIDGSNQTQITDSDIDEGVPAWSPDGKHIIYSLEGNIWKVNIGPKVPSILKENYYTS 218 Query: 412 -----------------GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 + ++ ++ +G+ + L + DP W Sbjct: 219 YNPVFNPEGTKVAYVLETNGVKDIWIMNADGKGTKQLTFSDQDEIDPAWSP 269 Score = 44.6 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASD 439 + L E N AP WSP +++S ++ +++++ +G N+ I + + Sbjct: 35 TDHYQLTEGINQVAPAWSPDSDRIVYSSEQT------IWTMNSDGTNKNEIYDSIVWDGE 88 Query: 440 P 440 P Sbjct: 89 P 89 >gi|262383138|ref|ZP_06076275.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296016|gb|EEY83947.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 304 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S + +++A + ED P+ I L +S +GK+ ++ Sbjct: 97 ISADGKQIAISNGTKEDGKSRVYTLPFEGGVPRLITPLGPSYLH-GWSPDGKQLAYCAER 155 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + D+Y + +RLT ++ YSP I F S R G Q++ M+++GS+Q Sbjct: 156 NGNFDVYVIPSLGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 215 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G I F + + + +M +G + + LV Sbjct: 216 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVELRLMPAEGGEPKTLV 275 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P + F + Sbjct: 276 KLFGGQGTINVNSWAPDSKRFAFVSYR 302 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 17/271 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I + + L VMD R + ++ P ++P+ + Y + Sbjct: 13 IAVFCTHAQKKNVTSVLEVMDIT-TGQRSVVKEFPFLIEAPNWTPDGNWLVYNS-----G 66 Query: 237 LRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALIS--VQKDEAMDIYSVDLQSN 292 ++Y + P+ I + + S++GK+ IS ++D +Y++ + Sbjct: 67 GKLYKLSPESPGEPQLINSDYATRCNNDHVISADGKQIAISNGTKEDGKSRVYTLPFEGG 126 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +T L + +SPD Q+ + ++R G +YV+ S G ++KR++ E P Sbjct: 127 VPRLIT-PLGPSYLHGWSPDGKQLAYCAERNGNFDVYVIPSLGGEEKRLTT-AEGLDDGP 184 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKK 410 +SP G I F + MK DGS++ + E N P SP G+ ++F Sbjct: 185 EYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYT 244 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 GD + + +N L PA +P+ Sbjct: 245 KGDLEPGQHLAN---KNVELRLMPAEGGEPK 272 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 40/135 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M DG+ +T + + P SP+ +++ + TY D+ Sbjct: 204 QVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEP------------- 250 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF----INISA 307 G+ ++ +++ + + + L IN++ Sbjct: 251 -----------------GQHLA-----NKNVELRLMPAEGGEPKTLVKLFGGQGTINVN- 287 Query: 308 SYSPDSSQIVFESDR 322 S++PDS + F S R Sbjct: 288 SWAPDSKRFAFVSYR 302 >gi|152990959|ref|YP_001356681.1| translocation protein TolB [Nitratiruptor sp. SB155-2] gi|151422820|dbj|BAF70324.1| Tol biopolymer transport system component TolB [Nitratiruptor sp. SB155-2] Length = 407 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 62/395 (15%), Positives = 146/395 (36%), Gaps = 36/395 (9%) Query: 22 VLIGGFFPTSIHAF-VKVATNSANYSPVSIAFTKFVSIDE--LGGKVSEVVSKDLQRSDV 78 ++ +++A + + + I S L K ++++ DL+ + Sbjct: 4 LIFFVLLSLTLYAQDMTLEIVKDVGNRPKIVVEDHSSNINYMLRKKFLKLINADLEVTSH 63 Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F+++ + + L+ ++ + L E D+ + Sbjct: 64 FDVL---------KDESGVHNEG--------YLLKYELMYDDYGHLCAEILFADLVQKVI 106 Query: 139 IIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD 197 ++ K++ S + +AH I DI + F FV S G + + + D Sbjct: 107 LLKKRYKISDNDRYPFLAHRIVYDINAKLHLPDVSFLKS--FVVFSKYVGPRRADIVISD 164 Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 + + + P+++ ++ + A+ + + +Y +D K I + Sbjct: 165 YTLTYQKTVVHG--GLNIFPKWA-DRTQRAFYYTSMQKVPTLYKVDIYKGTRTKIIQS-E 220 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 M++ S +GK+ L+++ + DIY +DL RLT I+++ +Y D +IV Sbjct: 221 GMLVCSDVSKDGKKLLLTMAPNYQPDIYELDLTKKTLRRLTTYPGIDVNGNYVEDGRRIV 280 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------F 371 F SDR G ++ + +R+ + + + D + ++ + F Sbjct: 281 FVSDRLGNPTIFAKRIGSKAVERVVYHGKNNSACTTY---KDYVVYSSRETDNAFGSNTF 337 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + + R L + P ++ G +++F Sbjct: 338 NLYLTSTTSDYIRRLTANGVNIFPRFAADGETILF 372 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 12/122 (9%) Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 +NI ++ + + + + + LY + + +I Q E S G Sbjct: 175 HGGLNIFPKWADRTQRAFYYTSMQKVPTLYKVDIYKGTRTKIIQ-SEGMLVCSDVSKDGK 233 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE------DSNLQAPTWSPSGRSLIFSRKKDGD 413 + T + I + R L + N GR ++F + G+ Sbjct: 234 KLLLTMAPNYQPDIYELDLTKKTLRRLTTYPGIDVNGNYVE-----DGRRIVFVSDRLGN 288 Query: 414 TG 415 Sbjct: 289 PT 290 >gi|332883941|gb|EGK04221.1| hypothetical protein HMPREF9456_01249 [Dysgonomonas mossii DSM 22836] Length = 292 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 16/206 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++A + + P+++ L +S +GK ++ Sbjct: 82 SPDGKRLAVSHRSLPQGRPTVFILPAEGGTPRQVTPSAPSYLH-GWSPDGKSLTYCANRE 140 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 MD+Y++++ RLT + +N Y+P I F S R G QL+ M+++GS+Q Sbjct: 141 GEMDVYTININGTNETRLTFSEGLNDGPEYTPKGKYIWFNSVRTGLMQLWRMKTDGSEQT 200 Query: 340 RISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLVE 388 +++ D++ + + P SP G + + + I +M G + + L++ Sbjct: 201 QMTFDEDRNSWFPHISPDGKHVVYIAYKKGDLEPHEHLRYKNVEIRIMSATGGKPQTLIK 260 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKK 410 +WSP + + R K Sbjct: 261 LFGGQGTFNVNSWSPDSKCFAYVRYK 286 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 99/262 (37%), Gaps = 25/262 (9%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM- 259 N L ++ P ++ + + + Y + +Y + T F + Sbjct: 21 TNKSILIKEFPYLIEAPDWTSDGKWLIYNSEGL-----IYKLSTSGGEPQLIDTGFANQC 75 Query: 260 ILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 S +GKR +S + ++ + + ++T + +SPD + Sbjct: 76 NNDHLVSPDGKRLAVSHRSLPQGRPTVFILPAEGGTPRQVT-PSAPSYLHGWSPDGKSLT 134 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 + ++REG+ +Y + NG+++ R++ E P ++P+G I F + MK Sbjct: 135 YCANREGEMDVYTININGTNETRLTF-SEGLNDGPEYTPKGKYIWFNSVRTGLMQLWRMK 193 Query: 378 KDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGD---------TGSKLYSIDLN-G 425 DGS++ + ED N P SP G+ +++ K GD ++ + G Sbjct: 194 TDGSEQTQMTFDEDRNSWFPHISPDGKHVVYIAYKKGDLEPHEHLRYKNVEIRIMSATGG 253 Query: 426 RNETLINTPAYASD---PQWVG 444 + +TLI W Sbjct: 254 KPQTLIKLFGGQGTFNVNSWSP 275 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI----------LRVYL 241 L M DG+ +T D+ + P SP+ + V Y Y D+ + + + Sbjct: 188 QLWRMKTDGSEQTQMTFDEDRNSWFPHISPDGKHVVYIAYKKGDLEPHEHLRYKNVEIRI 247 Query: 242 MDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALISVQKDE 280 M + I F +S + K K E Sbjct: 248 MSATGGKPQTLIKLFGGQGTFNVNSWSPDSKCFAYVRYKTE 288 >gi|94970511|ref|YP_592559.1| WD-40-like beta propeller repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94552561|gb|ABF42485.1| WD40-like beta Propeller [Candidatus Koribacter versatilis Ellin345] Length = 367 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 56/319 (17%), Positives = 124/319 (38%), Gaps = 42/319 (13%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHT----ISDDIYQSITGEKGDFNSRILFVSESVVS-- 186 + + +FS+ + H D IY ++ +L +S + Sbjct: 47 TFGGQN--AEAYFSADDKYLIFQHQGDGVPCDQIYTMEVDPVKANHATLLDLSLAPPKLV 104 Query: 187 --GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G + + G I + + P+ P+ K + D ++Y Sbjct: 105 STGKGRTTCSYWFPSGERILFSSTHAANAECPPK--PDYSK--GYVWPIYDTYQIYTAKA 160 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 K++ + + + +GK + + ++ +DIY++D + ++LT+ L + Sbjct: 161 D-GSDLKQLTHEKGYNAEATITRDGKHIVFTSTRNGDLDIYTMDADGSHVKQLTHELGYD 219 Query: 305 ISASYSPDSSQIVFESD--------------------REGKEQLYVMQSNGSDQKRISQD 344 +S D +IV+ + R G +L+VM ++GS++ +++++ Sbjct: 220 GGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRPGNLELWVMNADGSNKHQVTRN 279 Query: 345 KEASYFDPVWSPQGDLIAFTKF-----SGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWS 398 A+ F P W P G I F +G F + ++ +DG QER+ P ++ Sbjct: 280 GAAN-FAPYWLPDGKRIIFASNQADPKNGRDFDLYIINEDGTGQERITFHPDFDGFPMFT 338 Query: 399 PSGRSLIFSRKKDGDTGSK 417 G+ L+++ ++G + Sbjct: 339 SDGKRLVWASNRNGKAPHE 357 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 100/297 (33%), Gaps = 61/297 (20%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDR------------ 248 N+R LT FS + + + + D ++Y M+ + Sbjct: 42 NVRQLTFGGQNAEAY--FSADDKYLIFQHQGDGVPCDQIYTMEVDPVKANHATLLDLSLA 99 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQK--------------------DEAMDIYSVD 288 PK + + + +G+R L S + IY+ Sbjct: 100 PPKLVSTGKGRTTCSYWFPSGERILFSSTHAANAECPPKPDYSKGYVWPIYDTYQIYTAK 159 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + ++LT+ N A+ + D IVF S R G +Y M ++GS K+++ + Sbjct: 160 ADGSDLKQLTHEKGYNAEATITRDGKHIVFTSTRNGDLDIYTMDADGSHVKQLTHEL-GY 218 Query: 349 YFDPVWSPQGDLIAFTKF--------------------SGEKFAIGVMKKDGSQERLLVE 388 P WS G I + + VM DGS + + Sbjct: 219 DGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRPGNLELWVMNADGSNKHQVTR 278 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLIN-TPAYASDP 440 + AP W P G+ +IF+ + + LY I+ +G + I P + P Sbjct: 279 NGAANFAPYWLPDGKRIIFASNQADPKNGRDFDLYIINEDGTGQERITFHPDFDGFP 335 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 56/272 (20%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--DIY 285 ++ +D + + R F FS++ K + Q D IY Sbjct: 20 FSLVRAQDAAKPLTLPEEKHLKNVRQLTFGGQNAEAYFSADDKYLIFQHQGDGVPCDQIY 79 Query: 286 SV-------------DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK------- 325 ++ DL + ++ + + P +I+F S Sbjct: 80 TMEVDPVKANHATLLDLSLAPPKLVSTGKGRTTCSYWFPSGERILFSSTHAANAECPPKP 139 Query: 326 -------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 Q+Y +++GSD K+++ +K + + + G I FT Sbjct: 140 DYSKGYVWPIYDTYQIYTAKADGSDLKQLTHEKGYNA-EATITRDGKHIVFTSTRNGDLD 198 Query: 373 IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD------------------ 413 I M DGS + L + P WS G+ +++ + + Sbjct: 199 IYTMDADGSHVKQLTHELGYDGGPFWSYDGKKIVYRAQHPKNAEEEKDYRDLLGKGLIRP 258 Query: 414 TGSKLYSIDLNGRNETLINTPAYASD-PQWVG 444 +L+ ++ +G N+ + A+ P W+ Sbjct: 259 GNLELWVMNADGSNKHQVTRNGAANFAPYWLP 290 >gi|78777595|ref|YP_393910.1| translocation protein TolB [Sulfurimonas denitrificans DSM 1251] gi|78498135|gb|ABB44675.1| putative tonB-independent protein-uptake protein [Sulfurimonas denitrificans DSM 1251] Length = 417 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 71/417 (17%), Positives = 165/417 (39%), Gaps = 26/417 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MKI + +L V++ F A + V + +++ K + V D Sbjct: 1 MKIIVSILFVIVSMFAN---DATIDVVKKADTLPSIALEDASVSYDSTFKAKFFKTVVAD 57 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L +FN+ Q+ N D+ + + ++ ++ ++ L V+ +L++ Sbjct: 58 LNVLSIFNV----DKVQRDVNFDASSVLVE--NKNMNYVLRYKLSQDDNSALNVDIKLFN 111 Query: 133 VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 K+ + K + + + + +AHTI+ DI + ++ R + S + ++ Sbjct: 112 -KEGSIVFNKNYKVNSSDIYMFVAHTIAYDINSFMGESPIEWIKRKVIFSRMLSP--QRS 168 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V D + P+++ +Q Y T +E + +D + + K Sbjct: 169 ELVVTDYTLTYQHVIVKG--GFNLFPKWANKEQSAFYYTSLNETKPTLKYLDLKTGK-SK 225 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 I + M++ + +G + L ++ + DI+ D+++ T++LTN I++ + Sbjct: 226 VIKSSDGMMICSDINEDGSKLLFTMAPNGQPDIFLYDIKTQNTKKLTNYGGIDVGGQFMG 285 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------K 365 D ++F SDR G ++ + ++I +++ S G + + Sbjct: 286 D-DSVIFVSDRLGYPNVFSLNIKSGSVEQIVYYGKSNSAC---SVHGKYVVYKARESSDS 341 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 FS F + ++ + R L + P +S G ++IF + + + ++ Sbjct: 342 FSNNTFNLHLVSMESDFVRRLTAVGVNEFPKFSVDGDAVIFVKNYQSQSSVGIIRLN 398 >gi|268679161|ref|YP_003303592.1| TolB domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617192|gb|ACZ11557.1| TolB domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 422 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 160/421 (38%), Gaps = 26/421 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSID-ELGGKVSEVVSK 71 +K +CL++ F + A V++ +++ ++D L K +++ Sbjct: 2 IKKMICLMVF---ALFSYAADATVEIVKKIDVLPKIAVQDASAKNVDMALRQKFFKLLVG 58 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL+ S F ++ + + Q F + ++ + + + + Sbjct: 59 DLRVSSHFQVVDE--YLQSSYEGGPFENF--LSEKKVDSILRFSINSN-INTMSANVKFI 113 Query: 132 DVKDRKQIIGKKFFSSPASWR-KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 + K K + + +AH I D+ I + + + ++ +G K Sbjct: 114 NAKTGATTFEKAYSLNDLKRHPFLAHKIIIDVNDQIGAPSIKWMEQSVIFAKY--TGTKK 171 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + + V D + + + + P+++ +QQ Y T + +Y D R A Sbjct: 172 SEIVVSDYTLSYQKVMVAG--GLNIFPKWANDQQNAFYYTSYNGAEPTIYHYDLRTG-AR 228 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 K I + MI+ S +G + L+++ + DIY D++S ++T I+++ ++ Sbjct: 229 KSIISSNGMIVCSDVSKDGSKLLLTMAPKDQPDIYLYDVKSRKITKITEYAGIDVNGNFI 288 Query: 311 PDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 + +I F SDR G ++ + S +K + K + S + I ++ + Sbjct: 289 DNDRRIAFVSDRLGNPDIFAQGIYDKSFEKLVYHGKNKN----SISTYDNYIVYSSREAD 344 Query: 370 K------FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 F + ++ + R L P ++ ++++ ++ + + ++ Sbjct: 345 NAFGRNTFNLYLISTNTDYLRQLTAAGENLYPRFANDPDTIMYIKQFGNQSALGIIRLNA 404 Query: 424 N 424 N Sbjct: 405 N 405 >gi|157164610|ref|YP_001466350.1| translocation protein TolB [Campylobacter concisus 13826] gi|112800116|gb|EAT97460.1| protein TolB [Campylobacter concisus 13826] Length = 418 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 159/413 (38%), Gaps = 22/413 (5%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKF---VSIDELGGKVSEVVSKDLQR 75 + L L + A + V N P IA VS K +++ DL+ Sbjct: 4 IFLFLCVALGLYAADATISV-INQGVALP-KIALQDATTAVSDAGFRDKFFKIMLGDLKV 61 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 S F +I +D + D G +++ + L + +L D K Sbjct: 62 SSDFEVI-EDHVPSTYEGTAATNTMSD---KGVELIFRYALEGSMGSPLTLRVKLIDAKT 117 Query: 136 RKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 + + A + +AH ++ + + + + +++ ++S+ Sbjct: 118 ATTRYERVYNMPDGAKYPFLAHKSIVELTNELNLPPVGWMEKFIILAKYTS--ARQSSII 175 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFS-PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D + + + P+++ +Q K Y +Y + ++ D K I Sbjct: 176 VADYTLTYQKTIVSG--GLNIFPKWAGADQSKFYYTSYVNNKP-TLFRYDLNSGTKTKII 232 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + M++A S +G + L+++ + DI+ + S ++TN I+++ ++ + Sbjct: 233 DSV-GMLIASDVSKDGSKILLTMAPKDQPDIFIYNTGSKNLTQITNYPGIDVNGNFVDND 291 Query: 314 SQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKF 371 S+IVF SDR G ++ + +G +++ + + + + + ++ + F Sbjct: 292 SRIVFVSDRLGYPNIFATPATSGGSVEQMVFHGKNNNSVSTF---ENYVVYSSREASGGF 348 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I ++ R L + P +S G+S++F ++ G + + ++ N Sbjct: 349 NIYLISTQTDFIRQLTANGKNNYPRFSSDGQSVVFIKELGGQSSLGVVRLNEN 401 >gi|148977418|ref|ZP_01814018.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] gi|145963370|gb|EDK28635.1| translocation protein TolB precursor [Vibrionales bacterium SWAT-3] Length = 161 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 +Y++DL + ++T N + PD ++F SDR GK Q+Y + + + RI+ Sbjct: 1 MYTLDLATRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITW 60 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + +P G + S F + + ++L + ++P+ +P+G Sbjct: 61 QGSQNLGGQ-ITPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTLLDESPSIAPNGGM 119 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 +I+S + + L + ++GR + L T P W F+ Sbjct: 120 VIYSSIYN--KTNVLSMVSIDGRFKARLPATNGRVRAPAWSPFL 161 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 3/154 (1%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R +I RS P + +GK + + + IY+V+L +N+T R+T N+ Sbjct: 8 TRKLTQITRGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYNVNLSNNSTSRITWQGSQNLG 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +PD ++ + L + +++ P +P G ++ ++ Sbjct: 68 GQITPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTL--LDESPSIAPNGGMVIYSSI 125 Query: 367 SGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSP 399 + + ++ DG + RL + ++AP WSP Sbjct: 126 YNKTNVLSMVSIDGRFKARLPATNGRVRAPAWSP 159 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + +D + +T R EP + P+ + + + + D ++Y ++ + + R Sbjct: 1 MYTLDLATRKLTQITRGRSN-NTEPFWHPDGKSLIFTS-DRGGKPQIYNVNL-SNNSTSR 57 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I S L + + +G+ ++ + + ++ DL++ A + LT TL ++ S S +P+ Sbjct: 58 ITWQGSQNLGGQITPDGRFLIMVNRSNSGFNLAKQDLETGAVQVLTKTL-LDESPSIAPN 116 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +++ S L ++ +G + R+ P WSP Sbjct: 117 GGMVIYSSIYNKTNVLSMVSIDGRFKARL-PATNGRVRAPAWSP 159 >gi|251795982|ref|YP_003010713.1| periplasmic component of the Tol biopolymer transport system [Paenibacillus sp. JDR-2] gi|247543608|gb|ACT00627.1| periplasmic component of the Tol biopolymer transport system [Paenibacillus sp. JDR-2] Length = 285 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 17/206 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++A + + ED P + L +S +G+ ++ Sbjct: 79 SPDNIRLAVSHHTREDGQSRIYTFPLEGGDPVLVTPMGPSYLH-GWSPDGRTLAYCAERK 137 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DIY++ +LTNT ++ YSPD I F S R G Q++ M+++GS+Q Sbjct: 138 GQYDIYTIPAIGGEETQLTNTPGLDDGPEYSPDGGYIWFNSVRTGLMQVWRMKADGSEQT 197 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----------FAIGVMKKDGSQERLLVE 388 +++ D+ S+F P SP G L+A+ + + +M +G + R LV+ Sbjct: 198 QMTFDESNSWF-PHVSPDGKLVAYITYRKGDVAPGDHPANKHVELRLMDSNGGEYRTLVQ 256 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKK 410 + +WSP R L F + Sbjct: 257 LFGGQGTINVNSWSPDSRKLAFVSYR 282 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 100/259 (38%), Gaps = 24/259 (9%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-IL 261 R + + D ++ P ++ + + + Y + R+Y + + +F Sbjct: 20 ERSVLATFDYLIEAPNWTSDGKTLIYNSKG-----RIYSFHIEEGSSTEIPSSFAVHCNN 74 Query: 262 APRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S + R +S ++D IY+ L+ +T + + +SPD + + Sbjct: 75 DHVLSPDNIRLAVSHHTREDGQSRIYTFPLEGGDPVLVT-PMGPSYLHGWSPDGRTLAYC 133 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 ++R+G+ +Y + + G ++ +++ + P +SP G I F + MK D Sbjct: 134 AERKGQYDIYTIPAIGGEETQLT-NTPGLDDGPEYSPDGGYIWFNSVRTGLMQVWRMKAD 192 Query: 380 GSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGS---------KLYSIDLNGRNET 429 GS++ + ++SN P SP G+ + + + GD +L +D NG Sbjct: 193 GSEQTQMTFDESNSWFPHVSPDGKLVAYITYRKGDVAPGDHPANKHVELRLMDSNGGEYR 252 Query: 430 ----LINTPAYASDPQWVG 444 L + W Sbjct: 253 TLVQLFGGQGTINVNSWSP 271 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 78/191 (40%), Gaps = 13/191 (6%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI--N 304 + F +I AP ++S+GK + + IYS ++ ++ + ++ + N Sbjct: 18 TGERSVLATFDYLIEAPNWTSDGKTLIY----NSKGRIYSFHIEEGSSTEIPSSFAVHCN 73 Query: 305 ISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD+ ++ + +G+ ++Y G D ++ + WSP G +A Sbjct: 74 NDHVLSPDNIRLAVSHHTREDGQSRIYTFPLEGGDPVLVTPMGPSYLHG--WSPDGRTLA 131 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + ++ I + G +E L P +SP G + F+ + G +++ + Sbjct: 132 YCAERKGQYDIYTIPAIGGEETQLTNTPGLDDGPEYSPDGGYIWFNSVRTGLM--QVWRM 189 Query: 422 DLNGRNETLIN 432 +G +T + Sbjct: 190 KADGSEQTQMT 200 >gi|171057547|ref|YP_001789896.1| periplasmic component of the Tol biopolymer transport system [Leptothrix cholodnii SP-6] gi|170774992|gb|ACB33131.1| periplasmic component of the Tol biopolymer transport system [Leptothrix cholodnii SP-6] Length = 296 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 17/206 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++A + + ED+ + P R+ + +S +G+R ++D Sbjct: 91 SPDGARLAISHFAHEDVSSRIYIVPLGGGVPVRVTDL-GPNYLHGWSPDGQRLAYCAERD 149 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 D+Y++ + RLT+T ++ YSPD I F S R G Q++ M +G +Q Sbjct: 150 GQYDVYTIPVHGGPETRLTDTPGLDDGPEYSPDGRHIWFNSTRSGLMQVWRMDIHGRNQT 209 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----------FAIGVMKKDGSQERLLVE 388 + +D +A+ + P SP G + + + + I ++ +G + R + + Sbjct: 210 HVIKD-DANCWFPHVSPDGQRVVYVAYDKDNVAPGDHPPDKPVEIRLVSAEGGKPRTIAQ 268 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKK 410 L +W+P R + F + Sbjct: 269 LFGGQGTLNVNSWAPDNRHIAFVSYR 294 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 81/188 (43%), Gaps = 13/188 (6%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 A + F +I AP ++ +G+R + + +++ +L S R+ ++ + Sbjct: 30 TGARTVLKEFDVVIEAPNWTRDGRRLIF----NSLGGMFAYELSSGEVTRIDTGFAVDCN 85 Query: 307 --ASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD +++ + + ++Y++ G R++ WSP G +A Sbjct: 86 NDHVLSPDGARLAISHFAHEDVSSRIYIVPLGGGVPVRVTDLGPNYLHG--WSPDGQRLA 143 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + ++ + + G E L + P +SP GR + F+ + G +++ + Sbjct: 144 YCAERDGQYDVYTIPVHGGPETRLTDTPGLDDGPEYSPDGRHIWFNSTRSGLM--QVWRM 201 Query: 422 DLNGRNET 429 D++GRN+T Sbjct: 202 DIHGRNQT 209 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 17/192 (8%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + ++ G +T L +SP+ Q++AY D VY + Sbjct: 108 SSRIYIVPLGGGVPVRVTDLGPNYLHG--WSPDGQRLAYCAERDGQ-YDVYTIPVH-GGP 163 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 R+ + + P +S +G+ + + M ++ +D+ + Sbjct: 164 ETRLTDTPGLDDGPEYSPDGRHIWFNSTRSGLMQVWRMDIHGRNQTHVIKDDANCWFPHV 223 Query: 310 SPDSSQIVFESD-----------REGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSP 356 SPD ++V+ + + ++ ++ + G + I+ + + W+P Sbjct: 224 SPDGQRVVYVAYDKDNVAPGDHPPDKPVEIRLVSAEGGKPRTIAQLFGGQGTLNVNSWAP 283 Query: 357 QGDLIAFTKFSG 368 IAF + Sbjct: 284 DNRHIAFVSYRP 295 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 13/119 (10%) Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + + + ++ + P W+ G + F G + + + + + Sbjct: 30 TGARTVLKEFDVVIEAPNWTRDGRRLIFNSLGG----MFAYELSSGEVTRIDTGFAVDCN 85 Query: 396 ---TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGF 445 SP G L S D S++Y + L G + ++ D Q + + Sbjct: 86 NDHVLSPDGARLAISHFAHEDVSSRIYIVPLGGGVPVRVTDLGPNYLHGWSPDGQRLAY 144 >gi|6119895|gb|AAF04275.1|AF181881_1 TolB [Helicobacter pylori] Length = 417 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLRTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVNTS 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + A AH ++ + + + R++ S+ + GI +L Sbjct: 112 ALVKTFDYPILSADLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLIALNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTSQEYAMGLILLDYN 400 >gi|255535417|ref|YP_003095788.1| WD40-like beta Propeller [Flavobacteriaceae bacterium 3519-10] gi|255341613|gb|ACU07726.1| WD40-like beta Propeller [Flavobacteriaceae bacterium 3519-10] Length = 741 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 33/284 (11%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 D IY +K + +S +G + + DG +I Y + + Sbjct: 63 CDQIYLLDLTKKDTSVGDLKLIS----TGDGRTTCSFFMPDGKHILYASTHEASKACPEK 118 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 P + + + +Y+ D + +++ + S +GK + + + Sbjct: 119 --PKPRTDGKYLWPVYEEFDIYIADLN-GKITRKLTDSPGYDAEAVVSPDGKYIVFTSMR 175 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR---------------- 322 ++++ +D+ ++LT L + A +S DS ++VF S R Sbjct: 176 SGDLELWRMDIDGKNLKQLTTGLGYDGGAFFSHDSKKLVFRSSRPTSEKEVKEYRELLGE 235 Query: 323 ----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIG 374 ++Y M +GSD K+++ +A++ P + P I F+ G F I Sbjct: 236 NLVAPTNMEIYTMNVDGSDLKQVTNLGKANW-SPYFHPSDRKIVFSSNHHSTRGYDFQIY 294 Query: 375 VMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK 417 + DG + +S A P +SP G+ L+FS + + Sbjct: 295 SIDTDGRNLTQITYESEFNAFPMFSPDGKQLVFSSNRQAGKAHE 338 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 105/303 (34%), Gaps = 62/303 (20%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE---DILRVYLMDTR----IDRAPKRIG 254 NIR LT D FSP+ +K+ + E ++YL+D K I Sbjct: 28 NIRKLTFGGDNAEAY--FSPDSKKLTLQVTNPEIGAQCDQIYLLDLTKKDTSVGDLKLIS 85 Query: 255 NFRSMILAPRFSSNGKRALISVQKD----------------------EAMDIYSVDLQSN 292 F +GK L + + E DIY DL Sbjct: 86 TGDGRTTCSFFMPDGKHILYASTHEASKACPEKPKPRTDGKYLWPVYEEFDIYIADLNGK 145 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T +LT++ + A SPD IVF S R G +L+ M +G + K+++ Sbjct: 146 ITRKLTDSPGYDAEAVVSPDGKYIVFTSMRSGDLELWRMDIDGKNLKQLTT-GLGYDGGA 204 Query: 353 VWSPQGDLIAFTKFSGE--------------------KFAIGVMKKDGSQERLLVEDSN- 391 +S + F I M DGS + + Sbjct: 205 FFSHDSKKLVFRSSRPTSEKEVKEYRELLGENLVAPTNMEIYTMNVDGSDLKQVTNLGKA 264 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLINT-------PAYASDPQW 442 +P + PS R ++FS G ++YSID +GRN T I P ++ D + Sbjct: 265 NWSPYFHPSDRKIVFSSNHHSTRGYDFQIYSIDTDGRNLTQITYESEFNAFPMFSPDGKQ 324 Query: 443 VGF 445 + F Sbjct: 325 LVF 327 >gi|57505319|ref|ZP_00371248.1| colicin tolerance-like protein (tolB) [Campylobacter upsaliensis RM3195] gi|315639284|ref|ZP_07894446.1| colicin tolerance family protein (tolB) [Campylobacter upsaliensis JV21] gi|57016455|gb|EAL53240.1| colicin tolerance-like protein (tolB) [Campylobacter upsaliensis RM3195] gi|315480610|gb|EFU71252.1| colicin tolerance family protein (tolB) [Campylobacter upsaliensis JV21] Length = 402 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 69/412 (16%), Positives = 154/412 (37%), Gaps = 36/412 (8%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSP-VSIAFTKFVSIDELGGKVSEVVSKDLQRSD 77 +LLV + F V N P + + +S L ++ DL+ S Sbjct: 4 ILLVFLAIFSAVWAEDPVIDVVNQGVVLPKIIVKDNSNLSDANLKRSFYNMIVNDLKVSS 63 Query: 78 VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK 137 F ++ + S +S F+ + + L L ++ + Sbjct: 64 NFEVVDEGS-------ENSNYTFEYALAKNGENL-----------SLNIKIK----AGGV 101 Query: 138 QIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 + + + + + +AH D Q + ++ + ++ + S ++ + + Sbjct: 102 EKANQDYTLNKVEQYPFLAHKGVKDSVQFLGLAPVEWMDHKILIARTNSS--KRSQIIMA 159 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 D R + + P+++ +Q + Y T D D ++ D ++A K + + Sbjct: 160 DYTLTYQRVIVDG--GLNLFPKWANEEQTMFYYTAYDHDKPTLFRFDLTNNKASKILSSG 217 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQ 315 M++A + G + L+++ + D+Y DL S +LTN I+++A++ D S+ Sbjct: 218 -GMVVASDVNKKGDKILVTMAPQDQPDVYLYDLNSKNLSKLTNYSGIDVNANFIGEDESK 276 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---EKFA 372 +VF SDR G +++ + ++ + S D + ++ F Sbjct: 277 VVFVSDRLGYPNIFIQNLGSTSAEQAVFHGRNN---SAVSTYKDFLVYSSREPKQAGVFN 333 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I +M R L + P +S G S++F + + + ++ N Sbjct: 334 IYLMSIKSDYIRQLSANGKNLFPRFSSDGGSIVFIKHLGNQSALGVIRVNAN 385 >gi|86135211|ref|ZP_01053793.1| putative TolB protein [Polaribacter sp. MED152] gi|85822074|gb|EAQ43221.1| putative TolB protein [Polaribacter sp. MED152] Length = 365 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 125/316 (39%), Gaps = 54/316 (17%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE---- 234 VS S V + + ++ ++R +T D +S + +++ + + + Sbjct: 24 VVSNSEVEVAKDSLIYPEEKYFKSLRQVTFGGDNAEAY--WSFDDKQLVFQSNYTKWNVG 81 Query: 235 --DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-------------VQKD 279 + + + + P I + F + K + + ++K+ Sbjct: 82 CDQMFLMNADENFKNSMPPMISTGKGRTTCAYFLPDNKHIIYASTHLVDEECPEVPLRKN 141 Query: 280 E--------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + DI+ DL+ N ++LTN + + + SP +IVF S R G +LY M Sbjct: 142 GKYIWPVYDSFDIFVADLEGNIVKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGDLELYTM 201 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------------------KF 371 +G+D K+I+ D+ +SP G I F + + Sbjct: 202 NIDGTDVKQIT-DELGYDGGAFFSPDGTKIIFRSSRPKTEEEIKAYKDLLAEGLVEPTEM 260 Query: 372 AIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRN- 427 + + DGS R L + N +P + PSG+ ++FS + + G LY ID++G+N Sbjct: 261 ELYICNADGSDLRQLTDLGNANWSPFFHPSGKKILFSSNFEAERGFPFNLYLIDIDGKNL 320 Query: 428 ETLINTPAYASDPQWV 443 E + + + + P + Sbjct: 321 ERVTHGETFDAFPVFS 336 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 113/292 (38%), Gaps = 54/292 (18%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGAN-----IRYLTPSRDQILFEPRFSPNQQKVAY 228 + +++F S + + + +M+ D N ++ + + F P+ + + Y Sbjct: 66 DKQLVFQSNYTKWNVGCDQMFLMNAD-ENFKNSMPPMISTGKGRTTCA-YFLPDNKHIIY 123 Query: 229 AT--------------------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 A+ + D +++ D K++ N P S Sbjct: 124 ASTHLVDEECPEVPLRKNGKYIWPVYDSFDIFVADLE-GNIVKQLTNEVGYDAEPTVSPK 182 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 G + + + + +++Y++++ +++T+ L + A +SPD ++I+F S R Sbjct: 183 GDKIVFTSTRSGDLELYTMNIDGTDVKQITDELGYDGGAFFSPDGTKIIFRSSRPKTEEE 242 Query: 326 -----------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 +LY+ ++GSD ++++ A++ P + P G I F+ Sbjct: 243 IKAYKDLLAEGLVEPTEMELYICNADGSDLRQLTDLGNANW-SPFFHPSGKKILFSSNFE 301 Query: 367 --SGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTG 415 G F + ++ DG + A P +S G+ L FS ++ G Sbjct: 302 AERGFPFNLYLIDIDGKNLERVTHGETFDAFPVFSNDGKKLAFSSNRNNGGG 353 Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R++ + + + G +ILF S +L ++D DG N+ +T Sbjct: 270 SDLRQLTD-LGNANWSPFFHPSG---KKILFSSNFEAERGFPFNLYLIDIDGKNLERVTH 325 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILR 238 + P FS + +K+A+++ + R Sbjct: 326 G-ETFDAFPVFSNDGKKLAFSSNRNNGGGR 354 >gi|118474869|ref|YP_892654.1| translocation protein TolB [Campylobacter fetus subsp. fetus 82-40] gi|118414095|gb|ABK82515.1| protein TolB [Campylobacter fetus subsp. fetus 82-40] Length = 421 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 71/425 (16%), Positives = 170/425 (40%), Gaps = 26/425 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSI--AFTKFVSIDELGGKVSEVVS 70 M+ L+ IG ++ A ++V + + A T F + + L + +++ Sbjct: 1 MRKLFLLIAFCIGL---SAADATIEVVNKGLVLPRIVVQDATTNFAN-NTLKNRFFKLMI 56 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ F +I + + + D + ++++ + EG L ++ +L Sbjct: 57 GDLKVGSSFEVI--EDYYTSSYDGDFRTNLAN--DKNPELILRYALGVEGNG-LTLKVKL 111 Query: 131 WDVKDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 + K+ F + A + +AH I +++ D+ + + +S+ G Sbjct: 112 LNAKNGSVRFEGTFSQAELAKFPFLAHKSIATIARNLNLSPIDWMDKSIIISQYTSPG-- 169 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+++ V D + + + P+++ Q Y T + +Y D + Sbjct: 170 KSNIIVADYTLTYQKVILSG--GLNIFPKWANKDQSAFYYTTYINLVPTLYKYDLATGKK 227 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K I M++A SS+G + L+++ D+ DIY D + R+T+ I+++ ++ Sbjct: 228 TK-ITQSGGMLVASDVSSDGTKVLLTMAPDDQSDIYIYDTTTKKKSRITDFKGIDVNGNF 286 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 + +++VF SDR G ++ NG +++ + + + + + ++ Sbjct: 287 VDNDTRVVFVSDRLGYPNIFATSINGGAVEQMVFHGKNNNSVSTYQ---NYVVYSSRESV 343 Query: 367 ---SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 S + F + ++ R L P +S G S++F + ++ + ++ Sbjct: 344 GDYSAKTFNLYLISTKSDYIRQLTSGGVNTYPRFSSDGGSIVFIKNAGNESAVGIIRVNE 403 Query: 424 NGRNE 428 N + Sbjct: 404 NKSFQ 408 >gi|308184867|ref|YP_003929000.1| translocation protein TolB [Helicobacter pylori SJM180] gi|308060787|gb|ADO02683.1| translocation protein TolB [Helicobacter pylori SJM180] Length = 417 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVNTS 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + A AH ++ + + + R++ S+ + GI +L Sbjct: 112 ALVKTFDYPILSADLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIRPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|301058338|ref|ZP_07199371.1| TolB amino-terminal domain protein [delta proteobacterium NaphS2] gi|300447574|gb|EFK11306.1| TolB amino-terminal domain protein [delta proteobacterium NaphS2] Length = 215 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 13/193 (6%) Query: 32 IHAFVKVATNSANYSPVSIAFTKFVSID------ELGGKVSEVVSKDLQRSDVFNLISQD 85 A + + N+ + +IA F + EL ++ VVS DL S FN + + Sbjct: 25 ATARIYIDVNAPSVQKFNIAIPDFQNQGGGCPRLELSSELPGVVSNDLDLSGYFNPLDKA 84 Query: 86 SFKQKITNP--DSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKK 143 SF + P F+DW+ +GA++L+ G G ++L VE RL+DV +QI+GK+ Sbjct: 85 SFLEGKNGPIKGKDINFKDWSVIGAELLLKGGYTCSG-NQLEVEIRLFDVFFGRQILGKR 143 Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 S +R + H +S++I + +TG +G +R+ FV + + + D DG N+ Sbjct: 144 AIGSLDDYRHLMHRLSNEIIKRLTGHEGISMTRLAFV----GTATGQREIYACDYDGRNV 199 Query: 204 RYLTPSRDQILFE 216 R LT + L Sbjct: 200 RPLTKDKSIALCP 212 >gi|255013144|ref|ZP_05285270.1| periplasmic component of the Tol biopolymer transport system [Bacteroides sp. 2_1_7] Length = 260 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 84/207 (40%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 S + +++A + ED P+ I L +S +GK+ ++ Sbjct: 53 ISADGKQIAISNGTKEDGRSRIYTLPFEGGVPRLITPLGPSYLH-GWSPDGKQLAYCAER 111 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + D+Y + +RLT ++ YSP I F S R G Q++ M+++GS+Q Sbjct: 112 NGNFDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQ 171 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G I F + + + +M +G + + LV Sbjct: 172 TQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLANKNVELRLMPAEGGEPKTLV 231 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P + F + Sbjct: 232 KLFGGQGTINVNSWAPDSKRFAFVSYR 258 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 16/235 (6%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGK 270 ++ P ++P+ + Y + ++Y + P+ I + + S++GK Sbjct: 4 LIEAPNWTPDGNWLVYNS-----GGKLYKLSPESPGEPQLINSDYATRCNNDHVISADGK 58 Query: 271 RALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + IS ++D IY++ + +T L + +SPD Q+ + ++R G + Sbjct: 59 QIAISNGTKEDGRSRIYTLPFEGGVPRLIT-PLGPSYLHGWSPDGKQLAYCAERNGNFDV 117 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV- 387 YV+ + G ++KR++ E P +SP G I F + MK DGS++ + Sbjct: 118 YVIPALGGEEKRLTT-AEGLDDGPEYSPCGQYIWFNSVRTGLMQVWRMKADGSEQTQMTF 176 Query: 388 -EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 E N P SP G+ ++F GD + + +N L PA +P+ Sbjct: 177 DETRNSWFPHISPDGKQIVFITYTKGDLEPGQHLAN---KNVELRLMPAEGGEPK 228 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 14/183 (7%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI---NISASYSPD 312 F +I AP ++ +G + + +Y + +S +L N+ + N S D Sbjct: 1 FPFLIEAPNWTPDGNWLVY----NSGGKLYKLSPESPGEPQLINSDYATRCNNDHVISAD 56 Query: 313 SSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 QI + +G+ ++Y + G + I+ + WSP G +A+ Sbjct: 57 GKQIAISNGTKEDGRSRIYTLPFEGGVPRLITPLGPSYLHG--WSPDGKQLAYCAERNGN 114 Query: 371 FAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 F + V+ G +E RL + P +SP G+ + F+ + G +++ + +G +T Sbjct: 115 FDVYVIPALGGEEKRLTTAEGLDDGPEYSPCGQYIWFNSVRTGLM--QVWRMKADGSEQT 172 Query: 430 LIN 432 + Sbjct: 173 QMT 175 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 40/135 (29%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M DG+ +T + + P SP+ +++ + TY D+ Sbjct: 160 QVWRMKADGSEQTQMTFDETRNSWFPHISPDGKQIVFITYTKGDLEP------------- 206 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF----INISA 307 G+ ++ +++ + + + L IN++ Sbjct: 207 -----------------GQHLA-----NKNVELRLMPAEGGEPKTLVKLFGGQGTINVN- 243 Query: 308 SYSPDSSQIVFESDR 322 S++PDS + F S R Sbjct: 244 SWAPDSKRFAFVSYR 258 >gi|58700237|ref|ZP_00374719.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533245|gb|EAL57762.1| tolB protein, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 226 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 20/225 (8%) Query: 20 LLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVS----IDELGGKVSEVVSKDLQR 75 L++ I F P A + V ++ + + +K EL +++V+ +L Sbjct: 7 LVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSN 66 Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKD 135 +FN+ ++ +S + W S +VT + + L + FRL+D Sbjct: 67 CGLFNV-------KRGAEAES----KSWKS---DTVVTVSLSEISGSALELSFRLFDTFT 112 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLC 194 +++++ + WRKI H +SD I+ + GEKG FN++I +++E S + Sbjct: 113 KRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIA 172 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VM++DG+NI+YLT D+ + PRFSPN + + Y +Y + + Sbjct: 173 VMNQDGSNIKYLTNG-DRFVSTPRFSPNGKGIVYISYANGKSYII 216 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 372 AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I VM +DGS + L D + P +SP+G+ +++ +G + L Sbjct: 170 KIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIIL 217 Score = 43.1 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 I ++ + + LTN + +SP+ IV+ S GK + + + Sbjct: 170 KIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKDT 223 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 S+ + ++ VM +GS+ K ++ + + P +SP G I + ++ K I + Sbjct: 163 SNYKSVRKIAVMNQDGSNIKYLT-NGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNL 220 >gi|332827955|gb|EGK00677.1| hypothetical protein HMPREF9455_02951 [Dysgonomonas gadei ATCC BAA-286] Length = 291 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 16/204 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + +A + D + PK++ + +S +GK ++ Sbjct: 84 SPDGRLMAISHRSLPDGRPTIFVLPDEGGEPKQVTPSLPSYMH-GWSPDGKMLTYCANRN 142 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 MD+Y++ + RLT + +N YSPD I F S R G Q++ M+++GS+Q Sbjct: 143 GEMDVYTISIDGTNETRLTTSEGLNDGPEYSPDGKYIWFNSVRTGLMQIWRMKTDGSEQT 202 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----------AIGVMKKDGSQERLLVE 388 +I+ D +++ + P SP G + + + I ++ G + + LV+ Sbjct: 203 QITFDDDSNSWFPHLSPDGKNVVYIAYRKGDLEPHEHLRYKHVEIRMIPATGGEPQTLVK 262 Query: 389 ----DSNLQAPTWSPSGRSLIFSR 408 +W+P + F Sbjct: 263 LFGGQGTFNVNSWAPDSKRFAFVS 286 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 16/247 (6%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM- 259 A R + ++ P ++P+ + + Y + +Y + P+ I + Sbjct: 22 AGRRTIVKEFPYLIEAPDWTPDGKHLIYNSEGL-----IYKLPADFFGEPELIDTGFATR 76 Query: 260 -ILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 S +G+ IS + D I+ + + +++T +L + +SPD + Sbjct: 77 CNNDHLVSPDGRLMAISHRSLPDGRPTIFVLPDEGGEPKQVTPSL-PSYMHGWSPDGKML 135 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + ++R G+ +Y + +G+++ R++ E P +SP G I F I M Sbjct: 136 TYCANRNGEMDVYTISIDGTNETRLTT-SEGLNDGPEYSPDGKYIWFNSVRTGLMQIWRM 194 Query: 377 KKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 K DGS++ + +DSN P SP G+++++ + GD + L ++ + P Sbjct: 195 KTDGSEQTQITFDDDSNSWFPHLSPDGKNVVYIAYRKGDLEPHEH---LRYKHVEIRMIP 251 Query: 435 AYASDPQ 441 A +PQ Sbjct: 252 ATGGEPQ 258 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 16/221 (7%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + + + + + F +I AP ++ +GK + + IY + Sbjct: 7 EPSKVTSILEIYDITAGRRTIVKEFPYLIEAPDWTPDGKHLIY----NSEGLIYKLPADF 62 Query: 292 NATERLTNTLFI---NISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKE 346 L +T F N SPD + S +G+ ++V+ G + K+++ Sbjct: 63 FGEPELIDTGFATRCNNDHLVSPDGRLMAISHRSLPDGRPTIFVLPDEGGEPKQVTPSLP 122 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLI 405 + WSP G ++ + + + + DG+ E RL + P +SP G+ + Sbjct: 123 SYMHG--WSPDGKMLTYCANRNGEMDVYTISIDGTNETRLTTSEGLNDGPEYSPDGKYIW 180 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 F+ + G +++ + +G +T I ++ W + Sbjct: 181 FNSVRTGLM--QIWRMKTDGSEQTQITFDDDSN--SWFPHL 217 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 19/208 (9%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + R++ +S + + ++ V+ +G + +TPS + +SP+ + + Y + Sbjct: 86 DGRLMAISHRSLPD-GRPTIFVLPDEGGEPKQVTPSLPSYMHG--WSPDGKMLTYCANRN 142 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + + VY + R+ + P +S +GK + + M I+ + + Sbjct: 143 GE-MDVYTISID-GTNETRLTTSEGLNDGPEYSPDGKYIWFNSVRTGLMQIWRMKTDGSE 200 Query: 294 TERLT-NTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQSNGSDQKRI 341 ++T + + SPD +V+ + R+G ++ ++ + G + + + Sbjct: 201 QTQITFDDDSNSWFPHLSPDGKNVVYIAYRKGDLEPHEHLRYKHVEIRMIPATGGEPQTL 260 Query: 342 --SQDKEASYFDPVWSPQGDLIAFTKFS 367 + ++ W+P AF FS Sbjct: 261 VKLFGGQGTFNVNSWAPDSKRFAFVSFS 288 >gi|168701247|ref|ZP_02733524.1| tolB protein [Gemmata obscuriglobus UQM 2246] Length = 337 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 125/314 (39%), Gaps = 50/314 (15%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R L V S +G + L V GA R EP +SP+ +++A+ + Sbjct: 29 PRGLLVVTSNTNGNWEIYL-VQASTGAARR--LTDNTASDTEPVWSPDGKRIAFTSDRAG 85 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + V+LM+ P+++ R+S +GKR + +++ + +V++ + Sbjct: 86 EP-DVWLMNAD-GTEPEQLTKKCGGCTGLRWSPDGKRIAFTGRQNGIEQVMAVEVATGKV 143 Query: 295 ERLTNTLFINISASYSPDSSQIVF------------------------------------ 318 RL + + AS+SPD ++ F Sbjct: 144 SRLIDGTVLCRHASWSPDGKKLSFGYFPGRYAIYTATAEGKELAELTDKKGGLDAAWSPN 203 Query: 319 -------ESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEK 370 D + Q++V+ ++G+++K++++ P+WSP G+ I+F + K Sbjct: 204 GQQLAFMTLDADRDWQVFVIGADGNNKKQLTKSANNYGARYPLWSPDGNFISFEEIVDGK 263 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + VM+ DGS +++ WSP G+SL ++R + G L+ D +G N Sbjct: 264 LQVAVMRADGSDPKVITSKHEHTLTRWSPDGKSLSYARSEKGQL-PALWVSDPDGGNAKE 322 Query: 431 INTPAYASDPQWVG 444 + +W Sbjct: 323 LLGGVGTWAAEWKP 336 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 11/98 (11%) Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDT 414 P+G L+ T + + I +++ R L + ++ P WSP G+ + F+ + G+ Sbjct: 29 PRG-LLVVTSNTNGNWEIYLVQASTGAARRLTDNTASDTEPVWSPDGKRIAFTSDRAGE- 86 Query: 415 GSKLYSIDLNGRNETLI-------NTPAYASDPQWVGF 445 ++ ++ +G + ++ D + + F Sbjct: 87 -PDVWLMNADGTEPEQLTKKCGGCTGLRWSPDGKRIAF 123 >gi|108563490|ref|YP_627806.1| translocation protein TolB [Helicobacter pylori HPAG1] gi|118574582|sp|Q1CSE0|TOLB_HELPH RecName: Full=Protein tolB; Flags: Precursor gi|107837263|gb|ABF85132.1| TonB-independent protein-uptake protein [Helicobacter pylori HPAG1] Length = 417 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 65/416 (15%), Positives = 152/416 (36%), Gaps = 29/416 (6%) Query: 19 LLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDEL--GGKVSEVVSKDLQRS 76 L L LIG + + + + ++ + ++ K+ EV++ DL+ S Sbjct: 4 LWLFLIGTIGLFATDKTLDIIKT---IQKLPKIEVRYSTDNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYTELKDKKVHLVALVSVAVENGNKIS-RLKLYDVNTS 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + A AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLVKTFDYPILSADLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|208435024|ref|YP_002266690.1| TonB-independent protein-uptake protein [Helicobacter pylori G27] gi|208432953|gb|ACI27824.1| TonB-independent protein-uptake protein [Helicobacter pylori G27] Length = 417 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 151/416 (36%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + Q++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYAELKDKKFQLVALVSVAVENGNKIS-RLKLYDVNTS 111 Query: 137 KQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + S + AH ++ + + + R++ S+ + GI +L Sbjct: 112 ALVKTFDYPILSTDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|15965598|ref|NP_385951.1| hypothetical protein SMc00162 [Sinorhizobium meliloti 1021] gi|307302718|ref|ZP_07582474.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307318566|ref|ZP_07598000.1| putative TolB-like protein [Sinorhizobium meliloti AK83] gi|15074779|emb|CAC46424.1| Probable periplasmic component of the Tol biopolymer transport system [Sinorhizobium meliloti 1021] gi|306895906|gb|EFN26658.1| putative TolB-like protein [Sinorhizobium meliloti AK83] gi|306903082|gb|EFN33673.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 275 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 16/236 (6%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 L + DG++ + + SP+ + + + +YL+ Sbjct: 40 NGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEG 99 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 N S +S +G+ +D+ DIY++ + RLT N Sbjct: 100 GTPRLVTRNLPSYWHG--WSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDG 157 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +S D I F S R G+ Q++ ++ +G D +RI+ +F P SP G + + Sbjct: 158 PDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWF-PHPSPDGRHLLVLSY 216 Query: 367 SGEKF--------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKK 410 G+ F + +M DG R+L+E + P WSPSG + F R + Sbjct: 217 DGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYE 272 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 20/253 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAP 263 + ++++ P +SP+ + + R+Y + + F Sbjct: 16 RVVWQTERLVEAPNWSPDGKFLI-----INGDGRLYRLGFDGSDPTEIDTGFARHCNNDH 70 Query: 264 RFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 S +G +IS + + + IY + + +T L + +SPD + + R Sbjct: 71 GISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNL-PSYWHGWSPDGRMLAYCGIR 129 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +Y + +G +++R++Q + + P WS G+ I F + I ++ DG Sbjct: 130 DQVFDIYTIPVDGGEERRLTQGQGRND-GPDWSADGEWIYFNSSRTGRMQIWRVRPDGKD 188 Query: 383 ERLLVED-SNLQAPTWSPSGRSLIFSRKKDG------DTGSKLYSIDLNGRNETLI---- 431 + + + P SP GR L+ D +L +D +G N ++ Sbjct: 189 VQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELF 248 Query: 432 NTPAYASDPQWVG 444 + P W Sbjct: 249 GGQGTVNVPNWSP 261 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 82/203 (40%), Gaps = 17/203 (8%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI--N 304 + + ++ AP +S +GK +I + +Y + + + N Sbjct: 12 TGETRVVWQTERLVEAPNWSPDGKFLII----NGDGRLYRLGFDGSDPTEIDTGFARHCN 67 Query: 305 ISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD S +V SD+ G +Y++ + G + ++++ + + WSP G ++A Sbjct: 68 NDHGISPDGSTLV-ISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHG--WSPDGRMLA 124 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + F I + DG +ER L + P WS G + F+ + G +++ + Sbjct: 125 YCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRM--QIWRV 182 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 +G++ I + W Sbjct: 183 RPDGKDVQRIT---DSPYGDWFP 202 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 85/201 (42%), Gaps = 14/201 (6%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + S + +++ ++ +G R +T R+ + +SP+ + +AY D + + Sbjct: 79 LVISDKTEFGSSAIYLLPAEGGTPRLVT--RNLPSYWHGWSPDGRMLAYCGIRD-QVFDI 135 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y + +R+ + P +S++G+ + + M I+ V +R+T+ Sbjct: 136 YTIPVD-GGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITD 194 Query: 300 TLFINISASYSPDSSQI--------VFESDREGKEQLYVMQSNGSDQKRIS--QDKEASY 349 + + + SPD + VF+ R+ +L +M +G + + + + + Sbjct: 195 SPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTV 254 Query: 350 FDPVWSPQGDLIAFTKFSGEK 370 P WSP G AF ++ E+ Sbjct: 255 NVPNWSPSGTAFAFVRYEPEE 275 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQD 344 D+ + T + T + + ++SPD ++ G +LY + +GSD I + Sbjct: 7 IFDIATGETRVVWQTERLVEAPNWSPDGKFLI----INGDGRLYRLGFDGSDPTEIDTGF 62 Query: 345 KEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 D SP G + + K AI ++ +G RL+ + WSP GR Sbjct: 63 ARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRM 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + + D +Y+I ++G E + P +++D +W+ F Sbjct: 123 LAYCGIR--DQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYF 169 >gi|332665861|ref|YP_004448649.1| hypothetical protein Halhy_3928 [Haliscomenobacter hydrossis DSM 1100] gi|332334675|gb|AEE51776.1| hypothetical protein Halhy_3928 [Haliscomenobacter hydrossis DSM 1100] Length = 527 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 220 SPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQ 277 S N +K+A + + E I ++++ P+ I +S +GK+ + + Q Sbjct: 320 SFNGKKLALSNHMGETRISTLFILPVTGSDQPEAITAPESGHSYLHGWSPDGKKLIFTGQ 379 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +++ DI+SVD+ + LTNTL ++ S ++PD I F S R G +L+ M+ +GS Sbjct: 380 RNKQYDIWSVDIATKKETPLTNTLTLDDSPEFTPDGKWIYFNSVRTGTMKLWRMKPDGSQ 439 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIGVMKKDGSQERLLV 387 Q++++ D E + + P SP G I + + E K + +M G R + Sbjct: 440 QEQVTFD-EYNDWFPHISPDGKWIVYLSYPKEINPTDHPWYQKIYLRLMPAAGGIPRNIA 498 Query: 388 ----EDSNLQAPTWSPSGRSLIFSRK 409 + P+WSP + + F Sbjct: 499 YVYGGQGTINVPSWSPDSKRIAFVSN 524 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 87/208 (41%), Gaps = 16/208 (7%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATY 231 FN + L +S + + ++L ++ G++ +T + +SP+ +K+ + Sbjct: 321 FNGKKLALS-NHMGETRISTLFILPVTGSDQPEAITAPESGHSYLHGWSPDGKKLIFTGQ 379 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 ++ ++ +D + + N ++ +P F+ +GK + + M ++ + Sbjct: 380 RNKQ-YDIWSVDIAT-KKETPLTNTLTLDDSPEFTPDGKWIYFNSVRTGTMKLWRMKPDG 437 Query: 292 NATERLTNTLFINISASYSPDSSQIVFES--------DREGKEQLYV--MQSNGSDQKRI 341 + E++T + + SPD IV+ S D +++Y+ M + G + I Sbjct: 438 SQQEQVTFDEYNDWFPHISPDGKWIVYLSYPKEINPTDHPWYQKIYLRLMPAAGGIPRNI 497 Query: 342 SQ--DKEASYFDPVWSPQGDLIAFTKFS 367 + + + P WSP IAF + Sbjct: 498 AYVYGGQGTINVPSWSPDSKRIAFVSNT 525 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 108/260 (41%), Gaps = 26/260 (10%) Query: 205 YLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +L D+++ + FS + + + Y D + +MD K + + + + Sbjct: 214 FLCSHEDKVVEKAVFSNVRITIPAAPDFRPYRDYLGSHIEVMDVHTG-LRKILHSAPNSL 272 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS--ASYSPDSSQIVF 318 AP ++ +GK + + +Y+ DL SN L IN + S + ++ Sbjct: 273 QAPNWTKDGKTLIY----NSEGKMYNFDLASNTVSTLNTGFAINNNNDHVLSFNGKKLA- 327 Query: 319 ESDREGKEQL---YVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 S+ G+ ++ +++ GSDQ I+ + + WSP G + FT +++ I Sbjct: 328 LSNHMGETRISTLFILPVTGSDQPEAITAPESGHSYLHGWSPDGKKLIFTGQRNKQYDIW 387 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN- 432 + +E L + +P ++P G+ + F+ + G KL+ + +G + + Sbjct: 388 SVDIATKKETPLTNTLTLDDSPEFTPDGKWIYFNSVRTGTM--KLWRMKPDGSQQEQVTF 445 Query: 433 ------TPAYASDPQWVGFM 446 P + D +W+ ++ Sbjct: 446 DEYNDWFPHISPDGKWIVYL 465 >gi|154494285|ref|ZP_02033605.1| hypothetical protein PARMER_03636 [Parabacteroides merdae ATCC 43184] gi|154085969|gb|EDN85014.1| hypothetical protein PARMER_03636 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + + +++A + ED P+ I L +S +G++ + Sbjct: 90 IAADGKQIAISHGTKEDGKSRIYTLPMQGGTPRLITPIAPSYLH-GWSPDGRQLAYCADR 148 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 DIY + ++ +LT ++ YSP I F S R G Q++ M+ +GS+Q Sbjct: 149 KGNYDIYVIPVEGGEERQLTTAEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKDGSEQ 208 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G + F + + +M G + + LV Sbjct: 209 TQMTFDETRNSWFPHVSPDGKSVIFITYYKGDLEPGQHLPNKNVELRIMPATGGKPKTLV 268 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P + + F + Sbjct: 269 KLFGGQGTINVNSWAPDSKHIAFVSYR 295 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 32/268 (11%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--IL 261 R + + P ++P+ Q + Y + ++Y + P+ I + Sbjct: 32 RTVVKEFPYRVEAPNWTPDGQWLVYNS-----GGKLYKLSPDSPGEPEMINTGFATRCNN 86 Query: 262 APRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +++GK+ IS ++D IY++ +Q +T + + +SPD Q+ + Sbjct: 87 DHVIAADGKQIAISHGTKEDGKSRIYTLPMQGGTPRLIT-PIAPSYLHGWSPDGRQLAYC 145 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +DR+G +YV+ G ++++++ E P +SP G+ I F + MKKD Sbjct: 146 ADRKGNYDIYVIPVEGGEERQLTT-AEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKD 204 Query: 380 GSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGD---------TGSKLYSIDLN-GRN 427 GS++ + E N P SP G+S+IF GD +L + G+ Sbjct: 205 GSEQTQMTFDETRNSWFPHVSPDGKSVIFITYYKGDLEPGQHLPNKNVELRIMPATGGKP 264 Query: 428 ETL---------INTPAYASDPQWVGFM 446 +TL IN ++A D + + F+ Sbjct: 265 KTLVKLFGGQGTINVNSWAPDSKHIAFV 292 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 70/209 (33%), Gaps = 50/209 (23%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------- 321 + Q D + +D+ + + + + +++PD +V+ S Sbjct: 8 TSLASAQQNDVTSILEVLDVTNGRRTVVKEFPYRVEAPNWTPDGQWLVYNSGGKLYKLSP 67 Query: 322 -------------------------------------REGKEQLYVMQSNGSDQKRISQD 344 +GK ++Y + G + I+ Sbjct: 68 DSPGEPEMINTGFATRCNNDHVIAADGKQIAISHGTKEDGKSRIYTLPMQGGTPRLITPI 127 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRS 403 A + WSP G +A+ + I V+ +G +ER L + P +SP G Sbjct: 128 --APSYLHGWSPDGRQLAYCADRKGNYDIYVIPVEGGEERQLTTAEGLDDGPEYSPCGEY 185 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + F+ + G +++ + +G +T + Sbjct: 186 IWFNSVRTGLM--QVWRMKKDGSEQTQMT 212 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 12/99 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI------------LRV 239 + M +DG+ +T + + P SP+ + V + TY D+ LR+ Sbjct: 197 QVWRMKKDGSEQTQMTFDETRNSWFPHVSPDGKSVIFITYYKGDLEPGQHLPNKNVELRI 256 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + ++ + I ++ + K + Sbjct: 257 MPATGGKPKTLVKLFGGQGTINVNSWAPDSKHIAFVSYR 295 >gi|116625879|ref|YP_828035.1| transcriptional regulatory protein-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116229041|gb|ABJ87750.1| transcriptional regulatory protein-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 370 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 106/260 (40%), Gaps = 20/260 (7%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V+ G L+ D+ L + P+ +++ +++ + + + P+ Sbjct: 3 ELHVVPVGGGESNRLSAG-DRRLSGLAWMPDGREIVFSS--RRGMPQQLWNVSASGGTPR 59 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL------QSNATERLTNTLFINI 305 + + P S G R +I+ +DL S +L + + + Sbjct: 60 ALPLVGEGTVWPAISRTGHRLAYVRS-TFDTNIWRLDLPREPNSSSGHPLKLIASTWRDN 118 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + YSPD +++ F SDR G L+V ++GS +++ + + P WSP G IAF Sbjct: 119 NPQYSPDGTKVAFVSDRAGSLDLWVTNADGSSPFQLT--SQGAQSTPRWSPDGRRIAFAS 176 Query: 366 FSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F+ I V+ +G + + +N +P WS GR + F+ + G ++++ Sbjct: 177 FANSNENIFVIDAEGGATKPITTGPANHNSPCWSSDGRWIYFTSNRTGK--AEIWRAPAE 234 Query: 425 GRNETLINTPAYASDPQWVG 444 G +E+ + W Sbjct: 235 GGSESQMTHQGG-----WAP 249 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 99/242 (40%), Gaps = 8/242 (3%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ +V + + I + L + + P++SP+ KVA+ + Sbjct: 79 RLAYVRSTFDTNIWRLDLPREPNSSSGHPLKLIASTWRDNNPQYSPDGTKVAFVSDRAG- 137 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 + L T D + + PR+S +G+R + + +I+ +D + AT+ Sbjct: 138 --SLDLWVTNADGSSPFQLTSQGAQSTPRWSPDGRRIAFASFANSNENIFVIDAEGGATK 195 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +T + S +S D I F S+R GK +++ + G + +++ + P S Sbjct: 196 PITTGPANHNSPCWSSDGRWIYFTSNRTGKAEIWRAPAEGGSESQMTHQGG---WAPQES 252 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDT 414 P G +I + K E AI + +G E ++E + + W P + F ++ + Sbjct: 253 PDGKMIYYQKQFSET-AIWKIPPEGGVESPVLESATVANLYLWQPFNDDIYFVQRVRNSS 311 Query: 415 GS 416 S Sbjct: 312 IS 313 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 15/211 (7%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R+ + + +G+ + S ++ +++V L + Sbjct: 11 GGESNRLSAGDRRLSGLAWMPDGREIVFSSRRGMPQQLWNVSASGGTPRALPLVGEGTVW 70 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQS-----NGSDQKRISQDKEASYFDPVWSPQGDLI 361 + S ++ + ++ + + S +P +SP G + Sbjct: 71 PAISRTGHRLAYVRSTF-DTNIWRLDLPREPNSSSGHPLKLIASTWRDNNPQYSPDGTKV 129 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 AF + V DGS L P WSP GR + F+ + + ++ I Sbjct: 130 AFVSDRAGSLDLWVTNADGSSPFQLTSQGAQSTPRWSPDGRRIAFASFAN--SNENIFVI 187 Query: 422 DLNGRNETLINT-------PAYASDPQWVGF 445 D G I T P ++SD +W+ F Sbjct: 188 DAEGGATKPITTGPANHNSPCWSSDGRWIYF 218 >gi|57168719|ref|ZP_00367851.1| colicin tolerance-like protein (tolB) [Campylobacter coli RM2228] gi|57020000|gb|EAL56680.1| colicin tolerance-like protein (tolB) [Campylobacter coli RM2228] Length = 345 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 120/296 (40%), Gaps = 13/296 (4%) Query: 134 KDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + + +S + +AH ++ ++ + ++ + S K+ Sbjct: 41 AGGLEKSSQTYALNSVEQYPFLAHKSVKASVNALGLAPVEWMDHKILIARNSSS--KKSQ 98 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D R ++A K Sbjct: 99 IIMADYTLTYQKVIIDG--GLNLFPKWGNKEQSIFYYTAYDHDRPTLYRYDLRTNKASKI 156 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL S +LTN I+++ ++ Sbjct: 157 LASG-GMVVASDVSLDGSKLLVTMAPKDQPDVYLYDLNSKNLTQLTNYSGIDVNGNFIGV 215 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S+ VF SDR G +++ N ++ + + S D + ++ + Sbjct: 216 DDSKFVFVSDRLGYPNIFIQNLNNGSAEQAVFHGKNN---SAVSTYKDFLVYSSREPNQV 272 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + + R + P +S G S++F + + + ++ N Sbjct: 273 GVFNIYLMSINSTGIRQFTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 328 >gi|110637833|ref|YP_678040.1| tol biopolymer transport system, periplasmic protein [Cytophaga hutchinsonii ATCC 33406] gi|110280514|gb|ABG58700.1| tol biopolymer transport system, periplasmic protein [Cytophaga hutchinsonii ATCC 33406] Length = 313 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 86/204 (42%), Gaps = 14/204 (6%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ +++ + ++ E + PK I +S +G ++ Sbjct: 109 ISPDNKQLVVSHHEKESGKSMIYTMPIGGGEPKLITPNAPSYWH-GWSPDGNTLAYCAER 167 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + DIY++ +RLT+ ++ Y+ D + I F S R GK +++ M+ +GS+Q Sbjct: 168 NGEFDIYTIPANGGTEQRLTDAAGLDDGPDYTADGTYIYFNSVRTGKMKIWRMKPDGSEQ 227 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVE-- 388 ++++ D +F SP G I F + + + + +M G + R++ + Sbjct: 228 EQVTFDDYNDWFA-HPSPDGKYIVFVSYEPEVEGHPANKNVTLRLMPMQGGEPRVIAKLF 286 Query: 389 --DSNLQAPTWSPSGRSLIFSRKK 410 + P+WSP + F K Sbjct: 287 GGQGTINVPSWSPDSKRFAFVSYK 310 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 14/209 (6%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 + G V K+ + M G + +TP + + +SP+ +A Sbjct: 105 NDHGISPDNKQLVVSHHEKESGKSMIYTMPIGGGEPKLITP--NAPSYWHGWSPDGNTLA 162 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y + + +Y + +R+ + + P ++++G + + M I+ + Sbjct: 163 YCAERNGE-FDIYTIPAN-GGTEQRLTDAAGLDDGPDYTADGTYIYFNSVRTGKMKIWRM 220 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDR---EGKE-----QLYVMQSNGSDQK 339 + E++T + + A SPD IVF S EG L +M G + + Sbjct: 221 KPDGSEQEQVTFDDYNDWFAHPSPDGKYIVFVSYEPEVEGHPANKNVTLRLMPMQGGEPR 280 Query: 340 RIS--QDKEASYFDPVWSPQGDLIAFTKF 366 I+ + + P WSP AF + Sbjct: 281 VIAKLFGGQGTINVPSWSPDSKRFAFVSY 309 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 22/213 (10%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI--N 304 + I + AP +S + L + +IY + ++ N Sbjct: 49 SGTRQIIYQADENVEAPNWSRSDSFLLF----NMKGEIYRIPTTGGTPVKVNTGFATHCN 104 Query: 305 ISASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SPD+ Q+V S GK +Y M G + K I+ + + + WSP G+ + Sbjct: 105 NDHGISPDNKQLV-VSHHEKESGKSMIYTMPIGGGEPKLITPNAPSYWHG--WSPDGNTL 161 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 A+ +F I + +G E+ L + P ++ G + F+ + G K++ Sbjct: 162 AYCAERNGEFDIYTIPANGGTEQRLTDAAGLDDGPDYTADGTYIYFNSVRTGKM--KIWR 219 Query: 421 IDLNGRNETLINTPAY-------ASDPQWVGFM 446 + +G + + Y + D +++ F+ Sbjct: 220 MKPDGSEQEQVTFDDYNDWFAHPSPDGKYIVFV 252 Score = 36.5 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 160 DDIYQSITGEKGDFNSRILFVSES----VVSGIIKNSLCVMDRDGANIRYL--TPSRDQI 213 DD D I+FVS +L +M G R + Sbjct: 233 DDYNDWFAHPSPDGK-YIVFVSYEPEVEGHPANKNVTLRLMPMQGGEPRVIAKLFGGQGT 291 Query: 214 LFEPRFSPNQQKVAYATY 231 + P +SP+ ++ A+ +Y Sbjct: 292 INVPSWSPDSKRFAFVSY 309 >gi|320106330|ref|YP_004181920.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319924851|gb|ADV81926.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 760 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 124/315 (39%), Gaps = 53/315 (16%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT-PSRDQILFEPRFSPNQQK 225 TG + + L VS+ SG L D + + LT PS D+ P S + + Sbjct: 326 TGPSWSSDGKGLIVSDVAPSGRG-MGLYRFDLNTHELHSLTNPSSDERDLNPTLSSDGKW 384 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AYA + D V++ +D +R+ + + + +S+ + + S + A ++ Sbjct: 385 LAYARFSSYDSSDVFIRSL-LDGRERRLTSDHTDVQGLAWSAGNREIVFSSNRGGAYGLW 443 Query: 286 SVDLQSNATERL---------------------------------------TNTLFINIS 306 ++ L + T+ ++++ Sbjct: 444 TIGLDGGNPSPISATGESAIQPAISRDGQFLVYADFTLRSEILKIGVSQAGTSVPPVSVA 503 Query: 307 AS--------YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 S +SPD S+I F SDR GK +L+V ++G + +++ S P WSP G Sbjct: 504 PSIRSSHSAQFSPDGSRIAFVSDRSGKWELWVSSADGKEASQLTNFDTGSVGSPRWSPDG 563 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSK 417 IAF + AI V+ DG R L + P WS G+ + F + G + Sbjct: 564 LSIAFDARPNGRSAIFVISPDGQGLRNLSPKGQEEKQPAWSSDGKWIYFDSNRAGSM--Q 621 Query: 418 LYSIDLNGRNETLIN 432 L+ + +G + T ++ Sbjct: 622 LWKMTTSGSDATSVS 636 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/420 (17%), Positives = 131/420 (31%), Gaps = 129/420 (30%) Query: 145 FSSPASWRKIAH-----TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 +P WR +A T + YQ G + I +G S+ V+ Sbjct: 203 TRTPDHWRSVARIIPLTTFLGESYQPNVSPDGKSVAFIW------NNGGSTYSVYVVRPG 256 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATY-----------------------DDEDI 236 G +R + P +SP+ +A+ + Sbjct: 257 GKPLR--VTAGPGTDIHPVWSPDGNLIAFLRVTSSGSQVRVVSFPGGSENALFALRNGRP 314 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILA---------------------------------- 262 L+ R D P + + +I++ Sbjct: 315 WSEDLLGIRNDTGPSWSSDGKGLIVSDVAPSGRGMGLYRFDLNTHELHSLTNPSSDERDL 374 Query: 263 -PRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P SS+GK + ++ D++ L RLT+ ++S + +IVF S Sbjct: 375 NPTLSSDGKWLAYARFSSYDSSDVFIRSLLDGRERRLTSDHTDVQGLAWSAGNREIVFSS 434 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKE---------------------------------- 346 +R G L+ + +G + IS E Sbjct: 435 NRGGAYGLWTIGLDGGNPSPISATGESAIQPAISRDGQFLVYADFTLRSEILKIGVSQAG 494 Query: 347 ------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNL 392 S +SP G IAF K+ + V DG + L + ++ Sbjct: 495 TSVPPVSVAPSIRSSHSAQFSPDGSRIAFVSDRSGKWELWVSSADGKEASQLTNFDTGSV 554 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 +P WSP G S+ F + +G S ++ I +G+ ++ PA++SD +W+ F Sbjct: 555 GSPRWSPDGLSIAFDARPNGR--SAIFVISPDGQGLRNLSPKGQEEKQPAWSSDGKWIYF 612 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 98/258 (37%), Gaps = 30/258 (11%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 ++P SP+ + VA+ + VY+ R P R+ + P +S +G Sbjct: 226 YQPNVSPDGKSVAFIWNNGGSTYSVYV--VRPGGKPLRVTAGPGTDIHPVWSPDGNLIAF 283 Query: 275 SVQKDEAMDIYSVDLQSNATERLTN------------TLFINISASYSPDSSQIVFESD- 321 + V + L + + S+S D ++ SD Sbjct: 284 LRVTSSGSQVRVVSFPGGSENALFALRNGRPWSEDLLGIRNDTGPSWSSDGKGLI-VSDV 342 Query: 322 --REGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMK 377 LY N + ++ + +P S G +A+ +FS + + + Sbjct: 343 APSGRGMGLYRFDLNTHELHSLTNPSSDERDLNPTLSSDGKWLAYARFSSYDSSDVFIRS 402 Query: 378 -KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 DG + RL + +++Q WS R ++FS + G G L++I L+G N + I+ Sbjct: 403 LLDGRERRLTSDHTDVQGLAWSAGNREIVFSSNRGGAYG--LWTIGLDGGNPSPISATGE 460 Query: 433 ---TPAYASDPQWVGFMD 447 PA + D Q++ + D Sbjct: 461 SAIQPAISRDGQFLVYAD 478 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 22/214 (10%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQ 277 FSP+ ++A+ + + + + ++ NF + +PR+S +G + Sbjct: 514 FSPDGSRIAFVSDRSGKWE--LWVSSADGKEASQLTNFDTGSVGSPRWSPDGLSIAFDAR 571 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + I+ + L+ ++S D I F+S+R G QL+ M ++GSD Sbjct: 572 PNGRSAIFVISPDGQGLRNLSPKGQEEKQPAWSSDGKWIYFDSNRAGSMQLWKMTTSGSD 631 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +SQ + D +P G I +T + + M G + L+ + Sbjct: 632 ATSVSQF---ALTDAHIAPDGKSIFYTNGTEG---LWQMPLSGGSPVQI---PGLEHCRF 682 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 GR +++ G +Y +++ G +I Sbjct: 683 ---GR--LWTISDGG-----IYYVNIRGDRSKVI 706 >gi|332883942|gb|EGK04222.1| hypothetical protein HMPREF9456_01250 [Dysgonomonas mossii DSM 22836] Length = 306 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 16/206 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + +++A + ED P+ I L +S +G ++ Sbjct: 98 SFDGKQIAISHGTKEDGQSRIYTLPIGGGDPQLITPLAPSYLH-GWSPDGLYLTYCAERK 156 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + D+YS+ + +RLTN+ ++ YSPD + I F S R G Q++ M+ +G+ Q Sbjct: 157 DNYDVYSIPAKGGVEKRLTNSDGLDDGPEYSPDGNYIWFNSVRTGLMQIWRMKIDGTKQT 216 Query: 340 RISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLVE 388 +++ D+ + + P SP G L+ F + + +M +G + + L + Sbjct: 217 QMTFDETRNSWFPHISPNGQLVVFIAYYKGDLKPDEHLPNKNVELRIMPTNGGEPKTLTK 276 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKK 410 + +WSP + + F + Sbjct: 277 LFGGQGTINVNSWSPDSKYIAFVSYR 302 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 32/269 (11%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMI 260 R ++ P ++ + Q + Y + +++ + P+ I G + Sbjct: 38 ERTRVKEFSYLIEAPNWTYDGQWLIYNS-----GGKLWKLSPTTPAEPEEIYTGFATNCN 92 Query: 261 LAPRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S +GK+ IS ++D IY++ + +L L + +SPD + + Sbjct: 93 NDHVLSFDGKQIAISHGTKEDGQSRIYTLPIGGGDP-QLITPLAPSYLHGWSPDGLYLTY 151 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++R+ +Y + + G +KR++ + + P +SP G+ I F I MK Sbjct: 152 CAERKDNYDVYSIPAKGGVEKRLT-NSDGLDDGPEYSPDGNYIWFNSVRTGLMQIWRMKI 210 Query: 379 DGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGD---------TGSKLYSIDLN-GR 426 DG+++ + E N P SP+G+ ++F GD +L + N G Sbjct: 211 DGTKQTQMTFDETRNSWFPHISPNGQLVVFIAYYKGDLKPDEHLPNKNVELRIMPTNGGE 270 Query: 427 NETL---------INTPAYASDPQWVGFM 446 +TL IN +++ D +++ F+ Sbjct: 271 PKTLTKLFGGQGTINVNSWSPDSKYIAFV 299 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 78/206 (37%), Gaps = 14/206 (6%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS- 291 + + R+ F +I AP ++ +G+ + + ++ + + Sbjct: 22 QNKTTSILEILNIETGERTRVKEFSYLIEAPNWTYDGQWLIY----NSGGKLWKLSPTTP 77 Query: 292 NATERLTNTLFINIS--ASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEA 347 E + N + S D QI + +G+ ++Y + G D + I+ A Sbjct: 78 AEPEEIYTGFATNCNNDHVLSFDGKQIAISHGTKEDGQSRIYTLPIGGGDPQLITPL--A 135 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + WSP G + + + + + + G E+ L D P +SP G + F Sbjct: 136 PSYLHGWSPDGLYLTYCAERKDNYDVYSIPAKGGVEKRLTNSDGLDDGPEYSPDGNYIWF 195 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLIN 432 + + G +++ + ++G +T + Sbjct: 196 NSVRTGLM--QIWRMKIDGTKQTQMT 219 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 12/99 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI------------LRV 239 + M DG +T + + P SPN Q V + Y D+ LR+ Sbjct: 204 QIWRMKIDGTKQTQMTFDETRNSWFPHISPNGQLVVFIAYYKGDLKPDEHLPNKNVELRI 263 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + + ++ + I +S + K + Sbjct: 264 MPTNGGEPKTLTKLFGGQGTINVNSWSPDSKYIAFVSYR 302 >gi|86153862|ref|ZP_01072065.1| protein TolB [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842823|gb|EAQ60035.1| protein TolB [Campylobacter jejuni subsp. jejuni HB93-13] Length = 333 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 119/296 (40%), Gaps = 13/296 (4%) Query: 134 KDRKQIIGKKFF-SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + + + + +AH ++ D+ + ++ + S K+ Sbjct: 29 AGGSDKSEQTYTLNGLEQYPFLAHKSVKASVNTLGLAPVDWMDHKILIARNSSS--KKSQ 86 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + D + + + P++ +Q + Y T D D +Y D ++A K Sbjct: 87 IIMADYTLTYQKVIVDG--GLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKI 144 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SP 311 + + M++A S +G + L+++ + D+Y DL + +LTN I+++ ++ Sbjct: 145 LSSG-GMVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGS 203 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D S++VF SDR G +++ N + +++ + S D + ++ + Sbjct: 204 DDSKVVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNN---SAVSTYKDFLVYSSREPNQA 260 Query: 371 --FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F I +M + R L + P +S G S++F + + + ++ N Sbjct: 261 GVFNIYLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNAN 316 >gi|126178726|ref|YP_001046691.1| peptidase S9B dipeptidylpeptidase IV subunit [Methanoculleus marisnigri JR1] gi|125861520|gb|ABN56709.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Methanoculleus marisnigri JR1] Length = 395 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 68/298 (22%), Positives = 122/298 (40%), Gaps = 41/298 (13%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL---FEPRFSPNQQKVAYATYD 232 RI FVS V + V++RDG N +T R L F+P +SP+ +K+ + + D Sbjct: 59 RIAFVSSDGV----HAGIRVIERDGQNPVPVTDDRSWNLFTEFDP-WSPDGKKLLFLS-D 112 Query: 233 DEDILRVYLMDTRIDRAPK-----RIGNFRSMI-LAPRFSSNGKRALIS----------- 275 L ++ M+ + RI + ++++GKR + + Sbjct: 113 GGRGLDLWTMNPDGTGRVRLTEGGRIVPIPGLSGYGADWNTDGKRIVYTSCLFDDAAIQE 172 Query: 276 ---VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 DI+ +D ++LT + P +I + +DR G +++ MQ Sbjct: 173 VNLSAIRTEADIWIMDADGGNKKQLTTD-GDARLPLWQPQGDRIAYLADRSGNREIWTMQ 231 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----FAIGVMKKDGSQERLLVE 388 S+G+ + +++ E S + WSP G IA+ S F++ ++ DGS L Sbjct: 232 SDGTGKTQVTF-SEGSVSEYSWSPDGTRIAYVVASPPGTLPEFSLRIINSDGSGSEQLTT 290 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTPAYASDPQWVG 444 + +P WSP G + F + L+ + +G + + PAY QW Sbjct: 291 GNRDTSPVWSPDGTRIAF---RSESRDRALWVMKSDGSGLAPLGPDNPAYMMQ-QWSP 344 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 106/271 (39%), Gaps = 35/271 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-- 260 + P +SP+ ++A+ + D + + R + P + + RS Sbjct: 37 PVVQLTNDSAFDSYPFWSPDGARIAFVSSD--GVHAGIRVIERDGQNPVPVTDDRSWNLF 94 Query: 261 --LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-------NISASYSP 311 P +S +GK+ L +D+++++ RLT I A ++ Sbjct: 95 TEFDP-WSPDGKKLLFLSDGGRGLDLWTMNPDGTGRVRLTEGGRIVPIPGLSGYGADWNT 153 Query: 312 DSSQIVFESD---------------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 D +IV+ S R + +++M ++G ++K+++ D +A P+W P Sbjct: 154 DGKRIVYTSCLFDDAAIQEVNLSAIRT-EADIWIMDADGGNKKQLTTDGDARL--PLWQP 210 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIF--SRKKDGD 413 QGD IA+ I M+ DG + ++ + ++ +WSP G + + + Sbjct: 211 QGDRIAYLADRSGNREIWTMQSDGTGKTQVTFSEGSVSEYSWSPDGTRIAYVVASPPGTL 270 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L I+ +G + T + P W Sbjct: 271 PEFSLRIINSDGSGSEQLTTGNRDTSPVWSP 301 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 31/261 (11%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQIL------FEPRFSPNQQKVAYAT--YDDEDI 236 G L M+ DG LT + + ++ + +++ Y + +DD I Sbjct: 111 SDGGRGLDLWTMNPDGTGRVRLTEGGRIVPIPGLSGYGADWNTDGKRIVYTSCLFDDAAI 170 Query: 237 LRVYLMDTRI---------DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 V L R D K+ P + G R + +I+++ Sbjct: 171 QEVNLSAIRTEADIWIMDADGGNKKQLTTDGDARLPLWQPQGDRIAYLADRSGNREIWTM 230 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREGKEQ--LYVMQSNGSDQKRISQ 343 ++T + S+SPD ++I + S + L ++ S+GS ++++ Sbjct: 231 QSDGTGKTQVTFSEGSVSEYSWSPDGTRIAYVVASPPGTLPEFSLRIINSDGSGSEQLTT 290 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 PVWSP G IAF S ++ A+ VMK DGS L ++ WSP GR Sbjct: 291 GNR--DTSPVWSPDGTRIAFRSESRDR-ALWVMKSDGSGLAPLGPDNPAYMMQQWSPDGR 347 Query: 403 SLIFSRKKDGDTGSKLYSIDL 423 +++ S G+ LY+I L Sbjct: 348 TIVVS------DGNDLYAIPL 362 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 9/116 (7%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +RI +V S + + SL +++ DG+ LT P +SP+ ++A+ + + Sbjct: 257 TRIAYVVASPPGTLPEFSLRIINSDGSGSEQLTTGN--RDTSPVWSPDGTRIAFRSESRD 314 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 L V D +G + ++S +G+ ++S + D+Y++ L+ Sbjct: 315 RALWVMKSD---GSGLAPLGPDNPAYMMQQWSPDGRTIVVS----DGNDLYAIPLE 363 >gi|317180859|dbj|BAJ58645.1| translocation protein TolB [Helicobacter pylori F32] Length = 417 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 148/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ RL+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLRLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTSQEYAMGLILLDYN 400 >gi|147797552|emb|CAN73514.1| hypothetical protein VITISV_037210 [Vitis vinifera] Length = 715 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 141/398 (35%), Gaps = 63/398 (15%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++++ +++T P + F S G + + + D +E L+D+ Sbjct: 298 ILTESVVIERVT-PPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIE--LFDLLS----- 349 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 +R++ IS + D ++RI + S K+ ++ Sbjct: 350 --------NEFRELTRRISPQTHHFNPFISPD-STRIGYHRCRGDSNGGKSPHLLL---- 396 Query: 201 ANIRYLTPSRDQILF---EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 N++ P F P FSP ++AY + VY+++ + F Sbjct: 397 ENLKSPLPEISLFRFDGSFPSFSPGGDRIAYVEF-----PGVYVVNRDGSGRREV---FS 448 Query: 258 SMILAPRFSSNGKRALISVQKD---------EAMDIYSVDLQSNATERLTNTLFINISAS 308 + + + K + + + + I D+ + ++LT N S Sbjct: 449 GIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPSYKKLTTGGENNAFPS 508 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKF 366 SPD I F S R G + LY+M + ++ I + E + D WSP GD I F Sbjct: 509 PSPDGKWIAFRSGRSGYKNLYIMDAVXGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASD 568 Query: 367 S----GEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDG------- 412 G F + V+ +G+ R +V P +SP G+S++F+ Sbjct: 569 RENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPIS 628 Query: 413 -----DTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 ++ ++L+G L + P W Sbjct: 629 NAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 666 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 117/375 (31%), Gaps = 91/375 (24%) Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK---NSLCVMD-RDGAN 202 + ++ R + ++D Y G + + + E G ++ + V RDG+ Sbjct: 206 TGSTRRLTPYGVAD--YSPAVSPSGVW-TAVASYGERGWGGEVEELSTDIYVFRTRDGSE 262 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + P + + + + + +Y +R+ Sbjct: 263 RTKVVEHGG----WPCWV-DDSTLFFHRRGSDGWWSIYRAILTESVVIERVTPPGLHAFT 317 Query: 263 PRFSSNGK-RALISVQK--DEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQI 316 P S K ++ ++ + I DL SN LT + + SPDS++I Sbjct: 318 PATSPGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRI 377 Query: 317 VFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + R GK ++++ S IS + F P +SP GD IA+ +F G Sbjct: 378 GYHRCRGDSNGGKSPHLLLENLKSPLPEISLFRFDGSF-PSFSPGGDRIAYVEFPG---- 432 Query: 373 IGVMKKDGSQER------------------------------------------------ 384 + V+ +DGS R Sbjct: 433 VYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQP 492 Query: 385 ----LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL----NGRNETLINTP-- 434 L N P+ SP G+ + F + G LY +D G L P Sbjct: 493 SYKKLTTGGENNAFPSPSPDGKWIAFRSGRSG--YKNLYIMDAVXGERGGIHRLTEGPWT 550 Query: 435 ----AYASDPQWVGF 445 ++ D W+ F Sbjct: 551 DTMCNWSPDGDWIVF 565 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 18/118 (15%) Query: 218 RFSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRAL 273 +SP+ + +A+ + +Y++ K + P FS +GK + Sbjct: 555 NWSPDGDWIVFASDRENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIV 614 Query: 274 ISVQK--------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + DI+ V+L + RLT+ + + + +++P + V Sbjct: 615 FTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAPKVIRPV 672 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 27/221 (12%) Query: 220 SPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 S + + Y + + +R+ + +P S +G + Sbjct: 174 SLVGEXLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAV 233 Query: 275 SVQK----DEAMDIYSVDL------QSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 + ++ S D+ + ++ + DS+ +G Sbjct: 234 ASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGW---PCWVDDSTLFFHRRGSDG 290 Query: 325 KEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDL---IAFTKFSGEKFAIGVMKKDG 380 +Y S +R++ + F P SP +A + + + I + Sbjct: 291 WWSIYRAILTESVVIERVTPPGLHA-FTPATSPGNKNFIAVATRRLNSDYRHIELFDLLS 349 Query: 381 SQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 ++ R L ++ P SP + + R + G K Sbjct: 350 NEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK 390 Score = 43.5 bits (101), Expect = 0.081, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 24/175 (13%) Query: 269 GKRALISVQKDEA-------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES- 320 G+ + +++ +YS L + +T RLT + S + SP S Sbjct: 177 GEXLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASY 236 Query: 321 -DREGKEQ-------LYVMQS-NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +R + +YV ++ +GS++ ++ + P W L + S + Sbjct: 237 GERGWGGEVEELSTDIYVFRTRDGSERTKVVEHG----GWPCWVDDSTLFFHRRGSDGWW 292 Query: 372 AIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGR-SLIFSRKKDGDTGSKLYSIDL 423 +I S ER+ + P SP + + + ++ + DL Sbjct: 293 SIYRAILTESVVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDL 347 >gi|225459633|ref|XP_002285876.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 707 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 141/398 (35%), Gaps = 63/398 (15%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++++ +++T P + F S G + + + D +E L+D+ Sbjct: 290 ILTESVVIERVT-PPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIE--LFDLLS----- 341 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 +R++ IS + D ++RI + S K+ ++ Sbjct: 342 --------NEFRELTRRISPQTHHFNPFISPD-STRIGYHRCRGDSNGGKSPHLLL---- 388 Query: 201 ANIRYLTPSRDQILF---EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 N++ P F P FSP ++AY + VY+++ + F Sbjct: 389 ENLKSPLPEISLFRFDGSFPSFSPGGDRIAYVEF-----PGVYVVNRDGSGRREV---FS 440 Query: 258 SMILAPRFSSNGKRALISVQKD---------EAMDIYSVDLQSNATERLTNTLFINISAS 308 + + + K + + + + I D+ + ++LT N S Sbjct: 441 GIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPSYKKLTTGGENNAFPS 500 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKF 366 SPD I F S R G + LY+M + ++ I + E + D WSP GD I F Sbjct: 501 PSPDGKWIAFRSGRSGYKNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASD 560 Query: 367 S----GEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDG------- 412 G F + V+ +G+ R +V P +SP G+S++F+ Sbjct: 561 RENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPIS 620 Query: 413 -----DTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 ++ ++L+G L + P W Sbjct: 621 NAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 658 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 117/375 (31%), Gaps = 91/375 (24%) Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK---NSLCVMD-RDGAN 202 + ++ R + ++D Y G + + + E G ++ + V RDG+ Sbjct: 198 TGSTRRLTPYGVAD--YSPAVSPSGVW-TAVASYGERGWGGEVEELSTDIYVFRTRDGSE 254 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + P + + + + + +Y +R+ Sbjct: 255 RTKVVEHGG----WPCWV-DDSTLFFHRRGSDGWWSIYRAILTESVVIERVTPPGLHAFT 309 Query: 263 PRFSSNGK-RALISVQK--DEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQI 316 P S K ++ ++ + I DL SN LT + + SPDS++I Sbjct: 310 PATSPGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRI 369 Query: 317 VFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + R GK ++++ S IS + F P +SP GD IA+ +F G Sbjct: 370 GYHRCRGDSNGGKSPHLLLENLKSPLPEISLFRFDGSF-PSFSPGGDRIAYVEFPG---- 424 Query: 373 IGVMKKDGSQER------------------------------------------------ 384 + V+ +DGS R Sbjct: 425 VYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQP 484 Query: 385 ----LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL----NGRNETLINTP-- 434 L N P+ SP G+ + F + G LY +D G L P Sbjct: 485 SYKKLTTGGENNAFPSPSPDGKWIAFRSGRSG--YKNLYIMDAVDGERGGIHRLTEGPWT 542 Query: 435 ----AYASDPQWVGF 445 ++ D W+ F Sbjct: 543 DTMCNWSPDGDWIVF 557 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDR-DGANI-RYLTPSRDQILFEPRFSPNQQKVAYATYDD-- 233 S SG +L +MD DG + +SP+ + +A+ + Sbjct: 507 WIAFRSGRSGY--KNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENP 564 Query: 234 -EDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQK------------- 278 +Y++ K + P FS +GK + + Sbjct: 565 GGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHH 624 Query: 279 -DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 DI+ V+L + RLT+ + + + +++P + V Sbjct: 625 YQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAPKVIRPV 664 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 27/221 (12%) Query: 220 SPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 S + + Y + + +R+ + +P S +G + Sbjct: 166 SLVGEDLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAV 225 Query: 275 SVQK----DEAMDIYSVDL------QSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 + ++ S D+ + ++ + DS+ +G Sbjct: 226 ASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGW---PCWVDDSTLFFHRRGSDG 282 Query: 325 KEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDL---IAFTKFSGEKFAIGVMKKDG 380 +Y S +R++ + F P SP +A + + + I + Sbjct: 283 WWSIYRAILTESVVIERVTPPGLHA-FTPATSPGNKNFIAVATRRLNSDYRHIELFDLLS 341 Query: 381 SQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 ++ R L ++ P SP + + R + G K Sbjct: 342 NEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK 382 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 17/153 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ-------LYVMQS- 333 +YS L + +T RLT + S + SP S +R + +YV ++ Sbjct: 191 VYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASYGERGWGGEVEELSTDIYVFRTR 250 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ--ERLLVEDSN 391 +GS++ ++ + P W L + S ++I S ER+ + Sbjct: 251 DGSERTKVVEHG----GWPCWVDDSTLFFHRRGSDGWWSIYRAILTESVVIERVTPPGLH 306 Query: 392 LQAPTWSPSGR-SLIFSRKKDGDTGSKLYSIDL 423 P SP + + + ++ + DL Sbjct: 307 AFTPATSPGNKNFIAVATRRLNSDYRHIELFDL 339 >gi|332673925|gb|AEE70742.1| tol-Pal system beta propeller repeat protein TolB [Helicobacter pylori 83] Length = 417 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 148/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ RL+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLRLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|261838455|gb|ACX98221.1| TonB-independent protein-uptake protein [Helicobacter pylori 51] gi|317177877|dbj|BAJ55666.1| translocation protein TolB [Helicobacter pylori F16] Length = 417 Score = 150 bits (380), Expect = 4e-34, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 148/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ RL+DV Sbjct: 61 QHFDV--------SQNKEQGTINYAELKDKKVHLVALVSVAVENGNKIS-RLRLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|225459635|ref|XP_002285877.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 680 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 141/398 (35%), Gaps = 63/398 (15%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++++ +++T P + F S G + + + D +E L+D+ Sbjct: 263 ILTESVVIERVT-PPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIE--LFDLLS----- 314 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 +R++ IS + D ++RI + S K+ ++ Sbjct: 315 --------NEFRELTRRISPQTHHFNPFISPD-STRIGYHRCRGDSNGGKSPHLLL---- 361 Query: 201 ANIRYLTPSRDQILF---EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 N++ P F P FSP ++AY + VY+++ + F Sbjct: 362 ENLKSPLPEISLFRFDGSFPSFSPGGDRIAYVEF-----PGVYVVNRDGSGRREV---FS 413 Query: 258 SMILAPRFSSNGKRALISVQKD---------EAMDIYSVDLQSNATERLTNTLFINISAS 308 + + + K + + + + I D+ + ++LT N S Sbjct: 414 GIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPSYKKLTTGGENNAFPS 473 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKF 366 SPD I F S R G + LY+M + ++ I + E + D WSP GD I F Sbjct: 474 PSPDGKWIAFRSGRSGYKNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASD 533 Query: 367 S----GEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDG------- 412 G F + V+ +G+ R +V P +SP G+S++F+ Sbjct: 534 RENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPIS 593 Query: 413 -----DTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 ++ ++L+G L + P W Sbjct: 594 NAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 631 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 117/375 (31%), Gaps = 91/375 (24%) Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK---NSLCVMD-RDGAN 202 + ++ R + ++D Y G + + + E G ++ + V RDG+ Sbjct: 171 TGSTRRLTPYGVAD--YSPAVSPSGVW-TAVASYGERGWGGEVEELSTDIYVFRTRDGSE 227 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + P + + + + + +Y +R+ Sbjct: 228 RTKVVEHGG----WPCWV-DDSTLFFHRRGSDGWWSIYRAILTESVVIERVTPPGLHAFT 282 Query: 263 PRFSSNGK-RALISVQK--DEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQI 316 P S K ++ ++ + I DL SN LT + + SPDS++I Sbjct: 283 PATSPGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRI 342 Query: 317 VFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + R GK ++++ S IS + F P +SP GD IA+ +F G Sbjct: 343 GYHRCRGDSNGGKSPHLLLENLKSPLPEISLFRFDGSF-PSFSPGGDRIAYVEFPG---- 397 Query: 373 IGVMKKDGSQER------------------------------------------------ 384 + V+ +DGS R Sbjct: 398 VYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQP 457 Query: 385 ----LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL----NGRNETLINTP-- 434 L N P+ SP G+ + F + G LY +D G L P Sbjct: 458 SYKKLTTGGENNAFPSPSPDGKWIAFRSGRSG--YKNLYIMDAVDGERGGIHRLTEGPWT 515 Query: 435 ----AYASDPQWVGF 445 ++ D W+ F Sbjct: 516 DTMCNWSPDGDWIVF 530 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDR-DGANI-RYLTPSRDQILFEPRFSPNQQKVAYATYDD-- 233 S SG +L +MD DG + +SP+ + +A+ + Sbjct: 480 WIAFRSGRSGY--KNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENP 537 Query: 234 -EDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQK------------- 278 +Y++ K + P FS +GK + + Sbjct: 538 GGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHH 597 Query: 279 -DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 DI+ V+L + RLT+ + + + +++P + V Sbjct: 598 YQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAPKVIRPV 637 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 27/221 (12%) Query: 220 SPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 S + + Y + + +R+ + +P S +G + Sbjct: 139 SLVGEDLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAV 198 Query: 275 SVQK----DEAMDIYSVDL------QSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 + ++ S D+ + ++ + DS+ +G Sbjct: 199 ASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGW---PCWVDDSTLFFHRRGSDG 255 Query: 325 KEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDL---IAFTKFSGEKFAIGVMKKDG 380 +Y S +R++ + F P SP +A + + + I + Sbjct: 256 WWSIYRAILTESVVIERVTPPGLHA-FTPATSPGNKNFIAVATRRLNSDYRHIELFDLLS 314 Query: 381 SQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 ++ R L ++ P SP + + R + G K Sbjct: 315 NEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK 355 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 17/153 (11%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQ-------LYVMQS- 333 +YS L + +T RLT + S + SP S +R + +YV ++ Sbjct: 164 VYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASYGERGWGGEVEELSTDIYVFRTR 223 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ--ERLLVEDSN 391 +GS++ ++ + P W L + S ++I S ER+ + Sbjct: 224 DGSERTKVVEHG----GWPCWVDDSTLFFHRRGSDGWWSIYRAILTESVVIERVTPPGLH 279 Query: 392 LQAPTWSPSGR-SLIFSRKKDGDTGSKLYSIDL 423 P SP + + + ++ + DL Sbjct: 280 AFTPATSPGNKNFIAVATRRLNSDYRHIELFDL 312 >gi|213420647|ref|ZP_03353713.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 162 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 5/163 (3%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG ++ G V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQL 119 Query: 131 WDVKD--RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 D + + + R HT SD++++ +TG KG Sbjct: 120 VDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 162 >gi|317182380|dbj|BAJ60164.1| translocation protein TolB [Helicobacter pylori F57] Length = 417 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 150/416 (36%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLIYTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDTNYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++V V E +++ RL+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVVLVSVAVENGNKIS-RLRLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D + Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDNS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|315587015|gb|ADU41396.1| translocation protein TolB [Helicobacter pylori 35A] Length = 417 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 148/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ RL+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLRLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKVLMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|94971181|ref|YP_593229.1| transcriptional regulatory protein-like [Candidatus Koribacter versatilis Ellin345] gi|94553231|gb|ABF43155.1| transcriptional regulatory protein-like protein [Candidatus Koribacter versatilis Ellin345] Length = 717 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 102/285 (35%), Gaps = 59/285 (20%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM---ILAPRFSSNGKRALI 274 +SP+ +++ ++ + K I + + P FS +GK+ Sbjct: 287 SWSPDGKRLIFSDGKSANSPSSIFELDLETGTAKAITSPPKLWDGDSGPAFSPDGKKIAF 346 Query: 275 S-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + D+Y +D RLTN + S S++ D IV+ S+R GK L+ + + Sbjct: 347 VRGSEGWVQDLYVMDAAGGEPTRLTNDGRMMASISWAADGKSIVYSSNRAGKFSLWRIPA 406 Query: 334 NGSDQKRISQDKEASYF------------------------------------------- 350 G +RI E ++ Sbjct: 407 TGGTAERIGVGTEDAFGPSVSRNGDHLAYTQGSSIYGIHRLDLKAPKSAATTILSSTQQD 466 Query: 351 -DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFS 407 P SP G +AF + + V DG + E S +P+WSP G+ L F Sbjct: 467 SAPKLSPDGSRVAFQSWRSGTQEVWVAGSDGKNPERVTSFEKSLTGSPSWSPDGKQLAFD 526 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 + +G S +Y++ L+G + P ++SD +WV F Sbjct: 527 ARPEGR--SHIYALRLDGGQPKAVTDGDFNDILPNWSSDGKWVYF 569 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 12/244 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S +P FSP+ +VA+ + R + P ++ + +P +S Sbjct: 182 FTSYPGSQTQPAFSPDGNQVAFVWNGEGGENRNIYVKIIGSETPLQLTHDAGQDYSPTWS 241 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI---NISA-SYSPDSSQIVFESDR 322 +G+ D I+ V A ++ I +A S+SPD +++F + Sbjct: 242 PDGRSIAFLRYTDTDRGIFMVPALGGAEHKVFTPTGIVEWERNALSWSPDGKRLIFSDGK 301 Query: 323 EGK--EQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMK 377 ++ + K I+ + P +SP G IAF + S G + VM Sbjct: 302 SANSPSSIFELDLETGTAKAITSPPKLWDGDSGPAFSPDGKKIAFVRGSEGWVQDLYVMD 361 Query: 378 KDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 G + L D + A +W+ G+S+++S + G L+ I G I Sbjct: 362 AAGGEPTRLTNDGRMMASISWAADGKSIVYSSNRAGKF--SLWRIPATGGTAERIGVGTE 419 Query: 437 ASDP 440 + Sbjct: 420 DAFG 423 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 103/303 (33%), Gaps = 63/303 (20%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G+ + P +SP+ + +A+ Y D D R M + A ++ + Sbjct: 221 GSETPLQLTHDAGQDYSPTWSPDGRSIAFLRYTDTD--RGIFMVPALGGAEHKVFTPTGI 278 Query: 260 IL----APRFSSNGKRALISV--QKDEAMDIYSVDLQSNATERLTNTLFI---NISASYS 310 + A +S +GKR + S + I+ +DL++ + +T+ + + ++S Sbjct: 279 VEWERNALSWSPDGKRLIFSDGKSANSPSSIFELDLETGTAKAITSPPKLWDGDSGPAFS 338 Query: 311 PDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD +I F EG Q LYVM + G + R++ D W+ G I ++ Sbjct: 339 PDGKKIAFVRGSEGWVQDLYVMDAAGGEPTRLTNDGRM-MASISWAADGKSIVYSSNRAG 397 Query: 370 KFAIGVMKKDGS----------------------------------------------QE 383 KF++ + G Sbjct: 398 KFSLWRIPATGGTAERIGVGTEDAFGPSVSRNGDHLAYTQGSSIYGIHRLDLKAPKSAAT 457 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT--PAYASDPQ 441 +L AP SP G + F + G +++ +G+N + + + P Sbjct: 458 TILSSTQQDSAPKLSPDGSRVAFQSWRSGTQ--EVWVAGSDGKNPERVTSFEKSLTGSPS 515 Query: 442 WVG 444 W Sbjct: 516 WSP 518 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF-RSMILAPRFSS 267 S Q P+ SP+ +VA+ ++ + + + P+R+ +F +S+ +P +S Sbjct: 461 SSTQQDSAPKLSPDGSRVAFQSWRSG--TQEVWVAGSDGKNPERVTSFEKSLTGSPSWSP 518 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +GK+ + + IY++ L + +T+ F +I ++S D + F S+R G Q Sbjct: 519 DGKQLAFDARPEGRSHIYALRLDGGQPKAVTDGDFNDILPNWSSDGKWVYFASNRGGAWQ 578 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LL 386 ++ S G +++++ F S G + F K + + M G E+ ++ Sbjct: 579 IWKAPSEGGTPQQVTKHGG---FVGQESFDGKWLYFAK--PDAVGLFRMPVSGGDEQKIM 633 Query: 387 VEDSNLQAPTWS--PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + WS P+G + + + G + +L+G + T ++ Sbjct: 634 NQPPEAYWGYWSLTPNG--IYYLNETGGKMSIE--FAELDGTHPTRVH 677 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 101/253 (39%), Gaps = 19/253 (7%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SR+ F S + + V DG N +T + P +SP+ +++A+ E Sbjct: 476 SRVAFQSWRSGT----QEVWVAGSDGKNPERVTSFEKSLTGSPSWSPDGKQLAF-DARPE 530 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +Y + PK + + + P +SS+GK + + A I+ + Sbjct: 531 GRSHIYALRLD-GGQPKAVTDGDFNDILPNWSSDGKWVYFASNRGGAWQIWKAPSEGGTP 589 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPV 353 +++T S+ D + F + L+ M +G D+++I Q EA + Sbjct: 590 QQVTKHGGFVGQESF--DGKWLYFA--KPDAVGLFRMPVSGGDEQKIMNQPPEAYWGYWS 645 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP----TWSPSGRSLIFSRK 409 +P G I + +G K +I + DG+ + P + +P G++L++ Sbjct: 646 LTPNG--IYYLNETGGKMSIEFAELDGTHPTRVHVLERGLPPFSGLSVTPDGKTLLY--N 701 Query: 410 KDGDTGSKLYSID 422 + GS + +D Sbjct: 702 DRVEAGSHITLVD 714 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 18/192 (9%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLY 329 +++ +S T T+ ++SPD +Q+ F + EG +Y Sbjct: 157 VYFAIRATRPPVAQPGPEESYRTIPFTSYPGSQTQPAFSPDGNQVAFVWNGEGGENRNIY 216 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVE 388 V +++ D Y P WSP G IAF +++ I ++ G++ ++ Sbjct: 217 VKIIGSETPLQLTHDAGQDY-SPTWSPDGRSIAFLRYTDTDRGIFMVPALGGAEHKVFTP 275 Query: 389 DSNLQAP----TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT----------P 434 ++ +WSP G+ LIFS K ++ S ++ +DL I + P Sbjct: 276 TGIVEWERNALSWSPDGKRLIFSDGKSANSPSSIFELDLETGTAKAITSPPKLWDGDSGP 335 Query: 435 AYASDPQWVGFM 446 A++ D + + F+ Sbjct: 336 AFSPDGKKIAFV 347 >gi|261839858|gb|ACX99623.1| translocation protein TolB [Helicobacter pylori 52] Length = 417 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 137/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + ++ V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + RL+DV + + AH ++ + + + R++ S+ Sbjct: 100 IS-RLRLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|268315824|ref|YP_003289543.1| periplasmic component of the Tol biopolymer transport system-like protein [Rhodothermus marinus DSM 4252] gi|262333358|gb|ACY47155.1| periplasmic component of the Tol biopolymer transport system-like protein [Rhodothermus marinus DSM 4252] Length = 497 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 15/206 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + + E R + I+ R +S +G+ + + ++D Sbjct: 289 SPDGRWLGLSHHAPEYGGRSIIYVVPIEGGTPRQVTPTGPSYLHGWSPDGRYLVYTAERD 348 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DIY + ++ RLT+T ++ YSPD I F S R G Q++ M+ +G++ + Sbjct: 349 GDYDIYRIPVEGGEEVRLTDTPGLDDGPEYSPDGRYIYFNSVRSGTMQIWRMRPDGTEPE 408 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEK----------FAIGVMKKDGSQERLLV-- 387 +++ D ++F P SP G + F + + + +M G R++ Sbjct: 409 QLTDDAFNNWF-PHVSPDGRWVLFLSYLPDVDPSDHPFYRLVYLRMMPAAGGSPRVVAYL 467 Query: 388 --EDSNLQAPTWSPSGRSLIFSRKKD 411 L +W+P R F D Sbjct: 468 YGGQGTLNVNSWAPDSRHAAFVSNSD 493 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 22/232 (9%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + Y D + ++D R K + + I AP ++ +G+ + +D +Y Sbjct: 210 FVPYQDYIGSLLEVLDVETGR-RKVLYTSEASIQAPNWTPDGRALIY--NQDGL--LYRF 264 Query: 288 DLQSNATERLTNTLF--INISASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRIS 342 DL + + N SPD + G+ +YV+ G ++++ Sbjct: 265 DLATRRPSVIPTGFATQNNNDHVLSPDGRWLGLSHHAPEYGGRSIIYVVPIEGGTPRQVT 324 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSG 401 + WSP G + +T + I + +G +E L + P +SP G Sbjct: 325 PTGPSYLHG--WSPDGRYLVYTAERDGDYDIYRIPVEGGEEVRLTDTPGLDDGPEYSPDG 382 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-------ASDPQWVGFM 446 R + F+ + G +++ + +G + A+ + D +WV F+ Sbjct: 383 RYIYFNSVRSGTM--QIWRMRPDGTEPEQLTDDAFNNWFPHVSPDGRWVLFL 432 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 16/208 (7%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + R L +S ++ + V+ +G R +TP+ L +SP+ + + Y D Sbjct: 291 DGRWLGLSHHAPEYGGRSIIYVVPIEGGTPRQVTPTGPSYLHG--WSPDGRYLVYTAERD 348 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 D +Y + R+ + + P +S +G+ + + M I+ + Sbjct: 349 GD-YDIYRIPVEGGEEV-RLTDTPGLDDGPEYSPDGRYIYFNSVRSGTMQIWRMRPDGTE 406 Query: 294 TERLTNTLFINISASYSPDSSQIVFES-----DREGKE-----QLYVMQSNGSDQKRIS- 342 E+LT+ F N SPD ++F S D L +M + G + ++ Sbjct: 407 PEQLTDDAFNNWFPHVSPDGRWVLFLSYLPDVDPSDHPFYRLVYLRMMPAAGGSPRVVAY 466 Query: 343 -QDKEASYFDPVWSPQGDLIAFTKFSGE 369 + + W+P AF S + Sbjct: 467 LYGGQGTLNVNSWAPDSRHAAFVSNSDK 494 >gi|91773136|ref|YP_565828.1| periplasmic component of the Tol biopolymer transport system-like protein [Methanococcoides burtonii DSM 6242] gi|91712151|gb|ABE52078.1| TolB-like beta propeller protein [Methanococcoides burtonii DSM 6242] Length = 407 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 36/297 (12%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ------ILFEPR---FSPNQQKVA 227 I++ + S V I +MD DG+N LT + F P +SP+ K+ Sbjct: 47 IVYHTLSEVGAIGNTKTWMMDIDGSNKTQLTSGKSLGPLFLISGFSPTDNPWSPDGDKLL 106 Query: 228 YATY-------DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 Y + D L+ + D K S ++ N + + D+ Sbjct: 107 YGSLLGVEIIGDIPVFLKTDIQIMNADGTSKNKVKGSSNAEYYGWAQNTTKIFMV---DK 163 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + ++ ++ +T + + P ++IVF SDR G ++VM +G+ + + Sbjct: 164 SKKLWLLNPDGTEKVLITQGDENDSQFLWQPHGNKIVFRSDRGGYPDIWVMNYDGTGKLQ 223 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFS-----------GEKFAIGVMKKDGSQERLLV-- 387 +S + E D WS G IA+ S +I VM DGS ++ L Sbjct: 224 LS-NSEEKELDIKWSMDGTKIAYVSPSVLNTSNLSTFFNSSHSIWVMNSDGSDKKKLTGR 282 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D P +SP G + F ++ K+ +D++G NET++ A PQW Sbjct: 283 HDRWDARPEFSPDGEKIAFDTTYKNESDPKIIVMDVDGTNETVL---AKGWMPQWSP 336 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 102/246 (41%), Gaps = 23/246 (9%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K + +M+ DG + + S + + ++ N K+ + + +++L++ Sbjct: 124 KTDIQIMNADGTSKNKVKGSSNAEYYG--WAQNTTKI----FMVDKSKKLWLLNPDGTEK 177 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 I + +G + + + DI+ ++ +L+N+ + + Sbjct: 178 V-LITQGDENDSQFLWQPHGNKIVFRSDRGGYPDIWVMNYDGTGKLQLSNSEEKELDIKW 236 Query: 310 SPDSSQIVFESDR-----------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 S D ++I + S ++VM S+GSD+K+++ + P +SP G Sbjct: 237 SMDGTKIAYVSPSVLNTSNLSTFFNSSHSIWVMNSDGSDKKKLTGRHDRWDARPEFSPDG 296 Query: 359 DLIAF--TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 + IAF T + I VM DG+ E +L + P WSP G + F+ K ++ Sbjct: 297 EKIAFDTTYKNESDPKIIVMDVDGTNETVLAKG---WMPQWSPMGNKIAFTGKSGNNSVV 353 Query: 417 KLYSID 422 + ++D Sbjct: 354 SVIALD 359 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 84/205 (40%), Gaps = 22/205 (10%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L +++ DG + L D+ + + P+ K+ + + D +++M+ Sbjct: 163 KSKKLWLLNPDGT-EKVLITQGDENDSQFLWQPHGNKIVFRS-DRGGYPDIWVMNYDGTG 220 Query: 249 APKRIGNFRSMILAPRFSSNGKRALI-----------SVQKDEAMDIYSVDLQSNATERL 297 + + N L ++S +G + S + + I+ ++ + ++L Sbjct: 221 KLQ-LSNSEEKELDIKWSMDGTKIAYVSPSVLNTSNLSTFFNSSHSIWVMNSDGSDKKKL 279 Query: 298 T-NTLFINISASYSPDSSQIVF--ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 T + +SPD +I F E ++ VM +G+++ +++ + P W Sbjct: 280 TGRHDRWDARPEFSPDGEKIAFDTTYKNESDPKIIVMDVDGTNETVLAKG-----WMPQW 334 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKD 379 SP G+ IAFT SG + V+ D Sbjct: 335 SPMGNKIAFTGKSGNNSVVSVIALD 359 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 386 LVEDS-NLQAPTWSPSGRSLIF--SRKKDGDTGSKLYSIDLNGRNETLINTP 434 L + + + P WSP G +++ + +K + +D++G N+T + + Sbjct: 28 LTDGTESNGFPQWSPDGEMIVYHTLSEVGAIGNTKTWMMDIDGSNKTQLTSG 79 >gi|82621714|gb|ABB86530.1| putative aminopeptidase [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3'] Length = 354 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 122/331 (36%), Gaps = 60/331 (18%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F I F+S N + + + +IR +T D +S + +K+ + + Sbjct: 6 IFLITISFISCKSEDKQKSNLIYEDESNFKSIRQVTFGGDNAEAY--WSFDDEKLVFQSN 63 Query: 232 DDE------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEA-- 281 + + + + DT D P + + F + K + + KD+ Sbjct: 64 NSDWGVGCDQMFIMNSDDTFDDSKPNMVSTGKGRTTCSYFLPDNKHIIYASTHLKDDNCP 123 Query: 282 -----------------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 DI+ DL N +LT+ + A+ SP +IVF S R G Sbjct: 124 EVPLRKEGKYVWPIYDSFDIFISDLDGNIINQLTDEKGYDAEATVSPLGDKIVFTSTRNG 183 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------------- 369 LY M +G++ K+I+ D +SP G I F + Sbjct: 184 DIDLYTMNIDGANVKQITFDL-GYDGGAFFSPDGSKIIFRSSRPKSEEQIKEYQDLLDQG 242 Query: 370 -----KFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGS--KLYSI 421 + + + DG R L + N +P + PSG ++FS + + G LY I Sbjct: 243 LVQPTEMELYICDSDGKNLRQLTDLGNANWSPVFHPSGEKILFSSNFESERGFPFNLYMI 302 Query: 422 DLNGRNETLINT-------PAYASDPQWVGF 445 DL+G+N T + P ++ D + + F Sbjct: 303 DLDGKNLTRVTHSETFDAFPVFSRDGKKLAF 333 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 116/293 (39%), Gaps = 52/293 (17%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDG----ANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + +++F S + G+ + + +M+ D + ++ + + F P+ + + YA Sbjct: 55 DEKLVFQSNNSDWGVGCDQMFIMNSDDTFDDSKPNMVSTGKGRTTCS-YFLPDNKHIIYA 113 Query: 230 TYDDED--------------------ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +D +++ D ++ + + S G Sbjct: 114 STHLKDDNCPEVPLRKEGKYVWPIYDSFDIFISDLD-GNIINQLTDEKGYDAEATVSPLG 172 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---- 325 + + + ++ +D+Y++++ +++T L + A +SPD S+I+F S R Sbjct: 173 DKIVFTSTRNGDIDLYTMNIDGANVKQITFDLGYDGGAFFSPDGSKIIFRSSRPKSEEQI 232 Query: 326 ----------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 +LY+ S+G + ++++ A++ PV+ P G+ I F+ Sbjct: 233 KEYQDLLDQGLVQPTEMELYICDSDGKNLRQLTDLGNANW-SPVFHPSGEKILFSSNFES 291 Query: 367 -SGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK 417 G F + ++ DG + A P +S G+ L FS ++ + + Sbjct: 292 ERGFPFNLYMIDLDGKNLTRVTHSETFDAFPVFSRDGKKLAFSSNRNNNGTRE 344 >gi|317178571|dbj|BAJ56359.1| translocation protein TolB [Helicobacter pylori F30] Length = 417 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 147/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ RL+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLRLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAG 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|260061950|ref|YP_003195030.1| hypothetical protein RB2501_10125 [Robiginitalea biformata HTCC2501] gi|257796359|gb|EAR17253.2| hypothetical protein RB2501_10125 [Robiginitalea biformata HTCC2501] Length = 486 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 18/208 (8%) Query: 221 PNQQKVAYATY--DDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQ 277 P+ ++A + + DD + +Y + P+++ +S++G+ L + Sbjct: 280 PDGSRIAISHHNPDDGGVSSIYHLPIEGSDHPEKVTGEGLGASYLHGWSADGQTMLFTGN 339 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 ++ DIY+VD+ S +LTN ++ + YSPD I F S+R G Q++ M+ +GS+ Sbjct: 340 RNGQYDIYAVDVASGKETQLTNQETLDDGSEYSPDGQWIYFNSNRTGTMQIWRMRPDGSE 399 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----------IGVMKKDGSQERLLV 387 Q +++ D+ +F P SP G + F + + +M +G Q + Sbjct: 400 QTQLTHDRFNDWF-PHVSPDGKQVVMISFPTSVPSGDHPFYKHCMLRIMPYEGGQPVAIA 458 Query: 388 ----EDSNLQAPTWSPSGRSLIFSRKKD 411 + P+WSP R + F D Sbjct: 459 YVYGGQGTINVPSWSPDSRYIAFVTNSD 486 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 73/208 (35%), Gaps = 15/208 (7%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + +S +S+ + +G++ +T + +S + Q + + Sbjct: 281 DGSRIAISHHNPDDGGVSSIYHLPIEGSDHPEKVTGEGLGASYLHGWSADGQTMLFTGNR 340 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + +Y +D + + + N ++ +S +G+ + + M I+ + + Sbjct: 341 NGQ-YDIYAVDVASGKETQ-LTNQETLDDGSEYSPDGQWIYFNSNRTGTMQIWRMRPDGS 398 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKE----------QLYVMQSNGSDQKRIS 342 +LT+ F + SPD Q+V S L +M G I+ Sbjct: 399 EQTQLTHDRFNDWFPHVSPDGKQVVMISFPTSVPSGDHPFYKHCMLRIMPYEGGQPVAIA 458 Query: 343 --QDKEASYFDPVWSPQGDLIAFTKFSG 368 + + P WSP IAF S Sbjct: 459 YVYGGQGTINVPSWSPDSRYIAFVTNSD 486 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 15/183 (8%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--INISASYSPDSSQIVFE 319 AP ++ +GK + + +Y+ DL+S L N PD S+I Sbjct: 233 APNWTPDGKTLIY----NSNGYLYTYDLESGRIGVLNTGFADSNNNDHVLLPDGSRIA-I 287 Query: 320 S----DREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 S D G +Y + GSD ++++ + + + WS G + FT ++ I Sbjct: 288 SHHNPDDGGVSSIYHLPIEGSDHPEKVTGEGLGASYLHGWSADGQTMLFTGNRNGQYDIY 347 Query: 375 VMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + +E L L + +SP G+ + F+ + G +++ + +G +T + Sbjct: 348 AVDVASGKETQLTNQETLDDGSEYSPDGQWIYFNSNRTGTM--QIWRMRPDGSEQTQLTH 405 Query: 434 PAY 436 + Sbjct: 406 DRF 408 >gi|188527910|ref|YP_001910597.1| translocation protein TolB [Helicobacter pylori Shi470] gi|188144150|gb|ACD48567.1| translocation protein TolB [Helicobacter pylori Shi470] gi|308063912|gb|ADO05799.1| translocation protein TolB [Helicobacter pylori Sat464] Length = 417 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 66/416 (15%), Positives = 148/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLRTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPIILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|325110069|ref|YP_004271137.1| peptidase M28 [Planctomyces brasiliensis DSM 5305] gi|324970337|gb|ADY61115.1| peptidase M28 [Planctomyces brasiliensis DSM 5305] Length = 1051 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 56/280 (20%) Query: 219 FSPNQQKVAYATYDDED--ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-- 274 FS + ++ + + + ++Y++D +RI +G+R L Sbjct: 85 FSADGDELVFQSEREPGNPFFQIYVLDLETGDE-ERISPGVGKTTCGWIHPDGERVLFAS 143 Query: 275 --------------------------SVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 S D ++++ + ++ +LTN L + S Sbjct: 144 THQDKEAKAKQKQELDAREAGEQKRYSWDYDPTYELFAYNRKTKQYTQLTNELGYDAEGS 203 Query: 309 YSPDSSQIVFESDREGKEQ-------------------LYVMQSNGSDQKRISQDKEASY 349 YSPD S I F S+R E+ +YVM ++GS+ ++++ D Sbjct: 204 YSPDGSLIAFASNRGAYERELTAEEKEQLERDPAAFMEIYVMNADGSNVRQLT-DVFGYD 262 Query: 350 FDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIF 406 P +SP G I + +F G I M DGS R L + + AP + PSG L+F Sbjct: 263 GGPFFSPDGKRICWRRFDKHGATAEIMTMNVDGSDVRQLTDWQVMSWAPFYHPSGEYLVF 322 Query: 407 SRKKDGDTGSKLYSIDLNGR--NETLINTPAYASDPQWVG 444 + + G + +LY + +G+ + N + P + Sbjct: 323 TTNRHGFSNFELYLVAADGQQDPIRVTNADGFDGLPAFSP 362 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 55/249 (22%) Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK---DEAMDIYSVDLQSNATERLTNTLFIN 304 P+++ FS++G + ++ + IY +DL++ ER++ + Sbjct: 68 SNPRQLTFAGRRSGEGYFSADGDELVFQSEREPGNPFFQIYVLDLETGDEERISPGVGKT 127 Query: 305 ISASYSPDSSQIVFES----------------------------DREGKEQLYVMQSNGS 336 PD +++F S D + +L+ Sbjct: 128 TCGWIHPDGERVLFASTHQDKEAKAKQKQELDAREAGEQKRYSWDYDPTYELFAYNRKTK 187 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-------------------FAIGVMK 377 +++ + + +SP G LIAF G I VM Sbjct: 188 QYTQLTNEL-GYDAEGSYSPDGSLIAFASNRGAYERELTAEEKEQLERDPAAFMEIYVMN 246 Query: 378 KDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 DGS R L + P +SP G+ + + R +++ +++++G + + + Sbjct: 247 ADGSNVRQLTDVFGYDGGPFFSPDGKRICWRRFDKHGATAEIMTMNVDGSDVRQLTD--W 304 Query: 437 ASDPQWVGF 445 W F Sbjct: 305 QVM-SWAPF 312 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAP 250 + M+ DG+++R LT + + + P + P+ + + + T +YL+ + P Sbjct: 287 EIMTMNVDGSDVRQLTDWQ-VMSWAPFYHPSGEYLVFTTNRHGFSNFELYLVAADGQQDP 345 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 R+ N P FS +G + + + +A Sbjct: 346 IRVTNADGFDGLPAFSPDGNTLVWTSNRTDAKQ 378 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 S V + G L ++ DG + D P FSP+ + + + Sbjct: 316 SGEYLVFTTNRHGFSNFELYLVAADGQQDPIRVTNADGFDGLPAFSPDGNTLVWTSNR 373 >gi|296123962|ref|YP_003631740.1| hypothetical protein Plim_3729 [Planctomyces limnophilus DSM 3776] gi|296016302|gb|ADG69541.1| WD40 domain protein beta Propeller [Planctomyces limnophilus DSM 3776] Length = 354 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 120/302 (39%), Gaps = 50/302 (16%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + G + + G + V D R L+ R + F+P+Q Sbjct: 56 EGYFSPDGQWIVYQAYPV-----GYPFYQIYVQKLDEKTPRLLSTGRGRTTCA-YFTPDQ 109 Query: 224 QKVAYAT---------------------------YDDEDILRVYLMDTRIDRAPKRIGNF 256 +++ +A+ +D + + +Y ++ +R+ + Sbjct: 110 KRILFASAHTDPAIDLTEKKARDEAAQGGRRRYQWDFDPHMDLYTINFDGTGM-QRLTDT 168 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +S++GK+ + + +D D+Y ++ + +LTNT + +SPD + Sbjct: 169 PGYDAEGSYSADGKQIVFTSNRDGDADLYLMNADGSNIRQLTNTPGYDGGPFFSPDGQWV 228 Query: 317 VFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----- 369 +F SDRE + QLY + +G + +++++ + + P + P G + +++ Sbjct: 229 IFRSDREKEHMLQLYAISVDGKHEVQLTKNLDEVNWCPYFHPDGKSLIWSRADYSKGPAS 288 Query: 370 -KFAIGVMKKDGSQ--------ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 KF + M + + ++ D+ P +SP G+ L+++ + D S+L+ Sbjct: 289 AKFKLWWMPIETTSTTFTAGTPRQITFGDATDVLPVFSPDGKQLLWTSTRGSDATSQLWL 348 Query: 421 ID 422 D Sbjct: 349 AD 350 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 25/249 (10%) Query: 205 YLTPSRDQILFEPR-----FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 +L+ R PR FSP+ Q + Y Y + ++ P+ + R Sbjct: 40 FLSNQRQVSFGLPRAGEGYFSPDGQWIVYQAYPVGYPFYQIYVQKLDEKTPRLLSTGRGR 99 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 F+ + KR L + + ++D LT + +A + ++ Sbjct: 100 TTCAYFTPDQKRILFASAHTD----PAID--------LTEKKARDEAAQ----GGRRRYQ 143 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 D + LY + +G+ +R++ D + +S G I FT + +M D Sbjct: 144 WDFDPHMDLYTINFDGTGMQRLT-DTPGYDAEGSYSADGKQIVFTSNRDGDADLYLMNAD 202 Query: 380 GSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 GS R L P +SP G+ +IF ++ + +LY+I ++G++E + Sbjct: 203 GSNIRQLTNTPGYDGGPFFSPDGQWVIFRSDREKEHMLQLYAISVDGKHEVQLTKNLDEV 262 Query: 439 DPQWVGFMD 447 + W + Sbjct: 263 N--WCPYFH 269 >gi|222148505|ref|YP_002549462.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium vitis S4] gi|221735491|gb|ACM36454.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium vitis S4] Length = 277 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ Q +A + +Y++ + + N S +S +G+R +D Sbjct: 74 SPDGQWLAICDKVEHGKTCLYILPAKGGTPIQITENLPSYWHG--WSPDGQRVCYCGIRD 131 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + DIY++ + + +RLT+ N +S D I F S R G Q++ ++ +G D + Sbjct: 132 QVFDIYTISVDGSDEQRLTHGEGRNDGPDWSADGEWIYFNSSRSGTMQIWRIRPDGRDVQ 191 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE--- 388 R++ D + +F P P + F + + F + +M DG L E Sbjct: 192 RLTDDGQGDWF-PHPCPNNRKLVFISYDADVFDHPRDLHVRMRLMDMDGGNVETLFELFG 250 Query: 389 -DSNLQAPTWSPSGRSLIFSRK 409 + P+WSP G+ + R Sbjct: 251 GQGTINVPSWSPDGQEFAYVRY 272 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS- 291 + +Y ++TR + + ++ AP +S +G+ + ++ +Y + L Sbjct: 1 MRSSVEIYNIETR---QSRIVWQTERLVEAPNWSRDGQFLIF----NDDGLMYRLPLVGQ 53 Query: 292 NATERLTNTLFI--NISASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEAS 348 + E++ N SPD + E GK LY++ + G +I+++ + Sbjct: 54 SVPEKIDTGFATQCNNDHGLSPDGQWLAICDKVEHGKTCLYILPAKGGTPIQITENLPSY 113 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFS 407 + WSP G + + + F I + DGS E+ L P WS G + F+ Sbjct: 114 WHG--WSPDGQRVCYCGIRDQVFDIYTISVDGSDEQRLTHGEGRNDGPDWSADGEWIYFN 171 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + G +++ I +GR+ + W Sbjct: 172 SSRSGTM--QIWRIRPDGRDVQRLTDDGQ---GDWFP 203 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 14/189 (7%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L ++ G +T + + +SP+ Q+V Y D + +Y + Sbjct: 88 HGKTCLYILPAKGGTPIQITE--NLPSYWHGWSPDGQRVCYCGIRD-QVFDIYTISVD-G 143 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 +R+ + P +S++G+ + + M I+ + +RLT+ + Sbjct: 144 SDEQRLTHGEGRNDGPDWSADGEWIYFNSSRSGTMQIWRIRPDGRDVQRLTDDGQGDWFP 203 Query: 308 SYSPDSSQIVFESD--------REGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQ 357 P++ ++VF S R+ ++ +M +G + + + + + P WSP Sbjct: 204 HPCPNNRKLVFISYDADVFDHPRDLHVRMRLMDMDGGNVETLFELFGGQGTINVPSWSPD 263 Query: 358 GDLIAFTKF 366 G A+ ++ Sbjct: 264 GQEFAYVRY 272 Score = 70.0 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 16/170 (9%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + + T + + ++S D ++F D +Y + G Sbjct: 7 IYNIETRQSRIVWQTERLVEAPNWSRDGQFLIFNDD----GLMYRLPLVGQSVPEKIDTG 62 Query: 346 EASY--FDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 A+ D SP G +A K K + ++ G + E+ WSP G+ Sbjct: 63 FATQCNNDHGLSPDGQWLAICDKVEHGKTCLYILPAKGGTPIQITENLPSYWHGWSPDGQ 122 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + + D +Y+I ++G +E + P +++D +W+ F Sbjct: 123 RVCYCGIR--DQVFDIYTISVDGSDEQRLTHGEGRNDGPDWSADGEWIYF 170 >gi|297845140|ref|XP_002890451.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp. lyrata] gi|297336293|gb|EFH66710.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp. lyrata] Length = 703 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 129/384 (33%), Gaps = 57/384 (14%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P + F S + + G + VE L+D+ + + I SP S Sbjct: 296 TPPGLHAFTPATSPNNNNFIAVATRRPGSEIRHVE--LFDL-KKNEFIELTRLVSPKSQH 352 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 D +GD R + N L + DGA Sbjct: 353 FNPFLSPDSSRVGYHSCRGDATGRKTPRNLLQSLKTTSNDLSLFRFDGA----------- 401 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 P SP + A+ ++ V+++ + + M + Sbjct: 402 ---FPSISPEGDRFAFVSFTG-----VFVVKPDGSGLRQLL---PQMGFGTVWDPIRHGI 450 Query: 273 LISVQKD------EAMDIYSVDLQ----SNATERLTNTLFINISASYSPDSSQIVFESDR 322 + + +DI ++++ S A ++LT T N SPD +IVF S R Sbjct: 451 VYTSSGPALAPGKSQIDILAINVDAPNPSTAVKKLTTTGENNAFPWPSPDGKRIVFRSSR 510 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFTKFSGEK----FAIGVM 376 G + LY+M + + + + ++ D + WSP G+ I F I V+ Sbjct: 511 SGTKNLYIMDAEKGESGGLFRLTNGNWNDTIATWSPDGNWIVFASNREFPGTLLMNIYVV 570 Query: 377 KKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKDGDTG------------SKLYSI 421 DG+ R L P +SP + ++F+ G + S+++++ Sbjct: 571 HPDGTGLRKLAQNLTGGVSMHPMFSPDSKRIVFTTIYAGISAEQIGNPHFNVPSSEIFTV 630 Query: 422 DLNGRNETLINTPA-YASDPQWVG 444 +L+G T + + P W Sbjct: 631 NLDGSGMTRLTHNSVEDGPPMWFP 654 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 91/287 (31%), Gaps = 50/287 (17%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS---PNQQKVAYATYDDEDIL 237 S S ++ L N + +PS I P S P + Y T D Sbjct: 54 SHRPPSPADEHRLTDAKSVNFNGHFASPSPALISLLPNKSQIQPQDLHLIYVTERDGTPS 113 Query: 238 RVY--LMDTRIDRAPKRIG----------NFRSMILAPRFSSNGKRALISVQKDE----- 280 Y + D + + N SM P +S+ + + Sbjct: 114 LYYDVVHDDKSGSRVQVPLFSGEEQQSGMNVNSMKDTPVLTSD--YLVYVSTHENPGKPM 171 Query: 281 --AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-----------DREGKEQ 327 +YS +LQ+ +T RLT + S + SP S ++E Sbjct: 172 ASWAAVYSTELQTKSTRRLTPPGIADFSPAVSPSGKWTAVASYGEKGWTWSLVEKEISSD 231 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI---GVMKKDGSQER 384 +YV + +R+ ++ + P W + F + S + + ++ K G+ Sbjct: 232 IYVFLTRDG-TQRVKVVEQGGW--PRWVDDST-LYFHRKSDDGWICVYRAIIPKTGAVTT 287 Query: 385 LLVEDSNLQAP---TWSP-----SGRSLIFSRKKDGDTGSKLYSIDL 423 V + P ++P + + + ++ G + DL Sbjct: 288 KTVTIQRVTPPGLHAFTPATSPNNNNFIAVATRRPGSEIRHVELFDL 334 >gi|218258596|ref|ZP_03474939.1| hypothetical protein PRABACTJOHN_00594 [Parabacteroides johnsonii DSM 18315] gi|218225366|gb|EEC98016.1| hypothetical protein PRABACTJOHN_00594 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 16/207 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + + +++A + ED P+ I L +S +G++ + Sbjct: 90 IAADGKQIAISHGTKEDGKSRIYTLPMQGGTPRLITPIAPSYLH-GWSPDGRQLAYCADR 148 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 DIY + ++ RLT ++ YSP I F S R G Q++ M+ +GS+Q Sbjct: 149 KGNYDIYVIPVEGGEEIRLTTAEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKDGSEQ 208 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGSQERLLV 387 +++ D+ + + P SP G + F + + +M G + + LV Sbjct: 209 TQMTFDETRNSWFPHISPDGKSVIFITYYKGDLEPEQHLPNKNVELRIMPATGGEPKTLV 268 Query: 388 E----DSNLQAPTWSPSGRSLIFSRKK 410 + + +W+P R + F + Sbjct: 269 KLFGGQGTINVNSWAPDSRRVAFVSYR 295 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 16/244 (6%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--IL 261 R + + P ++P+ + + Y + ++Y + P+ I + Sbjct: 32 RTVVKEFPYRIEAPNWTPDGRWLVYNS-----GGKLYKLSPDSPGEPEMINTGFATRCNN 86 Query: 262 APRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +++GK+ IS ++D IY++ +Q +T + + +SPD Q+ + Sbjct: 87 DHVIAADGKQIAISHGTKEDGKSRIYTLPMQGGTPRLIT-PIAPSYLHGWSPDGRQLAYC 145 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +DR+G +YV+ G ++ R++ E P +SP G+ I F + MKKD Sbjct: 146 ADRKGNYDIYVIPVEGGEEIRLTT-AEGLDDGPEYSPCGEYIWFNSVRTGLMQVWRMKKD 204 Query: 380 GSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 GS++ + E N P SP G+S+IF GD + + + +N L PA Sbjct: 205 GSEQTQMTFDETRNSWFPHISPDGKSVIFITYYKGDLEPEQHLPN---KNVELRIMPATG 261 Query: 438 SDPQ 441 +P+ Sbjct: 262 GEPK 265 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 14/210 (6%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 A+ + + + + + F I AP ++ +G+ + + +Y + Sbjct: 11 ASAQQNGVTSILEVLDVTNGRRTVVKEFPYRIEAPNWTPDGRWLVY----NSGGKLYKLS 66 Query: 289 LQSNATERLTNTLFI---NISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQ 343 S + NT F N + D QI + +GK ++Y + G + I+ Sbjct: 67 PDSPGEPEMINTGFATRCNNDHVIAADGKQIAISHGTKEDGKSRIYTLPMQGGTPRLITP 126 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGR 402 A + WSP G +A+ + I V+ +G +E RL + P +SP G Sbjct: 127 I--APSYLHGWSPDGRQLAYCADRKGNYDIYVIPVEGGEEIRLTTAEGLDDGPEYSPCGE 184 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + F+ + G +++ + +G +T + Sbjct: 185 YIWFNSVRTGLM--QVWRMKKDGSEQTQMT 212 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 18/154 (11%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V+ +G LT + + P +SP + + + + +++V+ M Sbjct: 149 KGNYDIYVIPVEGGEEIRLTT-AEGLDDGPEYSPCGEYIWFNSVRTG-LMQVWRMKKDGS 206 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATER 296 + + P S +GK + +++ + + Sbjct: 207 EQTQMTFDETRNSWFPHISPDGKSVIFITYYKGDLEPEQHLPNKNVELRIMPATGGEPKT 266 Query: 297 LTNTLF----INISASYSPDSSQIVFESDREGKE 326 L IN++ S++PDS ++ F S R Sbjct: 267 LVKLFGGQGTINVN-SWAPDSRRVAFVSYRLSSP 299 >gi|317012904|gb|ADU83512.1| translocation protein TolB [Helicobacter pylori Lithuania75] Length = 417 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLIYTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVDTG 111 Query: 137 KQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + S + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|15612120|ref|NP_223772.1| translocation protein TolB [Helicobacter pylori J99] gi|32699722|sp|Q9ZK86|TOLB_HELPJ RecName: Full=Protein tolB; Flags: Precursor gi|4155646|gb|AAD06634.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Helicobacter pylori J99] Length = 417 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLIYAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVDTG 111 Query: 137 KQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + S + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGEKTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLIALNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTSQEYAMGLILLDYN 400 >gi|145638707|ref|ZP_01794316.1| translocation protein TolB precursor [Haemophilus influenzae PittII] gi|145272302|gb|EDK12210.1| translocation protein TolB precursor [Haemophilus influenzae PittII] Length = 189 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 +K + + +++ V++ + IA FV +S++V+ D Sbjct: 4 LKRLVSVFAIVLAVGSNAFAGDEVRIVIDEGVDGARPIAVLPFVG--SAPEDISKIVADD 61 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L+ S FN I+ Q T+ + + W+++G +V G+V+ G + ++L D Sbjct: 62 LRNSGKFNPIAVSQMPQHPTSVAEV-NPEAWSNIGIDAIVIGQVVPSGNG-YSITYQLID 119 Query: 133 VKD-----RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++ + + R AHT+SD++++ +T +G F +RI +V + G Sbjct: 120 TVGASGTPGAVLMQNSYTVTNKWLRYGAHTVSDEVFEKLTAIRGAFRTRIAYVVQKN-GG 178 Query: 188 IIKNSLCV 195 + V Sbjct: 179 SQPYEVRV 186 >gi|210135286|ref|YP_002301725.1| translocation protein TolB [Helicobacter pylori P12] gi|210133254|gb|ACJ08245.1| translocation protein TolB [Helicobacter pylori P12] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 138/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + ++ V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + S + AH ++ + + + R++ S+ Sbjct: 100 IS-RLKLYDVDTGTLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|317014513|gb|ADU81949.1| translocation protein TolB [Helicobacter pylori Gambia94/24] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLIYAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVDTG 111 Query: 137 KQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + S + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|15645740|ref|NP_207917.1| translocation protein TolB [Helicobacter pylori 26695] gi|32699689|sp|O25751|TOLB_HELPY RecName: Full=Protein tolB; Flags: Precursor gi|2314279|gb|AAD08170.1| colicin tolerance-like protein (tolB) [Helicobacter pylori 26695] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 138/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + ++ V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + S + AH ++ + + + R++ S+ Sbjct: 100 IS-RLKLYDVDTGTLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|307637796|gb|ADN80246.1| tolB protein precursor [Helicobacter pylori 908] gi|325996394|gb|ADZ51799.1| tolB protein precursor [Helicobacter pylori 2018] gi|325997982|gb|ADZ50190.1| Translocation protein [Helicobacter pylori 2017] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLIYAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVDTG 111 Query: 137 KQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + S + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|308183231|ref|YP_003927358.1| translocation protein TolB [Helicobacter pylori PeCan4] gi|308065416|gb|ADO07308.1| translocation protein TolB [Helicobacter pylori PeCan4] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 137/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + ++ V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + RL+DV + + AH ++ + + + R++ S+ Sbjct: 100 IS-RLRLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|307720702|ref|YP_003891842.1| WD40 domain-containing protein beta Propeller [Sulfurimonas autotrophica DSM 16294] gi|306978795|gb|ADN08830.1| WD40 domain protein beta Propeller [Sulfurimonas autotrophica DSM 16294] Length = 416 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 63/416 (15%), Positives = 168/416 (40%), Gaps = 27/416 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 MKI L + L+G F + A ++V + + +++ D + + + D Sbjct: 1 MKIFFSLFI-LVGLLF--ASDATIEVVKKADSLPSMAVEDASISYDDTFKLRFFKSLVAD 57 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L +FN +++ + + + +D + ++ ++ ++ L +E +L++ Sbjct: 58 LNVISLFN-VNRHHRLANYNDTNVLVENKDMS-----YVLRYKMFEDDNRALNIEMKLFN 111 Query: 133 VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 +++ K++ + + + I+H ++ DI + + ++ R + + + K+ Sbjct: 112 --RDEEVFSKRYRVNKKNIYMFISHAMAYDINEFMGEPSVEWMKRKVIFARIIAP--KKS 167 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + D + + + P+++ Q Y T D + +D + + K Sbjct: 168 EIIIADYTLSYQHVIIKG--GLDIFPKWANKAQNAFYYTSLDPLKPTLKYVDIKTAK-VK 224 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 I + M++ S +GK L+++ ++ DIY + + +R+T I+++ + Sbjct: 225 NIISSDGMMVCSDVSEDGKSILLTMARNGQPDIYLYNTTTKKYKRITTYSGIDVNGQFMG 284 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 D ++I+F S R G ++ + + +++ +++ S QG I + Sbjct: 285 D-NKIIFISSRLGYPNVFSKRLDTGIVEQMVYYGKSNSSC---SAQGQYIVYEARESSNA 340 Query: 371 -----FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F + ++ R L + P +S G ++IF + + + + Sbjct: 341 FSVNTFNLHLISTKTDFIRRLTATGINEFPRFSKDGDAIIFIKNYKSQSAIGIIRL 396 >gi|217032686|ref|ZP_03438172.1| hypothetical protein HPB128_202g20 [Helicobacter pylori B128] gi|298735870|ref|YP_003728395.1| TolB protein [Helicobacter pylori B8] gi|216945616|gb|EEC24267.1| hypothetical protein HPB128_202g20 [Helicobacter pylori B128] gi|298355059|emb|CBI65931.1| TolB protein [Helicobacter pylori B8] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 61/369 (16%), Positives = 140/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + + Q++ V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SQNKDQGVINYAELKDKKVQLVALVSVALENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKF-FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + S + AH ++ + + + R++ S+ Sbjct: 100 IS-RLKLYDVDTGTLKKTFDYPIVSLDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|254779678|ref|YP_003057784.1| translocation protein TolB [Helicobacter pylori B38] gi|254001590|emb|CAX29649.1| TonB-independent protein-uptake protein [Helicobacter pylori B38] Length = 417 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 67/416 (16%), Positives = 149/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLISAIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVALENGNKIS-RLKLYDVDTE 111 Query: 137 KQIIGKKFFS-SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + S + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSTDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D I + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSIVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|88859959|ref|ZP_01134598.1| hypothetical protein PTD2_18145 [Pseudoalteromonas tunicata D2] gi|88817953|gb|EAR27769.1| hypothetical protein PTD2_18145 [Pseudoalteromonas tunicata D2] Length = 1061 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + + S +GK + + D IY++ +LT+ + + +SP Sbjct: 47 KIAVEQGTWMNIDVSPDGKTIVFDLLGD----IYTMPFSGGKATQLTSDIAWQMQPRFSP 102 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKF 366 D I F SD +G + ++VM +G + K ++++ P WSP GD I Sbjct: 103 DGKSIAFTSDADGGDNIWVMDVDGQNAKAVTKETFRLLNSPAWSPDGDFIIARKHFTASR 162 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + K G L + N Q P +SP GR + FS D+ Sbjct: 163 SLGAGEVWLYHKAGGNGVQLTKRENDQKDLGEPAFSPDGRYVYFSHDATPGKTFHYSKDS 222 Query: 415 GSKLYSIDL----NGRNETLINTPAYASDPQ 441 +Y I G ET+I+ A P Sbjct: 223 VDGIYKIKRYDRQTGEIETIISGMGGAIRPT 253 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 94/234 (40%), Gaps = 30/234 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + D +Y M ++ + + + PRFS +GK + D Sbjct: 61 SPDGKTIVFDLLGD-----IYTMP-FSGGKATQLTSDIAWQMQPRFSPDGKSIAFTSDAD 114 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ +D+ + +T F + S ++SPD I+ F + R G ++++ Sbjct: 115 GGDNIWVMDVDGQNAKAVTKETFRLLNSPAWSPDGDFIIARKHFTASRSLGAGEVWLYHK 174 Query: 334 NGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMKK 378 G + ++++ + +P +SP G + F+ + + I + Sbjct: 175 AGGNGVQLTKRENDQKDLGEPAFSPDGRYVYFSHDATPGKTFHYSKDSVDGIYKIKRYDR 234 Query: 379 DGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + E ++ PT SP G++L + ++ D S LY DL T + Sbjct: 235 QTGEIETIISGMGGAIRPTPSPDGKTLAYIKRD--DFQSSLYLYDLATGQHTKV 286 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 97/292 (33%), Gaps = 42/292 (14%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 I E+G + + + + + + M G LT S +PRFSP+ + Sbjct: 47 KIAVEQGTWMNIDVSPDGKTIVFDLLGDIYTMPFSGGKATQLT-SDIAWQMQPRFSPDGK 105 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD- 279 +A+ + D + +++MD A ++ +P +S +G + + + Sbjct: 106 SIAFTS-DADGGDNIWVMDVDGQNAKAVTKETFRLLNSPAWSPDGDFIIARKHFTASRSL 164 Query: 280 EAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDR-------------E 323 A +++ +LT N ++SPD + F D + Sbjct: 165 GAGEVWLYHKAGGNGVQLTKRENDQKDLGEPAFSPDGRYVYFSHDATPGKTFHYSKDSVD 224 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G ++ + + I P SP G +A+ K + ++ + Q Sbjct: 225 GIYKIKRYDRQTGEIETIIS-GMGGAIRPTPSPDGKTLAYIKRDDFQSSLYLYDLATGQH 283 Query: 384 RLLVE------------DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + W+P + L+F G K++ +D+ Sbjct: 284 TKVYGAMERDMQETWAIHGVYPTMAWTPDNKGLVFWA------GGKIHQVDV 329 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 20/201 (9%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQ 277 SP+ + + ++YL D + + P FS +GK+ S Q Sbjct: 372 ISPDGETAIFEAMG-----KIYLRDLDSGKIKPLTKSSAGFQFFPTFSRDGKQVAFVSWQ 426 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQL 328 DE ++ V +S + L + +SPD +VF R G + Sbjct: 427 DDEQSQLHVVSTRSGKGKTLLKEKGKFVEPVFSPDGKTVVFRKVRGGAILDPDFSLNPGI 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + S G D + I + E F D I + GEK ++ ++ + + + L E Sbjct: 487 YKVPSTGGDAELIFKQGEQPQFGK----DNDKI-YVLGIGEKPSLSMIDLNTKKAQKLYE 541 Query: 389 DSNLQAPTWSPSGRSLIFSRK 409 SP R L F+ + Sbjct: 542 SELATEFRISPDSRYLAFAER 562 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 107/326 (32%), Gaps = 60/326 (18%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ--ILFEPRFSPNQQK 225 GDF I + + + + + G N LT + L EP FSP+ + Sbjct: 146 SPDGDFI--IARKHFTASRSLGAGEVWLYHKAGGNGVQLTKRENDQKDLGEPAFSPDGRY 203 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 V ++ Y D+ R + I + + P S +GK Sbjct: 204 VYFSHDATPGKTFHYSKDSVDGIYKIKRYDRQTGEIETIISGMGGAIRPTPSPDGKTLAY 263 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDRE 323 + D +Y DL + ++ + ++ +++PD+ +VF + Sbjct: 264 IKRDDFQSSLYLYDLATGQHTKVYGAMERDMQETWAIHGVYPTMAWTPDNKGLVFWA--- 320 Query: 324 GKEQLYVMQSNGSDQKRISQDKEAS----------------------YFDPVWSPQGDLI 361 +++ + I+ E S + SP G+ Sbjct: 321 -GGKIHQVDVKTKQASEIAFKVETSKKMQKALRFAQNIDTPEFDVKMLRNVQISPDGETA 379 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 F I + D + + L + PT+S G+ + F +D D S+L+ Sbjct: 380 IFEAMG----KIYLRDLDSGKIKPLTKSSAGFQFFPTFSRDGKQVAFVSWQD-DEQSQLH 434 Query: 420 SIDL-NGRNETLINTPAYASDPQWVG 444 + +G+ +TL+ +P + Sbjct: 435 VVSTRSGKGKTLLKEKGKFVEPVFSP 460 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 61/367 (16%), Positives = 120/367 (32%), Gaps = 73/367 (19%) Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 ++G + + + A ++ DI + I F S++ + VMD Sbjct: 71 LLGDIYTMPFSGGK--ATQLTSDIAWQMQPRFSPDGKSIAFTSDADGGDN----IWVMDV 124 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRI- 253 DG N + +T ++L P +SP+ + + V+L + Sbjct: 125 DGQNAKAVTKETFRLLNSPAWSPDGDFIIARKHFTASRSLGAGEVWLYHKAGGNGVQLTK 184 Query: 254 -GNFRSMILAPRFSSNGKRALISV-------------QKDEAMDIYSVDLQSNATERLTN 299 N + + P FS +G+ S D I D Q+ E + + Sbjct: 185 RENDQKDLGEPAFSPDGRYVYFSHDATPGKTFHYSKDSVDGIYKIKRYDRQTGEIETIIS 244 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----------SQDKEASY 349 + I + SPD + + + + LY+ ++ + Y Sbjct: 245 GMGGAIRPTPSPDGKTLAYIKRDDFQSSLYLYDLATGQHTKVYGAMERDMQETWAIHGVY 304 Query: 350 FDPVWSPQGDLIAFTKFSGEKFA------------IGVMKKDGSQERLLVEDSNLQAPTW 397 W+P + F ++G K ++ ++ L N+ P + Sbjct: 305 PTMAWTPDNKGLVF--WAGGKIHQVDVKTKQASEIAFKVETSKKMQKALRFAQNIDTPEF 362 Query: 398 ----------SPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINT-------PAYASD 439 SP G + IF + K+Y DL+ G+ + L + P ++ D Sbjct: 363 DVKMLRNVQISPDGETAIF------EAMGKIYLRDLDSGKIKPLTKSSAGFQFFPTFSRD 416 Query: 440 PQWVGFM 446 + V F+ Sbjct: 417 GKQVAFV 423 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 90/273 (32%), Gaps = 53/273 (19%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN----------FRS 258 S P SP+ + +AY DD +YL D + K G Sbjct: 244 SGMGGAIRPTPSPDGKTLAYIKRDDFQS-SLYLYDLATGQHTKVYGAMERDMQETWAIHG 302 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT--------------ERLTNTLFIN 304 + ++ + K + I+ VD+++ + L I+ Sbjct: 303 VYPTMAWTPDNKGLVFWA----GGKIHQVDVKTKQASEIAFKVETSKKMQKALRFAQNID 358 Query: 305 ISASY----------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + SPD +FE+ ++Y+ + K +++ F P + Sbjct: 359 T-PEFDVKMLRNVQISPDGETAIFEA----MGKIYLRDLDSGKIKPLTKSSAGFQFFPTF 413 Query: 355 SPQGDLIAFTK-FSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 S G +AF E+ + V+ G + LL E P +SP G++++F + + G Sbjct: 414 SRDGKQVAFVSWQDDEQSQLHVVSTRSGKGKTLLKEKGKFVEPVFSPDGKTVVFRKVRGG 473 Query: 413 -------DTGSKLYSIDLNGRNETLINTPAYAS 438 +Y + G + LI Sbjct: 474 AILDPDFSLNPGIYKVPSTGGDAELIFKQGEQP 506 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 + ++ + SP G I F I M G + L D Q P +SP G+S+ Sbjct: 52 QGTWMNIDVSPDGKTIVFDLLGD----IYTMPFSGGKATQLTSDIAWQMQPRFSPDGKSI 107 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 F+ DG G ++ +D++G+N + + + P W Sbjct: 108 AFTSDADG--GDNIWVMDVDGQNAKAVTKETFRLLNSPAWSP 147 Score = 36.9 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDP 440 ++ VE SP G++++F D +Y++ +G T + + A+ P Sbjct: 45 DAKIAVEQGTWMNIDVSPDGKTIVF------DLLGDIYTMPFSGGKATQLTSDIAWQMQP 98 Query: 441 QWVG 444 ++ Sbjct: 99 RFSP 102 >gi|119469520|ref|ZP_01612424.1| hypothetical protein ATW7_06673 [Alteromonadales bacterium TW-7] gi|119447055|gb|EAW28325.1| hypothetical protein ATW7_06673 [Alteromonadales bacterium TW-7] Length = 1061 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 26/237 (10%) Query: 227 AYATYDDEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 A+A D+ + + +D+ + +I + + S +GK + + D IY Sbjct: 20 AHAESTDKKDEQKWQVDSPKGQFVDAKISVEQGTWMNIDISPDGKTIVFDLLGD----IY 75 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++ + +LT+ + + +SPD I F SD+ G + ++VM NG +Q ++ + Sbjct: 76 TMPMSGGTATQLTSDIAWQMQPRFSPDGKHIAFTSDQGGGDNIWVMDLNGENQSAVTNET 135 Query: 346 EASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ----APT 396 P WSP GD + S + + K G + L + N Q P Sbjct: 136 FRLLNSPAWSPDGDFLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPM 195 Query: 397 WSPSGRSLIFSRK--------KDGDTGSKLYSIDL----NGRNETLINTPAYASDPQ 441 +SP GR + FS D+ + +Y I G ET+I+ A P Sbjct: 196 FSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYDRETGEIETIIDGMGGAIRPT 252 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 108/321 (33%), Gaps = 50/321 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILF-EPRFSPNQQK 225 GDF + + + + + G ++ DQ EP FSP+ + Sbjct: 145 SPDGDFL--VARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPMFSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 V ++ Y D+ R + I + + P S +GK Sbjct: 203 VYFSHDATPGKTFHYSKDSVAGIYKIKRYDRETGEIETIIDGMGGAIRPTPSPDGKTLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS-----------PDSSQIVF----- 318 + D +Y DL + ++ + L ++ +++ PD+ ++VF Sbjct: 263 IKRDDFQTSLYLYDLSTGEHTQVYDKLERDMQETWAIHGVYPTIAWTPDNKELVFWAGGK 322 Query: 319 -----ESDREGKEQLYVMQSNGSDQK--RISQDKEASYF------DPVWSPQGDLIAFTK 365 +D+ + +++ Q R +Q+ + F + SP G+ F Sbjct: 323 IQSVDVTDKSVTPIAFKVETTKKIQPALRFTQNLDTDEFDVKMLRNVQVSPDGETAIFEA 382 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I + + + L + ++ P +S G+ ++++ D G Sbjct: 383 LG----YIYKRDLESGKIKRLTKQTDHFELFPQYSRDGKKIVYTTWSDNKQGQVRVVSSR 438 Query: 424 NGRNETLINTPAYASDPQWVG 444 +GR +T+ P +P + Sbjct: 439 SGRGDTITQEPGKYVEPTFSP 459 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 97/300 (32%), Gaps = 52/300 (17%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + DR+ I + + P SP+ + +AY DD +Y Sbjct: 216 HYSKDSVAGIYKIKRYDRETGEIETIIDGMGGAI-RPTPSPDGKTLAYIKRDDFQT-SLY 273 Query: 241 LMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 L D + + ++ + K + I SVD+ Sbjct: 274 LYDLSTGEHTQVYDKLERDMQETWAIHGVYPTIAWTPDNKELVFWA----GGKIQSVDVT 329 Query: 291 SNATE----------------RLTNTLFIN-------ISASYSPDSSQIVFESDREGKEQ 327 + R T L + + SPD +FE+ Sbjct: 330 DKSVTPIAFKVETTKKIQPALRFTQNLDTDEFDVKMLRNVQVSPDGETAIFEA----LGY 385 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMK-KDGSQERL 385 +Y KR+++ + P +S G I +T +S K + V+ + G + + Sbjct: 386 IYKRDLESGKIKRLTKQTDHFELFPQYSRDGKKIVYTTWSDNKQGQVRVVSSRSGRGDTI 445 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGRNETLINTPAYAS 438 E PT+SP+G+++++ + G +YS+ G LI+ Y Sbjct: 446 TQEPGKYVEPTFSPNGKTVVYRKASGGSILNPKWSLNPGIYSVSAKGGKSELISKSGYQP 505 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 106/282 (37%), Gaps = 40/282 (14%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD--GANIRYLTPSRDQILFEPRFSPNQQ 224 T E R + VS + I + + RD I+ LT D P++S + + Sbjct: 358 TDEFDVKMLRNVQVSPDGETAIFEALGYIYKRDLESGKIKRLTKQTDHFELFPQYSRDGK 417 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE---- 280 K+ Y T+ D +V ++ +R R I + P FS NGK + Sbjct: 418 KIVYTTWSDNKQGQVRVVSSRSGRGDT-ITQEPGKYVEPTFSPNGKTVVYRKASGGSILN 476 Query: 281 -----AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 IYSV + +E ++ + + + D+ + VF K L V++ Sbjct: 477 PKWSLNPGIYSVSAKGGKSELISKSGY---QPQFGADNDR-VFVMSPWPKPSLSVVELES 532 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 ++ + + A+ F SP G+ +AF E+F + V S + + + + + P Sbjct: 533 KKVSKLYESEHATEF--RVSPDGEYLAFA----ERFKVYVTPLVESGKAINIGPKDSKFP 586 Query: 396 ------------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +WS L ++ G +LY LNG Sbjct: 587 IEQLSVRAGESISWSADSSKLYWT------LGPELYHASLNG 622 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 39/221 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++P+ +++ + + I V + D + ++ + + A RF Sbjct: 307 AWTPDNKELVF--WAGGKIQSVDVTDKSVTPIAFKVETTKKIQPALRFTQNLDTDEFDVK 364 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIV 317 S +G+ A+ IY DL+S +RLT T + YS D +IV Sbjct: 365 MLRNVQVSPDGETAIFEA----LGYIYKRDLESGKIKRLTKQTDHFELFPQYSRDGKKIV 420 Query: 318 FESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----- 371 + + + K+ Q+ V+ S I+Q+ Y +P +SP G + + K SG Sbjct: 421 YTTWSDNKQGQVRVVSSRSGRGDTITQE-PGKYVEPTFSPNGKTVVYRKASGGSILNPKW 479 Query: 372 ----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 I + G + L+ + P + + Sbjct: 480 SLNPGIYSVSAKGGKSELISKSGYQ--PQFGADNDRVFVMS 518 >gi|297162553|gb|ADI12265.1| amidohydrolase [Streptomyces bingchenggensis BCW-1] Length = 1056 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 95/204 (46%), Gaps = 11/204 (5%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + ++I ++ + S +G+ ++ D ++++ Q RLT+ Sbjct: 43 TEGDTRQITVGQATNASAALSPDGRTIVM----DLLNLLWTLPAQGGEATRLTDIDKEAS 98 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +SPD ++V++S +G L++ +++GS+ +R++ + + + +P +SP G IA+ Sbjct: 99 EPDFSPDGRRLVYQSYADGNFHLWLARADGSEARRLT-EGDIDHREPRFSPDGKRIAYAA 157 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + +AI V+ D + + ++ P W P ++++F+ K GD + + Sbjct: 158 ETDGHYAIHVLDLDSGESKRWTSGTDATVQETQPFWRPDSKAIVFTSGK-GDAPQSVVQV 216 Query: 422 DLNGRNETLIN-TPAYASDPQWVG 444 D +G+ TL+ T + P Sbjct: 217 DADGKLTTLVTVTEGRVAGPSLSP 240 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 82/256 (32%), Gaps = 37/256 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + D+L + R+ + P FS +G+R + Sbjct: 61 ALSPDGRTIV------MDLLNLLWTLPAQGGEATRLTDIDKEASEPDFSPDGRRLVYQSY 114 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 D ++ + RLT + +SPD +I + ++ +G ++V+ + + Sbjct: 115 ADGNFHLWLARADGSEARRLTEGDIDHREPRFSPDGKRIAYAAETDGHYAIHVLDLDSGE 174 Query: 338 QKRISQDKEASY--FDPVWSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLV-EDSNLQ 393 KR + +A+ P W P I FT G+ V DG L+ + + Sbjct: 175 SKRWTSGTDATVQETQPFWRPDSKAIVFTSGKGDAPQSVVQVDADGKLTTLVTVTEGRVA 234 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKL------------------------YSIDLNGRNET 429 P+ SP G L + G + +G+ Sbjct: 235 GPSLSPDGTKLAYVHLTSSSAGLVVDGKVVSGDGEEVFPFAARWPSDDEVFYTADGKIRR 294 Query: 430 LINTPAYASDPQWVGF 445 T D + F Sbjct: 295 RPVTGGSVKD---IPF 307 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 105/320 (32%), Gaps = 73/320 (22%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPK 251 L + DG+ R LT D EPRFSP+ +++AYA D + V +D+ + Sbjct: 121 LWLARADGSEARRLTEG-DIDHREPRFSPDGKRIAYAAETDGHYAIHVLDLDSGESKRWT 179 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS-VDLQSNATERLTNTLFINISASYS 310 + P + + K + + K +A VD T +T T S S Sbjct: 180 SGTDATVQETQPFWRPDSKAIVFTSGKGDAPQSVVQVDADGKLTTLVTVTEGRVAGPSLS 239 Query: 311 PDSSQIVF---ESDREG-----------------------KEQLYVMQSNGSDQKRISQD 344 PD +++ + S G + ++G ++R Sbjct: 240 PDGTKLAYVHLTSSSAGLVVDGKVVSGDGEEVFPFAARWPSDDEVFYTADGKIRRRPVTG 299 Query: 345 KEA--------------------------------SYFDPVWSPQGDLIAFTKFSGEKFA 372 P SP G +AF Sbjct: 300 GSVKDIPFAVHLTVPRVPERSAPRDFDSTAPRKVKGIVGPSLSPDGKQVAFAALGD---- 355 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLI 431 I V + + + ++ + + P W P G +L++ + G + L+ DL +G N L Sbjct: 356 IWVGRIGSTPKAVVSDGNINSDPAWHPDGSTLVYVSDRGGH-AADLWLHDLESGENRRLT 414 Query: 432 N------TPAYASDPQWVGF 445 N P +A D + V F Sbjct: 415 NLQGQLFGPVFAPDGKTVAF 434 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 30/241 (12%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S I +P + P+ + Y + ++L D +R+ N + + P F+ + Sbjct: 370 SDGNINSDPAWHPDGSTLVYVSDRGGHAADLWLHDLESGEN-RRLTNLQGQLFGPVFAPD 428 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ-------IVFESD 321 GK S + + +VD+ S A +T A++S D ++ Sbjct: 429 GKTVAFSFW---SAIVQAVDVASGAVRTVTPVGAN--RATFSADGTKLSCAALMPATPRY 483 Query: 322 REGKEQLYVMQSNGSDQ---KRISQDKEAS--YFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 REG ++ + + + + A+ PV SP G A+ G + + Sbjct: 484 REGSNRILTIDLTSGETHYDEPVPGKSLANRIDAGPVHSPDGTYTAYVL--GGTVHLSAL 541 Query: 377 KKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 G R L P+WS G+SL++ +L D+ T + T Sbjct: 542 DSAGRPTGAARKL-NGETADCPSWSADGQSLLYLSN------GRLRLADVRTGRATTVPT 594 Query: 434 P 434 Sbjct: 595 G 595 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 113/345 (32%), Gaps = 91/345 (26%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + G S+ +D DG + L + + P SP+ K+AY V Sbjct: 200 IVFTSGKGDAPQSVVQVDADGK-LTTLVTVTEGRVAGPSLSPDGTKLAYVHLTSSSAGLV 258 Query: 240 ---------------------------YLMDTRIDRAPKRIGNFRSMILA---------- 262 Y D +I R P G+ + + A Sbjct: 259 VDGKVVSGDGEEVFPFAARWPSDDEVFYTADGKIRRRPVTGGSVKDIPFAVHLTVPRVPE 318 Query: 263 --------------------PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 P S +GK+ + D V + + + + Sbjct: 319 RSAPRDFDSTAPRKVKGIVGPSLSPDGKQVAFAALGD-----IWVGRIGSTPKAVVSDGN 373 Query: 303 INISASYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 IN ++ PD S +V+ SDR G L++ + +R++ + + F PV++P G + Sbjct: 374 INSDPAWHPDGSTLVYVSDRGGHAADLWLHDLESGENRRLT-NLQGQLFGPVFAPDGKTV 432 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS-------RKKDGDT 414 AF+ +S + + R + +A T+S G L + R ++G Sbjct: 433 AFSFWSA---IVQAVDVASGAVRTVTPVGANRA-TFSADGTKLSCAALMPATPRYREGSN 488 Query: 415 GSKLYSIDLNGRNE-------------TLINTPAYASDPQWVGFM 446 ++ +IDL + P ++ D + ++ Sbjct: 489 --RILTIDLTSGETHYDEPVPGKSLANRIDAGPVHSPDGTYTAYV 531 >gi|207093087|ref|ZP_03240874.1| translocation protein TolB [Helicobacter pylori HPKX_438_AG0C1] Length = 395 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 138/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + Q++ V E ++ Sbjct: 26 KLHEVLANDLRTSQHFDV--------SQNKDQGAINYAELKDKKFQLVALVSVALENGNK 77 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + + AH ++ + + + R++ S+ Sbjct: 78 IS-RLKLYDVDTETLKKTFDYPIVSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 136 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 137 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 193 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 194 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 252 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 253 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 309 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 310 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYA 369 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 370 MGLILLDYN 378 >gi|163786907|ref|ZP_02181355.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1] gi|159878767|gb|EDP72823.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1] Length = 368 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 119/301 (39%), Gaps = 61/301 (20%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDE------DILRVYLMDTRIDRA-PKRIGN 255 IR +T D +S + +++ + + + + + + +T D P I Sbjct: 50 IRQVTYGGDNAEAY--WSFDDKQLVFQSNNVKWDVGCDQMFLMNANETFTDSIAPPMIST 107 Query: 256 FRSMILAPRFSSNGKRALIS-------------VQKDE--------AMDIYSVDLQSNAT 294 + F + K + + ++K+ + DI+ DL+ N Sbjct: 108 GKGRTTCAYFLPDNKHIIYASTHLKQDKCPDTPLRKNGKYIWPIYDSYDIFVADLEGNIV 167 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 ++LTN + + + SP +IVF S R G +LY M +GSD K+I+ + + Sbjct: 168 KQLTNEVGYDAEPTVSPKGDKIVFTSTRSGDLELYTMNIDGSDVKQITNEL-GYDGGAFF 226 Query: 355 SPQGDLIAFTKFSGE--------------------KFAIGVMKKDGSQERLLVEDSN-LQ 393 SP G + F + + + + DGS R L + N Sbjct: 227 SPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPTEMELYICNADGSDLRQLTDLGNANW 286 Query: 394 APTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLINT-------PAYASDPQWVG 444 +P + PSG ++FS + + G LY ID++G+N + P ++++ +++ Sbjct: 287 SPFFHPSGEKILFSSNFEAERGFPFNLYLIDIDGKNLKRVTHGETFDAFPVFSNNGKYLA 346 Query: 445 F 445 F Sbjct: 347 F 347 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 118/292 (40%), Gaps = 53/292 (18%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDR-----DGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 + +++F S +V + + + +M+ D ++ + + F P+ + + Y Sbjct: 68 DKQLVFQSNNVKWDVGCDQMFLMNANETFTDSIAPPMISTGKGRTTCA-YFLPDNKHIIY 126 Query: 229 ATYDDE--------------------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 A+ + D +++ D K++ N P S Sbjct: 127 ASTHLKQDKCPDTPLRKNGKYIWPIYDSYDIFVADLE-GNIVKQLTNEVGYDAEPTVSPK 185 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 G + + + + +++Y++++ + +++TN L + A +SPD ++++F S R Sbjct: 186 GDKIVFTSTRSGDLELYTMNIDGSDVKQITNELGYDGGAFFSPDGTKLIFRSSRPKTEKE 245 Query: 326 -----------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 +LY+ ++GSD ++++ A++ P + P G+ I F+ Sbjct: 246 IKDYKDLLAEGLVEPTEMELYICNADGSDLRQLTDLGNANW-SPFFHPSGEKILFSSNFE 304 Query: 367 --SGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTG 415 G F + ++ DG + + A P +S +G+ L FS ++ G Sbjct: 305 AERGFPFNLYLIDIDGKNLKRVTHGETFDAFPVFSNNGKYLAFSSNRNNGGG 356 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 79/268 (29%), Gaps = 53/268 (19%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDI 284 T + + R + +S + K+ + + Sbjct: 28 TTTGATKSIESLIYPEETHFKSIRQVTYGGDNAEAYWSFDDKQLVFQSNNVKWDVGCDQM 87 Query: 285 YSVDL-----QSNATERLTNTLFINISASYSPDSSQIVFESDR-------------EGK- 325 + ++ S A ++ A + PD+ I++ S GK Sbjct: 88 FLMNANETFTDSIAPPMISTGKGRTTCAYFLPDNKHIIYASTHLKQDKCPDTPLRKNGKY 147 Query: 326 -------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 ++V G+ K+++ + +P SP+GD I FT + M Sbjct: 148 IWPIYDSYDIFVADLEGNIVKQLTNE-VGYDAEPTVSPKGDKIVFTSTRSGDLELYTMNI 206 Query: 379 DGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG------------------DTGSKLY 419 DGS + + + +SP G LIF + T +LY Sbjct: 207 DGSDVKQITNELGYDGGAFFSPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPTEMELY 266 Query: 420 SIDLNGRNETLINTPAYASDPQWVGFMD 447 + +G + + A+ W F Sbjct: 267 ICNADGSDLRQLTDLGNAN---WSPFFH 291 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 30/172 (17%) Query: 69 VSKDLQRSD--VFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 ++ +L F+ + + P + +D+ +L G V Sbjct: 214 ITNELGYDGGAFFSP-DGTKLIFRSSRPKTEKEIKDYK----DLLAEGLVEPT------- 261 Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 E L+ + + A+W H G+ +ILF S Sbjct: 262 EMELYICNADGSDLRQLTDLGNANWSPFFH------------PSGE---KILFSSNFEAE 306 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +L ++D DG N++ +T + P FS N + +A+++ + R Sbjct: 307 RGFPFNLYLIDIDGKNLKRVTHG-ETFDAFPVFSNNGKYLAFSSNRNNGGGR 357 >gi|257055979|ref|YP_003133811.1| periplasmic component of the Tol biopolymer transport system [Saccharomonospora viridis DSM 43017] gi|256585851|gb|ACU96984.1| periplasmic component of the Tol biopolymer transport system [Saccharomonospora viridis DSM 43017] Length = 1059 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 131/361 (36%), Gaps = 53/361 (14%) Query: 108 AQVLVTGRVIKEGKDRL----------------RVEFRLWDVKDRKQ---IIGKKFFSSP 148 A ++V GRV+ EG+D R+ D+ + F Sbjct: 248 ADLVVDGRVVTEGEDVFLFAAEWLDDHRLLYTADGALRIRDLAEGTTRDVPFEATFELPR 307 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +R+ H D + G + +L V+ + N L +M DG R LT Sbjct: 308 VDYRRKEHDFDDRSRHRVRGI----LTPVLSPDARQVAFVALNDLWLMPLDGT-PRRLTH 362 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 R P FSP+ + +AYA D +Y+ D R R +R+ ++P FS + Sbjct: 363 DR-FAESNPVFSPDGRYLAYAA-DRAGTPDLYVRDLRTGRE-RRVTALDGAEVSPAFSPD 419 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-------D 321 G++ +D+ Y +DL++ +L LF S+S D + F + Sbjct: 420 GRKLAF---QDQDGATYVLDLRTGRVRQLVPPLFGPGRPSWSADGKTLAFVAVKPYSARF 476 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEAS------YFDPVWSPQGDLIAFTKFSGEKFAIGV 375 REG Q+ + Q + E + PVWSP G +AF I Sbjct: 477 REGTSQILTVDVVTGKQTYHAPGGEHASISTRGDDGPVWSPDGRQVAFV--VDSTLRIMP 534 Query: 376 MKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + DG+ + AP+WS GR L++ L D+ ++ Sbjct: 535 VAADGTPRGPARELNGEVADAPSWSGDGRRLLYLSN------GTLRLADVTTGKARDVDV 588 Query: 434 P 434 P Sbjct: 589 P 589 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 32/255 (12%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + R + + P SP+ ++VA+ +D L +D P+R+ + R P FS Sbjct: 321 SRHRVRGILTPVLSPDARQVAFVALND-------LWLMPLDGTPRRLTHDRFAESNPVFS 373 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+ + + D+Y DL++ R+T +S ++SPD ++ F+ D++G Sbjct: 374 PDGRYLAYAADRAGTPDLYVRDLRTGRERRVTALDGAEVSPAFSPDGRKLAFQ-DQDGAT 432 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKD 379 YV+ +++ P WS G +AF +F I + Sbjct: 433 --YVLDLRTGRVRQLVPPLFGP-GRPSWSADGKTLAFVAVKPYSARFREGTSQILTVDVV 489 Query: 380 G--------SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TL 430 E + P WSP GR + F D+ ++ + +G Sbjct: 490 TGKQTYHAPGGEHASISTRGDDGPVWSPDGRQVAFVV----DSTLRIMPVAADGTPRGPA 545 Query: 431 INTPAYASD-PQWVG 444 +D P W G Sbjct: 546 RELNGEVADAPSWSG 560 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 21/222 (9%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + +P+ V D+ V +R+ + P +G Sbjct: 55 EGTNLTASAAPDGSVVV-------DLQGVLFRVPAGGGEAERLTSVEDEAAMPDVGPDG- 106 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R D I+ + + +LT F + +S D + I F SDR G ++ Sbjct: 107 RIAYQGYADGRFHIWIAEPDGSEPVQLTRGGFDDREPRWSFDGTTIAFSSDRGGSYDIWT 166 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + + R + D P W P G + + G I + DG+ L+ Sbjct: 167 VDVATGELIRRTDD-PGQEHTPAWHPDGRSLVYVADEG----IAAVAADGTTRTLVPSPG 221 Query: 391 NL---QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + AP+WSP G L + R +D ++GR T Sbjct: 222 DEVALHAPSWSPDGGRLAYVRHEDTRADLV-----VDGRVVT 258 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 17/196 (8%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + L + +G + D ++ V ERLT+ PD Sbjct: 51 VTVTEGTNLTASAAPDGSVVV-----DLQGVLFRVPAGGGEAERLTSVEDEAAMPDVGPD 105 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +I ++ +G+ +++ + +GS+ ++++ +P WS G IAF+ G + Sbjct: 106 G-RIAYQGYADGRFHIWIAEPDGSEPVQLTRGGF-DDREPRWSFDGTTIAFSSDRGGSYD 163 Query: 373 IGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I + + +D + P W P GRSL++ + + ++ +G TL+ Sbjct: 164 IWTVDVATGELIRRTDDPGQEHTPAWHPDGRSLVYVADEG------IAAVAADGTTRTLV 217 Query: 432 NTPAYA---SDPQWVG 444 +P P W Sbjct: 218 PSPGDEVALHAPSWSP 233 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 17/216 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + G LT D+ P P+ ++AY Y D + P + Sbjct: 77 LFRVPAGGGEAERLTSVEDEAAM-PDVGPDG-RIAYQGYADGRFH--IWIAEPDGSEPVQ 132 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + PR+S +G S + + DI++VD+ + R T+ + ++ PD Sbjct: 133 LTRGGFDDREPRWSFDGTTIAFSSDRGGSYDIWTVDVATGELIRRTDDPGQEHTPAWHPD 192 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +V+ +D + + ++G+ + + S E + P WSP G +A+ + + Sbjct: 193 GRSLVYVADEG----IAAVAADGTTRTLVPSPGDEVALHAPSWSPDGGRLAYVRHEDTRA 248 Query: 372 AIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI 405 + V DG R++ E ++ A W R L Sbjct: 249 DLVV---DG---RVVTEGEDVFLFAAEWLDDHRLLY 278 >gi|254458984|ref|ZP_05072407.1| protein TolB [Campylobacterales bacterium GD 1] gi|207084255|gb|EDZ61544.1| protein TolB [Campylobacterales bacterium GD 1] Length = 416 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 73/417 (17%), Positives = 164/417 (39%), Gaps = 27/417 (6%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKD 72 M+I LL + + A ++V + +++ + D K + + D Sbjct: 1 MRILFILLFIF---SLSHANDATIEVIKKVESLPTLAVEDSSVSYDDTFRLKFFKALVAD 57 Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWD 132 L +FN + + + + + +D ++ ++ ++ L ++ +L Sbjct: 58 LNVISLFN-VDRHHRQTHFNDSAVMVDNKD-----MDYVLRYKMFEDDDGALNIDLKLI- 110 Query: 133 VKDRKQIIGKKFFSSPAS-WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 + KK+ S + + ++HTI+ DI + + ++ R + S V K Sbjct: 111 -HKENIALNKKYRISRKNVFMFVSHTIAYDINEFMGAPSVEWMKRRVI--FSRVVAPQKT 167 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + D A + P+++ N Q Y T DE + +D + + K Sbjct: 168 EVVISDYTLAYQHTVVKG--GFNIFPKWANNAQNAFYYTSLDEKKPTLKYVDIKTGK-SK 224 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 I + M++ S NGK+ L+++ D+Y D+ + T++LT I+++A + Sbjct: 225 AIISSDGMMICSDVSRNGKKLLLTMAPKGQPDVYLYDVDTFKTQQLTTYGGIDVNAQFM- 283 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------TK 365 DS IVF S R G ++ + + +++ +++ S G+ I + Sbjct: 284 DSETIVFISGRLGYPNVFSKKIGSNSVEQMVYYGKSNSAC---STHGEYIVYKARESSNA 340 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 FS F + ++ R L + P +S G +++F + + + ++ Sbjct: 341 FSTNTFNLHLISTKTDFIRRLTATGVNEFPRFSIDGDAILFIKNYKAQSSIGIIRLN 397 >gi|300712709|ref|YP_003738522.1| periplasmic component of the Tol biopolymer transport system [Halalkalicoccus jeotgali B3] gi|299126393|gb|ADJ16731.1| periplasmic component of the Tol biopolymer transport system [Halalkalicoccus jeotgali B3] Length = 1046 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 14/211 (6%) Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D R + +A S +G+ ++ D ++ + + E+LT+ Sbjct: 46 DNEDIREGTEVTVTDGTNIALTASPDGESVVM----DLHGLLFRLPREGGEAEQLTDVEL 101 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 Y+PD ++I F+ +G ++ M ++GSD ++I+ D P WSP G IA Sbjct: 102 EPTQPDYAPDGARIAFQGYGDGNFDIWTMAADGSDIQQIT-DGFWDDRKPQWSPDGTQIA 160 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK---- 417 F+ E + I + + + +DS+ PTWSP G + + G+ G Sbjct: 161 FSSDRNENYDIWTVDIETGDLQQWTDDSSENFEPTWSPDGTEIAYVADPTGEYGDGDDSP 220 Query: 418 --LYSIDLNGRNETLINTPAYAS--DPQWVG 444 + +++ +G TL++ + P W Sbjct: 221 ITIEAVNQDGETRTLVSGQMGQTLHSPSWSP 251 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 21/237 (8%) Query: 222 NQQKVAYATYDDEDILRVYLMDT-----RIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + +A D + + + L R +++ + P ++ +G R Sbjct: 60 DGTNIALTASPDGESVVMDLHGLLFRLPREGGEAEQLTDVELEPTQPDYAPDGARIAFQG 119 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D DI+++ + +++T+ + + +SPD +QI F SDR ++ + Sbjct: 120 YGDGNFDIWTMAADGSDIQQITDGFWDDRKPQWSPDGTQIAFSSDRNENYDIWTVDIETG 179 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--------IGVMKKDGSQERLLVE 388 D ++ + D + F+P WSP G IA+ ++ I + +DG L+ Sbjct: 180 DLQQWTDDSSEN-FEPTWSPDGTEIAYVADPTGEYGDGDDSPITIEAVNQDGETRTLVSG 238 Query: 389 --DSNLQAPTWSPSGRSLIFSR-----KKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 L +P+WSP+G L + R + GD + + + I TP + S Sbjct: 239 QMGQTLHSPSWSPNGEDLAYVRINEQENRTGDIDLMVSESPVTDGEDVFIFTPHWLS 295 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 41/262 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PR SP+ + VA+ +D L RI + P+RI + P +S +G+ Sbjct: 351 ILTPRLSPDGEHVAFIALND-------LWLMRIGQPPQRITDDSFYQADPAWSPDGRYVT 403 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 S ++ D+Y DLQ+ +++T ++A++SPD S+I F++ + L Sbjct: 404 YSSDENGTQDLYVHDLQTGENQQVTARDDAVVAATWSPDGSKIAFQNQH--RTTLIAEVE 461 Query: 334 NGSDQKRISQDKEASY-----FDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGS 381 ++ +S +EA P WS G+ +A +F I + + Sbjct: 462 RSENEIELSDGQEAIRPLFLPGRPTWSADGNTVAVAAVKQYSDRFRSGTSQILTVDIETG 521 Query: 382 QER--------LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR------- 426 +E + P WSP GR + F ++ ++ +D G Sbjct: 522 EETFYPPGEEFKSLSTRGNDGPVWSPDGRWMAFVV----ESTLRVMPVDEAGEPTGPATQ 577 Query: 427 -NETLINTPAYASDPQWVGFMD 447 E + P ++ D +W+ +++ Sbjct: 578 ITEEATDAPTWSGDSEWLLYLN 599 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 81/460 (17%), Positives = 153/460 (33%), Gaps = 67/460 (14%) Query: 12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSK 71 + + L + GGF T+ + T +I E V Sbjct: 22 GVLGGVALSGLSAGGFAYTAAGHADNEDIREGTE----VTVTDGTNIALTASPDGESVVM 77 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL +F L + +++T+ + P D+ GA++ G G + Sbjct: 78 DLHGL-LFRLPREGGEAEQLTDVELEPTQPDYAPDGARIAFQG----YGDGNFDI----- 127 Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 + + ++I DD + + ++I F S+ + Sbjct: 128 ----------WTMAADGSDIQQITDGFWDDRKPQWSPDG----TQIAFSSDRNEN----Y 169 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRI 246 + +D + +++ T + FEP +SP+ ++AY Y D D + + Sbjct: 170 DIWTVDIETGDLQQWTDDSSE-NFEPTWSPDGTEIAYVADPTGEYGDGDDSPITIEAVNQ 228 Query: 247 DRAPKRIGNFRSMIL--APRFSSNGKRALISVQKDEAMDIYSVDL--------QSNATER 296 D + + + + +P +S NG+ ++ +DL Sbjct: 229 DGETRTLVSGQMGQTLHSPSWSPNGEDLAYVRINEQENRTGDIDLMVSESPVTDGEDVFI 288 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQL-----YVMQSNGSDQKRISQDKEASY-- 349 T YS D + + D + + + + DQK D + Sbjct: 289 FTPHWLSTDEILYSADGNVRTLDLDSGTSSNVPFSATFDVPALDYDQKSYDFDNTGACEV 348 Query: 350 ---FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLI 405 P SP G+ +AF + + +M+ G + + +DS QA P WSP GR + Sbjct: 349 QGILTPRLSPDGEHVAFIALND----LWLMRI-GQPPQRITDDSFYQADPAWSPDGRYVT 403 Query: 406 FSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +S ++G LY DL G N+ + W Sbjct: 404 YSSDENGTQ--DLYVHDLQTGENQQVTARDDAVVAATWSP 441 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 100/276 (36%), Gaps = 43/276 (15%) Query: 159 SDDIYQSITGEKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 S + ++ G + + + ++ +++DG ++ Q L P Sbjct: 188 SSENFEPTWSPDGTEIAYVADPTGEYGDGDDSPITIEAVNQDGETRTLVSGQMGQTLHSP 247 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRF-SSNGKRALIS 275 +SPN + +AY ++++ D + + + + + I P + S++ L S Sbjct: 248 SWSPNGEDLAYVRINEQENR---TGDIDLMVSESPVTDGEDVFIFTPHWLSTD--EILYS 302 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINI------------------------SASYSP 311 + + ++DL S + + + ++ + SP Sbjct: 303 ADGN----VRTLDLDSGTSSNVPFSATFDVPALDYDQKSYDFDNTGACEVQGILTPRLSP 358 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D + F + L++M+ G +RI+ D DP WSP G + ++ Sbjct: 359 DGEHVAFIA----LNDLWLMRI-GQPPQRITDDSFY-QADPAWSPDGRYVTYSSDENGTQ 412 Query: 372 AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 + V + + + D + A TWSP G + F Sbjct: 413 DLYVHDLQTGENQQVTARDDAVVAATWSPDGSKIAF 448 >gi|88803169|ref|ZP_01118695.1| hypothetical protein PI23P_11292 [Polaribacter irgensii 23-P] gi|88780735|gb|EAR11914.1| hypothetical protein PI23P_11292 [Polaribacter irgensii 23-P] Length = 1135 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 15/200 (7%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R L+ S +GK L S+ D +Y++ + R+T+ L ++ SYSP Sbjct: 54 RFNTNEGTWLSLDMSPDGKTILFSMLGD----LYTIPFKGGKAIRITDGLALDAQPSYSP 109 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D +I F SDR+G + +++M + +++++DK WSP G+ I Sbjct: 110 DGKRIAFTSDRDGNDNVWIMDLASKETRQVTKDKRGLVESVAWSPDGEYIV-AAKGKRNL 168 Query: 372 AIGVMKKD-GSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDG------DTGSKLYSID 422 + + KD GS +L+ E +L+ P +SP + + +S + G ++Y D Sbjct: 169 KLHLYHKDAGSGTQLIKEPKDLKTVEPVFSPDNKYIYYSARTGGWNYNAQLPQYQIYRYD 228 Query: 423 L-NGRNETLINTPAYASDPQ 441 L G++ + + A P Sbjct: 229 LATGKSSKITSRYGSAFTPT 248 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 83/227 (36%), Gaps = 14/227 (6%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + S + + + L + G +T + +P +SP+ +++A+ Sbjct: 59 EGTWLSLDMSPDGKTILFSMLGDLYTIPFKGGKAIRITDGL-ALDAQPSYSPDGKRIAFT 117 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + D + V++MD + + R ++ + +S +G+ + + + + ++ Sbjct: 118 SDRDGN-DNVWIMDLASKETRQVTKDKRGLVESVAWSPDGEYIV-AAKGKRNLKLHLYHK 175 Query: 290 QSNATERLTNTLFI--NISASYSPDSSQIVFESDREGKE--------QLYVMQSNGSDQK 339 + + +L + +SPD+ I + + G Q+Y Sbjct: 176 DAGSGTQLIKEPKDLKTVEPVFSPDNKYIYYSARTGGWNYNAQLPQYQIYRYDLATGKSS 235 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +I+ + S F P S G + + EK + + E L Sbjct: 236 KITS-RYGSAFTPTLSNDGKYMVYGSRYEEKTGLVLRNLISGDENWL 281 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 103/312 (33%), Gaps = 57/312 (18%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI F S+ + + +MD R +T + ++ +SP+ + + + Sbjct: 113 RIAFTSDRDGNDN----VWIMDLASKETRQVTKDKRGLVESVAWSPDGEYI--VAAKGKR 166 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQKDEA--------MDIYS 286 L+++L + I + + + P FS + K S + IY Sbjct: 167 NLKLHLYHKDAGSGTQLIKEPKDLKTVEPVFSPDNKYIYYSARTGGWNYNAQLPQYQIYR 226 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 DL + + ++T+ + + S D +V+ S E K L + D+ ++ + Sbjct: 227 YDLATGKSSKITSRYGSAFTPTLSNDGKYMVYGSRYEEKTGLVLRNLISGDENWLAYPIQ 286 Query: 347 ASYFDPVWS------------------PQGDLIAFTKFSGE-----KFAIGVMKKDG--- 380 + V S G I SG+ F + V G Sbjct: 287 RDDQESVASLGVLPAMTFTLNNKEVLASYGGKIYRIPVSGDAAIEIPFEVDVALAIGPKL 346 Query: 381 -------SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN 432 LL P SP G ++F + +KLY + L NG+ E L Sbjct: 347 EFKYPISDDTELLANQIRNAKP--SPDGTQIVF------NALNKLYVMKLPNGKPERLTK 398 Query: 433 TPAYASDPQWVG 444 + P W Sbjct: 399 MDLIETQPNWSP 410 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 11/162 (6%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + L+S R +S SPD I+F LY + G RI+ D Sbjct: 45 LPLESGRMIRFNTNEGTWLSLDMSPDGKTILFSM----LGDLYTIPFKGGKAIRIT-DGL 99 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSL 404 A P +SP G IAFT + +M + R + +D +++ WSP G + Sbjct: 100 ALDAQPSYSPDGKRIAFTSDRDGNDNVWIMDLASKETRQVTKDKRGLVESVAWSPDGEYI 159 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS--DPQWVG 444 + + K + LY D G LI P +P + Sbjct: 160 V-AAKGKRNLKLHLYHKDA-GSGTQLIKEPKDLKTVEPVFSP 199 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 27/181 (14%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDRE 323 S +G + + + +Y + L + ERLT I ++SP+ +IV+ SD + Sbjct: 369 SPDGTQIVF----NALNKLYVMKLPNGKPERLTKMDLIETQPNWSPNGKEIVYATWSDID 424 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G LY + S G +R++ A Y PVW + + I FTK S + F Sbjct: 425 GG-HLYKVNSKGGKPQRLTTVS-AIYNTPVWDAKTNRIVFTKGSAQSFKNAYTRAAFSGG 482 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + +G + + + + P + S + S K L SI +G +E + Sbjct: 483 EDLAWISSEGGNNTFIAKANGRENPHFVKSDARIYLSNSKG------LSSIRWDGTDEKI 536 Query: 431 I 431 + Sbjct: 537 V 537 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 53/264 (20%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++ + + ++Y+M + P+R+ + P +S NGK + + D Sbjct: 369 SPDGTQIVFNALN-----KLYVMKL-PNGKPERLTKMDLIETQPNWSPNGKEIVYATWSD 422 Query: 280 -EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-------------EGK 325 + +Y V+ + +RLT I + + +++IVF G Sbjct: 423 IDGGHLYKVNSKGGKPQRLTTVSAIYNTPVWDAKTNRIVFTKGSAQSFKNAYTRAAFSGG 482 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 E L + S G + I++ V S + S +I DG+ E++ Sbjct: 483 EDLAWISSEGGNNTFIAKANGRENPHFVKS-DAR--IYLSNSKGLSSIRW---DGTDEKI 536 Query: 386 LVE--------DSNLQAPTWS------P-SGRS----LIFSRKKDGDTG-----SKLYSI 421 +V+ DS+ A ++S P + + +G+ + +Y + Sbjct: 537 VVKITGIVTFGDSHKDALSFSNLEEGTPEDNKKASKPVAVYMAPEGNKAMALIHTDIYVV 596 Query: 422 DLNGRNETLINTPAY---ASDPQW 442 + +T + + + P W Sbjct: 597 TIPTYGQTPTISVSDTQASQFPSW 620 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 56/248 (22%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 D I +P +SPN +++ YAT+ D D +Y ++++ P+R+ ++ P + + Sbjct: 400 DLIETQPNWSPNGKEIVYATWSDIDGGHLYKVNSK-GGKPQRLTTVSAIYNTPVWDAKTN 458 Query: 271 RALIS-------------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 R + + D+ + + + + + S + Sbjct: 459 RIVFTKGSAQSFKNAYTRAAFSGGEDLAWISSEGGNNTFIAKANGRE-NPHFV-KSDARI 516 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWS--------------------- 355 + S+ +G + ++ +I+ S Sbjct: 517 YLSNSKGLSSIRWDGTDEKIVVKITGIVTFGDSHKDALSFSNLEEGTPEDNKKASKPVAV 576 Query: 356 ---PQGD----------LIAFTKFSGEKFAIGVMKKDGSQE---RLLVEDSNLQAPTWSP 399 P+G+ + G+ I V SQ +L + P W+ Sbjct: 577 YMAPEGNKAMALIHTDIYVVTIPTYGQTPTISVSDTQASQFPSWKLTTFGG--EFPAWAA 634 Query: 400 SGRSLIFS 407 +G+ + +S Sbjct: 635 NGKMVYWS 642 >gi|167946736|ref|ZP_02533810.1| TolB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 163 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +++ K DIY D + ++T I+ ++SPD IVF SDR GK Q+Y S Sbjct: 1 MTLSKGGNPDIYVFDFTTRKLRQITRHYAIDTEPAWSPDGRSIVFTSDRGGKPQIYKTPS 60 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 G +R++ + ++P G +A ++ I ++ D ++L S + Sbjct: 61 YGGKAERVTFQNSYNARA-SYAPDGKSLAMVTRENGQYRIATLQLDSGVMQVLSRGSLDE 119 Query: 394 APTWSPSGRSLIFSRKKD 411 +P+++P+G +I++ KK Sbjct: 120 SPSFAPNGSMIIYASKKG 137 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 3/140 (2%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T +Y+ D R ++I ++ P +S +G+ + + + IY Sbjct: 1 MTLSKGGNPDIYVFD-FTTRKLRQITRHYAIDTEPAWSPDGRSIVFTSDRGGKPQIYKTP 59 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ER+T N ASY+PD + + G+ ++ +Q + + +S+ Sbjct: 60 SYGGKAERVTFQNSYNARASYAPDGKSLAMVTRENGQYRIATLQLDSGVMQVLSRGS--L 117 Query: 349 YFDPVWSPQGDLIAFTKFSG 368 P ++P G +I + G Sbjct: 118 DESPSFAPNGSMIIYASKKG 137 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S + V D +R +T I EP +SP+ + + + + D ++Y Sbjct: 4 SKGGNPDIYVFDFTTRKLRQITR-HYAIDTEPAWSPDGRSIVFTS-DRGGKPQIY-KTPS 60 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +R+ S ++ +GK + +++ I ++ L S + L+ ++ Sbjct: 61 YGGKAERVTFQNSYNARASYAPDGKSLAMVTRENGQYRIATLQLDSGVMQVLSRG-SLDE 119 Query: 306 SASYSPDSSQIVFES 320 S S++P+ S I++ S Sbjct: 120 SPSFAPNGSMIIYAS 134 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGS 381 G +YV ++I++ A +P WSP G I FT G K I G Sbjct: 6 GGNPDIYVFDFTTRKLRQITR-HYAIDTEPAWSPDGRSIVFTSDRGGKPQIYKTPSYGGK 64 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 ER+ ++S +++P G+SL +++G ++ ++ L+ +++ + P Sbjct: 65 AERVTFQNSYNARASYAPDGKSLAMVTRENGQ--YRIATLQLDSGVMQVLSRGSLDESPS 122 Query: 442 WVG 444 + Sbjct: 123 FAP 125 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSI 421 T G I V + R + + P WSP GRS++F+ + G ++Y Sbjct: 1 MTLSKGGNPDIYVFDFTTRKLRQITRHYAIDTEPAWSPDGRSIVFTSDRGGK--PQIYKT 58 Query: 422 -DLNGRNETLINTPAYASDPQWVG 444 G+ E + +Y + + Sbjct: 59 PSYGGKAERVTFQNSYNARASYAP 82 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 12/138 (8%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 F + R+I + D + + + I+F S+ K + G Sbjct: 14 FDFTTRKLRQITRHYAIDTEPAWSPDG----RSIVFTSDRGG----KPQIYKTPSYGGKA 65 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 +T ++ ++P+ + +A T ++ + ++D ++ + S+ +P Sbjct: 66 ERVT-FQNSYNARASYAPDGKSLAMVTRENGQYR---IATLQLDSGVMQVLSRGSLDESP 121 Query: 264 RFSSNGKRALISVQKDEA 281 F+ NG + + +K +A Sbjct: 122 SFAPNGSMIIYASKKGQA 139 >gi|222823241|ref|YP_002574814.1| translocation protein TolB precursor [Campylobacter lari RM2100] gi|222538462|gb|ACM63563.1| translocation protein TolB precursor [Campylobacter lari RM2100] Length = 399 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 116/279 (41%), Gaps = 11/279 (3%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + +AH + + + D+ + ++ + G ++ + + D + L Sbjct: 112 EEYPFLAHRSVAQMNKKLGFAPVDWMDHKILIART--QGSKQSDILLADYTLTYQKVLI- 168 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + P+++ +Q Y T +++I +Y + + K I + + M++A S + Sbjct: 169 -SKGLNLFPKWANKEQNAFYFTAYEDEIPTLYKYNMKNKNITKIIAS-KGMMVASDVSDD 226 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 GK+ L+++ + D+Y D+ S ++TN + I+++ ++ +IVF SDR G + Sbjct: 227 GKKILLTMAPKDQPDVYLYDVDSKNLTQITNYMGIDVNGNFVDGDKKIVFVSDRLGYPNI 286 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---SGEKFAIGVMKKDGSQERL 385 ++ + + +++ + + + + ++ F + +M R Sbjct: 287 FMQNLDSNLTEQVVFHGKNNSSVSTY---KHYMVYSSREINQSGVFNLYLMSTQSDYIRQ 343 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 L + P +S G S++F + + + I+ N Sbjct: 344 LTANGKNLFPRFSSDGESVVFIKYLGSQSALGVIRINAN 382 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 79/222 (35%), Gaps = 6/222 (2%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL-ISVQKDEAM 282 K+ A + L D + I + + L P++++ + A + +DE Sbjct: 139 HKILIARTQGSKQSDILLADYTLTYQKVLIS--KGLNLFPKWANKEQNAFYFTAYEDEIP 196 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++++ ++ + + +++ S D +I+ + + +Y+ + + +I+ Sbjct: 197 TLYKYNMKNKNITKIIASKGMMVASDVSDDGKKILLTMAPKDQPDVYLYDVDSKNLTQIT 256 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSG 401 + + + I F I + D + E+++ N + + + Sbjct: 257 -NYMGIDVNGNFVDGDKKIVFVSDRLGYPNIFMQNLDSNLTEQVVFHGKNNSSVS-TYKH 314 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + SR+ + LY + + P++ Sbjct: 315 YMVYSSREINQSGVFNLYLMSTQSDYIRQLTANGKNLFPRFS 356 >gi|269837976|ref|YP_003320204.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787239|gb|ACZ39382.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 663 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 59/281 (20%) Query: 210 RDQILFEPRFSPNQQKVAYAT----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 R + L +P+ +P+ ++VAY + + + R +PR+ Sbjct: 12 RIRYLGDPQIAPDGRRVAYVVTEIDLEGKRYRSAIWVVNADGSGRTRFTAGTHKDTSPRW 71 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----- 320 S +G R +D +Y + ER+T+ +SPD + + F S Sbjct: 72 SPDGSRLAFLSDRDGVTQLYVMPSDGGEPERITDLKHGVADPVWSPDGAWLAFVSKVGPE 131 Query: 321 -----------DR--------------------------EGKEQLYVMQSNGSDQKRISQ 343 DR + + ++++ + G ++I+ Sbjct: 132 GPVQRADETEEDRKRAAQRSDTKVIRSLKYKLDGEGFFDDRRRHIFIVPATGGTPRQIT- 190 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLV-EDSNLQAPT 396 D + P WSP G IAF + I + DG + R + D +P Sbjct: 191 DGDWDDTQPAWSPDGRAIAFVSNRTDDRERNTFSDIWIAPLDGGEPRRITPSDGVYNSPA 250 Query: 397 WSPSGRSLIFSRK-----KDGDTGSKLYSIDLNGRNETLIN 432 +SP G + + T + L+ G + Sbjct: 251 FSPDGDWIAYVGNPIVEPYGPTTLTGLWVAPTTGGEARNLT 291 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 114/337 (33%), Gaps = 79/337 (23%) Query: 176 RILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 R+ +V + + + V++ DG+ R + PR+SP+ ++A+ + D Sbjct: 27 RVAYVVTEIDLEGKRYRSAIWVVNADGSG-RTRFTAGTHKDTSPRWSPDGSRLAFLS-DR 84 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------------- 277 + + ++Y+M + P+RI + + + P +S +G + Sbjct: 85 DGVTQLYVMPSD-GGEPERITDLKHGVADPVWSPDGAWLAFVSKVGPEGPVQRADETEED 143 Query: 278 --------------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 D I+ V ++T+ + + ++SP Sbjct: 144 RKRAAQRSDTKVIRSLKYKLDGEGFFDDRRRHIFIVPATGGTPRQITDGDWDDTQPAWSP 203 Query: 312 DSSQIVFESDREGKEQ------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 D I F S+R + +++ +G + +RI+ + Y P +SP GD IA+ Sbjct: 204 DGRAIAFVSNRTDDRERNTFSDIWIAPLDGGEPRRITP-SDGVYNSPAFSPDGDWIAYVG 262 Query: 366 F-------SGEKFAIGVMKKDGSQERLLVEDSNLQA----------------PTWSPSGR 402 + V G + R L + + P W P G Sbjct: 263 NPIVEPYGPTTLTGLWVAPTTGGEARNLTAALDREVGNTVLSDQHYAVAPQRPLWLPDGS 322 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 L+ G + + L+G ++ ++ Sbjct: 323 GLLTLISDQGTVP--VLRVSLDGETTVVVGGDREVAN 357 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 54/384 (14%), Positives = 118/384 (30%), Gaps = 79/384 (20%) Query: 118 KEGKDRLRVEFRL--WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + D RV + + D++ ++ ++ S R + ++ + S Sbjct: 20 QIAPDGRRVAYVVTEIDLEGKRYRSAIWVVNADGSGRT---RFTAGTHKDTSPRWSPDGS 76 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE- 234 R+ F+S+ L VM DG +T + + +P +SP+ +A+ + Sbjct: 77 RLAFLSDRDG----VTQLYVMPSDGGEPERITDLKHGVA-DPVWSPDGAWLAFVSKVGPE 131 Query: 235 ---------------------------------------DILRVYLMDTRIDRAPKRIGN 255 D R + P++I + Sbjct: 132 GPVQRADETEEDRKRAAQRSDTKVIRSLKYKLDGEGFFDDRRRHIFIVPATGGTPRQITD 191 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLTNTLFINISASY 309 P +S +G+ + + DI+ L R+T + + S ++ Sbjct: 192 GDWDDTQPAWSPDGRAIAFVSNRTDDRERNTFSDIWIAPLDGGEPRRITPSDGVYNSPAF 251 Query: 310 SPDSSQIVFESDR-------EGKEQLYVMQSNGSDQKRISQDKEASYFD----------- 351 SPD I + + L+V + G + + ++ + + Sbjct: 252 SPDGDWIAYVGNPIVEPYGPTTLTGLWVAPTTGGEARNLTAALDREVGNTVLSDQHYAVA 311 Query: 352 ---PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 P+W P G + + + DG ++ D + + + G L F Sbjct: 312 PQRPLWLPDGSGLLTLISDQGTVPVLRVSLDGETTVVVGGDREVANVSVAGDGT-LAFLA 370 Query: 409 KKDGDTGSKLYSIDLNGRNETLIN 432 ++Y +G NE ++ Sbjct: 371 SSP-TRPLEVYVAAADGSNEREVS 393 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 29/228 (12%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + + ++ G R +T D +P +SP+ + +A+ + +D R D I Sbjct: 170 DDRRRHIFIVPATGGTPRQITDG-DWDDTQPAWSPDGRAIAFVSNRTDDRERNTFSDIWI 228 Query: 247 ----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-------IYSVDLQSNATE 295 P+RI + +P FS +G ++ Sbjct: 229 APLDGGEPRRITPSDGVYNSPAFSPDGDWIAYVGNPIVEPYGPTTLTGLWVAPTTGGEAR 288 Query: 296 RLTNTLFINIS---------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 LT L + + PD S ++ +G + + +G Sbjct: 289 NLTAALDREVGNTVLSDQHYAVAPQRPLWLPDGSGLLTLISDQGTVPVLRVSLDGETTVV 348 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + + + G L + V DGS ER + E Sbjct: 349 V--GGDREVANVSVAGDGTLAFLASSPTRPLEVYVAAADGSNEREVSE 394 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 395 PTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 P +P GR + + + S ++ ++ +G T + + P+W Sbjct: 19 PQIAPDGRRVAYVVTEIDLEGKRYRSAIWVVNADGSGRTRFTAGTHKDTSPRWSP 73 >gi|89889850|ref|ZP_01201361.1| putative periplasmic component of the Tol biopolymer transport system [Flavobacteria bacterium BBFL7] gi|89518123|gb|EAS20779.1| putative periplasmic component of the Tol biopolymer transport system [Flavobacteria bacterium BBFL7] Length = 376 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 27/212 (12%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + D +++ D ++ N + P S G + + + + +++Y++D Sbjct: 155 YVWPIYDSYDIFVADLE-GNITAQLTNEKGYDAEPTVSPQGDKIVFTSDRSGDLELYTMD 213 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--------------------EQL 328 + + +++T L + A +SPD SQ++F S R +L Sbjct: 214 IDGSNVKQITYELGYDGGAFFSPDGSQLIFRSSRPKTEEEIKEYKDLLKVGLVQPTEMEL 273 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKDGSQER 384 Y+ ++GSD ++++Q A++ P + P G + F+ G F + ++ DG+ Sbjct: 274 YICNADGSDLRQLTQLGNANW-SPFFLPDGKRVLFSSNFEAERGFPFNLYMINTDGTGLE 332 Query: 385 LLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTG 415 + A P +S +G+ L FS ++ G Sbjct: 333 RITHGETFDAFPVFSNNGKYLAFSSNRNNGGG 364 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 32/170 (18%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKE----QLYVMQSNGS---DQKRISQD 344 +++T N A +S D Q+VF+S+ + Q+++M + S ++ Sbjct: 57 KDIQQVTFG-GDNAEAYWSFDDKQLVFQSNNTAWDVECDQMFLMNNGDSFRESVPKMIST 115 Query: 345 KEASYFDPVWSPQGDLIAFTKFS---------------------GEKFAIGVMKKDGSQE 383 + + P + I + + + I V +G+ Sbjct: 116 GKGRTTCAYFLPDNEHIIYASTHLAMDDCPDTPLKENGKYVWPIYDSYDIFVADLEGNIT 175 Query: 384 RLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 L E PT SP G ++F+ + GD +LY++D++G N I Sbjct: 176 AQLTNEKGYDAEPTVSPQGDKIVFTSDRSGD--LELYTMDIDGSNVKQIT 223 >gi|317009739|gb|ADU80319.1| translocation protein TolB [Helicobacter pylori India7] Length = 417 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 58/369 (15%), Positives = 137/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + ++ V E ++ Sbjct: 48 KLHEVLANDLRTSQHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + + AH ++ + + + R++ S+ Sbjct: 100 IS-RLKLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ + D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPNGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D I Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSI 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSTDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|196229417|ref|ZP_03128282.1| peptidase M28 [Chthoniobacter flavus Ellin428] gi|196226649|gb|EDY21154.1| peptidase M28 [Chthoniobacter flavus Ellin428] Length = 988 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 124/313 (39%), Gaps = 61/313 (19%) Query: 192 SLCVMDRDGAN-IRYLTPSRDQILFEPR-----FSPNQQKVAYATYDDED--ILRVYLMD 243 ++ D AN R++T SR I R F P+ + + + +E ++YL+D Sbjct: 13 TVAAFADDAANEARFITNSRQLIFEGKRSGEGYFHPDGNLMIFQSEREEGNPFYQMYLLD 72 Query: 244 TRIDRAPKRIGN-----------------FRSMILAP----------RFSSNGKRALISV 276 + F S P F ++GK+ S Sbjct: 73 LLSGETARVSTGVGKTTCGFFQPGTNRVLFASTHADPEALAKQKAELDFRASGKQRRYSW 132 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE---------- 326 D+ MDIYS + LTN+ + S+SPD QIVF S R Sbjct: 133 DYDQTMDIYSCNQDGTQMVNLTNSPGYDAEGSFSPDGKQIVFCSLRAAFPLEKLTPEQRA 192 Query: 327 ----------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AIG 374 +Y+M ++GS+ +R++ D P +SP G I + F + Sbjct: 193 RYEKDPAYFGDIYLMNADGSNVRRLT-DAPGYDGGPFFSPDGARIIWRHFDESGMFADVW 251 Query: 375 VMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--TLI 431 MK DGS + + + ++ AP + PSG+ +IF+ K G T +LY +D+NG +E + Sbjct: 252 TMKLDGSDKHRVTDFKSMSWAPFYHPSGKYIIFTSNKLGFTNFELYIVDVNGDHEPVRVT 311 Query: 432 NTPAYASDPQWVG 444 T + P + Sbjct: 312 YTDGFDGLPVFSP 324 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 31/233 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV- 276 R S Q++ ++D + + +Y + + + N FS +GK+ + Sbjct: 122 RASGKQRR---YSWDYDQTMDIYSCNQDGTQMVN-LTNSPGYDAEGSFSPDGKQIVFCSL 177 Query: 277 -----------------QKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 +KD A DIY ++ + RLT+ + +SPD ++I+ Sbjct: 178 RAAFPLEKLTPEQRARYEKDPAYFGDIYLMNADGSNVRRLTDAPGYDGGPFFSPDGARII 237 Query: 318 FES-DREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAI 373 + D G ++ M+ +GSD+ R++ K S+ P + P G I FT F + Sbjct: 238 WRHFDESGMFADVWTMKLDGSDKHRVTDFKSMSW-APFYHPSGKYIIFTSNKLGFTNFEL 296 Query: 374 GVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 ++ +G E R+ D P +SP+G+ + ++ + D S+++ D N Sbjct: 297 YIVDVNGDHEPVRVTYTDGFDGLPVFSPNGKKISWTSGRTSDGKSQIFLADWN 349 Score = 40.0 bits (92), Expect = 0.90, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 3/103 (2%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H ++D ++S++ S + S G L ++D +G + D Sbjct: 261 HRVTD--FKSMSWAPFYHPSGKYIIFTSNKLGFTNFELYIVDVNGDHEPVRVTYTDGFDG 318 Query: 216 EPRFSPNQQKVAYATYDDEDI-LRVYLMDTRIDRAPKRIGNFR 257 P FSPN +K+++ + D +++L D + A K I Sbjct: 319 LPVFSPNGKKISWTSGRTSDGKSQIFLADWNHEAALKAIEESP 361 >gi|297380305|gb|ADI35192.1| Tol-Pal system beta propeller repeat protein TolB [Helicobacter pylori v225d] Length = 417 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 65/416 (15%), Positives = 148/416 (35%), Gaps = 27/416 (6%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRS 76 L L L+ G F T + V + + K+ EV++ DL+ S Sbjct: 4 LWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSI---DNDANYALKLHEVLANDLKTS 60 Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F++ + + ++ V E +++ +L+DV Sbjct: 61 QHFDV--------SQNKDQGAINYAELKDKKVHLVALVSVAVENGNKIS-RLKLYDVDTE 111 Query: 137 KQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + + AH ++ + + + R++ S+ + GI +L Sbjct: 112 TLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALAD 171 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +++ P+++ +Q Y T E + + + + I + Sbjct: 172 YTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKYNIQKATH-ENIAS 227 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + M + SS+G + L+S+ D D+Y D ++T I++S + D Sbjct: 228 SQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKS 287 Query: 316 IVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------ 368 + F SDR G +Y+ + +++ + ++ + D + + Sbjct: 288 MAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSVVYVSRENLNEFGK 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + ++ + R L + + Q P +S GR++++ +K + L +D N Sbjct: 345 TVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN 400 >gi|226228060|ref|YP_002762166.1| hypothetical protein GAU_2654 [Gemmatimonas aurantiaca T-27] gi|226091251|dbj|BAH39696.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 338 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 103/273 (37%), Gaps = 12/273 (4%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + + G+ L V D + L RD P S + Q+V Y + + + Sbjct: 66 TPATGGGVPSLRLMVYHTDSGTVAPLF-GRDIAGGSPSVSADGQRVVYVGESNSTVDYDF 124 Query: 241 --LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERL 297 L AP+R+ AP S NG + IY D++ A L Sbjct: 125 QDLWVVMRGAAPRRLALSDGSEHAPSMSPNGALIAYARPNAMMLSHIYVADIEGRAESPL 184 Query: 298 TNTLFIN-----ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + + + ++SPD ++++F G LY M+ +G+ ++I+ S FD Sbjct: 185 SLAMAPGLQYTFATPAWSPDGTRLLFAGGAPGMLHLYTMRVDGTQVQQITNAT-YSDFDG 243 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 WSP G IAF ++ I + ER + + P WSP G + F Sbjct: 244 TWSPDGQTIAFVRYISPNHQILMTRNLVTGAERTFEYANRSRHPAWSPDGTRIAFVSNMS 303 Query: 412 GDTGSKLYSIDLNGRN-ETLINTPAYASDPQWV 443 + +LY++ +G L N P W+ Sbjct: 304 DNADLELYTVKPDGSALTRLTNDNLTQQHPSWI 336 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 175 SRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 R+++V ES + L V+ R GA R L S D P SPN +AYA + Sbjct: 108 QRVVYVGESNSTVDYDFQDLWVVMR-GAAPRRLALS-DGSEHAPSMSPNGALIAYARPNA 165 Query: 234 EDILRVYLMDTRID-RAPKRIGNFRSMILA---PRFSSNGKRALISVQKDEAMDIYSVDL 289 + +Y+ D +P + + P +S +G R L + + +Y++ + Sbjct: 166 MMLSHIYVADIEGRAESPLSLAMAPGLQYTFATPAWSPDGTRLLFAGGAPGMLHLYTMRV 225 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 +++TN + + ++SPD I F Q+ + ++ + +R + + Sbjct: 226 DGTQVQQITNATYSDFDGTWSPDGQTIAFVRYISPNHQILMTRNLVTGAER-TFEYANRS 284 Query: 350 FDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNL-QAPTW 397 P WSP G IAF + +K DGS L D+ Q P+W Sbjct: 285 RHPAWSPDGTRIAFVSNMSDNADLELYTVKPDGSALTRLTNDNLTQQHPSW 335 >gi|241204940|ref|YP_002976036.1| WD40 domain protein beta Propeller [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858830|gb|ACS56497.1| WD40 domain protein beta Propeller [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SPN ++ + + +Y++ Sbjct: 45 LYRLPLDGGEVVKVDTGFAVNCNNDHGISPNGSEIVISDKTEFGKSAIYILPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G++ +D+ DIY++ + A RLT+ N YS Sbjct: 105 ITENLPSYWHG--WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +G+ ++++ D ++F SP D++ + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRVHPDGTGLQQVTSDDYGNWFA-HPSPNNDMVLLLSYDPSVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 15/205 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + + R RA + + ++ AP FS +G L+ + +Y + L ++ Sbjct: 4 SVEIYNVRTGRA-REVWQTDKLVEAPNFSPDGSYLLL----NGDGLLYRLPLDGGEVVKV 58 Query: 298 TNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +N + SP+ S+IV SD+ GK +Y++ G + I+++ + + Sbjct: 59 DTGFAVNCNNDHGISPNGSEIV-ISDKTEFGKSAIYILPIEGGTPRLITENLPSYWHG-- 115 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ + F I + DG E L P +S G+ + F+ + G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 413 DTGSKLYSIDLNGRNETLINTPAYA 437 +++ + +G + + Y Sbjct: 176 LM--QIWRVHPDGTGLQQVTSDDYG 198 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + ++SPD S ++ G LY + +G + ++ Sbjct: 7 IYNVRTGRAREVWQTDKLVEAPNFSPDGSYLLLN----GDGLLYRLPLDGGEVVKVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + K K AI ++ +G RL+ E+ WSP GR Sbjct: 63 AVNCNNDHGISPNGSEIVISDKTEFGKSAIYILPIEGGTPRLITENLPSYWHGWSPDGRQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + +D +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRDD--LFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYF 169 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 192 SLCVMDRDGANIRYLTP--SRDQILFEPRFSPNQQKVAYATY 231 L +MD DG N++ L + P +SP+ ++ AY Y Sbjct: 230 RLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 >gi|116252434|ref|YP_768272.1| TolB-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257082|emb|CAK08176.1| putative TolB-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 275 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SP+ K+ + + +Y + Sbjct: 45 LYRLPLDGGEVVKVDTGFAVNCNNDHGISPDGTKIVISDKTEFGKSAIYTLPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G++ +D+ DIY++ + A RLT+ N YS Sbjct: 105 ITENLPSYWHG--WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +G+ ++++ D + ++F SP D++ + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFA-HPSPNNDMVLLLSYDPSVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 15/201 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + + R RA + + ++ AP FS +G L+ + +Y + L ++ Sbjct: 4 SVEIYNVRTGRA-REVWQTDRLVEAPNFSPDGSYLLL----NGDGLLYRLPLDGGEVVKV 58 Query: 298 TNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +N + SPD ++IV SD+ GK +Y + G + I+++ + + Sbjct: 59 DTGFAVNCNNDHGISPDGTKIV-ISDKTEFGKSAIYTLPIEGGTPRLITENLPSYWHG-- 115 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ + F I + DG E L P +S G+ + F+ + G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 413 DTGSKLYSIDLNGRNETLINT 433 +++ I +G + + Sbjct: 176 LM--QIWRIHPDGTGLEQVTS 194 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + ++SPD S ++ G LY + +G + ++ Sbjct: 7 IYNVRTGRAREVWQTDRLVEAPNFSPDGSYLLLN----GDGLLYRLPLDGGEVVKVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + K K AI + +G RL+ E+ WSP GR Sbjct: 63 AVNCNNDHGISPDGTKIVISDKTEFGKSAIYTLPIEGGTPRLITENLPSYWHGWSPDGRQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + +D +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRDD--LFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYF 169 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 192 SLCVMDRDGANIRYLTP--SRDQILFEPRFSPNQQKVAYATY 231 L +MD DG N++ L + P +SP+ ++ AY Y Sbjct: 230 RLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 >gi|294495630|ref|YP_003542123.1| Periplasmic component of the Tol biopolymer transport system [Methanohalophilus mahii DSM 5219] gi|292666629|gb|ADE36478.1| Periplasmic component of the Tol biopolymer transport system [Methanohalophilus mahii DSM 5219] Length = 360 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 105/253 (41%), Gaps = 9/253 (3%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 IY D++ + ++ + ++ +MD DG+N + + +P FS Sbjct: 31 IYPLTDDFSSDYHYPAWSPDGTQITYMNDKAIWIMDADGSNPHVIYDG-MKWDGDPCFSA 89 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQKD 279 + + + +A+ + YL +++ I +P S +G Sbjct: 90 DGKDIYFASESRKPYSSTYLNLFKMNVDGSNITQLTDGADRRSPSISPDGSMLAYLSNIA 149 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DI+ +D+ + + +LT T S+SPD ++++ K+ L++ + Sbjct: 150 GNYDIWVMDITNKSHRQLTFTSEDEGKPSWSPDGDEVIY----SFKDNLWLTDVEFDKSR 205 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 +++ + DP + P G+ I F G + + ++ + + +LL +D ++ +P Sbjct: 206 QLTHGTS-NDVDPFFLPSGEKIVFISDRGGETNLWLIDTEDDERQLLTDDRKVEYSPAAG 264 Query: 399 PSGRSLIFSRKKD 411 P G+ ++F + + Sbjct: 265 PDGKKIVFGARAN 277 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 27/258 (10%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 ANI LT P +SP+ ++ Y +++MD P I + Sbjct: 29 ANIYPLTDDFSSDYHYPAWSPDGTQITYMNDKA-----IWIMDAD-GSNPHVIYDGMKWD 82 Query: 261 LAPRFSSNGKRALISVQK-----DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P FS++GK + + ++++ +++ + +LT+ S S SPD S Sbjct: 83 GDPCFSADGKDIYFASESRKPYSSTYLNLFKMNVDGSNITQLTDG-ADRRSPSISPDGSM 141 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + S+ G ++VM ++++ E P WSP GD + ++ + + Sbjct: 142 LAYLSNIAGNYDIWVMDITNKSHRQLTFTSE-DEGKPSWSPDGDEVIYSFKD----NLWL 196 Query: 376 MKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-- 432 + + R L SN P + PSG ++F + G+T L+ ID L+ Sbjct: 197 TDVEFDKSRQLTHGTSNDVDPFFLPSGEKIVFISDRGGET--NLWLIDTEDDERQLLTDD 254 Query: 433 -----TPAYASDPQWVGF 445 +PA D + + F Sbjct: 255 RKVEYSPAAGPDGKKIVF 272 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 177 ILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I F SES +L M+ DG+NI LT D+ P SP+ +AY + + Sbjct: 94 IYFASESRKPYSSTYLNLFKMNVDGSNITQLTDGADR--RSPSISPDGSMLAYLSNIAGN 151 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +++MD +++ +++ P +S +G + S + + ++ D++ + + Sbjct: 152 -YDIWVMDI-TNKSHRQLTFTSEDEGKPSWSPDGDEVIYSFKDN----LWLTDVEFDKSR 205 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +LT+ ++ + P +IVF SDR G+ L+++ + +++ ++ D++ Y P Sbjct: 206 QLTHGTSNDVDPFFLPSGEKIVFISDRGGETNLWLIDTEDDERQLLTDDRKVEY-SPAAG 264 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKD 379 P G I F + E F + +++ + Sbjct: 265 PDGKKIVFGARANETFDLWMLEME 288 >gi|153005706|ref|YP_001380031.1| WD40 domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029279|gb|ABS27047.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. Fw109-5] Length = 357 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 51/290 (17%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 F+ R L V ++ G + L VM DG+ +R ++ + ++ F P +++ Y++ Sbjct: 64 FDGREL-VFQATPEGAGCDQLYVMGADGSGLRRVSRGKGRVTCG-YFFPGGERIVYSSTH 121 Query: 233 --------DEDILRVYLMDTRIDRAPKRIGNFRSMILAP------------RFSSNGKRA 272 D + Y+ + LAP S +G Sbjct: 122 ASAAECPPKPDHSKGYVWALYDYQLYT--ARPDGSDLAPLAPAPGKYNAEATVSKDG-WI 178 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + + +D +++Y + L + RLT+T + A +S D +IVF + Sbjct: 179 VFTSTRDGDLELYKMRLDGSGLVRLTHTPGYDGGAFFSADGRRIVFRASRPTTEAELADY 238 Query: 322 ---------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SG 368 R GK +L+ M ++GSD +++++ AS F P + P G I F G Sbjct: 239 RALLGEGLVRPGKLELFTMNADGSDVRQVTRLGAAS-FAPFFHPDGRRIVFASNVGDPRG 297 Query: 369 EKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 F + V+ DG+ ER+ ++ P +SP G+ L+F+ ++ + Sbjct: 298 RNFDLYVVNDDGTGLERITTNETFDGFPMFSPDGKRLVFASNRNASRPGE 347 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 90/288 (31%), Gaps = 48/288 (16%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N+R LT + FS + +++ + + + +R+ + + Sbjct: 46 GNVRQLTFGGENAEAY--FSFDGRELVFQATPEGAGCDQLYVMGADGSGLRRVSRGKGRV 103 Query: 261 LAPRFSSNGKRALISVQKDEA-------------------MDIYSVDLQSNATERLTNTL 301 F G+R + S A +Y+ + L Sbjct: 104 TCGYFFPGGERIVYSSTHASAAECPPKPDHSKGYVWALYDYQLYTARPDGSDLAPLAPAP 163 Query: 302 F-INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 N A+ S D IVF S R+G +LY M+ +GS R++ +S G Sbjct: 164 GKYNAEATVSKDG-WIVFTSTRDGDLELYKMRLDGSGLVRLTH-TPGYDGGAFFSADGRR 221 Query: 361 IAFTK--------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSP 399 I F K + M DGS R + AP + P Sbjct: 222 IVFRASRPTTEAELADYRALLGEGLVRPGKLELFTMNADGSDVRQVTRLGAASFAPFFHP 281 Query: 400 SGRSLIFSRKKDGDTGSK--LYSIDLNGRN-ETLINTPAYASDPQWVG 444 GR ++F+ G LY ++ +G E + + P + Sbjct: 282 DGRRIVFASNVGDPRGRNFDLYVVNDDGTGLERITTNETFDGFPMFSP 329 >gi|87311184|ref|ZP_01093307.1| Periplasmic component of the Tol biopolymer transport system [Blastopirellula marina DSM 3645] gi|87286092|gb|EAQ78003.1| Periplasmic component of the Tol biopolymer transport system [Blastopirellula marina DSM 3645] Length = 343 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 98/272 (36%), Gaps = 47/272 (17%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ + + Y + P I R FS + K+ + + Sbjct: 42 FSPDGKTIVYQAVPPQYPFYQIYTQPLSGGEPTLISTGRGRTTCAYFSPDAKQIMFASSH 101 Query: 279 --------------------------------DEAMDIYSVDLQSNATERLTNTLFINIS 306 D DI++ DL+S LT + Sbjct: 102 LDPMLTETEQAEIAQQEADRKSGTRRRYSWDFDPYTDIFAKDLKSGELTPLTTEKGYDAE 161 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +Y+ D ++I F SDR+G +Y+M ++G++QK+++ D + P SP G I F Sbjct: 162 GAYNKDGTKIAFCSDRDGDPDIYIMDADGTNQKQLT-DAKGYDGGPFISPNGKWIVFRSD 220 Query: 367 SGEK--FAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFS---RKKDGDTGSKLYS 420 E+ I V+ DG E L ++ AP W P+ +I++ + G L+ Sbjct: 221 RKEEGFLQIYVIGVDGQHETALTDNVGVNWAPYWHPTEPYIIWAGADHSQPGRPNYDLWL 280 Query: 421 IDLN--------GRNETLINTPAYASDPQWVG 444 + G+ + ++ A P + Sbjct: 281 MKYEETVDAIKPGKVWRITDSAAADVLPVFSP 312 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 107/300 (35%), Gaps = 50/300 (16%) Query: 170 KGDFN-SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 +G F+ V ++V + G ++ R + FSP+ +++ + Sbjct: 39 EGYFSPDGKTIVYQAVPPQYPFYQIYTQPLSGGEPTLISTGRGRTTCA-YFSPDAKQIMF 97 Query: 229 -------------------------------ATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 ++D + ++ D + + + Sbjct: 98 ASSHLDPMLTETEQAEIAQQEADRKSGTRRRYSWDFDPYTDIFAKDLKSGELT-PLTTEK 156 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 ++ +G + +D DIY +D ++LT+ + SP+ IV Sbjct: 157 GYDAEGAYNKDGTKIAFCSDRDGDPDIYIMDADGTNQKQLTDAKGYDGGPFISPNGKWIV 216 Query: 318 FESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----TKFSGE-K 370 F SDR EG Q+YV+ +G + ++ + ++ P W P I + G Sbjct: 217 FRSDRKEEGFLQIYVIGVDGQHETALTDNVGVNW-APYWHPTEPYIIWAGADHSQPGRPN 275 Query: 371 FAIGVMKKD--------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + +MK + G R+ + P +SP G+ L+++ + D S+L+ D Sbjct: 276 YDLWLMKYEETVDAIKPGKVWRITDSAAADVLPVFSPDGKQLMWTSTRTDDHSSQLFIAD 335 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 45/196 (22%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASY 349 + ++T+ + +SPD IV+++ Q+Y +G + IS Sbjct: 25 SNVRQVTSGMVKAGEGYFSPDGKTIVYQAVPPQYPFYQIYTQPLSGGEPTLIST-GRGRT 83 Query: 350 FDPVWSPQGDLIAFTK-------FSGEKFAIGVMKKD---GSQER--------------- 384 +SP I F E+ I + D G++ R Sbjct: 84 TCAYFSPDAKQIMFASSHLDPMLTETEQAEIAQQEADRKSGTRRRYSWDFDPYTDIFAKD 143 Query: 385 --------LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN---- 432 L E ++ G + F +DGD +Y +D +G N+ + Sbjct: 144 LKSGELTPLTTEKGYDAEGAYNKDGTKIAFCSDRDGD--PDIYIMDADGTNQKQLTDAKG 201 Query: 433 ---TPAYASDPQWVGF 445 P + + +W+ F Sbjct: 202 YDGGPFISPNGKWIVF 217 >gi|256823743|ref|YP_003147706.1| WD40 domain-containing protein beta Propeller [Kangiella koreensis DSM 16069] gi|256797282|gb|ACV27938.1| WD40 domain protein beta Propeller [Kangiella koreensis DSM 16069] Length = 1068 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 31/209 (14%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +GK D DIY++ + +TN++ ++ +SP+ Q+ F +D+ G Sbjct: 58 VSPDGKTIAF----DMLGDIYTMPMSGGKATNITNSMAWDMQPRFSPNGQQLAFTTDQGG 113 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKF----AIGVMKKD 379 + ++VM S+GSDQ +++++ +PVWSP G+ IA F+G + I + K Sbjct: 114 GDNIWVMDSDGSDQYQVTKESFRLLNNPVWSPDGNYIAARKHFTGTRSLGAGEIWLYHKS 173 Query: 380 GSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSIDL---- 423 G L + N Q P ++P G+ ++FSR D+ ++Y + Sbjct: 174 GGSGVQLNKRPNEQKDLGEPAFTPDGKYVLFSRDSTPGSYFEYSKDSNEQIYEVFAINRE 233 Query: 424 NGRNETLINTPAYA------SDPQWVGFM 446 G ET I+ P A D +++ F+ Sbjct: 234 TGDIETWIDGPGGAVRPTPSPDGKFIAFV 262 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 87/221 (39%), Gaps = 28/221 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + +A+ D +Y M I N + + PRFS NG++ + + Sbjct: 59 SPDGKTIAFDMLGD-----IYTMPM-SGGKATNITNSMAWDMQPRFSPNGQQLAFTTDQG 112 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ +D + ++T F + + +SPD + I F R G ++++ Sbjct: 113 GGDNIWVMDSDGSDQYQVTKESFRLLNNPVWSPDGNYIAARKHFTGTRSLGAGEIWLYHK 172 Query: 334 NGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEK-------------FAIGVMKK 378 +G ++ +++ +P ++P G + F++ S + + + + Sbjct: 173 SGGSGVQLNKRPNEQKDLGEPAFTPDGKYVLFSRDSTPGSYFEYSKDSNEQIYEVFAINR 232 Query: 379 DGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + ++ PT SP G+ + F R+ + L Sbjct: 233 ETGDIETWIDGPGGAVRPTPSPDGKFIAFVRRIRAQSALFL 273 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 106/303 (34%), Gaps = 40/303 (13%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 I+ I +G + + + ++ + + M G +T S +PRFSP Sbjct: 42 IFADIQVNEGTWMNLDVSPDGKTIAFDMLGDIYTMPMSGGKATNITNS-MAWDMQPRFSP 100 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQ 277 N Q++A+ T D +++MD+ + ++ P +S +G + Sbjct: 101 NGQQLAFTT-DQGGGDNIWVMDSDGSDQYQVTKESFRLLNNPVWSPDGNYIAARKHFTGT 159 Query: 278 KD-EAMDIYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDR----------E 323 + A +I+ + +L +++PD ++F D + Sbjct: 160 RSLGAGEIWLYHKSGGSGVQLNKRPNEQKDLGEPAFTPDGKYVLFSRDSTPGSYFEYSKD 219 Query: 324 GKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 EQ+Y + + + I D P SP G IAF + + A+ + ++ Sbjct: 220 SNEQIYEVFAINRETGDIETWIDGPGGAVRPTPSPDGKFIAFVRRIRAQSALFLKDRETG 279 Query: 382 QERLLVED------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 E + E W+P ++F + KL+ ID+ + T Sbjct: 280 AEFPIYEGLERDMQETWAIHGVYPNFAWTPDSDEIVFWAQ------GKLHKIDVASKEVT 333 Query: 430 LIN 432 I Sbjct: 334 NIP 336 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 61/329 (18%), Positives = 110/329 (33%), Gaps = 69/329 (20%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YAT 230 ++ F ++ + VMD DG++ +T ++L P +SP+ +A + Sbjct: 103 QQLAFTTDQGGGDN----IWVMDSDGSDQYQVTKESFRLLNNPVWSPDGNYIAARKHFTG 158 Query: 231 YDDEDILRVYLMDTRIDRAPK--RIGNFRSMILAPRFSSNGKRALIS----------VQK 278 ++L + + N + + P F+ +GK L S K Sbjct: 159 TRSLGAGEIWLYHKSGGSGVQLNKRPNEQKDLGEPAFTPDGKYVLFSRDSTPGSYFEYSK 218 Query: 279 DEAMDIY---SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D IY +++ ++ E + + + SPD I F + L++ Sbjct: 219 DSNEQIYEVFAINRETGDIETWIDGPGGAVRPTPSPDGKFIAFVRRIRAQSALFLKDRET 278 Query: 336 SDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-------- 377 + I + Y + W+P D I F G+ I V Sbjct: 279 GAEFPIYEGLERDMQETWAIHGVYPNFAWTPDSDEIVFWAQ-GKLHKIDVASKEVTNIPF 337 Query: 378 --KDGSQERLLVED--------SNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSIDL- 423 KD + R V N + W SP G IF K+YS+ L Sbjct: 338 EVKDRREMRQAVTQKNAAYEAKFNAKMLRWLQVSPDGDQAIF------QALGKIYSMSLP 391 Query: 424 NGRNETLINT-------PAYASDPQWVGF 445 NG+ + L P +++D + + Sbjct: 392 NGKPKRLTRQDEHFEFYPRFSADGSKIVY 420 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 43/264 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-------------- 263 ++P+ ++ + + + ++ + + P + + R M A Sbjct: 306 AWTPDSDEIVF--WAQGKLHKIDVASKEVTNIPFEVKDRREMRQAVTQKNAAYEAKFNAK 363 Query: 264 --RF---SSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIV 317 R+ S +G +A+ IYS+ L + +RLT +S D S+IV Sbjct: 364 MLRWLQVSPDGDQAIFQA----LGKIYSMSLPNGKPKRLTRQDEHFEFYPRFSADGSKIV 419 Query: 318 FES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + + D + + ++ S G K +S ++ Y +P SP G+ + SG + Sbjct: 420 YTTWDDKTLGTIRIVSSRGGSGKVVS-EQPGHYTNPSLSPDGETVVAQAISGGYLTSPLY 478 Query: 377 KKDGS-------QERLLVEDSNLQAPTWSPSGRSLIFSRK--KDGDTGSKLYSIDLNGRN 427 +D ++ V P ++ S + FS+ SKL S DL+G Sbjct: 479 SQDTGIIAINLDDDKQYVLSKRGSNPFFAGSSSRVFFSQTTPSGETYSSKLVSTDLSGNE 538 Query: 428 ETLINTPAYASD----P--QWVGF 445 + SD P QW+ F Sbjct: 539 MQEHYEGNWISDFTVSPDQQWLAF 562 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 9/105 (8%) Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSG 401 Q E ++ + SP G IAF I M G + + + P +SP+G Sbjct: 47 QVNEGTWMNLDVSPDGKTIAFDMLGD----IYTMPMSGGKATNITNSMAWDMQPRFSPNG 102 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + L F+ + G G ++ +D +G ++ + ++ ++P W Sbjct: 103 QQLAFTTDQGG--GDNIWVMDSDGSDQYQVTKESFRLLNNPVWSP 145 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 90/254 (35%), Gaps = 43/254 (16%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + LT + F PRFS + K+ Y T+DD+ + + ++ +R + K + Sbjct: 395 PKRLTRQDEHFEFYPRFSADGSKIVYTTWDDKTLGTIRIVSSR-GGSGKVVSEQPGHYTN 453 Query: 263 PRFSSNGKRALISVQKDEAMD---------IYSVDLQSNATERLTNTLFINISASYSPDS 313 P S +G+ + + I +++L + L+ ++ S Sbjct: 454 PSLSPDGETVVAQAISGGYLTSPLYSQDTGIIAINLDDDKQYVLSKRGSN---PFFAGSS 510 Query: 314 SQIVFE----SDREGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSG 368 S++ F S +L +G++ + + E ++ D SP +AFT+ Sbjct: 511 SRVFFSQTTPSGETYSSKLVSTDLSGNEMQ---EHYEGNWISDFTVSPDQQWLAFTQR-- 565 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP------------TWSPSGRSLIFSRKKDGDTGS 416 + + V S + + P WS +SL +S G Sbjct: 566 --YQVYVTPFVQSGKAINTGPGANNLPVRKFSKFAGSNLAWSEDSKSLAWS------LGP 617 Query: 417 KLYSIDLNGRNETL 430 LY L R E L Sbjct: 618 DLYQQALTDRFEFL 631 Score = 36.9 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 15/132 (11%) Query: 160 DDIYQSITGEKG-----DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 DD Q + ++G +S +F S++ SG S ++ D + + Sbjct: 490 DDDKQYVLSKRGSNPFFAGSSSRVFFSQTTPSGET-YSSKLVSTDLSGNEMQEHYEGNWI 548 Query: 215 FEPRFSPNQQKVAYATYDD-------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + SP+QQ +A+ + + + ++ F LA +S Sbjct: 549 SDFTVSPDQQWLAFTQRYQVYVTPFVQSGKAINTGPGANNLPVRKFSKFAGSNLA--WSE 606 Query: 268 NGKRALISVQKD 279 + K S+ D Sbjct: 607 DSKSLAWSLGPD 618 >gi|114331371|ref|YP_747593.1| WD40 domain-containing protein [Nitrosomonas eutropha C91] gi|114308385|gb|ABI59628.1| WD40 domain protein beta Propeller [Nitrosomonas eutropha C91] Length = 369 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 133/341 (39%), Gaps = 70/341 (20%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + D KQ+ G++ S +R + L V Sbjct: 38 ITDAKQVSGQEVRSGEGYYRA--------------------DGNWLVYQAEVAGENPFYQ 77 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + + + N++ ++P + P+Q+KV +++ D+ + ++ R Sbjct: 78 IYLKNLANENVQQISPGIGKTTCS-WVHPSQEKVLFSSTHDDPEAKAKMVAEIEQRKS-- 134 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 G+R + DE DIY D + + LTNT + AS+SPD Sbjct: 135 ----------------GQRRAYAWDYDEFYDIYEADFEGKNIKNLTNTKGYDAEASWSPD 178 Query: 313 SSQIVFESDREGKEQ-------------------LYVMQSNGSDQKRISQDKEASYFDPV 353 I F S+R + +Y+M ++GS+ KR++ P Sbjct: 179 GKLIAFASNRRAYSEPLTEEETALFNNNPSSLIDIYIMDADGSNVKRLTH-TNRYDGGPF 237 Query: 354 WSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKK 410 +SP G I + +FS G++ I M DGS ++ L + + AP + PS + +IF+ Sbjct: 238 FSPDGKRIVWRRFSENGQEAEIFTMNIDGSDQKQLTRLNKMSWAPFYHPSNQYIIFAANV 297 Query: 411 DGDTGSKLYSIDLNGRNETLINT--------PAYASDPQWV 443 +G +LY +D++ + E + T P + D Q++ Sbjct: 298 EGHRNFELYVVDVDSKKEPVRVTEEEGFDGLPVFTPDGQYI 338 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 28/223 (12%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--- 278 + Q+ AYA +D ++ +Y D + K + N + +S +GK + + Sbjct: 134 SGQRRAYA-WDYDEFYDIYEADFE-GKNIKNLTNTKGYDAEASWSPDGKLIAFASNRRAY 191 Query: 279 ----------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--S 320 +DIY +D + +RLT+T + +SPD +IV+ S Sbjct: 192 SEPLTEEETALFNNNPSSLIDIYIMDADGSNVKRLTHTNRYDGGPFFSPDGKRIVWRRFS 251 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKK 378 + + +++ M +GSDQK++++ + S+ P + P I F F + V+ Sbjct: 252 ENGQEAEIFTMNIDGSDQKQLTRLNKMSW-APFYHPSNQYIIFAANVEGHRNFELYVVDV 310 Query: 379 DGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 D +E R+ E+ P ++P G+ + ++ + D L+ Sbjct: 311 DSKKEPVRVTEEEGFDGLPVFTPDGQYITWTSDRTPDKKGHLF 353 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 78/191 (40%), Gaps = 10/191 (5%) Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 K + K + + ASW I+ + E LF + + +M Sbjct: 161 KNLTNTKGYDAEASWSPDGKLIAFASNRRAYSEPLTEEETALF----NNNPSSLIDIYIM 216 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGN 255 D DG+N++ LT + ++ P FSP+ +++ + + ++ ++ M+ K++ Sbjct: 217 DADGSNVKRLTHT-NRYDGGPFFSPDGKRIVWRRFSENGQEAEIFTMNID-GSDQKQLTR 274 Query: 256 FRSMILAPRFSSNGKRALISVQKDE--AMDIYSVDLQSNA-TERLTNTLFINISASYSPD 312 M AP + + + + + + ++Y VD+ S R+T + ++PD Sbjct: 275 LNKMSWAPFYHPSNQYIIFAANVEGHRNFELYVVDVDSKKEPVRVTEEEGFDGLPVFTPD 334 Query: 313 SSQIVFESDRE 323 I + SDR Sbjct: 335 GQYITWTSDRT 345 >gi|125588578|gb|EAZ29242.1| hypothetical protein OsJ_13305 [Oryza sativa Japonica Group] Length = 688 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 140/392 (35%), Gaps = 65/392 (16%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P F S GA LV + G D +E + DV + +F Sbjct: 281 TPPGFHAFTPAASPGAPGLVAVATRRAGSDYRHIE--VIDVSSDGK---NAYFEVTRPVA 335 Query: 153 KIAHTISDDIYQ-----SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 H + I +G N + E++ S ++ + DG+ Sbjct: 336 PRVHHFNPFISPDGARVGYHRCRGRGNGDSPLLLENIKSPGSPDTFSLFRIDGS------ 389 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P FS + +K+A+ + +Y++++ ++I F + + Sbjct: 390 --------FPSFSHDGKKIAFV-----GLPGMYVVNSDGSGGRRKI--FSGNAFSTSWDW 434 Query: 268 NGKRALISVQK-DEAMDIYSVDL-----------QSNATERLTNTLFINISASYSPDSSQ 315 K + + D A + VD+ + + ++LT N S SPD Sbjct: 435 KRKGVVYTSIGPDFASETTEVDVVAISLGDDDDESTISMKKLTVGGENNAFPSPSPDGKW 494 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS----GE 369 +VF S R G + LY++ + + I + E + D WSP G+ IAF Sbjct: 495 VVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWIAFASDRHAPGSG 554 Query: 370 KFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIFSRKKDG------------DT 414 FAI ++ +G+ R +V P +SP +SL+F+ Sbjct: 555 SFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFTSDYAAVSAEPVSNPHHYQP 614 Query: 415 GSKLYSIDLNGRNETLINTPAY-ASDPQWVGF 445 +++++D++G N + ++ P W + Sbjct: 615 YGEIFTVDIDGSNIRRLTHNSFEDGTPSWTPY 646 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 48/228 (21%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL------------TN 299 R+ + S+ F+ L +++ ++++Y + S+ E L T Sbjct: 63 RLTDGVSVNYNGNFAPASDSILFVSERNGSLNLYLSPVPSSRREALESASSSSSSAAATI 122 Query: 300 TLFINIS-------ASYSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDK 345 + + S +PD S++V+ S R +Y + + +R++ Sbjct: 123 SPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLG 182 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKF---------AIGVMK-KDGSQERLLVEDSNLQAP 395 A F P SP G+ A + I V + DGS+ L + D P Sbjct: 183 VA-DFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGW--P 239 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLY----SIDLNG---RNETLINTPAY 436 +W+ ++ F R +D D +Y S+ +G + I P + Sbjct: 240 SWA-DETTVFFHR-RDSDGWYGVYRAEISVTGDGVEAASVERITPPGF 285 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 84/267 (31%), Gaps = 51/267 (19%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---- 262 + + F+P + + + + L +YL R S A Sbjct: 64 LTDGVSVNYNGNFAPASDSILFVSERNGS-LNLYLSPVPSSRREALESASSSSSSAAATI 122 Query: 263 --------------PRFSSNGKRALISVQ-------KDEAMDIYSVDLQSNATERLTNTL 301 P + +G R + + +YS +L + T RLT Sbjct: 123 SPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLG 182 Query: 302 FINISASYSPDSSQIVFES----DREG-----KEQLYVMQSNGSDQKRISQDKEASYFDP 352 + S + SP S G + +YV ++ ++ ++ P Sbjct: 183 VADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGG---WP 239 Query: 353 VWSPQGDLIAFTKFSGEKFAIGV----MKKDG----SQERLLVEDSNLQAPTWSPSG--R 402 W+ + + + S + + + DG S ER+ + P SP G Sbjct: 240 SWADETTVFFHRRDSDGWYGVYRAEISVTGDGVEAASVERITPPGFHAFTPAASP-GAPG 298 Query: 403 SLIFSRKKDGDTGSKLYSIDL--NGRN 427 + + ++ G + ID+ +G+N Sbjct: 299 LVAVATRRAGSDYRHIEVIDVSSDGKN 325 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 36/181 (19%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD---- 351 RLT+ + +N + +++P S I+F S+R G LY+ S ++ + +S Sbjct: 63 RLTDGVSVNYNGNFAPASDSILFVSERNGSLNLYLSPVPSSRREALESASSSSSSAAATI 122 Query: 352 --------------PVWSPQGDLIAFTKF-------SGEKFAIGVMKKDGSQERLLVEDS 390 P +P G + + A+ + + R L Sbjct: 123 SPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLG 182 Query: 391 -NLQAPTWSPSGRSLIFSRKKDGDTGSK-------LYSI-DLNGRNETLINTPAYASDPQ 441 +P SPSG + + +Y +G +L P Sbjct: 183 VADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDG--GWPS 240 Query: 442 W 442 W Sbjct: 241 W 241 >gi|115456491|ref|NP_001051846.1| Os03g0840200 [Oryza sativa Japonica Group] gi|50428662|gb|AAT77013.1| putative F8K7.10 protein [Oryza sativa Japonica Group] gi|108712007|gb|ABF99802.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza sativa Japonica Group] gi|113550317|dbj|BAF13760.1| Os03g0840200 [Oryza sativa Japonica Group] gi|215695413|dbj|BAG90604.1| unnamed protein product [Oryza sativa Japonica Group] gi|215713452|dbj|BAG94589.1| unnamed protein product [Oryza sativa Japonica Group] Length = 688 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 140/392 (35%), Gaps = 65/392 (16%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P F S GA LV + G D +E + DV + +F Sbjct: 281 TPPGFHAFTPAASPGAPGLVAVATRRAGSDYRHIE--VIDVSSDGK---NAYFEVTRPVA 335 Query: 153 KIAHTISDDIYQ-----SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 H + I +G N + E++ S ++ + DG+ Sbjct: 336 PRVHHFNPFISPDGARVGYHRCRGRGNGDSPLLLENIKSPGSPDTFSLFRIDGS------ 389 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P FS + +K+A+ + +Y++++ ++I F + + Sbjct: 390 --------FPSFSHDGKKIAFV-----GLPGMYVVNSDGSGGRRKI--FSGNAFSTSWDW 434 Query: 268 NGKRALISVQK-DEAMDIYSVDL-----------QSNATERLTNTLFINISASYSPDSSQ 315 K + + D A + VD+ + + ++LT N S SPD Sbjct: 435 KRKGVVYTSIGPDFASETTEVDVVAISLGDDDDESTISMKKLTVGGENNAFPSPSPDGKW 494 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS----GE 369 +VF S R G + LY++ + + I + E + D WSP G+ IAF Sbjct: 495 VVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWIAFASDRHAPGSG 554 Query: 370 KFAIGVMKKDGSQERLLVE---DSNLQAPTWSPSGRSLIFSRKKDG------------DT 414 FAI ++ +G+ R +V P +SP +SL+F+ Sbjct: 555 SFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFTSDYAAVSAEPVSNPHHYQP 614 Query: 415 GSKLYSIDLNGRNETLINTPAY-ASDPQWVGF 445 +++++D++G N + ++ P W + Sbjct: 615 YGEIFTVDIDGSNIRRLTHNSFEDGTPSWTPY 646 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 48/228 (21%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL------------TN 299 R+ + S+ F+ L +++ ++++Y + S+ E L T Sbjct: 63 RLTDGVSVNYNGNFAPASDSILFVSERNGSLNLYLSPVPSSRREALESASSSSSSAAATI 122 Query: 300 TLFINIS-------ASYSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDK 345 + + S +PD S++V+ S R +Y + + +R++ Sbjct: 123 SPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLG 182 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKF---------AIGVMK-KDGSQERLLVEDSNLQAP 395 A F P SP G+ A + I V + DGS+ L + D P Sbjct: 183 VA-DFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGW--P 239 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLY----SIDLNG---RNETLINTPAY 436 +W+ ++ F R +D D +Y S+ +G + I P + Sbjct: 240 SWA-DETTVFFHR-RDSDGWYGVYRAEISVTGDGVEAASVERITPPGF 285 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 84/267 (31%), Gaps = 51/267 (19%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---- 262 + + F+P + + + + L +YL R S A Sbjct: 64 LTDGVSVNYNGNFAPASDSILFVSERNGS-LNLYLSPVPSSRREALESASSSSSSAAATI 122 Query: 263 --------------PRFSSNGKRALISVQ-------KDEAMDIYSVDLQSNATERLTNTL 301 P + +G R + + +YS +L + T RLT Sbjct: 123 SPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLG 182 Query: 302 FINISASYSPDSSQIVFES----DREG-----KEQLYVMQSNGSDQKRISQDKEASYFDP 352 + S + SP S G + +YV ++ ++ ++ P Sbjct: 183 VADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGG---WP 239 Query: 353 VWSPQGDLIAFTKFSGEKFAIGV----MKKDG----SQERLLVEDSNLQAPTWSPSG--R 402 W+ + + + S + + + DG S ER+ + P SP G Sbjct: 240 SWADETTVFFHRRDSDGWYGVYRAEISVTGDGVEAASVERITPPGFHAFTPAASP-GAPG 298 Query: 403 SLIFSRKKDGDTGSKLYSIDL--NGRN 427 + + ++ G + ID+ +G+N Sbjct: 299 LVAVATRRAGSDYRHIEVIDVSSDGKN 325 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 36/181 (19%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD---- 351 RLT+ + +N + +++P S I+F S+R G LY+ S ++ + +S Sbjct: 63 RLTDGVSVNYNGNFAPASDSILFVSERNGSLNLYLSPVPSSRREALESASSSSSSAAATI 122 Query: 352 --------------PVWSPQGDLIAFTKF-------SGEKFAIGVMKKDGSQERLLVEDS 390 P +P G + + A+ + + R L Sbjct: 123 SPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLG 182 Query: 391 -NLQAPTWSPSGRSLIFSRKKDGDTGSK-------LYSI-DLNGRNETLINTPAYASDPQ 441 +P SPSG + + +Y +G +L P Sbjct: 183 VADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDG--GWPS 240 Query: 442 W 442 W Sbjct: 241 W 241 >gi|108763117|ref|YP_628358.1| WD-40-like repeat-containing amidohydrolase [Myxococcus xanthus DK 1622] gi|108466997|gb|ABF92182.1| WD40-like repeat/amidohydrolase domain protein [Myxococcus xanthus DK 1622] Length = 1057 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + S G + + D IY + + + LT+ + ++ +SPD +I Sbjct: 17 EGTWMNVDVSPRGDEIVFDLLGD----IYVLPMGGGEAKALTSGVAWDMQPRFSPDGKRI 72 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKF 371 VF SDR G + ++V+ +GS+ + ++++K P WSP G I + S Sbjct: 73 VFTSDRGGGDNIWVVDRDGSNARAVTEEKFRLLNSPAWSPDGQFIVARKHFTARRSLGAG 132 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + + G + L E +N Q P +SP GR + FS+ + D ++Y Sbjct: 133 EVWMYHRAGGEGVQLTERTNDQKDLGEPAFSPDGRHVYFSQDVSPGKSFEYNKDPNGQIY 192 Query: 420 SI---DLNGRN-ETLINTPAYASDPQ 441 +I DL + E I P A P Sbjct: 193 AIQRLDLETKEIEPFITGPGGAIRPT 218 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 30/234 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP ++ + D+L + K + + + + PRFS +GKR + + + Sbjct: 26 SPRGDEIVF------DLLGDIYVLPMGGGEAKALTSGVAWDMQPRFSPDGKRIVFTSDRG 79 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ VD + +T F + S ++SPD IV F + R G ++++ Sbjct: 80 GGDNIWVVDRDGSNARAVTEEKFRLLNSPAWSPDGQFIVARKHFTARRSLGAGEVWMYHR 139 Query: 334 NGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVMKK 378 G + ++++ +P +SP G + F++ +G+ +AI + Sbjct: 140 AGGEGVQLTERTNDQKDLGEPAFSPDGRHVYFSQDVSPGKSFEYNKDPNGQIYAIQRLDL 199 Query: 379 DGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + E + PT S G+ L F R+ S LY D+ E + Sbjct: 200 ETKEIEPFITGPGGAIRPTPSRDGKQLAFVRRV--RAKSVLYVTDVASGAERPL 251 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 104/295 (35%), Gaps = 40/295 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + V+ G + LT S +PRFSP+ +++ + Sbjct: 17 EGTWMNVDVSPRGDEIVFDLLGDIYVLPMGGGEAKALT-SGVAWDMQPRFSPDGKRIVFT 75 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D ++++D A ++ +P +S +G+ + + ++ A ++ Sbjct: 76 S-DRGGGDNIWVVDRDGSNARAVTEEKFRLLNSPAWSPDGQFIVARKHFTARRSLGAGEV 134 Query: 285 YSVDLQSNATERL---TNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQSNG--SDQ 338 + +L TN ++SPD + F D GK Y NG Sbjct: 135 WMYHRAGGEGVQLTERTNDQKDLGEPAFSPDGRHVYFSQDVSPGKSFEYNKDPNGQIYAI 194 Query: 339 KRISQD---------KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +R+ + P S G +AF + K + V ER L + Sbjct: 195 QRLDLETKEIEPFITGPGGAIRPTPSRDGKQLAFVRRVRAKSVLYVTDVASGAERPLYDG 254 Query: 390 ------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 W+P ++++F G KL+ ID+ + T I Sbjct: 255 LDRDMQETWAIHGVYPGMAWTPDNKAIVFWA------GGKLHRIDVATKKVTPIA 303 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 10/118 (8%) Query: 331 MQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 M + G ++++ D E ++ + SP+GD I F I V+ G + + L Sbjct: 1 MDAPGFPARQVNIDVTEGTWMNVDVSPRGDEIVFDLLGD----IYVLPMGGGEAKALTSG 56 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + P +SP G+ ++F+ + G G ++ +D +G N + + + P W Sbjct: 57 VAWDMQPRFSPDGKRIVFTSDRGG--GDNIWVVDRDGSNARAVTEEKFRLLNSPAWSP 112 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 111/336 (33%), Gaps = 60/336 (17%) Query: 161 DIYQSITGEKGDFN---SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL--- 214 +I ITG G SR V K+ L V D R L D+ + Sbjct: 203 EIEPFITGPGGAIRPTPSRDGKQLAFVRRVRAKSVLYVTDVASGAERPLYDGLDRDMQET 262 Query: 215 -----FEP--RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR--- 264 P ++P+ + + + + + R+ + ++ R+ R++ A R Sbjct: 263 WAIHGVYPGMAWTPDNKAIVF--WAGGKLHRIDVATKKVTPIAFRVRGTRTIFEAVRSPQ 320 Query: 265 ----------------FSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISA 307 S G R + +Y L + RLT + Sbjct: 321 AVAPERFSTKMLRWVQVSPKGDRVVYQA----LGKLYVKQLPAGTPRRLTKQDDHLEFYP 376 Query: 308 SYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+S D IV+ + D E + V+ + G + K ++Q + Y +P SP G + + Sbjct: 377 SFSRDGRSIVYTTWDDEKLGTIRVVPTTGGEGKVLTQ-QPGYYVEPALSPDGKTLVYRAS 435 Query: 367 SGE---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF--SRKKDGDTG 415 + M G + L D + P + + F K+ + Sbjct: 436 GDGYLMPGLWSRNTGLFAMPAGGGAPKRLARDG--EQPHFGARSDRVYFLHVEHKEKEDV 493 Query: 416 SKLYSIDLNGRNETLINTPAYA------SDPQWVGF 445 L SI L+G E T A A D +WV F Sbjct: 494 RSLKSIGLSGSEERTHLTSAEATELRVSPDERWVAF 529 >gi|325982655|ref|YP_004295057.1| WD40-like beta Propeller containing protein [Nitrosomonas sp. AL212] gi|325532174|gb|ADZ26895.1| WD40-like beta Propeller containing protein [Nitrosomonas sp. AL212] Length = 368 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 25/200 (12%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-- 326 G++ S DE DIY D LTNTL + AS+SPD I F S+R Sbjct: 134 GEQRSYSWDYDEFYDIYETDFSGKNIRNLTNTLGYDAEASWSPDGKLIAFASNRRAYSDE 193 Query: 327 -----------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--S 367 +Y+M ++GS+ KR++ + P +SP G I + +F S Sbjct: 194 LSAEEAALFKVNPASMIDIYIMNADGSNVKRLTHTQSY-DGGPFFSPDGKRIVWRRFSES 252 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 G + I M DG+ ++ + + + AP + PSG+ +IF+ G +LY +D++G+ Sbjct: 253 GREAEIFTMNIDGTDQKQITRLNVMSWAPFYHPSGKYIIFATNLHGHRNFELYIVDVDGQ 312 Query: 427 NE--TLINTPAYASDPQWVG 444 E + + + P + Sbjct: 313 KEPVRVTDMEGFDGLPVFTP 332 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 27/216 (12%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA------- 281 ++D ++ +Y D + + + N +S +GK + + Sbjct: 139 YSWDYDEFYDIYETD-FSGKNIRNLTNTLGYDAEASWSPDGKLIAFASNRRAYSDELSAE 197 Query: 282 ------------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREGKEQ 327 +DIY ++ + +RLT+T + +SPD +IV+ S+ + + Sbjct: 198 EAALFKVNPASMIDIYIMNADGSNVKRLTHTQSYDGGPFFSPDGKRIVWRRFSESGREAE 257 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIGVMKKDGSQE-- 383 ++ M +G+DQK+I++ S+ P + P G I F F + ++ DG +E Sbjct: 258 IFTMNIDGTDQKQITRLNVMSW-APFYHPSGKYIIFATNLHGHRNFELYIVDVDGQKEPV 316 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 R+ + P ++P G + ++ + + L+ Sbjct: 317 RVTDMEGFDGLPVFTPDGNHITWTSDRTPEKKGLLF 352 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 33/237 (13%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIK---------NSLCVMDRDGANIRYLTPSRDQ 212 + S T E + ++++ E SG + + D G NIR LT + Sbjct: 109 VLFSSTHEDAEAKAKMVAEIERRKSGEQRSYSWDYDEFYDIYETDFSGKNIRNLTNTL-G 167 Query: 213 ILFEPRFSPNQQKVAYATYD------------------DEDILRVYLMDTRIDRAPKRIG 254 E +SP+ + +A+A+ ++ +Y+M+ KR+ Sbjct: 168 YDAEASWSPDGKLIAFASNRRAYSDELSAEEAALFKVNPASMIDIYIMNAD-GSNVKRLT 226 Query: 255 NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + +S P FS +GKR + + +I+++++ +++T ++ + Y P Sbjct: 227 HTQSYDGGPFFSPDGKRIVWRRFSESGREAEIFTMNIDGTDQKQITRLNVMSWAPFYHPS 286 Query: 313 SSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 I+F ++ G +LY++ +G + D E PV++P G+ I +T Sbjct: 287 GKYIIFATNLHGHRNFELYIVDVDGQKEPVRVTDMEGFDGLPVFTPDGNHITWTSDR 343 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 20/60 (33%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S + + + G L ++D DG + P F+P+ + + + Sbjct: 286 SGKYIIFATNLHGHRNFELYIVDVDGQKEPVRVTDMEGFDGLPVFTPDGNHITWTSDRTP 345 >gi|77360114|ref|YP_339689.1| hypothetical protein PSHAa1171 [Pseudoalteromonas haloplanktis TAC125] gi|76875025|emb|CAI86246.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 1060 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 25/210 (11%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + + S +GK + + D IY++ + +LT+ + + +SP+ Sbjct: 44 ISVDQGTWMNLDISPDGKTLVFDLLGD----IYTMPISGGNATQLTSDIAWQMQPRFSPN 99 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFS 367 I F SD+ G + +++M NG +Q ++ + P WSP GD + S Sbjct: 100 GKHIAFTSDQGGGDNIWIMDLNGENQSAVTDETFRLLNSPAWSPDGDYLVARKHFTASRS 159 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTG 415 + + K G + L + ++ Q P +SP GR + FS D+ Sbjct: 160 LGAGEVWLYHKAGGKGVQLTKRADDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSV 219 Query: 416 SKLYSIDL----NGRNETLINTPAYASDPQ 441 + +Y I G ET+I+ A P Sbjct: 220 AGIYKIKRYDRETGEIETVISGMGGAIRPT 249 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 30/235 (12%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + + D +Y M ++ + + + PRFS NGK + + Sbjct: 56 ISPDGKTLVFDLLGD-----IYTMPI-SGGNATQLTSDIAWQMQPRFSPNGKHIAFTSDQ 109 Query: 279 DEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQ 332 +I+ +DL +T+ F + S ++SPD +V F + R G ++++ Sbjct: 110 GGGDNIWIMDLNGENQSAVTDETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYH 169 Query: 333 SNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMK 377 G ++++ D + +P++SP G + F+ + + I Sbjct: 170 KAGGKGVQLTKRADDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYD 229 Query: 378 KDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 ++ + E ++ PT SP G+ L + ++ D T LY DL T + Sbjct: 230 RETGEIETVISGMGGAIRPTPSPDGKKLAYIKRDDFQT--SLYLYDLTSGEHTKL 282 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 118/333 (35%), Gaps = 50/333 (15%) Query: 158 ISDDIYQSITGE--KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ--I 213 ++D+ ++ + D + + + + + + + G LT D Sbjct: 128 VTDETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTKRADDQKD 187 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILA 262 L EP FSP+ + V ++ Y D+ R + + + + Sbjct: 188 LGEPMFSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYDRETGEIETVISGMGGAIR 247 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---------AS--YSP 311 P S +GK+ + D +Y DL S +L + L ++ + ++P Sbjct: 248 PTPSPDGKKLAYIKRDDFQTSLYLYDLTSGEHTKLYDKLERDMQETWAIHGVYPTIAWTP 307 Query: 312 DSSQIVF----------ESDREGKEQLYVMQSNGSDQK--RISQDKEASYF------DPV 353 D+ Q+VF SD+ + + +Q+ QK R +Q+ + F + Sbjct: 308 DNQQLVFWAGGTIHKLDVSDKSVETIAFKVQTTKKIQKAVRFTQNLDTDEFDVKMLRNVQ 367 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKD 411 SP G+ F I + + + L + ++ +S G+ ++++ D Sbjct: 368 ISPDGETAIFEALG----HIYKRDLESGKIKRLTKQTDHYELFAQYSRDGKKIVYTTWDD 423 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + G +GR +T+ P +P + Sbjct: 424 NEQGQVRVVSASSGRGDTITEQPGKYVEPTFSP 456 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 20/201 (9%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + +Y D + + L ++S +GK+ + + Sbjct: 368 ISPDGETAIFEALGH-----IYKRDLESGKIKRLTKQTDHYELFAQYSRDGKKIVYTTWD 422 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQL 328 D E + V S + +T + ++SPD +V+ G + Sbjct: 423 DNEQGQVRVVSASSGRGDTITEQPGKYVEPTFSPDGKTVVYRKATGGSILNPKWSLNPGV 482 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + + G + IS++ F D + + + V++ D + R L E Sbjct: 483 YSVSTKGGKSELISKNGYQPQFGAA----NDRVYIMSPWPKP-TLSVVELDTKKVRKLYE 537 Query: 389 DSNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 538 SEHATEFRVSPDGQYLAFAER 558 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 + ++ + SP G + F I M G L D Q P +SP+G+ + Sbjct: 48 QGTWMNLDISPDGKTLVFDLLGD----IYTMPISGGNATQLTSDIAWQMQPRFSPNGKHI 103 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 F+ + G G ++ +DLNG N++ + + + P W Sbjct: 104 AFTSDQGG--GDNIWIMDLNGENQSAVTDETFRLLNSPAWSP 143 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 48/294 (16%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR- 238 + + + + V+ +T + + EP FSP+ + V Y IL Sbjct: 416 IVYTTWDDNEQGQVRVVSASSGRGDTITEQPGKYV-EPTFSPDGKTVVYRKATGGSILNP 474 Query: 239 -------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 VY + T+ ++ N + + + V+L + Sbjct: 475 KWSLNPGVYSVSTKGGKSELISKNGYQPQFGAA-----NDRVYIMSPWPKPTLSVVELDT 529 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDR---------EGKEQLYVMQSNGSDQKRIS 342 +L + SPD + F +R E + L + ++ +Q I Sbjct: 530 KKVRKLYESEHA-TEFRVSPDGQYLAFA-ERFKVFVTPFVENGKTLNISPTD--NQFPIE 585 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVEDSNLQAPT 396 Q + + WS + + +T E + + K D ++ D+ + Sbjct: 586 QLSVRAGENISWSANSNKLYWT-LGPELYHASLEGMFAINKADDKDFKVKSGDNI----S 640 Query: 397 WS-----PSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +S P G + + K DG+ + I +G++ I T A S P+ Sbjct: 641 FSKKMAEPKG-MIALTGAKIITMDGEKVIENGVIITDGKHIKAIGTAAEVSIPK 693 Score = 37.3 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 7/64 (10%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDP 440 + V+ SP G++L+F D +Y++ ++G N T + + A+ P Sbjct: 41 DATISVDQGTWMNLDISPDGKTLVF------DLLGDIYTMPISGGNATQLTSDIAWQMQP 94 Query: 441 QWVG 444 ++ Sbjct: 95 RFSP 98 >gi|91773135|ref|YP_565827.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM 6242] gi|91712150|gb|ABE52077.1| TolB-like beta propeller protein [Methanococcoides burtonii DSM 6242] Length = 416 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 117/304 (38%), Gaps = 50/304 (16%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQKVAYATYDDEDILRV 239 E++ SG +MD DG+N L + + SP+ K+ + + + + Sbjct: 54 ENITSGDWVVDFWMMDADGSNKIQLASGDSMLGLGYNSPLSPDGTKLLFVSNATGN-HEL 112 Query: 240 YLMDTRIDRAPKRIGNFRSMI--------LAPRFSSNGKRALISVQKDEA---------- 281 ++MD + +S + + E Sbjct: 113 WIMDIDGSDKRQLTYGAHLENNLLGLAGRWGISWSPGSSQIVYVSASSENRNVWETVEIN 172 Query: 282 ---------------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 DI+ VD + +LT + NI A++ D +I F S+ G Sbjct: 173 GKKEQMFNISKVSKDYDIWIVDHDGSNNLKLTTSRKDNIGATWRSDGEKIAFVSNESGNG 232 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AIGVMKKDGSQER 384 +++M +GSD+ ++ + S ++ WSP G I + K E + +I VM DGS ++ Sbjct: 233 GIWIMNKDGSDKIQLV---DGSAYNIDWSPDGTKIVYVKGDHENYTSSIWVMDTDGSNKK 289 Query: 385 LLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 L +S P WSP G ++F+ G+ +++ ++ +G ++ I+ P Sbjct: 290 PLTNNSKYFVSQSYPDWSPDGSKIVFNSGNIGE--YEIWIMNSDGTDQIRID---EGLMP 344 Query: 441 QWVG 444 QW Sbjct: 345 QWSP 348 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 15/204 (7%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ + ++D DG+N LT SR + + + +K+A+ + + + ++ Sbjct: 178 MFNISKVSKDYDIWIVDHDGSNNLKLTTSRKDNIGA-TWRSDGEKIAFVSNESGNG-GIW 235 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--DIYSVDLQSNATERLT 298 +M+ + + +S +G + + E I+ +D + + LT Sbjct: 236 IMNKDGSDKIQLV---DGSAYNIDWSPDGTKIVYVKGDHENYTSSIWVMDTDGSNKKPLT 292 Query: 299 NTLFINIS---ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 N +S +SPD S+IVF S G+ ++++M S+G+DQ RI + P WS Sbjct: 293 NNSKYFVSQSYPDWSPDGSKIVFNSGNIGEYEIWIMNSDGTDQIRIDEG-----LMPQWS 347 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKD 379 P+GD I +G+K AI V+ D Sbjct: 348 PKGDKIVTMAINGDKMAISVINLD 371 >gi|297156269|gb|ADI05981.1| amidohydrolase [Streptomyces bingchenggensis BCW-1] Length = 1088 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 11/203 (5%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D A +RI ++ + S +G+ ++ D +++V RLT Sbjct: 61 DGATRRITVTQATNASAALSPDGRTVVL----DLLNLLWTVPAAGGEATRLTGIDQEATE 116 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD +V++S +G L++ +++G+ +R++ A + +P +SP G IA+ Sbjct: 117 PDFSPDGRHLVYQSYTDGNFHLWLARADGTGARRLTSGG-ADHREPRFSPDGKRIAYAGE 175 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + ++AI V+ D ++ ++ P W P G+++ F+ K GD + +D Sbjct: 176 ADGRYAIHVLDLDSGATKVWAPSTDATVQQAQPFWRPDGKAIAFTSGK-GDAPQSVVQVD 234 Query: 423 LNGRNETL-INTPAYASDPQWVG 444 +G+ TL T + P + Sbjct: 235 ADGKRTTLATVTEGRVAGPSFSP 257 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 12/217 (5%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 DGA R SP+ + V D+L + R+ Sbjct: 56 ATQTADGATRRITVTQATNASA--ALSPDGRTVVL------DLLNLLWTVPAAGGEATRL 107 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 P FS +G+ + D ++ RLT+ + +SPD Sbjct: 108 TGIDQEATEPDFSPDGRHLVYQSYTDGNFHLWLARADGTGARRLTSGGADHREPRFSPDG 167 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY--FDPVWSPQGDLIAFTKFSGEKF 371 +I + + +G+ ++V+ + K + +A+ P W P G IAFT G+ Sbjct: 168 KRIAYAGEADGRYAIHVLDLDSGATKVWAPSTDATVQQAQPFWRPDGKAIAFTSGKGDAP 227 Query: 372 AIGVM-KKDGSQERLLV-EDSNLQAPTWSPSGRSLIF 406 V DG + L + + P++SP G + Sbjct: 228 QSVVQVDADGKRTTLATVTEGRVAGPSFSPDGARFAY 264 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 6/210 (2%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 +D + IT + S L V + N L + G LT DQ EP Sbjct: 60 ADGATRRITVTQATNASAALSPDGRTVVLDLLNLLWTVPAAGGEATRLT-GIDQEATEPD 118 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ + + Y +Y D + + +R+ + + PRFS +GKR + + Sbjct: 119 FSPDGRHLVYQSYTDGNFH--LWLARADGTGARRLTSGGADHREPRFSPDGKRIAYAGEA 176 Query: 279 DEAMDIYSVDLQSNATERL---TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D I+ +DL S AT+ T+ + PD I F S + Q V Sbjct: 177 DGRYAIHVLDLDSGATKVWAPSTDATVQQAQPFWRPDGKAIAFTSGKGDAPQSVVQVDAD 236 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + ++ E P +SP G A+ Sbjct: 237 GKRTTLATVTEGRVAGPSFSPDGARFAYVH 266 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 87/247 (35%), Gaps = 25/247 (10%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P SP+ +++A+A D + V + APK + + + P +S +G + Sbjct: 363 IVSPSLSPDGERIAFAALGDIWLAPVNPPRGK-GSAPKAVVSDGHLNTDPAWSPDGSALV 421 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + A D+++ D+ T RLT+ ++SPD + + F G L+ + Sbjct: 422 YVSDRGGAADLWTYDIADGTTRRLTDLQDAASGPAFSPDGASVAFG---LGAGTLHTVDV 478 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLI-------AFTKFSGEKFAIGVMKKDGSQER-- 384 ++++ A P +S G + ++ + ++ + Sbjct: 479 ATGAVRKVAGPLNAP-GRPTFSADGRKLSLAALAPVTARYREGFNRVLTVELATGEAHYD 537 Query: 385 -----LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYAS 438 + + P SP G+ + L ++D GR T + Sbjct: 538 DPVPGKSLANRIDAGPVHSPDGKHTAYIV----GGTLHLSALDTAGRPTGTARELNGETA 593 Query: 439 D-PQWVG 444 D P W Sbjct: 594 DAPSWSA 600 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 23/216 (10%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 S + +P +SP+ + Y + D ++ D D +R+ + + P FS + Sbjct: 403 SDGHLNTDPAWSPDGSALVYVS-DRGGAADLWTYDI-ADGTTRRLTDLQDAASGPAFSPD 460 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ-------IVFESD 321 G + A +++VD+ + A ++ L ++S D + V Sbjct: 461 GASVAFGL---GAGTLHTVDVATGAVRKVAGPLNAPGRPTFSADGRKLSLAALAPVTARY 517 Query: 322 REGKEQLYVMQSNGSDQK---RISQDKEAS--YFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 REG ++ ++ + + A+ PV SP G A+ G + + Sbjct: 518 REGFNRVLTVELATGEAHYDDPVPGKSLANRIDAGPVHSPDGKHTAYI--VGGTLHLSAL 575 Query: 377 KKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 G R L AP+WS RSL++ Sbjct: 576 DTAGRPTGTAREL-NGETADAPSWSADSRSLLYLSN 610 >gi|325293040|ref|YP_004278904.1| tolB protein [Agrobacterium sp. H13-3] gi|325060893|gb|ADY64584.1| tolB protein [Agrobacterium sp. H13-3] Length = 276 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 15/203 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ A + + +YL+ + N S +S +GK + Sbjct: 73 ISPDGSLYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--WSPDGKGFAYCGIR 130 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D+ DIYS+D+ S RLT+ N YSPD I F S R G+ Q++ ++ +GS Sbjct: 131 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGEWIYFNSSRTGQMQIWRVRVDGSAV 190 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE-- 388 +RI+ +F P SP GD + F + + F + +M DG L + Sbjct: 191 ERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLNVRVRLMDMDGGNAETLFDLF 249 Query: 389 --DSNLQAPTWSPSGRSLIFSRK 409 + +P WSP G + R Sbjct: 250 GGQGTMNSPNWSPDGDEFAYVRY 272 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 82/188 (43%), Gaps = 14/188 (7%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K+++ ++ G R +T ++ + +SP+ + AY D + +Y MD Sbjct: 89 GKSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKGFAYCGIRD-QVFDIYSMDIDSGV 145 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 R+ + P +S +G+ + + M I+ V + +A ER+T++ + + Sbjct: 146 ET-RLTHGEGRNDGPDYSPDGEWIYFNSSRTGQMQIWRVRVDGSAVERITDSAYGDWFPH 204 Query: 309 YSPDSSQIVFESD--------REGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQG 358 SP ++VF S R+ ++ +M +G + + + + + P WSP G Sbjct: 205 PSPSGDKVVFVSYDADVFDHPRDLNVRVRLMDMDGGNAETLFDLFGGQGTMNSPNWSPDG 264 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 265 DEFAYVRY 272 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 12/204 (5%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 + + + R + + + + AP +S +GK L + D + S+ + + Sbjct: 4 SIEIFNIRTRQM-RVVWQTPQLFEAPNWSPDGKYLL--LNCDGLLYRLSLAGDPSPEKVD 60 Query: 298 TNTLFI-NISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 T I N SPD S SD GK +Y++ S G + ++++ + + W Sbjct: 61 TGFATICNNDHGISPDGSLYA-ISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--W 117 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD 413 SP G A+ + F I M D E L P +SP G + F+ + G Sbjct: 118 SPDGKGFAYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGEWIYFNSSRTGQ 177 Query: 414 TGSKLYSIDLNGRNETLINTPAYA 437 +++ + ++G I AY Sbjct: 178 M--QIWRVRVDGSAVERITDSAYG 199 Score = 43.1 bits (100), Expect = 0.094, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV----MDRDGANIRYLTP--SR 210 I+D Y +++FVS L V MD DG N L Sbjct: 192 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLNVRVRLMDMDGGNAETLFDLFGG 251 Query: 211 DQILFEPRFSPNQQKVAYATY 231 + P +SP+ + AY Y Sbjct: 252 QGTMNSPNWSPDGDEFAYVRY 272 >gi|308062403|gb|ADO04291.1| translocation protein TolB [Helicobacter pylori Cuz20] Length = 417 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 58/369 (15%), Positives = 137/369 (37%), Gaps = 24/369 (6%) Query: 64 KVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDR 123 K+ EV++ DL+ S F++ + + ++ V E ++ Sbjct: 48 KLHEVLANDLKTSQHFDV--------SQNKEQGAINYAELKDKKVHLVALVSVAVENGNK 99 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 + +L+DV + + AH ++ + + + R++ S+ Sbjct: 100 IS-RLKLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSK 158 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + GI +L + +++ P+++ +Q Y T E + Sbjct: 159 YIGPGITNIALADYTM---RYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPMILKY 215 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + I + + M + SS+G + L+S+ D D+Y D ++T Sbjct: 216 NIQKATH-ENIASSQGMAVVSSVSSDGSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPG 274 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLI 361 I++S + D + F SDR G +Y+ + +++ + ++ + D + Sbjct: 275 IDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRSNESIDAY---KDSV 331 Query: 362 AFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + F + ++ + R L + + Q P +S GR++++ +K + Sbjct: 332 VYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYA 391 Query: 416 SKLYSIDLN 424 L +D N Sbjct: 392 MGLILLDYN 400 >gi|149922524|ref|ZP_01910955.1| tol-pal system beta propeller repeat protein TolB [Plesiocystis pacifica SIR-1] gi|149816632|gb|EDM76126.1| tol-pal system beta propeller repeat protein TolB [Plesiocystis pacifica SIR-1] Length = 418 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 120/311 (38%), Gaps = 36/311 (11%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLC--VMDRDGANIRYLTPS-RDQILFEPRF 219 + ++ G+ ++ S+ +G + L + +GA LT ++ P Sbjct: 105 FPALLEPSGEGL--MILRSQPAGTGKTHDELLRLALGAEGATPVSLTAGFGPAMIRNPSR 162 Query: 220 SPNQQKVAYAT--YDDEDILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISV 276 P + + + + D+ R+ L D R+ P S +G+R Sbjct: 163 DPAGRFLVFESDANSFRDLYRLELSSNGGDAPSVLRLTGDEQGNFEPALSPDGERVAFVS 222 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSN 334 +D ++Y++ A RLT + + + +S D + F S R + ++V+ + Sbjct: 223 SRDGDAELYTMTADGGAPTRLTTSPGDDSAPRWSADGQTLAFVSARDLDRGMDVFVIPAA 282 Query: 335 GSDQKRISQDKEAS--YFDPVWSPQGDLIAFTKFSGEKFAIGVM--------------KK 378 G + K + ++A D SP G +AFT+ S A V+ + Sbjct: 283 GGEAKALLPARDAPVLVRDLSVSPDGTKLAFTELSQGAGAAVVVVSFPEGAVLARSRERG 342 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA 437 +G+ L++ + P WSP G+ L F+R G S + +D +GR L P+ Sbjct: 343 EGAGATPLID----EQPVWSPDGKHLAFTRG-SGPDRSDILRMDADGRERVNLTMGPSDN 397 Query: 438 SD----PQWVG 444 P+W Sbjct: 398 RGVHWLPRWSP 408 >gi|190892048|ref|YP_001978590.1| periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CIAT 652] gi|218514537|ref|ZP_03511377.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli 8C-3] gi|190697327|gb|ACE91412.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CIAT 652] Length = 276 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SP+ ++ + + +Y++ Sbjct: 45 LFRLPLDGGEVIQVDTGFAVNCNNDHGISPDGTEIVISDKSEFGKSSIYILPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G++ +D+ DIY++ + RLT+ N YS Sbjct: 105 VTENQPSYWHG--WSPDGRQLAYCGIRDDLFDIYTISVDGGVETRLTHGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +G+ ++++ D + ++F SP+ D + + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFA-HPSPKNDKVLILSYDPSVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVRY 271 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 86/201 (42%), Gaps = 15/201 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + + + RA + + ++ AP F+ +G L+ + ++ + L ++ Sbjct: 4 SVEIYNVKTGRA-REVWQTDRLVEAPNFAPDGSYLLL----NGDGLLFRLPLDGGEVIQV 58 Query: 298 TNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +N + SPD ++IV SD+ GK +Y++ G + +++++ + + Sbjct: 59 DTGFAVNCNNDHGISPDGTEIV-ISDKSEFGKSSIYILPIEGGTPRLVTENQPSYWHG-- 115 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ + F I + DG E L P +S G+ + F+ + G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGVETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 413 DTGSKLYSIDLNGRNETLINT 433 +++ I +G + + Sbjct: 176 LM--QIWRIHPDGTGLEQVTS 194 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + +++PD S ++ G L+ + +G + ++ Sbjct: 7 IYNVKTGRAREVWQTDRLVEAPNFAPDGSYLLLN----GDGLLFRLPLDGGEVIQVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + S K +I ++ +G RL+ E+ WSP GR Sbjct: 63 AVNCNNDHGISPDGTEIVISDKSEFGKSSIYILPIEGGTPRLVTENQPSYWHGWSPDGRQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + +D +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRDD--LFDIYTISVDGGVETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|18395017|ref|NP_564146.1| unknown protein [Arabidopsis thaliana] gi|5263318|gb|AAD41420.1|AC007727_9 F8K7.9 [Arabidopsis thaliana] gi|14334812|gb|AAK59584.1| unknown protein [Arabidopsis thaliana] gi|24030458|gb|AAN41381.1| unknown protein [Arabidopsis thaliana] gi|332192016|gb|AEE30137.1| uncharacterized protein [Arabidopsis thaliana] Length = 703 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 70/396 (17%), Positives = 136/396 (34%), Gaps = 57/396 (14%) Query: 81 LISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 ++ S + P + F S + + G + VE L+D+ + + + Sbjct: 284 PVTTKSVTIQRVTPPGLHAFTPATSPNNNNFIAVATRRPGSEIRHVE--LFDL-KKNEFV 340 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 SP S D +GD R + N L + DG Sbjct: 341 ELTRLVSPKSHHFNPFLSPDSSRVGYHSCRGDATGRKTPRNLLQSLKTTSNDLSLFRFDG 400 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 A P SP + A+ ++ V++++ + + M Sbjct: 401 A--------------FPSISPEGDRFAFVSFTG-----VFVVNPDGSGLRQLL---PQMG 438 Query: 261 LAPRFSSNGKRALISVQKD------EAMDIYSVDLQS----NATERLTNTLFINISASYS 310 + + + +DI ++++ + A ++LT T N S Sbjct: 439 FGTVWDPIRHGIVYTSSGPALAPGKSQIDILAINVDAPSPATAVKKLTTTGENNAFPWPS 498 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFTKFSG 368 PD +IVF S R G + LY+M + + + + ++ D + WSP G+ I F Sbjct: 499 PDGKRIVFRSARSGTKNLYIMDAEKGESGGLFRLTNGNWNDTIATWSPDGNWIVFASNRE 558 Query: 369 EK----FAIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDGDTG------ 415 I V+ DG+ R L ++ P +SP + ++F+ G + Sbjct: 559 FPGTLLMNIYVVHPDGTGLRKLAQNLTGLVSMHPMFSPDSKRIVFTTIYAGISAEQIGNP 618 Query: 416 ------SKLYSIDLNGRNETLINTPA-YASDPQWVG 444 S++++++L+G T + + P W Sbjct: 619 HFNVPSSEIFTVNLDGSGLTRLTHNSVEDGPPMWFP 654 Score = 42.3 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 83/279 (29%), Gaps = 39/279 (13%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF---------EPRFSPNQQKV 226 +++V+E + + + D G+ I+ S ++ P + Sbjct: 101 HLIYVTERAGTPSLNYDVVHSDNVGSRIQVPLFSGEEQQSGMNVNSMKDTPVLTNGYLVH 160 Query: 227 AYATYDDEDILRVYLMDTRI---DRAPKRIGNFRSMILAPRFSSNGKRALISV--QKDEA 281 + + + ++ +R+ +P S +GK ++ +K Sbjct: 161 VSTHENPGKPMASWAAVYSTELRTKSTRRLTPLGIADFSPAVSPSGKWTAVASFGEKGWT 220 Query: 282 MDIYSVDLQSNATERLTNTLFINIS-------ASYSPDSSQIVFE--SDREGKEQLYVMQ 332 + ++ S+ LT + + D S + F SD + Sbjct: 221 WSMVEKEISSDVYVFLTQDGTQRVKVVEQGGWPRWV-DDSTLYFHRKSDDGWISVYRAIL 279 Query: 333 SNGSDQ-------KRISQDKEASYFDPVWSP-QGDLIAFTKFSGEK--FAIGVMKKDGSQ 382 +R++ + F P SP + IA + + ++ Sbjct: 280 PKTGPVTTKSVTIQRVTPPGLHA-FTPATSPNNNNFIAVATRRPGSEIRHVELFDLKKNE 338 Query: 383 ----ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 RL+ S+ P SP + + + TG K Sbjct: 339 FVELTRLVSPKSHHFNPFLSPDSSRVGYHSCRGDATGRK 377 >gi|294146610|ref|YP_003559276.1| putative amidohydrolase [Sphingobium japonicum UT26S] gi|292677027|dbj|BAI98544.1| putative amidohydrolase [Sphingobium japonicum UT26S] Length = 992 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 82/191 (42%), Gaps = 9/191 (4%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 +A S +GK + +Q ++ + + +R+T+ +SPD S+ Sbjct: 47 HEGTSMAVSVSPDGKWLAVDLQGS----LWIIPAKGGKAKRITDYFNDARQPVWSPDGSR 102 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + + R+G L+ ++ +GSD ++++Q +P WSP G IAF+ + I Sbjct: 103 LAYFAYRDGGYDLWTIKPDGSDMRKLTQ-GAWDDREPAWSPDGRTIAFSSDRSGNYDIWT 161 Query: 376 MKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT 433 + + + + + P+WSP G S+ ++ G T LY+ + +G+ L Sbjct: 162 LDVASGAVKQVSSNPREDRMPSWSPDGASIAYAGIDGGKTA--LYATTVADGKESLLKQV 219 Query: 434 PAYASDPQWVG 444 P + Sbjct: 220 AGRVDAPSYGP 230 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 8/215 (3%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + SP+ + +A D+ + KRI ++ + Sbjct: 37 GGEKPIAFDVHEGTSMAVSVSPDGKWLAV------DLQGSLWIIPAKGGKAKRITDYFND 90 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P +S +G R +D D++++ + +LT + + ++SPD I F Sbjct: 91 ARQPVWSPDGSRLAYFAYRDGGYDLWTIKPDGSDMRKLTQGAWDDREPAWSPDGRTIAFS 150 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G ++ + K++S + P WSP G IA+ G K A+ Sbjct: 151 SDRSGNYDIWTLDVASGAVKQVSSNPREDRM-PSWSPDGASIAYAGIDGGKTALYATTVA 209 Query: 380 GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGD 413 +E LL + + AP++ P+G+ + G Sbjct: 210 DGKESLLKQVAGRVDAPSYGPTGQLAYVVQDAKGS 244 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 22/202 (10%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I+ P S +G R D +Y + + A E LT ++ ++SPD I + Sbjct: 321 IVHPTISPDGSRIAFVALGD----LYLMSSKGGAPENLTRDAALDADPAWSPDGQSIAYT 376 Query: 320 SDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVM 376 SD+ G QL++ ++++ WSP G IAF G + V+ Sbjct: 377 SDKGGGLPQLWMRDLKTGKDRKLTSIDTQPLGA-AWSPDGSRIAFLDVDGRWGVAGVCVV 435 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFS-----RKKDGDTGSKLYSIDLNGRNETL 430 + L +PTWSP G+ + + + +++Y I +G+ E Sbjct: 436 DVATGKITRLQASLGQPGSPTWSPDGKYVAIALSYKYSNSFREGTNQIYVIPADGKGEPF 495 Query: 431 INTP--------AYASDPQWVG 444 P P W Sbjct: 496 WQIPQANAGTDTRGGGGPAWSP 517 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 66/358 (18%), Positives = 116/358 (32%), Gaps = 81/358 (22%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A I+D + SR+ + + L + DG+++R LT Sbjct: 81 AKRITDYFNDARQPVWSPDGSRLAYFAYRDGG----YDLWTIKPDGSDMRKLTQG-AWDD 135 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EP +SP+ + +A+++ D ++ +D A K++ + P +S +G Sbjct: 136 REPAWSPDGRTIAFSS-DRSGNYDIWTLDVASG-AVKQVSSNPREDRMPSWSPDGASIAY 193 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + +Y+ + L + SY P D +G ++ + Sbjct: 194 AGIDGGKTALYATTVADGKESLLKQVAGRVDAPSYGPTGQLAYVVQDAKGSH----LEVD 249 Query: 335 GSDQK--------RISQDKEASYF------------------------------------ 350 G RIS K Y+ Sbjct: 250 GKSVSAAENVFPFRISWGKGGYYYVSDGKIRYRSGARLSTIDFAATLEAVKPSYARAKRD 309 Query: 351 -------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PT 396 P SP G IAF + +M G L D+ L A P Sbjct: 310 WDSTAPRKALGIVHPTISPDGSRIAFVALGD----LYLMSSKGGAPENLTRDAALDADPA 365 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN------TPAYASDPQWVGFMD 447 WSP G+S+ ++ K G +L+ DL G++ L + A++ D + F+D Sbjct: 366 WSPDGQSIAYTSDKGGGL-PQLWMRDLKTGKDRKLTSIDTQPLGAAWSPDGSRIAFLD 422 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 115/354 (32%), Gaps = 47/354 (13%) Query: 75 RSD-VFNLISQDSFKQKITNPDSIPRFQDWNS---LGAQVLVTGRVIKEGKDRLRVEFRL 130 RS + I + + + P +DW+S A +V + +G R+ F Sbjct: 282 RSGARLSTIDFAATLEAV-KPSYARAKRDWDSTAPRKALGIVHPTISPDGS---RIAF-- 335 Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 V + +P + + A +D ++ ++ + G Sbjct: 336 --VALGDLYLMSSKGGAPENLTRDAALDAD----------PAWSPDGQSIAYTSDKGGGL 383 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L + D R LT S D +SP+ ++A+ D + + Sbjct: 384 PQLWMRDLKTGKDRKLT-SIDTQPLGAAWSPDGSRIAFLDVDGRWGVAGVCVVDVATGKI 442 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQ-------KDEAMDIYSVDLQSNATERL------ 297 R+ +P +S +GK I++ ++ IY + Sbjct: 443 TRLQASLGQPGSPTWSPDGKYVAIALSYKYSNSFREGTNQIYVIPADGKGEPFWQIPQAN 502 Query: 298 --TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 T+T ++SPD +++ EG +++ ++++G + P W+ Sbjct: 503 AGTDTRG-GGGPAWSPDGTKMAAIY--EGLLKIWPVEADGKPMGPPRSYTSEIAYFPTWT 559 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 I + + + + R + D + + P+GR++I Sbjct: 560 ADSRTILYQSSD----RLKTIDTETGVIREIPVDLSYRLA--IPTGRTVIHVSN 607 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 44/156 (28%) Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDL------------------------------ 360 + G ++ E + SP G Sbjct: 33 LPPPGGEKPIAFDVHEGTSMAVSVSPDGKWLAVDLQGSLWIIPAKGGKAKRITDYFNDAR 92 Query: 361 ----------IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRK 409 +A+ + + + +K DGS R L + + + P WSP GR++ FS Sbjct: 93 QPVWSPDGSRLAYFAYRDGGYDLWTIKPDGSDMRKLTQGAWDDREPAWSPDGRTIAFSSD 152 Query: 410 KDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + G ++++D+ +G + + + P P W Sbjct: 153 RSG--NYDIWTLDVASGAVKQVSSNPREDRMPSWSP 186 >gi|218679898|ref|ZP_03527795.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CIAT 894] Length = 276 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SP+ ++ + + +Y++ Sbjct: 45 LYRLPLDGGEVVQVDTGFAVNCNNDHGISPDGTEIVISDKTEFGKSSIYILPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G++ +D+ DIY++ + RLT N YS Sbjct: 105 VTENQPSYWHG--WSPDGRQLAYCGIRDDFFDIYTISVDGGVETRLTYGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +G+ ++++ D + ++F SP+ D + + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFA-HPSPKNDKVLILSYDPGVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M+ DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMEMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVRY 271 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 86/201 (42%), Gaps = 15/201 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + + + RA + + ++ AP F+ +G L+ + +Y + L ++ Sbjct: 4 SVEIYNVKTGRA-REVWQTDRLVEAPNFAPDGSYLLL----NGDGLLYRLPLDGGEVVQV 58 Query: 298 TNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +N + SPD ++IV SD+ GK +Y++ G + +++++ + + Sbjct: 59 DTGFAVNCNNDHGISPDGTEIV-ISDKTEFGKSSIYILPIEGGTPRLVTENQPSYWHG-- 115 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ + F I + DG E L P +S G+ + F+ + G Sbjct: 116 WSPDGRQLAYCGIRDDFFDIYTISVDGGVETRLTYGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 413 DTGSKLYSIDLNGRNETLINT 433 +++ I +G + + Sbjct: 176 LM--QIWRIHPDGTGLEQVTS 194 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + +++PD S ++ G LY + +G + ++ Sbjct: 7 IYNVKTGRAREVWQTDRLVEAPNFAPDGSYLLLN----GDGLLYRLPLDGGEVVQVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + K K +I ++ +G RL+ E+ WSP GR Sbjct: 63 AVNCNNDHGISPDGTEIVISDKTEFGKSSIYILPIEGGTPRLVTENQPSYWHGWSPDGRQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + +D +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRDDFF--DIYTISVDGGVETRLTYGEGRNDGPDYSADGQWIYF 169 >gi|332534941|ref|ZP_08410760.1| hypothetical protein PH505_bx00100 [Pseudoalteromonas haloplanktis ANT/505] gi|332035614|gb|EGI72105.1| hypothetical protein PH505_bx00100 [Pseudoalteromonas haloplanktis ANT/505] Length = 1059 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 25/210 (11%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + + S +GK + + D IY++ + +LT+ + + +SP+ Sbjct: 44 ISVEQGTWMNIDISPDGKTVVFDLLGD----IYTMPMSGGTATKLTSDIAWQMQPRFSPN 99 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFS 367 I F SD+ G + +++M NG +Q ++ + P WSP GD + S Sbjct: 100 GKSIAFTSDQGGGDNIWIMDLNGENQHAVTDETFRLLNSPAWSPDGDYLVARKHFTASRS 159 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTG 415 + + K G + L + N Q P +SP GR + FS D+ Sbjct: 160 LGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSV 219 Query: 416 SKLYSIDL----NGRNETLINTPAYASDPQ 441 + +Y I G ET+I+T A P Sbjct: 220 AGIYKIKRYDRETGEIETIIDTMGGAIRPT 249 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 30/235 (12%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + V + D +Y M A K + + + + PRFS NGK + + Sbjct: 56 ISPDGKTVVFDLLGD-----IYTMPMSGGTATK-LTSDIAWQMQPRFSPNGKSIAFTSDQ 109 Query: 279 DEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQ 332 +I+ +DL +T+ F + S ++SPD +V F + R G ++++ Sbjct: 110 GGGDNIWIMDLNGENQHAVTDETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYH 169 Query: 333 SNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMK 377 G ++++ + +P++SP G + F+ + + I Sbjct: 170 KAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYD 229 Query: 378 KDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 ++ + +++ PT SP G+ L + ++ D T LY DL T + Sbjct: 230 RETGEIETIIDTMGGAIRPTPSPDGKKLAYIKRDDFQT--SLYLYDLTSGEHTKL 282 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 55/396 (13%), Positives = 120/396 (30%), Gaps = 96/396 (24%) Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 ++G + + A ++ DI + I F S+ + +MD Sbjct: 67 LLGDIYTMPMSGG--TATKLTSDIAWQMQPRFSPNGKSIAFTSDQGGGDN----IWIMDL 120 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRI- 253 +G N +T ++L P +SP+ + + V+L + + Sbjct: 121 NGENQHAVTDETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTK 180 Query: 254 -GNFRSMILAPRFSSNGKRALIS----------VQKD---EAMDIYSVDLQSNATERLTN 299 N + + P FS +G+ S KD I D ++ E + + Sbjct: 181 RENDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYDRETGEIETIID 240 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----------SQDKEASY 349 T+ I + SPD ++ + + + LY+ + ++ + Y Sbjct: 241 TMGGAIRPTPSPDGKKLAYIKRDDFQTSLYLYDLTSGEHTKLYDKLERDMQETWAIHGVY 300 Query: 350 FDPVWSPQGDLIAF------------------------------------TKFSGEKFAI 373 W+P + + F ++F + Sbjct: 301 PTIAWTPDNEELVFWAGGTIHKLDVADKSVKTIPFKVQTSKKIQKAVRFTQNLDTDEFDV 360 Query: 374 GV-----MKKDG------------------SQERLLVEDSNLQ--APTWSPSGRSLIFSR 408 + + DG + + L + ++ P +S G+ ++++ Sbjct: 361 KMLRNVQVSPDGETAIFEALGHIYKRDLESGKIKRLTKQTDHYELFPQYSRDGKKIVYTT 420 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D GS +GR +T+ P +P + Sbjct: 421 WDDNKQGSVRVVSARSGRGDTVTKEPGKYVEPTFSP 456 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 51/267 (19%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAP 263 P SP+ +K+AY DD +YL D K + Sbjct: 245 AIRPTPSPDGKKLAYIKRDDFQT-SLYLYDLTSGEHTKLYDKLERDMQETWAIHGVYPTI 303 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATE----------------RLTNTLFIN--- 304 ++ + + + I+ +D+ + + R T L + Sbjct: 304 AWTPDNEELVFWA----GGTIHKLDVADKSVKTIPFKVQTSKKIQKAVRFTQNLDTDEFD 359 Query: 305 ----ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + SPD +FE+ +Y KR+++ + P +S G Sbjct: 360 VKMLRNVQVSPDGETAIFEA----LGHIYKRDLESGKIKRLTKQTDHYELFPQYSRDGKK 415 Query: 361 IAFTKFSGEKF-AIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG------ 412 I +T + K ++ V+ G + + E PT+SP G+++++ + G Sbjct: 416 IVYTTWDDNKQGSVRVVSARSGRGDTVTKEPGKYVEPTFSPDGKTVVYRKATGGSILNPK 475 Query: 413 -DTGSKLYSIDLNGRNETLINTPAYAS 438 +YS+ G LI+ Y Sbjct: 476 WSLNPGVYSVSAKGGKSELISKSGYQP 502 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 20/200 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + +Y D + + L P++S +GK+ + + D Sbjct: 369 SPDGETAIFEALGH-----IYKRDLESGKIKRLTKQTDHYELFPQYSRDGKKIVYTTWDD 423 Query: 280 E-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQLY 329 + V +S + +T + ++SPD +V+ G +Y Sbjct: 424 NKQGSVRVVSARSGRGDTVTKEPGKYVEPTFSPDGKTVVYRKATGGSILNPKWSLNPGVY 483 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + G + IS+ F + F K + V++ + + R L E Sbjct: 484 SVSAKGGKSELISKSGYQPQFG-----DANDRVFIMSPWPKPTLSVVELESKKVRKLYES 538 Query: 390 SNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 539 EHATEFRVSPDGQYLAFAER 558 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 + ++ + SP G + F I M G L D Q P +SP+G+S+ Sbjct: 48 QGTWMNIDISPDGKTVVFDLLGD----IYTMPMSGGTATKLTSDIAWQMQPRFSPNGKSI 103 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 F+ + G G ++ +DLNG N+ + + + P W Sbjct: 104 AFTSDQGG--GDNIWIMDLNGENQHAVTDETFRLLNSPAWSP 143 >gi|88812601|ref|ZP_01127849.1| WD40-like Beta Propeller [Nitrococcus mobilis Nb-231] gi|88790195|gb|EAR21314.1| WD40-like Beta Propeller [Nitrococcus mobilis Nb-231] Length = 358 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 109/287 (37%), Gaps = 46/287 (16%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD------- 232 + +S G +++ MD +G N+R ++ + +PN + + YA+ Sbjct: 70 IFQSTRDGRACDAIYRMDTEGHNVRRVSSGKGATTCSF-IAPNGRSIIYASTHLAGERCP 128 Query: 233 -DEDILRVYLMDTRIDR----------APKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 D + Y+ P R+ + +S G + + + + Sbjct: 129 TKPDRSQGYVWPLYPGYDIFRAGPEGENPARLTDTPGYDAEGVYSPLGDKIVFTSMRTGD 188 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------------------R 322 ++++ ++ + E+LT+ + A +S D +V+ + R Sbjct: 189 LELFMMNPDGSTVEQLTDEPGYDGGAFFSRDGQWLVWRASRPQDKALEDYRRLLRQGLVR 248 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKK 378 G+ ++Y+M N +++ + A+ F P W P G I F+ SG F + +M Sbjct: 249 PGRLEIYIMNLNERQPIQLTDNGAAN-FAPYWHPDGQHIVFSSNMHDPSGRNFDLYLMDV 307 Query: 379 DGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGD--TGSKLYSID 422 + L P +S G+ L+F+ ++G + ++ +D Sbjct: 308 ETRALEQLTYYPGFDGFPMFSHDGKKLVFASNRNGTVAGETNVFIVD 354 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 96/286 (33%), Gaps = 46/286 (16%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +IR LT FS + ++ + + D +R+ + + Sbjct: 46 QHIRQLTFGGQNAEAY--FSFDGTELIFQSTRDGRACDAIYRMDTEGHNVRRVSSGKGAT 103 Query: 261 LAPRFSSNGKRALISVQK--------------------DEAMDIYSVDLQSNATERLTNT 300 + NG+ + + DI+ + RLT+T Sbjct: 104 TCSFIAPNGRSIIYASTHLAGERCPTKPDRSQGYVWPLYPGYDIFRAGPEGENPARLTDT 163 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + YSP +IVF S R G +L++M +GS ++++ D+ +S G Sbjct: 164 PGYDAEGVYSPLGDKIVFTSMRTGDLELFMMNPDGSTVEQLT-DEPGYDGGAFFSRDGQW 222 Query: 361 IAFTK-------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPS 400 + + + I +M + Q L ++ AP W P Sbjct: 223 LVWRASRPQDKALEDYRRLLRQGLVRPGRLEIYIMNLNERQPIQLTDNGAANFAPYWHPD 282 Query: 401 GRSLIFSRKKDGDTGSK--LYSIDLNGRN-ETLINTPAYASDPQWV 443 G+ ++FS +G LY +D+ R E L P + P + Sbjct: 283 GQHIVFSSNMHDPSGRNFDLYLMDVETRALEQLTYYPGFDGFPMFS 328 >gi|327190629|gb|EGE57717.1| putative periplasmic component of the Tol biopolymer transport system protein [Rhizobium etli CNPAF512] Length = 276 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SP+ ++ + + +Y++ Sbjct: 45 LFRLPLDGGEVIQVDTGFAVNCNNDHGISPDGTEIVISDKSEFGKSSIYILPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G++ +D+ DIY++ + RLT+ N YS Sbjct: 105 VTENQPSYWHG--WSPDGRQLAYCGIRDDLFDIYTISVDGGIETRLTHGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +G+ ++++ D + ++F SP+ D + + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFA-HPSPKNDKVLILSYDPSVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGDEFAYVRY 271 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 86/201 (42%), Gaps = 15/201 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + + + RA + + ++ AP F+ +G L+ + ++ + L ++ Sbjct: 4 SVEIYNVKTGRA-REVWQTDRLVEAPNFAPDGSYLLL----NGDGLLFRLPLDGGEVIQV 58 Query: 298 TNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +N + SPD ++IV SD+ GK +Y++ G + +++++ + + Sbjct: 59 DTGFAVNCNNDHGISPDGTEIV-ISDKSEFGKSSIYILPIEGGTPRLVTENQPSYWHG-- 115 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ + F I + DG E L P +S G+ + F+ + G Sbjct: 116 WSPDGRQLAYCGIRDDLFDIYTISVDGGIETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 413 DTGSKLYSIDLNGRNETLINT 433 +++ I +G + + Sbjct: 176 LM--QIWRIHPDGTGLEQVTS 194 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + +++PD S ++ G L+ + +G + ++ Sbjct: 7 IYNVKTGRAREVWQTDRLVEAPNFAPDGSYLLLN----GDGLLFRLPLDGGEVIQVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + S K +I ++ +G RL+ E+ WSP GR Sbjct: 63 AVNCNNDHGISPDGTEIVISDKSEFGKSSIYILPIEGGTPRLVTENQPSYWHGWSPDGRQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + +D +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRDD--LFDIYTISVDGGIETRLTHGEGRNDGPDYSADGQWIYF 169 >gi|86357985|ref|YP_469877.1| putative periplasmic component of the Tol biopolymer transport system [Rhizobium etli CFN 42] gi|86282087|gb|ABC91150.1| putative periplasmic component of the Tol biopolymer transport system [Rhizobium etli CFN 42] Length = 275 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SP+ ++ + + +Y++ Sbjct: 45 LFRLPLDGGEVVRVDTGFAVNCNNDHGISPDGTEIVISDKSEFGKSAIYILPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G++ +D+ DIY++ + A RLT+ N YS Sbjct: 105 VTRNQPSYWHG--WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +G+ ++++ D + ++F SP+ D + + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRIHPDGTGLEQVTSDNQGNWFA-HPSPRNDKVLILSYDPSVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 17/206 (8%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + +Y + T + + ++ AP FS +G L+ + ++ + L Sbjct: 1 MRSSVEIYNVGT---GRAREVWQTDRLVEAPNFSPDGSYLLL----NGDGLLFRLPLDGG 53 Query: 293 ATERLTNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEAS 348 R+ +N + SPD ++IV SD+ GK +Y++ G + +++++ + Sbjct: 54 EVVRVDTGFAVNCNNDHGISPDGTEIV-ISDKSEFGKSAIYILPIEGGTPRLVTRNQPSY 112 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFS 407 + WSP G +A+ + F I + DG E L P +S G+ + F+ Sbjct: 113 WHG--WSPDGRQLAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFN 170 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINT 433 + G +++ I +G + + Sbjct: 171 SSRTGLM--QIWRIHPDGTGLEQVTS 194 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++ + + T + + ++SPD S ++ G L+ + +G + R+ Sbjct: 7 IYNVGTGRAREVWQTDRLVEAPNFSPDGSYLLLN----GDGLLFRLPLDGGEVVRVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + S K AI ++ +G RL+ + WSP GR Sbjct: 63 AVNCNNDHGISPDGTEIVISDKSEFGKSAIYILPIEGGTPRLVTRNQPSYWHGWSPDGRQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + +D +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRDD--LFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYF 169 Score = 38.8 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 192 SLCVMDRDGANIRYLTP--SRDQILFEPRFSPNQQKVAYATY 231 L +MD DG N++ L + P +SP+ ++ AY Y Sbjct: 230 RLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 >gi|254444922|ref|ZP_05058398.1| hypothetical protein VDG1235_3165 [Verrucomicrobiae bacterium DG1235] gi|198259230|gb|EDY83538.1| hypothetical protein VDG1235_3165 [Verrucomicrobiae bacterium DG1235] Length = 504 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 92/208 (44%), Gaps = 17/208 (8%) Query: 220 SPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGNF-RSMILAPRFSSNGKRALISVQ 277 S + ++A + + D +Y + P++I + ++ + K+ + + Q Sbjct: 295 SFDGSQMAISHHLGDARTSTLYTLPVSGSDNPRQITDPANGHSFLHGWTPDAKKLIFTGQ 354 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +++ +I+++D+++ LTN ++ Y+PD + F S R G Q++ M+++GS+ Sbjct: 355 RNDQWNIWTIDIETKKEVALTNNNTLDDGPEYTPDGKYVYFNSVRTGTMQIWRMKADGSE 414 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFS----------GEKFAIGVMKKDGSQERLLV 387 Q++++ D +F P +SP G + + F +K + +M G + + Sbjct: 415 QEQVTFDAYNDWF-PHFSPDGKWMVYISFPVDIDPNDHPFYKKVYLRLMPASGGVPKTIA 473 Query: 388 ----EDSNLQAPTWSPSGRSLIFSRKKD 411 + P+WSP + F Sbjct: 474 YLYGGQGTINVPSWSPDSSKIAFVSNTQ 501 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 26/260 (10%) Query: 205 YLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 ++ +++ RFS + + + Y D R+ +MD K + N + I Sbjct: 189 FICSHNAEVMETARFSNVRVVIPAATDFQPYRDYIGSRLEIMDVHSG-HRKVLHNAPNSI 247 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--INISASYSPDSSQIVF 318 AP ++ +GK + + +Y+ DL S + L N S D SQ+ Sbjct: 248 QAPNWTIDGKTLIY----NSEGKLYNYDLASGSISELNTGFADQNNNDHVLSFDGSQMA- 302 Query: 319 ESDREGKEQ---LYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 S G + LY + +GS + ++I+ F W+P + FT +++ I Sbjct: 303 ISHHLGDARTSTLYTLPVSGSDNPRQITDPANGHSFLHGWTPDAKKLIFTGQRNDQWNIW 362 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN- 432 + + +E L + + P ++P G+ + F+ + G +++ + +G + + Sbjct: 363 TIDIETKKEVALTNNNTLDDGPEYTPDGKYVYFNSVRTGTM--QIWRMKADGSEQEQVTF 420 Query: 433 ------TPAYASDPQWVGFM 446 P ++ D +W+ ++ Sbjct: 421 DAYNDWFPHFSPDGKWMVYI 440 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 80/195 (41%), Gaps = 15/195 (7%) Query: 186 SGIIKNSLCVMDRDGA-NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 ++L + G+ N R +T + F ++P+ +K+ + + D ++ +D Sbjct: 308 GDARTSTLYTLPVSGSDNPRQITDPANGHSFLHGWTPDAKKLIFTGQRN-DQWNIWTIDI 366 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + + N ++ P ++ +GK + + M I+ + + E++T + + Sbjct: 367 ETKKEVA-LTNNNTLDDGPEYTPDGKYVYFNSVRTGTMQIWRMKADGSEQEQVTFDAYND 425 Query: 305 ISASYSPDSSQIVFES---DREGKEQ-------LYVMQSNGSDQKRIS--QDKEASYFDP 352 +SPD +V+ S D + + L +M ++G K I+ + + P Sbjct: 426 WFPHFSPDGKWMVYISFPVDIDPNDHPFYKKVYLRLMPASGGVPKTIAYLYGGQGTINVP 485 Query: 353 VWSPQGDLIAFTKFS 367 WSP IAF + Sbjct: 486 SWSPDSSKIAFVSNT 500 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 167 TGEKGDFNSRILFVSESVVSG---IIKNSLCVMDRDGANIRYL--TPSRDQILFEPRFSP 221 G + I F + + K L +M G + + + P +SP Sbjct: 430 FSPDGKWMVYISFPVDIDPNDHPFYKKVYLRLMPASGGVPKTIAYLYGGQGTINVPSWSP 489 Query: 222 NQQKVAYAT 230 + K+A+ + Sbjct: 490 DSSKIAFVS 498 >gi|209549595|ref|YP_002281512.1| hypothetical protein Rleg2_2002 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535351|gb|ACI55286.1| WD40 domain protein beta Propeller [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 16/230 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG + + SP+ ++ + + +Y++ Sbjct: 45 LWRLPLDGGEVVKVDTGFAVNCNNDHGISPDGTEIVISDKTEFGKSTIYVLPIEGGTPRL 104 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 N S +S +G + +++ DIY++ + A RLT+ N YS Sbjct: 105 VTENQPSYWHG--WSPDGCQLAYCGIRNDLFDIYTISVDGGAETRLTHGEGRNDGPDYSA 162 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D I F S R G Q++ + +GS ++++ D + ++F SP D + + F Sbjct: 163 DGQWIYFNSSRTGLMQIWRIHPDGSGLEQVTSDNQGNWFA-HPSPSNDKVLILSYDPSVF 221 Query: 372 --------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + +M DG + L E + P WSP G + R Sbjct: 222 DHPRDLDVRLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 86/201 (42%), Gaps = 15/201 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + + R RA + + ++ AP FS +G L+ + ++ + L ++ Sbjct: 4 SVEIYNVRTGRA-REVWQTDKLVEAPNFSPDGCYLLL----NGDGLLWRLPLDGGEVVKV 58 Query: 298 TNTLFINIS--ASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +N + SPD ++IV SD+ GK +YV+ G + +++++ + + Sbjct: 59 DTGFAVNCNNDHGISPDGTEIV-ISDKTEFGKSTIYVLPIEGGTPRLVTENQPSYWHG-- 115 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 WSP G +A+ + F I + DG E L P +S G+ + F+ + G Sbjct: 116 WSPDGCQLAYCGIRNDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTG 175 Query: 413 DTGSKLYSIDLNGRNETLINT 433 +++ I +G + + Sbjct: 176 LM--QIWRIHPDGSGLEQVTS 194 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 15/169 (8%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + ++SPD ++ G L+ + +G + ++ Sbjct: 7 IYNVRTGRAREVWQTDKLVEAPNFSPDGCYLLLN----GDGLLWRLPLDGGEVVKVDTGF 62 Query: 346 EASYFDPV-WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 + + SP G I + K K I V+ +G RL+ E+ WSP G Sbjct: 63 AVNCNNDHGISPDGTEIVISDKTEFGKSTIYVLPIEGGTPRLVTENQPSYWHGWSPDGCQ 122 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 L + ++ +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 LAYCGIRND--LFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYF 169 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 192 SLCVMDRDGANIRYLTP--SRDQILFEPRFSPNQQKVAYATY 231 L +MD DG N++ L + P +SP+ ++ AY Y Sbjct: 230 RLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 271 >gi|159184859|ref|NP_354645.2| tolB protein [Agrobacterium tumefaciens str. C58] gi|159140140|gb|AAK87430.2| tolB protein [Agrobacterium tumefaciens str. C58] Length = 276 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 15/203 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ A + + +YL+ + N S +S +GK + Sbjct: 73 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--WSPDGKSFTYCGIR 130 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D+ DIYS+D+ S RLT+ N YSPD I F S R G+ Q++ ++ +GS Sbjct: 131 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 190 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE-- 388 +RI+ +F P SP GD + F + + F + +M DG L + Sbjct: 191 ERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF 249 Query: 389 --DSNLQAPTWSPSGRSLIFSRK 409 + +P WSP G + R Sbjct: 250 GGQGTMNSPNWSPDGDEFAYVRY 272 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K+++ ++ G R +T ++ + +SP+ + Y D + +Y MD Sbjct: 89 GKSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGV 145 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 R+ + P +S +G+ + + M I+ V + ++ ER+T++ + + Sbjct: 146 ET-RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH 204 Query: 309 YSPDSSQIVFESD--------REGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQG 358 SP ++VF S R+ ++ +M +G + + + + + P WSP G Sbjct: 205 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 264 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 265 DEFAYVRY 272 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 16/206 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN-ATER 296 + + + R + + + + AP +S +GK L+ + +Y + L + + E+ Sbjct: 4 SIEIFNIRTRKM-RVVWQTPELFEAPNWSPDGKYLLL----NSEGLLYRLSLAGDPSPEK 58 Query: 297 LTNTLFI--NISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + N SPD + SD GK +Y++ S G + ++++ + + Sbjct: 59 VDTGFATICNNDHGISPDGALYA-ISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG- 116 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 WSP G + + F I M D E L P +SP GR + F+ + Sbjct: 117 -WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT 175 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYA 437 G +++ + ++G + I AY Sbjct: 176 GQM--QIWRVRVDGSSVERITDSAYG 199 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL----CVMDRDGANIRYLTP--SR 210 I+D Y +++FVS L +MD DG N+ L Sbjct: 192 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG 251 Query: 211 DQILFEPRFSPNQQKVAYATY 231 + P +SP+ + AY Y Sbjct: 252 QGTMNSPNWSPDGDEFAYVRY 272 >gi|315126925|ref|YP_004068928.1| hypothetical protein PSM_A1853 [Pseudoalteromonas sp. SM9913] gi|315015439|gb|ADT68777.1| hypothetical protein PSM_A1853 [Pseudoalteromonas sp. SM9913] Length = 1057 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 25/210 (11%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + + S +G+ + + D IY++ + ++T+ + + +SPD Sbjct: 44 ISVEQGTWMNVDISPDGETLVFDLLGD----IYTMPMSGGKATKITSDIAWQMQPRFSPD 99 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFS 367 I F SD+ G + +++M NG +Q ++ + P WSP GD + S Sbjct: 100 GKHIAFTSDQGGGDNIWIMDVNGENQTAVTDETFRLLNSPAWSPDGDYLVARKHFTASRS 159 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTG 415 + + K G + L + N Q P +SP GR + FS D+ Sbjct: 160 LGAGEVWLYHKAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSV 219 Query: 416 SKLYSIDL----NGRNETLINTPAYASDPQ 441 + +Y I G ET+I+ A P Sbjct: 220 AGIYKIKRYDRETGDIETIISGMGGAIRPT 249 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 30/235 (12%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + + D +Y M +A K I + + + PRFS +GK + + Sbjct: 56 ISPDGETLVFDLLGD-----IYTMPMSGGKATK-ITSDIAWQMQPRFSPDGKHIAFTSDQ 109 Query: 279 DEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQ 332 +I+ +D+ +T+ F + S ++SPD +V F + R G ++++ Sbjct: 110 GGGDNIWIMDVNGENQTAVTDETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYH 169 Query: 333 SNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMK 377 G ++++ + +P++SP G + F+ + + I Sbjct: 170 KAGGKGVQLTKRENDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYD 229 Query: 378 KDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 ++ E ++ PT SP G+ L + ++ D T LY DL T + Sbjct: 230 RETGDIETIISGMGGAIRPTPSPDGKKLAYIKRDDFQT--SLYLYDLTSGEHTKL 282 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 54/396 (13%), Positives = 122/396 (30%), Gaps = 96/396 (24%) Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 ++G + + + A I+ DI + I F S+ + +MD Sbjct: 67 LLGDIYTMPMSGGK--ATKITSDIAWQMQPRFSPDGKHIAFTSDQGGGDN----IWIMDV 120 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRI- 253 +G N +T ++L P +SP+ + + V+L + + Sbjct: 121 NGENQTAVTDETFRLLNSPAWSPDGDYLVARKHFTASRSLGAGEVWLYHKAGGKGVQLTK 180 Query: 254 -GNFRSMILAPRFSSNGKRALIS----------VQKD---EAMDIYSVDLQSNATERLTN 299 N + + P FS +G+ S KD I D ++ E + + Sbjct: 181 RENDQKDLGEPMFSPDGRYVYFSHDATPGKTFHYSKDSVAGIYKIKRYDRETGDIETIIS 240 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----------SQDKEASY 349 + I + SPD ++ + + + LY+ + ++ + Y Sbjct: 241 GMGGAIRPTPSPDGKKLAYIKRDDFQTSLYLYDLTSGEHTKLYDKLERDMQETWAIHGVY 300 Query: 350 FDPVWSPQGDLIAF------------------------------------TKFSGEKFAI 373 W+P + + F ++F + Sbjct: 301 PTIAWTPDNEELVFWAGGTLHKLNVDDKSVSDIAFKVDTTKKIQKAVRFTQNIDTDEFDV 360 Query: 374 GV-----MKKDG------------------SQERLLVEDSNLQ--APTWSPSGRSLIFSR 408 + + DG + + L + ++ P +S G++++++ Sbjct: 361 KMLRNVQISPDGETALFEALGYIYKRDLESGKIKRLTKQTDHYELFPQYSRDGKNIVYTT 420 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D + G+ +GR +T+ P +P + Sbjct: 421 WDDNEQGTVRVVSARSGRGDTITQEPGKYVEPTFSP 456 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 96/296 (32%), Gaps = 44/296 (14%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + DR+ +I + S P SP+ +K+AY DD +Y Sbjct: 213 HYSKDSVAGIYKIKRYDRETGDIETII-SGMGGAIRPTPSPDGKKLAYIKRDDFQT-SLY 270 Query: 241 LMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALISV----------QKDE 280 L D K + ++ + + + K Sbjct: 271 LYDLTSGEHTKLYDKLERDMQETWAIHGVYPTIAWTPDNEELVFWAGGTLHKLNVDDKSV 330 Query: 281 AMDIYSVDLQSNATERLTNTLFINISAS---------YSPDSSQIVFESDREGKEQLYVM 331 + + VD + + T I+ SPD +FE+ +Y Sbjct: 331 SDIAFKVDTTKKIQKAVRFTQNIDTDEFDVKMLRNVQISPDGETALFEA----LGYIYKR 386 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKK-DGSQERLLVED 389 KR+++ + P +S G I +T + E+ + V+ G + + E Sbjct: 387 DLESGKIKRLTKQTDHYELFPQYSRDGKNIVYTTWDDNEQGTVRVVSARSGRGDTITQEP 446 Query: 390 SNLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGRNETLINTPAYAS 438 PT+SP G+++++ + G +YS+ G LI+ Y Sbjct: 447 GKYVEPTFSPDGKTVVYRKASGGSILNPKWSLHPGVYSVSAKGGKSELISKSGYQP 502 Score = 83.1 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 20/201 (9%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + E + +Y D + + L P++S +GK + + Sbjct: 368 ISPDGETALF-----EALGYIYKRDLESGKIKRLTKQTDHYELFPQYSRDGKNIVYTTWD 422 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D E + V +S + +T + ++SPD +V+ G + Sbjct: 423 DNEQGTVRVVSARSGRGDTITQEPGKYVEPTFSPDGKTVVYRKASGGSILNPKWSLHPGV 482 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + + G + IS+ F D + + + V+ + + R L E Sbjct: 483 YSVSAKGGKSELISKSGYQPQFGSA----NDRVYIMSPWPKP-TLSVVALESKKVRKLYE 537 Query: 389 DSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 538 SEHATEFRVSPDGEYLAFAER 558 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSL 404 + ++ + SP G+ + F I M G + + D Q P +SP G+ + Sbjct: 48 QGTWMNVDISPDGETLVFDLLGD----IYTMPMSGGKATKITSDIAWQMQPRFSPDGKHI 103 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 F+ + G G ++ +D+NG N+T + + + P W Sbjct: 104 AFTSDQGG--GDNIWIMDVNGENQTAVTDETFRLLNSPAWSP 143 >gi|262193783|ref|YP_003264992.1| amidohydrolase [Haliangium ochraceum DSM 14365] gi|262077130|gb|ACY13099.1| amidohydrolase [Haliangium ochraceum DSM 14365] Length = 1138 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 25/210 (11%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I ++ S +GK + D D+Y++ + + LT+ + ++ YSPD Sbjct: 83 IDTDEGTWMSLDLSPDGKEIVF----DMLGDLYTLPIAGGEAKPLTSGIAWDMQPRYSPD 138 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FTKFSG 368 I F SDR G + L+++ G + +++S + P W+P G + FT Sbjct: 139 GRFIAFTSDRGGGDNLWIIDRQGENPRQVSSENFRLVNSPAWTPDGQFLVGRKHFTSRRS 198 Query: 369 -EKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTG 415 + + G Q L E N Q P +SP GR L FS+ + D Sbjct: 199 LGAGEMWLYHIAGGQGVQLTEKQNEQKDTGEPVFSPDGRYLYFSQDSTPGPVFEYNKDPH 258 Query: 416 SKLYSI----DLNGRNETLINTPAYASDPQ 441 + +YSI G ETLI+ P A P Sbjct: 259 AGIYSIYRLDREEGHLETLISGPGGAVRPT 288 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 30/234 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++ + D L + K + + + + PR+S +G+ + + Sbjct: 96 SPDGKEIVFDMLGDLYTLPI------AGGEAKPLTSGIAWDMQPRYSPDGRFIAFTSDRG 149 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +++ +D Q ++++ F + S +++PD +V F S R G ++++ Sbjct: 150 GGDNLWIIDRQGENPRQVSSENFRLVNSPAWTPDGQFLVGRKHFTSRRSLGAGEMWLYHI 209 Query: 334 NGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMKK 378 G +++ Q+++ +PV+SP G + F++ S ++I + + Sbjct: 210 AGGQGVQLTEKQNEQKDTGEPVFSPDGRYLYFSQDSTPGPVFEYNKDPHAGIYSIYRLDR 269 Query: 379 D-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + G E L+ PT SP G + + R+ DT L+ DL + + Sbjct: 270 EEGHLETLISGPGGAVRPTPSPDGTRMAYVRRIGLDTA--LFVYDLASGEQRPV 321 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 99/272 (36%), Gaps = 36/272 (13%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 ++G + S L + + L + G + LT S +PR+SP+ + +A Sbjct: 85 TDEGTWMSLDLSPDGKEIVFDMLGDLYTLPIAGGEAKPLT-SGIAWDMQPRYSPDGRFIA 143 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAM 282 + + D ++++D + + + ++ +P ++ +G+ + + ++ A Sbjct: 144 FTS-DRGGGDNLWIIDRQGENPRQVSSENFRLVNSPAWTPDGQFLVGRKHFTSRRSLGAG 202 Query: 283 DIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDRE-------------GKE 326 +++ + +LT N +SPD + F D G Sbjct: 203 EMWLYHIAGGQGVQLTEKQNEQKDTGEPVFSPDGRYLYFSQDSTPGPVFEYNKDPHAGIY 262 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +Y + + + P SP G +A+ + G A+ V ++R + Sbjct: 263 SIYRLDREEGHLETLIS-GPGGAVRPTPSPDGTRMAYVRRIGLDTALFVYDLASGEQRPV 321 Query: 387 VEDSNLQA----------PT--WSPSGRSLIF 406 V + PT W+P RS++F Sbjct: 322 VVGLDRDMQETWAIHGVYPTMAWTPDNRSIVF 353 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 28/213 (13%) Query: 173 FNSRILFVSESVVSGIIKNSLC---VMDRDGAN------IRYLTPSRDQILFEPRFSPNQ 223 F++R+L + G + D AN R LT D F P FS + Sbjct: 401 FHTRMLRSVQVAPDGSAAVYQALGHIYLVDLANGQPKGAPRRLTRDDDVFEFYPSFSRDG 460 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI--------- 274 + + Y + DE + V ++ R R + + + + P S +GK + Sbjct: 461 RSIVYVAWSDERLGSVRMIARRGGR-SRTLTSQPGHYVEPVLSPDGKHLVYRKVGASSVR 519 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----KEQLYV 330 + +Y++ L ER++ + S + D ++ F G K QL Sbjct: 520 AQSYTHDTGLYALSLAGGEPERISRSGN---SPHFGGDGKRVFFLDTEGGGSAQKFQLES 576 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + +G D++ + + + SP G +AF Sbjct: 577 VGIDGKDERV--HLRSDAALEYAVSPDGRWVAF 607 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 95/271 (35%), Gaps = 49/271 (18%) Query: 218 RFSPNQQKVAYATYDDEDILRV--------------YLMDTRIDRAPKRIG-------NF 256 ++P+ + + + + + ++ DTR R Sbjct: 343 AWTPDNRSIVFWAGGKIQRVSIGAKAGEDRVSEIPFHVKDTRTVSKALRSPIEVAPERFH 402 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT----ERLTNTLFI-NISASYSP 311 M+ + + + +G A+ IY VDL + RLT + S+S Sbjct: 403 TRMLRSVQVAPDGSAAVYQA----LGHIYLVDLANGQPKGAPRRLTRDDDVFEFYPSFSR 458 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D IV+ + + + M + + R + Y +PV SP G + + K Sbjct: 459 DGRSIVYVAWSDERLGSVRMIARRGGRSRTLTSQPGHYVEPVLSPDGKHLVYRKVGASSV 518 Query: 372 A---------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS--KLYS 420 + + G + + N +P + G+ + F + G + +L S Sbjct: 519 RAQSYTHDTGLYALSLAGGEPERISRSGN--SPHFGGDGKRVFFLDTEGGGSAQKFQLES 576 Query: 421 IDLNGRNETL-INTPAY-----ASDPQWVGF 445 + ++G++E + + + A + D +WV F Sbjct: 577 VGIDGKDERVHLRSDAALEYAVSPDGRWVAF 607 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 112/325 (34%), Gaps = 58/325 (17%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++ + S+ +DR+ ++ L + P SP+ ++AY Sbjct: 245 STPGPVFEYNKDPHAGIYSIYRLDREEGHLETLISGPGGAV-RPTPSPDGTRMAYVRRIG 303 Query: 234 EDILRVYLMDTRIDRAPKRIGNFR---------SMILAPRFSSNGKRALISVQKDEAMDI 284 D ++ P +G R + ++ + + + + Sbjct: 304 LDTALFVYDLASGEQRPVVVGLDRDMQETWAIHGVYPTMAWTPDNRSIVFWA--GGKIQR 361 Query: 285 YSVDLQSNATER----------LTNTLF----INISAS-----------YSPDSSQIVFE 319 S+ ++ T + I ++ +PD S V++ Sbjct: 362 VSIGAKAGEDRVSEIPFHVKDTRTVSKALRSPIEVAPERFHTRMLRSVQVAPDGSAAVYQ 421 Query: 320 SDREGKEQLYVMQSNGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIG 374 + +Y++ +R+++D + F P +S G I + +S E+ ++ Sbjct: 422 A----LGHIYLVDLANGQPKGAPRRLTRDDDVFEFYPSFSRDGRSIVYVAWSDERLGSVR 477 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF-------SRKKDGDTGSKLYSIDLNGR 426 ++ + G + R L + P SP G+ L++ R + + LY++ L G Sbjct: 478 MIARRGGRSRTLTSQPGHYVEPVLSPDGKHLVYRKVGASSVRAQSYTHDTGLYALSLAGG 537 Query: 427 NETLI----NTPAYASDPQWVGFMD 447 I N+P + D + V F+D Sbjct: 538 EPERISRSGNSPHFGGDGKRVFFLD 562 >gi|320107458|ref|YP_004183048.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319925979|gb|ADV83054.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 679 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 98/252 (38%), Gaps = 31/252 (12%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--------MILAPRFSSNG 269 +SP+ +++A+A+ ++++ T +P+R+ N + +PR+S + Sbjct: 104 AWSPDSKQIAFASQG-----SIWVVST-SGGSPRRLTNSPAGGGDPRQAADRSPRWSPDA 157 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EGK 325 L + + V T LT +SPD S IV+ S + G+ Sbjct: 158 HWILFQSGRRGINSLLVVSADGATTSFLTGPHDEAGDGRWSPDGSSIVYVSRKKEYFSGR 217 Query: 326 EQLYVMQSNGSDQKR---------ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + + ++ + + S +WSP G +A + I ++ Sbjct: 218 LNVLKLDAHSGLPAGEPTVLYTAPVDRGGGWSIRGAIWSPDGKTLATVLQNSGWNHIYLI 277 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI---N 432 G Q + + + + P +SP G+SL F + + L++I NG + + + Sbjct: 278 PAAGGQPKQITDGKFEDEDPAYSPDGKSLAFLSNRGLLEATNLWTIPANGGDAQQVVKFD 337 Query: 433 TPAYASDPQWVG 444 P +S PQW Sbjct: 338 VPGISSQPQWSP 349 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 28/242 (11%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 NSL V+ DGA +LT D+ + R+SP+ + Y + E + + Sbjct: 170 NSLLVVSADGATTSFLTGPHDE-AGDGRWSPDGSSIVYVSRKKEYFSGRLNVLKLDAHSG 228 Query: 251 KRIGNFRSMILAPR------------FSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 G + AP +S +GK +Q IY + +++T Sbjct: 229 LPAGEPTVLYTAPVDRGGGWSIRGAIWSPDGKTLATVLQNSGWNHIYLIPAAGGQPKQIT 288 Query: 299 NTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWS 355 + F + +YSPD + F S+R L+ + +NG D ++ + D P WS Sbjct: 289 DGKFEDEDPAYSPDGKSLAFLSNRGLLEATNLWTIPANGGDAQQVVKFDVPGISSQPQWS 348 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQ--ERLLVEDSN---------LQAPTW-SPSGRS 403 P I F S ++ + ++++ GSQ + L + + TW S G+ Sbjct: 349 PDSSSIYFHHQSPQETSDLLVQQIGSQSAPKYLTHTTPKNFSAATQIPERVTWKSKDGKE 408 Query: 404 LI 405 ++ Sbjct: 409 IV 410 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 93/267 (34%), Gaps = 29/267 (10%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS-------RDQILFEPR 218 +T G + ++ + S+ V+ G + R LT S R PR Sbjct: 93 LTSSLGGKSGLAWSPDSKQIAFASQGSIWVVSTSGGSPRRLTNSPAGGGDPRQAADRSPR 152 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ + + + + L+ + + R+S +G + +K Sbjct: 153 WSPDAHWILFQS--GRRGINSLLVVSADGATTSFLTGPHDEAGDGRWSPDGSSIVYVSRK 210 Query: 279 ----DEAMDIYSVDLQSN----ATERLTNTL------FINISASYSPDSSQIVFESDREG 324 +++ +D S L + A +SPD + G Sbjct: 211 KEYFSGRLNVLKLDAHSGLPAGEPTVLYTAPVDRGGGWSIRGAIWSPDGKTLATVLQNSG 270 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQ 382 +Y++ + G K+I+ D + DP +SP G +AF G E + + +G Sbjct: 271 WNHIYLIPAAGGQPKQIT-DGKFEDEDPAYSPDGKSLAFLSNRGLLEATNLWTIPANGGD 329 Query: 383 ERLLVE---DSNLQAPTWSPSGRSLIF 406 + +V+ P WSP S+ F Sbjct: 330 AQQVVKFDVPGISSQPQWSPDSSSIYF 356 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 29/202 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK ++ I + + LT++L ++SPDS QI F S Sbjct: 64 ALSPDGKTVALTRSG----QIVLLPAEGGWPIPLTSSLGGKSGLAWSPDSKQIAFASQGS 119 Query: 324 GKEQLYVMQSNGSDQKRISQ-------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 ++V+ ++G +R++ ++A+ P WSP I F ++ V+ Sbjct: 120 ----IWVVSTSGGSPRRLTNSPAGGGDPRQAADRSPRWSPDAHWILFQSGRRGINSLLVV 175 Query: 377 KKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLN-------GRNE 428 DG+ L + WSP G S+++ +K +L + L+ G Sbjct: 176 SADGATTSFLTGPHDEAGDGRWSPDGSSIVYVSRKKEYFSGRLNVLKLDAHSGLPAGEPT 235 Query: 429 TLINTP-----AYASDPQ-WVG 444 L P ++ W Sbjct: 236 VLYTAPVDRGGGWSIRGAIWSP 257 >gi|32699925|sp|Q8UEU8|Y1656_AGRT5 RecName: Full=Uncharacterized protein Atu1656 Length = 293 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 15/203 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ A + + +YL+ + N S +S +GK + Sbjct: 90 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG--WSPDGKSFTYCGIR 147 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D+ DIYS+D+ S RLT+ N YSPD I F S R G+ Q++ ++ +GS Sbjct: 148 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 207 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE-- 388 +RI+ +F P SP GD + F + + F + +M DG L + Sbjct: 208 ERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF 266 Query: 389 --DSNLQAPTWSPSGRSLIFSRK 409 + +P WSP G + R Sbjct: 267 GGQGTMNSPNWSPDGDEFAYVRY 289 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K+++ ++ G R +T ++ + +SP+ + Y D + +Y MD Sbjct: 106 GKSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGV 162 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 R+ + P +S +G+ + + M I+ V + ++ ER+T++ + + Sbjct: 163 ET-RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH 221 Query: 309 YSPDSSQIVFESD--------REGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQG 358 SP ++VF S R+ ++ +M +G + + + + + P WSP G Sbjct: 222 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 281 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 282 DEFAYVRY 289 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 16/206 (7%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN-ATER 296 + + + R + + + + AP +S +GK L+ + +Y + L + + E+ Sbjct: 21 SIEIFNIRTRKM-RVVWQTPELFEAPNWSPDGKYLLL----NSEGLLYRLSLAGDPSPEK 75 Query: 297 LTNTLFI--NISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + N SPD + SD GK +Y++ S G + ++++ + + Sbjct: 76 VDTGFATICNNDHGISPDGALYA-ISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHG- 133 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 WSP G + + F I M D E L P +SP GR + F+ + Sbjct: 134 -WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT 192 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYA 437 G +++ + ++G + I AY Sbjct: 193 GQM--QIWRVRVDGSSVERITDSAYG 216 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL----CVMDRDGANIRYLTP--SR 210 I+D Y +++FVS L +MD DG N+ L Sbjct: 209 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG 268 Query: 211 DQILFEPRFSPNQQKVAYATY 231 + P +SP+ + AY Y Sbjct: 269 QGTMNSPNWSPDGDEFAYVRY 289 >gi|126664003|ref|ZP_01734997.1| WD40-like beta Propeller [Flavobacteria bacterium BAL38] gi|126623952|gb|EAZ94646.1| WD40-like beta Propeller [Flavobacteria bacterium BAL38] Length = 518 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 104/295 (35%), Gaps = 55/295 (18%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL---RVYLMDTRIDRAPKR----IG 254 NI+ LT D F+P+ K+ + + +++++D + ++ + Sbjct: 32 NIKQLTFGGDNAEAY--FNPSGDKLTLQVTNKAFGVSCDQIFMLDLKAQEFNEKSLQLVS 89 Query: 255 NFRSMILAPRFSSNGKRALISVQK---------------------DEAMDIYSVDLQSNA 293 + + +GK L + DIY DL N Sbjct: 90 TGKGRTTCSYYMPDGKHILYASTHASDHACPAPPKPIEGKYLWAIYPEFDIYIADLNGNI 149 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 T++LTNT + A SPD +I F S R G ++Y M +G++ K+I+ Sbjct: 150 TKQLTNTPGYDAEAVVSPDGKKIAFTSIRSGDLEIYTMDIDGTNLKQITY-GLGYDGGCF 208 Query: 354 WSPQGDLIAFTKFSGE--------------------KFAIGVMKKDGSQERLLVEDSN-L 392 +S I F + + I DGS + + Sbjct: 209 FSHDSKKIVFRSSRPKTAEEVKDYKDLLAQNLVAPSEMEIYTCNIDGSDLKQITHLGKAN 268 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLINTPA-YASDPQWVG 444 AP + PS + +IFS G +L+ ID+ G N I + + + P + Sbjct: 269 WAPYFHPSDKKIIFSSNHHSTRGYDFQLFMIDITGENLQQITWESEFNAFPMFSP 323 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 34/254 (13%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE--PRFSPNQQKVAYATYDDEDILRVYL 241 V +G + + DG +I Y + P+ P + K +A Y +Y+ Sbjct: 88 VSTGKGRTTCSYYMPDGKHILYASTHASDHACPAPPK--PIEGKYLWAIY---PEFDIYI 142 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D K++ N S +GK+ + + ++IY++D+ +++T L Sbjct: 143 ADLN-GNITKQLTNTPGYDAEAVVSPDGKKIAFTSIRSGDLEIYTMDIDGTNLKQITYGL 201 Query: 302 FINISASYSPDSSQIVFESDREGK--------------------EQLYVMQSNGSDQKRI 341 + +S DS +IVF S R ++Y +GSD K+I Sbjct: 202 GYDGGCFFSHDSKKIVFRSSRPKTAEEVKDYKDLLAQNLVAPSEMEIYTCNIDGSDLKQI 261 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKDGSQERLLV-EDSNLQAPT 396 + +A++ P + P I F+ G F + ++ G + + E P Sbjct: 262 THLGKANW-APYFHPSDKKIIFSSNHHSTRGYDFQLFMIDITGENLQQITWESEFNAFPM 320 Query: 397 WSPSGRSLIFSRKK 410 +SP G+ L+FS + Sbjct: 321 FSPDGKKLVFSSNR 334 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 41/175 (23%) Query: 292 NATERLTNTLFINISASYSPDSSQI-------VF-ESDREGKEQLYVMQSNGSD----QK 339 ++LT N A ++P ++ F S +Q++++ + Sbjct: 31 KNIKQLTFG-GDNAEAYFNPSGDKLTLQVTNKAFGVSC----DQIFMLDLKAQEFNEKSL 85 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEK---------------------FAIGVMKK 378 ++ + + P G I + F I + Sbjct: 86 QLVSTGKGRTTCSYYMPDGKHILYASTHASDHACPAPPKPIEGKYLWAIYPEFDIYIADL 145 Query: 379 DGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +G+ + L SP G+ + F+ + GD ++Y++D++G N I Sbjct: 146 NGNITKQLTNTPGYDAEAVVSPDGKKIAFTSIRSGD--LEIYTMDIDGTNLKQIT 198 Score = 43.5 bits (101), Expect = 0.081, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +I+F S + L ++D G N++ +T + F P FSP+ +K+ +++ Sbjct: 277 DKKIIFSSNHHSTRGYDFQLFMIDITGENLQQITWESEFNAF-PMFSPDGKKLVFSSNRM 335 Query: 234 EDILR 238 + R Sbjct: 336 QSKPR 340 >gi|242037461|ref|XP_002466125.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor] gi|241919979|gb|EER93123.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor] Length = 690 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 72/385 (18%), Positives = 140/385 (36%), Gaps = 53/385 (13%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P I F S GA LV + G D +E + DV +F + Sbjct: 285 TPPGIHAFTPAASPGAPGLVAVATRRPGSDYRHIE--VIDVSGGGG-ANAAYFDVTRAVA 341 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 AH + I G R S + S ++ S+ D ++ + S Sbjct: 342 PRAHHFNPFISPD-GERVGYHRCRG---SGNGDSPLLLESIKSPAPDTFSLFRIDGS--- 394 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 P FS + +++A+ + ++++++ +R+ F + K Sbjct: 395 ---FPSFSHDGKRIAFV-----GLPGLFVVNSDGSGGRRRV--FSGNAFPTTWDWKRKGV 444 Query: 273 LISV------QKDEAMDIYSVDLQSN-----ATERLTNTLFINISASYSPDSSQIVFESD 321 + + + +D+ +V L + + ++LT N S SPD +VF S Sbjct: 445 IYTSVGPDFASESTEVDVVAVSLGDDDDPKVSIKKLTVGGENNAFPSPSPDGKWVVFRSG 504 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS----GEKFAIGV 375 R G + LY+M + + I + E + D WSP G+ IAF G F I + Sbjct: 505 RSGHKNLYIMDAEDGEASGIRRLTEGPWSDTMCNWSPDGEWIAFASDRHNPGGGSFGIYM 564 Query: 376 MKKDGSQERLL---VEDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYS 420 + +G+ R + + P +SP ++L+F+ ++++ Sbjct: 565 VHPNGTGLRRVVHSTDGGRTNHPWFSPDSKTLVFTSDYAAVSAEPISNPHHYQPYGEIFT 624 Query: 421 IDLNGRNETLINTPAY-ASDPQWVG 444 ++++G + ++ P W Sbjct: 625 VNIDGSGIRRLTHNSFEDGTPSWTP 649 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 70/235 (29%), Gaps = 36/235 (15%) Query: 216 EPRFSPNQQKVAYATY-----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 P +P+ + Y + + A +R+ +P S +G Sbjct: 136 RPSLTPDGAHLVYVSTAEPAGSPRRSWAAVYSTSLASGATRRLTPRGVADFSPAVSPSGD 195 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-------SASYSPDSSQIVFESDRE 323 + D DL+++ T+ +++ DS+ D + Sbjct: 196 WTAAASPGPRGWDGEVEDLRTDIYVFRTSDGSRRTLAVPDAGWPTWADDSTVFFHRRDGD 255 Query: 324 GKEQLYVM------QSNGSDQK-----RISQDKEASYFDPVWSPQ--GDLIAFTKFSGEK 370 G +Y +G RI+ + F P SP G + T+ G Sbjct: 256 GWYGVYRAKLSFTDDDDGGVAVASVVDRITPPGIHA-FTPAASPGAPGLVAVATRRPGSD 314 Query: 371 F-AIGVMKKDGSQ---------ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + I V+ G R + ++ P SP G + + R + G Sbjct: 315 YRHIEVIDVSGGGGANAAYFDVTRAVAPRAHHFNPFISPDGERVGYHRCRGSGNG 369 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 38/195 (19%) Query: 263 PRFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P + +G + + A +YS L S AT RLT + S + SP Sbjct: 137 PSLTPDGAHLVYVSTAEPAGSPRRSWAAVYSTSLASGATRRLTPRGVADFSPAVSPSGDW 196 Query: 316 IVFES----DREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S +G + +YV +++ ++ ++ P W+ F Sbjct: 197 TAAASPGPRGWDGEVEDLRTDIYVFRTSDGSRRTLAVPDAG---WPTWADDST--VFFHR 251 Query: 367 SGEKFAIGVMKK--------DGSQE------RLLVEDSNLQAPTWSPSG--RSLIFSRKK 410 GV + DG R+ + P SP G + + ++ Sbjct: 252 RDGDGWYGVYRAKLSFTDDDDGGVAVASVVDRITPPGIHAFTPAASP-GAPGLVAVATRR 310 Query: 411 DGDTGSKLYSIDLNG 425 G + ID++G Sbjct: 311 PGSDYRHIEVIDVSG 325 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 39/185 (21%) Query: 296 RLTNTLFINISASYS-----PDSSQIVFESDREGKEQLYV--MQSNGSDQKR-------- 340 RLT+ + +N + +++ + ++F S+R G LY + + S +R Sbjct: 58 RLTDGVSVNYNGNFAPSSSSSEPPSLLFVSERNGSLNLYRTPVPLSASAARRREALEEED 117 Query: 341 --------ISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKFAIGVMK---KDGSQER 384 + D A P +P G + + S + V G+ R Sbjct: 118 DSPTLTPLLPWDPIALKDRPSLTPDGAHLVYVSTAEPAGSPRRSWAAVYSTSLASGATRR 177 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSR-------KKDGDTGSKLYSIDLNGRNETLINTPAYA 437 L +P SPSG + + D + +Y + + + P A Sbjct: 178 LTPRGVADFSPAVSPSGDWTAAASPGPRGWDGEVEDLRTDIYVFRTSDGSRRTLAVP-DA 236 Query: 438 SDPQW 442 P W Sbjct: 237 GWPTW 241 >gi|149921634|ref|ZP_01910083.1| WD40-like repeat/amidohydrolase domain protein [Plesiocystis pacifica SIR-1] gi|149817478|gb|EDM76948.1| WD40-like repeat/amidohydrolase domain protein [Plesiocystis pacifica SIR-1] Length = 1128 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 101/254 (39%), Gaps = 30/254 (11%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 RD + P + + A + D++ +V M L S +G Sbjct: 2 RDAGMEPPEWCADGD--ASVSADEDCTWKVDSPPGTPKEVTLDTSTGTWMNL--DVSPDG 57 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + + D +YS+ + + LT + ++ +SPD + F SDR G + L+ Sbjct: 58 ATIVFDLLGD----LYSLPMAGGEAKALTEGVAWDMQPRFSPDGQWLAFTSDRGGGDNLW 113 Query: 330 VMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIA----FTKFSG-EKFAIGVMKKDGSQE 383 VM ++GSD+ R ++ + P WSP G+ + FT + + + G + Sbjct: 114 VMPADGSDEPRPVTSESFRLITAPAWSPDGEYLVGRKHFTSRRSIGSGEMWLYHRSGGKG 173 Query: 384 RLL----VEDSNLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSI---DL-NGRN 427 L E + P +SP GR L FS + D ++Y+I DL GR Sbjct: 174 VQLTKKRTEQKDSGEPVFSPDGRYLYFSEDMTPGGVFEYNKDPNGQIYAIRRLDLEEGRL 233 Query: 428 ETLINTPAYASDPQ 441 E+++ P A P Sbjct: 234 ESIVGGPGGAVRPT 247 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 105/351 (29%), Gaps = 59/351 (16%) Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF--VSESVVSGIIKNSLCVMDR 198 G + PA ++ + ++ IT + L + I + + R Sbjct: 109 GDNLWVMPADGSDEPRPVTSESFRLITAPAWSPDGEYLVGRKHFTSRRSIGSGEMWLYHR 168 Query: 199 DGANIRYLTPSR--DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR---- 252 G LT R + EP FSP+ + + ++ + Y D R Sbjct: 169 SGGKGVQLTKKRTEQKDSGEPVFSPDGRYLYFSEDMTPGGVFEYNKDPNGQIYAIRRLDL 228 Query: 253 -------IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 I + P S +GK + ++ +L+S + + L ++ Sbjct: 229 EEGRLESIVGGPGGAVRPTPSPDGKYLAYVRRVRLKSVLFVRELESGKEWPVYDALDRDM 288 Query: 306 SASYS-----------PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS------ 348 +++ PD IVF S +++ + G + I E + Sbjct: 289 QETWAIHGVYPQMDWTPDGEAIVFWS----GGKIHKVGREGGEATIIDFHVEHTRTVYEA 344 Query: 349 ----------------YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 P SP G + + + V + R L Sbjct: 345 RRNAVEVAPESFDVKVLRWPQLSPDGSKVVYQALG----KLHVRDMQSGEVRRLTTQDEH 400 Query: 393 QA--PTWSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNETLINTPAYASDP 440 P+ S GR + + D GS ++ I+ + TP + +P Sbjct: 401 MEYYPSLSRDGRFVTYVSWDDEQLGSVRVVPIEGGAEGRVVTPTPGHYVEP 451 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 97/274 (35%), Gaps = 50/274 (18%) Query: 209 SRDQILFEPRFSPNQQKVAYAT-YDDEDILRV--------YLMDTRIDRAPKRIGNFRSM 259 P SP+ + +AY + +L V + + +DR + + Sbjct: 238 GGPGGAVRPTPSPDGKYLAYVRRVRLKSVLFVRELESGKEWPVYDALDRDMQETWAIHGV 297 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL------TNT------LFINISA 307 ++ +G+ + I+ V + + T T + ++ Sbjct: 298 YPQMDWTPDGEAIVFWS----GGKIHKVGREGGEATIIDFHVEHTRTVYEARRNAVEVAP 353 Query: 308 --------SY---SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + SPD S++V+++ +L+V + +R++ E + P S Sbjct: 354 ESFDVKVLRWPQLSPDGSKVVYQA----LGKLHVRDMQSGEVRRLTTQDEHMEYYPSLSR 409 Query: 357 QGDLIAFTKFSGEKF-AIGVMKKDGSQE-RLLV-EDSNLQAPTWSPSGRSLIFSRKKDGD 413 G + + + E+ ++ V+ +G E R++ + P +P ++++ R + G Sbjct: 410 DGRFVTYVSWDDEQLGSVRVVPIEGGAEGRVVTPTPGHYVEPVMAPDNSTVVYRRTRGGG 469 Query: 414 T-------GSKLYSIDLNGRNETLINTPAYASDP 440 + +Y++ + + A A+ P Sbjct: 470 LMSPRWSENTGIYAVPFDSKPARRGRRGAEAAKP 503 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 82/247 (33%), Gaps = 39/247 (15%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D +R LT + + + P S + + V Y ++DDE + V ++ + Sbjct: 381 LHVRDMQSGEVRRLTTQDEHMEYYPSLSRDGRFVTYVSWDDEQLGSVRVVPIEGGAEGRV 440 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMD---------IYSVDLQSNATERLTNT--L 301 + + P + + + + + IY+V S R Sbjct: 441 VTPTPGHYVEPVMAPDNSTVVYRRTRGGGLMSPRWSENTGIYAVPFDSKPARRGRRGAEA 500 Query: 302 FINISASYSPDSSQIVFESDR------EGKEQ----LYVMQSNGSDQKRISQDKEASYFD 351 + S S+ F +D +G L M +GS+++ K A Sbjct: 501 AKPVETRVSRGGSEPHFGADSERVFLIDGGPDDSRVLVSMALDGSERRE--HAKSARAEQ 558 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT------------WSP 399 SP G +AF E F + V + + V + P+ WS Sbjct: 559 FAVSPDGRWLAFV----EGFRVHVAAFPTTGTTVDVGPNGGGLPSAKVSEQAGWFVHWSG 614 Query: 400 SGRSLIF 406 G++L + Sbjct: 615 DGKALHW 621 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 14/108 (12%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 ++A P W GD + + + + L SP G ++ Sbjct: 2 RDAGMEPPEWCADGDASV-SADEDCTWKVDSPPGTPKEVTLDTSTGTWMNLDVSPDGATI 60 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 +F D LYS+ + G + P ++ D QW+ F Sbjct: 61 VF------DLLGDLYSLPMAGGEAKALTEGVAWDMQPRFSPDGQWLAF 102 >gi|222086206|ref|YP_002544738.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium radiobacter K84] gi|221723654|gb|ACM26810.1| periplasmic component of the Tol biopolymer transport system [Agrobacterium radiobacter K84] Length = 275 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRF--SPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 L + DG + L SP+ +A + +Y++ Sbjct: 45 LYRLALDGKAEPVQVDTSFATLCNNDHGISPDGSLIAISDKTQHGKSCIYVLPAEGGTPR 104 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + N S +S +GKR ++ DIY++ + RLT++ N YS Sbjct: 105 QVTTNLPSYWHG--WSPDGKRFSYCGIRNNVFDIYTISVDGGEETRLTHSEGRNDGPDYS 162 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 D I F S R G Q++ + +G+ ++++ D ++F SP+ D + + + Sbjct: 163 ADGQWIYFNSSRTGLMQIWRIHPDGTGLQQVTSDNYGNWFA-HPSPRNDKVLLISYDPDV 221 Query: 371 F--------AIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKK 410 F + +M DG L E ++ P WSP G + R + Sbjct: 222 FDHPRDLNVRMRLMDMDGGNLTTLFELFGGQGSINVPNWSPDGDEFAYVRYE 273 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 18/211 (8%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + +Y + T + + + ++I AP FS +G+ L+ + +Y + L Sbjct: 1 MRSSVEIYNIRTGEN---RIVWQTETLIEAPNFSPDGRYLLL----NGDGLLYRLALDGK 53 Query: 293 -ATERLTNTLFI--NISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEA 347 ++ + N SPD S I SD+ GK +YV+ + G ++++ + + Sbjct: 54 AEPVQVDTSFATLCNNDHGISPDGSLIA-ISDKTQHGKSCIYVLPAEGGTPRQVTTNLPS 112 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF 406 + WSP G ++ F I + DG +E L P +S G+ + F Sbjct: 113 YWHG--WSPDGKRFSYCGIRNNVFDIYTISVDGGEETRLTHSEGRNDGPDYSADGQWIYF 170 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 + + G +++ I +G + + Y Sbjct: 171 NSSRTGLM--QIWRIHPDGTGLQQVTSDNYG 199 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 89/219 (40%), Gaps = 14/219 (6%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D + ++ + ++ S + K+ + V+ +G R +T + + + Sbjct: 60 DTSFATLCNNDHGISPDGSLIAISDKTQHGKSCIYVLPAEGGTPRQVTT--NLPSYWHGW 117 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++ +Y + ++ +Y + R+ + P +S++G+ + + Sbjct: 118 SPDGKRFSYCGIRN-NVFDIYTISVD-GGEETRLTHSEGRNDGPDYSADGQWIYFNSSRT 175 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI--------VFESDREGKEQLYVM 331 M I+ + +++T+ + N A SP + ++ VF+ R+ ++ +M Sbjct: 176 GLMQIWRIHPDGTGLQQVTSDNYGNWFAHPSPRNDKVLLISYDPDVFDHPRDLNVRMRLM 235 Query: 332 QSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSG 368 +G + + + S P WSP GD A+ ++ Sbjct: 236 DMDGGNLTTLFELFGGQGSINVPNWSPDGDEFAYVRYEP 274 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 16/170 (9%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++++ + T + + ++SPD ++ G LY + +G + Sbjct: 7 IYNIRTGENRIVWQTETLIEAPNFSPDGRYLLLN----GDGLLYRLALDGKAEPVQVDTS 62 Query: 346 EASY--FDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 A+ D SP G LIA + K K I V+ +G R + + WSP G+ Sbjct: 63 FATLCNNDHGISPDGSLIAISDKTQHGKSCIYVLPAEGGTPRQVTTNLPSYWHGWSPDGK 122 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + ++ +Y+I ++G ET + P Y++D QW+ F Sbjct: 123 RFSYCGIRNN--VFDIYTISVDGGEETRLTHSEGRNDGPDYSADGQWIYF 170 >gi|262194812|ref|YP_003266021.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] gi|262078159|gb|ACY14128.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] Length = 969 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 99/274 (36%), Gaps = 19/274 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L +D R + D +P +SP ++AY + R + Sbjct: 547 PNSRSPGELWTIDLASGRRRRV---ADADATQPAWSPGGHRIAYWGLPEGGSQRDIWTVS 603 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS------NATERLT 298 P + + + P +S +G+ + + + +++ V + A E +T Sbjct: 604 AEGGPPVAVTDDGDLDWNPVWSPDGRYLYFASDRGGSTNMWRVAIDERTGERRGAPEPVT 663 Query: 299 NTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEAS--YFDPVW 354 +S D +V+ R +++ G+ + S P Sbjct: 664 TPSAYAAHLRFSSDGKHMVYADIRSASNLQRIAFDPDAGAVVGAPTWVTGGSLDLNAPDV 723 Query: 355 SPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 SP G+ +A T + + VM+ DGS+ R L +D N + P W+P G + F + G Sbjct: 724 SPDGEWLAMTVTDEANREDLLVMRVDGSERRRLTDDVYNDRTPRWAPDGSRIAFYSDRSG 783 Query: 413 DTGSKLYSIDLNGRNETLI--NTPAYASDPQWVG 444 +L+++D +G + T P W Sbjct: 784 K--YELWAVDPHGNRLEQLTFTTGDSVYYPVWSP 815 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 12/286 (4%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN--IRYLTPSRDQILFEPRFSPNQQK 225 + R L+ + + + +R G + RFS + + Sbjct: 621 NPVWSPDGRYLYFASDRGGSTNMWRVAIDERTGERRGAPEPVTTPSAYAAHLRFSSDGKH 680 Query: 226 VAYATYDDEDILRVYLMDTRID---RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + YA L+ D AP + + AP S +G+ ++V + Sbjct: 681 MVYADIRSASNLQRIAFDPDAGAVVGAPTWVTGGSLDLNAPDVSPDGEWLAMTVTDEANR 740 Query: 283 -DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 D+ + + + RLT+ ++ + + ++PD S+I F SDR GK +L+ + +G+ +++ Sbjct: 741 EDLLVMRVDGSERRRLTDDVYNDRTPRWAPDGSRIAFYSDRSGKYELWAVDPHGNRLEQL 800 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ--ERLL-VEDSNLQAPTWS 398 + S + PVWSP G + + S + I + +Q ERL VED+ +WS Sbjct: 801 TFTTGDSVYYPVWSPDGSRVLVQQRSDGSYVIDAEQPWEAQTPERLADVEDTWFTGWSWS 860 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G L + G Y+ G E L + A P W+ Sbjct: 861 SDGDRLAGAVHIGDRHGLGTYTFS-TGAYEIL--SDAEMDTPLWLA 903 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 19/249 (7%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 R P P+ + V +A D D +Y A + Sbjct: 428 RHFTQLTYRGGQEVFPSLGPDARWVIFAGRDGGD-WDIYYQRIGGSNAFNLTADSAYDDT 486 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P S +G ++ IY +++ + R+ + S+SPD + + + Sbjct: 487 EPVLSPDGAHIAFRSTREGGG-IYVMEVTGESVRRVVDEGAN---PSWSPDGRSLAYATR 542 Query: 322 REGKEQ------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAI 373 L+ + ++R++ +A P WSP G IA+ G + I Sbjct: 543 STLLPNSRSPGELWTIDLASGRRRRVA---DADATQPAWSPGGHRIAYWGLPEGGSQRDI 599 Query: 374 GVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + +G + +D + P WSP GR L F+ + G T ++ + ++ R Sbjct: 600 WTVSAEGGPPVAVTDDGDLDWNPVWSPDGRYLYFASDRGGST--NMWRVAIDERTGERRG 657 Query: 433 TPAYASDPQ 441 P + P Sbjct: 658 APEPVTTPS 666 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 14/208 (6%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI- 303 + R ++ + P + + + + + DIY + + LT Sbjct: 425 EVPRHFTQLTYRGGQEVFPSLGPDARWVIFAGRDGGDWDIYYQRIGGSNAFNLTADSAYD 484 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + SPD + I F S REG +YVM+ G +R+ + +P WSP G +A+ Sbjct: 485 DTEPVLSPDGAHIAFRSTREGG-GIYVMEVTGESVRRVVDEG----ANPSWSPDGRSLAY 539 Query: 364 TKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 S + + + R V D++ P WSP G + + +G + Sbjct: 540 ATRSTLLPNSRSPGELWTIDLASGRRRR-VADADATQPAWSPGGHRIAYWGLPEGGSQRD 598 Query: 418 LYSIDLNGRNETLINTPAY-ASDPQWVG 444 ++++ G + +P W Sbjct: 599 IWTVSAEGGPPVAVTDDGDLDWNPVWSP 626 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 101/274 (36%), Gaps = 33/274 (12%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + G+N LT EP SP+ +A+ + + +Y+M+ Sbjct: 456 GRDGGDWDIYYQRIGGSNAFNLTADSAYDDTEPVLSPDGAHIAFRSTREGGG--IYVMEV 513 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLT 298 + + + + P +S +G+ + + + ++++DL S R+ Sbjct: 514 TGESVRRVVDEGAN----PSWSPDGRSLAYATRSTLLPNSRSPGELWTIDLASGRRRRVA 569 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + ++SP +I + EG Q ++ + + G ++ D + + +PVWSP Sbjct: 570 DADA--TQPAWSPGGHRIAYWGLPEGGSQRDIWTVSAEGGPPVAVTDDGDLDW-NPVWSP 626 Query: 357 QGDLIAFTKFSGEKFAIGVMKKD-------GSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 G + F G + + D G+ E + + +S G+ ++++ Sbjct: 627 DGRYLYFASDRGGSTNMWRVAIDERTGERRGAPEPVTTPSAYAAHLRFSSDGKHMVYA-- 684 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 D + S L I + + A P WV Sbjct: 685 -DIRSASNLQRIAFD------PDAGAVVGAPTWV 711 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 54/255 (21%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 L P SP+ + +A D+ + + +M +R+ + Sbjct: 707 APTWVTGGSLDLNAPDVSPDGEWLAMTVTDEANREDLLVMRVD-GSERRRLTDDVYNDRT 765 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFESD 321 PR++ +G R + ++++VD N E+LT T ++ +SPD S+++ + Sbjct: 766 PRWAPDGSRIAFYSDRSGKYELWAVDPHGNRLEQLTFTTGDSVYYPVWSPDGSRVLVQQR 825 Query: 322 REGKEQLYVMQSN----GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 +G YV+ + +R++ ++ + WS GD +A G++ +G Sbjct: 826 SDGS---YVIDAEQPWEAQTPERLADVEDTWFTGWSWSSDGDRLAGAVHIGDRHGLGTYT 882 Query: 378 KDGSQERLLVEDSNLQAPTW---------------------------------------- 397 +L D+ + P W Sbjct: 883 FSTGAYEIL-SDAEMDTPLWLADDRRMVAVDRRDPSVLYLFDSETGERRVLYSIAPDRFG 941 Query: 398 ----SPSGRSLIFSR 408 +P GR+L ++R Sbjct: 942 RISLAPDGRTLYYAR 956 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 9/212 (4%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ++DD+Y T SRI F S+ K L +D G + LT + ++ Sbjct: 755 RLTDDVYNDRTPRWAPDGSRIAFYSDR----SGKYELWAVDPHGNRLEQLTFTTGDSVYY 810 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRALIS 275 P +SP+ +V + + + P+R+ + +SS+G R + Sbjct: 811 PVWSPDGSRVL-VQQRSDGSYVIDAEQPWEAQTPERLADVEDTWFTGWSWSSDGDRLAGA 869 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 V + + + + A E L++ + + D ++V DR LY+ S Sbjct: 870 VHIGDRHGLGTYTFSTGAYEILSD--AEMDTPLWLADDRRMVAV-DRRDPSVLYLFDSET 926 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +++ + + +P G + + + + Sbjct: 927 GERRVLYSIAPDRFGRISLAPDGRTLYYARIT 958 >gi|302039356|ref|YP_003799678.1| putative protein TolB (fragment) [Candidatus Nitrospira defluvii] gi|300607420|emb|CBK43753.1| putative Protein TolB (fragment) [Candidatus Nitrospira defluvii] Length = 377 Score = 142 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 48/267 (17%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL------------- 237 + VMD IR ++ F P ++V Y++ Sbjct: 97 YQMYVMDLGSEKIRMVSTGSGTTTCG-YFFPGDRRVLYSSTHLRGPNCPPKPKRDGGAYR 155 Query: 238 ----RVYLMDTRIDR-APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 L RID P+R+ N S NGK + + +D +DIY++DL Sbjct: 156 WALDDYDLFSVRIDGLDPQRLTNTPGYDAEATVSPNGKSIVWTSMRDGDLDIYAMDLDGT 215 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDR--------------------EGKEQLYVMQ 332 RLT + + A +SPDS +IV+ + G+ ++++M Sbjct: 216 HPRRLTQEIGYDGGAFFSPDSKRIVYRAQHPSNQEELDQYKALLAQNLVEPGRLEIFIMN 275 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-------FAIGVMKKDG-SQER 384 ++GS++++++ + AS F P + P G + F + F + ++ +DG QER Sbjct: 276 ADGSNKQQVTNNG-ASNFSPFFHPDGHRVIFASNVETRNAAGRPEFHLYLVTEDGSGQER 334 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKD 411 L + P +SP G+ L++ + Sbjct: 335 LTFDGQFNSFPMFSPDGKMLVWVSDRH 361 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 106/307 (34%), Gaps = 67/307 (21%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE----------------DILRVYLMDT 244 NIR LT R FS K+ + + ++ ++Y+MD Sbjct: 47 TNIRQLTFGRQNAEAYFSFS--GNKLIFQSTNNWMKDTFAAAMHPSDIPLGCYQMYVMDL 104 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ------------KDEAMDIYSVD---- 288 ++ + + F +R L S +D +++D Sbjct: 105 GSEK-IRMVSTGSGTTTCGYFFPGDRRVLYSSTHLRGPNCPPKPKRDGGAYRWALDDYDL 163 Query: 289 ----LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + +RLTNT + A+ SP+ IV+ S R+G +Y M +G+ +R++Q+ Sbjct: 164 FSVRIDGLDPQRLTNTPGYDAEATVSPNGKSIVWTSMRDGDLDIYAMDLDGTHPRRLTQE 223 Query: 345 KEASYFDPVWSPQGDLIAFTKFSG--------------------EKFAIGVMKKDGSQER 384 +SP I + + I +M DGS ++ Sbjct: 224 -IGYDGGAFFSPDSKRIVYRAQHPSNQEELDQYKALLAQNLVEPGRLEIFIMNADGSNKQ 282 Query: 385 LLVEDS-NLQAPTWSPSGRSLIFSRKKD-----GDTGSKLYSIDLNGRNETLINTPA-YA 437 + + + +P + P G +IF+ + G LY + +G + + + Sbjct: 283 QVTNNGASNFSPFFHPDGHRVIFASNVETRNAAGRPEFHLYLVTEDGSGQERLTFDGQFN 342 Query: 438 SDPQWVG 444 S P + Sbjct: 343 SFPMFSP 349 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 60/252 (23%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKD-----------------EAMDIYSVDLQSNAT 294 R F FS +G + + + +Y +DL S Sbjct: 50 RQLTFGRQNAEAYFSFSGNKLIFQSTNNWMKDTFAAAMHPSDIPLGCYQMYVMDLGSEKI 109 Query: 295 ERLTNTLFINISASYSPDSSQIVFESD------------REGK--------EQLYVMQSN 334 ++ + P ++++ S R+G L+ ++ + Sbjct: 110 RMVSTGSGTTTCGYFFPGDRRVLYSSTHLRGPNCPPKPKRDGGAYRWALDDYDLFSVRID 169 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQ 393 G D +R++ + + SP G I +T I M DG+ R L ++ Sbjct: 170 GLDPQRLT-NTPGYDAEATVSPNGKSIVWTSMRDGDLDIYAMDLDGTHPRRLTQEIGYDG 228 Query: 394 APTWSPSGRSLIFSRKKDGD------------------TGSKLYSIDLNGRNETLINTPA 435 +SP + +++ + + +++ ++ +G N+ + Sbjct: 229 GAFFSPDSKRIVYRAQHPSNQEELDQYKALLAQNLVEPGRLEIFIMNADGSNKQQVTNNG 288 Query: 436 YASDPQWVGFMD 447 ++ F Sbjct: 289 ASNF---SPFFH 297 Score = 36.5 bits (83), Expect = 9.4, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 24/161 (14%) Query: 77 DVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDR 136 F + +P + + +L AQ LV RL + D ++ Sbjct: 229 GAFFSPDSKRIVYRAQHPSNQEELDQYKALLAQNLV-------EPGRLEIFIMNADGSNK 281 Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 +Q+ + + H + F S V +G + L ++ Sbjct: 282 QQVTNNGASNFSPFFHPDGHRV-------------IFASN---VETRNAAGRPEFHLYLV 325 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 DG+ LT Q P FSP+ + + + + Sbjct: 326 TEDGSGQERLTFDG-QFNSFPMFSPDGKMLVWVSDRHAKEP 365 >gi|197104555|ref|YP_002129932.1| hypothetical protein PHZ_c1089 [Phenylobacterium zucineum HLK1] gi|196477975|gb|ACG77503.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 1107 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 27/228 (11%) Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 V T I + S +G+ ++ D IY + + R Sbjct: 67 WDVNNPPTVGQVRQVPINVDEGTWMDLDVSPDGRTIAFALLGD----IYVMPISGGTPTR 122 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + + +SPD +I F SDR G + ++VM ++GSD++++++++ P WSP Sbjct: 123 IAEGMAWEVQPRFSPDGKRIAFTSDRGGGDNIWVMNADGSDKRQVTKEEFRLLNQPAWSP 182 Query: 357 QGDLIA-----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRSLI 405 G IA T S + + G LV+ N Q P ++P G+S+ Sbjct: 183 DGRFIAAKKHFTTGRSLGTGEVWLYHVSGGGGVPLVKRPNEQHQKELGEPIFAPDGKSIY 242 Query: 406 FSRK--------KDGDTGSKLYSID----LNGRNETLINTPAYASDPQ 441 F+R D+ + L++I+ G T + P + P Sbjct: 243 FTRNITPGPIFEYAQDSNTDLFNIERYELATGETSTAVAGPGGSVRPT 290 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 32/256 (12%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + + + SP+ + +A+A D +Y+M P RI + Sbjct: 76 GQVRQVPINVDEGTWMDLDVSPDGRTIAFALLGD-----IYVMPI-SGGTPTRIAEGMAW 129 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV- 317 + PRFS +GKR + + +I+ ++ + ++T F ++ ++SPD I Sbjct: 130 EVQPRFSPDGKRIAFTSDRGGGDNIWVMNADGSDKRQVTKEEFRLLNQPAWSPDGRFIAA 189 Query: 318 ---FESDRE-GKEQLYVMQSNGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 F + R G ++++ +G KR ++ + +P+++P G I FT+ Sbjct: 190 KKHFTTGRSLGTGEVWLYHVSGGGGVPLVKRPNEQHQKELGEPIFAPDGKSIYFTRNITP 249 Query: 367 ----------SGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + + F I + + + PT SP G+ + F R++ T Sbjct: 250 GPIFEYAQDSNTDLFNIERYELATGETSTAVAGPGGSVRPTPSPDGKKIAFIRRE--RTQ 307 Query: 416 SKLYSIDLNGRNETLI 431 S+LY DL E + Sbjct: 308 SRLYVKDLASGVERKV 323 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 111/326 (34%), Gaps = 72/326 (22%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 RI F S+ + VM+ DG++ R +T ++L +P +SP+ + +A + T Sbjct: 141 RIAFTSDRGGGDN----IWVMNADGSDKRQVTKEEFRLLNQPAWSPDGRFIAAKKHFTTG 196 Query: 232 DDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNGKRALISV----------- 276 V+L + + + P F+ +GK + Sbjct: 197 RSLGTGEVWLYHVSGGGGVPLVKRPNEQHQKELGEPIFAPDGKSIYFTRNITPGPIFEYA 256 Query: 277 --QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + +I +L + T ++ + SPD +I F + +LYV Sbjct: 257 QDSNTDLFNIERYELATGETSTAVAGPGGSVRPTPSPDGKKIAFIRRERTQSRLYVKDLA 316 Query: 335 GSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 ++++ + Y + W+P + F ++G K I + DG+ R Sbjct: 317 SGVERKVYDDLDRDMQETWAVVGLYPNLAWTPDSKTLVF--WAGGK--IRRVDADGANAR 372 Query: 385 LLVEDSNL-----QAP-------------------TWSPSGRSLIFSRKKDGDTGSKLYS 420 ++ N +AP SP GR +++ ++ KLY Sbjct: 373 VIPFRVNDTRAVIEAPHPKVQVAPDRFATKMTRYAAVSPDGRQVVY------ESLGKLYV 426 Query: 421 IDLNGRNETLIN---TPAYASDPQWV 443 + G + A+ P W Sbjct: 427 KPMAGGAARRLTRGDDGAFELFPAWS 452 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 48/336 (14%), Positives = 109/336 (32%), Gaps = 63/336 (18%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGAN----IRYLTPSRDQILFE 216 ++ + + R + + +G + + G ++ + L E Sbjct: 172 FRLLNQPAWSPDGRFIAAKKHFTTGRSLGTGEVWLYHVSGGGGVPLVKRPNEQHQKELGE 231 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRID-----------RAPKRIGNFRSMILAPRF 265 P F+P+ + + + + Y D+ D + P Sbjct: 232 PIFAPDGKSIYFTRNITPGPIFEYAQDSNTDLFNIERYELATGETSTAVAGPGGSVRPTP 291 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDSS 314 S +GK+ ++ +Y DL S ++ + L ++ + +++PDS Sbjct: 292 SPDGKKIAFIRRERTQSRLYVKDLASGVERKVYDDLDRDMQETWAVVGLYPNLAWTPDSK 351 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY----------------------FDP 352 +VF + ++ + ++G++ + I + Sbjct: 352 TLVFWA----GGKIRRVDADGANARVIPFRVNDTRAVIEAPHPKVQVAPDRFATKMTRYA 407 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQ-APTWSPSGRSLIFSRK 409 SP G + + + V G R L +D + P WS GR++ F Sbjct: 408 AVSPDGRQVVYESLG----KLYVKPMAGGAARRLTRGDDGAFELFPAWSRDGRTIAFVSW 463 Query: 410 KDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 D G ++ ++ +G + N P + + PQ+ Sbjct: 464 TDAGLG-RIKTVAASGGTARDVTNQPGHYARPQFSP 498 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 42/244 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-------------- 263 ++P+ + + + + I RV P R+ + R++I AP Sbjct: 345 AWTPDSKTLVF--WAGGKIRRVDADGANARVIPFRVNDTRAVIEAPHPKVQVAPDRFATK 402 Query: 264 -----RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 S +G++ + +Y + A RLT + + ++S D I Sbjct: 403 MTRYAAVSPDGRQVVYES----LGKLYVKPMAGGAARRLTRGDDGAFELFPAWSRDGRTI 458 Query: 317 VFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------ 369 F S + G ++ + ++G + ++ ++ Y P +SP G I F K G Sbjct: 459 AFVSWTDAGLGRIKTVAASGGTARDVT-NQPGHYARPQFSPDGRTIVFEKGEGGFLTARA 517 Query: 370 ---KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + G + D + AP + G + + G +L S DLNG Sbjct: 518 WSENPGVYRVPASGGTPVRIARD--MGAPQFGADGERVFMVASEKGKQ--QLVSTDLNGE 573 Query: 427 NETL 430 + + Sbjct: 574 AKRV 577 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 94/289 (32%), Gaps = 46/289 (15%) Query: 193 LCVMDRDGANIRYL----------------------TPSRDQILFEPRFSPNQQKVAYAT 230 + +D DGAN R + ++ SP+ ++V Y + Sbjct: 361 IRRVDADGANARVIPFRVNDTRAVIEAPHPKVQVAPDRFATKMTRYAAVSPDGRQVVYES 420 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDL 289 L V M R R G+ + L P +S +G+ D I +V Sbjct: 421 LGK---LYVKPMAGGAARRLTR-GDDGAFELFPAWSRDGRTIAFVSWTDAGLGRIKTVAA 476 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQLYVMQSNGSDQKR 340 +TN +SPD IVFE G +Y + ++G R Sbjct: 477 SGGTARDVTNQPGHYARPQFSPDGRTIVFEKGEGGFLTARAWSENPGVYRVPASGGTPVR 536 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 I++D P + G+ + K + +G +R+ + + + SP Sbjct: 537 IARD----MGAPQFGADGERVFMVASEKGKQQLVSTDLNGEAKRVHAQGELVTDYSVSPD 592 Query: 401 GRSLIFSRKKDGD-----TGSKLYSIDLNGRNETLI-NTPAYASDPQWV 443 G F + + G + ++DL G + + A+ W Sbjct: 593 GALFAFRQNYEAHVMPLMPGGQEVAVDLKGGPMPVTRVSHGGATWIHWS 641 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 85/308 (27%), Gaps = 81/308 (26%) Query: 142 KKFFSSPASWRKIAHTISD------DIYQSITGEKGDFNSRILFVSESVVSGII-----K 190 ++ + A+ R I ++D + + F +++ + G Sbjct: 362 RRVDADGANARVIPFRVNDTRAVIEAPHPKVQVAPDRFATKMTRYAAVSPDGRQVVYESL 421 Query: 191 NSLCVMDRDGANIRYLTPSRDQ-ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L V G R LT D P +S + + +A+ ++ D + R+ + Sbjct: 422 GKLYVKPMAGGAARRLTRGDDGAFELFPAWSRDGRTIAFVSWTDAGLGRIKTVA-ASGGT 480 Query: 250 PKRIGNFRSMILAPRFSSNGKRALI---------SVQKDEAMDIYSVDLQSNATERLTNT 300 + + N P+FS +G+ + + E +Y V R+ Sbjct: 481 ARDVTNQPGHYARPQFSPDGRTIVFEKGEGGFLTARAWSENPGVYRVPASGGTPVRIARD 540 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNG------------------------- 335 + + + D ++ + +GK+QL NG Sbjct: 541 MG---APQFGADGERVFMVASEKGKQQLVSTDLNGEAKRVHAQGELVTDYSVSPDGALFA 597 Query: 336 ------------------------SDQKRISQDKEASYFDPVWSPQGDLI-------AFT 364 +++ WS G + +T Sbjct: 598 FRQNYEAHVMPLMPGGQEVAVDLKGGPMPVTRVSHGGATWIHWSDGGRRLHWSAGPTVYT 657 Query: 365 KFSGEKFA 372 SG F Sbjct: 658 AESGSFFR 665 >gi|30248906|ref|NP_840976.1| periplasmic component of the Tol biopolymer transport system [Nitrosomonas europaea ATCC 19718] gi|30138523|emb|CAD84813.1| Periplasmic component of the Tol biopolymer transport system [Nitrosomonas europaea ATCC 19718] Length = 369 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 25/200 (12%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ- 327 G+R + DE DIY D LT+T + AS+SPD I F S+R + Sbjct: 135 GQRRSYAWDYDEFYDIYETDFAGGNIRNLTHTKGYDAEASWSPDGRLIAFASNRRAYSEP 194 Query: 328 ------------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-- 367 +Y+M ++GS+ KR++ + P +SP G I + +FS Sbjct: 195 LSEAETVLFSNDPSSMIDIYIMDADGSNVKRLTH-TNSYDGGPFFSPDGKRIVWRRFSEN 253 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 G++ I M DGS ++ + + + AP + PS + +IF+ G +LY +D++G+ Sbjct: 254 GQEAEIFTMNTDGSDQKQITRLNKMSWAPFYHPSNQYIIFATNVHGHRNFELYIVDIDGK 313 Query: 427 NE--TLINTPAYASDPQWVG 444 E + + + P + Sbjct: 314 KEPVRVTDEEGFDGLPVFTP 333 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 28/223 (12%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--- 278 + Q+ +YA +D ++ +Y D + + + + +S +G+ + + Sbjct: 134 SGQRRSYA-WDYDEFYDIYETD-FAGGNIRNLTHTKGYDAEASWSPDGRLIAFASNRRAY 191 Query: 279 ----------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--S 320 +DIY +D + +RLT+T + +SPD +IV+ S Sbjct: 192 SEPLSEAETVLFSNDPSSMIDIYIMDADGSNVKRLTHTNSYDGGPFFSPDGKRIVWRRFS 251 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKK 378 + + +++ M ++GSDQK+I++ + S+ P + P I F F + ++ Sbjct: 252 ENGQEAEIFTMNTDGSDQKQITRLNKMSW-APFYHPSNQYIIFATNVHGHRNFELYIVDI 310 Query: 379 DGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 DG +E R+ E+ P ++P G+ + ++ + D +L+ Sbjct: 311 DGKKEPVRVTDEEGFDGLPVFTPDGQYITWTSDRTPDHKGRLF 353 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 33/243 (13%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK---------NSLCVMDRDGANIRYL 206 H I + + S T E + +++ E SG + + D G NIR L Sbjct: 104 HPIQEKVLFSSTHEDPEAKAKMTTEIEQRKSGQRRSYAWDYDEFYDIYETDFAGGNIRNL 163 Query: 207 TPSRDQILFEPRFSPNQQKVAYATY------------------DDEDILRVYLMDTRIDR 248 T ++ E +SP+ + +A+A+ D ++ +Y+MD Sbjct: 164 THTK-GYDAEASWSPDGRLIAFASNRRAYSEPLSEAETVLFSNDPSSMIDIYIMDAD-GS 221 Query: 249 APKRIGNFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 KR+ + S P FS +GKR + + + +I++++ + +++T ++ + Sbjct: 222 NVKRLTHTNSYDGGPFFSPDGKRIVWRRFSENGQEAEIFTMNTDGSDQKQITRLNKMSWA 281 Query: 307 ASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 Y P + I+F ++ G +LY++ +G + D+E PV++P G I +T Sbjct: 282 PFYHPSNQYIIFATNVHGHRNFELYIVDIDGKKEPVRVTDEEGFDGLPVFTPDGQYITWT 341 Query: 365 KFS 367 Sbjct: 342 SDR 344 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 10/183 (5%) Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + + ASW I+ + E +LF + +MD DG+N++ Sbjct: 169 YDAEASWSPDGRLIAFASNRRAYSEPLSEAETVLF----SNDPSSMIDIYIMDADGSNVK 224 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 LT + P FSP+ +++ + + ++ ++ M+T K+I M AP Sbjct: 225 RLTHTNS-YDGGPFFSPDGKRIVWRRFSENGQEAEIFTMNTD-GSDQKQITRLNKMSWAP 282 Query: 264 RFSSNGKRALISVQKDE--AMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFES 320 + + + + + ++Y VD+ R+T+ + ++PD I + S Sbjct: 283 FYHPSNQYIIFATNVHGHRNFELYIVDIDGKKEPVRVTDEEGFDGLPVFTPDGQYITWTS 342 Query: 321 DRE 323 DR Sbjct: 343 DRT 345 Score = 38.8 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 + + V G L ++D DG + P F+P+ Q + + + D Sbjct: 290 YIIFATNVHGHRNFELYIVDIDGKKEPVRVTDEEGFDGLPVFTPDGQYITWTSDRTPD 347 >gi|86133597|ref|ZP_01052179.1| WD40-like repeat/amidohydrolase domain protein [Polaribacter sp. MED152] gi|85820460|gb|EAQ41607.1| WD40-like repeat/amidohydrolase domain protein [Polaribacter sp. MED152] Length = 1127 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 21/207 (10%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 L+ S +G+ + S+ D +Y++ R+T+ L ++ +YSPD Sbjct: 49 TTEGTWLSLDISPDGETIIFSMLGD----LYTIPFSGGKATRITDGLALDTKPNYSPDGK 104 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 I F SDR G + ++++ + +++++DK + WSP G+ I + Sbjct: 105 SIAFASDRSGNDNVWILNLETKETRQVTKDKRGAVESVAWSPDGEYIV-AAKGKRNLKLH 163 Query: 375 VMKKD-GSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDG-DTGSKL--YSIDL----N 424 + KD GS +L+ E ++L+ P +SP + + +S + G + ++L Y I Sbjct: 164 LYHKDAGSGTQLIKEPASLKTVEPVFSPDNKYIYYSSRTGGWNYNAQLPQYQISRYDLET 223 Query: 425 GRNETLIN------TPAYASDPQWVGF 445 G++ + + TP +SD +++ + Sbjct: 224 GKSTRVTSRYGSAFTPTLSSDGKYMVY 250 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 84/211 (39%), Gaps = 18/211 (8%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + ++ D+ + RI + ++ P +S +GK + + Sbjct: 59 ISPDGETIIFSML--GDLYTIPF----SGGKATRITDGLALDTKPNYSPDGKSIAFASDR 112 Query: 279 DEAMDIYSVDLQSNATERLTNT-LFINISASYSPDSSQIVFESD-REGKEQLYVMQSNGS 336 +++ ++L++ T ++T S ++SPD IV R K LY + GS Sbjct: 113 SGNDNVWILNLETKETRQVTKDKRGAVESVAWSPDGEYIVAAKGKRNLKLHLYHKDA-GS 171 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKKDGSQERLLVE 388 + I + +PV+SP I ++ +G ++ I + + + Sbjct: 172 GTQLIKEPASLKTVEPVFSPDNKYIYYSSRTGGWNYNAQLPQYQISRYDLETGKSTRVTS 231 Query: 389 D-SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + PT S G+ +++ + + TG L Sbjct: 232 RYGSAFTPTLSSDGKYMVYGSRYEEKTGLVL 262 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 98/290 (33%), Gaps = 32/290 (11%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + S + + + L + G +T + +P +SP+ + +A+A Sbjct: 51 EGTWLSLDISPDGETIIFSMLGDLYTIPFSGGKATRITDGL-ALDTKPNYSPDGKSIAFA 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + D V++++ + + R + + +S +G+ + + + + ++ Sbjct: 110 S-DRSGNDNVWILNLETKETRQVTKDKRGAVESVAWSPDGEYIV-AAKGKRNLKLHLYHK 167 Query: 290 QSNATERLTNTLFI--NISASYSPDSSQIVFESDREGKE--------QLYVMQSNGSDQK 339 + + +L + +SPD+ I + S G Q+ Sbjct: 168 DAGSGTQLIKEPASLKTVEPVFSPDNKYIYYSSRTGGWNYNAQLPQYQISRYDLETGKST 227 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED---------- 389 R++ + S F P S G + + EK + + E L Sbjct: 228 RVTS-RYGSAFTPTLSSDGKYMVYGSRYEEKTGLVLRDLISGDENWLAYPVQRDEQESVA 286 Query: 390 --SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 L A ++P+ + ++ G K+Y I ++G I Sbjct: 287 SLGVLPAMVFTPNNKEVL------ASYGGKIYRIPISGEKAIEIPFEVDV 330 Score = 100 bits (249), Expect = 6e-19, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 44/296 (14%) Query: 186 SGIIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G L + +D G+ + + EP FSP+ + + Y++ L Sbjct: 155 KGKRNLKLHLYHKDAGSGTQLIKEPASLKTVEPVFSPDNKYIYYSSRTGGWNYNAQLPQY 214 Query: 245 RIDRA------PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +I R R+ + P SS+GK + + +E + DL S L Sbjct: 215 QISRYDLETGKSTRVTSRYGSAFTPTLSSDGKYMVYGSRYEEKTGLVLRDLISGDENWLA 274 Query: 299 NTLFINISASYSPDS--SQIVFESDR-----EGKEQLYVMQSNGSDQKRISQDKEASY-- 349 + + S + +VF + ++Y + +G I + + Sbjct: 275 YPVQRDEQESVASLGVLPAMVFTPNNKEVLASYGGKIYRIPISGEKAIEIPFEVDVDLAI 334 Query: 350 ---------------------FDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLV 387 P SP G I F + + +M+ DG +RL Sbjct: 335 GPKLEFKYPISDNPEMFANQIRSPKTSPDGKHIVFNALN----KLYIMQLPDGKPKRLTK 390 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQW 442 D N P WSP+G+ ++++ + D G LY ++ G+ L NT A + P W Sbjct: 391 MDVNEMQPNWSPNGKEIVYTTWSEKDGG-HLYKVNAKGGKPIKLTNTSALYNTPVW 445 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 55/311 (17%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I F S+ + + +++ + R +T + + +SP+ + + + Sbjct: 105 SIAFASDRSGNDN----VWILNLETKETRQVTKDKRGAVESVAWSPDGEYI--VAAKGKR 158 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQKDEA--------MDIYS 286 L+++L + I S+ + P FS + K S + I Sbjct: 159 NLKLHLYHKDAGSGTQLIKEPASLKTVEPVFSPDNKYIYYSSRTGGWNYNAQLPQYQISR 218 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 DL++ + R+T+ + + S D +V+ S E K L + D+ ++ + Sbjct: 219 YDLETGKSTRVTSRYGSAFTPTLSSDGKYMVYGSRYEEKTGLVLRDLISGDENWLAYPVQ 278 Query: 347 ASYFDPVWS----------PQGDLIAFTKFSGEKFAIGV-----------MKKDGS---- 381 + V S P + + G+ + I + + D + Sbjct: 279 RDEQESVASLGVLPAMVFTPNNKEVL-ASYGGKIYRIPISGEKAIEIPFEVDVDLAIGPK 337 Query: 382 -QERLLVEDS------NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT 433 + + + D+ +++P SP G+ ++F + +KLY + L +G+ + L Sbjct: 338 LEFKYPISDNPEMFANQIRSPKTSPDGKHIVF------NALNKLYIMQLPDGKPKRLTKM 391 Query: 434 PAYASDPQWVG 444 P W Sbjct: 392 DVNEMQPNWSP 402 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 11/172 (6%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + L+S T +S SPD I+F LY + +G Sbjct: 27 SLSGQEKFKELPLESGRKINFKTTEGTWLSLDISPDGETIIFSM----LGDLYTIPFSGG 82 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQA 394 RI+ D A P +SP G IAF + ++ + + R + +D +++ Sbjct: 83 KATRIT-DGLALDTKPNYSPDGKSIAFASDRSGNDNVWILNLETKETRQVTKDKRGAVES 141 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS--DPQWVG 444 WSP G ++ + K + LY D G LI PA +P + Sbjct: 142 VAWSPDGEYIV-AAKGKRNLKLHLYHKDA-GSGTQLIKEPASLKTVEPVFSP 191 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 26/186 (13%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+ SP+ + + + + ++Y+M D PKR+ + P +S NGK + + Sbjct: 358 PKTSPDGKHIVFNALN-----KLYIMQL-PDGKPKRLTKMDVNEMQPNWSPNGKEIVYTT 411 Query: 277 -QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR------------- 322 + + +Y V+ + +LTNT + + + +++IVF Sbjct: 412 WSEKDGGHLYKVNAKGGKPIKLTNTSALYNTPVWDAKTNRIVFTKGSAQNFKNAYTRGAF 471 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G E L + S+G + I++ V S I + SG + ++ DG+ Sbjct: 472 SGSEDLAWISSDGGEVNFITKTNGRRNPHFVKSDD--RIYLSNGSG----LSSIRWDGTD 525 Query: 383 ERLLVE 388 E+ +V Sbjct: 526 EKKIVS 531 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 117/348 (33%), Gaps = 81/348 (23%) Query: 115 RVIKEGKDRLRVEFRL-WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 R+ G+ + + F + D+ ++ +F + ++ ++ I T G Sbjct: 313 RIPISGEKAIEIPFEVDVDLAIGPKL---EFKYPISDNPEM---FANQIRSPKTSPDG-- 364 Query: 174 NSRILFVSESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 I+F N L +M DG R D +P +SPN +++ Y T+ Sbjct: 365 -KHIVF--------NALNKLYIMQLPDGKPKR--LTKMDVNEMQPNWSPNGKEIVYTTWS 413 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-------------VQKD 279 ++D +Y ++ + P ++ N ++ P + + R + + Sbjct: 414 EKDGGHLYKVNAK-GGKPIKLTNTSALYNTPVWDAKTNRIVFTKGSAQNFKNAYTRGAFS 472 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + D+ + +T T + + S ++ S+ G + +G+D+K Sbjct: 473 GSEDLAWISSDGGEVNFITKTNGR-RNPHFV-KSDDRIYLSNGSGLSSIRW---DGTDEK 527 Query: 340 RI-------SQDKEA------------------SYFDPV---WSPQGDLIAFTKFSGEKF 371 +I + + PV +P+GD A + + + Sbjct: 528 KIVSIRGIVTFGNSHKDNVDFGHVDDDVSEERNNASRPVEVYMAPEGDK-AMALITNDVY 586 Query: 372 AIGV------------MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + V + S + + P+WS G S+ ++ Sbjct: 587 VVTVPKYGQTPTISVSIPSSASFPSWKLTTFGGEFPSWSKDGNSVHWA 634 >gi|283781895|ref|YP_003372650.1| WD40 domain-containing protein beta propeller [Pirellula staleyi DSM 6068] gi|283440348|gb|ADB18790.1| WD40 domain protein beta Propeller [Pirellula staleyi DSM 6068] Length = 360 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 90/274 (32%), Gaps = 49/274 (17%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ +++ Y + + P +I R FS +G + L + Sbjct: 59 FSPDGKQIVYQAQPLDYPFYQIFRQSLDGGRPLQISTGRGRTTCSYFSIDGTKILFASSH 118 Query: 279 --------------------------------DEAMDIYSVDLQSNATERLTNTLFINIS 306 D +++ DL ++LTN + Sbjct: 119 LDPAIDATEAAERKQQEEDKKSGVRRRYKWDFDPYTEMFEADLDGKILKQLTNEKGYDAE 178 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +YS D I F SDR+G LYVM S+G+ ++++ + P SP G + F Sbjct: 179 GAYSKDGKLIAFCSDRDGDADLYVMNSDGTGVRQLT-NAPGYDGGPFISPDGKWVVFRSD 237 Query: 367 SGEK--FAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFS----RKKDGDTGSKLY 419 EK + V+ DG E L + P W PS +I+S L+ Sbjct: 238 RKEKDMLQLFVIGIDGKNETQLTDTNGVNWGPYWHPSEPIIIWSGADHSDPTARPNYDLW 297 Query: 420 SIDLN---------GRNETLINTPAYASDPQWVG 444 + G + + + P + Sbjct: 298 AARYEIASDGKFKLGTTQRVTDFAGADVLPVFSP 331 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 108/301 (35%), Gaps = 50/301 (16%) Query: 170 KGDFN-SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 +G F+ V ++ + DG ++ R + FS + K+ + Sbjct: 56 EGYFSPDGKQIVYQAQPLDYPFYQIFRQSLDGGRPLQISTGRGRTTCS-YFSIDGTKILF 114 Query: 229 ATYD--------------------DEDILRVYLMD----------TRIDRAPKRIGNFRS 258 A+ + R Y D + K++ N + Sbjct: 115 ASSHLDPAIDATEAAERKQQEEDKKSGVRRRYKWDFDPYTEMFEADLDGKILKQLTNEKG 174 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 +S +GK +D D+Y ++ +LTN + SPD +VF Sbjct: 175 YDAEGAYSKDGKLIAFCSDRDGDADLYVMNSDGTGVRQLTNAPGYDGGPFISPDGKWVVF 234 Query: 319 ESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------K 370 SDR+ K+ QL+V+ +G ++ +++ D + P W P +I ++ Sbjct: 235 RSDRKEKDMLQLFVIGIDGKNETQLT-DTNGVNWGPYWHPSEPIIIWSGADHSDPTARPN 293 Query: 371 FAIGVMKKD---------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + + + G+ +R+ P +SP G+ L+++ + D S+L+ Sbjct: 294 YDLWAARYEIASDGKFKLGTTQRVTDFAGADVLPVFSPDGKKLMWTSTRSDDHSSQLFLA 353 Query: 422 D 422 D Sbjct: 354 D 354 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 85/239 (35%), Gaps = 39/239 (16%) Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--DIYSVDLQSNATERLTN 299 ++ + K++ + FS +GK+ + Q + I+ L +++ Sbjct: 36 IEAKTLGNIKQLTSGFVKAGEGYFSPDGKQIVYQAQPLDYPFYQIFRQSLDGGRPLQIST 95 Query: 300 TLFINISASYSPDSSQIVFES--------------------------------DREGKEQ 327 + +S D ++I+F S D + + Sbjct: 96 GRGRTTCSYFSIDGTKILFASSHLDPAIDATEAAERKQQEEDKKSGVRRRYKWDFDPYTE 155 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 ++ +G K+++ +K + +S G LIAF + VM DG+ R L Sbjct: 156 MFEADLDGKILKQLTNEK-GYDAEGAYSKDGKLIAFCSDRDGDADLYVMNSDGTGVRQLT 214 Query: 388 E-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 P SP G+ ++F + +L+ I ++G+NET + + W + Sbjct: 215 NAPGYDGGPFISPDGKWVVFRSDRKEKDMLQLFVIGIDGKNETQLTDTNGVN---WGPY 270 >gi|168702262|ref|ZP_02734539.1| probable TolB protein [Gemmata obscuriglobus UQM 2246] Length = 342 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 121/304 (39%), Gaps = 45/304 (14%) Query: 165 SITGEKGDFN---SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 + +G F+ +R++F +E +G + +MD ++P + F P Sbjct: 37 YVRAGEGYFSPDGTRVIFQAEEKDTGNPFYQIFIMDLRTGKATRISPGVGRTTCG-YFHP 95 Query: 222 NQQKVAY-------------------------------ATYDDEDILRVYLMDTRIDRAP 250 + ++V + ++D + +++Y Sbjct: 96 DGKRVLFASSHSDPDAKKHQEAEVKQREEDKKKGVRRRYSWDFDPHMKIYEAGLDGTGLK 155 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASY 309 + + +S++GK+ + S + +++++ +R+T+ N + Sbjct: 156 CLTPDAKVYTAEGSYSADGKKIVYSAGNAGNVQLFTMNADGTNVKRITDVANCYNGGPFF 215 Query: 310 SPDSSQIVFESDREGKE--QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD +++VF +DR+ K+ QLYV+ ++G+ +K ++ D + Y+ P W I +T Sbjct: 216 SPDGTRVVFRADRKEKDRLQLYVINADGTGEKALTSDDKWVYWAPYWYKDNRHIIYTGAD 275 Query: 368 GEK------FAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + M G + R+ P ++P G ++++ ++G ++LY Sbjct: 276 HSNPIAPPNYDLHWMDTETGKKTRITFAPGQDVLPVFNPDGTKVMWTSSREGGRAAQLYI 335 Query: 421 IDLN 424 D Sbjct: 336 ADFT 339 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 43/212 (20%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EGKE--Q 327 + D + +LT +SPD ++++F+++ G Q Sbjct: 8 LAFAPAADPEDWKGAEAAYLKNIRQLTTDYVRAGEGYFSPDGTRVIFQAEEKDTGNPFYQ 67 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------------------ 369 +++M RIS + P G + F + Sbjct: 68 IFIMDLRTGKATRISP-GVGRTTCGYFHPDGKRVLFASSHSDPDAKKHQEAEVKQREEDK 126 Query: 370 --------------KFAIGVMKKDGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKKDGD 413 I DG+ + L D+ + ++S G+ +++S G Sbjct: 127 KKGVRRRYSWDFDPHMKIYEAGLDGTGLKCLTPDAKVYTAEGSYSADGKKIVYSAGNAG- 185 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 +L++++ +G N I A + F Sbjct: 186 -NVQLFTMNADGTNVKRITDVANCYNG--GPF 214 >gi|218780129|ref|YP_002431447.1| hypothetical protein Dalk_2286 [Desulfatibacillum alkenivorans AK-01] gi|218761513|gb|ACL03979.1| WD40 domain protein beta Propeller [Desulfatibacillum alkenivorans AK-01] Length = 310 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 11/196 (5%) Query: 212 QILFEPRFSPNQQKVAYATYD--DEDILRVYLMDTRID--RAPKRIGNFRSMILAPRFSS 267 I +P ++P ++A+ Y D ++ + D R P++I F M+ P +S Sbjct: 114 GIYAQPTWAPAGFELAFVEYTAVPADAAEIFSIKKEGDIFRLPEKITKFPPMMTFPSYSP 173 Query: 268 NGKRALISVQKDEAM-----DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 +GK + K + + +I +DL++ + +LT+ + +SPD S++ + S+ Sbjct: 174 DGKLMACASFKRDPVLGVIEEIIVIDLKTGSQSQLTHDGADSFFPVWSPDGSKLAYTSNL 233 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 EG ++ + ++ R+++ +P WSP G IAF I + G+ Sbjct: 234 EGNFDIWAVSYPKGEKTRLTRSPSY-DGEPSWSPDGSRIAFISSRSGHREIWTIDAGGAD 292 Query: 383 ERLLVE-DSNLQAPTW 397 R + E S P W Sbjct: 293 SRQVTELKSTCSHPCW 308 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 26/286 (9%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G I+F + + + +L V++ + + LT + Q P SP + +AY + Sbjct: 37 GVKTGDIVFAA----NAQDQWNLWVIEPETKYLSQLTRTT-QTERFPAVSPGGKHIAYVS 91 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---SVQKDEAMDIYSV 287 ++ +MD+ A + + P ++ G + +A +I+S+ Sbjct: 92 ----GRKQIRIMDSLTGEADT-VNLPLGIYAQPTWAPAGFELAFVEYTAVPADAAEIFSI 146 Query: 288 DLQS---NATERLTNTLFINISASYSPDSSQIVFESDREGK-----EQLYVMQSNGSDQK 339 + E++T + SYSPD + S + E++ V+ Q Sbjct: 147 KKEGDIFRLPEKITKFPPMMTFPSYSPDGKLMACASFKRDPVLGVIEEIIVIDLKTGSQS 206 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWS 398 +++ D A F PVWSP G +A+T F I + G + RL S P+WS Sbjct: 207 QLTHDG-ADSFFPVWSPDGSKLAYTSNLEGNFDIWAVSYPKGEKTRLTRSPSYDGEPSWS 265 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWV 443 P G + F + G ++++ID G + + + S P WV Sbjct: 266 PDGSRIAFISSRSGHR--EIWTIDAGGADSRQVTELKSTCSHPCWV 309 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 21/232 (9%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + +A + +D +++++ + ++ P S GK I Sbjct: 43 IVFAA-NAQDQWNLWVIEPET-KYLSQLTRTTQTERFPAVSPGGKHIAYVS---GRKQIR 97 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVMQSNGSD---QK 339 +D + + + L I +++P ++ F + +++ ++ G + Sbjct: 98 IMDSLTGEADTVNLPLGIYAQPTWAPAGFELAFVEYTAVPADAAEIFSIKKEGDIFRLPE 157 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----AIGVMKKDGSQERLLVEDSNLQA 394 +I++ F P +SP G L+A F + I V+ + L D Sbjct: 158 KITKFPPMMTF-PSYSPDGKLMACASFKRDPVLGVIEEIIVIDLKTGSQSQLTHDGADSF 216 Query: 395 -PTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 P WSP G L ++ +G+ ++++ G L +P+Y +P W Sbjct: 217 FPVWSPDGSKLAYTSNLEGNF--DIWAVSYPKGEKTRLTRSPSYDGEPSWSP 266 >gi|125546375|gb|EAY92514.1| hypothetical protein OsI_14253 [Oryza sativa Indica Group] Length = 682 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 143/391 (36%), Gaps = 62/391 (15%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P F S GA LV + G D +E + DV D + +F Sbjct: 276 TPPGFHAFTPAASPGAPGLVAVATRRAGSDYRHIE--VIDVSDDGK---NAYFEVTRPVA 330 Query: 153 KIAHTISDDIYQ-----SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 H + I +G N + E++ S ++ + DG+ Sbjct: 331 PRVHHFNPFISPDGARVGYHRCRGRGNGDSPLLLENIKSPGSPDTFSLFRIDGS------ 384 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 P FS + +K+A+ + +Y+++ ++I + + + + Sbjct: 385 --------FPSFSHDGKKIAFV-----GLPGMYVVNPDGSGGRRKIFSGNAFSTSWDWKR 431 Query: 268 NGKRALISVQKDEAMDIYSVDL----------QSNATERLTNTLFINISASYSPDSSQIV 317 NG S+ D A + VD+ ++ + ++LT N S SPD +V Sbjct: 432 NG-VIYTSIGPDFASESTEVDVVAISLGDDDDETISMKKLTVGGENNAFPSPSPDGKWVV 490 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFS----GEKF 371 F S R G + LY++ + + I + E + D WSP G+ IAF F Sbjct: 491 FRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGEWIAFASDRHAPGSGSF 550 Query: 372 AIGVMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDG------------DTGS 416 AI ++ +G+ R +V + P + P +SL+F+ Sbjct: 551 AIYMVHPNGTGLRRVVHSGDGGRTNHPWFGPDSKSLVFTSDYAAVSAEPVSNPHHYQPYG 610 Query: 417 KLYSIDLNGRNETLINTPAY-ASDPQWVGFM 446 +++++ ++G N + ++ P W ++ Sbjct: 611 EIFTVHIDGSNIRRLTHNSFEDGTPSWTPYL 641 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 44/224 (19%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL---------- 301 R+ + S+ F+ L +++ ++++Y + S+ E L + Sbjct: 62 RLTDGVSVNYNGNFAPASDSILFVSERNGSLNLYLSPVPSSRREALESASSSAATLSPLL 121 Query: 302 -----FINISASYSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDKEASY 349 + S +PD S++V+ S R +Y + + +R++ A Sbjct: 122 PWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLGVA-D 180 Query: 350 FDPVWSPQGDLIAFTKFSGEKF---------AIGVMK-KDGSQERLLVEDSNLQAPTWSP 399 F P SP G+ A + I V + DGS+ L + D P+W+ Sbjct: 181 FSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGW--PSWA- 237 Query: 400 SGRSLIFSRKKDGDTGSKLY----SIDLNG---RNETLINTPAY 436 ++ F R +D D +Y S+ +G + I P + Sbjct: 238 DETTVFFHR-RDSDGWYGVYRAEISVTGDGVEAASVERITPPGF 280 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 40/212 (18%) Query: 269 GKRALISV--QKDEAMDIYSVDLQSN------ATERLTNTLFINISASYSPDSSQIVFES 320 G + + + DI+S+ L + RLT+ + +N + +++P S I+F S Sbjct: 27 GGTIVFTTLGRSRYEFDIFSLPLAPSPHNPAAEELRLTDGVSVNYNGNFAPASDSILFVS 86 Query: 321 DREGKEQLYVMQSNGS--------------DQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +R G LY+ S + + A P +P G + + Sbjct: 87 ERNGSLNLYLSPVPSSRREALESASSSAATLSPLLPWEPIALKDRPSLTPDGSRLVYVST 146 Query: 367 -------SGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSK- 417 A+ + + R L +P SPSG + + Sbjct: 147 AVPAAEPRSSWAAVYSTELSTGRTRRLTPLGVADFSPAVSPSGEWTAAASPGAAGWSGEV 206 Query: 418 ------LYSI-DLNGRNETLINTPAYASDPQW 442 +Y +G +L P W Sbjct: 207 EDLRTDIYVFRTADGSRRSLAIRDG--GWPSW 236 >gi|284040547|ref|YP_003390477.1| peptidase S41 [Spirosoma linguale DSM 74] gi|283819840|gb|ADB41678.1| peptidase S41 [Spirosoma linguale DSM 74] Length = 1097 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 30/257 (11%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 TP+ EP SP+ ++A+ + DI V + + + P +S Sbjct: 29 TPTPKFAYAEPSLSPDGAEIAFVS--GGDIWTV----PAAGGEARLLVSHPDNESRPLYS 82 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DRE 323 +GK + D+Y + L++ T+RLT + ++S D I F+S D Sbjct: 83 PDGKYLAFVSSRTGNGDVYLLTLETGTTKRLTYDDGAEVLNAWSRDGKMIYFQSTAKDIS 142 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------------KFSGEK 370 G +Y + NG I+ D+ A+ F SP G +AF+ ++ Sbjct: 143 GMNDIYRVSVNGGTPMAITADRYANEFYSAPSPDGKTLAFSARGIASNQWWRKGHSHLDE 202 Query: 371 FAIGVMKKD-----GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I ++ D + ERL + P WS G++L + + G L+++ L G Sbjct: 203 SEIWLLHTDAKKAATAYERLTEGGAKELWPMWSADGKALFYVSDR--TRGQNLWTLPLGG 260 Query: 426 RNETLIN-TPAYASDPQ 441 + L + + P Sbjct: 261 KPTMLTSFSNGRVLWPS 277 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 17/214 (7%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +KVA+ + + V+ T+ RI + P ++ N + + Q Sbjct: 332 ALSPDGKKVAFVAHGE-----VFAASTKDGGDATRISTSAANESQPVWTPNSRSLVYVSQ 386 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D A +Y D + RLT+ + S +SPD + + R G ++L V+ Sbjct: 387 RDGAAHLYRYDFATRDETRLTDGALDDSSPVFSPDGKSLAYV--RNG-QELRVLDIATKK 443 Query: 338 QKRIS-----QDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLV--ED 389 + + + S VWSP G IAF + + F I V+ G + + + + Sbjct: 444 DRLLKKAYLGRPPFGSNGAVVWSPDGKWIAFASYGAKTFRNISVIPAIGGESKPVSFLAN 503 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + TWSP G+ ++FS + +T +++ IDL Sbjct: 504 TFGGNVTWSPDGKYILFSTTQRTET-AQIARIDL 536 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 116/329 (35%), Gaps = 54/329 (16%) Query: 155 AHTISDDIYQSITGEK--GDFNSRILFVSE---SVVSGIIKNSLCVMDRDG---ANIRYL 206 A +++ Y + + + F++R + ++ S + ++ + ++ D A Sbjct: 162 ADRYANEFYSAPSPDGKTLAFSARGIASNQWWRKGHSHLDESEIWLLHTDAKKAATAYER 221 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRF 265 P +S + + + Y + L + P + +F +L P Sbjct: 222 LTEGGAKELWPMWSADGKALFYVSDRTRGQ---NLWTLPLGGKPTMLTSFSNGRVLWPSI 278 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLT-------NTLFINI--------SASYS 310 S +GK + + ++ D+ S T L+ + ++ + S Sbjct: 279 SYDGKSIVF----ERDFQLWKYDVASKQTAPLSVKLRGVAASPAVDRLKLTNQFRELALS 334 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD ++ F + E +G D RIS A+ PVW+P + + Sbjct: 335 PDGKKVAFVAH---GEVFAASTKDGGDATRIST-SAANESQPVWTPNSRSLVYVSQRDGA 390 Query: 371 FAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + E L + + + +P +SP G+SL + R G +L +D+ + + Sbjct: 391 AHLYRYDFATRDETRLTDGALDDSSPVFSPDGKSLAYVRN-----GQELRVLDIATKKDR 445 Query: 430 LINTP-------------AYASDPQWVGF 445 L+ ++ D +W+ F Sbjct: 446 LLKKAYLGRPPFGSNGAVVWSPDGKWIAF 474 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 112/302 (37%), Gaps = 40/302 (13%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT--- 230 + ++++ + N + + +G +T R F SP+ + +A++ Sbjct: 128 DGKMIYFQSTAKDISGMNDIYRVSVNGGTPMAITADRYANEFYSAPSPDGKTLAFSARGI 187 Query: 231 ---------YDDEDILRVYLMDTRIDRAP---KRIGNFRSMILAPRFSSNGKRALISVQK 278 + D ++L+ T +A +R+ + L P +S++GK + Sbjct: 188 ASNQWWRKGHSHLDESEIWLLHTDAKKAATAYERLTEGGAKELWPMWSADGKALFYVSDR 247 Query: 279 DEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +++++ L LT+ + + S S D IVFE D QL+ Sbjct: 248 TRGQNLWTLPL-GGKPTMLTSFSNGRVLWPSISYDGKSIVFERD----FQLWKYDVASKQ 302 Query: 338 QKRISQDKEASYFDPVW--------------SPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 +S P SP G +AF GE FA G Sbjct: 303 TAPLSVKLRGVAASPAVDRLKLTNQFRELALSPDGKKVAFVAH-GEVFAASTKD-GGDAT 360 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQW 442 R+ +N P W+P+ RSL++ ++DG + LY D R+ET + A S P + Sbjct: 361 RISTSAANESQPVWTPNSRSLVYVSQRDG--AAHLYRYDFATRDETRLTDGALDDSSPVF 418 Query: 443 VG 444 Sbjct: 419 SP 420 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 30/234 (12%) Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 L + L I + P + P S +G DI++V Sbjct: 10 RSALLISLAAPAIAQTPPATPTPKFAYAEPSLSPDGAEIAFVS----GGDIWTVPAAGGE 65 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 L + YSPD + F S R G +Y++ KR++ D A + Sbjct: 66 ARLLVSHPDNESRPLYSPDGKYLAFVSSRTGNGDVYLLTLETGTTKRLTYDDGAEVLN-A 124 Query: 354 WSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIF 406 WS G +I F + I + +G + D AP SP G++L F Sbjct: 125 WSRDGKMIYFQSTAKDISGMNDIYRVSVNGGTPMAITADRYANEFYSAP--SPDGKTLAF 182 Query: 407 SRK--------KDGDT---GSKLYSIDLNGRN-----ETLINTPAYASDPQWVG 444 S + + G + S+++ + + + E L A P W Sbjct: 183 SARGIASNQWWRKGHSHLDESEIWLLHTDAKKAATAYERLTEGGAKELWPMWSA 236 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 34/274 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G R L D P +SP+ + +A+ + + VYL+ K Sbjct: 55 DIWTVPAAGGEARLLVSHPDN-ESRPLYSPDGKYLAFVSSRTGNG-DVYLLTLETG-TTK 111 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQK---DEAMDIYSVDLQSNATERLTNTL-FINISA 307 R+ + +S +GK DIY V + +T + Sbjct: 112 RLTYDDGAEVLNAWSRDGKMIYFQSTAKDISGMNDIYRVSVNGGTPMAITADRYANEFYS 171 Query: 308 SYSPDSSQIVFESD--------REGKEQ-----LYVMQSNGSDQ----KRISQDKEASYF 350 + SPD + F + R+G ++++ ++ +R+++ A Sbjct: 172 APSPDGKTLAFSARGIASNQWWRKGHSHLDESEIWLLHTDAKKAATAYERLTEGG-AKEL 230 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRK 409 P+WS G + + + + G L + + P+ S G+S++F R Sbjct: 231 WPMWSADGKALFYVSDRTRGQNLWTLPLGGKPTMLTSFSNGRVLWPSISYDGKSIVFERD 290 Query: 410 KDGDTGSKLYSIDLNGRNETLINTP--AYASDPQ 441 +L+ D+ + ++ A+ P Sbjct: 291 ------FQLWKYDVASKQTAPLSVKLRGVAASPA 318 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 129/338 (38%), Gaps = 54/338 (15%) Query: 153 KIAHTISDDIYQSITGEKGDF---NSRILFVSESVVSGIIKNSLCVMDRDGANI--RYLT 207 +AH +++ + T + GD ++ S+ V + ++ + V RDGA RY Sbjct: 342 FVAHG---EVFAASTKDGGDATRISTSAANESQPVWTPNSRSLVYVSQRDGAAHLYRYDF 398 Query: 208 PSRDQILFE--------PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR--IGNFR 257 +RD+ P FSP+ + +AY + LRV + T+ DR K+ +G Sbjct: 399 ATRDETRLTDGALDDSSPVFSPDGKSLAYV--RNGQELRVLDIATKKDRLLKKAYLGRPP 456 Query: 258 -SMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATER---LTNTLFINISASYSPD 312 A +S +GK + + +I + ++ L NT N+ ++SPD Sbjct: 457 FGSNGAVVWSPDGKWIAFASYGAKTFRNISVIPAIGGESKPVSFLANTFGGNV--TWSPD 514 Query: 313 SSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW------SPQGDLIAFTK 365 I+F + R Q+ + K +D+ F+ +P +A T Sbjct: 515 GKYILFSTTQRTETAQIARIDLVPRSPK-FREDQFRDLFNEEVPKTLKPAPTSPAVAKTT 573 Query: 366 FSGEK----FAIGVMKKDGSQERLLVED-----------SNLQAPTWSPSGRSLIFSRKK 410 + K GS +++ ED ++ A + S G++L+ Sbjct: 574 LRDTSTSALGDTAKLGKSGSPTKIVFEDIRQRLSLLPVGVDVDAHSISKDGKTLLLIATV 633 Query: 411 DGDTGSKLYSIDLNGRNE----TLINTPAYASDPQWVG 444 G YS+D GR++ L +T + Q+ Sbjct: 634 AGQQNLYTYSLDELGRDQSVARQLTSTAGNKNGAQFSP 671 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 38/247 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMD--TRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 +SP+ + +A+A+Y + + ++ + + N + +S +GK L S Sbjct: 465 WSPDGKWIAFASYGAKTFRNISVIPAIGGESKPVSFLANTFGGNV--TWSPDGKYILFST 522 Query: 277 -QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY------ 329 Q+ E I +DL + + F ++ P + + S K L Sbjct: 523 TQRTETAQIARIDLVPRSPK-FREDQFRDLFNEEVPKTLKPAPTSPAVAKTTLRDTSTSA 581 Query: 330 -----VMQSNGSDQ--------KRISQDKEA-SYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + +GS +R+S S G + + + Sbjct: 582 LGDTAKLGKSGSPTKIVFEDIRQRLSLLPVGVDVDAHSISKDGKTLLLIATVAGQQNLYT 641 Query: 376 MKKDG-----SQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 D S R L N +SP G+ + + + ++ SI L+ R Sbjct: 642 YSLDELGRDQSVARQLTSTAGNKNGAQFSPDGKEIYYLEQ------GRIQSITLDKREPR 695 Query: 430 LINTPAY 436 + A Sbjct: 696 PLAVTAE 702 >gi|182416136|ref|YP_001821202.1| WD40 domain-containing protein [Opitutus terrae PB90-1] gi|177843350|gb|ACB77602.1| WD40 domain protein beta Propeller [Opitutus terrae PB90-1] Length = 518 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 21/210 (10%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--- 278 + +++ + + ED R + +S +S +GK + + + Sbjct: 308 DGKQLGISHHTAEDDGRSVVYKLPSTGGTPVRVTPKSPSYFHGWSPDGKWMVYTGGRKET 367 Query: 279 ---DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + DIY + RLTN+ ++ +S D I F S R G QL+ M+ +G Sbjct: 368 PGGPDKYDIYKISADGGEEVRLTNSPGLSDGPEFSRDGQWIYFNSTRTGLMQLWRMRPDG 427 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIGVMKKDGSQERL 385 S Q++++ D+ ++F P SP G IAF + + + + +M G Q R+ Sbjct: 428 SGQEQLTNDEFNNWF-PHLSPDGKWIAFISYGQDVKPSEHPYYKQVYLRLMPASGGQPRV 486 Query: 386 LV----EDSNLQAPTWSPSGRSLIFSRKKD 411 + + P+W+P + F D Sbjct: 487 IAYVYGGQGTINVPSWAPDSTRIAFVSNTD 516 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 91/240 (37%), Gaps = 26/240 (10%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD--IY 285 Y Y D + +++ + + + AP + + K L+++ A + Sbjct: 221 YVPYRDYIGAHLEILNVFTGQLA-IVHSSPEQFEAPNWFPDHKTLLVNISGPGANKGRLQ 279 Query: 286 SVDLQSNATERLTNTLF--INISASYSPDSSQIVF---ESDREGKEQLYVMQSNGSDQKR 340 ++DL + T L N + D Q+ ++ +G+ +Y + S G R Sbjct: 280 TLDLVTKQTALLDTGFATRNNNDHVLTFDGKQLGISHHTAEDDGRSVVYKLPSTGGTPVR 339 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVED-SNLQ 393 ++ + + WSP G + +T +K+ I + DG +E L Sbjct: 340 VTPKSPSYFHG--WSPDGKWMVYTGGRKETPGGPDKYDIYKISADGGEEVRLTNSPGLSD 397 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGFM 446 P +S G+ + F+ + G +L+ + +G + + P + D +W+ F+ Sbjct: 398 GPEFSRDGQWIYFNSTRTGLM--QLWRMRPDGSGQEQLTNDEFNNWFPHLSPDGKWIAFI 455 >gi|94494977|ref|ZP_01301558.1| hypothetical protein SKA58_00750 [Sphingomonas sp. SKA58] gi|94425243|gb|EAT10263.1| hypothetical protein SKA58_00750 [Sphingomonas sp. SKA58] Length = 978 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 8/221 (3%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +A+ + + + P +A S +GK + +Q ++ Sbjct: 4 IAWLGTAAPVLAQPANLPPPGGEKPIAFDVHEGTSMAVSASPDGKWLAVDLQGS----LW 59 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 + R+T+ ++PD S +++ + R+G L+ ++ +GSD +R++Q Sbjct: 60 IIPAAGGKARRITDYFNDARQPVWAPDGSHLLYFAYRDGGYDLWTIKPDGSDMRRLTQ-G 118 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSL 404 +PV+SP G IAF+ + I M + + + + PTWSP GR + Sbjct: 119 AYDDREPVYSPDGKTIAFSSDRSGNYDIWTMDVATGAMKQISSNPREDRMPTWSPDGRRV 178 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDPQWVG 444 ++ +G G LY DL E+L+ A P + Sbjct: 179 AYA-GAEGMMGGALYVTDLATGQESLLKKVEGKADAPSFGP 218 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 10/209 (4%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + SP+ + +A D+ + +RI ++ + Sbjct: 24 GGEKPIAFDVHEGTSMAVSASPDGKWLAV------DLQGSLWIIPAAGGKARRITDYFND 77 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P ++ +G L +D D++++ + RLT + + YSPD I F Sbjct: 78 ARQPVWAPDGSHLLYFAYRDGGYDLWTIKPDGSDMRRLTQGAYDDREPVYSPDGKTIAFS 137 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKK 378 SDR G ++ M K+IS + P WSP G +A+ G A+ V Sbjct: 138 SDRSGNYDIWTMDVATGAMKQISSNPREDRM-PTWSPDGRRVAYAGAEGMMGGALYVTDL 196 Query: 379 DGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 QE LL + + AP++ P G +L + Sbjct: 197 ATGQESLLKKVEGKADAPSFGP-GGALAY 224 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 76/202 (37%), Gaps = 22/202 (10%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 I PR S +G R D +Y V + E LT ++ A +SPD +IVF Sbjct: 309 ITHPRLSPDGSRIAFVALGD----LYIVSSKGGTPENLTKDAALDADADWSPDGRRIVFS 364 Query: 320 SDR-EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SDR G QL++ ++++ WSP G IAF G GV Sbjct: 365 SDRVGGLPQLFIKDLKTGKDRQLTNMDTQPLGA-AWSPDGKQIAFIDVDGRWGVAGVCVV 423 Query: 379 D---GSQERLLVEDSNLQAPTWSPSGRSLIFS-----RKKDGDTGSKLYSIDLNGRNETL 430 D G RL +P+WS G+ ++ S + +++Y I ++G + Sbjct: 424 DVASGKVTRLQTSLGQPGSPSWSADGKYVVISLSYKYSNSFREGTNQVYVIPVDGTTKPF 483 Query: 431 INTP--------AYASDPQWVG 444 P S P W Sbjct: 484 WQIPQENMSLDTRSGSGPAWSP 505 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 128/340 (37%), Gaps = 41/340 (12%) Query: 90 KITNPDSIPRFQ-DW-NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 +++ +++ F+ W G + G+V + G + V+F +++ + + Sbjct: 240 QVSGTENVFPFRVSWGTGGGYHYVSDGKVRQGGPRKSTVDF-----AATLEVVRPSYTRA 294 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 W A + I G SRI FV+ L ++ G LT Sbjct: 295 KRDWDSTAPRKALGITHPRLSPDG---SRIAFVAL--------GDLYIVSSKGGTPENLT 343 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 +SP+ +++ +++ + ++++ D + + +++ N + L +S Sbjct: 344 KDAALDADA-DWSPDGRRIVFSSDRVGGLPQLFIKDLKTGKD-RQLTNMDTQPLGAAWSP 401 Query: 268 NGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------ 319 +GK+ + + VD+ S RL +L S S+S D +V Sbjct: 402 DGKQIAFIDVDGRWGVAGVCVVDVASGKVTRLQTSLGQPGSPSWSADGKYVVISLSYKYS 461 Query: 320 -SDREGKEQLYVMQSNGSDQK--RISQDK----EASYFDPVWSPQGDLIAFTKFSGEKFA 372 S REG Q+YV+ +G+ + +I Q+ S P WSP G +A Sbjct: 462 NSFREGTNQVYVIPVDGTTKPFWQIPQENMSLDTRSGSGPAWSPDGTRMA--GIYEGLLK 519 Query: 373 IGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 + + D R D PTWS G++++ Sbjct: 520 VWPVAADAKPLGPARSYTSDIAF-FPTWSGDGKTILVQSN 558 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 61/309 (19%), Positives = 105/309 (33%), Gaps = 41/309 (13%) Query: 156 HTISDDIYQSITGEKG--DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 H +SD + K DF + + V S + D D R Sbjct: 261 HYVSDGKVRQGGPRKSTVDFAATLEVVRPS-------YTRAKRDWDSTAPRKALG----- 308 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + PR SP+ ++A+ D + + P+ + ++ +S +G+R + Sbjct: 309 ITHPRLSPDGSRIAFVALGD------LYIVSSKGGTPENLTKDAALDADADWSPDGRRIV 362 Query: 274 ISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQLYV 330 S + ++ DL++ +LTN + A++SPD QI F R G + V Sbjct: 363 FSSDRVGGLPQLFIKDLKTGKDRQLTNMDTQPLGAAWSPDGKQIAFIDVDGRWGVAGVCV 422 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGS-- 381 + R+ Q P WS G + + F + V+ DG+ Sbjct: 423 VDVASGKVTRL-QTSLGQPGSPSWSADGKYVVISLSYKYSNSFREGTNQVYVIPVDGTTK 481 Query: 382 ------QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 QE + ++ + P WSP G + +G + D T Sbjct: 482 PFWQIPQENMSLDTRSGSGPAWSPDGTRMA--GIYEGLLKVWPVAADAKPLGPARSYTSD 539 Query: 436 YASDPQWVG 444 A P W G Sbjct: 540 IAFFPTWSG 548 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 63/356 (17%), Positives = 115/356 (32%), Gaps = 76/356 (21%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A I+D + S +L+ + L + DG+++R LT Sbjct: 68 ARRITDYFNDARQPVWAPDGSHLLYFAYRDGG----YDLWTIKPDGSDMRRLTQG-AYDD 122 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EP +SP+ + +A+++ D ++ MD K+I + P +S +G+R Sbjct: 123 REPVYSPDGKTIAFSS-DRSGNYDIWTMDVATGAM-KQISSNPREDRMPTWSPDGRRVAY 180 Query: 275 SVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + +Y DL + L + S+ P + + L++ Sbjct: 181 AGAEGMMGGALYVTDLATGQESLLKKVEGKADAPSFGP-GGALAYVVQDASGSHLFIDDK 239 Query: 334 NGSDQK-----RISQDKEASYF-------------------------------------- 350 S + R+S Y Sbjct: 240 QVSGTENVFPFRVSWGTGGGYHYVSDGKVRQGGPRKSTVDFAATLEVVRPSYTRAKRDWD 299 Query: 351 -----------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWS 398 P SP G IAF + ++ G L + + WS Sbjct: 300 STAPRKALGITHPRLSPDGSRIAFVALGD----LYIVSSKGGTPENLTKDAALDADADWS 355 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN------TPAYASDPQWVGFMD 447 P GR ++FS + G +L+ DL G++ L N A++ D + + F+D Sbjct: 356 PDGRRIVFSSDRVGGL-PQLFIKDLKTGKDRQLTNMDTQPLGAAWSPDGKQIAFID 410 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 21/160 (13%) Query: 217 PRFSPNQQKVA------YATYDDEDILRVYLMDTRIDRAP------KRIGNFRSMILAPR 264 P +S + + V Y+ E +VY++ P + + P Sbjct: 443 PSWSADGKYVVISLSYKYSNSFREGTNQVYVIPVDGTTKPFWQIPQENMSLDTRSGSGPA 502 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G R + + + D + R + T I ++S D I+ +S Sbjct: 503 WSPDGTRMAGIYEGLLKVWPVAADAKPLGPAR-SYTSDIAFFPTWSGDGKTILVQS---- 557 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + L + + D + + P G I Sbjct: 558 NDALKTVNLETG----VVTDVPINLTYRLAKPTGRTIIHV 593 >gi|42523526|ref|NP_968906.1| component of the Tol biopolymer transport system [Bdellovibrio bacteriovorus HD100] gi|39575732|emb|CAE79899.1| component of the Tol biopolymer transport system [Bdellovibrio bacteriovorus HD100] Length = 974 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 105/279 (37%), Gaps = 54/279 (19%) Query: 219 FSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV- 276 FSP+ +K+ + + + + + I R+ + K+ L S Sbjct: 69 FSPDGKKMIFQSEREPGNPFYQMYILDLITGDTTRVSPGHGKTTCGWIHPSMKKVLYSST 128 Query: 277 ---------------------------QKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 D++ D++S DL +RLT + SY Sbjct: 129 HLDLETKKKTQEEYDNRKKAVKARYSWSFDDSYDVFSSDLSGKNIQRLTREKGYDAEGSY 188 Query: 310 SPDSSQIVFESDREGKEQ-------------------LYVMQSNGSDQKRISQDKEASYF 350 SPD I F S+R G + +Y+M+++G+ KR++ D + Sbjct: 189 SPDGQWIAFASNRAGYSEKLEGEDKKLFEQDPSYMMDIYIMKADGTQVKRLT-DSKGYDG 247 Query: 351 DPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFS 407 P +S G I + +FS G I M DGS+++ + + ++ AP + PSG +IF Sbjct: 248 GPFFSADGKKITWRRFSPNGSTAEIFTMNVDGSEQKQVTKLKSMSWAPYFHPSGDYIIFG 307 Query: 408 RKKDGDTGSKLYSIDLNGRNE--TLINTPAYASDPQWVG 444 G +L+ +D G+ + + + P + Sbjct: 308 SSVLGYHNFELFIVDAEGKKAPVRVTSDEGFDGLPVFTP 346 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 25/234 (10%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 + + S + D G NI+ LT + E +SP+ Q +A+A+ Sbjct: 146 KKAVKARYSWSFDDSYDVFSSDLSGKNIQRLTREK-GYDAEGSYSPDGQWIAFASNRAGY 204 Query: 236 ILRV-------------YLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALI--SV 276 ++ Y+MD I KR+ + + P FS++GK+ Sbjct: 205 SEKLEGEDKKLFEQDPSYMMDIYIMKADGTQVKRLTDSKGYDGGPFFSADGKKITWRRFS 264 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSN 334 +I+++++ + +++T ++ + + P I+F S G +L+++ + Sbjct: 265 PNGSTAEIFTMNVDGSEQKQVTKLKSMSWAPYFHPSGDYIIFGSSVLGYHNFELFIVDAE 324 Query: 335 GSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLL 386 G R++ D E PV++P G+ +++T + I + K D +Q R L Sbjct: 325 GKKAPVRVTSD-EGFDGLPVFTPDGNSLSWTHRNEKGDSQIFIAKWDDAQARKL 377 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 4/123 (3%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAP 250 + M+ DG+ + +T + + + P F P+ + + + ++++D +AP Sbjct: 271 EIFTMNVDGSEQKQVTKLKS-MSWAPYFHPSGDYIIFGSSVLGYHNFELFIVDAEGKKAP 329 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFIN-ISAS 308 R+ + P F+ +G + + + I+ +L + + S Sbjct: 330 VRVTSDEGFDGLPVFTPDGNSLSWTHRNEKGDSQIFIAKWDDAQARKLLGLPAQDPAAGS 389 Query: 309 YSP 311 SP Sbjct: 390 LSP 392 Score = 42.3 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 5/102 (4%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GD+ + S V G L ++D +G S + P F+P+ Sbjct: 296 YFHPSGDY-----IIFGSSVLGYHNFELFIVDAEGKKAPVRVTSDEGFDGLPVFTPDGNS 350 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 +++ +++ ++++ +A K +G A S Sbjct: 351 LSWTHRNEKGDSQIFIAKWDDAQARKLLGLPAQDPAAGSLSP 392 >gi|167621951|ref|YP_001672245.1| amidohydrolase [Shewanella halifaxensis HAW-EB4] gi|167351973|gb|ABZ74586.1| amidohydrolase [Shewanella halifaxensis HAW-EB4] Length = 1064 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S NGK + + D IY + + + L + + YSP Sbjct: 44 KIDVSEGTWMNVSVSPNGKHVVFDLLGD----IYQMPIDGGEAKPLAEGIAWQMQPVYSP 99 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KF 366 D I F SD +G + +++MQ++GS+ + ++ + P WSP G + FT Sbjct: 100 DGKYIAFTSDEDGGDNIWIMQADGSNPRPVTNETFRLLNSPAWSPDGQYLVARKHFTGSR 159 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G L E N Q P +SP GR + FS+ D+ Sbjct: 160 SLGAGEVWMYHVAGGDGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDS 219 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 +Y I G E LI A P Sbjct: 220 VKGIYKIKRYDTQTGDIEVLIQGTGGAIRPT 250 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN + V + D +Y M K + + + P +S +GK + Sbjct: 56 SVSPNGKHVVFDLLGD-----IYQMPID-GGEAKPLAEGIAWQMQPVYSPDGKYIAFTSD 109 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 +D +I+ + + +TN F + S ++SPD +V F R G ++++ Sbjct: 110 EDGGDNIWIMQADGSNPRPVTNETFRLLNSPAWSPDGQYLVARKHFTGSRSLGAGEVWMY 169 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G D ++++ +P +SP G I F++ + + I Sbjct: 170 HVAGGDGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKIKRY 229 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L++ PT SP G+ L + ++ S LY +DL +G E L Sbjct: 230 DTQTGDIEVLIQGTGGAIRPTPSPDGKKLAYIKRDG--FQSSLYLLDLKSGETEKL 283 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 102/321 (31%), Gaps = 64/321 (19%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 I F S+ + +M DG+N R +T ++L P +SP+ Q + + Sbjct: 103 YIAFTSDEDGGDN----IWIMQADGSNPRPVTNETFRLLNSPAWSPDGQYLVARKHFTGS 158 Query: 232 DDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQKD 279 V++ K N + + P +S +G+ S KD Sbjct: 159 RSLGAGEVWMYHVAGGDGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKD 218 Query: 280 ---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 I D Q+ E L I + SPD ++ + + LY++ Sbjct: 219 SVKGIYKIKRYDTQTGDIEVLIQGTGGAIRPTPSPDGKKLAYIKRDGFQSSLYLLDLKSG 278 Query: 337 DQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + +++ + Y W+ + I F +G+ + V K +Q Sbjct: 279 ETEKLYGDLDRDMQETWAIHGVYPTMSWTADNEEILFWA-NGKINKLDVESKSVAQIPFT 337 Query: 387 VEDSNLQAPT---------------------WSPSGRSLIFSRKKDGDTGSKLYSIDL-N 424 V+ P SP G+ + F + K++ L + Sbjct: 338 VKSERAVQPAVRFTQDLDKDVFDVKMLRMAQVSPDGKKVAF------EALGKIWVKSLPD 391 Query: 425 GRNETLINTPAYASD--PQWV 443 G+ L + + PQW Sbjct: 392 GKMSRLTKLDSDLRELFPQWS 412 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 116/327 (35%), Gaps = 59/327 (18%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G + LT P+ + L EP +SP+ + Sbjct: 141 AWSPDGQYLVARKHFTGSRSLGAGEVWMYHVAGGDGVKLTERPNEQKDLGEPAYSPDGRY 200 Query: 226 VA------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + Y+ + I ++ DT+ + + + P S +GK+ Sbjct: 201 IYFSQDATPGKTFHYSKDSVKGIYKIKRYDTQTGD-IEVLIQGTGGAIRPTPSPDGKKLA 259 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDR 322 + +Y +DL+S TE+L L ++ S++ D+ +I+F + Sbjct: 260 YIKRDGFQSSLYLLDLKSGETEKLYGDLDRDMQETWAIHGVYPTMSWTADNEEILFWA-- 317 Query: 323 EGKEQLYVMQSNGSDQKRI----------------SQDKEASYFD------PVWSPQGDL 360 ++ + +I +QD + FD SP G Sbjct: 318 --NGKINKLDVESKSVAQIPFTVKSERAVQPAVRFTQDLDKDVFDVKMLRMAQVSPDGKK 375 Query: 361 IAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSK 417 +AF I V DG RL DS+L+ P WS G+ ++F+ D + G+ Sbjct: 376 VAFEALG----KIWVKSLPDGKMSRLTKLDSDLRELFPQWSRDGKRIVFTTWDDQEQGTV 431 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVG 444 + N R + L N P +P + Sbjct: 432 SLATVRNKRVKALTNEPGKYVEPTFSP 458 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 19/200 (9%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +KVA+ I L D ++ R K + R L P++S +GKR + + D Sbjct: 370 SPDGKKVAFEAL--GKIWVKSLPDGKMSRLTKLDSDLR--ELFPQWSRDGKRIVFTTWDD 425 Query: 280 EAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQLY 329 + S+ +++ + LTN + ++SPD +V+ + G LY Sbjct: 426 QEQGTVSLATVRNKRVKALTNEPGKYVEPTFSPDGETVVYRKAKGGYITPRTWSQETGLY 485 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + +G +I+ + P + D + F + SGE + + +G ++R+ Sbjct: 486 QVDIDGDKNTKITAAG----YQPQFGADNDRVYFME-SGETPQLASIGLNGFEKRVHYTS 540 Query: 390 SNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 541 KHATEFRVSPDGKQLAFAER 560 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 105/302 (34%), Gaps = 55/302 (18%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + D +I L + P SP+ +K+AY D +Y Sbjct: 214 HYSKDSVKGIYKIKRYDTQTGDIEVLIQGTGGAI-RPTPSPDGKKLAYIKRD-GFQSSLY 271 Query: 241 LMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 L+D + K G+ + ++++ + L I +D++ Sbjct: 272 LLDLKSGETEKLYGDLDRDMQETWAIHGVYPTMSWTADNEEILFWA----NGKINKLDVE 327 Query: 291 SNATERL----------------TNTLFINIS-------ASYSPDSSQIVFESDREGKEQ 327 S + ++ T L ++ A SPD ++ FE+ + Sbjct: 328 SKSVAQIPFTVKSERAVQPAVRFTQDLDKDVFDVKMLRMAQVSPDGKKVAFEA----LGK 383 Query: 328 LYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTKFSG---EKFAIGVMKKDGSQE 383 ++V R+++ D + P WS G I FT + ++ ++ + Sbjct: 384 IWVKSLPDGKMSRLTKLDSDLRELFPQWSRDGKRIVFTTWDDQEQGTVSLATVRNKRVKA 443 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 L E PT+SP G ++++ + K G + LY +D++G T I Y Sbjct: 444 -LTNEPGKYVEPTFSPDGETVVYRKAKGGYITPRTWSQETGLYQVDIDGDKNTKITAAGY 502 Query: 437 AS 438 Sbjct: 503 QP 504 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TP 434 Q ++ V + + SP+G+ ++F D +Y + ++G + P Sbjct: 42 QIKIDVSEGTWMNVSVSPNGKHVVF------DLLGDIYQMPIDGGEAKPLAEGIAWQMQP 95 Query: 435 AYASDPQWVGF 445 Y+ D +++ F Sbjct: 96 VYSPDGKYIAF 106 >gi|77164951|ref|YP_343476.1| WD-40-like beta propeller repeat-containing protein [Nitrosococcus oceani ATCC 19707] gi|254433763|ref|ZP_05047271.1| hypothetical protein NOC27_694 [Nitrosococcus oceani AFC27] gi|76883265|gb|ABA57946.1| WD40-like Beta Propeller [Nitrosococcus oceani ATCC 19707] gi|207090096|gb|EDZ67367.1| hypothetical protein NOC27_694 [Nitrosococcus oceani AFC27] Length = 367 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 110/287 (38%), Gaps = 46/287 (16%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD------- 232 + +S + +++ MD DG N+R ++ + +P+ Q + YA+ Sbjct: 80 IFQSTRDDLKCDAIFRMDADGKNVRQVSSGKGVTTCSF-IAPDDQAIIYASTHLAGDQCP 138 Query: 233 -DEDILRVYLMDTRID----------RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 D + Y+ R+ + +S G + + + + Sbjct: 139 PKPDYSQGYVWPLYEGYDIFRADPEGGNRVRLTDTPGYDAEGVYSPKGDKIIFTSARTGD 198 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGKE-------------- 326 ++++ ++ + E+LT+ + A +S D IV+ + R EGK Sbjct: 199 LELFMMNPDGSEVEQLTDQPGYDGGAFFSRDGQWIVWRASRPEGKALADYQSLLKQGLIR 258 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKK 378 ++++M +++ + A+ F P W P G I F+ G F + ++ Sbjct: 259 PSQLEIFIMNLEERKPIQLTDNGAAN-FGPYWHPDGKHIIFSSNMHNPKGRNFDLFLINV 317 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSID 422 D + + + P +S G+ L+F+ ++G + + ++ +D Sbjct: 318 DTREIEQITHHPDFDGFPMFSHDGKKLVFASNRNGKVEGETNVFMVD 364 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 98/268 (36%), Gaps = 44/268 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FS + +++ + + D+ + +++ + + + + + + + + Sbjct: 72 FSFDGKELIFQSTRDDLKCDAIFRMDADGKNVRQVSSGKGVTTCSFIAPDDQAIIYASTH 131 Query: 279 --------------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 E DI+ D + RLT+T + YSP +I+F Sbjct: 132 LAGDQCPPKPDYSQGYVWPLYEGYDIFRADPEGGNRVRLTDTPGYDAEGVYSPKGDKIIF 191 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------- 369 S R G +L++M +GS+ ++++ D+ +S G I + E Sbjct: 192 TSARTGDLELFMMNPDGSEVEQLT-DQPGYDGGAFFSRDGQWIVWRASRPEGKALADYQS 250 Query: 370 ----------KFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK- 417 + I +M + + L ++ P W P G+ +IFS G Sbjct: 251 LLKQGLIRPSQLEIFIMNLEERKPIQLTDNGAANFGPYWHPDGKHIIFSSNMHNPKGRNF 310 Query: 418 -LYSIDLNGRN-ETLINTPAYASDPQWV 443 L+ I+++ R E + + P + P + Sbjct: 311 DLFLINVDTREIEQITHHPDFDGFPMFS 338 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 34/180 (18%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFD 351 +LT N A +S D +++F+S R+ + ++ M ++G + +++S K Sbjct: 58 LRQLTFG-GQNAEAYFSFDGKELIFQSTRDDLKCDAIFRMDADGKNVRQVSSGK-GVTTC 115 Query: 352 PVWSPQGDLIAFTKFS--------------------GEKFAIGVMKKDGSQERLLVEDSN 391 +P I + E + I +G L + Sbjct: 116 SFIAPDDQAIIYASTHLAGDQCPPKPDYSQGYVWPLYEGYDIFRADPEGGNRVRLTDTPG 175 Query: 392 LQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAY------ASDPQWV 443 A +SP G +IF+ + GD +L+ ++ +G E L + P Y + D QW+ Sbjct: 176 YDAEGVYSPKGDKIIFTSARTGD--LELFMMNPDGSEVEQLTDQPGYDGGAFFSRDGQWI 233 >gi|294508417|ref|YP_003572475.1| conserved hypothetical protein, secreted [Salinibacter ruber M8] gi|294344745|emb|CBH25523.1| conserved hypothetical protein, secreted [Salinibacter ruber M8] Length = 1065 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 31/240 (12%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS---------MIL 261 +Q+ P SP+ + VA+ + + +++ D + + RS + Sbjct: 329 NQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINS 388 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA----SYSPDSSQIV 317 A +S +G+R D +I + ++Q+ T T N+ A ++SPD I Sbjct: 389 AGAWSPDGRRFAFITFADGRNEINTFNVQTGEIR--TRTAVENVGAIHNLAWSPDGQSIA 446 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---FSGEKFA-- 372 F G LYV + + ++++ D+ A+ P WSP G+ +AFT G F Sbjct: 447 FSGLEGGLSDLYVYDLDQKNVRQLTNDRYAAL-QPTWSPDGETLAFTTDRGRDGTNFETL 505 Query: 373 ------IGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 IG++ + + R + P +SP GRS+ F +DG +Y DL+ Sbjct: 506 EYGEERIGLIDVESGEIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDG--FKDVYRYDLD 563 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 24/215 (11%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATER-L--TNT-------LF 302 G + ++P S +G+ +++ +++ D ++ + L T + F Sbjct: 326 GADNQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRF 385 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLI 361 IN + ++SPD + F + +G+ ++ + + R + + + + WSP G I Sbjct: 386 INSAGAWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQSI 445 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGS---- 416 AF+ G + V D R L D PTWSP G +L F+ + D + Sbjct: 446 AFSGLEGGLSDLYVYDLDQKNVRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGTNFETL 505 Query: 417 -----KLYSIDL-NGRNETLIN-TPAYASDPQWVG 444 ++ ID+ +G T+ + +PQ+ Sbjct: 506 EYGEERIGLIDVESGEIRTIRPFSTGMQHNPQFSP 540 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 22/231 (9%) Query: 179 FVSESVVSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEP--------RFSPNQQKVAYA 229 +V+ + +L V D G ++ L +R F+ +SP+ ++ A+ Sbjct: 343 YVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAGAWSPDGRRFAFI 402 Query: 230 TY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T+ D + + + + T R + N I +S +G+ S + D+Y D Sbjct: 403 TFADGRNEINTFNVQTGEIRTRTAVENV-GAIHNLAWSPDGQSIAFSGLEGGLSDLYVYD 461 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDRE-----------GKEQLYVMQSNGSD 337 L +LTN + + ++SPD + F +DR G+E++ ++ + Sbjct: 462 LDQKNVRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGTNFETLEYGEERIGLIDVESGE 521 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + I +P +SP G I F + D + E Sbjct: 522 IRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGFKDVYRYDLDEEATYRVTE 572 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 94/259 (36%), Gaps = 35/259 (13%) Query: 161 DIYQSI--TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP---------- 208 +I Q + T F++ S S + + DG N Sbjct: 366 EIVQELEGTRSNPHFDALRFINSAGAWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRT 425 Query: 209 --SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + +SP+ Q +A++ + + +Y+ D + +++ N R L P +S Sbjct: 426 AVENVGAIHNLAWSPDGQSIAFSGLE-GGLSDLYVYDLD-QKNVRQLTNDRYAALQPTWS 483 Query: 267 SNGKRALISVQKD-----------EAMDIYSVDLQSNATERL-TNTLFINISASYSPDSS 314 +G+ + + I +D++S + + + + +SPD Sbjct: 484 PDGETLAFTTDRGRDGTNFETLEYGEERIGLIDVESGEIRTIRPFSTGMQHNPQFSPDGR 543 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP------QGDLIAFTKFSG 368 I F +D++G + +Y + R+++ K SP + + F+ FS Sbjct: 544 SIYFVADQDGFKDVYRYDLDEEATYRVTELKTGVSGITALSPALSVARRSGRMMFSVFSN 603 Query: 369 EKFAI-GVMKKDGSQERLL 386 ++I G+ ++ ER+ Sbjct: 604 GGYSIVGLSPEETKGERMT 622 >gi|85710151|ref|ZP_01041216.1| hypothetical protein NAP1_14738 [Erythrobacter sp. NAP1] gi|85688861|gb|EAQ28865.1| hypothetical protein NAP1_14738 [Erythrobacter sp. NAP1] Length = 1096 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 16/182 (8%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 RI + S +G ++ D IY++ + R+ + L + +SP Sbjct: 44 RIQTDEGTWMDVDVSPDGSTIAFNLLGD----IYTMPIAGGTPRRIADGLAWEVQPRFSP 99 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKF 366 D ++I F SDR G + ++VM +GSD+++++++ P WSP G I T Sbjct: 100 DGTKIAFTSDRGGGDNIWVMNVDGSDKRQVTKESFRLLNQPYWSPDGRFIIAKKHFTTSR 159 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSN------LQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 S I + G +VE ++ L P +SP G ++ ++R +Y+ Sbjct: 160 SAGTGEIWMYHVSGGGGVAIVERADEALQKELGEPVFSPDGEAIYYTRNTT-PGNQFIYA 218 Query: 421 ID 422 D Sbjct: 219 QD 220 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +A+ D +Y M P+RI + + + PRFS +G + + + Sbjct: 58 SPDGSTIAFNLLGD-----IYTMPI-AGGTPRRIADGLAWEVQPRFSPDGTKIAFTSDRG 111 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ +++ + ++T F ++ +SPD I+ F + R G ++++ Sbjct: 112 GGDNIWVMNVDGSDKRQVTKESFRLLNQPYWSPDGRFIIAKKHFTTSRSAGTGEIWMYHV 171 Query: 334 NGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVM 376 +G +R + + +PV+SP G+ I +T+ FAI Sbjct: 172 SGGGGVAIVERADEALQKELGEPVFSPDGEAIYYTRNTTPGNQFIYAQDSQTGIFAIERH 231 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + V+ PT SP G + F R+ S+L+ DL E +I Sbjct: 232 DLETGEVTTAVDGYGGAVRPTPSPDGTEMAFVRRD--KDTSQLWVKDLATGAERMI 285 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 99/297 (33%), Gaps = 42/297 (14%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 I ++G + + S ++ + + M G R + +PRFSP+ Sbjct: 44 RIQTDEGTWMDVDVSPDGSTIAFNLLGDIYTMPIAGGTPRRIADGL-AWEVQPRFSPDGT 102 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD- 279 K+A+ + D +++M+ + ++ P +S +G+ + + + Sbjct: 103 KIAFTS-DRGGGDNIWVMNVDGSDKRQVTKESFRLLNQPYWSPDGRFIIAKKHFTTSRSA 161 Query: 280 --EAMDIYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-GKEQLYVMQS 333 + +Y V + +SPD I + + G + +Y S Sbjct: 162 GTGEIWMYHVSGGGGVAIVERADEALQKELGEPVFSPDGEAIYYTRNTTPGNQFIYAQDS 221 Query: 334 NGS---------DQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + ++ D P SP G +AF + + + V Sbjct: 222 QTGIFAIERHDLETGEVTTAVDGYGGAVRPTPSPDGTEMAFVRRDKDTSQLWVKDLATGA 281 Query: 383 ERLLVED------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 ER++ + W+P GRS++F G KL ID +G N Sbjct: 282 ERMIYDALDLDLQETWAVYGVYPNMDWTPDGRSIVFWA------GGKLNRIDSDGSN 332 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 24/211 (11%) Query: 216 EPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP--RFSSNGK 270 PRF SP+ +V + + R+Y R AP+ + + FS +G Sbjct: 365 MPRFGQLSPDGTQVVFESLG-----RLYTKSARGRDAPRPLTGAAEGTIEGFLAFSRDGS 419 Query: 271 RALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----- 324 R DE + I + D +T+ ++SPD I +E G Sbjct: 420 RIAYVEWTDEDLGRIITADANGQNPRAITSEPGHYGDLTWSPDGRHIAYEKRGGGFLTSP 479 Query: 325 ----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 +Y++ SNG + R+S+ +P + + I T SG+ + DG Sbjct: 480 AYSETTGIYMIPSNGGEPMRVSRSG----SNPQFGSDPERIYMTTGSGDGLQLVSADLDG 535 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +R +++ + SP GR++ F + + Sbjct: 536 EDQRTIIKGALPSDFRVSPDGRTVAFRQNYE 566 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 96/279 (34%), Gaps = 57/279 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP----------KRIGNFRSMILAP 263 P SP+ ++A+ D +D ++++ D + + Sbjct: 248 AVRPTPSPDGTEMAFVRRD-KDTSQLWVKDLATGAERMIYDALDLDLQETWAVYGVYPNM 306 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN------------TLFINISA---- 307 ++ +G+ + + +D + + I +S Sbjct: 307 DWTPDGRSIVFWA----GGKLNRIDSDGSNFAEIPFSIDDTRGIADAPHPAIEVSPDRFT 362 Query: 308 -------SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDP-VWSPQG 358 SPD +Q+VFES +LY + G D R ++ E + +S G Sbjct: 363 TTMPRFGQLSPDGTQVVFES----LGRLYTKSARGRDAPRPLTGAAEGTIEGFLAFSRDG 418 Query: 359 DLIAFTKFSGEKF-AIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 IA+ +++ E I +G R + E + TWSP GR + + ++ G S Sbjct: 419 SRIAYVEWTDEDLGRIITADANGQNPRAITSEPGHYGDLTWSPDGRHIAYEKRGGGFLTS 478 Query: 417 -------KLYSIDLNGRNETLI----NTPAYASDPQWVG 444 +Y I NG + + P + SDP+ + Sbjct: 479 PAYSETTGIYMIPSNGGEPMRVSRSGSNPQFGSDPERIY 517 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 10/111 (9%) Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-P 395 +Q RI D E ++ D SP G IAF I M G R + + + P Sbjct: 41 EQVRIQTD-EGTWMDVDVSPDGSTIAFNLLGD----IYTMPIAGGTPRRIADGLAWEVQP 95 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 +SP G + F+ + G G ++ ++++G ++ + ++ + P W Sbjct: 96 RFSPDGTKIAFTSDRGG--GDNIWVMNVDGSDKRQVTKESFRLLNQPYWSP 144 >gi|260061328|ref|YP_003194408.1| WD40-like beta Propeller protein [Robiginitalea biformata HTCC2501] gi|88785460|gb|EAR16629.1| WD40-like Beta Propeller protein [Robiginitalea biformata HTCC2501] Length = 368 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 118/302 (39%), Gaps = 55/302 (18%) Query: 171 GDFNSR-ILFVSESVVSGIIKNSLCVMDR----DGANIRYLTPSRDQILFEPRFSPNQQK 225 F++R ++F S G+ + + +MD +G+ ++ + F P+ + Sbjct: 65 WSFDNRQLIFQSNYEKWGVECDQMFLMDAGETFNGSVPPMVSTGMGRTTCG-YFMPDNEH 123 Query: 226 VAYATYDDEDI--------------------LRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Y + D +++ D + ++ + Sbjct: 124 ILYGSTHLRDPECPEVPLRENGKYVWPVYDSFDIFVADLQ-GNIVDQLTDEPGYDAEATV 182 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S G R + + + +++Y+++L + ++T+ L + A +SPD +QI+F + R Sbjct: 183 SPQGDRIVFTSDRSGDLELYTMNLDGSDVRQITDELGYDGGAFFSPDGTQIIFRASRPET 242 Query: 326 --------------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +L++ ++GSD ++++ A++ P + P GD I F+ Sbjct: 243 EAEIAEYKDLLSRGLVQPTEMELFICNADGSDLRQLTFLGNANW-SPFFHPDGDKILFSS 301 Query: 366 F----SGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK--DGDTGSKL 418 G F + ++ DG+ + A P +SP G+ L FS + G + L Sbjct: 302 NFESEGGFPFNLYLIGTDGTGLERVTHGQTFDAFPVFSPDGKYLAFSSNRNNGGTRDTNL 361 Query: 419 YS 420 + Sbjct: 362 FI 363 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 32/170 (18%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGK----EQLYVMQSN---GSDQKRISQD 344 + ++T N A +S D+ Q++F+S+ E +Q+++M + + Sbjct: 49 KSIRQVTFG-GDNAEAYWSFDNRQLIFQSNYEKWGVECDQMFLMDAGETFNGSVPPMVST 107 Query: 345 KEASYFDPVWSPQGDLIAFTKFS---------------------GEKFAIGVMKKDGSQE 383 + P + I + + F I V G+ Sbjct: 108 GMGRTTCGYFMPDNEHILYGSTHLRDPECPEVPLRENGKYVWPVYDSFDIFVADLQGNIV 167 Query: 384 RLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 L + T SP G ++F+ + GD +LY+++L+G + I Sbjct: 168 DQLTDEPGYDAEATVSPQGDRIVFTSDRSGD--LELYTMNLDGSDVRQIT 215 Score = 39.2 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R++ + + + GD +ILF S G +L ++ DG + +T Sbjct: 273 SDLRQLT-FLGNANWSPFFHPDGD---KILFSSNFESEGGFPFNLYLIGTDGTGLERVTH 328 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILR 238 + P FSP+ + +A+++ + R Sbjct: 329 GQ-TFDAFPVFSPDGKYLAFSSNRNNGGTR 357 >gi|268316197|ref|YP_003289916.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333731|gb|ACY47528.1| peptidase S9B dipeptidylpeptidase IV domain protein [Rhodothermus marinus DSM 4252] Length = 1028 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 32/259 (12%) Query: 179 FVSESVVSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEP--------RFSPNQQKVAYA 229 +V+ + L V D G +R L+ S F+ +SP+ Q+ A+ Sbjct: 308 YVAFLSERDLFTIDLFVADAETGKVLRRLSSSASDPHFDAIRFINSSGSWSPDGQRFAFI 367 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T+ + + + + R + +RI I +S +G+ S D+Y +D Sbjct: 368 TFAQGNN-EIAIWNLRKGKLERRIAVEGVGAIHNLAWSPDGRTIAFSGLSGGISDLYLLD 426 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDRE-----------GKEQLYVMQSNGSD 337 L++N +LT+ + ++ ++SPD I F SDR G E+L ++ Sbjct: 427 LETNQVRKLTDDRYADLQPAWSPDGRTIAFVSDRGPDGTDFEILRYGHERLALLDLETGK 486 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAP 395 + + + +P +SP G + F I M + + + Sbjct: 487 VRVLRPFRNGQQINPQFSPDGRSLYFISNHDGFKDIYRMDLNTGAVYRITRLQTGVSGIT 546 Query: 396 TWSP-------SGRSLIFS 407 + SP +GR +FS Sbjct: 547 SISPAMSVAAQNGRM-MFS 564 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 28/255 (10%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS---------M 259 +I P SP+ + VA+ + D + +++ D + +R+ + S + Sbjct: 292 DAGEINLAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASDPHFDAIRFI 351 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI--SASYSPDSSQIV 317 + +S +G+R +I +L+ ER + + ++SPD I Sbjct: 352 NSSGSWSPDGQRFAFITFAQGNNEIAIWNLRKGKLERRIAVEGVGAIHNLAWSPDGRTIA 411 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--------- 368 F G LY++ + ++++ D+ A P WSP G IAF G Sbjct: 412 FSGLSGGISDLYLLDLETNQVRKLTDDRYADL-QPAWSPDGRTIAFVSDRGPDGTDFEIL 470 Query: 369 --EKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + ++ + + R+L + P +SP GRSL F DG +Y +DLN Sbjct: 471 RYGHERLALLDLETGKVRVLRPFRNGQQINPQFSPDGRSLYFISNHDG--FKDIYRMDLN 528 Query: 425 -GRNETLINTPAYAS 438 G + S Sbjct: 529 TGAVYRITRLQTGVS 543 >gi|284040960|ref|YP_003390890.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] gi|283820253|gb|ADB42091.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] Length = 667 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 135/346 (39%), Gaps = 62/346 (17%) Query: 159 SDDIY--QSITGEKGDFNSRIL---FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 S DIY QS++ + + + + + + L ++ DG LT + + Sbjct: 34 SSDIYRLQSLSDPQISPDGKWVTYGLSTVDTTKDKRNSDLWMVSWDGKETVQLTNTPEG- 92 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 RFSP+ + +++ + + R K++ + ++ + +S +GK+ Sbjct: 93 ESRARFSPDGKYISFVSARQGATKGQIWLMDRRGGEAKKLTDLKTDLEEYVWSPDGKKIA 152 Query: 274 ISVQKD-------------------------------EAMDIYSVDLQSNATERLTNTLF 302 + ++ ++ +Y D+ S + LT + Sbjct: 153 MVLRDPDYADSAKTKVRKPYVLDRYHFKADVKGYLEKGSVHLYVYDVASKKLDTLTTGNY 212 Query: 303 INISASYSPDSSQIVFES------DREGKEQLYVMQS-NGSDQKRISQDKEASYFDPVWS 355 S ++SPD SQ+ F S DR +YV+ + G+ K+++ S +P WS Sbjct: 213 DETSPTWSPDGSQLAFVSNRTEDPDRNQNTDIYVIDAKKGATMKQLTT-WPGSDNNPEWS 271 Query: 356 PQGDLIAFTKFS-GEKF------AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIF 406 P G IA+T+ + F + V+ +DG + LL + D ++ P W+ G+++ Sbjct: 272 PDGKRIAYTRSTASGNFLMYDQPVLAVISRDGGEPTLLSKALDRPVRNPRWAKDGQTIGV 331 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPA------YASDPQWVGFM 446 + D T Y+ L+G+ + + + W+ M Sbjct: 332 LVQDDRQTYVGQYT--LDGKLAKVASGNRVFTELEPVASGSWLTLM 375 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 18/209 (8%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR-----VYLMDTRID 247 L V D + LT + P +SP+ ++A+ + ED R +Y++D + Sbjct: 194 LYVYDVASKKLDTLTTG-NYDETSPTWSPDGSQLAFVSNRTEDPDRNQNTDIYVIDAKKG 252 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQ-------KDEAMDIYSVDLQSNATERLTNT 300 K++ + P +S +GKR + + + + L+ Sbjct: 253 ATMKQLTTWPGSDNNPEWSPDGKRIAYTRSTASGNFLMYDQPVLAVISRDGGEPTLLSKA 312 Query: 301 LFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 L + + ++ D I + + + +G K S ++ + +PV S G Sbjct: 313 LDRPVRNPRWAKDGQTIGVLVQDDRQTYVGQYTLDGKLAKVASGNRVFTELEPVAS--GS 370 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + + + R L Sbjct: 371 WLTLMSDPQTPGELYAI--ESGAPRRLTH 397 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 34/233 (14%) Query: 126 VEFRLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 V ++DV +K + + + +W G S++ FVS Sbjct: 192 VHLYVYDVASKKLDTLTTGNYDETSPTW----------------SPDG---SQLAFVSNR 232 Query: 184 V--VSGIIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + V+D GA ++ LT P +SP+ +++AY +Y Sbjct: 233 TEDPDRNQNTDIYVIDAKKGATMKQLTTW-PGSDNNPEWSPDGKRIAYTRSTASGNFLMY 291 Query: 241 LMDT-----RIDRAPKRIGN-FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 R P + + PR++ +G+ + VQ D + L Sbjct: 292 DQPVLAVISRDGGEPTLLSKALDRPVRNPRWAKDGQTIGVLVQDDRQTYVGQYTLDGK-L 350 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 ++ + + S + SD + +LY + +R++ +A Sbjct: 351 AKVASGNRVFTELEPVASGSWLTLMSDPQTPGELYAI--ESGAPRRLTHVHDA 401 >gi|127510948|ref|YP_001092145.1| amidohydrolase [Shewanella loihica PV-4] gi|126636243|gb|ABO21886.1| amidohydrolase [Shewanella loihica PV-4] Length = 1067 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 34/246 (13%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P ++ + K A + + L +ID + S +GK+ + + Sbjct: 26 PTWAAD--KDAPPAWQVNAPAKAPLEQVKIDVT-------EGTWMNVSVSPDGKQIVFDL 76 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D IY + ++ + L + + YSPD I F SD +G + ++VM ++G+ Sbjct: 77 LGD----IYQMPIEGGEAKPLAQGIAWQMQPVYSPDGKYIAFTSDEDGGDNIWVMNADGT 132 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIA----FT-KFSGEKFAIGVMKKDGSQERLLVEDSN 391 D + ++++ P WSP + FT S + + G L E N Sbjct: 133 DPRPVTKETFRLLNSPAWSPDSQYLIGRKHFTGSRSLGAGEVWLYHVAGGTGVKLTERPN 192 Query: 392 LQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----DLNGRNETLINTPA 435 Q P +SP GR + FS+ D+ +Y I G E L+ Sbjct: 193 EQKDLGEPAYSPDGRYVYFSQDATPGKTFHYSKDSVKGIYKIKRYDTQTGDIEVLVEGTG 252 Query: 436 YASDPQ 441 A P Sbjct: 253 GAIRPT 258 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 23/202 (11%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQ 277 SP+ KV Y + L + + R+ + + L P++S +GK+ + + Sbjct: 378 SPDGDKVVY------EALGKLWVKRLPEGKVSRLTDLDDQVRELYPQWSRDGKKIVFTTW 431 Query: 278 KDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQ 327 D+ + ++ + ++ LT + ++SPD +V+ + G Sbjct: 432 DDDQQGSVRVINARGGRSKTLTQEPGKYVEPTFSPDGELVVYRKIKGGYITPRTWSQEPG 491 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LYV+ G + ++I+ D F P + + D + F GE + + G Q+R+ Sbjct: 492 LYVVDIKGKESRKITPDG----FQPQFGAESDRVYFMDH-GETPQLASINLHGFQKRVHY 546 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 547 TSKHATEFRVSPDGKQLAFAER 568 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 90/255 (35%), Gaps = 27/255 (10%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + M +G + L +P +SP+ + +A+ Sbjct: 57 EGTWMNVSVSPDGKQIVFDLLGDIYQMPIEGGEAKPLAQG-IAWQMQPVYSPDGKYIAFT 115 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + +D + D P FR + +P +S + + + + + A ++ Sbjct: 116 SDEDGGDNIWVMNADGTDPRPVTKETFRLLN-SPAWSPDSQYLIGRKHFTGSRSLGAGEV 174 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQL 328 + + +LT +YSPD + F D G ++ Sbjct: 175 WLYHVAGGTGVKLTERPNEQKDLGEPAYSPDGRYVYFSQDATPGKTFHYSKDSVKGIYKI 234 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + + + P SP G +A+ K G + + ++ ++ L + Sbjct: 235 KRYDTQTGDIEVLV-EGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYLLDLKSGKKTKLYD 293 Query: 389 --DSNLQAPTWSPSG 401 D ++Q TW+ G Sbjct: 294 KLDRDMQE-TWAIHG 307 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 104/314 (33%), Gaps = 59/314 (18%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVA----------- 227 + + + + G LT P+ + L EP +SP+ + V Sbjct: 162 HFTGSRSLGAGEVWLYHVAGGTGVKLTERPNEQKDLGEPAYSPDGRYVYFSQDATPGKTF 221 Query: 228 -YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y+ + I ++ DT+ + + + P S +G + + +Y Sbjct: 222 HYSKDSVKGIYKIKRYDTQTGD-IEVLVEGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYL 280 Query: 287 VDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +DL+S +L + L ++ S++ ++ ++VF + ++ + Sbjct: 281 LDLKSGKKTKLYDKLDRDMQETWAIHGVYPTMSWTANNEELVFWA----GGKINRLDIES 336 Query: 336 SDQK----------------RISQDKEASYFD------PVWSPQGDLIAFTKFSGEKFAI 373 K R Q+ + FD SP GD + + + Sbjct: 337 KSAKEIPFKVKTELAVQPSVRFKQNLDQDSFDVKMLRMAQVSPDGDKVVYEALG----KL 392 Query: 374 GVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 V + + L + P WS G+ ++F+ D GS GR++TL Sbjct: 393 WVKRLPEGKVSRLTDLDDQVRELYPQWSRDGKKIVFTTWDDDQQGSVRVINARGGRSKTL 452 Query: 431 INTPAYASDPQWVG 444 P +P + Sbjct: 453 TQEPGKYVEPTFSP 466 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 103/324 (31%), Gaps = 70/324 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 I F S+ + VM+ DG + R +T ++L P +SP+ Q + + Sbjct: 111 YIAFTSDEDGGDN----IWVMNADGTDPRPVTKETFRLLNSPAWSPDSQYLIGRKHFTGS 166 Query: 232 DDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQKD 279 V+L K N + + P +S +G+ S KD Sbjct: 167 RSLGAGEVWLYHVAGGTGVKLTERPNEQKDLGEPAYSPDGRYVYFSQDATPGKTFHYSKD 226 Query: 280 ---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 I D Q+ E L I + SPD +++ + + LY++ Sbjct: 227 SVKGIYKIKRYDTQTGDIEVLVEGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYLLDLKSG 286 Query: 337 DQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + ++ + Y W+ + + F ++G K I + + + + Sbjct: 287 KKTKLYDKLDRDMQETWAIHGVYPTMSWTANNEELVF--WAGGK--INRLDIESKSAKEI 342 Query: 387 ---VEDSNLQAPT---------------------WSPSGRSLIFSRKKDGDTGSKLYSID 422 V+ P+ SP G +++ + KL+ Sbjct: 343 PFKVKTELAVQPSVRFKQNLDQDSFDVKMLRMAQVSPDGDKVVY------EALGKLWVKR 396 Query: 423 L-NGRNETLINTPAYASD--PQWV 443 L G+ L + + PQW Sbjct: 397 LPEGKVSRLTDLDDQVRELYPQWS 420 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 78/193 (40%), Gaps = 22/193 (11%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN--TLFINISASYSPDSSQI 316 M+ + S +G + + ++ L RLT+ + +S D +I Sbjct: 371 MLRMAQVSPDGDKVVYEA----LGKLWVKRLPEGKVSRLTDLDDQVRELYPQWSRDGKKI 426 Query: 317 VFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF---- 371 VF + D + + + V+ + G K ++Q+ Y +P +SP G+L+ + K G Sbjct: 427 VFTTWDDDQQGSVRVINARGGRSKTLTQE-PGKYVEPTFSPDGELVVYRKIKGGYITPRT 485 Query: 372 -----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + V+ G + R + D P + + F D +L SI+L+G Sbjct: 486 WSQEPGLYVVDIKGKESRKITPDGFQ--PQFGAESDRVYFM---DHGETPQLASINLHGF 540 Query: 427 NETLINTPAYASD 439 + + T +A++ Sbjct: 541 QKRVHYTSKHATE 553 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 68/258 (26%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + + S+ V++ G + LT + + EP FSP+ + V Y Sbjct: 426 IVFTTWDDDQQGSVRVINARGGRSKTLTQEPGKYV-EPTFSPDGELVVY----------- 473 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPR-FSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 ++I + + PR +S + +Y VD++ + ++T Sbjct: 474 -----------RKI---KGGYITPRTWS-------------QEPGLYVVDIKGKESRKIT 506 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 F + +S ++ F D QL + +G QKR+ + + + SP G Sbjct: 507 PDGF---QPQFGAESDRVYFM-DHGETPQLASINLHGF-QKRVHYTSKHA-TEFRVSPDG 560 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------------TWSPSGRSLIF 406 +AF E+F + V E + + P +W+ L + Sbjct: 561 KQLAFA----ERFKVWVTPFAKHGETIEIGPKADNLPVTQLSVRAGESISWNGDSDQLYW 616 Query: 407 SRKKDGDTGSKLYSIDLN 424 + G +LY +D++ Sbjct: 617 T------LGPELYQMDVD 628 >gi|91204490|emb|CAJ70990.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1003 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 113/307 (36%), Gaps = 63/307 (20%) Query: 199 DGANI-RYLTPSRDQILFEPR-----FSPNQQKVAYATYDDED--ILRVYLMDTRIDRAP 250 DGA ++L +R I R FS + + + + + D ++Y++D Sbjct: 29 DGAKEEQFLKNTRQLIYQGKRSGEGYFSEDGNALIFQSEREPDNPFFQIYILDLETGD-T 87 Query: 251 KRIGNFRSMILAPRFSSNGKRALI----------------------------SVQKDEAM 282 R+ L S DE Sbjct: 88 NRVSPGTGKTTCSFIRPGSNEVLFASTHLDPEATAKQKAEFDIRASGENKRFSWDYDEHY 147 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE---------------- 326 DI+S + +R+T L + +YSPD S+IVF S R+ Sbjct: 148 DIFSAHRDGSNPKRMTEALGYDAEGAYSPDGSKIVFCSLRDAYPIEHLSAGDKKRFETDP 207 Query: 327 ----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAIGVMKKDG 380 ++Y+M ++GS Q R++ + P +SP G I + F +G + M DG Sbjct: 208 SYFGEIYIMNADGSGQTRLTH-QPGYDGGPFFSPDGKRIIWRHFKENGLLADVYTMNLDG 266 Query: 381 SQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--TLINTPAYA 437 S +R L + ++ AP + PS +IF K G +L+ +D+ G+ E + T + Sbjct: 267 SDKRRLTDFGSMSWAPYYHPSNTYIIFHSNKYGFANCELFIVDVYGKKEPVRVTFTDGFD 326 Query: 438 SDPQWVG 444 P + Sbjct: 327 GLPVFSP 333 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 92/241 (38%), Gaps = 31/241 (12%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + + F+ R S ++ ++ + DI + R PKR+ +S +G Sbjct: 123 KQKAEFDIRASGENKRFSWDYDEHYDIFSAH----RDGSNPKRMTEALGYDAEGAYSPDG 178 Query: 270 KRALISVQKDEAM--------------------DIYSVDLQSNATERLTNTLFINISASY 309 + + +D +IY ++ + RLT+ + + Sbjct: 179 SKIVFCSLRDAYPIEHLSAGDKKRFETDPSYFGEIYIMNADGSGQTRLTHQPGYDGGPFF 238 Query: 310 SPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD +I++ + +Y M +GSD++R++ S+ P + P I F Sbjct: 239 SPDGKRIIWRHFKENGLLADVYTMNLDGSDKRRLTDFGSMSW-APYYHPSNTYIIFHSNK 297 Query: 368 GE--KFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + ++ G +E R+ D P +SP G+ L+++ + S+L+ D Sbjct: 298 YGFANCELFIVDVYGKKEPVRVTFTDGFDGLPVFSPDGKKLVWTSNRTPQKNSQLFIADW 357 Query: 424 N 424 N Sbjct: 358 N 358 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 27/202 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY------------------ 231 + RDG+N + +T + E +SP+ K+ + + Sbjct: 146 HYDIFSAHRDGSNPKRMTEAL-GYDAEGAYSPDGSKIVFCSLRDAYPIEHLSAGDKKRFE 204 Query: 232 -DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVD 288 D +Y+M+ R+ + P FS +GKR + K+ D+Y+++ Sbjct: 205 TDPSYFGEIYIMNADGSGQT-RLTHQPGYDGGPFFSPDGKRIIWRHFKENGLLADVYTMN 263 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNG-SDQKRISQDK 345 L + RLT+ ++ + Y P ++ I+F S++ G +L+++ G + R++ Sbjct: 264 LDGSDKRRLTDFGSMSWAPYYHPSNTYIIFHSNKYGFANCELFIVDVYGKKEPVRVTF-T 322 Query: 346 EASYFDPVWSPQGDLIAFTKFS 367 + PV+SP G + +T Sbjct: 323 DGFDGLPVFSPDGKKLVWTSNR 344 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 56/233 (24%) Query: 265 FSSNGKRALISVQK---DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES- 320 FS +G + ++ + IY +DL++ T R++ + P S++++F S Sbjct: 55 FSEDGNALIFQSEREPDNPFFQIYILDLETGDTNRVSPGTGKTTCSFIRPGSNEVLFAST 114 Query: 321 ---------------------------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 D + ++ +GS+ KR++ + + Sbjct: 115 HLDPEATAKQKAEFDIRASGENKRFSWDYDEHYDIFSAHRDGSNPKRMT-EALGYDAEGA 173 Query: 354 WSPQGDLIAFTKFSG------------EKF--------AIGVMKKDGSQERLLVED-SNL 392 +SP G I F ++F I +M DGS + L Sbjct: 174 YSPDGSKIVFCSLRDAYPIEHLSAGDKKRFETDPSYFGEIYIMNADGSGQTRLTHQPGYD 233 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 P +SP G+ +I+ K+ + +Y+++L+G ++ + W + Sbjct: 234 GGPFFSPDGKRIIWRHFKENGLLADVYTMNLDGSDKRRLT---DFGSMSWAPY 283 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 6/152 (3%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + +M+ DG+ LT + P FSP+ +++ + + + +L + Sbjct: 212 EIYIMNADGSGQTRLTH-QPGYDGGPFFSPDGKRIIWRHFKENGLLADVYTMNLDGSDKR 270 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMD--IYSVDLQSNA-TERLTNTLFINISAS 308 R+ +F SM AP + + + K + ++ VD+ R+T T + Sbjct: 271 RLTDFGSMSWAPYYHPSNTYIIFHSNKYGFANCELFIVDVYGKKEPVRVTFTDGFDGLPV 330 Query: 309 YSPDSSQIVFESDR--EGKEQLYVMQSNGSDQ 338 +SPD ++V+ S+R + QL++ N + Sbjct: 331 FSPDGKKLVWTSNRTPQKNSQLFIADWNHEEA 362 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S + S G L ++D G D P FSP+ +K+ + + Sbjct: 287 SNTYIIFHSNKYGFANCELFIVDVYGKKEPVRVTFTDGFDGLPVFSPDGKKLVWTSNRTP 346 Query: 235 D 235 Sbjct: 347 Q 347 >gi|83816446|ref|YP_446482.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855] gi|83757840|gb|ABC45953.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855] Length = 1065 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 31/240 (12%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS---------MIL 261 +Q+ P SP+ + VA+ + + +++ D + + RS + Sbjct: 329 NQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINS 388 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA----SYSPDSSQIV 317 A +S +G+R D +I + ++Q+ T T N+ A ++SPD I Sbjct: 389 AGAWSPDGRRFAFITFADGRNEINTFNVQTGEIR--TRTAVENVGAIHNLAWSPDGQSIA 446 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---FSGEKFA-- 372 F G LYV + + ++++ D+ A+ P WSP G+ +AFT G F Sbjct: 447 FSGLEGGLSDLYVYDLDQKNVRQLTNDRYAAL-QPTWSPDGETLAFTTDRGRDGTNFETL 505 Query: 373 ------IGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 IG++ + R + P +SP GRS+ F +DG +Y DL+ Sbjct: 506 EYGEERIGLIDVASGEIRTIRPFSTGMQHNPQFSPDGRSIYFVADQDG--FKDVYRYDLD 563 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 24/215 (11%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATER-L--TNT-------LF 302 G + ++P S +G+ +++ +++ D ++ + L T + F Sbjct: 326 GADNQLNISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRF 385 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLI 361 IN + ++SPD + F + +G+ ++ + + R + + + + WSP G I Sbjct: 386 INSAGAWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRTAVENVGAIHNLAWSPDGQSI 445 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGS---- 416 AF+ G + V D R L D PTWSP G +L F+ + D + Sbjct: 446 AFSGLEGGLSDLYVYDLDQKNVRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGTNFETL 505 Query: 417 -----KLYSIDL-NGRNETLIN-TPAYASDPQWVG 444 ++ ID+ +G T+ + +PQ+ Sbjct: 506 EYGEERIGLIDVASGEIRTIRPFSTGMQHNPQFSP 540 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 22/231 (9%) Query: 179 FVSESVVSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEP--------RFSPNQQKVAYA 229 +V+ + +L V D G ++ L +R F+ +SP+ ++ A+ Sbjct: 343 YVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAGAWSPDGRRFAFI 402 Query: 230 TY-DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T+ D + + + + T R + N I +S +G+ S + D+Y D Sbjct: 403 TFADGRNEINTFNVQTGEIRTRTAVENV-GAIHNLAWSPDGQSIAFSGLEGGLSDLYVYD 461 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDRE-----------GKEQLYVMQSNGSD 337 L +LTN + + ++SPD + F +DR G+E++ ++ + Sbjct: 462 LDQKNVRQLTNDRYAALQPTWSPDGETLAFTTDRGRDGTNFETLEYGEERIGLIDVASGE 521 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + I +P +SP G I F + D + E Sbjct: 522 IRTIRPFSTGMQHNPQFSPDGRSIYFVADQDGFKDVYRYDLDEEATYRVTE 572 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 35/259 (13%) Query: 161 DIYQSI--TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP---------- 208 +I Q + T F++ S S + + DG N Sbjct: 366 EIVQELEGTRSNPHFDALRFINSAGAWSPDGRRFAFITFADGRNEINTFNVQTGEIRTRT 425 Query: 209 --SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + +SP+ Q +A++ + + +Y+ D + +++ N R L P +S Sbjct: 426 AVENVGAIHNLAWSPDGQSIAFSGLE-GGLSDLYVYDLD-QKNVRQLTNDRYAALQPTWS 483 Query: 267 SNGKRALISVQKD-----------EAMDIYSVDLQSNATERL-TNTLFINISASYSPDSS 314 +G+ + + I +D+ S + + + + +SPD Sbjct: 484 PDGETLAFTTDRGRDGTNFETLEYGEERIGLIDVASGEIRTIRPFSTGMQHNPQFSPDGR 543 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP------QGDLIAFTKFSG 368 I F +D++G + +Y + R+++ K SP + + F+ FS Sbjct: 544 SIYFVADQDGFKDVYRYDLDEEATYRVTELKTGVSGITALSPALSVARRSGRMMFSVFSN 603 Query: 369 EKFAI-GVMKKDGSQERLL 386 ++I G+ ++ ER+ Sbjct: 604 GGYSIVGLSPEETKGERMT 622 >gi|327538740|gb|EGF25390.1| peptidase M28 [Rhodopirellula baltica WH47] Length = 1074 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 54/315 (17%) Query: 163 YQSITGEKGDFN---SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 ++ +G F+ +R++F SE S + V D + +I+ ++P + Sbjct: 79 FEGRRAGEGYFSADGTRMVFQSERDPSNPF-YQIYVSDLETGDIQRVSPGFGKTTCG-WI 136 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 PN +KV +A+ T D +R+ F ++G+ S D Sbjct: 137 HPNGEKVLFAS-------------THADANSERLQKEEL-----DFRASGESRRYSWDYD 178 Query: 280 EAMDIYSVDLQ------SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ------ 327 ++Y+ +L + LT+ + + ASYSPD QIVF S+R + Sbjct: 179 PNYELYAAELDQIEPGTTKGLTALTSAMGYDAEASYSPDGKQIVFASNRAAYSRELTERE 238 Query: 328 -------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFA 372 LY+M ++GS+ KR++ + P +SP G I + +F +G Sbjct: 239 QEQFERDPAFMIDLYIMNADGSNVKRLTNE-PGYDGGPFFSPDGQRICWRRFAPNGATAE 297 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--T 429 I MK DGS + L E ++ AP + PSG L+F+ K G +LY + +G E Sbjct: 298 IFTMKTDGSDVQRLTEINAMSWAPFYHPSGEFLVFTTNKHGFANFELYLVRADGEGEPVR 357 Query: 430 LINTPAYASDPQWVG 444 L T + P ++ Sbjct: 358 LTTTEGFDGLPVFLP 372 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 94/253 (37%), Gaps = 38/253 (15%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL-----TPSRDQI 213 +D + + E+ DF + S L + D S Sbjct: 150 ADANSERLQKEELDFRASGESRRYS-WDYDPNYELYAAELDQIEPGTTKGLTALTSAMGY 208 Query: 214 LFEPRFSPNQQKVAYAT------------------YDDEDILRVYLMDTRIDRAPKRIGN 255 E +SP+ +++ +A+ D ++ +Y+M+ KR+ N Sbjct: 209 DAEASYSPDGKQIVFASNRAAYSRELTEREQEQFERDPAFMIDLYIMNAD-GSNVKRLTN 267 Query: 256 FRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 P FS +G+R +I+++ + +RLT ++ + Y P Sbjct: 268 EPGYDGGPFFSPDGQRICWRRFAPNGATAEIFTMKTDGSDVQRLTEINAMSWAPFYHPSG 327 Query: 314 SQIVFESDREG--KEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 +VF +++ G +LY+++++G + R++ E PV+ P G+ +++T Sbjct: 328 EFLVFTTNKHGFANFELYLVRADGEGEPVRLTT-TEGFDGLPVFLPNGNQLSWTTTR--- 383 Query: 371 FAIGVMKKDGSQE 383 V+ DG Sbjct: 384 ----VVDSDGKVV 392 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 70/186 (37%), Gaps = 23/186 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +M+ DG+N++ LT P FSP+ Q++ + + + Sbjct: 251 DLYIMNADGSNVKRLTN-EPGYDGGPFFSPDGQRICWRRFAPNGATAEIFTMKTDGSDVQ 309 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE--AMDIYSVDLQS-NATERLTNTLFINISAS 308 R+ +M AP + +G+ + + K ++Y V RLT T + Sbjct: 310 RLTEINAMSWAPFYHPSGEFLVFTTNKHGFANFELYLVRADGEGEPVRLTTTEGFDGLPV 369 Query: 309 YSPDSSQIVFESDR-----------EGKE-----QLYVMQSNGSDQKR---ISQDKEASY 349 + P+ +Q+ + + R +G+ Q+Y+ + +R +++ + Sbjct: 370 FLPNGNQLSWTTTRVVDSDGKVVLEDGEPKKSTSQIYLADFDVETARRRLGLTESSDNDS 429 Query: 350 FDPVWS 355 D S Sbjct: 430 TDEDAS 435 >gi|171909807|ref|ZP_02925277.1| probable TolB protein [Verrucomicrobium spinosum DSM 4136] Length = 1009 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 115/308 (37%), Gaps = 46/308 (14%) Query: 163 YQSITGEKGDF--NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++ +G F + + G + +MD + + ++P + Sbjct: 57 FEGKRSGEGYFNADGSKMIFQSEREPGNPFYQIYLMDLETGDQERISPGSGKTTCA-WIH 115 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ + +A+ + + +R R+ S D+ Sbjct: 116 PDNDHILFASTHLDPESKAKQDAEYKERESSRVRR------------------YSWDYDQ 157 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--------------- 325 D++ L+ + +++T + + SPD ++VF S+R Sbjct: 158 RYDLFLYSLKDKSLKQITREEGYDAEGAISPDGKRVVFASNRAAYSEPLSPADTERLKID 217 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMKKD 379 ++Y M +G+D KR++ P +S G I + +F+ G+ I M D Sbjct: 218 KQYFMEIYTMNVDGTDVKRLTT-TPGYDGGPFFSHDGSKICWRRFNEKGDIAEIYTMNAD 276 Query: 380 GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--TLINTPAY 436 GS ++ + + + AP + PSG LIF+ +G +LY++D G++E + T + Sbjct: 277 GSDQKQITKLGAMSWAPYFHPSGDYLIFTNNVNGFANFELYAVDAAGKHEPVRITTTDGF 336 Query: 437 ASDPQWVG 444 P + Sbjct: 337 DGLPVFSP 344 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 51/199 (25%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDRE-GKE--QLYVMQSNGSDQKRISQDKEAS 348 +LT + ++ D S+++F+S+RE G Q+Y+M DQ+RIS Sbjct: 50 TNIRQLTFEGKRSGEGYFNADGSKMIFQSEREPGNPFYQIYLMDLETGDQERISP-GSGK 108 Query: 349 YFDPVWSPQGDLIAFTKFS----------------------------GEKFAIGVMKKDG 380 P D I F +++ + + Sbjct: 109 TTCAWIHPDNDHILFASTHLDPESKAKQDAEYKERESSRVRRYSWDYDQRYDLFLYSLKD 168 Query: 381 SQERLLV-EDSNLQAPTWSPSGRSLIFSRKK-----------------DGDTGSKLYSID 422 + + E+ SP G+ ++F+ + D ++Y+++ Sbjct: 169 KSLKQITREEGYDAEGAISPDGKRVVFASNRAAYSEPLSPADTERLKIDKQYFMEIYTMN 228 Query: 423 LNGRN-ETLINTPAYASDP 440 ++G + + L TP Y P Sbjct: 229 VDGTDVKRLTTTPGYDGGP 247 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GD+ + + V+G L +D G + + D P FSP+ +K Sbjct: 294 YFHPSGDY-----LIFTNNVNGFANFELYAVDAAGKHEPVRITTTDGFDGLPVFSPDGKK 348 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKR 252 +++ + + D A ++ Sbjct: 349 LSWTSGRTSGGASQIFLADWNDAAARK 375 >gi|116626608|ref|YP_828764.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229770|gb|ABJ88479.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 638 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 29/252 (11%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 ++K+A A + + + P ++ +G + + +++ Sbjct: 46 HTRRKIALARVYPQPGQLGLFVAASDGSDEHPLLASADTDYDPAWAPDGGSIVFTSERNG 105 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQK 339 + D++ V+ + ++LT + A++S DS Q+ F S R G L+ M + Sbjct: 106 SADLFRVNPDGSGLKQLTADPAYDDQATFSSDSKQLAFVSTRGGGTANLWTMDLVTGRAR 165 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-------------AIGVMKKDGSQERLL 386 ++ F P WSP G IAF+ I V++ DGS + + Sbjct: 166 ALTS-GPGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWERLQLSDIYVIRPDGSGLKKI 224 Query: 387 VEDSNLQ-APTWSPSGRS-LIFS-----------RKKDGDTGSKLYSIDLNGRNETLINT 433 + N +P W + + D ++L SID T +NT Sbjct: 225 TKSGNFCGSPKWMGDSSHVIAYCMTAEQTLANRRASPDPGNDTRLVSIDTGTAASTELNT 284 Query: 434 -PAYASDPQWVG 444 P +P W+ Sbjct: 285 GPGVKINPSWLP 296 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 37/262 (14%) Query: 217 PRFSPNQQKVAYAT--YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P FSP+ +++ + + + + + +L +S +G+R + Sbjct: 371 PAFSPSGRELVTNSPPSATPRGSSISVTALETGISKVVYEDKNRNVLVGGWSPDGRRIIF 430 Query: 275 SV-------------------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 ++ + + + V+ LT N S+SPD + Sbjct: 431 AIGEFAAFFDGFHSRFLKVGDRAETGARLAIVNADGTGLTELTAEPGNNAFPSFSPDGKR 490 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 V+ + E L +M K +++ P+WSP+GDLI F++ + I Sbjct: 491 FVYRTFTEDGYGLRIMNLETKTGKILTR---QYDNFPLWSPRGDLITFSRQIEGAYEIYT 547 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG-----------DTGSKLYSIDL 423 +K DGS + L N WSP G ++F+ + G +++ + Sbjct: 548 IKPDGSSLKRLTFTKGNDAHMAWSPDGEYIVFTSSRMGFKDEVAYTDAPQPYGEIFVMRY 607 Query: 424 NGRNETLINTPAY-ASDPQWVG 444 +G + + P W Sbjct: 608 DGTGVEQLTDNQWEEGTPAWQP 629 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 106/301 (35%), Gaps = 36/301 (11%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++R V + L V DG++ L S D ++P ++P+ + + + + Sbjct: 46 HTRRKIALARVYPQPGQLGLFVAASDGSDEHPLLASAD-TDYDPAWAPDGGSIVFTSERN 104 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSN 292 + K++ + FSS+ K+ + +++++DL + Sbjct: 105 GSADLFRVNPDGSG--LKQLTADPAYDDQATFSSDSKQLAFVSTRGGGTANLWTMDLVTG 162 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDRE-------GKEQ------LYVMQSNGSDQK 339 LT+ + S+SPD I F S R+ G+ + +YV++ +GS K Sbjct: 163 RARALTSGPGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWERLQLSDIYVIRPDGSGLK 222 Query: 340 RISQDKEASYFDPVWSPQGDL-IAFTKFSGEKFAIGVMKKDGSQERLL------------ 386 +I++ P W IA+ + + A D + L Sbjct: 223 KITKSGN-FCGSPKWMGDSSHVIAYCMTAEQTLANRRASPDPGNDTRLVSIDTGTAASTE 281 Query: 387 --VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P+W P G + RK D G +Y I +++ D + V Sbjct: 282 LNTGPGVKINPSWLP-GNETGYIRKDTADPG--IYYSSGRRGPAGQIRGASWSPDGKLVV 338 Query: 445 F 445 F Sbjct: 339 F 339 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 24/198 (12%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY- 231 F+SR L V + +G L +++ DG + LT F P FSP+ ++ Y T+ Sbjct: 442 FHSRFLKVGDRAETGA---RLAIVNADGTGLTELTAEPGNNAF-PSFSPDGKRFVYRTFT 497 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +D LR+ ++T+ + R P +S G S Q + A +IY++ Sbjct: 498 EDGYGLRIMNLETKTGKILTR-----QYDNFPLWSPRGDLITFSRQIEGAYEIYTIKPDG 552 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQ 338 ++ +RLT T + ++SPD IVF S R G +++VM+ +G+ Sbjct: 553 SSLKRLTFTKGNDAHMAWSPDGEYIVFTSSRMGFKDEVAYTDAPQPYGEIFVMRYDGTGV 612 Query: 339 KRISQDKEASYFDPVWSP 356 ++++ D + P W P Sbjct: 613 EQLT-DNQWEEGTPAWQP 629 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 63/413 (15%), Positives = 113/413 (27%), Gaps = 135/413 (32%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 +D Y D + ++ FVS +L MD R LT F P Sbjct: 124 ADPAYDDQATFSSD-SKQLAFVSTRGGGTA---NLWTMDLVTGRARALTSGPGG-DFRPS 178 Query: 219 FSPNQQKVAYAT-------YDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSS 267 +SP+ + +A+++ + R+ L D + K+I + +P++ Sbjct: 179 WSPDGKWIAFSSGRDNPVPFASGRWERLQLSDIYVIRPDGSGLKKITKSGNFCGSPKWMG 238 Query: 268 NGKR-ALISVQKDEAMDIYSVDLQSNATERL----------------------------- 297 + + ++ + RL Sbjct: 239 DSSHVIAYCMTAEQTLANRRASPDPGNDTRLVSIDTGTAASTELNTGPGVKINPSWLPGN 298 Query: 298 --------TNTLFINIS------------ASYSPDSSQIVFE------------------ 319 T I S AS+SPD +VF Sbjct: 299 ETGYIRKDTADPGIYYSSGRRGPAGQIRGASWSPDGKLVVFCRRANTPRPAGGAKRTFSR 358 Query: 320 -----------------SDRE-----------GKEQLYVMQSNGSDQKRISQDKEASYFD 351 S RE + V K + +DK + Sbjct: 359 NSKYELSLTGILPAFSPSGRELVTNSPPSATPRGSSISVTALETGISKVVYEDKNRNVLV 418 Query: 352 PVWSPQGDLIAFT-------------------KFSGEKFAIGVMKKDGSQERLLV-EDSN 391 WSP G I F + + ++ DG+ L E N Sbjct: 419 GGWSPDGRRIIFAIGEFAAFFDGFHSRFLKVGDRAETGARLAIVNADGTGLTELTAEPGN 478 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P++SP G+ ++ + G ++ ++L + ++ T Y + P W Sbjct: 479 NAFPSFSPDGKRFVYRTFTEDGYGLRI--MNLETKTGKIL-TRQYDNFPLWSP 528 >gi|307295800|ref|ZP_07575633.1| amidohydrolase [Sphingobium chlorophenolicum L-1] gi|306878456|gb|EFN09677.1| amidohydrolase [Sphingobium chlorophenolicum L-1] Length = 992 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 8/215 (3%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + SP+ + +A D+ + +RI ++ + Sbjct: 37 GGETPIAFDVHEGTSMAVSVSPDGKWLAV------DLQGSLWIIPAKGGKARRITDYFND 90 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P +S +G R +D D++++ + +LT + + ++SPD I F Sbjct: 91 ARQPVWSPDGSRLAYFAYRDGGYDLWTIRPDGSDMRKLTGGAWDDREPTWSPDGRTIAFS 150 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SDR G ++ + K+ S + P WSP G IA+ G K A+ Sbjct: 151 SDRSGNYDIWTLDVASGAVKQRSSNPREDRM-PSWSPDGASIAYAGIDGGKTALYATSLA 209 Query: 380 GSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGD 413 +E LL + + AP++ P+G+ + G Sbjct: 210 DGKESLLKQVAGRIDAPSYGPAGQLAYVVQDAKGS 244 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 125/340 (36%), Gaps = 37/340 (10%) Query: 88 KQKITNPDSIPRFQ-DWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 + ++ +++ F+ W G + G++ RL D + + + Sbjct: 250 GKTVSGTENVFPFRISWGKSGYHYVSDGKIRYRSGPRL----ATVDFAATLEAVKASYPR 305 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL 206 + W A + I G SRI FV+ L +M G L Sbjct: 306 AKRDWDSTAPRKALGIVHPTISPDG---SRIAFVAL--------GDLYLMSSKGGTPENL 354 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T + +P +SP+ Q +AY + + ++++ D + + +++ + + L +S Sbjct: 355 TKD-AALDADPAWSPDGQSIAYTSDKGGGLPQLWIRDLKSGKD-RKLTSIDTQPLGAAWS 412 Query: 267 SNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF------ 318 +G+R + + VD+ + RL ++L S ++SPD + Sbjct: 413 PDGRRIAFLDVDGRWGVAGVCVVDVATGKITRLQSSLGQPGSPTWSPDGKYVAIALSYKY 472 Query: 319 -ESDREGKEQLYVMQSNGSDQK--RISQDKEASY----FDPVWSPQGDLIAFTKFSGEKF 371 S REG Q+YV+ ++G + +I Q + P WSP G +A Sbjct: 473 SNSFREGTNQVYVIPADGKGEPFWQIPQANAGTDTRGGGGPAWSPDGMKMA--AIYEGLL 530 Query: 372 AIGVMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSRK 409 I + DG PTW+ R++++ Sbjct: 531 KIWPVSADGKPMGPPRSYTSEIAHFPTWTGDSRTILYQSS 570 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 67/358 (18%), Positives = 118/358 (32%), Gaps = 81/358 (22%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A I+D + SR+ + + L + DG+++R LT Sbjct: 81 ARRITDYFNDARQPVWSPDGSRLAYFAYRDGG----YDLWTIRPDGSDMRKLT-GGAWDD 135 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EP +SP+ + +A+++ D ++ +D +R N R P +S +G Sbjct: 136 REPTWSPDGRTIAFSS-DRSGNYDIWTLDVASGAVKQRSSNPRE-DRMPSWSPDGASIAY 193 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + +Y+ L L + SY P D +G ++ + Sbjct: 194 AGIDGGKTALYATSLADGKESLLKQVAGRIDAPSYGPAGQLAYVVQDAKGSH----LEVD 249 Query: 335 GSDQK--------RISQDKEASYF------------------------------------ 350 G RIS K ++ Sbjct: 250 GKTVSGTENVFPFRISWGKSGYHYVSDGKIRYRSGPRLATVDFAATLEAVKASYPRAKRD 309 Query: 351 -------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PT 396 P SP G IAF + +M G L +D+ L A P Sbjct: 310 WDSTAPRKALGIVHPTISPDGSRIAFVALGD----LYLMSSKGGTPENLTKDAALDADPA 365 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN------TPAYASDPQWVGFMD 447 WSP G+S+ ++ K G +L+ DL +G++ L + A++ D + + F+D Sbjct: 366 WSPDGQSIAYTSDKGGGL-PQLWIRDLKSGKDRKLTSIDTQPLGAAWSPDGRRIAFLD 422 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 102/316 (32%), Gaps = 69/316 (21%) Query: 188 IIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +D GA + + R+ P +SP+ +AYA D + Sbjct: 154 SGNYDIWTLDVASGAVKQRSSNPRE--DRMPSWSPDGASIAYAGIDGGKT--ALYATSLA 209 Query: 247 DRAPKRIGNFRSMILAPRFSS------------------NGKRAL-------ISVQKDEA 281 D + I AP + +GK + ++ Sbjct: 210 DGKESLLKQVAGRIDAPSYGPAGQLAYVVQDAKGSHLEVDGKTVSGTENVFPFRISWGKS 269 Query: 282 MDIYSVD--LQSNATERLTNTLFINI---------------------------SASYSPD 312 Y D ++ + RL F + SPD Sbjct: 270 GYHYVSDGKIRYRSGPRLATVDFAATLEAVKASYPRAKRDWDSTAPRKALGIVHPTISPD 329 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF- 371 S+I F + LY+M S G + +++D A DP WSP G IA+T G Sbjct: 330 GSRIAFVA----LGDLYLMSSKGGTPENLTKDA-ALDADPAWSPDGQSIAYTSDKGGGLP 384 Query: 372 AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDL-NGRNE 428 + + ++R L D+ WSP GR + F DG G + + +D+ G+ Sbjct: 385 QLWIRDLKSGKDRKLTSIDTQPLGAAWSPDGRRIAFL-DVDGRWGVAGVCVVDVATGKIT 443 Query: 429 TLINTPAYASDPQWVG 444 L ++ P W Sbjct: 444 RLQSSLGQPGSPTWSP 459 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 44/156 (28%) Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDL------------------------------ 360 + G + E + SP G Sbjct: 33 LPPPGGETPIAFDVHEGTSMAVSVSPDGKWLAVDLQGSLWIIPAKGGKARRITDYFNDAR 92 Query: 361 ----------IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRK 409 +A+ + + + ++ DGS R L + + PTWSP GR++ FS Sbjct: 93 QPVWSPDGSRLAYFAYRDGGYDLWTIRPDGSDMRKLTGGAWDDREPTWSPDGRTIAFSSD 152 Query: 410 KDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + G ++++D+ +G + + P P W Sbjct: 153 RSG--NYDIWTLDVASGAVKQRSSNPREDRMPSWSP 186 >gi|221632297|ref|YP_002521518.1| acyl-peptide hydrolase [Thermomicrobium roseum DSM 5159] gi|221156948|gb|ACM06075.1| acylamino-acid-releasing enzyme (ec) (acyl-peptide hydrolase) (aph) [Thermomicrobium roseum DSM 5159] Length = 657 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 129/336 (38%), Gaps = 74/336 (22%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + + + ++++ + DG+ R T + PR+SP+ +++A+ + Sbjct: 31 VVTTMDLEADRYRSAIWLARTDGSPPRRFTSGTHR-DTMPRWSPSGEELAFLSDRTGS-- 87 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK------------------- 278 + R +++ NF + +S +G+R + + Sbjct: 88 DQLWVIPRNGGEARQLTNFVEPVTGFAWSPDGQRIAVVTRAQQAEGKVDPETDVVRLTRL 147 Query: 279 ------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--- 323 + I+ VDL++ ER T+ + + ++SPD SQ+VF S+R Sbjct: 148 RYRFDGQRGFLHERRSHIWVVDLRTGTLERATDGDWDDDWPAWSPDGSQLVFTSNRTEER 207 Query: 324 ---GKEQLYVMQSNGSDQKR----ISQDKEASYFDPVWSPQGDLIA----FTKFSGEKFA 372 +L++++ + + + ++ A++ P WSP G LIA F ++G Sbjct: 208 EWNAASELWLLRFDAAGRTVDLSCVTGGPSAAFGRPSWSPDGRLIAAVGHFESWAGSARH 267 Query: 373 --IGVMKKDGSQERLLVEDSNL----------QAPT-----WSPSGRSLIFSRKKDGDTG 415 + VM DG++ L D + P+ WSP GR + + Sbjct: 268 KRLWVMTPDGNERWNLSADFDATLEDSLLTDAFGPSKPGLLWSPDGRWI--FTQVSEQGA 325 Query: 416 SKLYSIDLNG-------RNETLINTPAYASDPQWVG 444 +LY ++G + + ++D +W+ Sbjct: 326 VRLYRFPVSGGAPECIIGGARRVLDFSLSADGRWIA 361 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 52/268 (19%) Query: 212 QILFEPRFSPNQQKVAYAT----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q+ + + +P+ VAY + + + P+R + PR+S Sbjct: 14 QLASDAQIAPDASAVAYVVTTMDLEADRYRSAIWLARTDGSPPRRFTSGTHRDTMPRWSP 73 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV---------- 317 +G+ + + ++ + +LTN + ++SPD +I Sbjct: 74 SGEELAFLSDRTGSDQLWVIPRNGGEARQLTNFVEPVTGFAWSPDGQRIAVVTRAQQAEG 133 Query: 318 -----------------FESDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 F+ R + ++V+ +R + D + P WSP Sbjct: 134 KVDPETDVVRLTRLRYRFDGQRGFLHERRSHIWVVDLRTGTLERAT-DGDWDDDWPAWSP 192 Query: 357 QGDLIAFTKFSGEK------FAIGVMKKDGSQERL----LVEDSN--LQAPTWSPSGRSL 404 G + FT E+ + +++ D + + + + P+WSP GR + Sbjct: 193 DGSQLVFTSNRTEEREWNAASELWLLRFDAAGRTVDLSCVTGGPSAAFGRPSWSPDGRLI 252 Query: 405 I----FSRKKDGDTGSKLYSIDLNGRNE 428 F +L+ + +G Sbjct: 253 AAVGHFESWAGSARHKRLWVMTPDGNER 280 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 32/248 (12%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R F + ++ + V+D + T D P +SP+ ++ + + E+ Sbjct: 148 RYRFDGQRGFLHERRSHIWVVDLRTGTLERATDG-DWDDDWPAWSPDGSQLVFTSNRTEE 206 Query: 236 ILR---VYLMDTRIDRAPKR-----IGNFRSMILA-PRFSSNGKRAL----ISVQKDEAM 282 L R D A + + S P +S +G+ A Sbjct: 207 REWNAASELWLLRFDAAGRTVDLSCVTGGPSAAFGRPSWSPDGRLIAAVGHFESWAGSAR 266 Query: 283 D--IYSVDLQSNATERLTNTLFINISAS--------------YSPDSSQIVFESDREGKE 326 ++ + N L+ + S +SPD I + +G Sbjct: 267 HKRLWVMTPDGNERWNLSADFDATLEDSLLTDAFGPSKPGLLWSPDGRWIFTQVSEQGAV 326 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI-AFTKFSGEKFAIGVMKKDGSQERL 385 +LY +G + I D S G I A + ++ +M DGS R Sbjct: 327 RLYRFPVSGGAPECII-GGARRVLDFSLSADGRWIAAVIAGPVDPGSVWLMAADGSSSRC 385 Query: 386 LVEDSNLQ 393 L + + Sbjct: 386 LADPNAAW 393 >gi|83814657|ref|YP_446340.1| MdsD protein, putative [Salinibacter ruber DSM 13855] gi|294508278|ref|YP_003572336.1| MdsD protein, [Salinibacter ruber M8] gi|83756051|gb|ABC44164.1| MdsD protein, putative [Salinibacter ruber DSM 13855] gi|294344606|emb|CBH25384.1| MdsD protein, putative [Salinibacter ruber M8] Length = 1092 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 21/209 (10%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 P + + P +G R S Q D +++V + A ERLT + Sbjct: 33 PTSAQDADPFVRHPAVHPDGDRIAFSYQGD----LWTVPVDGGAPERLTIHEAYEGEPRW 88 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 PD +I F SDR G + LYVM + GS R++ W+P G L+ T+ + Sbjct: 89 GPDGDRIAFTSDRFGNDDLYVMDAAGSTPTRLTHHSTGDAIGG-WTPTGKLLFTTRRTYA 147 Query: 370 K----FAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKD--------GDTGS 416 + I + DG R L D+ AP SP GR + F R + G Sbjct: 148 QAEWSDEIYAVDGDGGTPDRRL--DAVGSAPRMSPDGRFIAFERGYNDITKKGYEGPADR 205 Query: 417 KLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ D T + T P W G Sbjct: 206 NVWVYDTENDTYTQVTTYAGNDHTPVWTG 234 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 35/247 (14%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 D + P P+ ++A++ D + V AP+R+ + PR+ Sbjct: 37 QDADPFVRHPAVHPDGDRIAFSYQGDLWTVPVD------GGAPERLTIHEAYEGEPRWGP 90 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----- 322 +G R + + D+Y +D + RLT+ + ++P +++F + R Sbjct: 91 DGDRIAFTSDRFGNDDLYVMDAAGSTPTRLTHHSTGDAIGGWTPTG-KLLFTTRRTYAQA 149 Query: 323 EGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KF 371 E +++Y + +G +R+ A P SP G IAF + + Sbjct: 150 EWSDEIYAVDGDGGTPDRRLDAVGSA----PRMSPDGRFIAFERGYNDITKKGYEGPADR 205 Query: 372 AIGVMKKDG-SQERLLVEDSNLQAPTWS-PSGRSLIFSRKKDGDTG-SKLYSID---LNG 425 + V + + ++ N P W+ P R+L++ ++ G +L D +G Sbjct: 206 NVWVYDTENDTYTQVTTYAGNDHTPVWTGP--RTLLYVSEQSGTYNVHRLALTDQGAADG 263 Query: 426 RNETLIN 432 E + Sbjct: 264 APEAVTT 270 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 42/280 (15%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L + DG LT + EPR+ P+ ++A+ + + +Y+MD Sbjct: 58 SYQGDLWTVPVDGGAPERLTI-HEAYEGEPRWGPDGDRIAFTSDRFGN-DDLYVMD-AAG 114 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALIS----VQKDEAMDIYSVDLQSNAT-ERLTNTLF 302 P R+ + + ++ GK + Q + + +IY+VD RL Sbjct: 115 STPTRLTHHSTGDAIGGWTPTGKLLFTTRRTYAQAEWSDEIYAVDGDGGTPDRRL---DA 171 Query: 303 INISASYSPDSSQIVFESDREGKE------------QLYVMQSNGSDQKRISQDKEASYF 350 + + SPD I F +R + ++V + +++ + Sbjct: 172 VGSAPRMSPDGRFIAF--ERGYNDITKKGYEGPADRNVWVYDTENDTYTQVTTYA-GNDH 228 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKK------DGSQERLLV-EDSNLQAPTWSPSGRS 403 PVW+ + + + + + DG+ E + +D ++++ + S G Sbjct: 229 TPVWT-GPRTLLYVSEQSGTYNVHRLALTDQGAADGAPEAVTTFDDHDVRSLSASQDGSV 287 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETL-INTPAYAS-DPQ 441 + R+ D +Y I+ G L + PA DP Sbjct: 288 VAVQRQTD------IYLIENGGEPRPLDVTVPADYRFDPT 321 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V + + + P + R HT D G +S ++F S+ + Sbjct: 345 VLRGEIFLMQNDPEEPRTTRLTDHTHRDR------GVAWMSDSTLVFSSDRGGNQYDLYR 398 Query: 193 LCVMD-------RDG-ANIRYLTPSRDQILFEPRFSPNQQKVAY-----ATYDDEDILRV 239 L D D + + P++ VA Y +L Sbjct: 399 LESADPEHPGDLYDALQHHVTQLTDTPEDERVLAMDPDRSHVALRRGAMTPYGAGQLLTA 458 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSN-ATERL 297 + D I+ A + + +S +G S + D+Y + + Sbjct: 459 AVADGTIEDAT-VLAEGWNAPTDVAWSPDGDWLAYSQNNLNFNADVYVHAADGSTGPVNV 517 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEA----SYFDP 352 + + +SPD S++ F SDR G + ++ + D ++ +D EA Sbjct: 518 SQHPKSDTEPVWSPDGSKLGFVSDRSGNDADIWFVWLEEEDWEKTKRDWEALEDEDESGA 577 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 S + + I + ER+ P + G + F +D Sbjct: 578 ERSED--------DAPPEVNIDLANIHDRLERVTALPGGEGDPVIAADGDTFYFVGGRDA 629 Query: 413 -----DTGSKLYSIDLNGRNETLIN 432 D+ LY I +G T + Sbjct: 630 GPADYDSEVDLYRIQWDGSERTRVT 654 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 127/375 (33%), Gaps = 56/375 (14%) Query: 112 VTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 G + D + F + I K + + T +D Y +T G Sbjct: 171 AVGSAPRMSPDGRFIAFE----RGYNDITKKGYEGPADRNVWVYDT-ENDTYTQVTTYAG 225 Query: 172 DFNS------RILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEPRFSPN 222 + ++ R L + L + D+ DGA +T D + S + Sbjct: 226 NDHTPVWTGPRTLLYVSEQSGTYNVHRLALTDQGAADGA-PEAVTTFDDHDVRSLSASQD 284 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-------------RFSSNG 269 VA + +YL++ + P + P S +G Sbjct: 285 GSVVA-----VQRQTDIYLIENGGEPRPLDVTVPADYRFDPTEKMQMTDGLRDYAVSPDG 339 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QL 328 ++ + ++ + + D + T RLT+ + ++ D S +VF SDR G + L Sbjct: 340 EQVALVLR--GEIFLMQNDPEEPRTTRLTDHTHRDRGVAWMSD-STLVFSSDRGGNQYDL 396 Query: 329 YVMQSNGSDQKR---------ISQDKEASYFDPVWS--PQGDLIAFTKFS----GEKFAI 373 Y ++S + ++Q + + V + P +A + + G + Sbjct: 397 YRLESADPEHPGDLYDALQHHVTQLTDTPEDERVLAMDPDRSHVALRRGAMTPYGAGQLL 456 Query: 374 GVMKKDGSQERLLVEDSNLQAPT---WSPSGRSLIFSRKK-DGDTGSKLYSIDLNGRNET 429 DG+ E V APT WSP G L +S+ + + +++ D + Sbjct: 457 TAAVADGTIEDATVLAEGWNAPTDVAWSPDGDWLAYSQNNLNFNADVYVHAADGSTGPVN 516 Query: 430 LINTPAYASDPQWVG 444 + P ++P W Sbjct: 517 VSQHPKSDTEPVWSP 531 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 27/227 (11%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA + + + R+ + + S+ + S Sbjct: 334 AVSPDGEQVALVL----RGEIFLMQNDPEEPRTTRLTDHTHRDRGVAWMSD-STLVFSSD 388 Query: 278 KDEA-MDIYSV------------DLQSNATERLTNTLFINISASYSPDSSQIVFES---D 321 + D+Y + D + +LT+T + PD S + Sbjct: 389 RGGNQYDLYRLESADPEHPGDLYDALQHHVTQLTDTPEDERVLAMDPDRSHVALRRGAMT 448 Query: 322 REGKEQLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKK 378 G QL + + + + D WSP GD +A+++ + + V Sbjct: 449 PYGAGQLLTAAVADGTIEDATVLAEGWNAPTDVAWSPDGDWLAYSQNNLNFNADVYVHAA 508 Query: 379 DG--SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 DG + + P WSP G L F + G+ + ++ + L Sbjct: 509 DGSTGPVNVSQHPKSDTEPVWSPDGSKLGFVSDRSGN-DADIWFVWL 554 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 49/200 (24%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ +AY+ + VY+ P + P +S +G + Sbjct: 482 AWSPDGDWLAYSQNNLNFNADVYVHAADGSTGPVNVSQHPKSDTEPVWSPDGSKLGFVSD 541 Query: 278 KDEA-MDIYSVDL-------------------QSNATE---------------------R 296 + DI+ V L +S A R Sbjct: 542 RSGNDADIWFVWLEEEDWEKTKRDWEALEDEDESGAERSEDDAPPEVNIDLANIHDRLER 601 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKE-------QLYVMQSNGSDQKRISQDKEASY 349 +T + D F R+ LY +Q +GS++ R++ ++ Sbjct: 602 VTALPGGEGDPVIAADGDTFYFVGGRDAGPADYDSEVDLYRIQWDGSERTRVT-ERNVGP 660 Query: 350 FDPVWSPQGDLIAFTKFSGE 369 D SP I FT G Sbjct: 661 SDVRLSPDDSQILFTHSGGR 680 >gi|119504089|ref|ZP_01626170.1| hypothetical protein MGP2080_10073 [marine gamma proteobacterium HTCC2080] gi|119460092|gb|EAW41186.1| hypothetical protein MGP2080_10073 [marine gamma proteobacterium HTCC2080] Length = 1101 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 28/201 (13%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G R + D D+YSV L + LT + N ++SPD +I F SDR+G Sbjct: 53 VSPDGTRVIF----DMLGDLYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRDG 108 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKF---AIGVMKKD 379 + ++VM +GS+ +++ +++ + +P WSP IA K SG I + + Sbjct: 109 NDNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVN 168 Query: 380 GSQERLLVEDSN-------LQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSID-- 422 G +V++++ + P +SP G L +S+ + D+ ++++I Sbjct: 169 GGSGIEVVDNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRL 228 Query: 423 --LNGRNETLINTPAYASDPQ 441 G +T+ P A P Sbjct: 229 DLTTGEIDTITGGPGGAVRPT 249 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 32/237 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +V + D+ V L + + P FS +GKR +D Sbjct: 54 SPDGTRVIF--DMLGDLYSVPL----SGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRD 107 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF----ESDRE-GKEQLYVMQS 333 +I+ +D+ + ++T+ N+ + ++SPDS I S R ++++ Sbjct: 108 GNDNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHV 167 Query: 334 NGSDQKRISQDKEA-----SYFDPVWSPQGDLIAFTK-------------FSGEKFAIGV 375 NG + + + S +P +SP GD + +++ +GE FAI Sbjct: 168 NGGSGIEVVDNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRR 227 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + + PT SP G L F K+ D S + DL ET + Sbjct: 228 LDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFV-KRLPDFNSAIVIRDLTSGMETTV 283 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 41/244 (16%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY----ATY 231 RI FVS+ + + VMD DG+N+ +T R L P +SP+ Q +A + Sbjct: 99 RIAFVSDRDGNDN----IWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSG 154 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRS-----MILAPRFSSNGKRALIS----------V 276 +++ + + N I P FS +G S Sbjct: 155 RSIPSGEIWMYHVNGGSGIEVVDNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQY 214 Query: 277 QKDEAMDIY---SVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-REGKEQLYVMQ 332 KD +I+ +DL + + +T + + SPD S++ F + + + Sbjct: 215 NKDSTGEIFAIRRLDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFVKRLPDFNSAIVIRD 274 Query: 333 SNGSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + + + + W P G + F I + + Sbjct: 275 LTSGMETTVYDSLERDEQETAGSHGNTTAFEWLPNGRDLVFWTAG----RIHRLNTETGD 330 Query: 383 ERLL 386 ++L Sbjct: 331 TKIL 334 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 109/263 (41%), Gaps = 38/263 (14%) Query: 199 DGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DGA LT RD + P S + Q+V Y +++D+D+ RV ++ + K + Sbjct: 392 DGAQKPARLTEQRDHFEYWPALSADGQQVVYTSWNDQDLGRVKVVSAK-GGPSKTLVKTP 450 Query: 258 SMILAPRFSSNGKRALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISAS 308 + P+FS +G+ + IY V + ++++ + Sbjct: 451 GHYVQPKFSPDGEMVVYRKTTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSAGH---HPT 507 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +S D S+++F + E +L+ + G D++ I+Q ++ + + SP G+ +AFT Sbjct: 508 FSADGSRVLFTTRGEKGLELHSVDHMGLDKRVIAQGEKVTSY--AVSPDGNWLAFT---- 561 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT------------WSPSGRSLIFSRKKDGDTGS 416 E F + VM + + ++ + + P WS ++L +S G Sbjct: 562 EHFRVYVMPLTITGKPMVAQRAGGAVPVRGVSERAGEFLHWSADSQALHWS------NGP 615 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 L++ +L +L A D Sbjct: 616 ALFTRNLTDAFTSLAPVDQEADD 638 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 85/254 (33%), Gaps = 40/254 (15%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G ++ LT + F+P FSP+ +++A+ + D + +++MD + Sbjct: 67 DLYSVPLSGGSVTALTEGIE-WNFQPTFSPDGKRIAFVSDRDGN-DNIWVMDIDGSNVTQ 124 Query: 252 RIGNFRSMILAPRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERL------TNT 300 + + P +S + + +S + + +I+ + + + T Sbjct: 125 VTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVNGGSGIEVVDNTDGTRA 184 Query: 301 LFINISASYSPDSSQIVFESDREGKE-------------QLYVMQSNGSDQKRISQDKEA 347 ++SPD + + D + + + I+ Sbjct: 185 QKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRLDLTTGEIDTIT-GGPG 243 Query: 348 SYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVED------------SNLQA 394 P SP G +AF K + AI + E + + N A Sbjct: 244 GAVRPTPSPDGSKLAFVKRLPDFNSAIVIRDLTSGMETTVYDSLERDEQETAGSHGNTTA 303 Query: 395 PTWSPSGRSLIFSR 408 W P+GR L+F Sbjct: 304 FEWLPNGRDLVFWT 317 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 88/241 (36%), Gaps = 24/241 (9%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNG 269 ++L + +P + + L + + P R+ R P S++G Sbjct: 361 SKMLRWAQLTPAGNSAIFGSMGH---LYHSTIREDGAQKPARLTEQRDHFEYWPALSADG 417 Query: 270 KRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 ++ + + D+ + + V + ++ L T + +SPD +V+ G Sbjct: 418 QQVVYTSWNDQDLGRVKVVSAKGGPSKTLVKTPGHYVQPKFSPDGEMVVYRKTTGGYLLS 477 Query: 326 ------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +Y++++ G +IS P +S G + FT + + + Sbjct: 478 PLWSVEPGIYLVKTEGGTPIKISSAG----HHPTFSADGSRVLFTTRGEKGLELHSVDHM 533 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G +R++ + + + SP G L F+ ++Y + L + ++ A + Sbjct: 534 GLDKRVIAQGEKVTSYAVSPDGNWLAFTEH------FRVYVMPLTITGKPMVAQRAGGAV 587 Query: 440 P 440 P Sbjct: 588 P 588 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 97/275 (35%), Gaps = 44/275 (16%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF- 265 T + PN + + + + I R+ P ++ + + RF Sbjct: 294 TAGSHGNTTAFEWLPNGRDLVF--WTAGRIHRLNTETGDTKILPIQLSVTKKVRDTVRFP 351 Query: 266 ---SSN---------------GKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINIS 306 + + G A+ D RLT Sbjct: 352 VEVAPDSVDSKMLRWAQLTPAGNSAIFGSMGHLYHSTIREDGA-QKPARLTEQRDHFEYW 410 Query: 307 ASYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + S D Q+V+ S + ++ V+ + G K + + Y P +SP G+++ + K Sbjct: 411 PALSADGQQVVYTSWNDQDLGRVKVVSAKGGPSKTLVK-TPGHYVQPKFSPDGEMVVYRK 469 Query: 366 FSGE---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 +G + I ++K +G + + PT+S G ++F+ + G+ G Sbjct: 470 TTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSAGH--HPTFSADGSRVLFTTR--GEKGL 525 Query: 417 KLYSIDLNGRNETLINTP------AYASDPQWVGF 445 +L+S+D G ++ +I A + D W+ F Sbjct: 526 ELHSVDHMGLDKRVIAQGEKVTSYAVSPDGNWLAF 560 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 15/124 (12%) Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V+ G + + + ++ SP G + F + + G L E Sbjct: 29 VLNPPGPWRDITIETETTTWSFVDVSPDGTRVIFDMLGD----LYSVPLSGGSVTALTEG 84 Query: 390 SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT--------PAYASDP 440 PT+SP G+ + F +DG ++ +D++G N T + + PA++ D Sbjct: 85 IEWNFQPTFSPDGKRIAFVSDRDG--NDNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDS 142 Query: 441 QWVG 444 QW+ Sbjct: 143 QWIA 146 >gi|310817396|ref|YP_003949754.1| amidohydrolase [Stigmatella aurantiaca DW4/3-1] gi|309390468|gb|ADO67927.1| Amidohydrolase [Stigmatella aurantiaca DW4/3-1] Length = 1093 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ S G + + D +Y++ + + LT ++ YSPD + I Sbjct: 55 EGTWMSVDVSPKGDELVFDLLGD----LYTLPIAGGEAKALTTGAAWDMQPRYSPDGASI 110 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FTKFSG-EKF 371 F SDR G + L++M+ +GSD + ++Q+ P WSP + F+ Sbjct: 111 AFTSDRGGGDNLWIMKRDGSDSRPVTQESFRLLNSPTWSPDSQYLVARKHFSSRRSLGAG 170 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + + G + L E N Q P +SP GR L FS+ + D ++Y Sbjct: 171 EMWLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKVFEYNKDPNGQIY 230 Query: 420 SI---DLNGRN-ETLINTPAYASDPQ 441 I +L + E I P + P Sbjct: 231 VIQRLNLETKELEPFITGPGGSVRPT 256 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 30/234 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP ++ + D+L K + + + PR+S +G + + Sbjct: 64 SPKGDELVF------DLLGDLYTLPIAGGEAKALTTGAAWDMQPRYSPDGASIAFTSDRG 117 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +++ + + + +T F + S ++SPDS +V F S R G ++++ Sbjct: 118 GGDNLWIMKRDGSDSRPVTQESFRLLNSPTWSPDSQYLVARKHFSSRRSLGAGEMWLYHR 177 Query: 334 NGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVMKK 378 G + ++++ +P +SP G + F++ +G+ + I + Sbjct: 178 AGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKVFEYNKDPNGQIYVIQRLNL 237 Query: 379 DGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + E + PT SP G+SL F R+ G S L+S DL E + Sbjct: 238 ETKELEPFITGPGGSVRPTPSPDGKSLAFVRRVRGK--SVLFSADLVSGAERPL 289 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 102/295 (34%), Gaps = 40/295 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + S + + + L + G + LT +PR+SP+ +A+ Sbjct: 55 EGTWMSVDVSPKGDELVFDLLGDLYTLPIAGGEAKALTTG-AAWDMQPRYSPDGASIAFT 113 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + + D P +FR + +P +S + + + S ++ A ++ Sbjct: 114 SDRGGGDNLWIMKRDGSDSRPVTQESFRLLN-SPTWSPDSQYLVARKHFSSRRSLGAGEM 172 Query: 285 YSVDLQSNATERLT---NTLFINISASYSPDSSQI----------VFESDREGKEQLYVM 331 + +LT N ++SPD + VFE +++ Q+YV+ Sbjct: 173 WLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKVFEYNKDPNGQIYVI 232 Query: 332 QSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 Q + K + P SP G +AF + K + ER L + Sbjct: 233 QRLNLETKELEPFITGPGGSVRPTPSPDGKSLAFVRRVRGKSVLFSADLVSGAERPLFDG 292 Query: 390 ------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 A W+P +SL+F + KL ID+ + T I Sbjct: 293 LDRDMQETWAIHGVYPAMAWTPDSKSLVFWAQ------GKLNRIDVASKRVTPIP 341 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 60/328 (18%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + S + + + R G LT P+ + EP FSP+ + Sbjct: 147 TWSPDSQYLVARKHFSSRRSLGAGEMWLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRF 206 Query: 226 VAYATYD------------DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + ++ + I + ++ I + P S +GK Sbjct: 207 LYFSQDTTPGKVFEYNKDPNGQIYVIQRLNLETKELEPFITGPGGSVR-PTPSPDGKSLA 265 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDR 322 + ++S DL S A L + L ++ +++PDS +VF + Sbjct: 266 FVRRVRGKSVLFSADLVSGAERPLFDGLDRDMQETWAIHGVYPAMAWTPDSKSLVFWAQ- 324 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP---------------VW---SPQG 358 +L + I ++ A P W SP+G Sbjct: 325 ---GKLNRIDVASKRVTPIPFHVKGTRTLFARVHSPQAQAVVPERFPVKMLRWVQVSPKG 381 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGS 416 D + + + + R L + + P++S G+S++++ D G+ Sbjct: 382 DRVVYQALG----HLYTRELPDGLPRRLTKQTEHFEMHPSFSRDGKSIVYTTWDDDKLGT 437 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 G + + P + +P + Sbjct: 438 VRVVSAGGGEGKVVSAQPGFYLEPAFSP 465 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 43/265 (16%) Query: 218 RFSPNQQKVAYATYDD--------EDILRVYLMDTRIDRAPKRIGNFRSMILAP------ 263 ++P+ + + + + + + R+ + ++ + P Sbjct: 311 AWTPDSKSLVFWAQGKLNRIDVASKRVTPIPFHVKGTRTLFARVHSPQAQAVVPERFPVK 370 Query: 264 --RF---SSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIV 317 R+ S G R + +Y+ +L RLT T + S+S D IV Sbjct: 371 MLRWVQVSPKGDRVVYQA----LGHLYTRELPDGLPRRLTKQTEHFEMHPSFSRDGKSIV 426 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-------- 369 + + + K + S G + ++ + Y +P +SP G I + G Sbjct: 427 YTTWDDDKLGTVRVVSAGGGEGKVVSAQPGFYLEPAFSPDGRSIVYRASGGGYLLPGLYS 486 Query: 370 -KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGR 426 + V+ KDG R L +D + P + + F + G+ +L SI L+G Sbjct: 487 RDPGLYVVGKDGGTPRRLSKDG--EQPHFGAGSDRVYFLAVEGGEKEDKRELRSIGLDGT 544 Query: 427 NETLINTPAYAS------DPQWVGF 445 T A S D +WV F Sbjct: 545 APRTHLTSAEVSTYRVSPDERWVAF 569 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 329 YVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + + G + D E ++ SP+GD + F + + G + + L Sbjct: 37 WNVNAPGFPSTEVPLDVTEGTWMSVDVSPKGDELVFDLLGD----LYTLPIAGGEAKALT 92 Query: 388 EDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + P +SP G S+ F+ + G G L+ + +G + + ++ + P W Sbjct: 93 TGAAWDMQPRYSPDGASIAFTSDRGG--GDNLWIMKRDGSDSRPVTQESFRLLNSPTWSP 150 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 68/244 (27%), Gaps = 63/244 (25%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + ++ V+ G + ++ + EP FSP+ + + Y Sbjct: 425 IVYTTWDDDKLGTVRVVSAGGGEGKVVSA-QPGFYLEPAFSPDGRSIVYR---------- 473 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + +L +S + +Y V RL+ Sbjct: 474 --------------ASGGGYLLPGLYSRD-------------PGLYVVGKDGGTPRRLSK 506 Query: 300 TLFINISASYSPDSSQIVFESDREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + S ++ F + G K +L + +G+ + + A S Sbjct: 507 DG---EQPHFGAGSDRVYFLAVEGGEKEDKRELRSIGLDGTAPR--THLTSAEVSTYRVS 561 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT------------WSPSGRS 403 P +AF E F V + ++ + P WS + Sbjct: 562 PDERWVAF----QEVFNAYVAPLSRGGKTVVASKDSKALPVTRVSRDAGNFLHWSGDSKR 617 Query: 404 LIFS 407 L ++ Sbjct: 618 LYWA 621 >gi|152998566|ref|YP_001364247.1| amidohydrolase [Shewanella baltica OS185] gi|151363184|gb|ABS06184.1| amidohydrolase [Shewanella baltica OS185] Length = 1062 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++GS+ + ++Q+ P WSP + S + + Sbjct: 114 GGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N Q P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTLGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGDIEILIEGTGGAIRPT 252 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + DI ++ + K + + + P +S +GK + Sbjct: 58 SVSPDGKHIVF--DLLGDIYQIPV----TGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 GDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTLGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFNSSLYLLDLKSGETTKL 285 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ KVA+ E + +++L + + + L P++S +GK + + Sbjct: 372 SPDGSKVAF-----EALGKIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWN 426 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + + + ++LT+ + ++SPD +V+ G L Sbjct: 427 DQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTHGGNLTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLV 387 Y + G K+IS D + F D + F E + + DG +R+ Sbjct: 487 YKVDIKGKQNKKISADGYQAQFG----ANADRVFFMNSSEDETPQLSSINLDGFDKRVHY 542 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 543 SSKHATEFRVSPDGEQLAFAER 564 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 75/458 (16%), Positives = 148/458 (32%), Gaps = 87/458 (18%) Query: 37 KVATNSANYSPVSIAFT--------------KFVSIDELGGKVSEVVSKDLQRSDVFNLI 82 ++ P++ F S + G + ++ D Sbjct: 76 QIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIW-IMDAD---------- 124 Query: 83 SQDSFKQKITNPD-SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 S + +T + W S +Q LV + + E L+ V + G Sbjct: 125 --GSNPRTVTQETFRLLNSPAW-SPDSQYLVARKHFTASRSLGAGEVWLYHVAGGE---G 178 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 K P + + + I + D + S+ V+GI K + D Sbjct: 179 VKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTLGKTFHYSKDSVNGIYK--IKRYDTQTG 236 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR---- 257 +I L + P SP+ K+AY DD + +YL+D + K G Sbjct: 237 DIEILIEGTGGAI-RPTPSPDGTKLAYIKRDDFNS-SLYLLDLKSGETTKLFGELDRDMQ 294 Query: 258 ------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASY 309 + ++ + K + I +++ S + ++ + S Sbjct: 295 ETWAIHGVYPTMAWTQDNKDIFFWAKG----KINRLNVASKTLTDIPFSVKTELAVQPSV 350 Query: 310 ---------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA- 347 SPD S++ FE+ ++++ R+++ Sbjct: 351 RFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLTELNNGI 406 Query: 348 SYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 P WS G I FT ++ ++ + V+ G + + L E PT+SP G ++ Sbjct: 407 EELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVV 466 Query: 406 FSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 + + G+ + LY +D+ G+ I+ Y Sbjct: 467 YRKTHGGNLTPRTWSQEPGLYKVDIKGKQNKKISADGY 504 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 103/323 (31%), Gaps = 51/323 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRY 202 Query: 226 VAYATYDD------------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + ++ D I ++ DT+ I I P S +G + Sbjct: 203 IYFSQDDTLGKTFHYSKDSVNGIYKIKRYDTQTGDIEILIEGTGGAIR-PTPSPDGTKLA 261 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY---- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 262 YIKRDDFNSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKG 321 Query: 330 -------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFT 364 + R QD + FD SP G +AF Sbjct: 322 KINRLNVASKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFE 381 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSI 421 I + + L E +N P WS G++++F+ D D G+ Sbjct: 382 ALG----KIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWNDQDQGTVQVIS 437 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 438 AKGGKPKQLTSEPGKYVEPTFSP 460 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G I F I + G + + L + Q P +SP G+ Sbjct: 50 NEGTWMNLSVSPDGKHIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKH 105 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ DGD G ++ +D +G N + + + P W Sbjct: 106 IAFTS--DGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSP 146 >gi|117918478|ref|YP_867670.1| amidohydrolase [Shewanella sp. ANA-3] gi|117610810|gb|ABK46264.1| amidohydrolase [Shewanella sp. ANA-3] Length = 1062 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHLVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDAD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++GS+ + ++ + P WSP + + S + + Sbjct: 114 GGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N + P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGDIEILIEGTGGAIRPT 252 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + DI ++ + K + + + P +S +GK + Sbjct: 58 SVSPDGKHLVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 ADGGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + +++ + E +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYLLDLKSGETTKL 285 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 25/254 (9%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNISVSPDGKHLVFDLLGDIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN-----GKRALISVQKDEAMDI 284 + D + +++MD ++ +P +S + G++ + + A ++ Sbjct: 110 S-DADGGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + I + P SP G +A+ K + ++ ++ + L Sbjct: 229 KRYDTQTGDIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYG 287 Query: 389 D-SNLQAPTWSPSG 401 D TW+ G Sbjct: 288 DLERDMQETWAIHG 301 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 99/343 (28%), Gaps = 91/343 (26%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDR 248 + +MD DG+N R +T ++L P +SP+ + + + V+L Sbjct: 118 IWIMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLYHVAGGE 177 Query: 249 APKRIG--NFRSMILAPRFSSNGKRALISV-------------QKDEAMDIYSVDLQSNA 293 K N + P +S +G+ S + I D Q+ Sbjct: 178 GVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGD 237 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----------SQ 343 E L I + SPD +++ + + + LY++ + ++ + Sbjct: 238 IEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYGDLERDMQETW 297 Query: 344 DKEASYFDPVWSPQGDLIAFTK------------------------------------FS 367 Y W+ I F Sbjct: 298 AIHGVYPTMAWTQDNKDIFFWAKGKINRLNVANKTVTNIPFSVKTQLDVQPSVRFKQDID 357 Query: 368 GEKFAIGV-----MKKDGSQE------------------RLLVEDSNLQA---PTWSPSG 401 + F + + + DGS+ L E N P WS G Sbjct: 358 KDVFDVKMLRMTQVSPDGSKVAFEALGKIWLKTLPDGKMTRLTELGNDIEELYPQWSRDG 417 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++++F+ D D G+ G+ + L +P + Sbjct: 418 KNIVFTTWNDQDQGTVQVISAKGGKAKQLTTETGKYVEPTFSP 460 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G + F I + G + + L + Q P +SP G+ Sbjct: 50 TEGTWMNISVSPDGKHLVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKH 105 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ DG G ++ +D +G N + T + + P W Sbjct: 106 IAFTSDADG--GDNIWIMDADGSNPRTVTTETFRLLNSPAWSP 146 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 43/245 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++ + + + + + I R+ + + + P + + + RF Sbjct: 307 AWTQDNKDIFF--WAKGKINRLNVANKTVTNIPFSVKTQLDVQPSVRFKQDIDKDVFDVK 364 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQ 315 S +G + I+ L RLT L +I +S D Sbjct: 365 MLRMTQVSPDGSKVAFEA----LGKIWLKTLPDGKMTRLT-ELGNDIEELYPQWSRDGKN 419 Query: 316 IVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--- 371 IVF + + + + V+ + G K+++ + Y +P +SP G+L+ + K G Sbjct: 420 IVFTTWNDQDQGTVQVISAKGGKAKQLTTET-GKYVEPTFSPNGELVVYRKTQGGHLTPR 478 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + Q + + + S + F D DT +L SI+L+G Sbjct: 479 TWSQEPGLYKVDLKTKQNKKISAEGYQAQFGASAD--RIFFMNTGDNDT-PQLASINLDG 535 Query: 426 RNETL 430 ++ + Sbjct: 536 FDKRV 540 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 109/284 (38%), Gaps = 44/284 (15%) Query: 169 EKGDFNSRILFVSESVVSGII-----KNSLCV-MDRDGANIRYLTPSRDQILFEPRFSPN 222 +K F+ ++L +++ G + + DG R D P++S + Sbjct: 357 DKDVFDVKMLRMTQVSPDGSKVAFEALGKIWLKTLPDGKMTRLTELGNDIEELYPQWSRD 416 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-- 280 + + + T++D+D V ++ + +A K++ + P FS NG+ + + Sbjct: 417 GKNIVFTTWNDQDQGTVQVISAKGGKA-KQLTTETGKYVEPTFSPNGELVVYRKTQGGHL 475 Query: 281 -------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQ 332 +Y VDL++ +++ A + + +I F + + QL + Sbjct: 476 TPRTWSQEPGLYKVDLKTKQNKKI---SAEGYQAQFGASADRIFFMNTGDNDTPQLASIN 532 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 +G D KR+ + + + SP G+ +AF E+F + V E + + + Sbjct: 533 LDGFD-KRVHYSSKHA-TEFRVSPDGEQLAFA----ERFKVWVTPFAKHGETVEIGPNAS 586 Query: 393 QAP------------TWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P +W+ L ++ G +LY +++ Sbjct: 587 NLPVTQLSVRAGESISWNSKSNQLYWT------LGPELYQANVD 624 >gi|163788034|ref|ZP_02182480.1| WD40-like repeat/amidohydrolase domain protein [Flavobacteriales bacterium ALC-1] gi|159876354|gb|EDP70412.1| WD40-like repeat/amidohydrolase domain protein [Flavobacteriales bacterium ALC-1] Length = 1130 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 19/207 (9%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + ++ S +GK + D D+Y++ + R+T + ++ YSPD Sbjct: 50 TTDKGTWISVDVSPDGKTIMF----DMMGDLYTIPIAGGKATRITEGMPYDVHPRYSPDG 105 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 I+F SD+ G + L+ M +QK++++DK + WSP GD I T+ Sbjct: 106 KSILFISDKSGSDNLWTMDLASKEQKQLTKDKNKYHVSASWSPDGDYIVGTRGRRNIKPF 165 Query: 374 GVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDG-DTGSKL--YSI----DLN 424 V K GS LL + S P +S G+ + FS ++ + ++L Y I + Sbjct: 166 IVHKDGGSGANLLSKQKASKFIDPAFSADGKHIYFSARRGAWNYNAQLPQYQIMSFNRED 225 Query: 425 GRNETLIN------TPAYASDPQWVGF 445 ET+ + TP + D +W+ + Sbjct: 226 AATETVTSRYGSAFTPTLSKDGKWMVY 252 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 18/227 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + D+ + + RI + PR+S +GK L K Sbjct: 62 SPDGKTIMFDMM--GDLYTIPI----AGGKATRITEGMPYDVHPRYSPDGKSILFISDKS 115 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + +++++DL S ++LT ++SAS+SPD IV R + V + GS Sbjct: 116 GSDNLWTMDLASKEQKQLTKDKNKYHVSASWSPDGDYIVGTRGRRNIKPFIVHKDGGSGA 175 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKK-DGSQERLLVED 389 +S+ K + + DP +S G I F+ G ++ I + D + E + Sbjct: 176 NLLSKQKASKFIDPAFSADGKHIYFSARRGAWNYNAQLPQYQIMSFNREDAATETVTSRY 235 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + PT S G+ +++ + + TG L +L E + P Sbjct: 236 GSAFTPTLSKDGKWMVYGSRFEEHTG--LVLRNLKSGEERWLAYPVQ 280 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 98/301 (32%), Gaps = 46/301 (15%) Query: 184 VVSGIIKNSLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 G ++ +DG + L+ + +P FS + + + ++ L Sbjct: 155 GTRGRRNIKPFIVHKDGGSGANLLSKQKASKFIDPAFSADGKHIYFSARRGAWNYNAQLP 214 Query: 243 D------TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 R D A + + + P S +GK + + +E + +L+S Sbjct: 215 QYQIMSFNREDAATETVTSRYGSAFTPTLSKDGKWMVYGSRFEEHTGLVLRNLKSGEERW 274 Query: 297 LTNTLFINISASYSPDS--SQIVFE-------------------SDREGKEQLYVMQSNG 335 L + + S +P + F +D + E + + + Sbjct: 275 LAYPVQRDDQESIAPLGVLPAMAFTPDSKNLIASYGGKLYKIGIADSKATEIPFSVDVDL 334 Query: 336 SDQKRISQDKEASYFDPVW---------SPQGDLIAFTKFSGEKFAIGVMK-KDGSQERL 385 +S + SP G IAFT + + VM G+ +RL Sbjct: 335 DMGPMVSFKYPIDDSPEAFVTQIRGAKPSPDGSQIAFTALN----RLYVMDLPSGTPKRL 390 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN--ETLINTPAYASDPQWV 443 + P WSP G ++F+ K G LY ++ +GR L ++P W Sbjct: 391 TNHNFTEAMPAWSPDGTQIVFTTWK--PDGGHLYKVNASGRGNATQLTKERGIYTNPAWS 448 Query: 444 G 444 Sbjct: 449 Y 449 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 24/178 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + +Y +DL S +RLTN F ++SPD +QIVF + + Sbjct: 363 SPDGSQIAFTA----LNRLYVMDLPSGTPKRLTNHNFTEAMPAWSPDGTQIVFTTWKPDG 418 Query: 326 EQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------- 371 LY + ++G + ++++++ Y +P WS + + IAFTK + + + Sbjct: 419 GHLYKVNASGRGNATQLTKER-GIYTNPAWSYKSNRIAFTKGAAQTYDDAINPFNGRTVE 477 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + DG ++ P ++ + G L SI +G +E Sbjct: 478 ELAWISSDGGNITIIDRAKGRGLPHFTKVNDRIYL-----NHGGKGLISIRWDGTDEK 530 Score = 96.6 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 112/326 (34%), Gaps = 59/326 (18%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D++ + + ILF+S+ S L MD + LT +++ +S Sbjct: 96 DVHPRYSPDG----KSILFISDKSGSDN----LWTMDLASKEQKQLTKDKNKYHVSASWS 147 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKD 279 P+ + ++ +++ + + S + P FS++GK S ++ Sbjct: 148 PDGDYIVGT--RGRRNIKPFIVHKDGGSGANLLSKQKASKFIDPAFSADGKHIYFSARRG 205 Query: 280 --------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 I S + + ATE +T+ + + S D +V+ S E L + Sbjct: 206 AWNYNAQLPQYQIMSFNREDAATETVTSRYGSAFTPTLSKDGKWMVYGSRFEEHTGLVLR 265 Query: 332 QSNGSDQKRISQDKEASYFDP----------VWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 +++ ++ + + ++P + + G+ + IG+ + Sbjct: 266 NLKSGEERWLAYPVQRDDQESIAPLGVLPAMAFTPDSKNLI-ASYGGKLYKIGIADSKAT 324 Query: 382 QERLLVEDSNLQAP--TW--------------------SPSGRSLIFSRKKDGDTGSKLY 419 + V+ P ++ SP G + F+ ++LY Sbjct: 325 EIPFSVDVDLDMGPMVSFKYPIDDSPEAFVTQIRGAKPSPDGSQIAFTA------LNRLY 378 Query: 420 SIDL-NGRNETLINTPAYASDPQWVG 444 +DL +G + L N + P W Sbjct: 379 VMDLPSGTPKRLTNHNFTEAMPAWSP 404 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 97/295 (32%), Gaps = 34/295 (11%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 T +KG + S + + + L + G +T PR+SP+ + Sbjct: 49 FTTDKGTWISVDVSPDGKTIMFDMMGDLYTIPIAGGKATRITEG-MPYDVHPRYSPDGKS 107 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + + + D ++ MD + + ++ +S +G + + + + Sbjct: 108 ILFIS-DKSGSDNLWTMDLASKEQKQLTKDKNKYHVSASWSPDGDYIV-GTRGRRNIKPF 165 Query: 286 SVDLQSNATERLTN----TLFINISASYSPDSSQIVFESDREGK------EQLYVMQSNG 335 V + L + + FI+ ++S D I F + R Q +M N Sbjct: 166 IVHKDGGSGANLLSKQKASKFID--PAFSADGKHIYFSARRGAWNYNAQLPQYQIMSFNR 223 Query: 336 SDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-----ED 389 D + + S F P S G + + E + + +ER L +D Sbjct: 224 EDAATETVTSRYGSAFTPTLSKDGKWMVYGSRFEEHTGLVLRNLKSGEERWLAYPVQRDD 283 Query: 390 SNLQAP-------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 AP ++P ++LI G KLY I + T I Sbjct: 284 QESIAPLGVLPAMAFTPDSKNLI------ASYGGKLYKIGIADSKATEIPFSVDV 332 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 21/171 (12%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + L+ T IS SPD I+F D G LY + G RI++ Sbjct: 39 LPLEPTRKVNFTTDKGTWISVDVSPDGKTIMF--DMMG--DLYTIPIAGGKATRITEGMP 94 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSL 404 P +SP G I F + M +++ L +D N + +WSP G + Sbjct: 95 YDV-HPRYSPDGKSILFISDKSGSDNLWTMDLASKEQKQLTKDKNKYHVSASWSPDGDYI 153 Query: 405 I----------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + F KDG +G+ L L+ + + PA+++D + + F Sbjct: 154 VGTRGRRNIKPFIVHKDGGSGANL----LSKQKASKFIDPAFSADGKHIYF 200 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 89/306 (29%), Gaps = 67/306 (21%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 I D +T +G S S ++ N L VMD + LT + P Sbjct: 346 IDDSPEAFVTQIRGAKPS----PDGSQIAFTALNRLYVMDLPSGTPKRLTN-HNFTEAMP 400 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-- 275 +SP+ ++ + T+ D +Y ++ ++ R + P +S R + Sbjct: 401 AWSPDGTQIVFTTW-KPDGGHLYKVNASGRGNATQLTKERGIYTNPAWSYKSNRIAFTKG 459 Query: 276 ----------------------VQKDEAMDIYSVDLQSNATERLT--------NTLFIN- 304 + D + T N Sbjct: 460 AAQTYDDAINPFNGRTVEELAWISSDGGNITIIDRAKGRGLPHFTKVNDRIYLNHGGKGL 519 Query: 305 ISASYSPDSS-----------QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 IS + D + + SD GK+ M ++ + + + + Sbjct: 520 ISIRW--DGTDEKEHLKLTGIKTYGSSDIFGKDHETAMPTHEEGWRE--NNTGSRPSEIR 575 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL------------QAPTWSPSG 401 SP G A K + + +++ + + L N + P WS + Sbjct: 576 ISPNGTH-ALAKINNDIYSVIIPMIGTTPSINLANPKNAAFPANKLTVIGGEFPEWSSNS 634 Query: 402 RSLIFS 407 + + +S Sbjct: 635 KKVHWS 640 >gi|113968357|ref|YP_732150.1| amidohydrolase [Shewanella sp. MR-4] gi|113883041|gb|ABI37093.1| amidohydrolase [Shewanella sp. MR-4] Length = 1062 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHLVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDAD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++GS+ + ++ + P WSP + S + + Sbjct: 114 GGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N + P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGDIEILIEGTGGAIRPT 252 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + DI ++ + K + + + P +S +GK + Sbjct: 58 SVSPDGKHLVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 ADGGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + +++ + E +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYLLDLKSGETTKL 285 Score = 97.4 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNISVSPDGKHLVFDLLGDIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN-----GKRALISVQKDEAMDI 284 + D + +++MD ++ +P +S + G++ + + A ++ Sbjct: 110 S-DADGGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + I + P SP G +A+ K + ++ ++ + L Sbjct: 229 KRYDTQTGDIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYG 287 Query: 389 DSNLQA----------PT--WSPSGRSLIF 406 D + PT W+ + + F Sbjct: 288 DLDRDMQETWAIHGVYPTMAWTQDNKDIFF 317 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 97/298 (32%), Gaps = 49/298 (16%) Query: 192 SLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT----- 244 + + G LT P+ ++ L EP +SP+ + + ++ D Y D+ Sbjct: 167 EVWLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIY 226 Query: 245 ------RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + + P S +G + + D +Y +DL+S T +L Sbjct: 227 KIKRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLY 286 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLY-----------------------VMQSNG 335 L ++ +++ ++ K+ + Q + Sbjct: 287 GDLDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKGKINRLNVANKTVTNIPFSVKTQLDV 346 Query: 336 SDQKRISQDKEASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 R QD + FD SP G +AF I + + L E Sbjct: 347 QPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEALG----KIWLKTLPDGKMSRLTEL 402 Query: 390 SNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 N P WS G++++F+ D D G+ G+ + L P +P + Sbjct: 403 GNDIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKAKQLSTEPGKYVEPTFSP 460 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 23/203 (11%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQ 277 SP+ KVA+ + L + T D R+ + I L P++S +GK + + Sbjct: 372 SPDGSKVAF------EALGKIWLKTLPDGKMSRLTELGNDIEELYPQWSRDGKNIVFTTW 425 Query: 278 KD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQ 327 D + + + + ++L+ + ++SP+ +V+ + G Sbjct: 426 NDQDQGTVQVISAKGGKAKQLSTEPGKYVEPTFSPNGELVVYRKTQGGHLTPRTWSQEPG 485 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLL 386 LY + K+I+ + + F D I F + + + DG +R+ Sbjct: 486 LYKVDLKTKQNKKITAEGYQAQFGAS----ADRIFFMNTGENDTPQLASINLDGFDKRVH 541 Query: 387 VEDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 542 YSSKHATEFRVSPDGEQLAFAER 564 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G + F I + G + + L + Q P +SP G+ Sbjct: 50 TEGTWMNISVSPDGKHLVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKH 105 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ DG G ++ +D +G N + T + + P W Sbjct: 106 IAFTSDADG--GDNIWIMDADGSNPRTVTTETFRLLNSPAWSP 146 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 22/185 (11%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQ 315 M+ + S +G + I+ L RLT L +I +S D Sbjct: 365 MLRMAQVSPDGSKVAFEA----LGKIWLKTLPDGKMSRLT-ELGNDIEELYPQWSRDGKN 419 Query: 316 IVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--- 371 IVF + + + + V+ + G K++S + Y +P +SP G+L+ + K G Sbjct: 420 IVFTTWNDQDQGTVQVISAKGGKAKQLSTE-PGKYVEPTFSPNGELVVYRKTQGGHLTPR 478 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + Q + + + S + F + DT +L SI+L+G Sbjct: 479 TWSQEPGLYKVDLKTKQNKKITAEGYQAQFGASAD--RIFFMNTGENDT-PQLASINLDG 535 Query: 426 RNETL 430 ++ + Sbjct: 536 FDKRV 540 Score = 42.3 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 68/259 (26%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + + + ++ V+ G + L+ + + EP FSPN + V Y Sbjct: 420 IVFTTWNDQDQGTVQVISAKGGKAKQLSTEPGKYV-EPTFSPNGELVVYRKTQGGH---- 474 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPR-FSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 L PR +S + +Y VDL++ +++T Sbjct: 475 ---------------------LTPRTWS-------------QEPGLYKVDLKTKQNKKIT 500 Query: 299 NTLFINISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 A + + +I F + QL + +G D KR+ + + + SP Sbjct: 501 ---AEGYQAQFGASADRIFFMNTGENDTPQLASINLDGFD-KRVHYSSKHA-TEFRVSPD 555 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------------TWSPSGRSLI 405 G+ +AF E+F + V E + + + P +W+ L Sbjct: 556 GEQLAFA----ERFKVWVTPFAKHGETVEIGPNASNLPVTQLSVRAGESISWNSKSNQLY 611 Query: 406 FSRKKDGDTGSKLYSIDLN 424 ++ G +LY +++ Sbjct: 612 WT------LGPELYQANVD 624 >gi|145638708|ref|ZP_01794317.1| translocation protein TolB precursor [Haemophilus influenzae PittII] gi|145272303|gb|EDK12211.1| translocation protein TolB precursor [Haemophilus influenzae PittII] Length = 143 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 7/147 (4%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 P +SP+ Q++AY +++++ V + K + +F+ AP FS +G R Sbjct: 1 MSPAWSPDGQRLAYVSFENKKSQLV--VQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAF 58 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + +D ++IY + +LT+ N ++SPD + I+F SDR G Q+Y M ++ Sbjct: 59 ASSRDGVLNIYVMGANGGTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDAS 118 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLI 361 G + S G + Sbjct: 119 GGSATVV-----GGRGSAQISADGKTL 140 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD ++ + S K QL V N +K ++ + + P +SP G +AF Sbjct: 2 SPAWSPDGQRLAYVSFENKKSQLVVQDLNSGTRKVVASFQGHN-GAPAFSPDGSRLAFAS 60 Query: 366 FSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I VM +G L N P WSP G S++F+ + G ++Y +D + Sbjct: 61 SRDGVLNIYVMGANGGTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGS--PQVYRMDAS 118 Query: 425 GRNETLINTPAYAS 438 G + T++ A Sbjct: 119 GGSATVVGGRGSAQ 132 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK 409 P WSP G +A+ F +K + V + +++ + AP +SP G L F+ Sbjct: 2 SPAWSPDGQRLAYVSFENKKSQLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASS 61 Query: 410 KDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 +DG +Y + NG T L + ++P W Sbjct: 62 RDG--VLNIYVMGANGGTPTQLTSGAGNNTEPAWSP 95 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R+ +VS K+ L V D + + R + S P FSP+ ++A+A+ D Sbjct: 10 QRLAYVSFE----NKKSQLVVQDLN-SGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDG 64 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +L +Y+M P ++ + P +S +G L + + + +Y +D + Sbjct: 65 -VLNIYVMGAN-GGTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSA 122 Query: 295 ERLTNTLFINISASYSPDSSQI 316 + SA S D + Sbjct: 123 TVV----GGRGSAQISADGKTL 140 Score = 36.9 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 +P WSP G+ L + ++ S+L DLN ++ + PA++ D + F Sbjct: 1 MSPAWSPDGQRLAYVSFENKK--SQLVVQDLNSGTRKVVASFQGHNGAPAFSPDGSRLAF 58 >gi|284036826|ref|YP_003386756.1| Periplasmic component of the Tol biopolymer transport system-like protein [Spirosoma linguale DSM 74] gi|283816119|gb|ADB37957.1| Periplasmic component of the Tol biopolymer transport system-like protein [Spirosoma linguale DSM 74] Length = 512 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 18/215 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + + ++ E + PK+I + +S + K + + ++ Sbjct: 298 SFDGKMLGLSSGVKELGGSIIYTVPVTGGTPKQIT-PKGPSYLHGWSPDKKTLVFTGSRN 356 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 DIYSV RLT ++ Y+PD I F S R G Q+Y M+++GS+Q+ Sbjct: 357 NEYDIYSVPSAGGPEVRLTEAKGLDDGPEYTPDGKYIYFNSSRTGTMQIYRMKADGSEQE 416 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IGVMKKDGSQERLLVE 388 I+ + +F P SP G I F F E+ + ++ GS + ++ Sbjct: 417 AITNGEFHDWF-PHISPDGKWIIFLSFLKEEVKPDDHPFYKHVYLRMLPISGSGQPKVIA 475 Query: 389 -----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + P+WSP + + F ++ S + Sbjct: 476 YIYGGQGTINTPSWSPDSKRVAFISNTAENSVSPI 510 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 20/212 (9%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT--LFIN 304 + I N I AP ++ +GK L + +Y+ +L L N Sbjct: 237 TGDRQVIYNVPKSIQAPNWTPDGKTLLY----NGDGLMYTFNLAKRKPTVLNTGDVKNNN 292 Query: 305 ISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S D + S + G +Y + G K+I+ + WSP + Sbjct: 293 NDHVLSFDGKMLGLSSGVKELGGSIIYTVPVTGGTPKQITPKGPSYLHG--WSPDKKTLV 350 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 FT ++ I + G E L E P ++P G+ + F+ + G ++Y + Sbjct: 351 FTGSRNNEYDIYSVPSAGGPEVRLTEAKGLDDGPEYTPDGKYIYFNSSRTGTM--QIYRM 408 Query: 422 DLNGRNETLINT-------PAYASDPQWVGFM 446 +G + I P + D +W+ F+ Sbjct: 409 KADGSEQEAITNGEFHDWFPHISPDGKWIIFL 440 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 14/99 (14%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--------DDEDILRVYL-- 241 + M DG+ +T + + P SP+ + + + ++ D VYL Sbjct: 404 QIYRMKADGSEQEAITNG-EFHDWFPHISPDGKWIIFLSFLKEEVKPDDHPFYKHVYLRM 462 Query: 242 MDTRIDRAPKRIG---NFRSMILAPRFSSNGKRALISVQ 277 + PK I + I P +S + KR Sbjct: 463 LPISGSGQPKVIAYIYGGQGTINTPSWSPDSKRVAFISN 501 >gi|212632933|ref|YP_002309458.1| amidohydrolase:amidohydrolase-like protein [Shewanella piezotolerans WP3] gi|212554417|gb|ACJ26871.1| Amidohydrolase:Amidohydrolase-like protein [Shewanella piezotolerans WP3] Length = 1064 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S NGK + + D IY + + L + + YSP Sbjct: 44 KIDVTEGTWMNVSVSPNGKHIVFDLLGD----IYQISTDGGEAKPLAKGIAWQMQPVYSP 99 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KF 366 D I F SD +G + +++M+++GS+ + ++ + P WSP G + +T Sbjct: 100 DGKYIAFTSDEDGGDNIWIMEADGSNPRPVTTETFRLLNSPAWSPDGQYLVARKHYTGSR 159 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G + L E N Q P +SP GR + FS+ D+ Sbjct: 160 SLGAGEVWMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDS 219 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 +Y I G E LI A P Sbjct: 220 VKGIYKIKRYDTETGDIEVLIQGTGGAIRPT 250 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 95/236 (40%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN + + + D+L + K + + + P +S +GK + Sbjct: 56 SVSPNGKHIVF------DLLGDIYQISTDGGEAKPLAKGIAWQMQPVYSPDGKYIAFTSD 109 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 +D +I+ ++ + +T F + S ++SPD +V + R G ++++ Sbjct: 110 EDGGDNIWIMEADGSNPRPVTTETFRLLNSPAWSPDGQYLVARKHYTGSRSLGAGEVWMY 169 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + +++ +++ +P +SP G I F++ + + I Sbjct: 170 HVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKIKRY 229 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 + +L++ PT SP G+ L + ++ S LY +DL +G+ E L Sbjct: 230 DTETGDIEVLIQGTGGAIRPTPSPDGKKLAYIKRDG--FQSSLYLLDLKSGKTEKL 283 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 93/254 (36%), Gaps = 25/254 (9%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + + DG + L +P +SP+ + +A+ Sbjct: 49 EGTWMNVSVSPNGKHIVFDLLGDIYQISTDGGEAKPLAKG-IAWQMQPVYSPDGKYIAFT 107 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D++ +++M+ ++ +P +S +G+ + + + A ++ Sbjct: 108 S-DEDGGDNIWIMEADGSNPRPVTTETFRLLNSPAWSPDGQYLVARKHYTGSRSLGAGEV 166 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 167 WMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKI 226 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLV 387 + D + + Q + P SP G +A+ K G + ++ ++ G E+L Sbjct: 227 KRYDTETGDIEVLIQGTGGAIR-PTPSPDGKKLAYIKRDGFQSSLYLLDLKSGKTEKLYG 285 Query: 388 EDSNLQAPTWSPSG 401 E TW+ G Sbjct: 286 ELDRDMQETWAIHG 299 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 101/324 (31%), Gaps = 70/324 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 I F S+ + +M+ DG+N R +T ++L P +SP+ Q + Y Sbjct: 103 YIAFTSDEDGGDN----IWIMEADGSNPRPVTTETFRLLNSPAWSPDGQYLVARKHYTGS 158 Query: 232 DDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQKD 279 V++ K N + + P +S +G+ S KD Sbjct: 159 RSLGAGEVWMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKD 218 Query: 280 ---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 I D ++ E L I + SPD ++ + + LY++ Sbjct: 219 SVKGIYKIKRYDTETGDIEVLIQGTGGAIRPTPSPDGKKLAYIKRDGFQSSLYLLDLKSG 278 Query: 337 DQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +++ + Y W+ D I F K I + + + Sbjct: 279 KTEKLYGELDRDMQETWAIHGVYPTMSWTADNDEIVFWA----KGKINKLNVESKSVAQI 334 Query: 387 -----VEDSNLQAPTW-------------------SPSGRSLIFSRKKDGDTGSKLYSID 422 E + A + SP G+ ++F + K++ Sbjct: 335 PFSVKTERAVQPAVRFQQDLDKDVFDVKMLRMAQVSPDGKKVVF------EALGKIWVKS 388 Query: 423 L-NGRNETLINTPAYASD--PQWV 443 L +G+ L + + PQW Sbjct: 389 LPDGKMSRLTKLDSELRELFPQWS 412 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 106/327 (32%), Gaps = 59/327 (18%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 141 AWSPDGQYLVARKHYTGSRSLGAGEVWMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRY 200 Query: 226 VA------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + Y+ + I ++ DT + + + P S +GK+ Sbjct: 201 IYFSQDATPGKTFHYSKDSVKGIYKIKRYDTETGD-IEVLIQGTGGAIRPTPSPDGKKLA 259 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDR 322 + +Y +DL+S TE+L L ++ S++ D+ +IVF + Sbjct: 260 YIKRDGFQSSLYLLDLKSGKTEKLYGELDRDMQETWAIHGVYPTMSWTADNDEIVFWA-- 317 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDP----------------------VWSPQGDL 360 K ++ + +I + SP G Sbjct: 318 --KGKINKLNVESKSVAQIPFSVKTERAVQPAVRFQQDLDKDVFDVKMLRMAQVSPDGKK 375 Query: 361 IAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSK 417 + F I V DG RL DS L+ P WS G+ ++F+ D G+ Sbjct: 376 VVFEALG----KIWVKSLPDGKMSRLTKLDSELRELFPQWSRDGKKIVFTTWDDQQQGTV 431 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVG 444 + N R + L P +P + Sbjct: 432 SLATVRNKRVKVLTKEPGKYVEPTFSP 458 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 85/200 (42%), Gaps = 19/200 (9%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +KV + I L D ++ R K R L P++S +GK+ + + D Sbjct: 370 SPDGKKVVFEAL--GKIWVKSLPDGKMSRLTKLDSELR--ELFPQWSRDGKKIVFTTWDD 425 Query: 280 EAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQLY 329 + S+ +++ + LT + ++SPD IV+ + G LY Sbjct: 426 QQQGTVSLATVRNKRVKVLTKEPGKYVEPTFSPDGETIVYRKAKGGYITPRTWSQETGLY 485 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + +G + +I+ AS + P + + + F + SGE + + +G ++R+ Sbjct: 486 QVDIDGDNNVKIT----ASGYQPQFGADNERVYFME-SGETPQLSSIGLNGFEKRVHYTS 540 Query: 390 SNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 541 KHATEFRVSPDGKQLAFAER 560 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 89/252 (35%), Gaps = 41/252 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++ + ++ + + I ++ + + + P + R++ A RF Sbjct: 305 SWTADNDEIVF--WAKGKINKLNVESKSVAQIPFSVKTERAVQPAVRFQQDLDKDVFDVK 362 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 S +GK+ + I+ L RLT ++ + +S D +I Sbjct: 363 MLRMAQVSPDGKKVVFEA----LGKIWVKSLPDGKMSRLTKLDSELRELFPQWSRDGKKI 418 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----- 371 VF + + ++ + + + + ++ + Y +P +SP G+ I + K G Sbjct: 419 VFTTWDDQQQGTVSLATVRNKRVKVLTKEPGKYVEPTFSPDGETIVYRKAKGGYITPRTW 478 Query: 372 ----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + + DG + P + + F +L SI LNG Sbjct: 479 SQETGLYQVDIDGDNNVKITASGYQ--PQFGADNERVYFMES---GETPQLSSIGLNGFE 533 Query: 428 ETLINTPAYASD 439 + + T +A++ Sbjct: 534 KRVHYTSKHATE 545 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G I F I + DG + + L + Q P +SP G+ Sbjct: 48 TEGTWMNVSVSPNGKHIVFDLLGD----IYQISTDGGEAKPLAKGIAWQMQPVYSPDGKY 103 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G ++ ++ +G N + T + + P W Sbjct: 104 IAFTSDEDG--GDNIWIMEADGSNPRPVTTETFRLLNSPAWSP 144 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 67/232 (28%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR- 264 + EP FSP+ + + Y + + PR Sbjct: 443 VLTKEPGKYVEPTFSPDGETIVY-------------------------RKAKGGYITPRT 477 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + +Y VD+ + ++T + + + D+ ++ F + Sbjct: 478 WS-------------QETGLYQVDIDGDNNVKITASGY---QPQFGADNERVYFM-ESGE 520 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 QL + NG +++ K A+ F SP G +AF E+F + V E Sbjct: 521 TPQLSSIGLNGFEKRVHYTSKHATEF--RVSPDGKQLAFA----ERFKVFVTPFAKHGET 574 Query: 385 LLVEDSNLQAP------------TWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + P +W+ L ++ G +LY + ++ Sbjct: 575 VQIGPKASNLPVTQLSVRAGESISWNNDNNQLYWT------LGPELYQVKVD 620 Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 25/166 (15%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +++ S + L +D DG N +T S ++P+F + ++V + E Sbjct: 472 YITPRTWS--QETGLYQVDIDGDNNVKITASG----YQPQFGADNERVYFM----ESGET 521 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS---------VQKDEAMDIYSVDL 289 L ++ KR+ R S +GK+ + K Sbjct: 522 PQLSSIGLNGFEKRVHYTSKHATEFRVSPDGKQLAFAERFKVFVTPFAKHGETVQIGPKA 581 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +L+ +IS ++ D++Q+ + +LY ++ + Sbjct: 582 SNLPVTQLSVRAGESIS--WNNDNNQLYWTL----GPELYQVKVDT 621 Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TP 434 Q ++ V + + SP+G+ ++F D +Y I +G + P Sbjct: 42 QVKIDVTEGTWMNVSVSPNGKHIVF------DLLGDIYQISTDGGEAKPLAKGIAWQMQP 95 Query: 435 AYASDPQWVGF 445 Y+ D +++ F Sbjct: 96 VYSPDGKYIAF 106 >gi|254480026|ref|ZP_05093274.1| Amidohydrolase family protein [marine gamma proteobacterium HTCC2148] gi|214039588|gb|EEB80247.1| Amidohydrolase family protein [marine gamma proteobacterium HTCC2148] Length = 1082 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 30/241 (12%) Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 A A D+ V D I ++ S +G + + D IYS Sbjct: 21 AIAQAGDKTGWEVNNPDFSSQPRSASINVTEGTWVSLDVSPDGSTIVFDLLGD----IYS 76 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + ++ +T + +I +SPD SQI F SDR+G + +++ D ++++ + Sbjct: 77 LPIEGGKATAITQGMAWDIQPRFSPDGSQIAFISDRDGGDNVWLQDLGSGDSRQLTFESF 136 Query: 347 ASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGS---QERLLVEDSNL------ 392 +P WSP G IA T S I + DG+ + + +V N Sbjct: 137 RLLNNPSWSPDGQYIAARKHFTTSRSLGTGEIWLYHVDGNRSQKGQQIVARPNETFQKEQ 196 Query: 393 QAPTWSPSGRSLIFSRK--------KDGDTGSKLYSIDL----NGRNETLINTPAYASDP 440 PT+S G S+ FSR D+ +L+ I +G +T+ P A+ P Sbjct: 197 GEPTFSADGNSIYFSRDVSPGNTFVYHQDSNKELFQIRRVNLDDGSIDTVAGGPGGAARP 256 Query: 441 Q 441 Sbjct: 257 A 257 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 98/309 (31%), Gaps = 62/309 (20%) Query: 181 SESVVSGIIKNSLCVMDRDG---ANIRYLTPSRDQILFE----PRFSPNQQKVAYATYDD 233 + + + + DG + + ++ + P FS + + ++ Sbjct: 156 HFTTSRSLGTGEIWLYHVDGNRSQKGQQIVARPNETFQKEQGEPTFSADGNSIYFSRDVS 215 Query: 234 EDILRVYLMDTRIDRAPKR-----------IGNFRSMILAPRFSSNGKRALISVQKDEAM 282 VY D+ + R + P S +GK+ + Sbjct: 216 PGNTFVYHQDSNKELFQIRRVNLDDGSIDTVAGGPGGAARPAPSPDGKQLAYVKRVRARS 275 Query: 283 DIYSVDLQSNATERLTNTLFINI-----------SASYSPDSSQIVFESDREGKEQLYVM 331 ++ +DL + + + L ++ + ++PDS IVF + +++ + Sbjct: 276 RLFVMDLATGEERMIFDALDQDMQEIWAVHGVYPNMDWTPDSQNIVFWAQ----GKIWKI 331 Query: 332 QSNGSDQKRISQD--KEASYFDP--------------------VWSPQGDLIAFTKFSGE 369 +NG I + ++ P SP G + F Sbjct: 332 NANGEGLSEIPFSVVDKREFYPPIQFAVDVAPDEFDTRMVRFASRSPDGSAVVFESLG-- 389 Query: 370 KFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + + D +RL + + +P WSP +SL F R D + + + ++ NG Sbjct: 390 --ELYIKHSDKDAKRLTSDKNEGFDYSPVWSPDSKSLYFMRWND-QSLTSIRRVNANGGK 446 Query: 428 ETLINTPAY 436 + P Sbjct: 447 SKRLTVPTG 455 Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 103/330 (31%), Gaps = 74/330 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YAT 230 S+I F+S+ + + D + R LT ++L P +SP+ Q +A + T Sbjct: 104 SQIAFISDRDGGDN----VWLQDLGSGDSRQLTFESFRLLNNPSWSPDGQYIAARKHFTT 159 Query: 231 YDDEDILRVYLMDTRIDRAP-------KRIGNFRSMILAPRFSSNGKRALISVQKDEA-- 281 ++L +R+ + F+ P FS++G S Sbjct: 160 SRSLGTGEIWLYHVDGNRSQKGQQIVARPNETFQKEQGEPTFSADGNSIYFSRDVSPGNT 219 Query: 282 -----------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 I V+L + + + + SPD Q+ + + +L+V Sbjct: 220 FVYHQDSNKELFQIRRVNLDDGSIDTVAGGPGGAARPAPSPDGKQLAYVKRVRARSRLFV 279 Query: 331 MQSNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 M +++ I Y + W+P I F I + +G Sbjct: 280 MDLATGEERMIFDALDQDMQEIWAVHGVYPNMDWTPDSQNIVFWAQG----KIWKINANG 335 Query: 381 SQER---------------------LLVEDSNLQAPTW---SPSGRSLIFSRKKDGDTGS 416 + ++ + + + SP G +++F ++ Sbjct: 336 EGLSEIPFSVVDKREFYPPIQFAVDVAPDEFDTRMVRFASRSPDGSAVVF------ESLG 389 Query: 417 KLYSIDLNGRNETLIN--TPAYASDPQWVG 444 +LY + + L + + P W Sbjct: 390 ELYIKHSDKDAKRLTSDKNEGFDYSPVWSP 419 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 111/334 (33%), Gaps = 51/334 (15%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPA---SWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 E L+ V + G++ + P + T S D D + FV Sbjct: 167 EIWLYHVDGNRSQKGQQIVARPNETFQKEQGEPTFSADGNSIYFSR--DVSPGNTFVYHQ 224 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + + V DG+ P SP+ +++AY R+++MD Sbjct: 225 DSNKELFQIRRVNLDDGS--IDTVAGGPGGAARPAPSPDGKQLAYVK-RVRARSRLFVMD 281 Query: 244 TRIDRAP----------KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + I + ++ + + + Q I+ ++ Sbjct: 282 LATGEERMIFDALDQDMQEIWAVHGVYPNMDWTPDSQNIVFWAQG----KIWKINANGEG 337 Query: 294 TERLTNT------------LFINISA-----------SYSPDSSQIVFESDREGKEQLYV 330 + + ++++ S SPD S +VFES +LY+ Sbjct: 338 LSEIPFSVVDKREFYPPIQFAVDVAPDEFDTRMVRFASRSPDGSAVVFES----LGELYI 393 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLV-E 388 S+ ++ S E + PVWSP + F +++ + +I + +G + + L Sbjct: 394 KHSDKDAKRLTSDKNEGFDYSPVWSPDSKSLYFMRWNDQSLTSIRRVNANGGKSKRLTVP 453 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + SP G L+F + L+++D Sbjct: 454 TGQYTELSVSPKGDQLLFRKIAASALLGSLHTVD 487 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 94/291 (32%), Gaps = 53/291 (18%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGII-----KNSLCVMDRDGANIRYLTPSRDQ 212 I ++ +F++R++ + G L + D R + + Sbjct: 351 FYPPIQFAVDVAPDEFDTRMVRFASRSPDGSAVVFESLGELYIKHSDKDAKRLTSDKNEG 410 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + P +SP+ + + + ++D+ + + ++ KR+ S G + Sbjct: 411 FDYSPVWSPDSKSLYFMRWNDQSLTSIRRVNAN-GGKSKRLTVPTGQYTELSVSPKGDQL 469 Query: 273 LI----SVQKDEAMD-----IYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDR 322 L + ++ IY D+ +T+ + + D ++ +R Sbjct: 470 LFRKIAASALLGSLHTVDSGIYLYDISD----EITHFVSKRGTYPHFGADDR--IYSQER 523 Query: 323 ----------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 L M NG+D + +Q + A+ + SP G IAF E Sbjct: 524 AETAIGRGSKTASTLLLSMTPNGNDVRIFAQSERATRIER--SPTGSHIAFL----EGHH 577 Query: 373 IGVMKK--DGSQERLLVEDSN-LQAPT------------WSPSGRSLIFSR 408 + + G L + PT WS +G S+ +S Sbjct: 578 VYLQPAINTGKTLSLTTDGGLGTTFPTKKLSAVGGTYMHWSANGDSISWST 628 >gi|32474079|ref|NP_867073.1| TolB protein [Rhodopirellula baltica SH 1] gi|32444616|emb|CAD74618.1| probable TolB protein [Rhodopirellula baltica SH 1] Length = 1074 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 54/315 (17%) Query: 163 YQSITGEKGDFN---SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 ++ +G F+ +R++F SE S + V D + +I+ ++P + Sbjct: 79 FEGRRAGEGYFSADGTRMVFQSERDPSNPF-YQIYVSDLETGDIQRVSPGFGKTTCG-WI 136 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 PN +KV +A+ T D +R+ F ++G+ S D Sbjct: 137 HPNGEKVLFAS-------------THADANSERLQKEEL-----DFRASGESRRYSWDYD 178 Query: 280 EAMDIYSVDLQ------SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ------ 327 ++Y+ +L + LT+ + + SYSPD QIVF S+R + Sbjct: 179 PNYELYAAELDQIEPGSTKGLTALTSAMGYDAEGSYSPDGKQIVFASNRAAYSRELTERE 238 Query: 328 -------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFA 372 LY+M ++GS+ KR++ + P +SP G I + +F +G Sbjct: 239 REQFERDPAFMIDLYIMNADGSNVKRLTNE-PGYDGGPFFSPDGQRICWRRFAPNGATAE 297 Query: 373 IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--T 429 I MK DGS + L E ++ AP + PSG L+F+ K G +LY + +G E Sbjct: 298 IFTMKTDGSDVQRLTEINAMSWAPFYHPSGEFLVFTTNKHGFANFELYLVRADGEGEPVR 357 Query: 430 LINTPAYASDPQWVG 444 L T + P ++ Sbjct: 358 LTTTEGFDGLPVFLP 372 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 23/186 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +M+ DG+N++ LT P FSP+ Q++ + + + Sbjct: 251 DLYIMNADGSNVKRLTN-EPGYDGGPFFSPDGQRICWRRFAPNGATAEIFTMKTDGSDVQ 309 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE--AMDIYSVDLQS-NATERLTNTLFINISAS 308 R+ +M AP + +G+ + + K ++Y V RLT T + Sbjct: 310 RLTEINAMSWAPFYHPSGEFLVFTTNKHGFANFELYLVRADGEGEPVRLTTTEGFDGLPV 369 Query: 309 YSPDSSQIVFESDR-----------EGKE-----QLYVMQSNGSDQKR---ISQDKEASY 349 + P+ +Q+ + + R +G+ Q+Y+ + +R +++ + + Sbjct: 370 FLPNGNQLSWTTTRVVDSDGKIVMEDGEPKKSTSQIYLADFDVETARRRLGLTESSDNNS 429 Query: 350 FDPVWS 355 D S Sbjct: 430 TDEDAS 435 >gi|56459714|ref|YP_154995.1| hypothetical protein IL0605 [Idiomarina loihiensis L2TR] gi|56178724|gb|AAV81446.1| Uncharacterized conserved secreted protein [Idiomarina loihiensis L2TR] Length = 1058 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 25/234 (10%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + E + D + + I + S +G+ + + D IY + Sbjct: 19 VSMAQEQTQGWDVSDPQGEFKTIDISVNSGTWMNVDVSPDGEYIVFDLLGD----IYRMP 74 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 E+L + ++ YSP+ I F SD+ G + ++VM ++G++ + ++++ Sbjct: 75 FGGGEAEKLIGGIAWHMQPVYSPNGRYIAFTSDQGGGDNIWVMDADGNNVRAVTEETFRL 134 Query: 349 YFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSP 399 P WSP + + S + + + G L E N Q P +SP Sbjct: 135 LNSPAWSPDSEFLVARKHFTASRSLGAGEVWMYHRSGGSGVQLTERPNDQKDLGEPAFSP 194 Query: 400 SGRSLIFSRK--------KDGDTGSKLYSIDL----NGRNETLINTPAYASDPQ 441 G+ + FS+ D+ +Y I G ETLI+ A P Sbjct: 195 DGKYIYFSQDDTPGKTFHYSKDSLEGIYDIKRFERETGEIETLISGAGGAIRPT 248 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 96/296 (32%), Gaps = 42/296 (14%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 G + + + + + + M G L +P +SPN + +A+ Sbjct: 47 SGTWMNVDVSPDGEYIVFDLLGDIYRMPFGGGEAEKLI-GGIAWHMQPVYSPNGRYIAFT 105 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D +++MD + ++ +P +S + + + + + A ++ Sbjct: 106 S-DQGGGDNIWVMDADGNNVRAVTEETFRLLNSPAWSPDSEFLVARKHFTASRSLGAGEV 164 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDR-------------EGKEQL 328 + + +LT ++SPD I F D EG + Sbjct: 165 WMYHRSGGSGVQLTERPNDQKDLGEPAFSPDGKYIYFSQDDTPGKTFHYSKDSLEGIYDI 224 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV- 387 + + + + P SP G +A+ K + V+ + + + Sbjct: 225 KRFERETGEIETLIS-GAGGAIRPTPSPDGRYLAYIKREDFDSVLYVLDLKTGEHKRVYG 283 Query: 388 -------EDSNLQA--PT--WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 E + PT W+P + L+F G + ++++ + +I Sbjct: 284 KMERDMQETWAIHGVYPTMDWTPDSKQLVFWA------GGHIQKLNIDDGSARIIP 333 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 109/301 (36%), Gaps = 57/301 (18%) Query: 192 SLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT----- 244 + + R G + LT P+ + L EP FSP+ + + ++ D Y D+ Sbjct: 163 EVWMYHRSGGSGVQLTERPNDQKDLGEPAFSPDGKYIYFSQDDTPGKTFHYSKDSLEGIY 222 Query: 245 ------RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 R + + + + P S +G+ ++D +Y +DL++ +R+ Sbjct: 223 DIKRFERETGEIETLISGAGGAIRPTPSPDGRYLAYIKREDFDSVLYVLDLKTGEHKRVY 282 Query: 299 NTLFINISASYS-----------PDSSQIVFESDREGKEQLYVMQSNGSDQKRI------ 341 + ++ +++ PDS Q+VF + + + + + I Sbjct: 283 GKMERDMQETWAIHGVYPTMDWTPDSKQLVFWA----GGHIQKLNIDDGSARIIPFKVET 338 Query: 342 ----------SQDKEASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 Q+ EA FD SPQGD + + ++ + + Sbjct: 339 EKKVQHALGFKQNVEADQFDVKMLRMAQVSPQGDAVIYEALG----SLYQRSLPDGEPQR 394 Query: 386 LVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWV 443 L + + P +S G ++F R D + D++ +E ++NT +P + Sbjct: 395 LTNSEDFELYPQYSRDGEKVVFVRWNDEAQAKVIVR-DISSGDEQVLNTGQGNFVEPTFS 453 Query: 444 G 444 Sbjct: 454 P 454 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 28/232 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP V Y + L + D P+R+ N L P++S +G++ + D Sbjct: 368 SPQGDAVIY------EALGSLYQRSLPDGEPQRLTNSEDFELYPQYSRDGEKVVFVRWND 421 Query: 280 EA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----------KEQL 328 EA + D+ S + L + ++SP+ +V+ R G Sbjct: 422 EAQAKVIVRDISSGDEQVLNTGQGNFVEPTFSPNGKHVVYRKVRGGYLISDKFGLENGIY 481 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 V S ++ ++I++ P + + D + + G+K + + ++R L + Sbjct: 482 RVAVSANAEPEQIAESG----HLPQYGARNDRV-YLMTPGDKPTLSAIDLRTLEQRDLYQ 536 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 SP G+ L F+ + K++ L R + P P Sbjct: 537 SELATEFRVSPDGKQLAFAER------FKVFVTPLVERGSVINVGPGDKQMP 582 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 37/235 (15%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN----------FRS 258 S P SP+ + +AY +D D + +Y++D + + G Sbjct: 239 SGAGGAIRPTPSPDGRYLAYIKREDFDSV-LYVLDLKTGEHKRVYGKMERDMQETWAIHG 297 Query: 259 MILAPRFSSNGKRALISV--------QKDEAMDIYSVDLQSNATERLTNTLFINISA--- 307 + ++ + K+ + D + I +++ + N+ A Sbjct: 298 VYPTMDWTPDSKQLVFWAGGHIQKLNIDDGSARIIPFKVETEKKVQHALGFKQNVEADQF 357 Query: 308 --------SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SP +++E+ LY + +R++ + E P +S G+ Sbjct: 358 DVKMLRMAQVSPQGDAVIYEA----LGSLYQRSLPDGEPQRLT-NSEDFELYPQYSRDGE 412 Query: 360 LIAFTKFSGE-KFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDG 412 + F +++ E + + V E++L N PT+SP+G+ +++ + + G Sbjct: 413 KVVFVRWNDEAQAKVIVRDISSGDEQVLNTGQGNFVEPTFSPNGKHVVYRKVRGG 467 Score = 41.5 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 93/269 (34%), Gaps = 43/269 (15%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR- 238 V + + + V D + + L + + EP FSPN + V Y ++ Sbjct: 414 VVFVRWNDEAQAKVIVRDISSGDEQVLNTGQGNFV-EPTFSPNGKHVVYRKVRGGYLISD 472 Query: 239 -------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +Y + + P++I + P++ + R + + + + ++DL++ Sbjct: 473 KFGLENGIYRVAVSANAEPEQIAESGHL---PQYGARNDRVYL-MTPGDKPTLSAIDLRT 528 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS----------NGSDQKRI 341 L + + SPD Q+ F + +++V G Q + Sbjct: 529 LEQRDLYQSE-LATEFRVSPDGKQLAFA----ERFKVFVTPLVERGSVINVGPGDKQMPV 583 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM---KKDGSQERLLVEDSN---LQAP 395 Q + + W+ D + +T E + V D + L VE+ + Sbjct: 584 HQLSVRAGENLSWTANSDQLYWT-LGPELYHTSVAEAFNADTESDTLKVENGQNIGFEHD 642 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P ++ F G ++ +++ + Sbjct: 643 AMIPD-TTVAFV-------GGQVITMNGD 663 >gi|268316601|ref|YP_003290320.1| WD40 domain-containing protein [Rhodothermus marinus DSM 4252] gi|262334135|gb|ACY47932.1| WD40 domain-containing protein [Rhodothermus marinus DSM 4252] Length = 379 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 111/299 (37%), Gaps = 33/299 (11%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 ++ + W I D I+ + N + +G + + DG Sbjct: 66 RYLVFQSDWAAINPQGCDQIFLMRADGRPLANGERY---RLLSTGKGRTTCAYFLPDG-R 121 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + Y + P + + + YD D +Y+ DT P+ + Sbjct: 122 VLYASTHAAGPECPPVQRTAEGRYVWPVYDTYD---IYITDT-TGAEPELLIGGPGYDAE 177 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 S +G+ + + + ++++ DLQ+ +LT+ L + A +SPD S+IV+ + R Sbjct: 178 ATVSPDGRYVVFTSSRTGDLELWRYDLQTGELLQLTHELGYDGGAFFSPDGSKIVWRASR 237 Query: 323 EGK-------------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 L+V ++GS+ +R+ Q S + P + P G+ I F Sbjct: 238 PTGEAAERYRRLLAQGLVEPTDMDLFVADADGSNPRRVIQL-PGSQWAPYFHPDGERIIF 296 Query: 364 TKFS----GEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK 417 G F + +++ DG+ + A P +S G+ L+F+ ++ Sbjct: 297 ASNHHTEGGRLFDLFLIRLDGTGLEQITHSGTFDAFPMFSRDGKRLVFASNRNARGEPS 355 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 55/294 (18%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYAT----YDDEDILRVYLMD-----TRIDRAPKR 252 NIR LT + +S + + + + + + + +++LM + Sbjct: 46 NIRQLTFGGNNAEAY--WSYDDRYLVFQSDWAAINPQGCDQIFLMRADGRPLANGERYRL 103 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDE--------------------AMDIYSVDLQSN 292 + + F +G+ S DIY D Sbjct: 104 LSTGKGRTTCAYFLPDGRVLYASTHAAGPECPPVQRTAEGRYVWPVYDTYDIYITDTTGA 163 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 E L + A+ SPD +VF S R G +L+ + +++ + Sbjct: 164 EPELLIGGPGYDAEATVSPDGRYVVFTSSRTGDLELWRYDLQTGELLQLTHEL-GYDGGA 222 Query: 353 VWSPQGDLIAFTKFSGEK-------------------FAIGVMKKDGSQERLLVE-DSNL 392 +SP G I + + V DGS R +++ + Sbjct: 223 FFSPDGSKIVWRASRPTGEAAERYRRLLAQGLVEPTDMDLFVADADGSNPRRVIQLPGSQ 282 Query: 393 QAPTWSPSGRSLIFSRKKD--GDTGSKLYSIDLNGRN-ETLINTPAYASDPQWV 443 AP + P G +IF+ G L+ I L+G E + ++ + + P + Sbjct: 283 WAPYFHPDGERIIFASNHHTEGGRLFDLFLIRLDGTGLEQITHSGTFDAFPMFS 336 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 74/286 (25%), Gaps = 58/286 (20%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L P +PN A A D LR + R F +S + + Sbjct: 11 SLLIVPACTPNSSPPAEAYDPASDSLR---FPGEVHLRNIRQLTFGGNNAEAYWSYDDRY 67 Query: 272 ALI-----SVQKDEAMDIYSVDLQSNAT------ERLTNTLFINISASYSPDSSQIVFES 320 + ++ I+ + L+ A + PD + + Sbjct: 68 LVFQSDWAAINPQGCDQIFLMRADGRPLANGERYRLLSTGKGRTTCAYFLPDGRVLYAST 127 Query: 321 DREG--------------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 G +Y+ + G++ + + + SP G Sbjct: 128 HAAGPECPPVQRTAEGRYVWPVYDTYDIYITDTTGAEPELLI-GGPGYDAEATVSPDGRY 186 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD-------- 411 + FT + + L + +SP G +++ + Sbjct: 187 VVFTSSRTGDLELWRYDLQTGELLQLTHELGYDGGAFFSPDGSKIVWRASRPTGEAAERY 246 Query: 412 ---------GDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVGFMD 447 T L+ D +G N +I P QW + Sbjct: 247 RRLLAQGLVEPTDMDLFVADADGSNPRRVIQLPGS----QWAPYFH 288 >gi|119773170|ref|YP_925910.1| amidohydrolase [Shewanella amazonensis SB2B] gi|119765670|gb|ABL98240.1| conserved hypothetical amidohydrolase [Shewanella amazonensis SB2B] Length = 1062 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + E L + + + YSPD I F SD++ Sbjct: 56 SLSPDGKYIVFDLLGD----IYRIPAKGGEAEVLASGIAWQMQPVYSPDGKYIAFTSDQD 111 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + L+VM ++G + + ++++ P WSP + S + + Sbjct: 112 GGDNLWVMDADGKNPRAVTKETFRLINSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHI 171 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N Q P +SP GR + FS+ D+ + +Y I Sbjct: 172 SGGEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVAGIYKIKRYDT 231 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 232 QTGEIEVLIEGTGGAIRPT 250 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 97/235 (41%), Gaps = 33/235 (14%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + DI R+ + + + + + P +S +GK + +D Sbjct: 58 SPDGKYIVFDLL--GDIYRI----PAKGGEAEVLASGIAWQMQPVYSPDGKYIAFTSDQD 111 Query: 280 EAMDIYSVDLQSNATERLTNTLF--INISASYSPDSSQIV----FESDRE-GKEQLYVMQ 332 +++ +D +T F IN S ++SPDS +V F + R G ++++ Sbjct: 112 GGDNLWVMDADGKNPRAVTKETFRLIN-SPAWSPDSQYLVGRKHFTASRSLGAGEVWLYH 170 Query: 333 SNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMK 377 +G + ++++ +P +SP G I F++ + + I Sbjct: 171 ISGGEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVAGIYKIKRYD 230 Query: 378 KDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 + +L+E PT SP G+ L F ++ + LYS+DL +G E L Sbjct: 231 TQTGEIEVLIEGTGGAIRPTPSPDGKKLAFIKRDGFQST--LYSLDLASGAKEKL 283 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 49/298 (16%) Query: 192 SLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT----- 244 + + G LT P+ + L EP +SP+ + + ++ Y D+ Sbjct: 165 EVWLYHISGGEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVAGIY 224 Query: 245 ------RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + + P S +GK+ + +YS+DL S A E+L Sbjct: 225 KIKRYDTQTGEIEVLIEGTGGAIRPTPSPDGKKLAFIKRDGFQSTLYSLDLASGAKEKLY 284 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLY-----------------------VMQSNG 335 L ++ +++ D+ + L+ Q + Sbjct: 285 GELDRDMQETWAIHGVYPTMAWDKSSNDILFWAKGKIQRLNVSSKKVTEVPFHVKTQLDV 344 Query: 336 SDQKRISQDKEASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-- 387 R +Q+ + FD SP G + + + + + L Sbjct: 345 QPSVRYTQNLDHDNFDVKMLRMAQVSPDGKHVVYEALG----KLWLKSLPEGKVTRLTKL 400 Query: 388 -EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + + PTWS G+ L F+ D D GS L N + T+ P +P + Sbjct: 401 DDGISELYPTWSRDGKQLAFTTWTDKDQGSVLVINLGNRKTTTITQVPGKYVEPVFSP 458 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 79/218 (36%), Gaps = 24/218 (11%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + S +P +SP+ + +A+ + D + +++MD +I +P + Sbjct: 84 VLASGIAWQMQPVYSPDGKYIAFTS-DQDGGDNLWVMDADGKNPRAVTKETFRLINSPAW 142 Query: 266 SSN-----GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIV 317 S + G++ + + A +++ + +LT +YSPD I Sbjct: 143 SPDSQYLVGRKHFTASRSLGAGEVWLYHISGGEGVQLTERPNDQKDLGEPAYSPDGRYIY 202 Query: 318 FESDRE-------------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 F D G ++ + + + + + P SP G +AF Sbjct: 203 FSQDATPGKTFHYSKDSVAGIYKIKRYDTQTGEIEVLI-EGTGGAIRPTPSPDGKKLAFI 261 Query: 365 KFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSG 401 K G + + + G++E+L E TW+ G Sbjct: 262 KRDGFQSTLYSLDLASGAKEKLYGELDRDMQETWAIHG 299 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 117/381 (30%), Gaps = 76/381 (19%) Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + + V +D ++G + A ++ I + Sbjct: 55 LSLSPDGKYIV----FD------LLGDIYRIPAKGGE--AEVLASGIAWQMQPVYSPDGK 102 Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 I F S+ L VMD DG N R +T +++ P +SP+ Q + + Sbjct: 103 YIAFTSDQDGGDN----LWVMDADGKNPRAVTKETFRLINSPAWSPDSQYLVGRKHFTAS 158 Query: 232 DDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQKD 279 V+L + N + + P +S +G+ S KD Sbjct: 159 RSLGAGEVWLYHISGGEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKD 218 Query: 280 ---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 I D Q+ E L I + SPD ++ F + LY + Sbjct: 219 SVAGIYKIKRYDTQTGEIEVLIEGTGGAIRPTPSPDGKKLAFIKRDGFQSTLYSLDLASG 278 Query: 337 DQKRISQDKEASYFDPVWSPQGDL--IAFTKFSGEKFAIG---VMKKDGSQERLL----- 386 ++++ + W+ G +A+ K S + + + + S +++ Sbjct: 279 AKEKL-YGELDRDMQETWAIHGVYPTMAWDKSSNDILFWAKGKIQRLNVSSKKVTEVPFH 337 Query: 387 VEDSNLQAPT---------------------WSPSGRSLIFSRKKDGDTGSKLYSIDL-N 424 V+ P+ SP G+ +++ + KL+ L Sbjct: 338 VKTQLDVQPSVRYTQNLDHDNFDVKMLRMAQVSPDGKHVVY------EALGKLWLKSLPE 391 Query: 425 GRNETLINTPAYASD--PQWV 443 G+ L S+ P W Sbjct: 392 GKVTRLTKLDDGISELYPTWS 412 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 21/201 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ + V Y E + +++L + + + L P +S +GK+ + Sbjct: 370 SPDGKHVVY-----EALGKLWLKSLPEGKVTRLTKLDDGISELYPTWSRDGKQLAFTTWT 424 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + ++L + T +T + +SP +V+ G + Sbjct: 425 DKDQGSVLVINLGNRKTTTITQVPGKYVEPVFSPTGELLVYRKASGGYITPTTWSNDPGI 484 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + RIS F P + + + F + SGE + DG ++R Sbjct: 485 YKASLKTKENTRISALG----FQPQFGADSNRVYFME-SGETPQFSSINLDGFEKRTHYT 539 Query: 389 DSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 540 SKHATEFRISPDGEQLAFAER 560 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G I F I + G + +L Q P +SP G+ Sbjct: 48 NEGTWMNLSLSPDGKYIVFDLLGD----IYRIPAKGGEAEVLASGIAWQMQPVYSPDGKY 103 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G L+ +D +G+N + + + P W Sbjct: 104 IAFTSDQDG--GDNLWVMDADGKNPRAVTKETFRLINSPAWSP 144 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 22/193 (11%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 M+ + S +GK + ++ L RLT + + ++S D Q+ Sbjct: 363 MLRMAQVSPDGKHVVYEA----LGKLWLKSLPEGKVTRLTKLDDGISELYPTWSRDGKQL 418 Query: 317 VFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF---- 371 F + + + + V+ I+Q Y +PV+SP G+L+ + K SG Sbjct: 419 AFTTWTDKDQGSVLVINLGNRKTTTITQV-PGKYVEPVFSPTGELLVYRKASGGYITPTT 477 Query: 372 -----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + + P + + F + SI+L+G Sbjct: 478 WSNDPGIYKASLKTKENTRISALGFQ--PQFGADSNRVYFMES---GETPQFSSINLDGF 532 Query: 427 NETLINTPAYASD 439 + T +A++ Sbjct: 533 EKRTHYTSKHATE 545 >gi|300114275|ref|YP_003760850.1| WD40 domain-containing protein [Nitrosococcus watsonii C-113] gi|299540212|gb|ADJ28529.1| WD40 domain protein beta Propeller [Nitrosococcus watsonii C-113] Length = 366 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 44/280 (15%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD------- 232 + +S + +++ MD DG N+R ++ + +P+ Q + YA+ Sbjct: 79 IFQSTRDDLKCDAIFRMDADGKNVRQVSSGKGVTTCSF-IAPDDQAIIYASTHLAGDQCP 137 Query: 233 -DEDILRVYLMDTRID----------RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 D + Y+ R+ + +S G + + + + Sbjct: 138 PKPDYSQGYVWPLYEGYDIFRADPEGGNRVRLTDTPGYDAEGVYSPQGDKIIFTSARTGD 197 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------------------R 322 ++++ + + E+LT+ + A +S D IV+ + R Sbjct: 198 LELFMMSPDGSEMEQLTDQPGYDGGAFFSRDGQWIVWRASRPEGKALADYQSLLKQGLIR 257 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKK 378 G+ ++++M +++ + A+ F P W P G I F+ G F + ++ Sbjct: 258 PGRLEIFIMNLEERKPIQLTDNGAAN-FGPYWHPDGKHIIFSSNMHNPKGRNFDLFLINV 316 Query: 379 DGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 D + E++ P +S G+ L+F+ ++G + Sbjct: 317 DTRKIEQITYHPDFDGFPMFSHDGKKLVFASNRNGKVEGE 356 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 96/268 (35%), Gaps = 44/268 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FS + +++ + + D+ + +++ + + + + + + + + Sbjct: 71 FSFDGKELIFQSTRDDLKCDAIFRMDADGKNVRQVSSGKGVTTCSFIAPDDQAIIYASTH 130 Query: 279 --------------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 E DI+ D + RLT+T + YSP +I+F Sbjct: 131 LAGDQCPPKPDYSQGYVWPLYEGYDIFRADPEGGNRVRLTDTPGYDAEGVYSPQGDKIIF 190 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------------- 365 S R G +L++M +GS+ ++++ D+ +S G I + Sbjct: 191 TSARTGDLELFMMSPDGSEMEQLT-DQPGYDGGAFFSRDGQWIVWRASRPEGKALADYQS 249 Query: 366 ------FSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK- 417 + I +M + + L ++ P W P G+ +IFS G Sbjct: 250 LLKQGLIRPGRLEIFIMNLEERKPIQLTDNGAANFGPYWHPDGKHIIFSSNMHNPKGRNF 309 Query: 418 -LYSIDLNGRN-ETLINTPAYASDPQWV 443 L+ I+++ R E + P + P + Sbjct: 310 DLFLINVDTRKIEQITYHPDFDGFPMFS 337 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 40/263 (15%) Query: 133 VKDRKQIIGKKFFSSPASWRKIA--HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 V K + F + A H D K D++ ++ Sbjct: 105 VSSGKGVTTCSFIAPDDQAIIYASTHLAGDQ-----CPPKPDYSQGYVWPLYEG------ 153 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + D +G N R E +SP K+ + + D+ + + Sbjct: 154 YDIFRADPEGGN-RVRLTDTPGYDAEGVYSPQGDKIIFTSARTGDLELFMMSPDGSEM-- 210 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKD-------------------EAMDIYSVDLQS 291 +++ + FS +G+ + + ++I+ ++L+ Sbjct: 211 EQLTDQPGYDGGAFFSRDGQWIVWRASRPEGKALADYQSLLKQGLIRPGRLEIFIMNLEE 270 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEA 347 +LT+ N + PD I+F S+ L+++ + ++I+ + Sbjct: 271 RKPIQLTDNGAANFGPYWHPDGKHIIFSSNMHNPKGRNFDLFLINVDTRKIEQITYHPD- 329 Query: 348 SYFDPVWSPQGDLIAFTKFSGEK 370 P++S G + F K Sbjct: 330 FDGFPMFSHDGKKLVFASNRNGK 352 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 34/180 (18%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFD 351 +LT N A +S D +++F+S R+ + ++ M ++G + +++S K Sbjct: 57 LRQLTFG-GQNAEAYFSFDGKELIFQSTRDDLKCDAIFRMDADGKNVRQVSSGK-GVTTC 114 Query: 352 PVWSPQGDLIAFTKFS--------------------GEKFAIGVMKKDGSQERLLVEDSN 391 +P I + E + I +G L + Sbjct: 115 SFIAPDDQAIIYASTHLAGDQCPPKPDYSQGYVWPLYEGYDIFRADPEGGNRVRLTDTPG 174 Query: 392 LQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAY------ASDPQWV 443 A +SP G +IF+ + GD +L+ + +G E L + P Y + D QW+ Sbjct: 175 YDAEGVYSPQGDKIIFTSARTGD--LELFMMSPDGSEMEQLTDQPGYDGGAFFSRDGQWI 232 >gi|18645084|gb|AAL76385.1| conserved hypothetical protein [uncultured marine proteobacterium] Length = 1101 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 28/201 (13%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G R + D D+YSV L + LT + N ++SPD +I F SDR+G Sbjct: 53 VSPDGTRVIF----DMLGDLYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRDG 108 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKF---AIGVMKKD 379 + ++VM +GS+ +++ +++ + +P WSP IA K SG I + + Sbjct: 109 NDNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVN 168 Query: 380 GSQERLLVEDSN-------LQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSID-- 422 G +V +++ + P +SP G L +S+ + D+ ++++I Sbjct: 169 GGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRL 228 Query: 423 --LNGRNETLINTPAYASDPQ 441 G +T+ P A P Sbjct: 229 DLTTGEIDTITGGPGGAVRPT 249 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 32/237 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +V + D+ V L + + P FS +GKR +D Sbjct: 54 SPDGTRVIF--DMLGDLYSVPL----SGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRD 107 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF----ESDRE-GKEQLYVMQS 333 +I+ +D+ + ++T+ N+ + ++SPDS I S R ++++ Sbjct: 108 GNDNIWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHV 167 Query: 334 NGSDQKRISQDKEA-----SYFDPVWSPQGDLIAFTK-------------FSGEKFAIGV 375 NG + + + S +P +SP GD + +++ +GE FAI Sbjct: 168 NGGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRR 227 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + + PT SP G L F K+ D S + DL ET++ Sbjct: 228 LDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFV-KRLPDFNSAIVIRDLTSGMETIV 283 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 41/244 (16%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY----ATY 231 RI FVS+ + + VMD DG+N+ +T R L P +SP+ Q +A + Sbjct: 99 RIAFVSDRDGNDN----IWVMDIDGSNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSG 154 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRS-----MILAPRFSSNGKRALIS----------V 276 +++ + + N I P FS +G S Sbjct: 155 RSIPSGEIWMYHVNGGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQY 214 Query: 277 QKDEAMDIY---SVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-REGKEQLYVMQ 332 KD +I+ +DL + + +T + + SPD S++ F + + + Sbjct: 215 NKDSTGEIFAIRRLDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFVKRLPDFNSAIVIRD 274 Query: 333 SNGSDQ----------KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + ++ + + W P G + F I + + Sbjct: 275 LTSGMETIVYDSLERDEQETAGSHGNTTAFEWLPNGRDLVFWTAG----RIHRLDTETGD 330 Query: 383 ERLL 386 ++L Sbjct: 331 TKIL 334 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 109/263 (41%), Gaps = 38/263 (14%) Query: 199 DGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DGA LT RD + P S + Q+V Y +++D+D+ RV ++ T + + Sbjct: 392 DGAQKPARLTEQRDHFEYWPALSADGQQVVYTSWNDQDLGRVKVV-TAKGGPSRTLVKTP 450 Query: 258 SMILAPRFSSNGKRALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISAS 308 + P+FS +G+ + IY V + ++++ + Sbjct: 451 GHYVQPKFSPDGEMVVYRKTTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSAGH---HPT 507 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +S D S+++F + E +L+ + G D++ I+Q ++ + + SP G+ +AFT Sbjct: 508 FSADGSRVLFTTRGEKGLELHSVDHMGLDKRVIAQGEKVTSY--AVSPDGNWLAFT---- 561 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT------------WSPSGRSLIFSRKKDGDTGS 416 E F + VM + + ++ + + P WS ++L +S G Sbjct: 562 EHFRVYVMPLTITGKPMVAQRAGGAVPVRGVSERAGEFLHWSADSQALRWS------NGP 615 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 L++ +L +L A D Sbjct: 616 ALFTRNLTDAFTSLAPVDQQADD 638 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 56/325 (17%) Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + P WR I +I E ++ + + V + L + G ++ Sbjct: 30 SNPPGPWRDI----------TIETESTTWSFVDVSPDGTRVIFDMLGDLYSVPLSGGSVT 79 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 LT + F+P FSP+ +++A+ + D + +++MD + + + P Sbjct: 80 ALTEGIE-WNFQPTFSPDGKRIAFVSDRDGN-DNIWVMDIDGSNVTQVTSERKHNLHNPA 137 Query: 265 FSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERL------TNTLFINISASYSPDS 313 +S + + +S + + +I+ + + + T ++SPD Sbjct: 138 WSPDSQWIAVRKGTVSGRSIPSGEIWMYHVNGGSGIEVVNNTDGTRAQKSIAEPAFSPDG 197 Query: 314 SQIVFESDREGKE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + + D + + + I+ P SP G Sbjct: 198 DYLYYSQDTTSGWVWQYNKDSTGEIFAIRRLDLTTGEIDTIT-GGPGGAVRPTPSPDGSK 256 Query: 361 IAFTKFSGE-KFAIGVMKKDGSQERLLVED------------SNLQAPTWSPSGRSLIFS 407 +AF K + AI + E ++ + N A W P+GR L+F Sbjct: 257 LAFVKRLPDFNSAIVIRDLTSGMETIVYDSLERDEQETAGSHGNTTAFEWLPNGRDLVFW 316 Query: 408 RKKDGDTGSKLYSIDLNGRNETLIN 432 T +++ +D + ++ Sbjct: 317 ------TAGRIHRLDTETGDTKILP 335 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 87/241 (36%), Gaps = 24/241 (9%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNG 269 ++L + +P + + L + + P R+ R P S++G Sbjct: 361 SKMLRWAQLTPAGNSAIFGSMGH---LYHSTIREDGAQKPARLTEQRDHFEYWPALSADG 417 Query: 270 KRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 ++ + + D+ + + V + + L T + +SPD +V+ G Sbjct: 418 QQVVYTSWNDQDLGRVKVVTAKGGPSRTLVKTPGHYVQPKFSPDGEMVVYRKTTGGYLLS 477 Query: 326 ------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +Y++++ G +IS P +S G + FT + + + Sbjct: 478 PLWSVEPGIYLVKTEGGTPIKISSAG----HHPTFSADGSRVLFTTRGEKGLELHSVDHM 533 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G +R++ + + + SP G L F+ ++Y + L + ++ A + Sbjct: 534 GLDKRVIAQGEKVTSYAVSPDGNWLAFTEH------FRVYVMPLTITGKPMVAQRAGGAV 587 Query: 440 P 440 P Sbjct: 588 P 588 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 91/274 (33%), Gaps = 42/274 (15%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF- 265 T + PN + + + + I R+ P ++ + + RF Sbjct: 294 TAGSHGNTTAFEWLPNGRDLVF--WTAGRIHRLDTETGDTKILPIQLSVTKKVRDTVRFP 351 Query: 266 ---SSN---------------GKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINIS 306 + + G A+ D RLT Sbjct: 352 VEVAPDSVDSKMLRWAQLTPAGNSAIFGSMGHLYHSTIREDGA-QKPARLTEQRDHFEYW 410 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + S D Q+V+ S + + + R Y P +SP G+++ + K Sbjct: 411 PALSADGQQVVYTSWNDQDLGRVKVVTAKGGPSRTLVKTPGHYVQPKFSPDGEMVVYRKT 470 Query: 367 SGE---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +G + I ++K +G + + PT+S G ++F+ + G+ G + Sbjct: 471 TGGYLLSPLWSVEPGIYLVKTEGGTPIKISSAGH--HPTFSADGSRVLFTTR--GEKGLE 526 Query: 418 LYSIDLNGRNETLINTP------AYASDPQWVGF 445 L+S+D G ++ +I A + D W+ F Sbjct: 527 LHSVDHMGLDKRVIAQGEKVTSYAVSPDGNWLAF 560 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 16/126 (12%) Query: 329 YVMQSNGSDQKRISQDKE-ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + + + I+ + E ++ SP G + F + + G L Sbjct: 27 WDVSNPPGPWRDITIETESTTWSFVDVSPDGTRVIFDMLGD----LYSVPLSGGSVTALT 82 Query: 388 EDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT--------PAYAS 438 E PT+SP G+ + F +DG ++ +D++G N T + + PA++ Sbjct: 83 EGIEWNFQPTFSPDGKRIAFVSDRDG--NDNIWVMDIDGSNVTQVTSERKHNLHNPAWSP 140 Query: 439 DPQWVG 444 D QW+ Sbjct: 141 DSQWIA 146 >gi|160873141|ref|YP_001552457.1| amidohydrolase [Shewanella baltica OS195] gi|160858663|gb|ABX47197.1| amidohydrolase [Shewanella baltica OS195] gi|315265366|gb|ADT92219.1| amidohydrolase [Shewanella baltica OS678] Length = 1062 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S +GK + + D IY + + + L + + YSP Sbjct: 46 KIDVSEGTWMNLSVSPDGKNIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSP 101 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKF 366 D I F SD +G + +++M ++GS+ + ++Q+ P WSP + Sbjct: 102 DGKHIAFTSDGDGGDNIWIMNADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASR 161 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G + L E N Q P +SP GR + FS+ D+ Sbjct: 162 SLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDS 221 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 + +Y I G E LI A P Sbjct: 222 VNGIYKIKRYDTQTGDIEILIEGTGGAIRPT 252 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + DI ++ + K + + + P +S +GK + Sbjct: 58 SVSPDGKNIVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ ++ + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 GDGGDNIWIMNADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFNSSLYLLDLKSGETTKL 285 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ KVA+ E + +++L + + + L P++S +GK + + Sbjct: 372 SPDGSKVAF-----EALGKIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWN 426 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + + + ++LT+ + ++SPD +V+ + G L Sbjct: 427 DQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTQGGNLTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLV 387 Y + G +IS D + F D + F E + + DG +R+ Sbjct: 487 YKVDIKGKQNMKISADGYQAQFG----ANADRVFFMNSSEDETPQLSSINLDGFDKRVHY 542 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 543 SSKHATEFRVSPDGEQLAFAER 564 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 75/458 (16%), Positives = 150/458 (32%), Gaps = 87/458 (18%) Query: 37 KVATNSANYSPVSIAFT--------------KFVSIDELGGKVSEVVSKDLQRSDVFNLI 82 ++ P++ F S + G + +++ D Sbjct: 76 QIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIW-IMNAD---------- 124 Query: 83 SQDSFKQKITNPD-SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 S + +T + W S +Q LV + + E L+ V + G Sbjct: 125 --GSNPRTVTQETFRLLNSPAW-SPDSQYLVARKHFTASRSLGAGEVWLYHVAGGE---G 178 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 K P + + + I + D + S+ V+GI K + D Sbjct: 179 VKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYK--IKRYDTQTG 236 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR---- 257 +I L + P SP+ K+AY DD + +YL+D + K G Sbjct: 237 DIEILIEGTGGAI-RPTPSPDGTKLAYIKRDDFNS-SLYLLDLKSGETTKLFGELDRDMQ 294 Query: 258 ------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASY 309 + ++ + K + I +++ S + ++ + S Sbjct: 295 ETWAIHGVYPTMAWTQDNKDIFFWAKG----KINRLNIASKTLTDIPFSVKTELAVQPSV 350 Query: 310 ---------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA- 347 SPD S++ FE+ ++++ R+++ Sbjct: 351 RFKQDIDKDVFEVKMLRMAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLTELNNGI 406 Query: 348 SYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 P WS G I FT ++ ++ + V+ G + + L E PT+SP G ++ Sbjct: 407 EELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVV 466 Query: 406 FSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 + + + G+ + LY +D+ G+ I+ Y Sbjct: 467 YRKTQGGNLTPRTWSQEPGLYKVDIKGKQNMKISADGY 504 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 101/322 (31%), Gaps = 49/322 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY----- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 263 IKRDDFNSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKGK 322 Query: 330 ------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFTK 365 + R QD + F+ SP G +AF Sbjct: 323 INRLNIASKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFEVKMLRMAQVSPDGSKVAFEA 382 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + + L E +N P WS G++++F+ D D G+ Sbjct: 383 LG----KIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISA 438 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 439 KGGKPKQLTSEPGKYVEPTFSP 460 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G I F I + G + + L + Q P +SP G+ Sbjct: 50 SEGTWMNLSVSPDGKNIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKH 105 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ DGD G ++ ++ +G N + + + P W Sbjct: 106 IAFTS--DGDGGDNIWIMNADGSNPRTVTQETFRLLNSPAWSP 146 >gi|217971231|ref|YP_002355982.1| amidohydrolase [Shewanella baltica OS223] gi|217496366|gb|ACK44559.1| amidohydrolase [Shewanella baltica OS223] Length = 1062 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S +GK + + D IY + + + L + + YSP Sbjct: 46 KIDVSEGTWMNLSVSPDGKNIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSP 101 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKF 366 D I F SD +G + +++M ++GS+ + ++Q+ P WSP + Sbjct: 102 DGKHIAFTSDGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASR 161 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G + L E N Q P +SP GR + FS+ D+ Sbjct: 162 SLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDS 221 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 + +Y I G E LI A P Sbjct: 222 VNGIYKIKRYDTQTGDIEILIEGTGGAIRPT 252 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + DI ++ + K + + + P +S +GK + Sbjct: 58 SVSPDGKNIVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 GDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFNSSLYLLDLKSGETTKL 285 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 97/313 (30%), Gaps = 60/313 (19%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRV 239 G +++ +MD DG+N R +T ++L P +SP+ Q + + V Sbjct: 109 TSDGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 240 YLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALISV-------------QKDEAMDI 284 +L K N + + P +S +G+ S + I Sbjct: 169 WLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI--- 341 D Q+ E L I + SPD +++ + + LY++ + ++ Sbjct: 229 KRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFNSSLYLLDLKSGETTKLFGE 288 Query: 342 -------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 + Y W+ I F G+ + V K + V+ Sbjct: 289 LDRDMQETWAIHGVYPTMAWTLDNKDIFFWA-KGKINRLNVASKTLTDIPFSVKTELAVQ 347 Query: 395 PT---------------------WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN 432 P+ SP G + F + K++ L +G+ L Sbjct: 348 PSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAF------EALGKIWLKSLPDGKMSRLTE 401 Query: 433 TPAYASD--PQWV 443 + PQW Sbjct: 402 LNNGIEELYPQWS 414 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 25/254 (9%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNLSVSPDGKNIVFDLLGDIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D + +++MD ++ +P +S + + + + + A ++ Sbjct: 110 S-DGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV- 387 + D + I + P SP G +A+ K ++ ++ + L Sbjct: 229 KRYDTQTGDIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFNSSLYLLDLKSGETTKLFG 287 Query: 388 EDSNLQAPTWSPSG 401 E TW+ G Sbjct: 288 ELDRDMQETWAIHG 301 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 103/322 (31%), Gaps = 49/322 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS--SQIVFESDRE-----GKEQ 327 + D +Y +DL+S T +L L ++ +++ + + D + K + Sbjct: 263 IKRDDFNSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTLDNKDIFFWAKGK 322 Query: 328 LYVMQSNGSDQK----------------RISQDKEASYFD------PVWSPQGDLIAFTK 365 + + R QD + FD SP G +AF Sbjct: 323 INRLNVASKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA 382 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + + L E +N P WS G++++F+ D D G+ Sbjct: 383 LG----KIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISA 438 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 439 KGGKPKQLTSEPGKYEEPTFSP 460 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 141/432 (32%), Gaps = 88/432 (20%) Query: 35 FVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQ--------RSD----VFNLI 82 + + P G K++ + D +S +F + Sbjct: 239 EILIEGTGGAIRPTP---------SPDGTKLAYIKRDDFNSSLYLLDLKSGETTKLFGEL 289 Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVL--VTGRVIKEGKDRLRVEFRLWDVKDRKQII 140 +D Q+ + W + G++ +RL V K + Sbjct: 290 DRDM--QETWAIHGVYPTMAWTLDNKDIFFWAKGKI-----NRLNV--------ASKTLT 334 Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII-----KNSLCV 195 F + + DI +K F+ ++L +++ G + + Sbjct: 335 DIPFSVKTELAVQPSVRFKQDI------DKDVFDVKMLRMAQVSPDGSKVAFEALGKIWL 388 Query: 196 -MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 DG R + P++S + + + + T++D+D V ++ + PK++ Sbjct: 389 KSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISAK-GGKPKQLT 447 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEA---------MDIYSVDLQSNATERLTNTLFINI 305 + P FS +G+ + + +Y VD++ +++ Sbjct: 448 SEPGKYEEPTFSPDGELVVYRKTQGGNLTPRTWSQEPGLYKVDIKGKQNKKI---SADGY 504 Query: 306 SASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 A + ++ ++ F S + QL + +G D KR+ + + + SP G +AF Sbjct: 505 QAQFGANADRVFFMNSSEDETPQLSSINLDGFD-KRVHYSSKHA-TEFRVSPDGGQLAFA 562 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------------TWSPSGRSLIFSRKKDG 412 E+F + V E + + + P +W+ L ++ Sbjct: 563 ----ERFKVWVTPFAKHGETVEIGPNANNLPVSQLSIRAGESISWNSKSNQLYWT----- 613 Query: 413 DTGSKLYSIDLN 424 G +LY ++ Sbjct: 614 -LGPELYQAKVD 624 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 20/184 (10%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 M+ + S +G + I+ L RLT N + +S D I Sbjct: 365 MLRMAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNI 420 Query: 317 VFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF---- 371 VF + + + + V+ + G K+++ + Y +P +SP G+L+ + K G Sbjct: 421 VFTTWNDQDQGTVQVISAKGGKPKQLTSE-PGKYEEPTFSPDGELVVYRKTQGGNLTPRT 479 Query: 372 -----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + G Q + + D + + + F D +L SI+L+G Sbjct: 480 WSQEPGLYKVDIKGKQNKKISADGYQA--QFGANADRVFFM-NSSEDETPQLSSINLDGF 536 Query: 427 NETL 430 ++ + Sbjct: 537 DKRV 540 >gi|116620277|ref|YP_822433.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116223439|gb|ABJ82148.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 880 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 63/360 (17%), Positives = 122/360 (33%), Gaps = 64/360 (17%) Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + S R++AH I+ Y V+ S L + R Sbjct: 413 GAGGSERQVAH-IAPLTYLFGILPLAWTADGKWLVAPDKPSTAGPFELTAISVQTGEKRR 471 Query: 206 LTPSRDQIL--FEPRFSPNQQKVAYATYDDEDILRVYLMD----TRIDRAPKRIGNFRSM 259 +T ++ PR SP+ + +A+ + V+ PKR+ + Sbjct: 472 VTHPPSGVIGDLLPRVSPDGRNLAFLRVSAFSVADVFTQPMTFALNAVAEPKRLTSVGWS 531 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSV-DLQSNATERLTNTLFI--------------- 303 I A +S + + L++ ++ + ++ V +Q +T+ + Sbjct: 532 ITALMWSGDSRNLLVAAEQGGSHRLWRVSPVQPGKPVPVTSLPSVGVQVATSAKGDRLVY 591 Query: 304 ---------------------------------NISASYSPDSSQIVFESDREGKEQLYV 330 ++A SPD S+I F SDR G +++V Sbjct: 592 IQTSLDIDIYRQDLPQAGEKPPPSVRLISSTRTEMNARISPDGSKIAFPSDRTGSWEIWV 651 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LLVED 389 SNG R++ P WS IAF + V++ G + R L+ Sbjct: 652 AASNGEHPVRLTSFGAGETGTPRWSADSRQIAFDARVRGNAEVYVVEASGGKPRPLVTGS 711 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-----YASDPQWVG 444 ++ P+WS G+ + F + G +++ + + G + ++D +WV Sbjct: 712 ADNFGPSWSHDGKWVYFISNRLGQ--EQVWKMPVAGGPAIQLTHGGAVCGFESTDGKWVY 769 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 12/229 (5%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP--SRDQILFEPRFS 220 Q T KGD R++++ S+ I + L + G S + R S Sbjct: 578 VQVATSAKGD---RLVYIQTSLDIDIYRQDL---PQAGEKPPPSVRLISSTRTEMNARIS 631 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ K+A+ + +++ + + + PR+S++ ++ + Sbjct: 632 PDGSKIAFPSDRTGS-WEIWVAASNGEHPVRLTSFGAGETGTPRWSADSRQIAFDARVRG 690 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 ++Y V+ L N S+S D + F S+R G+EQ++ M G + Sbjct: 691 NAEVYVVEASGGKPRPLVTGSADNFGPSWSHDGKWVYFISNRLGQEQVWKMPVAGGPAIQ 750 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++ F+ S G + T+ + +I + DG E LVE Sbjct: 751 LTHGGAVCGFE---STDGKWVYVTRAYEQPTSIWRVPADGGDEVKLVEG 796 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 91/238 (38%), Gaps = 25/238 (10%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P FSP+ ++AY D + ++L AP R+ + P +S +G++ Sbjct: 344 PAFSPDGSRIAYVWKPDREEPGIFLRVISQTSAPVRLTTGG---VNPVWSPDGRQLAFIR 400 Query: 277 QKDEAMDIYSVDLQSNATER------LTNTLFINISASYSPDSSQIVFESDRE--GKEQL 328 ++ I +D + + LT I + +++ D +V G +L Sbjct: 401 REPSRFSILLIDGAGGSERQVAHIAPLTYLFGI-LPLAWTADGKWLVAPDKPSTAGPFEL 459 Query: 329 YVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSG-------EKFAIGVMKKD 379 + +++R++ D P SP G +AF + S + + Sbjct: 460 TAISVQTGEKRRVTHPPSGVIGDLLPRVSPDGRNLAFLRVSAFSVADVFTQPMTFALNAV 519 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL--NGRNETLINTPA 435 +RL ++ A WS R+L+ + ++ G +L+ + G+ + + P+ Sbjct: 520 AEPKRLTSVGWSITALMWSGDSRNLLVAAEQGGS--HRLWRVSPVQPGKPVPVTSLPS 575 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 15/192 (7%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 A + + + + P FS +G R + D + Sbjct: 310 AAFWFGRTASSPGIPAETAPKLMPLITEPGLKSGPAFSPDGSRIAYVWKPDREEPGIFLR 369 Query: 289 L--QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 + Q++A RLT ++ +SPD Q+ F + + ++ G +++++ Sbjct: 370 VISQTSAPVRLTTGG---VNPVWSPDGRQLAFIRREPSRFSILLIDGAGGSERQVAHIAP 426 Query: 347 ASYFDP----VWSPQGDLIAF--TKFSGEKFAIGVMKKDGSQERLLVEDS----NLQAPT 396 +Y W+ G + + F + + ++R + P Sbjct: 427 LTYLFGILPLAWTADGKWLVAPDKPSTAGPFELTAISVQTGEKRRVTHPPSGVIGDLLPR 486 Query: 397 WSPSGRSLIFSR 408 SP GR+L F R Sbjct: 487 VSPDGRNLAFLR 498 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 12/146 (8%) Query: 297 LTNTLFINISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 L + ++SPD S+I + DRE + S S R++ +PVW Sbjct: 334 LITEPGLKSGPAFSPDGSRIAYVWKPDREEPGIFLRVISQTSAPVRLTTGG----VNPVW 389 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERL------LVEDSNLQAPTWSPSGRSLIFSR 408 SP G +AF + +F+I ++ G ER L + W+ G+ L+ Sbjct: 390 SPDGRQLAFIRREPSRFSILLIDGAGGSERQVAHIAPLTYLFGILPLAWTADGKWLVAPD 449 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTP 434 K +L +I + + + P Sbjct: 450 KPSTAGPFELTAISVQTGEKRRVTHP 475 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 68/240 (28%), Gaps = 53/240 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I F S+ S + V +G + LT PR+S + +++A+ Sbjct: 635 SKIAFPSDRTGS----WEIWVAASNGEHPVRLTSFGAGETGTPRWSADSRQIAF-DARVR 689 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFS---------------------------- 266 VY+++ P+ + + P +S Sbjct: 690 GNAEVYVVE-ASGGKPRPLVTGSADNFGPSWSHDGKWVYFISNRLGQEQVWKMPVAGGPA 748 Query: 267 --------------SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 ++GK ++ ++ I+ V +L + + +Y Sbjct: 749 IQLTHGGAVCGFESTDGKWVYVTRAYEQPTSIWRVPADGGDEVKLVEGVGQPL--TYEVI 806 Query: 313 SSQIVFE---SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 S I F S+ + R++ SP IAF + Sbjct: 807 ESGIYFLRRKSEESPAPGVMFYSFATQQLTRVADLDRPFSVGMSVSPDRRWIAFASPANS 866 >gi|304412719|ref|ZP_07394322.1| amidohydrolase [Shewanella baltica OS183] gi|307305816|ref|ZP_07585562.1| amidohydrolase [Shewanella baltica BA175] gi|304348929|gb|EFM13344.1| amidohydrolase [Shewanella baltica OS183] gi|306911309|gb|EFN41735.1| amidohydrolase [Shewanella baltica BA175] Length = 1062 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + L + + YSPD I F SD + Sbjct: 58 SISPDGKHVVFDLLGD----IYQIPVSGGEARPLAQGIAWQMQPVYSPDGKHIAFTSDGD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++GS+ + ++Q+ P WSP + S + + Sbjct: 114 GGDNIWLMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N Q P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGDIEILIEGTGGAIRPT 252 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + V + DI ++ + + + + + P +S +GK + Sbjct: 58 SISPDGKHVVFDLL--GDIYQIPV----SGGEARPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 GDGGDNIWLMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFNSSLYLLDLKSGETTKL 285 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ KVA+ E + +++L + + + L P++S +GK + + Sbjct: 372 SPDGSKVAF-----EALGKIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWN 426 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + + + ++LT+ + ++SPD +V+ + G L Sbjct: 427 DQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTQGGNLTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLV 387 Y + G K+IS D + F D + F E + + DG +R+ Sbjct: 487 YKVDIKGKQNKKISADGYQAQFG----ANADRVFFMNSSEDETPQLSSINLDGFDKRVHY 542 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 543 SSKHATEFRVSPDGEQLAFAER 564 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + V + + + G R L +P +SP+ + +A+ Sbjct: 51 EGTWMNLSISPDGKHVVFDLLGDIYQIPVSGGEARPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D + ++LMD ++ +P +S + + + + + A ++ Sbjct: 110 S-DGDGGDNIWLMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + I + P SP G +A+ K ++ ++ + L Sbjct: 229 KRYDTQTGDIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFNSSLYLLDLKSGETTKLFG 287 Query: 389 --DSNLQA--------PT--WSPSGRSLIF 406 D ++Q PT W+ + + F Sbjct: 288 ELDRDMQETWAIHGVYPTMAWTQDNKDIFF 317 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 67/381 (17%), Positives = 131/381 (34%), Gaps = 59/381 (15%) Query: 99 RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI 158 W S +Q LV + + E L+ V + G K P + + Sbjct: 140 NSPAW-SPDSQYLVARKHFTASRSLGAGEVWLYHVAGGE---GVKLTERPNDQKDLGEPA 195 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 + I + D + S+ V+GI K + D +I L + P Sbjct: 196 YSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYK--IKRYDTQTGDIEILIEGTGGAI-RPT 252 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAPRFSSN 268 SP+ K+AY DD + +YL+D + K G + ++ + Sbjct: 253 PSPDGTKLAYIKRDDFNS-SLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQD 311 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASY----------------- 309 K + I +++ + + ++ + S Sbjct: 312 NKDIFFWAKG----KINRLNVANKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFEVKMLR 367 Query: 310 ----SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-SYFDPVWSPQGDLIAFT 364 SPD S++ FE+ ++++ R+++ P WS G I FT Sbjct: 368 MAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFT 423 Query: 365 KFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK----- 417 ++ ++ + V+ G + + L E PT+SP G +++ + + G+ + Sbjct: 424 TWNDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPDGELVVYRKTQGGNLTPRTWSQE 483 Query: 418 --LYSIDLNGRNETLINTPAY 436 LY +D+ G+ I+ Y Sbjct: 484 PGLYKVDIKGKQNKKISADGY 504 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 101/322 (31%), Gaps = 49/322 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY----- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 263 IKRDDFNSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKGK 322 Query: 330 ------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFTK 365 + R QD + F+ SP G +AF Sbjct: 323 INRLNVANKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFEVKMLRMAQVSPDGSKVAFEA 382 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + + L E +N P WS G++++F+ D D G+ Sbjct: 383 LG----KIWLKSLPDGKMSRLTELNNGIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISA 438 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 439 KGGKPKQLTSEPGKYVEPTFSP 460 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 40/103 (38%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIF----------------------------------- 406 Q ++ V + + SP G+ ++F Sbjct: 44 QVKIDVNEGTWMNLSISPDGKHVVFDLLGDIYQIPVSGGEARPLAQGIAWQMQPVYSPDG 103 Query: 407 ---SRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + DGD G ++ +D +G N + + + P W Sbjct: 104 KHIAFTSDGDGGDNIWLMDADGSNPRTVTQETFRLLNSPAWSP 146 >gi|332304917|ref|YP_004432768.1| amidohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172246|gb|AEE21500.1| amidohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1114 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 34/259 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R P A +++ D I + + S +GK+ + Sbjct: 24 RVEPQDSMPATHEEKSNKEPEWDVLNPPFDLHEVSISTDETTWSSLDVSPDGKQFVF--- 80 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 D DIY + + LT NI ++SPD S+I F SDR+G ++VM S+GS+ Sbjct: 81 -DMLGDIYVSPIAGGEAKSLTQDFAWNIQPTFSPDGSKIAFISDRDGLSNVWVMNSDGSN 139 Query: 338 QKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLL------ 386 +++ +K P WSP G I + S I + G ++ Sbjct: 140 LVQVTDEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIWLYHHSGGDGMVIKKRVHG 199 Query: 387 -VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-----------LYSIDLN-GRNETLINT 433 + N+ P +SP G+ L +++ + + DLN G E I+ Sbjct: 200 NPDQKNIADPAFSPDGKYLYYTQDVSPGSTFDYNRDPLKSIFAIARYDLNTGEEERYISG 259 Query: 434 ------PAYASDPQWVGFM 446 P + D + + F+ Sbjct: 260 TGGAVVPTPSPDGKHIAFI 278 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 107/288 (37%), Gaps = 37/288 (12%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++ ++ GD SR+ +S+ + + S + D N + E +S Sbjct: 9 ALFGAMFSLSGDALSRVE-PQDSMPATHEEKSNKEPEWDVLNPPFDLHEVSISTDETTWS 67 Query: 221 -----PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P+ ++ + D +Y+ K + + + P FS +G + Sbjct: 68 SLDVSPDGKQFVFDMLGD-----IYVSPI-AGGEAKSLTQDFAWNIQPTFSPDGSKIAFI 121 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-----FESDREGKEQLY 329 +D +++ ++ + ++T+ I S +SPD IV S +++ Sbjct: 122 SDRDGLSNVWVMNSDGSNLVQVTDEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIW 181 Query: 330 VMQSNGSD----QKRISQDKEA-SYFDPVWSPQGDLIAFTKFSGEK-------------F 371 + +G D +KR+ + + + DP +SP G + +T+ F Sbjct: 182 LYHHSGGDGMVIKKRVHGNPDQKNIADPAFSPDGKYLYYTQDVSPGSTFDYNRDPLKSIF 241 Query: 372 AIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 AI + +E R + PT SP G+ + F R+ TG + Sbjct: 242 AIARYDLNTGEEERYISGTGGAVVPTPSPDGKHIAFIRRVKNKTGLFI 289 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 123/363 (33%), Gaps = 99/363 (27%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA------- 227 S+I F+S+ +++ VM+ DG+N+ +T ++ ++ P++SP+ Q + Sbjct: 116 SKIAFISDRDG----LSNVWVMNSDGSNLVQVTDEKNNLIHSPKWSPDGQYIVANKGIMS 171 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILA-PRFSSNGKRALIS---------- 275 + +I + KR+ GN +A P FS +GK + Sbjct: 172 SRSIPAGEIWLYHHSGGDGMVIKKRVHGNPDQKNIADPAFSPDGKYLYYTQDVSPGSTFD 231 Query: 276 VQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +D I+++ DL + ER + + + SPD I F + K L++ Sbjct: 232 YNRDPLKSIFAIARYDLNTGEEERYISGTGGAVVPTPSPDGKHIAFIRRVKNKTGLFIKN 291 Query: 333 SNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAF------------------- 363 + + E + W P I F Sbjct: 292 IATGIETPLYLALERDMQEGFGSEGYFPYFDWMPDSKSIVFWTAGKFHALDVKTQAIKDI 351 Query: 364 -----------------TKFSGEKFAIGVMK-----KDGS------------------QE 383 + + F I + + DG + Sbjct: 352 PVSVKASVKYADAVRFDVDVAPDTFDIKMARWAQKSPDGKSILFQALGKLYVKDIKSGKA 411 Query: 384 RLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDP 440 + L D + P +S G+ ++F+ D GS + ++ +GR+E +I T P + +P Sbjct: 412 KRLTRQNDHDEYYPRYSHDGKKIVFTTWSDETLGS-VRTVSASGRSEKVITTEPGHYIEP 470 Query: 441 QWV 443 + Sbjct: 471 SFS 473 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 90/253 (35%), Gaps = 39/253 (15%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + V G + LT +P FSP+ K+A+ + D + + V++M++ + Sbjct: 85 DIYVSPIAGGEAKSLTQDF-AWNIQPTFSPDGSKIAFIS-DRDGLSNVWVMNSDGSNLVQ 142 Query: 252 RIGNFRSMILAPRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNA---TERLTNTLFI 303 ++I +P++S +G+ + +S + A +I+ ++ + Sbjct: 143 VTDEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIWLYHHSGGDGMVIKKRVHGNPD 202 Query: 304 N---ISASYSPDSSQIV----------FESDREGKEQLY---VMQSNGSDQKRISQDKEA 347 ++SPD + F+ +R+ + ++ N +++R Sbjct: 203 QKNIADPAFSPDGKYLYYTQDVSPGSTFDYNRDPLKSIFAIARYDLNTGEEERYISGTGG 262 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV------------EDSNLQAP 395 + P SP G IAF + K + + E L + Sbjct: 263 AVV-PTPSPDGKHIAFIRRVKNKTGLFIKNIATGIETPLYLALERDMQEGFGSEGYFPYF 321 Query: 396 TWSPSGRSLIFSR 408 W P +S++F Sbjct: 322 DWMPDSKSIVFWT 334 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 44/265 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS------MILAP--------R 264 + P+ + + + T L V + + + + +AP R Sbjct: 323 WMPDSKSIVFWTAGKFHALDVKTQAIKDIPVSVKASVKYADAVRFDVDVAPDTFDIKMAR 382 Query: 265 F---SSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES 320 + S +GK L +Y D++S +RLT YS D +IVF + Sbjct: 383 WAQKSPDGKSILFQA----LGKLYVKDIKSGKAKRLTRQNDHDEYYPRYSHDGKKIVFTT 438 Query: 321 DREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------K 370 + + + ++G +K I+ + Y +P +S LI + K +G + Sbjct: 439 WSDETLGSVRTVSASGRSEKVITTE-PGHYIEPSFSTDDKLITYNKKTGGYLLAPEYSVE 497 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD--TGSKLYSIDLNGRNE 428 I V G + + + AP ++ + + G +L S+DLNG ++ Sbjct: 498 PGIYVASSKGKNHKRVAKKGA--APHFAGDNSRVYITESVAGSDYPEQQLVSVDLNGEDK 555 Query: 429 TLINTPAY-------ASDPQWVGFM 446 + D +W+ F+ Sbjct: 556 REHLYGGDKIAEYRLSPDKKWIAFV 580 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 27/211 (12%) Query: 218 RF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 R+ SP+ + + + ++Y+ D + +A + PR+S +GK+ + Sbjct: 382 RWAQKSPDGKSILFQALG-----KLYVKDIKSGKAKRLTRQNDHDEYYPRYSHDGKKIVF 436 Query: 275 SVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-------- 325 + DE + + +V + + +T I S+S D I + G Sbjct: 437 TTWSDETLGSVRTVSASGRSEKVITTEPGHYIEPSFSTDDKLITYNKKTGGYLLAPEYSV 496 Query: 326 -EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKF---AIGVMKKDG 380 +YV S G + KR+++ A P ++ + T +G + + + +G Sbjct: 497 EPGIYVASSKGKNHKRVAKKGAA----PHFAGDNSRVYITESVAGSDYPEQQLVSVDLNG 552 Query: 381 SQERL-LVEDSNLQAPTWSPSGRSLIFSRKK 410 +R L + SP + + F + Sbjct: 553 EDKREHLYGGDKIAEYRLSPDKKWIAFVYQY 583 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 39/280 (13%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-----NSLCVMDRDGANIRYLTPSRD 211 +D + + F+ ++ ++ G L V D + LT D Sbjct: 360 KYADAVRFDVDVAPDTFDIKMARWAQKSPDGKSILFQALGKLYVKDIKSGKAKRLTRQND 419 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+S + +K+ + T+ DE + V + + R+ K I + P FS++ K Sbjct: 420 HDEYYPRYSHDGKKIVFTTWSDETLGSVRTV-SASGRSEKVITTEPGHYIEPSFSTDDKL 478 Query: 272 ALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 + + IY + +R+ + ++ D+S++ Sbjct: 479 ITYNKKTGGYLLAPEYSVEPGIYVASSKGKNHKRVAKKGA---APHFAGDNSRVYITESV 535 Query: 323 EGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 G +QL + NG D++ + + SP IAF + V Sbjct: 536 AGSDYPEQQLVSVDLNGEDKREHLYGGD-KIAEYRLSPDKKWIAFVYQ----YKAYVAPF 590 Query: 379 DGSQERLLVEDSNLQAP------------TWSPSGRSLIF 406 +R + S+ P TW +++ + Sbjct: 591 TEIGQRQDIGPSSTTIPIKQLSDRAGEYLTWHSDSQTVSW 630 >gi|146291120|ref|YP_001181544.1| amidohydrolase [Shewanella putrefaciens CN-32] gi|145562810|gb|ABP73745.1| amidohydrolase [Shewanella putrefaciens CN-32] Length = 1062 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++G + ++++ P WSP + S + + Sbjct: 114 GGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N + P +SP GR + FS+ D+ + +Y I Sbjct: 174 TGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGEIEILIEGTGGAIRPT 252 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + SP+ + + + DI ++ + K + + + Sbjct: 43 EQVKVDVNEGTWMNLSVSPDGKHIVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQ 96 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV---- 317 P +S +GK + D +I+ +D +T F + S ++SPDS +V Sbjct: 97 PVYSPDGKHIAFTSDGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKH 156 Query: 318 FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS------- 367 F + R G ++++ G + +++ + E +P +SP G I F++ Sbjct: 157 FTASRSLGAGEVWLYHVTGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFH 216 Query: 368 ------GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + I + +L+E PT SP G L + ++ D S LY Sbjct: 217 YSKDSVNGIYKIKRYDTQTGEIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYL 274 Query: 421 IDL-NGRNETL 430 +DL +G L Sbjct: 275 LDLKSGETTKL 285 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 92/270 (34%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNLSVSPDGKHIVFDLLGDIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D + +++MD + ++ +P +S + + + + + A ++ Sbjct: 110 S-DGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVTGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + + I + P SP G +A+ K + ++ ++ + L Sbjct: 229 KRYDTQTGEIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLFG 287 Query: 389 --DSNLQA--------PT--WSPSGRSLIF 406 D ++Q PT W+ + + F Sbjct: 288 ELDRDMQETWAIHGVYPTMAWTQDSKDIFF 317 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ KV + E + +++L + + +++ L P++S +GK + + Sbjct: 372 SPDGSKVTF-----EALGKIWLKSLPDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTWN 426 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + + + ++LT+ + ++SP+ +V+ + G L Sbjct: 427 DQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPNGELVVYRKTQGGNLTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLV 387 Y K+IS D + F D + F E + + DG +R+ Sbjct: 487 YKADLKTKQNKKISSDGYQAQFG----ANADRVFFMNSSEDETPQLSSINLDGFDKRVHY 542 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 543 SSKHATEFRVSPDGEQLAFAER 564 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 103/322 (31%), Gaps = 49/322 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ ++ L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVTGGEGVKLTERPNDEKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGEIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY----- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 263 IKRDDFQSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDSKDIFFWAKGK 322 Query: 330 ------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFTK 365 + R QD + FD SP G + F Sbjct: 323 INRLNVANKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVTFEA 382 Query: 366 FSGEKFAIGVMK-KDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + DG RL D N+ P WS G++++F+ D D G+ Sbjct: 383 LG----KIWLKSLPDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTWNDQDQGTVQVISA 438 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 439 KGGKPKQLTSEPGKYVEPTFSP 460 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 74/466 (15%), Positives = 146/466 (31%), Gaps = 103/466 (22%) Query: 37 KVATNSANYSPVSIAFT--------------KFVSIDELGGKVSEVVSKDLQRSDV---- 78 ++ P++ F S + G + ++ D Sbjct: 76 QIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIW-IMDAD----GKKPRT 130 Query: 79 -----FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 F L++ ++ + F SLGA G V L+ V Sbjct: 131 VTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGA-----GEVW------------LYHV 173 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + G K P + + + I + D + S+ V+GI K Sbjct: 174 TGGE---GVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKR 230 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + P SP+ K+AY DD +YL+D + K Sbjct: 231 YDTQ---TGEIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQS-SLYLLDLKSGETTKLF 286 Query: 254 GNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 G + ++ + K + I +++ + + ++ Sbjct: 287 GELDRDMQETWAIHGVYPTMAWTQDSKDIFFWAKG----KINRLNVANKTLTDIPFSVKT 342 Query: 304 N--ISASY---------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + S SPD S++ FE+ ++++ R Sbjct: 343 ELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVTFEA----LGKIWLKSLPDGKMSR 398 Query: 341 ISQ-DKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTW 397 +++ DK + P WS G I FT ++ ++ + V+ G + + L E PT+ Sbjct: 399 LTELDKNIAELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTF 458 Query: 398 SPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 SP+G +++ + + G+ + LY DL + I++ Y Sbjct: 459 SPNGELVVYRKTQGGNLTPRTWSQEPGLYKADLKTKQNKKISSDGY 504 Score = 38.8 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 40/103 (38%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIF----------------------------------- 406 Q ++ V + + SP G+ ++F Sbjct: 44 QVKVDVNEGTWMNLSVSPDGKHIVFDLLGDIYQIPVTGGEAKPLAQGIAWQMQPVYSPDG 103 Query: 407 ---SRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + DGD G ++ +D +G+ + + + P W Sbjct: 104 KHIAFTSDGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSP 146 >gi|300786706|ref|YP_003766997.1| TolB-related protein [Amycolatopsis mediterranei U32] gi|299796220|gb|ADJ46595.1| TolB-related protein [Amycolatopsis mediterranei U32] Length = 1342 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 100/308 (32%), Gaps = 58/308 (18%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L + RDGA + D + P SP+ + VA+A+ R + R Sbjct: 97 RDGELWFL-RDGAPTALQLTNDDAVDLHPALSPDGRTVAFASERTGS--RKLFVIGVDGR 153 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISA 307 +++ + + +P +S +G R S +D+ A DIY+V + RLT + Sbjct: 154 GLRQVTSGPATDDSPSWSPDGTRLAFSSTRDDPAGDIYTVGVDGGTPARLTTDPAADTQP 213 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-- 365 ++ P ++I F + R V+ + + +P WSP G +AFT Sbjct: 214 AWGP--ARIAFTTTRFHPAGDVVLMAEAGGAVTRAVPDPGDSSEPAWSPDGR-LAFTTRA 270 Query: 366 ------------------------------------------FSGEKFAIGVMKKDGSQE 383 + I G Sbjct: 271 KDPSGDVRQIVGETVTDISALKDIGETEPTFRSDGRPVFTELRASGTTDIWSADAAGGDR 330 Query: 384 RLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDT-GSKLYSIDLNGRNETLINTPAYA--- 437 R L ++ P +S G L +++ GD+ +++ + +G + P Sbjct: 331 RDLTNRPGADEFDPAFSADGSQLAYTQGGRGDSVATEIIVANADGSGPRPLTGPTDGTKR 390 Query: 438 -SDPQWVG 444 P W Sbjct: 391 ERHPAWSP 398 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 108/298 (36%), Gaps = 31/298 (10%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 T + ++ ++ S + + DG LT +P + P ++ Sbjct: 164 TDDSPSWSPDGTRLAFSSTRDDPAGDIYTVGVDGGTPARLTTD-PAADTQPAWGPA--RI 220 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 A+ T V LM + + + P +S +G+ A + KD + D+ Sbjct: 221 AFTTTRFHPAGDVVLMAEAGGAVTRAVPD-PGDSSEPAWSPDGRLAFTTRAKDPSGDVRQ 279 Query: 287 VDLQSNATERLTNTLFI----NISASYSPDSSQIVFESDR-EGKEQLYVMQSNGSDQKRI 341 + ++ +T+ + ++ D + VF R G ++ + G D++ + Sbjct: 280 IVGET-----VTDISALKDIGETEPTFRSDG-RPVFTELRASGTTDIWSADAAGGDRRDL 333 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKF---AIGVMKKDGSQERLLVEDSN----LQA 394 + A FDP +S G +A+T+ I V DGS R L ++ + Sbjct: 334 TNRPGADEFDPAFSADGSQLAYTQGGRGDSVATEIIVANADGSGPRPLTGPTDGTKRERH 393 Query: 395 PTWSPSGRSLIFSRKKDGDTGS----KLYSIDLNGRNETLINTP----AYASDPQWVG 444 P WSP ++ F+ G S ++ + +GR I P S P W Sbjct: 394 PAWSPDATAIAFTVTVGGGESSRDVVRIARV-ADGRILGEIPIPPYLSGNDSQPVWSA 450 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 11/172 (6%) Query: 277 QKDEAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++D + L+ A +LTN +++ + SPD + F S+R G +L+V+ + Sbjct: 96 ERDGELWF----LRDGAPTALQLTNDDAVDLHPALSPDGRTVAFASERTGSRKLFVIGVD 151 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQE-RLLVEDSNL 392 G ++++ A+ P WSP G +AF+ + I + DG RL + + Sbjct: 152 GRGLRQVTS-GPATDDSPSWSPDGTRLAFSSTRDDPAGDIYTVGVDGGTPARLTTDPAAD 210 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P W P + F+ + G + + G + P +S+P W Sbjct: 211 TQPAWGP--ARIAFTTTRFHPAGDVVLMAEAGGAVTRAVPDPGDSSEPAWSP 260 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + + GA R + D EP +SP+ ++A+ T + V + + Sbjct: 236 MAEAGGAVTRAVPDPGDS--SEPAWSPDG-RLAFTTRAKDPSGDVRQIVGETVTDISALK 292 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDS 313 + P F S+G+ ++ DI+S D LTN + ++S D Sbjct: 293 DIG--ETEPTFRSDGRPVFTELRASGTTDIWSADAAGGDRRDLTNRPGADEFDPAFSADG 350 Query: 314 SQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEAS--YFDPVWSPQGDLIAFTKFSG 368 SQ+ + G ++ V ++GS + ++ + + P WSP IAFT G Sbjct: 351 SQLAYTQGGRGDSVATEIIVANADGSGPRPLTGPTDGTKRERHPAWSPDATAIAFTVTVG 410 Query: 369 EK------FAIGVMKKDGSQERLLVE-------DSNLQAPTWSPSGRSLIFSR 408 I + DG R+L E N P WS G + +R Sbjct: 411 GGESSRDVVRIARV-ADG---RILGEIPIPPYLSGNDSQPVWSADGTKVTLTR 459 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 7/104 (6%) Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL----QAPTW 397 + SP G + F ++ + V DG + R+LV+ + P W Sbjct: 893 TPCGVGRQGSADVSPDGAALVF---QNDRSQLCVAPADGGRARVLVQSGDEGESLNDPAW 949 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 SP G + + S L G LI+ P A P Sbjct: 950 SPDGTLVAYDSAFSESVPSILIVPSAGGTPRPLIDGPGGAGQPA 993 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%) Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQ 357 + SA SPD + +VF++DR QL V ++G + + Q + S DP WSP Sbjct: 896 GVGRQGSADVSPDGAALVFQNDRS---QLCVAPADGGRARVLVQSGDEGESLNDPAWSPD 952 Query: 358 GDLIAF-TKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTW 397 G L+A+ + FS +I ++ G R L++ P + Sbjct: 953 GTLVAYDSAFSESVPSILIVPSAGGTPRPLIDGPGGAGQPAF 994 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 22/146 (15%) Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF--------------SSNGKRA 272 A + D R L + P + L+P F S +G Sbjct: 853 AVVSVDPGGEYRQELWQVALAAGPDSVVPGTQRNLSPSFGTPCGVGRQGSADVSPDGAAL 912 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVFES-DREGKEQL 328 + +++ + L + S ++SPD + + ++S E + Sbjct: 913 VF---QNDRSQLCVAPADGGRARVLVQSGDEGESLNDPAWSPDGTLVAYDSAFSESVPSI 969 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVW 354 ++ S G + + D P + Sbjct: 970 LIVPSAGGTPRPLI-DGPGGAGQPAF 994 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQ--ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 ++ LCV DG R L S D+ L +P +SP+ VAY + E + + ++ + Sbjct: 916 NDRSQLCVAPADGGRARVLVQSGDEGESLNDPAWSPDGTLVAYDSAFSESVPSILIVPS- 974 Query: 246 IDRAPKRIGNFRSMILAPRF 265 P+ + + P F Sbjct: 975 AGGTPRPLIDGPGGAGQPAF 994 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 3/91 (3%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQK 278 SP+ + + +D L V D R + G+ + P +S +G S Sbjct: 906 SPDGAALVF--QNDRSQLCVAPADGGRARVLVQSGDEGESLNDPAWSPDGTLVAYDSAFS 963 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASY 309 + I V L + ++ Sbjct: 964 ESVPSILIVPSAGGTPRPLIDGPGGAGQPAF 994 >gi|313677004|ref|YP_004055000.1| amidohydrolase [Marivirga tractuosa DSM 4126] gi|312943702|gb|ADR22892.1| amidohydrolase [Marivirga tractuosa DSM 4126] Length = 1146 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 21/205 (10%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 L+ S +G L D DIYS+ ++T + ++ YSPD I Sbjct: 52 EGTWLSVDVSPDGSTILF----DMMGDIYSIPFTGGKATKITEGMPYDVHPRYSPDGKSI 107 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 VF SD+ G + ++ M + K+I++D +YF W+P G+ I K + + Sbjct: 108 VFISDKSGSDNIWTMDLATEEMKQITKDDNQNYFSADWTPDGEYIIGAKGR-RNIKLHIY 166 Query: 377 KKDGSQERLLVEDSNL---QAPTWSPSGRSLIFSRKKDG------DTGSKLYSIDL-NGR 426 K+G L++ + PT SP G+ L FS++ ++ + D+ +G Sbjct: 167 HKEGGSGAQLIDKPDNLKTTDPTVSPDGKLLYFSKRNSAWNYNAQFPQYQIGTYDMEDGD 226 Query: 427 NETLIN------TPAYASDPQWVGF 445 T+ + TP + D +W+ + Sbjct: 227 MATITSRYGSAFTPTISPDGKWLVY 251 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 20/228 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + DI + +I + PR+S +GK + K Sbjct: 61 SPDGSTILFDMM--GDIYSIPF----TGGKATKITEGMPYDVHPRYSPDGKSIVFISDKS 114 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV-FESDREGKEQLYVMQSNGSD 337 + +I+++DL + +++T N SA ++PD I+ + R K +Y + GS Sbjct: 115 GSDNIWTMDLATEEMKQITKDDNQNYFSADWTPDGEYIIGAKGRRNIKLHIY-HKEGGSG 173 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKK-DGSQERLLVE 388 + I + DP SP G L+ F+K + ++ IG DG + Sbjct: 174 AQLIDKPDNLKTTDPTVSPDGKLLYFSKRNSAWNYNAQFPQYQIGTYDMEDGDMATITSR 233 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + PT SP G+ L++ + + +TG L +L +E + P Sbjct: 234 YGSAFTPTISPDGKWLVYGTRFETETG--LVRRNLKTGDEEWLAYPVQ 279 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 103/301 (34%), Gaps = 45/301 (14%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQI-LFEPRFSPNQQKVAYA----TYDDEDILR 238 G L + ++G + L D + +P SP+ + + ++ ++ Sbjct: 154 GAKGRRNIKLHIYHKEGGSGAQLIDKPDNLKTTDPTVSPDGKLLYFSKRNSAWNYNAQFP 213 Query: 239 VYLMDT--RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 Y + T D I + P S +GK + + + + +L++ E Sbjct: 214 QYQIGTYDMEDGDMATITSRYGSAFTPTISPDGKWLVYGTRFETETGLVRRNLKTGDEEW 273 Query: 297 LTNTLFINISASYSPDSSQIV--FESDR-----EGKEQLYVMQSNGSDQKRISQDKE--- 346 L + + S +P F D +++ + N I + + Sbjct: 274 LAYPVQRDEQESIAPLGVYPAMSFTPDSKFLIATYGGKIHKIDINAKTASEIPFEVDLKL 333 Query: 347 --------------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 D V SP G +AFT + + VM + L Sbjct: 334 ELGPRLKFEYPISDEKEAFVTQIRDGVPSPDGSKLAFTALN----RLYVMDLPNGDPKRL 389 Query: 387 VEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE--TLINTPAYASDPQWV 443 + +A P WSP G ++FS ++ + G LY I+ NGR + L PA DP+W Sbjct: 390 TKHKFTEAMPAWSPDGSQIVFSTWEEKEGG-HLYKINSNGRGKAVKLTQNPALYLDPEWS 448 Query: 444 G 444 Sbjct: 449 Y 449 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 91/287 (31%), Gaps = 32/287 (11%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 ++G + S + S + + + + G +T PR+SP+ + + Sbjct: 50 TKEGTWLSVDVSPDGSTILFDMMGDIYSIPFTGGKATKITEG-MPYDVHPRYSPDGKSIV 108 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + + D ++ MD + + + + ++ +G+ I + + ++ Sbjct: 109 FIS-DKSGSDNIWTMDLATEEMKQITKDDNQNYFSADWTPDGEYI-IGAKGRRNIKLHIY 166 Query: 288 DLQSNATERLTNTLFI--NISASYSPDSSQIVFESDREGKE--------QLYVMQSNGSD 337 + + +L + + SPD + F Q+ D Sbjct: 167 HKEGGSGAQLIDKPDNLKTTDPTVSPDGKLLYFSKRNSAWNYNAQFPQYQIGTYDMEDGD 226 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-------- 389 I+ + S F P SP G + + + + E L Sbjct: 227 MATITS-RYGSAFTPTISPDGKWLVYGTRFETETGLVRRNLKTGDEEWLAYPVQRDEQES 285 Query: 390 ----SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 A +++P + LI G K++ ID+N + + I Sbjct: 286 IAPLGVYPAMSFTPDSKFLI------ATYGGKIHKIDINAKTASEIP 326 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 23/178 (12%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-ESDREG 324 S +G + + +Y +DL + +RLT F ++SPD SQIVF + + Sbjct: 362 SPDGSKLAFTA----LNRLYVMDLPNGDPKRLTKHKFTEAMPAWSPDGSQIVFSTWEEKE 417 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------- 371 LY + SNG + A Y DP WS + I F + + + + Sbjct: 418 GGHLYKINSNGRGKAVKLTQNPALYLDPEWSYTKNRIVFNRGANQVYKDAIDPFGSLMME 477 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + DG + L+ + P +S + + G L SI +G +E Sbjct: 478 DLAWISADGGKVTLIDKAKGRSTPHFSKVSDRIYLNHGSKG-----LISIRWDGTDEK 530 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 101/310 (32%), Gaps = 79/310 (25%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIK----NSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 I+ EK F ++I S + N L VMD + + LT + P +SP Sbjct: 345 ISDEKEAFVTQIRDGVPSPDGSKLAFTALNRLYVMDLPNGDPKRLTKHK-FTEAMPAWSP 403 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + ++ ++T+++++ +Y +++ ++ ++ L P +S R + + ++ Sbjct: 404 DGSQIVFSTWEEKEGGHLYKINSNGRGKAVKLTQNPALYLDPEWSYTKNRIVFNRGANQV 463 Query: 282 M-------------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EG 324 D+ + + + +S SDR G Sbjct: 464 YKDAIDPFGSLMMEDLAWISADGGKVTLIDKAKGRST-PHFSK-------VSDRIYLNHG 515 Query: 325 KEQLYVMQSNGSDQK---RIS--------------QDKEASYFDP--------------- 352 + L ++ +G+D+K +++ D + Sbjct: 516 SKGLISIRWDGTDEKEHLQLTGITTYGSSIDMIHAHDGSHNILPGDEKAWRENNKASKPS 575 Query: 353 --VWSPQGD----------LIAFTKFSGEKFAIGVMKKDGS---QERLLVEDSNLQAPTW 397 SP G+ G+ I + K D + +L V + P W Sbjct: 576 EIRISPNGETALAKINNDVYSVTIPKYGQTPKISLAKADNAAFPAMKLTVMGG--EFPAW 633 Query: 398 SPSGRSLIFS 407 S + + +S Sbjct: 634 SGDSKKIHWS 643 >gi|157959840|ref|YP_001499874.1| amidohydrolase [Shewanella pealeana ATCC 700345] gi|157844840|gb|ABV85339.1| amidohydrolase [Shewanella pealeana ATCC 700345] Length = 1066 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S NGK + + D IY + + + L + + YSP Sbjct: 43 KIEVDEGTWMNVSVSPNGKHVVFDLLGD----IYQMPIAGGEAKPLAKGIAWQMQPVYSP 98 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KF 366 D I F SD +G + ++VMQ++GS+ + ++++ P WSP G + FT Sbjct: 99 DGKYIAFTSDEDGGDNIWVMQADGSNPRPVTKETFRLLNSPAWSPDGQYLVARKHFTGSR 158 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G L E N Q P +SP G + FS+ D+ Sbjct: 159 SLGAGEVWMYHVAGGDGVKLTERPNEQKDLGEPAYSPDGHYIYFSQDSTPGKTFHYSKDS 218 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 +Y I G E LI A P Sbjct: 219 VKGIYKIKRYDTQTGDIEVLIQGTGGAIRPT 249 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN + V + D +Y M K + + + P +S +GK + Sbjct: 55 SVSPNGKHVVFDLLGD-----IYQMPI-AGGEAKPLAKGIAWQMQPVYSPDGKYIAFTSD 108 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 +D +I+ + + +T F + S ++SPD +V F R G ++++ Sbjct: 109 EDGGDNIWVMQADGSNPRPVTKETFRLLNSPAWSPDGQYLVARKHFTGSRSLGAGEVWMY 168 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G D +++ +++ +P +SP G I F++ S + I Sbjct: 169 HVAGGDGVKLTERPNEQKDLGEPAYSPDGHYIYFSQDSTPGKTFHYSKDSVKGIYKIKRY 228 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L++ PT SP G L + ++ S LY +DL +G E L Sbjct: 229 DTQTGDIEVLIQGTGGAIRPTPSPDGNKLAYIKRDG--FQSSLYLLDLKSGETEKL 282 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 100/286 (34%), Gaps = 38/286 (13%) Query: 159 SDDIYQSITGE--KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 +D + I E +G + + + + V + + M G + L + Sbjct: 35 ADAPLEQIKIEVDEGTWMNVSVSPNGKHVVFDLLGDIYQMPIAGGEAKPLAKG-IAWQMQ 93 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL--- 273 P +SP+ + +A+ + +D + + P FR + +P +S +G+ + Sbjct: 94 PVYSPDGKYIAFTSDEDGGDNIWVMQADGSNPRPVTKETFRLLN-SPAWSPDGQYLVARK 152 Query: 274 -ISVQKD-EAMDIYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE----- 323 + + A +++ + +LT +YSPD I F D Sbjct: 153 HFTGSRSLGAGEVWMYHVAGGDGVKLTERPNEQKDLGEPAYSPDGHYIYFSQDSTPGKTF 212 Query: 324 --------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 G ++ + D + + Q + P SP G+ +A+ K G + ++ + Sbjct: 213 HYSKDSVKGIYKIKRYDTQTGDIEVLIQGTGGAIR-PTPSPDGNKLAYIKRDGFQSSLYL 271 Query: 376 MKKDGSQERLLVE--DSNLQA--------P--TWSPSGRSLIFSRK 409 + + L D ++Q P +W+ ++F Sbjct: 272 LDLKSGETEKLYGELDRDMQETWAIHGVYPTMSWTTDNNEILFWAN 317 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 19/200 (9%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +KVA+ I L D ++ R K + R L P++S +GK+ + + D Sbjct: 369 SPDGKKVAFEAL--GKIWVKSLPDGKMSRLTKLDSDLR--ELFPQWSRDGKKVVFTTWDD 424 Query: 280 EAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQLY 329 + S+ ++++ + LT+ + ++SPD +V+ + G LY Sbjct: 425 QEQGTVSLANVRNKRVKVLTDEPGKYVEPTFSPDGETVVYRKAKGGYITPRTWSQETGLY 484 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + +G +I+ + P + D + F + SGE + + +G ++R+ Sbjct: 485 QVDIDGDKNTKITSAG----YQPQFGADNDRVYFME-SGETPQLASIGLNGFEKRVHYTS 539 Query: 390 SNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 540 KHATEFRVSPDGKQLAFAER 559 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 105/301 (34%), Gaps = 53/301 (17%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + D +I L + P SP+ K+AY D +Y Sbjct: 213 HYSKDSVKGIYKIKRYDTQTGDIEVLIQGTGGAI-RPTPSPDGNKLAYIKRD-GFQSSLY 270 Query: 241 LMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 L+D + K G + ++++ L I +D++ Sbjct: 271 LLDLKSGETEKLYGELDRDMQETWAIHGVYPTMSWTTDNNEILFWA----NGKINKLDVE 326 Query: 291 SNATERL----------------TNTLFINIS-------ASYSPDSSQIVFESDREGKEQ 327 S + ++ T L ++ A SPD ++ FE+ + Sbjct: 327 SKSVAQIPFTIKTERAIQPAVRFTQDLDKDVFDVKMLRMAQVSPDGKKVAFEA----LGK 382 Query: 328 LYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERL 385 ++V R+++ D + P WS G + FT + E+ + + + ++ Sbjct: 383 IWVKSLPDGKMSRLTKLDSDLRELFPQWSRDGKKVVFTTWDDQEQGTVSLANVRNKRVKV 442 Query: 386 LVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLINTPAYA 437 L + PT+SP G ++++ + K G + LY +D++G T I + Y Sbjct: 443 LTDEPGKYVEPTFSPDGETVVYRKAKGGYITPRTWSQETGLYQVDIDGDKNTKITSAGYQ 502 Query: 438 S 438 Sbjct: 503 P 503 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 112/289 (38%), Gaps = 44/289 (15%) Query: 169 EKGDFNSRILFVSESVVSGII-----KNSLCV-MDRDGANIRYLTPSRDQILFEPRFSPN 222 +K F+ ++L +++ G + V DG R D P++S + Sbjct: 354 DKDVFDVKMLRMAQVSPDGKKVAFEALGKIWVKSLPDGKMSRLTKLDSDLRELFPQWSRD 413 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 +KV + T+DD++ V L + R ++ K + + + P FS +G+ + K + Sbjct: 414 GKKVVFTTWDDQEQGTVSLANVR-NKRVKVLTDEPGKYVEPTFSPDGETVVYRKAKGGYI 472 Query: 283 D---------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +Y VD+ + ++T+ + + D+ ++ F + QL + Sbjct: 473 TPRTWSQETGLYQVDIDGDKNTKITSAGY---QPQFGADNDRVYFM-ESGETPQLASIGL 528 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 NG +++ K A+ F SP G +AF E+F + V E + + Sbjct: 529 NGFEKRVHYTSKHATEF--RVSPDGKQLAFA----ERFKVFVTPFAKHGETIKIGPKASN 582 Query: 394 AP------------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 P +W+ L ++ G +LY ++++ + + Sbjct: 583 LPVEQLSVRAGESISWNTDSNQLYWT------LGPELYQVNVDTQYQQQ 625 Score = 37.3 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TP 434 Q ++ V++ + SP+G+ ++F D +Y + + G + P Sbjct: 41 QIKIEVDEGTWMNVSVSPNGKHVVF------DLLGDIYQMPIAGGEAKPLAKGIAWQMQP 94 Query: 435 AYASDPQWVGF 445 Y+ D +++ F Sbjct: 95 VYSPDGKYIAF 105 >gi|40063481|gb|AAR38281.1| amidohydrolase domain protein [uncultured marine bacterium 581] Length = 1101 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 28/201 (13%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G R + D D+YSV L + LT + N ++SPD +I F SDR+G Sbjct: 53 VSPDGTRVIF----DMLGDLYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRDG 108 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKF---AIGVMKKD 379 + ++VM +G++ +++ +++ + +P WSP IA K SG I + + Sbjct: 109 NDNIWVMDIDGTNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVN 168 Query: 380 GSQERLLVEDSN-------LQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSID-- 422 G +V +++ + P +SP G L +S+ + D+ ++++I Sbjct: 169 GGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRL 228 Query: 423 --LNGRNETLINTPAYASDPQ 441 G +T+ P A P Sbjct: 229 DLTTGEIDTITGGPGGAVRPT 249 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 32/237 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +V + D+ V L + + P FS +GKR +D Sbjct: 54 SPDGTRVIF--DMLGDLYSVPL----SGGSVTALTEGIEWNFQPTFSPDGKRIAFVSDRD 107 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVF----ESDRE-GKEQLYVMQS 333 +I+ +D+ ++T+ N+ + ++SPDS I S R ++++ Sbjct: 108 GNDNIWVMDIDGTNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHV 167 Query: 334 NGSDQKRISQDKEA-----SYFDPVWSPQGDLIAFTK-------------FSGEKFAIGV 375 NG + + + S +P +SP GD + +++ +GE FAI Sbjct: 168 NGGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRR 227 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + + PT SP G L F K+ D S + DL ET++ Sbjct: 228 LDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFV-KRLPDFNSAIVIRDLTSGMETIV 283 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 41/244 (16%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY----ATY 231 RI FVS+ + + VMD DG N+ +T R L P +SP+ Q +A + Sbjct: 99 RIAFVSDRDGNDN----IWVMDIDGTNVTQVTSERKHNLHNPAWSPDSQWIAVRKGTVSG 154 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRS-----MILAPRFSSNGKRALIS----------V 276 +++ + + N I P FS +G S Sbjct: 155 RSIPSGEIWMYHVNGGSGIEVVNNTDGTRAQKSIAEPAFSPDGDYLYYSQDTTSGWVWQY 214 Query: 277 QKDEAMDIY---SVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-REGKEQLYVMQ 332 KD +I+ +DL + + +T + + SPD S++ F + + + Sbjct: 215 NKDSTGEIFAIRRLDLTTGEIDTITGGPGGAVRPTPSPDGSKLAFVKRLPDFNSAIVIRD 274 Query: 333 SNGSDQ----------KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + ++ + + W P G + F I + + Sbjct: 275 LTSGMETIVYDSLERDEQETAGSHGNTTAFEWLPNGRDLVFWTAG----RIHRLDTETGD 330 Query: 383 ERLL 386 ++L Sbjct: 331 TKIL 334 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 109/263 (41%), Gaps = 38/263 (14%) Query: 199 DGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DGA LT RD + P S + Q+V Y +++D+++ RV ++ + + + Sbjct: 392 DGAQKPARLTEQRDHFEYWPALSADGQQVVYTSWNDQNLGRVKVVSAK-GGPSRTLVKTP 450 Query: 258 SMILAPRFSSNGKRALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISAS 308 + P+FS +G+ + IY V + ++++ + Sbjct: 451 GHYVQPKFSPDGEMVVYRKTTGGYLLSPLWSVEPGIYLVKTEGGTPIKISSAGH---HPT 507 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +S D S+++F + E +L+ + G D++ I+Q ++ + + SP G+ +AFT Sbjct: 508 FSADGSRVLFTTRGEKGLELHSVDHMGLDKRVIAQGEKVTSY--AVSPDGNWLAFT---- 561 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPT------------WSPSGRSLIFSRKKDGDTGS 416 E F + VM + + ++ + + P WS ++L +S G Sbjct: 562 EHFRVYVMPLTITGKPMVAQRAGGAVPVRGVSERAGEFLHWSADSQALHWS------NGP 615 Query: 417 KLYSIDLNGRNETLINTPAYASD 439 L++ +L +L A D Sbjct: 616 ALFTRNLTDAFTSLAPVDQQADD 638 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 46/278 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G ++ LT + F+P FSP+ +++A+ + D + +++MD + Sbjct: 67 DLYSVPLSGGSVTALTEGIE-WNFQPTFSPDGKRIAFVSDRDGN-DNIWVMDIDGTNVTQ 124 Query: 252 RIGNFRSMILAPRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNATERL------TNT 300 + + P +S + + +S + + +I+ + + + T Sbjct: 125 VTSERKHNLHNPAWSPDSQWIAVRKGTVSGRSIPSGEIWMYHVNGGSGIEVVNNTDGTRA 184 Query: 301 LFINISASYSPDSSQIVFESDREGKE-------------QLYVMQSNGSDQKRISQDKEA 347 ++SPD + + D + + + I+ Sbjct: 185 QKSIAEPAFSPDGDYLYYSQDTTSGWVWQYNKDSTGEIFAIRRLDLTTGEIDTIT-GGPG 243 Query: 348 SYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVED------------SNLQA 394 P SP G +AF K + AI + E ++ + N A Sbjct: 244 GAVRPTPSPDGSKLAFVKRLPDFNSAIVIRDLTSGMETIVYDSLERDEQETAGSHGNTTA 303 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 W P+GR L+F T +++ +D + ++ Sbjct: 304 FEWLPNGRDLVFW------TAGRIHRLDTETGDTKILP 335 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 87/241 (36%), Gaps = 24/241 (9%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNG 269 ++L + +P + + L + + P R+ R P S++G Sbjct: 361 SKMLRWAQLTPAGNSAIFGSMGH---LYHSTIREDGAQKPARLTEQRDHFEYWPALSADG 417 Query: 270 KRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 ++ + + D+ + + V + + L T + +SPD +V+ G Sbjct: 418 QQVVYTSWNDQNLGRVKVVSAKGGPSRTLVKTPGHYVQPKFSPDGEMVVYRKTTGGYLLS 477 Query: 326 ------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +Y++++ G +IS P +S G + FT + + + Sbjct: 478 PLWSVEPGIYLVKTEGGTPIKISSAG----HHPTFSADGSRVLFTTRGEKGLELHSVDHM 533 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G +R++ + + + SP G L F+ ++Y + L + ++ A + Sbjct: 534 GLDKRVIAQGEKVTSYAVSPDGNWLAFTEH------FRVYVMPLTITGKPMVAQRAGGAV 587 Query: 440 P 440 P Sbjct: 588 P 588 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 91/274 (33%), Gaps = 42/274 (15%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF- 265 T + PN + + + + I R+ P ++ + + RF Sbjct: 294 TAGSHGNTTAFEWLPNGRDLVF--WTAGRIHRLDTETGDTKILPIQLSVTKKVRDTVRFP 351 Query: 266 ---SSN---------------GKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINIS 306 + + G A+ D RLT Sbjct: 352 VEVAPDSVDSKMLRWAQLTPAGNSAIFGSMGHLYHSTIREDGA-QKPARLTEQRDHFEYW 410 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + S D Q+V+ S + + S R Y P +SP G+++ + K Sbjct: 411 PALSADGQQVVYTSWNDQNLGRVKVVSAKGGPSRTLVKTPGHYVQPKFSPDGEMVVYRKT 470 Query: 367 SGE---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +G + I ++K +G + + PT+S G ++F+ + G+ G + Sbjct: 471 TGGYLLSPLWSVEPGIYLVKTEGGTPIKISSAGH--HPTFSADGSRVLFTTR--GEKGLE 526 Query: 418 LYSIDLNGRNETLINTP------AYASDPQWVGF 445 L+S+D G ++ +I A + D W+ F Sbjct: 527 LHSVDHMGLDKRVIAQGEKVTSYAVSPDGNWLAF 560 Score = 76.6 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 15/105 (14%) Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFS 407 + SP G + F + + G L E PT+SP G+ + F Sbjct: 48 WSFVDVSPDGTRVIFDMLGD----LYSVPLSGGSVTALTEGIEWNFQPTFSPDGKRIAFV 103 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINT--------PAYASDPQWVG 444 +DG ++ +D++G N T + + PA++ D QW+ Sbjct: 104 SDRDG--NDNIWVMDIDGTNVTQVTSERKHNLHNPAWSPDSQWIA 146 >gi|319424426|gb|ADV52500.1| amidohydrolase [Shewanella putrefaciens 200] Length = 1062 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++G + ++++ P WSP + S + + Sbjct: 114 GGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N + P +SP GR + FS+ D+ + +Y I Sbjct: 174 TGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGEIEILIEGTGGAIRPT 252 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + SP+ + + + DI ++ + K + + + Sbjct: 43 EQVKVDVNEGTWMNLSVSPDGKHIVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQ 96 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV---- 317 P +S +GK + D +I+ +D +T F + S ++SPDS +V Sbjct: 97 PVYSPDGKHIAFTSDGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKH 156 Query: 318 FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS------- 367 F + R G ++++ G + +++ + E +P +SP G I F++ Sbjct: 157 FTASRSLGAGEVWLYHVTGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFH 216 Query: 368 ------GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + I + +L+E PT SP G L + ++ D S LY Sbjct: 217 YSKDSVNGIYKIKRYDTQTGEIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYL 274 Query: 421 IDL-NGRNETL 430 +DL +G L Sbjct: 275 LDLKSGETTKL 285 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ KVA+ E + +++L + + +++ L P++S +GK + + Sbjct: 372 SPDGSKVAF-----EALGKIWLKSLPDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTWS 426 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + + + ++LT+ + ++SP+ +V+ + G L Sbjct: 427 DQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPNGELVVYRKTQGGNLTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLV 387 Y + G +IS D + F D + F E + + DG +R+ Sbjct: 487 YKVDIKGKQNSKISADGYQAQFG----ANADRVFFMNSSEDETPQLSSINLDGFDKRVHY 542 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 543 SSKHATEFRVSPDGEQLAFAER 564 Score = 93.5 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 92/270 (34%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNLSVSPDGKHIVFDLLGDIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D + +++MD + ++ +P +S + + + + + A ++ Sbjct: 110 S-DGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVTGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + + I + P SP G +A+ K + ++ ++ + L Sbjct: 229 KRYDTQTGEIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLFG 287 Query: 389 --DSNLQA--------PT--WSPSGRSLIF 406 D ++Q PT W+ + + F Sbjct: 288 ELDRDMQETWAIHGVYPTMAWTQDNKDIFF 317 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 75/466 (16%), Positives = 148/466 (31%), Gaps = 103/466 (22%) Query: 37 KVATNSANYSPVSIAFT--------------KFVSIDELGGKVSEVVSKDLQRSDV---- 78 ++ P++ F S + G + ++ D Sbjct: 76 QIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIW-IMDAD----GKKPRT 130 Query: 79 -----FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 F L++ ++ + F SLGA G V L+ V Sbjct: 131 VTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGA-----GEVW------------LYHV 173 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + G K P + + + I + D + S+ V+GI K Sbjct: 174 TGGE---GVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKR 230 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + P SP+ K+AY DD +YL+D + K Sbjct: 231 YDTQ---TGEIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQS-SLYLLDLKSGETTKLF 286 Query: 254 GNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 G + ++ + K + I +++ + + ++ Sbjct: 287 GELDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKG----KINRLNVANKTLTDIPFSVKT 342 Query: 304 N--ISASY---------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + S SPD S++ FE+ ++++ R Sbjct: 343 ELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSR 398 Query: 341 ISQ-DKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTW 397 +++ DK + P WS G I FT +S ++ + V+ G + + L E PT+ Sbjct: 399 LTELDKNIAELYPQWSRDGKNIVFTTWSDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTF 458 Query: 398 SPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 SP+G +++ + + G+ + LY +D+ G+ + I+ Y Sbjct: 459 SPNGELVVYRKTQGGNLTPRTWSQEPGLYKVDIKGKQNSKISADGY 504 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 104/322 (32%), Gaps = 49/322 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ ++ L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVTGGEGVKLTERPNDEKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGEIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY----- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 263 IKRDDFQSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKGK 322 Query: 330 ------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFTK 365 + R QD + FD SP G +AF Sbjct: 323 INRLNVANKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA 382 Query: 366 FSGEKFAIGVMK-KDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + DG RL D N+ P WS G++++F+ D D G+ Sbjct: 383 LG----KIWLKSLPDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTWSDQDQGTVQVISA 438 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 439 KGGKPKQLTSEPGKYVEPTFSP 460 Score = 38.8 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 40/103 (38%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIF----------------------------------- 406 Q ++ V + + SP G+ ++F Sbjct: 44 QVKVDVNEGTWMNLSVSPDGKHIVFDLLGDIYQIPVTGGEAKPLAQGIAWQMQPVYSPDG 103 Query: 407 ---SRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + DGD G ++ +D +G+ + + + P W Sbjct: 104 KHIAFTSDGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSP 146 >gi|114045524|ref|YP_736074.1| amidohydrolase [Shewanella sp. MR-7] gi|113886966|gb|ABI41017.1| amidohydrolase [Shewanella sp. MR-7] Length = 1062 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + D +IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHLVF----DLLGNIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDAD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M +NGS+ + ++ + P WSP + S + + Sbjct: 114 GGDNIWIMDANGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N + P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGDIEILIEGTGGAIRPT 252 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + D+L K + + + P +S +GK + Sbjct: 58 SVSPDGKHLVF------DLLGNIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 ADGGDNIWIMDANGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + +++ + E +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYLLDLKSGETTKL 285 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 91/270 (33%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + ++ + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNISVSPDGKHLVFDLLGNIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN-----GKRALISVQKDEAMDI 284 + D + +++MD ++ +P +S + G++ + + A ++ Sbjct: 110 S-DADGGDNIWIMDANGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + I + P SP G +A+ K + ++ ++ + L Sbjct: 229 KRYDTQTGDIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYG 287 Query: 389 DSNLQA----------PT--WSPSGRSLIF 406 D + PT W+ + + F Sbjct: 288 DLDRDMQETWAIHGVYPTMAWTQDNKDIFF 317 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 103/343 (30%), Gaps = 91/343 (26%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDR 248 + +MD +G+N R +T ++L P +SP+ Q + + V+L Sbjct: 118 IWIMDANGSNPRTVTTETFRLLNSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHVAGGE 177 Query: 249 APKRIG--NFRSMILAPRFSSNGKRALISV-------------QKDEAMDIYSVDLQSNA 293 K N + P +S +G+ S + I D Q+ Sbjct: 178 GVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGD 237 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI----------SQ 343 E L I + SPD +++ + + + LY++ + ++ + Sbjct: 238 IEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYGDLDRDMQETW 297 Query: 344 DKEASYFDPVWSPQGDLIAFTK------------------------------------FS 367 Y W+ I F Sbjct: 298 AIHGVYPTMAWTQDNKDIFFWAKGKINRLNVANKTVTNIPFRVKTQLDVQPSVRFKQDID 357 Query: 368 GEKFAIGV-----MKKDGSQE-------------------RLLVEDSNLQA--PTWSPSG 401 + F + + + DGS+ RL ++++ P WS G Sbjct: 358 KDVFDVKMLRMAQVSPDGSKVAFEALGKIWLKTLPDGKMSRLTELGNDIEELYPQWSRDG 417 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++++F+ D D G+ G+ + L P +P + Sbjct: 418 KNIVFTTWNDQDQGTVQVISAKGGKAKQLTTEPGKYVEPTFSP 460 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 23/203 (11%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQ 277 SP+ KVA+ + L + T D R+ + I L P++S +GK + + Sbjct: 372 SPDGSKVAF------EALGKIWLKTLPDGKMSRLTELGNDIEELYPQWSRDGKNIVFTTW 425 Query: 278 KD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQ 327 D + + + + ++LT + ++SPDS +V+ + G Sbjct: 426 NDQDQGTVQVISAKGGKAKQLTTEPGKYVEPTFSPDSELVVYRKTQGGHLTPRTWSQEPG 485 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLL 386 LY + K+I+ + + F D I F + + + DG +R+ Sbjct: 486 LYKVDLKTKQNKKITAEGYQAQFGAS----ADRIFFMNTGENDTPQLASINLDGFDKRVH 541 Query: 387 VEDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 542 YSSKHATEFRVSPDGEQLAFAER 564 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 69/401 (17%), Positives = 131/401 (32%), Gaps = 75/401 (18%) Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F L++ ++ F SLGA G V L+ V + Sbjct: 136 FRLLNSPAWSPDSQYLVGRKHFTASRSLGA-----GEVW------------LYHVAGGE- 177 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 G K P + + + I + D + S+ V+GI K + D Sbjct: 178 --GVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYK--IKRYDT 233 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR- 257 +I L + P SP+ K+AY DD +YL+D + K G+ Sbjct: 234 QTGDIEILIEGTGGAI-RPTPSPDGTKLAYIKRDDFQS-SLYLLDLKSGETTKLYGDLDR 291 Query: 258 ---------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT--LFINIS 306 + ++ + K + I +++ + + +++ Sbjct: 292 DMQETWAIHGVYPTMAWTQDNKDIFFWAKG----KINRLNVANKTVTNIPFRVKTQLDVQ 347 Query: 307 ASY---------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 S SPD S++ FE+ ++++ R+++ Sbjct: 348 PSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA----LGKIWLKTLPDGKMSRLTELG 403 Query: 346 EA-SYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGR 402 P WS G I FT ++ ++ + V+ G + + L E PT+SP Sbjct: 404 NDIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKAKQLTTEPGKYVEPTFSPDSE 463 Query: 403 SLIFSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 +++ + + G + LY +DL + I Y Sbjct: 464 LVVYRKTQGGHLTPRTWSQEPGLYKVDLKTKQNKKITAEGY 504 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G + F I + G + + L + Q P +SP G+ Sbjct: 50 TEGTWMNISVSPDGKHLVFDLLG----NIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKH 105 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ DG G ++ +D NG N + T + + P W Sbjct: 106 IAFTSDADG--GDNIWIMDANGSNPRTVTTETFRLLNSPAWSP 146 >gi|292492884|ref|YP_003528323.1| hypothetical protein Nhal_2871 [Nitrosococcus halophilus Nc4] gi|291581479|gb|ADE15936.1| WD40 domain protein beta Propeller [Nitrosococcus halophilus Nc4] Length = 358 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 110/287 (38%), Gaps = 46/287 (16%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD------- 232 + +S + +++ MD DG N+R ++ + +P+ Q + YA+ Sbjct: 71 IFQSTRDNLKCDAIFRMDADGKNVRMVSSGKGVTTCSF-IAPDNQSIIYASTHLAGEQCP 129 Query: 233 -DEDILRVYLMDTRIDRAP----------KRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 D + Y+ R+ + +S G + + + + Sbjct: 130 PKPDYSQGYVWPLYKGYDIFRADPEGDNLVRLTDTPGYDAEAVYSPLGDKIIFTSVRTGD 189 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------------------R 322 +++++++ + E+LT+ + A +S D IV+ + R Sbjct: 190 LELFTMNPDGSGVEQLTDEPGYDGGAFFSRDGQWIVWRASRPQGKALEDYQHLLKQGLIR 249 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKK 378 G+ ++++M +++ + A+ F P W P G I F+ G F + ++ Sbjct: 250 PGQLEIFIMNLEERKPIQLTDNGAAN-FGPYWHPDGKHIIFSSNMHNPKGRNFDLFLINV 308 Query: 379 DGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG--DTGSKLYSID 422 + + E++ P +S G+ L+F+ ++G + ++ +D Sbjct: 309 ETREIEQVTYYPDFDGFPMFSHDGKKLVFASNRNGKVKGETNVFMVD 355 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 92/268 (34%), Gaps = 44/268 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FS + ++ + + D + + + + + + + + + + + Sbjct: 63 FSFDGSELIFQSTRDNLKCDAIFRMDADGKNVRMVSSGKGVTTCSFIAPDNQSIIYASTH 122 Query: 279 --------------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + DI+ D + + RLT+T + A YSP +I+F Sbjct: 123 LAGEQCPPKPDYSQGYVWPLYKGYDIFRADPEGDNLVRLTDTPGYDAEAVYSPLGDKIIF 182 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------------- 365 S R G +L+ M +GS ++++ D+ +S G I + Sbjct: 183 TSVRTGDLELFTMNPDGSGVEQLT-DEPGYDGGAFFSRDGQWIVWRASRPQGKALEDYQH 241 Query: 366 ------FSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSK- 417 + I +M + + L ++ P W P G+ +IFS G Sbjct: 242 LLKQGLIRPGQLEIFIMNLEERKPIQLTDNGAANFGPYWHPDGKHIIFSSNMHNPKGRNF 301 Query: 418 -LYSIDLNGRN-ETLINTPAYASDPQWV 443 L+ I++ R E + P + P + Sbjct: 302 DLFLINVETREIEQVTYYPDFDGFPMFS 329 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 38/206 (18%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTN-----TLFINISASYSPDSSQIVFESDREGK-- 325 ++ + + + DL+ + LT+ N A +S D S+++F+S R+ Sbjct: 22 AMAAEPTDNPTPAAEDLRYPGEKHLTHIRQLTFGGQNAEAYFSFDGSELIFQSTRDNLKC 81 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------------------ 367 + ++ M ++G + + +S K +P I + Sbjct: 82 DAIFRMDADGKNVRMVSSGK-GVTTCSFIAPDNQSIIYASTHLAGEQCPPKPDYSQGYVW 140 Query: 368 --GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + I +G L + +SP G +IF+ + GD +L++++ + Sbjct: 141 PLYKGYDIFRADPEGDNLVRLTDTPGYDAEAVYSPLGDKIIFTSVRTGD--LELFTMNPD 198 Query: 425 GRN-ETLINTPAY------ASDPQWV 443 G E L + P Y + D QW+ Sbjct: 199 GSGVEQLTDEPGYDGGAFFSRDGQWI 224 >gi|126172273|ref|YP_001048422.1| WD40 domain-containing protein [Shewanella baltica OS155] gi|125995478|gb|ABN59553.1| WD40 domain protein beta Propeller [Shewanella baltica OS155] Length = 445 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHIVFDLLGD----IYQIPVSGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++GS+ + ++Q+ P WSP + S + + Sbjct: 114 GGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N Q P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGDIEILIEGTGGAIRPT 252 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + DI ++ + K + + + P +S +GK + Sbjct: 58 SVSPDGKHIVF--DLLGDIYQIPV----SGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSD 111 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ +D + +T F + S ++SPDS +V F + R G ++++ Sbjct: 112 GDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLY 171 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + I Sbjct: 172 HVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 231 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 232 DTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFNSSLYLLDLKSGETTKL 285 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNLSVSPDGKHIVFDLLGDIYQIPVSGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D + +++MD ++ +P +S + + + + + A ++ Sbjct: 110 S-DGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + I + P SP G +A+ K ++ ++ + L Sbjct: 229 KRYDTQTGDIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFNSSLYLLDLKSGETTKLFG 287 Query: 389 --DSNLQA--------PT--WSPSGRSLIF 406 D ++Q PT W+ + + F Sbjct: 288 ELDRDMQETWAIHGVYPTMAWTQDNKDIFF 317 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 96/299 (32%), Gaps = 49/299 (16%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY----- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 263 IKRDDFNSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDNKDIFFWAKGK 322 Query: 330 ------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFTK 365 + R QD + FD SP G +AF Sbjct: 323 INRLNVASKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA 382 Query: 366 FSGEKFAIGVMK-KDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSI 421 I + DG RL ++ ++ P WS G++++F+ D + G+ + Sbjct: 383 LG----KIWLKSLPDGKMSRLTELNNGVEELYPQWSRDGKNIVFTTWNDQEQGTVQVLV 437 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 99/306 (32%), Gaps = 50/306 (16%) Query: 99 RFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI 158 W S +Q LV + + E L+ V + G K P + + Sbjct: 140 NSPAW-SPDSQYLVARKHFTASRSLGAGEVWLYHVAGGE---GVKLTERPNDQKDLGEPA 195 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 + I + D + S+ V+GI K + D +I L + P Sbjct: 196 YSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYK--IKRYDTQTGDIEILIEGTGGAI-RPT 252 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAPRFSSN 268 SP+ K+AY DD + +YL+D + K G + ++ + Sbjct: 253 PSPDGTKLAYIKRDDFNS-SLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQD 311 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASY----------------- 309 K + I +++ S + ++ + S Sbjct: 312 NKDIFFWAKG----KINRLNVASKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLR 367 Query: 310 ----SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-SYFDPVWSPQGDLIAFT 364 SPD S++ FE+ ++++ R+++ P WS G I FT Sbjct: 368 MAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLTELNNGVEELYPQWSRDGKNIVFT 423 Query: 365 KFSGEK 370 ++ ++ Sbjct: 424 TWNDQE 429 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 40/103 (38%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIF----------------------------------- 406 Q ++ V + + SP G+ ++F Sbjct: 44 QVKIDVNEGTWMNLSVSPDGKHIVFDLLGDIYQIPVSGGEAKPLAQGIAWQMQPVYSPDG 103 Query: 407 ---SRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + DGD G ++ +D +G N + + + P W Sbjct: 104 KHIAFTSDGDGGDNIWIMDADGSNPRTVTQETFRLLNSPAWSP 146 >gi|326522999|dbj|BAJ88545.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 706 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 145/405 (35%), Gaps = 82/405 (20%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 P F S GA LV + G + +E + D+ I +F Sbjct: 288 TPPGFHAFTPAASPGAPGLVAVATRRPGSEYRHIE--VIDLSAGGGIENAAYFEMTRPVA 345 Query: 153 KIAHTISDDI--------YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 AH + + Y G G+ +S +L S + + DG+ Sbjct: 346 PRAHHFNPFVSPDGARVGYHRCRG-TGNGDSPLLLESLKSPASESLFRI-----DGS--- 396 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS------ 258 P FSP+ +++A+ + +Y++++ ++I + + Sbjct: 397 -----------YPSFSPDGRRIAFV-----GLPGLYVVNSDGSGGRRKIFSGNAFPTSWD 440 Query: 259 --------MILAPRF---SSNGKRALISV--QKDEAMDIYSVDLQSNATERLTNTLFINI 305 + P F S+ +S+ D+ IY V + ++LT N Sbjct: 441 WKRKGVIYTSIGPDFASESTEVDVVAVSLGDDNDDDGSIYQVSI-----KKLTVGGENNA 495 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAF 363 S SPD +VF S R G + LY+M + + I + + + D WSP G+ IAF Sbjct: 496 FPSPSPDGKWLVFRSGRSGHKNLYIMDAEEGEAGGIRRLTDGPWTDTMCNWSPDGEWIAF 555 Query: 364 TKFS----GEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRK------- 409 G FAI ++ + + R +V + P +SP + ++F+ Sbjct: 556 ASDRHNPGGGSFAIYMVHPNSTGLRRVVHSADGGRTNHPWFSPDSKRMVFTSDLAAVSAE 615 Query: 410 -----KDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG-FMD 447 ++++I+++G + ++ P W F++ Sbjct: 616 PISNPHHYQPYGEIFTINIDGSGLQRLTHNSFEDGTPSWTPHFLE 660 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 82/278 (29%), Gaps = 56/278 (20%) Query: 216 EPRFSPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 P + + ++ Y + R+ +P S +G Sbjct: 142 RPALTRDGSRLVYVSTAVPAAAPRRSWAAVYATHLPSGRATRLTPPGVADFSPAVSPSGD 201 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-------SASYSPDSSQIVFESDRE 323 A + + DL+++ T ++ D++ D + Sbjct: 202 WAAAASPGEHGWAGEVQDLRTDVYVFRTTDGSRRTLLVKNGGWPCWADDATLFFHRRDSD 261 Query: 324 GKEQLYVMQSNGSD--------QKRISQDKEASYFDPVWSPQ--GDLIAFTKFSGEKF-A 372 G +Y + SD +RI+ + F P SP G + T+ G ++ Sbjct: 262 GWYGVYRAKIEVSDDGLLSAASVERITPPGFHA-FTPAASPGAPGLVAVATRRPGSEYRH 320 Query: 373 IGVMKKDGSQ----------ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS------ 416 I V+ R + ++ P SP G + + R + G Sbjct: 321 IEVIDLSAGGGIENAAYFEMTRPVAPRAHHFNPFVSPDGARVGYHRCRGTGNGDSPLLLE 380 Query: 417 --------KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 L+ ID + P+++ D + + F+ Sbjct: 381 SLKSPASESLFRIDG--------SYPSFSPDGRRIAFV 410 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 43/207 (20%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV----------------DLQSNATE 295 R+ + S+ F+ + L +++ +++IY D S+ Sbjct: 67 RLTDGASVNYNGNFAPSSDALLFVSERNGSLNIYLSPAPPSSSSRREALQLEDGDSSPAA 126 Query: 296 RLTNTLFIN-----ISASYSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQ 343 L + + + D S++V+ S R +Y R++ Sbjct: 127 PPMPLLPWDPVALRDRPALTRDGSRLVYVSTAVPAAAPRRSWAAVYATHLPSGRATRLTP 186 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK----------DGSQERLLVEDSNLQ 393 A F P SP GD A +A V DGS+ LLV++ Sbjct: 187 PGVA-DFSPAVSPSGDWAAAASPGEHGWAGEVQDLRTDVYVFRTTDGSRRTLLVKNGGW- 244 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYS 420 P W+ +F ++D D +Y Sbjct: 245 -PCWADDAT--LFFHRRDSDGWYGVYR 268 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 59/209 (28%), Gaps = 38/209 (18%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R V S+ A RLT+ +N + +++P S ++F S+R G +Y Sbjct: 41 SRYAFDVYALPLAPSLSIPASPAAELRLTDGASVNYNGNFAPSSDALLFVSERNGSLNIY 100 Query: 330 VMQSNGSDQKR--------------------ISQDKEASYFDPVWSPQGDLIAFTK---- 365 + + S R + D A P + G + + Sbjct: 101 LSPAPPSSSSRREALQLEDGDSSPAAPPMPLLPWDPVALRDRPALTRDGSRLVYVSTAVP 160 Query: 366 ----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 G RL +P SPSG + + ++ + Sbjct: 161 AAAPRRSWAAVYATHLPSGRATRLTPPGVADFSPAVSPSGDWAAAASPGEHGWAGEVQDL 220 Query: 422 --------DLNGRNETLINTPAYASDPQW 442 +G TL+ P W Sbjct: 221 RTDVYVFRTTDGSRRTLLVKNG--GWPCW 247 >gi|332665829|ref|YP_004448617.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] gi|332334643|gb|AEE51744.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] Length = 1162 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 21/205 (10%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ S +G+ + D IYS+ L ++LTN + + +SPD +I Sbjct: 91 EGTWMSLDVSPDGQTIAFDLMGD----IYSIPLAGGKAKQLTNGMAYDTHPKWSPDGKKI 146 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F SDR G E + + D +I++D + W+P G+ + G + + Sbjct: 147 AFTSDRSGSENAWYIDFEKQDTVQITKDNDQHVQSVEWTPDGNYLI-VSKGGRNLKLFMF 205 Query: 377 KKDGSQERLLVEDS---NLQAPTWSPSGRSLIFSRKKDG------DTGSKLYSIDL-NGR 426 KDG L++ P + R + FSR+ +L + D G+ Sbjct: 206 HKDGGGGTQLIKTPETLKCIEPAFGKDSRYIWFSRRTGAWNYNAILPQYQLATFDRETGQ 265 Query: 427 NETLIN------TPAYASDPQWVGF 445 ET P ++D W+ + Sbjct: 266 VETRTERIGSAFAPTLSADGNWLVY 290 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 86/207 (41%), Gaps = 18/207 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ Q +A+ DI + L K++ N + P++S +GK+ + + Sbjct: 100 SPDGQTIAFDLM--GDIYSIPL----AGGKAKQLTNGMAYDTHPKWSPDGKKIAFTSDRS 153 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + + + +D + T ++T ++ S ++PD + ++ S +L++ +G Sbjct: 154 GSENAWYIDFEKQDTVQITKDNDQHVQSVEWTPDGNYLI-VSKGGRNLKLFMFHKDGGGG 212 Query: 339 KRISQDKEAS-YFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKKDGSQERLLVED 389 ++ + E +P + I F++ +G ++ + ++ Q E Sbjct: 213 TQLIKTPETLKCIEPAFGKDSRYIWFSRRTGAWNYNAILPQYQLATFDRETGQVETRTER 272 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTG 415 + APT S G L++ + + TG Sbjct: 273 IGSAFAPTLSADGNWLVYGTRFNEQTG 299 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 99/284 (34%), Gaps = 34/284 (11%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + +G + S + ++ + + + G + LT P++SP+ + Sbjct: 86 KLQVNEGTWMSLDVSPDGQTIAFDLMGDIYSIPLAGGKAKQLTNG-MAYDTHPKWSPDGK 144 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+A+ + D + +D + + + + ++ +G ++S + + + Sbjct: 145 KIAFTS-DRSGSENAWYIDFEKQDTVQITKDNDQHVQSVEWTPDGNYLIVS-KGGRNLKL 202 Query: 285 YSVDLQSNATERLTNTLFI--NISASYSPDSSQIVFESDREG---------KEQLYVMQS 333 + +L T I ++ DS I F S R G + QL Sbjct: 203 FMFHKDGGGGTQLIKTPETLKCIEPAFGKDSRYIWF-SRRTGAWNYNAILPQYQLATFDR 261 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-----E 388 + + ++ S F P S G+ + + E+ + +E L + Sbjct: 262 ETGQVETRT-ERIGSAFAPTLSADGNWLVYGTRFNEQTGLVKRNIQTGEEAWLAYPVQRD 320 Query: 389 DSNLQAP-------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + AP +++P + +I G K++ + ++G Sbjct: 321 EQESIAPLGVYPALSFTPDSKFVI------ASYGGKIWKLPIDG 358 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 105/304 (34%), Gaps = 52/304 (17%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS--PN-------- 222 FN + V ++ +G + RD S + P S P+ Sbjct: 294 FNEQTGLVKRNIQTGEEAWLAYPVQRD------EQESIAPLGVYPALSFTPDSKFVIASY 347 Query: 223 QQKVAYATYDDEDILRV-YLMDTRIDRAPKRIGNFR---------SMILAPRFSSNGKRA 272 K+ D + V + +D ++ P +F + I P+ S +G + Sbjct: 348 GGKIWKLPIDGGAAVNVPFEVDVELEMGPAVKFDFPISNDKTMIANQIRDPKISPDGSKL 407 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 +V +Y +D + + RLTN +SPD + I + + + +Y + Sbjct: 408 TFTV----LNRLYVMDYPNGSPRRLTNANHTEAMPIWSPDGASIAYVTWENKEGHIYKVN 463 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-------------AIGVMKKD 379 +++++ A+Y+D W + + I F + F + + D Sbjct: 464 VATGANTKLTRNG-ATYYDLGWDAKTNRIVFNYSPAQVFEDAYSPFFSSPSENLAWISAD 522 Query: 380 GSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-INTPAYA 437 G + + ++ P + R +FS K L SI +G +E + + Sbjct: 523 GGDITRIEKSNSRSNPHFVKADERIYLFSGAKG------LVSIRWDGTDEKVHLKVSGIT 576 Query: 438 SDPQ 441 + P Sbjct: 577 TFPA 580 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 104/346 (30%), Gaps = 65/346 (18%) Query: 141 GKKFFSSPASWRKIAHTIS-DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G + +P + + I D Y + G +N + + L DR+ Sbjct: 212 GTQLIKTPETLKCIEPAFGKDSRYIWFSRRTGAWNYNAILP---------QYQLATFDRE 262 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV--YLMDTRIDRAPKRIGNFR 257 + T R F P S + + Y T +E V + + Sbjct: 263 TGQVETRTE-RIGSAFAPTLSADGNWLVYGTRFNEQTGLVKRNIQTGEEAWLAYPVQRDE 321 Query: 258 SMILAP-------RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---- 306 +AP F+ + K + S I+ + + A + + + + Sbjct: 322 QESIAPLGVYPALSFTPDSKFVIASY----GGKIWKLPIDGGAAVNVPFEVDVELEMGPA 377 Query: 307 --------------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 SPD S++ F +LYVM +R++ + Sbjct: 378 VKFDFPISNDKTMIANQIRDPKISPDGSKLTFTV----LNRLYVMDYPNGSPRRLT-NAN 432 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P+WSP G IA+ + ++ I + G+ +L + W ++ Sbjct: 433 HTEAMPIWSPDGASIAYVTWENKEGHIYKVNVATGANTKLTRNGATYYDLGWDAKTNRIV 492 Query: 406 FSRKKD-----------GDTGSKLYSIDLNGRNETLINTPAYASDP 440 F+ L I +G + T I S+P Sbjct: 493 FNYSPAQVFEDAYSPFFSSPSENLAWISADGGDITRIEKSNSRSNP 538 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASD 439 + +L V + + SP G+++ F D +YSI L G + L N AY + Sbjct: 83 RKVKLQVNEGTWMSLDVSPDGQTIAF------DLMGDIYSIPLAGGKAKQLTNGMAYDTH 136 Query: 440 PQWVG 444 P+W Sbjct: 137 PKWSP 141 >gi|120596842|ref|YP_961416.1| amidohydrolase [Shewanella sp. W3-18-1] gi|120556935|gb|ABM22862.1| amidohydrolase [Shewanella sp. W3-18-1] Length = 1062 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 25/199 (12%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D IY + + + L + + YSPD I F SD + Sbjct: 58 SVSPDGKHIVFDLLGD----IYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGD 113 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKK 378 G + +++M ++G + ++++ P WSP + S + + Sbjct: 114 GGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHV 173 Query: 379 DGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYSI----D 422 G + L E N + P +SP GR + FS+ D+ + +Y I Sbjct: 174 AGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDT 233 Query: 423 LNGRNETLINTPAYASDPQ 441 G E LI A P Sbjct: 234 QTGEIEILIEGTGGAIRPT 252 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + SP+ + + + DI ++ + K + + + Sbjct: 43 EQVKVDVNEGTWMNLSVSPDGKHIVFDLL--GDIYQIPV----TGGEAKPLAQGIAWQMQ 96 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV---- 317 P +S +GK + D +I+ +D +T F + S ++SPDS +V Sbjct: 97 PVYSPDGKHIAFTSDGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKH 156 Query: 318 FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS------- 367 F + R G ++++ G + +++ + E +P +SP G I F++ Sbjct: 157 FTASRSLGAGEVWLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFH 216 Query: 368 ------GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + I + +L+E PT SP G L + ++ D S LY Sbjct: 217 YSKDSVNGIYKIKRYDTQTGEIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYL 274 Query: 421 IDL-NGRNETL 430 +DL +G L Sbjct: 275 LDLKSGETTKL 285 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 92/270 (34%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNLSVSPDGKHIVFDLLGDIYQIPVTGGEAKPLAQG-IAWQMQPVYSPDGKHIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D + +++MD + ++ +P +S + + + + + A ++ Sbjct: 110 S-DGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + + I + P SP G +A+ K + ++ ++ + L Sbjct: 229 KRYDTQTGEIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLFG 287 Query: 389 --DSNLQA--------PT--WSPSGRSLIF 406 D ++Q PT W+ + + F Sbjct: 288 ELDRDMQETWAIHGVYPTMAWTQDSKDIFF 317 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ KV + E + +++L + + +++ L P++S +GK + + Sbjct: 372 SPDGSKVTF-----EALGKIWLKSLPDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTWN 426 Query: 279 D-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D + + + + ++LT+ + ++SP+ +V+ + G L Sbjct: 427 DQDQGTVQVISAKGGKPKQLTSEPGKYVEPTFSPNGELVVYRKTQGGNLTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLV 387 Y + G ++S D + F D I F E + + DG +R+ Sbjct: 487 YKVDIKGKQNSKLSADGYQAQFG----ANADRIFFMNSSEDETPQLSSINLDGFDKRVHY 542 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 543 SSKHATEFRVSPDGEQLAFAER 564 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 73/466 (15%), Positives = 148/466 (31%), Gaps = 103/466 (22%) Query: 37 KVATNSANYSPVSIAFT--------------KFVSIDELGGKVSEVVSKDLQRSDV---- 78 ++ P++ F S + G + ++ D Sbjct: 76 QIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDGDGGDNIW-IMDAD----GKKPRT 130 Query: 79 -----FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 F L++ ++ + F SLGA G V L+ V Sbjct: 131 VTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGA-----GEVW------------LYHV 173 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + G K P + + + I + D + S+ V+GI K Sbjct: 174 AGGE---GVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKR 230 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + P SP+ K+AY DD +YL+D + K Sbjct: 231 YDTQ---TGEIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQS-SLYLLDLKSGETTKLF 286 Query: 254 GNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 G + ++ + K + I +++ + + ++ Sbjct: 287 GELDRDMQETWAIHGVYPTMAWTQDSKDIFFWAKG----KINRLNVANKTLTDIPFSVKT 342 Query: 304 N--ISASY---------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + S SPD S++ FE+ ++++ R Sbjct: 343 ELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVTFEA----LGKIWLKSLPDGKMSR 398 Query: 341 ISQ-DKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTW 397 +++ DK + P WS G I FT ++ ++ + V+ G + + L E PT+ Sbjct: 399 LTELDKNIAELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKPKQLTSEPGKYVEPTF 458 Query: 398 SPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLINTPAY 436 SP+G +++ + + G+ + LY +D+ G+ + ++ Y Sbjct: 459 SPNGELVVYRKTQGGNLTPRTWSQEPGLYKVDIKGKQNSKLSADGY 504 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 103/322 (31%), Gaps = 49/322 (15%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ ++ L EP +SP+ + Sbjct: 143 AWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRY 202 Query: 226 VAYATYDDEDILRVYLMDT-----------RIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 + ++ D Y D+ + + + P S +G + Sbjct: 203 IYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGEIEILIEGTGGAIRPTPSPDGTKLAY 262 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY----- 329 + D +Y +DL+S T +L L ++ +++ ++ K+ + Sbjct: 263 IKRDDFQSSLYLLDLKSGETTKLFGELDRDMQETWAIHGVYPTMAWTQDSKDIFFWAKGK 322 Query: 330 ------------------VMQSNGSDQKRISQDKEASYFD------PVWSPQGDLIAFTK 365 + R QD + FD SP G + F Sbjct: 323 INRLNVANKTLTDIPFSVKTELAVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVTFEA 382 Query: 366 FSGEKFAIGVMK-KDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + DG RL D N+ P WS G++++F+ D D G+ Sbjct: 383 LG----KIWLKSLPDGKMSRLTELDKNIAELYPQWSRDGKNIVFTTWNDQDQGTVQVISA 438 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G+ + L + P +P + Sbjct: 439 KGGKPKQLTSEPGKYVEPTFSP 460 Score = 38.8 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 40/103 (38%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIF----------------------------------- 406 Q ++ V + + SP G+ ++F Sbjct: 44 QVKVDVNEGTWMNLSVSPDGKHIVFDLLGDIYQIPVTGGEAKPLAQGIAWQMQPVYSPDG 103 Query: 407 ---SRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + DGD G ++ +D +G+ + + + P W Sbjct: 104 KHIAFTSDGDGGDNIWIMDADGKKPRTVTKETFRLLNSPAWSP 146 >gi|295689246|ref|YP_003592939.1| amidohydrolase [Caulobacter segnis ATCC 21756] gi|295431149|gb|ADG10321.1| amidohydrolase [Caulobacter segnis ATCC 21756] Length = 1055 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 98/258 (37%), Gaps = 18/258 (6%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +G F+ ++ S V+ + D+ A + + SP+ + VA Sbjct: 10 SRRGLFSLGGGAIAVSGVATLTPPVARAADQPLAADSSPVTATEGTNICATVSPDGRTVA 69 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + D+ + + +R+ + I P +S +G +D ++++ Sbjct: 70 F------DVYAMLWLVPIEGGPARRLTDEIYEIAQPDWSPDGSTLAFQSYRDGNFHVWTI 123 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + T F +SPD I F SDR G+ ++++ S Sbjct: 124 GADGRGLMQRTKGAFDCREPRWSPDGKTIAFSSDRGGRYGVHLLDVASGAITPFST-GPG 182 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL--------VEDSNLQAPTWSP 399 F+P WSP G + FT +K I V DG++ + ++L +P ++P Sbjct: 183 DEFEPSWSPDGKSVVFTV---DKVRIDVQGLDGARRTVAKVKPSADRFNAASLASPAFTP 239 Query: 400 SGRSLIFSRKKDGDTGSK 417 GR ++F+ ++G + Sbjct: 240 DGRDVVFTAIENGKAELR 257 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T T NI A+ SPD + F+ L+++ G +R++ D+ P WSP Sbjct: 49 VTATEGTNICATVSPDGRTVAFDV----YAMLWLVPIEGGPARRLT-DEIYEIAQPDWSP 103 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTG 415 G +AF + F + + DG + + + P WSP G+++ FS + G G Sbjct: 104 DGSTLAFQSYRDGNFHVWTIGADGRGLMQRTKGAFDCREPRWSPDGKTIAFSSDRGGRYG 163 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVG 444 L + +G P +P W Sbjct: 164 VHLLDV-ASGAITPFSTGPGDEFEPSWSP 191 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 38/302 (12%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 D + ++ + A R A + + +L+ ++ + ++ Sbjct: 238 TPDGRDVVFTAIENGKAELRGAAGVVVAGEDVFPFRPSWLADGTMLYTADGKIKLRKQDG 297 Query: 193 LCVMDRDGAN-----IRYLTPSRDQI---------LFEPRFSPNQQKVAYATYDDEDILR 238 L A RY+ SRD + + P SP+ ++V + + Sbjct: 298 LTGAVAFAATVPVLTPRYVKKSRDFLSAKTRPVVGVGSPALSPDGRQVVF-----RALND 352 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 +YL+D A I + + P +S +GK S K +DI+ D S + +LT Sbjct: 353 LYLLDIGGGPATALIKDAFYKV-DPAWSPDGKTLAYSTDKGGKLDIWLRDTASGESRQLT 411 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 +S+++S D I F + G L+V+ +R+ P W P Sbjct: 412 RFDGAAVSSAWSRDGKSIAFLNQNGG---LFVVDVASGQTRRV-YGDLWEPGKPTWGPGD 467 Query: 359 DLIAF-------TKFSGEKFAIGVMKKDGSQER---LLVE----DSNLQAPTWSPSGRSL 404 IA+ +F I + + + +L + P WSP G+SL Sbjct: 468 RTIAYAAFKPYSARFREGLSEILTVDVESGKGTYQPILPDRSLGTRGDDGPVWSPDGKSL 527 Query: 405 IF 406 + Sbjct: 528 AY 529 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 98/283 (34%), Gaps = 28/283 (9%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D + T S L V N L ++D G +P +S Sbjct: 321 DFLSAKTRPVVGVGSPALSPDGRQVVFRALNDLYLLDI-GGGPATALIKDAFYKVDPAWS 379 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ + +AY+T D L ++L DT +++ F ++ +S +GK Q Sbjct: 380 PDGKTLAYST-DKGGKLDIWLRDTASGE-SRQLTRFDGAAVSSAWSRDGKSIAFLNQNGG 437 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------REGKEQLYVMQS 333 ++ VD+ S T R+ L+ ++ P I + + REG ++ + Sbjct: 438 ---LFVVDVASGQTRRVYGDLWEPGKPTWGPGDRTIAYAAFKPYSARFREGLSEILTVDV 494 Query: 334 NGSDQ--KRISQD---KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS--QERLL 386 + I D PVWSP G +A+ + + + + G Sbjct: 495 ESGKGTYQPILPDRSLGTRGDDGPVWSPDGKSLAYV--FASRLHVSPVDETGKLLGPPKA 552 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + D A +WS G SLI+ +L I G Sbjct: 553 LNDELTDAVSWSGDGNSLIYVS------AGELRLISAGGGAPR 589 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 56/364 (15%), Positives = 111/364 (30%), Gaps = 87/364 (23%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A ++D+IY+ + S + F S + + + DG + T Sbjct: 86 ARRLTDEIYEIAQPDWSPDGSTLAFQSYRDGN----FHVWTIGADGRGLMQRTKG-AFDC 140 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EPR+SP+ + +A+++ D V+L+D P +S +GK + Sbjct: 141 REPRWSPDGKTIAFSS-DRGGRYGVHLLDVASGAIT-PFSTGPGDEFEPSWSPDGKSVVF 198 Query: 275 -------------------------------------SVQKDEAMDIYSVDLQSNATERL 297 + D +++ A R Sbjct: 199 TVDKVRIDVQGLDGARRTVAKVKPSADRFNAASLASPAFTPDGRDVVFTAIENGKAELRG 258 Query: 298 TNT---LFINISA---SYSPDSSQIVFESDREGKEQLYVMQSNGSDQ------KRIS--- 342 ++ S+ D + +++ +D GK +L ++ Sbjct: 259 AAGVVVAGEDVFPFRPSWLADGT-MLYTAD--GKIKLRKQDGLTGAVAFAATVPVLTPRY 315 Query: 343 -----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 P SP G + F + + ++ G L++D+ Sbjct: 316 VKKSRDFLSAKTRPVVGVGSPALSPDGRQVVFRALND----LYLLDIGGGPATALIKDAF 371 Query: 392 LQA-PTWSPSGRSLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYASDPQWV------ 443 + P WSP G++L +S K G ++ D +G + L A W Sbjct: 372 YKVDPAWSPDGKTLAYSTDKGGK--LDIWLRDTASGESRQLTRFDGAAVSSAWSRDGKSI 429 Query: 444 GFMD 447 F++ Sbjct: 430 AFLN 433 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 105/332 (31%), Gaps = 52/332 (15%) Query: 145 FSSPASWRKIAHTI---SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 FSS R H + S I TG +F +SVV + K + V DGA Sbjct: 154 FSSDRGGRYGVHLLDVASGAITPFSTGPGDEFEPSWSPDGKSVVFTVDKVRIDVQGLDGA 213 Query: 202 NI------RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 L P F+P+ + V + ++ A + Sbjct: 214 RRTVAKVKPSADRFNAASLASPAFTPDGRDVVFTAIENGKAE-------LRGAAGVVVAG 266 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT------ERLTNT---LFIN-- 304 P + ++G D + + D + A LT + Sbjct: 267 EDVFPFRPSWLADGTML---YTADGKIKLRKQDGLTGAVAFAATVPVLTPRYVKKSRDFL 323 Query: 305 ----------ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 S + SPD Q+VF + LY++ G + +D DP W Sbjct: 324 SAKTRPVVGVGSPALSPDGRQVVFRA----LNDLYLLDIGGGPATALIKDAFYKV-DPAW 378 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G +A++ G K I + + R L D + WS G+S+ F + G Sbjct: 379 SPDGKTLAYSTDKGGKLDIWLRDTASGESRQLTRFDGAAVSSAWSRDGKSIAFLNQNGG- 437 Query: 414 TGSKLYSIDLNGRNETLINTPAYAS-DPQWVG 444 L+ +D+ + + P W Sbjct: 438 ----LFVVDVASGQTRRVYGDLWEPGKPTWGP 465 >gi|221632929|ref|YP_002522151.1| acylaminoacyl-peptidase [Thermomicrobium roseum DSM 5159] gi|221156779|gb|ACM05906.1| acylaminoacyl-peptidase [Thermomicrobium roseum DSM 5159] Length = 309 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 27/238 (11%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-------------MILA 262 R+SP+ ++VA+ D +Y+ DT + N L+ Sbjct: 51 WARWSPDGRRVAFVRLGDA-YSDLYIADTSTGEIRQLTRNRPPFTPGSYEYVQNAVWALS 109 Query: 263 PRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERL--TNTLFINIS-ASYSPDSSQIVF 318 P +S +G+R + ++ + ++ + E + T L N+ ++SPD S+IVF Sbjct: 110 PAWSPDGQRLVYVSDRNTLKNFLWLIPSAGGTPELIQATTRLGDNVDQPAFSPDGSRIVF 169 Query: 319 ---ESDREGKEQ---LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + +G ++ L+++ + + Q + Y P WSP G I + GE Sbjct: 170 IHRVTREDGLQRRTDLWIVDLRSGNLTPLVQGGDGQY-APAWSPDGQWIVYVGRHGESND 228 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR-KKDGDTGSKL-YSIDLNGRNE 428 + ++ G Q + + + +PTWSP GR++ + + ++DG L I +GR + Sbjct: 229 LFLVPAMGGQPIQITDSGVVASPTWSPDGRAIAYLQLERDGFAVYVLELRIGADGRPQ 286 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 27/224 (12%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ-------------ILFEPRFSPN 222 R+ FV G + L + D IR LT +R P +SP+ Sbjct: 60 RVAFVRL----GDAYSDLYIADTSTGEIRQLTRNRPPFTPGSYEYVQNAVWALSPAWSPD 115 Query: 223 QQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---SVQ 277 Q++ Y + + ++ L + + + P FS +G R + + Sbjct: 116 GQRLVYVSDRNTLKNFLWLIPSAGGTPELIQATTRLGDNVDQPAFSPDGSRIVFIHRVTR 175 Query: 278 KDE---AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 +D D++ VDL+S L + ++SPD IV+ L+++ + Sbjct: 176 EDGLQRRTDLWIVDLRSGNLTPLVQGGDGQYAPAWSPDGQWIVYVGRHGESNDLFLVPAM 235 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 G +I+ P WSP G IA+ + + FA+ V++ Sbjct: 236 GGQPIQIT--DSGVVASPTWSPDGRAIAYLQLERDGFAVYVLEL 277 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 30/186 (16%) Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE--- 346 ++ T RL L A +SPD ++ F + LY+ ++ + +++++++ Sbjct: 36 ENGKTRRLLQ-LGDAAWARWSPDGRRVAFVRLGDAYSDLYIADTSTGEIRQLTRNRPPFT 94 Query: 347 -ASY---------FDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVEDS----N 391 SY P WSP G + + + ++ G L+ + N Sbjct: 95 PGSYEYVQNAVWALSPAWSPDGQRLVYVSDRNTLKNFLWLIPSAGGTPELIQATTRLGDN 154 Query: 392 LQAPTWSPSGRSLIF----SRKKDGDTGSKLYSIDLNGRNETLINT-------PAYASDP 440 + P +SP G ++F +R+ + L+ +DL N T + PA++ D Sbjct: 155 VDQPAFSPDGSRIVFIHRVTREDGLQRRTDLWIVDLRSGNLTPLVQGGDGQYAPAWSPDG 214 Query: 441 QWVGFM 446 QW+ ++ Sbjct: 215 QWIVYV 220 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 28/137 (20%) Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV------ED 389 +R+ Q +A++ WSP G +AF + + + + R L Sbjct: 38 GKTRRLLQLGDAAWA--RWSPDGRRVAFVRLGDAYSDLYIADTSTGEIRQLTRNRPPFTP 95 Query: 390 SNLQ---------APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--------- 431 + + +P WSP G+ L++ ++ + L+ I G LI Sbjct: 96 GSYEYVQNAVWALSPAWSPDGQRLVYVSDRN-TLKNFLWLIPSAGGTPELIQATTRLGDN 154 Query: 432 -NTPAYASDPQWVGFMD 447 + PA++ D + F+ Sbjct: 155 VDQPAFSPDGSRIVFIH 171 >gi|91791380|ref|YP_561031.1| amidohydrolase [Shewanella denitrificans OS217] gi|91713382|gb|ABE53308.1| amidohydrolase [Shewanella denitrificans OS217] Length = 1065 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + S +G+ + + D IY + + + L + + YSPD I Sbjct: 53 EGTWMNVSVSPDGEHIVFDLLGD----IYQMPISGGDAKPLAKGIAWQMQPVYSPDGKYI 108 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKF 371 F SD +G + ++VM ++GS+ ++++ P WSP + S Sbjct: 109 AFTSDEDGGDNIWVMNADGSNPHPVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAG 168 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + G + L E N Q P +SP GR + FS+ D+ S +Y Sbjct: 169 EVWLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVSGIY 228 Query: 420 SI----DLNGRNETLINTPAYASDPQ 441 I G E L+ A P Sbjct: 229 KIKRYDTQTGDIEILVEGTGGAIRPT 254 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 30/228 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + D +Y M K + + + P +S +GK + Sbjct: 60 SVSPDGEHIVFDLLGD-----IYQMPI-SGGDAKPLAKGIAWQMQPVYSPDGKYIAFTSD 113 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 +D +I+ ++ + +T F + S ++SPDS +V F + R G ++++ Sbjct: 114 EDGGDNIWVMNADGSNPHPVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLY 173 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + I Sbjct: 174 HVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVSGIYKIKRY 233 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +LVE PT SP G+ L + ++ S LY +DL Sbjct: 234 DTQTGDIEILVEGTGGAIRPTPSPDGKKLAYIKRDG--FQSSLYLLDL 279 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + M G + + L +P +SP+ + +A+ Sbjct: 53 EGTWMNVSVSPDGEHIVFDLLGDIYQMPISGGDAKPLAKG-IAWQMQPVYSPDGKYIAFT 111 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + +D + + P FR + +P +S + + + + + A ++ Sbjct: 112 SDEDGGDNIWVMNADGSNPHPVTKETFRLLN-SPAWSPDSQYLVARKHFTASRSLGAGEV 170 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 171 WLYHVAGGEGVKLTERPNDQKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVSGIYKI 230 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + I + P SP G +A+ K G + ++ ++ + L Sbjct: 231 KRYDTQTGDIE-ILVEGTGGAIRPTPSPDGKKLAYIKRDGFQSSLYLLDLQSGETNKLYA 289 Query: 389 --DSNLQA--------PT--WSPSGRSLIF 406 D ++Q P+ W+ S++F Sbjct: 290 ELDRDMQETWAIHGVYPSMAWTQDNSSIVF 319 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 120/336 (35%), Gaps = 49/336 (14%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLT--PSR 210 H ++ + ++ + +S+ L + + + + G LT P+ Sbjct: 130 PHPVTKETFRLLNSPAWSPDSQYLVARKHFTASRSLGAGEVWLYHVAGGEGVKLTERPND 189 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID-----------RAPKRIGNFRSM 259 + L EP +SP+ + + ++ D Y D+ + + Sbjct: 190 QKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVSGIYKIKRYDTQTGDIEILVEGTGG 249 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SAS 308 + P S +GK+ + +Y +DLQS T +L L ++ S + Sbjct: 250 AIRPTPSPDGKKLAYIKRDGFQSSLYLLDLQSGETNKLYAELDRDMQETWAIHGVYPSMA 309 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQK-------------RISQDKEASYFD---- 351 ++ D+S IVF + + +L + + SD R +Q+ + FD Sbjct: 310 WTQDNSSIVFWA-KGKINKLKLKDLSVSDIPFKVKAQLDIQPSVRFTQNLDQDKFDVKML 368 Query: 352 --PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR 408 SP G + F K I ++ D + L +D N P WS G+ ++F+ Sbjct: 369 RMAQVSPDGKKVVFEAL--GKLWIRDIENDTQERLTRLDDDINELFPQWSRDGKQIVFTT 426 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D D G+ G+ L + P +P + Sbjct: 427 WNDQDQGTVSLISARGGKATRLTSEPGKYVEPTFAP 462 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 107/271 (39%), Gaps = 33/271 (12%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGAN---IRYLTPSRDQILFEPRFSPNQQKVAYAT 230 R+ VS + + + RD N R D P++S + +++ + T Sbjct: 367 MLRMAQVSPDGKKVVFEALGKLWIRDIENDTQERLTRLDDDINELFPQWSRDGKQIVFTT 426 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD------- 283 ++D+D V L+ R +A R+ + + P F+ NG+ + + Sbjct: 427 WNDQDQGTVSLISARGGKAT-RLTSEPGKYVEPTFAPNGQFVVYRKANGGNITPRTWSQE 485 Query: 284 --IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 +Y VD++ ++T A + D+ +I F ++ QL ++ +G D KR+ Sbjct: 486 TGLYKVDVKGKQNTKIT---AEGYQAQFGADTDRIFFM-EQGETPQLSSIRIDGFD-KRV 540 Query: 342 SQDKEASYFDPVWSPQGDLIAF--------TKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 E + + SP G+ +AF T F+ I + K + + + + Sbjct: 541 HYTSEHA-TEFRVSPDGEHLAFAERFRVYVTPFAKHGETIAIGPKASNLPVIQLSTRAGE 599 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + +W + +L ++ G +LY ++ Sbjct: 600 SISWGNNSDNLYWT------LGPELYQAKVD 624 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 94/253 (37%), Gaps = 43/253 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++ + + + + I ++ L D + P ++ + + RF Sbjct: 309 AWTQDNSSIVF--WAKGKINKLKLKDLSVSDIPFKVKAQLDIQPSVRFTQNLDQDKFDVK 366 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 S +GK+ + ++ D++++ ERLT + + +S D QI Sbjct: 367 MLRMAQVSPDGKKVVFEA----LGKLWIRDIENDTQERLTRLDDDINELFPQWSRDGKQI 422 Query: 317 VFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF---- 371 VF + + + + ++ + G R++ + Y +P ++P G + + K +G Sbjct: 423 VFTTWNDQDQGTVSLISARGGKATRLTSE-PGKYVEPTFAPNGQFVVYRKANGGNITPRT 481 Query: 372 -----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + G Q + + + + F + +L SI ++G Sbjct: 482 WSQETGLYKVDVKGKQNTKITAEGYQA--QFGADTDRIFFMEQ---GETPQLSSIRIDGF 536 Query: 427 NETLINTPAYASD 439 ++ + T +A++ Sbjct: 537 DKRVHYTSEHATE 549 >gi|320104230|ref|YP_004179821.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] gi|319751512|gb|ADV63272.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] Length = 327 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYL----MDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P +S + K+ +A+ + + ++ D P R+ + P ++ +G+R Sbjct: 158 WPNWSADGSKLVFASTHEGNQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPDGQR 217 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + +++ DL+ + ERLT I+ S SPD I F + REG +++VM Sbjct: 218 IVFVTDRWGGLELAITDLEGHRVERLTRQPGIDDSPDVSPDGRWIAFTTFREGMAEVFVM 277 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +GS+ + +S++ E P W+P G + F ++ + Sbjct: 278 GIDGSNPRNLSRNPEGHDMHPRWTPDGRGVTFCTQRQGRWEL 319 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 27/273 (9%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGA------NIRYLTPSRDQILFEPRFSPNQQKVA-- 227 R+++ S G I LC + D + L P RD F+ SP Q Sbjct: 58 RLIYASMEPDGGSIH--LCQLQVDHPFDATRRQPKRLFPDRDDPEFQAVPSPQSQSPWLA 115 Query: 228 ---YATYDDEDILRVYLMDTRIDRAPKR--IGNFRSMILA---PRFSSNGKRALISVQKD 279 + L + D + R +GN + P +S++G + + + + Sbjct: 116 VTRVTRSGTQGDLDLVAFDLTSNPPRSRGIMGNVEGRLSHQEWPNWSADGSKLVFASTHE 175 Query: 280 EAMDIYSV------DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +I+ + D + R+T I+ ++PD +IVF +DR G +L + Sbjct: 176 GNQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPDGQRIVFVTDRWGGLELAITDL 235 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SN 391 G +R+++ + P SP G IAFT F + VM DGS R L + + Sbjct: 236 EGHRVERLTR-QPGIDDSPDVSPDGRWIAFTTFREGMAEVFVMGIDGSNPRNLSRNPEGH 294 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 P W+P GR + F ++ G ++ N Sbjct: 295 DMHPRWTPDGRGVTFCTQRQGRWELVTLAVPTN 327 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 120/299 (40%), Gaps = 41/299 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI- 236 L +S V +G + +G +R+ ++ F P +S + +++ YA+ + + Sbjct: 13 LALSLMVWTGGTPSGRAEDRWEGPGVRHTFDGLEK--FRPVWSADGRRLIYASMEPDGGS 70 Query: 237 -----LRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQK------DEAMDI 284 L+V R PKR+ R S + ++V + +D+ Sbjct: 71 IHLCQLQVDHPFDATRRQPKRLFPDRDDPEFQAVPSPQSQSPWLAVTRVTRSGTQGDLDL 130 Query: 285 YSVDLQSNATE----------RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM--- 331 + DL SN RL++ + ++S D S++VF S EG ++++ + Sbjct: 131 VAFDLTSNPPRSRGIMGNVEGRLSHQEW----PNWSADGSKLVFASTHEGNQEIHWIAWS 186 Query: 332 ---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLV 387 + S R+++ P W+P G I F + + +G ERL Sbjct: 187 DDPDAPDSQPHRVTR-HPGIDTQPCWTPDGQRIVFVTDRWGGLELAITDLEGHRVERLTR 245 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP--AYASDPQWVG 444 + +P SP GR + F+ ++G ++++ + ++G N ++ + P+W Sbjct: 246 QPGIDDSPDVSPDGRWIAFTTFREG--MAEVFVMGIDGSNPRNLSRNPEGHDMHPRWTP 302 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 65/164 (39%), Gaps = 4/164 (2%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIR-YLTPSRDQILFEPRFSPNQQKVAYATYDD 233 S+++F S + I D D + + + I +P ++P+ Q++ + T Sbjct: 166 SKLVFASTHEGNQEIHWIAWSDDPDAPDSQPHRVTRHPGIDTQPCWTPDGQRIVFVTDRW 225 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + + +R+ + +P S +G+ + ++ +++ + + + Sbjct: 226 GGLE--LAITDLEGHRVERLTRQPGIDDSPDVSPDGRWIAFTTFREGMAEVFVMGIDGSN 283 Query: 294 TERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 L+ ++ ++PD + F + R+G+ +L + + Sbjct: 284 PRNLSRNPEGHDMHPRWTPDGRGVTFCTQRQGRWELVTLAVPTN 327 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 4/83 (4%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNS----LCVMDRDGANIRYLTPSRDQILFEPR 218 + +T + G +S + ++ + VM DG+N R L+ + + PR Sbjct: 240 VERLTRQPGIDDSPDVSPDGRWIAFTTFREGMAEVFVMGIDGSNPRNLSRNPEGHDMHPR 299 Query: 219 FSPNQQKVAYATYDDEDILRVYL 241 ++P+ + V + T V L Sbjct: 300 WTPDGRGVTFCTQRQGRWELVTL 322 >gi|298242339|ref|ZP_06966146.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297555393|gb|EFH89257.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 682 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 107/329 (32%), Gaps = 87/329 (26%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFR 257 NI R Q + PR SP+ ++VAY +D Y I +R Sbjct: 4 NITIEDLYRMQFIDRPRISPDGKQVAYVVTRIDDKKHAYRSSIWISPTEGGEARRFTQET 63 Query: 258 SMILAPRFSSNGKRALISVQKD------------------EAMDIYSVDLQSNATERLTN 299 + AP +S +G+ +++ + I+ + +LT Sbjct: 64 ELTSAPTWSPDGRWLAFVAKRESSDQPSTTEKKEQKKPGKDKPQIWVMPTDGGEARQLTF 123 Query: 300 TLFINISASYSPDSSQIVFESDRE---------------------------------GKE 326 S ++SPD ++F + + Sbjct: 124 MEHGASSPAWSPDGKHLLFSAQVGPADEETEDGKALPKVHVIDQLWYRLDGVGFIYERRA 183 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDG 380 L+++ G + ++++ D + + D WSP G I FT E I V+ Sbjct: 184 HLFLIPREGGEPQQLT-DGDWNDGDAAWSPDGKQITFTSDRNEERWRIPGADIYVLALQD 242 Query: 381 ----SQERLLVEDS-NLQAPTWSPSGRSLIF--SRKKDGDTGSKLYSIDLN---GRNETL 430 + R+L + S +P+WS G+ + F S+K + LY+I + G + L Sbjct: 243 NKVVGEPRVLTDGSMGCASPSWSADGQQIAFIASKKVGSAGHAYLYTIGASAEKGEPKNL 302 Query: 431 IN---------TPAYASD------PQWVG 444 T + D P W Sbjct: 303 TPEFEGTALDFTNSDLGDEHLMPQPAWSA 331 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 112/343 (32%), Gaps = 87/343 (25%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD---- 233 + ++S+ + +G R T + + P +SP+ + +A+ + Sbjct: 31 VVTRIDDKKHAYRSSIWISPTEGGEARRFTQETE-LTSAPTWSPDGRWLAFVAKRESSDQ 89 Query: 234 -------------EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 +D ++++M T +++ +P +S +GK L S Q Sbjct: 90 PSTTEKKEQKKPGKDKPQIWVMPTD-GGEARQLTFMEHGASSPAWSPDGKHLLFSAQVGP 148 Query: 281 AMD---------------------------------IYSVDLQSNATERLTNTLFINISA 307 A + ++ + + ++LT+ + + A Sbjct: 149 ADEETEDGKALPKVHVIDQLWYRLDGVGFIYERRAHLFLIPREGGEPQQLTDGDWNDGDA 208 Query: 308 SYSPDSSQIVFESDRE------GKEQLYVMQSNGS---DQKRISQDKEASYFDPVWSPQG 358 ++SPD QI F SDR +YV+ + + R+ D P WS G Sbjct: 209 AWSPDGKQITFTSDRNEERWRIPGADIYVLALQDNKVVGEPRVLTDGSMGCASPSWSADG 268 Query: 359 DLIAF--TKFSGEKFAIGVM----KKDGSQERLLV----------------EDSNLQAPT 396 IAF +K G + + + + L ++ + P Sbjct: 269 QQIAFIASKKVGSAGHAYLYTIGASAEKGEPKNLTPEFEGTALDFTNSDLGDEHLMPQPA 328 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLN--GRNETLINTPAYA 437 WS G++L G S++Y+I E TP Sbjct: 329 WSADGKTLYVLSSHRG--ASRIYAISTTNGAGKEPPTVTPGNV 369 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 78/236 (33%), Gaps = 33/236 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY-------- 240 + L ++ R+G + LT D + +SP+ +++ + + +E+ R+ Sbjct: 181 RRAHLFLIPREGGEPQQLTDG-DWNDGDAAWSPDGKQITFTSDRNEERWRIPGADIYVLA 239 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD----EAMDIYSV--DLQSNAT 294 L D ++ P+ + + +P +S++G++ K +Y++ + Sbjct: 240 LQDNKVVGEPRVLTDGSMGCASPSWSADGQQIAFIASKKVGSAGHAYLYTIGASAEKGEP 299 Query: 295 ERLT---NTLFINI------------SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + LT ++ ++S D + S G ++Y + + K Sbjct: 300 KNLTPEFEGTALDFTNSDLGDEHLMPQPAWSADGKTLYVLSSHRGASRIYAISTTNGAGK 359 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA---IGVMKKDGSQERLLVEDSNL 392 + +S F + I V + E + N Sbjct: 360 EPPTVTPGNVHVRDFSLDHSKQIFAMNVADATHPQEIFVRSAKTNGELRKITGFND 415 Score = 41.5 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 395 PTWSPSGRSLIFSRKKDGD----TGSKLYSIDLNGRNET-------LINTPAYASDPQWV 443 P SP G+ + + + D S ++ G L + P ++ D +W+ Sbjct: 19 PRISPDGKQVAYVVTRIDDKKHAYRSSIWISPTEGGEARRFTQETELTSAPTWSPDGRWL 78 Query: 444 GFM 446 F+ Sbjct: 79 AFV 81 >gi|170724385|ref|YP_001758411.1| amidohydrolase [Shewanella woodyi ATCC 51908] gi|169809732|gb|ACA84316.1| amidohydrolase [Shewanella woodyi ATCC 51908] Length = 1069 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + S +GK + D DIY + ++ + L + + YSPD I Sbjct: 53 EGTWMNVSVSPDGKNIVF----DMLGDIYQMPIEGGEAKVLAEGIAWQMQPVYSPDGKYI 108 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KFSGEKF 371 F SD +G + +++M+++GS + ++++ P WSP + +T S Sbjct: 109 AFTSDEDGGDNIWIMEADGSKPRAVTEETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAG 168 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + G + L E N Q P +SP GR + FS+ D+ +Y Sbjct: 169 EVWMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIY 228 Query: 420 SI----DLNGRNETLINTPAYASDPQ 441 I G E LI A P Sbjct: 229 KIKRYDTQTGDIEVLIEGTGGAIRPT 254 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + + + D +Y M K + + + P +S +GK + Sbjct: 60 SVSPDGKNIVFDMLGD-----IYQMPIE-GGEAKVLAEGIAWQMQPVYSPDGKYIAFTSD 113 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 +D +I+ ++ + +T F + S ++SPDS +V + R G ++++ Sbjct: 114 EDGGDNIWIMEADGSKPRAVTEETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEVWMY 173 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + +++ +++ +P +SP G I F++ + + I Sbjct: 174 HVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKIKRY 233 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ S LY +DL +G+ + L Sbjct: 234 DTQTGDIEVLIEGTGGAIRPTPSPDGTKLAYIKRDG--FQSSLYLLDLKSGKIDKL 287 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 114/310 (36%), Gaps = 35/310 (11%) Query: 122 DRLRVEFRLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN--SRI 177 D + L D+K K ++ GK +W H + + + E+ F +I Sbjct: 268 DGFQSSLYLLDLKSGKIDKLYGKLDRDMQETW--AIHGVYPSMSWTSDNEEIVFWAGGKI 325 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ------ILFEPRFSPNQQKVAYATY 231 + S D T + DQ +L + SP+ +KV Y Sbjct: 326 NKLDVESKSVKQIPFSIKTKLDVQPAVRFTQNLDQDKFDVKMLRMAQVSPDGKKVVY--- 382 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALISVQKDEAM-DIYSVD 288 + L + + + R+ S L P++S +GK + S DE I V+ Sbjct: 383 ---EALGKLWVKSLSNGKRTRLTKLDSELRELFPQWSRDGKSIVFSTWDDEEQGSIRIVN 439 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQLYVMQSNGSDQK 339 +++ + LT + ++SPD S +V+ + G LY + G + Sbjct: 440 VRNKRVKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPRTWSQETGLYRVDIKGKESI 499 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 +I+ D + P + D + F GE + + +G Q+R+ + SP Sbjct: 500 KITPDG----YQPQFGADSDRVYFMDH-GETPELASINLNGFQKRVHYTSKHATEFRVSP 554 Query: 400 SGRSLIFSRK 409 G+ L F+ + Sbjct: 555 DGKQLAFAER 564 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 117/314 (37%), Gaps = 57/314 (18%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + D +I L + P SP+ K+AY D +Y Sbjct: 218 HYSKDSVKGIYKIKRYDTQTGDIEVLIEGTGGAI-RPTPSPDGTKLAYIKRD-GFQSSLY 275 Query: 241 LMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 L+D + + K G + + ++S+ + + I +D++ Sbjct: 276 LLDLKSGKIDKLYGKLDRDMQETWAIHGVYPSMSWTSDNEEIVFWA----GGKINKLDVE 331 Query: 291 SNATERLTNT--LFINISASY---------------------SPDSSQIVFESDREGKEQ 327 S + +++ + +++ + SPD ++V+E+ + Sbjct: 332 SKSVKQIPFSIKTKLDVQPAVRFTQNLDQDKFDVKMLRMAQVSPDGKKVVYEA----LGK 387 Query: 328 LYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQERL 385 L+V + + R+++ D E P WS G I F+ + E + +I ++ + + Sbjct: 388 LWVKSLSNGKRTRLTKLDSELRELFPQWSRDGKSIVFSTWDDEEQGSIRIVNVRNKRVKT 447 Query: 386 LV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLIN----T 433 L E PT+SP G +++ + K G + LY +D+ G+ I Sbjct: 448 LTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPRTWSQETGLYRVDIKGKESIKITPDGYQ 507 Query: 434 PAYASDPQWVGFMD 447 P + +D V FMD Sbjct: 508 PQFGADSDRVYFMD 521 Score = 93.5 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 104/296 (35%), Gaps = 42/296 (14%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + M +G + L +P +SP+ + +A+ Sbjct: 53 EGTWMNVSVSPDGKNIVFDMLGDIYQMPIEGGEAKVLAEG-IAWQMQPVYSPDGKYIAFT 111 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D++ +++M+ + ++ +P +S + + + + + A ++ Sbjct: 112 S-DEDGGDNIWIMEADGSKPRAVTEETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEV 170 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 171 WMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKI 230 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + + + P SP G +A+ K G + ++ ++ + L Sbjct: 231 KRYDTQTGDIEVLI-EGTGGAIRPTPSPDGTKLAYIKRDGFQSSLYLLDLKSGKIDKLYG 289 Query: 389 --DSNLQ----------APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 D ++Q + +W+ ++F G K+ +D+ ++ I Sbjct: 290 KLDRDMQETWAIHGVYPSMSWTSDNEEIVFWA------GGKINKLDVESKSVKQIP 339 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 112/328 (34%), Gaps = 61/328 (18%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 145 AWSPDSQYLVARKHYTGSRSLGAGEVWMYHVAGGEGVKLTERPNEQKDLGEPAYSPDGRY 204 Query: 226 VA------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + Y+ + I ++ DT+ + + + P S +G + Sbjct: 205 IYFSQDATPGKTFHYSKDSVKGIYKIKRYDTQTGD-IEVLIEGTGGAIRPTPSPDGTKLA 263 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDSSQIVFESDR 322 + +Y +DL+S ++L L ++ S S++ D+ +IVF + Sbjct: 264 YIKRDGFQSSLYLLDLKSGKIDKLYGKLDRDMQETWAIHGVYPSMSWTSDNEEIVFWA-- 321 Query: 323 EGKEQLYVMQSNGSDQKRI----------------SQDKEASYFD------PVWSPQGDL 360 ++ + K+I +Q+ + FD SP G Sbjct: 322 --GGKINKLDVESKSVKQIPFSIKTKLDVQPAVRFTQNLDQDKFDVKMLRMAQVSPDGKK 379 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 + + + V + L + P WS G+S++FS D + GS Sbjct: 380 VVYEALG----KLWVKSLSNGKRTRLTKLDSELRELFPQWSRDGKSIVFSTWDDEEQGS- 434 Query: 418 LYSIDL-NGRNETLINTPAYASDPQWVG 444 + +++ N R +TL P +P + Sbjct: 435 IRIVNVRNKRVKTLTKEPGKYVEPTFSP 462 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G I F I M +G + ++L E Q P +SP G+ Sbjct: 52 TEGTWMNVSVSPDGKNIVFDMLGD----IYQMPIEGGEAKVLAEGIAWQMQPVYSPDGKY 107 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G ++ ++ +G + + + P W Sbjct: 108 IAFTSDEDG--GDNIWIMEADGSKPRAVTEETFRLLNSPAWSP 148 >gi|115380583|ref|ZP_01467536.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115362407|gb|EAU61689.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 655 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ S G + + D +Y++ + + LT ++ YSPD + I Sbjct: 43 EGTWMSVDVSPKGDELVFDLLGD----LYTLPIAGGEAKALTTGAAWDMQPRYSPDGASI 98 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FTKFSG-EKF 371 F SDR G + L++M+ +GSD + ++Q+ P WSP + F+ Sbjct: 99 AFTSDRGGGDNLWIMKRDGSDSRPVTQESFRLLNSPTWSPDSQYLVARKHFSSRRSLGAG 158 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + + G + L E N Q P +SP GR L FS+ + D ++Y Sbjct: 159 EMWLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKVFEYNKDPNGQIY 218 Query: 420 SI---DLNGRN-ETLINTPAYASDPQ 441 I +L + E I P + P Sbjct: 219 VIQRLNLETKELEPFITGPGGSVRPT 244 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 30/234 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP ++ + D+L K + + + PR+S +G + + Sbjct: 52 SPKGDELVF------DLLGDLYTLPIAGGEAKALTTGAAWDMQPRYSPDGASIAFTSDRG 105 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +++ + + + +T F + S ++SPDS +V F S R G ++++ Sbjct: 106 GGDNLWIMKRDGSDSRPVTQESFRLLNSPTWSPDSQYLVARKHFSSRRSLGAGEMWLYHR 165 Query: 334 NGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVMKK 378 G + ++++ +P +SP G + F++ +G+ + I + Sbjct: 166 AGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKVFEYNKDPNGQIYVIQRLNL 225 Query: 379 DGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + E + PT SP G+SL F R+ G S L+S DL E + Sbjct: 226 ETKELEPFITGPGGSVRPTPSPDGKSLAFVRRVRGK--SVLFSADLVSGAERPL 277 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 102/295 (34%), Gaps = 40/295 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + S + + + L + G + LT +PR+SP+ +A+ Sbjct: 43 EGTWMSVDVSPKGDELVFDLLGDLYTLPIAGGEAKALTTG-AAWDMQPRYSPDGASIAFT 101 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + + D P +FR + +P +S + + + S ++ A ++ Sbjct: 102 SDRGGGDNLWIMKRDGSDSRPVTQESFRLLN-SPTWSPDSQYLVARKHFSSRRSLGAGEM 160 Query: 285 YSVDLQSNATERLT---NTLFINISASYSPDSSQI----------VFESDREGKEQLYVM 331 + +LT N ++SPD + VFE +++ Q+YV+ Sbjct: 161 WLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRFLYFSQDTTPGKVFEYNKDPNGQIYVI 220 Query: 332 QSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 Q + K + P SP G +AF + K + ER L + Sbjct: 221 QRLNLETKELEPFITGPGGSVRPTPSPDGKSLAFVRRVRGKSVLFSADLVSGAERPLFDG 280 Query: 390 ------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 A W+P +SL+F + KL ID+ + T I Sbjct: 281 LDRDMQETWAIHGVYPAMAWTPDSKSLVFWAQ------GKLNRIDVASKRVTPIP 329 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 60/328 (18%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + S + + + R G LT P+ + EP FSP+ + Sbjct: 135 TWSPDSQYLVARKHFSSRRSLGAGEMWLYHRAGGEGVQLTERPNDQKDAGEPAFSPDGRF 194 Query: 226 VAYATYD------------DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + ++ + I + ++ I + P S +GK Sbjct: 195 LYFSQDTTPGKVFEYNKDPNGQIYVIQRLNLETKELEPFITGPGGSVR-PTPSPDGKSLA 253 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDR 322 + ++S DL S A L + L ++ +++PDS +VF + Sbjct: 254 FVRRVRGKSVLFSADLVSGAERPLFDGLDRDMQETWAIHGVYPAMAWTPDSKSLVFWAQ- 312 Query: 323 EGKEQLYVMQSNGSDQKRI------SQDKEASYFDP---------------VW---SPQG 358 +L + I ++ A P W SP+G Sbjct: 313 ---GKLNRIDVASKRVTPIPFHVKGTRTLFARVHSPQAQAVVPERFPVKMLRWVQVSPKG 369 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGS 416 D + + + + R L + + P++S G+S++++ D G+ Sbjct: 370 DRVVYQALG----HLYTRELPDGLPRRLTKQTEHFEMHPSFSRDGKSIVYTTWDDDKLGT 425 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 G + + P + +P + Sbjct: 426 VRVVSAGGGEGKVVSAQPGFYLEPAFSP 453 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 43/265 (16%) Query: 218 RFSPNQQKVAYATYDD--------EDILRVYLMDTRIDRAPKRIGNFRSMILAP------ 263 ++P+ + + + + + + R+ + ++ + P Sbjct: 299 AWTPDSKSLVFWAQGKLNRIDVASKRVTPIPFHVKGTRTLFARVHSPQAQAVVPERFPVK 358 Query: 264 --RF---SSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIV 317 R+ S G R + +Y+ +L RLT T + S+S D IV Sbjct: 359 MLRWVQVSPKGDRVVYQA----LGHLYTRELPDGLPRRLTKQTEHFEMHPSFSRDGKSIV 414 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-------- 369 + + + K + S G + ++ + Y +P +SP G I + G Sbjct: 415 YTTWDDDKLGTVRVVSAGGGEGKVVSAQPGFYLEPAFSPDGRSIVYRASGGGYLLPGLYS 474 Query: 370 -KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG--SKLYSIDLNGR 426 + V+ KDG R L +D + P + + F + G+ +L SI L+G Sbjct: 475 RDPGLYVVGKDGGTPRRLSKDG--EQPHFGAGSDRVYFLAVEGGEKEDKRELRSIGLDGT 532 Query: 427 NETLINTPAYAS------DPQWVGF 445 T A S D +WV F Sbjct: 533 APRTHLTSAEVSTYRVSPDERWVAF 557 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 329 YVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + + G + D E ++ SP+GD + F + + G + + L Sbjct: 25 WNVNAPGFPSTEVPLDVTEGTWMSVDVSPKGDELVFDLLGD----LYTLPIAGGEAKALT 80 Query: 388 EDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + P +SP G S+ F+ + G G L+ + +G + + ++ + P W Sbjct: 81 TGAAWDMQPRYSPDGASIAFTSDRGG--GDNLWIMKRDGSDSRPVTQESFRLLNSPTWSP 138 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 68/244 (27%), Gaps = 63/244 (25%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + ++ V+ G + ++ + EP FSP+ + + Y Sbjct: 413 IVYTTWDDDKLGTVRVVSAGGGEGKVVSA-QPGFYLEPAFSPDGRSIVYR---------- 461 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + +L +S + +Y V RL+ Sbjct: 462 --------------ASGGGYLLPGLYSRD-------------PGLYVVGKDGGTPRRLSK 494 Query: 300 TLFINISASYSPDSSQIVFESDREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + S ++ F + G K +L + +G+ + + A S Sbjct: 495 DGE---QPHFGAGSDRVYFLAVEGGEKEDKRELRSIGLDGTAPR--THLTSAEVSTYRVS 549 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT------------WSPSGRS 403 P +AF E F V + ++ + P WS + Sbjct: 550 PDERWVAF----QEVFNAYVAPLSRGGKTVVASKDSKALPVTRVSRDAGNFLHWSGDSKR 605 Query: 404 LIFS 407 L ++ Sbjct: 606 LYWA 609 >gi|134105212|pdb|2OJH|A Chain A, The Structure Of Putative Tolb From Agrobacterium Tumefaciens Length = 297 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 15/203 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ A + + +YL+ + N S +S +GK + Sbjct: 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLXTKNLPSYWHG--WSPDGKSFTYCGIR 149 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D+ DIYS D+ S RLT+ N YSPD I F S R G+ Q++ ++ +GS Sbjct: 150 DQVFDIYSXDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQXQIWRVRVDGSSV 209 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQERLLVE-- 388 +RI+ +F P SP GD + F + + F + + DG L + Sbjct: 210 ERITDSAYGDWF-PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLXDXDGGNVETLFDLF 268 Query: 389 --DSNLQAPTWSPSGRSLIFSRK 409 +P WSP G + R Sbjct: 269 GGQGTXNSPNWSPDGDEFAYVRY 291 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 77/188 (40%), Gaps = 14/188 (7%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K+++ ++ G R +++ + +SP+ + Y D + +Y D Sbjct: 108 GKSAIYLLPSTGGTPR--LXTKNLPSYWHGWSPDGKSFTYCGIRD-QVFDIYSXDIDSGV 164 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 R+ + P +S +G+ + + I+ V + ++ ER+T++ + + Sbjct: 165 ET-RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQXQIWRVRVDGSSVERITDSAYGDWFPH 223 Query: 309 YSPDSSQIVFESD--------REGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQG 358 SP ++VF S R+ ++ + +G + + + + + P WSP G Sbjct: 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLXDXDGGNVETLFDLFGGQGTXNSPNWSPDG 283 Query: 359 DLIAFTKF 366 D A+ ++ Sbjct: 284 DEFAYVRY 291 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 15/197 (7%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFI-- 303 R + + + AP +S +GK L+ + +Y + L + + E++ Sbjct: 31 TRKXRVVWQTPELFEAPNWSPDGKYLLL----NSEGLLYRLSLAGDPSPEKVDTGFATIC 86 Query: 304 NISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N SPD + SD+ GK +Y++ S G + +++ + + WSP G Sbjct: 87 NNDHGISPDGALYA-ISDKVEFGKSAIYLLPSTGGTPRLXTKNLPSYWHG--WSPDGKSF 143 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + F I D E L P +SP GR + F+ + G +++ Sbjct: 144 TYCGIRDQVFDIYSXDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ--XQIWR 201 Query: 421 IDLNGRNETLINTPAYA 437 + ++G + I AY Sbjct: 202 VRVDGSSVERITDSAYG 218 Score = 40.0 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL----CVMDRDGANIRYLTP--SR 210 I+D Y +++FVS L + D DG N+ L Sbjct: 211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLXDXDGGNVETLFDLFGG 270 Query: 211 DQILFEPRFSPNQQKVAYATY 231 P +SP+ + AY Y Sbjct: 271 QGTXNSPNWSPDGDEFAYVRY 291 >gi|149186900|ref|ZP_01865209.1| hypothetical protein ED21_22118 [Erythrobacter sp. SD-21] gi|148829409|gb|EDL47851.1| hypothetical protein ED21_22118 [Erythrobacter sp. SD-21] Length = 1112 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 29/212 (13%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + S +G+ S+ D IY++ + R+ L I +SPD Sbjct: 89 IDTDEGTWMDVAVSPDGRTLAFSMLGD----IYTMPVSGGTPTRIAEGLAWEIQPRFSPD 144 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFS 367 S+I F SDR G + +++M ++GS++++++ + P WSP G I T+ S Sbjct: 145 GSRIAFISDRGGGDNIWLMNTDGSNKQQVTMEDFRLLNQPSWSPDGRYIVAKKHFTTQRS 204 Query: 368 GEKFAIGVMKKDGSQERLLVEDSN------LQAPTWSPSGRSLIFSRK------------ 409 I + G LV+ ++ L P ++P G ++ ++R Sbjct: 205 AGTGEIWLYHVSGGGGVQLVKRASEAVQKELGEPIYAPDGNAIYYTRNITPGATFEYAQD 264 Query: 410 -KDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G + Y ID G T + A P Sbjct: 265 STQGIFNIERYDID-TGEVTTAVGGYGGAVRP 295 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 35/258 (13%) Query: 200 GANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 GA +R + D+ + SP+ + +A++ D +Y M P RI + Sbjct: 81 GATMREVAIDTDEGTWMDVAVSPDGRTLAFSMLGD-----IYTMPV-SGGTPTRIAEGLA 134 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 + PRFS +G R + +I+ ++ + +++T + +N S+SPD I Sbjct: 135 WEIQPRFSPDGSRIAFISDRGGGDNIWLMNTDGSNKQQVTMEDFRLLN-QPSWSPDGRYI 193 Query: 317 V----FESDRE-GKEQLYVMQSNGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 V F + R G ++++ +G KR S+ + +P+++P G+ I +T+ Sbjct: 194 VAKKHFTTQRSAGTGEIWLYHVSGGGGVQLVKRASEAVQKELGEPIYAPDGNAIYYTRNI 253 Query: 367 ------------SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD 413 + F I D + V P SP GRS+ F R+ Sbjct: 254 TPGATFEYAQDSTQGIFNIERYDIDTGEVTTAVGGYGGAVRPVPSPDGRSIAFVRRDKDQ 313 Query: 414 TGSKLYSIDLNGRNETLI 431 S+L+ DL+ E +I Sbjct: 314 --SQLWVKDLSTGEERMI 329 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 117/357 (32%), Gaps = 79/357 (22%) Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 +IA ++ +I + + SRI F+S+ + +M+ DG+N + +T + Sbjct: 128 RIAEGLAWEIQPRFSPDG----SRIAFISDRGGGDN----IWLMNTDGSNKQQVTMEDFR 179 Query: 213 ILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI----LAPR 264 +L +P +SP+ + + + T ++L + + + P Sbjct: 180 LLNQPSWSPDGRYIVAKKHFTTQRSAGTGEIWLYHVSGGGGVQLVKRASEAVQKELGEPI 239 Query: 265 FSSNGKRALISV-------------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 ++ +G + +I D+ + + SP Sbjct: 240 YAPDGNAIYYTRNITPGATFEYAQDSTQGIFNIERYDIDTGEVTTAVGGYGGAVRPVPSP 299 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRI----------SQDKEASYFDPVWSPQGDLI 361 D I F + + QL+V + +++ I + Y W P G + Sbjct: 300 DGRSIAFVRRDKDQSQLWVKDLSTGEERMIYGALDLDLQETWAVYGVYPMMDWMPDGKSM 359 Query: 362 AFTKFSGEKFAIGVMKKDGSQER-------------------LLVEDSNLQAPTW---SP 399 ++G K GS + + + P + SP Sbjct: 360 VV--WAGGKLNRVAADGSGSDVIPFRISDTRMVAEAPHPVIDVAPDSFTAKIPRFASVSP 417 Query: 400 SGRSLIFSRKKDGDTGSKLYS--IDLNGRNETLINT--------PAYASDPQWVGFM 446 GR+++F ++ KLY + + LI+ PA++ D + F+ Sbjct: 418 DGRTVVF------ESLGKLYVKPVGSDAAPRRLISGSDDSLELWPAWSRDGDRIAFV 468 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 118/348 (33%), Gaps = 57/348 (16%) Query: 102 DWNSLGAQVLVTG-----RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAH 156 DW G ++V RV +G + FR+ D + + + H Sbjct: 351 DWMPDGKSMVVWAGGKLNRVAADGSGSDVIPFRISDT---RMVA------------EAPH 395 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 + D S T + F S V + K + + D A R ++ S D + Sbjct: 396 PVIDVAPDSFTAKIPRFASVSPDGRTVVFESLGKLYVKPVGSDAAPRRLISGSDDSLELW 455 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +S + ++A+ + D + R+ +D R R + I + P+FS +G + Sbjct: 456 PAWSRDGDRIAFVRWTDAGLGRIVTVDAR-GRNERVITRQQGHYAVPQFSPDGDTIVFEK 514 Query: 277 QKDE---------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 + +YSV + + D +I + EG Q Sbjct: 515 RGGGFLTSPTYSENEGVYSVSASGGTPRLVARETST---PQFGADEDRIFMLARAEGNLQ 571 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 L +G ++ +Q A+ F SP+GD +AF + + + M + + V Sbjct: 572 LISADLDGEARRVHAQGDLANDF--RVSPRGDYVAFRQ----NYEVFAMPLLPGGQTVTV 625 Query: 388 EDSNLQAPT------------WSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + P W+ +G +L +S G LY Sbjct: 626 GEKASSLPVTKVSKGGADYIGWADNGSTLHWS------MGPVLYRAST 667 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 48/328 (14%), Positives = 99/328 (30%), Gaps = 58/328 (17%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE----PRFSPNQ 223 D + + + + G L + + + P ++P+ Sbjct: 185 SWSPDGRYIVAKKHFTTQRSAGTGEIWLYHVSGGGGVQLVKRASEAVQKELGEPIYAPDG 244 Query: 224 QKVAYATY------------DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + Y + I + D +G + + P S +G+ Sbjct: 245 NAIYYTRNITPGATFEYAQDSTQGIFNIERYDIDTGEVTTAVGGYGGAVR-PVPSPDGRS 303 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + ++ DL + + L +++ +++ + + +GK + Sbjct: 304 IAFVRRDKDQSQLWVKDLSTGEERMIYGALDLDLQETWAVYGVYPMMDWMPDGKSMVVW- 362 Query: 332 QSNGSDQKRISQDKEASYFDP--------------------------------VWSPQGD 359 G R++ D S P SP G Sbjct: 363 --AGGKLNRVAADGSGSDVIPFRISDTRMVAEAPHPVIDVAPDSFTAKIPRFASVSPDGR 420 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 + F K + + D + RL+ +DS P WS G + F R D G + Sbjct: 421 TVVFESL--GKLYVKPVGSDAAPRRLISGSDDSLELWPAWSRDGDRIAFVRWTDAGLG-R 477 Query: 418 LYSIDLNGRNETLIN-TPAYASDPQWVG 444 + ++D GRNE +I + + PQ+ Sbjct: 478 IVTVDARGRNERVITRQQGHYAVPQFSP 505 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 102/289 (35%), Gaps = 53/289 (18%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR----------FSPNQQKVAYATYDD 233 V ++ L V D R + + D L E + P+ + + + Sbjct: 307 VRRDKDQSQLWVKDLSTGEERMIYGALDLDLQETWAVYGVYPMMDWMPDGKSM--VVWAG 364 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAP-------------------RFSSNGKRALI 274 + RV + D P RI + R + AP S +G+ + Sbjct: 365 GKLNRVAADGSGSDVIPFRISDTRMVAEAPHPVIDVAPDSFTAKIPRFASVSPDGRTVVF 424 Query: 275 SVQKDEAMDIYSVDLQS-NATERLTNTLFINIS--ASYSPDSSQIVFESDRE-GKEQLYV 330 +Y + S A RL + ++ ++S D +I F + G ++ Sbjct: 425 ES----LGKLYVKPVGSDAAPRRLISGSDDSLELWPAWSRDGDRIAFVRWTDAGLGRIVT 480 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------KFAIGVMKKDGS 381 + + G +++ I++ ++ Y P +SP GD I F K G + + G Sbjct: 481 VDARGRNERVITR-QQGHYAVPQFSPDGDTIVFEKRGGGFLTSPTYSENEGVYSVSASGG 539 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 RL+ +++ P + + + +G +L S DL+G + Sbjct: 540 TPRLVARETST--PQFGADEDRIFMLARAEG--NLQLISADLDGEARRV 584 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 330 VMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + G+ + ++ D E ++ D SP G +AF+ I M G + E Sbjct: 76 ITAPRGATMREVAIDTDEGTWMDVAVSPDGRTLAFSMLGD----IYTMPVSGGTPTRIAE 131 Query: 389 DSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + P +SP G + F + G G ++ ++ +G N+ + + + P W Sbjct: 132 GLAWEIQPRFSPDGSRIAFISDRGG--GDNIWLMNTDGSNKQQVTMEDFRLLNQPSWSP 188 >gi|309792445|ref|ZP_07686910.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] gi|308225517|gb|EFO79280.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] Length = 627 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 108/323 (33%), Gaps = 45/323 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y + + + V S + + + + G R ++ + F R S + Sbjct: 305 YPHLGMPWAAPDPSLPLVYASNIDTGSHWEVYMSNNAGGGTRMTRNPQETVAFSWRHSWD 364 Query: 223 QQKVA-----------YATYDDEDILRVYLMDTRIDRAPKRIGNFRS------------- 258 + + + D+ +Y D + +R+ Sbjct: 365 PAMLTLLVDSRRTNAQFRQIYEYDVNAIYSGDFSANAFVRRLTYTDGTQPPPNAPYPGYL 424 Query: 259 -----MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +S +G + + + +++ + +N+ +LT IN S ++SP+ Sbjct: 425 PNNTANNYNASYSPDGTKIVFVTDRWGGQELFIMTPTANSPTQLTGQGCINESPTWSPNG 484 Query: 314 SQIVFESDREGKEQLYV----MQSNGS-------DQKRISQDKEASYFDPVWSPQGDLIA 362 + + S+ +G +Y G+ + P SP G +A Sbjct: 485 RHLYWTSNCDGDFDIYRGEIAYNYEGTWSVDARLVNVVNLTNNNVDDRFPRVSPDGKTVA 544 Query: 363 FTKFSGEKFAIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 F + I M RL ++ +PTWS G L F+ +DGD ++Y+ Sbjct: 545 FGSNRDGNWEIYTMSSASGDTLRRLTSNNATDDSPTWSADGSKLAFASDRDGDF--EIYT 602 Query: 421 IDLNGRNETLINTP-AYASDPQW 442 + L+G N T I A P W Sbjct: 603 MTLDGNNTTQITNNSAQDRWPLW 625 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 15/205 (7%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 P+ + +SP+ K+ + T + + T +P ++ + +P +S Sbjct: 424 LPNNTANNYNASYSPDGTKIVFVTDRWGG--QELFIMTPTANSPTQLTGQGCINESPTWS 481 Query: 267 SNGKRALISVQKDEAMDIY------------SVDLQSNATERLTNTLFINISASYSPDSS 314 NG+ + D DIY SVD + LTN + SPD Sbjct: 482 PNGRHLYWTSNCDGDFDIYRGEIAYNYEGTWSVDARLVNVVNLTNNNVDDRFPRVSPDGK 541 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + F S+R+G ++Y M S D R A+ P WS G +AF F I Sbjct: 542 TVAFGSNRDGNWEIYTMSSASGDTLRRLTSNNATDDSPTWSADGSKLAFASDRDGDFEIY 601 Query: 375 VMKKDGSQERLLVEDS-NLQAPTWS 398 M DG+ + +S + P W+ Sbjct: 602 TMTLDGNNTTQITNNSAQDRWPLWA 626 >gi|307102700|gb|EFN50969.1| hypothetical protein CHLNCDRAFT_141607 [Chlorella variabilis] Length = 357 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 115/316 (36%), Gaps = 55/316 (17%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + E N RI FV +G +L M DG+++R LTPS + P +SP+ Sbjct: 23 HVHPEATAKNGRIAFV---RATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGD 79 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALIS-VQKDEAM 282 +VAY + + + +++ + + + P FS +G+ + + D + Sbjct: 80 RVAY-SGRHDGVWKIWEVQADGTGLRRLTDGPPGAAIMVPAFSPDGRFIVFEGTEADGST 138 Query: 283 DIYSVD-LQSNATERLT---NTLFI-NISASYSPDSSQIVFESDRE---GKEQLYVMQ-- 332 ++ D RLT + I ++ A SPD + F SDR G+ +++M+ Sbjct: 139 TVWRADAADGGNATRLTPADQSPSITDMGAKPSPDGQLLAFASDRGNAPGQYDVWLMEGW 198 Query: 333 ---SNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK--------- 378 +G + R++ + W+P + G I V Sbjct: 199 QQAPDGPGVRLHRLTAGAN-NTLSRSWAPDSRRLVLNSMRGGVGRICVADVPAAEAALDA 257 Query: 379 -----DGSQERLLVEDS-----------------NLQAPTWSPSGRSLIFSRKKDGDTGS 416 D ++ L + P WSP G + FS + G Sbjct: 258 LAAPIDAARLLCLTNTTSTPNGPWSPGGMFPTVDGDATPAWSPDGSRIAFSSNRAGSF-- 315 Query: 417 KLYSIDLNGRNETLIN 432 +++S+ +G + + Sbjct: 316 EIFSMAADGSDVRRLT 331 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 18/219 (8%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 I P + ++A+ ++ M + + M + P +S +G R Sbjct: 21 NIHVHPEATAKNGRIAFVRATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGDR 80 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTL--FINISASYSPDSSQIVFE-SDREGKEQL 328 S + D I+ V RLT+ + ++SPD IVFE ++ +G + Sbjct: 81 VAYSGRHDGVWKIWEVQADGTGLRRLTDGPPGAAIMVPAFSPDGRFIVFEGTEADGSTTV 140 Query: 329 YVMQ-SNGSDQKRISQDKEA---SYFDPVWSPQGDLIAFTKFSG---EKFAIGVMK---- 377 + ++G + R++ ++ + SP G L+AF G ++ + +M+ Sbjct: 141 WRADAADGGNATRLTPADQSPSITDMGAKPSPDGQLLAFASDRGNAPGQYDVWLMEGWQQ 200 Query: 378 -KDGSQERL--LVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 DG RL L +N + +W+P R L+ + + G Sbjct: 201 APDGPGVRLHRLTAGANNTLSRSWAPDSRRLVLNSMRGG 239 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 93/290 (32%), Gaps = 51/290 (17%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + R++ + D GD R+ + + + DG +R LT Sbjct: 56 SDMRQLTPSSGDMEVHPSWSPSGD---RVAY----SGRHDGVWKIWEVQADGTGLRRLTD 108 Query: 209 SRDQI-LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM----ILAP 263 + P FSP+ + + + + + V+ D R+ + Sbjct: 109 GPPGAAIMVPAFSPDGRFIVFEGTEADGSTTVWRADAADGGNATRLTPADQSPSITDMGA 168 Query: 264 RFSSNGKRALISVQKD---EAMDIYSV-------DLQSNATERLTNTLFINISASYSPDS 313 + S +G+ + + D++ + D RLT +S S++PDS Sbjct: 169 KPSPDGQLLAFASDRGNAPGQYDVWLMEGWQQAPDGPGVRLHRLTAGANNTLSRSWAPDS 228 Query: 314 SQIVFESDREGKEQLYVMQSNGS-----------DQKRI--------SQDKEAS------ 348 ++V S R G ++ V + D R+ + + S Sbjct: 229 RRLVLNSMRGGVGRICVADVPAAEAALDALAAPIDAARLLCLTNTTSTPNGPWSPGGMFP 288 Query: 349 ----YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 P WSP G IAF+ F I M DGS R L A Sbjct: 289 TVDGDATPAWSPDGSRIAFSSNRAGSFEIFSMAADGSDVRRLTFTPREDA 338 Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Query: 303 INISASYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I++ + + +I F G+ L+ M +GSD ++++ P WSP GD + Sbjct: 22 IHVHPEATAKNGRIAFVRATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGDRV 81 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 A++ + I ++ DG+ R L + + + P +SP GR ++F + D + + Sbjct: 82 AYSGRHDGVWKIWEVQADGTGLRRLTDGPPGAAIMVPAFSPDGRFIVF-EGTEADGSTTV 140 Query: 419 YSID-LNGRNETLINTPAYAS 438 + D +G N T + TPA S Sbjct: 141 WRADAADGGNATRL-TPADQS 160 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%) Query: 349 YFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLI 405 + P + + IAF + +G + A+ M DGS R L S P+WSPSG + Sbjct: 23 HVHPEATAKNGRIAFVRATGGRDPALWTMLPDGSDMRQLTPSSGDMEVHPSWSPSGDRVA 82 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINT---------PAYASDPQWVGF 445 +S + DG K++ + +G + PA++ D +++ F Sbjct: 83 YSGRHDG--VWKIWEVQADGTGLRRLTDGPPGAAIMVPAFSPDGRFIVF 129 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 36/169 (21%) Query: 174 NSRILFVSESVVSGIIKNSLCVMD-----RDGANIR-YLTPSRDQILFEPRFSPNQQKVA 227 + ++L + + + + +M+ DG +R + + ++P+ +++ Sbjct: 173 DGQLLAFASDRGNAPGQYDVWLMEGWQQAPDGPGVRLHRLTAGANNTLSRSWAPDSRRLV 232 Query: 228 YATYDDEDILRVYLMD-----------------------TRIDRAPKRIGNFRSM----- 259 + + R+ + D T P + M Sbjct: 233 LNSMR-GGVGRICVADVPAAEAALDALAAPIDAARLLCLTNTTSTPNGPWSPGGMFPTVD 291 Query: 260 -ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 P +S +G R S + + +I+S+ + RLT T + +A Sbjct: 292 GDATPAWSPDGSRIAFSSNRAGSFEIFSMAADGSDVRRLTFTPREDAAA 340 >gi|116626707|ref|YP_828863.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229869|gb|ABJ88578.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 955 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 24/211 (11%) Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTL 301 R ++ + + FS +GK+ S ++ +IY+ + + ++T Sbjct: 404 GVRGGLEAVQVTTVPGLAIGASFSPDGKQIAFSSNRNGWFEIYTKPSEGPGSDHQVTTDG 463 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + ++SPD I + S K L+++ S G RIS+ A P WSP G + Sbjct: 464 NQAVEPAWSPDGKWIAYHSVA--KHGLWMVPSGGGTPHRISEFGSA----PAWSPDGRTL 517 Query: 362 AFTKFS-----------GEKFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSGRSLIF 406 AF + + I ++ DG+ + L + P+WSP G+ LIF Sbjct: 518 AFRSYETSSLALSDWPGDGESTIWIVAADGTNLQQLTQPRNPPGQHADPSWSPDGKRLIF 577 Query: 407 SRKKDGDTGSK--LYSIDLNGRNETLINTPA 435 + G + L+++D+ + + Sbjct: 578 ASLNIVTMGFRGALFTVDVKSGDVKPVPAGG 608 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 115/319 (36%), Gaps = 53/319 (16%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + ++ + DGAN L ++ + S + + +A+ Sbjct: 620 DGKGVYFAGRPNIAGFNGVYYSAFSDGANPVELYRTKQAVPARISLSRDGKSLAFTRMV- 678 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSN 292 + +++L DT + + P FS +G R VQ D+A ++ ++ + Sbjct: 679 -NASQIWLTDTSGKESKALYEDLVVRARIPNFSPDGSRLNYQVQSDDATLGVWLMNADGS 737 Query: 293 ATERLTNTLFINISASYS-----------------------PDSSQIV------------ 317 R+ L AS++ D S+ V Sbjct: 738 NPTRVAPDLGNTNGASWASNGNALVCSFFGSGKLRFIWISLADGSRRVMEEQTRDMLRSH 797 Query: 318 -------FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 F D ++ G ++++ ++ ++F P S G+ IA+ G++ Sbjct: 798 LTPDEKEFVYDFGSPRNIWKRPVAGGPARQLTFGRQRNWF-PELSWDGNWIAYQVTEGDE 856 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSID-LNGRNE 428 I V+ ++G Q+RLL + +++ R + ++ ++G LY ID + G ++ Sbjct: 857 TQIAVIDRNGGQQRLLTSGPGKRFAHSFASDNRRIAYAGFENGAW--NLYWIDRITGEHK 914 Query: 429 TLIN---TPAYASDPQWVG 444 + + ++ P W Sbjct: 915 QVTHFTAFGSFVRSPAWRP 933 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 95/231 (41%), Gaps = 28/231 (12%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SV 276 FSP+ +++A+++ + +Y + + ++ + + P +S +GK SV Sbjct: 425 SFSPDGKQIAFSSNRNG-WFEIYTKPSEGPGSDHQVTTDGNQAVEPAWSPDGKWIAYHSV 483 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-----------EGK 325 K ++ V R++ + ++SPD + F S +G+ Sbjct: 484 AKHG---LWMVPSGGGTPHRISEFGS---APAWSPDGRTLAFRSYETSSLALSDWPGDGE 537 Query: 326 EQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKKD 379 ++++ ++G++ ++++Q + + DP WSP G + F + G + A+ + Sbjct: 538 STIWIVAADGTNLQQLTQPRNPPGQHADPSWSPDGKRLIFASLNIVTMGFRGALFTVDVK 597 Query: 380 GSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKD-GDTGSKLYSIDLNGRN 427 + + A P ++ G+ + F+ + + YS +G N Sbjct: 598 SGDVKPVPAGGIWGAANPVFALDGKGVYFAGRPNIAGFNGVYYSAFSDGAN 648 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%) Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASY 349 ++T + I AS+SPD QI F S+R G ++Y S G +++ D + Sbjct: 408 GLEAVQVTTVPGLAIGASFSPDGKQIAFSSNRNGWFEIYTKPSEGPGSDHQVTTDGNQAV 467 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +P WSP G IA+ + K + ++ G + E + AP WSP GR+L F Sbjct: 468 -EPAWSPDGKWIAYHSVA--KHGLWMVPSGGGTPHRISEFGS--APAWSPDGRTLAFRSY 522 Query: 410 K---------DGDTGSKLYSIDLNGRNETLINT----PAYASDPQWVG 444 + GD S ++ + +G N + P +DP W Sbjct: 523 ETSSLALSDWPGDGESTIWIVAADGTNLQQLTQPRNPPGQHADPSWSP 570 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 95/278 (34%), Gaps = 35/278 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + +G + + EP +SP+ + +AY + + V P Sbjct: 444 EIYTKPSEGPGSDHQVTTDGNQAVEPAWSPDGKWIAYHSVAKHGLWMV----PSGGGTPH 499 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERLT-- 298 RI F S AP +S +G+ D I+ V ++LT Sbjct: 500 RISEFGS---APAWSPDGRTLAFRSYETSSLALSDWPGDGESTIWIVAADGTNLQQLTQP 556 Query: 299 -NTLFINISASYSPDSSQIVFES----DREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 N + S+SPD +++F S + L+ + D K + +PV Sbjct: 557 RNPPGQHADPSWSPDGKRLIFASLNIVTMGFRGALFTVDVKSGDVKPVPAGGIWGAANPV 616 Query: 354 WSPQGDLIAFTKF---SGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSR 408 ++ G + F +G DG+ L + + + S G+SL F+R Sbjct: 617 FALDGKGVYFAGRPNIAGFNGVYYSAFSDGANPVELYRTKQAVPARISLSRDGKSLAFTR 676 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTP--AYASDPQWVG 444 + S+++ D +G+ + A P + Sbjct: 677 MVN---ASQIWLTDTSGKESKALYEDLVVRARIPNFSP 711 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 101/269 (37%), Gaps = 36/269 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY------------DDEDIL 237 K+ L ++ G ++ P +SP+ + +A+ +Y D E + Sbjct: 485 KHGLWMVPSGGGTPHRISEFGS----APAWSPDGRTLAFRSYETSSLALSDWPGDGESTI 540 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV----QKDEAMDIYSVDLQSNA 293 + D + + N P +S +GKR + + +++VD++S Sbjct: 541 WIVAADGTNLQQLTQPRNPPGQHADPSWSPDGKRLIFASLNIVTMGFRGALFTVDVKSGD 600 Query: 294 TERLTNTLFIN-ISASYSPDSSQIVFESDREGKEQL-------YVMQSNGSDQKRISQDK 345 + + + ++ D + F G+ + Y S+G++ + + K Sbjct: 601 VKPVPAGGIWGAANPVFALDGKGVYFA----GRPNIAGFNGVYYSAFSDGANPVELYRTK 656 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRS 403 +A S G +AFT+ I + G + + L ED + P +SP G Sbjct: 657 QAVPARISLSRDGKSLAFTRMVNAS-QIWLTDTSGKESKALYEDLVVRARIPNFSPDGSR 715 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 L + + D D ++ ++ +G N T + Sbjct: 716 LNYQVQSD-DATLGVWLMNADGSNPTRVA 743 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 100/260 (38%), Gaps = 13/260 (5%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI--LFEPRFSPNQQKVAYATYD---DE 234 ++ S G ++++ ++ DG N++ LT R+ +P +SP+ +++ +A+ + Sbjct: 527 LALSDWPGDGESTIWIVAADGTNLQQLTQPRNPPGQHADPSWSPDGKRLIFASLNIVTMG 586 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD---EAMDIYSVDLQS 291 ++ +D + P F+ +GK + + + YS Sbjct: 587 FRGALFTVDVKSGDVKPVPAGGIWGAANPVFALDGKGVYFAGRPNIAGFNGVYYSAFSDG 646 Query: 292 NATERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 L T + S S D + F Q+++ ++G + K + +D Sbjct: 647 ANPVELYRTKQAVPARISLSRDGKSLAFTRMVN-ASQIWLTDTSGKESKALYEDLVVRAR 705 Query: 351 DPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSR 408 P +SP G + + + + +M DGS R+ + N +W+ +G +L+ S Sbjct: 706 IPNFSPDGSRLNYQVQSDDATLGVWLMNADGSNPTRVAPDLGNTNGASWASNGNALVCSF 765 Query: 409 KKDGDTGSKLYSIDLNGRNE 428 G ++ +G Sbjct: 766 FGSGKLRF-IWISLADGSRR 784 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 93/262 (35%), Gaps = 17/262 (6%) Query: 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 +L ++V R+ D R+ ++ V+ +G ++ S ++ D+ Sbjct: 694 KALYEDLVVRARIPNFSPDGSRLNYQ---VQSDDATLGVWLMNADGSNPT---RVAPDL- 746 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 T ++ V SG ++ + + DG+ +RD + P++ Sbjct: 747 -GNTNGASWASNGNALVCSFFGSGKLRF-IWISLADGSRRVMEEQTRDMLRSHLT--PDE 802 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++ Y +I + + +++ R P S +G V + + Sbjct: 803 KEFVYDFGSPRNIWKRPV----AGGPARQLTFGRQRNWFPELSWDGNWIAYQVTEGDETQ 858 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 I +D LT+ + S++ D+ +I + G LY + + K+++ Sbjct: 859 IAVIDRNGGQQRLLTSGPGKRFAHSFASDNRRIAYAGFENGAWNLYWIDRITGEHKQVTH 918 Query: 344 DK--EASYFDPVWSPQGDLIAF 363 + P W P + IA+ Sbjct: 919 FTAFGSFVRSPAWRPGTEQIAY 940 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG--RNETLINT------P 434 ++ ++SP G+ + FS ++G ++Y+ G + + P Sbjct: 412 VQVTTVPGLAIGASFSPDGKQIAFSSNRNG--WFEIYTKPSEGPGSDHQVTTDGNQAVEP 469 Query: 435 AYASDPQWVGF 445 A++ D +W+ + Sbjct: 470 AWSPDGKWIAY 480 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD- 243 V+ + + V+DR+G + L S F F+ + +++AYA +++ +Y +D Sbjct: 851 VTEGDETQIAVIDRNGG-QQRLLTSGPGKRFAHSFASDNRRIAYAGFENG-AWNLYWIDR 908 Query: 244 -TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 T + F S + +P + ++ Sbjct: 909 ITGEHKQVTHFTAFGSFVRSPAWRPGTEQIAYEYS 943 >gi|226226607|ref|YP_002760713.1| hypothetical protein GAU_1201 [Gemmatimonas aurantiaca T-27] gi|226089798|dbj|BAH38243.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 997 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 26/245 (10%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATY----DDEDILRVYLMDTRIDRAPKRI------ 253 + T S + P S + + + Y Y E +YL + + R+ Sbjct: 310 QKRTGSIANMFVAPALSNDGKFITYIGYGSLLRGEVFPEMYLANAETGKRITRLVKTTTN 369 Query: 254 ---GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISASY 309 R + P FS +GK+ + Q+ +Y +D++S +R+ L +S S+ Sbjct: 370 PDFEQLRFIYSQPSFSLDGKQLAFTGQRGGRDVLYIMDVKSRNIVKRIDLELDQVLSPSF 429 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG- 368 SPD ++VF R G LYV+ + ++ +D+ P WSP G IAF G Sbjct: 430 SPDGRKVVFSGMRHGSSDLYVVSLDAPGYTQLMKDQYGDLM-PQWSPDGKTIAFISDRGP 488 Query: 369 ---------EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + Q +L + P W+P G+SL + + G L Sbjct: 489 DTDLDILKIGAWKVVTFDLETQQMTILPGQGGRAINPQWAPDGKSLAYVTDRTGIANIFL 548 Query: 419 YSIDL 423 Y D Sbjct: 549 YDFDA 553 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 98/263 (37%), Gaps = 15/263 (5%) Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 + ++ +K S A+ +A +S+D G +F + + + Sbjct: 304 AEPLLSQKRTGSIANM-FVAPALSNDGKFITYIGYGSLLRGEVFPEMYLANAETGKRITR 362 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + + N + I +P FS + +++A+ + +Y+MD + KRI Sbjct: 363 LVKTTTNPDFEQLR--FIYSQPSFSLDGKQLAFTGQRGGRDV-LYIMDVKSRNIVKRIDL 419 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 +L+P FS +G++ + S + + D+Y V L + +L + ++ +SPD Sbjct: 420 ELDQVLSPSFSPDGRKVVFSGMRHGSSDLYVVSLDAPGYTQLMKDQYGDLMPQWSPDGKT 479 Query: 316 IVFESDRE----------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 I F SDR G ++ I + +P W+P G +A+ Sbjct: 480 IAFISDRGPDTDLDILKIGAWKVVTFDLETQQMT-ILPGQGGRAINPQWAPDGKSLAYVT 538 Query: 366 FSGEKFAIGVMKKDGSQERLLVE 388 I + D + L Sbjct: 539 DRTGIANIFLYDFDAKEHYQLTN 561 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 27/220 (12%) Query: 251 KRIGNFRSMILAPRFSSNGKRALIS-----VQKDEAMDIYSVDLQSNA-TERL---TNTL 301 KR G+ +M +AP S++GK ++ + ++Y + ++ RL T Sbjct: 311 KRTGSIANMFVAPALSNDGKFITYIGYGSLLRGEVFPEMYLANAETGKRITRLVKTTTNP 370 Query: 302 ------FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVW 354 FI S+S D Q+ F R G++ LY+M + KRI + + P + Sbjct: 371 DFEQLRFIYSQPSFSLDGKQLAFTGQRGGRDVLYIMDVKSRNIVKRIDLELDQ-VLSPSF 429 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD 413 SP G + F+ + V+ D L++D P WSP G+++ F + D Sbjct: 430 SPDGRKVVFSGMRHGSSDLYVVSLDAPGYTQLMKDQYGDLMPQWSPDGKTIAFISDRGPD 489 Query: 414 TGSKL--------YSIDLNGRNETLINT-PAYASDPQWVG 444 T + + DL + T++ A +PQW Sbjct: 490 TDLDILKIGAWKVVTFDLETQQMTILPGQGGRAINPQWAP 529 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 77/205 (37%), Gaps = 18/205 (8%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 ++ L +MD NI + P FSP+ +KV ++ +Y++ Sbjct: 399 GRDVLYIMDVKSRNIVKRIDLELDQVLSPSFSPDGRKVVFSGMRHGSS-DLYVVSLDAPG 457 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKD----------EAMDIYSVDLQSNATERLT 298 + + + L P++S +GK + A + + DL++ L Sbjct: 458 YTQLMKDQYG-DLMPQWSPDGKTIAFISDRGPDTDLDILKIGAWKVVTFDLETQQMTILP 516 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF------DP 352 I+ ++PD + + +DR G +++ + + +++ A Sbjct: 517 GQGGRAINPQWAPDGKSLAYVTDRTGIANIFLYDFDAKEHYQLTNVAGAVTAVAEQSPAI 576 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMK 377 W+ + D++AF + AI +K Sbjct: 577 SWAREADIMAFVYYEKTDHAIWKIK 601 >gi|86739661|ref|YP_480061.1| serine/threonine protein kinase [Frankia sp. CcI3] gi|86566523|gb|ABD10332.1| serine/threonine protein kinase [Frankia sp. CcI3] Length = 734 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 105/261 (40%), Gaps = 23/261 (8%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 AN + + DQ + P S +++ + Y + L+ D + + + Sbjct: 475 ANDKPIVTGPDQEML-PAISSDRKTIVYFKKGSPNTLQAIAAD-GSGKPVQLFTLGPAAK 532 Query: 261 LA------PRFSSNGKRALISVQKDE----AMDIYSVDLQSNATERLTNTLFINISASYS 310 L P S +G +I D+ +Y V L ++ RL N ++S Sbjct: 533 LTIADDARPSLSPDGGFLVIRSTTDQTGTLNPGLYVVKLDGSSVRRL-NAKPQATDPAWS 591 Query: 311 PDSSQIVFESDREGKEQLYVM---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 PD +I + S+ G + +++ + I+QD+ DPVWSP IAFT+ Sbjct: 592 PDGERIAYWSNSTGGNRGFIVVIPTQPDAQPTPITQDQGNGDSDPVWSPDSRKIAFTRAK 651 Query: 368 GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD--GDTGSKLYSI--- 421 I M DG+ R L + Q P ++P GR + FS +++ +LY + Sbjct: 652 NGDLEIFEMNSDGTDARQLTRVRGDDQDPAYAPDGR-IAFSGQRNPTNPDDRQLYVLNPD 710 Query: 422 DLNGRNETLINTPAYASDPQW 442 DLN + L T + +W Sbjct: 711 DLNDGDRKLTTTGGFNGHARW 731 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 16/202 (7%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 TI+DD S++ + G ++ S + +G + L V+ DG+++R L + + Sbjct: 534 TIADDARPSLSPDGGF----LVIRSTTDQTGTLNPGLYVVKLDGSSVRRL--NAKPQATD 587 Query: 217 PRFSPNQQKVAYATYDDEDIL-RVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALI 274 P +SP+ +++AY + + ++ T+ D P I + P +S + ++ Sbjct: 588 PAWSPDGERIAYWSNSTGGNRGFIVVIPTQPDAQPTPITQDQGNGDSDPVWSPDSRKIAF 647 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE----QLYV 330 + K+ ++I+ ++ +LT + +Y+PD +I F R QLYV Sbjct: 648 TRAKNGDLEIFEMNSDGTDARQLTRVRGDDQDPAYAPDG-RIAFSGQRNPTNPDDRQLYV 706 Query: 331 MQSN---GSDQKRISQDKEASY 349 + + D+K + + Sbjct: 707 LNPDDLNDGDRKLTTTGGFNGH 728 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 314 SQIVFESDREGKEQLYVMQSNGSDQ----KRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +V+ S+R G L+ Q + K I + + S + ++ F K S Sbjct: 449 DTLVYASNRNGNYDLFTGQVTDNGPLANDKPIVTGPDQEMLPAISSDRKTIVYFKKGSPN 508 Query: 370 KFAIGVMKKDGSQERLLVED-------SNLQAPTWSPSGRSLIF--SRKKDGDTGSKLYS 420 G +L ++ P+ SP G L+ + + G LY Sbjct: 509 TLQAIAADGSGKPVQLFTLGPAAKLTIADDARPSLSPDGGFLVIRSTTDQTGTLNPGLYV 568 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 + L+G + +N A+DP W Sbjct: 569 VKLDGSSVRRLNAKPQATDPAWSP 592 >gi|163751698|ref|ZP_02158917.1| hypothetical amidohydrolase [Shewanella benthica KT99] gi|161328437|gb|EDP99593.1| hypothetical amidohydrolase [Shewanella benthica KT99] Length = 1058 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S NGK + D DIY + +Q + L + + +YSP Sbjct: 27 KIDVSEGTWMNISVSPNGKTIVF----DMLGDIYQIPMQGGEAKVLAKGIAWQMQPTYSP 82 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KF 366 D I F SD G + +++M ++GS+ + ++ + P WSP + +T Sbjct: 83 DGKYIAFTSDENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHYTGSR 142 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G + L E N + P +SP GR + FS+ D+ Sbjct: 143 SLGAGEVWLYHVAGGEGIKLTERPNEEKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDS 202 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 +Y I G E L+ A P Sbjct: 203 VKGIYKIKRYDTETGDIEVLVEGTGGAIRPT 233 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 99/251 (39%), Gaps = 31/251 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + SPN + + + DI ++ + K + + + Sbjct: 24 EQVKIDVSEGTWMNISVSPNGKTIVF--DMLGDIYQIPMQ----GGEAKVLAKGIAWQMQ 77 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV---- 317 P +S +GK + ++ +I+ +D + +T+ F + S ++SPDS +V Sbjct: 78 PTYSPDGKYIAFTSDENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKH 137 Query: 318 FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS------- 367 + R G ++++ G + +++ ++E +P +SP G I F++ + Sbjct: 138 YTGSRSLGAGEVWLYHVAGGEGIKLTERPNEEKDLGEPAYSPDGRYIYFSQDATPGKTFH 197 Query: 368 ------GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + I + +LVE PT SP G L + ++ S LY Sbjct: 198 YSKDSVKGIYKIKRYDTETGDIEVLVEGTGGAIRPTPSPDGTKLAYIKRDG--FQSSLYL 255 Query: 421 IDL-NGRNETL 430 +DL +G+ E L Sbjct: 256 LDLKSGKKEKL 266 Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 104/296 (35%), Gaps = 42/296 (14%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + + G + L +P +SP+ + +A+ Sbjct: 32 EGTWMNISVSPNGKTIVFDMLGDIYQIPMQGGEAKVLAKG-IAWQMQPTYSPDGKYIAFT 90 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D+ +++MD ++ +P +S + + + + + A ++ Sbjct: 91 S-DENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEV 149 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 150 WLYHVAGGEGIKLTERPNEEKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKI 209 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + + + P SP G +A+ K G + ++ ++ ++ L Sbjct: 210 KRYDTETGDIEVLV-EGTGGAIRPTPSPDGTKLAYIKRDGFQSSLYLLDLKSGKKEKLYG 268 Query: 389 --DSNLQA--------P--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 D ++Q P +W+ + ++F G K+ +D+ ++ I Sbjct: 269 KLDRDMQETWAIHGVYPTMSWTADNQEIVFWA------GGKINKLDVESKSVKQIP 318 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 139/401 (34%), Gaps = 71/401 (17%) Query: 99 RFQDWNSLGAQVLV-----TGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 W S +Q LV TG G E L+ V + I + + + Sbjct: 121 NSPAW-SPDSQYLVARKHYTGS-RSLGAG----EVWLYHVAGGEGIKLTERPNEEKDLGE 174 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 A D Y + + + S S + D + +I L Sbjct: 175 PA-YSPDGRYIYFSQDATPGKT----FHYSKDSVKGIYKIKRYDTETGDIEVLVEGTGGA 229 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAP 263 + P SP+ K+AY D +YL+D + + K G + Sbjct: 230 I-RPTPSPDGTKLAYIKRD-GFQSSLYLLDLKSGKKEKLYGKLDRDMQETWAIHGVYPTM 287 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATER--------LTNTLFINIS--------- 306 ++++ + + I +D++S + ++ LT + Sbjct: 288 SWTADNQEIVFWA----GGKINKLDVESKSVKQIPFSVKTELTVQPAVRFEQDLDKDVFD 343 Query: 307 ------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGD 359 A SPD +++V+E+ GK + + + R++ D + P WS Sbjct: 344 VKMLRMAQVSPDGNKVVYEA--LGKLWVKSLSNKSDKHSRLTNLDADLRELYPQWSRDSR 401 Query: 360 LIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 I FT + ++ + V++ + + L E PT+SP G +++ + K G K Sbjct: 402 SIVFTTWDDQDQGTVKVIRVRNKRIKTLTKEPGKYVEPTFSPDGSFVVYRKTKGGYITPK 461 Query: 418 -------LYSIDLNGRNETLIN----TPAYASDPQWVGFMD 447 LY +D+ G+ T I P + +D Q V FMD Sbjct: 462 TWSQDTGLYKVDIKGKQNTRITPDGYQPQFGADSQRVYFMD 502 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 21/202 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALISVQ 277 SP+ KV Y L V + + D+ R+ N + L P++S + + + + Sbjct: 353 SPDGNKVVYEALGK---LWVKSLSNKSDKHS-RLTNLDADLRELYPQWSRDSRSIVFTTW 408 Query: 278 KD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQ 327 D + + + +++ + LT + ++SPD S +V+ + G Sbjct: 409 DDQDQGTVKVIRVRNKRIKTLTKEPGKYVEPTFSPDGSFVVYRKTKGGYITPKTWSQDTG 468 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LY + G RI+ D + P + + F GE + DG Q+R+ Sbjct: 469 LYKVDIKGKQNTRITPDG----YQPQFGADSQRVYFMDQ-GETPEFASINLDGFQKRVHY 523 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 SP G+ L F+ + Sbjct: 524 TSKLGTEFRISPDGKQLAFAER 545 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 10/129 (7%) Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD+E K Q+ + +Q +I E ++ + SP G I F I + Sbjct: 6 TSDKEPKWQVNAPANAPFEQVKI-DVSEGTWMNISVSPNGKTIVFDMLGD----IYQIPM 60 Query: 379 DGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY- 436 G + ++L + Q PT+SP G+ + F+ ++G G ++ +D +G N + + Sbjct: 61 QGGEAKVLAKGIAWQMQPTYSPDGKYIAFTSDENG--GDNIWIMDADGSNPRAVTDETFR 118 Query: 437 -ASDPQWVG 444 + P W Sbjct: 119 LLNSPAWSP 127 >gi|332662868|ref|YP_004445656.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] gi|332331682|gb|AEE48783.1| amidohydrolase [Haliscomenobacter hydrossis DSM 1100] Length = 1078 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 25/209 (11%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + S +GK + + D IY++ Q L + YSPD Sbjct: 34 STTEGTWMNLDVSPDGKDIVFDLLGD----IYAISAQGGEARLLRGGHAFEVQPKYSPDG 89 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FTKFSG- 368 +I+F SD G + +VM +G + ++I+++ + +W+P G+ I FT Sbjct: 90 QKILFTSDAGGGDNAWVMDRDGKNARQITKEDFRLVNNSIWTPDGEYIITRKHFTSQRSL 149 Query: 369 EKFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRK--------KDGDTGS 416 + + G + L + +L P SP GR + +S + D + Sbjct: 150 GAGELWMYHLSGGKGIQLTSRKNDQQDLNEPNISPDGRYVYYSEDMSAGGIFQYNKDPNN 209 Query: 417 KLYSI----DLNGRNETLINTPAYASDPQ 441 +++ I G+ ET+ A PQ Sbjct: 210 QIFVIKQFDRETGKIETITGGAGGAVRPQ 238 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 30/231 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + D+L + + + + + P++S +G++ L + Sbjct: 46 SPDGKDIVF------DLLGDIYAISAQGGEARLLRGGHAFEVQPKYSPDGQKILFTSDAG 99 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIV----FESDRE-GKEQLYVMQS 333 + + +D ++T F ++ S ++PD I+ F S R G +L++ Sbjct: 100 GGDNAWVMDRDGKNARQITKEDFRLVNNSIWTPDGEYIITRKHFTSQRSLGAGELWMYHL 159 Query: 334 NGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTK--FSGEKF--------AIGVMKK--- 378 +G +++ K +P SP G + +++ +G F I V+K+ Sbjct: 160 SGGKGIQLTSRKNDQQDLNEPNISPDGRYVYYSEDMSAGGIFQYNKDPNNQIFVIKQFDR 219 Query: 379 -DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 G E + P S +G+ L F R+ T S LY +L E Sbjct: 220 ETGKIETITGGAGGAVRPQVSRNGKLLAFVRRV--RTQSVLYIRNLETARE 268 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 20/197 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN++ + + + + + P+R+ P FS +GK L D Sbjct: 359 APNEKYIVF------NAVGYLWKKDLPNGTPQRLTKSTDFEFEPTFSPDGKSLLYVTHND 412 Query: 280 EAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQLY 329 A + + L + A ++ + +YSPD IVF+ D K +Y Sbjct: 413 SASGTLRRIQLDNTAASPVSTEPANYRTPAYSPDGQLIVFKKDGSSAAMGPANTAKPGIY 472 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +++ +G I+ +P ++ +GD I +T G ++G K DG+ ER+ + Sbjct: 473 LLKVSGGPATFITAQGN----NPRFNAKGDRIYYTLGGGMNMSMGSCKLDGTDERIHLRS 528 Query: 390 SNLQAPTWSPSGRSLIF 406 + T SP + + F Sbjct: 529 TYGSQFTVSPDEKWVAF 545 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 113/370 (30%), Gaps = 77/370 (20%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 ++D+ I A + H ++ + + +ILF S++ Sbjct: 53 VFDLLG--DIYAISAQGGEARLLRGGHAF--EVQPKYSPDG----QKILFTSDAGGGDNA 104 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTR 245 VMDRDG N R +T +++ ++P+ + + + + +++ Sbjct: 105 ----WVMDRDGKNARQITKEDFRLVNNSIWTPDGEYIITRKHFTSQRSLGAGELWMYHLS 160 Query: 246 IDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQKDEAMDIYSV---DLQ 290 + + N + + P S +G+ S KD I+ + D + Sbjct: 161 GGKGIQLTSRKNDQQDLNEPNISPDGRYVYYSEDMSAGGIFQYNKDPNNQIFVIKQFDRE 220 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG----------SDQKR 340 + E +T + S + + F + LY+ S ++ Sbjct: 221 TGKIETITGGAGGAVRPQVSRNGKLLAFVRRVRTQSVLYIRNLETAREWPVYNQLSKDQQ 280 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL------VEDSNLQA 394 + Y W+P I I + +G + + V A Sbjct: 281 EAWTIFGCYPGYAWTPDDQSIVIWANG----KINKVDVNGFNKSVEIPFTCQVNQRVYDA 336 Query: 395 PTW-------------------SPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTP 434 + +P+ + ++F + L+ DL NG + L + Sbjct: 337 VRFKQALNPATFDAKVIRHVATAPNEKYIVF------NAVGYLWKKDLPNGTPQRLTKST 390 Query: 435 AYASDPQWVG 444 + +P + Sbjct: 391 DFEFEPTFSP 400 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 107/327 (32%), Gaps = 61/327 (18%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQ 224 T + +R F S+ + L + G LT ++ Q L EP SP+ + Sbjct: 131 TPDGEYIITRKHFTSQRSLGAG---ELWMYHLSGGKGIQLTSRKNDQQDLNEPNISPDGR 187 Query: 225 KVAYATYDDEDILRVYLMD-----------TRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 V Y+ + Y D R + I + P+ S NGK Sbjct: 188 YVYYSEDMSAGGIFQYNKDPNNQIFVIKQFDRETGKIETITGGAGGAVRPQVSRNGKLLA 247 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---------A--SYSPDSSQIVFESDR 322 + +Y +L++ + N L + +++PD IV + Sbjct: 248 FVRRVRTQSVLYIRNLETAREWPVYNQLSKDQQEAWTIFGCYPGYAWTPDDQSIVIWA-- 305 Query: 323 EGKEQLYVMQSNG-----------------SDQKRISQDKEASYFDP------VWSPQGD 359 ++ + NG D R Q + FD +P Sbjct: 306 --NGKINKVDVNGFNKSVEIPFTCQVNQRVYDAVRFKQALNPATFDAKVIRHVATAPNEK 363 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 I F + + L + ++ + PT+SP G+SL++ D +G+ L Sbjct: 364 YIVFNAVG----YLWKKDLPNGTPQRLTKSTDFEFEPTFSPDGKSLLYVTHNDSASGT-L 418 Query: 419 YSIDLNGRNETLINT-PAYASDPQWVG 444 I L+ + ++T PA P + Sbjct: 419 RRIQLDNTAASPVSTEPANYRTPAYSP 445 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V G+ ++ E ++ + SP G I F I + G + RLL Sbjct: 21 VNNPPGTFKEVAFSTTEGTWMNLDVSPDGKDIVFDLLGD----IYAISAQGGEARLLRGG 76 Query: 390 SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + P +SP G+ ++F+ G + + +D +G+N I Sbjct: 77 HAFEVQPKYSPDGQKILFTSDAGGGDNA--WVMDRDGKNARQIT 118 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 86/275 (31%), Gaps = 51/275 (18%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDIL---------RVYLMDTRIDRAPKRIGNF 256 P+ S N + +A+ + R + + ++ + + Sbjct: 226 TITGGAGGAVRPQVSRNGKLLAFVRRVRTQSVLYIRNLETAREWPVYNQLSKDQQEAWTI 285 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS---NATERLT---NTLFINI----- 305 ++ + + +I I VD+ + T N + Sbjct: 286 FGCYPGYAWTPDDQSIVIWA----NGKINKVDVNGFNKSVEIPFTCQVNQRVYDAVRFKQ 341 Query: 306 ---SASYS----------PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 A++ P+ IVF + L+ +R+++ + F+P Sbjct: 342 ALNPATFDAKVIRHVATAPNEKYIVFNA----VGYLWKKDLPNGTPQRLTKSTD-FEFEP 396 Query: 353 VWSPQGDLIAF-TKFSGEKFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIF---- 406 +SP G + + T + ++ D + + E +N + P +SP G+ ++F Sbjct: 397 TFSPDGKSLLYVTHNDSASGTLRRIQLDNTAASPVSTEPANYRTPAYSPDGQLIVFKKDG 456 Query: 407 SRKKDGDTG---SKLYSIDLNGRNETLINTPAYAS 438 S G +Y + ++G T I Sbjct: 457 SSAAMGPANTAKPGIYLLKVSGGPATFITAQGNNP 491 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 64/230 (27%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ Q + F +G A + Sbjct: 441 PAYSPDGQLIV-------------------------------------FKKDGSSAAMGP 463 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 IY + + +T + ++ +I + + + +G+ Sbjct: 464 ANTAKPGIYLLKVSGGPATFIT---AQGNNPRFNAKGDRIYYTLGGGMNMSMGSCKLDGT 520 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 D++ + S F SP +AF + + + S L + P Sbjct: 521 DERIHLRSTYGSQF--TVSPDEKWVAFV----DLHKVYIAAFPHSGTTLNLGSGGTDFPV 574 Query: 397 ------------WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 WS S + L ++ G++ +SI L R E + N P Sbjct: 575 KQVAKDAGINLHWSASSKILHYT------LGNQYFSIPLEDRFEFIANKP 618 >gi|163788836|ref|ZP_02183281.1| peptidase S41 [Flavobacteriales bacterium ALC-1] gi|159876073|gb|EDP70132.1| peptidase S41 [Flavobacteriales bacterium ALC-1] Length = 1090 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESD 321 P S GKRA+ + +I++V ++ + +TN+ + + S +SP +I + SD Sbjct: 307 PNLSPKGKRAIF----EHRGEIFTVPKENGTWKNITNSPGVADRSPIWSPKGDKIAWFSD 362 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + G+ QL + +G + + I YF P WSP G IA++ + + ++ + Sbjct: 363 KGGEYQLMLADQDGQNAEAIKLPNPTFYFQPDWSPDGKYIAYS---DTHYNVWILNLETK 419 Query: 382 QERLLVEDS-----NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-A 435 + R + D P WSP + + F +++D S +++ +++ + + P A Sbjct: 420 KTRKVATDRYAHPNRTMNPVWSPDSKWIAFPKQQDSHFKS-IFAYNVDSKKTIQLTDPIA 478 Query: 436 YASDPQW 442 A P W Sbjct: 479 DAITPVW 485 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 25/203 (12%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R+ + +P FS++GK + Q D +D++ + + +RLT + Sbjct: 49 GGTAIRLTSDDGYESSPHFSNDGKMIAFTAQYDGNVDVFVMPSEGGEPKRLTYHPGGDFV 108 Query: 307 ASYSPDSSQIVFESDREGKE----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++PD + ++F S RE + + + + + G K + + A S G IA Sbjct: 109 QGWTPDGN-VLFRSGREAQPTMTNKFFTVSTKGGLPKALDIPRAAY---GELSSDGKHIA 164 Query: 363 FT-----------KFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRK 409 +T G+ I V+ + + + P W G + F + Sbjct: 165 YTPITGWDAEWRNYRGGQAMPIWVVDMKTKDLVRTSQPTGERHLDPVWL-DGN-VYFMSE 222 Query: 410 KDGDTGSKLYSIDLNGRNETLIN 432 + D ++S + + + E I Sbjct: 223 R--DYTMNIWSFNPSTKEEKQIT 243 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 55/347 (15%), Positives = 126/347 (36%), Gaps = 58/347 (16%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS-- 192 + + K F S A I Y ++ + I + + +N Sbjct: 125 AQPTMTNKFFTVSTKGGLPKALDIPRAAYGELSSDG----KHIAYTPITGWDAEWRNYRG 180 Query: 193 -----LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V+D ++ + + +P + + Y + + + ++ + Sbjct: 181 GQAMPIWVVDMKTKDLVRTSQPTGERHLDPVW-LDGN--VYFMSERDYTMNIWSFNPST- 236 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--------- 298 + K+I + + S + + I ++ + +YS S T++L Sbjct: 237 KEEKQITFHKKFDVK---SLDASKNKIVYEQGGYLHVYS--PSSGNTKQLNIDVKADLNF 291 Query: 299 -NTLFINIS------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + N+S + SP + +F E + +++ + K I+ + Sbjct: 292 YRAKWDNVSAFQLSNPNLSPKGKRAIF----EHRGEIFTVPKENGTWKNITNSPGVADRS 347 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDG--SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 P+WSP+GD IA+ G ++ + + +DG ++ L + P WSP G+ + +S Sbjct: 348 PIWSPKGDKIAWFSDKGGEYQLMLADQDGQNAEAIKLPNPTFYFQPDWSPDGKYIAYS-- 405 Query: 410 KDGDTGSKLYSIDLNGRNETLINT-----------PAYASDPQWVGF 445 DT ++ ++L + + T P ++ D +W+ F Sbjct: 406 ---DTHYNVWILNLETKKTRKVATDRYAHPNRTMNPVWSPDSKWIAF 449 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 26/197 (13%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + D ++ + RLT+ S +S D I F + +G + Sbjct: 31 GDNVVFVYAND----LWKASVNGGTAIRLTSDDGYESSPHFSNDGKMIAFTAQYDGNVDV 86 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----AIGVMKKDGSQER 384 +VM S G + KR++ F W+P G+ + F + + G + Sbjct: 87 FVMPSEGGEPKRLTY-HPGGDFVQGWTPDGN-VLFRSGREAQPTMTNKFFTVSTKGGLPK 144 Query: 385 LLVEDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSKLYSIDLNGRNETLINTPA 435 L + S G+ + ++ R G ++ +D+ ++ + P Sbjct: 145 AL-DIPRAAYGELSSDGKHIAYTPITGWDAEWRNYRGGQAMPIWVVDMKTKDLVRTSQPT 203 Query: 436 YAS--DPQW----VGFM 446 DP W V FM Sbjct: 204 GERHLDPVWLDGNVYFM 220 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 107/312 (34%), Gaps = 51/312 (16%) Query: 168 GEKGDF------NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 GDF + +LF S + N + G + L R S Sbjct: 102 HPGGDFVQGWTPDGNVLFRSGREAQPTMTNKFFTVSTKGGLPKALDIPRAAYGEL---SS 158 Query: 222 NQQKVAYA----------TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + + +AY Y + ++++D + + L P + +G Sbjct: 159 DGKHIAYTPITGWDAEWRNYRGGQAMPIWVVDMKTKDLVRTSQPTGERHLDPVW-LDGN- 216 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++D M+I+S + + +++T ++ S ++IV+ E L+V Sbjct: 217 VYFMSERDYTMNIWSFNPSTKEEKQITFHKKFDVK-SLDASKNKIVY----EQGGYLHVY 271 Query: 332 QSNGSDQKRISQDKEASYF---------------DPVWSPQGDLIAFTKFSGEKFAIGVM 376 + + K+++ D +A +P SP+G F I + Sbjct: 272 SPSSGNTKQLNIDVKADLNFYRAKWDNVSAFQLSNPNLSPKGKRAIFEHRG----EIFTV 327 Query: 377 KKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--N 432 K+ + + ++P WSP G + + K G+ +L D +G+N I Sbjct: 328 PKENGTWKNITNSPGVADRSPIWSPKGDKIAWFSDKGGE--YQLMLADQDGQNAEAIKLP 385 Query: 433 TPAYASDPQWVG 444 P + P W Sbjct: 386 NPTFYFQPDWSP 397 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 66/168 (39%), Gaps = 9/168 (5%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L + D+DG N + F+P +SP+ + +AY+ V++++ Sbjct: 361 SDKGGEYQLMLADQDGQNAEAIKLPNPTFYFQPDWSPDGKYIAYSDTH----YNVWILNL 416 Query: 245 RIDRAPKRIGN---FRSMILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERLTNT 300 + K + + + P +S + K Q+D I++ ++ S T +LT+ Sbjct: 417 ETKKTRKVATDRYAHPNRTMNPVWSPDSKWIAFPKQQDSHFKSIFAYNVDSKKTIQLTDP 476 Query: 301 LFINISASYSPDSSQIV-FESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + I+ + + S G + ++ SN +++ A Sbjct: 477 IADAITPVWDASGKYLYTLASTNYGLQSGWLDMSNYDPAANLTRSLYA 524 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 21/211 (9%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L +G LT S D P FS + + +A+ D + + V++M + P Sbjct: 40 NDLWKASVNGGTAIRLT-SDDGYESSPHFSNDGKMIAFTAQYDGN-VDVFVMPSE-GGEP 96 Query: 251 KRIGNFRSMILAPRFSSNGKRALIS---VQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 KR+ ++ +G S Q ++V + + L Sbjct: 97 KRLTYHPGGDFVQGWTPDGNVLFRSGREAQPTMTNKFFTVSTKGGLPKALDIPRAAYGE- 155 Query: 308 SYSPDSSQIVFE----------SDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSP 356 S D I + + R G+ ++V+ D R SQ + DPVW Sbjct: 156 -LSSDGKHIAYTPITGWDAEWRNYRGGQAMPIWVVDMKTKDLVRTSQPTGERHLDPVWL- 213 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 G+ + F I +E+ + Sbjct: 214 DGN-VYFMSERDYTMNIWSFNPSTKEEKQIT 243 >gi|300789887|ref|YP_003770178.1| hypothetical protein AMED_8073 [Amycolatopsis mediterranei U32] gi|299799401|gb|ADJ49776.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 922 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 9/195 (4%) Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + D + L+ S +G+ + D I+ + RLT+ L Sbjct: 23 DLQPDGGRAGVVLREGTNLSAALSPDGRWIAV----DLVTGIWVLPAGGGRARRLTDDLQ 78 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++SPD ++VF+S R+G LYV+ + G +++++ + + +PV+SP G +A Sbjct: 79 DATLPTWSPDGRRLVFQSYRDGNFHLYVIDAAGGTPRKLTEGRF-DHREPVFSPDGTKLA 137 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F+ + I ++ +V + + +P WS G ++F+ DT + ++ Sbjct: 138 FSSDRDGSYGIHLLDLASGAISTVVSTPDEEASPRWSADGTKIVFTVN---DTAIDVVTL 194 Query: 422 DLNGRNETLINTPAY 436 R + T A Sbjct: 195 ATGARTRLVTATGAD 209 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 17/211 (8%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + DG + R+ SP+ + +A D++ + +R+ + Sbjct: 24 LQPDGGRAGVVL--REGTNLSAALSPDGRWIAV------DLVTGIWVLPAGGGRARRLTD 75 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P +S +G+R + +D +Y +D +LT F + +SPD ++ Sbjct: 76 DLQDATLPTWSPDGRRLVFQSYRDGNFHLYVIDAAGGTPRKLTEGRFDHREPVFSPDGTK 135 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + F SDR+G ++++ + + D+EAS P WS G I FT + Sbjct: 136 LAFSSDRDGSYGIHLLDLASGAISTVVSTPDEEAS---PRWSADGTKIVFTVNDTAIDVV 192 Query: 374 GVMKKDGSQERLLVEDSNLQ--APTWSPSGR 402 + G++ RL+ + P + P G+ Sbjct: 193 TL--ATGARTRLVTATGADKLYGPAFGPGGQ 221 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 94/270 (34%), Gaps = 36/270 (13%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V + V D D + + + + P S + +++A+ L + Sbjct: 285 VSTAPRDYRRRVRDLDSPAPKPV-----RGIASPVVSRDGKRIAF------RALNAIYVV 333 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 P+R+ P F +G + L + + D++ DL + LT Sbjct: 334 AAGGGRPQRLIGDGYFNSDPDFHPDGTKLLYTSDRLGTADLWLHDLGTGTDTVLTQLAGA 393 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++ +SPD ++ + D++G ++ + ++++ P WSP G ++A Sbjct: 394 QVAPRWSPDGGRVAYA-DQDGAT--WIHDVASNSAQQVTPPLFMP-GRPTWSPDGSVLAL 449 Query: 364 T-------KFSGEKFAIGVMKKDGSQERLL-------VEDSNLQAPTWSPSGRSLIFSRK 409 ++ I + + R P WSP GR L F+ Sbjct: 450 AAVKPYSKRYREGTSQILTVDLKTHELRYAEPMPFRSFATRGDDGPLWSPDGRYLAFTV- 508 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASD 439 ++ + + +D GR LI P + Sbjct: 509 ---ESVAWIAPVDGTGR---LIGAPRQVTH 532 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 7/144 (4%) Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N+SA+ SPD I + ++V+ + G +R++ D + P WSP G + Sbjct: 38 GTNLSAALSPDGRWIA----VDLVTGIWVLPAGGGRARRLTDDLQ-DATLPTWSPDGRRL 92 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 F + F + V+ G R L E + + P +SP G L FS +DG G L Sbjct: 93 VFQSYRDGNFHLYVIDAAGGTPRKLTEGRFDHREPVFSPDGTKLAFSSDRDGSYGIHLLD 152 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 + +G T+++TP + P+W Sbjct: 153 L-ASGAISTVVSTPDEEASPRWSA 175 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 101/323 (31%), Gaps = 80/323 (24%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQ------------------------------ 224 V GA R +T + L+ P F P Q Sbjct: 192 VTLATGARTRLVTATGADKLYGPAFGPGGQPSYLRLRGAEADLMLGDEQLTKGEDVFGFA 251 Query: 225 ------KVAYATYDD----------EDILRVYLMDTRIDRAPKRIGNFRS-------MIL 261 V Y +DI + T +R+ + S I Sbjct: 252 ANWSGSAVLYTADGHIRWREQSGAVKDIPFEAGVSTAPRDYRRRVRDLDSPAPKPVRGIA 311 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +P S +GKR IY V +RL + N + PD +++++ SD Sbjct: 312 SPVVSRDGKRIAFRA----LNAIYVVAAGGGRPQRLIGDGYFNSDPDFHPDGTKLLYTSD 367 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R G L++ ++Q + P WSP G +A+ G + + Sbjct: 368 RLGTADLWLHDLGTGTDTVLTQLA-GAQVAPRWSPDGGRVAYADQDGAT---WIHDVASN 423 Query: 382 QERLLVEDSNLQA-PTWSPSGRSLIFS-----RKKDGDTGSKLYSIDLNGRNETLI---- 431 + + + PTWSP G L + K+ + S++ ++DL Sbjct: 424 SAQQVTPPLFMPGRPTWSPDGSVLALAAVKPYSKRYREGTSQILTVDLKTHELRYAEPMP 483 Query: 432 ---------NTPAYASDPQWVGF 445 + P ++ D +++ F Sbjct: 484 FRSFATRGDDGPLWSPDGRYLAF 506 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 97/309 (31%), Gaps = 59/309 (19%) Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY--------------QSITGE 169 R R D K + G ++IA + IY Sbjct: 292 YRRRVRDLDSPAPKPVRGIASPVVSRDGKRIAFRALNAIYVVAAGGGRPQRLIGDGYFNS 351 Query: 170 KGDFN---SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 DF+ +++L+ S+ + + L + D G + PR+SP+ +V Sbjct: 352 DPDFHPDGTKLLYTSDRLGTA----DLWLHDL-GTGTDTVLTQLAGAQVAPRWSPDGGRV 406 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-------QKD 279 AYA D + + +++ M P +S +G ++ ++ Sbjct: 407 AYADQDG-----ATWIHDVASNSAQQVTPPLFMPGRPTWSPDGSVLALAAVKPYSKRYRE 461 Query: 280 EAMDIYSVDLQSNATE-------RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 I +VDL+++ R T + +SPD + F + ++ Sbjct: 462 GTSQILTVDLKTHELRYAEPMPFRSFATRG-DDGPLWSPDGRYLAFTVE----SVAWIAP 516 Query: 333 SNG-----SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +G ++++ D S D + + K + K G + R + Sbjct: 517 VDGTGRLIGAPRQVTHDVTDSLAWQ----GNDTLVYLS----KGRLKAQKIAGGEPRTIR 568 Query: 388 EDSNLQAPT 396 D P Sbjct: 569 LDFTWARPR 577 Score = 36.9 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 7/68 (10%) Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AY 436 DG + +++ + + SP GR + D + ++ + G + Sbjct: 26 PDGGRAGVVLREGTNLSAALSPDGRWIAV------DLVTGIWVLPAGGGRARRLTDDLQD 79 Query: 437 ASDPQWVG 444 A+ P W Sbjct: 80 ATLPTWSP 87 >gi|308047731|ref|YP_003911297.1| amidohydrolase [Ferrimonas balearica DSM 9799] gi|307629921|gb|ADN74223.1| amidohydrolase [Ferrimonas balearica DSM 9799] Length = 1064 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 27/231 (11%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 DD+ V ++ + M L S +GK + + D IY++ + Sbjct: 26 DDKPTWDVNAPQGPMETIQINVSQGTWMNL--DISPDGKTLVFDLLGD----IYTMPIGG 79 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L + ++ +SPD ++I F SD++G + ++ ++ +GSD + ++++ Sbjct: 80 GDATPLVKGIAWHMQPRFSPDGTRIAFTSDQDGGDNIWTVKLDGSDMQPVTKETFRLLNS 139 Query: 352 PVWSPQGDLIA----FTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGR 402 P WSP G + +T + + G + L E N Q P +SP GR Sbjct: 140 PAWSPDGQYLVGRKHYTAQRSLGAGEVWMYHISGGKGIQLTERPNDQKDLGEPAFSPDGR 199 Query: 403 SLIFSRK--------KDGDTGSKLYSI----DLNGRNETLINTPAYASDPQ 441 + FS+ D+ +Y I G E L+ A P Sbjct: 200 YIYFSQDATPGKTFHYSKDSVKGIYKIQRYDRQTGEIEVLLEGSGGAIRPT 250 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 30/235 (12%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + + DI + + K I + PRFS +G R + + Sbjct: 57 ISPDGKTLVF--DLLGDIYTMPIGGGDATPLVKGIAWH----MQPRFSPDGTRIAFTSDQ 110 Query: 279 DEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQ 332 D +I++V L + + +T F + S ++SPD +V + + R G ++++ Sbjct: 111 DGGDNIWTVKLDGSDMQPVTKETFRLLNSPAWSPDGQYLVGRKHYTAQRSLGAGEVWMYH 170 Query: 333 SNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMK 377 +G ++++ +P +SP G I F++ + + I Sbjct: 171 ISGGKGIQLTERPNDQKDLGEPAFSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKIQRYD 230 Query: 378 KDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + +L+E PT SP GR L + + S LY DL ++ + Sbjct: 231 RQTGEIEVLLEGSGGAIRPTPSPDGRQLAYIARDG--FQSALYLYDLESGDKRQV 283 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 85/248 (34%), Gaps = 36/248 (14%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M G + L +PRFSP+ ++A+ + D + D P Sbjct: 71 DIYTMPIGGGDATPLVKG-IAWHMQPRFSPDGTRIAFTSDQDGGDNIWTVKLDGSDMQPV 129 Query: 252 RIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDIYSVDLQSNATERLTNTLFIN-- 304 FR + +P +S +G+ + + Q+ A +++ + +LT Sbjct: 130 TKETFRLLN-SPAWSPDGQYLVGRKHYTAQRSLGAGEVWMYHISGGKGIQLTERPNDQKD 188 Query: 305 -ISASYSPDSSQIVFESDRE-------------GKEQLYVMQSNGSDQKRISQDKEASYF 350 ++SPD I F D G ++ + + + + Sbjct: 189 LGEPAFSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKIQRYDRQTGEIEVLL-EGSGGAI 247 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA----------PT--WS 398 P SP G +A+ G + A+ + + +R + D + PT W+ Sbjct: 248 RPTPSPDGRQLAYIARDGFQSALYLYDLESGDKRQVYADLDRDMQETWAIHGVYPTMAWT 307 Query: 399 PSGRSLIF 406 P +++F Sbjct: 308 PDNDAILF 315 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 108/324 (33%), Gaps = 69/324 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YAT 230 +RI F S+ + + DG++++ +T ++L P +SP+ Q + Y Sbjct: 102 TRIAFTSDQDGGDN----IWTVKLDGSDMQPVTKETFRLLNSPAWSPDGQYLVGRKHYTA 157 Query: 231 YDDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQK 278 V++ + + N + + P FS +G+ S K Sbjct: 158 QRSLGAGEVWMYHISGGKGIQLTERPNDQKDLGEPAFSPDGRYIYFSQDATPGKTFHYSK 217 Query: 279 D---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D I D Q+ E L I + SPD Q+ + + + LY+ Sbjct: 218 DSVKGIYKIQRYDRQTGEIEVLLEGSGGAIRPTPSPDGRQLAYIARDGFQSALYLYDLES 277 Query: 336 SDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-- 383 D++++ + Y W+P D I F ++G I + D + Sbjct: 278 GDKRQVYADLDRDMQETWAIHGVYPTMAWTPDNDAILF--WAGG--EIRKLTLDSGEVEA 333 Query: 384 ---RLLVE---------DSNLQAPTW----------SPSGRSLIFSRKKDGDTGSKLYSI 421 ++ V+ NL + SP G + F + K++ Sbjct: 334 IPFQVTVDKQVQPALRFQQNLDEDRFDLKMLRQVQISPDGEQVAF------EALGKIWLR 387 Query: 422 DL-NGRNETLI-NTPAYASDPQWV 443 L +G+ + L + P W Sbjct: 388 SLPDGKPQRLTRQDDTFELFPAWS 411 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 40/251 (15%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + LT D P +S + +K+AY T+DD++ +V + D R R I Sbjct: 390 PDGK-PQRLTRQDDTFELFPAWSRDGRKLAYVTWDDKEQGQVVVRDLRRKRNT-VITVEP 447 Query: 258 SMILAPRFSSNGKRALISVQK---------DEAMDIYSVDLQSNA--TERLTNTLFINIS 306 + P FS +G+ + K + IY VDL + +R++ Sbjct: 448 GKYVEPAFSPDGEALVFRKSKGYYITPRSWNREPGIYWVDLDAKKAEPQRISRRGHT--- 504 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + S ++ F + GK L + ++G + +R+ + + V SP G +AF + Sbjct: 505 PHFGGQSDRVFFSTMEGGKTALASVGTHGFE-ERVHFTSDHASEWHV-SPDGKHLAFAER 562 Query: 367 ----------SGEKFAIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 GE +G DG + L + + +W G+SL +S Sbjct: 563 FKVFLTPFAQHGETLHLG---PDGGSLPVKQLSQRAGENI-SWRLDGQSLHWS------L 612 Query: 415 GSKLYSIDLNG 425 G LY + L+G Sbjct: 613 GPNLYQVSLDG 623 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 91/254 (35%), Gaps = 43/254 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++P+ + + + +I ++ L ++ P ++ + + A RF Sbjct: 305 AWTPDNDAILF--WAGGEIRKLTLDSGEVEAIPFQVTVDKQVQPALRFQQNLDEDRFDLK 362 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIV 317 S +G++ I+ L +RLT + ++S D ++ Sbjct: 363 MLRQVQISPDGEQVAFEA----LGKIWLRSLPDGKPQRLTRQDDTFELFPAWSRDGRKLA 418 Query: 318 F-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-------- 368 + D + + Q+ V I+ + Y +P +SP G+ + F K G Sbjct: 419 YVTWDDKEQGQVVVRDLRRKRNTVITVE-PGKYVEPAFSPDGEALVFRKSKGYYITPRSW 477 Query: 369 -EKFAIGVMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + I + D + + + + P + + FS + G T L S+ +G Sbjct: 478 NREPGIYWVDLDAKKAEPQRISRRGHT--PHFGGQSDRVFFSTMEGGKTA--LASVGTHG 533 Query: 426 RNETLINTPAYASD 439 E + T +AS+ Sbjct: 534 FEERVHFTSDHASE 547 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRS 403 + ++ + SP G + F I M G LV+ + P +SP G Sbjct: 48 SQGTWMNLDISPDGKTLVFDLLGD----IYTMPIGGGDATPLVKGIAWHMQPRFSPDGTR 103 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G ++++ L+G + + + + P W Sbjct: 104 IAFTSDQDG--GDNIWTVKLDGSDMQPVTKETFRLLNSPAWSP 144 >gi|221195922|ref|ZP_03568969.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2M] gi|221202595|ref|ZP_03575614.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2] gi|221176529|gb|EEE08957.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2] gi|221182476|gb|EEE14876.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD2M] Length = 675 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 114/312 (36%), Gaps = 60/312 (19%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + + +++L ++D DG + PR+ P +Q +A+ + D +++ Sbjct: 34 TPDRDADDYRSALWLVDIDGGRPPRQLTFGN-ADSHPRWCPGEQALAFLS-DRGSGRQIH 91 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL--------------------------- 273 + T +R+ + S +++ +S +GK+ L Sbjct: 92 AIRTD-GGEARRVTDLPSGVMSFEWSPDGKQLLALCTIAADPEQRGNTHGDSDEAADRPA 150 Query: 274 ---------------ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + D + ++++D Q+ A+ RLT F A +SPD +I F Sbjct: 151 DAPRVVWRLPYKLDGVGYTLDTEIHLHTIDAQTGASRRLTRGSFEVSEADWSPDGQRIAF 210 Query: 319 ESDREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKF 371 R+G + ++V+ ++G + ++++ AS P WSP G IA + Sbjct: 211 TRTRDGRFAHRTDVWVVDADGGNARQLTS-TIASAAFPRWSPDGRFIALIGSEHDGDAQM 269 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPT-----WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + R L +D +++ + WS L F G ++ +G Sbjct: 270 RLWLHDVRTGDTRALGDD-DIEVVSGRTVFWSHDSTRLYFVLAHHGRQEVATIAV-ADGT 327 Query: 427 NETLINTPAYAS 438 +I Sbjct: 328 LRRVITGDRQVG 339 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 97/276 (35%), Gaps = 29/276 (10%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G +LC + D D+ P + +V + + Y +DT Sbjct: 117 PDGKQLLALCTIAADPEQRGNTHGDSDEAADRPA---DAPRVVW-RLPYKLDGVGYTLDT 172 Query: 245 RIDRAP--------KRIGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQSN 292 I +R+ + +S +G+R + +D D++ VD Sbjct: 173 EIHLHTIDAQTGASRRLTRGSFEVSEADWSPDGQRIAFTRTRDGRFAHRTDVWVVDADGG 232 Query: 293 ATERLTNTLFINISASYSPDSSQIVFE-SDREG--KEQLYVMQSNGSDQKRISQDK--EA 347 +LT+T+ +SPD I S+ +G + +L++ D + + D Sbjct: 233 NARQLTSTIASAAFPRWSPDGRFIALIGSEHDGDAQMRLWLHDVRTGDTRALGDDDIEVV 292 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 S WS + F + + + DG+ R++ D + +G L++ Sbjct: 293 SGRTVFWSHDSTRLYFVLAHHGRQEVATIAVADGTLRRVITGDRQVGRFALGANG--LLY 350 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 + D T + +++ L+G E + +P W Sbjct: 351 TSD-DARTPADIWTAALDGSGERRLT----DFNPWW 381 >gi|159901043|ref|YP_001547290.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894082|gb|ABX07162.1| serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 646 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 97/240 (40%), Gaps = 25/240 (10%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + +ED + P+++ S +G++ + ++D +Y Sbjct: 367 YFFVGMREEDGDYQIYRIPAMGGEPQQLTTL-GSNYGGVVSPDGRQIAFTSERDGREQVY 425 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-----EGKEQLYVMQSNGSDQKR 340 + + + R+TN S+SPD Q+ + R E +Y+ + ++ ++ Sbjct: 426 VMKVDGSDQRRVTNDPGRCEYPSWSPDGKQLAYAHRRLDDLKENSSTIYIQALDQTEGQQ 485 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKDGSQERLL--VEDSNLQA 394 +++ P W QG I FT + E+ + +++ DGS +++ D + Sbjct: 486 LTKMWG---TMPTWGQQG--IVFTSRDIVENIEQLGLAIIQPDGSGLKIINPTRDRDEHY 540 Query: 395 PTWSPSGRSLIF-SRKKDGDTGSKLYSIDLNGRNETL-------INTPAYASDPQWVGFM 446 WSP G+S+ + + +++ ++ +G N + P ++ D +W+ F+ Sbjct: 541 AEWSPDGKSIAYVAGDSQRTITRQIWVMNADGSNPHPLTKGLGGVTQPRWSPDGKWIVFL 600 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 12/146 (8%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I+F S +V I + L ++ DG+ ++ + P+RD+ +SP+ + +AY D + Sbjct: 501 IVFTSRDIVENIEQLGLAIIQPDGSGLKIINPTRDRDEHYAEWSPDGKSIAYVAGDSQRT 560 Query: 237 LRVYLMDTRIDR-APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD----------IY 285 + + D P + + PR+S +GK + + K D ++ Sbjct: 561 ITRQIWVMNADGSNPHPLTKGLGGVTQPRWSPDGKWIVF-LAKWGMPDDLQNNRPRFNVW 619 Query: 286 SVDLQSNATERLTNTLFINISASYSP 311 V + + T + + P Sbjct: 620 VVSTEGGPAKPFTISEANKFGLGWGP 645 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + + I + G + + L + SP GR + F+ ++DG + Sbjct: 366 GYFFVGMREEDGDYQIYRIPAMGGEPQQLTTLGSNYGGVVSPDGRQIAFTSERDGR--EQ 423 Query: 418 LYSIDLNGRNETLI-NTPAYASDPQWVG 444 +Y + ++G ++ + N P P W Sbjct: 424 VYVMKVDGSDQRRVTNDPGRCEYPSWSP 451 >gi|163756342|ref|ZP_02163456.1| WD40-like repeat/amidohydrolase domain protein [Kordia algicida OT-1] gi|161323694|gb|EDP95029.1| WD40-like repeat/amidohydrolase domain protein [Kordia algicida OT-1] Length = 1094 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 26/238 (10%) Query: 226 VAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +A+A + V + + + S NGK + D DI Sbjct: 17 IAFAQDKKNTEKWDVSNPKGDFNYKDHKFTTTEGTWMNLDVSPNGKTIVF----DMLGDI 72 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 Y++ + + L + I +SPD S+I+F SD G + ++VM +NGSD K+I+++ Sbjct: 73 YTIPVSGGTAKALRTGIPFEIQPHFSPDGSKILFTSDAGGGDNIWVMNANGSDAKQITKE 132 Query: 345 KEASYFDPVWSPQGD-LIAFTKFSGEKF----AIGVMKKDGSQERLLVE----DSNLQAP 395 + W P G+ IA F+ + + G + + ++ P Sbjct: 133 SFRLLNNSTWMPDGNAFIARKHFTSTRSLGAGEMWQYHITGGSGLQITKRKNAQQDVNEP 192 Query: 396 TWSPSGRSLIFSRK--------KDGDTGSKLYSIDL----NGRNETLINTPAYASDPQ 441 + SP GR L +S + D ++Y I G+ + P AS PQ Sbjct: 193 SVSPDGRYLYYSEDVYPGGSFQYNKDPNKQIYVIKRYDFQTGKTTQITGGPGGASRPQ 250 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 111/359 (30%), Gaps = 95/359 (26%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ------QKVAY 228 S+ILF S++ + VM+ +G++ + +T ++L + P+ + Sbjct: 102 SKILFTSDAGGGDN----IWVMNANGSDAKQITKESFRLLNNSTWMPDGNAFIARKHFTS 157 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS----------VQK 278 + Y + + N + + P S +G+ S K Sbjct: 158 TRSLGAGEMWQYHITGGSGLQITKRKNAQQDVNEPSVSPDGRYLYYSEDVYPGGSFQYNK 217 Query: 279 DEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D IY + D Q+ T ++T S D ++ F K LY+ Sbjct: 218 DPNKQIYVIKRYDFQTGKTTQITGGPGGASRPQISRDGKKLAFIKRVRTKSVLYLHDLQT 277 Query: 336 SDQ----------KRISQDKEASYFDPVWSPQGDLIAF---------------------- 363 ++ ++ + Y + W P + I F Sbjct: 278 GEEWPLYDALDKDQQEAWAIFGVYPNFSWMPNNNEIVFWADGKIQKINITSLQVTNIPFK 337 Query: 364 --------------TKFSGEKFAI-----GVMKKDG------------------SQERLL 386 T S + F V DG + L Sbjct: 338 VNANIQIAEAVSFNTPVSPKNFDAKVIRQAVTSPDGKTLIFNAVGYLWKKNLPNGTPKRL 397 Query: 387 VEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWV 443 + ++ ++ P++SP G+ +++ D + G+ + I +NG N ++T P + Sbjct: 398 TQGTDFESEPSFSPDGKEIVYVTWNDLNLGT-IRKISINGGNSMQLSTEKGSFRTPSFS 455 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 30/206 (14%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + + + + PKR+ P FS +GK + D Sbjct: 370 SPDGKTLIF------NAVGYLWKKNLPNGTPKRLTQGTDFESEPSFSPDGKEIVYVTWND 423 Query: 280 EAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ---------LY 329 + I + + + +L+ + S+S D + IV+ +R +Q +Y Sbjct: 424 LNLGTIRKISINGGNSMQLSTEKGSFRTPSFSLDGTHIVYRKERGNSDQGFTFAKNAGIY 483 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----AIGVMKKDGSQER 384 M+++GS+ K ++ E P++S G I F + G F A+ + G+ +R Sbjct: 484 TMKADGSNSKFVTAQGEY----PIFSADGKRI-FIQTGGTYFGSLTKALHSVNLQGNDKR 538 Query: 385 L--LVEDSNLQAPTWSPSGRSLIFSR 408 + +N P SP + + FS+ Sbjct: 539 THFTSKYANRIVP--SPDNKWIAFSQ 562 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 36/279 (12%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 T +G + + + + + + + + G + L +P FSP+ Sbjct: 43 HKFTTTEGTWMNLDVSPNGKTIVFDMLGDIYTIPVSGGTAKALRTG-IPFEIQPHFSPDG 101 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG-----KRALISVQK 278 K+ + + D +++M+ A + ++ + +G ++ S + Sbjct: 102 SKILFTS-DAGGGDNIWVMNANGSDAKQITKESFRLLNNSTWMPDGNAFIARKHFTSTRS 160 Query: 279 DEAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIV----------FESDREGK 325 A +++ + + ++T N S SPD + F+ +++ Sbjct: 161 LGAGEMWQYHITGGSGLQITKRKNAQQDVNEPSVSPDGRYLYYSEDVYPGGSFQYNKDPN 220 Query: 326 EQLYVM---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +Q+YV+ +I+ P S G +AF K K + + + Sbjct: 221 KQIYVIKRYDFQTGKTTQIT-GGPGGASRPQISRDGKKLAFIKRVRTKSVLYLHDLQTGE 279 Query: 383 ERLLVED------------SNLQAPTWSPSGRSLIFSRK 409 E L + +W P+ ++F Sbjct: 280 EWPLYDALDKDQQEAWAIFGVYPNFSWMPNNNEIVFWAD 318 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 92/298 (30%), Gaps = 51/298 (17%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYA-TYDDEDILR 238 S K + D + P+ S + +K+A+ + +L Sbjct: 212 SFQYNKDPNKQIYVIKRYDFQTGKTTQITGGPGGASRPQISRDGKKLAFIKRVRTKSVLY 271 Query: 239 VYLMDTR--------IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 ++ + T +D+ + + + N + I +++ Sbjct: 272 LHDLQTGEEWPLYDALDKDQQEAWAIFGVYPNFSWMPNNNEIVFWADG----KIQKINIT 327 Query: 291 SNATE----------RLTNTLFINI-------------SASYSPDSSQIVFESDREGKEQ 327 S ++ + N A SPD ++F + Sbjct: 328 SLQVTNIPFKVNANIQIAEAVSFNTPVSPKNFDAKVIRQAVTSPDGKTLIFNA----VGY 383 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLL 386 L+ KR++Q + +P +SP G I + ++ I + +G L Sbjct: 384 LWKKNLPNGTPKRLTQGTD-FESEPSFSPDGKEIVYVTWNDLNLGTIRKISINGGNSMQL 442 Query: 387 -VEDSNLQAPTWSPSGRSLIFSRKKDGD-------TGSKLYSIDLNGRNETLINTPAY 436 E + + P++S G +++ +++ + +Y++ +G N + Sbjct: 443 STEKGSFRTPSFSLDGTHIVYRKERGNSDQGFTFAKNAGIYTMKADGSNSKFVTAQGE 500 >gi|88704759|ref|ZP_01102472.1| peptidase yuxL [Congregibacter litoralis KT71] gi|88701080|gb|EAQ98186.1| peptidase yuxL [Congregibacter litoralis KT71] Length = 665 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 118/335 (35%), Gaps = 62/335 (18%) Query: 163 YQSITGEKGDFNSRILFVSESVVS---GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 + + + + R + + S + + +M +G +T S D PR+ Sbjct: 34 MERVRDPQISPDGRWVAYTVSQKDLEEDKSRTRIWMMSTEGGEPIPMT-SPDSSASRPRW 92 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + +++ E+ R+ ++ N + + +S +G R L++++ Sbjct: 93 SPDNKYLSFTASRGENARTQVWSLNRLGGEAMQVTNVKQGVSDFAWSPDGTRLLLTIKDP 152 Query: 280 EAMD-----------------------------------IYSVDLQSNATERLTNTLFIN 304 D +Y +A ++T + + Sbjct: 153 RPADLTEDKDDDDKPLPYVIDRMQFKQDYQGYLDRRRDHLYVYTPGDDAPVQITFGDYDD 212 Query: 305 ISASYSPDSSQIVFESDREGKE------QLYVMQSNGSDQKR--ISQDKEASYFDPVWSP 356 +SPD + F SDR ++V+ + + + I++D P WSP Sbjct: 213 DDPVWSPDGKSVAFVSDRSENPDLYYGSNIWVVDVDDENHRLKKITKDS-GRERSPSWSP 271 Query: 357 QGDLIAFTKFSGEKF---------AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLI 405 G IA+ G + + + DG + ++L D NL P +S GR + Sbjct: 272 DGKSIAYISSLGPDVGGSALTPTRRLALARLDGEKRQILTPKLDRNLSDPQFSDDGRRIS 331 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETL-INTPAYASD 439 F + +G L SI +G+N + P D Sbjct: 332 FRLEDEGQV--HLASIGTDGKNFRRDLEGPVTVRD 364 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 106/288 (36%), Gaps = 62/288 (21%) Query: 216 EPRFSPNQQKVAYATY-----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +P+ SP+ + VAY +D+ R+++M T P + + S PR+S + K Sbjct: 39 DPQISPDGRWVAYTVSQKDLEEDKSRTRIWMMSTE-GGEPIPMTSPDSSASRPRWSPDNK 97 Query: 271 RALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV----------- 317 + + E ++S++ ++TN ++SPD ++++ Sbjct: 98 YLSFTASRGENARTQVWSLNRLGGEAMQVTNVKQGVSDFAWSPDGTRLLLTIKDPRPADL 157 Query: 318 ------------FESDR------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 + DR ++ LYV +I+ + DPV Sbjct: 158 TEDKDDDDKPLPYVIDRMQFKQDYQGYLDRRRDHLYVYTPGDDAPVQITF-GDYDDDDPV 216 Query: 354 WSPQGDLIAFTKFSGEK------FAIGVMKKDGSQER---LLVEDSNLQAPTWSPSGRSL 404 WSP G +AF E I V+ D R + + ++P+WSP G+S+ Sbjct: 217 WSPDGKSVAFVSDRSENPDLYYGSNIWVVDVDDENHRLKKITKDSGRERSPSWSPDGKSI 276 Query: 405 IFSRKKDGDTGS-------KLYSIDLNGRNETLIN--TPAYASDPQWV 443 + D G +L L+G ++ SDPQ+ Sbjct: 277 AYISSLGPDVGGSALTPTRRLALARLDGEKRQILTPKLDRNLSDPQFS 324 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 350 FDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGR 402 DP SP G +A+T + + I +M +G + + DS+ P WSP + Sbjct: 38 RDPQISPDGRWVAYTVSQKDLEEDKSRTRIWMMSTEGGEPIPMTSPDSSASRPRWSPDNK 97 Query: 403 SLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYASDPQWVG 444 L F+ + + ++++S++ L G + N SD W Sbjct: 98 YLSFTASRGENARTQVWSLNRLGGEAMQVTNVKQGVSDFAWSP 140 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 22/194 (11%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL--------RVYLM 242 L + DG + LTP D+ L +P+FS + +++++ D+ + + + Sbjct: 295 RRLALARLDGEKRQILTPKLDRNLSDPQFSDDGRRISFRLEDEGQVHLASIGTDGKNFRR 354 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + + M + S++ L S+ D Y L S E L + Sbjct: 355 DLEGPVTVRDVARRGDMTVVLAESADQPANLFSLS-----DGYLSTLTSVNAELLADVSR 409 Query: 303 INIS--ASYSPDSSQI-VF----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + A S D +++ F EGK ++ +G + S +++ Sbjct: 410 PQVEKRAFASADGTEVEAFYVKPVGYEEGKRYPTILWLHGGPASQFSY--SYRDTAQLFA 467 Query: 356 PQGDLIAFTKFSGE 369 G + G Sbjct: 468 ANGYAVIMPNPRGS 481 >gi|157373159|ref|YP_001471759.1| amidohydrolase [Shewanella sediminis HAW-EB3] gi|157315533|gb|ABV34631.1| amidohydrolase [Shewanella sediminis HAW-EB3] Length = 1081 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + S NGK + D DIY + ++ + L + + YSPD I Sbjct: 53 EGTWMNVSVSPNGKHIVF----DMLGDIYQIPMKGGEAKVLAKGIAWQMQPVYSPDGKYI 108 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KFSGEKF 371 F SD +G + ++VM+++GS+ + ++++ P WSP + FT S Sbjct: 109 AFTSDEDGGDNIWVMEADGSNPRAVTEETFRLLNSPAWSPDSQYLVARKHFTGSRSLGAG 168 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + G + L + N Q P +SP GR + FS+ D+ +Y Sbjct: 169 EVWMYHVAGGEGVKLTKRPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIY 228 Query: 420 SI----DLNGRNETLINTPAYASDPQ 441 I G E LI A P Sbjct: 229 KIKRYDTQTGDIEVLIEGTGGAIRPT 254 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN + + + DI ++ + K + + + P +S +GK + Sbjct: 60 SVSPNGKHIVF--DMLGDIYQIPMK----GGEAKVLAKGIAWQMQPVYSPDGKYIAFTSD 113 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 +D +I+ ++ + +T F + S ++SPDS +V F R G ++++ Sbjct: 114 EDGGDNIWVMEADGSNPRAVTEETFRLLNSPAWSPDSQYLVARKHFTGSRSLGAGEVWMY 173 Query: 332 QSNGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + ++++ +P +SP G I F++ + + I Sbjct: 174 HVAGGEGVKLTKRPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKIKRY 233 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G+ L + ++ S LY +DL +G E L Sbjct: 234 DTQTGDIEVLIEGTGGAIRPTPSPDGKKLAYIKRDG--FQSSLYMLDLRSGETEKL 287 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 19/202 (9%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALISVQ 277 SP+ +KV Y + L D + D R+ S L P++S +GK + + Sbjct: 374 SPDGKKVVYEAL--GKLWVKSLSDGKSDGKRTRLTKLDSELRELFPQWSRDGKSIVFTTW 431 Query: 278 KD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQ 327 D E + V L++ + LT + ++SPD S +V+ + G Sbjct: 432 DDLEQGSVRVVSLRNKRVKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPRSWSQETG 491 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 LY + + G + +I+ D + P + + D + F GE + + DG Q+R+ Sbjct: 492 LYRVDTKGKENIKITPDG----YQPQFGAESDRVYFMDH-GETPELASINLDGFQKRVHY 546 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 + SP G+ L F+ + Sbjct: 547 TSKHATEFRVSPDGKQLAFAER 568 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 103/296 (34%), Gaps = 42/296 (14%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + + G + L +P +SP+ + +A+ Sbjct: 53 EGTWMNVSVSPNGKHIVFDMLGDIYQIPMKGGEAKVLAKG-IAWQMQPVYSPDGKYIAFT 111 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D++ +++M+ ++ +P +S + + + + + A ++ Sbjct: 112 S-DEDGGDNIWVMEADGSNPRAVTEETFRLLNSPAWSPDSQYLVARKHFTGSRSLGAGEV 170 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 171 WMYHVAGGEGVKLTKRPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVKGIYKI 230 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + + + P SP G +A+ K G + ++ ++ + L Sbjct: 231 KRYDTQTGDIEVLI-EGTGGAIRPTPSPDGKKLAYIKRDGFQSSLYMLDLRSGETEKLYG 289 Query: 389 --DSNLQA--------P--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 D ++Q P +W+ ++F G K+ +D+ ++ I Sbjct: 290 KLDRDMQETWAIHGVYPTMSWTGDNEEIVFWA------GGKINKLDVESKSVKQIP 339 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 115/331 (34%), Gaps = 63/331 (19%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQK 225 D + + + + + G LT P+ + L EP +SP+ + Sbjct: 145 AWSPDSQYLVARKHFTGSRSLGAGEVWMYHVAGGEGVKLTKRPNEQKDLGEPAYSPDGRY 204 Query: 226 VA------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + Y+ + I ++ DT+ + + + P S +GK+ Sbjct: 205 IYFSQDATPGKTFHYSKDSVKGIYKIKRYDTQTGD-IEVLIEGTGGAIRPTPSPDGKKLA 263 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDR 322 + +Y +DL+S TE+L L ++ S++ D+ +IVF + Sbjct: 264 YIKRDGFQSSLYMLDLRSGETEKLYGKLDRDMQETWAIHGVYPTMSWTGDNEEIVFWA-- 321 Query: 323 EGKEQLYVMQSNGSDQKRI----------------SQDKEASYFD------PVWSPQGDL 360 ++ + K+I +QD + FD SP G Sbjct: 322 --GGKINKLDVESKSVKQIPFSIKTQLDVQPAVRFTQDLDKDKFDVKMLRMAQVSPDGKK 379 Query: 361 IAFTKFSGEKFAIGVMKK-----DGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGD 413 + + + V DG + RL DS L+ P WS G+S++F+ D + Sbjct: 380 VVYEALG----KLWVKSLSDGKSDGKRTRLTKLDSELRELFPQWSRDGKSIVFTTWDDLE 435 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 GS N R +TL P +P + Sbjct: 436 QGSVRVVSLRNKRVKTLTKEPGKYVEPTFSP 466 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 106/287 (36%), Gaps = 42/287 (14%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + + SL DG R + P++S + + + + T+DD + V Sbjct: 380 VVYEALGKLWVKSLSDGKSDGKRTRLTKLDSELRELFPQWSRDGKSIVFTTWDDLEQGSV 439 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD---------IYSVDLQ 290 ++ R ++ K + + P FS +G + K + +Y VD + Sbjct: 440 RVVSLR-NKRVKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPRSWSQETGLYRVDTK 498 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 ++T + + +S ++ F D +L + +G QKR+ + + Sbjct: 499 GKENIKITPDGY---QPQFGAESDRVYFM-DHGETPELASINLDGF-QKRVHYTSKHA-T 552 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------------TWS 398 + SP G +AF E+F + V E + + P +W+ Sbjct: 553 EFRVSPDGKQLAFA----ERFKVWVTPFAKHGETIEIGPKANNLPVTQLSVRAGESISWN 608 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNG----RNETLINTPAYASDPQ 441 L ++ G +LY ++++ +++T + A A +PQ Sbjct: 609 NDSDQLYWT------LGPELYQVEVDTAYAAKDKTADDKQAKAIEPQ 649 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G I F I + G + ++L + Q P +SP G+ Sbjct: 52 TEGTWMNVSVSPNGKHIVFDMLGD----IYQIPMKGGEAKVLAKGIAWQMQPVYSPDGKY 107 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G ++ ++ +G N + + + P W Sbjct: 108 IAFTSDEDG--GDNIWVMEADGSNPRAVTEETFRLLNSPAWSP 148 >gi|114321544|ref|YP_743227.1| WD40 domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227938|gb|ABI57737.1| WD40 domain protein beta Propeller [Alkalilimnicola ehrlichii MLHE-1] Length = 352 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 9/205 (4%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D A R+ + + PR+S + +R ++D DIY +D + +RLT++ ++ Sbjct: 53 DGAIVRLTDPAHSDMDPRWSPDRQRIAFVSRRDGNGDIYLMDADGSNQQRLTHSERMDFM 112 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + P + F S R ++++ + + +S + S WSP G +A Sbjct: 113 PQWHPSGDYLAFTSSRVSPRGVFLLDLATGEARLLS-EAVRSPEALRWSPDGGQLAVIAR 171 Query: 367 SG--EKFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 G AI V+ + +LV N+Q+ W PSG L ++ D +LY Sbjct: 172 PGGEGGNAIMVIDLEDDGHSILVPNDRHAGNVQSLAWHPSGDYLAYTASTDNRREVQLYV 231 Query: 421 IDL-NGRNETLINTPAYAS-DPQWV 443 + + G +E + + P P W Sbjct: 232 LHVQEGHSEQVASAPGNVRGFPVWS 256 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 6/178 (3%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 L ++ A IYS L A RLT+ ++ +SPD +I F S R+G +Y+M Sbjct: 34 VLFVSNQEGAQSIYSASLNDGAIVRLTDPAHSDMDPRWSPDRQRIAFVSRRDGNGDIYLM 93 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-S 390 ++GS+Q+R++ E F P W P GD +AFT + ++ + RLL E Sbjct: 94 DADGSNQQRLTH-SERMDFMPQWHPSGDYLAFTSSRVSPRGVFLLDLATGEARLLSEAVR 152 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL--NGRNETLINT--PAYASDPQWVG 444 + +A WSP G L + G+ G+ + IDL +G + + N W Sbjct: 153 SPEALRWSPDGGQLAVIARPGGEGGNAIMVIDLEDDGHSILVPNDRHAGNVQSLAWHP 210 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 107/259 (41%), Gaps = 17/259 (6%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DGA +R P+ +PR+SP++Q++A+ + D + +YLMD +R+ + Sbjct: 53 DGAIVRLTDPAHS--DMDPRWSPDRQRIAFVSRRDGNG-DIYLMDAD-GSNQQRLTHSER 108 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 M P++ +G + + ++ +DL + L+ + + +SPD Q+ Sbjct: 109 MDFMPQWHPSGDYLAFTSSRVSPRGVFLLDLATGEARLLSEAVRSPEALRWSPDGGQLAV 168 Query: 319 ESDRE--GKEQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 + G + V+ + + + W P GD +A+T + + + Sbjct: 169 IARPGGEGGNAIMVIDLEDDGHSILVPNDRHAGNVQSLAWHPSGDYLAYTASTDNRREVQ 228 Query: 375 VMKK---DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRK---KDGDTGSKLYSIDL--NG 425 + +G E++ N++ P WS G L+++ +T + +Y+ +G Sbjct: 229 LYVLHVQEGHSEQVASAPGNVRGFPVWSTDGDWLVYASTATPAPEETKTNIYASRFPDDG 288 Query: 426 RNETLINTPAYASDPQWVG 444 R T+ + P W+ Sbjct: 289 RPVTVATLDGQLAQPVWLP 307 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 121/301 (40%), Gaps = 25/301 (8%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ++D + + RI FVS +G + +MD DG+N + LT S +++ F Sbjct: 58 RLTDPAHSDMDPRWSPDRQRIAFVSRRDGNG----DIYLMDADGSNQQRLTHS-ERMDFM 112 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P++ P+ +A+ + V+L+D A + + A R+S +G + + Sbjct: 113 PQWHPSGDYLAFTSSRV-SPRGVFLLDLATGEA-RLLSEAVRSPEALRWSPDGGQLAVIA 170 Query: 277 QKD--EAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDREGKE--QLY 329 + I +DL+ + L S ++ P + + + + + QLY Sbjct: 171 RPGGEGGNAIMVIDLEDDGHSILVPNDRHAGNVQSLAWHPSGDYLAYTASTDNRREVQLY 230 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-----EKFAIGVMKK--DGSQ 382 V+ ++++ PVWS GD + + + K I + DG Sbjct: 231 VLHVQEGHSEQVASAPGNVRGFPVWSTDGDWLVYASTATPAPEETKTNIYASRFPDDGRP 290 Query: 383 ERLLVEDSNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDP 440 + D L P W P G ++F +K G ++L+ ++G +L+ PAY P Sbjct: 291 VTVATLDGQLAQPVWLPNDGGEVVFVSQKGG--AAELFRGRVDGAEPSLVFAQPAYMHSP 348 Query: 441 Q 441 + Sbjct: 349 R 349 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 93/288 (32%), Gaps = 34/288 (11%) Query: 63 GKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF-QDWNSLGAQVLVTGRVIKEGK 121 +++ V +D + L+ D Q+ F W+ G L + Sbjct: 76 QRIAFVSRRD--GNGDIYLMDADGSNQQRLTHSERMDFMPQWHPSG-DYLAFTSSRVSPR 132 Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 L D+ + + + SP + R ++ ++ Sbjct: 133 GVF-----LLDLATGEARLLSEAVRSPEALRWSPD-----------------GGQLAVIA 170 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA-TYDDEDILRVY 240 G + ++ DG +I + + P+ +AY + D+ +++Y Sbjct: 171 RPGGEGGNAIMVIDLEDDGHSILVPNDRHAGNVQSLAWHPSGDYLAYTASTDNRREVQLY 230 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL------QSNAT 294 ++ + + + ++ P +S++G + + A + ++ Sbjct: 231 VLHVQEGHSEQVASAPGNVRGFPVWSTDGDWLVYASTATPAPEETKTNIYASRFPDDGRP 290 Query: 295 ERLTNTLFINISASYSP-DSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 + + P D ++VF S + G +L+ + +G++ + Sbjct: 291 VTVATLDGQLAQPVWLPNDGGEVVFVSQKGGAAELFRGRVDGAEPSLV 338 >gi|225011742|ref|ZP_03702180.1| WD40 domain protein beta Propeller [Flavobacteria bacterium MS024-2A] gi|225004245|gb|EEG42217.1| WD40 domain protein beta Propeller [Flavobacteria bacterium MS024-2A] Length = 304 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 86/209 (41%), Gaps = 20/209 (9%) Query: 219 FSPNQQKVAYAT---YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 FS + + V ++ D +Y + + S S +GK + Sbjct: 95 FSFDGKTVFISSGKKEDKSHTSYIYKVAAEGGVPVQITPKTPSYWHG--VSPDGKDIVYC 152 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +++ D+Y +++ RLT+T ++ YSPD I F S R + Q++ M+ +G Sbjct: 153 AERNGNYDVYKMNVDGGEEIRLTSTEGLDDGPEYSPDGMYIYFNSFRTKQMQIWRMKPDG 212 Query: 336 SDQKRISQDKEASYFDPVWSPQGD---LIAFTKFS------GEKFAIGVMKKDGSQERLL 386 + ++++ D +++F +P LI++ + G + ++ + + + L Sbjct: 213 TQAEQMTFDNYSNWFA-HIAPNNSQAVLISYIENQEDKHPFGRAVKLRLIDLETKKIKDL 271 Query: 387 VE-----DSNLQAPTWSPSGRSLIFSRKK 410 + + P+WSP G + R + Sbjct: 272 TDVFYGGQGTINVPSWSPDGLEFAYVRYE 300 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 17/221 (7%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNS-LCVMDRDGANIRYLTPSRDQILFEPR 218 D I + F+ + +F+S S + + +G +TP + Sbjct: 84 DQITKCNNDHGFSFDGKTVFISSGKKEDKSHTSYIYKVAAEGGVPVQITP--KTPSYWHG 141 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + + Y + + VY M+ R+ + + P +S +G + + Sbjct: 142 VSPDGKDIVYCAERNGN-YDVYKMNVDGGEEI-RLTSTEGLDDGPEYSPDGMYIYFNSFR 199 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE---------QLY 329 + M I+ + E++T + N A +P++SQ V S E +E +L Sbjct: 200 TKQMQIWRMKPDGTQAEQMTFDNYSNWFAHIAPNNSQAVLISYIENQEDKHPFGRAVKLR 259 Query: 330 VMQSNGSDQKRIS---QDKEASYFDPVWSPQGDLIAFTKFS 367 ++ K ++ + + P WSP G A+ ++ Sbjct: 260 LIDLETKKIKDLTDVFYGGQGTINVPSWSPDGLEFAYVRYE 300 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 24/213 (11%) Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 I +YL + K I + AP + N K LI + + + L+ Sbjct: 25 ISNLYLYNIETG-LSKLILKEKRHFEAPNWIVNEKALLI----NSNGKLEKISLEGERLG 79 Query: 295 ----ERLTNTLFINISASYSPDSSQIVFES-----DREGKEQLYVMQSNGSDQKRISQDK 345 +++T N +S D VF S D+ +Y + + G +I+ Sbjct: 80 ILDTDQITK---CNNDHGFSFDGKT-VFISSGKKEDKSHTSYIYKVAAEGGVPVQITPKT 135 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSL 404 + + SP G I + + + M DG +E L P +SP G + Sbjct: 136 PSYWHG--VSPDGKDIVYCAERNGNYDVYKMNVDGGEEIRLTSTEGLDDGPEYSPDGMYI 193 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 F+ + +++ + +G + Y+ Sbjct: 194 YFNSFRTKQM--QIWRMKPDGTQAEQMTFDNYS 224 >gi|254483262|ref|ZP_05096494.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium HTCC2148] gi|214036485|gb|EEB77160.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium HTCC2148] Length = 342 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 17/228 (7%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G+ + S + P F+PN + + +++ + ++ + +I + S Sbjct: 112 GSPAKSPISSDAGMNLTPAFTPNGRFLIFSSDRSGESQSLWRKRSDGAGGITQITSSNSF 171 Query: 260 ILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P +S+G+ + + ++A I+S+++ +LT S S SPD +IV Sbjct: 172 DWQPAIASDGETIIFQSHRKNNQAASIWSINMNGGLLTQLTEGR----SPSISPDGRRIV 227 Query: 318 FES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----FSGEKF 371 F GK+Q++ MQ +GS ++S A+ DP W P G I F G+ F Sbjct: 228 FVRPDASTGKDQVWSMQVDGSGLTQLSS-GNANDVDPSWHPNGRYIVFASDAMVVQGDVF 286 Query: 372 ---AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTG 415 I +M+ DG+Q L E+ S+ AP + GR+++F + G Sbjct: 287 ADYNIWIMRADGTQREQLTENFSHDDAPVFDRRGRTIVFRSNRGGHWN 334 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 21/246 (8%) Query: 201 ANIRYLTPS--RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 N++ LT + R P SPNQ + Y + +Y I + Sbjct: 67 TNLKQLTNNTERSNQYNRPALSPNQDAMVYVEFAGGKS-SIYRQSLGSPAKS-PISSDAG 124 Query: 259 MILAPRFSSNGKRALISVQKDEAMD-IYSVDLQS-NATERLTNTLFINISASYSPDSSQI 316 M L P F+ NG+ + S + ++ ++T++ + + + D I Sbjct: 125 MNLTPAFTPNGRFLIFSSDRSGESQSLWRKRSDGAGGITQITSSNSFDWQPAIASDGETI 184 Query: 317 VFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFA 372 +F+S R+ + ++ + NG ++++ + P SP G I F + S K Sbjct: 185 IFQSHRKNNQAASIWSINMNGGLLTQLTEGR-----SPSISPDGRRIVFVRPDASTGKDQ 239 Query: 373 IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRK---KDGD--TGSKLYSIDLNGR 426 + M+ DGS L +N P+W P+GR ++F+ GD ++ + +G Sbjct: 240 VWSMQVDGSGLTQLSSGNANDVDPSWHPNGRYIVFASDAMVVQGDVFADYNIWIMRADGT 299 Query: 427 NETLIN 432 + Sbjct: 300 QREQLT 305 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 98/273 (35%), Gaps = 27/273 (9%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 + + VEF K I ++ SPA IS D ++T F Sbjct: 86 ALSPNQDAMVYVEF-----AGGKSSIYRQSLGSPAKSP-----ISSDAGMNLTP---AFT 132 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 F+ S SL DGA S + ++P + + + + + ++ Sbjct: 133 PNGRFLIFSSDRSGESQSLWRKRSDGAGGITQITSSNSFDWQPAIASDGETIIFQSHRKN 192 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV--QKDEAMDIYSVDLQSN 292 + ++ R +P S +G+R + ++S+ + + Sbjct: 193 NQAASIWSINMNGGLLTQLTEGR----SPSISPDGRRIVFVRPDASTGKDQVWSMQVDGS 248 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDRE-------GKEQLYVMQSNGSDQKRISQDK 345 +L++ ++ S+ P+ IVF SD +++M+++G+ +++++++ Sbjct: 249 GLTQLSSGNANDVDPSWHPNGRYIVFASDAMVVQGDVFADYNIWIMRADGTQREQLTENF 308 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 PV+ +G I F G + + Sbjct: 309 SHDD-APVFDRRGRTIVFRSNRGGHWNLFSFNP 340 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 9/187 (4%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S N + IY L S A +++ +N++ +++P+ ++F SDR Sbjct: 85 PALSPNQDAMVYVEFAGGKSSIYRQSLGSPAKSPISSDAGMNLTPAFTPNGRFLIFSSDR 144 Query: 323 EGKEQ-LYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKK 378 G+ Q L+ +S+G +I+ + + P + G+ I F A I + Sbjct: 145 SGESQSLWRKRSDGAGGITQITS-SNSFDWQPAIASDGETIIFQSHRKNNQAASIWSINM 203 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYA 437 +G L E +P+ SP GR ++F R +++S+ ++G T +++ A Sbjct: 204 NGGLLTQLTEGR---SPSISPDGRRIVFVRPDASTGKDQVWSMQVDGSGLTQLSSGNAND 260 Query: 438 SDPQWVG 444 DP W Sbjct: 261 VDPSWHP 267 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY---- 231 RI+FV +G K+ + M DG+ + L+ +P + PN + + +A+ Sbjct: 225 RIVFVRPDASTG--KDQVWSMQVDGSGLTQLSSGNAN-DVDPSWHPNGRYIVFASDAMVV 281 Query: 232 --DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 D +++M + + NF S AP F G+ + + +++S + Sbjct: 282 QGDVFADYNIWIMRADGTQREQLTENF-SHDDAPVFDRRGRTIVFRSNRGGHWNLFSFNP 340 Query: 290 Q 290 Q Sbjct: 341 Q 341 >gi|294138815|ref|YP_003554793.1| amidohydrolase family protein [Shewanella violacea DSS12] gi|293325284|dbj|BAJ00015.1| amidohydrolase family protein [Shewanella violacea DSS12] Length = 1079 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 25/211 (11%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +I + S NGK + D DIY + +Q + L + + +YSP Sbjct: 48 KIDVSEGTWMNISVSPNGKTIVF----DMLGDIYQIPMQGGEAKVLAKGIAWQMQPTYSP 103 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KF 366 D I F SD G + +++M ++GS+ + ++ + P WSP + +T Sbjct: 104 DGKYIAFTSDENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKHYTGSR 163 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT 414 S + + G + L E N Q P +SP GR + FS+ ++ Sbjct: 164 SLGAGEVWLYHIAGGEGIKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKNS 223 Query: 415 GSKLYSI----DLNGRNETLINTPAYASDPQ 441 +Y I G E L+ A P Sbjct: 224 VKGIYKIKRYDTETGDIEVLVQGTGGAIRPT 254 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 97/251 (38%), Gaps = 31/251 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + SPN + + + DI ++ + K + + + Sbjct: 45 EQVKIDVSEGTWMNISVSPNGKTIVF--DMLGDIYQIPMQ----GGEAKVLAKGIAWQMQ 98 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV---- 317 P +S +GK + ++ +I+ +D + +T+ F + S ++SPDS +V Sbjct: 99 PTYSPDGKYIAFTSDENGGDNIWIMDADGSNPRAVTDETFRLLNSPAWSPDSQYLVARKH 158 Query: 318 FESDRE-GKEQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFT---------- 364 + R G ++++ G + +++ +++ +P +SP G I F+ Sbjct: 159 YTGSRSLGAGEVWLYHIAGGEGIKLTERPNEQKDLGEPAYSPDGRYIYFSQDATPGKTFH 218 Query: 365 ---KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + I + +LV+ PT SP G L + ++ S LY Sbjct: 219 YSKNSVKGIYKIKRYDTETGDIEVLVQGTGGAIRPTPSPDGTKLAYIKRDG--FQSSLYL 276 Query: 421 IDL-NGRNETL 430 +DL +G+ E L Sbjct: 277 LDLKSGKKEKL 287 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 114/327 (34%), Gaps = 42/327 (12%) Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 + + A W+ A T + I +G + + + + + + + + Sbjct: 22 MASESTSDKAAKWQVNAPTNAPFEQVKIDVSEGTWMNISVSPNGKTIVFDMLGDIYQIPM 81 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 G + L +P +SP+ + +A+ + D+ +++MD Sbjct: 82 QGGEAKVLAKG-IAWQMQPTYSPDGKYIAFTS-DENGGDNIWIMDADGSNPRAVTDETFR 139 Query: 259 MILAPRFSSNGKRAL----ISVQKD-EAMDIYSVDLQSNATERLTNTLFIN---ISASYS 310 ++ +P +S + + + + + A +++ + +LT +YS Sbjct: 140 LLNSPAWSPDSQYLVARKHYTGSRSLGAGEVWLYHIAGGEGIKLTERPNEQKDLGEPAYS 199 Query: 311 PDSSQIVFESDRE-------------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 PD I F D G ++ + D + + Q + P SP Sbjct: 200 PDGRYIYFSQDATPGKTFHYSKNSVKGIYKIKRYDTETGDIEVLVQGTGGAIR-PTPSPD 258 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQA--------P--TWSPSGRSLI 405 G +A+ K G + ++ ++ ++ L D ++Q P +W+ + ++ Sbjct: 259 GTKLAYIKRDGFQSSLYLLDLKSGKKEKLYGKLDRDMQETWAIHGVYPTMSWTSDNQEIV 318 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLIN 432 F G K+ ID+ ++ I Sbjct: 319 FWA------GGKINKIDVESKSVKQIP 339 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 17/208 (8%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +L + SP+ +KV Y I + + R K R L P++S + + Sbjct: 366 NMLRMAQVSPDGKKVVYEALGKLWIKSLSNKSDKHSRLTKLDSELR--ELYPQWSRDSRS 423 Query: 272 ALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG------ 324 + + D+ + V +++ ++ LT + ++SPD S +V+ + G Sbjct: 424 VVFTTWDDQQQGTVKVVSVRNKRSKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPKT 483 Query: 325 ---KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 LY + G RI+ D + P + + + F GE + DG Sbjct: 484 WSQNTGLYKVDIQGKQNTRITPDG----YQPQFGADSERVYFMDQ-GETPEFASINLDGF 538 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRK 409 Q+R+ SP G+ L F+ + Sbjct: 539 QKRVHYTSKLGTEFRISPDGKQLAFAER 566 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 75/401 (18%), Positives = 143/401 (35%), Gaps = 71/401 (17%) Query: 99 RFQDWNSLGAQVLV-----TGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRK 153 W S +Q LV TG G E L+ + + G K P + Sbjct: 142 NSPAW-SPDSQYLVARKHYTGS-RSLGAG----EVWLYHIAGGE---GIKLTERPNEQKD 192 Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 + + I + + S++ V GI K + D + +I L Sbjct: 193 LGEPAYSPDGRYIYFSQDATPGKTFHYSKNSVKGIYK--IKRYDTETGDIEVLVQGTGGA 250 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAP 263 + P SP+ K+AY D +YL+D + + K G + Sbjct: 251 I-RPTPSPDGTKLAYIKRD-GFQSSLYLLDLKSGKKEKLYGKLDRDMQETWAIHGVYPTM 308 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASY------------ 309 ++S+ + + I +D++S + +++ ++ + + Sbjct: 309 SWTSDNQEIVFWA----GGKINKIDVESKSVKQIPFSVKTELAVQPAVRFKQDLDKDVFD 364 Query: 310 ---------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGD 359 SPD ++V+E+ GK + + + R+++ D E P WS Sbjct: 365 VNMLRMAQVSPDGKKVVYEA--LGKLWIKSLSNKSDKHSRLTKLDSELRELYPQWSRDSR 422 Query: 360 LIAFTKFSGEKFA-IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG----- 412 + FT + ++ + V+ + + L E PT+SP G +++ + K G Sbjct: 423 SVVFTTWDDQQQGTVKVVSVRNKRSKTLTKEPGKYVEPTFSPDGSFVVYRKAKGGYITPK 482 Query: 413 --DTGSKLYSIDLNGRNETLIN----TPAYASDPQWVGFMD 447 + LY +D+ G+ T I P + +D + V FMD Sbjct: 483 TWSQNTGLYKVDIQGKQNTRITPDGYQPQFGADSERVYFMD 523 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 115/338 (34%), Gaps = 57/338 (16%) Query: 158 ISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQI 213 ++D+ ++ + +S+ L + + + + G LT P+ + Sbjct: 133 VTDETFRLLNSPAWSPDSQYLVARKHYTGSRSLGAGEVWLYHIAGGEGIKLTERPNEQKD 192 Query: 214 LFEPRFSPNQQKVA------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 L EP +SP+ + + Y+ + I ++ DT + + + Sbjct: 193 LGEPAYSPDGRYIYFSQDATPGKTFHYSKNSVKGIYKIKRYDTETGD-IEVLVQGTGGAI 251 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------ASYS 310 P S +G + + +Y +DL+S E+L L ++ S++ Sbjct: 252 RPTPSPDGTKLAYIKRDGFQSSLYLLDLKSGKKEKLYGKLDRDMQETWAIHGVYPTMSWT 311 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP------------------ 352 D+ +IVF + ++ + K+I + Sbjct: 312 SDNQEIVFWA----GGKINKIDVESKSVKQIPFSVKTELAVQPAVRFKQDLDKDVFDVNM 367 Query: 353 ----VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIF 406 SP G + + G+ + + K RL DS L+ P WS RS++F Sbjct: 368 LRMAQVSPDGKKVVYEAL-GKLWIKSLSNKSDKHSRLTKLDSELRELYPQWSRDSRSVVF 426 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + D G+ N R++TL P +P + Sbjct: 427 TTWDDQQQGTVKVVSVRNKRSKTLTKEPGKYVEPTFSP 464 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 10/129 (7%) Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 SD+ K Q+ + +Q +I E ++ + SP G I F I + Sbjct: 27 TSDKAAKWQVNAPTNAPFEQVKI-DVSEGTWMNISVSPNGKTIVFDMLGD----IYQIPM 81 Query: 379 DGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY- 436 G + ++L + Q PT+SP G+ + F+ ++G G ++ +D +G N + + Sbjct: 82 QGGEAKVLAKGIAWQMQPTYSPDGKYIAFTSDENG--GDNIWIMDADGSNPRAVTDETFR 139 Query: 437 -ASDPQWVG 444 + P W Sbjct: 140 LLNSPAWSP 148 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 91/244 (37%), Gaps = 41/244 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++ + Q++ + + I ++ + + + P + ++ A RF Sbjct: 309 SWTSDNQEIVF--WAGGKINKIDVESKSVKQIPFSVKTELAVQPAVRFKQDLDKDVFDVN 366 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 S +GK+ + + + I S+ +S+ RLT ++ + +S DS + Sbjct: 367 MLRMAQVSPDGKKVVY--EALGKLWIKSLSNKSDKHSRLTKLDSELRELYPQWSRDSRSV 424 Query: 317 VFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------ 369 VF + D + + + V+ K ++++ Y +P +SP G + + K G Sbjct: 425 VFTTWDDQQQGTVKVVSVRNKRSKTLTKE-PGKYVEPTFSPDGSFVVYRKAKGGYITPKT 483 Query: 370 ---KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + G Q + D P + + F D + SI+L+G Sbjct: 484 WSQNTGLYKVDIQGKQNTRITPDGYQ--PQFGADSERVYFM---DQGETPEFASINLDGF 538 Query: 427 NETL 430 + + Sbjct: 539 QKRV 542 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 68/258 (26%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + + ++ V+ + LT + + EP FSP+ V Y Sbjct: 424 VVFTTWDDQQQGTVKVVSVRNKRSKTLTKEPGKYV-EPTFSPDGSFVVY----------- 471 Query: 240 YLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + P +S + +Y VD+Q R+T Sbjct: 472 --------------RKAKGGYITPKTWS-------------QNTGLYKVDIQGKQNTRIT 504 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + + DS ++ F D+ + + +G ++ K + F SP G Sbjct: 505 PDGY---QPQFGADSERVYFM-DQGETPEFASINLDGFQKRVHYTSKLGTEF--RISPDG 558 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP------------TWSPSGRSLIF 406 +AF E+F + V E + + P +W+ + L + Sbjct: 559 KQLAFA----ERFKVWVTPFAKHGETIEIGPKASNLPVSQLSVRAGESISWNGNSDQLYW 614 Query: 407 SRKKDGDTGSKLYSIDLN 424 + G +LY + ++ Sbjct: 615 T------LGPELYQMSVD 626 >gi|302866980|ref|YP_003835617.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315506582|ref|YP_004085469.1| peptidase s9b dipeptidylpeptidase iv domain protein [Micromonospora sp. L5] gi|302569839|gb|ADL46041.1| peptidase S9B dipeptidylpeptidase IV domain protein [Micromonospora aurantiaca ATCC 27029] gi|315413201|gb|ADU11318.1| peptidase S9B dipeptidylpeptidase IV domain protein [Micromonospora sp. L5] Length = 590 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 97/248 (39%), Gaps = 9/248 (3%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + + ++ P +SP+ + VAY R +L+ + AP+R+ Sbjct: 104 SDGQTRQLTSAGHEE--EYPSWSPDGRTVAYV--GGPWGRRHFLVVSADGGAPRRVTTEP 159 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 A ++ +G+ + A ++ +D ++ +T+ + + P + Sbjct: 160 GRAGACSWAPDGRWLVCHSYDTGAGAVWLLDSRTGEAIPVTDGSSWDYKPTICPTRPAVA 219 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 F EG+ ++V + + + A P W+ G+ + F + E I V Sbjct: 220 FSRSDEGRSVIWVQRLADGVGRPLVVTG-ADDRWPTWTRDGNHLFFHRLVDEGAGIAVWD 278 Query: 378 KDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + R LV + + +++P GR +++ + DG + ++ +DL + Sbjct: 279 RRTKAVRELVPAEEKPRYASFAPDGRRIVYGTEADGRSALRI--LDLATGVSQPVP-AGE 335 Query: 437 ASDPQWVG 444 A+ P W Sbjct: 336 AAFPSWSP 343 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 87/226 (38%), Gaps = 5/226 (2%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + A+ + ++ D R + ++ + ++S + ++ + Sbjct: 34 AISPDGTRFV-ASSKRNGSVNLWFFDLRTGK-WQQGTWGTGDDIEAQWSPDNEQLAFTSS 91 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + I+ L T +LT+ S+SPD + + G+ V+ ++G Sbjct: 92 RGGHKAIWLYRLSDGQTRQLTSAGHEEEYPSWSPDGRTVAYVGGPWGRRHFLVVSADGGA 151 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PT 396 +R++ + W+P G + + A+ ++ + + + S+ PT Sbjct: 152 PRRVTTE-PGRAGACSWAPDGRWLVCHSYDTGAGAVWLLDSRTGEAIPVTDGSSWDYKPT 210 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 P+ ++ FSR +G + + + +G L+ T A P W Sbjct: 211 ICPTRPAVAFSRSDEGRSVIWVQRL-ADGVGRPLVVTGADDRWPTW 255 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 97/261 (37%), Gaps = 14/261 (5%) Query: 185 VSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 S ++ + V DG + D P ++ + + + DE + + D Sbjct: 222 RSDEGRSVIWVQRLADGVGRPLVVTGAD--DRWPTWTRDGNHLFFHRLVDEGA-GIAVWD 278 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + + A F+ +G+R + + D + +DL + ++ + Sbjct: 279 RRTKAVRELVPAEEKPRYA-SFAPDGRRIVYGTEADGRSALRILDLATGVSQPVPAGEA- 336 Query: 304 NISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKE---ASYFDPVWSPQG 358 S+SPD I D + ++ + G + + D++ + ++P G Sbjct: 337 -AFPSWSPDGRTIACALRPDPTSRWEIATVDVAGGQPRVWTADRDDLRGLHAPVSFAPDG 395 Query: 359 DLIAFTK-FSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGS 416 + F + + V+ D + L EDS +AP ++P GR ++F + G+ Sbjct: 396 RRLVFRSETEPFEANLLVLDLDSGRITNLTEDSWWDEAPAFTPDGRGVVFMSTRGGNWTW 455 Query: 417 KLYSIDLNGRNETLINTPAYA 437 Y IDL+ + P Y Sbjct: 456 GFYRIDLDSGELLTLAGPDYV 476 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 8/202 (3%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG----NFRSMILAPRFSSNGKR 271 P +SP+ + +A A D P+ + R + F+ +G+R Sbjct: 338 FPSWSPDGRTIACALRPDPTSRWEIATVDVAGGQPRVWTADRDDLRGLHAPVSFAPDGRR 397 Query: 272 ALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--EQL 328 + S + ++ +DL S LT + + + +++PD +VF S R G Sbjct: 398 LVFRSETEPFEANLLVLDLDSGRITNLTEDSWWDEAPAFTPDGRGVVFMSTRGGNWTWGF 457 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + + + ++ +P + G I T + + + DG+ + Sbjct: 458 YRIDLDSGELLTLAGPDYVERNNPRSTADGR-ILSTMVASKVEELYEQLPDGTGRVVTEA 516 Query: 389 DSNLQAPTWSPSGRSLIFSRKK 410 ++ P S G ++F+R + Sbjct: 517 GPGVRYPVPSADGEQVLFTRTR 538 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 3/152 (1%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 L + + SPD ++ V S R G L+ ++ + + Sbjct: 20 LRLLAADPNGSGDGAISPDGTRFVASSKRNGSVNLWFFDLRTGKWQQGTWGT-GDDIEAQ 78 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 WSP + +AFT G AI + + Q R L + + P+WSP GR++ + G Sbjct: 79 WSPDNEQLAFTSSRGGHKAIWLYRLSDGQTRQLTSAGHEEEYPSWSPDGRTVAYVGGPWG 138 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + S D G + P A W Sbjct: 139 RRHFLVVSADG-GAPRRVTTEPGRAGACSWAP 169 >gi|320107875|ref|YP_004183465.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] gi|319926396|gb|ADV83471.1| WD40-like beta Propeller containing protein [Terriglobus saanensis SP1PR4] Length = 729 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 99/275 (36%), Gaps = 18/275 (6%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI FV + M DG +++ LT + ++ + + +A+ Sbjct: 346 RIAFVRYISHGAG---EIFTMAADGTDLKQLTTDHRNVRGV-DWASDGWHLIFASNRRGS 401 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN--- 292 + R + + + + P S G DE +I+ V +Q+ Sbjct: 402 YELREI--DRNGGESQPLPSDTASASEPAISRIGNWMAFVES-DENWNIWRVPIQNGHIG 458 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + +R + N S S+SPD I F SDR G +++ +GS ++++ Sbjct: 459 SPKRFLASQGHNHSPSFSPDGRTIAFVSDRSGTPEIWFANEDGSSLRQMTHFGGPWLGTI 518 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKD 411 WSP + F I M G + L E ++ P WS GRS+ F + Sbjct: 519 RWSPDNKAVVFDARPNGNSEIFTMSASGGKPTLFEHEQFEVRRPGWSRDGRSVYFDTTRA 578 Query: 412 GDTGSKLYSIDLNGRNETLIN-----TPAYASDPQ 441 G +++ L I P+ + D Q Sbjct: 579 G--MPQIWKRTLATGATRPIAPKDTLYPSESMDGQ 611 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 124/297 (41%), Gaps = 31/297 (10%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI--LFEPRFSPNQQKVAYATYDDED 235 FV + ++G SL + A+ + P ++I F P +P+ +VAY + D Sbjct: 148 AFVVLTALAGSSLISLHRSVQAKADSFDIVPFSNEIGQQFSPSIAPDGTRVAYVWDGNAD 207 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y+ D + R+ + + + P +S +G+ + +++ A Sbjct: 208 NYDIYIKDLKTSGVV-RLTDDKQPDIHPAWSPDGREVAFLRRSPSGTEVFVKSAGGGAEH 266 Query: 296 RL-----TNTLFIN-------ISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKR 340 + T+ L+ + S +++PD Q++ D GK+ L ++ + +K Sbjct: 267 PVGAIRDTSGLWASENPFSGCQSPTWTPDGRQLLLT-DGLGKDYGAGLVLLSVDSGTEKP 325 Query: 341 ISQDKEAS-YFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLVED-SNLQAPTW 397 ++ + P +S G IAF ++ S I M DG+ + L D N++ W Sbjct: 326 LTSPRPQDEDCYPRFSQDGKRIAFVRYISHGAGEIFTMAADGTDLKQLTTDHRNVRGVDW 385 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQ------WVGFMD 447 + G LIF+ + G +L ID NG + + A AS+P W+ F++ Sbjct: 386 ASDGWHLIFASNRRGS--YELREIDRNGGESQPLPSDTASASEPAISRIGNWMAFVE 440 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 85/245 (34%), Gaps = 20/245 (8%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRA 272 P FSP+ + +A+ + + +++ +F L R+S + K Sbjct: 470 NHSPSFSPDGRTIAFVSDRSGTPE--IWFANEDGSSLRQMTHFGGPWLGTIRWSPDNKAV 527 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + + +I+++ + F +S D + F++ R G Q++ Sbjct: 528 VFDARPNGNSEIFTMSASGGKPTLFEHEQFEVRRPGWSRDGRSVYFDTTRAGMPQIWKRT 587 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLL--VED 389 + I+ P S G + F +G + ++ + DG+ + + V Sbjct: 588 LATGATRPIAPK---DTLYPSESMDGQTLFFFSGNGRGEHSLWSERTDGNDLKQIPGVHP 644 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS-----IDLNGRNETLIN--TPAYA--SDP 440 + S G + F+ YS I G+ ++ TP+ D Sbjct: 645 NPDLDWAVSKDG--IYFAMGDAVSARLNFYSFRDGRITSAGKLTQALSLGTPSLVVSPDG 702 Query: 441 QWVGF 445 +W+ + Sbjct: 703 KWLLY 707 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 55/246 (22%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I FVS+ + + + DG+++R +T L R+SP+ + V + + + Sbjct: 482 IAFVSDRSGTP----EIWFANEDGSSLRQMTHFGGPWLGTIRWSPDNKAVVFDARPNGNS 537 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + + P + + + P +S +G+ + I+ L + AT Sbjct: 538 EIFTM--SASGGKPTLFEHEQFEVRRPGWSRDGRSVYFDTTRAGMPQIWKRTLATGATRP 595 Query: 297 LTNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRI-------------- 341 + + S S D + F S G+ L+ +++G+D K+I Sbjct: 596 I--APKDTLYPSESMDGQTLFFFSGNGRGEHSLWSERTDGNDLKQIPGVHPNPDLDWAVS 653 Query: 342 --------------------------------SQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +Q V SP G + + Sbjct: 654 KDGIYFAMGDAVSARLNFYSFRDGRITSAGKLTQALSLGTPSLVVSPDGKWLLYACIDST 713 Query: 370 KFAIGV 375 K I + Sbjct: 714 KSDIKI 719 >gi|254442939|ref|ZP_05056415.1| hypothetical protein VDG1235_1173 [Verrucomicrobiae bacterium DG1235] gi|198257247|gb|EDY81555.1| hypothetical protein VDG1235_1173 [Verrucomicrobiae bacterium DG1235] Length = 469 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 91/215 (42%), Gaps = 18/215 (8%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 R+ + + +++ T + + +Y + R P+++ + +S + Sbjct: 253 RNNNDHVLNWGADMIAISHHTEEHDGKSIIYKLPVR-GGIPEQLT-LQGPSFLHGWSPDN 310 Query: 270 KRALISVQKDEAMDIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 K + + ++ +I+ E +LT++ ++ + YSPD I F S R G Q+ Sbjct: 311 KYVIYTAERGGKWNIWRTTTDGKGEEAQLTDSPGLSDGSEYSPDGKYIYFNSTRSGLMQI 370 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIGVMKK 378 + M+++GS+ ++++ D+ ++F P SP G + F + + + M Sbjct: 371 WRMKADGSEPEQVTDDQYNNWF-PHLSPDGKTLVFLSYGQDVEPANHPYYKHVFLRTMPV 429 Query: 379 DGSQERLLV----EDSNLQAPTWSPSGRSLIFSRK 409 G R++ + P+WSP GR + F Sbjct: 430 SGGAPRIVAYLYGGQGTINVPSWSPDGRKVAFVSH 464 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 97/260 (37%), Gaps = 27/260 (10%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR---SMI 260 R + S + + P ++P+ + + Y + R+Y + + F + Sbjct: 203 REIVYSTKEGIEAPNWTPDGKTLIYNS-----GGRLYRFGLASGVSAEMDTGFGIRNNND 257 Query: 261 LAPRFSSNGKRALISV---QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + ++ IS + D IY + ++ E+LT + +SPD+ ++ Sbjct: 258 HVLNWGAD--MIAISHHTEEHDGKSIIYKLPVRGGIPEQLT-LQGPSFLHGWSPDNKYVI 314 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 + ++R GK ++ ++G ++ D +SP G I F I MK Sbjct: 315 YTAERGGKWNIWRTTTDGKGEEAQLTDSPGLSDGSEYSPDGKYIYFNSTRSGLMQIWRMK 374 Query: 378 KDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSK--------LYSIDLNGRNE 428 DGS+ + +D N P SP G++L+F + L ++ ++G Sbjct: 375 ADGSEPEQVTDDQYNNWFPHLSPDGKTLVFLSYGQDVEPANHPYYKHVFLRTMPVSGGAP 434 Query: 429 TLI----NTPAYASDPQWVG 444 ++ + P W Sbjct: 435 RIVAYLYGGQGTINVPSWSP 454 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 15/207 (7%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + ++ +S K+ + + G LT L +SP+ + V Y Sbjct: 262 WGADMIAISHHTEEHDGKSIIYKLPVRGGIPEQLTLQGPSFLHG--WSPDNKYVIYTAER 319 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 ++ T ++ + + +S +GK + + M I+ + + Sbjct: 320 GGK-WNIWRTTTDGKGEEAQLTDSPGLSDGSEYSPDGKYIYFNSTRSGLMQIWRMKADGS 378 Query: 293 ATERLTNTLFINISASYSPDSSQIVFES---DREGKEQLY-------VMQSNGSDQKRIS 342 E++T+ + N SPD +VF S D E Y M +G + ++ Sbjct: 379 EPEQVTDDQYNNWFPHLSPDGKTLVFLSYGQDVEPANHPYYKHVFLRTMPVSGGAPRIVA 438 Query: 343 --QDKEASYFDPVWSPQGDLIAFTKFS 367 + + P WSP G +AF + Sbjct: 439 YLYGGQGTINVPSWSPDGRKVAFVSHT 465 >gi|115377195|ref|ZP_01464407.1| peptidase M28 [Stigmatella aurantiaca DW4/3-1] gi|310821212|ref|YP_003953570.1| peptidase m28 [Stigmatella aurantiaca DW4/3-1] gi|115365778|gb|EAU64801.1| peptidase M28 [Stigmatella aurantiaca DW4/3-1] gi|309394284|gb|ADO71743.1| Peptidase M28 [Stigmatella aurantiaca DW4/3-1] Length = 927 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 38/299 (12%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK-VA 227 ++ + F V SG + + Y + P+ P++ Sbjct: 76 DRIFRMTVEPFSETQVSSGKGATTCAHFLPGDQELIYASTHLGGDACPPK--PDRSMGYV 133 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 +A YD D+ + + + R + G + + +G + + +D +D+Y + Sbjct: 134 WALYDSYDVFKANADGSGVTRLTETPGYDAEGTVCAK---DG-SIIFTSTRDGDIDLYRM 189 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESD--------------------REGKEQ 327 D RLTNT + A ++ D S+IV+ + R K + Sbjct: 190 DKDGGNVRRLTNTPGYDGGAFFNADCSKIVWRASRPRPGKELEDYQGLLARGLVRPSKLE 249 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKDGSQ- 382 LYV ++GS+ K+I+ A+ F P + P G I F+ G +F I + DGS Sbjct: 250 LYVANADGSEAKQITWL-NAASFAPFFHPNGQRILFSSNYGDPKGREFDIWAVNVDGSNL 308 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKK-----DGDTGSKLYSIDLNGRNETLINTPAY 436 ER+ P +SP G+ L FS + GDT L + T + T A Sbjct: 309 ERITTAPGFDGFPMFSPDGKWLAFSSNRATAPGQGDTNVFLARWVEDAAPVTSVQTAAD 367 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 102/295 (34%), Gaps = 53/295 (17%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 A++R LT + +S + +++++ + T + ++ + + Sbjct: 41 ADLRQLTFGGENAEAY--WSFDGKQLSFQANRGDMGCDRIFRMTVEPFSETQVSSGKGAT 98 Query: 261 LAPRFSSNGKRALISVQKDEA--------------------MDIYSVDLQSNATERLTNT 300 F + + + D++ + + RLT T Sbjct: 99 TCAHFLPGDQELIYASTHLGGDACPPKPDRSMGYVWALYDSYDVFKANADGSGVTRLTET 158 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + + I+F S R+G LY M +G + +R++ + ++ Sbjct: 159 PGYDAEGTVCAKDGSIIFTSTRDGDIDLYRMDKDGGNVRRLT-NTPGYDGGAFFNADCSK 217 Query: 361 IAFTKFSGE--------------------KFAIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 I + K + V DGS+ + + ++ AP + P Sbjct: 218 IVWRASRPRPGKELEDYQGLLARGLVRPSKLELYVANADGSEAKQITWLNAASFAPFFHP 277 Query: 400 SGRSLIFSRKKDGDTGSK--LYSIDLNGRNETLINT-------PAYASDPQWVGF 445 +G+ ++FS G + +++++++G N I T P ++ D +W+ F Sbjct: 278 NGQRILFSSNYGDPKGREFDIWAVNVDGSNLERITTAPGFDGFPMFSPDGKWLAF 332 >gi|116619169|ref|YP_821325.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116222331|gb|ABJ81040.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 877 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 118/319 (36%), Gaps = 28/319 (8%) Query: 152 RKIAHTISDDIYQSITGEKGD-FNSRILFVSESVVSGIIKNSLCVMDRD-GANIRYLTPS 209 R++ IY + T ++ F++ S S+ V R+ G R+ + Sbjct: 419 RRLVQFPRGSIYGNPTARSSISWSPDGRFLAFSGTEDDNPPSIWVASRESGEAHRFSSTP 478 Query: 210 RDQI-LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP----KRIGNFRSMILAPR 264 R + P FSP+ +AY D V L + P + ++ I Sbjct: 479 RGYLSDSSPAFSPDGHTIAYVRARDTFSRAVVLQEIHAGGTPQGKEREATSYDKTIQELA 538 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 + +G+ ++SV++ A L I S S ++ +E R Sbjct: 539 WQPDGRGLILSVRQGGEHAALLRLTLDGAMHPLGIDNGIVRWPSLSRTGRRMAYE-KRHI 597 Query: 325 KEQLYVM--QSNGSDQKRISQDKEASYFD-------PVWSPQGDLIAFTKFSGEKFAIGV 375 +Y M S + Q A+ D P+ SP G + F + I V Sbjct: 598 DTNIYRMEGPSADGGARPFDQLGVAAVVDSTALDREPMLSPDGRRMVFNSDRSGSYEIYV 657 Query: 376 MKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 DG+ + L L +P WSP G++++F R ++G S +Y+I+ G + + Sbjct: 658 ANADGTDQVALTAMGLTALGSPRWSPDGQTVVFDRYENGH--SMIYTINAGGGKPRRVTS 715 Query: 434 -------PAYASDPQWVGF 445 P+Y+ D W+ F Sbjct: 716 EEFRDIRPSYSHDGAWIYF 734 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 100/232 (43%), Gaps = 16/232 (6%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + EP SP+ +++ + + D +Y+ + + + +PR+S + Sbjct: 626 DSTALDREPMLSPDGRRMVFNS-DRSGSYEIYVANADGTDQVALTAMGLTALGSPRWSPD 684 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G+ + ++ IY+++ R+T+ F +I SYS D + I F S+R G+ ++ Sbjct: 685 GQTVVFDRYENGHSMIYTINAGGGKPRRVTSEEFRDIRPSYSHDGAWIYFASNRSGRLEI 744 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + G ++I+ + F+ SP G L+ + G + M +G + L++ Sbjct: 745 WKVPPGGGKPQQITHNFGTEPFE---SPDGRLLYYMNDQG----LWSMPVEGGEPTLVLP 797 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYASD 439 ++ + ++ +GRS+ + L+ + + GR P SD Sbjct: 798 EAVMY--RYALAGRSIYYFAD-----ARSLWVLRTDTGRKFEYARFPRDVSD 842 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 96/296 (32%), Gaps = 23/296 (7%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 +S + + + +G + + + + +EP SP+ Sbjct: 292 ESPRRLGWYWTAALAVGLAIGAAGGWWWARRGVAASMWGPVRPLTTYSGLEYEPALSPDG 351 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 ++VA+A D + AP R+ + +P +S +G + Q Sbjct: 352 KQVAFAWDGDGKDNFNIYVRLVDGGAPLRLTTDAAADHSPSWSPDGSQVAFLRQN----A 407 Query: 284 IYSVDLQSNATERLTNTL--FINISA------SYSPDSSQIVFESDREGK-EQLYVMQSN 334 ++ V RL I + S+SPD + F + ++V Sbjct: 408 VFLVPSLGGVERRLVQFPRGSIYGNPTARSSISWSPDGRFLAFSGTEDDNPPSIWVASRE 467 Query: 335 GSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK-------KDGSQERL 385 + R + S P +SP G IA+ + V++ G + Sbjct: 468 SGEAHRFSSTPRGYLSDSSPAFSPDGHTIAYVRARDTFSRAVVLQEIHAGGTPQGKEREA 527 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 D +Q W P GR LI S ++ G+ + L + L+G L P Sbjct: 528 TSYDKTIQELAWQPDGRGLILSVRQGGEHAALL-RLTLDGAMHPLGIDNGIVRWPS 582 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 99/251 (39%), Gaps = 26/251 (10%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R++F S+ S + V + DG + LT L PR+SP+ Q V + Y++ Sbjct: 642 RMVFNSDRSGS----YEIYVANADGTDQVALTAMGLTALGSPRWSPDGQTVVFDRYENGH 697 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 + +Y ++ P+R+ + + P +S +G + + ++I+ V + Sbjct: 698 SM-IYTINAG-GGKPRRVTSEEFRDIRPSYSHDGAWIYFASNRSGRLEIWKVPPGGGKPQ 755 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 ++T+ SPD + + +D+ L+ M G + + + + Sbjct: 756 QITHNFG--TEPFESPDGRLLYYMNDQG----LWSMPVEGGEPTLVLPEAVMYRYALA-- 807 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQ-------ERLLVEDSNLQAPTWSPSGRSLIFSR 408 G I + + ++ V++ D + R + + + S R+++F++ Sbjct: 808 --GRSIYYFA---DARSLWVLRTDTGRKFEYARFPRDVSDFGTGTLFSVSADERTILFAQ 862 Query: 409 KKDGDTGSKLY 419 ++ KL Sbjct: 863 TDRQESDLKLV 873 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 53/332 (15%), Positives = 107/332 (32%), Gaps = 80/332 (24%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 G ++ V DG LT P +SP+ +VA+ + V+L+ + Sbjct: 360 GDGKDNFNIYVRLVDGGAPLRLTTD-AAADHSPSWSPDGSQVAFLRQNA-----VFLVPS 413 Query: 245 RIDRAPKRIGNFRSMI-------LAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATER 296 + + R I + +S +G+ S +D+ I+ +S R Sbjct: 414 LGGVERRLVQFPRGSIYGNPTARSSISWSPDGRFLAFSGTEDDNPPSIWVASRESGEAHR 473 Query: 297 LTNTL---FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP- 352 ++T + S ++SPD I + R+ + V+Q + +++EA+ +D Sbjct: 474 FSSTPRGYLSDSSPAFSPDGHTIAYVRARDTFSRAVVLQEIHAGGTPQGKEREATSYDKT 533 Query: 353 ----VWSPQGDLIAFTKFSGEKF------------------------------------- 371 W P G + + G + Sbjct: 534 IQELAWQPDGRGLILSVRQGGEHAALLRLTLDGAMHPLGIDNGIVRWPSLSRTGRRMAYE 593 Query: 372 ------AIGVM---KKDGSQE--------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 I M DG ++ + + P SP GR ++F+ + G Sbjct: 594 KRHIDTNIYRMEGPSADGGARPFDQLGVAAVVDSTALDREPMLSPDGRRMVFNSDRSGS- 652 Query: 415 GSKLYSIDLNGRNETLINTPA--YASDPQWVG 444 ++Y + +G ++ + P+W Sbjct: 653 -YEIYVANADGTDQVALTAMGLTALGSPRWSP 683 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 1/66 (1%) Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYAS 438 G L P SP G+ + F+ DG +Y ++G L A Sbjct: 330 GPVRPLTTYSGLEYEPALSPDGKQVAFAWDGDGKDNFNIYVRLVDGGAPLRLTTDAAADH 389 Query: 439 DPQWVG 444 P W Sbjct: 390 SPSWSP 395 >gi|322437622|ref|YP_004219712.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] gi|321165515|gb|ADW71218.1| WD40-like beta Propeller containing protein [Acidobacterium sp. MP5ACTX9] Length = 621 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 90/278 (32%), Gaps = 32/278 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + +M G LT ++ +SP+ + +AYA+ + + + APK Sbjct: 60 QIVLMPASGGWPETLTSTQGGKNGL-AWSPDGRSIAYASNGN------IWLVSVSGGAPK 112 Query: 252 RIGNFR--------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R+ N S AP +S +G+ L + I V T LT Sbjct: 113 RLTNAPAGGGDPRQSADRAPSWSPDGRWILFESGRRGVNSIMVVSPDGAVTSFLTPPRLE 172 Query: 304 NISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKR---------ISQDKEASYF 350 SA +SP QIV+ + G+ + + + + S Sbjct: 173 ATSAKFSPKGDQIVYTTRARDYFSGRLETLRFDTQSGQPAGKPTILYTAPVDRGGGWSIR 232 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRK 409 WSP G + + I + G R + + P +SP G+ + F Sbjct: 233 GADWSPDGKTLVTVLQNSGWEHIYTLPASGGAPRQITDGQFEDTDPIYSPDGKHIAFISS 292 Query: 410 KDGDTGSKLYSIDLNGRNETLIN---TPAYASDPQWVG 444 + ++ + G T + P S QW Sbjct: 293 RGLLEARNVFIMLATGGEPTQLAKFEVPGMVSQVQWSP 330 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 98/269 (36%), Gaps = 29/269 (10%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS-------RDQILFE 216 +++T +G N ++ ++ ++ G + LT + R Sbjct: 72 ETLTSTQGGKNGLAWSPDGRSIAYASNGNIWLVSVSGGAPKRLTNAPAGGGDPRQSADRA 131 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P +SP+ + + + + + ++ + + R + +FS G + + + Sbjct: 132 PSWSPDGRWILFES--GRRGVNSIMVVSPDGAVTSFLTPPRLEATSAKFSPKGDQIVYTT 189 Query: 277 QK----DEAMDIYSVDLQSNATE---------RLTNTLFINI-SASYSPDSSQIVFESDR 322 + ++ D QS + +I A +SPD +V Sbjct: 190 RARDYFSGRLETLRFDTQSGQPAGKPTILYTAPVDRGGGWSIRGADWSPDGKTLVTVLQN 249 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDG 380 G E +Y + ++G ++I+ D + DP++SP G IAF G E + +M G Sbjct: 250 SGWEHIYTLPASGGAPRQIT-DGQFEDTDPIYSPDGKHIAFISSRGLLEARNVFIMLATG 308 Query: 381 SQERLLVE---DSNLQAPTWSPSGRSLIF 406 + L + + WSP R L F Sbjct: 309 GEPTQLAKFEVPGMVSQVQWSPDSRKLYF 337 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 106/335 (31%), Gaps = 44/335 (13%) Query: 75 RSDVFNLISQDSF-KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDV 133 R+ L+ + +T+ W+ GR I + L V Sbjct: 57 RAGQIVLMPASGGWPETLTSTQGGKNGLAWSP-------DGRSIAYASNG---NIWLVSV 106 Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 + R+ A G + ILF S NS+ Sbjct: 107 SGGAPKRLTNAPAGGGDPRQSADRAPSW------SPDGRW---ILFESGRRG----VNSI 153 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V+ DGA +LTP R + +FSP ++ Y T D L R D + Sbjct: 154 MVVSPDGAVTSFLTPPRLEATSA-KFSPKGDQIVYTT-RARDYFSGRLETLRFDTQSGQP 211 Query: 254 GNFRSM-------------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++ I +S +GK + +Q IY++ A ++T+ Sbjct: 212 AGKPTILYTAPVDRGGGWSIRGADWSPDGKTLVTVLQNSGWEHIYTLPASGGAPRQITDG 271 Query: 301 LFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQ 357 F + YSPD I F S R +++M + G + +++ + WSP Sbjct: 272 QFEDTDPIYSPDGKHIAFISSRGLLEARNVFIMLATGGEPTQLAKFEVPGMVSQVQWSPD 331 Query: 358 GDLIAFTKFSG-EKFAIGVMKK-DGSQERLLVEDS 390 + F S E + V S L + Sbjct: 332 SRKLYFNHLSPVETSNLLVQDLGSTSAPSYLTHTT 366 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 26/111 (23%) Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRK 409 D S G +AF G I +M G E L WSP GRS+ ++ Sbjct: 43 DAAISLDGKTLAF----GRAGQIVLMPASGGWPETLTSTQGGKNGLAWSPDGRSIAYASN 98 Query: 410 KDGDTGSKLYSIDLNG-RNETLINTPAYASDP--------------QWVGF 445 ++ + ++G + L N PA DP +W+ F Sbjct: 99 ------GNIWLVSVSGGAPKRLTNAPAGGGDPRQSADRAPSWSPDGRWILF 143 >gi|24371617|ref|NP_715659.1| amidohydrolase [Shewanella oneidensis MR-1] gi|24345370|gb|AAN53104.1|AE015453_6 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 1049 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 26/237 (10%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +A+A + V + K I + S +G+ + + D IY Sbjct: 8 IAHADEVQKPSWDVNAPTNAPLKKVK-IDVNEGTWMNLSVSPDGQHLVFDLLGD----IY 62 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 + + + L + + YSP+ I F SD +G + +++M ++GS+ + ++ + Sbjct: 63 QIPVTGGEAKPLAQGISWQMQPVYSPNGKHIAFTSDADGGDNIWIMNADGSNPRTVTSET 122 Query: 346 EASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ----APT 396 P WSP + S + + G + L E N + P Sbjct: 123 FRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDEKDLGEPA 182 Query: 397 WSPSGRSLIFSRK--------KDGDTGSKLYSI----DLNGRNETLINTPAYASDPQ 441 +SP GR + FS+ D+ + +Y I G E LI A P Sbjct: 183 YSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTKTGNIEILIEGTGGAIRPT 239 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 31/236 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q + + DI ++ + K + S + P +S NGK + Sbjct: 45 SVSPDGQHLVF--DLLGDIYQIPV----TGGEAKPLAQGISWQMQPVYSPNGKHIAFTSD 98 Query: 278 KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVM 331 D +I+ ++ + +T+ F + S ++SPDS ++ F + R G ++++ Sbjct: 99 ADGGDNIWIMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWLY 158 Query: 332 QSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVM 376 G + +++ + E +P +SP G I F++ + I Sbjct: 159 HVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRY 218 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 +L+E PT SP G L + ++ D S LY +DL +G L Sbjct: 219 DTKTGNIEILIEGTGGAIRPTPSPDGTKLAYIKRD--DFQSSLYLLDLKSGETTKL 272 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 36/270 (13%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SPN + +A+ Sbjct: 38 EGTWMNLSVSPDGQHLVFDLLGDIYQIPVTGGEAKPLAQGIS-WQMQPVYSPNGKHIAFT 96 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN-----GKRALISVQKDEAMDI 284 + D + +++M+ ++ +P +S + G++ + + A ++ Sbjct: 97 S-DADGGDNIWIMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEV 155 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD-------------REGKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 156 WLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKI 215 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + + I + P SP G +A+ K + ++ ++ + L Sbjct: 216 KRYDTKTGNIE-ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLFG 274 Query: 389 D------------SNLQAPTWSPSGRSLIF 406 D + W+ + + F Sbjct: 275 DLDRDMQETWAIHGVYPSMAWTQDNKDIFF 304 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 76/203 (37%), Gaps = 23/203 (11%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR--IGNFRSMILAPRFSSNGKRALISVQ 277 SP+ KVA+ E + +++L + + +GN L P++S +GK + + Sbjct: 359 SPDGSKVAF-----EALGKIWLKSLPDGKMSRLTELGNDIG-ELYPQWSRDGKNIVFTTW 412 Query: 278 KD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQ 327 D + + + + ++LT + +++P+ +V+ + G Sbjct: 413 NDQDQGAVQVISAKGGKAKQLTTEPGKYVEPTFAPNGELVVYRKTQGGNLTPRTWSQEPG 472 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLL 386 +Y + +I+ + + F + I F + + + DG +R+ Sbjct: 473 IYKVDLKTKQNTKITAEGYQAQFGAS----AERIFFMNSGDDDTPQLASINLDGFDKRVH 528 Query: 387 VEDSNLQAPTWSPSGRSLIFSRK 409 + SP G L F+ + Sbjct: 529 YSSKHATEFRVSPDGEQLAFAER 551 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 103/300 (34%), Gaps = 53/300 (17%) Query: 192 SLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDED------------IL 237 + + G LT P+ ++ L EP +SP+ + + ++ D I Sbjct: 154 EVWLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIY 213 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 ++ DT+ I I P S +G + + D +Y +DL+S T +L Sbjct: 214 KIKRYDTKTGNIEILIEGTGGAIR-PTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKL 272 Query: 298 TNTLFINI-----------SASYSPDSSQIVFESDREGKEQLYVMQ-------------S 333 L ++ S +++ D+ I F + + +L V Sbjct: 273 FGDLDRDMQETWAIHGVYPSMAWTQDNKDIFFWA-KGKINRLNVANKTVTNVPFSVKTQL 331 Query: 334 NGSDQKRISQDKEASYFD------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + R QD + FD SP G +AF I + + L Sbjct: 332 DVQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEALG----KIWLKSLPDGKMSRLT 387 Query: 388 EDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 E N P WS G++++F+ D D G+ G+ + L P +P + Sbjct: 388 ELGNDIGELYPQWSRDGKNIVFTTWNDQDQGAVQVISAKGGKAKQLTTEPGKYVEPTFAP 447 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 22/185 (11%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQ 315 M+ + S +G + I+ L RLT L +I +S D Sbjct: 352 MLRMAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLT-ELGNDIGELYPQWSRDGKN 406 Query: 316 IVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--- 371 IVF + + + + V+ + G K+++ + Y +P ++P G+L+ + K G Sbjct: 407 IVFTTWNDQDQGAVQVISAKGGKAKQLTTE-PGKYVEPTFAPNGELVVYRKTQGGNLTPR 465 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I + Q + + + S + F D +L SI+L+G Sbjct: 466 TWSQEPGIYKVDLKTKQNTKITAEGYQA--QFGASAERIFFM-NSGDDDTPQLASINLDG 522 Query: 426 RNETL 430 ++ + Sbjct: 523 FDKRV 527 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G + F I + G + + L + + Q P +SP+G+ Sbjct: 37 NEGTWMNLSVSPDGQHLVFDLLGD----IYQIPVTGGEAKPLAQGISWQMQPVYSPNGKH 92 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ DG G ++ ++ +G N + + + + P W Sbjct: 93 IAFTSDADG--GDNIWIMNADGSNPRTVTSETFRLLNSPAWSP 133 >gi|71277933|ref|YP_269288.1| amidohydrolase family protein [Colwellia psychrerythraea 34H] gi|71143673|gb|AAZ24146.1| amidohydrolase family protein [Colwellia psychrerythraea 34H] Length = 1071 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 25/208 (12%) Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + + +GK + + D IY++ L + + +SPD I Sbjct: 45 GTWMNVDLNPDGKTIIFDLLGD----IYTMPASGGEATPLMTDIAWQMQPRFSPDGKYIA 100 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KFSGEKFA 372 F SD +G + L++M+++GS+ K ++ + P WSP G+ I +T S Sbjct: 101 FTSDEDGGDNLWIMKADGSEAKAVTTETFRLLNSPAWSPDGNYIVGRKHYTGTRSLGAGE 160 Query: 373 IGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLYS 420 + + K G +L + N Q P +S G+ + FS+ D+ +Y Sbjct: 161 VWMYHKSGGNGVMLTKRPNEQKDLGEPAFSHDGKYVYFSQDATPGKSFHYSKDSEKGIYK 220 Query: 421 IDL----NGRNETLINTPAYASDPQWVG 444 I G + +++ A P Sbjct: 221 IKRLELETGEIKVVVSGKGGAIRPTLSP 248 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 90/223 (40%), Gaps = 28/223 (12%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ + + + D +Y M A + + + + PRFS +GK + +D Sbjct: 54 PDGKTIIFDLLGD-----IYTMPASGGEATPLMTDI-AWQMQPRFSPDGKYIAFTSDEDG 107 Query: 281 AMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQSN 334 +++ + + + +T F + S ++SPD + IV + R G ++++ + Sbjct: 108 GDNLWIMKADGSEAKAVTTETFRLLNSPAWSPDGNYIVGRKHYTGTRSLGAGEVWMYHKS 167 Query: 335 GSDQKRISQDKEA--SYFDPVWSPQGDLIAFTK-------------FSGEKFAIGVMKKD 379 G + +++ +P +S G + F++ + I ++ + Sbjct: 168 GGNGVMLTKRPNEQKDLGEPAFSHDGKYVYFSQDATPGKSFHYSKDSEKGIYKIKRLELE 227 Query: 380 GSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + +++V PT SP G+ L F + D + LY++ Sbjct: 228 TGEIKVVVSGKGGAIRPTLSPDGKYLAFISRDDFQSNLYLYNL 270 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 101/312 (32%), Gaps = 56/312 (17%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 + + + + + G N LT P+ + L EP FS + + V ++ Sbjct: 149 HYTGTRSLGAGEVWMYHKSGGNGVMLTKRPNEQKDLGEPAFSHDGKYVYFSQDATPGKSF 208 Query: 239 VYLMDTRID-----------RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y D+ K + + + + P S +GK + D ++Y Sbjct: 209 HYSKDSEKGIYKIKRLELETGEIKVVVSGKGGAIRPTLSPDGKYLAFISRDDFQSNLYLY 268 Query: 288 DLQSNATERLTNTLFINIS-----------ASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +L++ ++ + L ++ +++PDS +VF S ++ + + Sbjct: 269 NLKNGEQSKVYDGLDRDMQETWAIHGVYPTMAWTPDSEGLVFWS----GGKINKLSLDSK 324 Query: 337 DQKRISQDKEAS----------------------YFDPVWSPQGDLIAFTKFSGEKFAIG 374 K I + + D SP G L + + Sbjct: 325 KAKVIDFHVKTTKKIQTAVRFPQDLDQKSFDTKMLRDVKVSPNGKLAVYESMG----HLY 380 Query: 375 VMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + L + + P++S G+ +++ D + G G+ +T+ Sbjct: 381 TKSLPKGKPKRLTKQKSQFELNPSFSRDGKKIVYVSWDDKNLGQVRVVSSRGGKGKTITR 440 Query: 433 TPAYASDPQWVG 444 P +P + Sbjct: 441 EPGKYVEPSFSP 452 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 22/201 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQK 278 SPN + Y + + PKR+ +S L P FS +GK+ + Sbjct: 365 SPNGKLAVYESMGH------LYTKSLPKGKPKRLTKQKSQFELNPSFSRDGKKIVYVSWD 418 Query: 279 DEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQL 328 D+ + + V + + +T + S+SPD +V+ G + Sbjct: 419 DKNLGQVRVVSSRGGKGKTITREPGKYVEPSFSPDGKAVVYRKVTGGFITDPTWGLNPGV 478 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + G K ++++ P + + D I + GE I + DG + L + Sbjct: 479 YAVSVKGGKAKLVTEEG----VQPHFGARNDRI-YVTRDGETPHISRIDIDGQHDTKLYQ 533 Query: 389 DSNLQAPTWSPSGRSLIFSRK 409 SP G L F+ + Sbjct: 534 GKFASEYRVSPDGNYLAFAER 554 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 97/297 (32%), Gaps = 42/297 (14%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 G + + L + + + M G L +PRFSP+ + +A+ Sbjct: 43 RSGTWMNVDLNPDGKTIIFDLLGDIYTMPASGGEATPLMTD-IAWQMQPRFSPDGKYIAF 101 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMD 283 + D++ +++M A ++ +P +S +G + + + A + Sbjct: 102 TS-DEDGGDNLWIMKADGSEAKAVTTETFRLLNSPAWSPDGNYIVGRKHYTGTRSLGAGE 160 Query: 284 IYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQ 327 ++ LT ++S D + F D G + Sbjct: 161 VWMYHKSGGNGVMLTKRPNEQKDLGEPAFSHDGKYVYFSQDATPGKSFHYSKDSEKGIYK 220 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + ++ + K + K + P SP G +AF + + + ++ + Sbjct: 221 IKRLELETGEIKVVVSGKGGAIR-PTLSPDGKYLAFISRDDFQSNLYLYNLKNGEQSKVY 279 Query: 388 EDSNLQA----------PT--WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + PT W+P L+F G K+ + L+ + +I+ Sbjct: 280 DGLDRDMQETWAIHGVYPTMAWTPDSEGLVFWS------GGKINKLSLDSKKAKVID 330 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 100/250 (40%), Gaps = 38/250 (15%) Query: 218 RFSPNQQKVAYATYD-------DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF----- 265 ++P+ + + + + D +V + + + F + F Sbjct: 300 AWTPDSEGLVFWSGGKINKLSLDSKKAKVIDFHVKTTKKIQTAVRFPQDLDQKSFDTKML 359 Query: 266 -----SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFE 319 S NGK A+ +Y+ L +RLT ++ S+S D +IV+ Sbjct: 360 RDVKVSPNGKLAVYESMG----HLYTKSLPKGKPKRLTKQKSQFELNPSFSRDGKKIVYV 415 Query: 320 S-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------- 369 S D + Q+ V+ S G K I+++ Y +P +SP G + + K +G Sbjct: 416 SWDDKNLGQVRVVSSRGGKGKTITRE-PGKYVEPSFSPDGKAVVYRKVTGGFITDPTWGL 474 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + G + +L+ E+ P + + + +DG+T + ID++G+++T Sbjct: 475 NPGVYAVSVKGGKAKLVTEEG--VQPHFGARNDRIYVT--RDGET-PHISRIDIDGQHDT 529 Query: 430 LINTPAYASD 439 + +AS+ Sbjct: 530 KLYQGKFASE 539 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 + ++ + +P G I F I M G + L+ D Q P +SP G+ Sbjct: 43 RSGTWMNVDLNPDGKTIIFDLLGD----IYTMPASGGEATPLMTDIAWQMQPRFSPDGKY 98 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G L+ + +G + T + + P W Sbjct: 99 IAFTSDEDG--GDNLWIMKADGSEAKAVTTETFRLLNSPAWSP 139 Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 51/200 (25%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +I++VS + V+ G + +T + + EP FSP+ + V Y Sbjct: 411 KIVYVS---WDDKNLGQVRVVSSRGGKGKTITREPGKYV-EPSFSPDGKAVVY------- 459 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +++ I P + +Y+V ++ + Sbjct: 460 ---------------RKVT--GGFITDPTW-------------GLNPGVYAVSVKGGKAK 489 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +T + + + +I D + + +G ++ Q K AS + S Sbjct: 490 LVTEEG---VQPHFGARNDRIYVTRD-GETPHISRIDIDGQHDTKLYQGKFASEY--RVS 543 Query: 356 PQGDLIAFTKFSGEKFAIGV 375 P G+ +AF E+F + V Sbjct: 544 PDGNYLAFA----ERFKVFV 559 >gi|163757603|ref|ZP_02164692.1| putative TolB-like protein [Hoeflea phototrophica DFL-43] gi|162285105|gb|EDQ35387.1| putative TolB-like protein [Hoeflea phototrophica DFL-43] Length = 278 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 15/208 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++ + D ++++ + G S +S +G ++D Sbjct: 74 SPDGERLVISDSTDTGQSCIWVLPIAGGIPERITGQVPSWWHG--WSPDGSTLAYVGRRD 131 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + IY++ L E L + YSPD + I F SDR G L+ + + G + + Sbjct: 132 DGFGIYTISLAGGDEEHLISGGGHYDGPDYSPDGAFIWFNSDRTGSMDLWRIPAAGGEPQ 191 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVE--- 388 ++++D A++F P +P G + + + + ++ R L+ Sbjct: 192 QMTRDDRANWF-PHPAPDGRSVLYLSYAPRTEGHPRDRDVELRLLDLADQSVRTLLSLFG 250 Query: 389 -DSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + P WSP G F R + + Sbjct: 251 GQGTINVPCWSPDGSRFAFVRYQPAEAN 278 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +++ P ++P+ VA D + RV L D P + + S +G+R Sbjct: 24 RLIEAPNWTPDG--VALIVNGDGRMFRVPLE--APDLVPIDTSHAINCNNDHGVSPDGER 79 Query: 272 ALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 +IS D I+ + + ER+T + +SPD S + + R+ +Y Sbjct: 80 LVISDSTDTGQSCIWVLPIAGGIPERIT-GQVPSWWHGWSPDGSTLAYVGRRDDGFGIYT 138 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-ED 389 + G D++ + Y P +SP G I F + + G + + + +D Sbjct: 139 ISLAGGDEEHLISGGGH-YDGPDYSPDGAFIWFNSDRTGSMDLWRIPAAGGEPQQMTRDD 197 Query: 390 SNLQAPTWSPSGRSLIFSRK------KDGDTGSKLYSIDLNGRNET----LINTPAYASD 439 P +P GRS+++ D +L +DL ++ L + Sbjct: 198 RANWFPHPAPDGRSVLYLSYAPRTEGHPRDRDVELRLLDLADQSVRTLLSLFGGQGTINV 257 Query: 440 PQWVG 444 P W Sbjct: 258 PCWSP 262 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 82/204 (40%), Gaps = 15/204 (7%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 L +Y + T + + +I AP ++ +G +++ + ++ V L++ Sbjct: 2 MRSALCIYEIATGT---VEEVLATPRLIEAPNWTPDG----VALIVNGDGRMFRVPLEAP 54 Query: 293 ATERLTNTLFINIS--ASYSPDSSQIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + IN + SPD ++V S G+ ++V+ G +RI+ + Sbjct: 55 DLVPIDTSHAINCNNDHGVSPDGERLVISDSTDTGQSCIWVLPIAGGIPERIT--GQVPS 112 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSR 408 + WSP G +A+ + F I + G +E L+ + P +SP G + F+ Sbjct: 113 WWHGWSPDGSTLAYVGRRDDGFGIYTISLAGGDEEHLISGGGHYDGPDYSPDGAFIWFNS 172 Query: 409 KKDGDTGSKLYSIDLNGRNETLIN 432 + G L+ I G + Sbjct: 173 DRTGSM--DLWRIPAAGGEPQQMT 194 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 14/199 (7%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + S + ++ + V+ G +T + +SP+ +AY D D + Sbjct: 80 LVISDSTDTGQSCIWVLPIAGGIPERIT--GQVPSWWHGWSPDGSTLAYVGRRD-DGFGI 136 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y + I + P +S +G + + +MD++ + +++T Sbjct: 137 YTISLAGGDEEHLI-SGGGHYDGPDYSPDGAFIWFNSDRTGSMDLWRIPAAGGEPQQMTR 195 Query: 300 TLFINISASYSPDSSQIVFESD--------REGKEQLYVMQSNGSDQKRI--SQDKEASY 349 N +PD +++ S R+ +L ++ + + + + Sbjct: 196 DDRANWFPHPAPDGRSVLYLSYAPRTEGHPRDRDVELRLLDLADQSVRTLLSLFGGQGTI 255 Query: 350 FDPVWSPQGDLIAFTKFSG 368 P WSP G AF ++ Sbjct: 256 NVPCWSPDGSRFAFVRYQP 274 >gi|329896695|ref|ZP_08271688.1| amidohydrolase family protein [gamma proteobacterium IMCC3088] gi|328921631|gb|EGG29007.1| amidohydrolase family protein [gamma proteobacterium IMCC3088] Length = 1092 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 31/220 (14%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 L S +G R + D D+Y V ++ +RLT TL + +SPD Sbjct: 58 TTDEGTWLNVDVSPDGTRIVF----DMLGDLYLVPIEGGEAQRLTTTLAQEVQPRFSPDG 113 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KFSG 368 + + + SD G ++VM +++ I+ +K S +P W P G I FT S Sbjct: 114 TSLTYISDANGGNNIFVMDLASKEERPITTEKFRSLTNPRWHPNGSGIVARKHFTGSRSL 173 Query: 369 EKFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRK--------KDGDTGS 416 + DG L E + P +SP GR L +++ + + Sbjct: 174 GSGEMWFYHLDGGSGVQLTTKRNEQQDENDPVYSPDGRYLFYTQDATPGPYFQYNKNPHE 233 Query: 417 KLYS---IDLN-GRNETLINTPAYA------SDPQWVGFM 446 +Y +DL+ G N L+ P A D +++ ++ Sbjct: 234 GIYVTRRLDLDTGENIALLGGPGGAVRPEPSPDGRYIAYV 273 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 104/307 (33%), Gaps = 31/307 (10%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 I ++ F + V+ + + L M G + + S Sbjct: 13 AILAALMTPPYIFAAPG--VATDSDAEEADSPLHQMIWQGPTETVEFTTDEGTWLNVDVS 70 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ ++ + D +YL+ +R+ + + PRFS +G + Sbjct: 71 PDGTRIVFDMLGD-----LYLVPIE-GGEAQRLTTTLAQEVQPRFSPDGTSLTYISDANG 124 Query: 281 AMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIV----FESDRE-GKEQLYVMQSN 334 +I+ +DL S +T F + + + P+ S IV F R G +++ + Sbjct: 125 GNNIFVMDLASKEERPITTEKFRSLTNPRWHPNGSGIVARKHFTGSRSLGSGEMWFYHLD 184 Query: 335 GSDQKRISQDKE--ASYFDPVWSPQGDLIAFT-------------KFSGEKFAIGVMKKD 379 G +++ + DPV+SP G + +T + + D Sbjct: 185 GGSGVQLTTKRNEQQDENDPVYSPDGRYLFYTQDATPGPYFQYNKNPHEGIYVTRRLDLD 244 Query: 380 GSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 + LL P SP GR + + ++ D+ LY G+++ L + Sbjct: 245 TGENIALLGGPGGAVRPEPSPDGRYIAYVKRIQTDSVLMLYD-RRTGQSKALYRKLDHDQ 303 Query: 439 DPQWVGF 445 W F Sbjct: 304 QEVWALF 310 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 100/332 (30%), Gaps = 63/332 (18%) Query: 163 YQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPR 218 ++S+T + N + + + + DG + LT R+ Q +P Sbjct: 146 FRSLTNPRWHPNGSGIVARKHFTGSRSLGSGEMWFYHLDGGSGVQLTTKRNEQQDENDPV 205 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-----------IGNFRSMILAPRFSS 267 +SP+ + + Y Y + R + + P S Sbjct: 206 YSPDGRYLFYTQDATPGPYFQYNKNPHEGIYVTRRLDLDTGENIALLGGPGGAVRPEPSP 265 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDSSQI 316 +G+ + + D ++ ++ L L + + +++PD+ I Sbjct: 266 DGRYIAYVKRIQTDSVLMLYDRRTGQSKALYRKLDHDQQEVWALFGLYPNFAWTPDNDSI 325 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEAS----------------------YFDPVW 354 VF + +L+ + I S D Sbjct: 326 VFWA----GGKLHRINVESKAVVGIPFTASVSQVLAKTTKATPKVGVDEVTSMMLRDFAT 381 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G + F + + + L + D AP +S G+ L+F+ +DG Sbjct: 382 SPDGRYVVFHSLG----HLYYADVQNPKPKRLTKLDGFEYAPQFSADGKYLVFAHWQDGA 437 Query: 414 TGSKLYSIDLNGRN-----ETLINTPAYASDP 440 GS +Y G + + P + P Sbjct: 438 YGS-IYRGSWRGAKGVSGLAKITSEPGHYQHP 468 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 68/359 (18%) Query: 139 IIGKKFFSS--PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 ++G + +++ T++ ++ + + + + ++S++ N++ VM Sbjct: 80 MLGDLYLVPIEGGEAQRLTTTLAQEVQPRFSPDG----TSLTYISDANGG----NNIFVM 131 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKR 252 D R +T + + L PR+ PN + + ++ + Sbjct: 132 DLASKEERPITTEKFRSLTNPRWHPNGSGIVARKHFTGSRSLGSGEMWFYHLDGGSGVQL 191 Query: 253 IG--NFRSMILAPRFSSNGKRALIS----------VQKDEAMDIYS---VDLQSNATERL 297 N + P +S +G+ + K+ IY +DL + L Sbjct: 192 TTKRNEQQDENDPVYSPDGRYLFYTQDATPGPYFQYNKNPHEGIYVTRRLDLDTGENIAL 251 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS--------- 348 + SPD I + + L + K + + + Sbjct: 252 LGGPGGAVRPEPSPDGRYIAYVKRIQTDSVLMLYDRRTGQSKALYRKLDHDQQEVWALFG 311 Query: 349 -YFDPVWSPQGDLIAFTKFSGEKFAIGV-------MKKDGSQERLLVED-------SNLQ 393 Y + W+P D I F G+ I V + S ++L + + Sbjct: 312 LYPNFAWTPDNDSIVFWA-GGKLHRINVESKAVVGIPFTASVSQVLAKTTKATPKVGVDE 370 Query: 394 APTW-------SPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + SP GR ++F + LY D+ N + + L + PQ+ Sbjct: 371 VTSMMLRDFATSPDGRYVVF------HSLGHLYYADVQNPKPKRLTKLDGFEYAPQFSA 423 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 27/204 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + V + + +Y D + + PKR+ AP+FS++GK + + +D Sbjct: 382 SPDGRYVVFHSLGH-----LYYADVQ-NPKPKRLTKLDGFEYAPQFSADGKYLVFAHWQD 435 Query: 280 EAM-DIYSVDLQS----NATERLTNTLFINISASYSPDSSQIVFE-----SDR----EGK 325 A IY + + ++T+ + + +V++ S R + Sbjct: 436 GAYGSIYRGSWRGAKGVSGLAKITSEPGHYQHPDVNNQGA-VVYQKQTGNSFRGLLYGLE 494 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 +YV + G + +R+ ++ F DLIA+ G+K I +K+DG+Q+R Sbjct: 495 PGIYVSDNKG-EARRVLREGRKPIFLND-----DLIAYEHGGGDKRFISTVKRDGTQQRT 548 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRK 409 ++ P+G + + + Sbjct: 549 RYSLGSISEWAIDPAGEHIAYRKD 572 >gi|114561197|ref|YP_748710.1| amidohydrolase [Shewanella frigidimarina NCIMB 400] gi|114332490|gb|ABI69872.1| amidohydrolase [Shewanella frigidimarina NCIMB 400] Length = 1060 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 25/206 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + S +G+ + + D IY + + + L + + YSPD I Sbjct: 51 EGTWMNVNVSPDGEHIVFDLLGD----IYQIPIAGGEAKPLAQGIAWQMQPVYSPDGKYI 106 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL-IAFTKFSGEKF---- 371 F SD +G + +++M ++G++ I+ + P WSP +A F+G + Sbjct: 107 AFTSDEDGGDNIWIMNADGTNPHAITTETFRLLNSPAWSPDSQYLVARKHFTGTRSLGAG 166 Query: 372 AIGVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDTGSKLY 419 + + G + L E N Q P +SP GR + FS+ D+ +Y Sbjct: 167 EVWMFHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDSTPGKTFHYSKDSVKGIY 226 Query: 420 SI----DLNGRNETLINTPAYASDPQ 441 I G E LI A P Sbjct: 227 KIKRYDTQTGDIEVLIEGTGGAIRPT 252 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 30/234 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + DI ++ + K + + + P +S +GK + +D Sbjct: 60 SPDGEHIVF--DLLGDIYQIPI----AGGEAKPLAQGIAWQMQPVYSPDGKYIAFTSDED 113 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ ++ +T F + S ++SPDS +V F R G ++++ Sbjct: 114 GGDNIWIMNADGTNPHAITTETFRLLNSPAWSPDSQYLVARKHFTGTRSLGAGEVWMFHV 173 Query: 334 NGSDQKRISQDKEA--SYFDPVWSPQGDLIAFTKFS-------------GEKFAIGVMKK 378 G + ++++ +P +SP G I F++ S + I Sbjct: 174 AGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDSTPGKTFHYSKDSVKGIYKIKRYDT 233 Query: 379 DGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 +L+E PT SP G++L + ++ + LY++DL ET + Sbjct: 234 QTGDIEVLIEGTGGAIRPTPSPDGKTLAYIKRDGFQST--LYTLDLKSGEETKL 285 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 111/314 (35%), Gaps = 57/314 (18%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S S + D +I L + P SP+ + +AY D +Y Sbjct: 216 HYSKDSVKGIYKIKRYDTQTGDIEVLIEGTGGAI-RPTPSPDGKTLAYIKRD-GFQSTLY 273 Query: 241 LMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 +D + K + ++ + K + + I +D+ Sbjct: 274 TLDLKSGEETKLYDKLDRDMQETWAIHGVYPTMSWTKDNKHIVFWAKG----KINKLDVD 329 Query: 291 SNATE----------------RLTNTLFIN-------ISASYSPDSSQIVFESDREGKEQ 327 S R T L + A SPD ++VFE+ + Sbjct: 330 SKQVTDIPFSVSTQRDIQPSVRFTQNLDKDEFDVKMLRMAQVSPDGEKVVFEA----LGK 385 Query: 328 LYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERL 385 ++V KR+++ D + + P WS G I FT ++ ++ + V+ G + ++ Sbjct: 386 IWVRDIKDGKHKRLTRLDDDINELFPQWSRDGKDIVFTTWNDQQQGTVSVVSARGGKAKV 445 Query: 386 LV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK-------LYSIDLNGRNETLIN----T 433 L E PT+SP G +++ + + G + LY +D+ G+ T + Sbjct: 446 LTNEPGKYVEPTFSPDGEYIVYRKARGGYMTPRTWSQEPGLYKVDIKGKQSTKLTASGHQ 505 Query: 434 PAYASDPQWVGFMD 447 P + +D V FMD Sbjct: 506 PQFGNDSDRVYFMD 519 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 117/342 (34%), Gaps = 61/342 (17%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLT--PSR 210 H I+ + ++ + +S+ L + + + + G LT P+ Sbjct: 128 PHAITTETFRLLNSPAWSPDSQYLVARKHFTGTRSLGAGEVWMFHVAGGEGVKLTERPNE 187 Query: 211 DQILFEPRFSPNQQKVA------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 + L EP +SP+ + + Y+ + I ++ DT+ I Sbjct: 188 QKDLGEPAYSPDGRYIYFSQDSTPGKTFHYSKDSVKGIYKIKRYDTQTGDIEVLIEGTGG 247 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----------A 307 I P S +GK + +Y++DL+S +L + L ++ Sbjct: 248 AIR-PTPSPDGKTLAYIKRDGFQSTLYTLDLKSGEETKLYDKLDRDMQETWAIHGVYPTM 306 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQK----------------RISQDKEASYFD 351 S++ D+ IVF + K ++ + + R +Q+ + FD Sbjct: 307 SWTKDNKHIVFWA----KGKINKLDVDSKQVTDIPFSVSTQRDIQPSVRFTQNLDKDEFD 362 Query: 352 ------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGR 402 SP G+ + F I V + + L +D N P WS G+ Sbjct: 363 VKMLRMAQVSPDGEKVVFEALG----KIWVRDIKDGKHKRLTRLDDDINELFPQWSRDGK 418 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++F+ D G+ G+ + L N P +P + Sbjct: 419 DIVFTTWNDQQQGTVSVVSARGGKAKVLTNEPGKYVEPTFSP 460 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 99/324 (30%), Gaps = 70/324 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 I F S+ + +M+ DG N +T ++L P +SP+ Q + + Sbjct: 105 YIAFTSDEDGGDN----IWIMNADGTNPHAITTETFRLLNSPAWSPDSQYLVARKHFTGT 160 Query: 232 DDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALIS----------VQKD 279 V++ K N + + P +S +G+ S KD Sbjct: 161 RSLGAGEVWMFHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDSTPGKTFHYSKD 220 Query: 280 ---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 I D Q+ E L I + SPD + + + LY + Sbjct: 221 SVKGIYKIKRYDTQTGDIEVLIEGTGGAIRPTPSPDGKTLAYIKRDGFQSTLYTLDLKSG 280 Query: 337 DQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 ++ ++ + Y W+ I F K I + D Q + Sbjct: 281 EETKLYDKLDRDMQETWAIHGVYPTMSWTKDNKHIVFWA----KGKINKLDVDSKQVTDI 336 Query: 387 ---VEDSNLQAPT---------------------WSPSGRSLIFSRKKDGDTGSKLYSID 422 V P+ SP G ++F + K++ D Sbjct: 337 PFSVSTQRDIQPSVRFTQNLDKDEFDVKMLRMAQVSPDGEKVVF------EALGKIWVRD 390 Query: 423 L-NGRNETLINTPAYASD--PQWV 443 + +G+++ L ++ PQW Sbjct: 391 IKDGKHKRLTRLDDDINELFPQWS 414 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 104/296 (35%), Gaps = 42/296 (14%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + + + + + + + G + L +P +SP+ + +A+ Sbjct: 51 EGTWMNVNVSPDGEHIVFDLLGDIYQIPIAGGEAKPLAQG-IAWQMQPVYSPDGKYIAFT 109 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMDI 284 + D++ +++M+ ++ +P +S + + + + + A ++ Sbjct: 110 S-DEDGGDNIWIMNADGTNPHAITTETFRLLNSPAWSPDSQYLVARKHFTGTRSLGAGEV 168 Query: 285 YSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESDRE-------------GKEQL 328 + + +LT +YSPD I F D G ++ Sbjct: 169 WMFHVAGGEGVKLTERPNEQKDLGEPAYSPDGRYIYFSQDSTPGKTFHYSKDSVKGIYKI 228 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + D + + + P SP G +A+ K G + + + +E L + Sbjct: 229 KRYDTQTGDIEVLI-EGTGGAIRPTPSPDGKTLAYIKRDGFQSTLYTLDLKSGEETKLYD 287 Query: 389 --DSNLQA--------P--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 D ++Q P +W+ + ++F K K+ +D++ + T I Sbjct: 288 KLDRDMQETWAIHGVYPTMSWTKDNKHIVFWAK------GKINKLDVDSKQVTDIP 337 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 90/232 (38%), Gaps = 27/232 (11%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAPRFSSNGKRALISVQK 278 SP+ +KV + E + ++++ D + + + + L P++S +GK + + Sbjct: 372 SPDGEKVVF-----EALGKIWVRDIKDGKHKRLTRLDDDINELFPQWSRDGKDIVFTTWN 426 Query: 279 DEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 D+ + V + + LTN + ++SPD IV+ R G L Sbjct: 427 DQQQGTVSVVSARGGKAKVLTNEPGKYVEPTFSPDGEYIVYRKARGGYMTPRTWSQEPGL 486 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + G +++ AS P + D + F SGE + +G ++R Sbjct: 487 YKVDIKGKQSTKLT----ASGHQPQFGNDSDRVYF-MDSGETPEFASIGMNGFEKRTHYT 541 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + SP+G L F+ + ++Y ET+ P ++ P Sbjct: 542 SDHATEFRLSPNGEHLAFAER------FRVYVTPFAKHGETIAIGPKASNLP 587 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 91/253 (35%), Gaps = 43/253 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++ + + + + + I ++ + ++ P + R + + RF Sbjct: 307 SWTKDNKHIVF--WAKGKINKLDVDSKQVTDIPFSVSTQRDIQPSVRFTQNLDKDEFDVK 364 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 S +G++ + I+ D++ +RLT + + +S D I Sbjct: 365 MLRMAQVSPDGEKVVFEA----LGKIWVRDIKDGKHKRLTRLDDDINELFPQWSRDGKDI 420 Query: 317 VFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF---- 371 VF + + ++ + V+ + G K ++ + Y +P +SP G+ I + K G Sbjct: 421 VFTTWNDQQQGTVSVVSARGGKAKVLTNE-PGKYVEPTFSPDGEYIVYRKARGGYMTPRT 479 Query: 372 -----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + G Q L + P + + F D + SI +NG Sbjct: 480 WSQEPGLYKVDIKGKQSTKLTASGHQ--PQFGNDSDRVYFM---DSGETPEFASIGMNGF 534 Query: 427 NETLINTPAYASD 439 + T +A++ Sbjct: 535 EKRTHYTSDHATE 547 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRS 403 E ++ + SP G+ I F I + G + + L + Q P +SP G+ Sbjct: 50 TEGTWMNVNVSPDGEHIVFDLLGD----IYQIPIAGGEAKPLAQGIAWQMQPVYSPDGKY 105 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 + F+ +DG G ++ ++ +G N I T + + P W Sbjct: 106 IAFTSDEDG--GDNIWIMNADGTNPHAITTETFRLLNSPAWSP 146 Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 91/281 (32%), Gaps = 72/281 (25%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 + DDI + D + + + + ++ V+ G + LT + + E Sbjct: 401 RLDDDINELFPQWSRDGKD----IVFTTWNDQQQGTVSVVSARGGKAKVLTNEPGKYV-E 455 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR-FSSNGKRALIS 275 P FSP+ + + Y R + PR +S Sbjct: 456 PTFSPDGEYIVY-------------------------RKARGGYMTPRTWS--------- 481 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +Y VD++ + +LT + + DS ++ F D + + NG Sbjct: 482 ----QEPGLYKVDIKGKQSTKLTASGH---QPQFGNDSDRVYFM-DSGETPEFASIGMNG 533 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 +++ + + SP G+ +AF E+F + V E + + P Sbjct: 534 FEKR--THYTSDHATEFRLSPNGEHLAFA----ERFRVYVTPFAKHGETIAIGPKASNLP 587 Query: 396 ------------TWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +W+ L ++ G LY D++ Sbjct: 588 ITQLSARAGESISWNGKNNQLYWT------LGPDLYQADVD 622 >gi|269836774|ref|YP_003319002.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786037|gb|ACZ38180.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 655 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 46/231 (19%) Query: 259 MILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPD 312 M+ P+ S +G V + + I++V + LT + + +SPD Sbjct: 16 MVSDPQVSPDGTLVAFVVTRMYRKENCYRSGIWTVPVAGGEPRPLTAGTARDSTPRWSPD 75 Query: 313 SSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------- 364 + F S R G K QL+ + ++G + ++++ E PVWSP+GD +AF Sbjct: 76 GRWLAFLSTRGGDKPQLWYLPADGGEARQLTNLPEG-VEQPVWSPRGDALAFVSKVGPEK 134 Query: 365 --------------KFSGEKF------AIGVMKKDGSQE-----RLLVEDSN-LQAPTWS 398 +F GE F I V+ D S R + + + P WS Sbjct: 135 QSDSDVRVIRTIRYRFDGEGFLDDKYRQIWVVPFDPSNPSMPEARQITDGPYEHRDPAWS 194 Query: 399 PSGRSLIFSRKKDGDTGS----KLYSIDLNGRNETLIN-TPAYASDPQWVG 444 P+G + F+ + D ++++ G I P S+P W Sbjct: 195 PTGHEIAFTAARHPDWELGVLQDIWAVSAAGGPPRKITCAPGAWSEPVWSP 245 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 87/303 (28%), Gaps = 58/303 (19%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-------------- 231 G K L + DG R LT + + +P +SP +A+ + Sbjct: 85 RGGDKPQLWYLPADGGEARQLTNLPEGVE-QPVWSPRGDALAFVSKVGPEKQSDSDVRVI 143 Query: 232 --------------DDEDILRVYLMDTRIDRAP--KRIGNFRSMILAPRFSSNGKRALIS 275 D + V D P ++I + P +S G + Sbjct: 144 RTIRYRFDGEGFLDDKYRQIWVVPFDPSNPSMPEARQITDGPYEHRDPAWSPTGHEIAFT 203 Query: 276 VQKDEAM------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------FESDRE 323 + DI++V ++T +SPD + I + Sbjct: 204 AARHPDWELGVLQDIWAVSAAGGPPRKITCAPGAWSEPVWSPDGTTIALLGPSDYRRADH 263 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDP-------------VWSPQGDLIAFTKFSGEK 370 ++ + + G + + S D W +G+ I F Sbjct: 264 ANVLVWTVLAGGGAPVPRTAALDRSAGDTTLGDIPRFSSSPVAWDSRGEAIHFLASDHGN 323 Query: 371 FAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + D ER++ + P +F+ G ++Y+ +G NE Sbjct: 324 THLFRVSLADNRIERVIGGQRRVGMVVPIPGDAGFVFAASTPTSPG-EIYACGPDGGNER 382 Query: 430 LIN 432 + Sbjct: 383 QLT 385 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 65/261 (24%), Gaps = 39/261 (14%) Query: 183 SVVSGIIKNSLCVMDRDGANI----RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 + V+ D +N +P +SP ++A+ D Sbjct: 153 EGFLDDKYRQIWVVPFDPSNPSMPEARQITDGPYEHRDPAWSPTGHEIAFTAARHPDWEL 212 Query: 239 VYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRAL------ISVQKDEAMDIYSVD 288 L D P++I P +S +G + +++V Sbjct: 213 GVLQDIWAVSAAGGPPRKITCAPGAWSEPVWSPDGTTIALLGPSDYRRADHANVLVWTVL 272 Query: 289 LQSNATERLT---NTLFINI----------SA-SYSPDSSQIVFESDREGKEQLYVMQSN 334 A T + + S ++ I F + G L+ + Sbjct: 273 AGGGAPVPRTAALDRSAGDTTLGDIPRFSSSPVAWDSRGEAIHFLASDHGNTHLFRVSLA 332 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ- 393 + +R+ + + I DG ER L + + Sbjct: 333 DNRIERVIGGQRRVGMVVPIPGDAGFVFAASTPTSPGEIYACGPDGGNERQLTDVNREWL 392 Query: 394 --------APTW--SPSGRSL 404 W SP G + Sbjct: 393 EEVELAEPEEIWATSPDGTRI 413 Score = 40.4 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 395 PTWSPSGRSLIF----SRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWV 443 P SP G + F +K+ S ++++ + G + TP ++ D +W+ Sbjct: 20 PQVSPDGTLVAFVVTRMYRKENCYRSGIWTVPVAGGEPRPLTAGTARDSTPRWSPDGRWL 79 Query: 444 GFM 446 F+ Sbjct: 80 AFL 82 >gi|109896795|ref|YP_660050.1| amidohydrolase [Pseudoalteromonas atlantica T6c] gi|109699076|gb|ABG38996.1| amidohydrolase [Pseudoalteromonas atlantica T6c] Length = 1113 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 34/212 (16%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S NG++ + D D+Y + LT NI ++SPD +I F SDR G Sbjct: 70 VSPNGEKFVF----DMLGDLYVSSIGGGEATSLTQDFAWNIQPTFSPDGKKIAFISDRGG 125 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKD 379 ++VM S+GS+ +++++K P WSP G I + S I + Sbjct: 126 MSNVWVMNSDGSNLVQVTKEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIWLYHHS 185 Query: 380 GSQERLL-------VEDSNLQAPTWSPSGRSLIFSR--------KKDGDTGSKLYSIDL- 423 G +L + N+ P +SP G+ L +++ + D +++I Sbjct: 186 GGDGMVLKKRVHGNPDQKNIADPAFSPDGKYLYYTQDVSPGSTFDYNRDPLKSIFAITRY 245 Query: 424 ---NGRNETLINT------PAYASDPQWVGFM 446 G E I+ P + D + + F+ Sbjct: 246 DMNTGEEERYISGTGGAVVPTPSPDGKQIAFI 277 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 34/257 (13%) Query: 201 ANIRYLTPSRDQILFEP-RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 N+ +T + D+ + SPN +K + D+L + + + + Sbjct: 51 FNLNEVTINTDETTWSSLDVSPNGEKFVF------DMLGDLYVSSIGGGEATSLTQDFAW 104 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIV- 317 + P FS +GK+ + +++ ++ + ++T I S +SPD IV Sbjct: 105 NIQPTFSPDGKKIAFISDRGGMSNVWVMNSDGSNLVQVTKEKNNLIHSPKWSPDGQYIVA 164 Query: 318 ----FESDREGKEQLYVMQSNGSD----QKRISQDKEA-SYFDPVWSPQGDLIAFTKFSG 368 S ++++ +G D +KR+ + + + DP +SP G + +T+ Sbjct: 165 NKGIMSSRSIPAGEIWLYHHSGGDGMVLKKRVHGNPDQKNIADPAFSPDGKYLYYTQDVS 224 Query: 369 EK-------------FAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 FAI + +ER + PT SP G+ + F R+ T Sbjct: 225 PGSTFDYNRDPLKSIFAITRYDMNTGEEERYISGTGGAVVPTPSPDGKQIAFIRRVKEKT 284 Query: 415 GSKLYSIDLNGRNETLI 431 G L+ D+ E+L+ Sbjct: 285 G--LFVKDIATGVESLL 299 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 119/332 (35%), Gaps = 74/332 (22%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-------Y 228 +I F+S+ +++ VM+ DG+N+ +T ++ ++ P++SP+ Q + Sbjct: 116 KIAFISDRGG----MSNVWVMNSDGSNLVQVTKEKNNLIHSPKWSPDGQYIVANKGIMSS 171 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILA-PRFSSNGKRALIS----------V 276 + +I + KR+ GN +A P FS +GK + Sbjct: 172 RSIPAGEIWLYHHSGGDGMVLKKRVHGNPDQKNIADPAFSPDGKYLYYTQDVSPGSTFDY 231 Query: 277 QKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +D I+++ D+ + ER + + + SPD QI F + K L+V Sbjct: 232 NRDPLKSIFAITRYDMNTGEEERYISGTGGAVVPTPSPDGKQIAFIRRVKEKTGLFVKDI 291 Query: 334 NGSDQKRIS----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA----------- 372 + + E + W P I F ++G KF Sbjct: 292 ATGVESLLYLKLERDMQEGFGSEGYFPYFDWMPNSKRIVF--WTGGKFHSIDVKTQAVKD 349 Query: 373 --------IGVMKKDGSQERLLVEDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSI 421 + + E ++ W SP+G++++F KLY Sbjct: 350 IPVSVKATVKYADAVRFDVDVAPEKFAVKMARWAQKSPNGQNIVF------QALGKLYIK 403 Query: 422 DL-NGRNETLINT-------PAYASDPQWVGF 445 ++ +G+ + L P Y+ D + + F Sbjct: 404 EIKSGKVKRLTRQNDHDEYYPRYSHDGKKIVF 435 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 99/268 (36%), Gaps = 45/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V G LT +P FSP+ +K+A+ + D + V++M++ + Sbjct: 84 DLYVSSIGGGEATSLTQDF-AWNIQPTFSPDGKKIAFIS-DRGGMSNVWVMNSDGSNLVQ 141 Query: 252 RIGNFRSMILAPRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSNA---TERLTNTLFI 303 ++I +P++S +G+ + +S + A +I+ ++ + Sbjct: 142 VTKEKNNLIHSPKWSPDGQYIVANKGIMSSRSIPAGEIWLYHHSGGDGMVLKKRVHGNPD 201 Query: 304 N---ISASYSPDSSQIV----------FESDREGKEQLY---VMQSNGSDQKRISQDKEA 347 ++SPD + F+ +R+ + ++ N +++R Sbjct: 202 QKNIADPAFSPDGKYLYYTQDVSPGSTFDYNRDPLKSIFAITRYDMNTGEEERYISGTGG 261 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV------------EDSNLQAP 395 + P SP G IAF + EK + V E LL + Sbjct: 262 AVV-PTPSPDGKQIAFIRRVKEKTGLFVKDIATGVESLLYLKLERDMQEGFGSEGYFPYF 320 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 W P+ + ++F TG K +SID+ Sbjct: 321 DWMPNSKRIVFW------TGGKFHSIDV 342 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 97/265 (36%), Gaps = 44/265 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR--------------IGNFRSMILAPR 264 + PN +++ + T + V + + + + + R Sbjct: 322 WMPNSKRIVFWTGGKFHSIDVKTQAVKDIPVSVKATVKYADAVRFDVDVAPEKFAVKMAR 381 Query: 265 F---SSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFES 320 + S NG+ + +Y +++S +RLT YS D +IVF + Sbjct: 382 WAQKSPNGQNIVFQA----LGKLYIKEIKSGKVKRLTRQNDHDEYYPRYSHDGKKIVFTT 437 Query: 321 DREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------K 370 + + + ++G +K IS++ + +P +S LI + K +G + Sbjct: 438 WNDKDLGSVRTVSASGRSEKVISKE-PGHFIEPSFSTDDKLITYNKKTGGYLLAPEYSVE 496 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD--TGSKLYSIDLNGRNE 428 I G + R + ++ + AP ++ + F+ G +L S+DLNG ++ Sbjct: 497 PGIYTATVKGEKHRRVAKNGS--APHFAGDNSRVYFTESVSGSDYPEQQLVSVDLNGEDK 554 Query: 429 TLINTPAY-------ASDPQWVGFM 446 + D +W+ F+ Sbjct: 555 REHLYGGDKIAEYRLSPDKKWIAFV 579 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 23/228 (10%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-----NSLCVMDRDGANIRYLTPSRD 211 +D + + F ++ ++ +G L + + ++ LT D Sbjct: 359 KYADAVRFDVDVAPEKFAVKMARWAQKSPNGQNIVFQALGKLYIKEIKSGKVKRLTRQND 418 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+S + +K+ + T++D+D+ V + + R+ K I + P FS++ K Sbjct: 419 HDEYYPRYSHDGKKIVFTTWNDKDLGSVRTV-SASGRSEKVISKEPGHFIEPSFSTDDKL 477 Query: 272 ALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 + + IY+ ++ R+ + ++ D+S++ F Sbjct: 478 ITYNKKTGGYLLAPEYSVEPGIYTATVKGEKHRRVAKNGS---APHFAGDNSRVYFTESV 534 Query: 323 EGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 G +QL + NG D++ + + SP IAF Sbjct: 535 SGSDYPEQQLVSVDLNGEDKREHLYGGD-KIAEYRLSPDKKWIAFVYQ 581 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 76/211 (36%), Gaps = 27/211 (12%) Query: 218 RF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 R+ SPN Q + + ++Y+ + + + + PR+S +GK+ + Sbjct: 381 RWAQKSPNGQNIVFQALG-----KLYIKEIKSGKVKRLTRQNDHDEYYPRYSHDGKKIVF 435 Query: 275 SVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-------- 325 + D + + +V + + ++ I S+S D I + G Sbjct: 436 TTWNDKDLGSVRTVSASGRSEKVISKEPGHFIEPSFSTDDKLITYNKKTGGYLLAPEYSV 495 Query: 326 -EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKF---AIGVMKKDG 380 +Y G +R++++ A P ++ + FT SG + + + +G Sbjct: 496 EPGIYTATVKGEKHRRVAKNGSA----PHFAGDNSRVYFTESVSGSDYPEQQLVSVDLNG 551 Query: 381 SQERL-LVEDSNLQAPTWSPSGRSLIFSRKK 410 +R L + SP + + F + Sbjct: 552 EDKREHLYGGDKIAEYRLSPDKKWIAFVYQY 582 >gi|226312267|ref|YP_002772161.1| peptidase [Brevibacillus brevis NBRC 100599] gi|226095215|dbj|BAH43657.1| putative peptidase [Brevibacillus brevis NBRC 100599] Length = 671 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 88/261 (33%), Gaps = 51/261 (19%) Query: 212 QILFEPRFSPNQQKVAYA--TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +P+ SP+ + +AY D+ + +L ++D S PR+S +G Sbjct: 17 RYASDPQLSPDGKTLAYVENQIDESHAYQNHLYLRKLDVDDPLPLTSGSRDTYPRWSPDG 76 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------- 319 + + I+ +D +LT + ++SPD IVF Sbjct: 77 SKISFVSNRSGKPQIWLIDANGGEARQLTRCKNGVSNPTWSPDGKYIVFSSILDEGETFA 136 Query: 320 ----------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDP 352 SD G +QL ++ + +S D ++ Sbjct: 137 DLEAAEEKEKAKAIHVGRMKYKSDDLGFIYEKNKQLAIVHVETGEVTPLS-DGPYNHTIG 195 Query: 353 VWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLI 405 WSP G +A T E + ++ +G + + L PTWSP G+ L Sbjct: 196 SWSPDGKWLAVTANRSEDPDFQHGIDVFIIPSEGGEWKKLTNSKGIFAYPTWSPDGKKLA 255 Query: 406 FSRKKDGD----TGSKLYSID 422 + + +++ D Sbjct: 256 YIGSESDTHLYAAQKRIWVYD 276 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 120/333 (36%), Gaps = 73/333 (21%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 D + ++ S +N L + D + LT PR+SP+ K+++ Sbjct: 25 SPDGKTLAYVENQIDESHAYQNHLYLRKLDVDDPLPLTSGS--RDTYPRWSPDGSKISFV 82 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE--------- 280 + +++L+D +++ ++ + P +S +GK + S DE Sbjct: 83 SNRSGKP-QIWLIDAN-GGEARQLTRCKNGVSNPTWSPDGKYIVFSSILDEGETFADLEA 140 Query: 281 ----------------------------AMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + V +++ L++ + + S+SPD Sbjct: 141 AEEKEKAKAIHVGRMKYKSDDLGFIYEKNKQLAIVHVETGEVTPLSDGPYNHTIGSWSPD 200 Query: 313 SSQIVFESDREGKE------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + ++R ++++ S G + K+++ + + + P WSP G +A+ Sbjct: 201 GKWLAVTANRSEDPDFQHGIDVFIIPSEGGEWKKLT-NSKGIFAYPTWSPDGKKLAYIGS 259 Query: 367 SGEKF------AIGVMKKDGSQERLLVED----------SNLQAP-------TWSPSGRS 403 + I V + S + + ++++P W+ GR Sbjct: 260 ESDTHLYAAQKRIWVYDFEKSDYSCITANWDVQVGDSTIGDMRSPGHPNPGAVWTADGRG 319 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + F + G++G +Y + L+G+ T++ Sbjct: 320 MYFIASERGNSG--IYHVTLDGQVTTVVTGNRN 350 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 112/323 (34%), Gaps = 69/323 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---- 230 S+I FVS K + ++D +G R LT ++ + P +SP+ + + +++ Sbjct: 77 SKISFVSNR----SGKPQIWLIDANGGEARQLTRCKNGV-SNPTWSPDGKYIVFSSILDE 131 Query: 231 -------------------------YDDEDILRVYLMDTRI------DRAPKRIGNFRSM 259 Y +D+ +Y + ++ + + Sbjct: 132 GETFADLEAAEEKEKAKAIHVGRMKYKSDDLGFIYEKNKQLAIVHVETGEVTPLSDGPYN 191 Query: 260 ILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDS 313 +S +GK ++ + E D ++ + + ++LTN+ I ++SPD Sbjct: 192 HTIGSWSPDGKWLAVTANRSEDPDFQHGIDVFIIPSEGGEWKKLTNSKGIFAYPTWSPDG 251 Query: 314 SQIVFESDRE------GKEQLYVMQSNGSDQKRIS---------------QDKEASYFDP 352 ++ + +++++V SD I+ + Sbjct: 252 KKLAYIGSESDTHLYAAQKRIWVYDFEKSDYSCITANWDVQVGDSTIGDMRSPGHPNPGA 311 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 VW+ G + F I + DG ++ + N+ + + ++++ + D Sbjct: 312 VWTADGRGMYFIASERGNSGIYHVTLDGQVTTVVTGNRNIYGFSLHENEQTVV-AAISDP 370 Query: 413 DTGSKLYSIDL-NGRNETLINTP 434 T LY + L +G + L Sbjct: 371 STPGDLYQVSLKDGEEKRLTALN 393 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 8/101 (7%) Query: 350 FDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 DP SP G +A+ + + + + K D L S P WSP G + Sbjct: 20 SDPQLSPDGKTLAYVENQIDESHAYQNHLYLRKLDVDDPLPLTSGSRDTYPRWSPDGSKI 79 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 F + G +++ ID NG + S+P W Sbjct: 80 SFVSNRSGK--PQIWLIDANGGEARQLTRCKNGVSNPTWSP 118 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 22/209 (10%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA-----TYDDEDILRVYLMDTRI 246 + ++ +G + LT S+ I P +SP+ +K+AY T+ R+++ D Sbjct: 221 DVFIIPSEGGEWKKLTNSK-GIFAYPTWSPDGKKLAYIGSESDTHLYAAQKRIWVYDFEK 279 Query: 247 DRAPKRIGNFR--------SMILAP-------RFSSNGKRALISVQKDEAMDIYSVDLQS 291 N+ + +P ++++G+ + IY V L Sbjct: 280 SDYSCITANWDVQVGDSTIGDMRSPGHPNPGAVWTADGRGMYFIASERGNSGIYHVTLDG 339 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 T +T I + + + + + SD LY + ++KR++ E F Sbjct: 340 QVTTVVTGNRNIYGFSLHENEQTVVAAISDPSTPGDLYQVSLKDGEEKRLTALNE-ELFA 398 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + P + I F G K ++K G Sbjct: 399 GMELPVPEEIEFVAKDGWKLHGWMLKPVG 427 >gi|225874010|ref|YP_002755469.1| peptidase, S9A/B/C family [Acidobacterium capsulatum ATCC 51196] gi|225793254|gb|ACO33344.1| peptidase, S9A/B/C family [Acidobacterium capsulatum ATCC 51196] Length = 696 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 127/351 (36%), Gaps = 66/351 (18%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSR----ILFVSESV--VSGIIKNSLCVMDRDGAN 202 A H ++ D + S I++ S + L ++ DG Sbjct: 22 AQAPATPHPMTIDDAFRVQNVGSPRVSPDGKWIVYTVSSTDLKADKRTTDLWMVGWDGKQ 81 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--DILRVYLMDTRIDRAPKRIGNFRSMI 260 LT D P FSP+ + +++ + +V+++D R A + + + Sbjct: 82 DMQLTFGYDGSTSSPEFSPDGRSISFLSGRKGTAKGTQVWVLDRRGGEARQLTDVKKGDL 141 Query: 261 LAPRFSSNGKRALIS--------------------------------------VQKDEAM 282 +S + K L++ + D+ Sbjct: 142 ENYAWSPDSKELLLTIHTGGTVSANDFNDPGKHKLIPPIVMTRYHFKQDVEGYLTADDHT 201 Query: 283 DIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFES------DREGKEQLYVMQSN- 334 +Y D+ + E+LT N S +SPD +I F S DR ++V+ + Sbjct: 202 YLYLYDIATGKMEKLTAGKQYNESDGVWSPDGKEIAFVSNHTAEPDRNINTDIFVVAAKH 261 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------AIGVMKKDGSQE-RLLV 387 G++ ++++ A WSP G LIAF + K+ +GV+ DGS R+L Sbjct: 262 GAEPRQLTHYTGADAGPLSWSPDGKLIAFLRGGHVKYWQYQENHLGVIAADGSSPARILT 321 Query: 388 EDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA 435 + + +P +S G+S++ D + S+D+ G L+ T Sbjct: 322 SKFDRPVHSPQFSSDGKSIMVLVTDDRNRYPA--SVDVATGAVHRLVATEG 370 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 96/297 (32%), Gaps = 65/297 (21%) Query: 210 RDQILFEPRFSPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 R Q + PR SP+ + + Y D+ ++++ + + + +P Sbjct: 38 RVQNVGSPRVSPDGKWIVYTVSSTDLKADKRTTDLWMVGWDGKQDMQLTFGYDGSTSSPE 97 Query: 265 FSSNGKRALISVQKDE---AMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFES 320 FS +G+ + ++ +D + +LT+ ++ ++SPDS +++ Sbjct: 98 FSPDGRSISFLSGRKGTAKGTQVWVLDRRGGEARQLTDVKKGDLENYAWSPDSKELLLTI 157 Query: 321 DREGK--------------------------------------EQLYVMQSNGSDQKRIS 342 G LY+ ++++ Sbjct: 158 HTGGTVSANDFNDPGKHKLIPPIVMTRYHFKQDVEGYLTADDHTYLYLYDIATGKMEKLT 217 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF------SGEKFAIGVMKKD-GSQERLLVE-DSNLQA 394 K+ + D VWSP G IAF I V+ G++ R L Sbjct: 218 AGKQYNESDGVWSPDGKEIAFVSNHTAEPDRNINTDIFVVAAKHGAEPRQLTHYTGADAG 277 Query: 395 P-TWSPSGRSLIFSRKKDGDTGSKLY------SIDLNGRNETLINTPAYASDPQWVG 444 P +WSP G+ + F + G Y I +G + I T + P Sbjct: 278 PLSWSPDGKLIAFL--RGGHVKYWQYQENHLGVIAADGSSPARILTSKFDR-PVHSP 331 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 60/174 (34%), Gaps = 14/174 (8%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR-----VYLMDT 244 L + D + LT + + +SP+ +++A+ + + R ++++ Sbjct: 200 HTYLYLYDIATGKMEKLTAGKQYNESDGVWSPDGKEIAFVSNHTAEPDRNINTDIFVVAA 259 Query: 245 RIDRAPKRIGNFRSMILAP-RFSSNGKRALI------SVQKDEAMDIYSVDLQSNATERL 297 + P+++ ++ P +S +GK + + + + ++ R+ Sbjct: 260 KHGAEPRQLTHYTGADAGPLSWSPDGKLIAFLRGGHVKYWQYQENHLGVIAADGSSPARI 319 Query: 298 TNTLFIN--ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + F S +S D I+ + + R+ + S+ Sbjct: 320 LTSKFDRPVHSPQFSSDGKSIMVLVTDDRNRYPASVDVATGAVHRLVATEGVSW 373 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 25/185 (13%) Query: 128 FRLWDVKDRKQ---IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 L+D+ K GK++ S W I+ + ++ N+ I V+ Sbjct: 203 LYLYDIATGKMEKLTAGKQYNESDGVWSPDGKEIAFVSNHTAEPDRNI-NTDIFVVAAKH 261 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 GA R LT +SP+ + +A+ + Sbjct: 262 ---------------GAEPRQLTHYTGADAGPLSWSPDGKLIAFLRGGHVKYWQYQENHL 306 Query: 245 RI----DRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + +P RI F + +P+FSS+GK ++ V D SVD+ + A RL Sbjct: 307 GVIAADGSSPARILTSKFDRPVHSPQFSSDGKSIMVLVTDDRNRYPASVDVATGAVHRLV 366 Query: 299 NTLFI 303 T + Sbjct: 367 ATEGV 371 >gi|149370551|ref|ZP_01890240.1| WD40-like repeat/amidohydrolase domain protein [unidentified eubacterium SCB49] gi|149356102|gb|EDM44659.1| WD40-like repeat/amidohydrolase domain protein [unidentified eubacterium SCB49] Length = 1089 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 V + + + S +G+ + D DIY++ + + Sbjct: 27 WDVNNPGKDFNYKTHKFTTTEGTWMNLDVSPDGQTIVF----DMLGDIYTMPITGGKAKA 82 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + + +SPD I F SD G + ++ M ++G + +++++ + VW Sbjct: 83 IRTGIAFEVQPRFSPDGKHISFTSDAGGGDNIWTMDASGDNATQVTKENFRLLNNAVWMA 142 Query: 357 QGDL-IAFTKFSGEKF----AIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFS 407 G+ IA FS + + K G L + ++ P S G+ + +S Sbjct: 143 DGNYLIARKHFSSGRSLGAGELWQYHKTGGSGIQLTARKNDQQDVGEPFVSADGKYVYYS 202 Query: 408 RK--------KDGDTGSKLYSI---DL-NGRNETLINTPAYASDPQWVG 444 + D S++Y I DL G+ ET+ P A+ P Sbjct: 203 EDMYPGGFFQYNKDPNSQIYVIKRYDLETGKIETITGGPGGAARPTLSP 251 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 90/278 (32%), Gaps = 36/278 (12%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 T +G + + + + + + M G + + +PRFSP+ Sbjct: 41 HKFTTTEGTWMNLDVSPDGQTIVFDMLGDIYTMPITGGKAKAIRTG-IAFEVQPRFSPDG 99 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD 279 + +++ + D ++ MD D A + ++ + ++G + S + Sbjct: 100 KHISFTS-DAGGGDNIWTMDASGDNATQVTKENFRLLNNAVWMADGNYLIARKHFSSGRS 158 Query: 280 -EAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIV----------FESDREGK 325 A +++ + +LT N S D + F+ +++ Sbjct: 159 LGAGELWQYHKTGGSGIQLTARKNDQQDVGEPFVSADGKYVYYSEDMYPGGFFQYNKDPN 218 Query: 326 EQLYVM---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 Q+YV+ + I+ P SP G +AF K EK + + + + Sbjct: 219 SQIYVIKRYDLETGKIETIT-GGPGGAARPTLSPDGKTLAFVKRVREKTVLYIHNLETGE 277 Query: 383 ERLLVED------------SNLQAPTWSPSGRSLIFSR 408 E + + W P+ ++F Sbjct: 278 EYPIYDTLNKDQQEAWAIFGVYPNFDWMPNNEDIVFWS 315 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 64/395 (16%), Positives = 133/395 (33%), Gaps = 65/395 (16%) Query: 79 FNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 F L++ + + F SLGA L + K G +++ R K+ +Q Sbjct: 132 FRLLNNAVWMADGNYLIARKHFSSGRSLGAGELW--QYHKTGGSGIQLTAR----KNDQQ 185 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 +G+ F S+ + +Y S G F + + D Sbjct: 186 DVGEPFVSADGKY----------VYYSEDMYPGGF------FQYNKDPNSQIYVIKRYDL 229 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV---------YLMDTRIDRA 249 + I +T P SP+ + +A+ E + Y + +++ Sbjct: 230 ETGKIETITGGPGGAA-RPTLSPDGKTLAFVKRVREKTVLYIHNLETGEEYPIYDTLNKD 288 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISV-------------------QKDEAMDIYSVDLQ 290 + + + N + + Q D +D+ Sbjct: 289 QQEAWAIFGVYPNFDWMPNNEDIVFWSGGTFQKINIKSLAVTNIPFQADVKIDLAQTVKT 348 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + +R T T + A +PD +VF + ++Y + R++ + Y Sbjct: 349 DSPIDRTTFTSKVIRDAITTPDGKTLVFNA----LGKIYKKELPNGTPTRLTTATDFEY- 403 Query: 351 DPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSR 408 +P +P G I + ++ EK AI + +G + L E + P++S G+ ++F + Sbjct: 404 EPSLAPNGTDIVYVTWNDIEKGAIYKLNLNGGTPQKLTKEKGIYRTPSYSNDGKHIVFKK 463 Query: 409 KKDG-------DTGSKLYSIDLNGRNETLINTPAY 436 +K + +Y + +G +E +N Sbjct: 464 EKGNSDQGNSFTKNAGIYIMTADGTSEIKLNANGE 498 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 34/235 (14%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD- 279 P+ + + + ++Y + + P R+ P + NG + D Sbjct: 369 PDGKTLVFNALG-----KIYKKEL-PNGTPTRLTTATDFEYEPSLAPNGTDIVYVTWNDI 422 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-----ESDREG----KEQLYV 330 E IY ++L ++LT I + SYS D IVF SD+ +Y+ Sbjct: 423 EKGAIYKLNLNGGTPQKLTKEKGIYRTPSYSNDGKHIVFKKEKGNSDQGNSFTKNAGIYI 482 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----AIGVMKKDGSQER- 384 M ++G+ + +++ + E P ++ I F + G F + + G+ ER Sbjct: 483 MTADGTSEIKLNANGEY----PRFNEDDSRI-FLQTGGTYFGNLTKKLISVNLKGNDERE 537 Query: 385 -LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 L+ + +N P SP + + FS + + + G+ TL Sbjct: 538 HLISKYANRIVP--SPDNKWVAFSNLHK----AYVAPMPQTGKPLTLDGNSNNVP 586 Score = 83.1 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 109/327 (33%), Gaps = 61/327 (18%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQKVAYA 229 D N I S + L + G + LT ++ Q + EP S + + V Y+ Sbjct: 143 DGNYLIARKHFSSGRSLGAGELWQYHKTGGSGIQLTARKNDQQDVGEPFVSADGKYVYYS 202 Query: 230 TYDDEDILRVYLMDTRI-----------DRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 Y D + I P S +GK + Sbjct: 203 EDMYPGGFFQYNKDPNSQIYVIKRYDLETGKIETITGGPGGAARPTLSPDGKTLAFVKRV 262 Query: 279 DEAMDIYSVDLQSNATERLTNTLFIN---------ISAS--YSPDSSQIVFESDREGKEQ 327 E +Y +L++ + +TL + + + + P++ IVF S G Q Sbjct: 263 REKTVLYIHNLETGEEYPIYDTLNKDQQEAWAIFGVYPNFDWMPNNEDIVFWS--GGTFQ 320 Query: 328 -LYVMQSNGSDQK--------------------RISQDKEASYFDPVWSPQGDLIAFTKF 366 + + ++ R + + D + +P G + F Sbjct: 321 KINIKSLAVTNIPFQADVKIDLAQTVKTDSPIDRTTFTSKV-IRDAITTPDGKTLVFNAL 379 Query: 367 SGEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I + +G+ RL P+ +P+G +++ D + G+ +Y ++LNG Sbjct: 380 G----KIYKKELPNGTPTRLTTATDFEYEPSLAPNGTDIVYVTWNDIEKGA-IYKLNLNG 434 Query: 426 RNETLIN-------TPAYASDPQWVGF 445 + TP+Y++D + + F Sbjct: 435 GTPQKLTKEKGIYRTPSYSNDGKHIVF 461 >gi|116621073|ref|YP_823229.1| amidohydrolase [Candidatus Solibacter usitatus Ellin6076] gi|116224235|gb|ABJ82944.1| amidohydrolase [Candidatus Solibacter usitatus Ellin6076] Length = 1046 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 12/214 (5%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + SP+++ + D+ A +R+ P FS G Sbjct: 83 SEGTNLGATVSPDRKTIIL------DLQTALWALPFEGGAARRLTEPELEASRPDFSPTG 136 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--GKEQ 327 I+ + + LT + SPD ++I F SDR G Sbjct: 137 SLIAFQSFSGGTFHIWVMKPDGSGRRELTEGHGDDRDPRVSPDGARIAFSSDRAMKGNYD 196 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 ++ ++ + + D Y +P WSP G IA+ +G + K G Q R+++ Sbjct: 197 IWTVEVATGKLAQWTSDPSDEY-EPAWSPDGMEIAYVSGAGAIGHAVLAAKAGGQPRVII 255 Query: 388 ---EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + S + AP+WSP G+ + + + + Sbjct: 256 EAPDGSKVNAPSWSPDGKQIAYVQTTANKLRLLI 289 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 75/345 (21%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + + DF+ ++ SG + VM DG+ R LT +PR SP+ Sbjct: 123 PELEASRPDFSPTGSLIAFQSFSGGT-FHIWVMKPDGSGRRELTEGHGD-DRDPRVSPDG 180 Query: 224 QKVAYATYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 ++A+++ + ++ ++ + + + S P +S +G Sbjct: 181 ARIAFSSDRAMKGNYDIWTVEVATGKLAQW-TSDPSDEYEPAWSPDGMEIAYVSGAGAIG 239 Query: 283 DIYSVDLQSNATERLTNTLFINIS----ASYSPDSSQIVFE------------------- 319 + + S S+SPD QI + Sbjct: 240 HAVLAAKAGGQPRVII--EAPDGSKVNAPSWSPDGKQIAYVQTTANKLRLLISGKQVGSA 297 Query: 320 ------------SDR---EGKEQLYVMQSNGSDQK-----------RISQDKEASYFD-- 351 + R G +++ Q + + R + + FD Sbjct: 298 EDVFPFPAVWLSATRILYTGNGKIWKTQLATNTTENVPFKAAFAVNRAAYKRNVPDFDTT 357 Query: 352 ----------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 P SP G I F + + +M+ G L + Q P WSP G Sbjct: 358 APRTAKGILAPALSPDGKRIVFEALN----QLWLMEIGGEATPLTNDGYYKQTPVWSPDG 413 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINT--PAYASDPQWVG 444 + + +S K+G + +Y +DL + E + A A DP W Sbjct: 414 KRIAYSSDKNGT--ANVYILDLATQAEKRVTNLHEAAALDPVWSP 456 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 115/325 (35%), Gaps = 72/325 (22%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + ++ + ++ +G I +++ G + + P +SP+ +++AY Sbjct: 219 EPAWSPDGMEIAYVSGAGAIGHAVLAAKAGGQPRVIIEAPDGSKVNAPSWSPDGKQIAYV 278 Query: 230 ------------------------------------TYDDEDILRVYLMDTRIDRAP--- 250 + I + L + P Sbjct: 279 QTTANKLRLLISGKQVGSAEDVFPFPAVWLSATRILYTGNGKIWKTQLATNTTENVPFKA 338 Query: 251 ----------KRIGNFRSM-------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + + +F + ILAP S +GKR + ++ +++ Sbjct: 339 AFAVNRAAYKRNVPDFDTTAPRTAKGILAPALSPDGKRIVFEA----LNQLWLMEI-GGE 393 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 LTN + + +SPD +I + SD+ G +Y++ +KR++ EA+ DPV Sbjct: 394 ATPLTNDGYYKQTPVWSPDGKRIAYSSDKNGTANVYILDLATQAEKRVTNLHEAAALDPV 453 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL------IFS 407 WSP G IAF G + G ++ P+WS +G+ L ++ Sbjct: 454 WSPDGTQIAFQTQEGTVHIADL--ASGGSREVIRTTFEPGRPSWSKNGKVLSLAVLRAYT 511 Query: 408 -RKKDGDTGSKLYSIDLNGRNETLI 431 R ++G S + + DL + L Sbjct: 512 KRYREGT--SLILTADLQSGKQVLT 534 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 99/258 (38%), Gaps = 42/258 (16%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P SP+ +++ + + L I + N P +S +GKR Sbjct: 365 ILAPALSPDGKRIVFEALNQ-------LWLMEIGGEATPLTNDGYYKQTPVWSPDGKRIA 417 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 S K+ ++Y +DL + A +R+TN + +SPD +QI F++ +++ Sbjct: 418 YSSDKNGTANVYILDLATQAEKRVTNLHEAAALDPVWSPDGTQIAFQTQEG---TVHIAD 474 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLI------AFT-KFSGEKFAIGVMKKDGSQERL 385 + + + P WS G ++ A+T ++ I ++ L Sbjct: 475 LASGGSREVIRTTFEP-GRPSWSKNGKVLSLAVLRAYTKRYREGTSLILTADLQSGKQVL 533 Query: 386 L-------VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS--IDLNG--------RNE 428 + ++ P +SP G + + L+ +D NG NE Sbjct: 534 TEPAPYKSITTRSIDGPIYSPDGTRMAYVMD------DYLWVRPVDANGLPVSEARPINE 587 Query: 429 TLINTPAYASDPQWVGFM 446 + + P++++D + + ++ Sbjct: 588 EMTDAPSWSADGKRMLYL 605 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 94/266 (35%), Gaps = 33/266 (12%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L +M+ G + P +SP+ +++AY++ D VY++D Sbjct: 383 NQLWLMEIGGE--ATPLTNDGYYKQTPVWSPDGKRIAYSS-DKNGTANVYILDLATQAEK 439 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + L P +S +G + Q+ ++ DL S + + T F S+S Sbjct: 440 RVTNLHEAAALDPVWSPDGTQIAFQTQEG---TVHIADLASGGSREVIRTTFEPGRPSWS 496 Query: 311 PDSSQI------VFE-SDREGKEQLYVMQSNGSDQKRISQDKE-----ASYFDPVWSPQG 358 + + + REG + Q S P++SP G Sbjct: 497 KNGKVLSLAVLRAYTKRYREGTSLILTADLQSGKQVLTEPAPYKSITTRSIDGPIYSPDG 556 Query: 359 DLIAFTKFSGEKFAIGV--MKKDG--SQERLLVEDSNLQAPTWSPSGRSLIFSR------ 408 +A+ + V + +G E + + AP+WS G+ +++ Sbjct: 557 TRMAYVMDD----YLWVRPVDANGLPVSEARPINEEMTDAPSWSADGKRMLYLSAGTLRM 612 Query: 409 -KKDGDTGSKLYSIDLNGRNETLINT 433 + DG T ++L R + T Sbjct: 613 IEADGKTPPVTVPVNLTWRRQERTKT 638 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 36/245 (14%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 +D Y T RI + S+ + + ++D + +T + +P + Sbjct: 399 NDGYYKQTPVWSPDGKRIAYSSDKNGTAN----VYILDLATQAEKRVTNLHEAAALDPVW 454 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV--- 276 SP+ ++A+ T E + + + + R R P +S NGK ++V Sbjct: 455 SPDGTQIAFQT--QEGTVHIADLASGGSREVIRTTFEPGR---PSWSKNGKVLSLAVLRA 509 Query: 277 ----QKDEAMDIYSVDLQSNATERLT--------NTLFINISASYSPDSSQIVFESDREG 324 ++ I + DLQS + LT T I+ YSPD +++ + D Sbjct: 510 YTKRYREGTSLILTADLQSGK-QVLTEPAPYKSITTRSID-GPIYSPDGTRMAYVMD--- 564 Query: 325 KEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + L+V + +NG E P WS G + + + +++ DG Sbjct: 565 -DYLWVRPVDANGLPVSEARPINEEMTDAPSWSADGKRMLYLSAG----TLRMIEADGKT 619 Query: 383 ERLLV 387 + V Sbjct: 620 PPVTV 624 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 7/111 (6%) Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + I+ E + SP I + A+ + +G R L E Sbjct: 71 DPAPGVARSIT-VSEGTNLGATVSPDRKTIILDLQT----ALWALPFEGGAARRLTEPEL 125 Query: 392 LQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + P +SP+G + F G + D +GR E L DP+ Sbjct: 126 EASRPDFSPTGSLIAFQSFSGGTFHIWVMKPDGSGRRE-LTEGHGDDRDPR 175 >gi|52841869|ref|YP_095668.1| acylaminoacyl peptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628980|gb|AAU27721.1| acylaminoacyl peptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 659 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 114/306 (37%), Gaps = 58/306 (18%) Query: 195 VMDRDGANIRYLTP----SRDQILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTR 245 V+ DG + L R Q + EP SP+ + VAY V+ + Sbjct: 16 VVFHDGWAGKRLPELDDLYRIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVD 75 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S P++S NGK K+ I+ +Q N +LT+ Sbjct: 76 SKSSQRITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGE 135 Query: 304 NISASYSPDSSQIVFESDRE---------------------------GKEQLYVMQSNGS 336 ++SPDS++I F + + G++ LY+++ Sbjct: 136 VSDFTWSPDSNRIAFIAQKSVPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSK 195 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLVE- 388 +++ D + P WSP G IAF G+ + I +++ G++ER L Sbjct: 196 AITQLT-DGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHF 254 Query: 389 DSNLQAP------TWSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLI-NTPAYA 437 + P +WSP + + R + ++L ID+N ++E +I + Sbjct: 255 SGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWY 314 Query: 438 SDPQWV 443 P+W Sbjct: 315 YKPKWS 320 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 102/291 (35%), Gaps = 47/291 (16%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 DI + G + + + + I + + D + + +T + D P++S Sbjct: 38 DISEPDLSPDGKWVAYTV-SQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWS 96 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD- 279 PN + +AY + ++ + + D ++ + + +S + R QK Sbjct: 97 PNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSV 156 Query: 280 --------------------------EAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +Y V+L+S A +LT+ ++SPD Sbjct: 157 PSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDG 216 Query: 314 SQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDP------VWSPQGDLI 361 I F + DR +Y+++ ++R S +P WSP I Sbjct: 217 KYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFSGSDMNPDYDSNLSWSPDSSKI 276 Query: 362 AFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLI 405 A+ + + ++ + ++ + E+++ N P WS G+ + Sbjct: 277 AYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWYYKPKWSQDGKFIY 327 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 41/182 (22%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD + + D +++ + + +RI+ +++S P WSP G Sbjct: 41 EPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSPNGK 100 Query: 360 LIAFTKFSG--EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD----- 411 +A+ G I + ++E L D + TWSP + F +K Sbjct: 101 WLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSVPSNE 160 Query: 412 --------------------GDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVG 444 G LY ++L + T + PA++ D +++ Sbjct: 161 EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIA 220 Query: 445 FM 446 F+ Sbjct: 221 FV 222 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 32/68 (47%), Gaps = 12/68 (17%) Query: 391 NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN--------TPAYAS 438 ++ P SP G+ + ++ + D + ++++ + ++ ++ I P ++ Sbjct: 38 DISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSP 97 Query: 439 DPQWVGFM 446 + +W+ ++ Sbjct: 98 NGKWLAYL 105 >gi|311745254|ref|ZP_07719039.1| amidohydrolase family protein [Algoriphagus sp. PR1] gi|126577782|gb|EAZ82002.1| amidohydrolase family protein [Algoriphagus sp. PR1] Length = 1209 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 23/208 (11%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + ++ S +GK + D IY++ ++ +T + YSPD + Sbjct: 69 TSQGTWMSVDVSPDGKSLAFDLLGD----IYTIPIEGGKASPITTGMAYETHPRYSPDGT 124 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +I+F SDR G + L+ + + D +I++DK W+P + I K + Sbjct: 125 KILFTSDRAGSDNLWYIDMDKKDTVQITKDKNGDVPGADWTPDSEYIVVAKGR-RITKLW 183 Query: 375 VMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDGDTG-------SKLYSIDLN 424 + KDG L E+ P SP G+ + FS ++ G ++ + D + Sbjct: 184 MYHKDGGGGIQLNENPGSIKTIDPFVSPDGKKVYFS-QRSGSWNYNALLPQYQIGTYDFD 242 Query: 425 GRNETLIN-------TPAYASDPQWVGF 445 I TP + D +W+ + Sbjct: 243 KGELNTITSRYGSAFTPTLSDDGKWMVY 270 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 103/301 (34%), Gaps = 45/301 (14%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQI-LFEPRFSPNQQKVAYA----TYDDEDILR 238 V G L + +DG L + I +P SP+ +KV ++ +++ +L Sbjct: 173 VAKGRRITKLWMYHKDGGGGIQLNENPGSIKTIDPFVSPDGKKVYFSQRSGSWNYNALLP 232 Query: 239 VYLMDTRIDRAPKR--IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 Y + T + I + P S +GK + + +E + +++S + Sbjct: 233 QYQIGTYDFDKGELNTITSRYGSAFTPTLSDDGKWMVYGSRWEEKTGLVLRNIESGEEKW 292 Query: 297 LTNTLFINISASYSPDS--SQIVFESDR-----EGKEQLYVMQSNGSDQKRISQDKEASY 349 L + + S +P + F D +++ + +G I + + + Sbjct: 293 LAYPVQRDEQESIAPQGVLPAMAFTPDSKNVITSYGGKIWKIAVDGGTPTEIPFEVDVNL 352 Query: 350 -----------------------FDPVWSPQGDLIAFTKFSGEKFAIGVMK-KDGSQERL 385 D SP G +AFT + + VM +G R+ Sbjct: 353 AMGPRLYFNYEIKDTTAARATQIRDAAPSPDGKKLAFTALN----RLYVMDYPEGEPRRV 408 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN--ETLINTPAYASDPQWV 443 D PTWSP G L F + + G +L+ L N L + A P W Sbjct: 409 TDNDFTEAMPTWSPDGSQLAFVGWDESEGG-QLFKASLGNTNTVTKLSSEKALYMQPAWG 467 Query: 444 G 444 Sbjct: 468 P 468 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 90/210 (42%), Gaps = 18/210 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + +A+ D +Y + +A I + PR+S +G + L + + Sbjct: 80 SPDGKSLAFDLLGD-----IYTIPIEGGKAS-PITTGMAYETHPRYSPDGTKILFTSDRA 133 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + +++ +D+ T ++T ++ A ++PDS IV R +L++ +G Sbjct: 134 GSDNLWYIDMDKKDTVQITKDKNGDVPGADWTPDSEYIVVAKGRRIT-KLWMYHKDGGGG 192 Query: 339 KRISQD-KEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKKDGSQERLLVED 389 +++++ DP SP G + F++ SG ++ IG D + + Sbjct: 193 IQLNENPGSIKTIDPFVSPDGKKVYFSQRSGSWNYNALLPQYQIGTYDFDKGELNTITSR 252 Query: 390 -SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + PT S G+ +++ + + TG L Sbjct: 253 YGSAFTPTLSDDGKWMVYGSRWEEKTGLVL 282 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 98/293 (33%), Gaps = 38/293 (12%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 +G + S + ++ + + + +G +T PR+SP+ K+ + Sbjct: 71 QGTWMSVDVSPDGKSLAFDLLGDIYTIPIEGGKASPITTG-MAYETHPRYSPDGTKILFT 129 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + D ++ +D + + + ++ + + +++ + ++ Sbjct: 130 S-DRAGSDNLWYIDMDKKDTVQITKDKNGDVPGADWTPDSEYIVVA-KGRRITKLWMYHK 187 Query: 290 QSNATERLTNTLF----INISASYSPDSSQIVFESDREGK---------EQLYVMQSNGS 336 +L I+ SPD ++ F S R G Q+ + Sbjct: 188 DGGGGIQLNENPGSIKTID--PFVSPDGKKVYF-SQRSGSWNYNALLPQYQIGTYDFDKG 244 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL---------- 386 + I+ + S F P S G + + EK + + + +E+ L Sbjct: 245 ELNTITS-RYGSAFTPTLSDDGKWMVYGSRWEEKTGLVLRNIESGEEKWLAYPVQRDEQE 303 Query: 387 --VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 L A ++P +++I S G K++ I ++G T I Sbjct: 304 SIAPQGVLPAMAFTPDSKNVITSY------GGKIWKIAVDGGTPTEIPFEVDV 350 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 56/293 (19%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY--------- 240 + + D D + +T SR F P S + + + Y + +E V Sbjct: 233 QYQIGTYDFDKGELNTIT-SRYGSAFTPTLSDDGKWMVYGSRWEEKTGLVLRNIESGEEK 291 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL--- 297 + + R + + ++ A F+ + K + S I+ + + + Sbjct: 292 WLAYPVQRDEQESIAPQGVLPAMAFTPDSKNVITSY----GGKIWKIAVDGGTPTEIPFE 347 Query: 298 --------------------TNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 T I A+ SPD ++ F + +LYVM Sbjct: 348 VDVNLAMGPRLYFNYEIKDTTAARATQIRDAAPSPDGKKLAFTA----LNRLYVMDYPEG 403 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVEDSNLQ 393 + +R++ D + + P WSP G +AF + G + + + +L E + Sbjct: 404 EPRRVT-DNDFTEAMPTWSPDGSQLAFVGWDESEGGQLFKASLGNTNTVTKLSSEKALYM 462 Query: 394 APTWSPSGRSLIFSRKKD----------GDTGSKLYSIDLNGRNETLINTPAY 436 P W P+ R +F + ++L I NG I Sbjct: 463 QPAWGPNNRIAVFKASNQVMKDAEGPGINGSEAELVWIPANGGEFRKIMEAGN 515 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 64/161 (39%), Gaps = 17/161 (10%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L VMD R +T D P +SP+ ++A+ +D+ + +++ Sbjct: 393 NRLYVMDYPEGEPRRVTD-NDFTEAMPTWSPDGSQLAFVGWDESEGGQLFKASLGNTNTV 451 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQ------------KDEAMDIYSVDLQSNATERLT 298 ++ + +++ + P + N + A+ ++ + ++ Sbjct: 452 TKLSSEKALYMQPAWGPNNRIAVFKASNQVMKDAEGPGINGSEAELVWIPANGGEFRKIM 511 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + + ++ D+S+ VF + G L ++ +G+D+K Sbjct: 512 -EAGNHGNVHFTKDTSR-VFLNGPGGT--LLSVRWDGTDEK 548 >gi|332140282|ref|YP_004426020.1| acylaminoacyl-peptidase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550304|gb|AEA97022.1| acylaminoacyl-peptidase [Alteromonas macleodii str. 'Deep ecotype'] Length = 685 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 109/277 (39%), Gaps = 36/277 (12%) Query: 177 ILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I +V S S + ++ + DG + R L S+ + R+SP+ ++AY + ++ Sbjct: 57 IAYVRRSNDIMSDSSRANVWLASVDGKSHRPLLSSKKNY-YSIRWSPDGSRLAYLSNEEG 115 Query: 235 DI-LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 L V MDT + + S I +S +GK ++ D L Sbjct: 116 KPQLYVRWMDTGQTALVTNVTSSPSNI---TWSPDGKYIAFTMSVDAKEK----PLDVKM 168 Query: 294 TERLTNTLFINISASYSPDSSQIV---FESDREG-----KEQLYVMQSNGSDQKRISQDK 345 ++ A +SP I +++D +G ++++ S+G ++++ Sbjct: 169 PKK-------PEGAKWSPKFQYITKARYQADGKGVLDPAYTHIFIVPSDGGTARQLTSGN 221 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFA-------IGVMKKDGSQERLLVEDSNLQAPTWS 398 ++P G+ I F+ + + I + G+ E+L + +P S Sbjct: 222 YHHNGRLSFAPNGEKIYFSANRSDNWEYEPVEADIFSVDMTGNIEQLTQDKGRESSPVVS 281 Query: 399 PSGRSLIFSRKKDGD---TGSKLYSIDLNGRNETLIN 432 P G+ + ++ + D S LY ++ +G + I Sbjct: 282 PDGKYIAYAYRDDEKVMYKNSYLYVMNSDGSEQRNIT 318 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 55/235 (23%) Query: 260 ILAPRFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + + S NGK + ++ +++ + + L ++ S +SPD Sbjct: 45 VSEVQVSPNGKNIAYVRRSNDIMSDSSRANVWLASVDGKSHRPLLSSKKNYYSIRWSPDG 104 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--------- 364 S++ + S+ EGK QLYV + ++ S + WSP G IAFT Sbjct: 105 SRLAYLSNEEGKPQLYVRWMDTGQTALVTNVTS-SPSNITWSPDGKYIAFTMSVDAKEKP 163 Query: 365 -------KFSGEKF-------------------------AIGVMKKDGSQERLLVEDSNL 392 K G K+ I ++ DG R L + Sbjct: 164 LDVKMPKKPEGAKWSPKFQYITKARYQADGKGVLDPAYTHIFIVPSDGGTARQLTSGNYH 223 Query: 393 QAP--TWSPSGRSLIFSRKKDGDTGSK-----LYSIDLNGRNETLINTPAYASDP 440 +++P+G + FS + + + ++S+D+ G E L S P Sbjct: 224 HNGRLSFAPNGEKIYFSANRSDNWEYEPVEADIFSVDMTGNIEQLTQDKGRESSP 278 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 91/242 (37%), Gaps = 24/242 (9%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSL-------CVMDRDGANIRYLTPSRDQILFEPRFS 220 E ++ + +++++ K L ++ DG R LT F+ Sbjct: 172 PEGAKWSPKFQYITKARYQADGKGVLDPAYTHIFIVPSDGGTARQLTSGNYHHNGRLSFA 231 Query: 221 PNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PN +K+ ++ ++ + + + +++ + +P S +GK + Sbjct: 232 PNGEKIYFSANRSDNWEYEPVEADIFSVDMTGNIEQLTQDKGRESSPVVSPDGKYIAYAY 291 Query: 277 QKDE-----AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + DE +Y ++ + +T + ++S + D+ +I F+ G Q+ V+ Sbjct: 292 RDDEKVMYKNSYLYVMNSDGSEQRNITKDIDNSVSNFHWKDNKRIYFQQSVRGLAQVDVV 351 Query: 332 QSNGSDQKRISQDKEASYFDP----VWSPQGDLIAFTK-FSGEKFAIGVMKKDGSQERLL 386 +GS + + P + GD++A+TK + + V +ER L Sbjct: 352 SLSGSVKAVAKGLGGTTLGRPYVFGTYHAVGDVVAYTKGRTDRPADLFV---TTRKERQL 408 Query: 387 VE 388 Sbjct: 409 TA 410 >gi|221209643|ref|ZP_03582624.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD1] gi|221170331|gb|EEE02797.1| peptidase S9, prolyl oligopeptidase active site domain protein [Burkholderia multivorans CGD1] Length = 675 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 116/312 (37%), Gaps = 60/312 (19%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + + +++L ++ DG+ + PR+ P +Q +A+ + D +++ Sbjct: 34 TPDRDADDYRSALWLVCVDGSRPPRQLTFGN-ADSHPRWCPGEQALAFLS-DRGSGRQIH 91 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL--------------------------- 273 + T + + + S +++ +S +GK+ L Sbjct: 92 AIRTD-GGEARCVTDLPSGVMSFEWSPDGKQLLALCTISVDPEQRGNTQDDSDEAADRPA 150 Query: 274 ---------------ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 + D + ++++D Q+ A+ RLT F A +SPD +I F Sbjct: 151 DAPRVVWRLPYKLDGVGYTLDTEIHLHTIDAQTGASRRLTRGSFEVSEADWSPDGKRIAF 210 Query: 319 ESDREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKF 371 R+G + ++V+ ++G + ++++ AS P WSP G IA + Sbjct: 211 TRTRDGRFAHRTDVWVVDADGGNARQLTS-TIASAAFPRWSPDGRFIALIGSEHDGDAQM 269 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPT-----WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + R L +D +++ + WS L F + G ++ +G Sbjct: 270 HLWLHDVRTGDTRALGDD-DIEVVSGRTVFWSHDSTRLYFVLARHGRQEVASIAVP-DGT 327 Query: 427 NETLINTPAYAS 438 + ++ S Sbjct: 328 LQRVVTGDRQVS 339 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 19/273 (6%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 D KQ++ S R SD+ + + + L Sbjct: 118 DGKQLLALCTISVDPEQRGNTQDDSDEAADRPADAPRVVWRLPYKLDGVGYTLDTEIHLH 177 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV--YLMDTRIDRAPKR 252 +D R LT ++ +SP+ +++A+ D + ++ Sbjct: 178 TIDAQTGASRRLTRGSFEVSEA-DWSPDGKRIAFTRTRDGRFAHRTDVWVVDADGGNARQ 236 Query: 253 IGNFRSMILAPRFSSNGKRALISVQ---KDEAMDIYSVDLQSNATERLTNTLFINISAS- 308 + + + PR+S +G+ + D M ++ D+++ T L + +S Sbjct: 237 LTSTIASAAFPRWSPDGRFIALIGSEHDGDAQMHLWLHDVRTGDTRALGDDDIEVVSGRT 296 Query: 309 --YSPDSSQIVFESDREGKEQL-YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +S DS+++ F R G++++ + +G+ Q+ ++ D++ S F S +G + +T Sbjct: 297 VFWSHDSTRLYFVLARHGRQEVASIAVPDGTLQRVVTGDRQVSQF--ALSAKG--LLYTS 352 Query: 366 FSGEK-FAIGVMKKDGSQERLLVEDSNLQAPTW 397 + DGS ER L + P W Sbjct: 353 DDARTPADVWSAALDGSGERRLTD----FNPWW 381 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 74/187 (39%), Gaps = 10/187 (5%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI F + + V+D DG N R LT + F PR+SP+ + +A + + Sbjct: 207 RIAFTRTRDGRFAHRTDVWVVDADGGNARQLTSTIASAAF-PRWSPDGRFIALIGSEHDG 265 Query: 236 ILRVYLMDTRI-DRAPKRIGNFRSMILAPR---FSSNGKRALISVQKDEAMDIYSVDLQS 291 +++L + + +G+ +++ R +S + R + + ++ S+ + Sbjct: 266 DAQMHLWLHDVRTGDTRALGDDDIEVVSGRTVFWSHDSTRLYFVLARHGRQEVASIAVPD 325 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYF 350 +R+ + S +++ SD ++ +GS ++R++ ++ Sbjct: 326 GTLQRVVTGDRQVSQFALSAKG--LLYTSDDARTPADVWSAALDGSGERRLT--DFNPWW 381 Query: 351 DPVWSPQ 357 P Sbjct: 382 RDRTMPD 388 >gi|329889101|ref|ZP_08267444.1| mdsD protein [Brevundimonas diminuta ATCC 11568] gi|328844402|gb|EGF93966.1| mdsD protein [Brevundimonas diminuta ATCC 11568] Length = 1090 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 26/207 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +A S +G+ + + D IY + + + + + ++ YSPD I Sbjct: 52 EGTWMALDVSPDGREIIFDLLGD----IYVMPIGGGEARPIASGVAWDMQPRYSPDGRFI 107 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKF 371 F SDR G + L+VM +GS+ +++S + P W+P I + S Sbjct: 108 AFTSDRAGGDNLWVMDRDGSNPRQVSSETFRLLNSPAWTPDSQFIVGRKHFTSSRSLGAG 167 Query: 372 AIGVMKKDGS--QERLL---VEDSNLQAPTWSPSGRSLIFS--RKKDG------DTGSKL 418 + + + G +L + + P +SP GR + FS G D ++L Sbjct: 168 EMWMYHRSGGGSGVQLTERRTQQKDTGEPAFSPDGRYMYFSDESTPGGVFEYSKDPNTQL 227 Query: 419 YSIDL----NGRNETLINTPAYASDPQ 441 Y I G + + P + P Sbjct: 228 YVIRRLDRETGEIKPFVTGPGGSVRPT 254 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 112/362 (30%), Gaps = 98/362 (27%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYD 232 I F S+ L VMDRDG+N R ++ ++L P ++P+ Q + + + Sbjct: 107 IAFTSDRAGGDN----LWVMDRDGSNPRQVSSETFRLLNSPAWTPDSQFIVGRKHFTSSR 162 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSM---ILAPRFSSNGKRALIS----------VQKD 279 +++ + ++ R+ P FS +G+ S KD Sbjct: 163 SLGAGEMWMYHRSGGGSGVQLTERRTQQKDTGEPAFSPDGRYMYFSDESTPGGVFEYSKD 222 Query: 280 EAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 +Y + D ++ + ++ + SPD + F + LYVM Sbjct: 223 PNTQLYVIRRLDRETGEIKPFVTGPGGSVRPTPSPDGKSLAFVRRDRYQSTLYVMDLESG 282 Query: 337 DQKRI----------SQDKEASYFDPVWSPQGDLIAF----------------------- 363 + I + Y W+P I Sbjct: 283 RETPIYDALDRDMQETWAIHGVYPGFAWTPDNGSIVIWAGGKIRRIDVASKAVSEVPFRV 342 Query: 364 -------------TKFSGEKFAIGVMK-----KDGSQ---------------------ER 384 + +F + +++ DGS+ R Sbjct: 343 TDTRRVQETARFPVDVAPAQFDVKMIRWAQTSPDGSKVVFEALGNLWVRDLRNGVAGTPR 402 Query: 385 LLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 L S+ P+WS GRS++++ D + GS G T+ P + +P++ Sbjct: 403 RLTRQSDHFELYPSWSRDGRSIVYTTWNDENLGSIRVVPVAGGEGRTITTNPGHYLEPRF 462 Query: 443 VG 444 Sbjct: 463 SP 464 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 31/235 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++ + D +Y+M + I + + + PR+S +G+ + + Sbjct: 61 SPDGREIIFDLLGD-----IYVMPIG-GGEARPIASGVAWDMQPRYSPDGRFIAFTSDRA 114 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +++ +D + ++++ F + S +++PDS IV F S R G ++++ Sbjct: 115 GGDNLWVMDRDGSNPRQVSSETFRLLNSPAWTPDSQFIVGRKHFTSSRSLGAGEMWMYHR 174 Query: 334 NGSDQK-RIS--QDKEASYFDPVWSPQGDLIAFT--KFSGEKFA-----------IGVMK 377 +G +++ + ++ +P +SP G + F+ G F I + Sbjct: 175 SGGGSGVQLTERRTQQKDTGEPAFSPDGRYMYFSDESTPGGVFEYSKDPNTQLYVIRRLD 234 Query: 378 KDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 ++ + + + PT SP G+SL F R+ S LY +DL ET I Sbjct: 235 RETGEIKPFVTGPGGSVRPTPSPDGKSLAFVRRD--RYQSTLYVMDLESGRETPI 287 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 74/201 (36%), Gaps = 18/201 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQK 278 SP+ KV + + L V + + P+R+ L P +S +G+ + + Sbjct: 374 SPDGSKVVFEALGN---LWVRDLRNGVAGTPRRLTRQSDHFELYPSWSRDGRSIVYTTWN 430 Query: 279 DEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---------EQL 328 DE + I V + +T + +SPD +V+ + +G + Sbjct: 431 DENLGSIRVVPVAGGEGRTITTNPGHYLEPRFSPDGQTVVYRTSSDGYLRSAMWSREPGV 490 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + G + +++ +P + + D I G+K + + G ER + Sbjct: 491 YRVSVRGGEPVKVTDSG----ANPQFGARNDRIFLADRDGDKRVLKSVNLSGEDERTHLS 546 Query: 389 DSNLQAPTWSPSGRSLIFSRK 409 + SP R + ++ + Sbjct: 547 SEWAAEFSISPDERWIAWTER 567 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 98/271 (36%), Gaps = 37/271 (13%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 ++G + + + + + + VM G R + S +PR+SP+ + +A+ Sbjct: 51 DEGTWMALDVSPDGREIIFDLLGDIYVMPIGGGEARPI-ASGVAWDMQPRYSPDGRFIAF 109 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN-----GKRALISVQKDEAMD 283 + D +++MD + ++ +P ++ + G++ S + A + Sbjct: 110 TS-DRAGGDNLWVMDRDGSNPRQVSSETFRLLNSPAWTPDSQFIVGRKHFTSSRSLGAGE 168 Query: 284 IYSVDLQSNA-----TERLTNTLFINISASYSPDSSQIVFE--SDREG--------KEQL 328 ++ TER T ++SPD + F S G QL Sbjct: 169 MWMYHRSGGGSGVQLTERRTQQKDT-GEPAFSPDGRYMYFSDESTPGGVFEYSKDPNTQL 227 Query: 329 YVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 YV++ + I P SP G +AF + + + VM + +E + Sbjct: 228 YVIRRLDRETGEIKPFVTGPGGSVRPTPSPDGKSLAFVRRDRYQSTLYVMDLESGRETPI 287 Query: 387 VE--DSNLQA----------PTWSPSGRSLI 405 + D ++Q W+P S++ Sbjct: 288 YDALDRDMQETWAIHGVYPGFAWTPDNGSIV 318 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 102/289 (35%), Gaps = 54/289 (18%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQIL--------FEP--RFSPNQQKVAYATYDD 233 V +++L VMD + + + D+ + P ++P+ + + Sbjct: 265 VRRDRYQSTLYVMDLESGRETPIYDALDRDMQETWAIHGVYPGFAWTPDNGSIVI--WAG 322 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRF-------------------SSNGKRALI 274 I R+ + + P R+ + R + RF S +G + + Sbjct: 323 GKIRRIDVASKAVSEVPFRVTDTRRVQETARFPVDVAPAQFDVKMIRWAQTSPDGSKVVF 382 Query: 275 SVQKDEAMDIYSVDLQSN---ATERLTN-TLFINISASYSPDSSQIVFESDREGK-EQLY 329 +++ DL++ RLT + + S+S D IV+ + + + Sbjct: 383 EA----LGNLWVRDLRNGVAGTPRRLTRQSDHFELYPSWSRDGRSIVYTTWNDENLGSIR 438 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA---------IGVMKKDG 380 V+ G + + I+ + Y +P +SP G + + S + + G Sbjct: 439 VVPVAGGEGRTITTN-PGHYLEPRFSPDGQTVVYRTSSDGYLRSAMWSREPGVYRVSVRG 497 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + + P + + F +DGD L S++L+G +E Sbjct: 498 GEPVKVTDSGAN--PQFGARNDRI-FLADRDGDK-RVLKSVNLSGEDER 542 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSL 404 E ++ SP G I F I VM G + R + + P +SP GR + Sbjct: 52 EGTWMALDVSPDGREIIFDLLGD----IYVMPIGGGEARPIASGVAWDMQPRYSPDGRFI 107 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAY--ASDPQWVG 444 F+ + G G L+ +D +G N +++ + + P W Sbjct: 108 AFTSDRAG--GDNLWVMDRDGSNPRQVSSETFRLLNSPAWTP 147 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 63/273 (23%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + + + S+ V+ G R +T + EPRFSP+ Q V Y Sbjct: 424 IVYTTWNDENLGSIRVVPVAGGEGRTITTNPGHY-LEPRFSPDGQTVVYR---------- 472 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + + + +S +Y V ++ ++T+ Sbjct: 473 --------------TSSDGYLRSAMWS-------------REPGVYRVSVRGGEPVKVTD 505 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYV-MQSNGSDQKRISQDKEASYFDPVWSPQG 358 + + + +I F +DR+G +++ + +G D++ + + SP Sbjct: 506 SGAN---PQFGARNDRI-FLADRDGDKRVLKSVNLSGEDER--THLSSEWAAEFSISPDE 559 Query: 359 DLIAFTKF----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 IA+T+ +G +G K Q R+ + WS L +S Sbjct: 560 RWIAWTERFNAYVAPFVPTGRPMTVGADAKALPQTRVTRDAGEWLH--WSGDSSRLQWS- 616 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 G +L+S L+ + PA P Sbjct: 617 -----MGPELFSRPLSESFAFMDGAPADLPKPA 644 >gi|305667382|ref|YP_003863669.1| hypothetical protein FB2170_14083 [Maribacter sp. HTCC2170] gi|88709430|gb|EAR01663.1| hypothetical protein FB2170_14083 [Maribacter sp. HTCC2170] Length = 1098 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 25/198 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +GK + + D IYS+ + + L + I +SP+ +I F SD G Sbjct: 59 VSPDGKTIVFDLLGD----IYSIPITGGNAKILRTGIPFEIQPRFSPNGKKIAFTSDAGG 114 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FTKFSG-EKFAIGVMKKD 379 + ++ M +GSD K+I+++K + W P G+ FT + Sbjct: 115 GDNIWTMNIDGSDAKQITKEKFRLLNNVSWMPDGNYFVARKHFTSQRSLGAGELWQYHIS 174 Query: 380 GSQERLLV----EDSNLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSIDL---- 423 G L + ++ P SP G+ + +S + D ++Y I Sbjct: 175 GGSGLQLTKRKNDQQDVNEPNISPDGKYMYYSEDVYPGGYFQYNKDPNKQIYVIKRYDFE 234 Query: 424 NGRNETLINTPAYASDPQ 441 G+ + P A+ PQ Sbjct: 235 TGKTIIVTGGPGGAARPQ 252 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 106/275 (38%), Gaps = 56/275 (20%) Query: 216 EPRFS--PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF-------- 265 P FS PN + + + ++ I +V + + P + + F Sbjct: 303 YPSFSWLPNDKGIVF--WNKGKIHKVDINTLVVTNIPFTVDAKIKIAETVHFDSPVAPEE 360 Query: 266 -----------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 S + K + S +++ L + +RLT + + S+S D Sbjct: 361 FSAKVIRHAVTSPDKKTLVFSA----LGHLWTKRLPNGKPKRLTKSENLEFEPSFSADGK 416 Query: 315 QIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA- 372 ++V+ S + ++ + G +++ K Y P +SP G +I + K SG Sbjct: 417 KLVYVSWNDESLGAIHSIPVTGGTPSKLTTQK-GIYRTPTYSPDGKMIVYGKESGNNDQG 475 Query: 373 --------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGDTGSKLYSID 422 + M +G+ + + ++ + P ++ +G+ + + G+ L+SID Sbjct: 476 RTFSKKSGLYTMSANGTNPKWISKEG--EYPQFTANGKRIFYRTGGTYFGNLTKTLHSID 533 Query: 423 LNGRNET----------LINTPAYASDPQWVGFMD 447 LNG+++ L+ +P D +WV F + Sbjct: 534 LNGKDKRNHIKSKYANLLVPSP----DNKWVAFTN 564 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 109/297 (36%), Gaps = 40/297 (13%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 + I ++G + + + + + + + G N + + + +PRF Sbjct: 41 NYIEHQFKTDEGTWMNLDVSPDGKTIVFDLLGDIYSIPITGGNAK-ILRTGIPFEIQPRF 99 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----IS 275 SPN +K+A+ + D ++ M+ A + ++ + +G + + Sbjct: 100 SPNGKKIAFTS-DAGGGDNIWTMNIDGSDAKQITKEKFRLLNNVSWMPDGNYFVARKHFT 158 Query: 276 VQKD-EAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQI----------VFESD 321 Q+ A +++ + + +LT N + SPD + F+ + Sbjct: 159 SQRSLGAGELWQYHISGGSGLQLTKRKNDQQDVNEPNISPDGKYMYYSEDVYPGGYFQYN 218 Query: 322 REGKEQLYVMQSNG--SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 ++ +Q+YV++ + + I P S G +AF K K + + + Sbjct: 219 KDPNKQIYVIKRYDFETGKTIIVTGGPGGAARPQVSRDGKKLAFIKRVRTKTVLFIHDLE 278 Query: 380 GSQERLLVED------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +E +++ + +W P+ + ++F K K++ +D+N Sbjct: 279 TGEEWPVIDSLNKDQQEAWAIFGVYPSFSWLPNDKGIVFWNK------GKIHKVDIN 329 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 102/326 (31%), Gaps = 60/326 (18%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQ 224 + F +R F S+ + L G + LT ++ Q + EP SP+ + Sbjct: 145 MPDGNYFVARKHFTSQRSLGAG---ELWQYHISGGSGLQLTKRKNDQQDVNEPNISPDGK 201 Query: 225 KVAYATYDDEDILRVYLMDTR-----------IDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + Y+ Y D + P+ S +GK+ Sbjct: 202 YMYYSEDVYPGGYFQYNKDPNKQIYVIKRYDFETGKTIIVTGGPGGAARPQVSRDGKKLA 261 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTL-----------FINISASYSPDSSQIVFESDR 322 + ++ DL++ + ++L + S S+ P+ IVF + Sbjct: 262 FIKRVRTKTVLFIHDLETGEEWPVIDSLNKDQQEAWAIFGVYPSFSWLPNDKGIVFWN-- 319 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEA----------------------SYFDPVWSPQGDL 360 K +++ + N I +A V SP Sbjct: 320 --KGKIHKVDINTLVVTNIPFTVDAKIKIAETVHFDSPVAPEEFSAKVIRHAVTSPDKKT 377 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLY 419 + F+ + + + + L + NL+ P++S G+ L++ D G+ ++ Sbjct: 378 LVFSALG----HLWTKRLPNGKPKRLTKSENLEFEPSFSADGKKLVYVSWNDESLGA-IH 432 Query: 420 SIDLNGRNE-TLINTPAYASDPQWVG 444 SI + G L P + Sbjct: 433 SIPVTGGTPSKLTTQKGIYRTPTYSP 458 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-YDDE 234 ++++VS + ++ + G LT + I P +SP+ + + Y + Sbjct: 417 KLVYVS---WNDESLGAIHSIPVTGGTPSKLTTQK-GIYRTPTYSPDGKMIVYGKESGNN 472 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILA---PRFSSNGKRALI----SVQKDEAMDIYSV 287 D R + + + N + + P+F++NGKR + + ++S+ Sbjct: 473 DQGRTFSKKSGLYTMSANGTNPKWISKEGEYPQFTANGKRIFYRTGGTYFGNLTKTLHSI 532 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG--------SDQK 339 DL + + N+ SPD+ + F + K + + NG S Sbjct: 533 DLNGKDKRNHIKSKYANL-LVPSPDNKWVAFTNLH--KAFIAPLNLNGKTVDLDNNSKSV 589 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK----KDGSQERLLVEDS 390 +SQ + + + WS I F E F+ + GS E++ DS Sbjct: 590 PVSQIAKDAGINLHWSKDSKTI-FWTLGDEYFSNNIKDRYTFLPGSPEKVTAMDS 643 >gi|86158652|ref|YP_465437.1| hypothetical protein Adeh_2230 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775163|gb|ABC82000.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 1042 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 116/345 (33%), Gaps = 71/345 (20%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 + IT +G + + ++ L + R G R LT + P FS Sbjct: 33 AAVRDITVHEGTNVAVTASPDGRDLVMDLQGVLWSLPRGGGEARRLTDGLLEPA-RPDFS 91 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-- 278 P +VA+ Y ++ M +++ + PRFS +G R S + Sbjct: 92 PRGDRVAFQAY-AGGTFHIWTMRPD-GTDVRQLTSGHGDDREPRFSPDGTRIAFSSDRAF 149 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-LYVMQSNGSD 337 + + D++ VD+ S A R T +++PD +I F S + + S G+ Sbjct: 150 EGSYDVWVVDVASGALTRWTEAPADEFEPAWTPDGGEIAFVSGAGSTGTAIEAVDSTGAR 209 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA------------------------- 372 + + A P SP G +A+ +F+ + Sbjct: 210 RTLATAPAGARLNSPSISPDGAHLAWIQFAANRSRLVVDGAPASPFEDVFPFPAHWLSAR 269 Query: 373 ---------IGVMKKD-GSQERLLVE-DSNLQAPTW-----------------------S 398 I V D G+ E++ + L P W S Sbjct: 270 TLLYSADGGIRVTDLDAGTSEQVAFQATFRLVRPAWDRKRFDFDRTAPRQALGIVAPALS 329 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 P G ++F ++L+ +D+ G L + P YA DP W Sbjct: 330 PDGTRVVF------QALNRLWLMDVGGAPRPLTDGPYYAQDPAWS 368 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 39/251 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P SP+ +V + + L + AP+ + + P +S +G R Sbjct: 323 IVAPALSPDGTRVVFQALNR-------LWLMDVGGAPRPLTDGPYYAQDPAWSRDGTRIA 375 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + K D+Y +D+ + A +R+T+ ++ ++SPD ++ F+ D+ G V+ Sbjct: 376 YASDKAGTADLYVLDVATGAEQRVTSLPGAEVAPAWSPDGGRLAFQ-DQAGATH--VLDL 432 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERL- 385 ++I A P WS G +A +F I + + R Sbjct: 433 ASGAVRQIVAPLFAP-GRPTWSADGRTVALAALKPYTRRFREGTSQILTVDVESGATRYQ 491 Query: 386 ------LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN------GRNETLINT 433 + P WSP G +L F S L+ + ++ G + + Sbjct: 492 EAAPFESLSTRGDDGPVWSPDGTALAFV------MQSTLWVMPVDAAGRAAGSPVRITSE 545 Query: 434 PAYASDPQWVG 444 P A P W G Sbjct: 546 PTDA--PTWSG 554 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 31/237 (13%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L +MD GA +P +S + ++AYA+ D +Y++D Sbjct: 341 NRLWLMDVGGA--PRPLTDGPYYAQDPAWSRDGTRIAYAS-DKAGTADLYVLDVATGAE- 396 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ + +AP +S +G R +D+A + +DL S A ++ LF ++S Sbjct: 397 QRVTSLPGAEVAPAWSPDGGRLAF---QDQAGATHVLDLASGAVRQIVAPLFAPGRPTWS 453 Query: 311 PDSSQIVFES-------DREGKEQLYVMQSNGSDQK-----RISQDKEASYFDPVWSPQG 358 D + + REG Q+ + + PVWSP G Sbjct: 454 ADGRTVALAALKPYTRRFREGTSQILTVDVESGATRYQEAAPFESLSTRGDDGPVWSPDG 513 Query: 359 DLIAFTKFSGEKFAIGVMKKD------GSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +AF S + VM D GS R+ E ++ APTWS R L++ Sbjct: 514 TALAFVMQS----TLWVMPVDAAGRAAGSPVRITSEPTD--APTWSGDSRRLLYLSS 564 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 55/350 (15%), Positives = 105/350 (30%), Gaps = 71/350 (20%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A ++D + + + R+ F + + + + M DG ++R LT Sbjct: 75 ARRLTDGLLEPARPDFSPRGDRVAFQAYAGGT----FHIWTMRPDGTDVRQLTSGHGD-D 129 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EPRFSP+ ++A+++ + + A R + P ++ +G Sbjct: 130 REPRFSPDGTRIAFSSDRAFEGSYDVWVVDVASGALTRWTEAPADEFEPAWTPDGGEIAF 189 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINI--SASYSPDSSQIV---FESDR-----EG 324 + A L S S SPD + + F ++R +G Sbjct: 190 VSGAGSTGTAIEAVDSTGARRTLATAPAGARLNSPSISPDGAHLAWIQFAANRSRLVVDG 249 Query: 325 KE--------------------------QLYVMQSNGSDQKRISQDKEASYFDPVW---- 354 + V + ++++ P W Sbjct: 250 APASPFEDVFPFPAHWLSARTLLYSADGGIRVTDLDAGTSEQVAFQATFRLVRPAWDRKR 309 Query: 355 -------------------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 SP G + F + + +M G+ L Q P Sbjct: 310 FDFDRTAPRQALGIVAPALSPDGTRVVFQALN----RLWLMDVGGAPRPLTDGPYYAQDP 365 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 WS G + ++ K G + LY +D+ G + + + P P W Sbjct: 366 AWSRDGTRIAYASDKAGT--ADLYVLDVATGAEQRVTSLPGAEVAPAWSP 413 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 7/154 (4%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 A +T N++ + SPD +V + + L+ + G + +R++ D P Sbjct: 34 AVRDITVHEGTNVAVTASPDGRDLV----MDLQGVLWSLPRGGGEARRLT-DGLLEPARP 88 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 +SP+GD +AF ++G F I M+ DG+ R L + + P +SP G + FS + Sbjct: 89 DFSPRGDRVAFQAYAGGTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDRA 148 Query: 412 GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + ++ +D+ +G PA +P W Sbjct: 149 FEGSYDVWVVDVASGALTRWTEAPADEFEPAWTP 182 >gi|219847846|ref|YP_002462279.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542105|gb|ACL23843.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM 9485] Length = 629 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 120/332 (36%), Gaps = 53/332 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL--FEPRFS 220 Y + + + S + L + +G R + + + + ++ Sbjct: 297 YPHLGTPWAAPDPVAPLIYASNIDTGSYWELYRANFNGGGQRITFNNNETVAYSWLRSWN 356 Query: 221 PNQQKVAYATYDDEDILR-VYLMDTRIDRAPKR----------------IGNFRS----- 258 PN+Q +A + ++ + R VYL+++ ++ + + Sbjct: 357 PNRQMLAVDSRREQPVYRQVYLLNSVAASDGEQASAATATRISSVDMRDLWYYPGGPDEL 416 Query: 259 -----MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA----TERLTNT-LFINIS-A 307 P S +G R L+ ++ + D+ + RLT + Sbjct: 417 ISKTVNEFNPMVSPDGTRLLVISERVDRPDLMLWSIADTNSLTIPSRLTRDQPACHYETP 476 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNG----------------SDQKRISQDKEASYFD 351 ++SPD +I + SD +G +Y + + S+ +++S ++ A+ Sbjct: 477 AWSPDGRRIYWVSDCDGYFAIYSAEPSYRPYSLRNNLVGFIAELSNIRKLS-NQNANDRF 535 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF + I VM DGS R L + APTWSP GR L F+ + Sbjct: 536 ARVSPDGKQIAFASDRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDR 595 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 DGD + ++ + + A P W Sbjct: 596 DGDFEIYILNVSDGTITQQVTQNTAQDRWPLW 627 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 217 PRFSPNQQKVAYAT--------YDDEDILRVYLMDTRIDRAP------KRIGNFRSMILA 262 P +SP+ +++ + + Y E R Y + + +++ N + Sbjct: 476 PAWSPDGRRIYWVSDCDGYFAIYSAEPSYRPYSLRNNLVGFIAELSNIRKLSNQNANDRF 535 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 R S +GK+ + +D +IY ++ + RLTN + + ++SPD Q+ F SDR Sbjct: 536 ARVSPDGKQIAFASDRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDR 595 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +G ++Y++ + + A P+W+ Sbjct: 596 DGDFEIYILNVSDGTITQQVTQNTAQDRWPLWT 628 >gi|116625575|ref|YP_827731.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116228737|gb|ABJ87446.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 652 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 38/223 (17%) Query: 259 MILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + S +G+ +VQ+ D I+ + +LT+ + +SPD Sbjct: 32 SVAGAQISPDGRYVAYTVQQANWDENDFISQIWIAVTATGERYQLTSGKKSSTGPQWSPD 91 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---- 368 S ++ F SDR+GK Q+Y++ NG + ++ ++ WSP G IAFT Sbjct: 92 SHRLAFTSDRDGKRQIYLISPNGGEAIALTSEENG-VSAIAWSPDGASIAFTSSGPDAKP 150 Query: 369 --------EKFAI----------GVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIF 406 +F I ++K ++ + S + A +WSP G+ + F Sbjct: 151 RKDRKEKYGEFEIIEHDYTMSHLWLIKVADNKPKATALTSGDKFSVGAFSWSPDGKRIAF 210 Query: 407 SRKKDGDTGSK----LYSIDL-NGRNETLINTPAYASDPQWVG 444 + +D D GS+ +Y +DL + + L+++P S+P+W Sbjct: 211 AAGRDPDLGSQDTESIYVLDLADLHVKKLLDSPGPHSNPKWSP 253 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 93/261 (35%), Gaps = 40/261 (15%) Query: 219 FSPNQQKVAYAT----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 SP+ + VAY +D+ D + + ++ + + P++S + R Sbjct: 38 ISPDGRYVAYTVQQANWDENDFISQIWIAVTATGERYQLTSGKKSSTGPQWSPDSHRLAF 97 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---------DREGK 325 + +D IY + LT+ + ++SPD + I F S DR+ K Sbjct: 98 TSDRDGKRQIYLISPNGGEAIALTSEENGVSAIAWSPDGASIAFTSSGPDAKPRKDRKEK 157 Query: 326 E-------------QLYVMQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 L++++ + K ++ + S WSP G IAF Sbjct: 158 YGEFEIIEHDYTMSHLWLIKVADNKPKATALTSGDKFSVGAFSWSPDGKRIAFAAGRDPD 217 Query: 371 F------AIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD----TGSKLY 419 +I V+ D ++LL P WSP+GR + F+ + Sbjct: 218 LGSQDTESIYVLDLADLHVKKLLDSPGPHSNPKWSPNGREIAFTTSNSVPNFFYANRYIA 277 Query: 420 SIDLNGRNETLINTPAYASDP 440 I +G L+ T + DP Sbjct: 278 VIPADGGQPRLL-TKDFDEDP 297 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 105/272 (38%), Gaps = 48/272 (17%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 RY S + P++SP+ ++A+ + D ++YL+ A + + + + A Sbjct: 72 ERYQLTSGKKSSTGPQWSPDSHRLAFTSDRDGK-RQIYLISPNGGEAIA-LTSEENGVSA 129 Query: 263 PRFSSNGKRALISVQKDEA----------------------MDIYSVDLQSNAT--ERLT 298 +S +G + +A ++ + + N LT Sbjct: 130 IAWSPDGASIAFTSSGPDAKPRKDRKEKYGEFEIIEHDYTMSHLWLIKVADNKPKATALT 189 Query: 299 NTLFINISA-SYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQDKEASYFD 351 + ++ A S+SPD +I F + R+ E +YV+ K++ D + + Sbjct: 190 SGDKFSVGAFSWSPDGKRIAFAAGRDPDLGSQDTESIYVLDLADLHVKKLL-DSPGPHSN 248 Query: 352 PVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPT---WSPSGR 402 P WSP G IAFT + I V+ DG Q RLL +D + + P W+ G Sbjct: 249 PKWSPNGREIAFTTSNSVPNFFYANRYIAVIPADGGQPRLLTKDFD-EDPNLLEWADDG- 306 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + F + T + + ID R I P Sbjct: 307 -IYFGASQ--KTAAHTFRIDPATRAIRRITGP 335 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 16/196 (8%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRIDRAPKRIGNFRSMI 260 LT + +SP+ +++A+A D D +Y++D D K++ + Sbjct: 188 LTSGDKFSVGAFSWSPDGKRIAFAAGRDPDLGSQDTESIYVLDL-ADLHVKKLLDSPGPH 246 Query: 261 LAPRFSSNGKRALISVQKD------EAMDIYSVDLQSNATERLTNTLFINISA-SYSPDS 313 P++S NG+ + I + LT + + ++ D Sbjct: 247 SNPKWSPNGREIAFTTSNSVPNFFYANRYIAVIPADGGQPRLLTKDFDEDPNLLEWADDG 306 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-A 372 I F + ++ + + +RI+ ++ A S +F Sbjct: 307 --IYFGASQKTAAHTFRIDPATRAIRRITGPDAFHATGGSFTRDHRTFAGVGASPNRFPE 364 Query: 373 IGVMKKDGSQERLLVE 388 I V + L + Sbjct: 365 IFVSSVSDFAPKYLTD 380 >gi|54294320|ref|YP_126735.1| hypothetical protein lpl1385 [Legionella pneumophila str. Lens] gi|53754152|emb|CAH15625.1| hypothetical protein lpl1385 [Legionella pneumophila str. Lens] Length = 656 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 113/306 (36%), Gaps = 58/306 (18%) Query: 195 VMDRDGANIRYLTP----SRDQILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTR 245 V+ DG + L R Q + EP SP+ + VAY V+ + Sbjct: 13 VVFHDGWAGKRLPELDDLYRIQNISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVD 72 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S P++S NGK K+ I+ +Q N +LT Sbjct: 73 SKSSQQITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTYIDGE 132 Query: 304 NISASYSPDSSQIVFE---SDRE------------------------GKEQLYVMQSNGS 336 ++SPDS++I F SD G++ LY+++ Sbjct: 133 VSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSK 192 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLVE- 388 +++ D + P WSP G IAF G+ + I +++ G++ER L Sbjct: 193 AITQLT-DGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHF 251 Query: 389 DSNLQAP------TWSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLI-NTPAYA 437 + P +WSP + + R + ++L ID+N ++E +I + Sbjct: 252 PGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDERIIAPRDNWY 311 Query: 438 SDPQWV 443 P+W Sbjct: 312 YKPKWS 317 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 107/304 (35%), Gaps = 49/304 (16%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + I + + D + + +T + D P++SPN + +AY + ++ + Sbjct: 56 NAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWI 115 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD----------------------- 279 + D ++ + +S + R QK Sbjct: 116 ASVQDNKEHQLTYIDGEVSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVG 175 Query: 280 ----EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------DREGKEQLY 329 +Y V+L+S A +LT+ ++SPD I F + DR +Y Sbjct: 176 YLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIY 235 Query: 330 VMQSNGSDQKRISQDKEASYFDP------VWSPQGDLIAFTKFSGEKF------AIGVMK 377 +++ ++R S +P WSP IA+ + + ++ + ++ Sbjct: 236 LIEPKSGAKERQLTHFPGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIID 295 Query: 378 KDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA 435 + ER++ N P WS G+ + + + L ID+ +G+ + L Sbjct: 296 INTKDERIIAPRDNWYYKPKWSQDGKFIY--ALIEESRNTYLNRIDIHSGQVKKLTGGLR 353 Query: 436 YASD 439 Y D Sbjct: 354 YDMD 357 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 95/258 (36%), Gaps = 51/258 (19%) Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALISVQKDEAMD------IYSVDL 289 L V+ R P+ +R ++ P S +GK +V + A D ++ V + Sbjct: 12 LVVFHDGWAGKRLPELDDLYRIQNISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSV 71 Query: 290 QSNATERLTNTLFINIS-ASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKE 346 S +++++T + S +SP+ + + SD +EG Q+++ + + +++ + Sbjct: 72 DSKSSQQITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTYI-D 130 Query: 347 ASYFDPVWSPQGDLIAFTKF---------------------------SGEKFAIGVMKKD 379 D WSP + IAF + + +++ Sbjct: 131 GEVSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELK 190 Query: 380 GSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGD----TGSKLYSIDL-NGRNETLINT 433 L + ++ + P WSP G+ + F K+ D +Y I+ +G E + Sbjct: 191 SKAITQLTDGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTH 250 Query: 434 -PAYASDP------QWVG 444 P +P W Sbjct: 251 FPGSDMNPDYDSNLSWSP 268 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 41/182 (22%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD + + D +++ + + ++I+ +++S P WSP G Sbjct: 38 EPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWSPNGK 97 Query: 360 LIAFTKFSG--EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD----- 411 +A+ G I + ++E L D + TWSP + F +K Sbjct: 98 WLAYLSDGGKEGTTQIWIASVQDNKEHQLTYIDGEVSDFTWSPDSNRIAFIAQKSDPSNE 157 Query: 412 --------------------GDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVG 444 G LY ++L + T + PA++ D +++ Sbjct: 158 EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIA 217 Query: 445 FM 446 F+ Sbjct: 218 FV 219 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 32/68 (47%), Gaps = 12/68 (17%) Query: 391 NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN--------TPAYAS 438 N+ P SP G+ + ++ + D + ++++ + ++ ++ I P ++ Sbjct: 35 NISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWSP 94 Query: 439 DPQWVGFM 446 + +W+ ++ Sbjct: 95 NGKWLAYL 102 >gi|225874499|ref|YP_002755958.1| peptidase, S41B (tricorn core protease) family [Acidobacterium capsulatum ATCC 51196] gi|225793616|gb|ACO33706.1| peptidase, S41B (tricorn core protease) family [Acidobacterium capsulatum ATCC 51196] Length = 1099 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 28/250 (11%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 L +P SP+ Q++A+A+ D ++ + + A I N + P +S +G + Sbjct: 56 PSLTQPALSPDGQEIAFASGGD-----IWTVPAKGGDAHLLISN-PATESRPLYSPDGSK 109 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---SDREGKEQL 328 + DIY + L + +R+T + ++S D I F SD + + Sbjct: 110 IAFISTRTGGGDIYVLTLATGQLQRITYGDTLEQLDAWSADGKWIYFTNGASDIDYNTDV 169 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--------FSGEKFAI------G 374 Y + + G +S + + F+ SP G + + I Sbjct: 170 YRVSAEGGTPMPVSAESYLAEFESAPSPDGKSVVMMAKGISDQQWWRDGHAHIDDTELWW 229 Query: 375 VMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN- 432 G R+LV +D+ P WS SG+++ + K G L+S+ NG E + Sbjct: 230 KSLAPGGAYRVLVPDDAKHAWPMWSASGKTIYYMSDKTGP--ENLWSVSSNGGAEKQLTH 287 Query: 433 -TPAYASDPQ 441 T P Sbjct: 288 FTNGRVLWPS 297 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 14/211 (6%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +K+A + D VY+ + RI M + +S + + + + Sbjct: 351 ALSPDGKKLAVIAHGD-----VYVTTEKDGGEAIRITRTPQMEASLHWSPDSTKLIYTSM 405 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D DIY + + +LT+ ++PD I + DR +Q++++ Sbjct: 406 RDGNSDIYEYNFDGSKETQLTHGTAQCEHPRWNPDGKAIAYIRDR---KQVHLLTLASGK 462 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLV---EDSNLQ 393 + ++ DK S D +SP GD +A+T + + F I V+ G R + Sbjct: 463 DEVLATDKMWSP-DLEFSPAGDWLAYTIYGYDGFRNIKVVPTKGGAARSITFLANGETAD 521 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 WSP G+ L+F+ + + + +DL Sbjct: 522 QMAWSPDGKYLLFATAQRSE-NFDMARVDLT 551 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 27/208 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + + P S +G+ + DI++V + L + YSPD S+I Sbjct: 55 KPSLTQPALSPDGQEIAFAS----GGDIWTVPAKGGDAHLLISNPATESRPLYSPDGSKI 110 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---KFAI 373 F S R G +YV+ +RI+ + WS G I FT + + + Sbjct: 111 AFISTRTGGGDIYVLTLATGQLQRITY-GDTLEQLDAWSADGKWIYFTNGASDIDYNTDV 169 Query: 374 GVMKKDGSQERLLVEDSN----LQAPTWSPSGRSLIFSRK--------KDGDT---GSKL 418 + +G + +S AP SP G+S++ K +DG ++L Sbjct: 170 YRVSAEGGTPMPVSAESYLAEFESAP--SPDGKSVVMMAKGISDQQWWRDGHAHIDDTEL 227 Query: 419 YSIDL--NGRNETLINTPAYASDPQWVG 444 + L G L+ A + P W Sbjct: 228 WWKSLAPGGAYRVLVPDDAKHAWPMWSA 255 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 103/302 (34%), Gaps = 37/302 (12%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 + + ++ + + + +G ++ FE SP+ + V Sbjct: 147 WSADGKWIYFTNGASDIDYNTDVYRVSAEGGTPMPVSAESYLAEFESAPSPDGKSVVMMA 206 Query: 231 YDDEDIL------------RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 D ++ A + + + P +S++GK K Sbjct: 207 KGISDQQWWRDGHAHIDDTELWWKSLAPGGAYRVLVPDDAKHAWPMWSASGKTIYYMSDK 266 Query: 279 DEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +++SV A ++LT+ T + S IVFE + ++ M + Sbjct: 267 TGPENLWSVSSNGGAEKQLTHFTNGRVLWPSIGDHGKTIVFERELT----IWKMNTATGK 322 Query: 338 QKRISQDKEAS-------------YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 +++ + S + + SP G +A G+ + +KDG + Sbjct: 323 AEQVPVELRGSPSGLGVEHEAVSHFSEMALSPDGKKLAVIAH-GDVYV--TTEKDGGEAI 379 Query: 385 LLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQW 442 + ++A WSP LI++ +DG S +Y + +G ET + A P+W Sbjct: 380 RITRTPQMEASLHWSPDSTKLIYTSMRDG--NSDIYEYNFDGSKETQLTHGTAQCEHPRW 437 Query: 443 VG 444 Sbjct: 438 NP 439 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 29/260 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G + L S P +SP+ K+A+ + +Y++ + + Sbjct: 77 DIWTVPAKGGDAH-LLISNPATESRPLYSPDGSKIAFISTRTGGG-DIYVLTLATGQL-Q 133 Query: 252 RIGNFRSMILAPRFSSNGKRALIS---VQKDEAMDIYSVDLQSNATERLTNTLFI-NISA 307 RI ++ +S++GK + D D+Y V + ++ ++ + Sbjct: 134 RITYGDTLEQLDAWSADGKWIYFTNGASDIDYNTDVYRVSAEGGTPMPVSAESYLAEFES 193 Query: 308 SYSPDSSQIVF----ESD----REGKEQL-----YVMQSNGSDQKRISQDKEASYFDPVW 354 + SPD +V SD R+G + + R+ +A + P+W Sbjct: 194 APSPDGKSVVMMAKGISDQQWWRDGHAHIDDTELWWKSLAPGGAYRVLVPDDAKHAWPMW 253 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDG 412 S G I + + + +G E+ L + + P+ G++++F R+ Sbjct: 254 SASGKTIYYMSDKTGPENLWSVSSNGGAEKQLTHFTNGRVLWPSIGDHGKTIVFERE--- 310 Query: 413 DTGSKLYSID-LNGRNETLI 431 ++ ++ G+ E + Sbjct: 311 ---LTIWKMNTATGKAEQVP 327 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 98/290 (33%), Gaps = 35/290 (12%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++++++ S + + + + DG+ LT Q PR++P+ + +AY Sbjct: 397 STKLIYTSMRDGN----SDIYEYNFDGSKETQLTHGTAQ-CEHPRWNPDGKAIAYI---- 447 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSN 292 D +V+L+ + + + + FS G ++ D +I V + Sbjct: 448 RDRKQVHLLTLASGKD-EVLATDKMWSPDLEFSPAGDWLAYTIYGYDGFRNIKVVPTKGG 506 Query: 293 ATERLTNTLFINI--SASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 A +T ++SPD ++F + R + + + +++ Sbjct: 507 AARSITFLANGETADQMAWSPDGKYLLFATAQRSENFDMARVDL-TLHVPQYQENQFYDL 565 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIG----------------VMKKDGSQERLLVEDSNLQ 393 F P+ + K A V + LL + Sbjct: 566 FKSPTEPKNPKSPAESTTSGKDAAAKTKDKKPASKAKPVNIVFDGIRDRLSLLPLGLSAT 625 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN----ETLINTPAYASD 439 P SP G++LIF + G+ +S+ N + L + S+ Sbjct: 626 QPVISPDGKTLIFQAEVAGEDNLYSWSLKENPKTPPVARQLTASHGDKSN 675 Score = 70.0 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 14/108 (12%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIF 406 S P SP G IAF I + G LL+ + ++ P +SP G + F Sbjct: 57 SLTQPALSPDGQEIAFASGGD----IWTVPAKGGDAHLLISNPATESRPLYSPDGSKIAF 112 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTP-------AYASDPQWVGFMD 447 + G G +Y + L I A+++D +W+ F + Sbjct: 113 ISTRTG--GGDIYVLTLATGQLQRITYGDTLEQLDAWSADGKWIYFTN 158 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 34/243 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRID--RAPKRIGNFRSMILAPRFSSNGKRALI-S 275 FSP +AY Y + + ++ T+ R+ + N + +S +GK L + Sbjct: 478 FSPAGDWLAYTIYGYDGFRNIKVVPTKGGAARSITFLANGETADQM-AWSPDGKYLLFAT 536 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINI--SASYSPDSSQIVFESDREGKEQLYVM-- 331 Q+ E D+ VDL + + F ++ S + + ES GK+ Sbjct: 537 AQRSENFDMARVDL-TLHVPQYQENQFYDLFKSPTEPKNPKSPA-ESTTSGKDAAAKTKD 594 Query: 332 --QSNGSDQKRISQDK----------EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 ++ + I D S PV SP G + F + + Sbjct: 595 KKPASKAKPVNIVFDGIRDRLSLLPLGLSATQPVISPDGKTLIFQAEVAGEDNLYSWSLK 654 Query: 380 GSQ-----ERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + R L + + P ++++F + + ++G + T I Sbjct: 655 ENPKTPPVARQLTASHGDKSNVQFMPDSKTIVFLEN------GHVMKLAVDGGHATPIPV 708 Query: 434 PAY 436 A Sbjct: 709 TAD 711 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 20/167 (11%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALISVQKD 279 + + A T D + + ++ D R+ + A P S +GK + + Sbjct: 584 SGKDAAAKTKDKKPASKAKPVNIVFDGIRDRLSLLPLGLSATQPVISPDGKTLIFQAEVA 643 Query: 280 EAMDIYSVDLQSNA-----TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++YS L+ N +LT + + + PDS IVF + + + Sbjct: 644 GEDNLYSWSLKENPKTPPVARQLTASHGDKSNVQFMPDSKTIVFL----ENGHVMKLAVD 699 Query: 335 GSDQKRISQDKEAS---------YFDPVWSPQGDLIAFTKFSGEKFA 372 G I + + F+ WS +G+ + Sbjct: 700 GGHATPIPVTADYTVNFNVEKNVVFNEAWSDLERRYYNPSMNGQNWK 746 Score = 36.5 bits (83), Expect = 8.6, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 12/164 (7%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDDEDILRVYLMDTRIDRAP--KRIG 254 DG R +P SP+ + + + A ED L + + P +++ Sbjct: 608 FDGIRDRLSLLPLGLSATQPVISPDGKTLIFQAEVAGEDNLYSWSLKENPKTPPVARQLT 667 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +F + K + E + + + + T ++ + Sbjct: 668 ASHGDKSNVQFMPDSKTIVF----LENGHVMKLAVDGGHATPIPVTADYTVNFNV---EK 720 Query: 315 QIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 +VF + + + + Y NG + K I + A + V +P Sbjct: 721 NVVFNEAWSDLERRYYNPSMNGQNWKAI-HAEFAPFIAGVATPD 763 >gi|148554693|ref|YP_001262275.1| amidohydrolase [Sphingomonas wittichii RW1] gi|148499883|gb|ABQ68137.1| amidohydrolase [Sphingomonas wittichii RW1] Length = 1010 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 84/239 (35%), Gaps = 12/239 (5%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R+ F SP+ ++A D + LR+ + Sbjct: 32 PSRTFTVREGTNFTAAMSPDATRIA---IDLQGELRIL---PAKGGKAVVVPGLSGESRL 85 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +S +GK I++V + +L+ + +S D I+F SDR Sbjct: 86 PSWSPDGKLIAFQYYLGGYWHIFTVKPDGSDLRQLSFGAADDREPVWSADGRSILFASDR 145 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G ++ + + + ++++ E Y P + G IAF + + + + DG+ Sbjct: 146 AGNFDIWSVGLDRAAPVQLTRAPEDEY-SPAVATDGR-IAFVATAAKGSELRLRSVDGAV 203 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK----LYSIDLNGRNETLINTPAYA 437 + + S + P WS G S+ + G G + L+ D + L + Sbjct: 204 RVVTADPSRIALPAWSGDGSSIAYVAYASGRLGRRGEASLHVADATSGKDRLASAAGED 262 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 138/386 (35%), Gaps = 42/386 (10%) Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLR----VEFRLWDVKD 135 + + + D F W S+G ++ + +D + R+ V Sbjct: 129 EPVWSADGRSILFASDRAGNFDIW-SVGLDRAAPVQLTRAPEDEYSPAVATDGRIAFVAT 187 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII-KNSLC 194 + + S + R + +D ++ GD +S S G + SL Sbjct: 188 AAKGSELRLRSVDGAVRVVT---ADPSRIALPAWSGDGSSIAYVAYASGRLGRRGEASLH 244 Query: 195 VMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED---------ILRVYLMDT 244 V D G + D + P+ P + A + + T Sbjct: 245 VADATSGKDRLASAAGEDVFVARPQSLPRGGWLYTADGVIKRQGTGAAATIPFAADFIVT 304 Query: 245 RIDRAPKRIGNFRSM-------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 ++ +F S IL P S +GK + D ++ + + RL Sbjct: 305 PAPAYARKRHDFTSTAPKPVKGILHPVVSPDGKYVAFTALSD----LWLLKIGDPKPVRL 360 Query: 298 TNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 TN F++I ++SPD S++ + SDR G LYV ++R+++ E S PV+S Sbjct: 361 TNDPFVDIDPAWSPDGSRLAYTSDRRGVGTMDLYVRDMASGREERLTETTE-SVAAPVFS 419 Query: 356 PQGDLIAFTKFSGEKFAIG---VMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS---- 407 P G IA T + + + ++ + R + +WSP G+S+ + Sbjct: 420 PDGKSIALTMLASDDWHANFPNIVDLQTKEIRKIHGWTFKPSVGSWSPDGKSVNYVVLAE 479 Query: 408 -RKKDGDTGSKLYSIDLNGRNETLIN 432 + +++ + ++G + L + Sbjct: 480 KSDRFRHGLNEIMRVPVDGGEQRLTS 505 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 109/316 (34%), Gaps = 39/316 (12%) Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS----ESVVSGIIKNSLC 194 +I ++ + A+ A I + ++ DF S VVS K Sbjct: 283 VIKRQGTGAAATIPFAADFIVTPA-PAYARKRHDFTSTAPKPVKGILHPVVSPDGKYVAF 341 Query: 195 VMDRD------GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 D G + + +P +SP+ ++AY + + Sbjct: 342 TALSDLWLLKIGDPKPVRLTNDPFVDIDPAWSPDGSRLAYTSDRRGVGTMDLYVRDMASG 401 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI---YSVDLQSNATERLTNTLFINI 305 +R+ + AP FS +GK +++ + VDLQ+ ++ F Sbjct: 402 REERLTETTESVAAPVFSPDGKSIALTMLASDDWHANFPNIVDLQTKEIRKIHGWTFKPS 461 Query: 306 SASYSPDSSQIVFE-----SD--REGKEQLYVMQSNGSDQKRISQDKEASYF-----DPV 353 S+SPD + + SD R G ++ + +G +Q+ S S + Sbjct: 462 VGSWSPDGKSVNYVVLAEKSDRFRHGLNEIMRVPVDGGEQRLTSPIPGKSLGIRAKDGAI 521 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDG-----SQERLLVEDSNLQAPTWSPSGRSLIFSR 408 +SP G +AF + + D R + D P+W+ RS+++ Sbjct: 522 YSPDGTHMAFVADG----VLWTVATDRHGDFIDSPRRMTND-LADEPSWAGDSRSIVY-- 574 Query: 409 KKDGDTGSKLYSIDLN 424 + D +++ D + Sbjct: 575 -QSADKLKRIWLDDAH 589 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 23/265 (8%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 ++ T +G + + + ++ ++ L ++ G + P P +SP+ Sbjct: 34 RTFTVREGTNFTAAMSPDATRIAIDLQGELRILPAKGGKA-VVVPGLSGESRLPSWSPDG 92 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + +A+ Y ++ + +++ + P +S++G+ L + + D Sbjct: 93 KLIAF-QYYLGGYWHIFTVKPD-GSDLRQLSFGAADDREPVWSADGRSILFASDRAGNFD 150 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 I+SV L A +LT S + + D +I F + +L + +G R+ Sbjct: 151 IWSVGLDRAAPVQLTRAPEDEYSPAVATDG-RIAFVATAAKGSELRLRSVDG--AVRVVT 207 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQAPTW 397 + P WS G IA+ ++ + ++ V ++RL Sbjct: 208 ADPSRIALPAWSGDGSSIAYVAYASGRLGRRGEASLHVADATSGKDRLA----------- 256 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSID 422 S +G + +R + G LY+ D Sbjct: 257 SAAGEDVFVARPQSLPRGGWLYTAD 281 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 112/326 (34%), Gaps = 50/326 (15%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSR-ILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 + R+++ +DD + R ILF S+ + + + D A LT Sbjct: 115 SDLRQLSFGAADD-----REPVWSADGRSILFASDRAGN----FDIWSVGLDRAAPVQLT 165 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + + + P + + ++A+ + L +D A + + S I P +S Sbjct: 166 RAPED-EYSPAVATDG-RIAFVATAAKGSE---LRLRSVDGAVRVVTADPSRIALPAWSG 220 Query: 268 NGKRALIS------VQKDEAMDIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVF 318 +G + + ++ D S +RL + ++ P + + Sbjct: 221 DGSSIAYVAYASGRLGRRGEASLHVADATSGK-DRLASAAGEDVFVARPQSLPRGGWL-Y 278 Query: 319 ESD----REGKE---------QLYVMQSNGSDQKRISQDKEA-----SYFDPVWSPQGDL 360 +D R+G V + +KR A PV SP G Sbjct: 279 TADGVIKRQGTGAAATIPFAADFIVTPAPAYARKRHDFTSTAPKPVKGILHPVVSPDGKY 338 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLY 419 +AFT S + ++K + L D + P WSP G L ++ + G LY Sbjct: 339 VAFTALSD----LWLLKIGDPKPVRLTNDPFVDIDPAWSPDGSRLAYTSDRRGVGTMDLY 394 Query: 420 SID-LNGRNETLINTPAYASDPQWVG 444 D +GR E L T + P + Sbjct: 395 VRDMASGREERLTETTESVAAPVFSP 420 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPT 396 R +E + F SP IA + ++ G + ++ + P+ Sbjct: 32 PSRTFTVREGTNFTAAMSPDATRIAIDLQG----ELRILPAKGGKAVVVPGLSGESRLPS 87 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVG 444 WSP G+ + F G ++++ +G + ++ A +P W Sbjct: 88 WSPDGKLIAFQYYLGGYW--HIFTVKPDGSDLRQLSFGAADDREPVWSA 134 >gi|116625466|ref|YP_827622.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228628|gb|ABJ87337.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 905 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 18/206 (8%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISA 307 P+R+ + + P S++GK + + + +DI+ + RLT Sbjct: 341 PERLTLDLGLNIDPAISADGKFVAYASDRSGEGNLDIWVKQIGGGEPIRLTRNPADEREP 400 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++SPD + + + S R+G +YV+ G +++R+ + P +SP G IA+ K Sbjct: 401 AFSPDGTSVAYRSVRDGG-GIYVVSMLGGEEQRLISEGRR----PRFSPDGKQIAYWKGL 455 Query: 368 GEKFAI-------GVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 E F + + + SQ R + E + P WSP G+ ++F K+ + Sbjct: 456 EEPFPVRAGSGTAYIFDRTTSQTRQIAPEFAAAVHPVWSPDGKHILFLGIKEDTKTLDWW 515 Query: 420 SIDLNGRNETL--INTPAYASDP-QW 442 + G +N DP +W Sbjct: 516 FVPAAGGTAVRCHVNVSGSLVDPFEW 541 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 20/235 (8%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + +P S + + VAYA+ + + P R+ + P FS +G Sbjct: 349 GLNIDPAISADGKFVAYASDRSGEGNLDIWVKQIGGGEPIRLTRNPADEREPAFSPDGTS 408 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------REG 324 +D IY V + +RL + +SPD QI + R G Sbjct: 409 VAYRSVRDGGG-IYVVSMLGGEEQRL---ISEGRRPRFSPDGKQIAYWKGLEEPFPVRAG 464 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVMKKDGSQ 382 Y+ S ++I+ + A+ PVWSP G I F K + + G Sbjct: 465 SGTAYIFDRTTSQTRQIAPE-FAAAVHPVWSPDGKHILFLGIKEDTKTLDWWFVPAAGGT 523 Query: 383 ER---LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + V S + W I+ G +K+ ++ + P Sbjct: 524 AVRCHVNVSGSLVDPFEWRGD---FIYYETGAGTADAKIGKQQIDPATWQPVGKP 575 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 + + S SG + V G LT + EP FSP+ Sbjct: 350 LNIDPAISADGKFVAYASDRSGEGNLDIWVKQIGGGEPIRLTRNPAD-EREPAFSPDGTS 408 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-------QK 278 VAY + D +Y++ + I R PRFS +GK+ + Sbjct: 409 VAYRSVRDGGG--IYVVSMLGGEEQRLISEGRR----PRFSPDGKQIAYWKGLEEPFPVR 462 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL--YVMQSNGS 336 + Y D ++ T ++ + +SPD I+F +E + L + + + G Sbjct: 463 AGSGTAYIFDRTTSQTRQIAPEFAAAVHPVWSPDGKHILFLGIKEDTKTLDWWFVPAAGG 522 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKD-------GSQERLLVE 388 R + S DP + +GD I + +G IG + D G RL Sbjct: 523 TAVRCHVNVSGSLVDP-FEWRGDFIYYETGAGTADAKIGKQQIDPATWQPVGKPVRLTT- 580 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 +P+ S G + LYS+ LN + P Sbjct: 581 -RADLSPSISLDGHM----AYAGIVRNTNLYSLPLNVNRGKVTGAP 621 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 19/247 (7%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP----KRIGN 255 GA S + I S + ++V Y ++ P I N Sbjct: 619 GAPQGLTRDSGENIAR--SISADGRRVVYTADRAASPGGKATVEVWGRELPGGREHAITN 676 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P S++GK + +I+ + RL +SPD S Sbjct: 677 DGKYKTLPEISADGKLVAWREARASIHEIFVTPFEGGPATRLCGDCG--GQPVWSPDGS- 733 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIG 374 IV L ++ QK ++ + G +AFT +G + I Sbjct: 734 IVLAGQFSTPGALALVDVASVTQKIYMREPGLVLQARAITSDGKWLAFTAGKTGADYTIY 793 Query: 375 VMKKDGSQE-------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 V + D ++ ++L P WSP G L F + DG L++ L+ R+ Sbjct: 794 VARFDAARAPVAAQWIKVLTSSEAHPYPRWSPDGTLLYFGSRLDGFNC--LWAQRLDPRS 851 Query: 428 ETLINTP 434 +T + P Sbjct: 852 KTPVGRP 858 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQ 441 ERL ++ P S G+ + ++ + G+ ++ + G L PA +P Sbjct: 342 ERLTLDLGLNIDPAISADGKFVAYASDRSGEGNLDIWVKQIGGGEPIRLTRNPADEREPA 401 Query: 442 WVG 444 + Sbjct: 402 FSP 404 >gi|111221034|ref|YP_711828.1| putative serine/threonine protein kinase [Frankia alni ACN14a] gi|111148566|emb|CAJ60239.1| Putative serine/threonine protein kinase [Frankia alni ACN14a] Length = 770 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 115/297 (38%), Gaps = 27/297 (9%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG--ANIRYLTPSRDQILFEPRFSPNQQK 225 + R V S +G + DG N + L D P S +++ Sbjct: 476 PRSPEPLGRDTVVYASNRNGNYDLFRGDVTGDGGLQNDKPLLTGPDN-DMLPAISGDRKT 534 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA------PRFSSNGKRALISVQ-- 277 V + + L+ D + + + + L P S +G+ ++ Sbjct: 535 VVFFKKGSPNTLQAIAAD-GTGKPVQLFTSGPAANLTIANDARPSLSPDGEFLVVRSSTD 593 Query: 278 --KDEAMDIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 +D+ +Y V L ++ RL T + ++SPD +I + S+ G ++ +V+ + Sbjct: 594 EKRDQNPGLYIVRLDGSSVRRLKTKPQATD--PAWSPDGERIAYWSNNAGGDRGFVVVIS 651 Query: 335 GSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DS 390 + + DK + DPVWSP GD IAFT+ I M DGS R L Sbjct: 652 VEPDAVAQPVINDKLTTDSDPVWSPNGDKIAFTREQNGDLEIFEMGSDGSDVRQLTHARG 711 Query: 391 NLQAPTWSPSGRSLIFSRKKD--GDTGSKLYSI---DLNGRNETLINTPAYASDPQW 442 + Q P + P GR ++FS ++D +L+ + D + L + +W Sbjct: 712 DDQDPAFGPDGR-IVFSGQRDPANPNARQLFVLNPNDPAAGDRQLTTLGGFNGHARW 767 Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 92/200 (46%), Gaps = 15/200 (7%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 TI++D S++ + G+F ++ S + L ++ DG+++R L + Sbjct: 570 TIANDARPSLSPD-GEF---LVVRSSTDEKRDQNPGLYIVRLDGSSVRRLKT--KPQATD 623 Query: 217 PRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALI 274 P +SP+ +++AY + + D V ++ D + + N + + P +S NG + Sbjct: 624 PAWSPDGERIAYWSNNAGGDRGFVVVISVEPDAVAQPVINDKLTTDSDPVWSPNGDKIAF 683 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE----QLYV 330 + +++ ++I+ + + +LT+ + ++ PD +IVF R+ QL+V Sbjct: 684 TREQNGDLEIFEMGSDGSDVRQLTHARGDDQDPAFGPDG-RIVFSGQRDPANPNARQLFV 742 Query: 331 MQSNG--SDQKRISQDKEAS 348 + N + ++++ + Sbjct: 743 LNPNDPAAGDRQLTTLGGFN 762 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 21/208 (10%) Query: 257 RSMILAPRFSSN--GK-RALISVQKDEAMDIYSVDLQS----NATERLTNTLFINISASY 309 PR S G+ + + ++ D++ D+ + L ++ + Sbjct: 470 PGAFTLPR-SPEPLGRDTVVYASNRNGNYDLFRGDVTGDGGLQNDKPLLTGPDNDMLPAI 528 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA------SYFDPVWSPQGDLIAF 363 S D +VF + ++ A + P SP G+ + Sbjct: 529 SGDRKTVVFFKKGSPNTLQAIAADGTGKPVQLFTSGPAANLTIANDARPSLSPDGEFLVV 588 Query: 364 TKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + EK + +++ DGS R L P WSP G + + G + Sbjct: 589 RSSTDEKRDQNPGLYIVRLDGSSVRRLKTKPQATDPAWSPDGERIAYWSNNAGGDRGFVV 648 Query: 420 SIDL--NGRNETLINTP-AYASDPQWVG 444 I + + + +IN SDP W Sbjct: 649 VISVEPDAVAQPVINDKLTTDSDPVWSP 676 >gi|320161703|ref|YP_004174928.1| hypothetical protein ANT_23020 [Anaerolinea thermophila UNI-1] gi|319995557|dbj|BAJ64328.1| hypothetical protein ANT_23020 [Anaerolinea thermophila UNI-1] Length = 645 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 20/231 (8%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 F + +++ Y + + L T D + P S +G R + + Sbjct: 104 FMRDGERIHLFAYHPKFLPLTRLTRTAWDE------------MHPSLSPDGNRLAFTSHQ 151 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + D++ +DL + T+++T + + ++SPD + +E+ R + +Y+ N Q Sbjct: 152 NGYWDLFILDLTTGETQQITQSPEYEGAPTWSPDGQWLAYEAYRNEQLDIYLQSLNDLSQ 211 Query: 339 KRI-SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--- 394 I D A+ DP WSP G IAF I + D +ER + + ++ Sbjct: 212 PPIQLTDDPAADSDPAWSPGGRTIAFVSTRTGDAEIWLANLDKPEERFVNISRDPRSADL 271 Query: 395 -PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P WS GR L ++ +K+ + + + + AY D W Sbjct: 272 NPVWSNDGRYLAYATRKESEHRILTWD---SQNPQDPAVMSAYGDDVAWTP 319 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 10/179 (5%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 L+ ++ E + +++ + RLT T + + S SPD +++ F S + G L+++ Sbjct: 101 LLLFMRDGERIHLFAYHPKFLPLTRLTRTAWDEMHPSLSPDGNRLAFTSHQNGYWDLFIL 160 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVED 389 + ++I+Q E P WSP G +A+ + E+ I + + L +D Sbjct: 161 DLTTGETQQITQSPEYE-GAPTWSPDGQWLAYEAYRNEQLDIYLQSLNDLSQPPIQLTDD 219 Query: 390 SNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS----DPQWV 443 + P WSP GR++ F + GD ++++ +L+ E +N +P W Sbjct: 220 PAADSDPAWSPGGRTIAFVSTRTGD--AEIWLANLDKPEERFVNISRDPRSADLNPVWS 276 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 93/255 (36%), Gaps = 16/255 (6%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 D ++I + ++ T D+++ S++ + R+ F S L Sbjct: 107 DGERIHLFAYHPKFLPLTRLTRTAWDEMHPSLSPDGN----RLAFTSHQ----NGYWDLF 158 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 ++D + +T S + P +SP+ Q +AY Y +E + + + P ++ Sbjct: 159 ILDLTTGETQQITQSPE-YEGAPTWSPDGQWLAYEAYRNEQLDIYLQSLNDLSQPPIQLT 217 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL---TNTLFINISASYSP 311 + + P +S G+ + +I+ +L + + +++ +S Sbjct: 218 DDPAADSDPAWSPGGRTIAFVSTRTGDAEIWLANLDKPEERFVNISRDPRSADLNPVWSN 277 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 D + + + +E + ++ S + A D W+P F+ Sbjct: 278 DGRYLAYATRKESEHRILTWDSQNPQDPAVM---SAYGDDVAWTPDEQW-MFSTLEQPNQ 333 Query: 372 AIGVMKKDGSQERLL 386 ++ GS +RL+ Sbjct: 334 HALLVSLRGSLQRLI 348 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 11/97 (11%) Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTG 415 +G L+ F + GE+ + L + + P+ SP G L F+ ++G Sbjct: 98 EGVLLLFMR-DGERIHLFAYHPKFLPLTRLTRTAWDEMHPSLSPDGNRLAFTSHQNGYW- 155 Query: 416 SKLYSIDLN-GRNETLINTP------AYASDPQWVGF 445 L+ +DL G + + +P ++ D QW+ + Sbjct: 156 -DLFILDLTTGETQQITQSPEYEGAPTWSPDGQWLAY 191 >gi|119472449|ref|ZP_01614548.1| Tol biopolymer transport system component [Alteromonadales bacterium TW-7] gi|119444886|gb|EAW26185.1| Tol biopolymer transport system component [Alteromonadales bacterium TW-7] Length = 153 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSK 71 K+ + +++L+G F +A +++ P++I K+ I + K+S+V++ Sbjct: 4 KLRVACVVLLLG--FQGIANAALEIVITEGVDGARPIAIVPFKYTGIGPIPQKLSDVIAA 61 Query: 72 DLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW 131 DL RS F + Q+ + D + W + G + ++ G+V ++ R V + L Sbjct: 62 DLVRSGKFKPVDVAQMPQQP-SEDQAIDYASWVNQGVEAVLVGQVEQQTDGRYLVRYELV 120 Query: 132 DVKDRKQIIGKKFFSSPASW 151 DV + G S Sbjct: 121 DVIRGQITGGNTQMMSNGQL 140 >gi|52081717|ref|YP_080508.1| putative acylaminoacyl-peptidase YuxL [Bacillus licheniformis ATCC 14580] gi|52787103|ref|YP_092932.1| YuxL [Bacillus licheniformis ATCC 14580] gi|52004928|gb|AAU24870.1| putative acylaminoacyl-peptidase YuxL [Bacillus licheniformis ATCC 14580] gi|52349605|gb|AAU42239.1| YuxL [Bacillus licheniformis ATCC 14580] Length = 653 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 47/265 (17%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNG 269 + +P++SP+ K+AY + Y I K+ + PR+S +G Sbjct: 16 ITDPQYSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQHPRWSPDG 75 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------ 317 K + ++E IY + ++T+ + +SPD ++ Sbjct: 76 KYLAFTSNREETAQIYVISAAGGEARKVTDIPYDVSQPEWSPDGKSLLCSVKLTKEESVD 135 Query: 318 -------------------FESD-----REGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +++D R QL ++Q + K+++ D E +F Sbjct: 136 DEKKTEIEDHEPLEVDSLSYKADGQGFKRGKYTQLVLVQVETGEMKQLT-DLERDHFSHA 194 Query: 354 WSPQGDLIAFTKFSGEKF--AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKK 410 +SP GD IAF + + +M + L ++ + ++SP G+ L F + Sbjct: 195 FSPCGDQIAFCANQTDMRVNDVYLMNLSTGDLKRLTGQNGIFSSLSFSPDGKHLAFIGNE 254 Query: 411 DGDTGSKL---YSIDLNGRNETLIN 432 + L + D+ T + Sbjct: 255 KEYQNATLDKAWLYDIETGKLTCLT 279 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 10/105 (9%) Query: 348 SYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 S DP +SP G IA+ K I + ++ Q P WSP Sbjct: 15 SITDPQYSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQHPRWSPD 74 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 G+ L F+ + + +++Y I G + + P S P+W Sbjct: 75 GKYLAFTSNR--EETAQIYVISAAGGEARKVTDIPYDVSQPEWSP 117 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 78/265 (29%), Gaps = 58/265 (21%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA------------------------ 227 + V+ G R +T + +P +SP+ + + Sbjct: 89 QIYVISAAGGEARKVTD-IPYDVSQPEWSPDGKSLLCSVKLTKEESVDDEKKTEIEDHEP 147 Query: 228 -----------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + ++ L+ K++ + + FS G + Sbjct: 148 LEVDSLSYKADGQGFKRGKYTQLVLVQVETGEM-KQLTDLERDHFSHAFSPCGDQIAFCA 206 Query: 277 QKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-----LY 329 + + D+Y ++L + +RLT I S S+SPD + F + + + + Sbjct: 207 NQTDMRVNDVYLMNLSTGDLKRLTGQNGIFSSLSFSPDGKHLAFIGNEKEYQNATLDKAW 266 Query: 330 VMQSNGSDQKRISQDKEASYFD--------------PVWSPQGDLIAFTKFSGEKFAIGV 375 + +++ + D P W+ G+ I Sbjct: 267 LYDIETGKLTCLTEMLDVHLSDAVAGDSLVGGVLPKPAWTKDGNGFYVIGSDQGSTGIYY 326 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPS 400 + +G + +E ++ + P Sbjct: 327 ISIEGLAYPVRLEKEHVNGFSLHPD 351 >gi|297184122|gb|ADI20241.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 365 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 93/253 (36%), Gaps = 37/253 (14%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL--------RVYLMDTRIDRAPKRIGNF 256 Y P IL+ F + A + +Y+ D I + Sbjct: 112 YFMPGDSTILYASTFRGDTACPAVPERGESGAYVWPIYADFDIYISDLNGHIVDTLI-SG 170 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 S +G + + + + +++Y+ D+ + ++T L + A +SPDS ++ Sbjct: 171 PGYDAEATVSPDGTKIVFTSDRSGDLELYTCDIDGSNIVQVTTGLGYDGGAFFSPDSKKL 230 Query: 317 VFESDR--------------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 VF S R ++Y +GS+ +++Q A++ P + P Sbjct: 231 VFRSSRPQTEEEVKKYKDLLSQGMVEPTHMEIYTCNVDGSELTQVTQLGNANW-APFYHP 289 Query: 357 QGDLIAFT----KFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK- 410 G I F+ G F + ++ DG+ + D A P +S L+F+ + Sbjct: 290 SGTKIIFSTNHHSERGYPFNLFMINADGTGLEQVTYDGVFDAFPMFSSDCSKLVFASNRN 349 Query: 411 -DGDTGSKLYSID 422 G + L+ +D Sbjct: 350 NGGSRATNLFIVD 362 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 38/200 (19%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-- 323 S++G K + ++ +LTN N A +S D + + F+S+ E Sbjct: 22 SADGASGATWESKISYDEEIHLE----GIRQLTNG-GDNAEAYFSFDGTMLTFQSNAEKW 76 Query: 324 GK--EQLYVMQSN-----GSDQKRISQD---------------------KEASYFDPVWS 355 G +Q+Y N + + IS D P Sbjct: 77 GNKCDQIYAFDWNADTIWDKEPQLISNDLGRTTCAYFMPGDSTILYASTFRGDTACPAVP 136 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 +G+ A+ F I + +G L+ T SP G ++F+ + GD Sbjct: 137 ERGESGAYVWPIYADFDIYISDLNGHIVDTLISGPGYDAEATVSPDGTKIVFTSDRSGD- 195 Query: 415 GSKLYSIDLNGRNETLINTP 434 +LY+ D++G N + T Sbjct: 196 -LELYTCDIDGSNIVQVTTG 214 >gi|260062216|ref|YP_003195296.1| hypothetical protein RB2501_11502 [Robiginitalea biformata HTCC2501] gi|88783778|gb|EAR14949.1| hypothetical protein RB2501_11502 [Robiginitalea biformata HTCC2501] Length = 1150 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 85/205 (41%), Gaps = 21/205 (10%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + ++ S +G+ + D IY++ LT L + +SPD + Sbjct: 58 QGTWISLDVSPDGQTIAFDLMGD----IYTIPATGGTATALTRGLPYEVHPRFSPDGKSL 113 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 ++ SD+ G E +++M ++ ++++ + YF WSP G + + + Sbjct: 114 LYISDKSGSENIWIMDLESREETQLTKSENKHYFSADWSPDGTYVVGAAGR-RNIKLHLY 172 Query: 377 KKDGSQERLLVEDSNL---QAPTWSPSGRSLIFSRKKDG-DTGSKL--YSIDL----NGR 426 ++G L++ P +SP G+ + FSR+ + ++L Y I +G Sbjct: 173 HREGGGGSQLLDKPENLKTIDPAFSPDGKRIYFSRRTGAWNYNAQLPQYQIGTYDMEDGG 232 Query: 427 NETLIN------TPAYASDPQWVGF 445 + + + TP + D +W+ F Sbjct: 233 SAVITSRYGSAFTPTPSPDGKWLVF 257 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 18/227 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ Q +A+ DI + + + PRFS +GK L K Sbjct: 67 SPDGQTIAFDLM--GDIYTI----PATGGTATALTRGLPYEVHPRFSPDGKSLLYISDKS 120 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + +I+ +DL+S +LT + + SA +SPD + +V + R + + G Sbjct: 121 GSENIWIMDLESREETQLTKSENKHYFSADWSPDGTYVVGAAGRRNIKLHLYHREGGGGS 180 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKK-DGSQERLLVED 389 + + + + DP +SP G I F++ +G ++ IG DG + Sbjct: 181 QLLDKPENLKTIDPAFSPDGKRIYFSRRTGAWNYNAQLPQYQIGTYDMEDGGSAVITSRY 240 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + PT SP G+ L+F + + TG +L +L E + P Sbjct: 241 GSAFTPTPSPDGKWLVFGSRYEEHTGLRLR--NLETGEERWLAYPVQ 285 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 108/316 (34%), Gaps = 50/316 (15%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI-LFEPRFSPNQQKVAY 228 D++ +V +G L + R+G L + + +P FSP+ +++ + Sbjct: 148 SADWSPDGTYVV--GAAGRRNIKLHLYHREGGGGSQLLDKPENLKTIDPAFSPDGKRIYF 205 Query: 229 ATYDDEDILRVYLMDTRIDRA------PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + L +I I + P S +GK + + +E Sbjct: 206 SRRTGAWNYNAQLPQYQIGTYDMEDGGSAVITSRYGSAFTPTPSPDGKWLVFGSRYEEHT 265 Query: 283 DIYSVDLQSNATERLTNTLFINISAS-----------YSPDSSQIVFESDREGKEQLYVM 331 + +L++ L + + S +SPDS ++ F S L + Sbjct: 266 GLRLRNLETGEERWLAYPVQRDEQESIAPLGVLPAMAFSPDSKEL-FLSYGGKIRALSIA 324 Query: 332 QSNGSDQK-----------RISQDKEASY---------FDPVWSPQGDLIAFTKFSGEKF 371 ++ + R+ S D V SP G +AFT + Sbjct: 325 DNSVREIPFTAPVSLDLGPRLDFKYPISDAPELPVTQIRDAVPSPDGKHLAFTALN---- 380 Query: 372 AIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN--E 428 + VM+ R L + +A P WSP G L+FS + G G LY + +GR Sbjct: 381 RLYVMELPDGAPRRLTDHEFTEAQPAWSPDGGELVFSGWQPG--GGHLYKVRTDGRGGAR 438 Query: 429 TLINTPAYASDPQWVG 444 + P S P W Sbjct: 439 AITRVPGIYSQPAWSY 454 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 29/277 (10%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 S ++G + S + ++ + + + G LT PRFSP+ + Sbjct: 53 SFQAQQGTWISLDVSPDGQTIAFDLMGDIYTIPATGGTATALTRGL-PYEVHPRFSPDGK 111 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 + Y + D +++MD + + + +S +G ++ + + Sbjct: 112 SLLYIS-DKSGSENIWIMDLESREETQLTKSENKHYFSADWSPDGTY-VVGAAGRRNIKL 169 Query: 285 YSVDLQSNATERLTNTLFI--NISASYSPDSSQIVFESDREG---------KEQLYVMQS 333 + + +L + I ++SPD +I F S R G + Q+ Sbjct: 170 HLYHREGGGGSQLLDKPENLKTIDPAFSPDGKRIYF-SRRTGAWNYNAQLPQYQIGTYDM 228 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED---- 389 I+ + S F P SP G + F E + + + +ER L Sbjct: 229 EDGGSAVITS-RYGSAFTPTPSPDGKWLVFGSRYEEHTGLRLRNLETGEERWLAYPVQRD 287 Query: 390 --------SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 L A +SP + L F + Sbjct: 288 EQESIAPLGVLPAMAFSPDSKEL-FLSYGGKIRALSI 323 Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 40/244 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--------MILAPRF---- 265 FSP+ +++ + L + R + + AP Sbjct: 302 AFSPDSKELFLSYGGKIRALSIADNSVREIPFTAPVSLDLGPRLDFKYPISDAPELPVTQ 361 Query: 266 ------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GK + +Y ++L A RLT+ F ++SPD ++VF Sbjct: 362 IRDAVPSPDGKHLAFTA----LNRLYVMELPDGAPRRLTDHEFTEAQPAWSPDGGELVFS 417 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-------------F 366 + G LY ++++G R Y P WS D I F + Sbjct: 418 GWQPGGGHLYKVRTDGRGGARAITRVPGIYSQPAWSYNSDRIVFLRGYAQAYDEGTGPNT 477 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 G + + + DG + L+ + P ++ + S + G L S+ +G Sbjct: 478 RGSREDLVWIPSDGGAQTLIDKSEGRTTPHFTRGDDRIYLSHPQRG-----LLSLRWDGT 532 Query: 427 NETL 430 +E Sbjct: 533 DEKQ 536 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 86/277 (31%), Gaps = 68/277 (24%) Query: 191 NSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 N L VM+ DGA R + +P +SP+ ++ ++ + +Y + T Sbjct: 380 NRLYVMELPDGAPRR--LTDHEFTEAQPAWSPDGGELVFSGWQPGGG-HLYKVRTDGRGG 436 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISV-------------QKDEAMDIYSVDLQSNATER 296 + I + P +S N R + + D+ + A Sbjct: 437 ARAITRVPGIYSQPAWSYNSDRIVFLRGYAQAYDEGTGPNTRGSREDLVWIPSDGGAQTL 496 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR---------------I 341 + + + ++ ++ S + L ++ +G+D+K+ + Sbjct: 497 IDKSEGR-TTPHFTR-GDDRIYLSHPQ--RGLLSLRWDGTDEKQHLILKGIETYGSRDIL 552 Query: 342 SQDKEASYF-------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 ++ + + SP G A + + + +++ V + + Sbjct: 553 TESGHGGHRLLPPDSGLREEDDKASRPAEVRISPDGKR-ALAQINNDIYSVHVPRYGKTP 611 Query: 383 ERLLVEDSNL------------QAPTWSPSGRSLIFS 407 + + + + P WS + +S Sbjct: 612 TVSVAKPGDAAFPAVKLTQLGGEFPAWSGDSGKVHWS 648 >gi|307610341|emb|CBW99909.1| hypothetical protein LPW_16671 [Legionella pneumophila 130b] Length = 656 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 113/306 (36%), Gaps = 58/306 (18%) Query: 195 VMDRDGANIRYLTP----SRDQILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTR 245 V+ DG + L R Q + EP SP+ + VAY V+ + Sbjct: 13 VVFHDGWAGKRLPELDDLYRIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVD 72 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S P++S NGK K+ I+ +Q N +LT Sbjct: 73 SKSSQQITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTYIDGE 132 Query: 304 NISASYSPDSSQIVFE---SDRE------------------------GKEQLYVMQSNGS 336 ++SPDS++I F SD G++ LY+++ Sbjct: 133 VSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSK 192 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLVE- 388 +++ D + P WSP G IAF G+ + I +++ G++ER L Sbjct: 193 AITQLT-DGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHF 251 Query: 389 DSNLQAP------TWSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLI-NTPAYA 437 + P +WSP + + R + ++L ID+N ++E +I + Sbjct: 252 PGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWY 311 Query: 438 SDPQWV 443 P+W Sbjct: 312 YKPKWS 317 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 47/291 (16%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 DI + G + + + + I + + D + + +T + D P++S Sbjct: 35 DISEPDLSPDGKWVAYTV-SQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWS 93 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD- 279 PN + +AY + ++ + + D ++ + +S + R QK Sbjct: 94 PNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTYIDGEVSDFTWSPDSNRIAFIAQKSD 153 Query: 280 --------------------------EAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +Y V+L+S A +LT+ ++SPD Sbjct: 154 PSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDG 213 Query: 314 SQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDP------VWSPQGDLI 361 I F + DR +Y+++ ++R S +P WSP I Sbjct: 214 KYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFPGSDMNPDYDSNLSWSPDSSKI 273 Query: 362 AFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLI 405 A+ + + ++ + ++ + E+++ N P WS G+ + Sbjct: 274 AYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWYYKPKWSQDGKFIY 324 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 86/234 (36%), Gaps = 50/234 (21%) Query: 260 ILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINIS-ASYSPD 312 I P S +GK +V + A D ++ V + S +++++T + S +SP+ Sbjct: 36 ISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWSPN 95 Query: 313 SSQIVFESD--REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-- 368 + + SD +EG Q+++ + + +++ + D WSP + IAF Sbjct: 96 GKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTYI-DGEVSDFTWSPDSNRIAFIAQKSDP 154 Query: 369 -------------------------EKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGR 402 + + +++ L + ++ + P WSP G+ Sbjct: 155 SNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGK 214 Query: 403 SLIFSRKKDGD----TGSKLYSIDL-NGRNETLINT-PAYASDP------QWVG 444 + F K+ D +Y I+ +G E + P +P W Sbjct: 215 YIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFPGSDMNPDYDSNLSWSP 268 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 92/258 (35%), Gaps = 50/258 (19%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-------- 228 + ++S+ G + + + N + D + + +SP+ ++A+ Sbjct: 99 LAYLSDGGKEGTTQIWIASVQD---NKEHQLTYIDGEVSDFTWSPDSNRIAFIAQKSDPS 155 Query: 229 ------------------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 Y + +YL++ + +A ++ + P +S +GK Sbjct: 156 NEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELK-SKAITQLTDGNHDEYLPAWSPDGK 214 Query: 271 RALISVQKD------EAMDIYSVDLQSN-ATERLTNTLFINISA------SYSPDSSQIV 317 ++ DIY ++ +S +LT+ +++ S+SPDSS+I Sbjct: 215 YIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFPGSDMNPDYDSNLSWSPDSSKIA 274 Query: 318 FESDREGK------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + E + QL ++ N D+K I+ Y+ P WS G I Sbjct: 275 YLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNW-YYKPKWSQDGKFIYALIEESRNT 333 Query: 372 AIGVMKKDGSQERLLVED 389 + + +Q + L Sbjct: 334 YLNRIDIHSAQIKKLTGG 351 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 41/182 (22%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD + + D +++ + + ++I+ +++S P WSP G Sbjct: 38 EPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWSPNGK 97 Query: 360 LIAFTKFSG--EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD----- 411 +A+ G I + ++E L D + TWSP + F +K Sbjct: 98 WLAYLSDGGKEGTTQIWIASVQDNKEHQLTYIDGEVSDFTWSPDSNRIAFIAQKSDPSNE 157 Query: 412 --------------------GDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVG 444 G LY ++L + T + PA++ D +++ Sbjct: 158 EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIA 217 Query: 445 FM 446 F+ Sbjct: 218 FV 219 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 20/208 (9%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR-----VYL 241 G ++ L +++ I LT + P +SP+ + +A+ T +D R +YL Sbjct: 178 GKGRDHLYLVELKSKAITQLTDGNHD-EYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYL 236 Query: 242 MDTRIDRAPKRIGNFRSMILAP------RFSSNGKRALISVQKDEAM------DIYSVDL 289 ++ + +++ +F + P +S + + + + +D+ Sbjct: 237 IEPKSGAKERQLTHFPGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDI 296 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + + +S D I + L + + + K+++ Sbjct: 297 NTKDEKIIAPRDNWYYKPKWSQDGKFIYALIEESRNTYLNRIDIHSAQIKKLTGGLRYDM 356 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 + +G +I T + ++ Sbjct: 357 DYSL--AKGKIILLTTDDTHPSELFILN 382 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 17/173 (9%) Query: 176 RILFVSESVVSGIIK--NSLCVMDRDGANIRYLTPSRDQILFEP------RFSPNQQKVA 227 I FV++ + +++ P +SP+ K+A Sbjct: 215 YIAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFPGSDMNPDYDSNLSWSPDSSKIA 274 Query: 228 Y-----ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Y + ++ ++D + K I + P++S +GK +++ Sbjct: 275 YLRSNEHQWTYYSPNQLAIIDINT-KDEKIIAPRDNWYYKPKWSQDGKFIYALIEESRNT 333 Query: 283 DIYSVDLQSNATERLTNTLFINISASYS-PDSSQIVFESDREGKEQLYVMQSN 334 + +D+ S ++LT L ++ YS I+ +D +L+++ S Sbjct: 334 YLNRIDIHSAQIKKLTGGLRYDMD--YSLAKGKIILLTTDDTHPSELFILNSG 384 Score = 41.9 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 391 NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLINTPAYASD--PQWVG 444 ++ P SP G+ + ++ + D + ++++ + ++ ++ I +S P+W Sbjct: 35 DISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQQITFAEDSSSSLPKWSP 94 >gi|312886639|ref|ZP_07746246.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] gi|311300741|gb|EFQ77803.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] Length = 1078 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 25/212 (11%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + S +G+ + + D IY++ + L ++ +SPD Sbjct: 38 TTDEGTWMDLDVSPDGRTIVFDLLGD----IYAMPITGGKATLLAGGKAWDVQPRFSPDG 93 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FT-KFSG 368 I + SD +G + +++M ++G +++ ++++ + W+P G + FT S Sbjct: 94 KSISYTSDHDGGDNIWLMNADGGNKRPVTKENFRLLNNASWTPDGQYLVARKHFTGSRSL 153 Query: 369 EKFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRK--------KDGDTGS 416 + + K+G L + + P SP G+ + +S + D + Sbjct: 154 GAGEMWLYYKNGGDGIQLTKRKNDQQDAGEPVASPDGKYIYWSEDITPGPSFQYNKDPNA 213 Query: 417 KLYSIDL----NGRNETLINTPAYASDPQWVG 444 +Y+I G ET+ A PQ Sbjct: 214 GIYAIKRLNRETGEIETVAGGAGGACRPQLSP 245 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 100/263 (38%), Gaps = 46/263 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------------ 265 ++P+ + + + Y I + + + P + + +++ A F Sbjct: 297 AWTPDSKNIIF--YAKGKIWNLDVASLNVANIPFDVTSTQTISDALHFPQKVFQDEFTVK 354 Query: 266 -------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S +GK + A IY+ L + +R+T + +SPD +V+ Sbjct: 355 MIRQLTTSPDGKMVAF----NAAGYIYTKALPNGVPQRITTGTDLEYEPEFSPDGKSLVY 410 Query: 319 ESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------ 371 S + K + + R++ D+ Y+ P ++ +GD I + K G + Sbjct: 411 VSWADEMKGSINTIDLTTHLIMRLTTDR-GYYYSPKYANRGDKIIYRKGEGNEVLGYFFG 469 Query: 372 ---AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I ++ G + +L++ + P +S + + + K+ +D++G N+ Sbjct: 470 NAPGIYIIPVTGGKPQLVINNG--IHPQFSADDSKIYYQSSEGDKKAFKV--MDVSGANQ 525 Query: 429 TLINTPAYA------SDPQWVGF 445 + T YA D +W+ F Sbjct: 526 KTLYTSTYATQFAPSPDGKWMAF 548 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 30/231 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + D +Y M + ++ + PRFS +GK + D Sbjct: 50 SPDGRTIVFDLLGD-----IYAMPI-TGGKATLLAGGKAWDVQPRFSPDGKSISYTSDHD 103 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ ++ +T F + +AS++PD +V F R G ++++ Sbjct: 104 GGDNIWLMNADGGNKRPVTKENFRLLNNASWTPDGQYLVARKHFTGSRSLGAGEMWLYYK 163 Query: 334 NGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVMKK 378 NG D ++++ K +PV SP G I +++ + +AI + + Sbjct: 164 NGGDGIQLTKRKNDQQDAGEPVASPDGKYIYWSEDITPGPSFQYNKDPNAGIYAIKRLNR 223 Query: 379 DGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + + P SP + + F ++ S LY +L + E Sbjct: 224 ETGEIETVAGGAGGACRPQLSPDNKLMAFVKRD--RLKSVLYIKNLETQEE 272 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 20/198 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + VA+ + + P+RI + P FS +GK + D Sbjct: 362 SPDGKMVAF------NAAGYIYTKALPNGVPQRITTGTDLEYEPEFSPDGKSLVYVSWAD 415 Query: 280 E-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQLY 329 E I ++DL ++ RLT S Y+ +I++ +Y Sbjct: 416 EMKGSINTIDLTTHLIMRLTTDRGYYYSPKYANRGDKIIYRKGEGNEVLGYFFGNAPGIY 475 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++ G + + + P +S I + G+K A VM G+ ++ L Sbjct: 476 IIPVTGGKPQLVINNG----IHPQFSADDSKIYYQSSEGDKKAFKVMDVSGANQKTLYTS 531 Query: 390 SNLQAPTWSPSGRSLIFS 407 + SP G+ + F+ Sbjct: 532 TYATQFAPSPDGKWMAFT 549 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 118/339 (34%), Gaps = 61/339 (17%) Query: 98 PRFQDWN--SLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA 155 P F W S G++ L V +DV + Sbjct: 294 PNF-AWTPDSKNIIFYAKGKIWNLDVASLNVANIPFDVTSTQ------------------ 334 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK------NSLCVMDRDGANIRYLTPS 209 TISD ++ + +F +++ + G + +G + +T Sbjct: 335 -TISDALHFPQKVFQDEFTVKMIRQLTTSPDGKMVAFNAAGYIYTKALPNG-VPQRITTG 392 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 D + +EP FSP+ + + Y ++ DE + +D R+ R +P++++ G Sbjct: 393 TD-LEYEPEFSPDGKSLVYVSWADEMKGSINTIDL-TTHLIMRLTTDRGYYYSPKYANRG 450 Query: 270 KRALIS---------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + + A IY + + + + N I +S D S+I ++S Sbjct: 451 DKIIYRKGEGNEVLGYFFGNAPGIYIIPVTGGKPQLVINNG---IHPQFSADDSKIYYQS 507 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 K+ VM +G++QK + A+ F P SP G +AFT E F + Sbjct: 508 SEGDKKAFKVMDVSGANQKTLYTSTYATQFAP--SPDGKWMAFT----ELFNCYITPMIT 561 Query: 381 SQERLLVEDSNLQAP------------TWSPSGRSLIFS 407 + + N P WS + ++++ Sbjct: 562 TGGAQDLSAGNKAIPLNRLTRDAGTYLHWSKDSQHIMWT 600 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 96/291 (32%), Gaps = 42/291 (14%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 T ++G + + + + + M G L +PRFSP+ + Sbjct: 37 FTTDEGTWMDLDVSPDGRTIVFDLLGDIYAMPITGGKA-TLLAGGKAWDVQPRFSPDGKS 95 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-E 280 ++Y + D + ++ P NFR + A ++ +G+ + + + Sbjct: 96 ISYTSDHDGGDNIWLMNADGGNKRPVTKENFRLLNNA-SWTPDGQYLVARKHFTGSRSLG 154 Query: 281 AMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESD-------------REG 324 A +++ +LT N SPD I + D G Sbjct: 155 AGEMWLYYKNGGDGIQLTKRKNDQQDAGEPVASPDGKYIYWSEDITPGPSFQYNKDPNAG 214 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + + + + ++ P SP L+AF K K + + + +E Sbjct: 215 IYAIKRLNRETGEIETVA-GGAGGACRPQLSPDNKLMAFVKRDRLKSVLYIKNLETQEEW 273 Query: 385 LLVED------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + ++ W+P +++IF K K++++D+ Sbjct: 274 PVYDNLSHDQQETWAIFGVYPNFAWTPDSKNIIFYAK------GKIWNLDV 318 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 55/309 (17%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQKVAYATYDDEDILR 238 + + + + ++G + LT ++ Q EP SP+ + + ++ Sbjct: 146 HFTGSRSLGAGEMWLYYKNGGDGIQLTKRKNDQQDAGEPVASPDGKYIYWSEDITPGPSF 205 Query: 239 VYLMD-----------TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y D R + + P+ S + K + +Y Sbjct: 206 QYNKDPNAGIYAIKRLNRETGEIETVAGGAGGACRPQLSPDNKLMAFVKRDRLKSVLYIK 265 Query: 288 DLQSNATERLTNTLFIN---------ISAS--YSPDSSQIVFESDREGKEQLYVMQSNGS 336 +L++ + + L + + + ++PDS I+F + K +++ + Sbjct: 266 NLETQEEWPVYDNLSHDQQETWAIFGVYPNFAWTPDSKNIIFYA----KGKIWNLDVASL 321 Query: 337 DQKRISQD-------KEASYFDPVW---------------SPQGDLIAFTKFSGEKFAIG 374 + I D +A +F SP G ++AF + + Sbjct: 322 NVANIPFDVTSTQTISDALHFPQKVFQDEFTVKMIRQLTTSPDGKMVAF---NAAGYIYT 378 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINT 433 +G +R+ P +SP G+SL++ D GS + +IDL L Sbjct: 379 KALPNGVPQRITTGTDLEYEPEFSPDGKSLVYVSWADEMKGS-INTIDLTTHLIMRLTTD 437 Query: 434 PAYASDPQW 442 Y P++ Sbjct: 438 RGYYYSPKY 446 >gi|145593151|ref|YP_001157448.1| peptidase S9B dipeptidylpeptidase IV subunit [Salinispora tropica CNB-440] gi|145302488|gb|ABP53070.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Salinispora tropica CNB-440] Length = 590 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 8/245 (3%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G +R L + + +P+ + + + ++ Sbjct: 17 GFRLRRLAADPNG-SGDGAIAPDGTR--FVASSKRNGSVNLWFFDLSSGKWQQGTWGTGD 73 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 + ++S +G++ + + I+ L +LT+ S+SPD S + F Sbjct: 74 DIEAQWSPDGRQLTFTSSRGGHKAIWLYRLSDGQVRQLTSADHEEEYPSWSPDGSTVAFV 133 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 G+ V+ + G + ++ + W+P G + + A+ ++ Sbjct: 134 GGSWGRRHFLVVPATGGTPRPVTTN-PGRAGACSWAPDGRWLVCHSYDTGAGAVWLLDSQ 192 Query: 380 GSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYA 437 ++ + + S+ PT P+ ++ FSR +G S ++ L +G L+ T A Sbjct: 193 TAEAIQVTDGSSWDYKPTICPTRPAVAFSRSNEGR--SVIWVQRLGDGTGGPLVVTGADD 250 Query: 438 SDPQW 442 P W Sbjct: 251 RWPTW 255 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 96/260 (36%), Gaps = 14/260 (5%) Query: 185 VSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 S ++ + V DG + D P ++ + + + DE + + D Sbjct: 222 RSNEGRSVIWVQRLGDGTGGPLVVTGAD--DRWPTWTRDGNHLFFHRLVDEGA-GIAVWD 278 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R + A F+ +G+R + + + ++L + ++ L Sbjct: 279 RRTRVVRDLVPAEHKPRYA-SFAPDGRRIVYGTEAGGRSRLRILNLDTGTSQPLPAGEA- 336 Query: 304 NISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDK---EASYFDPVWSPQG 358 ++SPD I D + ++ + + + + + + ++P G Sbjct: 337 -AFPTWSPDGRTIACTVRPDPSSRWEIATVDVSSGQVQLWTTGRTDLRGLHAPVSFAPDG 395 Query: 359 DLIAFTK-FSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGS 416 + F + + V+ + + L EDS +AP++SP GRS+IF + GD Sbjct: 396 RRLVFRSETEPFEANLLVLDLNSGRFTNLTEDSWWDEAPSFSPDGRSVIFMSTRGGDWTW 455 Query: 417 KLYSIDLNGRNETLINTPAY 436 Y IDL+ + + P Y Sbjct: 456 GFYRIDLDSKEIVTVAGPDY 475 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 15/260 (5%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + ++D A +T ++P P + VA++ ++ + P Sbjct: 186 VWLLDSQTAEAIQVTDGSS-WDYKPTICPTRPAVAFSRSNEGRSVIWVQRLGDGTGGPLV 244 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P ++ +G DE I D ++ L AS++PD Sbjct: 245 VTGADDRW--PTWTRDGNHLFFHRLVDEGAGIAVWDRRTRVVRDLVPAEHKPRYASFAPD 302 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EK 370 +IV+ ++ G+ +L ++ + + + P WSP G IA T + Sbjct: 303 GRRIVYGTEAGGRSRLRILNLDTGTSQPL---PAGEAAFPTWSPDGRTIACTVRPDPSSR 359 Query: 371 FAIGVMKKDGSQERLLVEDSNL----QAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLN- 424 + I + Q +L AP +++P GR L+F R + + L +DLN Sbjct: 360 WEIATVDVSSGQVQLWTTGRTDLRGLHAPVSFAPDGRRLVF-RSETEPFEANLLVLDLNS 418 Query: 425 GRNETLINTPAYASDPQWVG 444 GR L + P + Sbjct: 419 GRFTNLTEDSWWDEAPSFSP 438 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 11/234 (4%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-YATYDDEDILRVYLM 242 ++ L +++ D + L P +SP+ + +A D + + Sbjct: 309 GTEAGGRSRLRILNLDTGTSQPLPAGE---AAFPTWSPDGRTIACTVRPDPSSRWEIATV 365 Query: 243 DTRIDRA---PKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLT 298 D + + R + F+ +G+R + S + ++ +DL S LT Sbjct: 366 DVSSGQVQLWTTGRTDLRGLHAPVSFAPDGRRLVFRSETEPFEANLLVLDLNSGRFTNLT 425 Query: 299 NTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + + S+SPD ++F S R G Y + + + ++ +P + Sbjct: 426 EDSWWDEAPSFSPDGRSVIFMSTRGGDWTWGFYRIDLDSKEIVTVAGPDYIERNNPQLTV 485 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 G + T + + + DG+ + ++ P S G ++F+R + Sbjct: 486 DGR-VLSTMVASKVEELYEQLPDGAGRVVTEAGPAVRYPVPSADGEQVVFTRTR 538 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 3/157 (1%) Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ++ RL + + +PD ++ V S R G L+ + ++ + Sbjct: 15 VKGFRLRRLAADPNGSGDGAIAPDGTRFVASSKRNGSVNLWFFDLSSGKWQQGTWGT-GD 73 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS 407 + WSP G + FT G AI + + Q R L D + P+WSP G ++ F Sbjct: 74 DIEAQWSPDGRQLTFTSSRGGHKAIWLYRLSDGQVRQLTSADHEEEYPSWSPDGSTVAFV 133 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G L G + P A W Sbjct: 134 GGSWGRRHF-LVVPATGGTPRPVTTNPGRAGACSWAP 169 >gi|262194655|ref|YP_003265864.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078002|gb|ACY13971.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1598 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 116/286 (40%), Gaps = 15/286 (5%) Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIR 204 P + ++ H + +I + E GD F VVS S+ V + DG+ Sbjct: 945 PPGALQEAKHLLYSNIAPVVFTEHGDAVYSATFSPDGRRVVSASWDQSVRVWNADGSGQP 1004 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + + + FSP+ +++A A+ D V + + P + + + R Sbjct: 1005 LVLRGHEDAVLSASFSPDGRRIASASKDK----SVRVWNADGSGQPLLLRGHEEAVRSVR 1060 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G+ IS D + +++ D + ++ SA +SPD +IV S+ Sbjct: 1061 FSPDGRSI-ISASNDTTIRVWNADGSGRPLVLHGHEDAVH-SAHFSPDGRRIVSASN--- 1115 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + + V ++G+ + + + EA + +SP G I + I G + Sbjct: 1116 DKSVRVWNADGAGEPLVLRGHEAGVMEANFSPDGSRIVSASYD-RSVRIWPADGSGEAQV 1174 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 L + + A +SP G ++ + D ++++ D +G + TL Sbjct: 1175 LRGHEGRVYAAGFSPDGAYVVSASS---DKSARVWRADGSGLHWTL 1217 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 140/395 (35%), Gaps = 49/395 (12%) Query: 66 SEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTG------RVIKE 119 S +VS RS Q + + ++ GA +V+ RV + Sbjct: 1150 SRIVSASYDRSVRIWPADGSGEAQVLRGHEGRVYAAGFSPDGA-YVVSASSDKSARVWRA 1208 Query: 120 GKDRLRVEFRLWD--------VKDRKQIIGKKFFSSPASWRK-------IAHTISDDIYQ 164 L R D D + I+ + SS WR D + Sbjct: 1209 DGSGLHWTLRGHDDGVLSASFSADGEHIVTSSYDSSVRVWRARGSGQPLALRGHDDAVVA 1268 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + G +VS NS+ V + DG+ + D+ + FSP+ + Sbjct: 1269 ASFSPDGA----------RIVSASYDNSVRVWNADGSGEPVILRGHDKWVLWASFSPDGR 1318 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +V A+ D V + + + + FS +G R + S D ++ + Sbjct: 1319 RVISASLDK----SVRVWNADGSGEALVLRGHEDGVFTADFSPDGARIV-SASNDHSVRV 1373 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 ++ D S L L SA +SPD ++IV S + + V +++GS + + + Sbjct: 1374 WNAD-GSGRPRVLRGHLARVHSAQFSPDGARIVSASV---DKSVRVWRADGSGEPVVLRG 1429 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGR 402 E + +SP G I + V + DG+ E +++ + +SP GR Sbjct: 1430 HEDPVWSARFSPDGQRIVSAAMDKS---VRVWQADGTGEPVILRGHDDWVTWAEFSPDGR 1486 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++ + K D +++ D G+ L + Sbjct: 1487 FIVSASK---DKTVRVWRADGTGQPLVLRGHEMWV 1518 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 V+S + S+ V + DG+ + + +F FSP+ ++ A+ D V + Sbjct: 1318 RRVISASLDKSVRVWNADGSGEALVLRGHEDGVFTADFSPDGARIVSASNDH----SVRV 1373 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P+ + + + + +FS +G R + S D+++ ++ D S L Sbjct: 1374 WNADGSGRPRVLRGHLARVHSAQFSPDGARIV-SASVDKSVRVWRAD-GSGEPVVLRGHE 1431 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SA +SPD +IV + + + V Q++G+ + I + + +SP G I Sbjct: 1432 DPVWSARFSPDGQRIVSAAM---DKSVRVWQADGTGEPVILRGHDDWVTWAEFSPDGRFI 1488 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRK 409 + V + DG+ + L++ + +SP G+ L+ + Sbjct: 1489 VSASKDKT---VRVWRADGTGQPLVLRGHEMWVNKVRFSPDGQRLVSASD 1535 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 117/344 (34%), Gaps = 45/344 (13%) Query: 85 DSFKQKITNPDSIPRFQDWNSLGA----------QVLVTGRVIKEGKDRLRVEF----RL 130 + + I + W + G+ +V +G + + R+ Sbjct: 1230 SADGEHIVTSSYDSSVRVWRARGSGQPLALRGHDDAVVAASFSPDGARIVSASYDNSVRV 1289 Query: 131 WDV-KDRKQIIGKKF-------FSSPASWRKIAHTI--------SDDIYQSIT---GEKG 171 W+ + +I + SP R I+ ++ +D +++ E G Sbjct: 1290 WNADGSGEPVILRGHDKWVLWASFSPDGRRVISASLDKSVRVWNADGSGEALVLRGHEDG 1349 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F + +VS +S+ V + DG+ + + +FSP+ ++ A+ Sbjct: 1350 VFTADFSPDGARIVSASNDHSVRVWNADGSGRPRVLRGHLARVHSAQFSPDGARIVSASV 1409 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D V + P + + + RFS +G+R + S D+++ ++ D + Sbjct: 1410 DK----SVRVWRADGSGEPVVLRGHEDPVWSARFSPDGQRIV-SAAMDKSVRVWQAD-GT 1463 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L A +SPD IV S + + V +++G+ Q + + E Sbjct: 1464 GEPVILRGHDDWVTWAEFSPDGRFIVSASK---DKTVRVWRADGTGQPLVLRGHEMWVNK 1520 Query: 352 PVWSPQGDLIAFTKFSGEKFAIG--VMKKDGSQERLLVEDSNLQ 393 +SP G + + + + + RL S Sbjct: 1521 VRFSPDGQRLV-SASDDKTIRVWNDLSPVTLDDPRLWTRTSYCM 1563 >gi|54297561|ref|YP_123930.1| hypothetical protein lpp1611 [Legionella pneumophila str. Paris] gi|53751346|emb|CAH12762.1| hypothetical protein lpp1611 [Legionella pneumophila str. Paris] Length = 656 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 113/306 (36%), Gaps = 58/306 (18%) Query: 195 VMDRDGANIRYLTPSRD----QILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTR 245 V+ DG + L D Q + EP SP+ + VAY V+ + Sbjct: 13 VVFHDGWAGKRLPELNDLYRIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVD 72 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S P++S NGK K+ I+ +Q N +LT+ Sbjct: 73 SKSSQRITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGE 132 Query: 304 NISASYSPDSSQIVFE---SDRE------------------------GKEQLYVMQSNGS 336 ++SPDS++I F SD G++ LY+++ Sbjct: 133 VSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSK 192 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLVE- 388 +++ D + P WSP G IAF G+ + I +++ G++E L Sbjct: 193 AITQLT-DGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHF 251 Query: 389 DSNLQAP------TWSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLI-NTPAYA 437 + P +WSP + + R + ++L ID+N ++E +I + Sbjct: 252 PGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWY 311 Query: 438 SDPQWV 443 P+W Sbjct: 312 YKPKWS 317 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 50/326 (15%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 DI + G + + + + I + + D + + +T + D P++S Sbjct: 35 DISEPDLSPDGKWVAYTV-SQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWS 93 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD- 279 PN + +AY + ++ + + D ++ + + +S + R QK Sbjct: 94 PNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSD 153 Query: 280 --------------------------EAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +Y V+L+S A +LT+ ++SPD Sbjct: 154 PSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDG 213 Query: 314 SQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDP------VWSPQGDLI 361 I F + DR +Y+++ ++ S +P WSP I Sbjct: 214 KYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHFPGSDMNPDYDSNLSWSPDSSKI 273 Query: 362 AFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDT 414 A+ + + ++ + ++ + E+++ N P WS G+ + + Sbjct: 274 AYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWYYKPKWSQDGKFIY--ALIEESR 331 Query: 415 GSKLYSIDL-NGRNETLINTPAYASD 439 + L ID+ +G+ + L Y D Sbjct: 332 NTYLNRIDIHSGQIKKLTGGLRYDMD 357 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 41/182 (22%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD + + D +++ + + +RI+ +++S P WSP G Sbjct: 38 EPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSPNGK 97 Query: 360 LIAFTKFSG--EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD----- 411 +A+ G I + ++E L D + TWSP + F +K Sbjct: 98 WLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSDPSNE 157 Query: 412 --------------------GDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVG 444 G LY ++L + T + PA++ D +++ Sbjct: 158 EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIA 217 Query: 445 FM 446 F+ Sbjct: 218 FV 219 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 32/68 (47%), Gaps = 12/68 (17%) Query: 391 NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN--------TPAYAS 438 ++ P SP G+ + ++ + D + ++++ + ++ ++ I P ++ Sbjct: 35 DISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSP 94 Query: 439 DPQWVGFM 446 + +W+ ++ Sbjct: 95 NGKWLAYL 102 >gi|85375068|ref|YP_459130.1| hypothetical protein ELI_11205 [Erythrobacter litoralis HTCC2594] gi|84788151|gb|ABC64333.1| hypothetical protein ELI_11205 [Erythrobacter litoralis HTCC2594] Length = 1087 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 27/212 (12%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + S +G+ S+ D IY++ + R+ L + +SPD Sbjct: 69 IRTDEGTWMDVDVSPDGRTVAFSLLGD----IYTMPISGGTPTRIAEGLAWEVQPRFSPD 124 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFS 367 S+I F SDR G + +++M+++GSD+K ++++ P WSP G IA T S Sbjct: 125 GSRIAFTSDRGGGDNIWLMRTDGSDKKALTKEDFRLMHQPTWSPDGQFIAAKKHYTTGRS 184 Query: 368 GEKFAIGVMKKDGSQERLL------VEDSNLQAPTWSPSGRSLIFSRKKDG--------D 413 + + G L L P ++P G + F+R D Sbjct: 185 LGTGEVWLYHVSGGGGVKLVERPSETHQKELGEPIYAPDGSGIYFTRNDTSGPIFEYAQD 244 Query: 414 TGSKLYSI---DL-NGRNETLINTPAYASDPQ 441 + + ++ I DL +G T+++ A P Sbjct: 245 SNAGIFRIEKYDLESGERTTVVDGFGGAVRPT 276 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 64/362 (17%), Positives = 112/362 (30%), Gaps = 97/362 (26%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YAT 230 SRI F S+ + +M DG++ + LT +++ +P +SP+ Q +A Y T Sbjct: 126 SRIAFTSDRGGGDN----IWLMRTDGSDKKALTKEDFRLMHQPTWSPDGQFIAAKKHYTT 181 Query: 231 YDDEDILRVYLMDTRIDRAPKRIG----NFRSMILAPRFSSNGKRALISVQKD------- 279 V+L K + + + P ++ +G + Sbjct: 182 GRSLGTGEVWLYHVSGGGGVKLVERPSETHQKELGEPIYAPDGSGIYFTRNDTSGPIFEY 241 Query: 280 ------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 I DL+S + + + + SPD S I F + QL++ + Sbjct: 242 AQDSNAGIFRIEKYDLESGERTTVVDGFGGAVRPTPSPDGSAIAFVRRDKDNSQLWIKEF 301 Query: 334 NGSDQKRI----------SQDKEASYFDPVWSPQGDLIAF--------TKFSGEKF---- 371 +++ + + Y + W+ I F G F Sbjct: 302 ASGEERMLYADLDRDVQETWAVTGVYPNMDWTSDSRSIVFWSGGKLNRINRDGSGFTQIP 361 Query: 372 -----------------------------------------------AIGVMKKDGSQER 384 + V G Q R Sbjct: 362 FSVNDTRGIADAPHPIIPVASDTFTTNIPKFATVSPDGRRVVFETLGKLYVKNVGGGQPR 421 Query: 385 LLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQW 442 L S ++A P +S GRSL F R D G ++ D NG N T+ P + + P++ Sbjct: 422 RLTSGSAIEAWPAFSRDGRSLAFVRWTDDGLG-EIVVGDANGGNLRTVTRQPGHYASPRF 480 Query: 443 VG 444 Sbjct: 481 SP 482 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 41/240 (17%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP--------------- 263 ++ + + + + + + R+ + + P + + R + AP Sbjct: 332 WTSDSRSIVF--WSGGKLNRINRDGSGFTQIPFSVNDTRGIADAPHPIIPVASDTFTTNI 389 Query: 264 ----RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +G+R + +Y ++ RLT+ I ++S D + F Sbjct: 390 PKFATVSPDGRRVVFET----LGKLYVKNVGGGQPRRLTSGSAIEAWPAFSRDGRSLAFV 445 Query: 320 S-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------- 369 +G ++ V +NG + + +++ + Y P +SP G I F K SG Sbjct: 446 RWTDDGLGEIVVGDANGGNLRTVTR-QPGHYASPRFSPDGRTIVFEKRSGGFLTAPEYSA 504 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 I + G +L+ + AP + + +G G+ L S DL+G + Sbjct: 505 DPGIYRVSTSGGTPQLISRNGA--APQFGADNDRVF---MVEGGEGASLVSTDLSGEAKR 559 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 33/257 (12%) Query: 200 GANIRYLTPSRDQILFE-PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 GA IR + D+ + SP+ + VA++ D +Y M P RI + Sbjct: 61 GATIRQVPIRTDEGTWMDVDVSPDGRTVAFSLLGD-----IYTMPI-SGGTPTRIAEGLA 114 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV 317 + PRFS +G R + + +I+ + + + LT F + ++SPD I Sbjct: 115 WEVQPRFSPDGSRIAFTSDRGGGDNIWLMRTDGSDKKALTKEDFRLMHQPTWSPDGQFIA 174 Query: 318 ----FESDRE-GKEQLYVMQSNGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF-- 366 + + R G ++++ +G +R S+ + +P+++P G I FT+ Sbjct: 175 AKKHYTTGRSLGTGEVWLYHVSGGGGVKLVERPSETHQKELGEPIYAPDGSGIYFTRNDT 234 Query: 367 -----------SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 + F I + + +V+ PT SP G ++ F R+ Sbjct: 235 SGPIFEYAQDSNAGIFRIEKYDLESGERTTVVDGFGGAVRPTPSPDGSAIAFVRRD--KD 292 Query: 415 GSKLYSIDLNGRNETLI 431 S+L+ + E ++ Sbjct: 293 NSQLWIKEFASGEERML 309 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 44/302 (14%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 I ++G + + V+ + + M G + +PRFSP+ + Sbjct: 69 IRTDEGTWMDVDVSPDGRTVAFSLLGDIYTMPISGGTPTRIAEGL-AWEVQPRFSPDGSR 127 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQKDE 280 +A+ + D ++LM T ++ P +S +G+ + + Sbjct: 128 IAFTS-DRGGGDNIWLMRTDGSDKKALTKEDFRLMHQPTWSPDGQFIAAKKHYTTGRSLG 186 Query: 281 AMDIYSVDLQSNATERLTNTLFIN-----ISASYSPDSSQIVFESD-------------R 322 +++ + +L Y+PD S I F + Sbjct: 187 TGEVWLYHVSGGGGVKLVERPSETHQKELGEPIYAPDGSGIYFTRNDTSGPIFEYAQDSN 246 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G ++ ++ + D P SP G IAF + + + + + + Sbjct: 247 AGIFRIEKYDLESGERTTVV-DGFGGAVRPTPSPDGSAIAFVRRDKDNSQLWIKEFASGE 305 Query: 383 ERLLVED------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 ER+L D W+ RS++F G KL I+ +G T Sbjct: 306 ERMLYADLDRDVQETWAVTGVYPNMDWTSDSRSIVFWS------GGKLNRINRDGSGFTQ 359 Query: 431 IN 432 I Sbjct: 360 IP 361 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 24/227 (10%) Query: 198 RDGANIRYLTPSRDQILFEPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 D + S P+F SP+ ++V + T ++Y+ + P+R+ Sbjct: 371 ADAPHPIIPVASDTFTTNIPKFATVSPDGRRVVFETLG-----KLYVKNVG-GGQPRRLT 424 Query: 255 NFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + ++ P FS +G+ D +I D +T S +SPD Sbjct: 425 SGSAIEAWPAFSRDGRSLAFVRWTDDGLGEIVVGDANGGNLRTVTRQPGHYASPRFSPDG 484 Query: 314 SQIVFESDREG---------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 IVFE G +Y + ++G + IS++ A P + D + Sbjct: 485 RTIVFEKRSGGFLTAPEYSADPGIYRVSTSGGTPQLISRNGAA----PQFGADNDRVFMV 540 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + GE ++ G +R + SP+GR + F + + Sbjct: 541 E-GGEGASLVSTDLSGEAKRTHAKGELANDFQVSPNGRLVAFRQNYE 586 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------T 433 Q + ++ SP GR++ FS +Y++ ++G T I Sbjct: 65 RQVPIRTDEGTWMDVDVSPDGRTVAFS------LLGDIYTMPISGGTPTRIAEGLAWEVQ 118 Query: 434 PAYASDPQWVGF 445 P ++ D + F Sbjct: 119 PRFSPDGSRIAF 130 >gi|296107220|ref|YP_003618920.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidase [Legionella pneumophila 2300/99 Alcoy] gi|295649121|gb|ADG24968.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidase [Legionella pneumophila 2300/99 Alcoy] Length = 656 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 113/306 (36%), Gaps = 58/306 (18%) Query: 195 VMDRDGANIRYLTPSRD----QILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTR 245 V+ DG + L D Q + EP SP+ + VAY V+ + Sbjct: 13 VVFHDGWAGKRLPELNDLYRIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVD 72 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S P++S NGK K+ I+ +Q N +LT+ Sbjct: 73 SKSSQRITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGE 132 Query: 304 NISASYSPDSSQIVFE---SDRE------------------------GKEQLYVMQSNGS 336 ++SPDS++I F SD G++ LY+++ Sbjct: 133 VSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSK 192 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLVE- 388 +++ D + P WSP G IAF G+ + I +++ G++E L Sbjct: 193 AITQLT-DGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHF 251 Query: 389 DSNLQAP------TWSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLI-NTPAYA 437 + P +WSP + + R + ++L ID+N ++E +I + Sbjct: 252 PGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWY 311 Query: 438 SDPQWV 443 P+W Sbjct: 312 YKPKWS 317 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 50/326 (15%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 DI + G + + + + I + + D + + +T + D P++S Sbjct: 35 DISEPDLSPDGKWVAYTV-SQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWS 93 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD- 279 PN + +AY + ++ + + D ++ + + +S + R QK Sbjct: 94 PNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSD 153 Query: 280 --------------------------EAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +Y V+L+S A +LT+ ++SPD Sbjct: 154 PSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDG 213 Query: 314 SQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDP------VWSPQGDLI 361 I F + DR +Y+++ ++ S +P WSP I Sbjct: 214 KYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHFPGSDMNPDYDSNLSWSPDSSKI 273 Query: 362 AFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDT 414 A+ + + ++ + ++ + E+++ N P WS G+ + + Sbjct: 274 AYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWYYKPKWSQDGKFIY--ALIEESR 331 Query: 415 GSKLYSIDL-NGRNETLINTPAYASD 439 + L ID+ +G+ + L Y D Sbjct: 332 NTYLNRIDIHSGQIKKLTGGLRYDMD 357 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 41/182 (22%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD + + D +++ + + +RI+ +++S P WSP G Sbjct: 38 EPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSPNGK 97 Query: 360 LIAFTKFSG--EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD----- 411 +A+ G I + ++E L D + TWSP + F +K Sbjct: 98 WLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSDPSNE 157 Query: 412 --------------------GDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVG 444 G LY ++L + T + PA++ D +++ Sbjct: 158 EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIA 217 Query: 445 FM 446 F+ Sbjct: 218 FV 219 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 32/68 (47%), Gaps = 12/68 (17%) Query: 391 NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN--------TPAYAS 438 ++ P SP G+ + ++ + D + ++++ + ++ ++ I P ++ Sbjct: 35 DISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSP 94 Query: 439 DPQWVGFM 446 + +W+ ++ Sbjct: 95 NGKWLAYL 102 >gi|148359176|ref|YP_001250383.1| acylaminoacyl peptidase [Legionella pneumophila str. Corby] gi|148280949|gb|ABQ55037.1| acylaminoacyl peptidase [Legionella pneumophila str. Corby] Length = 656 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 113/306 (36%), Gaps = 58/306 (18%) Query: 195 VMDRDGANIRYLTPSRD----QILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTR 245 V+ DG + L D Q + EP SP+ + VAY V+ + Sbjct: 13 VVFHDGWAGKRLPELNDLYRIQDISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVD 72 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S P++S NGK K+ I+ +Q N +LT+ Sbjct: 73 SKSSQRITFAEDSSSSLPKWSPNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGE 132 Query: 304 NISASYSPDSSQIVFE---SDRE------------------------GKEQLYVMQSNGS 336 ++SPDS++I F SD G++ LY+++ Sbjct: 133 VSDFTWSPDSNRIAFIAQKSDPSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSK 192 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLVE- 388 +++ D + P WSP G IAF G+ + I +++ G++E L Sbjct: 193 AITQLT-DGNHDEYLPAWSPDGKYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHF 251 Query: 389 DSNLQAP------TWSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLI-NTPAYA 437 + P +WSP + + R + ++L ID+N ++E +I + Sbjct: 252 PGSDMNPDYDSNLSWSPDSSKIAYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWY 311 Query: 438 SDPQWV 443 P+W Sbjct: 312 YKPKWS 317 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 50/326 (15%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 DI + G + + + + I + + D + + +T + D P++S Sbjct: 35 DISEPDLSPDGKWVAYTV-SQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWS 93 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD- 279 PN + +AY + ++ + + D ++ + + +S + R QK Sbjct: 94 PNGKWLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSD 153 Query: 280 --------------------------EAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +Y V+L+S A +LT+ ++SPD Sbjct: 154 PSNEEEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDG 213 Query: 314 SQIVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDP------VWSPQGDLI 361 I F + DR +Y+++ ++ S +P WSP I Sbjct: 214 KYIAFVTKRGKDPDRHFNYDIYLIEPKSGAKEHQLTHFPGSDMNPDYDSNLSWSPDSSKI 273 Query: 362 AFTKFSGEKF------AIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDT 414 A+ + + ++ + ++ + E+++ N P WS G+ + + Sbjct: 274 AYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWYYKPKWSQDGKFIY--ALIEESR 331 Query: 415 GSKLYSIDL-NGRNETLINTPAYASD 439 + L ID+ +G+ + L Y D Sbjct: 332 NTYLNRIDIHSGQIKKLTGGLRYDMD 357 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 41/182 (22%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SPD + + D +++ + + +RI+ +++S P WSP G Sbjct: 38 EPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSPNGK 97 Query: 360 LIAFTKFSG--EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD----- 411 +A+ G I + ++E L D + TWSP + F +K Sbjct: 98 WLAYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSDPSNE 157 Query: 412 --------------------GDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVG 444 G LY ++L + T + PA++ D +++ Sbjct: 158 EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKYIA 217 Query: 445 FM 446 F+ Sbjct: 218 FV 219 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 32/68 (47%), Gaps = 12/68 (17%) Query: 391 NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN--------TPAYAS 438 ++ P SP G+ + ++ + D + ++++ + ++ ++ I P ++ Sbjct: 35 DISEPDLSPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSP 94 Query: 439 DPQWVGFM 446 + +W+ ++ Sbjct: 95 NGKWLAYL 102 >gi|114570230|ref|YP_756910.1| amidohydrolase [Maricaulis maris MCS10] gi|114340692|gb|ABI65972.1| amidohydrolase [Maricaulis maris MCS10] Length = 1062 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 27/208 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ S +G+ D DIY++ + A +++ L I +SPD SQI Sbjct: 48 EGTWMSLDVSPDGQTIAF----DMLGDIYTMPVSGGAATNVSSGLPWEIQPRFSPDGSQI 103 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKF 371 F SDR G + +++M +G + ++++++ + W P G IA T S Sbjct: 104 AFTSDRAGGDNIWIMDVDGGNVRQLTEESFRLLNNAAWHPSGRYIAARKHFTTTRSAGTG 163 Query: 372 AIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRSLIFSRK--------KDGDTGSK 417 I G LVE N P +SP GR L ++ D+ + Sbjct: 164 EIWFYHVLGGGGVQLVERPNENFQKELGEPVFSPDGRYLYYTMNVTSGNSFIYAQDSNTN 223 Query: 418 LYSIDL----NGRNETLINTPAYASDPQ 441 L+ I G +T ++ A P Sbjct: 224 LFDIRRYDMETGETDTAVSGAGGAVRPA 251 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 38/276 (13%) Query: 198 RDGANIRYLTPSRDQILFEPRF-----SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 D AN T + D + E + SP+ Q +A+ D +Y M A Sbjct: 30 WDVANPPLETRAIDINVTEGTWMSLDVSPDGQTIAFDMLGD-----IYTMPV-SGGAATN 83 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSP 311 + + + PRFS +G + + + +I+ +D+ +LT F + +A++ P Sbjct: 84 VSSGLPWEIQPRFSPDGSQIAFTSDRAGGDNIWIMDVDGGNVRQLTEESFRLLNNAAWHP 143 Query: 312 DSSQIV----FESDRE-GKEQLYVMQSNGSDQKRISQDKEASY----FDPVWSPQGDLIA 362 I F + R G +++ G ++ + ++ +PV+SP G + Sbjct: 144 SGRYIAARKHFTTTRSAGTGEIWFYHVLGGGGVQLVERPNENFQKELGEPVFSPDGRYLY 203 Query: 363 FTKF-------------SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 +T + F I + + V P SP GR + F R Sbjct: 204 YTMNVTSGNSFIYAQDSNTNLFDIRRYDMETGETDTAVSGAGGAVRPAPSPDGRYMAFIR 263 Query: 409 KKDGDTGSKLYSIDLN-GRNETLINTPAYASDPQWV 443 + S L+ DL+ G L+ T W Sbjct: 264 RD--RIRSGLWIKDLDTGEERRLVETVDQDMQETWG 297 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 26/211 (12%) Query: 216 EPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGK 270 PRF SP+ ++ Y T + P+R+ + P +S++G+ Sbjct: 364 MPRFATASPDGSQIVYETLGQ------LWVRAADGGEPRRLTRDDGTRREMMPTWSADGR 417 Query: 271 RALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----- 324 + D+A+ I ++ ++ LT+ + +SPD +VFE G Sbjct: 418 TIAFATWDDDALGSIRTISVRGGRERVLTSQPGHYRNPRFSPDGETVVFEKGSGGYLTAP 477 Query: 325 ----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 E +Y + ++G D R++ DP + D I F G + + +G Sbjct: 478 EWSENEGVYRVAADGGDMVRVTDSG----SDPHFGASNDRI-FVTRGGGGARLVSIDLNG 532 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +QER V + SP G + F + D Sbjct: 533 NQERTHVTGDLVTGYQVSPDGSHVAFRQNYD 563 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 60/364 (16%), Positives = 117/364 (32%), Gaps = 99/364 (27%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YAT 230 S+I F S+ + +MD DG N+R LT ++L + P+ + +A + T Sbjct: 101 SQIAFTSDRAGGDN----IWIMDVDGGNVRQLTEESFRLLNNAAWHPSGRYIAARKHFTT 156 Query: 231 YDDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNGKRALISV---------- 276 ++ + + NF+ + P FS +G+ ++ Sbjct: 157 TRSAGTGEIWFYHVLGGGGVQLVERPNENFQKELGEPVFSPDGRYLYYTMNVTSGNSFIY 216 Query: 277 ---QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 DI D+++ T+ + + + SPD + F + L++ Sbjct: 217 AQDSNTNLFDIRRYDMETGETDTAVSGAGGAVRPAPSPDGRYMAFIRRDRIRSGLWIKDL 276 Query: 334 NGSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEK------------- 370 + +++R+ + Y + W P + + G + Sbjct: 277 DTGEERRLVETVDQDMQETWGVTGMYPNMDWMPDSGSLVYWADGGIQRVDIETGAVTNIP 336 Query: 371 FAI----------------------------GVMKKDGSQ------------------ER 384 F+I DGSQ R Sbjct: 337 FSITDTRDVIDPPRPSVEVAPDTFQTRMPRFATASPDGSQIVYETLGQLWVRAADGGEPR 396 Query: 385 LLVED---SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDP 440 L D PTWS GR++ F+ D GS + +I + G E ++ + P + +P Sbjct: 397 RLTRDDGTRREMMPTWSADGRTIAFATWDDDALGS-IRTISVRGGRERVLTSQPGHYRNP 455 Query: 441 QWVG 444 ++ Sbjct: 456 RFSP 459 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 99/286 (34%), Gaps = 53/286 (18%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQIL--------FEPR--FSPNQQKVAYATYDDE 234 I++ L + D D R L + DQ + P + P+ + Y + D Sbjct: 263 RRDRIRSGLWIKDLDTGEERRLVETVDQDMQETWGVTGMYPNMDWMPDSGSLVY--WADG 320 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSM----------------ILAPRF---SSNGKRALIS 275 I RV + + P I + R + PRF S +G + + Sbjct: 321 GIQRVDIETGAVTNIPFSITDTRDVIDPPRPSVEVAPDTFQTRMPRFATASPDGSQIVYE 380 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFI--NISASYSPDSSQIVF-ESDREGKEQLYVMQ 332 ++ RLT + ++S D I F D + + + Sbjct: 381 T----LGQLWVRAADGGEPRRLTRDDGTRREMMPTWSADGRTIAFATWDDDALGSIRTIS 436 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------KFAIGVMKKDGSQE 383 G ++ ++ + Y +P +SP G+ + F K SG + + DG Sbjct: 437 VRGGRERVLTS-QPGHYRNPRFSPDGETVVFEKGSGGYLTAPEWSENEGVYRVAADGGDM 495 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + + + P + S + +R G G++L SIDLNG E Sbjct: 496 VRVTDSGSD--PHFGASNDRIFVTR---GGGGARLVSIDLNGNQER 536 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 113/323 (34%), Gaps = 63/323 (19%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRY---------LTPSRDQILFEPRFSPNQQ 224 + R L+ + +V SG + + +IR S P SP+ + Sbjct: 198 DGRYLYYTMNVTSGNSFIYAQDSNTNLFDIRRYDMETGETDTAVSGAGGAVRPAPSPDGR 257 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALI 274 +A+ D +++ D + + M + + + Sbjct: 258 YMAFIRRD-RIRSGLWIKDLDTGEERRLVETVDQDMQETWGVTGMYPNMDWMPDSGSLVY 316 Query: 275 SVQKDEAMDIYSVDLQSNATERL----TNTL------------FINIS----ASY---SP 311 I VD+++ A + T+T + + SP Sbjct: 317 WADGG----IQRVDIETGAVTNIPFSITDTRDVIDPPRPSVEVAPDTFQTRMPRFATASP 372 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEK 370 D SQIV+E+ QL+V ++G + +R+++D P WS G IAF + + Sbjct: 373 DGSQIVYET----LGQLWVRAADGGEPRRLTRDDGTRREMMPTWSADGRTIAFATWDDDA 428 Query: 371 F-AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSI 421 +I + G +ER+L + + P +SP G +++F + G +Y + Sbjct: 429 LGSIRTISVRGGRERVLTSQPGHYRNPRFSPDGETVVFEKGSGGYLTAPEWSENEGVYRV 488 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 +G + + SDP + Sbjct: 489 AADGGDMVRVTDSG--SDPHFGA 509 >gi|118589526|ref|ZP_01546931.1| hypothetical protein SIAM614_03780 [Stappia aggregata IAM 12614] gi|118437612|gb|EAV44248.1| hypothetical protein SIAM614_03780 [Stappia aggregata IAM 12614] Length = 276 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 18/206 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK- 278 SP+ + + + +Y + P+RI + +S +G+ ++ Sbjct: 73 SPDGSMLVVSDATEAGESCIYTLPV-TGGEPRRITSRTPSYWH-GWSPDGETLAYVGKRP 130 Query: 279 --DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 ++S+ L ++T Y+PD I F +R G QL+ ++ +GS Sbjct: 131 ETGGTFQVFSIGLDGGEERQITREFDHCDGPDYTPDGKWIWFNGERAGSVQLWRVRPDGS 190 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKKDGSQERLLVE 388 +++++D+ ++F P SP G +A+ + + +M +G R+L+ Sbjct: 191 CLQQMTKDERVNWF-PHPSPDGKSVAYLAYEAGTTGHPAERTVELRLMPAEGGSPRILLS 249 Query: 389 ----DSNLQAPTWSPSGRSLIFSRKK 410 L P+W+P R + R + Sbjct: 250 LFGGQGTLNVPSWAPDSRRFAYMRYE 275 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 96/255 (37%), Gaps = 21/255 (8%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + ++ L P ++P+ A + RV L D + + Sbjct: 16 TVLYETERHLEAPNWTPDG--AALIVNGGGRLYRVALDDPGLLEIDTGFATALNNDHG-- 71 Query: 265 FSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR- 322 S +G ++S + IY++ + R+T + + +SPD + + R Sbjct: 72 LSPDGSMLVVSDATEAGESCIYTLPVTGGEPRRIT-SRTPSYWHGWSPDGETLAYVGKRP 130 Query: 323 --EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 G Q++ + +G ++++I+++ + P ++P G I F + ++ DG Sbjct: 131 ETGGTFQVFSIGLDGGEERQITREFDHCD-GPDYTPDGKWIWFNGERAGSVQLWRVRPDG 189 Query: 381 SQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGS------KLYSIDLNGRNETLI-- 431 S + + +D P SP G+S+ + + G TG +L + G + ++ Sbjct: 190 SCLQQMTKDERVNWFPHPSPDGKSVAYLAYEAGTTGHPAERTVELRLMPAEGGSPRILLS 249 Query: 432 --NTPAYASDPQWVG 444 + P W Sbjct: 250 LFGGQGTLNVPSWAP 264 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 77/205 (37%), Gaps = 15/205 (7%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +L VS++ +G + + G R +T + +SP+ + +AY Sbjct: 75 DGSMLVVSDATEAGESC--IYTLPVTGGEPRRITSRTPS--YWHGWSPDGETLAYVGKRP 130 Query: 234 EDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 E + +D +R I P ++ +GK + ++ ++ ++ V + Sbjct: 131 ETGGTFQVFSIGLDGGEERQITREFDHCDGPDYTPDGKWIWFNGERAGSVQLWRVRPDGS 190 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKE--------QLYVMQSNGSDQKRI--S 342 +++T +N SPD + + + G +L +M + G + + Sbjct: 191 CLQQMTKDERVNWFPHPSPDGKSVAYLAYEAGTTGHPAERTVELRLMPAEGGSPRILLSL 250 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFS 367 + + P W+P A+ ++ Sbjct: 251 FGGQGTLNVPSWAPDSRRFAYMRYE 275 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 14/172 (8%) Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 + ++D+++ L T + +++PD + ++ G +LY + + I Sbjct: 5 LATIDVETGTETVLYETERHLEAPNWTPDGAALI----VNGGGRLYRVALDDPGLLEIDT 60 Query: 344 DKEASYFDPV-WSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 + + SP G ++ + + I + G + R + + WSP G Sbjct: 61 GFATALNNDHGLSPDGSMLVVSDATEAGESCIYTLPVTGGEPRRITSRTPSYWHGWSPDG 120 Query: 402 RSLIFSRKKDGDTGS-KLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 +L + K+ G+ +++SI L+G E I P Y D +W+ F Sbjct: 121 ETLAYVGKRPETGGTFQVFSIGLDGGEERQITREFDHCDGPDYTPDGKWIWF 172 >gi|319647634|ref|ZP_08001852.1| YuxL protein [Bacillus sp. BT1B_CT2] gi|317389975|gb|EFV70784.1| YuxL protein [Bacillus sp. BT1B_CT2] Length = 653 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 47/265 (17%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNG 269 + +P++SP+ K+AY + Y I K+ + PR+S +G Sbjct: 16 ITDPQYSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQHPRWSPDG 75 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------ 317 K + ++E IY + ++T+ + +SPD ++ Sbjct: 76 KNLAFTSNREETAQIYVISAAGGEARKVTDIPYDVSQPEWSPDGKTLLCSVKLTKEESVD 135 Query: 318 -------------------FESD-----REGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +++D R QL ++Q + K+++ D E +F Sbjct: 136 DEKKTEIEDHEPLEVDSLSYKADGQGFKRGKYTQLVLVQVETGEMKQLT-DLERDHFSHA 194 Query: 354 WSPQGDLIAFTKFSGEKF--AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKK 410 +SP GD IAF + + +M + L ++ + ++SP G+ L F + Sbjct: 195 FSPCGDQIAFCANQTDMRVNDVYLMNLSTGDLKRLTGQNGIFSSLSFSPDGKHLAFIGNE 254 Query: 411 DGDTGSKL---YSIDLNGRNETLIN 432 + L + D+ T + Sbjct: 255 KEYQNATLDKAWLYDIETGKLTCLT 279 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 78/265 (29%), Gaps = 58/265 (21%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA------------------------ 227 + V+ G R +T + +P +SP+ + + Sbjct: 89 QIYVISAAGGEARKVTD-IPYDVSQPEWSPDGKTLLCSVKLTKEESVDDEKKTEIEDHEP 147 Query: 228 -----------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + ++ L+ K++ + + FS G + Sbjct: 148 LEVDSLSYKADGQGFKRGKYTQLVLVQVETGEM-KQLTDLERDHFSHAFSPCGDQIAFCA 206 Query: 277 QKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-----LY 329 + + D+Y ++L + +RLT I S S+SPD + F + + + + Sbjct: 207 NQTDMRVNDVYLMNLSTGDLKRLTGQNGIFSSLSFSPDGKHLAFIGNEKEYQNATLDKAW 266 Query: 330 VMQSNGSDQKRISQDKEASYFD--------------PVWSPQGDLIAFTKFSGEKFAIGV 375 + +++ + D P W+ G+ I Sbjct: 267 LYDIETGKLTCLTEMLDVHLSDAVAGDSLVGGVLPKPAWTKDGNGFYVIGSDQGSTGIYY 326 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPS 400 + +G + +E ++ + P Sbjct: 327 ISIEGLAYPVRLEKEHVNGFSLHPD 351 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%) Query: 348 SYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 S DP +SP G IA+ K I + ++ Q P WSP Sbjct: 15 SITDPQYSPDGAKIAYVQTKVNEKQDSYDSHIMIYDREKQASVQWTFGKGRNQHPRWSPD 74 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 G++L F+ + + +++Y I G + + P S P+W Sbjct: 75 GKNLAFTSNR--EETAQIYVISAAGGEARKVTDIPYDVSQPEWSP 117 >gi|295401287|ref|ZP_06811259.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976694|gb|EFG52300.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 675 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 89/238 (37%), Gaps = 55/238 (23%) Query: 260 ILAPRFSSNGKRALIS-----VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + P+FS +GK+ + +++ ++ + L + ++ T + +SPD Sbjct: 30 VSDPQFSPDGKKVIFVQKTIDHEREYRSHLFLLSLADGSVKQWTFGKSKDTFPRWSPDGK 89 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTK-------- 365 I F S+R GK Q++ + ++G + ++++ K WSP G LIA T Sbjct: 90 TIAFLSNRSGKPQIWRLPADGGEARQLTFLKNG-VRQLCWSPNGRFLIALTSLGKEETLK 148 Query: 366 --------------------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 ++ + + + + + L + + Sbjct: 149 EHEEKNKNEKEKRKLTPLIVERLQYKSDAAGFRDDKQDVLIRIDAETGEMQALTN-GDDE 207 Query: 394 APTW--SPSGRSLIFSRKKDGD----TGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 ++ SP G+++ F+ + D ++ +D++ G+ + + + + W Sbjct: 208 IISFAISPDGQTVAFAANRSEDPDFTFTRDIFLLDIDSGKTTKITDGNGFFASLSWSP 265 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 109/355 (30%), Gaps = 80/355 (22%) Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + K A H +SD S G+K F + + S + SL D Sbjct: 12 MKKTTRGIAAEDLFRIHFVSDP-QFSPDGKKVIFVQKTIDHEREYRSHLFLLSL----AD 66 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G+ ++ PR+SP+ + +A+ + +++ ++ Sbjct: 67 GSVKQWTF--GKSKDTFPRWSPDGKTIAFLSNRSGKPQ--IWRLPADGGEARQLTFLKNG 122 Query: 260 ILAPRFSSNGKRA-----------------------------------------LISVQK 278 + +S NG+ + Sbjct: 123 VRQLCWSPNGRFLIALTSLGKEETLKEHEEKNKNEKEKRKLTPLIVERLQYKSDAAGFRD 182 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQ 332 D+ + +D ++ + LTN IS + SPD + F ++R ++++ Sbjct: 183 DKQDVLIRIDAETGEMQALTNGDDEIISFAISPDGQTVAFAANRSEDPDFTFTRDIFLLD 242 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLV 387 + +I+ D + WSP G ++A + ++R L Sbjct: 243 IDSGKTTKIT-DGNGFFASLSWSPDGKMLAAIGHELEYLGATLNRVWTFDIPSGEKRALT 301 Query: 388 EDSNLQ------------APT----WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + ++ AP+ W+ G L F + G LY + L+G Sbjct: 302 ANWDVHVGDAMVGDMHSGAPSPGLIWNKEGNGLYFLASERGRV--NLYHVALDGT 354 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 67/312 (21%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK-VAYATYDDE------------ 234 K + + DG R LT ++ + +SPN + +A + E Sbjct: 98 SGKPQIWRLPADGGEARQLTFLKNGVRQL-CWSPNGRFLIALTSLGKEETLKEHEEKNKN 156 Query: 235 --------------------------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 D V + + + N I++ S + Sbjct: 157 EKEKRKLTPLIVERLQYKSDAAGFRDDKQDVLIRIDAETGEMQALTNGDDEIISFAISPD 216 Query: 269 GKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 G+ + + E D I+ +D+ S T ++T+ S S+SPD + Sbjct: 217 GQTVAFAANRSEDPDFTFTRDIFLLDIDSGKTTKITDGNGFFASLSWSPDGKMLAAIGHE 276 Query: 323 -----EGKEQLYVMQSNGSDQKRISQDKE--------ASYFDPVWSP------QGDLIAF 363 +++ +++ ++ + + SP +G+ + F Sbjct: 277 LEYLGATLNRVWTFDIPSGEKRALTANWDVHVGDAMVGDMHSGAPSPGLIWNKEGNGLYF 336 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + + DG+ ++ D +L + P + + D LY++ L Sbjct: 337 LASERGRVNLYHVALDGTITPSVIGDFHLYGLSIHP-HHHMAVAAISDPTHIGDLYAVSL 395 Query: 424 -NGRNETLINTP 434 +GR + L N Sbjct: 396 RDGRRDKLTNAN 407 >gi|226228052|ref|YP_002762158.1| putative S9C family serine peptidase [Gemmatimonas aurantiaca T-27] gi|226091243|dbj|BAH39688.1| putative S9C family serine peptidase [Gemmatimonas aurantiaca T-27] Length = 688 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 107/301 (35%), Gaps = 64/301 (21%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + ++S+ +M+ DG R+L + ++SP ++A+ + ++++ Sbjct: 76 NDRRESSVWIMNADGTKNRFLVKGSNA-----KWSPEGSRIAFIANGEPSGQQIWVRYMD 130 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISV----------------------------- 276 + A +I +S +G + Sbjct: 131 AEGATTQITRLTESPGDVEWSPDGTTLAFGMLVRQNDEWRIAMPAAPKGAKWTEPPRVVS 190 Query: 277 -----------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-- 323 ++ +++V ++T + + ++ PD ++F S R Sbjct: 191 KVKYRADRQGFLENGLRQLFTVPADGGTPRQITTGDWASNGTTWMPDGKALLFTSLRTED 250 Query: 324 -----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-----EKFAI 373 + +Y + D +++ K +PV SP G IA+T + + A+ Sbjct: 251 SEYAWRESDIYKVDIASGDITALTKRK-GPDNNPVPSPDGKYIAYTGYDSTDATWKDAAM 309 Query: 374 GVMKKDGSQERLLVEDSNLQAPT---WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 +M +G R+L E ++P+ WSP G + F+ + +G LY + L G + Sbjct: 310 YIMDANGGNVRVLTE-KLDRSPSGMMWSPDGLGVYFNVENEGSR--NLYHVSLKGDVRQV 366 Query: 431 I 431 Sbjct: 367 T 367 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 93/292 (31%), Gaps = 74/292 (25%) Query: 217 PRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P SP+ +++ Y +D V++M+ + + + ++S G R Sbjct: 56 PALSPDGKQILYTRTWTDQLNDRRESSVWIMNADGTKNRFLV---KGSN--AKWSPEGSR 110 Query: 272 ALISVQK---DEAMDIYSVDLQS--NATERLTNTLFINISASYSPDSSQIVF-------- 318 + + + +D + RLT + ++ +SPD + + F Sbjct: 111 IAFIANGEPSGQQIWVRYMDAEGATTQITRLTESPG-DVE--WSPDGTTLAFGMLVRQND 167 Query: 319 ---------------------------ESDRE-----GKEQLYVMQSNGSDQKRISQDKE 346 +DR+ G QL+ + ++G ++I+ + Sbjct: 168 EWRIAMPAAPKGAKWTEPPRVVSKVKYRADRQGFLENGLRQLFTVPADGGTPRQITT-GD 226 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFA-------IGVMKKDGSQERLLVED-SNLQAPTWS 398 + W P G + FT E I + L + P S Sbjct: 227 WASNGTTWMPDGKALLFTSLRTEDSEYAWRESDIYKVDIASGDITALTKRKGPDNNPVPS 286 Query: 399 PSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASDPQ---WVG 444 P G+ + ++ D K +Y +D NG N ++ T P W Sbjct: 287 PDGKYIAYTGYDSTDATWKDAAMYIMDANGGNVRVL-TEKLDRSPSGMMWSP 337 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 94/248 (37%), Gaps = 68/248 (27%) Query: 260 ILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDS 313 + AP S +GK+ L + + ++ ++ ++ L +A +SP+ Sbjct: 53 VAAPALSPDGKQILYTRTWTDQLNDRRESSVWIMNADGTKNRFLVKGS----NAKWSPEG 108 Query: 314 SQIVFESDRE-GKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSG 368 S+I F ++ E +Q++V M + G+ +I++ E S D WSP G +AF Sbjct: 109 SRIAFIANGEPSGQQIWVRYMDAEGA-TTQITRLTE-SPGDVEWSPDGTTLAFGMLVRQN 166 Query: 369 EKFAIGV--------------------------------------MKKDGSQERLLVE-D 389 +++ I + + DG R + D Sbjct: 167 DEWRIAMPAAPKGAKWTEPPRVVSKVKYRADRQGFLENGLRQLFTVPADGGTPRQITTGD 226 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGD-----TGSKLYSIDLNGRNETLI-------NTPAYA 437 TW P G++L+F+ + D S +Y +D+ + T + N P + Sbjct: 227 WASNGTTWMPDGKALLFTSLRTEDSEYAWRESDIYKVDIASGDITALTKRKGPDNNPVPS 286 Query: 438 SDPQWVGF 445 D +++ + Sbjct: 287 PDGKYIAY 294 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 28/144 (19%) Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY---FDPVWSPQGDLIAFTK------ 365 V+ S G+ + R++ ++ P SP G I +T+ Sbjct: 23 TFVWSSSASGQS-------ATPPKDRLTIADYFNWEDVAAPALSPDGKQILYTRTWTDQL 75 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS--IDL 423 + ++ +M DG++ R LV+ SN + WSP G + F +G +++ +D Sbjct: 76 NDRRESSVWIMNADGTKNRFLVKGSNAK---WSPEGSRIAFIAN-GEPSGQQIWVRYMDA 131 Query: 424 NGRN---ETLINTPAYASDPQWVG 444 G L +P +W Sbjct: 132 EGATTQITRLTESPGDV---EWSP 152 >gi|226225661|ref|YP_002759767.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] gi|226088852|dbj|BAH37297.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] Length = 691 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 89/289 (30%), Gaps = 63/289 (21%) Query: 219 FSPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +P+ +++ Y D L D + R S APR+S +G + + Sbjct: 50 IAPDGRQLVYVRQNVDSLRDKRLRTLWTVNADGSAHRQLLPGSNETAPRWSPDGTQLVFR 109 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--------------- 320 ++ ++++ + S A +RLT+ + A++SPD QI F S Sbjct: 110 SDREGGAQLWTMQVASGALKRLTSVARGPLGAAWSPDGKQIAFTSLVPEPALSIAQQIAP 169 Query: 321 -------------------------DREGKEQLYVMQSNGSDQKRISQDKEA-------S 348 G QL+V+ +++++ Sbjct: 170 PAGATWAPPARAFDKLIYRFDGAGELERGWSQLFVVDVASGTTRQLTKGAYHVGGGNGRG 229 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAI--------GVMKKDGSQERLLVEDSNLQAPTWSPS 400 P WSP G I + + I V G L P SP Sbjct: 230 SGVPSWSPDGKTILISANRRPDYEIESTDTEVMAVDVVSGDVRALTTRFGPDNRPMMSPD 289 Query: 401 GRSLIFSRKKD---GDTGSKLYSIDLNGRNETLINT--PAYASDPQWVG 444 G+ + F+ D G +LY + +G + P W Sbjct: 290 GQWIAFTGYDDRRLGYQNHELYVMRADGSARRSLTASYDRSVGSPVWAP 338 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 52/315 (16%), Positives = 98/315 (31%), Gaps = 70/315 (22%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 T + + L G ++ V GA R + +R +SP+ +++ Sbjct: 95 TAPRWSPDGTQLVFRSDREGGAQLWTMQVAS--GALKRLTSVARGP--LGAAWSPDGKQI 150 Query: 227 AYATYDDEDILRV--------------------------------------YLMDTRIDR 248 A+ + E L + + Sbjct: 151 AFTSLVPEPALSIAQQIAPPAGATWAPPARAFDKLIYRFDGAGELERGWSQLFVVDVASG 210 Query: 249 APKRIGNFRSMILA--------PRFSSNGKRALISVQKDEAMDI-------YSVDLQSNA 293 +++ + P +S +GK LIS + +I +VD+ S Sbjct: 211 TTRQLTKGAYHVGGGNGRGSGVPSWSPDGKTILISANRRPDYEIESTDTEVMAVDVVSGD 270 Query: 294 TERLTNTLFINISASYSPDSSQIVFESD---REG--KEQLYVMQSNGSDQKRISQDKEAS 348 LT + SPD I F R G +LYVM+++GS ++ ++ + S Sbjct: 271 VRALTTRFGPDNRPMMSPDGQWIAFTGYDDRRLGYQNHELYVMRADGSARRSLTASYDRS 330 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-------EDSNLQAPTWSPSG 401 PVW+P + + + +G + G R + + S +G Sbjct: 331 VGSPVWAPDSRGLYVELNNEGETQVGYVPLAGGVPRTIARHLGNGQTAYEGSGYSVSRAG 390 Query: 402 RSLIFSRKKDGDTGS 416 R + F + G Sbjct: 391 R-VAFVTSRGNHPGG 404 Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 24/191 (12%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILR----VYLMDTRIDRAPKRIGNFRSMILA 262 +R P SP+ Q +A+ YDD + +Y+M ++ + + Sbjct: 274 LTTRFGPDNRPMMSPDGQWIAFTGYDDRRLGYQNHELYVMRADGSARRSLTASYDRSVGS 333 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-----INISASYSPDSSQIV 317 P ++ + + + + + + V L + L S + ++ Sbjct: 334 PVWAPDSRGLYVELNNEGETQVGYVPLAGGVPRTIARHLGNGQTAYEGSGYSVSRAGRVA 393 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV--------WSPQGDLIAFTKFSGE 369 F + R + G ++ A W+P + G Sbjct: 394 FVTSRGNHPGGVATAAIGDSSPKVLAGMNAVLLANARMGEVEMFWTP-------SSHDGW 446 Query: 370 KFAIGVMKKDG 380 + ++K G Sbjct: 447 RVQSWLIKPPG 457 >gi|332530720|ref|ZP_08406649.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624] gi|332039810|gb|EGI76207.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624] Length = 638 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 108/268 (40%), Gaps = 44/268 (16%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +P Q R+Y+ + + + + ++ FSS+G+ + + ++D Sbjct: 27 APATQSPLLLNRIGPSASRLYIANAD-GSNERLLIDSGTLDYNASFSSDGQWIVFTSERD 85 Query: 280 E--AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQSNGS 336 ++Y ERLT++ ++ +A +SPD S++ F S R+G ++V+ Sbjct: 86 GLGNSNLYRARADGTQVERLTDSPAVDDAAVFSPDGSKVAFVSTRDGFLANIWVLDLQTR 145 Query: 337 DQKRIS----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA-------------- 372 + ++ Q+ + +F P WSP G +AF+ ++ Sbjct: 146 KLRNLTGIKGVQADDLQNSPSGFFRPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQEL 205 Query: 373 -IGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDT------------GSK 417 I V++ DG+ R + + +P WS G+ ++F T S+ Sbjct: 206 SIYVIRVDGTGLRRVASRKDHCLGSPRWSGDGKRIVFYETLAEYTYWVLRPDLLLKIDSQ 265 Query: 418 LYSIDLN-GRNETLINTPAYASDPQWVG 444 + S+D++ G P + PQ++G Sbjct: 266 IVSVDVDSGARTVHTEGPGFKISPQYIG 293 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 69/338 (20%), Positives = 114/338 (33%), Gaps = 85/338 (25%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + L + + DG+N R L S + + FS + Q + + + D Sbjct: 40 GPSASRLYIANADGSNERLLIDSG-TLDYNASFSSDGQWIVFTSERDGLGNSNLYRARAD 98 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNATERLT------- 298 +R+ + ++ A FS +G + +D +I+ +DLQ+ LT Sbjct: 99 GTQVERLTDSPAVDDAAVFSPDGSKVAFVSTRDGFLANIWVLDLQTRKLRNLTGIKGVQA 158 Query: 299 ----NTLFINISASYSPDSSQIVFESDRE----------GKEQ-----LYVMQSNGSDQK 339 N+ S+SPD + F SDR G E +YV++ +G+ + Sbjct: 159 DDLQNSPSGFFRPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQELSIYVIRVDGTGLR 218 Query: 340 RISQDKEASYFDPVWSPQGDLIAF-----------------------------------T 364 R++ K+ P WS G I F Sbjct: 219 RVASRKDHCLGSPRWSGDGKRIVFYETLAEYTYWVLRPDLLLKIDSQIVSVDVDSGARTV 278 Query: 365 KFSGEKFAIG---------VMKKDGSQE---------RLLVEDSNLQAPTWSPSGRSLIF 406 G F I V ++ G R +V+ L+ P WS GR +++ Sbjct: 279 HTEGPGFKISPQYIGNDEIVYRRKGGPAEGLYSTVPGRPVVKLEGLRTPAWSTDGRRVVY 338 Query: 407 --SRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQ 441 + LYS D GR + PA+A D Sbjct: 339 EKFTWRGWTQNQALYSWDA-GRPYRYTDVWPAFAKDGT 375 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 111/313 (35%), Gaps = 57/313 (18%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+++ + +L D G RY P F+ + V A +D Sbjct: 335 RVVYEKFTWRGWTQNQALYSWDA-GRPYRYT-------DVWPAFAKDGTMVLTAKGEDSS 386 Query: 236 I----------LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI------SVQKD 279 + RVY + + P + + P +S +G+ + + + Sbjct: 387 VDIMRPDGSARRRVYDVSRQSGLDPVLVKRGLAGAFFPVWSPDGEWIVFGVGEWFTQRGR 446 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFE-------SDREGKEQLYVM 331 + V + E+LT+ N SYS D ++VF S G L V+ Sbjct: 447 GRAKLMRVRRDGSGLEQLTDDSIFNAGFPSYSADGKEVVFRIANEDPKSASLGG--LAVL 504 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERL 385 +RI+ P+WSP G I F + F + ++ DGS + Sbjct: 505 NLETRQIRRITA---GYDNMPIWSPDGSRILFNRGVRNPNSIWSNFDLYTVRPDGSDLQR 561 Query: 386 LV-EDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLIN 432 L ++ P W+P G+ ++++ G +L+ +D +GRN+ I Sbjct: 562 LTSHPASDGHPVWTPDGKQILYNSGMAGYRDEACHYDQTFQPYGQLFVMDADGRNKRQIT 621 Query: 433 TPAY-ASDPQWVG 444 + S PQ+V Sbjct: 622 DSIWEDSTPQYVP 634 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 113/337 (33%), Gaps = 84/337 (24%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + S+ V+ DG +R + +D L PR+S + +++ + E V D Sbjct: 198 GWEHTQELSIYVIRVDGTGLRRVASRKDHCLGSPRWSGDGKRIVFYETLAEYTYWVLRPD 257 Query: 244 TRIDRAPKRI------------GNFRSMILA----------------------------- 262 + + + ++ Sbjct: 258 LLLKIDSQIVSVDVDSGARTVHTEGPGFKISPQYIGNDEIVYRRKGGPAEGLYSTVPGRP 317 Query: 263 ---------PRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 P +S++G+R + + + + R T ++ +++ Sbjct: 318 VVKLEGLRTPAWSTDGRRVVYEKFTWRGWTQNQALYSWDAGRPYRYT-----DVWPAFAK 372 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKR-------------ISQDKEASYFDPVWSPQG 358 D + ++ + + M+ +GS ++R + + A F PVWSP G Sbjct: 373 DGTMVLTAKGEDSSVDI--MRPDGSARRRVYDVSRQSGLDPVLVKRGLAGAFFPVWSPDG 430 Query: 359 DLIA------FTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIF---S 407 + I FT+ + + +++DGS L +DS N P++S G+ ++F + Sbjct: 431 EWIVFGVGEWFTQRGRGRAKLMRVRRDGSGLEQLTDDSIFNAGFPSYSADGKEVVFRIAN 490 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + L ++L R I T Y + P W Sbjct: 491 EDPKSASLGGLAVLNLETRQIRRI-TAGYDNMPIWSP 526 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 28/199 (14%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G + L + RDG+ + LT P +S + ++V + +ED L Sbjct: 442 TQRGRGRAKLMRVRRDGSGLEQLTDDSIFNAGFPSYSADGKEVVF-RIANEDPKSASLGG 500 Query: 244 TRI----DRAPKRIGNFRSMILAPRFSSNGKRALISV------QKDEAMDIYSVDLQSNA 293 + R +RI P +S +G R L + D+Y+V + Sbjct: 501 LAVLNLETRQIRRIT--AGYDNMPIWSPDGSRILFNRGVRNPNSIWSNFDLYTVRPDGSD 558 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREG--------------KEQLYVMQSNGSDQK 339 +RLT+ + ++PD QI++ S G QL+VM ++G +++ Sbjct: 559 LQRLTSHPASDGHPVWTPDGKQILYNSGMAGYRDEACHYDQTFQPYGQLFVMDADGRNKR 618 Query: 340 RISQDKEASYFDPVWSPQG 358 +I+ D P + P G Sbjct: 619 QIT-DSIWEDSTPQYVPPG 636 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 57/391 (14%), Positives = 121/391 (30%), Gaps = 110/391 (28%) Query: 159 SDDIYQSITGEKGDFNSRILF-------VSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 +D + + + G + F V S G+ ++L DG + LT S Sbjct: 51 ADGSNERLLIDSGTLDYNASFSSDGQWIVFTSERDGLGNSNLYRARADGTQVERLTDS-P 109 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG----------NFRSMIL 261 + FSP+ KVA+ + D + ++++D + + G N S Sbjct: 110 AVDDAAVFSPDGSKVAFVSTRDGFLANIWVLDLQTRKLRNLTGIKGVQADDLQNSPSGFF 169 Query: 262 APRFSSNGKRALISVQKD---------------EAMDIYSVDLQSNATERLTNTLFIN-I 305 P +S +G+ S ++ + + IY + + R+ + Sbjct: 170 RPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQELSIYVIRVDGTGLRRVASRKDHCLG 229 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSN--------------GSDQKRISQDKEA---- 347 S +S D +IVF + + +V++ + S + + + Sbjct: 230 SPRWSGDGKRIVF-YETLAEYTYWVLRPDLLLKIDSQIVSVDVDSGARTVHTEGPGFKIS 288 Query: 348 ----------------------------------SYFDPVWSPQGDLIAFTKF--SGEKF 371 P WS G + + KF G Sbjct: 289 PQYIGNDEIVYRRKGGPAEGLYSTVPGRPVVKLEGLRTPAWSTDGRRVVYEKFTWRGWTQ 348 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID 422 + D + + P ++ G ++ ++ + DG ++Y + Sbjct: 349 NQALYSWDAGRPYRYTD----VWPAFAKDGTMVLTAKGEDSSVDIMRPDGSARRRVYDVS 404 Query: 423 L-NGRNETLIN-------TPAYASDPQWVGF 445 +G + L+ P ++ D +W+ F Sbjct: 405 RQSGLDPVLVKRGLAGAFFPVWSPDGEWIVF 435 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 66/176 (37%), Gaps = 24/176 (13%) Query: 160 DDIYQSITGE-KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 D I+ + D + ++ L V++ + IR +T D + P Sbjct: 467 DSIFNAGFPSYSADGKEVVFRIANEDPKSASLGGLAVLNLETRQIRRITAGYDNM---PI 523 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAP-----KRIGNFRSMILAPRFSSNGKRAL 273 +SP+ ++ + + ++ P +R+ + + P ++ +GK+ L Sbjct: 524 WSPDGSRILF-NRGVRNPNSIWSNFDLYTVRPDGSDLQRLTSHPASDGHPVWTPDGKQIL 582 Query: 274 I----SVQKDEA----------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + +DEA ++ +D ++T++++ + + Y P ++ Sbjct: 583 YNSGMAGYRDEACHYDQTFQPYGQLFVMDADGRNKRQITDSIWEDSTPQYVPPGAR 638 >gi|148656436|ref|YP_001276641.1| peptidase S41 [Roseiflexus sp. RS-1] gi|148568546|gb|ABQ90691.1| peptidase S41 [Roseiflexus sp. RS-1] Length = 1082 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 103/294 (35%), Gaps = 48/294 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + V+ DG +R +T D +SP+ + + + + +Y + D Sbjct: 70 TGQGDVYVVPLDGGEVRRVT-YHDTQSAVECWSPDGNAIYFTSQRERQGTAIYRVAISGD 128 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKD----------EAMDIYSVD--LQSNATE 295 + I + S G+ S+ +D +++ ++ + Sbjct: 129 TPIRWIAQPYERLGTVSVSPCGRWIAFSLLRDPWWRRGPNPYGGAELWLASNAPDADDFQ 188 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 RL++ +N ++PDS I F SDR+G E L+V+ +G +R++ + P S Sbjct: 189 RLSDAPGLNYCPMWTPDSGLIYFVSDRDGCENLWVVPRDGGVAERVTSFTDGRLLWPSIS 248 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQ----------------ERLLVEDSNLQAPTWSP 399 G IAF + F I + R+ ++Q SP Sbjct: 249 ADGKKIAFER----DFGIWIFDLTSGDMAPIPITVRQDAKLTPVRVQTYTRDVQELALSP 304 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNE---------TLINTPAYASDPQWVG 444 G+ + F + K+++ + NE + T SD W Sbjct: 305 DGKKIAFIVR------GKIFADFADKENERDPRQGLAYRVSQTAFRDSDVSWSP 352 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 30/256 (11%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 L P P +VA+ D + +R+ + + PR+S +G Sbjct: 9 PYLRAPSLDPTGNRVAFVYAGD------IWLVAADGGRAERLTAHPAGHMLPRWSPDGAA 62 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYV 330 + + D+Y V L R+T + +SPD + I F S RE +Y Sbjct: 63 IACTSTRTGQGDVYVVPLDGGEVRRVTYHDTQSAVECWSPDGNAIYFTSQRERQGTAIYR 122 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----------EKFAIGVMK--K 378 + +G R SP G IAF+ + + Sbjct: 123 VAISGDTPIRWIAQPYERLGTVSVSPCGRWIAFSLLRDPWWRRGPNPYGGAELWLASNAP 182 Query: 379 DGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT---- 433 D + L + P W+P + F +DG L+ + +G + + Sbjct: 183 DADDFQRLSDAPGLNYCPMWTPDSGLIYFVSDRDG--CENLWVVPRDGGVAERVTSFTDG 240 Query: 434 ----PAYASDPQWVGF 445 P+ ++D + + F Sbjct: 241 RLLWPSISADGKKIAF 256 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 15/214 (7%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR-----FSSNGKRA 272 SP+ +K+A+ + D +R P++ +R A R +S + + Sbjct: 301 ALSPDGKKIAFIV---RGKIFADFADKENERDPRQGLAYRVSQTAFRDSDVSWSPDSRSL 357 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + ++Y D + RLT + +SPD I + S G +++ ++ Sbjct: 358 VYVSDRHGDEEVYRYDFPGRSETRLTYGPKRKSAPCFSPDGRWIAYAS---GDDEIRLID 414 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSN 391 + + WSP +AF F + V + D Q + SN Sbjct: 415 VVSGADRGFIRAHFVFGASFSWSPDSRWLAFCAQDERFFSNLYVQRIDEEQPHQISFLSN 474 Query: 392 LQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +QA P WSP GR ++F+ + S++ +DL Sbjct: 475 IQAAGPLWSPDGRFIVFTTGQY-RAESQIARVDL 507 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 98/271 (36%), Gaps = 26/271 (9%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 L + + V+ + + ++ DG LT PR+SP+ +A + Sbjct: 16 LDPTGNRVAFVYAGDIWLVAADGGRAERLTAHPAG-HMLPRWSPDGAAIACTSTRTGQG- 73 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATER 296 VY++ +R+ + +S +G + Q++ + IY V + + R Sbjct: 74 DVYVVPLD-GGEVRRVTYHDTQSAVECWSPDGNAIYFTSQRERQGTAIYRVAISGDTPIR 132 Query: 297 LTNTLFINISA-SYSPDSSQIVFESDRE----------GKEQLYVMQ--SNGSDQKRISQ 343 + + S SP I F R+ G +L++ + D +R+S Sbjct: 133 WIAQPYERLGTVSVSPCGRWIAFSLLRDPWWRRGPNPYGGAELWLASNAPDADDFQRLS- 191 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSG 401 D + P+W+P LI F + V+ +DG + D L P+ S G Sbjct: 192 DAPGLNYCPMWTPDSGLIYFVSDRDGCENLWVVPRDGGVAERVTSFTDGRLLWPSISADG 251 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + F R ++ DL + I Sbjct: 252 KKIAFERDFG------IWIFDLTSGDMAPIP 276 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 61/375 (16%), Positives = 115/375 (30%), Gaps = 69/375 (18%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR-ILFVSESVVSGIIKN 191 + K + R+ + +SR +++VS+ Sbjct: 312 IVRGKIFADFADKENERDPRQGLAYRVSQTAFRDSDVSWSPDSRSLVYVSDRHGD----E 367 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + D G + LT + P FSP+ + +AYA+ DDE + L+D Sbjct: 368 EVYRYDFPGRSETRLTYGPKRK-SAPCFSPDGRWIAYASGDDE----IRLIDVVSGADRG 422 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLFIN-ISASY 309 I + +S + + Q + ++Y + +++ I + Sbjct: 423 FIRAHFVFGASFSWSPDSRWLAFCAQDERFFSNLYVQRIDEEQPHQISFLSNIQAAGPLW 482 Query: 310 SPDSSQIVFESDR-EGKEQLYVMQSNGSDQ-------KRI-------SQDKEASYFDPVW 354 SPD IVF + + + Q+ + +R+ ++ E++ Sbjct: 483 SPDGRFIVFTTGQYRAESQIARVDLQPQPPIFREAEFERLFESAQSSTRKSESASRHVAH 542 Query: 355 SPQGDL-----------IAFTKFSGEKFAIGVMKKDGSQ--------------------- 382 P + + G V +++GS+ Sbjct: 543 VPDHKRHTDADREPLPVLPIVEPDGPPEDGTVHEREGSKSVKASQTVKEIRIILSGIERR 602 Query: 383 ERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID---LNGRNETLINTPA--- 435 RLL + A SP GR LI S G +D + L NT Sbjct: 603 LRLLTPPQMDATALCISPDGRDLICSATVAGRQNLWTLPLDEARADQGPRQLTNTSGLKS 662 Query: 436 ---YASDPQWVGFMD 447 +A D + + F+D Sbjct: 663 HAWFAPDGKSICFLD 677 >gi|302326672|gb|ADL25873.1| oxidoreductase, Gfo/Idh/MocA family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 668 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 100/284 (35%), Gaps = 41/284 (14%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 E ++++ F++ + I K +L Y+ + + +P + Sbjct: 394 CVIEAPNWSADGTFLTYNSNGRIFKYTLATDKVTEIESHYVDNCNNDHVLDP----DGSG 449 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF----SSNGKRALISVQKDEA 281 V + + ED L R P+ + LAP + + +GK +++ + Sbjct: 450 VYVSHHTKEDGLSRIYKIYFDGREPRLVTP-----LAPSYLHGITPDGKTLAYCAERNGS 504 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY++ RLT +N Y + I F S+R G+ Q + M+++GS+Q ++ Sbjct: 505 YDIYTIPAAGGNETRLTTAFGLNDGPEYDCNGEYIWFNSERSGRMQAFCMKADGSEQTQM 564 Query: 342 SQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMK------------K 378 + D + + P SP + + + +M+ Sbjct: 565 THDLHWNTWFPHISPDRQKVVMVAYTETDVRPGEHVPNKNVELRLMRRALPVESNCALPA 624 Query: 379 DG-----SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 D + +L + +W+P + F GD S Sbjct: 625 DSWSAPQTILKLFGGQGTINVNSWAPDSKRFAFVSYIHGDDPSN 668 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 79/210 (37%), Gaps = 16/210 (7%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + D + + D A K + F +I AP +S++G + I+ Sbjct: 366 TWNRNGDKSILQVFDIETGEA-KVLKEFDCVIEAPNWSADGTFLTY----NSNGRIFKYT 420 Query: 289 LQSNATERLTNTLFINIS--ASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQ 343 L ++ + + N + PD S V+ S +G ++Y + +G + + ++ Sbjct: 421 LATDKVTEIESHYVDNCNNDHVLDPDGSG-VYVSHHTKEDGLSRIYKIYFDGREPRLVTP 479 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGR 402 A + +P G +A+ + I + G E RL P + +G Sbjct: 480 L--APSYLHGITPDGKTLAYCAERNGSYDIYTIPAAGGNETRLTTAFGLNDGPEYDCNGE 537 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + F+ ++ G + + + +G +T + Sbjct: 538 YIWFNSERSGRMQA--FCMKADGSEQTQMT 565 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 81/206 (39%), Gaps = 29/206 (14%) Query: 244 TRIDRAPKRIGNFRSMILAP--RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 T +D+ ++ G + ++P ++ NG + + D+++ + L Sbjct: 344 TLMDKIREQFGVSYTFEISPGETWNRNGDK----------SILQVFDIETGEAKVLKEFD 393 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDL 360 + + ++S D + + + S +++ I S + D V P G Sbjct: 394 CVIEAPNWSADGTFLTYNS----NGRIFKYTLATDKVTEIESHYVDNCNNDHVLDPDGSG 449 Query: 361 IAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTW----SPSGRSLIFSRKKDGDT 414 + + + I + DG + RL+ AP++ +P G++L + +++G Sbjct: 450 VYVSHHTKEDGLSRIYKIYFDGREPRLVT----PLAPSYLHGITPDGKTLAYCAERNGS- 504 Query: 415 GSKLYSIDLNGRNETLINTPAYASDP 440 +Y+I G NET + T +D Sbjct: 505 -YDIYTIPAAGGNETRLTTAFGLNDG 529 >gi|261415324|ref|YP_003249007.1| oxidoreductase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371780|gb|ACX74525.1| oxidoreductase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 668 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 100/284 (35%), Gaps = 41/284 (14%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 E ++++ F++ + I K +L Y+ + + +P + Sbjct: 394 CVIEAPNWSADGTFLTYNSNGRIFKYTLATDKVTEIESHYVDNCNNDHVLDP----DGSG 449 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF----SSNGKRALISVQKDEA 281 V + + ED L R P+ + LAP + + +GK +++ + Sbjct: 450 VYVSHHTKEDGLSRIYKIYFDGREPRLVTP-----LAPSYLHGITPDGKTLAYCAERNGS 504 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY++ RLT +N Y + I F S+R G+ Q + M+++GS+Q ++ Sbjct: 505 YDIYTIPAAGGNETRLTTAFGLNDGPEYDCNGEYIWFNSERSGRMQAFCMKADGSEQTQM 564 Query: 342 SQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMK------------K 378 + D + + P SP + + + +M+ Sbjct: 565 THDLHWNTWFPHISPDRQKVVMVAYTETDVRPGEHVPNKNVELRLMRRALPVESNCALPA 624 Query: 379 DG-----SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 D + +L + +W+P + F GD S Sbjct: 625 DSWSAPQTILKLFGGQGTINVNSWAPDSKRFAFVSYIHGDDPSN 668 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 79/210 (37%), Gaps = 16/210 (7%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + D + + D A K + F +I AP +S++G + I+ Sbjct: 366 TWNRNGDKSILQVFDIETGEA-KVLKEFDCVIEAPNWSADGTFLTY----NSNGRIFKYT 420 Query: 289 LQSNATERLTNTLFINIS--ASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQ 343 L ++ + + N + PD S V+ S +G ++Y + +G + + ++ Sbjct: 421 LATDKVTEIESHYVDNCNNDHVLDPDGSG-VYVSHHTKEDGLSRIYKIYFDGREPRLVTP 479 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGR 402 A + +P G +A+ + I + G E RL P + +G Sbjct: 480 L--APSYLHGITPDGKTLAYCAERNGSYDIYTIPAAGGNETRLTTAFGLNDGPEYDCNGE 537 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + F+ ++ G + + + +G +T + Sbjct: 538 YIWFNSERSGRMQA--FCMKADGSEQTQMT 565 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 81/206 (39%), Gaps = 29/206 (14%) Query: 244 TRIDRAPKRIGNFRSMILAP--RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 T +D+ ++ G + ++P ++ NG + + D+++ + L Sbjct: 344 TLMDKIREQFGVSYTFEISPGETWNRNGDK----------SILQVFDIETGEAKVLKEFD 393 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDL 360 + + ++S D + + + S +++ I S + D V P G Sbjct: 394 CVIEAPNWSADGTFLTYNS----NGRIFKYTLATDKVTEIESHYVDNCNNDHVLDPDGSG 449 Query: 361 IAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTW----SPSGRSLIFSRKKDGDT 414 + + + I + DG + RL+ AP++ +P G++L + +++G Sbjct: 450 VYVSHHTKEDGLSRIYKIYFDGREPRLVT----PLAPSYLHGITPDGKTLAYCAERNGS- 504 Query: 415 GSKLYSIDLNGRNETLINTPAYASDP 440 +Y+I G NET + T +D Sbjct: 505 -YDIYTIPAAGGNETRLTTAFGLNDG 529 >gi|312111892|ref|YP_003990208.1| WD40-like beta Propeller containing protein [Geobacillus sp. Y4.1MC1] gi|311216993|gb|ADP75597.1| WD40-like beta Propeller containing protein [Geobacillus sp. Y4.1MC1] Length = 669 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 89/238 (37%), Gaps = 55/238 (23%) Query: 260 ILAPRFSSNGKRALIS-----VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + P+FS +GK+ + +++ ++ + L + ++ T + +SPD Sbjct: 24 VSDPQFSPDGKKVIFVQKTIDHEREYRSHLFLLSLADGSVKQWTFGKSKDTFPRWSPDGK 83 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTK-------- 365 I F S+R GK Q++ + ++G + ++++ K WSP G LIA T Sbjct: 84 TIAFLSNRSGKPQIWRLPADGGEARQLTFLKNG-VRQLCWSPNGRFLIALTSLGKEETLK 142 Query: 366 --------------------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 ++ + + + + + L + + Sbjct: 143 EHEEKNKNEKEKRKLTPLIVERLQYKSDAAGFRDDKQDVLIRIDAETGEMQALTN-GDDE 201 Query: 394 APTW--SPSGRSLIFSRKKDGD----TGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 ++ SP G+++ F+ + D ++ +D++ G+ + + + + W Sbjct: 202 IISFAISPDGQTVAFAANRSEDPDFTFTRDIFLLDIDSGKTTKITDGNGFFASLSWSP 259 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 109/355 (30%), Gaps = 80/355 (22%) Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 + K A H +SD S G+K F + + S + SL D Sbjct: 6 MKKTTRGIAAEDLFRIHFVSDP-QFSPDGKKVIFVQKTIDHEREYRSHLFLLSL----AD 60 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G+ ++ PR+SP+ + +A+ + +++ ++ Sbjct: 61 GSVKQWTF--GKSKDTFPRWSPDGKTIAFLSNRSGKPQ--IWRLPADGGEARQLTFLKNG 116 Query: 260 ILAPRFSSNGKRA-----------------------------------------LISVQK 278 + +S NG+ + Sbjct: 117 VRQLCWSPNGRFLIALTSLGKEETLKEHEEKNKNEKEKRKLTPLIVERLQYKSDAAGFRD 176 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQ 332 D+ + +D ++ + LTN IS + SPD + F ++R ++++ Sbjct: 177 DKQDVLIRIDAETGEMQALTNGDDEIISFAISPDGQTVAFAANRSEDPDFTFTRDIFLLD 236 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLV 387 + +I+ D + WSP G ++A + ++R L Sbjct: 237 IDSGKTTKIT-DGNGFFASLSWSPDGKMLAAIGHELEYLGATLNRVWTFDIPSGEKRALT 295 Query: 388 EDSNLQ------------APT----WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + ++ AP+ W+ G L F + G LY + L+G Sbjct: 296 ANWDVHVGDAMVGDMHSGAPSPGLIWNKEGNGLYFLASERGRV--NLYHVALDGT 348 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 67/312 (21%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK-VAYATYDDE------------ 234 K + + DG R LT ++ + +SPN + +A + E Sbjct: 92 SGKPQIWRLPADGGEARQLTFLKNGVRQL-CWSPNGRFLIALTSLGKEETLKEHEEKNKN 150 Query: 235 --------------------------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 D V + + + N I++ S + Sbjct: 151 EKEKRKLTPLIVERLQYKSDAAGFRDDKQDVLIRIDAETGEMQALTNGDDEIISFAISPD 210 Query: 269 GKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 G+ + + E D I+ +D+ S T ++T+ S S+SPD + Sbjct: 211 GQTVAFAANRSEDPDFTFTRDIFLLDIDSGKTTKITDGNGFFASLSWSPDGKMLAAIGHE 270 Query: 323 -----EGKEQLYVMQSNGSDQKRISQDKE--------ASYFDPVWSP------QGDLIAF 363 +++ +++ ++ + + SP +G+ + F Sbjct: 271 LEYLGATLNRVWTFDIPSGEKRALTANWDVHVGDAMVGDMHSGAPSPGLIWNKEGNGLYF 330 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + + DG+ ++ D +L + P + + D LY++ L Sbjct: 331 LASERGRVNLYHVALDGTITPSVIGDFHLYGLSIHP-HHHMAVAAISDPTHIGDLYAVSL 389 Query: 424 -NGRNETLINTP 434 +GR + L N Sbjct: 390 RDGRRDKLTNAN 401 >gi|156743096|ref|YP_001433225.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] gi|156234424|gb|ABU59207.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] Length = 1090 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 24/241 (9%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P P ++A+ D ++L+D +R+ + + PR+S +G + Sbjct: 15 PSIDPAGSRIAFVYAGD-----IWLVDV-SGGQAERLTAHPANHMLPRWSPDGSAIAYTS 68 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNG 335 + D+Y + L R+T + +SPD + I F S RE + +Y + ++G Sbjct: 69 SRTGQGDVYVLPLNGGEVRRITYHEAQSAVECWSPDGAAIYFTSQRERQGAAIYRIAASG 128 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----------EKFAIGVMK--KDGSQE 383 R SP G +AF+ + ++ D Sbjct: 129 GTPVRWIAQPYERLGTVAVSPCGRWLAFSLMRDLWWRRGPNPYGGAELWLVSNAPDADDF 188 Query: 384 RLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TPAYASDP 440 L + P WSP + + F +DG L+ G I T P Sbjct: 189 FQLSDAPGMNYCPMWSPDSQLIFFVSDRDGS--ENLWVAPREGGVAERITAFTDGRLLWP 246 Query: 441 Q 441 Sbjct: 247 S 247 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 103/312 (33%), Gaps = 54/312 (17%) Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 + L DV + + R AH + D S I + S Sbjct: 28 YAGDIWLVDVSGGQ------------AERLTAH----PANHMLPRWSPDG-SAIAYTSSR 70 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 G + V+ +G +R +T Q E +SP+ + + + + +Y + Sbjct: 71 TGQG----DVYVLPLNGGEVRRITYHEAQSAVE-CWSPDGAAIYFTSQRERQGAAIYRIA 125 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD----------EAMDIYSVD--LQS 291 + I + S G+ S+ +D +++ V + Sbjct: 126 ASGGTPVRWIAQPYERLGTVAVSPCGRWLAFSLMRDLWWRRGPNPYGGAELWLVSNAPDA 185 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + +L++ +N +SPDS I F SDR+G E L+V G +RI+ + Sbjct: 186 DDFFQLSDAPGMNYCPMWSPDSQLIFFVSDRDGSENLWVAPREGGVAERITAFTDGRLLW 245 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ----------------ERLLVEDSNLQAP 395 P S G +IAF + F I + R+ + Sbjct: 246 PSISADGRMIAFER----DFGIWTLDLASGATTRVPIQVRQDTKVTPVRVQTYTRDAGEL 301 Query: 396 TWSPSGRSLIFS 407 SP G+ + F+ Sbjct: 302 ALSPDGKKVAFT 313 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 77/198 (38%), Gaps = 21/198 (10%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 AP G R D I+ VD+ ERLT ++ +SPD S I + S Sbjct: 14 APSIDPAGSRIAFVYAGD----IWLVDVSGGQAERLTAHPANHMLPRWSPDGSAIAYTSS 69 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDG 380 R G+ +YV+ NG + +RI+ EA WSP G I FT + AI + G Sbjct: 70 RTGQGDVYVLPLNGGEVRRITY-HEAQSAVECWSPDGAAIYFTSQRERQGAAIYRIAASG 128 Query: 381 SQERLLVEDS--NLQAPTWSPSGRSLIFSRKKD--------GDTGSKLYSI----DLNGR 426 + L SP GR L FS +D G++L+ + D + Sbjct: 129 GTPVRWIAQPYERLGTVAVSPCGRWLAFSLMRDLWWRRGPNPYGGAELWLVSNAPDADDF 188 Query: 427 NETLINTPAYASDPQWVG 444 + L + P P W Sbjct: 189 FQ-LSDAPGMNYCPMWSP 205 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 9/211 (4%) Query: 218 RFSPNQQKVAYATYD--DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 SP+ +KVA+ D + RI + +S + +R + Sbjct: 302 ALSPDGKKVAFTVRGKIFADFAEKETERDQRHGPAYRISHTAFRDSDIAWSPDSRRLVYV 361 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + ++Y D + + RLT + +SPD I + S G +++ +++ + Sbjct: 362 SDRHGDEEVYCYDFLARSETRLTFGAKRKSAPCFSPDGRWIAYAS---GDDEIRLIEVSS 418 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQA 394 + + + WSP +AF F + V + Q + SNLQA Sbjct: 419 GEDRPFIRAYFVFGASFAWSPDSRWLAFCAQDERFFSNVYVQHIEEEQAHQISFLSNLQA 478 Query: 395 --PTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 P WSP GR L+F+ + S++ IDL Sbjct: 479 AGPLWSPDGRFLVFTTGQY-RAESQIARIDL 508 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 74/246 (30%), Gaps = 62/246 (25%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV- 276 +SP+ + +A+ D+ VY+ ++A + P +S +G+ + + Sbjct: 436 AWSPDSRWLAFCAQDERFFSNVYVQHIEEEQAHQISFLSNLQAAGPLWSPDGRFLVFTTG 495 Query: 277 QKDEAMDIYSVDLQSNAT-------ERL------------------------TNTLFINI 305 Q I +DLQ ERL T + + Sbjct: 496 QYRAESQIARIDLQPQPPVFRETEFERLFELHKSDCRDKQTAGPPSTVGPPHTRSADADR 555 Query: 306 S------ASYSPDSSQIVFESDREGKEQ--------------LYVMQSNGSDQKRISQDK 345 PD ESDR ++ + ++ + + R+ Sbjct: 556 EPQPMVVPVIEPDD-----ESDRAARQHNAPSRLSRSTSPSEITIVFNGIERRLRLLTPP 610 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD----GSQERLLVEDSNLQAPT-WSPS 400 + SP G + + + + + D G R L ++ ++P Sbjct: 611 QMDAIALCISPDGRDLVCSATIAGRQNLWTLPLDEPRAGQGPRQLTSTPGTKSCACFTPD 670 Query: 401 GRSLIF 406 G+ + F Sbjct: 671 GKQIYF 676 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 58/361 (16%), Positives = 111/361 (30%), Gaps = 76/361 (21%) Query: 152 RKIAHTISDDIYQSITGEKGDFNS----RILFVSESVVSGIIKNSLCVMDRDGANIRYLT 207 R H + I + + S R+++VS+ + + A Sbjct: 329 RDQRHGPAYRISHTAFRDSDIAWSPDSRRLVYVSDRHGDEEVYCYDFL-----ARSETRL 383 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + P FSP+ + +AYA+ D D +R+ + + DR R A +S Sbjct: 384 TFGAKRKSAPCFSPDGRWIAYASGD--DEIRLIEVSSGEDRPFIRAYFVFGASFA--WSP 439 Query: 268 NGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIVFE------ 319 + + Q + ++Y ++ +++ + +SPD +VF Sbjct: 440 DSRWLAFCAQDERFFSNVYVQHIEEEQAHQISFLSNLQAAGPLWSPDGRFLVFTTGQYRA 499 Query: 320 -----------------------------SD-RE----------GKEQLYVMQSNGSDQK 339 SD R+ G ++ Q Sbjct: 500 ESQIARIDLQPQPPVFRETEFERLFELHKSDCRDKQTAGPPSTVGPPHTRSADADREPQP 559 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDS-NLQAPTW 397 + E + Q + + S I ++ + RLL + A Sbjct: 560 MVVPVIEPDDESDRAARQHNAPSRLSRSTSPSEITIVFNGIERRLRLLTPPQMDAIALCI 619 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLN-----GRNETLINTPA------YASDPQWVGFM 446 SP GR L+ S G L+++ L+ L +TP + D + + F+ Sbjct: 620 SPDGRDLVCSATIAGRQ--NLWTLPLDEPRAGQGPRQLTSTPGTKSCACFTPDGKQIYFL 677 Query: 447 D 447 D Sbjct: 678 D 678 >gi|116619705|ref|YP_821861.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] gi|116222867|gb|ABJ81576.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] Length = 1059 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 17/212 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +P+ +K+A+ + + V+ R R+ + + +S + +RA+ +D Sbjct: 322 APDGRKLAFTVHGE-----VFAGGAREGGGALRMTHTAANETQIAWSPDSRRAVYVSDRD 376 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 +Y+ D ++A RLT+ + +S D + F D +QL V + + Sbjct: 377 GGYRLYAYDFSTSAETRLTSEAGDETAPVWSGDGKLLAFVRD---AKQLCVYDTAAKQVR 433 Query: 340 RISQDK-----EASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLV--EDSN 391 ++ + S WSP IA+ F + V+ G + R + ++N Sbjct: 434 VLTSGRFPRPPFGSNRFYAWSPDSKWIAYFDIGARGFRNVYVVPVAGGEPRQISFLSNTN 493 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + WSP G ++F + + + IDL Sbjct: 494 GGSVVWSPDGTYILFDTSQR-TENNNIARIDL 524 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 85/239 (35%), Gaps = 26/239 (10%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 EP SPN+ +VA+ + D + + + + P +S +G R Sbjct: 24 PYFTEPSVSPNRAEVAFVSGGD------IWTSPLSGGEARLLVSHPANETRPMYSPDGTR 77 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGKEQL 328 + DIY ++L S A +R+T ++S D + F S D G + Sbjct: 78 LAFVSNRTGNGDIYVLELGSGALKRITFDDSAEQLDAWSRDGKYLYFSSTAQDVAGMNDI 137 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-------------EKFAIGV 375 Y + + G +S D+ + F SP G +AFT ++ I + Sbjct: 138 YRVSAEGGTPVAVSADRYVNEFFSAPSPDGKSLAFTARGNTSGQWWRHGHSHLDESEIWL 197 Query: 376 MKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 G E+L D P WS G + + + G L+ ++G I Sbjct: 198 AAWAGGAKYEKLAAGDFKCLWPMWSADGARVYYMSDQGG--AENLWEKPVHGGTAKEIT 254 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 38/313 (12%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 DD + + + + + L+ S + N + + +G ++ R F Sbjct: 106 DDSAEQL--DAWSRDGKYLYFSSTAQDVAGMNDIYRVSAEGGTPVAVSADRYVNEFFSAP 163 Query: 220 SPNQQKVAYAT------------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 SP+ + +A+ + D ++L +++ L P +S+ Sbjct: 164 SPDGKSLAFTARGNTSGQWWRHGHSHLDESEIWLAAWAGGAKYEKLAAGDFKCLWPMWSA 223 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFESDREGKE 326 +G R + A +++ + + +T + S S D IVFE D Sbjct: 224 DGARVYYMSDQGGAENLWEKPVHGGTAKEITQFHDGRLLWPSISYDGKTIVFERD----F 279 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDP--------------VWSPQGDLIAFTKFSGEKFA 372 ++ + + I + + P V +P G +AFT GE FA Sbjct: 280 SVWKLDTATGKAAPIEITRRGAPGTPEVTHLSFNNQFRDLVLAPDGRKLAFT-VHGEVFA 338 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 G + R+ +N WSP R ++ +DG G +LY+ D + ET + Sbjct: 339 GGAREGG-GALRMTHTAANETQIAWSPDSRRAVYVSDRDG--GYRLYAYDFSTSAETRLT 395 Query: 433 T-PAYASDPQWVG 444 + + P W G Sbjct: 396 SEAGDETAPVWSG 408 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 22/257 (8%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F + + + V+ + + G R L S P +SP+ ++A+ + Sbjct: 25 YFTEPSVSPNRAEVAFVSGGDIWTSPLSGGEARLLV-SHPANETRPMYSPDGTRLAFVSN 83 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD---EAMDIYSVD 288 + +Y+++ KRI S +S +GK S DIY V Sbjct: 84 RTGNG-DIYVLELGSGAL-KRITFDDSAEQLDAWSRDGKYLYFSSTAQDVAGMNDIYRVS 141 Query: 289 LQSNATERLTNTLFINISAS-YSPDSSQIVFESD--------REGKEQ-----LYVMQSN 334 + ++ ++N S SPD + F + R G +++ Sbjct: 142 AEGGTPVAVSADRYVNEFFSAPSPDGKSLAFTARGNTSGQWWRHGHSHLDESEIWLAAWA 201 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNL 392 G + + P+WS G + + G + G + + D L Sbjct: 202 GGAKYEKLAAGDFKCLWPMWSADGARVYYMSDQGGAENLWEKPVHGGTAKEITQFHDGRL 261 Query: 393 QAPTWSPSGRSLIFSRK 409 P+ S G++++F R Sbjct: 262 LWPSISYDGKTIVFERD 278 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 20/275 (7%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLCVMDRDGANIRYLT 207 +R A+ S +T E GD + + +++ + LCV D +R LT Sbjct: 377 GGYRLYAYDFSTSAETRLTSEAGDETAPVWSGDGKLLAFVRDAKQLCVYDTAAKQVRVLT 436 Query: 208 PSRD-----QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R +SP+ + +AY VY++ + + + Sbjct: 437 SGRFPRPPFGSNRFYAWSPDSKWIAYFDIGARGFRNVYVVPVAGGEPRQISFLSNTNGGS 496 Query: 263 PRFSSNGKRALI-SVQKDEAMDIYSVDLQSNAT---ERLTNTLFINISASYSPDSSQIVF 318 +S +G L + Q+ E +I +DL A E LF + S + ++++ Sbjct: 497 VVWSPDGTYILFDTSQRTENNNIARIDLILKAPPFREDRFRDLFRDPSPTRGAEAARPA- 555 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSGEKFAIGVMK 377 +++R + + ++ + R+S + SP G L+ T + + Sbjct: 556 QAERAPAKPVQIVFE--GIRNRLSMLQTGLDARIHQISPDGKLLLLTASAARQQNFYTWS 613 Query: 378 KDG------SQERLLVEDSNLQAPTWSPSGRSLIF 406 D +++ S +SP G+ + + Sbjct: 614 LDELATEPPVAKQVTSTASIKTGGQFSPDGKEIYY 648 >gi|197122051|ref|YP_002134002.1| amidohydrolase [Anaeromyxobacter sp. K] gi|196171900|gb|ACG72873.1| amidohydrolase [Anaeromyxobacter sp. K] Length = 1042 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 95/262 (36%), Gaps = 35/262 (13%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + P R + P SP+ +V + + L + AP+ + Sbjct: 310 FDFDRTAPRRALGIVAPALSPDGTRVVFQALNR-------LWLMDVGGAPRPLTEGPYYA 362 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P +S +G R + K D+Y +D+ + A +R+T+ ++ ++SPD ++ F+ Sbjct: 363 QDPAWSRDGTRLAYASDKGGTADLYVLDVVTGAEQRVTSLPGAEVAPAWSPDGGRLAFQ- 421 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAI 373 D+ G V+ +++ A P WS G +A +F I Sbjct: 422 DQAGATH--VLDLATGAVRQVVAPLFAP-GRPSWSADGRTLALAALKPYTRRFREGTSQI 478 Query: 374 GVMKKDGSQERL-------LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + R + P WSP G +L F + + + +D +GR Sbjct: 479 LTVDVESGATRYQEAAPFESLSTRGDDGPVWSPDGTALAFVMQ----STLWVMPVDASGR 534 Query: 427 NE----TLINTPAYASDPQWVG 444 + + P A P W G Sbjct: 535 AAGPAVRITSEPTDA--PTWSG 554 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 12/192 (6%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + D+ V R +R+ + P +S G Sbjct: 51 SPDGRDLVL------DLQGVLWSLPRGGGEARRLTDGLLEPARPDYSPRGDLVAFQAYAG 104 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSNGSD 337 I+++ +LT+ + +SPD ++I F SDR +G ++V Sbjct: 105 GTFHIWTMRPDGTEVRQLTSGHGDDREPRFSPDGTRIAFSSDRAFQGSYDVWVADVATGA 164 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV--EDSNLQA 394 R + A F+P W+P G IAF +G AI + G++ L + L + Sbjct: 165 LTR-WTEASADEFEPAWTPDGGEIAFVSGAGSTGTAIEAVDAAGTRRTLATAPAGARLNS 223 Query: 395 PTWSPSGRSLIF 406 P+ SP G L + Sbjct: 224 PSISPDGAHLAW 235 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 31/237 (13%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L +MD GA +P +S + ++AYA+ D +Y++D + A Sbjct: 341 NRLWLMDVGGA--PRPLTEGPYYAQDPAWSRDGTRLAYAS-DKGGTADLYVLDV-VTGAE 396 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ + +AP +S +G R +D+A + +DL + A ++ LF S+S Sbjct: 397 QRVTSLPGAEVAPAWSPDGGRLAF---QDQAGATHVLDLATGAVRQVVAPLFAPGRPSWS 453 Query: 311 PDSSQIVFES-------DREGKEQLYVMQSNGSDQK-----RISQDKEASYFDPVWSPQG 358 D + + REG Q+ + + PVWSP G Sbjct: 454 ADGRTLALAALKPYTRRFREGTSQILTVDVESGATRYQEAAPFESLSTRGDDGPVWSPDG 513 Query: 359 DLIAFTKFSGEKFAIGVMKKD------GSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +AF S + VM D G R+ E ++ APTWS R L++ Sbjct: 514 TALAFVMQS----TLWVMPVDASGRAAGPAVRITSEPTD--APTWSGDSRRLLYLSS 564 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 104/339 (30%), Gaps = 68/339 (20%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 + + D++ R V+ +G + M DG +R LT EPRFSP+ + Sbjct: 83 LEPARPDYSPRGDLVAFQAYAGGT-FHIWTMRPDGTEVRQLTSGHGD-DREPRFSPDGTR 140 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDI 284 +A+++ + A R + P ++ +G S I Sbjct: 141 IAFSSDRAFQGSYDVWVADVATGALTRWTEASADEFEPAWTPDGGEIAFVSGAGSTGTAI 200 Query: 285 YSVDLQSNATERLTNTLFINI-SASYSPDSSQIV---FESDR-----EGKE--------- 326 +VD T + S S SPD + + F ++R +G Sbjct: 201 EAVDAAGTRRTLATAPAGARLNSPSISPDGAHLAWIQFAANRSRLVVDGAPASPFEDVFP 260 Query: 327 -----------------QLYVMQSNGSDQKRISQDKEASYFDPVW--------------- 354 + V + ++++ P W Sbjct: 261 FPAHWLSARTLLYTADGGIRVTDLDAGTSEQVAFQATFRLVRPAWERKRFDFDRTAPRRA 320 Query: 355 --------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 SP G + F + + +M G+ L Q P WS G L + Sbjct: 321 LGIVAPALSPDGTRVVFQALN----RLWLMDVGGAPRPLTEGPYYAQDPAWSRDGTRLAY 376 Query: 407 SRKKDGDTGSKLYSID-LNGRNETLINTPAYASDPQWVG 444 + K G + LY +D + G + + + P P W Sbjct: 377 ASDKGGT--ADLYVLDVVTGAEQRVTSLPGAEVAPAWSP 413 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 7/154 (4%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 A +T N++ + SPD +V D +G L+ + G + +R++ D P Sbjct: 34 AVRDVTVHEGTNVAVTASPDGRDLVL--DLQGV--LWSLPRGGGEARRLT-DGLLEPARP 88 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 +SP+GDL+AF ++G F I M+ DG++ R L + + P +SP G + FS + Sbjct: 89 DYSPRGDLVAFQAYAGGTFHIWTMRPDGTEVRQLTSGHGDDREPRFSPDGTRIAFSSDRA 148 Query: 412 GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D+ G A +P W Sbjct: 149 FQGSYDVWVADVATGALTRWTEASADEFEPAWTP 182 >gi|284116166|ref|ZP_06386712.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] gi|283829532|gb|EFC33886.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] Length = 312 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 11/177 (6%) Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---KEQ 327 + + + ++D +IY ++ + RLTN + +SP +++F SDR+ Sbjct: 6 KVVFTSERDGNREIYMMNPDGSDQVRLTNHRADDTFPVWSPTGERVLFASDRDRFTLSRD 65 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLL 386 LY+M +G + +R+ K WSP G IA+++ I + DG +ER+ Sbjct: 66 LYLMDPDGKNVRRV-FGKSEDRSAATWSPDGKQIAYSRRELNGAYIYIGTIDGKKEERMA 124 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + D +P WSP G + F + ++ +D+ + + ++ P A P W+ Sbjct: 125 IGDG---SPAWSPDGTQIAFLSGFENKQV-RINILDVRTKKQKVL-FPREAK-PSWI 175 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 23/272 (8%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +++F SE + + +M+ DG++ LT R F P +SP ++V +A+ D Sbjct: 6 KVVFTSERDGN----REIYMMNPDGSDQVRLTNHRADDTF-PVWSPTGERVLFASDRDRF 60 Query: 236 ILRVYLMDTRIDR-APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 L L D +R+ A +S +GK+ S ++ IY + Sbjct: 61 TLSRDLYLMDPDGKNVRRVFGKSEDRSAATWSPDGKQIAYSRRELNGAYIYIGTIDGKKE 120 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQD---KEASYF 350 ER+ + S ++SPD +QI F S E K+ ++ ++ QK + Sbjct: 121 ERMAIG---DGSPAWSPDGTQIAFLSGFENKQVRINILDVRTKKQKVLFPREAKPSWING 177 Query: 351 DPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVEDS--NLQAPTWSPSGR 402 D VWS D +AF+ G K + + DG+ + + D+ +P WSP G Sbjct: 178 DLVWSLTTDQLAFSWNPGAKKENVDMETLYTLNSDGTGLKRITSDAAPRETSPVWSPQGD 237 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-NETLINT 433 +L++ K D +++ I L +E L +T Sbjct: 238 ALLYD-KVDKHNRLQIFKIALGSDISEQLTDT 268 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 11/145 (7%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 P ++++VF S+R+G ++Y+M +GSDQ R++ + A PVWSP G+ + F Sbjct: 1 MPTTAKVVFTSERDGNREIYMMNPDGSDQVRLT-NHRADDTFPVWSPTGERVLFASDRDR 59 Query: 370 ---KFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + +M DG R + + + A TWSP G+ + +SR++ G+ +Y ++G Sbjct: 60 FTLSRDLYLMDPDGKNVRRVFGKSEDRSAATWSPDGKQIAYSRRELN--GAYIYIGTIDG 117 Query: 426 RNETLI----NTPAYASDPQWVGFM 446 + E + +PA++ D + F+ Sbjct: 118 KKEERMAIGDGSPAWSPDGTQIAFL 142 Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 13/88 (14%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 +L ++ DG ++ +T P +SP + Y D + L+++ + D + + Sbjct: 205 TLYTLNSDGTGLKRITSDAAPRETSPVWSPQGDALLYDKVDKHNRLQIFKIALGSDISEQ 264 Query: 252 RI-------------GNFRSMILAPRFS 266 N P F+ Sbjct: 265 LTDTFIPKVFGKFFQANSPGDWFDPAFA 292 >gi|225010671|ref|ZP_03701141.1| amidohydrolase [Flavobacteria bacterium MS024-3C] gi|225005224|gb|EEG43176.1| amidohydrolase [Flavobacteria bacterium MS024-3C] Length = 1167 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 92/209 (44%), Gaps = 23/209 (11%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + + S +G+ + + D +Y++ + +T+ L + +SPD Sbjct: 52 TTEKGTWTSLDVSPDGQTIVFDLMGD----LYTMPISGGNATAITHGLAYEVHPRFSPDG 107 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + + SD+ G + +++M + + +IS++++ ++F WSP GD + K + Sbjct: 108 KSLAYISDKSGSDNIWLMDLSSKEDTQISKEQKNNFFSVAWSPDGDYLVGAKGR-RNIKL 166 Query: 374 GVMKKDGSQERLLVEDS---NLQAPTWSPSGRSLIFSRKKDG-DTGSKL-------YSID 422 + KDG L+ + P + G++L FS++ + ++L YS++ Sbjct: 167 HLYHKDGGGGAPLISEPKGLKAIDPFFGADGKTLYFSQRNGAWNYNAQLPQYQVGTYSME 226 Query: 423 LNGRNETLIN------TPAYASDPQWVGF 445 +G + + + TP + D +W+ + Sbjct: 227 -DGATDVITSRYGSAFTPTLSKDGKWLVY 254 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 20/228 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ Q + + D + + I + + + PRFS +GK K Sbjct: 64 SPDGQTIVFDLMGDLYTMPI------SGGNATAITHGLAYEVHPRFSPDGKSLAYISDKS 117 Query: 280 EAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQIV-FESDREGKEQLYVMQSNGSD 337 + +I+ +DL S +++ N S ++SPD +V + R K LY G Sbjct: 118 GSDNIWLMDLSSKEDTQISKEQKNNFFSVAWSPDGDYLVGAKGRRNIKLHLYHKD-GGGG 176 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMKK-DGSQERLLVE 388 IS+ K DP + G + F++ +G ++ +G DG+ + + Sbjct: 177 APLISEPKGLKAIDPFFGADGKTLYFSQRNGAWNYNAQLPQYQVGTYSMEDGATDVITSR 236 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + PT S G+ L++ + + TG L DLN E+ + P Sbjct: 237 YGSAFTPTLSKDGKWLVYGTRFEDQTG--LILRDLNTGEESWLAYPVQ 282 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 87/299 (29%), Gaps = 42/299 (14%) Query: 184 VVSGIIKNSLCVMDRDGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 G L + +DG ++ + +P F + + + ++ + L Sbjct: 157 GAKGRRNIKLHLYHKDGGGGAPLISEPKGLKAIDPFFGADGKTLYFSQRNGAWNYNAQLP 216 Query: 243 DTRIDRA------PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 ++ I + P S +GK + + ++ + DL + Sbjct: 217 QYQVGTYSMEDGATDVITSRYGSAFTPTLSKDGKWLVYGTRFEDQTGLILRDLNTGEESW 276 Query: 297 LTNTLFINISASYSPDSSQIV--FE-------------------SDREGKEQLYVMQSNG 335 L + + S +P F SD+ + Y Sbjct: 277 LAYPVQRDEQESIAPLGVLPAMSFTPDSNALIVSYGGDIHRITLSDKTASKIPYTASVAL 336 Query: 336 SDQKRISQDKEASYFDPVW---------SPQGDLIAFTKFSGEKFAIGVMK-KDGSQERL 385 ++ S D SP G +AFT + + VM +G+ +R+ Sbjct: 337 ELGPQLDFKYPISDADTAMASQIRDAKPSPDGKRLAFTALN----RLYVMDLPNGTPKRV 392 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D P WSP G ++F+ + + L T + P+W Sbjct: 393 TTHDFTEAQPAWSPDGSQIVFTTWNGSEGHLYKARMGRRTAVVKLTQTTGIYTQPRWSY 451 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 98/298 (32%), Gaps = 38/298 (12%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + T EKG + S + + + L M G N +T PRFSP+ + Sbjct: 50 AFTTEKGTWTSLDVSPDGQTIVFDLMGDLYTMPISGGNATAITHGL-AYEVHPRFSPDGK 108 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +AY + D ++LMD + ++ + +S +G + + + + Sbjct: 109 SLAYIS-DKSGSDNIWLMDLSSKEDTQISKEQKNNFFSVAWSPDGDYLV-GAKGRRNIKL 166 Query: 285 YSVDLQSNATERLTNTL----FINISASYSPDSSQIVFESDREG---------KEQLYVM 331 + L + I+ + D + F S R G + Q+ Sbjct: 167 HLYHKDGGGGAPLISEPKGLKAID--PFFGADGKTLYF-SQRNGAWNYNAQLPQYQVGTY 223 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-- 389 I+ + S F P S G + + ++ + + + +E L Sbjct: 224 SMEDGATDVITS-RYGSAFTPTLSKDGKWLVYGTRFEDQTGLILRDLNTGEESWLAYPVQ 282 Query: 390 ----------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 L A +++P +LI S G ++ I L+ + + I A Sbjct: 283 RDEQESIAPLGVLPAMSFTPDSNALIVSY------GGDIHRITLSDKTASKIPYTASV 334 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 24/178 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +GKR + +Y +DL + +R+T F ++SPD SQIVF + + Sbjct: 365 SPDGKRLAFTA----LNRLYVMDLPNGTPKRVTTHDFTEAQPAWSPDGSQIVFTTWNGSE 420 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV---------- 375 LY + Y P WS D I F S + + + Sbjct: 421 GHLYKARMGRRTAVVKLTQTTGIYTQPRWSYAKDRIVFLAGSNQVYKDAIGPMASNATED 480 Query: 376 ---MKKDGSQERLLVEDSNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + G +L+ + + P ++ R ++S K L SI +G +E Sbjct: 481 LVWISGQGGSNQLIAKSKGREMPHFTKVDNRIYLYSGSKG------LVSIRWDGSDEK 532 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 24/160 (15%) Query: 191 NSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 N L VMD +G R T D +P +SP+ ++ + T+ + +Y A Sbjct: 377 NRLYVMDLPNGTPKRVTTH--DFTEAQPAWSPDGSQIVFTTW-NGSEGHLYKARMGRRTA 433 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 ++ + PR+S R + ++ + SNATE L Sbjct: 434 VVKLTQTTGIYTQPRWSYAKDRIVFLAGSNQVYKDAIGPMASNATEDL------------ 481 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 V+ S + G QL + +S G + ++ Y Sbjct: 482 -------VWISGQGGSNQL-IAKSKGREMPHFTKVDNRIY 513 >gi|220916821|ref|YP_002492125.1| amidohydrolase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954675|gb|ACL65059.1| amidohydrolase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1040 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 95/262 (36%), Gaps = 35/262 (13%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + P R + P SP+ +V + + L + AP+ + Sbjct: 310 FDFDRTAPRRALGIVAPALSPDGTRVVFQALNR-------LWLMDVGGAPRPLTEGPYYA 362 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P +S +G R + K D+Y +D+ + A +R+T+ ++ ++SPD ++ F+ Sbjct: 363 QDPAWSRDGTRIAYASDKGGTADLYVLDVVTGAEQRVTSLPGAEVAPAWSPDGGRLAFQ- 421 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAI 373 D+ G V+ +++ A P WS G +A +F I Sbjct: 422 DQAGATH--VLDLATGAVRQVVAPLFAP-GRPTWSADGRTLALAALKPYTRRFREGTSQI 478 Query: 374 GVMKKDGSQERL-------LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + R + P WSP G +L F + + + +D +GR Sbjct: 479 LTVDVESGATRYQEAAPFESLSTRGDDGPVWSPDGTALAFVMQ----STLWVMPVDASGR 534 Query: 427 NE----TLINTPAYASDPQWVG 444 + + P A P W G Sbjct: 535 AAGPAVRITSEPTDA--PTWSG 554 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 58/339 (17%), Positives = 104/339 (30%), Gaps = 68/339 (20%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 + + D++ R V+ +G + M DG ++R LT EPRFSP+ + Sbjct: 83 LEPARPDYSPRGDLVAFQAYAGGT-FHIWTMRPDGTDVRQLTSGHGD-DREPRFSPDGTR 140 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDI 284 +A+++ + A R + P ++ +G S I Sbjct: 141 IAFSSDRAFQGSYDVWVADVATGALTRWTEAPADEFEPAWTPDGGEIAFVSGAGSTGTAI 200 Query: 285 YSVDLQSNATERLTNTLFIN-ISASYSPDSSQIV---FESDR-----EGKE--------- 326 +VD T S S SPD + + F ++R +G Sbjct: 201 EAVDAAGTRRTLATAPAGARLSSPSISPDGAHLAWIQFAANRSRLVVDGAPASPFEDVFP 260 Query: 327 -----------------QLYVMQSNGSDQKRISQDKEASYFDPVW--------------- 354 + V + ++++ P W Sbjct: 261 FPAHWLSPRTLLYTADGGIRVTDLDAGTSEQVAFQATFRLVRPAWERKRFDFDRTAPRRA 320 Query: 355 --------SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 SP G + F + + +M G+ L Q P WS G + + Sbjct: 321 LGIVAPALSPDGTRVVFQALN----RLWLMDVGGAPRPLTEGPYYAQDPAWSRDGTRIAY 376 Query: 407 SRKKDGDTGSKLYSID-LNGRNETLINTPAYASDPQWVG 444 + K G + LY +D + G + + + P P W Sbjct: 377 ASDKGGT--ADLYVLDVVTGAEQRVTSLPGAEVAPAWSP 413 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L +MD GA +P +S + ++AYA+ D +Y++D + A Sbjct: 341 NRLWLMDVGGA--PRPLTEGPYYAQDPAWSRDGTRIAYAS-DKGGTADLYVLDV-VTGAE 396 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ + +AP +S +G R +D+A + +DL + A ++ LF ++S Sbjct: 397 QRVTSLPGAEVAPAWSPDGGRLAF---QDQAGATHVLDLATGAVRQVVAPLFAPGRPTWS 453 Query: 311 PDSSQIVFES-------DREGKEQLYVMQSNGSDQK-----RISQDKEASYFDPVWSPQG 358 D + + REG Q+ + + PVWSP G Sbjct: 454 ADGRTLALAALKPYTRRFREGTSQILTVDVESGATRYQEAAPFESLSTRGDDGPVWSPDG 513 Query: 359 DLIAFTKFSGEKFAIGVMKKD------GSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +AF S + VM D G R+ E ++ APTWS R L++ Sbjct: 514 TALAFVMQS----TLWVMPVDASGRAAGPAVRITSEPTD--APTWSGDSRRLLYLSS 564 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 12/192 (6%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + D+ V R +R+ + P +S G Sbjct: 51 SPDGRDLVL------DLQGVLWSLPRGGGEARRLTDGLLEPARPDYSPRGDLVAFQAYAG 104 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EGKEQLYVMQSNGSD 337 I+++ +LT+ + +SPD ++I F SDR +G ++V Sbjct: 105 GTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDRAFQGSYDVWVADVATGA 164 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV--EDSNLQA 394 R + A F+P W+P G IAF +G AI + G++ L + L + Sbjct: 165 LTR-WTEAPADEFEPAWTPDGGEIAFVSGAGSTGTAIEAVDAAGTRRTLATAPAGARLSS 223 Query: 395 PTWSPSGRSLIF 406 P+ SP G L + Sbjct: 224 PSISPDGAHLAW 235 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 7/154 (4%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 A +T N++ + SPD +V D +G L+ + G + +R++ D P Sbjct: 34 AVRDITVHEGTNVAVTASPDGRDLVL--DLQGV--LWSLPRGGGEARRLT-DGLLEPARP 88 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 +SP+GDL+AF ++G F I M+ DG+ R L + + P +SP G + FS + Sbjct: 89 DYSPRGDLVAFQAYAGGTFHIWTMRPDGTDVRQLTSGHGDDREPRFSPDGTRIAFSSDRA 148 Query: 412 GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D+ G PA +P W Sbjct: 149 FQGSYDVWVADVATGALTRWTEAPADEFEPAWTP 182 >gi|254517195|ref|ZP_05129252.1| X-Pro dipeptidyl-peptidase, S15 family [gamma proteobacterium NOR5-3] gi|219674033|gb|EED30402.1| X-Pro dipeptidyl-peptidase, S15 family [gamma proteobacterium NOR5-3] Length = 654 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 109/306 (35%), Gaps = 56/306 (18%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + + + DG +T S D PR+SP+ + +++ ED R+ Sbjct: 51 DKSRTQIWMAPTDGGEAIPMT-SVDSSASRPRWSPDNKYLSFTASRGEDAKTQVWSLNRL 109 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISV-----------QKDEAMDIYSVD------- 288 ++ N + + +S +G R L+++ + D+ + +D Sbjct: 110 GGDAMQVTNVKQGVSDFAWSPDGSRLLLTIKDARPADLTEDEDDDKPRPHVIDRIQFKQD 169 Query: 289 ----------------LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------ 326 +A ++T + + +SPD + F SDR Sbjct: 170 YQGYIDRRRKHFYVYTPGDDAPVQITFGDYDDEDPVWSPDGKSVAFVSDRSENPDLYYGS 229 Query: 327 QLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFSGEKF---------AIGVM 376 ++V+ + + + + P WSP G IA+ +G + + Sbjct: 230 NIWVVAVDDENHRLQKVTADSGKERSPTWSPDGQSIAYISSTGPDVGGSALTPTRRLALT 289 Query: 377 KKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-INT 433 + DG ++L D NL P ++ GR + F + +G L SI ++G++ + Sbjct: 290 RVDGGARQILTPDLDRNLSDPQFTDDGRRISFRLEDEGQV--HLASIGVDGQSFRRDLEG 347 Query: 434 PAYASD 439 P D Sbjct: 348 PVTVRD 353 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 103/288 (35%), Gaps = 59/288 (20%) Query: 212 QILFEPRFSPNQQKVAYAT----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q + +P+FSP+ + VAY +++ M + + S PR+S Sbjct: 25 QRVGDPQFSPDGRWVAYTVTQKDLEEDKSRTQIWMAPTDGGEAIPMTSVDSSASRPRWSP 84 Query: 268 NGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV-------- 317 + K + + D ++S++ ++TN ++SPD S+++ Sbjct: 85 DNKYLSFTASRGEDAKTQVWSLNRLGGDAMQVTNVKQGVSDFAWSPDGSRLLLTIKDARP 144 Query: 318 ---------------------FESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFD 351 F+ D +G ++ YV +I+ + D Sbjct: 145 ADLTEDEDDDKPRPHVIDRIQFKQDYQGYIDRRRKHFYVYTPGDDAPVQITF-GDYDDED 203 Query: 352 PVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERL---LVEDSNLQAPTWSPSGR 402 PVWSP G +AF E I V+ D RL + ++PTWSP G+ Sbjct: 204 PVWSPDGKSVAFVSDRSENPDLYYGSNIWVVAVDDENHRLQKVTADSGKERSPTWSPDGQ 263 Query: 403 SLIFSRKKDGDTGS-------KLYSIDLNGRNETLIN--TPAYASDPQ 441 S+ + D G +L ++G ++ SDPQ Sbjct: 264 SIAYISSTGPDVGGSALTPTRRLALTRVDGGARQILTPDLDRNLSDPQ 311 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 53/236 (22%) Query: 260 ILAPRFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + P+FS +G+ +V + + I+ +T+ +SPD+ Sbjct: 27 VGDPQFSPDGRWVAYTVTQKDLEEDKSRTQIWMAPTDGGEAIPMTSVDSSASRPRWSPDN 86 Query: 314 SQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA--------- 362 + F + R + K Q++ + G D +++ K+ D WSP G + Sbjct: 87 KYLSFTASRGEDAKTQVWSLNRLGGDAMQVTNVKQG-VSDFAWSPDGSRLLLTIKDARPA 145 Query: 363 ---------------------------FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + + F + D + ++ D + + P Sbjct: 146 DLTEDEDDDKPRPHVIDRIQFKQDYQGYIDRRRKHFYVYT-PGDDAPVQITFGDYDDEDP 204 Query: 396 TWSPSGRSLIFSRKKDGDT----GSKLYSIDLNGRNETL---INTPAYASDPQWVG 444 WSP G+S+ F + + GS ++ + ++ N L P W Sbjct: 205 VWSPDGKSVAFVSDRSENPDLYYGSNIWVVAVDDENHRLQKVTADSGKERSPTWSP 260 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 115/321 (35%), Gaps = 62/321 (19%) Query: 170 KGDFNSRILFVSESVVSGI-IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 + ++ ++S + G K + ++R G + +T + + +SP+ ++ Sbjct: 79 RPRWSPDNKYLSFTASRGEDAKTQVWSLNRLGGDAMQVTNVKQGVSDF-AWSPDGSRLLL 137 Query: 229 ATYDDEDI--------------------------------LRVYLMDTRIDRAPKRIGNF 256 D + + + T D AP +I Sbjct: 138 TIKDARPADLTEDEDDDKPRPHVIDRIQFKQDYQGYIDRRRKHFYVYTPGDDAPVQITFG 197 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIY--------SVDLQSNATERLTNTLFINISAS 308 P +S +GK + E D+Y +VD +++ +++T S + Sbjct: 198 DYDDEDPVWSPDGKSVAFVSDRSENPDLYYGSNIWVVAVDDENHRLQKVTADSGKERSPT 257 Query: 309 YSPDSSQIVFES----DREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 +SPD I + S D G +L + + +G ++ ++ D + + DP ++ G Sbjct: 258 WSPDGQSIAYISSTGPDVGGSALTPTRRLALTRVDGGARQILTPDLDRNLSDPQFTDDGR 317 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT----WSPSGRSLIFSRKKDGDTG 415 I+F + + + DG R +L+ P + SG ++ + D Sbjct: 318 RISFRLEDEGQVHLASIGVDGQSFRR-----DLEGPVTVRDVARSGERIVVLAE-SADQP 371 Query: 416 SKLYSIDLNGRNETLINTPAY 436 S LY++ +G L + A Sbjct: 372 SNLYTLS-DGYLSALTSVNAE 391 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 10/81 (12%) Query: 374 GVMKKDGSQERLLVEDSNL-----QAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLN 424 V + S++RLL D + P +SP GR + ++ + + + ++++ + Sbjct: 4 AVQAQPESEQRLLTIDDLMAIQRVGDPQFSPDGRWVAYTVTQKDLEEDKSRTQIWMAPTD 63 Query: 425 GRNETLINT-PAYASDPQWVG 444 G + + + AS P+W Sbjct: 64 GGEAIPMTSVDSSASRPRWSP 84 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 77/216 (35%), Gaps = 29/216 (13%) Query: 175 SRILFVSESVVSGIIK-----NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 I ++S + L + DG + LTP D+ L +P+F+ + +++ Sbjct: 263 QSIAYISSTGPDVGGSALTPTRRLALTRVDGGARQILTPDLDRNLSDPQFTDDGRRI--- 319 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVD 288 ++ ED +V+L +D R + + + +G+R ++ + D+ ++Y+ Sbjct: 320 SFRLEDEGQVHLASIGVDGQSFR-RDLEGPVTVRDVARSGERIVVLAESADQPSNLYT-- 376 Query: 289 LQSNATERLTNTLFI----NISASY------SPDSSQI-VF----ESDREGKEQLYVMQS 333 L LT+ S D +++ F EGK ++ Sbjct: 377 LSDGYLSALTSVNAELLAGVARPEVEKREFASADGTKVEAFFVKPVGYEEGKRYPTILWL 436 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +G + S +++ G + G Sbjct: 437 HGGPASQFSY--SYRDTAQLFAANGYAVIMPNPRGS 470 >gi|319650056|ref|ZP_08004205.1| YuxL protein [Bacillus sp. 2_A_57_CT2] gi|317398237|gb|EFV78926.1| YuxL protein [Bacillus sp. 2_A_57_CT2] Length = 661 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 54/263 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + +P+ S N +A+ D ++ ++T P + + +PR+S + Sbjct: 18 VADPQLSLNGNDLAFVETRMLDEENTYSSNIFYLNTIKGNMPVQWTYGKHRNHSPRWSPD 77 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--------- 319 G +D IY + +LT+ +SPD +IVF Sbjct: 78 GDSIAFVSDRDGKSQIYVMSKAGGEARQLTHCANGASKPVWSPDGKKIVFNLSVKPGEDA 137 Query: 320 ------------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYF 350 SD +G Q+ ++ ++++ E Y Sbjct: 138 ETKENQEKQTDRPLPLEIEKMKHKSDAQGFWSGRYSQVALIDIETGGMEQLTS-GEHDYQ 196 Query: 351 DPVWSPQGDLIAFTK--FSGEKF----AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRS 403 WSP G IA T + F + ++ + + + + TWSP G+ Sbjct: 197 LQDWSPDGKWIAVTADLSEDKDFSFLSDVYIIHLETKDMKRITNGKGYFGSATWSPDGKY 256 Query: 404 L-IFS--RKKDGDTGSKLYSIDL 423 + +F R+ + T +K++ +L Sbjct: 257 IGLFGHEREYENATHTKVWVYNL 279 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 70/291 (24%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N+ PR+SP+ +A+ + D ++Y+M ++ +++ + + Sbjct: 56 GNMPVQWTYGKHRNHSPRWSPDGDSIAFVSDRDGKS-QIYVM-SKAGGEARQLTHCANGA 113 Query: 261 LAPRFSSNGKRALISVQK--------------------------------------DEAM 282 P +S +GK+ + ++ Sbjct: 114 SKPVWSPDGKKIVFNLSVKPGEDAETKENQEKQTDRPLPLEIEKMKHKSDAQGFWSGRYS 173 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK------EQLYVMQSNGS 336 + +D+++ E+LT+ +SPD I +D +Y++ Sbjct: 174 QVALIDIETGGMEQLTSGEHDYQLQDWSPDGKWIAVTADLSEDKDFSFLSDVYIIHLETK 233 Query: 337 DQKRISQDKEASYFDPVWSPQGDLI-AFTKFS----GEKFAIGVMKKDGSQERLLVEDSN 391 D KRI+ + + + WSP G I F + V + + L +S+ Sbjct: 234 DMKRIT-NGKGYFGSATWSPDGKYIGLFGHEREYENATHTKVWVYNLEFGNLQCLTAESD 292 Query: 392 LQAPT----------------WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + A W+ RS F G+T +Y L+G Sbjct: 293 ILAGDYAIGDFQQGTVTPGILWAEDSRSFYFLATDHGNT--VVYYGSLDGE 341 >gi|239993670|ref|ZP_04714194.1| Acylaminoacyl-peptidase [Alteromonas macleodii ATCC 27126] Length = 708 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 107/284 (37%), Gaps = 36/284 (12%) Query: 176 RILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +V S S + ++ + DG + R L S+ + R+SP+ ++AY + ++ Sbjct: 73 YVAYVRRSNDIMSDSSRANVWLASVDGKSHRPLLSSKKSY-YSIRWSPDGSRLAYLSNEE 131 Query: 234 EDI-LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 L V MDT + + S I +S +GK ++ D L Sbjct: 132 GKPQLYVRWMDTGQTALVTNVTSNPSNI---TWSPDGKHIAFTMSVDAKEK----PLDIK 184 Query: 293 ATERLTNTLFINISASYSPDSSQIV---FESDREG-----KEQLYVMQSNGSDQKRISQD 344 ++ A +SP I +++D G ++++ ++G ++++ Sbjct: 185 MPKK-------PDGAKWSPSFQYITKARYQADGRGILEPAYTHIFIVPADGGTARQLTSG 237 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFA-------IGVMKKDGSQERLLVEDSNLQAPTW 397 +SP D I F+ + + I + G+ +L + +P Sbjct: 238 NYHHNGRLSFSPDSDKIYFSANRSDNWEYEPVEGDIFSVDMMGNIAQLTNDKGLESSPVV 297 Query: 398 SPSGRSLIFSRKKDGD---TGSKLYSIDLNGRNETLINTPAYAS 438 SP G+ + ++R+ D S LY + +G + + S Sbjct: 298 SPDGKHIAYARRDDEKVMYKNSYLYVMKSDGTDAKNLTKDVDNS 341 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 17/210 (8%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED----ILRVYLMDTRIDR 248 + ++ DG R LT FSP+ K+ ++ ++ + + + Sbjct: 221 IFIVPADGGTARQLTSGNYHHNGRLSFSPDSDKIYFSANRSDNWEYEPVEGDIFSVDMMG 280 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----AMDIYSVDLQSNATERLTNTLFI 303 ++ N + + +P S +GK + + DE +Y + + LT + Sbjct: 281 NIAQLTNDKGLESSPVVSPDGKHIAYARRDDEKVMYKNSYLYVMKSDGTDAKNLTKDVDN 340 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP----VWSPQGD 359 ++S + D+ + F+ G Q+ V+ +GS + + P + D Sbjct: 341 SVSNFHWKDNKHVYFQQSVRGLAQVDVVSLSGSVKAVAKGLGGTTLGRPYVFGTYHAVDD 400 Query: 360 LIAFTK-FSGEKFAIGVMKKDGSQERLLVE 388 ++A+TK + + V ER L Sbjct: 401 VVAYTKGRTDRPADLYV---TTRNERQLTA 427 >gi|298675386|ref|YP_003727136.1| WD40 domain-containing protein beta Propeller [Methanohalobium evestigatum Z-7303] gi|298288374|gb|ADI74340.1| WD40 domain protein beta Propeller [Methanohalobium evestigatum Z-7303] Length = 616 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 25/268 (9%) Query: 191 NSLCVMDRDGANIRYLTPS----------RDQILFEPRFSPNQQKVAYATYD---DEDIL 237 +L +M+ DG +I+ + D+++ P +SP+ Y + + + +IL Sbjct: 100 RALYIMNADGFDIKRIAWGEYTPYTRKVGNDKLIGLPSWSPDGDVFTYTSEELAKNGNIL 159 Query: 238 RVYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNAT 294 +L+ + G+F S + ++S +G L +K E Y +DL N T Sbjct: 160 GEFLIVDADNLNTIEKGSFISNKIDFIKKWSPDGSYLLYRGYKKGEGPKCYLLDLTRNIT 219 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 R T + ++SP ++I F + +G E +V + + K I K +S +P+W Sbjct: 220 RRFPITQYNPEDITWSPKGNKIAFLGEEKGNESAFVYNLDNGNLKNIFSTKNSSIHNPLW 279 Query: 355 SPQGDLIAFTKFSGEKF-AIGVMK---KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 SP G +AF+K + V+ +G +L + W L+++ Sbjct: 280 SPDGRKLAFSKIEDNNVKDVYVIDINVVNGRPYKLTTLHGGILV-EWL-DSEKLLYTEYS 337 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYAS 438 D LYSI +N RN+TL+ S Sbjct: 338 PED---NLYSISVNSRNKTLLYNSTNES 362 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 34/235 (14%) Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-------------SVQKDEAMDIYSVDL 289 DT R+ + +S +G RAL+ + + E +Y ++ Sbjct: 48 DTLELVNKSRLKVDGGPAMYIHWSPDGTRALVLTKLTVHAKNKPEATTRSEIRALYIMNA 107 Query: 290 QSNATERL--------TNTLFIN---ISASYSPDSSQIVFESDREGKE-----QLYVMQS 333 +R+ T + + S+SPD + S+ K + ++ + Sbjct: 108 DGFDIKRIAWGEYTPYTRKVGNDKLIGLPSWSPDGDVFTYTSEELAKNGNILGEFLIVDA 167 Query: 334 NGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERL-LVEDS 390 + + ++ S F WSP G + + + GE ++ + R + Sbjct: 168 DNLNTIEKGSFISNKIDFIKKWSPDGSYLLYRGYKKGEGPKCYLLDLTRNITRRFPITQY 227 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 N + TWSP G + F ++ G+ + +Y++D NG + + +T + +P W Sbjct: 228 NPEDITWSPKGNKIAFLGEEKGNESAFVYNLD-NGNLKNIFSTKNSSIHNPLWSP 281 >gi|73669137|ref|YP_305152.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str. Fusaro] gi|72396299|gb|AAZ70572.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str. Fusaro] Length = 615 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 109/264 (41%), Gaps = 20/264 (7%) Query: 175 SRILFVSESVVSGII-KNSLCVMDRDGANIRYLTPSRDQILFEP-RFSPNQQKVAYATYD 232 S+I ++ + ++ L +M+ +G + L + + + P K+ YA Sbjct: 97 SKISYIENRYDTAAGPRSDLWIMNSNGEGKKQLLDTIWYRYYYIYTWFPTGSKILYAEIY 156 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS------ 286 +E + MD+ IGN + S + + I +D Y Sbjct: 157 EEIGGSYWEMDSD-GSNKHNIGNM-GIANGIALSPDASKIAICAHGPADVDYYIDVGKVG 214 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVF------ESDREGKEQLYVMQSNGSDQKR 340 DL S +T+ S ++PD S+IV+ + ++Y+++++G+ + + Sbjct: 215 KDLTSFRYGLITHQTQSRQSQIWAPDGSKIVYYAGKNESYYEDENSEIYIVKADGTGRIQ 274 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSP 399 ++ D A+ PV+SP G I F I +M DG + L D ++ P WSP Sbjct: 275 LTSDS-ANDNSPVFSPDGSKIVFVSDKAGNEDIWIMDADGKNKVQLTSDPASDSFPVWSP 333 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDL 423 G+ + F + G + +Y++ L Sbjct: 334 DGKKIAFWSNRGG--NNNIYTLTL 355 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 109/279 (39%), Gaps = 27/279 (9%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDD----EDILRVYLM 242 +N L + DG LT ++ + +SP+ K++Y +++M Sbjct: 60 SRENGLYKVFSDGTGEMKLTSTKGKNFTSDYAWSPDGSKISYIENRYDTAAGPRSDLWIM 119 Query: 243 DTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNT 300 ++ + + + + + G + L + +E + +D + + N Sbjct: 120 NSNGEGKKQLLDTIWYRYYYIYTWFPTGSKILYAEIYEEIGGSYWEMDSDGSNKHNIGN- 178 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-------SYFDPV 353 + I + SPD+S+I + Y+ G K ++ + S + Sbjct: 179 MGIANGIALSPDASKIAICAHGPADVDYYI--DVGKVGKDLTSFRYGLITHQTQSRQSQI 236 Query: 354 WSPQGDLIAF------TKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIF 406 W+P G I + + + E I ++K DG+ L DS N +P +SP G ++F Sbjct: 237 WAPDGSKIVYYAGKNESYYEDENSEIYIVKADGTGRIQLTSDSANDNSPVFSPDGSKIVF 296 Query: 407 SRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 K G ++ +D +G+N+ L + PA S P W Sbjct: 297 VSDKAG--NEDIWIMDADGKNKVQLTSDPASDSFPVWSP 333 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 90/246 (36%), Gaps = 32/246 (13%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRY-LTPSRDQILFEPRFSPNQQKVAYA--- 229 S+I + + + +D + RY L + Q ++P+ K+ Y Sbjct: 191 ASKIAICAHGPADVDYYIDVGKVGKDLTSFRYGLITHQTQSRQSQIWAPDGSKIVYYAGK 250 Query: 230 --TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 +Y +++ +Y++ + + + + +P FS +G + + K DI+ + Sbjct: 251 NESYYEDENSEIYIVKADGTGRIQ-LTSDSANDNSPVFSPDGSKIVFVSDKAGNEDIWIM 309 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS-------------- 333 D +LT+ + +SPD +I F S+R G +Y + Sbjct: 310 DADGKNKVQLTSDPASDSFPVWSPDGKKIAFWSNRGGNNNIYTLTLENEKTPVAAFCASQ 369 Query: 334 -NGSDQKRISQDKEASYFDPVWSP---QGDLI-------AFTKFSGEKFAIGVMKKDGSQ 382 +G+ ++S +++ WS G ++K ++ V G+ Sbjct: 370 TSGNAPLKVSFTDKSTGTPTSWSWSFGDGKTSTLKNPLHIYSKAGKYTVSLTVKNAAGTN 429 Query: 383 ERLLVE 388 + + + Sbjct: 430 MKTITK 435 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 94/271 (34%), Gaps = 68/271 (25%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V + D ++ + ++ P +S +GK L S + +Y V +L Sbjct: 23 NVAVADDLEAEKLTKVASNVALDSNPVWSPDGKEILFSRENG----LYKVFSDGTGEMKL 78 Query: 298 TNTLFINISA--SYSPDSSQIVFESDR-----EGKEQLYVMQSNGSDQKRISQDKEASYF 350 T+T N ++ ++SPD S+I + +R + L++M SNG +K++ Y+ Sbjct: 79 TSTKGKNFTSDYAWSPDGSKISYIENRYDTAAGPRSDLWIMNSNGEGKKQLLDTIWYRYY 138 Query: 351 D-PVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQER------------------------ 384 W P G I + + E + M DGS + Sbjct: 139 YIYTWFPTGSKILYAEIYEEIGGSYWEMDSDGSNKHNIGNMGIANGIALSPDASKIAICA 198 Query: 385 --------------------------LLVEDSNLQAPTWSPSGRSLIFSRKKD----GDT 414 + + + Q+ W+P G +++ K+ D Sbjct: 199 HGPADVDYYIDVGKVGKDLTSFRYGLITHQTQSRQSQIWAPDGSKIVYYAGKNESYYEDE 258 Query: 415 GSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 S++Y + +G L + A + P + Sbjct: 259 NSEIYIVKADGTGRIQLTSDSANDNSPVFSP 289 >gi|56459628|ref|YP_154909.1| acylaminoacyl-peptidase [Idiomarina loihiensis L2TR] gi|56178638|gb|AAV81360.1| Acylaminoacyl-peptidase [Idiomarina loihiensis L2TR] Length = 671 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 117/327 (35%), Gaps = 65/327 (19%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G++ + + S + + L DG +IR LT +P +SP+ ++A Sbjct: 40 HPSGEW-TVFVRQSMDINNDRKVGRLWASLPDG-DIRPLT-GSQGSESQPVWSPSGDRLA 96 Query: 228 YATYDDEDI-LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV---------- 276 Y + + + +Y +D+ A ++ S + +S +G + S+ Sbjct: 97 YVSTETGSPQVHIYWVDSGDSAAVTQLTQAPSGL---SWSPDGSQIAFSMFTPKSQPAPV 153 Query: 277 ------------------------------QKDEAMDIYSVDLQSNATERLTNTLFINIS 306 KD IY + + +LT+ F + Sbjct: 154 SLPGKPEGADWTAAPKYIDKGNYRYDGGGYAKDGHQQIYVIPATGGSPRQLTDEEFNHGG 213 Query: 307 -ASYSPDSSQIVFESDREG-------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 S+SPDS I F ++R ++Y + + + I+ +++ P SP G Sbjct: 214 QLSWSPDSKHIFFSANRRDDAFRQPVNSEIYRLTLSTKEITAIT-ERDGPDGSPKVSPNG 272 Query: 359 DLIAFTKFSGEKF-----AIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKD 411 + IAFT + K + VM DGS LL D + W + F+ + Sbjct: 273 EKIAFTGYDDTKMSFQASNLYVMDLDGSDVELLTGDLDHSVTGFEWDRDSEGVYFTYDNN 332 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYAS 438 G +L DL+G + L N S Sbjct: 333 G--VGQLARTDLDGDHTQLTNRVGGLS 357 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 91/284 (32%), Gaps = 60/284 (21%) Query: 212 QILFEPRFSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + P P+ + + D L + D + + + P +S + Sbjct: 32 EYASSPTIHPSGEWTVFVRQSMDINNDRKVGRLWASLPDGDIRPLTGSQGSESQPVWSPS 91 Query: 269 GKRALISVQKDEAMDIYSVDLQSN---ATERLTNTLFINISASYSPDSSQIVFE------ 319 G R + + ++ + S A +LT S+SPD SQI F Sbjct: 92 GDRLAYVSTETGSPQVHIYWVDSGDSAAVTQLTQAPS---GLSWSPDGSQIAFSMFTPKS 148 Query: 320 ----------------------------------SDREGKEQLYVMQSNGSDQKRISQDK 345 ++G +Q+YV+ + G ++++ ++ Sbjct: 149 QPAPVSLPGKPEGADWTAAPKYIDKGNYRYDGGGYAKDGHQQIYVIPATGGSPRQLTDEE 208 Query: 346 EASYFDPVWSPQGDLIAFT-KFSGEKF------AIGVMKKDGSQERLLVE-DSNLQAPTW 397 WSP I F+ + F I + + + E D +P Sbjct: 209 FNHGGQLSWSPDSKHIFFSANRRDDAFRQPVNSEIYRLTLSTKEITAITERDGPDGSPKV 268 Query: 398 SPSGRSLIFSRKKDGDT---GSKLYSIDLNGRNETLINTPAYAS 438 SP+G + F+ D S LY +DL+G + L+ S Sbjct: 269 SPNGEKIAFTGYDDTKMSFQASNLYVMDLDGSDVELLTGDLDHS 312 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 54/365 (14%), Positives = 111/365 (30%), Gaps = 71/365 (19%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 D+ + +++ R + + + Q + GD R+ +VS S + Sbjct: 54 DINNDRKVGRLWASLPDGDIRPLTGSQGSES-QPVWSPSGD---RLAYVSTETGSPQVHI 109 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL-------------- 237 V D A + LT + + +SP+ ++A++ + + Sbjct: 110 -YWVDSGDSAAVTQLTQAPSGL----SWSPDGSQIAFSMFTPKSQPAPVSLPGKPEGADW 164 Query: 238 -------------------------RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 ++Y++ + + +S + K Sbjct: 165 TAAPKYIDKGNYRYDGGGYAKDGHQQIYVIPATGGSPRQLTDEEFNHGGQLSWSPDSKHI 224 Query: 273 LISVQKDE-------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S + + +IY + L + +T + S SP+ +I F + K Sbjct: 225 FFSANRRDDAFRQPVNSEIYRLTLSTKEITAITERDGPDGSPKVSPNGEKIAFTGYDDTK 284 Query: 326 E-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 LYVM +GSD + ++ D + S W + + FT + + DG Sbjct: 285 MSFQASNLYVMDLDGSDVELLTGDLDHSVTGFEWDRDSEGVYFTYDNNGVGQLARTDLDG 344 Query: 381 SQERLLVEDSNLQAPT------WS-PSGRSLIFS-RKKDGDTGSKLYSIDLNGRNETLIN 432 +L L +S G + F+ L+ +G + L Sbjct: 345 DHTQLTNRVGGLSYARPYGGGDFSVAKGDRIAFTISNPMRPAELALWD---DGDVQQLTR 401 Query: 433 TPAYA 437 A Sbjct: 402 LNEDA 406 Score = 36.5 bits (83), Expect = 9.8, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Query: 394 APTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +PT PSG +F R+ + +L++ +G L + S P W Sbjct: 36 SPTIHPSGEWTVFVRQSMDINNDRKVGRLWASLPDGDIRPLTGSQGSESQPVWSP 90 >gi|262197963|ref|YP_003269172.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262081310|gb|ACY17279.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1623 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 31/307 (10%) Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE-----SVVSGIIKNSLCVMDRDGAN 202 PA WR++A I Q + +S + F + V + ++ V DG Sbjct: 952 PAPWRELAQGA---IQQQVADVVLRHDSSVWFAAYSPDGARVATATFDGTVRVWRADGTG 1008 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + + FSP+ +VA A+YD V + D P + + Sbjct: 1009 EPLVLGKHENRVLSLTFSPDGARVASASYDG----TVRVWDADGASPPTILSGHEMALYT 1064 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 FS +G R + + ++ I++ D S T L SA +SPD ++IV S+ Sbjct: 1065 VDFSPDGARIV-TAAREGVARIWNAD-GSGETVVLRGHEGPVRSARFSPDGARIVTTSE- 1121 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + + V ++GS + R+ + A+ + +SP G +A G V D Sbjct: 1122 --DQTVRVWNADGSGEPRVLRGHTATVYSARFSPDGRRLASASLDGSA---RVWDLDHPD 1176 Query: 383 ERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL------INTP 434 E ++ ++ A +SP GR ++ + D ++++ ++ G + TL +N+ Sbjct: 1177 ESVIFNGHQGDVYAAVFSPDGRRVVTAS---ADGTARVWDLERPGHSTTLRGHRDGVNSA 1233 Query: 435 AYASDPQ 441 ++ D Sbjct: 1234 DFSPDGA 1240 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 161/474 (33%), Gaps = 97/474 (20%) Query: 51 AFTKFVSIDELGGKVSEVVSKDLQR--SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGA 108 A + ++ + +V++VV L+ S F S D + D R W + G Sbjct: 953 APWRELAQGAIQQQVADVV---LRHDSSVWFAAYSPDGARVATATFDGTVRV--WRADGT 1007 Query: 109 -QVLVTG-------RVIKEGKD------RLRVEFRLWD--------VKDRKQIIGKKFFS 146 + LV G + R+WD + ++ Sbjct: 1008 GEPLVLGKHENRVLSLTFSPDGARVASASYDGTVRVWDADGASPPTILSGHEMALYTVDF 1067 Query: 147 SPASWRKIAHTI--------SDDIYQSIT---GEKGDFNSRILFVSESVVSGIIKNSLCV 195 SP R + +D +++ E ++R +V+ ++ V Sbjct: 1068 SPDGARIVTAAREGVARIWNADGSGETVVLRGHEGPVRSARFSPDGARIVTTSEDQTVRV 1127 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVA---------------------------- 227 + DG+ + ++ RFSP+ +++A Sbjct: 1128 WNADGSGEPRVLRGHTATVYSARFSPDGRRLASASLDGSARVWDLDHPDESVIFNGHQGD 1187 Query: 228 -YATYDDEDILRVY---------LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 YA D RV + D + R + + FS +G R L + Sbjct: 1188 VYAAVFSPDGRRVVTASADGTARVWDLERPGHSTTLRGHRDGVNSADFSPDGARIL-TAS 1246 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +D I++V + T L +A +SPD +++ + R+ +++ ++G+ Sbjct: 1247 EDRTARIWNV-AELAYTVHLRGHEQEVHAAEFSPDGARVA-TASRDHTARIW--NADGTG 1302 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAP 395 + + + E V+SP G + V DGS E +++ L A Sbjct: 1303 EPVVLRGHEDQLMGAVFSPDGARVVTVSLDKTA---RVWNADGSGEPVVLRGHEDTLYAA 1359 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL------INTPAYASDPQWV 443 +SP G ++ + D +++++ D +G L + + ++ + ++V Sbjct: 1360 AFSPDGTRVVTASL---DKTARVWNADGSGEPLVLRGHEHYLTSATFSPEGEYV 1410 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 93/255 (36%), Gaps = 29/255 (11%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V + ++ + + DG + + L FSP+ +V + D + Sbjct: 1283 RVATASRDHTARIWNADGTGEPVVLRGHEDQLMGAVFSPDGARVVTVSLDK----TARVW 1338 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + P + + A FS +G R +++ D+ +++ D S L Sbjct: 1339 NADGSGEPVVLRGHEDTLYAAAFSPDGTR-VVTASLDKTARVWNAD-GSGEPLVLRGHEH 1396 Query: 303 INISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SA++SP+ ++ S DR + V ++GS Q R+ + + + +P G+ + Sbjct: 1397 YLTSATFSPEGEYVLTTSYDRT----VRVWNADGSGQPRLLGRHQDAVYSLEIAPDGERV 1452 Query: 362 AFTKFSGEKFAIG-----------VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 A T + I ++ GS + + P G ++ Sbjct: 1453 A-TSSADGVVRIWRSWRAADPGPPILLPHGSAASIGTGSGTG---AFHPDGTRIV---TV 1505 Query: 411 DGDTGSKLYSIDLNG 425 GD ++++ D +G Sbjct: 1506 TGDDLLRVWNSDGSG 1520 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 18/243 (7%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 VV+ + + V + DG+ + + L+ FSP+ +V A+ D + Sbjct: 1325 RVVTVSLDKTARVWNADGSGEPVVLRGHEDTLYAAAFSPDGTRVVTASLDK----TARVW 1380 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + P + + + FS G+ L + D + +++ D S L Sbjct: 1381 NADGSGEPLVLRGHEHYLTSATFSPEGEYVL-TTSYDRTVRVWNAD-GSGQPRLLGRHQD 1438 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQ--SNGSDQKRISQDKEAS----YFDPVWSP 356 S +PD ++ S +G +++ ++ + AS + P Sbjct: 1439 AVYSLEIAPDGERVA-TSSADGVVRIWRSWRAADPGPPILLPHGSAASIGTGSGTGAFHP 1497 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDT 414 G I + V DGS + +L +++L +S G ++ + + Sbjct: 1498 DGTRIVTVT---GDDLLRVWNSDGSGQPVLFRVPNAHLFTAVFSDDGERVVTASDSEFHA 1554 Query: 415 GSK 417 + Sbjct: 1555 ATD 1557 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 25/215 (11%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D +Y + G VV+ + + V + DG+ + + L F Sbjct: 1354 DTLYAAAFSPDG----------TRVVTASLDKTARVWNADGSGEPLVLRGHEHYLTSATF 1403 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP + V +YD V + + P+ +G + + + + +G+R + D Sbjct: 1404 SPEGEYVLTTSYDR----TVRVWNADGSGQPRLLGRHQDAVYSLEIAPDGERVA-TSSAD 1458 Query: 280 EAMDIYSV--DLQSNATERLTNTLFINIS-----ASYSPDSSQIVFESDREGKEQLYVMQ 332 + I+ L + +I ++ PD ++IV G + L V Sbjct: 1459 GVVRIWRSWRAADPGPPILLPHGSAASIGTGSGTGAFHPDGTRIV---TVTGDDLLRVWN 1515 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+GS Q + + A F V+S G+ + S Sbjct: 1516 SDGSGQPVLFRVPNAHLFTAVFSDDGERVVTASDS 1550 >gi|163845964|ref|YP_001634008.1| peptidase S41 [Chloroflexus aurantiacus J-10-fl] gi|222523689|ref|YP_002568159.1| peptidase S41 [Chloroflexus sp. Y-400-fl] gi|163667253|gb|ABY33619.1| peptidase S41 [Chloroflexus aurantiacus J-10-fl] gi|222447568|gb|ACM51834.1| peptidase S41 [Chloroflexus sp. Y-400-fl] Length = 1062 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 85/427 (19%), Positives = 150/427 (35%), Gaps = 64/427 (14%) Query: 76 SDVFNLIS-QDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF------ 128 S ++ ++IT D +DW + G V T + + G RV+ Sbjct: 69 SGDLYVLDLAGGPPRQITFQDEQCTPEDWANDGDAVFFTTAIEQMGSAIYRVKTSGGTPA 128 Query: 129 --------RLWDVKDRKQIIGKKFFSSPASW-RKIAHTIS---------DDIYQSITGEK 170 +L V F + W R+ H S D Y+++ Sbjct: 129 PIYLEPYEQLGQVAVSPDGTRLAFVNIRERWWRRGPHPFSSNEIWLGPTDPDYRALCQIA 188 Query: 171 GDFNSRILFVSESVV---SGIIKNSLCVMDRDG-----------ANIRYLTPSRDQILFE 216 G F R+++ + + + V D DG R +T RD L Sbjct: 189 GPFGQRLVYAGKLGWPLWAPDGQGLYIVCDSDGNENLWYLPLGEGEARQITHFRDGRLLF 248 Query: 217 PRFSPNQQKVAYATYDDEDILRV-----------YLMDTRIDRAPKRIGNFRSMILAPRF 265 P + + V D + R+ + R P R+ + S R Sbjct: 249 PAIA-RRNNVIVCERGDGQLWRIDPISGESVPVPIRVRIDSKRTPVRVERWTSGFSEVRL 307 Query: 266 SSNGKRALISVQKDEAMDIYSV----DLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 S +GK+ I + D D DL+ R+TNT S +++PDS ++++ SD Sbjct: 308 SPDGKKLAIVARGDVFADFADKETDRDLRQGPAFRVTNTPAREWSIAWAPDSQRLIYLSD 367 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R G+ +L+ + ++++++D P +P G IA+ + ++ I V++ Sbjct: 368 RYGEVELFAYDFSSGQEQQLTRDGR-PKMLPRIAPDGKSIAYIR---DQRIIEVIEVTDP 423 Query: 382 QERLLVEDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TPAYA 437 R + + A WSP R L F +D S +Y + G I + Sbjct: 424 SPREVCQARFAVAADLCWSPDSRYLAFIA-QDDRLFSNVYIVPAAGGEPRQITFLSNLDG 482 Query: 438 SDPQWVG 444 + W Sbjct: 483 GNLCWSP 489 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 9/211 (4%) Query: 218 RFSPNQQKVAYATYD--DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 R SP+ +K+A D R+ N + + ++ + +R + Sbjct: 306 RLSPDGKKLAIVARGDVFADFADKETDRDLRQGPAFRVTNTPAREWSIAWAPDSQRLIYL 365 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + +++++ D S ++LT + +PD I + D + + V++ Sbjct: 366 SDRYGEVELFAYDFSSGQEQQLTRDGRPKMLPRIAPDGKSIAYIRD---QRIIEVIEVTD 422 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQA 394 + + Q + A D WSP +AF F + ++ G + R + SNL Sbjct: 423 PSPREVCQARFAVAADLCWSPDSRYLAFIAQDDRLFSNVYIVPAAGGEPRQITFLSNLDG 482 Query: 395 P--TWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 WSP G +IF+ ++ +++ +DL Sbjct: 483 GNLCWSPDGSFIIFTTEQY-RLEAQIARVDL 512 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 86/244 (35%), Gaps = 29/244 (11%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 +L +P P+ + +A+ D V+L+ +R+ + PRFS +G Sbjct: 4 SQALLRQPALDPDGRLLAFIAAGD-----VWLVSIE-GGVAERLTAHPASHYGPRFSPDG 57 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQL 328 +R L S +D + D+Y +DL ++T ++ D + F + E + Sbjct: 58 QRILFSAGRDGSGDLYVLDLAGGPPRQITFQDEQCTPEDWANDGDAVFFTTAIEQMGSAI 117 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----------AIGVMKK 378 Y ++++G I + SP G +AF + I + Sbjct: 118 YRVKTSGGTPAPIYLEPYEQLGQVAVSPDGTRLAFVNIRERWWRRGPHPFSSNEIWLGPT 177 Query: 379 D----------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 D G + LV L P W+P G+ L DG L+ + L Sbjct: 178 DPDYRALCQIAGPFGQRLVYAGKLGWPLWAPDGQGLYIVCDSDG--NENLWYLPLGEGEA 235 Query: 429 TLIN 432 I Sbjct: 236 RQIT 239 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 55/332 (16%), Positives = 101/332 (30%), Gaps = 53/332 (15%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R AH S Y G RILF + SG L V+D G R +T +D Sbjct: 40 RLTAHPASH--YGPRFSPDG---QRILFSAGRDGSG----DLYVLDLAGGPPRQIT-FQD 89 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + ++ + V + T ++ +Y + T + S +G R Sbjct: 90 EQCTPEDWANDGDAVFFTTAIEQMGSAIYRVKTSGGTPAPIYLEPYEQLGQVAVSPDGTR 149 Query: 272 ALISVQKDEAM------------DIYSVDLQSNATERLTNTLFIN-------ISASYSPD 312 ++ + D A ++ ++PD Sbjct: 150 LAFVNIRERWWRRGPHPFSSNEIWLGPTDPDYRALCQIAGPFGQRLVYAGKLGWPLWAPD 209 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + D +G E L+ + + ++I+ ++ P + + ++I + G+ + Sbjct: 210 GQGLYIVCDSDGNENLWYLPLGEGEARQITHFRDGRLLFPAIARRNNVIVCERGDGQLWR 269 Query: 373 IG-------------VMKKDGSQERLLVEDSNLQAPTWSPSGRSLI-------FSRKKDG 412 I + + R+ S SP G+ L F+ D Sbjct: 270 IDPISGESVPVPIRVRIDSKRTPVRVERWTSGFSEVRLSPDGKKLAIVARGDVFADFADK 329 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +T L G + NTPA W Sbjct: 330 ETDRDL----RQGPAFRVTNTPAREWSIAWAP 357 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 90/255 (35%), Gaps = 34/255 (13%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + ++ +G LT + PRFSP+ Q++ ++ D +Y++D P+ Sbjct: 27 DVWLVSIEGGVAERLTA-HPASHYGPRFSPDGQRILFSAGRDGSG-DLYVLDL-AGGPPR 83 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISA-SY 309 +I ++++G + ++ IY V + + + + Sbjct: 84 QITFQDEQCTPEDWANDGDAVFFTTAIEQMGSAIYRVKTSGGTPAPIYLEPYEQLGQVAV 143 Query: 310 SPDSSQIVFESDRE----------GKEQLYVMQSN----------GSDQKRISQDKEASY 349 SPD +++ F + RE ++++ ++ G +R+ + Sbjct: 144 SPDGTRLAFVNIRERWWRRGPHPFSSNEIWLGPTDPDYRALCQIAGPFGQRLVYAGK--L 201 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFS 407 P+W+P G + S + + + R + D L P + ++ Sbjct: 202 GWPLWAPDGQGLYIVCDSDGNENLWYLPLGEGEARQITHFRDGRLLFPAIARRNNVIVCE 261 Query: 408 RKKDGDTGSKLYSID 422 R +L+ ID Sbjct: 262 RGDG-----QLWRID 271 Score = 66.6 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 31/227 (13%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR--IGNFRSMI 260 R + +R + + +SP+ + +A+ DD VY++ + + N Sbjct: 425 PREVCQARFAVAADLCWSPDSRYLAFIAQDDRLFSNVYIVPAAGGEPRQITFLSNLDGGN 484 Query: 261 LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT-------ERLTNTLFI-NISASYSP 311 L +S +G + + ++ I VDL+ + ERL Sbjct: 485 LC--WSPDGSFIIFTTEQYRLEAQIARVDLRPSQPVFRETAFERLFEKKEEKPTEP---- 538 Query: 312 DSSQIV---FESDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFS 367 Q S + +Y G +++ R+ + + SP G + F Sbjct: 539 -GDQSAKEPRVSQPLTEPIIY----EGIERRLRLLTPPQMNAMAGPISPDGKDLLFLASV 593 Query: 368 GEKFAIGVMKKD----GSQERLLV-EDSNLQAPTWSPSGRSLIFSRK 409 K + M D R L D+ ++P GRS + Sbjct: 594 AGKVDVWTMPLDEPRANQPPRQLTASDTRKGFLQFAPDGRSFYYLED 640 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 66/219 (30%), Gaps = 54/219 (24%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +++ + +++ ++ G R +T + +SP+ + + T + Sbjct: 447 YLAFIAQDDRLFSNVYIVPAAGGEPRQITFLSNLDGGNLCWSPDGSFIIFTTEQYRLEAQ 506 Query: 239 VYLMDTR-----------------------------------------------IDRAPK 251 + +D R I+R + Sbjct: 507 IARVDLRPSQPVFRETAFERLFEKKEEKPTEPGDQSAKEPRVSQPLTEPIIYEGIERRLR 566 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ----SNATERLTNTLFINISA 307 + + +A S +GK L +D++++ L + +LT + Sbjct: 567 LLTPPQMNAMAGPISPDGKDLLFLASVAGKVDVWTMPLDEPRANQPPRQLTASDTRKGFL 626 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 ++PD + D + + G++ R+S E Sbjct: 627 QFAPDGRSFYYLED---GQVVVRRFPGGNEPNRLSLRAE 662 >gi|326446361|ref|ZP_08221095.1| hypothetical protein SclaA2_35082 [Streptomyces clavuligerus ATCC 27064] Length = 1100 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 32/247 (12%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + +++ ++ + R + P S +G+ ++ + Sbjct: 77 DGRRLV------AEVQNILWSLDRDGSPAVPLTPPDLEPTRPVISPDGREVAMAAYRGGF 130 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQSNG 335 I+ + + RLT F + S+SPD ++I F S+R G +++ + Sbjct: 131 FSIWVMRTDGSRLRRLTGGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRD 190 Query: 336 SDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFSGE-----KFAIGVMKKDGS 381 R++ QD FDPVWS G + F + I + DG Sbjct: 191 GGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGG 250 Query: 382 QERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++ E + NL P SP+GR+ + R G + ++ ++G L A A Sbjct: 251 GGPVVTEHTATEGNLLTPAVSPAGRT-AWLRSVPGPARPETITLFVDGEPVALDGDLAPA 309 Query: 438 SDPQWVG 444 P+W+G Sbjct: 310 P-PRWIG 315 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 26/239 (10%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +N L +DRDG+ LTP D P SP+ ++VA A Y +++M T R Sbjct: 86 QNILWSLDRDGSPAVPLTP-PDLEPTRPVISPDGREVAMAAYR-GGFFSIWVMRTDGSRL 143 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLT----- 298 +R+ P +S +G R S ++ I++V+++ RLT Sbjct: 144 -RRLTGGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRDGGLTRLTGLPGQ 202 Query: 299 -----NTLFINISASYSPDSSQIVFESDREGKEQLY-----VMQSNGSDQKRIS--QDKE 346 + + + +S D S+++F R L + ++G ++ E Sbjct: 203 QGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATE 262 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P SP G G + + L D P W + LI Sbjct: 263 GNLLTPAVSPAGRTAWLRSVPGPARPETITLFVDGEPVALDGDLAPAPPRWIGDEQLLI 321 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 39/253 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKR 271 + P+ SP+ + VA+A L AP+RI + + I P ++ +G+ Sbjct: 372 VHLPQLSPDGRTVAFA------ALNSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRA 425 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + +D + DL L + SPD +++ D G + + Sbjct: 426 LIYTDDRDGLNAVRRRDLADGTETVLAAGGRVQGVP--SPDGTRLA-CLDMAGNLVVRDL 482 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKDGSQER 384 + + P WSP G IA +F I ++ R Sbjct: 483 AAGTERTLVAALGAGGLPGRPSWSPDGRWIALCDRNRLNHRFREGHNLIRIVDAATGASR 542 Query: 385 L-------LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL------NGRNETLI 431 L + D P WSP GR L + S L+ + + +G L Sbjct: 543 LHGMGPYVSLSDRYASGPVWSPDGRWLACVSE------SALWLLPVGPDGVPSGEARRLN 596 Query: 432 NTPAYASDPQWVG 444 + PA P W G Sbjct: 597 DEPAD--HPSWSG 607 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 100/302 (33%), Gaps = 41/302 (13%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPN 222 + +G ++ V+ NSL + G R + S + P ++P+ Sbjct: 364 ERPRPVRGVHLPQLS-PDGRTVAFAALNSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPD 422 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + Y DD D L D + + P S +G R D A Sbjct: 423 GRALIYT--DDRDGLNAVRRRDLADGTETVLAAGGRVQGVP--SPDGTRLAC---LDMAG 475 Query: 283 DIYSVDLQSNATERLTNTLF---INISASYSPDSSQIVFE-------SDREGKEQLYVMQ 332 ++ DL + L L + S+SPD I REG + ++ Sbjct: 476 NLVVRDLAAGTERTLVAALGAGGLPGRPSWSPDGRWIALCDRNRLNHRFREGHNLIRIVD 535 Query: 333 SNGSDQK-----RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV--MKKDG---SQ 382 + + + PVWSP G +A S A+ + + DG + Sbjct: 536 AATGASRLHGMGPYVSLSDRYASGPVWSPDGRWLACVSES----ALWLLPVGPDGVPSGE 591 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE---TLINTPAYASD 439 R L ++ P+WS + R+L++ +L ID +GR + Sbjct: 592 ARRLNDEPAD-HPSWSGNSRTLLYQSN----GRLRLLGIDASGRPAGAPRTVPVSLDVRR 646 Query: 440 PQ 441 P Sbjct: 647 PA 648 Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 112/361 (31%), Gaps = 59/361 (16%) Query: 130 LWDVKDRKQIIGKKFFSSPASW-RKIAHTISD----DIYQSITGEKGDFNSRILFVSESV 184 +W + + + F++PA R IA +D + T +G+ + + + Sbjct: 217 VWSADGSRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRT 276 Query: 185 -----VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-----YATYDDE 234 V G + + DG + D PR+ ++Q + + Sbjct: 277 AWLRSVPGPARPETITLFVDGEP---VALDGDLAPAPPRWIGDEQLLITLGGQFQIIRPH 333 Query: 235 DILRVYLMDTRIDRAPKRIG-------------NFRSMILAPRFSSNGKRALISVQKDEA 281 L+ +R + P+ S +G+ + Sbjct: 334 RERTGTLVPLDATLRVRRPAYTVKTYALEAERPRPVRGVHLPQLSPDGRTVAFAA----L 389 Query: 282 MDIYSVDLQSNATERLTNTL--FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 +++V A R+ + ++PD +++ DR+G + + Sbjct: 390 NSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTDDRDGLNAVRRRDLADGTET 449 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV----EDSNLQAP 395 ++ V SP G +A +G + V ER LV P Sbjct: 450 VLAAGGR---VQGVPSPDGTRLACLDMAG---NLVVRDLAAGTERTLVAALGAGGLPGRP 503 Query: 396 TWSPSGRSLIFS-------RKKDGDTGSKLYSI-----DLNGRNETLINTPAYASDPQWV 443 +WSP GR + R ++G ++ L+G + + YAS P W Sbjct: 504 SWSPDGRWIALCDRNRLNHRFREGHNLIRIVDAATGASRLHGMGPYVSLSDRYASGPVWS 563 Query: 444 G 444 Sbjct: 564 P 564 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 100/303 (33%), Gaps = 63/303 (20%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRI 246 S+ VM DG+ +R LT P +SP+ ++A+++ D R++ ++ R Sbjct: 132 SIWVMRTDGSRLRRLT-GGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRD 190 Query: 247 DRAPKRIG---------NFRSMILAPRFSSNGKRALISVQKDEAM-----DIYSVDLQSN 292 + G + P +S++G R L + A I SV Sbjct: 191 GGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGG 250 Query: 293 ATERLTNTLFINIS---ASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEAS 348 +T + + SP S + + + +G ++ D + + Sbjct: 251 GGPVVTEHTATEGNLLTPAVSPAGRTAWLRSVPGPARPETITLFVDGEP---VALDGDLA 307 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNLQAPTW---------- 397 P W L+ G +F I ++ L ++ P + Sbjct: 308 PAPPRWIGDEQLLI---TLGGQFQIIRPHRERTGTLVPLDATLRVRRPAYTVKTYALEAE 364 Query: 398 -------------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTP-AYASDPQ 441 SP GR++ F+ + L+++ +G I ++P AY P Sbjct: 365 RPRPVRGVHLPQLSPDGRTVAFAA------LNSLWTVRASGGAPRRIVRSSPTAYIQGPV 418 Query: 442 WVG 444 W Sbjct: 419 WTP 421 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 100/309 (32%), Gaps = 51/309 (16%) Query: 175 SRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVAYATY 231 SR+LFV ++ ++ + DG +T + L P SP + Sbjct: 223 SRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRTAW--LR 280 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-----------QKDE 280 R + +D P + + PR+ + ++ LI++ ++ Sbjct: 281 SVPGPARPETITLFVDGEPVAL-DGDLAPAPPRWIGD-EQLLITLGGQFQIIRPHRERTG 338 Query: 281 AMDIYSVDLQSNATERLTNTLFINIS----------ASYSPDSSQIVFESDREGKEQLYV 330 + L+ T + SPD + F + L+ Sbjct: 339 TLVPLDATLRVRRPAYTVKTYALEAERPRPVRGVHLPQLSPDGRTVAFAA----LNSLWT 394 Query: 331 MQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++++G +RI + +Y PVW+P G + +T A+ E +L Sbjct: 395 VRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTDDRDGLNAVRRRDLADGTETVLAAG 454 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET----------LINTPAYAS 438 +Q P SP G L D L DL E L P+++ Sbjct: 455 GRVQGVP--SPDGTRLACL-----DMAGNLVVRDLAAGTERTLVAALGAGGLPGRPSWSP 507 Query: 439 DPQWVGFMD 447 D +W+ D Sbjct: 508 DGRWIALCD 516 >gi|16124371|ref|NP_418935.1| hypothetical protein CC_0116 [Caulobacter crescentus CB15] gi|13421223|gb|AAK22103.1| hypothetical protein CC_0116 [Caulobacter crescentus CB15] Length = 1096 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 15/169 (8%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 RI + S +GK + D IY++ + R+ L + +SP Sbjct: 47 RISVDNGTWMNVDVSRDGKLIAFDILGD----IYTMPITGGTPTRIAEGLAYDQQPRFSP 102 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKF 366 D +I F SDR G + ++VM +G D++++++++ P WSP G I T Sbjct: 103 DGKRIAFTSDRGGGDNIWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGR 162 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRSLIFSRK 409 S + V G LV+ ++ Q P ++ G+S+ ++R Sbjct: 163 SLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRN 211 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 32/236 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + +A+ D +Y M P RI + PRFS +GKR + + Sbjct: 61 SRDGKLIAFDILGD-----IYTMPI-TGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRG 114 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ ++L ++T F ++ S+SPD IV F + R G +++V Sbjct: 115 GGDNIWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHV 174 Query: 334 NGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVM 376 +G KR S+ + +P+++ G + +T+ + F I Sbjct: 175 SGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRNVTPGPIFEYAQDSNTALFDIERY 234 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + V PT SP G+ + F R++ T SKLY DL E I Sbjct: 235 DLETGEVTTAVSGLGGSVRPTPSPDGKKIAFVRRE--RTKSKLYVKDLTSGEERKI 288 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 70/325 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 RI F S+ + VM+ DG + R +T ++L +P +SP+ + + + T Sbjct: 106 RIAFTSDRGGGDN----IWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTG 161 Query: 232 DDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNGKRALISVQKDEAM----- 282 V++ + + + + P ++++GK + Sbjct: 162 RSLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRNVTPGPIFEYA 221 Query: 283 --------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 DI DL++ + L ++ + SPD +I F K +LYV Sbjct: 222 QDSNTALFDIERYDLETGEVTTAVSGLGGSVRPTPSPDGKKIAFVRRERTKSKLYVKDLT 281 Query: 335 GSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 ++++I + Y + W+P G + ++G K V DG+ Sbjct: 282 SGEERKIYDALDQDVQETWAVTGVYPNMAWTPDGAAVVV--WAGGKIR-RVNVADGASSV 338 Query: 385 LLV--------------------EDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSI 421 + + + P W SP G+S++F +T KL+ Sbjct: 339 IPFKIDDTRVVIDAIHPEVAVAPDRFTTKMPRWASVSPDGKSVVF------ETLGKLWIK 392 Query: 422 DLNGRNETLINTPAYASD---PQWV 443 G + + + P W Sbjct: 393 STAGGEARRLVSGDEDAFELYPSWS 417 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 28/243 (11%) Query: 216 EPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKR 271 PR+ SP+ + V + T ++++ T A + + G+ + L P +S +G+ Sbjct: 368 MPRWASVSPDGKSVVFETLG-----KLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRT 422 Query: 272 ALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK----- 325 + D + +V + + + +SPD IVFE R G Sbjct: 423 IVFVSWTDAGLGRLRTVPAAGGVGKDVIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSGR 482 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 +Y + + G R+S+ +P + D + SG+K + +G Sbjct: 483 WSQDPGIYRVAAAGGTPVRVSRGG----SEPQFGAANDRVFMLMSSGDKRQLVSTDLNGQ 538 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD-----TGSKLYSIDLNGRNETLINTPAY 436 R+ + SP GR++ F + + G++ ++D G + A Sbjct: 539 ARRVHASGDMVNDFQVSPDGRNVAFRQNYEAFVMPLMPGTQEVAVDQKGGALPVTRVSAE 598 Query: 437 ASD 439 ++ Sbjct: 599 GAE 601 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 89/271 (32%), Gaps = 29/271 (10%) Query: 160 DDIYQSITGEKGDFNSRI---LFVSESVVSGIIKN--SLCV-MDRDGANIRYLTPSRDQI 213 D I+ + F +++ VS S + + L + G R ++ D Sbjct: 351 DAIHPEVAVAPDRFTTKMPRWASVSPDGKSVVFETLGKLWIKSTAGGEARRLVSGDEDAF 410 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P +S + + + + ++ D + R+ + K + APRFS +GK + Sbjct: 411 ELYPSWSRDGRTIVFVSWTDAGLGRLRTVP-AAGGVGKDVIAQPGHYGAPRFSPDGKTIV 469 Query: 274 ISVQKDEA---------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++ IY V R++ + + ++ Sbjct: 470 FERRRGGGLTSGRWSQDPGIYRVAAAGGTPVRVSRGGS---EPQFGAANDRVFMLMSSGD 526 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVM 376 K QL NG +R+ + D SP G +AF + + V Sbjct: 527 KRQLVSTDLNG-QARRVHASGDM-VNDFQVSPDGRNVAFRQNYEAFVMPLMPGTQEVAVD 584 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +K G+ V + WS G+ + +S Sbjct: 585 QKGGALPVTRVSAEGAEFIHWSRDGKQVHWS 615 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 84/276 (30%), Gaps = 38/276 (13%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 I+ + G + + + +++ I + M G + +PRFSP+ + Sbjct: 47 RISVDNGTWMNVDVSRDGKLIAFDILGDIYTMPITGGTPTRIAEGL-AYDQQPRFSPDGK 105 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD- 279 ++A+ + D +++M+ + ++ P +S +G+ + + + Sbjct: 106 RIAFTS-DRGGGDNIWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSL 164 Query: 280 EAMDIYSVDLQSNATERLTNTLFIN-----ISASYSPDSSQIVFESDREGKE-------- 326 +++ + +L Y+ D + + + Sbjct: 165 GTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRNVTPGPIFEYAQDS 224 Query: 327 -----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + + S P SP G IAF + K + V Sbjct: 225 NTALFDIERYDLETGEVTTAVSGLGGSVR-PTPSPDGKKIAFVRRERTKSKLYVKDLTSG 283 Query: 382 QERLLVE------------DSNLQAPTWSPSGRSLI 405 +ER + + W+P G +++ Sbjct: 284 EERKIYDALDQDVQETWAVTGVYPNMAWTPDGAAVV 319 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 102/269 (37%), Gaps = 48/269 (17%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK----------RIGNFRSMILAPRF 265 P SP+ +K+A+ + ++Y+ D K + + Sbjct: 253 RPTPSPDGKKIAFVRRERTKS-KLYVKDLTSGEERKIYDALDQDVQETWAVTGVYPNMAW 311 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSN-------ATERLTNTLFINIS----------AS 308 + +G A++ + + D S+ T + + + ++ Sbjct: 312 TPDGA-AVVVWAGGKIRRVNVADGASSVIPFKIDDTRVVIDAIHPEVAVAPDRFTTKMPR 370 Query: 309 Y---SPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFT 364 + SPD +VFE+ +L++ + G + +R+ S D++A P WS G I F Sbjct: 371 WASVSPDGKSVVFET----LGKLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRTIVFV 426 Query: 365 KFSG-EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS------ 416 ++ + + G + ++ + + AP +SP G++++F R++ G S Sbjct: 427 SWTDAGLGRLRTVPAAGGVGKDVIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSGRWSQD 486 Query: 417 -KLYSIDLNGRNETLINTPAYASDPQWVG 444 +Y + G ++ S+PQ+ Sbjct: 487 PGIYRVAAAGGTPVRVSRGG--SEPQFGA 513 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 105/337 (31%), Gaps = 65/337 (19%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFE---- 216 ++ + + R + + +G + V G L + L + Sbjct: 137 FRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGE 196 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMD------------TRIDRAPKRIGNFRSMILAPR 264 P ++ + + V Y + Y D + + P Sbjct: 197 PIYAADGKSVFYTRNVTPGPIFEYAQDSNTALFDIERYDLETGEVTTAVSGLGGSVR-PT 255 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDS 313 S +GK+ ++ +Y DL S ++ + L ++ + +++PD Sbjct: 256 PSPDGKKIAFVRRERTKSKLYVKDLTSGEERKIYDALDQDVQETWAVTGVYPNMAWTPDG 315 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-------------------PVW 354 + +V + ++ + I + + P W Sbjct: 316 AAVVVWA----GGKIRRVNVADGASSVIPFKIDDTRVVIDAIHPEVAVAPDRFTTKMPRW 371 Query: 355 ---SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSR 408 SP G + F + + G + R LV ED+ P+WS GR+++F Sbjct: 372 ASVSPDGKSVVFETLG----KLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRTIVFVS 427 Query: 409 KKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 D G +L ++ G + +I P + P++ Sbjct: 428 WTDAGLG-RLRTVPAAGGVGKDVIAQPGHYGAPRFSP 463 >gi|221233054|ref|YP_002515490.1| TolB protein [Caulobacter crescentus NA1000] gi|220962226|gb|ACL93582.1| TolB protein [Caulobacter crescentus NA1000] Length = 1115 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 15/169 (8%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 RI + S +GK + D IY++ + R+ L + +SP Sbjct: 66 RISVDNGTWMNVDVSRDGKLIAFDILGD----IYTMPITGGTPTRIAEGLAYDQQPRFSP 121 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKF 366 D +I F SDR G + ++VM +G D++++++++ P WSP G I T Sbjct: 122 DGKRIAFTSDRGGGDNIWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGR 181 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRSLIFSRK 409 S + V G LV+ ++ Q P ++ G+S+ ++R Sbjct: 182 SLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRN 230 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 32/236 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + +A+ D +Y M P RI + PRFS +GKR + + Sbjct: 80 SRDGKLIAFDILGD-----IYTMPI-TGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRG 133 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ ++L ++T F ++ S+SPD IV F + R G +++V Sbjct: 134 GGDNIWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHV 193 Query: 334 NGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVM 376 +G KR S+ + +P+++ G + +T+ + F I Sbjct: 194 SGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRNVTPGPIFEYAQDSNTALFDIERY 253 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + V PT SP G+ + F R++ T SKLY DL E I Sbjct: 254 DLETGEVTTAVSGLGGSVRPTPSPDGKKIAFVRRE--RTKSKLYVKDLTSGEERKI 307 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 70/325 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 RI F S+ + VM+ DG + R +T ++L +P +SP+ + + + T Sbjct: 125 RIAFTSDRGGGDN----IWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTG 180 Query: 232 DDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNGKRALISVQKDEAM----- 282 V++ + + + + P ++++GK + Sbjct: 181 RSLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRNVTPGPIFEYA 240 Query: 283 --------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 DI DL++ + L ++ + SPD +I F K +LYV Sbjct: 241 QDSNTALFDIERYDLETGEVTTAVSGLGGSVRPTPSPDGKKIAFVRRERTKSKLYVKDLT 300 Query: 335 GSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 ++++I + Y + W+P G + ++G K V DG+ Sbjct: 301 SGEERKIYDALDQDVQETWAVTGVYPNMAWTPDGAAVVV--WAGGKIR-RVNVADGASSV 357 Query: 385 LLV--------------------EDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSI 421 + + + P W SP G+S++F +T KL+ Sbjct: 358 IPFKIDDTRVVIDAIHPEVAVAPDRFTTKMPRWASVSPDGKSVVF------ETLGKLWIK 411 Query: 422 DLNGRNETLINTPAYASD---PQWV 443 G + + + P W Sbjct: 412 STAGGEARRLVSGDEDAFELYPSWS 436 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 28/243 (11%) Query: 216 EPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKR 271 PR+ SP+ + V + T ++++ T A + + G+ + L P +S +G+ Sbjct: 387 MPRWASVSPDGKSVVFETLG-----KLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRT 441 Query: 272 ALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK----- 325 + D + +V + + + +SPD IVFE R G Sbjct: 442 IVFVSWTDAGLGRLRTVPAAGGVGKDVIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSGR 501 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 +Y + + G R+S+ +P + D + SG+K + +G Sbjct: 502 WSQDPGIYRVAAAGGTPVRVSRGG----SEPQFGAANDRVFMLMSSGDKRQLVSTDLNGQ 557 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD-----TGSKLYSIDLNGRNETLINTPAY 436 R+ + SP GR++ F + + G++ ++D G + A Sbjct: 558 ARRVHASGDMVNDFQVSPDGRNVAFRQNYEAFVMPLMPGTQEVAVDQKGGALPVTRVSAE 617 Query: 437 ASD 439 ++ Sbjct: 618 GAE 620 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 89/271 (32%), Gaps = 29/271 (10%) Query: 160 DDIYQSITGEKGDFNSRI---LFVSESVVSGIIKN--SLCV-MDRDGANIRYLTPSRDQI 213 D I+ + F +++ VS S + + L + G R ++ D Sbjct: 370 DAIHPEVAVAPDRFTTKMPRWASVSPDGKSVVFETLGKLWIKSTAGGEARRLVSGDEDAF 429 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P +S + + + + ++ D + R+ + K + APRFS +GK + Sbjct: 430 ELYPSWSRDGRTIVFVSWTDAGLGRLRTVP-AAGGVGKDVIAQPGHYGAPRFSPDGKTIV 488 Query: 274 ISVQKDEA---------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 ++ IY V R++ + + ++ Sbjct: 489 FERRRGGGLTSGRWSQDPGIYRVAAAGGTPVRVSRGGS---EPQFGAANDRVFMLMSSGD 545 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAIGVM 376 K QL NG +R+ + D SP G +AF + + V Sbjct: 546 KRQLVSTDLNG-QARRVHASGDM-VNDFQVSPDGRNVAFRQNYEAFVMPLMPGTQEVAVD 603 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +K G+ V + WS G+ + +S Sbjct: 604 QKGGALPVTRVSAEGAEFIHWSRDGKQVHWS 634 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 84/276 (30%), Gaps = 38/276 (13%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 I+ + G + + + +++ I + M G + +PRFSP+ + Sbjct: 66 RISVDNGTWMNVDVSRDGKLIAFDILGDIYTMPITGGTPTRIAEGL-AYDQQPRFSPDGK 124 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD- 279 ++A+ + D +++M+ + ++ P +S +G+ + + + Sbjct: 125 RIAFTS-DRGGGDNIWVMNLDGGDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSL 183 Query: 280 EAMDIYSVDLQSNATERLTNTLFIN-----ISASYSPDSSQIVFESDREGKE-------- 326 +++ + +L Y+ D + + + Sbjct: 184 GTGEVWVYHVSGGGGVQLVKRASEQLQKELGEPIYAADGKSVFYTRNVTPGPIFEYAQDS 243 Query: 327 -----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + + S P SP G IAF + K + V Sbjct: 244 NTALFDIERYDLETGEVTTAVSGLGGSVR-PTPSPDGKKIAFVRRERTKSKLYVKDLTSG 302 Query: 382 QERLLVE------------DSNLQAPTWSPSGRSLI 405 +ER + + W+P G +++ Sbjct: 303 EERKIYDALDQDVQETWAVTGVYPNMAWTPDGAAVV 338 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 104/269 (38%), Gaps = 48/269 (17%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRI----------DRAPKRIGNFRSMILAPRF 265 P SP+ +K+A+ + ++Y+ D D+ + + + Sbjct: 272 RPTPSPDGKKIAFVRRERTKS-KLYVKDLTSGEERKIYDALDQDVQETWAVTGVYPNMAW 330 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSN-------ATERLTNTLFINIS----------AS 308 + +G A++ + + D S+ T + + + ++ Sbjct: 331 TPDGA-AVVVWAGGKIRRVNVADGASSVIPFKIDDTRVVIDAIHPEVAVAPDRFTTKMPR 389 Query: 309 Y---SPDSSQIVFESDREGKEQLYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFT 364 + SPD +VFE+ +L++ + G + +R+ S D++A P WS G I F Sbjct: 390 WASVSPDGKSVVFET----LGKLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRTIVFV 445 Query: 365 KFSG-EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS------ 416 ++ + + G + ++ + + AP +SP G++++F R++ G S Sbjct: 446 SWTDAGLGRLRTVPAAGGVGKDVIAQPGHYGAPRFSPDGKTIVFERRRGGGLTSGRWSQD 505 Query: 417 -KLYSIDLNGRNETLINTPAYASDPQWVG 444 +Y + G ++ S+PQ+ Sbjct: 506 PGIYRVAAAGGTPVRVSRGG--SEPQFGA 532 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 105/337 (31%), Gaps = 65/337 (19%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFE---- 216 ++ + + R + + +G + V G L + L + Sbjct: 156 FRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEQLQKELGE 215 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMD------------TRIDRAPKRIGNFRSMILAPR 264 P ++ + + V Y + Y D + + P Sbjct: 216 PIYAADGKSVFYTRNVTPGPIFEYAQDSNTALFDIERYDLETGEVTTAVSGLGGSVR-PT 274 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDS 313 S +GK+ ++ +Y DL S ++ + L ++ + +++PD Sbjct: 275 PSPDGKKIAFVRRERTKSKLYVKDLTSGEERKIYDALDQDVQETWAVTGVYPNMAWTPDG 334 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-------------------PVW 354 + +V + ++ + I + + P W Sbjct: 335 AAVVVWA----GGKIRRVNVADGASSVIPFKIDDTRVVIDAIHPEVAVAPDRFTTKMPRW 390 Query: 355 ---SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSR 408 SP G + F + + G + R LV ED+ P+WS GR+++F Sbjct: 391 ASVSPDGKSVVFETLG----KLWIKSTAGGEARRLVSGDEDAFELYPSWSRDGRTIVFVS 446 Query: 409 KKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 D G +L ++ G + +I P + P++ Sbjct: 447 WTDAGLG-RLRTVPAAGGVGKDVIAQPGHYGAPRFSP 482 >gi|332995298|gb|AEF05353.1| amidohydrolase [Alteromonas sp. SN2] Length = 1111 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 43/257 (16%) Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS-----SNGKRALISVQKDEA 281 +A D + + + P + +S NGK + D Sbjct: 25 THAADDIKKDATINEEKWDVSNPPFALNEVTINTTETTWSSLDIAPNGKYMVF----DML 80 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DIY V++ +T NI S SPD S+I F SDR+G L++M SNG + +++ Sbjct: 81 GDIYKVNIDGGDATPITQDFAWNIHPSISPDGSKIAFISDRDGINNLWIMDSNGENLRQV 140 Query: 342 SQDKEASYFDPVWSPQGDLI-----AFTKFSGEKFAIGVMKKDGSQERLL-------VED 389 +++K P WSP G+ + + S I + G + + Sbjct: 141 TKEKNNLIHSPKWSPDGEYLLVSKGIMSSRSIPAGEIWMYHNTGGDGLQIKARNHGKKDQ 200 Query: 390 SNLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSID------------LNGRNET 429 N+ P +S G+ + F+ + D +++I ++G Sbjct: 201 QNIADPVFSHDGKHIYFTENTVPGSRFDYNRDPLGGIFAITRFDRENGDESRYISGTGGA 260 Query: 430 LINTPAYASDPQWVGFM 446 ++ TP + D ++V F+ Sbjct: 261 VVPTP--SPDGKYVAFV 275 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 124/379 (32%), Gaps = 101/379 (26%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 + +I+ SI+ + S+I F+S+ N+L +MD +G N+R +T ++ ++ P Sbjct: 100 FAWNIHPSISPDG----SKIAFISDRDG----INNLWIMDSNGENLRQVTKEKNNLIHSP 151 Query: 218 RFSPNQQKVA----YATYDDEDILRVYLMDTRIDRAPKRIGNFRS-----MILAPRFSSN 268 ++SP+ + + + +++ + I P FS + Sbjct: 152 KWSPDGEYLLVSKGIMSSRSIPAGEIWMYHNTGGDGLQIKARNHGKKDQQNIADPVFSHD 211 Query: 269 GKRALIS----------VQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQ 315 GK + +D I+++ D ++ R + + + SPD Sbjct: 212 GKHIYFTENTVPGSRFDYNRDPLGGIFAITRFDRENGDESRYISGTGGAVVPTPSPDGKY 271 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRIS----------QDKEASYFDPVWSPQGDLIAF-- 363 + F + K L++ ++ ++ E + W P I + Sbjct: 272 VAFVRRVKEKTALFLKDIKTGEETPLTTELERDMQEGFGSEGYFAYFDWMPDSSAIVYWT 331 Query: 364 ----------------------------------TKFSGEKFAIGV-----MKKDG---- 380 + ++F + + M DG Sbjct: 332 GGTFHSINIDDKTISDININVEATLQYADALRFDVDVAPDEFDVNMIRWSQMSPDGKTLL 391 Query: 381 --------------SQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + ++ P +S G++++++ D + GS Sbjct: 392 FQALGKLYVKDVKSGKMKRLTKQNDHGEYYPRFSNDGKAIVYTTWNDDELGSVRIVSARG 451 Query: 425 GRNETLINTPAYASDPQWV 443 G+ + + P + +P + Sbjct: 452 GKGKVITKQPGHYIEPSFS 470 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 94/275 (34%), Gaps = 44/275 (16%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRV-----------------YLMDTRIDRAPK 251 + + P+ + Y T + + Y R D Sbjct: 310 GSEGYFAYFDWMPDSSAIVYWTGGTFHSINIDDKTISDININVEATLQYADALRFDVDVA 369 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYS 310 +MI + S +GK L +Y D++S +RLT +S Sbjct: 370 PDEFDVNMIRWSQMSPDGKTLLFQA----LGKLYVKDVKSGKMKRLTKQNDHGEYYPRFS 425 Query: 311 PDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D IV+ + + + + ++ + G K I++ + Y +P +S + + + KF+G Sbjct: 426 NDGKAIVYTTWNDDELGSVRIVSARGGKGKVITK-QPGHYIEPSFSSDREKVVYRKFTGG 484 Query: 370 ---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD--TGSKL 418 I V D E+ + + P ++ + F+ G ++L Sbjct: 485 YLLDPKYSVDPGIYVADLDRKTEKKVSDGG--INPHFADDNSRVYFTESVGGTPYRETQL 542 Query: 419 YSIDLNGRNETLINTPAY-------ASDPQWVGFM 446 S++L G ++ A + D +WV F+ Sbjct: 543 SSVNLQGNDKRTHLYGADDVSEYKLSHDKKWVAFV 577 >gi|294506198|ref|YP_003570256.1| hypothetical protein SRM_00383 [Salinibacter ruber M8] gi|294342526|emb|CBH23304.1| Conserved hypothetical protein [Salinibacter ruber M8] Length = 1072 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 108/299 (36%), Gaps = 32/299 (10%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D Y + G D + + + D G + + +I P Sbjct: 256 DSAYVELFGVSADSLTNEWAEATRETYEPLMKGRTPPDSAGQTVLAPETNGGRINIAPSL 315 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS---------MILAPRFSSNGK 270 SP+ + VA+ + + +Y+ D + + + + +S +G+ Sbjct: 316 SPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRFISSSGTWSPDGR 375 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----SASYSPDSSQIVFESDREGK 325 R +D I ++ ER + ++ + ++SPD +++ F G Sbjct: 376 RLAFVSSEDGDNQITVWNVVDEEIER---SFSVDGVTSMKNPAWSPDGARLAFAGTDGGI 432 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIGV 375 LYV+ ++++ D+ A P W+P G+ IAF E +G+ Sbjct: 433 SDLYVLNLETESVRQLTNDRYADL-QPTWAPDGETIAFATDRAETNLETLSPSSNMDLGL 491 Query: 376 MKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + R D+ P ++P G+SL F +DG +Y +DL+ + + Sbjct: 492 VDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDG--FKDVYRMDLSSGDRFRVT 548 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 29/222 (13%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNAT-----ERLTNT-----LF 302 N + +AP S +G+ +++ + ++Y D ++ T F Sbjct: 304 TNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRF 363 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLI 361 I+ S ++SPD ++ F S +G Q+ V + +R S D S +P WSP G + Sbjct: 364 ISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPAWSPDGARL 423 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKK--------DG 412 AF G + V+ + R L D PTW+P G ++ F+ + Sbjct: 424 AFAGTDGGISDLYVLNLETESVRQLTNDRYADLQPTWAPDGETIAFATDRAETNLETLSP 483 Query: 413 DTGSKLYSIDLNGRNETLI--------NTPAYASDPQWVGFM 446 + L +D++ T+ + P +A D Q + F+ Sbjct: 484 SSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFI 525 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 25/209 (11%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANI------------RYLTPSRDQILFEPR 218 G FN+ S S + V DG N R + + P Sbjct: 356 GHFNALRFISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPA 415 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---- 274 +SP+ ++A+A D I +Y+++ + +++ N R L P ++ +G+ Sbjct: 416 WSPDGARLAFAGTD-GGISDLYVLNLETES-VRQLTNDRYADLQPTWAPDGETIAFATDR 473 Query: 275 ------SVQKDEAMDIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 ++ MD+ VD+ S R ++ + ++PD + F SD++G + Sbjct: 474 AETNLETLSPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDGFKD 533 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +Y M + D+ R+++ K SP Sbjct: 534 VYRMDLSSGDRFRVTRLKTGVSGITALSP 562 >gi|294817300|ref|ZP_06775942.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|294322115|gb|EFG04250.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1047 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 32/247 (12%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + +++ ++ + R + P S +G+ ++ + Sbjct: 77 DGRRLV------AEVQNILWSLDRDGSPAVPLTPPDLEPTRPVISPDGREVAMAAYRGGF 130 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQSNG 335 I+ + + RLT F + S+SPD ++I F S+R G +++ + Sbjct: 131 FSIWVMRTDGSRLRRLTGGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRD 190 Query: 336 SDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFSGE-----KFAIGVMKKDGS 381 R++ QD FDPVWS G + F + I + DG Sbjct: 191 GGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGG 250 Query: 382 QERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++ E + NL P SP+GR+ + R G + ++ ++G L A A Sbjct: 251 GGPVVTEHTATEGNLLTPAVSPAGRT-AWLRSVPGPARPETITLFVDGEPVALDGDLAPA 309 Query: 438 SDPQWVG 444 P+W+G Sbjct: 310 P-PRWIG 315 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 26/239 (10%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +N L +DRDG+ LTP D P SP+ ++VA A Y +++M T R Sbjct: 86 QNILWSLDRDGSPAVPLTP-PDLEPTRPVISPDGREVAMAAYR-GGFFSIWVMRTDGSRL 143 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLT----- 298 +R+ P +S +G R S ++ I++V+++ RLT Sbjct: 144 -RRLTGGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRDGGLTRLTGLPGQ 202 Query: 299 -----NTLFINISASYSPDSSQIVFESDREGKEQLY-----VMQSNGSDQKRIS--QDKE 346 + + + +S D S+++F R L + ++G ++ E Sbjct: 203 QGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATE 262 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P SP G G + + L D P W + LI Sbjct: 263 GNLLTPAVSPAGRTAWLRSVPGPARPETITLFVDGEPVALDGDLAPAPPRWIGDEQLLI 321 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 39/253 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKR 271 + P+ SP+ + VA+A L AP+RI + + I P ++ +G+ Sbjct: 372 VHLPQLSPDGRTVAFA------ALNSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRA 425 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + +D + DL L + SPD +++ D G + + Sbjct: 426 LIYTDDRDGLNAVRRRDLADGTETVLAAGGRVQGVP--SPDGTRLA-CLDMAGNLVVRDL 482 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKDGSQER 384 + + P WSP G IA +F I ++ R Sbjct: 483 AAGTERTLVAALGAGGLPGRPSWSPDGRWIALCDRNRLNHRFREGHNLIRIVDAATGASR 542 Query: 385 L-------LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL------NGRNETLI 431 L + D P WSP GR L + S L+ + + +G L Sbjct: 543 LHGMGPYVSLSDRYASGPVWSPDGRWLACVSE------SALWLLPVGPDGVPSGEARRLN 596 Query: 432 NTPAYASDPQWVG 444 + PA P W G Sbjct: 597 DEPAD--HPSWSG 607 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 100/302 (33%), Gaps = 41/302 (13%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPN 222 + +G ++ V+ NSL + G R + S + P ++P+ Sbjct: 364 ERPRPVRGVHLPQLS-PDGRTVAFAALNSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPD 422 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + Y DD D L D + + P S +G R D A Sbjct: 423 GRALIYT--DDRDGLNAVRRRDLADGTETVLAAGGRVQGVP--SPDGTRLAC---LDMAG 475 Query: 283 DIYSVDLQSNATERLTNTLF---INISASYSPDSSQIVFE-------SDREGKEQLYVMQ 332 ++ DL + L L + S+SPD I REG + ++ Sbjct: 476 NLVVRDLAAGTERTLVAALGAGGLPGRPSWSPDGRWIALCDRNRLNHRFREGHNLIRIVD 535 Query: 333 SNGSDQK-----RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV--MKKDG---SQ 382 + + + PVWSP G +A S A+ + + DG + Sbjct: 536 AATGASRLHGMGPYVSLSDRYASGPVWSPDGRWLACVSES----ALWLLPVGPDGVPSGE 591 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE---TLINTPAYASD 439 R L ++ P+WS + R+L++ +L ID +GR + Sbjct: 592 ARRLNDEPAD-HPSWSGNSRTLLYQSN----GRLRLLGIDASGRPAGAPRTVPVSLDVRR 646 Query: 440 PQ 441 P Sbjct: 647 PA 648 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 112/361 (31%), Gaps = 59/361 (16%) Query: 130 LWDVKDRKQIIGKKFFSSPASW-RKIAHTISD----DIYQSITGEKGDFNSRILFVSESV 184 +W + + + F++PA R IA +D + T +G+ + + + Sbjct: 217 VWSADGSRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRT 276 Query: 185 -----VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-----YATYDDE 234 V G + + DG + D PR+ ++Q + + Sbjct: 277 AWLRSVPGPARPETITLFVDGEP---VALDGDLAPAPPRWIGDEQLLITLGGQFQIIRPH 333 Query: 235 DILRVYLMDTRIDRAPKRIG-------------NFRSMILAPRFSSNGKRALISVQKDEA 281 L+ +R + P+ S +G+ + Sbjct: 334 RERTGTLVPLDATLRVRRPAYTVKTYALEAERPRPVRGVHLPQLSPDGRTVAFAA----L 389 Query: 282 MDIYSVDLQSNATERLTNTL--FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 +++V A R+ + ++PD +++ DR+G + + Sbjct: 390 NSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTDDRDGLNAVRRRDLADGTET 449 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV----EDSNLQAP 395 ++ V SP G +A +G + V ER LV P Sbjct: 450 VLAAGGR---VQGVPSPDGTRLACLDMAG---NLVVRDLAAGTERTLVAALGAGGLPGRP 503 Query: 396 TWSPSGRSLIFS-------RKKDGDTGSKLYSI-----DLNGRNETLINTPAYASDPQWV 443 +WSP GR + R ++G ++ L+G + + YAS P W Sbjct: 504 SWSPDGRWIALCDRNRLNHRFREGHNLIRIVDAATGASRLHGMGPYVSLSDRYASGPVWS 563 Query: 444 G 444 Sbjct: 564 P 564 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 100/303 (33%), Gaps = 63/303 (20%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRI 246 S+ VM DG+ +R LT P +SP+ ++A+++ D R++ ++ R Sbjct: 132 SIWVMRTDGSRLRRLT-GGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRD 190 Query: 247 DRAPKRIG---------NFRSMILAPRFSSNGKRALISVQKDEAM-----DIYSVDLQSN 292 + G + P +S++G R L + A I SV Sbjct: 191 GGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGG 250 Query: 293 ATERLTNTLFINIS---ASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEAS 348 +T + + SP S + + + +G ++ D + + Sbjct: 251 GGPVVTEHTATEGNLLTPAVSPAGRTAWLRSVPGPARPETITLFVDGEP---VALDGDLA 307 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNLQAPTW---------- 397 P W L+ G +F I ++ L ++ P + Sbjct: 308 PAPPRWIGDEQLLI---TLGGQFQIIRPHRERTGTLVPLDATLRVRRPAYTVKTYALEAE 364 Query: 398 -------------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTP-AYASDPQ 441 SP GR++ F+ + L+++ +G I ++P AY P Sbjct: 365 RPRPVRGVHLPQLSPDGRTVAFAA------LNSLWTVRASGGAPRRIVRSSPTAYIQGPV 418 Query: 442 WVG 444 W Sbjct: 419 WTP 421 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 100/309 (32%), Gaps = 51/309 (16%) Query: 175 SRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVAYATY 231 SR+LFV ++ ++ + DG +T + L P SP + Sbjct: 223 SRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRTAW--LR 280 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-----------QKDE 280 R + +D P + + PR+ + ++ LI++ ++ Sbjct: 281 SVPGPARPETITLFVDGEPVAL-DGDLAPAPPRWIGD-EQLLITLGGQFQIIRPHRERTG 338 Query: 281 AMDIYSVDLQSNATERLTNTLFINIS----------ASYSPDSSQIVFESDREGKEQLYV 330 + L+ T + SPD + F + L+ Sbjct: 339 TLVPLDATLRVRRPAYTVKTYALEAERPRPVRGVHLPQLSPDGRTVAFAA----LNSLWT 394 Query: 331 MQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++++G +RI + +Y PVW+P G + +T A+ E +L Sbjct: 395 VRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTDDRDGLNAVRRRDLADGTETVLAAG 454 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET----------LINTPAYAS 438 +Q P SP G L D L DL E L P+++ Sbjct: 455 GRVQGVP--SPDGTRLACL-----DMAGNLVVRDLAAGTERTLVAALGAGGLPGRPSWSP 507 Query: 439 DPQWVGFMD 447 D +W+ D Sbjct: 508 DGRWIALCD 516 >gi|254388227|ref|ZP_05003463.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|197701950|gb|EDY47762.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1045 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 32/247 (12%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + +++ ++ + R + P S +G+ ++ + Sbjct: 161 DGRRLV------AEVQNILWSLDRDGSPAVPLTPPDLEPTRPVISPDGREVAMAAYRGGF 214 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQSNG 335 I+ + + RLT F + S+SPD ++I F S+R G +++ + Sbjct: 215 FSIWVMRTDGSRLRRLTGGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRD 274 Query: 336 SDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFSGE-----KFAIGVMKKDGS 381 R++ QD FDPVWS G + F + I + DG Sbjct: 275 GGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGG 334 Query: 382 QERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 ++ E + NL P SP+GR+ + R G + ++ ++G L A A Sbjct: 335 GGPVVTEHTATEGNLLTPAVSPAGRT-AWLRSVPGPARPETITLFVDGEPVALDGDLAPA 393 Query: 438 SDPQWVG 444 P+W+G Sbjct: 394 P-PRWIG 399 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 26/239 (10%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +N L +DRDG+ LTP D P SP+ ++VA A Y +++M T R Sbjct: 170 QNILWSLDRDGSPAVPLTP-PDLEPTRPVISPDGREVAMAAYR-GGFFSIWVMRTDGSRL 227 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLT----- 298 +R+ P +S +G R S ++ I++V+++ RLT Sbjct: 228 -RRLTGGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRDGGLTRLTGLPGQ 286 Query: 299 -----NTLFINISASYSPDSSQIVFESDREGKEQLY-----VMQSNGSDQKRIS--QDKE 346 + + + +S D S+++F R L + ++G ++ E Sbjct: 287 QGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATE 346 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + P SP G G + + L D P W + LI Sbjct: 347 GNLLTPAVSPAGRTAWLRSVPGPARPETITLFVDGEPVALDGDLAPAPPRWIGDEQLLI 405 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 39/253 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKR 271 + P+ SP+ + VA+A L AP+RI + + I P ++ +G+ Sbjct: 456 VHLPQLSPDGRTVAFA------ALNSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRA 509 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + +D + DL L + SPD +++ D G + + Sbjct: 510 LIYTDDRDGLNAVRRRDLADGTETVLAAGGRVQGVP--SPDGTRLA-CLDMAGNLVVRDL 566 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKDGSQER 384 + + P WSP G IA +F I ++ R Sbjct: 567 AAGTERTLVAALGAGGLPGRPSWSPDGRWIALCDRNRLNHRFREGHNLIRIVDAATGASR 626 Query: 385 L-------LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL------NGRNETLI 431 L + D P WSP GR L + S L+ + + +G L Sbjct: 627 LHGMGPYVSLSDRYASGPVWSPDGRWLACVSE------SALWLLPVGPDGVPSGEARRLN 680 Query: 432 NTPAYASDPQWVG 444 + PA P W G Sbjct: 681 DEPAD--HPSWSG 691 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 100/302 (33%), Gaps = 41/302 (13%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE-PRFSPN 222 + +G ++ V+ NSL + G R + S + P ++P+ Sbjct: 448 ERPRPVRGVHLPQLS-PDGRTVAFAALNSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPD 506 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + Y DD D L D + + P S +G R D A Sbjct: 507 GRALIYT--DDRDGLNAVRRRDLADGTETVLAAGGRVQGVP--SPDGTRLAC---LDMAG 559 Query: 283 DIYSVDLQSNATERLTNTLF---INISASYSPDSSQIVFE-------SDREGKEQLYVMQ 332 ++ DL + L L + S+SPD I REG + ++ Sbjct: 560 NLVVRDLAAGTERTLVAALGAGGLPGRPSWSPDGRWIALCDRNRLNHRFREGHNLIRIVD 619 Query: 333 SNGSDQK-----RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV--MKKDG---SQ 382 + + + PVWSP G +A S A+ + + DG + Sbjct: 620 AATGASRLHGMGPYVSLSDRYASGPVWSPDGRWLACVSES----ALWLLPVGPDGVPSGE 675 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE---TLINTPAYASD 439 R L ++ P+WS + R+L++ +L ID +GR + Sbjct: 676 ARRLNDEPAD-HPSWSGNSRTLLYQSN----GRLRLLGIDASGRPAGAPRTVPVSLDVRR 730 Query: 440 PQ 441 P Sbjct: 731 PA 732 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 112/361 (31%), Gaps = 59/361 (16%) Query: 130 LWDVKDRKQIIGKKFFSSPASW-RKIAHTISD----DIYQSITGEKGDFNSRILFVSESV 184 +W + + + F++PA R IA +D + T +G+ + + + Sbjct: 301 VWSADGSRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRT 360 Query: 185 -----VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-----YATYDDE 234 V G + + DG + D PR+ ++Q + + Sbjct: 361 AWLRSVPGPARPETITLFVDGEP---VALDGDLAPAPPRWIGDEQLLITLGGQFQIIRPH 417 Query: 235 DILRVYLMDTRIDRAPKRIG-------------NFRSMILAPRFSSNGKRALISVQKDEA 281 L+ +R + P+ S +G+ + Sbjct: 418 RERTGTLVPLDATLRVRRPAYTVKTYALEAERPRPVRGVHLPQLSPDGRTVAFAA----L 473 Query: 282 MDIYSVDLQSNATERLTNTL--FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 +++V A R+ + ++PD +++ DR+G + + Sbjct: 474 NSLWTVRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTDDRDGLNAVRRRDLADGTET 533 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV----EDSNLQAP 395 ++ V SP G +A +G + V ER LV P Sbjct: 534 VLAAGGR---VQGVPSPDGTRLACLDMAG---NLVVRDLAAGTERTLVAALGAGGLPGRP 587 Query: 396 TWSPSGRSLIFS-------RKKDGDTGSKLYSI-----DLNGRNETLINTPAYASDPQWV 443 +WSP GR + R ++G ++ L+G + + YAS P W Sbjct: 588 SWSPDGRWIALCDRNRLNHRFREGHNLIRIVDAATGASRLHGMGPYVSLSDRYASGPVWS 647 Query: 444 G 444 Sbjct: 648 P 648 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 100/303 (33%), Gaps = 63/303 (20%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRI 246 S+ VM DG+ +R LT P +SP+ ++A+++ D R++ ++ R Sbjct: 216 SIWVMRTDGSRLRRLT-GGPFDDRGPSWSPDGTRIAFSSERGGDPVAGSPYRIWTVNVRD 274 Query: 247 DRAPKRIG---------NFRSMILAPRFSSNGKRALISVQKDEAM-----DIYSVDLQSN 292 + G + P +S++G R L + A I SV Sbjct: 275 GGLTRLTGLPGQQGPAQDGPWEDFDPVWSADGSRVLFVRGRFTAPALVSRTIASVPADGG 334 Query: 293 ATERLTNTLFINIS---ASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEAS 348 +T + + SP S + + + +G ++ D + + Sbjct: 335 GGPVVTEHTATEGNLLTPAVSPAGRTAWLRSVPGPARPETITLFVDGEP---VALDGDLA 391 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQERLLVEDSNLQAPTW---------- 397 P W L+ G +F I ++ L ++ P + Sbjct: 392 PAPPRWIGDEQLLI---TLGGQFQIIRPHRERTGTLVPLDATLRVRRPAYTVKTYALEAE 448 Query: 398 -------------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI--NTP-AYASDPQ 441 SP GR++ F+ + L+++ +G I ++P AY P Sbjct: 449 RPRPVRGVHLPQLSPDGRTVAFAA------LNSLWTVRASGGAPRRIVRSSPTAYIQGPV 502 Query: 442 WVG 444 W Sbjct: 503 WTP 505 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 100/309 (32%), Gaps = 51/309 (16%) Query: 175 SRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVAYATY 231 SR+LFV ++ ++ + DG +T + L P SP + Sbjct: 307 SRVLFVRGRFTAPALVSRTIASVPADGGGGPVVTEHTATEGNLLTPAVSPAGRTAW--LR 364 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-----------QKDE 280 R + +D P + + PR+ + ++ LI++ ++ Sbjct: 365 SVPGPARPETITLFVDGEPVAL-DGDLAPAPPRWIGD-EQLLITLGGQFQIIRPHRERTG 422 Query: 281 AMDIYSVDLQSNATERLTNTLFINIS----------ASYSPDSSQIVFESDREGKEQLYV 330 + L+ T + SPD + F + L+ Sbjct: 423 TLVPLDATLRVRRPAYTVKTYALEAERPRPVRGVHLPQLSPDGRTVAFAA----LNSLWT 478 Query: 331 MQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++++G +RI + +Y PVW+P G + +T A+ E +L Sbjct: 479 VRASGGAPRRIVRSSPTAYIQGPVWTPDGRALIYTDDRDGLNAVRRRDLADGTETVLAAG 538 Query: 390 SNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET----------LINTPAYAS 438 +Q P SP G L D L DL E L P+++ Sbjct: 539 GRVQGVP--SPDGTRLACL-----DMAGNLVVRDLAAGTERTLVAALGAGGLPGRPSWSP 591 Query: 439 DPQWVGFMD 447 D +W+ D Sbjct: 592 DGRWIALCD 600 >gi|88802620|ref|ZP_01118147.1| putative protease [Polaribacter irgensii 23-P] gi|88781478|gb|EAR12656.1| putative protease [Polaribacter irgensii 23-P] Length = 1081 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFE 319 + P S G+RA+ + +I++V ++ LTN+ + + S +SP+ ++ + Sbjct: 305 INPNVSPKGERAIFEYRG----EIFTVPKKNGTWRNLTNSSGVADRSPIWSPNGDKVAWF 360 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 SD G+ Q+ + NG++Q+ I YF P WSP G IA+T F I ++ Sbjct: 361 SDASGEYQMVIADQNGANQETIKLPNPTFYFQPDWSPDGKHIAYT---DTNFVIWILNLK 417 Query: 380 GSQERLLVEDS-----NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + + D P WSP + ++++ + S +Y+ ++ + I Sbjct: 418 TKKITKVAADGYAHPNRTMNPKWSPDSDWIAYAKQNKNNFKS-IYAYQISTKKTIQITDL 476 Query: 435 -AYASDPQW 442 A A P W Sbjct: 477 IADAITPVW 485 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 91/239 (38%), Gaps = 31/239 (12%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 ++L +P S Q VA+ D+ +V + R+ + P FS +G Sbjct: 20 NTRLLRQPALS--QTTVAFVH--AGDLWKVGI----AGGNAIRLTSDAGSETDPHFSKDG 71 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--- 326 K + Q D DI+ V +RLT +++ ++PD +I+F SDR K Sbjct: 72 KWIAFTAQYDGNTDIFLVSTSGGEPKRLTYHPSNDVAQGWTPDG-KILFRSDRASKPTQT 130 Query: 327 -QLYVMQSNGSDQK----------RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 Y + + G + +IS+D + P+ S + + G+ I + Sbjct: 131 NTFYTVSTAGGMPEAFGIPRAAYGKISEDNTYMAYTPITSWDAEWRNY--RGGQAMPIWI 188 Query: 376 MKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + + + P W ++ + ++ D + ++S ++ + E + Sbjct: 189 INLETKELTKTPQKDGERHVNPIWYK--GNVYYISER--DYTANIWSYNIKTKKEEQMT 243 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 117/329 (35%), Gaps = 50/329 (15%) Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 +S +++ + S+D+ Q T + +ILF S+ N+ + G Sbjct: 90 STSGGEPKRLTYHPSNDVAQGWTP-----DGKILFRSDRASKPTQTNTFYTVSTAGGMPE 144 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYA----------TYDDEDILRVYLMDTRIDRAPKRIG 254 R + S + +AY Y + +++++ K Sbjct: 145 AFGIPR---AAYGKISEDNTYMAYTPITSWDAEWRNYRGGQAMPIWIINLETKELTKTPQ 201 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + P + G ++D +I+S ++++ E++T ++ + +S+ Sbjct: 202 KDGERHVNPIW-YKGN-VYYISERDYTANIWSYNIKTKKEEQMTFHKKFDVK-NIDANSN 258 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRI--SQDKEASYFDPVW-------------SPQGD 359 QI++ E L+++ + K+I S + +Y W SP+G+ Sbjct: 259 QIIY----EQAGFLHLLNPETKETKQINISVKGDLNYSRTRWMDVPGKKLINPNVSPKGE 314 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSK 417 F I + K R L S ++P WSP+G + + G+ + Sbjct: 315 RAIFEYRG----EIFTVPKKNGTWRNLTNSSGVADRSPIWSPNGDKVAWFSDASGE--YQ 368 Query: 418 LYSIDLNGRNETLI--NTPAYASDPQWVG 444 + D NG N+ I P + P W Sbjct: 369 MVIADQNGANQETIKLPNPTFYFQPDWSP 397 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 57/137 (41%), Gaps = 8/137 (5%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + + + D++GAN + F+P +SP+ + +AY + +++++ Sbjct: 361 SDASGEYQMVIADQNGANQETIKLPNPTFYFQPDWSPDGKHIAYTDTN----FVIWILNL 416 Query: 245 RIDRAPKRIGN---FRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNT 300 + + K + + + P++S + + Q K+ IY+ + + T ++T+ Sbjct: 417 KTKKITKVAADGYAHPNRTMNPKWSPDSDWIAYAKQNKNNFKSIYAYQISTKKTIQITDL 476 Query: 301 LFINISASYSPDSSQIV 317 + I+ + I Sbjct: 477 IADAITPVWDASGKYIY 493 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 19/240 (7%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 +S++ V+ + L + G N LT S +P FS + + +A+ D + + Sbjct: 29 LSQTTVAFVHAGDLWKVGIAGGNAIRLT-SDAGSETDPHFSKDGKWIAFTAQYDGNT-DI 86 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATE 295 +L+ T PKR+ S +A ++ +GK L + + Y+V E Sbjct: 87 FLVST-SGGEPKRLTYHPSNDVAQGWTPDGK-ILFRSDRASKPTQTNTFYTVSTAGGMPE 144 Query: 296 RLTNTLF-------INISASYSPDSSQIV-FESDREGKEQ-LYVMQSNGSDQKRISQDKE 346 N +Y+P +S + + R G+ ++++ + + Q Sbjct: 145 AFGIPRAAYGKISEDNTYMAYTPITSWDAEWRNYRGGQAMPIWIINLETKELTKTPQKDG 204 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 + +P+W + + I +E + + +I+ Sbjct: 205 ERHVNPIW--YKGNVYYISERDYTANIWSYNIKTKKEEQMTFHKKFDVKNIDANSNQIIY 262 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 8/101 (7%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + + DG + P++SP+ +AYA + + +Y + Sbjct: 419 KKITKVAADGY-------AHPNRTMNPKWSPDSDWIAYAKQNKNNFKSIYAYQISTKKTI 471 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + I + + + P + ++GK D + +D+ S Sbjct: 472 Q-ITDLIADAITPVWDASGKYIYTLASTDYGLQSGWLDMSS 511 >gi|298675402|ref|YP_003727152.1| WD40 domain-containing protein beta Propeller [Methanohalobium evestigatum Z-7303] gi|298288390|gb|ADI74356.1| WD40 domain protein beta Propeller [Methanohalobium evestigatum Z-7303] Length = 628 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 28/287 (9%) Query: 175 SRILFVSESVVSGIIKNS---LCVMDRDGANIRYLTPS----------RDQILFEPRFSP 221 +R+ +++ ++ L +M+ DG +I+ + D+++ P +SP Sbjct: 81 TRLTVHAKNKPEATTRSEIKALYLMEADGFDIKRIAWGECTPYTRKVGNDKLIGLPSWSP 140 Query: 222 NQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALIS- 275 + Y + + + +IL +L+ + G+F S + ++S +G L Sbjct: 141 DGDVFTYTSEELAKNGNILGEFLIVDADNLNTIEKGSFISNKIDFIKKWSPDGSYLLYRG 200 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +K E Y +DL N T R T + ++SP ++I F + +G E +V + Sbjct: 201 YKKGEGPKCYLLDLTRNITRRFPITQYNPEDITWSPKGNKIAFLGEDKGNESAFVYNLDN 260 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMK---KDGSQERLLVEDSN 391 + + I K +S +P+WSP G +AF+K + V+ +G +L Sbjct: 261 GNLRNIFSTKNSSIHNPLWSPDGRKLAFSKIEDNNVKDVYVIDINVVNGRPYKLTTLHGG 320 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 + W L+++ D LYSI +N RN+TL+ S Sbjct: 321 ILV-EWL-DSEKLLYTEYSPED---NLYSISVNSRNKTLLYNSTNES 362 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 34/235 (14%) Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-------------SVQKDEAMDIYSVDL 289 DT R+ + +S +G RAL+ + + E +Y ++ Sbjct: 48 DTLDLVNESRLEVDGDPDMYVHWSPDGTRALLLTRLTVHAKNKPEATTRSEIKALYLMEA 107 Query: 290 QSNATERL--------TNTLFIN---ISASYSPDSSQIVFESDREGKE-----QLYVMQS 333 +R+ T + + S+SPD + S+ K + ++ + Sbjct: 108 DGFDIKRIAWGECTPYTRKVGNDKLIGLPSWSPDGDVFTYTSEELAKNGNILGEFLIVDA 167 Query: 334 NGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERL-LVEDS 390 + + ++ S F WSP G + + + GE ++ + R + Sbjct: 168 DNLNTIEKGSFISNKIDFIKKWSPDGSYLLYRGYKKGEGPKCYLLDLTRNITRRFPITQY 227 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 N + TWSP G + F + G+ + +Y++D NG + +T + +P W Sbjct: 228 NPEDITWSPKGNKIAFLGEDKGNESAFVYNLD-NGNLRNIFSTKNSSIHNPLWSP 281 >gi|226226442|ref|YP_002760548.1| hypothetical protein GAU_1036 [Gemmatimonas aurantiaca T-27] gi|226089633|dbj|BAH38078.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 1168 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 28/217 (12%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + L+ S +GK+ + D D+Y++ R+TN L + +SPD Sbjct: 80 LDTREGTWLSVDISPDGKQIVF----DMLGDLYTMPFAGGEATRITNGLAFDAQPRFSPD 135 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEK 370 +VF SDR+G + ++ + ++ K I++ + Y P +SP G I + F G Sbjct: 136 GKSVVFISDRQGADNVHTIDLATNEIKEITRGRTNVYLSPEYSPDGQYIVASKGSFRGAL 195 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAP---------TWSPSGRSLIFSRKKDG------DTG 415 + + G L AP ++SP GR L ++++ Sbjct: 196 PTLWMYHVRGGSGVSLYTAPANAAPGTAVQQAGASFSPDGRYLWYTQRTGAWHYNAQFPQ 255 Query: 416 SKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 ++++ D + +T P + D +W+ + Sbjct: 256 YQVWTYDRETGEREIQSTRYGSAVRPTVSPDGKWMVY 292 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 27/251 (10%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 Y +R+ SP+ +++ + D+L RI N + PR Sbjct: 78 YALDTREGTWLSVDISPDGKQIVF------DMLGDLYTMPFAGGEATRITNGLAFDAQPR 131 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFE--SD 321 FS +GK + + A +++++DL +N + +T S YSPD IV S Sbjct: 132 FSPDGKSVVFISDRQGADNVHTIDLATNEIKEITRGRTNVYLSPEYSPDGQYIVASKGSF 191 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASY-------FDPVWSPQGDLIAFTKFSGE----- 369 R L++ G + + +SP G + +T+ +G Sbjct: 192 RGALPTLWMYHVRGGSGVSLYTAPANAAPGTAVQQAGASFSPDGRYLWYTQRTGAWHYNA 251 Query: 370 ---KFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 ++ + ++ + E + PT SP G+ +++ + + TG ++ DL Sbjct: 252 QFPQYQVWTYDRETGEREIQSTRYGSAVRPTVSPDGKWMVYGSRYENKTGLRIR--DLAS 309 Query: 426 RNETLINTPAY 436 +E + P Sbjct: 310 GDERWLAYPTQ 320 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 96/345 (27%), Gaps = 68/345 (19%) Query: 144 FFSSPASWRKIAH--TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR--- 198 + +W A Y TGE+ ++R VS K + Sbjct: 240 YTQRTGAWHYNAQFPQYQVWTYDRETGEREIQSTRYGSAVRPTVSPDGKWMVYGSRYENK 299 Query: 199 DGANIRYLTPSRDQILFEPR------------------FSPN--------QQKVAYATYD 232 G IR L ++ L P F+P+ +K+ D Sbjct: 300 TGLRIRDLASGDERWLAYPTQRDEMETRAPLDALPGMSFTPDSKEIVASYGKKLWRVAVD 359 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF----------SSNGKRALISVQKDEAM 282 + + + + + +F S +GK+ Sbjct: 360 GSGQVEIPFHVKADVAVGPEVSFTYPISDSAQFTVRQIRDGVMSPDGKQLAFIS----LD 415 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y +D S R++ I ++SPD + + + +LY R+ Sbjct: 416 KLYVMDWPSGTPRRVSTLNDIEAEPAWSPDGRSLAWVTWANNGGRLYKSAMVAGRATRVL 475 Query: 343 Q--DKEASYFDPVWSPQGDLIAFTKFSGEK---------------FAIGVMKKDGSQERL 385 ++ PVWSP G I + + FA +G L Sbjct: 476 PVSASTGTFRQPVWSPNGARILVLQSGAQGRRDQTGVTGTTQLMWFAANSTSTNGDAGTL 535 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + P +S + S L SI +G +E Sbjct: 536 IARAAGRSKPHFSRDTTRIYLSSNNG------LVSIRWDGTDEQR 574 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 103/331 (31%), Gaps = 73/331 (22%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGAN-----------IRYLTPSRDQILFEPRFSPNQQK 225 + F ++ S K+ + + DR GA+ I+ +T R + P +SP+ Q Sbjct: 124 LAFDAQPRFSPDGKSVVFISDRQGADNVHTIDLATNEIKEITRGRTNVYLSPEYSPDGQY 183 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--------ILAPRFSSNGKRALISVQ 277 + + L M + + + FS +G+ + + Sbjct: 184 IVASKGSFRGALPTLWMYHVRGGSGVSLYTAPANAAPGTAVQQAGASFSPDGRYLWYTQR 243 Query: 278 KD--------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 +++ D ++ E + + + SPD +V+ S E K L Sbjct: 244 TGAWHYNAQFPQYQVWTYDRETGEREIQSTRYGSAVRPTVSPDGKWMVYGSRYENKTGLR 303 Query: 330 VMQSNGSDQKRI---SQDKEASYFDP-------VWSPQGDLIAFTKFSGEKFAIGVMKKD 379 + D++ + +Q E P ++P I + + + + V D Sbjct: 304 IRDLASGDERWLAYPTQRDEMETRAPLDALPGMSFTPDSKEIV-ASYGKKLWRVAV---D 359 Query: 380 GSQERLL-------------------------VEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 GS + + ++ SP G+ L F Sbjct: 360 GSGQVEIPFHVKADVAVGPEVSFTYPISDSAQFTVRQIRDGVMSPDGKQLAFIS------ 413 Query: 415 GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 KLY +D +G + ++P W Sbjct: 414 LDKLYVMDWPSGTPRRVSTLNDIEAEPAWSP 444 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 114/356 (32%), Gaps = 87/356 (24%) Query: 115 RVIKEGKDRLRVEFRL-WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 RV +G ++ + F + DV ++ F ISD ++ + Sbjct: 355 RVAVDGSGQVEIPFHVKADVAVGPEV---SFTYP----------ISDSAQFTVRQIR--- 398 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 ++ ++ I + L VMD R ++ D I EP +SP+ + +A+ T+ + Sbjct: 399 -DGVMSPDGKQLAFISLDKLYVMDWPSGTPRRVSTLND-IEAEPAWSPDGRSLAWVTWAN 456 Query: 234 EDILRVYLMDTRIDRAPKR--IGNFRSMILAPRFSSNGKRALI-----SVQKD-----EA 281 R+Y RA + + P +S NG R L+ ++D Sbjct: 457 NGG-RLYKSAMVAGRATRVLPVSASTGTFRQPVWSPNGARILVLQSGAQGRRDQTGVTGT 515 Query: 282 MDIYSVDLQS----NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + S L +S D+++I S L ++ +G+D Sbjct: 516 TQLMWFAANSTSTNGDAGTLIARAAGRSKPHFSRDTTRIYLSS----NNGLVSIRWDGTD 571 Query: 338 QKR------------------------------ISQDKEASYFDPV----WSPQGD---- 359 ++R + ++ S P SP GD Sbjct: 572 EQRHLRVVGGGGDGAADDDHAHTDMTVAELELQRTPEEPNSPGPPAQLVMISPNGDVALA 631 Query: 360 ------LIAFTKFSGEKFAIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFS 407 G + + + + + R L + Q P WS G+ L +S Sbjct: 632 QINQDFYTVTIPPRGTQATVNIADPNTASFPARKLTDIGG-QFPAWSSDGKRLHWS 686 >gi|254387973|ref|ZP_05003210.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|197701697|gb|EDY47509.1| amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1069 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 31/210 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ S +D +++V R T + + ++SPD ++I F S+R Sbjct: 98 PTHSPDGELVAFSAYRDGNHHLWTVRPDGTGLRRRTEGPWDDRGPAWSPDGTRIAFASER 157 Query: 323 EGKE------QLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFS 367 G +++V+ + R++ QD +DP WSP G I F + Sbjct: 158 GGDPATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQ 217 Query: 368 G---------EKFAIGVMKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 G + + + G+ D + AP +P GR L + R Sbjct: 218 GVTTATGPALDARTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLAYLRTTPAPR 277 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + L+G + A P+W Sbjct: 278 AGCVLV--LDGAPVPVTGDLAAVP-PRWTA 304 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 39/221 (17%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 A + G + VQ ++S+ LT ++SPD + F Sbjct: 55 NGAASLAPGGGGLIAEVQ----STLWSLPADGGRATPLTPADLEPARPTHSPDGELVAFS 110 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------FAI 373 + R+G L+ ++ +G+ +R + + P WSP G IAF G + I Sbjct: 111 AYRDGNHHLWTVRPDGTGLRRRT-EGPWDDRGPAWSPDGTRIAFASERGGDPATGAPYRI 169 Query: 374 GVMKKDGSQERLLV-----------EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK----- 417 V+ L PTWSP G ++F R + T + Sbjct: 170 HVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQGVTTATGPALDA 229 Query: 418 --LYSIDLNGRNET----------LINTPAYASDPQWVGFM 446 + ++ G I PA A D + + ++ Sbjct: 230 RTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLAYL 270 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 33/244 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +++L + DG LTP D P SP+ + VA++ Y D + +L R D Sbjct: 72 QSTLWSLPADGGRATPLTP-ADLEPARPTHSPDGELVAFSAYRDGN---HHLWTVRPDGT 127 Query: 250 P-KRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLT---- 298 +R P +S +G R + ++ I+ +DL++ RLT Sbjct: 128 GLRRRTEGPWDDRGPAWSPDGTRIAFASERGGDPATGAPYRIHVLDLRTGNLTRLTGLSG 187 Query: 299 ------NTLFINISASYSPDSSQIVFESDRE---------GKEQLYVMQSNGSDQKRI-- 341 + + + ++SPD ++I+F + + + + G+ Sbjct: 188 QQGPLQDGPWEDYDPTWSPDGTRILFVRGQGVTTATGPALDARTVAAVSATGTGAVTTVH 247 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 + + P +P G +A+ + + A V+ DG+ + D P W+ G Sbjct: 248 TGTADGQIIAPALAPDGRRLAYLRTTPAPRAGCVLVLDGAPVPV-TGDLAAVPPRWTARG 306 Query: 402 RSLI 405 L+ Sbjct: 307 ELLL 310 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 98/279 (35%), Gaps = 41/279 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V + D R + P SP+ ++A+A + ++L T + Sbjct: 338 ARRPRYRVKEYDLGEARVQPVRG---IHLPALSPDGGRIAFAALN-----SLWLAHTNGE 389 Query: 248 RAPKRIGNFRS--MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R P+R+ + +L P + G+ L + +D + I +DL + A + T Sbjct: 390 RPPRRLRTAPATRYLLGPVWDPAGRSLLYADDRDGLLGIRRLDLATGAEQ--TLAAGGRA 447 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGDLIAF 363 + SPD +++ D G +L V ++ ++ P WSP G IA Sbjct: 448 FPALSPDGTRLA-CLDTTG--RLLVRDLVTGAERVLATPLSGGGLPGRPSWSPDGRWIAL 504 Query: 364 T-------KFSGEKFAIGVMKKDGSQERLLV-------EDSNLQAPTWSPSGRSLIFSRK 409 +F + ++ +RL D + P WSP G L Sbjct: 505 CDRNRISLRFREGYNLLRIVDAGTGADRLHTVAPHTSISDRHASGPVWSPDGAWLAVVV- 563 Query: 410 KDGDTGSKLYSIDLNGRN----ETLINTPAYASDPQWVG 444 ++ L + +G L + PA P W G Sbjct: 564 ---ESALCLLPVAPDGTPTGPLRPLTDEPAD--HPSWSG 597 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 94/272 (34%), Gaps = 38/272 (13%) Query: 191 NSLCVMDRDGANI--RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 NSL + +G R T + L P + P + + YA D + +L + +D Sbjct: 379 NSLWLAHTNGERPPRRLRTAPATRYLLGPVWDPAGRSLLYAD-DRDGLLGIRRLDLATGA 437 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN---TLFINI 305 R+ P S +G R D + DL + A L + Sbjct: 438 EQTLAAGGRAF---PALSPDGTRLAC---LDTTGRLLVRDLVTGAERVLATPLSGGGLPG 491 Query: 306 SASYSPDSSQIVFE-------SDREGKEQLYVMQSNGSDQKRI------SQDKEASYFDP 352 S+SPD I REG L ++ + G+ R+ + + P Sbjct: 492 RPSWSPDGRWIALCDRNRISLRFREGYNLLRIVDA-GTGADRLHTVAPHTSISDRHASGP 550 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 VWSP G +A + + DG R L ++ P+WS +L++ Sbjct: 551 VWSPDGAWLAVV--VESALCLLPVAPDGTPTGPLRPLTDEPAD-HPSWSGDSSTLLYLS- 606 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 G++L +I + G T + P P Sbjct: 607 -----GARLRTIPVTGGAPTTVRVPLDLRPPT 633 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 100/313 (31%), Gaps = 55/313 (17%) Query: 175 SRILFVSESVVSGII-----KNSLCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVA 227 +RILFV V+ ++ + G + D + P +P+ +++A Sbjct: 209 TRILFVRGQGVTTATGPALDARTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLA 268 Query: 228 YA-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS------VQKDE 280 Y T V ++D + PR+++ G+ L ++ D Sbjct: 269 YLRTTPAPRAGCVLVLDGAPVPVTGDLAAVP-----PRWTARGELLLTVDGCFTLLRPDR 323 Query: 281 AMDIYSVDLQSNATERLTNTLFINIS--------------ASYSPDSSQIVFESDREGKE 326 ++ T R + SPD +I F + Sbjct: 324 PTAPRTLPFDGTLTARRPRYRVKEYDLGEARVQPVRGIHLPALSPDGGRIAFAA----LN 379 Query: 327 QLYVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 L++ +NG R + A+ + PVW P G + + I + E+ Sbjct: 380 SLWLAHTNGERPPRRLRTAPATRYLLGPVWDPAGRSLLYADDRDGLLGIRRLDLATGAEQ 439 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP---------- 434 L P SP G L DT +L DL E ++ TP Sbjct: 440 TLAAGGRA-FPALSPDGTRLACL-----DTTGRLLVRDLVTGAERVLATPLSGGGLPGRP 493 Query: 435 AYASDPQWVGFMD 447 +++ D +W+ D Sbjct: 494 SWSPDGRWIALCD 506 >gi|294817520|ref|ZP_06776162.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] gi|326446154|ref|ZP_08220888.1| hypothetical protein SclaA2_34047 [Streptomyces clavuligerus ATCC 27064] gi|294322335|gb|EFG04470.1| Amidohydrolase [Streptomyces clavuligerus ATCC 27064] Length = 1087 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 31/210 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G+ S +D +++V R T + + ++SPD ++I F S+R Sbjct: 116 PTHSPDGELVAFSAYRDGNHHLWTVRPDGTGLRRRTEGPWDDRGPAWSPDGTRIAFASER 175 Query: 323 EGKE------QLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFS 367 G +++V+ + R++ QD +DP WSP G I F + Sbjct: 176 GGDPATGAPYRIHVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQ 235 Query: 368 G---------EKFAIGVMKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 G + + + G+ D + AP +P GR L + R Sbjct: 236 GVTTATGPALDARTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLAYLRTTPAPR 295 Query: 415 GSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + L+G + A P+W Sbjct: 296 AGCVLV--LDGAPVPVTGDLAAVP-PRWTA 322 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 39/221 (17%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 A + G + VQ ++S+ LT ++SPD + F Sbjct: 73 NGAASLAPGGGGLIAEVQ----STLWSLPADGGRATPLTPADLEPARPTHSPDGELVAFS 128 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------FAI 373 + R+G L+ ++ +G+ +R + + P WSP G IAF G + I Sbjct: 129 AYRDGNHHLWTVRPDGTGLRRRT-EGPWDDRGPAWSPDGTRIAFASERGGDPATGAPYRI 187 Query: 374 GVMKKDGSQERLLV-----------EDSNLQAPTWSPSGRSLIFSRKKDGDTGSK----- 417 V+ L PTWSP G ++F R + T + Sbjct: 188 HVLDLRTGNLTRLTGLSGQQGPLQDGPWEDYDPTWSPDGTRILFVRGQGVTTATGPALDA 247 Query: 418 --LYSIDLNGRNET----------LINTPAYASDPQWVGFM 446 + ++ G I PA A D + + ++ Sbjct: 248 RTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLAYL 288 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 33/244 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +++L + DG LTP D P SP+ + VA++ Y D + +L R D Sbjct: 90 QSTLWSLPADGGRATPLTP-ADLEPARPTHSPDGELVAFSAYRDGN---HHLWTVRPDGT 145 Query: 250 P-KRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLT---- 298 +R P +S +G R + ++ I+ +DL++ RLT Sbjct: 146 GLRRRTEGPWDDRGPAWSPDGTRIAFASERGGDPATGAPYRIHVLDLRTGNLTRLTGLSG 205 Query: 299 ------NTLFINISASYSPDSSQIVFESDRE---------GKEQLYVMQSNGSDQKRI-- 341 + + + ++SPD ++I+F + + + + G+ Sbjct: 206 QQGPLQDGPWEDYDPTWSPDGTRILFVRGQGVTTATGPALDARTVAAVSATGTGAVTTVH 265 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG 401 + + P +P G +A+ + + A V+ DG+ + D P W+ G Sbjct: 266 TGTADGQIIAPALAPDGRRLAYLRTTPAPRAGCVLVLDGAPVPV-TGDLAAVPPRWTARG 324 Query: 402 RSLI 405 L+ Sbjct: 325 ELLL 328 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 98/279 (35%), Gaps = 41/279 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + V + D R + P SP+ ++A+A + ++L T + Sbjct: 356 ARRPRYRVKEYDLGEARVQPVRG---IHLPALSPDGGRIAFAALN-----SLWLAHTNGE 407 Query: 248 RAPKRIGNFRS--MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R P+R+ + +L P + G+ L + +D + I +DL + A + T Sbjct: 408 RPPRRLRTAPATRYLLGPVWDPAGRSLLYADDRDGLLGIRRLDLATGAEQ--TLAAGGRA 465 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGDLIAF 363 + SPD +++ D G +L V ++ ++ P WSP G IA Sbjct: 466 FPALSPDGTRLA-CLDTTG--RLLVRDLVTGAERVLATPLSGGGLPGRPSWSPDGRWIAL 522 Query: 364 T-------KFSGEKFAIGVMKKDGSQERLLV-------EDSNLQAPTWSPSGRSLIFSRK 409 +F + ++ +RL D + P WSP G L Sbjct: 523 CDRNRISLRFREGYNLLRIVDAGTGADRLHTVAPHTSISDRHASGPVWSPDGAWLAVVV- 581 Query: 410 KDGDTGSKLYSIDLNGRN----ETLINTPAYASDPQWVG 444 ++ L + +G L + PA P W G Sbjct: 582 ---ESALCLLPVAPDGTPTGPLRPLTDEPAD--HPSWSG 615 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 94/272 (34%), Gaps = 38/272 (13%) Query: 191 NSLCVMDRDGANI--RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 NSL + +G R T + L P + P + + YA D + +L + +D Sbjct: 397 NSLWLAHTNGERPPRRLRTAPATRYLLGPVWDPAGRSLLYAD-DRDGLLGIRRLDLATGA 455 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN---TLFINI 305 R+ P S +G R D + DL + A L + Sbjct: 456 EQTLAAGGRAF---PALSPDGTRLAC---LDTTGRLLVRDLVTGAERVLATPLSGGGLPG 509 Query: 306 SASYSPDSSQIVFE-------SDREGKEQLYVMQSNGSDQKRI------SQDKEASYFDP 352 S+SPD I REG L ++ + G+ R+ + + P Sbjct: 510 RPSWSPDGRWIALCDRNRISLRFREGYNLLRIVDA-GTGADRLHTVAPHTSISDRHASGP 568 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 VWSP G +A + + DG R L ++ P+WS +L++ Sbjct: 569 VWSPDGAWLAVV--VESALCLLPVAPDGTPTGPLRPLTDEPAD-HPSWSGDSSTLLYLS- 624 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 G++L +I + G T + P P Sbjct: 625 -----GARLRTIPVTGGAPTTVRVPLDLRPPT 651 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 100/313 (31%), Gaps = 55/313 (17%) Query: 175 SRILFVSESVVSGII-----KNSLCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVA 227 +RILFV V+ ++ + G + D + P +P+ +++A Sbjct: 227 TRILFVRGQGVTTATGPALDARTVAAVSATGTGAVTTVHTGTADGQIIAPALAPDGRRLA 286 Query: 228 YA-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS------VQKDE 280 Y T V ++D + PR+++ G+ L ++ D Sbjct: 287 YLRTTPAPRAGCVLVLDGAPVPVTGDLAAVP-----PRWTARGELLLTVDGCFTLLRPDR 341 Query: 281 AMDIYSVDLQSNATERLTNTLFINIS--------------ASYSPDSSQIVFESDREGKE 326 ++ T R + SPD +I F + Sbjct: 342 PTAPRTLPFDGTLTARRPRYRVKEYDLGEARVQPVRGIHLPALSPDGGRIAFAA----LN 397 Query: 327 QLYVMQSNGSDQKRISQDKEASYF--DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 L++ +NG R + A+ + PVW P G + + I + E+ Sbjct: 398 SLWLAHTNGERPPRRLRTAPATRYLLGPVWDPAGRSLLYADDRDGLLGIRRLDLATGAEQ 457 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP---------- 434 L P SP G L DT +L DL E ++ TP Sbjct: 458 TLAAGGRA-FPALSPDGTRLACL-----DTTGRLLVRDLVTGAERVLATPLSGGGLPGRP 511 Query: 435 AYASDPQWVGFMD 447 +++ D +W+ D Sbjct: 512 SWSPDGRWIALCD 524 >gi|296282776|ref|ZP_06860774.1| peptidase S9, prolyl oligopeptidase active site region [Citromicrobium bathyomarinum JL354] Length = 710 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 90/285 (31%), Gaps = 59/285 (20%) Query: 214 LFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 +P+ SP+ ++AY D ++L+D R K + +PR+S + Sbjct: 65 ASDPQISPDGSQIAYVRQSNDVMSDSTRSAIWLVDARTGEE-KPVAGQDGNAFSPRWSPS 123 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--------- 319 G R + ++ + RLT S ++SPD I + Sbjct: 124 GDRLAFVSTNGGSAQLWVRWMDGGEAVRLTGLPTSPSSMAWSPDGRSIAYTMLVKDDAPK 183 Query: 320 --------------------------------SDREGKEQLYVMQSNGSDQKRISQDKEA 347 + G E+++V+ ++G ++++ Sbjct: 184 LGAAPENKPEGAEWAEPLQIYDLLTYRADGAGYLKPGFEKIFVIPADGGAPRQLTFGPSH 243 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVE-DSNLQAPTWSP 399 WS G I F + I + L + D +P SP Sbjct: 244 DGGPLSWSRDGSTIYFGANRKADWQSDPVESEIYAVDLASGGISQLTDRDGPDHSPRVSP 303 Query: 400 SGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASDPQ 441 G + + D + LY +D +G N ++ T ++ P Sbjct: 304 DGSRIAYLGYDDALRAYENDDLYVMDTDGSNRRIL-TESWDFSPT 347 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 125/384 (32%), Gaps = 69/384 (17%) Query: 55 FVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQV--LV 112 F+ + + +V+ Q + +Q Q + ++ D GA + L Sbjct: 7 FIGASAVALAPATLVA---QNTPPPEPAAQAEAPQSASAEGTVTPGPDRRFTGADLFDLA 63 Query: 113 TGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP--ASWRKIAHT-ISDDIYQSITGE 169 T + D ++ + V+ ++ S+ R ++ + + Sbjct: 64 TASDPQISPDGSQIAY----VRQSNDVMSDSTRSAIWLVDARTGEEKPVAGQDGNAFSPR 119 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 R+ FVS + S L V DG LT +SP+ + +AY Sbjct: 120 WSPSGDRLAFVSTNGGSA----QLWVRWMDGGEAVRLTGLPTSPSSM-AWSPDGRSIAYT 174 Query: 230 TYDDED-------------------ILRVYLMDT--------------------RIDRAP 250 +D L++Y + T AP Sbjct: 175 MLVKDDAPKLGAAPENKPEGAEWAEPLQIYDLLTYRADGAGYLKPGFEKIFVIPADGGAP 234 Query: 251 KRIGNFRSMILAP-RFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLF 302 +++ S P +S +G + IY+VDL S +LT+ Sbjct: 235 RQLTFGPSHDGGPLSWSRDGSTIYFGANRKADWQSDPVESEIYAVDLASGGISQLTDRDG 294 Query: 303 INISASYSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 + S SPD S+I + + + LYVM ++GS+++ +++ + S W Sbjct: 295 PDHSPRVSPDGSRIAYLGYDDALRAYENDDLYVMDTDGSNRRILTESWDFSPTGIEWDAD 354 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGS 381 G I + + + DGS Sbjct: 355 GRAIYAQYDVSGETRVARIGLDGS 378 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKF------AIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 A+ DP SP G IA+ + S + AI ++ +E+ + +D N +P WSP Sbjct: 63 ATASDPQISPDGSQIAYVRQSNDVMSDSTRSAIWLVDARTGEEKPVAGQDGNAFSPRWSP 122 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 SG L F G + +D G L P S W Sbjct: 123 SGDRLAFVSTNGGSAQLWVRWMDG-GEAVRLTGLPTSPSSMAWSP 166 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDL-NGRNETLINTPAYASDP 440 L + + P SP G + + R+ + T S ++ +D G + + A P Sbjct: 59 LFDLATASDPQISPDGSQIAYVRQSNDVMSDSTRSAIWLVDARTGEEKPVAGQDGNAFSP 118 Query: 441 QWVG 444 +W Sbjct: 119 RWSP 122 >gi|83816740|ref|YP_444453.1| hypothetical protein SRU_0307 [Salinibacter ruber DSM 13855] gi|83758134|gb|ABC46247.1| hypothetical protein SRU_0307 [Salinibacter ruber DSM 13855] Length = 995 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 108/299 (36%), Gaps = 32/299 (10%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D Y + G D + + + D G + + +I P Sbjct: 179 DSAYVELFGVSADSLTNEWAEATRDAYEPLMKGRTPPDSAGQTVLAPETNGGRINIAPSL 238 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS---------MILAPRFSSNGK 270 SP+ + VA+ + + +Y+ D + + + + +S +G+ Sbjct: 239 SPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRFISSSGTWSPDGR 298 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----SASYSPDSSQIVFESDREGK 325 R +D I ++ ER + ++ + ++SPD +++ F G Sbjct: 299 RLAFVSSEDGDNQITVWNVVDEEIER---SFSVDGVTSMKNPAWSPDGTRLAFAGTDGGI 355 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE----------KFAIGV 375 LYV+ ++++ D+ A P W+P G+ IAF E +G+ Sbjct: 356 SDLYVLNLETESVRQLTNDRYADL-QPTWAPDGETIAFATDRAETNLETLSPSSNMDLGL 414 Query: 376 MKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + R D+ P ++P G+SL F +DG +Y +DL+ + + Sbjct: 415 VDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDG--FKDVYRMDLSSGDRFRVT 471 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 29/222 (13%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNAT-----ERLTNT-----LF 302 N + +AP S +G+ +++ + ++Y D ++ T F Sbjct: 227 TNGGRINIAPSLSPDGRYVAFISERELFSFNLYVADAETGEVIAELDRAGTTGHFNALRF 286 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLI 361 I+ S ++SPD ++ F S +G Q+ V + +R S D S +P WSP G + Sbjct: 287 ISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPAWSPDGTRL 346 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKK--------DG 412 AF G + V+ + R L D PTW+P G ++ F+ + Sbjct: 347 AFAGTDGGISDLYVLNLETESVRQLTNDRYADLQPTWAPDGETIAFATDRAETNLETLSP 406 Query: 413 DTGSKLYSIDLNGRNETLI--------NTPAYASDPQWVGFM 446 + L +D++ T+ + P +A D Q + F+ Sbjct: 407 SSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFI 448 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 25/209 (11%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANI------------RYLTPSRDQILFEPR 218 G FN+ S S + V DG N R + + P Sbjct: 279 GHFNALRFISSSGTWSPDGRRLAFVSSEDGDNQITVWNVVDEEIERSFSVDGVTSMKNPA 338 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---- 274 +SP+ ++A+A D I +Y+++ + +++ N R L P ++ +G+ Sbjct: 339 WSPDGTRLAFAGTD-GGISDLYVLNLETES-VRQLTNDRYADLQPTWAPDGETIAFATDR 396 Query: 275 ------SVQKDEAMDIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 ++ MD+ VD+ S R ++ + ++PD + F SD++G + Sbjct: 397 AETNLETLSPSSNMDLGLVDVSSGEVTVRAPFGDALHHNPQFAPDGQSLYFISDQDGFKD 456 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +Y M + D+ R+++ K SP Sbjct: 457 VYRMDLSSGDRFRVTRLKTGVSGITALSP 485 >gi|268315847|ref|YP_003289566.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333381|gb|ACY47178.1| peptidase S9 prolyl oligopeptidase active site domain protein [Rhodothermus marinus DSM 4252] Length = 686 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 113/326 (34%), Gaps = 79/326 (24%) Query: 176 RILFVSE--SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 RI+F +++L +M+ DG+ R+L R PR+SP+ ++A+ D Sbjct: 47 RIVFTRRWVDQQKDRWQSALWIMNADGSQQRFLVEGRS-----PRWSPDGTRIAFIANDA 101 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------------- 277 E ++++ + P ++ + + +S +G+ ++ Sbjct: 102 EGRPQIFVKWVDLPEPPTQLTHLTEAPGSITWSPDGRMIAFTMNVPVEVRWNVDLPKPPE 161 Query: 278 ------------------------KDEAMDIYSVDLQSNATERLTNTLFINISA------ 307 ++ ++ + + +LT ++ Sbjct: 162 GATWTKPPRLVRRLHYRADRRGFMEEAYTHLFVIPAEGGTPRQLTEGT-WHVGPRFDGLP 220 Query: 308 -----SYSPDSSQIVF--------ESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPV 353 S++PD IVF DR + LY + ++++++ + P Sbjct: 221 AGATLSWTPDGRTIVFDGFKASADSVDRNYRNAHLYAVDVATRQLRQLTRE-PGRWTQPA 279 Query: 354 WSPQGDLIAF-----TKFSGEKFAIGVMKKDGS-QERLLVE--DSNLQAPTWSPSGRSLI 405 SP G +AF T+ + + +M DGS R L D ++ W+P G + Sbjct: 280 VSPDGRWVAFTGYAETRQTYHAADLWLMPLDGSAAPRNLTRALDRDVSNLHWAPDGSGVY 339 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLI 431 F+ G +Y + G + Sbjct: 340 FTIDDRGTR--NVYFASVRGEVRQVT 363 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 97/306 (31%), Gaps = 75/306 (24%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + +P+ SP+ +++ + + + I A F +PR+S +G R Sbjct: 36 VNDPQISPDGRRIVFTRRWVDQQKDRWQSALWIMNADGSQQRFLVEGRSPRWSPDGTRIA 95 Query: 274 ISVQ-KDEAMDIYS--VDLQSNATERLTNTLFINISASYSPDSSQIVFE----------- 319 + I+ VDL +LT+ S ++SPD I F Sbjct: 96 FIANDAEGRPQIFVKWVDLPE-PPTQLTHLTEAPGSITWSPDGRMIAFTMNVPVEVRWNV 154 Query: 320 ------------------------SDREG-----KEQLYVMQSNGSDQKRIS-------- 342 +DR G L+V+ + G ++++ Sbjct: 155 DLPKPPEGATWTKPPRLVRRLHYRADRRGFMEEAYTHLFVIPAEGGTPRQLTEGTWHVGP 214 Query: 343 -QDKEASYFDPVWSPQGDLIAF---------TKFSGEKFAIGVMKKDGSQERLLV-EDSN 391 D + W+P G I F + + + Q R L E Sbjct: 215 RFDGLPAGATLSWTPDGRTIVFDGFKASADSVDRNYRNAHLYAVDVATRQLRQLTREPGR 274 Query: 392 LQAPTWSPSGRSLIFSRK---KDGDTGSKLYSIDLNG----RNETL-----INTPAYASD 439 P SP GR + F+ + + L+ + L+G RN T ++ +A D Sbjct: 275 WTQPAVSPDGRWVAFTGYAETRQTYHAADLWLMPLDGSAAPRNLTRALDRDVSNLHWAPD 334 Query: 440 PQWVGF 445 V F Sbjct: 335 GSGVYF 340 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 96/327 (29%), Gaps = 68/327 (20%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--- 231 +RI F++ + + V D + +SP+ + +A+ Sbjct: 92 TRIAFIAN---DAEGRPQIFVKWVDLPEPPTQLTHLTEAPGSITWSPDGRMIAFTMNVPV 148 Query: 232 -----------------------------------DDEDILRVYLMDTRIDRAPKRIGNF 256 E+ + P+++ Sbjct: 149 EVRWNVDLPKPPEGATWTKPPRLVRRLHYRADRRGFMEEAYTHLFVIPAEGGTPRQLTEG 208 Query: 257 RSMILAPR-----------FSSNGKRALI--------SVQKD-EAMDIYSVDLQSNATER 296 + PR ++ +G+ + SV ++ +Y+VD+ + + Sbjct: 209 TWHV-GPRFDGLPAGATLSWTPDGRTIVFDGFKASADSVDRNYRNAHLYAVDVATRQLRQ 267 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKR-ISQDKEASYF 350 LT + SPD + F E ++ L++M +GS R +++ + Sbjct: 268 LTREPGRWTQPAVSPDGRWVAFTGYAETRQTYHAADLWLMPLDGSAAPRNLTRALDRDVS 327 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + W+P G + FT + G ++ L + S +G ++ Sbjct: 328 NLHWAPDGSGVYFTIDDRGTRNVYFASVRGEVRQVTRGVHMLTLSSISRNGVAVGVRTSY 387 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYA 437 ++++ + E L Sbjct: 388 HEPDDVVRFALNRPDQIERLTAVNDDV 414 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Query: 330 VMQSNGSDQKRISQDKEASY---FDPVWSPQGDLIAFTKF------SGEKFAIGVMKKDG 380 + ++ + R++ ++ + DP SP G I FT+ + A+ +M DG Sbjct: 14 IAPASHAQSDRLTLERYLEWEDVNDPQISPDGRRIVFTRRWVDQQKDRWQSALWIMNADG 73 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS--IDLNGRNETLINTPAYAS 438 SQ+R LVE +P WSP G + F D + +++ +DL L + Sbjct: 74 SQQRFLVEGR---SPRWSPDGTRIAFIAN-DAEGRPQIFVKWVDLPEPPTQLTHLTEAPG 129 Query: 439 DPQWVG 444 W Sbjct: 130 SITWSP 135 >gi|295702778|ref|YP_003595853.1| putative peptidase [Bacillus megaterium DSM 319] gi|294800437|gb|ADF37503.1| putative peptidase [Bacillus megaterium DSM 319] Length = 659 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 48/255 (18%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 ++ P+ SP+ + V Y + + I Y + + KR+ ++ +P +S +G Sbjct: 20 VYNPQISPDGKSVVYTVRETKKIENAYETQLFMLDIETKETKRLTYYKGNNHSPAWSPDG 79 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------- 319 K + +A+ +Y + + E LT+ + +SP S +I+F Sbjct: 80 KWIAFLSDRSQAVQLYLLAVAGGEAEALTDLEKGVSNPVWSPYSDEIMFSTKVGEKAVRV 139 Query: 320 ------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 SD G Q+ V++ + ++ D + WSP Sbjct: 140 EQNHEYPQPYEVERLLYKSDASGYLKGEYAQVAVVKLKNKEVTFLT-DGPYHHSVGCWSP 198 Query: 357 QGDLIAFTKFSGEK------FAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFS-- 407 + I F GE + ++ +D + + E +WSP G + + Sbjct: 199 DTNSIVFCSSRGENPDLSLTMDVFILHRDTKKVTSITGETGYFHQVSWSPDGSYIAYIGN 258 Query: 408 -RKKDGDTGSKLYSI 421 R + + +Y Sbjct: 259 ERTYGSASMNDIYIY 273 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLV-EDSNLQAPTWSPS 400 S ++P SP G + +T +K + ++ + + + L N +P WSP Sbjct: 19 SVYNPQISPDGKSVVYTVRETKKIENAYETQLFMLDIETKETKRLTYYKGNNHSPAWSPD 78 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVGFMD 447 G+ + F + +LY + + G E L + S+P W + D Sbjct: 79 GKWIAFLSDRS--QAVQLYLLAVAGGEAEALTDLEKGVSNPVWSPYSD 124 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 11/72 (15%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN-------TP 434 L E ++ P SP G+S++++ ++ + ++L+ +D+ + + +P Sbjct: 14 LYELKSVYNPQISPDGKSVVYTVRETKKIENAYETQLFMLDIETKETKRLTYYKGNNHSP 73 Query: 435 AYASDPQWVGFM 446 A++ D +W+ F+ Sbjct: 74 AWSPDGKWIAFL 85 >gi|284046037|ref|YP_003396377.1| Periplasmic component of the Tol biopolymer transport system-like protein [Conexibacter woesei DSM 14684] gi|283950258|gb|ADB53002.1| Periplasmic component of the Tol biopolymer transport system-like protein [Conexibacter woesei DSM 14684] Length = 305 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 25/221 (11%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALIS 275 P +SP+ ++A+ D + R+ R + P FS +G + Sbjct: 90 PAWSPDGTRIAF------DAGTRIGLLDGDGGGTVRLLPARGLNSGRPVFSPSGTQLAFD 143 Query: 276 VQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ DL RLT S ++S + I FE D QLY ++ + Sbjct: 144 AGPSAGGQQLWISDLFGGGARRLTGRGG--RSPAWSTRGT-IAFERD----GQLYAIRPD 196 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 GS +R++ P WSP G +AF + + + VM DGS R + +++ Sbjct: 197 GSGLRRLTGRGGR---APAWSPHGTKLAFVRRRADL--LYVMNADGSGLRQVRGPRGVES 251 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 WSP GR L++ G + +I +GR E + A Sbjct: 252 VRWSPDGRRLVYEAFDAG-----VLTIGTDGRGERQLVQDA 287 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 19/185 (10%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFES 320 P +S +G R D I +D T RL +N +SP +Q+ F++ Sbjct: 89 TPAWSPDGTRIAF----DAGTRIGLLDGDGGGTVRLLPARGLNSGRPVFSPSGTQLAFDA 144 Query: 321 DRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 G +QL++ G +R++ S P WS +G IAF + + ++ D Sbjct: 145 GPSAGGQQLWISDLFGGGARRLTGRGGRS---PAWSTRGT-IAFERDG----QLYAIRPD 196 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 GS R L +AP WSP G L F R++ LY ++ +G + P Sbjct: 197 GSGLRRLTGRGG-RAPAWSPHGTKLAFVRRR----ADLLYVMNADGSGLRQVRGPRGVES 251 Query: 440 PQWVG 444 +W Sbjct: 252 VRWSP 256 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 17/222 (7%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 E F++ + ++ + ++D DG L P+R P FSP+ ++A+ Sbjct: 83 EAPQFDTPAWSPDGTRIAFDAGTRIGLLDGDGGGTVRLLPARGLNSGRPVFSPSGTQLAF 142 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 ++++ D A + G +P +S+ G I+ ++D +Y++ Sbjct: 143 DAGPSAGGQQLWISDLFGGGARRLTGRGG---RSPAWSTRGT---IAFERDG--QLYAIR 194 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + RLT + ++SP +++ F R + LYVM ++GS +++ Sbjct: 195 PDGSGLRRLTGRGG--RAPAWSPHGTKLAFVRRRA--DLLYVMNADGSGLRQV--RGPRG 248 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 WSP G + + F IG DG ER LV+D+ Sbjct: 249 VESVRWSPDGRRLVYEAFDAGVLTIGT---DGRGERQLVQDA 287 >gi|148907920|gb|ABR17080.1| unknown [Picea sitchensis] Length = 714 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 139/398 (34%), Gaps = 68/398 (17%) Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 S + ++IT P + G + V + G D +E ++D+ +K I Sbjct: 309 SSSALVERITPPGIDAFTPAASRTGPWIAV--ATRRPGHDYRHIE--IFDLLKKKFIQVT 364 Query: 143 KFFSSPASWRKIAHTISDDI-YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + SP S SD I Y +G + V E + S + SL + DG+ Sbjct: 365 RL-VSPNSHHYNPFVSSDRIGYHRC---RGGHVGNRVPVLEQIRSPLPSLSLFRI--DGS 418 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 P FSP+ +AY + + V +D R F Sbjct: 419 --------------FPSFSPDGSLIAYIPNIEYSGVYVMRLDGSGRRKI-----FSGAAF 459 Query: 262 APRFSSNGKRALISVQKDEAMD----------IYSVDLQSNATERLT----NTLFINISA 307 + + KR ++ + IY+ D + + ++ N Sbjct: 460 GTAW--DWKRGVVYTSAGPGFETETTTVDIVAIYNADREGTSESEISYKTLTKEGNNAFP 517 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK 365 S SPD +VF S R G + LY+M + ++ + Q E + D WSP G+ IAF Sbjct: 518 SPSPDGKFVVFRSGRTGHKNLYIMDAEEGEEGGLWQLTEGPWTDTMCNWSPDGEWIAFAS 577 Query: 366 FSG----EKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDG------ 412 FA+ + +G+ ++ + P +SP +SL+F+ G Sbjct: 578 DRDSPGSGGFAMYFIHPNGTGLHRVLNSSTAGRVNHPWFSPDSKSLVFTSDYAGVSAEPI 637 Query: 413 ------DTGSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 +++ ++G + AY P W Sbjct: 638 SVPHQFQPYGEIFMARVDGSELQRLTHNAYEDGTPSWG 675 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 22/174 (12%) Query: 269 GKRALISVQKDEA-------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES- 320 G + + + +YS +++ T RLT ++S + SP ++ S Sbjct: 185 GNSMVYVSTRGQTKASRKSWAAVYSTSIKTGRTRRLTPDGIADLSPAVSPSGEWVMAASA 244 Query: 321 -DREGKEQL-------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +R + ++ YV +++ +R+ P W+ + + ++ Sbjct: 245 GERGWQGEIRDLETDLYVFRASDGSGRRLVVKHGG---WPSWADDNTVFFHRQAEDGWWS 301 Query: 373 IGVMKKDGSQ---ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + S ER+ + P S +G + + ++ G + DL Sbjct: 302 VYRASVNSSSALVERITPPGIDAFTPAASRTGPWIAVATRRPGHDYRHIEIFDL 355 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 31/223 (13%) Query: 220 SPNQQKVAYATYD------DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 S + Y + + VY + R +R+ L+P S +G+ + Sbjct: 182 SMAGNSMVYVSTRGQTKASRKSWAAVYSTSIKTGR-TRRLTPDGIADLSPAVSPSGEWVM 240 Query: 274 ISVQ---------KDEAMDIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDRE 323 + +D D+Y + RL S++ D++ + Sbjct: 241 AASAGERGWQGEIRDLETDLYVFRASDGSGRRLVVKHGGW---PSWADDNTVFFHRQAED 297 Query: 324 GKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--FAIGVMKKD 379 G +Y N S +RI+ F P S G IA I + Sbjct: 298 GWWSVYRASVNSSSALVERITPPG-IDAFTPAASRTGPWIAVATRRPGHDYRHIEIFDLL 356 Query: 380 GSQ----ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + RL+ +S+ P S + + R + G G+++ Sbjct: 357 KKKFIQVTRLVSPNSHHYNPFVSSD--RIGYHRCRGGHVGNRV 397 >gi|326798425|ref|YP_004316244.1| peptidase S41 [Sphingobacterium sp. 21] gi|326549189|gb|ADZ77574.1| peptidase S41 [Sphingobacterium sp. 21] Length = 1074 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 31/252 (12%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 ++ EP SP+ Q++A+ + DI V + + + + P +S +G + Sbjct: 48 LISEPGISPDGQEIAFVS--GGDIWTV----SASGGEARLLIAHPAQDSRPLYSPDGSQL 101 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGKEQLY 329 + DIY + L RLT + +S D ++F S D ++ Sbjct: 102 AFVSTRTGNGDIYVLSLSDGKLRRLTYDEGPEELSGWSADGKYLLFHSNTGDIASMYDIW 161 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKF-----------AIGVM 376 + +G +S D+ A+ + V SP IAF +G ++ I + Sbjct: 162 KIPIDGGTPMPVSADRYATEYYGVTSPNNQHIAFAARGMAGAQWWRRGSSHLDQSEIWIR 221 Query: 377 KKDG-----SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + + E P W G+SL F + G L+ DL G+ L Sbjct: 222 PFSTAALSDTDYQQITETGARSVWPMWDADGKSLFFVSDRSG--NQNLWKTDLQGKATML 279 Query: 431 IN-TPAYASDPQ 441 T + P Sbjct: 280 TQFTDSRVLWPS 291 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 31/208 (14%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 +I P S +G+ DI++V L + YSPD SQ+ F Sbjct: 48 LISEPGISPDGQEIAFVS----GGDIWTVSASGGEARLLIAHPAQDSRPLYSPDGSQLAF 103 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---KFAIGV 375 S R G +YV+ + +R++ D E WS G + F +G+ + I Sbjct: 104 VSTRTGNGDIYVLSLSDGKLRRLTYD-EGPEELSGWSADGKYLLFHSNTGDIASMYDIWK 162 Query: 376 MKKDGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYS-----ID------ 422 + DG + D SP+ + + F+ + G G++ + +D Sbjct: 163 IPIDGGTPMPVSADRYATEYYGVTSPNNQHIAFAAR--GMAGAQWWRRGSSHLDQSEIWI 220 Query: 423 --------LNGRNETLINTPAYASDPQW 442 + + + T A + P W Sbjct: 221 RPFSTAALSDTDYQQITETGARSVWPMW 248 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 37/278 (13%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G R L Q P +SP+ ++A+ + + +Y++ D + Sbjct: 68 DIWTVSASGGEARLLIAHPAQ-DSRPLYSPDGSQLAFVSTRTGNG-DIYVLSL-SDGKLR 124 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEA---MDIYSVDLQSNATERLTNTL-FINISA 307 R+ +S++GK L + DI+ + + ++ Sbjct: 125 RLTYDEGPEELSGWSADGKYLLFHSNTGDIASMYDIWKIPIDGGTPMPVSADRYATEYYG 184 Query: 308 SYSPDSSQIVFESD--------REGKEQ-----LYVMQ-----SNGSDQKRISQDKEASY 349 SP++ I F + R G +++ + +D ++I++ A Sbjct: 185 VTSPNNQHIAFAARGMAGAQWWRRGSSHLDQSEIWIRPFSTAALSDTDYQQITETG-ARS 243 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSR 408 P+W G + F + G L DS + P+ + R+++F R Sbjct: 244 VWPMWDADGKSLFFVSDRSGNQNLWKTDLQGKATMLTQFTDSRVLWPSITKDARTIVFER 303 Query: 409 KKDGDTGSKLYSIDLN----GRNETLINTPAYASDPQW 442 K++ D+ G E + A PQ+ Sbjct: 304 D------WKIWKYDVASQKVGALEINLRGNANQQLPQY 335 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 16/199 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +K+ + + D ++ T R+ N + ++S+ K S Sbjct: 348 SPDGKKLVFLAHGD-----LFASSTTARGEAVRLTNTPEIEGNAIWASDSKSIFFSTHST 402 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 E +Y ++ + L S SPD + + + + ++L V ++ Sbjct: 403 EHPKLYRCEVPTQTITSLPLPEGDYNSLVLSPDGNLLAYIRN---TKELAVFDLETKKER 459 Query: 340 RISQD-----KEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQ 393 + + AS WSP G +AF + I + G + + + SN Sbjct: 460 ILYKGSLGRMSFASNISIAWSPDGQYVAFANYDSNAVRNIWLAPYKGGEAKPISFLSNTF 519 Query: 394 APT--WSPSGRSLIFSRKK 410 + WS G+ + F+ + Sbjct: 520 GSSVDWSADGKYIYFATSQ 538 Score = 83.1 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 109/314 (34%), Gaps = 43/314 (13%) Query: 157 TISDDIYQSITGEKGD-------FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 ++SD + +T ++G + + L + + + DG ++ Sbjct: 117 SLSDGKLRRLTYDEGPEELSGWSADGKYLLFHSNTGDIASMYDIWKIPIDGGTPMPVSAD 176 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDI----------------LRVYLMDTRIDRAPKRI 253 R + SPN Q +A+A +R + D ++I Sbjct: 177 RYATEYYGVTSPNNQHIAFAARGMAGAQWWRRGSSHLDQSEIWIRPFSTAALSDTDYQQI 236 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA--TERLTNTLFINISASYSP 311 + + P + ++GK + +++ DLQ A + T++ + S + Sbjct: 237 TETGARSVWPMWDADGKSLFFVSDRSGNQNLWKTDLQGKATMLTQFTDSRVL--WPSITK 294 Query: 312 DSSQIVFESDR--------EGKEQLYVMQSNGSDQKRISQDKEAS--YFDPVWSPQGDLI 361 D+ IVFE D K + G+ +++ Q K+ S + + V SP G + Sbjct: 295 DARTIVFERDWKIWKYDVASQKVGALEINLRGNANQQLPQYKDVSDEFQELVVSPDGKKL 354 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLYS 420 F G+ F + L ++ W+ +S+ FS KLY Sbjct: 355 VFLAH-GDLF--ASSTTARGEAVRLTNTPEIEGNAIWASDSKSIFFST--HSTEHPKLYR 409 Query: 421 IDLNGRNETLINTP 434 ++ + T + P Sbjct: 410 CEVPTQTITSLPLP 423 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 106/342 (30%), Gaps = 68/342 (19%) Query: 131 WDVKDRKQ-IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 +DV +K + + +SD+ + + G +++F++ Sbjct: 310 YDVASQKVGALEINLRGNANQQLPQYKDVSDEFQELVVSPDG---KKLVFLAH------- 359 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI--LRVYLMDTRID 247 L + +I ++ + + + ++T+ E R + I Sbjct: 360 -GDLFASSTTARGEAVRLTNTPEIEGNAIWASDSKSIFFSTHSTEHPKLYRCEVPTQTIT 418 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL------ 301 P G++ S++L S +G ++ DL++ L Sbjct: 419 SLPLPEGDYNSLVL----SPDGNLLAYIRN---TKELAVFDLETKKERILYKGSLGRMSF 471 Query: 302 FINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 NIS ++SPD + F + D +++ G + K IS WS G Sbjct: 472 ASNISIAWSPDGQYVAFANYDSNAVRNIWLAPYKGGEAKPISFLSNTFGSSVDWSADGKY 531 Query: 361 IAF-TKFSGEKFAIGVMKK-------------------------DGSQERL--------- 385 I F T E I ++ D S Sbjct: 532 IYFATSQRTENVRIARVELFPHTKPFQEDNFYQLFKEKSPSAKKDSSITTKVDFKDIKSR 591 Query: 386 ---LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 L D ++ S +G++L+F+ G LYS L+ Sbjct: 592 LSFLPFDESVNNYVISHNGKTLLFAITNLGQQ--NLYSYSLD 631 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 29/254 (11%) Query: 169 EKGDFNSRILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQILFEP-----RFSPN 222 +GD+NS +L ++++ I L V D + R L + +SP+ Sbjct: 423 PEGDYNSLVLSPDGNLLAYIRNTKELAVFDLETKKERILYKGSLGRMSFASNISIAWSPD 482 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEA 281 Q VA+A YD + ++L + A + + +S++GK + Q+ E Sbjct: 483 GQYVAFANYDSNAVRNIWLAPYKGGEAKPISFLSNTFGSSVDWSADGKYIYFATSQRTEN 542 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQLYVMQSNGSDQK 339 + I V+L F + + D+ +F +S K+ + + D K Sbjct: 543 VRIARVEL------------FPHTKP-FQEDNFYQLFKEKSPSAKKDSSITTKVDFKDIK 589 Query: 340 -RISQDK-EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-----LLVEDSNL 392 R+S + S + V S G + F + + + D + + L Sbjct: 590 SRLSFLPFDESVNNYVISHNGKTLLFAITNLGQQNLYSYSLDELSTQPHPKLIFSSRGRL 649 Query: 393 QAPTWSPSGRSLIF 406 + +S + + F Sbjct: 650 GSIQFSKDDKQVYF 663 Score = 44.6 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 71/228 (31%), Gaps = 19/228 (8%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 + ++ +V+ + ++ + G + ++ + +S + + + Sbjct: 473 SNISIAWSPDGQYVAFANYDSNAVRNIWLAPYKGGEAKPISFLSNTFGSSVDWSADGKYI 532 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 +AT + +R+ ++ P + NF + S + K+ + Sbjct: 533 YFATSQRTENVRIARVELFPHTKPFQEDNFYQLFKEK--SPSAKK----------DSSIT 580 Query: 287 VDLQSNATE-RLTNTLFINISASY--SPDSSQIVFESDREGKEQLYVMQSN---GSDQKR 340 + + RL+ F +Y S + ++F G++ LY + + Sbjct: 581 TKVDFKDIKSRLSFLPFDESVNNYVISHNGKTLLFAITNLGQQNLYSYSLDELSTQPHPK 640 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + +S + F G+ F++ + + Sbjct: 641 LIFSSRGRLGSIQFSKDDKQVYFL-QGGKVFSLALASPTPKPLAITAH 687 >gi|168703674|ref|ZP_02735951.1| MdsD protein, putative [Gemmata obscuriglobus UQM 2246] Length = 1087 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 67/364 (18%), Positives = 124/364 (34%), Gaps = 78/364 (21%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 RK+ + + Y + TG F G + + + DG+N + +T D Sbjct: 150 RKLNLFEAKEAYFAPTGGAVAFVRGPGTWYRRGYRGSSNDDIWISGPDGSNPKRVTTF-D 208 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMD-------TRIDRAPKRIGNFRSMILAPR 264 P F+P+ +++ Y T ++ T A + + + R Sbjct: 209 GQDSYPMFAPDARQLFYVTESQSKPGCANVVRQPLAPDFTPAGPAKRITAHDDDTVRRAR 268 Query: 265 FSSNGKRALISVQKDEAMDIYSVDL----------------------------------- 289 S+NG + + D + DL Sbjct: 269 LSANGDWIVYELGADLWVASARSDLPPRKLAIEVNADDKSNTERTHTYTRDATEYALAPD 328 Query: 290 ------------------QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 RLT F + + ++SPD +I+F SDR G LY + Sbjct: 329 EQHAVLVIHGQLFLTKVPGGGKATRLTEHEFADSNPAWSPDGKKILFASDRGGTTDLYAL 388 Query: 332 QSNGSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 +S+ + + + +P +SP GD +AF + + +M+ +GS Sbjct: 389 ESDDPEHSELVKAHKFKTTKLTATTSEELNPTFSPAGDRVAFVREG----KLWLMRPNGS 444 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS--IDLNGRNETLINTPAYASD 439 ++R+LV + W+P G+ + + R DG +++Y D G + + SD Sbjct: 445 EQRVLVSAQKVLDYDWAPDGKHIAYCRM-DGSFAAEVYIQATDGTGTPVNVSRHATWNSD 503 Query: 440 PQWV 443 W Sbjct: 504 VSWS 507 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 26/220 (11%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + P SP+ + VA++ D I + + + + P FS +G+ Sbjct: 25 RFARTPDISPDGKTVAFSYLGD------IWTVEAIGGVARPVTMHEAHDVNPVFSPDGRL 78 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE----GKEQ 327 S + D++ V RLT ++ ++PD +VF S R + Sbjct: 79 IAFSSNRFGQYDVFVVSAAGGKPRRLTFDSAPDMVTGWTPDGKGVVFSSPRSVAYPINTE 138 Query: 328 LYVMQSNGSDQKRI-SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----------IGVM 376 +V+ + G ++++ + + +YF +P G +AF + G + I + Sbjct: 139 CFVVPAEGGAERKLNLFEAKEAYF----APTGGAVAFVRGPGTWYRRGYRGSSNDDIWIS 194 Query: 377 KKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 DGS R+ D P ++P R L + + G Sbjct: 195 GPDGSNPKRVTTFDGQDSYPMFAPDARQLFYVTESQSKPG 234 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 90/288 (31%), Gaps = 47/288 (16%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 I L + G + P +SP+ +K+ +A+ D +Y +++ Sbjct: 336 IHGQLFLTKVPGGGKATRLTEHEFADSNPAWSPDGKKILFAS-DRGGTTDLYALESDDPE 394 Query: 249 APK----------RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + ++ S L P FS G R + ++ + + L Sbjct: 395 HSELVKAHKFKTTKLTATTSEELNPTFSPAGDRVAFVREG----KLWLMRPNGSEQRVLV 450 Query: 299 NT-LFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + ++ ++PD I + D ++Y+ ++G+ D WS Sbjct: 451 SAQKVLDYD--WAPDGKHIAYCRMDGSFAAEVYIQATDGTGTPVNVSRHATWNSDVSWSR 508 Query: 357 QGDLIAFTKFSGEKFAIGVMKK-----DGSQ----------------ERLLVEDSNLQAP 395 +AF + + V+ DG ER + Sbjct: 509 TNGKLAFVGQRRGAYGVHVVSLQKPVADGGTRPPADQIDWDDLHLRVERPTTMSAEYG-- 566 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 T SP G + F GD L+ + NG+ T + P W+ Sbjct: 567 TVSPDGSQVAFRSASSGD---DLWVVSSNGQALTRMTN--GNQTPSWI 609 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 98/276 (35%), Gaps = 36/276 (13%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 + + V+ + ++ G R +T + P FSP+ + +A+++ Sbjct: 26 FARTPDISPDGKTVAFSYLGDIWTVEAIGGVARPVT-MHEAHDVNPVFSPDGRLIAFSSN 84 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE----AMDIYSV 287 + + P+R+ + + ++ +GK + S + + + V Sbjct: 85 RFGQ--YDVFVVSAAGGKPRRLTFDSAPDMVTGWTPDGKGVVFSSPRSVAYPINTECFVV 142 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVF-----ESDREG-----KEQLYVMQSNGSD 337 + A +L LF A ++P + F R G + +++ +GS+ Sbjct: 143 PAEGGAERKL--NLFEAKEAYFAPTGGAVAFVRGPGTWYRRGYRGSSNDDIWISGPDGSN 200 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM---------KKDGSQERLLVE 388 KR++ + P+++P + + S K + G +R+ Sbjct: 201 PKRVTT-FDGQDSYPMFAPDARQLFYVTESQSKPGCANVVRQPLAPDFTPAGPAKRITAH 259 Query: 389 DSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 D + ++ S +G +++ + G+ L+ Sbjct: 260 DDDTVRRARLSANGDWIVY------ELGADLWVASA 289 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 53/338 (15%), Positives = 109/338 (32%), Gaps = 55/338 (16%) Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 Q+ K + R H +D + + + + + +L Sbjct: 338 GQLFLTKVPGGGKATRLTEHEFAD------SNPAWSPDGKKILFASDRGGTTDLYALESD 391 Query: 197 DRDGANI-------RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 D + + + + P FSP +VA+ L R + + Sbjct: 392 DPEHSELVKAHKFKTTKLTATTSEELNPTFSPAGDRVAFVREGK-------LWLMRPNGS 444 Query: 250 PKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQS-NATERLTNTLFINISA 307 +R+ +L ++ +GK + A ++Y ++ N Sbjct: 445 EQRVLVSAQKVLDYDWAPDGKHIAYCRMDGSFAAEVYIQATDGTGTPVNVSRHATWNSDV 504 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQ-----SNGSDQK------------RISQDKEASYF 350 S+S + ++ F R G ++V+ ++G + R+ + S Sbjct: 505 SWSRTNGKLAFVGQRRGAYGVHVVSLQKPVADGGTRPPADQIDWDDLHLRVERPTTMSAE 564 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 SP G +AF S + V+ +G + Q P+W + +S+K Sbjct: 565 YGTVSPDGSQVAFRSASSGD-DLWVVSSNGQALTRMTNG--NQTPSW------IRWSKKS 615 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYAS---DPQWVGF 445 G +Y ++ +G+ L ++ S DP V F Sbjct: 616 HGT----VYFLNGSGQLCYLRTGFSFGSPPLDPTRVPF 649 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 94/312 (30%), Gaps = 83/312 (26%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + V+ G R LT + ++P+ + V +++ Y ++T Sbjct: 87 GQYDVFVVSAAGGKPRRLTFDSAPDMVT-GWTPDGKGVVFSS----PRSVAYPINTECFV 141 Query: 249 APKRIGNFRSMILAPR----FSSNGKRALIS----------VQKDEAMDIYSVDLQSNAT 294 P G R + L F+ G + DI+ + Sbjct: 142 VPAEGGAERKLNLFEAKEAYFAPTGGAVAFVRGPGTWYRRGYRGSSNDDIWISGPDGSNP 201 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ--------SNGSDQKRISQDKE 346 +R+T + ++PD+ Q+ + ++ + K + + KRI+ + Sbjct: 202 KRVTTFDGQDSYPMFAPDARQLFYVTESQSKPGCANVVRQPLAPDFTPAGPAKRITAHDD 261 Query: 347 ASYFDPVWSPQGDLIAFT-------------------------------------KFSGE 369 + S GD I + Sbjct: 262 DTVRRARLSANGDWIVYELGADLWVASARSDLPPRKLAIEVNADDKSNTERTHTYTRDAT 321 Query: 370 KFAIG---------------VMKKDGSQ-ERLLVE-DSNLQAPTWSPSGRSLIFSRKKDG 412 ++A+ + K G L E + P WSP G+ ++F+ + G Sbjct: 322 EYALAPDEQHAVLVIHGQLFLTKVPGGGKATRLTEHEFADSNPAWSPDGKKILFASDRGG 381 Query: 413 DTGSKLYSIDLN 424 T LY+++ + Sbjct: 382 TT--DLYALESD 391 >gi|221212545|ref|ZP_03585522.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1] gi|221167644|gb|EEE00114.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1] Length = 640 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 44/270 (16%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-- 279 + K Y + R+ FS +GK + + ++D Sbjct: 32 DGSKGDLLLYRIGPTTSELYIANADGSDEHRLIASGGFDYHGSFSPDGKWVVFTSERDGL 91 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIVFESDRE-----GKEQLYVMQS 333 +Y V + +RLT+ ++ +A Y P D I F S R G ++ + Sbjct: 92 GHASLYRVRIDGTGLQRLTDWTGVSDAAVYDPADPDVIAFVSSRRDNDTWGTTNIWTLNL 151 Query: 334 NGSDQKRIS------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA--------------- 372 ++ DK S+F P WSP G IAF+ G ++ Sbjct: 152 KTGALHNVTGDIRFDPDKPHSFFRPSWSPDGKWIAFSSDLGTEWRGHNLPVGWERTQETA 211 Query: 373 IGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKK------------DGDTGSKL 418 I ++ DG+ R + +P+WS G+ ++F G S++ Sbjct: 212 IYEIRPDGTGFRQIAARAGYADGSPSWSNDGKQIVFYETPVESTWGAHRPEAIGKVSSQI 271 Query: 419 YSIDL-NGRNETLINTPAYASDPQWVGFMD 447 +D+ G + L +TP + PQ+VG D Sbjct: 272 VQVDVATGVRKQLTDTPGFKVFPQYVGATD 301 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 121/342 (35%), Gaps = 50/342 (14%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHT------ISDDIYQ---------SITGEKGDFNSRIL 178 D KQI+ F+ +P AH +S I Q +T G F Sbjct: 240 NDGKQIV---FYETPVESTWGAHRPEAIGKVSSQIVQVDVATGVRKQLTDTPG-FKVFPQ 295 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V + V+ +KN A T + PR+S + +KV Y Sbjct: 296 YVGATDVAYHVKNGAAEGLYTTAGQSRATAGSG--IRSPRYSADGKKVVYEKVVYSKPFH 353 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS----------VQKDEAMDIYSVD 288 M N+R + + P+ S +GK + + D + + D Sbjct: 354 PNGMPLYRFDPQ---WNYRFVDVFPQLSRDGKSLVYTEKAVGSSIVVADTDFSHARHIYD 410 Query: 289 LQSNA--TERLTNTLFINISASYSPDSSQIVFES-----DREGKE-QLYVMQSNGS--DQ 338 ++ + + L ++SPD +VF R ++ ++++GS + Sbjct: 411 PATSGLDPKLVAMGLAGAFQPTWSPDKQWVVFGVGSWFFTRAHMPGRIARIRADGSMNGK 470 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 I D + + P +SP G I + +S + ++ + + +L + + P WS Sbjct: 471 PEILTDGKENAGFPSYSPDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEPD-NLPGWS 529 Query: 399 PSGRSLIFSR-----KKDGDTGSKLYSIDLNGRNETLINTPA 435 P G ++F+R +Y+I +G + + P Sbjct: 530 PDGTRIVFTRKEVNPNDANKFHFDVYTIKPDGTDVRRLTPPG 571 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 78/215 (36%), Gaps = 33/215 (15%) Query: 214 LFEPRFSPNQQKVAY-------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 F+P +SP++Q V + + D ++ P+ + + + P +S Sbjct: 428 AFQPTWSPDKQWVVFGVGSWFFTRAHMPGRIARIRADGSMNGKPEILTDGKENAGFPSYS 487 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G R + V + + +DL + T LT + +SPD ++IVF Sbjct: 488 PDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEP--DNLPGWSPDGTRIVFTRKEVNPN 545 Query: 327 -------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------- 369 +Y ++ +G+D +R++ A+ W+ G IA++ Sbjct: 546 DANKFHFDVYTIKPDGTDVRRLTPPG-ANQAHATWTWDGR-IAYSSGEYGFRDELSLYDD 603 Query: 370 ----KFAIGVMKKDGSQERLLVED-SNLQAPTWSP 399 VM DGS + + P + P Sbjct: 604 TFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIP 638 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 106/345 (30%), Gaps = 93/345 (26%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY--- 240 + ++ + DG R + P +S + +++ + E + Sbjct: 203 GWERTQETAIYEIRPDGTGFRQIAARAGYADGSPSWSNDGKQIVFYETPVESTWGAHRPE 262 Query: 241 ---------LMDTRIDRAPKRIGNFRSM-------------------------------- 259 + K++ + Sbjct: 263 AIGKVSSQIVQVDVATGVRKQLTDTPGFKVFPQYVGATDVAYHVKNGAAEGLYTTAGQSR 322 Query: 260 ------ILAPRFSSNGKRALI---SVQKDEAMD---IYSVDLQSNATERLTNTLFINISA 307 I +PR+S++GK+ + K + +Y D Q N F+++ Sbjct: 323 ATAGSGIRSPRYSADGKKVVYEKVVYSKPFHPNGMPLYRFDPQW-------NYRFVDVFP 375 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD------------KEASYFDPVWS 355 S D +V+ G + V ++ S + I A F P WS Sbjct: 376 QLSRDGKSLVYTEKAVGSS-IVVADTDFSHARHIYDPATSGLDPKLVAMGLAGAFQPTWS 434 Query: 356 PQGDLIAFT------KFSGEKFAIGVMKKDG---SQERLLVEDS-NLQAPTWSPSGRSLI 405 P + F + I ++ DG + +L + N P++SP G ++ Sbjct: 435 PDKQWVVFGVGSWFFTRAHMPGRIARIRADGSMNGKPEILTDGKENAGFPSYSPDGTRIV 494 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINT-----PAYASDPQWVGF 445 + + D G ++ +DLN R ++ T P ++ D + F Sbjct: 495 YRVWSETDKGLRI--LDLNTRKTMVLTTEPDNLPGWSPDGTRIVF 537 >gi|320106816|ref|YP_004182406.1| hypothetical protein AciPR4_1592 [Terriglobus saanensis SP1PR4] gi|319925337|gb|ADV82412.1| hypothetical protein AciPR4_1592 [Terriglobus saanensis SP1PR4] Length = 650 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 99/295 (33%), Gaps = 39/295 (13%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR-I 246 + + + +G + +T S++ ++S + ++AY + D + V D + + Sbjct: 54 QERGQIALKPVEGGPAKLITHSQEPKSEL-QWSHDGGRIAYISKGDVWTVEVSGGDLKQL 112 Query: 247 DRAPKRIGNFRSMI-LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-- 303 P G+ R P ++ NGK L + ++Y V + L T Sbjct: 113 THDPAGPGDPRGATDHHPLWNPNGKWILYQSGRKGFNELYVVGDDGKEEKLLAATEIYEG 172 Query: 304 --------------------NISASYSPDSSQIVFE-SDR---EGKEQLYVMQSNGSDQK 339 + + S+SPD ++I + R GK ++ V Sbjct: 173 DDVIANTAQDKGDAVSSDRFDPNPSWSPDGTRISYTERSRQFFSGKLKVLVFDQATGTAG 232 Query: 340 RI--------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DS 390 + WSP +A I ++ G + + L + Sbjct: 233 ASIDLYTAKNDPGGAWAVNTASWSPNSSKLAVILQESAWDKIWLISSKGGKPQQLTKGTG 292 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPAYASDPQWVG 444 + P +SP G+ ++F+ +D L+ I G L + S PQW Sbjct: 293 EDENPVYSPDGKWIVFTSNRDLAEERHLWLIPSSGGAPRRLTHLSGNESAPQWSP 347 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 14/172 (8%) Query: 209 SRDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAPKRIG-----NFRSMI 260 S D+ P +SP+ +++Y L+V + D A I N Sbjct: 188 SSDRFDPNPSWSPDGTRISYTERSRQFFSGKLKVLVFDQATGTAGASIDLYTAKNDPGGA 247 Query: 261 LA---PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 A +S N + + +Q+ I+ + + ++LT + + YSPD IV Sbjct: 248 WAVNTASWSPNSSKLAVILQESAWDKIWLISSKGGKPQQLTKGTGEDENPVYSPDGKWIV 307 Query: 318 FESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 F S+R+ + L+++ S+G +R++ + P WSP G I F++ + Sbjct: 308 FTSNRDLAEERHLWLIPSSGGAPRRLTHLS-GNESAPQWSPDGTKIYFSRST 358 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 68/327 (20%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 + ++R QI K PA I H+ + + G RI ++S K Sbjct: 51 FATQERGQIALKPVEGGPAKL--ITHSQEPKSELQWSHDGG----RIAYIS--------K 96 Query: 191 NSLCVMDRDGANIRYLTPS-------RDQILFEPRFSPNQQKVAYATYDDE--------- 234 + ++ G +++ LT R P ++PN + + Y + Sbjct: 97 GDVWTVEVSGGDLKQLTHDPAGPGDPRGATDHHPLWNPNGKWILYQSGRKGFNELYVVGD 156 Query: 235 --------DILRVYLMDTRIDRAPKRIGNFRSMILA---PRFSSNGKRALISVQK----D 279 +Y D I + G+ S P +S +G R + + Sbjct: 157 DGKEEKLLAATEIYEGDDVIANTAQDKGDAVSSDRFDPNPSWSPDGTRISYTERSRQFFS 216 Query: 280 EAMDIYSVDLQSNATERLTNTLFINI--------------SASYSPDSSQIVFESDREGK 325 + + D + T I++ +AS+SP+SS++ Sbjct: 217 GKLKVLVFDQATG-----TAGASIDLYTAKNDPGGAWAVNTASWSPNSSKLAVILQESAW 271 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQE 383 ++++++ S G +++++ +PV+SP G I FT E+ + ++ G Sbjct: 272 DKIWLISSKGGKPQQLTKGT-GEDENPVYSPDGKWIVFTSNRDLAEERHLWLIPSSGGAP 330 Query: 384 RLLVE-DSNLQAPTWSPSGRSLIFSRK 409 R L N AP WSP G + FSR Sbjct: 331 RRLTHLSGNESAPQWSPDGTKIYFSRS 357 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 V S + L ++ G R LT P++SP+ K+ ++ Sbjct: 305 WIVFTSNRDLAEERHLWLIPSSGGAPRRLTH-LSGNESAPQWSPDGTKIYFSRSTALHGP 363 Query: 238 RVYLMDTRIDRAPKRI 253 Y+ +T + Sbjct: 364 SSYVAETAATGEAHPL 379 >gi|221196873|ref|ZP_03569920.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M] gi|221203543|ref|ZP_03576562.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2] gi|221177477|gb|EEE09905.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2] gi|221183427|gb|EEE15827.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M] Length = 640 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 44/270 (16%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-- 279 + K Y + R+ FS +GK + + ++D Sbjct: 32 DGSKGDLLLYRIGPTTSELYIANADGSDEHRLIASGGFDYHGSFSPDGKWVVFTSERDGL 91 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSP-DSSQIVFESDRE-----GKEQLYVMQS 333 +Y V + +RLT+ ++ +A Y P D I F S R G ++ + Sbjct: 92 GHASLYRVRIDGTGLQRLTDWTGVSDAAVYDPADPDVIAFVSSRRDNDTWGTTNIWTLNL 151 Query: 334 NGSDQKRIS------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA--------------- 372 ++ DK S+F P WSP G IAF+ G ++ Sbjct: 152 KTGALHNVTGDIRFDPDKPHSFFRPSWSPDGKWIAFSSDLGTEWRGHNLPVGWERTQETA 211 Query: 373 IGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKK------------DGDTGSKL 418 I ++ DG+ R + +P+WS G+ ++F G S++ Sbjct: 212 IYEIRPDGTGFRQIAARAGYADGSPSWSNDGKQIVFYETPVESTWGAHRPEAIGKVSSQI 271 Query: 419 YSIDL-NGRNETLINTPAYASDPQWVGFMD 447 +D+ G + L +TP + PQ+VG D Sbjct: 272 VQVDVATGVRKQLTDTPGFKVFPQYVGATD 301 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 63/342 (18%), Positives = 120/342 (35%), Gaps = 50/342 (14%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHT------ISDDIYQ---------SITGEKGDFNSRIL 178 D KQI+ F+ +P AH +S I Q +T G F Sbjct: 240 NDGKQIV---FYETPVESTWGAHRPEAIGKVSSQIVQVDVATGVRKQLTDTPG-FKVFPQ 295 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 +V + V+ +KN A T + PR+S + +KV Y Sbjct: 296 YVGATDVAYQVKNGAAEGLYTTAGQSRATAGSG--IRSPRYSADGKKVVYEKVVYSKPFH 353 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS----------VQKDEAMDIYSVD 288 M N+R + + P+ S +GK + + D + + D Sbjct: 354 PNGMPLYRFDPQ---WNYRFVDVFPQLSRDGKSLVYTEKAVGSSIVVADTDFSHARHIYD 410 Query: 289 LQSNA--TERLTNTLFINISASYSPDSSQIVFES-----DREGKE-QLYVMQSNGS--DQ 338 ++ + + L ++SPD + F R ++ ++++GS + Sbjct: 411 PATSGLDPKLVAMGLAGAFQPTWSPDKQWVAFGVGSWFFTRAHMPGRIARIRADGSMNGK 470 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 I D + + P +SP G I + +S + ++ + + +L + + P WS Sbjct: 471 PEILTDGKENAGFPSYSPDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEPD-NLPGWS 529 Query: 399 PSGRSLIFSR-----KKDGDTGSKLYSIDLNGRNETLINTPA 435 P G ++F+R +Y+I +G + + P Sbjct: 530 PDGTRIVFTRKEVNPNDANKFHFDVYTIKPDGTDVRRLTPPG 571 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 33/215 (15%) Query: 214 LFEPRFSPNQQKVAY-------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 F+P +SP++Q VA+ + D ++ P+ + + + P +S Sbjct: 428 AFQPTWSPDKQWVAFGVGSWFFTRAHMPGRIARIRADGSMNGKPEILTDGKENAGFPSYS 487 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G R + V + + +DL + T LT + +SPD ++IVF Sbjct: 488 PDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEP--DNLPGWSPDGTRIVFTRKEVNPN 545 Query: 327 -------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------- 369 +Y ++ +G+D +R++ A+ W+ G IA++ Sbjct: 546 DANKFHFDVYTIKPDGTDVRRLTPPG-ANQAHATWTWDGR-IAYSSGEYGFRDELSLYDD 603 Query: 370 ----KFAIGVMKKDGSQERLLVED-SNLQAPTWSP 399 VM DGS + + P + P Sbjct: 604 TFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIP 638 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 53/345 (15%), Positives = 107/345 (31%), Gaps = 93/345 (26%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY--- 240 + ++ + DG R + P +S + +++ + E + Sbjct: 203 GWERTQETAIYEIRPDGTGFRQIAARAGYADGSPSWSNDGKQIVFYETPVESTWGAHRPE 262 Query: 241 ---------LMDTRIDRAPKRIGNFRSM-------------------------------- 259 + K++ + Sbjct: 263 AIGKVSSQIVQVDVATGVRKQLTDTPGFKVFPQYVGATDVAYQVKNGAAEGLYTTAGQSR 322 Query: 260 ------ILAPRFSSNGKRALI---SVQKDEAMD---IYSVDLQSNATERLTNTLFINISA 307 I +PR+S++GK+ + K + +Y D Q N F+++ Sbjct: 323 ATAGSGIRSPRYSADGKKVVYEKVVYSKPFHPNGMPLYRFDPQW-------NYRFVDVFP 375 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD------------KEASYFDPVWS 355 S D +V+ G + V ++ S + I A F P WS Sbjct: 376 QLSRDGKSLVYTEKAVGSS-IVVADTDFSHARHIYDPATSGLDPKLVAMGLAGAFQPTWS 434 Query: 356 PQGDLIAFT------KFSGEKFAIGVMKKDG---SQERLLVEDS-NLQAPTWSPSGRSLI 405 P +AF + I ++ DG + +L + N P++SP G ++ Sbjct: 435 PDKQWVAFGVGSWFFTRAHMPGRIARIRADGSMNGKPEILTDGKENAGFPSYSPDGTRIV 494 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINT-----PAYASDPQWVGF 445 + + D G ++ +DLN R ++ T P ++ D + F Sbjct: 495 YRVWSETDKGLRI--LDLNTRKTMVLTTEPDNLPGWSPDGTRIVF 537 >gi|256840125|ref|ZP_05545634.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739055|gb|EEU52380.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1080 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 121/337 (35%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D + K R T ++ G + F + S Sbjct: 196 DIWMYDTQTGKH---TNLTDHAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNTPQS 252 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 V +R+L+ DQ L ++ + + Y + +V + R Sbjct: 253 IT-----AVTKFKTHPVRFLSTGSDQTLC---YTYDGE--IYTQRPGSNPQKVRIDLIRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ N + S +GK+ +++ +++ N T+++T+T Sbjct: 303 DQEQIADLNSSKGATSATVSPDGKQIAFTLRG----EVFVTSADYNTTKQITHTPAAETG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWS 355 +SPD+ + + S+R G QLY+ + +++ + K P +S Sbjct: 359 ICFSPDNRTLAYASERGGNWQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + ++ + V+ + + R + + S + +WSP G+ L F Sbjct: 419 PDGKELAFIE---DRMRLMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFI 475 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 K D S + + G T + Y S PQWV Sbjct: 476 GNKH-DPYSDIGLVSAQGGEITNLTNSGYTSTSPQWV 511 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 35/246 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 29 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQASYECTPIWSPDGKQIAFASDR 82 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + + LT I ++++PD ++F + + Sbjct: 83 NGNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTE 142 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S I + Sbjct: 143 LYKVPVGGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSVTRDIWM 199 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L + + ++P G+++ F +++G + +YS LN +++ Sbjct: 200 YDTQTGKHTNLTDHAGEDRNAVFTPDGQTVYFLSERNGGS-FNVYSFPLN-TPQSITAVT 257 Query: 435 AYASDP 440 + + P Sbjct: 258 KFKTHP 263 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 34/215 (15%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S + P + S +G + D IY V + +LT + +SP Sbjct: 16 SYAVTPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSP 71 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 D QI F SDR G L+VM SNG + ++ AS ++P G + F+ Sbjct: 72 DGKQIAFASDRNGNFDLFVMPSNGGTAQCLTT-HSASEIPSAFTPDGKYVLFSASIQDPA 130 Query: 367 ------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------- 411 + + + G + ++ + + SG++ ++ +K Sbjct: 131 QSALFPTSAMTELYKVPVGGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHH 189 Query: 412 -GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L + + + Sbjct: 190 TSSVTRDIWMYDTQTGKHTNLTDHAGEDRNAVFTP 224 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 40 YKGDIYKVPAKGGTATQLTTQAS-YECTPIWSPDGKQIAFASDRNGNFDLFVMPSN--GG 96 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERL 297 + + + + F+ +GK L S + +Y V + TE++ Sbjct: 97 TAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELYKVPVGGGRTEQV 156 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ D Sbjct: 157 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSVTRDIWMYDTQTGKHTNLT-D 212 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG 380 + V++P G + F ++ +G F + + Sbjct: 213 HAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNT 249 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 39/259 (15%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-- 263 L PS+ P+FSP+ +++A+ ED +R+ +++ + +++ + + Sbjct: 404 LLPSKTVERNYPQFSPDGKELAFI----EDRMRLMVVNLET-KKVRQVTDGSTWYSTAGG 458 Query: 264 ---RFSSNGKR--ALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 +S +GK K D DI V Q LTN+ + + S + D + I+ Sbjct: 459 FDYSWSPDGKWFTLRFIGNKHDPYSDIGLVSAQGGEITNLTNSGYTSTSPQWVLDGNAIL 518 Query: 318 FESDREG-----------KEQLYVMQSNGSDQKRISQDKE-------------ASYFDPV 353 F ++R G L M + D+ R+S++ Sbjct: 519 FTTERYGMRAHASWGSLNDAMLVFMNQDAYDKFRLSKEDYELQKELEKEQKEVTGDKADD 578 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 + + + + RL S + + S +G +L + + Sbjct: 579 KKKEDKADEKKDEKPKDIVVELKGIQDRILRLTPNSSEMGSAVISKNGETLYYFS--AFE 636 Query: 414 TGSKLYSIDLNGRNETLIN 432 L+ +DL + L++ Sbjct: 637 DKYDLWKMDLRKKETKLLH 655 >gi|134074975|emb|CAK39055.1| unnamed protein product [Aspergillus niger] Length = 649 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 62/312 (19%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE----DILRVYLMDTRI 246 + L + + DG+N + L S F +SP+ + V + + DI RV + T Sbjct: 18 SELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTST 77 Query: 247 -DRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSNATERLTNTLFIN 304 + + + + + S +GK + + ++ I + L++ + + LT I+ Sbjct: 78 VGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIPGIS 137 Query: 305 -----------ISASYSPDSSQIVFESDR----------EGKEQ-----LYVMQSNGSDQ 338 ++SPD IVF SDR G E +Y + NG+D Sbjct: 138 EAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARPNGTDF 197 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKF-----------------SGEKFAIGVMKKDGS 381 + +S + P +SP G + F + S +I + Sbjct: 198 RLVSSRSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLEGSYLNTSIVSIDFATG 257 Query: 382 QERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-------IN 432 +R++ D +P++ + + K+ G +Y L+G+N T Sbjct: 258 GDRIVHATGDGTKISPSFVTD-DVIGYVMKESASNG--IYYTSLSGKNYTQYQTIPMNTM 314 Query: 433 TPAYASDPQWVG 444 TPA P W Sbjct: 315 TPA-LRSPAWSP 325 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 40/225 (17%) Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 + +Y+ + A +G+ +S + K + ++ D DIY V + Sbjct: 15 PNYSELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAING 74 Query: 292 N-----ATERLTNTLFINISASYSPDSSQIVFESDR-EGKEQLYVMQSNGSDQKRIS--- 342 E + ++ ++ SAS SPD + F + R Q+ +M K ++ Sbjct: 75 TSTVGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIP 134 Query: 343 -------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA---------------IGVMKKDG 380 YF P WSP G+ I FT + I + +G Sbjct: 135 GISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARPNG 194 Query: 381 SQERLLVEDSNL--QAPTWSPSGRSLIFSR-----KKDGDTGSKL 418 + RL+ SN +P +SP+G+ L+F +G +L Sbjct: 195 TDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPEL 239 Score = 83.5 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 120/382 (31%), Gaps = 69/382 (18%) Query: 113 TGRVIKEGKDRLRVEFRLW--DVKDRK---QIIGKKFFSS-------PASWRKIAHTISD 160 G + V + + D + + +++ + ++ +I H D Sbjct: 208 QGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLEGSYLNTSIVSIDFATGGDRIVHATGD 267 Query: 161 DIYQSITGEKGDFNS--RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 T F + I +V + S I + + L P Sbjct: 268 -----GTKISPSFVTDDVIGYVMKESASNGIYYTSLSGKNYTQYQTIPMNTMTPALRSPA 322 Query: 219 FSPNQQKVAY---------ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 +SP+ + V Y + + ++ D D + P Sbjct: 323 WSPDGKYVIYEKQGPTGGSTSTSKKQYSDLWNFDPDWDYRFTDVFPMAKRGGCP------ 376 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLT---------------NTLFINISASYSPD-- 312 +S Q + + + LQ N T+++T S+ P+ Sbjct: 377 -MMAMSQQMEGVAESNLMRLQMNGTDQVTLFETKKGMINPSIAEGFNARAYQGSWGPNDT 435 Query: 313 ----SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 F + ++ + G+ ++ + +Y P ++ G + F + G Sbjct: 436 NITFGYGAYFVGRQSSPGFIFSVTPEGTGVTLLAGNNITNYGFPSYNYDGTQVVFRTWPG 495 Query: 369 EKFA--------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT---GSK 417 + ++ Q L + + P +SP G+ ++F+R+ + D Sbjct: 496 TASNGTTVGTTGLAIVDLPSRQVTQLTTEWD-NLPAFSPDGKKILFTRRTNLDNIGDNYD 554 Query: 418 LYSIDLNGRNETLINTPAYASD 439 +++++ +G T + TP+ ASD Sbjct: 555 IFTMNPDGSELTKL-TPSIASD 575 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 25/145 (17%) Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQ- 382 +LY+ + +GS+ K + F WSP + FT + + I + +G+ Sbjct: 18 SELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTST 77 Query: 383 -----ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG--RNETLINT-- 433 E + + + SP G+ L F+ + T + + G +N TLI Sbjct: 78 VGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIPGIS 137 Query: 434 -------------PAYASDPQWVGF 445 P ++ D +W+ F Sbjct: 138 EAANSALPNGYFKPTWSPDGEWIVF 162 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 59/366 (16%), Positives = 110/366 (30%), Gaps = 105/366 (28%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL----- 237 S + S+ +G + R ++ + PRFSPN +++ + ED Sbjct: 177 SGWEHTQELSIYAARPNGTDFRLVSSRSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQ 236 Query: 238 -----------RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + +D ++P F ++ +++ + IY Sbjct: 237 PELLEGSYLNTSIVSIDFATGGDRIVHATGDGTKISPSFVTD-DVIGYVMKESASNGIYY 295 Query: 287 VDLQSNATERL------TNTLFINISASYSPDSSQIVFE----------------SD--- 321 L + T T + S ++SPD +++E SD Sbjct: 296 TSLSGKNYTQYQTIPMNTMTPAL-RSPAWSPDGKYVIYEKQGPTGGSTSTSKKQYSDLWN 354 Query: 322 -----------------REGKE--------------QLYVMQSNGSDQ------------ 338 R G L +Q NG+DQ Sbjct: 355 FDPDWDYRFTDVFPMAKRGGCPMMAMSQQMEGVAESNLMRLQMNGTDQVTLFETKKGMIN 414 Query: 339 KRISQDKEASYFDPVWSPQGDLI------AFTKFSGEKFAIGVMKKDGSQERLLVED--S 390 I++ A + W P I F I + +G+ LL + + Sbjct: 415 PSIAEGFNARAYQGSWGPNDTNITFGYGAYFVGRQSSPGFIFSVTPEGTGVTLLAGNNIT 474 Query: 391 NLQAPTWSPSGRSLIF------SRKKDGDTGSKLYSIDLNGRNETLINT-----PAYASD 439 N P+++ G ++F + + L +DL R T + T PA++ D Sbjct: 475 NYGFPSYNYDGTQVVFRTWPGTASNGTTVGTTGLAIVDLPSRQVTQLTTEWDNLPAFSPD 534 Query: 440 PQWVGF 445 + + F Sbjct: 535 GKKILF 540 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 79/206 (38%), Gaps = 27/206 (13%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 F FV G + + +G + L + P ++ + +V + T+ Sbjct: 439 FGYGAYFVGRQSSPGF----IFSVTPEGTGVTLLAGNNITNYGFPSYNYDGTQVVFRTWP 494 Query: 233 DEDILRVYLMDTR---IDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKD-----EAMD 283 + T +D +++ + P FS +GK+ L + + + + D Sbjct: 495 GTASNGTTVGTTGLAIVDLPSRQVTQLTTEWDNLPAFSPDGKKILFTRRTNLDNIGDNYD 554 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSS-------------QIVFESDREGKEQLYV 330 I++++ + +LT ++ + A ++ D +++ + + + Sbjct: 555 IFTMNPDGSELTKLTPSIASDAHAVWTQDGRILYSTAMFGFQQEAPLYDDSMQPYAIIML 614 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSP 356 M+++GS++ +S + P+++P Sbjct: 615 MEADGSNKTALS-NSLWEDAMPMFAP 639 >gi|269837019|ref|YP_003319247.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786282|gb|ACZ38425.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 665 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 107/331 (32%), Gaps = 76/331 (22%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 ++S+ V+ DG R T S D PR+SP+ ++A+ + M + Sbjct: 45 KNDYRSSIFVVPVDGGTPRRFT-SADARDSFPRWSPDGSRIAFLSNRTGK--SQVWMISV 101 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------------------------- 277 ++ + + +S +G + + Sbjct: 102 DGGEATQVTDLPEGVTYFAWSPDGSTLALVSKTEAAQLEKREGDEEDEEKSDVVRITRIR 161 Query: 278 ----------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-- 325 D+ I+ + ++T+ F + +SP +I F S+R Sbjct: 162 FRADGVSGFLDDKRSHIWCIPAAGGDPWQVTSGDFDDAWPVWSPGGHEIAFVSNRTEDRE 221 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMK 377 +++ + + G + + I+ +A + PVWS G IAF G V Sbjct: 222 YNTVSEIWAVPARGGEARPIATGDDAYFGRPVWSVDGAAIAFAGHRQPEAGGAIDSHVWV 281 Query: 378 KDGSQERLLVED---------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 DG R L E S W+P G + F G+T +Y + Sbjct: 282 ADGGATRCLTEGLGRTVGDAGINDTFASANPGLAWTPDG-WIYFQVSDSGNT--HVYRVP 338 Query: 423 LNGRNETLINTP-------AYASDPQWVGFM 446 G + +L+ + + D + F+ Sbjct: 339 AGGGDPSLVVGGQRRVLDFSLSPDGSRIAFV 369 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 52/237 (21%) Query: 258 SMILAPRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +++ + S +G+ + D I+ V + R T+ + +SP Sbjct: 20 TLVSDAQISPDGRHVAYTQTILDKEKNDYRSSIFVVPVDGGTPRRFTSADARDSFPRWSP 79 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------ 365 D S+I F S+R GK Q++++ +G + +++ E WSP G +A Sbjct: 80 DGSRIAFLSNRTGKSQVWMISVDGGEATQVTDLPEG-VTYFAWSPDGSTLALVSKTEAAQ 138 Query: 366 --------------------------------FSGEKFAIGVMKKDGSQERLLVE-DSNL 392 ++ I + G + D + Sbjct: 139 LEKREGDEEDEEKSDVVRITRIRFRADGVSGFLDDKRSHIWCIPAAGGDPWQVTSGDFDD 198 Query: 393 QAPTWSPSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLINTP--AYASDPQWV 443 P WSP G + F + D T S+++++ G I T AY P W Sbjct: 199 AWPVWSPGGHEIAFVSNRTEDREYNTVSEIWAVPARGGEARPIATGDDAYFGRPVWS 255 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 48/319 (15%), Positives = 95/319 (29%), Gaps = 68/319 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--- 231 SRI F+S K+ + ++ DG +T + + + +SP+ +A + Sbjct: 82 SRIAFLSNRTG----KSQVWMISVDGGEATQVTDLPEGVTYF-AWSPDGSTLALVSKTEA 136 Query: 232 -----------DDEDILRVYLMDTR----------------------IDRAPKRIGNFRS 258 D+E V + R P ++ + Sbjct: 137 AQLEKREGDEEDEEKSDVVRITRIRFRADGVSGFLDDKRSHIWCIPAAGGDPWQVTSGDF 196 Query: 259 MILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERL-TNTLFINISASYSP 311 P +S G + E + I++V + + T +S Sbjct: 197 DDAWPVWSPGGHEIAFVSNRTEDREYNTVSEIWAVPARGGEARPIATGDDAYFGRPVWSV 256 Query: 312 DSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDP-------------VW 354 D + I F R G +V ++G + +++ + D W Sbjct: 257 DGAAIAFAGHRQPEAGGAIDSHVWVADGGATRCLTEGLGRTVGDAGINDTFASANPGLAW 316 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGD 413 +P G I F + + G L+V + + SP G + F + Sbjct: 317 TPDG-WIYFQVSDSGNTHVYRVPAGGGDPSLVVGGQRRVLDFSLSPDGSRIAFVAGDPLN 375 Query: 414 TGSKLYSIDLNGRNETLIN 432 +Y +G +E + Sbjct: 376 P-CDVYVCRADGSDERRLT 393 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 21/224 (9%) Query: 177 ILFVSESVVSGIIK--NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I FVS + + + G R + D P +S + +A+A + Sbjct: 210 IAFVSNRTEDREYNTVSEIWAVPARGGEARPIATGDDAYFGRPVWSVDGAAIAFAGHRQP 269 Query: 235 DI-----LRVYLMDTRIDRA-----PKRIGN------FRSMILAPRFSSNGKRALISVQK 278 + V++ D R + +G+ F S ++ +G V Sbjct: 270 EAGGAIDSHVWVADGGATRCLTEGLGRTVGDAGINDTFASANPGLAWTPDG-WIYFQVSD 328 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-QLYVMQSNGSD 337 +Y V + + S SPD S+I F + +YV +++GSD Sbjct: 329 SGNTHVYRVPAGGGDPSLVVGGQRRVLDFSLSPDGSRIAFVAGDPLNPCDVYVCRADGSD 388 Query: 338 QKRISQDKEASYFDPVWS-PQGDLIAFTKFSGEKFAIGVMKKDG 380 ++R++ E + S P+ + + VMK G Sbjct: 389 ERRLTAVNEEFFSSVALSQPEEFRVPSHADDRAEIHGWVMKPIG 432 Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 10/79 (12%) Query: 376 MKKDGSQERLLVED-----SNLQAPTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGR 426 M +R L + + + SP GR + +++ + D S ++ + ++G Sbjct: 1 MGASTGAKRRLTPEDIYNITLVSDAQISPDGRHVAYTQTILDKEKNDYRSSIFVVPVDGG 60 Query: 427 NETL-INTPAYASDPQWVG 444 + A S P+W Sbjct: 61 TPRRFTSADARDSFPRWSP 79 >gi|221133936|ref|ZP_03560241.1| amidohydrolase [Glaciecola sp. HTCC2999] Length = 1122 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 34/210 (16%) Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +GK + D DI+ ++ + LT NI + SP+ QI F SDR+G Sbjct: 81 PDGKHIVF----DTLGDIFISSIEGGDAQPLTQDFAWNIHPAVSPNGKQIAFISDRDGLS 136 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI-----AFTKFSGEKFAIGVMKKDGS 381 ++VM +G++ ++++++K P WSP G+ I + S I + G Sbjct: 137 NVWVMNRDGTELRQVTKEKNNIIHAPKWSPDGEYILVTKGIMSSRSIPAGEIWMYHHTGG 196 Query: 382 -----QERL--LVEDSNLQAPTWSPSGRSLIFSRKKDG--------DTGSKLYSIDL--- 423 ++R+ L + N+ P +S G+ + F++ G D + +++I Sbjct: 197 TGLAIKKRVNGLKDQKNIADPAFSHDGQYIYFTQDITGGFRFNYNRDPLTSIFAITRINR 256 Query: 424 -NGRNETLINT------PAYASDPQWVGFM 446 NG E I+ P + D ++V F+ Sbjct: 257 ENGEEERFISGTGGAVVPTPSPDGRYVAFI 286 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 101/302 (33%), Gaps = 45/302 (14%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS-----PNQQKVAYATYDDED 235 + S S + D D N + + E ++ P+ + + + D Sbjct: 36 TSSTDSETVTTEKRFADWDVLNPAFPLNEINVKSNELTWASLDVTPDGKHIVF------D 89 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 L + + + + + + P S NGK+ +D +++ ++ Sbjct: 90 TLGDIFISSIEGGDAQPLTQDFAWNIHPAVSPNGKQIAFISDRDGLSNVWVMNRDGTELR 149 Query: 296 RLTNTL-FINISASYSPDSSQIVFE----SDRE-GKEQLYVMQSNGSDQKRISQDKEA-- 347 ++T I + +SPD I+ S R ++++ G I + Sbjct: 150 QVTKEKNNIIHAPKWSPDGEYILVTKGIMSSRSIPAGEIWMYHHTGGTGLAIKKRVNGLK 209 Query: 348 ---SYFDPVWSPQGDLIAFTKFSGEKFAI--------------GVMKKDGSQERLLVEDS 390 + DP +S G I FT+ F + +++G +ER + Sbjct: 210 DQKNIADPAFSHDGQYIYFTQDITGGFRFNYNRDPLTSIFAITRINRENGEEERFISGTG 269 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-------AYASDPQWV 443 PT SP GR + F R+ T L+ DL +E I + S+ + Sbjct: 270 GAVVPTPSPDGRYVAFIRRIQEKTA--LFLKDLETGSERAIYHDLERDMQEGFGSEGYFS 327 Query: 444 GF 445 F Sbjct: 328 YF 329 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 109/313 (34%), Gaps = 46/313 (14%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F RI + + + S + D + ++P+ Q++ + + Sbjct: 284 AFIRRIQEKTALFLKDLETGSERAIYHDLERDMQEGFGSEGYFSYFDWTPDSQELVF--W 341 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF-------------------SSNGKRA 272 I R+ + D ++ + + A RF S +GK+A Sbjct: 342 TAGKIHRLNINDQSLNTLNINLNSNLKYADAVRFDVNVAPDNFDTKMLRWSQKSPDGKKA 401 Query: 273 LISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 L +Y DLQS T+RLT Y+ D IV+ + + K + Sbjct: 402 LFQA----LGKLYIRDLQSGKTKRLTKQNEHDEYYPRYANDGKSIVYTTWHDQKLGAVRI 457 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------KFAIGVMKKDGSQ 382 S + I + Y +P +SP G + + KF+G + + V+ D Sbjct: 458 VSAKGGKGDIITSQPGHYVEPAFSPDGKKVTYRKFTGGYLLDPAYSIEPGLYVLDLDTKA 517 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLINTPAY---- 436 + + P +S + + F+ G S +L S++L G ++ A Sbjct: 518 TTRISKQG--MQPHFSGANDRVYFTEYVSGTPYSETQLSSVNLAGEDKRTHLYGADKVSE 575 Query: 437 ---ASDPQWVGFM 446 + D +WV F+ Sbjct: 576 YRLSHDNKWVAFV 588 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 97/304 (31%), Gaps = 59/304 (19%) Query: 192 SLCVMDRDGANIRYLTPSRDQI-----LFEPRFSPNQQKVAYATYDDEDILRVYLMD--- 243 + + G + + + + +P FS + Q + + Y D Sbjct: 187 EIWMYHHTGGTGLAIKKRVNGLKDQKNIADPAFSHDGQYIYFTQDITGGFRFNYNRDPLT 246 Query: 244 --------TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 R + +R + + P S +G+ + E ++ DL++ + Sbjct: 247 SIFAITRINRENGEEERFISGTGGAVVPTPSPDGRYVAFIRRIQEKTALFLKDLETGSER 306 Query: 296 RLTNTLFINIS-----------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + + L ++ ++PDS ++VF + +++ + N ++ + Sbjct: 307 AIYHDLERDMQEGFGSEGYFSYFDWTPDSQELVFWT----AGKIHRLNINDQSLNTLNIN 362 Query: 345 KEASYFDP-------------------VW---SPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 ++ W SP G F + + + Sbjct: 363 LNSNLKYADAVRFDVNVAPDNFDTKMLRWSQKSPDGKKALFQALG----KLYIRDLQSGK 418 Query: 383 ERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + L + + P ++ G+S++++ D G+ G+ + + + P + +P Sbjct: 419 TKRLTKQNEHDEYYPRYANDGKSIVYTTWHDQKLGAVRIVSAKGGKGDIITSQPGHYVEP 478 Query: 441 QWVG 444 + Sbjct: 479 AFSP 482 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 61/217 (28%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + S+ EP FSP+ +KV Y + +L P + Sbjct: 467 IITSQPGHYVEPAFSPDGKKVTYRKFT------------------------GGYLLDPAY 502 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +Y +DL + AT R++ + +S + ++ F G Sbjct: 503 SI-------------EPGLYVLDLDTKATTRISKQG---MQPHFSGANDRVYFTEYVSGT 546 Query: 326 E----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 QL + G D KR + S +AF + V+ + Sbjct: 547 PYSETQLSSVNLAGED-KRTHLYGADKVSEYRLSHDNKWVAFVYQ----YNTYVVPFVEN 601 Query: 382 QERLLVEDSNLQAPT------------WSPSGRSLIF 406 +++ + + P W+P SL + Sbjct: 602 GQKITISPTMTSLPVTQISARAGEYLNWAPDNDSLTW 638 >gi|213028843|ref|ZP_03343290.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 141 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 151 WRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 R HT SD++++ +TG KG F +RI +V ++ G L V D DG N +++ Sbjct: 6 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRS 63 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 Q L P +SP+ K+AY T++ ++ T + A +++ +F AP FS +G Sbjct: 64 PQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGT 121 Query: 271 RALISVQKDEAMDIYSV 287 + ++ K ++++Y + Sbjct: 122 KLAFALSKTGSLNLYVM 138 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 12/147 (8%) Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV---DL 289 Y T D +++ + R VQ + Y + D Sbjct: 1 MNKQWLRYAGHTASDEVFEKLTGIKGAFR--------TRIAYVVQTNGGQFPYELRVSDY 52 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + +S ++SPD S++ + + G+ L + ++++ + Sbjct: 53 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN- 111 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVM 376 P +SP G +AF + VM Sbjct: 112 GAPAFSPDGTKLAFALSKTGSLNLYVM 138 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 314 SQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 ++I + G + +L V +G +Q + P WSP G +A+ F + Sbjct: 30 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGR 88 Query: 371 FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A+ + R + + AP +SP G L F+ K G LY + Sbjct: 89 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGS--LNLYVM 138 >gi|295687564|ref|YP_003591257.1| amidohydrolase [Caulobacter segnis ATCC 21756] gi|295429467|gb|ADG08639.1| amidohydrolase [Caulobacter segnis ATCC 21756] Length = 1111 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 15/200 (7%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ A A D+ + RI + S +GK + D Sbjct: 30 PSATPAAGAVKSDKPEKWNVNAPPGVATREVRIAVDNGTWMNVDVSRDGKLIAFDLLGD- 88 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 IY++ + R+ L + +SPD +I F SDR G + ++VM +GSD+++ Sbjct: 89 ---IYTLPIAGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRAGGDNIWVMNVDGSDKRQ 145 Query: 341 ISQDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLLVEDSN---- 391 +++++ P WSP G I T S + V G LV+ ++ Sbjct: 146 VTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEALQ 205 Query: 392 --LQAPTWSPSGRSLIFSRK 409 L P ++ G+S+ ++R Sbjct: 206 KELGEPIYAADGKSVFYTRN 225 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 32/236 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + +A+ D +Y + P RI + PRFS +GKR + + Sbjct: 75 SRDGKLIAFDLLGD-----IYTLPI-AGGTPTRIAEGLAYDQQPRFSPDGKRIAFTSDRA 128 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ +++ + ++T F ++ S+SPD IV F + R G +++V Sbjct: 129 GGDNIWVMNVDGSDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHV 188 Query: 334 NGSD----QKRISQDKEASYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVM 376 +G KR S+ + +P+++ G + +T+ + F I Sbjct: 189 SGGGGVQLVKRASEALQKELGEPIYAADGKSVFYTRNVTPGPIFEYAQDSNTALFDIERY 248 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + V PT SP G + F R++ T SKLY DL E I Sbjct: 249 DLETGEVTTAVSGLGGSVRPTPSPDGGKIAFVRRE--RTKSKLYVKDLTSGEERKI 302 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 69/325 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 RI F S+ + VM+ DG++ R +T ++L +P +SP+ + + + T Sbjct: 120 RIAFTSDRAGGDN----IWVMNVDGSDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTG 175 Query: 232 DDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNGKRALISVQKDEAM----- 282 V++ + + + + P ++++GK + Sbjct: 176 RSLGTGEVWVYHVSGGGGVQLVKRASEALQKELGEPIYAADGKSVFYTRNVTPGPIFEYA 235 Query: 283 --------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 DI DL++ + L ++ + SPD +I F K +LYV Sbjct: 236 QDSNTALFDIERYDLETGEVTTAVSGLGGSVRPTPSPDGGKIAFVRRERTKSKLYVKDLT 295 Query: 335 GSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEK-------------- 370 ++++I + Y + W+P G + F ++G K Sbjct: 296 SGEERKIYDALDQDVQETWAVTGVYPNMAWTPDGATVVF--WAGGKIRRVNVADGASSVI 353 Query: 371 -FAIG----VMKKDGSQERLLVEDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSID 422 F I V+ Q + + + P W SP G+S++F +T KL+ Sbjct: 354 LFKIDDTRVVVDATHPQVEIAPDRFATKMPRWASVSPDGKSVVF------ETLGKLWIKP 407 Query: 423 LNGRNETLINTPAYASD----PQWV 443 +G + T + P W Sbjct: 408 ASGGEPRRLVTGGDEAAFELYPSWS 432 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 51/334 (15%), Positives = 108/334 (32%), Gaps = 58/334 (17%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGI--IKNSLCVMDRDGANIRYLTPSRDQILFE---- 216 ++ + + R + + +G + V G L + L + Sbjct: 151 FRLLNQPSWSPDGRFIVAKKHFTTGRSLGTGEVWVYHVSGGGGVQLVKRASEALQKELGE 210 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMD------------TRIDRAPKRIGNFRSMILAPR 264 P ++ + + V Y + Y D + + P Sbjct: 211 PIYAADGKSVFYTRNVTPGPIFEYAQDSNTALFDIERYDLETGEVTTAVSGLGGSVR-PT 269 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDS 313 S +G + ++ +Y DL S ++ + L ++ + +++PD Sbjct: 270 PSPDGGKIAFVRRERTKSKLYVKDLTSGEERKIYDALDQDVQETWAVTGVYPNMAWTPDG 329 Query: 314 SQIVFESD--------REGKEQLYVMQSNGS--------DQKRISQDKEASYFDPVW--- 354 + +VF + +G + + + + + Q I+ D+ A+ P W Sbjct: 330 ATVVFWAGGKIRRVNVADGASSVILFKIDDTRVVVDATHPQVEIAPDRFATKM-PRWASV 388 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKK 410 SP G + F + + G + R LV + A P+WS GR+++F Sbjct: 389 SPDGKSVVFETLG----KLWIKPASGGEPRRLVTGGDEAAFELYPSWSRDGRTVVFVSWT 444 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D G G + +I P + P++ Sbjct: 445 DAGLGRLRTVAASGGAAKDVIAQPGHYGAPRFSP 478 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 29/264 (10%) Query: 196 MDRDGANIRYLTPSRDQILFEPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + D + + PR+ SP+ + V + T ++++ + Sbjct: 362 VVVDATHPQVEIAPDRFATKMPRWASVSPDGKSVVFETLG-----KLWIKPASGGEPRRL 416 Query: 253 IGNFRSMILA--PRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASY 309 + P +S +G+ + D + +V A + + + + Sbjct: 417 VTGGDEAAFELYPSWSRDGRTVVFVSWTDAGLGRLRTVAASGGAAKDVIAQPGHYGAPRF 476 Query: 310 SPDSSQIVFESDREGK---------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SPD IVFE R G +Y + +G R+S+ + F D Sbjct: 477 SPDGKTIVFERRRGGGLTSSRWSQDPGVYRVAVSGGTPVRVSRGGSSPQFGAA----NDR 532 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD-----TG 415 + +K + G +R+ + SP GR++ F + + G Sbjct: 533 VFMLMSEKDKRQLVSTDLSGQAKRVHASGEMINDYQVSPDGRNVAFRQNYEAFVMPLMPG 592 Query: 416 SKLYSIDLNGRNETLINTPAYASD 439 ++ ++D G + A +D Sbjct: 593 TQEVAVDQKGGPLPVTRVSAEGAD 616 Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 91/274 (33%), Gaps = 30/274 (10%) Query: 158 ISDDIYQSITGEKGDFNSRI---LFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQ 212 + D + + F +++ VS S + + L + G R L D+ Sbjct: 363 VVDATHPQVEIAPDRFATKMPRWASVSPDGKSVVFETLGKLWIKPASGGEPRRLVTGGDE 422 Query: 213 ILF--EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 F P +S + + V + ++ D + R+ + A I APRFS +GK Sbjct: 423 AAFELYPSWSRDGRTVVFVSWTDAGLGRLRTVAASGGAAKDVIAQ-PGHYGAPRFSPDGK 481 Query: 271 RALISVQKDEA---------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 + ++ +Y V + R++ S + + ++ Sbjct: 482 TIVFERRRGGGLTSSRWSQDPGVYRVAVSGGTPVRVSRGGS---SPQFGAANDRVFMLMS 538 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--------SGEKFAI 373 + K QL +G KR+ E D SP G +AF + + Sbjct: 539 EKDKRQLVSTDLSG-QAKRVHASGEM-INDYQVSPDGRNVAFRQNYEAFVMPLMPGTQEV 596 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 V +K G V WS G+ + +S Sbjct: 597 AVDQKGGPLPVTRVSAEGADFINWSKDGKQVHWS 630 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 41/244 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--------------- 262 ++P+ V + + I RV + D +I + R ++ A Sbjct: 324 AWTPDGATVVF--WAGGKIRRVNVADGASSVILFKIDDTRVVVDATHPQVEIAPDRFATK 381 Query: 263 -PRF---SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT---LFINISASYSPDSSQ 315 PR+ S +GK + ++ RL + S+S D Sbjct: 382 MPRWASVSPDGKSVVFET----LGKLWIKPASGGEPRRLVTGGDEAAFELYPSWSRDGRT 437 Query: 316 IVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +VF S + G +L + ++G K + + Y P +SP G I F + G Sbjct: 438 VVFVSWTDAGLGRLRTVAASGGAAKDVI-AQPGHYGAPRFSPDGKTIVFERRRGGGLTSS 496 Query: 375 VMKKDGSQERLLVEDSNL-------QAPTW-SPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 +D R+ V +P + + + R + +KD +L S DL+G+ Sbjct: 497 RWSQDPGVYRVAVSGGTPVRVSRGGSSPQFGAANDRVFMLMSEKDKR---QLVSTDLSGQ 553 Query: 427 NETL 430 + + Sbjct: 554 AKRV 557 Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 84/277 (30%), Gaps = 38/277 (13%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 I + G + + + +++ + + + G + +PRFSP+ + Sbjct: 61 RIAVDNGTWMNVDVSRDGKLIAFDLLGDIYTLPIAGGTPTRIAEGL-AYDQQPRFSPDGK 119 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD- 279 ++A+ + D +++M+ + ++ P +S +G+ + + + Sbjct: 120 RIAFTS-DRAGGDNIWVMNVDGSDKRQVTKEEFRLLNQPSWSPDGRFIVAKKHFTTGRSL 178 Query: 280 EAMDIYSVDLQSNATERLTNTLFIN-----ISASYSPDSSQIVFESDREGKE-------- 326 +++ + +L Y+ D + + + Sbjct: 179 GTGEVWVYHVSGGGGVQLVKRASEALQKELGEPIYAADGKSVFYTRNVTPGPIFEYAQDS 238 Query: 327 -----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + + S P SP G IAF + K + V Sbjct: 239 NTALFDIERYDLETGEVTTAVSGLGGSVR-PTPSPDGGKIAFVRRERTKSKLYVKDLTSG 297 Query: 382 QERLLVE------------DSNLQAPTWSPSGRSLIF 406 +ER + + W+P G +++F Sbjct: 298 EERKIYDALDQDVQETWAVTGVYPNMAWTPDGATVVF 334 >gi|311069718|ref|YP_003974641.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus 1942] gi|310870235|gb|ADP33710.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus 1942] Length = 658 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 104/314 (33%), Gaps = 68/314 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLT-PSRDQILFEPRFSPNQQKVAYATYDDE 234 R FV V + +M D + + ++ EPR+SP+ +++A+ + + Sbjct: 27 RAAFVQTQVNKEKDSYTSHIMVYDTESGHSVPWTYGEKKNSEPRWSPDGRQLAFISDREG 86 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ----------------- 277 D ++Y++ T +++ + + P +S +G L+SV Sbjct: 87 DAPQLYILSTD-GGEARKLTDIPYGVSQPVWSPDGCSLLLSVNLAASEHVNDKEKAEHDN 145 Query: 278 -------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 K I V + ++LT ++ +SPD IVF Sbjct: 146 NEPVEIHSLTYKKDGKGLIKGTYAQIILVSAVTGEIKQLTAHKADHLDPVFSPDGKSIVF 205 Query: 319 ES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----FS 367 + D +Y+M + SD +I+ + +SP G IA + Sbjct: 206 TANLTDQDDASKPYDVYMMSLDSSDVTQITP-HRGFFGSCSFSPDGKYIALLGEEHEYQN 264 Query: 368 GEKFAIGVMKKDGSQERLLVE----------------DSNLQAPTWSPSGRSLIFSRKKD 411 + + + L + + Q P W+ + + Sbjct: 265 ATLTKAWLYHFESGRLTCLTDMLDVHLDDALIGDSLIGGSQQRPVWTKDSQGFYVIGTEQ 324 Query: 412 GDTGSKLYSIDLNG 425 G TG +Y I + G Sbjct: 325 GSTG--IYYISIEG 336 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 58/244 (23%) Query: 259 MILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P +S +GKRA + I D +S + T N +SPD Sbjct: 15 SVTDPHYSPDGKRAAFVQTQVNKEKDSYTSHIMVYDTESGHSVPWTYGEKKNSEPRWSPD 74 Query: 313 SSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------- 364 Q+ F SDREG QLY++ ++G + ++++ D PVWSP G + + Sbjct: 75 GRQLAFISDREGDAPQLYILSTDGGEARKLT-DIPYGVSQPVWSPDGCSLLLSVNLAASE 133 Query: 365 ---------KFSGEKFAIG--VMKKDGSQE-------------------RLLVEDSNLQA 394 + E I KKDG +L ++ Sbjct: 134 HVNDKEKAEHDNNEPVEIHSLTYKKDGKGLIKGTYAQIILVSAVTGEIKQLTAHKADHLD 193 Query: 395 PTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLINTP--------AYASDPQW 442 P +SP G+S++F+ D +Y + L+ + T I TP +++ D ++ Sbjct: 194 PVFSPDGKSIVFTANLTDQDDASKPYDVYMMSLDSSDVTQI-TPHRGFFGSCSFSPDGKY 252 Query: 443 VGFM 446 + + Sbjct: 253 IALL 256 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 63/230 (27%), Gaps = 33/230 (14%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-----DDEDILRVY 240 G + V G + D +P FSP+ + + + D VY Sbjct: 165 KGTYAQIILVSAVTGEIKQLTAHKADH--LDPVFSPDGKSIVFTANLTDQDDASKPYDVY 222 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSNATE 295 +M + I R + FS +GK + Q + +S Sbjct: 223 MMSLDSSDVTQ-ITPHRGFFGSCSFSPDGKYIALLGEEHEYQNATLTKAWLYHFESGRLT 281 Query: 296 RLTN---------------TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQK 339 LT+ ++ DS +G +Y + G + Sbjct: 282 CLTDMLDVHLDDALIGDSLIGGSQQRPVWTKDSQGFYVIGTEQGSTGIYYISIEGLAYPI 341 Query: 340 RISQDKEASYFDPVWSPQGD-LIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 R+ ++ S+ P IA + + +E+ L Sbjct: 342 RLEKEHINSFTLH---PDEQSYIASIVKPTRPSELYSIPLGAGEEKRLTN 388 >gi|255013432|ref|ZP_05285558.1| putative peptidase/protease family protein [Bacteroides sp. 2_1_7] Length = 1071 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 121/337 (35%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D + K R T ++ G + F + S Sbjct: 187 DIWMYDTQTGKH---TNLTDHAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNTPQS 243 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 V +R+L+ DQ L ++ + + Y + +V + R Sbjct: 244 IT-----AVTKFKTHPVRFLSTGSDQTLC---YTYDGE--IYTQRPGSNPQKVRIDLIRD 293 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ N + S +GK+ +++ +++ N T+++T+T Sbjct: 294 DQEQIADLNSSKGATSATVSPDGKQIAFTLRG----EVFVTSADYNTTKQITHTPAAETG 349 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWS 355 +SPD+ + + S+R G QLY+ + +++ + K P +S Sbjct: 350 ICFSPDNRTLAYASERGGNWQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNYPQFS 409 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + ++ + V+ + + R + + S + +WSP G+ L F Sbjct: 410 PDGKELAFIE---DRMRLMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFI 466 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 K D S + + G T + Y S PQWV Sbjct: 467 GNKH-DPYSDIGLVSAQGGEITNLTNSGYTSTSPQWV 502 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 31/254 (12%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 ++ S K + ++ D I L S+ SP+ +++A+ + Sbjct: 274 IYTQRPGSNPQKVRIDLIRDDQEQIADLNSSKGATSA--TVSPDGKQIAFTLRGE----- 326 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + K+I + + FS + + + ++ +Y + Sbjct: 327 -VFVTSADYNTTKQITHTPAAETGICFSPDNRTLAYASERGGNWQLYLAKIARKEEANFP 385 Query: 299 NTLFINIS------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 N I +SPD ++ F DR +L V+ ++++ Sbjct: 386 NATIIEEEVLLPSKTVERNYPQFSPDGKELAFIEDR---MRLMVVNLETKKVRQVTDGST 442 Query: 347 ASY----FDPVWSPQGDL--IAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQ-APTWS 398 FD WSP G + F + + IG++ G + L +P W Sbjct: 443 WYSTAGGFDYSWSPDGKWFTLRFIGNKHDPYSDIGLVSAQGGEITNLTNSGYTSTSPQWV 502 Query: 399 PSGRSLIFSRKKDG 412 G +++F+ ++ G Sbjct: 503 LDGNAILFTTERYG 516 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 35/246 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 20 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQASYECTPIWSPDGKQIAFASDR 73 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + + LT I ++++PD ++F + + Sbjct: 74 NGNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTE 133 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S I + Sbjct: 134 LYKVPVGGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSVTRDIWM 190 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L + + ++P G+++ F +++G + +YS LN +++ Sbjct: 191 YDTQTGKHTNLTDHAGEDRNAVFTPDGQTVYFLSERNGGS-FNVYSFPLN-TPQSITAVT 248 Query: 435 AYASDP 440 + + P Sbjct: 249 KFKTHP 254 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V + +LT + +SPD QI F SDR G Sbjct: 21 SPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNGN 76 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIG 374 L+VM SNG + ++ AS ++P G + F+ + + Sbjct: 77 FDLFVMPSNGGTAQCLTT-HSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELY 135 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ D Sbjct: 136 KVPVGGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSVTRDIWMYDTQ 194 Query: 424 NGRNETLINTPAYASDPQWVG 444 G++ L + + + Sbjct: 195 TGKHTNLTDHAGEDRNAVFTP 215 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 102/260 (39%), Gaps = 41/260 (15%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-- 263 L PS+ P+FSP+ +++A+ ED +R+ +++ + +++ + + Sbjct: 395 LLPSKTVERNYPQFSPDGKELAFI----EDRMRLMVVNLET-KKVRQVTDGSTWYSTAGG 449 Query: 264 ---RFSSNGKR--ALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 +S +GK K D DI V Q LTN+ + + S + D + I+ Sbjct: 450 FDYSWSPDGKWFTLRFIGNKHDPYSDIGLVSAQGGEITNLTNSGYTSTSPQWVLDGNAIL 509 Query: 318 FESDREG-----------KEQLYVMQSNGSDQKRISQ---------DKEASYFDPVWSPQ 357 F ++R G L M + D+ R+S+ +KE + Sbjct: 510 FTTERYGMRAHASWGSLNDAMLVFMNQDAYDKFRLSKEDYELQKELEKEQKEVTGDKTGD 569 Query: 358 GDL--IAFTKFSGEKFAIGVMKKDGSQERLL---VEDSNLQAPTWSPSGRSLIFSRKKDG 412 A K + I V++ G Q+R+L S + + S +G +L + Sbjct: 570 KKKEDKADGKKDEKPKDI-VVELKGIQDRILRLTPNSSEMGSAVISKNGETLYYFS--AF 626 Query: 413 DTGSKLYSIDLNGRNETLIN 432 + L+ +DL + L++ Sbjct: 627 EDKYDLWKMDLRKKETKLLH 646 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 31 YKGDIYKVPAKGGTATQLTTQAS-YECTPIWSPDGKQIAFASDRNGNFDLFVMPSN--GG 87 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERL 297 + + + + F+ +GK L S + +Y V + TE++ Sbjct: 88 TAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELYKVPVGGGRTEQV 147 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ D Sbjct: 148 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSVTRDIWMYDTQTGKHTNLT-D 203 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG 380 + V++P G + F ++ +G F + + Sbjct: 204 HAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNT 240 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G IAF I + G L ++ + P WSP G+ + F+ ++G Sbjct: 20 ISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSPDGKQIAFASDRNG 75 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + NG + T + + P Sbjct: 76 NF--DLFVMPSNGGTAQCLTTHSASEIPS 102 >gi|94971260|ref|YP_593308.1| transcriptional regulatory protein-like [Candidatus Koribacter versatilis Ellin345] gi|94553310|gb|ABF43234.1| transcriptional regulatory protein-like protein [Candidatus Koribacter versatilis Ellin345] Length = 469 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 5/169 (2%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+FS +GKR ++ A D++ + + LT TL + +SPD I Sbjct: 215 GGKNEGPQFSPDGKRLTFMSNRNGATDVWIANASGSDPHPLT-TLGDAGTPRWSPDGQTI 273 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F+S + + ++G R+ +++ P WS G I F +F + + Sbjct: 274 AFDSHIHKYSAILTIPADGG-APRVLIAGDSNNSVPSWSKDGHFIYFASDRTGRFEVWRV 332 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 G + + +D AP S G+ L +++ + +++ + L G Sbjct: 333 PTTGGPAQQITQDGGF-APVESADGKLLFYAKNQ--FPNPEVWEVSLEG 378 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 11/230 (4%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+FSP+ +++ + + + + + P + PR+S +G+ Sbjct: 221 PQFSPDGKRLTFMS--NRNGATDVWIANASGSDPHPLTTL-GDAGTPRWSPDGQTIAFDS 277 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + I ++ A L N S+S D I F SDR G+ +++ + + G Sbjct: 278 HIHKYSAILTIPADGGAPRVLIAGDSNNSVPSWSKDGHFIYFASDRTGRFEVWRVPTTGG 337 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQA 394 ++I+QD F PV S G L+ + K + + +G + + Sbjct: 338 PAQQITQDGG---FAPVESADGKLLFYAKNQFPNPEVWEVSLEGGGVEAPLRPIIRPVTW 394 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 TW+ +G S+ + + G+ L ++ R + P W+ Sbjct: 395 ATWAVAGDSVFYVEEGPGNIAM-LSVVEPKARRMRQVTVLG--RFPFWLA 441 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ++ +T N +SPD ++ F S+R G +++ ++GSD ++ +A Sbjct: 205 VKGVQVTLVTGGK--NEGPQFSPDGKRLTFMSNRNGATDVWIANASGSDPHPLTTLGDA- 261 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFS 407 P WSP G IAF + AI + DG R+L DSN P+WS G + F+ Sbjct: 262 -GTPRWSPDGQTIAFDSHIHKYSAILTIPADGGAPRVLIAGDSNNSVPSWSKDGHFIYFA 320 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + G +++ + G I Sbjct: 321 SDRTGRF--EVWRVPTTGGPAQQITQDGG 347 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 75/240 (31%), Gaps = 55/240 (22%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ F+S + + + + G++ LT D PR+SP+ Q +A+ ++ + Sbjct: 229 RLTFMSNRNGA----TDVWIANASGSDPHPLTTLGD--AGTPRWSPDGQTIAFDSHIHK- 281 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 L AP+ + S P +S +G + + +++ V + Sbjct: 282 -YSAILTIPADGGAPRVLIAGDSNNSVPSWSKDGHFIYFASDRTGRFEVWRVPTTGGPAQ 340 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--------KRISQ---- 343 ++T + S D + + ++ +++ + G + ++ Sbjct: 341 QITQDGGF--APVESADGKLLFYAKNQFPNPEVWEVSLEGGGVEAPLRPIIRPVTWATWA 398 Query: 344 ----------DKEASY-----------------------FDPVWSPQGDLIAFTKFSGEK 370 + + F SP G +AF + E Sbjct: 399 VAGDSVFYVEEGPGNIAMLSVVEPKARRMRQVTVLGRFPFWLAISPDGRKLAFDRTDSES 458 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 3/105 (2%) Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 +++ P +SP G + F + + GS L + P WSP Sbjct: 209 QVTLVTGGKNEGPQFSPDGKRLTFMSNRNGATDVWIANASGSDPHPLTTLGDAGTPRWSP 268 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 G+++ F S + +I +G LI + S P W Sbjct: 269 DGQTIAFDSHIH--KYSAILTIPADGGAPRVLIAGDSNNSVPSWS 311 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + LV + P +SP G+ L F ++G T ++ + +G + + T A P Sbjct: 207 GVQVTLVTGGKNEGPQFSPDGKRLTFMSNRNGAT--DVWIANASGSDPHPLTTLGDAGTP 264 Query: 441 QWVG 444 +W Sbjct: 265 RWSP 268 >gi|284030771|ref|YP_003380702.1| WD40 domain-containing protein beta Propeller [Kribbella flavida DSM 17836] gi|283810064|gb|ADB31903.1| WD40 domain protein beta Propeller [Kribbella flavida DSM 17836] Length = 1043 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 16/233 (6%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + F SP +++A+ D++ + + +R+ + PR+S +G+ Sbjct: 60 EGTNFMVAVSPEGRRLAF------DLVTAIWVTPATGGSAQRLTDDLQDATRPRWSPDGR 113 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK--EQL 328 R + +D ++++ + +LT + ++PD IVF SDR G + Sbjct: 114 RLVFQSYRDGNFHLWTIQPDGRSLRQLTTGRHDHREPHFTPDGRSIVFSSDRGGNGSYGI 173 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV- 387 + + + +++D A +PV SP G IAFT + + R +V Sbjct: 174 HRLDLSTGAIVALTED-PAEEAEPVVSPDGRRIAFTVDTAAIVEL---DLATGVRRTVVA 229 Query: 388 --EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 + P +SPSG+ L R + + + P++AS Sbjct: 230 AQTGITVFGPAYSPSGQ-LAHVRLSGPACDLVIGDAKVTSGQDVFAVPPSWAS 281 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 116/329 (35%), Gaps = 41/329 (12%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 + D K G+ F+ P SW + + G + + F + V+ Sbjct: 261 IGDAKVTSGQDVFAVPPSWASATELFYTADGRVMKHRVGGGSEPVPFTAVVPVTSRRPRP 320 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 V D + + R + + P SP+ + +++ + ++L T P++ Sbjct: 321 -KVPDVESSRSRPVKG-----IASPTVSPDGRWLSFRALNA-----LWLAPTDGRARPRK 369 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I P FS +G+ L + +D D++ DL + ++++ + +SPD Sbjct: 370 IVADGYFNSDPDFSPDGRSLLYASDRDGTADLWLHDLANGTDTKVSSLPGAQTAPRFSPD 429 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------- 365 Q+ ++ D++G +++ ++++ WSP G I Sbjct: 430 GRQVAYQ-DQDG--IAWMLDLGSGQVRQLTPTLFQP-GRVSWSPDGRTIVLAAVKPFTKR 485 Query: 366 -FSGEKFAIGVMKKDGSQE-------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + V S E R L + P +SP GR L F S Sbjct: 486 FREGTSQLLYVDVASTSFEYVEPMPFRSLATRGDD-GPVFSPDGRWLAFV------VESL 538 Query: 418 LYSIDLNGRNE---TLINTPAYASD-PQW 442 LY + ++ R + +D P W Sbjct: 539 LYVVPVDQRGRFTGRPRAVTSEVTDSPVW 567 Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 46/278 (16%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDD----------EDILRVYLMDTRIDRAPKRIGN 255 +T +D P ++ + ++ Y E + ++ R ++ + Sbjct: 266 VTSGQDVFAVPPSWA-SATELFYTADGRVMKHRVGGGSEPVPFTAVVPVTSRRPRPKVPD 324 Query: 256 FRSM-------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISA 307 S I +P S +G+ ++ A ++ + N Sbjct: 325 VESSRSRPVKGIASPTVSPDGRWLSFRA----LNALWLAPTDGRARPRKIVADGYFNSDP 380 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD +++ SDR+G L++ ++S + P +SP G +A+ Sbjct: 381 DFSPDGRSLLYASDRDGTADLWLHDLANGTDTKVSSL-PGAQTAPRFSPDGRQVAYQDQD 439 Query: 368 GEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFS-----RKKDGDTGSKLYSI 421 G ++ Q R L +WSP GR+++ + K+ + S+L + Sbjct: 440 G---IAWMLDLGSGQVRQLTPTLFQPGRVSWSPDGRTIVLAAVKPFTKRFREGTSQLLYV 496 Query: 422 DLNGRN-------------ETLINTPAYASDPQWVGFM 446 D+ + + P ++ D +W+ F+ Sbjct: 497 DVASTSFEYVEPMPFRSLATRGDDGPVFSPDGRWLAFV 534 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 60/349 (17%), Positives = 114/349 (32%), Gaps = 72/349 (20%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A ++DD+ + R++F S + L + DG ++R LT R Sbjct: 93 AQRLTDDLQDATRPRWSPDGRRLVFQSYRDGN----FHLWTIQPDGRSLRQLTTGRHD-H 147 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EP F+P+ + + +++ + A + + P S +G+R Sbjct: 148 REPHFTPDGRSIVFSSDRGGNGSYGIHRLDLSTGAIVALTEDPAEEAEPVVSPDGRRIAF 207 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNT-LFINI-SASYSPDSS------------------ 314 +V + I +DL + + I + +YSP Sbjct: 208 TV---DTAAIVELDLATGVRRTVVAAQTGITVFGPAYSPSGQLAHVRLSGPACDLVIGDA 264 Query: 315 -----QIVFE---SDREGKEQLYVMQ--------SNGSDQKRISQDKEASYF-------- 350 Q VF S E Y GS+ + + Sbjct: 265 KVTSGQDVFAVPPSWASATELFYTADGRVMKHRVGGGSEPVPFTAVVPVTSRRPRPKVPD 324 Query: 351 -------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ--ERLLVEDSNLQAP 395 P SP G ++F + A+ + DG +++ + P Sbjct: 325 VESSRSRPVKGIASPTVSPDGRWLSFRALN----ALWLAPTDGRARPRKIVADGYFNSDP 380 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +SP GRSL+++ +DG L+ + NG + + + P + P++ Sbjct: 381 DFSPDGRSLLYASDRDGTADLWLHDL-ANGTDTKVSSLPGAQTAPRFSP 428 >gi|170574759|ref|XP_001892951.1| WD40-like Beta Propeller Repeat family protein [Brugia malayi] gi|158601263|gb|EDP38222.1| WD40-like Beta Propeller Repeat family protein [Brugia malayi] Length = 693 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 109/344 (31%), Gaps = 89/344 (25%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 F ++F + +S+ + G N FS + + + Sbjct: 11 FAETVIFAELHFSAERHLSSIRQLTFGGQNAEG------------YFSFDGNWLTFQAAG 58 Query: 233 DE-------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 I ++ L + P+RI + F + + + + A Sbjct: 59 ISEYGTSCDQIYKLDLTAPPEKQIPQRISSGIGACTCSYFYPDNRHMIYAGTFQHANFTP 118 Query: 286 SVDLQ------------------------------------------SNATERLTNTLFI 303 SV+++ RLTNT Sbjct: 119 SVNIESCPTKTCQTQRAKTDPHLKHLCNTSYTWDLFPEYDIFKVNEFGTVITRLTNTAGY 178 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + + SPD +IVF S R G ++++M S+G++ ++++ D+ P +SP G I F Sbjct: 179 DAEGAVSPDGRKIVFTSLRSGDPEIWIMNSDGTEPEQLT-DELGYDGGPFFSPDGSKIVF 237 Query: 364 TKFSGE--------------------KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGR 402 + + + DGS + + + AP + P R Sbjct: 238 RASRPNTTERIQTYKDLLSYNLVSPLEMELYTINVDGSGLKKVTSLGGSNWAPFYMPDNR 297 Query: 403 SLIFSRK---KDGDTGS-KLYSIDLNGRNETLI--NTPAYASDP 440 +IFS G G+ LY ID G + I N + + P Sbjct: 298 HIIFSSNFNETGGHFGAFNLYMIDEAGGDVERITFNEGGFDAFP 341 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 33/221 (14%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + + + DI +V T I R+ N S +G++ + + + +I+ Sbjct: 149 YTWDLFPEYDIFKVNEFGTVI----TRLTNTAGYDAEGAVSPDGRKIVFTSLRSGDPEIW 204 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-------------------- 325 ++ E+LT+ L + +SPD S+IVF + R Sbjct: 205 IMNSDGTEPEQLTDELGYDGGPFFSPDGSKIVFRASRPNTTERIQTYKDLLSYNLVSPLE 264 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKD 379 +LY + +GS K+++ +++ P + P I F+ F + ++ + Sbjct: 265 MELYTINVDGSGLKKVTSLGGSNW-APFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEA 323 Query: 380 GSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 G + E P + +GR L++S ++G + S+L Sbjct: 324 GGDVERITFNEGGFDAFPMFDRTGRRLVWSSSRNGRSRSEL 364 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++ V+ N RLTNT + AS S D I+F S R G L++M +G + K+I Sbjct: 524 FELIKVNKYGNFIRRLTNTSGYDGEASISSDGKHIIFTSRRNGDPNLWIMDIDGKNAKQI 583 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKF---------------------AIGVMKKDG 380 ++ S G I F I +M DG Sbjct: 584 TK-TIGYEGGAKLSSDGRFIVFHASRPTSPSQLFKYGWLLRRYNAVELADTQIFLMHSDG 642 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRK-KDGDTGSKLYSIDLNG 425 S R L ++ PT+ + + ++F+ + +++++++G Sbjct: 643 SGLRQLTKNGTNLWPTFL-NNKRILFASSGILENDAFNIFAVNIDG 687 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 81/200 (40%), Gaps = 29/200 (14%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + + ++ G I LT + E SP+ +K+ + + D +++M++ Sbjct: 156 EYDIFKVNEFGTVITRLTNT-AGYDAEGAVSPDGRKIVFTSLRSGDP-EIWIMNSD-GTE 212 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--------------------DIYSVDL 289 P+++ + P FS +G + + + ++Y++++ Sbjct: 213 PEQLTDELGYDGGPFFSPDGSKIVFRASRPNTTERIQTYKDLLSYNLVSPLEMELYTINV 272 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ 343 + +++T+ N + Y PD+ I+F S+ G LY++ G D +RI+ Sbjct: 273 DGSGLKKVTSLGGSNWAPFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEAGGDVERITF 332 Query: 344 DKEASYFDPVWSPQGDLIAF 363 ++ P++ G + + Sbjct: 333 NEGGFDAFPMFDRTGRRLVW 352 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + +R+ N SS+GK + + +++ +++ +D+ +++T T+ Sbjct: 531 KYGNFIRRLTNTSGYDGEASISSDGKHIIFTSRRNGDPNLWIMDIDGKNAKQITKTIGYE 590 Query: 305 ISASYSPDSSQIVFESDREGKE---------------------QLYVMQSNGSDQKRISQ 343 A S D IVF + R Q+++M S+GS +++++ Sbjct: 591 GGAKLSSDGRFIVFHASRPTSPSQLFKYGWLLRRYNAVELADTQIFLMHSDGSGLRQLTK 650 Query: 344 DKEASYFDPVWSPQGDLIAFTK---FSGEKFAIGVMKKDGSQERL 385 + + + I F + F I + DGS+ Sbjct: 651 NGTNLWPTFL---NNKRILFASSGILENDAFNIFAVNIDGSELEQ 692 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 46/360 (12%), Positives = 103/360 (28%), Gaps = 98/360 (27%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE------- 234 +L ++D G ++ +T + P F +++ +++ + Sbjct: 306 NETGGHFGAFNLYMIDEAGGDVERITFNEGGFDAFPMFDRTGRRLVWSSSRNGRSRSELN 365 Query: 235 ----DILRVYLMDTRIDRAPKRIGNF--------------------RSMILAPRFSSNGK 270 D L M+ + + + + + +A FS + K Sbjct: 366 LFIADWLDNGTMNIANEMKEENLTSSNLLSIMMKKNYPKKIEQLTNDDINMAGSFSFDDK 425 Query: 271 RALISVQKDEAMDI---YSVDLQSNATER----LTNTLFINISASYSPDSSQIVFESD-- 321 R + D DL +++ R L+ + I S SY D + I++ S+ Sbjct: 426 RVIYEGYGTHLYDAACEQIFDLDXSSSSRRIRRLSTGIGITRSPSYISDDNIIIYASNIL 485 Query: 322 ----------------------------REGKEQLY------VMQSNGSDQKRISQDKEA 347 R +LY + G+ +R++ + Sbjct: 486 TANRSILNSCPRRVCATARKSWIKEICKRSHVLELYPDFELIKVNKYGNFIRRLT-NTSG 544 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF 406 + S G I FT + +M DG + + + S GR ++F Sbjct: 545 YDGEASISSDGKHIIFTSRRNGDPNLWIMDIDGKNAKQITKTIGYEGGAKLSSDGRFIVF 604 Query: 407 SRKKDGDTG-------------------SKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + ++++ + +G + P F++ Sbjct: 605 HASRPTSPSQLFKYGWLLRRYNAVELADTQIFLMHSDGSGLRQLTKNGTNLWPT---FLN 661 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 26/235 (11%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--- 282 + + + + I + R F FS +G Sbjct: 6 IFFFLFAETVIFAELHFSAERHLSSIRQLTFGGQNAEGYFSFDGNWLTFQAAGISEYGTS 65 Query: 283 --DIYSVDL----QSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----QLYVM 331 IY +DL + +R+++ + + + PD+ +++ + + Sbjct: 66 CDQIYKLDLTAPPEKQIPQRISSGIGACTCSYFYPDNRHMIYAGTFQHANFTPSVNIESC 125 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + +R D + +T ++ I + + G+ L + Sbjct: 126 PTKTCQTQRAKTDPHLKHLCNTS--------YTWDLFPEYDIFKVNEFGTVITRLTNTAG 177 Query: 392 LQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 A SP GR ++F+ + GD +++ ++ +G E L + Y P + Sbjct: 178 YDAEGAVSPDGRKIVFTSLRSGD--PEIWIMNSDGTEPEQLTDELGYDGGPFFSP 230 Score = 41.5 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 55/168 (32%), Gaps = 35/168 (20%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 I+F S L +MD DG N + +T + + S + + + + Sbjct: 557 HIIFTSRRNGDPN----LWIMDIDGKNAKQITKT-IGYEGGAKLSSDGRFIVFHASRPTS 611 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +++ + + + + I+ + + Sbjct: 612 PSQLFKYGWLLR----------------------RYNAVELA---DTQIFLMHSDGSGLR 646 Query: 296 RLTNTLFINISASYSPDSSQIVFESD---REGKEQLYVMQSNGSDQKR 340 +LT N+ ++ ++ +I+F S ++ + +GS+ ++ Sbjct: 647 QLTKN-GTNLWPTFL-NNKRILFASSGILENDAFNIFAVNIDGSELEQ 692 >gi|262381631|ref|ZP_06074769.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296808|gb|EEY84738.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1080 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 122/337 (36%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D + K R T ++ G + F + S Sbjct: 196 DIWMYDTQTGKH---TNLTDHAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNTPQS 252 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 V +R+L+ DQ L ++ + + Y + +V + R Sbjct: 253 IT-----AVTKFKTHPVRFLSTGSDQTLC---YTYDGE--IYTQRPGSNPQKVRIDLIRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ N + S +GK+ ++++ +++ N T+++TNT Sbjct: 303 DQEQISDLNSSKGATSATVSPDGKQIALTLRG----EVFVTSADYNTTKQITNTPAAETG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWS 355 +SPD+ + + S+R G QLY+ + +++ + K P +S Sbjct: 359 VCFSPDNRTLAYASERGGNWQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + ++ + V+ + + R + + S + +WSP G+ L F Sbjct: 419 PDGKELAFIE---DRMRLMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFI 475 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 K D S + + G T + Y S PQWV Sbjct: 476 GNKH-DPYSDIGLVSAQGGEITNLTNSGYTSISPQWV 511 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 34/215 (15%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S + P + S +G + D IY V + +LT + +SP Sbjct: 16 SYAVTPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSP 71 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 D QI F SDR G L+VM SNG + ++ AS ++P G + F+ Sbjct: 72 DGKQIAFASDRNGNFDLFVMPSNGGTAQCLTT-HSASEIPSAFTPDGKYVLFSASIQDPA 130 Query: 367 ------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------- 411 + + + G + ++ + + SG++ ++ +K Sbjct: 131 QSALFPTSAMTELYKVPIGGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHH 189 Query: 412 -GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L + + + Sbjct: 190 TSSVTRDIWMYDTQTGKHTNLTDHAGEDRNAVFTP 224 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 35/246 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 29 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQASYECTPIWSPDGKQIAFASDR 82 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + + LT I ++++PD ++F + + Sbjct: 83 NGNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTE 142 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S I + Sbjct: 143 LYKVPIGGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSVTRDIWM 199 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L + + ++P G+++ F +++G + +YS LN +++ Sbjct: 200 YDTQTGKHTNLTDHAGEDRNAVFTPDGQTVYFLSERNGGS-FNVYSFPLN-TPQSITAVT 257 Query: 435 AYASDP 440 + + P Sbjct: 258 KFKTHP 263 Score = 77.0 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 123/352 (34%), Gaps = 48/352 (13%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK L + ++ V K+ ++PA+ + + + + G+ Sbjct: 319 ATVSPDGKQIALTLRGEVF-VTSADYNTTKQITNTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + ++ + ++ L PS+ P+FSP+ +++A+ Sbjct: 378 WQLYLAKIARKEEANFPNATII-------EEEVLLPSKTVERNYPQFSPDGKELAFI--- 427 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAP-----RFSSNGKR--ALISVQK-DEAMDI 284 ED +R+ +++ + +++ + + +S +GK K D DI Sbjct: 428 -EDRMRLMVVNLET-KKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFIGNKHDPYSDI 485 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q LTN+ + +IS + D + I+F ++R G L M Sbjct: 486 GLVSAQGGEITNLTNSGYTSISPQWVLDGNAILFTTERYGMRAHASWGSLNDAMLVFMNQ 545 Query: 334 NGSDQKRISQDKE-------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + D+ R+S++ A + + + + Sbjct: 546 DAYDKFRLSKEDYELQKELEKEQKEVAGDKTDDKKKEDKADEKKDEKPKDIVVELKGIQD 605 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 RL S + + S +G +L + + L+ +DL + L++ Sbjct: 606 RILRLTPNSSEMGSAVISKNGETLYYFS--AFEDKYDLWKMDLRKKETKLLH 655 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 40 YKGDIYKVPAKGGTATQLTTQAS-YECTPIWSPDGKQIAFASDRNGNFDLFVMPSN--GG 96 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERL 297 + + + + F+ +GK L S + +Y V + TE++ Sbjct: 97 TAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELYKVPIGGGRTEQV 156 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ D Sbjct: 157 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSVTRDIWMYDTQTGKHTNLT-D 212 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG 380 + V++P G + F ++ +G F + + Sbjct: 213 HAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNT 249 >gi|162452827|ref|YP_001615194.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161163409|emb|CAN94714.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1529 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 16/248 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 V+ ++ V DG + + + FSP+ Q++A A++D V + Sbjct: 942 VTASWDGTVRVWKADGTGEPLVLRDHEGRVNSAAFSPDGQRIASASHDR----TVRVWKA 997 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 P + + + A FS +GKR + D ++S D S L Sbjct: 998 DGTGEPLVLRGHDAPVYAVAFSPDGKRIA-TGSYDHTARVWSAD-GSGEPVVLRGHEHEV 1055 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ++SPD Q+V S + V ++NG+ + + + EA + +SP G I Sbjct: 1056 QGVAFSPDGQQLVTASS---DKTARVWKANGTGEPLVLRGHEAPVYSAAFSPDGRRIVTG 1112 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 V K DG+ E L++ +SP G+ + + DT +++S D Sbjct: 1113 SRDKTA---RVWKADGTGEPLVLRGHQDAVWAAFSPDGKRIATASY---DTTVRVWSADG 1166 Query: 424 NGRNETLI 431 G L+ Sbjct: 1167 TGEPLVLL 1174 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 98/280 (35%), Gaps = 17/280 (6%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +T G + + VV+ + + V D + + + FSP+ + Sbjct: 881 LTHPGGVMGASYSPDGKYVVTASLDRNARVWKADMTGEPLVLRGHENGVSSAAFSPDGRW 940 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + A++D V + P + + + + FS +G+R S D + ++ Sbjct: 941 IVTASWDG----TVRVWKADGTGEPLVLRDHEGRVNSAAFSPDGQRIA-SASHDRTVRVW 995 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D + L + ++SPD +I S V ++GS + + + Sbjct: 996 KAD-GTGEPLVLRGHDAPVYAVAFSPDGKRIATGSY---DHTARVWSADGSGEPVVLRGH 1051 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 E +SP G + T S + + G L ++ + + +SP GR ++ Sbjct: 1052 EHEVQGVAFSPDGQQLV-TASSDKTARVWKANGTGEPLVLRGHEAPVYSAAFSPDGRRIV 1110 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + D ++++ D G L D W F Sbjct: 1111 TGSR---DKTARVWKADGTGEPLVL----RGHQDAVWAAF 1143 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 95/249 (38%), Gaps = 14/249 (5%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + S ++ V DG + D ++ FSP+ +++A +YD + Sbjct: 981 QRIASASHDRTVRVWKADGTGEPLVLRGHDAPVYAVAFSPDGKRIATGSYDH----TARV 1036 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 P + + FS +G++ + + D+ ++ + + L Sbjct: 1037 WSADGSGEPVVLRGHEHEVQGVAFSPDGQQLV-TASSDKTARVWKAN-GTGEPLVLRGHE 1094 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SA++SPD +IV R+ +++ ++G+ + + + + + + +SP G I Sbjct: 1095 APVYSAAFSPDGRRIV-TGSRDKTARVWK--ADGTGEPLVLRGHQDAVWA-AFSPDGKRI 1150 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 A + + G LL + + + +S G ++ D +++++ Sbjct: 1151 ATASYD-TTVRVWSADGTGEPLVLLRDHEPIASVAFSHDGGHIV---TAPEDRTARVWNA 1206 Query: 422 DLNGRNETL 430 D G L Sbjct: 1207 DGTGHPVVL 1215 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + +V+ + V + DG + + + FSP+ + V A++D + Sbjct: 1232 KRIVTASWDRTARVWNADGKGEPLILRGHEAQVCSAAFSPDGEHVVTASWDR----TARV 1287 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P + + + + FS +GKR + +V D+ + +++ D + L Sbjct: 1288 WNADGTGDPVVLRGHEAQLYSAAFSPDGKRIV-TVSFDKTVRVWNADGEGEPLI-LRGHE 1345 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + ++SPD +I S + + +++G+ + + E +SP G + Sbjct: 1346 DVVYWVAFSPDGERIATAS---WDKTARLWKADGAGDPVVLRGHEHWVLGVAFSPDGKRV 1402 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRK 409 G + V DG+ E L++ S + + +SP G+ ++ + Sbjct: 1403 VTGSQDGT---VRVWNADGTGEPLVLRGSESPVNSVAFSPDGKRILSASD 1449 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + + ++ V DG + + + FS + + A D + Sbjct: 1148 KRIATASYDTTVRVWSADGTGEPLVLLRDHEPIASVAFSHDGGHIVTAPEDR----TARV 1203 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P + R ++ + FS + KR + + D +++ D + L Sbjct: 1204 WNADGTGHPVVLRGHRDVVHSVAFSPDDKRIV-TASWDRTARVWNADGKGEPLI-LRGHE 1261 Query: 302 FINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SA++SPD +V S DR + V ++G+ + + EA + +SP G Sbjct: 1262 AQVCSAAFSPDGEHVVTASWDRTAR----VWNADGTGDPVVLRGHEAQLYSAAFSPDGKR 1317 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKL 418 I F + V DG E L++ +SP G + + D ++L Sbjct: 1318 IVTVSFDKT---VRVWNADGEGEPLILRGHEDVVYWVAFSPDGERIATASW---DKTARL 1371 Query: 419 YSIDLNGRNETLINTPAYA 437 + D G L + Sbjct: 1372 WKADGAGDPVVLRGHEHWV 1390 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 15/216 (6%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D V + + ++ +S +GK +++ D ++ D+ + Sbjct: 859 DVPRGWAVVARGALHSWVARAVLTHPGGVMGASYSPDGKY-VVTASLDRNARVWKADM-T 916 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L SA++SPD IV + +G +++ ++G+ + + +D E Sbjct: 917 GEPLVLRGHENGVSSAAFSPDGRWIV-TASWDGTVRVWK--ADGTGEPLVLRDHEGRVNS 973 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +SP G IA + G L D+ + A +SP G+ + Sbjct: 974 AAFSPDGQRIASASHD-RTVRVWKADGTGEPLVLRGHDAPVYAVAFSPDGKRIATGSY-- 1030 Query: 412 GDTGSKLYSIDLNGRNETL------INTPAYASDPQ 441 D ++++S D +G L + A++ D Q Sbjct: 1031 -DHTARVWSADGSGEPVVLRGHEHEVQGVAFSPDGQ 1065 Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 31/65 (47%), Gaps = 9/65 (13%) Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL------INTPAYAS 438 +L + ++SP G+ ++ + D ++++ D+ G L +++ A++ Sbjct: 880 VLTHPGGVMGASYSPDGKYVVTASL---DRNARVWKADMTGEPLVLRGHENGVSSAAFSP 936 Query: 439 DPQWV 443 D +W+ Sbjct: 937 DGRWI 941 Score = 38.8 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + VV+G ++ V + DG + + + FSP+ +++ A+ D + L Sbjct: 1400 KRVVTGSQDGTVRVWNADGTGEPLVLRGSESPVNSVAFSPDGKRILSASDDRAVRVWTDL 1459 Query: 242 MDTRIDRAPKR 252 R PK Sbjct: 1460 EPLRGVDDPKL 1470 >gi|298241759|ref|ZP_06965566.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297554813|gb|EFH88677.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 808 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 67/298 (22%) Query: 212 QILFEPRFSPNQQKVAYA-------TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 +++ EP+ SP+ +++A++ T + + ++P ++ + APR Sbjct: 171 RVVGEPQISPDGKRIAFSVLQCDTETNSTSSAIWIVESRGGKTQSPWQVSSGTQHDYAPR 230 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---- 320 +S +G+ ++ IY + L+ +L+N S+ PD + ++ S Sbjct: 231 WSPDGRYLSFLSDREGTPQIYLLPLRGGEARQLSNLPLGVSEYSWRPDGAILLAHSAWKA 290 Query: 321 -DREGK---------------------------EQLYVMQSNGSDQKRISQDKEASYFDP 352 D +G EQL+++ +G+ R++ + Sbjct: 291 ADEQGSGQGEETSYVVMRLASHWDGAGYKHGRHEQLWLLGLDGT-TTRLTSE-PVDLTQV 348 Query: 353 VWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 WSP G I F+ + V+ Q R L E+ Q P+WSP GRS+ Sbjct: 349 CWSPDGSEIVFSANRRADPDLSVSAALWVLTLATGQLRRLTPEEELAQMPSWSPDGRSIA 408 Query: 406 FSRKKDGDTGSKL--YSIDLNG-RNETLINTPAYASD----------------PQWVG 444 + R D S + + + NG T A + PQW Sbjct: 409 YLRSPDQTEASNISPWIVAANGQETPRPAATGAEDINSQMWIIDELRTDYLVAPQWSP 466 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 86/275 (31%), Gaps = 39/275 (14%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD---------DEDILRVYLMDT 244 DGA L + + S ++ +Y + L Sbjct: 273 YSWRPDGA---ILLAHSAWKAADEQGSGQGEETSYVVMRLASHWDGAGYKHGRHEQLWLL 329 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI------YSVDLQSNATERLT 298 +D R+ + + +S +G + S + D+ + + L + RLT Sbjct: 330 GLDGTTTRLTSEPVDLTQVCWSPDGSEIVFSANRRADPDLSVSAALWVLTLATGQLRRLT 389 Query: 299 NTLFINISASYSPDSSQIVFESDRE----GKEQLYVMQSNGSDQKR-------------- 340 + S+SPD I + + +++ +NG + R Sbjct: 390 PEEELAQMPSWSPDGRSIAYLRSPDQTEASNISPWIVAANGQETPRPAATGAEDINSQMW 449 Query: 341 -ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWS 398 I + + P WSP G + + + + + + L +P S Sbjct: 450 IIDELRTDYLVAPQWSPDGQALLVPGQTHGQIHLYRINPTKNTIEQLTRGNGRYLSPQLS 509 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 G+++ R D T ++ +D NG N + + Sbjct: 510 RDGQTIALVR-ADWFTPGDVWGMDGNGENLRKLTS 543 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 175 SRILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 S I+F + + S L V+ +R LTP +++ P +SP+ + +AY Sbjct: 355 SEIVFSANRRADPDLSVSAALWVLTLATGQLRRLTP-EEELAQMPSWSPDGRSIAYLRSP 413 Query: 233 DE---DILRVYLMDTRIDRAPKRIGNFRSMI---------------LAPRFSSNGKRALI 274 D+ + +++ P+ I +AP++S +G+ L+ Sbjct: 414 DQTEASNISPWIVAANGQETPRPAATGAEDINSQMWIIDELRTDYLVAPQWSPDGQALLV 473 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-SDREGKEQLYVMQS 333 Q + +Y ++ N E+LT +S S D I +D ++ M Sbjct: 474 PGQTHGQIHLYRINPTKNTIEQLTRGNGRYLSPQLSRDGQTIALVRADWFTPGDVWGMDG 533 Query: 334 NGSDQKRISQDKEA 347 NG + ++++ +A Sbjct: 534 NGENLRKLTSVNDA 547 >gi|21228491|ref|NP_634413.1| hypothetical protein MM_2389 [Methanosarcina mazei Go1] gi|20906975|gb|AAM32085.1| conserved protein [Methanosarcina mazei Go1] Length = 771 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 31/225 (13%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDD 233 SRI ++S + L ++ DG+N + + + ++P+ +A+ A Y + Sbjct: 33 SRIAYIS---SDHNGSDRLVTLNPDGSNEQIVASFAEISAL--AWAPDSSGMAFNAAYSE 87 Query: 234 EDILRVYLMDTRI--------DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-- 283 + +YL D ++I +++S + +S +G R L S ++ D Sbjct: 88 DGQTGIYLADLESSEPVFLVRGEIRQQIQSWQSEV----WSPDGSRILYSSNENGNSDTN 143 Query: 284 ------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 IYSV+ + +LT+ + S +SPD S+I+F SDR G +++M SNG Sbjct: 144 ENGNSDIYSVNTDGSEKIQLTDDNSKDYSPCFSPDGSKIIFISDRTGHSSIWIMSSNGDK 203 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 ++ +++ E + D W+P G IAF+ S + + D S+ Sbjct: 204 EEELTEGFEGIH-DFSWNPNGQKIAFSSDSNS----YIQEIDYSE 243 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 25/237 (10%) Query: 196 MDRDGANIRYLTPSRDQILFEP----RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 M+ DG++ L F +SP+ ++AY + D R L+ D + + Sbjct: 1 MNSDGSDNFELVKKSYGRNFSGISGCAWSPDGSRIAYISSDHNGSDR--LVTLNPDGSNE 58 Query: 252 RIGNFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERLTNTL------FI 303 +I + I A ++ + + +D IY DL+S+ L Sbjct: 59 QIVASFAEISALAWAPDSSGMAFNAAYSEDGQTGIYLADLESSEPVFLVRGEIRQQIQSW 118 Query: 304 NISASYSPDSSQIVFESDREGKEQ--------LYVMQSNGSDQKRISQDKEASYFDPVWS 355 +SPD S+I++ S+ G +Y + ++GS++ +++ D Y P +S Sbjct: 119 QSE-VWSPDGSRILYSSNENGNSDTNENGNSDIYSVNTDGSEKIQLTDDNSKDY-SPCFS 176 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD 411 P G I F +I +M +G +E L E + +W+P+G+ + FS + Sbjct: 177 PDGSKIIFISDRTGHSSIWIMSSNGDKEEELTEGFEGIHDFSWNPNGQKIAFSSDSN 233 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 21/207 (10%) Query: 255 NFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF + +S +G R S + + + +++ + E++ + + +++PDS Sbjct: 19 NFSGISGC-AWSPDGSRIAYISSDHNGSDRLVTLNPDGSN-EQIVASFAEISALAWAPDS 76 Query: 314 SQIVFES--DREGKEQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDLIAFTKFS 367 S + F + +G+ +Y+ S+ + + + S+ VWSP G I ++ Sbjct: 77 SGMAFNAAYSEDGQTGIYLADLESSEPVFLVRGEIRQQIQSWQSEVWSPDGSRILYSSNE 136 Query: 368 GEKFA--------IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I + DGS++ L +D S +P +SP G +IF + G S + Sbjct: 137 NGNSDTNENGNSDIYSVNTDGSEKIQLTDDNSKDYSPCFSPDGSKIIFISDRTGH--SSI 194 Query: 419 YSIDLNG-RNETLINTPAYASDPQWVG 444 + + NG + E L D W Sbjct: 195 WIMSSNGDKEEELTEGFEGIHDFSWNP 221 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 91/234 (38%), Gaps = 19/234 (8%) Query: 219 FSPNQQKVAYATYDDEDI-------LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +SP+ ++ Y++ ++ + +Y ++T + + + S +P FS +G + Sbjct: 123 WSPDGSRILYSSNENGNSDTNENGNSDIYSVNTDGSEKIQ-LTDDNSKDYSPCFSPDGSK 181 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + I+ + + E LT S++P+ +I F SD Q Sbjct: 182 IIFISDRTGHSSIWIMSSNGDKEEELTEGFEGIHDFSWNPNGQKIAFSSDSNSYIQEIDY 241 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DS 390 +G + + + S D +P+ + + G+ E + V + Sbjct: 242 SESGDEDSQDDSSSDDSDNDTEVNPE-----YLHMEILSPDLNFAASQGTPELITVRITN 296 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 N +P S SG I + +GD +L+ +G +E + + S+ QW+ Sbjct: 297 NSGSPVQS-SGFKFIKANFSNGDPELQLFD---DGTHEDITASDGIFSN-QWIP 345 >gi|269837252|ref|YP_003319480.1| WD40 domain-containing protein beta Propeller [Sphaerobacter thermophilus DSM 20745] gi|269786515|gb|ACZ38658.1| WD40 domain protein beta Propeller [Sphaerobacter thermophilus DSM 20745] Length = 332 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 32/257 (12%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG+ + PR+S + + + D + +++ ++ Sbjct: 59 WDGSTTQITHVGD---ASYPRWSGDGSRFVFV--RTGDAFSDLYIANADGSGMEQLTFYQ 113 Query: 258 S--------------MILAPRFSSNGKRALISVQKDEAMD-IYSVDLQSNATERL--TNT 300 L P +S G ++ + ++ + ++ + Sbjct: 114 PPIQPGTEAYIREAMWALDPVWSRAGDAIAFVSDRNTLKNFLWLMPAPGENPYQIQASTY 173 Query: 301 LFINIS-ASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 N+ +SPD +IVF +D + QL+V+ N + + E +Y DP Sbjct: 174 NGENVEHPDFSPDGQRIVFAQRTTGENDLQRWTQLWVVDLNTEQLFPLVETNEGAY-DPA 232 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 WSP G IA+T +G + I V+ +G L N++APTWSP G + F + G Sbjct: 233 WSPDGRWIAYTGRTGAENDIWVVPAEGGTPIRLTNFGNVRAPTWSPDGSWIAFLQTDGGS 292 Query: 414 TGSKL--YSIDLNGRNE 428 + +S+ +G Sbjct: 293 FKAVAAPFSVGEDGTPR 309 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 86/253 (33%), Gaps = 32/253 (12%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + A IL D + PR+S +G R + D D Sbjct: 36 DRDALGAAPTGRILFAQNGDIHVWDGSTTQITHVGDASYPRWSGDGSRFVFVRTGDAFSD 95 Query: 284 IYSVDLQSNATERLTNT-----LFINI---------SASYSPDSSQIVFESDREG-KEQL 328 +Y + + E+LT +S I F SDR K L Sbjct: 96 LYIANADGSGMEQLTFYQPPIQPGTEAYIREAMWALDPVWSRAGDAIAFVSDRNTLKNFL 155 Query: 329 YVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKF------AIGVMKKDG 380 ++M + G + +I S + P +SP G I F + + + + V+ + Sbjct: 156 WLMPAPGENPYQIQASTYNGENVEHPDFSPDGQRIVFAQRTTGENDLQRWTQLWVVDLNT 215 Query: 381 SQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT------ 433 Q LVE + P WSP GR + ++ + + ++ + G + Sbjct: 216 EQLFPLVETNEGAYDPAWSPDGRWIAYTGRTGAEN--DIWVVPAEGGTPIRLTNFGNVRA 273 Query: 434 PAYASDPQWVGFM 446 P ++ D W+ F+ Sbjct: 274 PTWSPDGSWIAFL 286 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 98/259 (37%), Gaps = 42/259 (16%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI-------------LFEPRFSP 221 SR +FV +G + L + + DG+ + LT + I +P +S Sbjct: 82 SRFVFV----RTGDAFSDLYIANADGSGMEQLTFYQPPIQPGTEAYIREAMWALDPVWSR 137 Query: 222 NQQKVAYATYDD--EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +A+ + + ++ L + + + P FS +G+R + + + Sbjct: 138 AGDAIAFVSDRNTLKNFLWLMPAPGENPYQIQASTYNGENVEHPDFSPDGQRIVFAQRTT 197 Query: 280 E------AMDIYSVDLQSNATERL--TNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++ VDL + L TN + ++SPD I + + ++V+ Sbjct: 198 GENDLQRWTQLWVVDLNTEQLFPLVETNEGAYD--PAWSPDGRWIAYTGRTGAENDIWVV 255 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI----GVMKKDG----SQE 383 + G R++ + P WSP G IAF + G F + +DG + Sbjct: 256 PAEGGTPIRLT--NFGNVRAPTWSPDGSWIAFLQTDGGSFKAVAAPFSVGEDGTPRLGEP 313 Query: 384 RLLVEDSNLQAP---TWSP 399 + L + S + A +W+P Sbjct: 314 QELFKGSGIDATSGLSWAP 332 >gi|312083738|ref|XP_003143987.1| hypothetical protein LOAG_08407 [Loa loa] gi|307760846|gb|EFO20080.1| hypothetical protein LOAG_08407 [Loa loa] Length = 587 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 102/316 (32%), Gaps = 79/316 (25%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-------DILRVYLMDTRIDRAPKRI 253 +NIR LT FS + + + I ++ L + P+RI Sbjct: 24 SNIRQLTFGGQNAEGY--FSFDGNWLTFQAAGIPEYGTSCDQIYKLDLTIPPDKQIPQRI 81 Query: 254 GNFRSMILAPRFSSNGKRALISVQKD---------------------------------- 279 F + + + Sbjct: 82 STGIGACTCSYFYPDNHHMIYAGTFQYANFTSSINIESCPTKTCQTQRAKIDPHLRHLCN 141 Query: 280 --------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 DI+ V+ RLT+T+ + + SPD +IVF S R G ++++M Sbjct: 142 TSYTWDLFPEYDIFKVNEFGTVISRLTDTVGYDAEGAVSPDGRKIVFTSLRSGDPEIWIM 201 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------------------KF 371 S+G++ K+++ D+ P +SP G I F + Sbjct: 202 NSDGTEPKQLT-DELGYDGGPFFSPDGSKIVFRASRPNTSEEIQTYKDLLSYNLVSPLEM 260 Query: 372 AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRK---KDGDTGS-KLYSIDLNGR 426 + M DGS R + + AP + P R +IFS G G+ LY ID G Sbjct: 261 ELYTMNIDGSGLRKVTSLGGSNWAPFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEAGG 320 Query: 427 NETLI--NTPAYASDP 440 N + N + + P Sbjct: 321 NVERVTFNEGGFDAFP 336 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 33/221 (14%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + + + DI +V T I R+ + S +G++ + + + +I+ Sbjct: 144 YTWDLFPEYDIFKVNEFGTVIS----RLTDTVGYDAEGAVSPDGRKIVFTSLRSGDPEIW 199 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-------------------- 325 ++ ++LT+ L + +SPD S+IVF + R Sbjct: 200 IMNSDGTEPKQLTDELGYDGGPFFSPDGSKIVFRASRPNTSEEIQTYKDLLSYNLVSPLE 259 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKD 379 +LY M +GS ++++ +++ P + P I F+ F + ++ + Sbjct: 260 MELYTMNIDGSGLRKVTSLGGSNW-APFYMPDNRHIIFSSNFNETGGHFGAFNLYMIDEA 318 Query: 380 GSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 G + E P + +G+ ++ ++G + S+L Sbjct: 319 GGNVERVTFNEGGFDAFPMFDRTGQRFVWGSSRNGRSRSEL 359 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 100/292 (34%), Gaps = 68/292 (23%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +K+ + + D +++M++ PK++ + P FS +G + + Sbjct: 178 AVSPDGRKIVFTSLRSGDP-EIWIMNSD-GTEPKQLTDELGYDGGPFFSPDGSKIVFRAS 235 Query: 278 KDEAM--------------------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + ++Y++++ + ++T+ N + Y PD+ I+ Sbjct: 236 RPNTSEEIQTYKDLLSYNLVSPLEMELYTMNIDGSGLRKVTSLGGSNWAPFYMPDNRHII 295 Query: 318 FESDRE------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK- 370 F S+ G LY++ G + +R++ ++ P++ G + + Sbjct: 296 FSSNFNETGGHFGAFNLYMIDEAGGNVERVTFNEGGFDAFPMFDRTGQRFVWGSSRNGRS 355 Query: 371 -----------FAIGVMKKDG----------------------SQERLLVEDSNLQAPTW 397 MK ++ + L D A ++ Sbjct: 356 RSELNLFIADWHDTYTMKIGNDIKKENLAIPNLQHTMMKKNYPTKMKRLTNDDINIAGSF 415 Query: 398 SPSGRSLIFSRKKD---GDTGSKLYSIDLN--GRNETLINTP-AYASDPQWV 443 S + +I+ T +++ +DL R ++T A P ++ Sbjct: 416 SFDDKRVIYEGYGTHLYDATCEQVFDLDLTNASRRIRRVSTGIGTARSPVYI 467 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 46/372 (12%), Positives = 102/372 (27%), Gaps = 124/372 (33%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +I+F S + +M+ DG + LT P FSP+ K+ + Sbjct: 185 KIVFTSLRSGDP----EIWIMNSDGTEPKQLTDEL-GYDGGPFFSPDGSKIVFRASRPNT 239 Query: 236 ILRVYLMDTRI------------------DRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 + + +++ + AP + + + + S Sbjct: 240 SEEIQTYKDLLSYNLVSPLEMELYTMNIDGSGLRKVTSLGGSNWAPFYMPDNRHIIFSSN 299 Query: 278 KD------EAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQ--- 327 + A ++Y +D ER+T N + + + V+ S R G+ + Sbjct: 300 FNETGGHFGAFNLYMIDEAGGNVERVTFNEGGFDAFPMFDRTGQRFVWGSSRNGRSRSEL 359 Query: 328 ---------LYVMQSNG----------------------SDQKRISQDKEASYFDPVWSP 356 Y M+ + KR++ D +S Sbjct: 360 NLFIADWHDTYTMKIGNDIKKENLAIPNLQHTMMKKNYPTKMKRLTNDD--INIAGSFSF 417 Query: 357 QGDLIAFTKFSG--------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS-------- 400 + + + + F + + R+ ++P + Sbjct: 418 DDKRVIYEGYGTHLYDATCEQVFDLDLTNASRRIRRVSTGIGTARSPVYISDDNIIIYAS 477 Query: 401 ----------------------------------------GRSLIFSRKKDGDTGSKLYS 420 G+ +IF+ +++GD L+ Sbjct: 478 NILTANRSALNSCPRRACTDARQSWIKEICYDGEASISSDGKHIIFTSRRNGD--PDLWI 535 Query: 421 IDLNGRNETLIN 432 +D++G+N I Sbjct: 536 MDMDGKNAKQIT 547 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 83/272 (30%), Gaps = 44/272 (16%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR--- 238 +L ++D G N+ +T + P F Q+ + + + Sbjct: 301 NETGGHFGAFNLYMIDEAGGNVERVTFNEGGFDAFPMFDRTGQRFVWGSSRNGRSRSELN 360 Query: 239 ---VYLMDTRIDRAP--------------------------KRIGNFRSMILAPRFSSNG 269 DT + KR+ N + +A FS + Sbjct: 361 LFIADWHDTYTMKIGNDIKKENLAIPNLQHTMMKKNYPTKMKRLTNDD-INIAGSFSFDD 419 Query: 270 KRALISVQKDEAMD-----IYSVDL--QSNATERLTNTLFINISASYSPDSSQIVFESD- 321 KR + D ++ +DL S R++ + S Y D + I++ S+ Sbjct: 420 KRVIYEGYGTHLYDATCEQVFDLDLTNASRRIRRVSTGIGTARSPVYISDDNIIIYASNI 479 Query: 322 -REGKEQLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 + L R S KE Y + S G I FT + +M D Sbjct: 480 LTANRSALNSCPRRACTDARQSWIKEICYDGEASISSDGKHIIFTSRRNGDPDLWIMDMD 539 Query: 380 GSQERLLVED-SNLQAPTWSPSGRSLIFSRKK 410 G + + + SP GR ++F + Sbjct: 540 GKNAKQITKAIGYEGGGKISPDGRFIVFHASR 571 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 10/170 (5%) Query: 210 RDQILFEPRFSPNQQKVAY-----ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D I FS + ++V Y YD L T R +R+ +P Sbjct: 406 NDDINIAGSFSFDDKRVIYEGYGTHLYDATCEQVFDLDLTNASRRIRRVSTGIGTARSPV 465 Query: 265 FSSNGKRALISVQ----KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + S+ + + A++ ++A + + + AS S D I+F S Sbjct: 466 YISDDNIIIYASNILTANRSALNSCPRRACTDARQSWIKEICYDGEASISSDGKHIIFTS 525 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 R G L++M +G + K+I++ SP G I F + Sbjct: 526 RRNGDPDLWIMDMDGKNAKQITK-AIGYEGGGKISPDGRFIVFHASRPKS 574 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 5/159 (3%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD---QILFEPRFSPNQQKVAYA 229 F+ + + V D D N P + + + YA Sbjct: 417 FDDKRVIYEGYGTHLYDATCEQVFDLDLTNASRRIRRVSTGIGTARSPVYISDDNIIIYA 476 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALISVQKDEAMDIYSV 287 + R R + + SS+GK + + +++ D++ + Sbjct: 477 SNILTANRSALNSCPRRACTDARQSWIKEICYDGEASISSDGKHIIFTSRRNGDPDLWIM 536 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 D+ +++T + SPD IVF + R Sbjct: 537 DMDGKNAKQITKAIGYEGGGKISPDGRFIVFHASRPKSP 575 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 28/214 (13%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAM-----DIYSVDL----QSNATERLTNTLF 302 R F FS +G IY +DL +R++ + Sbjct: 27 RQLTFGGQNAEGYFSFDGNWLTFQAAGIPEYGTSCDQIYKLDLTIPPDKQIPQRISTGIG 86 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + + PD+ +++ + + K + + + DP + Sbjct: 87 ACTCSYFYPDNHHMIYAGTFQYANFTSSINIESCPTK--TCQTQRAKIDPHL----RHLC 140 Query: 363 FTKFSGEKF---AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 T ++ + F I + + G+ L + SP GR ++F+ + GD ++ Sbjct: 141 NTSYTWDLFPEYDIFKVNEFGTVISRLTDTVGYDAEGAVSPDGRKIVFTSLRSGD--PEI 198 Query: 419 YSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + ++ +G + P ++ D + F Sbjct: 199 WIMNSDGTEPKQLTDELGYDGGPFFSPDGSKIVF 232 >gi|189460182|ref|ZP_03008967.1| hypothetical protein BACCOP_00819 [Bacteroides coprocola DSM 17136] gi|189433043|gb|EDV02028.1| hypothetical protein BACCOP_00819 [Bacteroides coprocola DSM 17136] Length = 1116 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 101/288 (35%), Gaps = 35/288 (12%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ++ + + + L V GA+ L + SP+ +++ + DI Sbjct: 19 LILIFAKTIKYMFMKKLLVTLALGASSFSAFAITPLWLRDVNISPDGKEIVFCY--KGDI 76 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 +V R+ + S P +S +GK+ + + D++ + +R Sbjct: 77 YKVK----AAGGEAVRLTSQDSYESNPVWSPDGKQIAFASDRFGNFDLFIMPADGGTAKR 132 Query: 297 LTNTLFINISASYSPDSSQIVFESD-----------REGKEQLYVMQSNGSDQKRISQDK 345 LT I ++++PD +VF + + G +LY + G +++ Sbjct: 133 LTMNSASEIPSTFTPDGKYVVFSASIQDPASSALFPKSGMTELYKVPVAGGRTQQML--- 189 Query: 346 EASYFDPVWSPQGDLIAF------------TKFSGEKFAIGVMKKDGSQERLLVE-DSNL 392 ++P GD + S + + + L E Sbjct: 190 GTPAEMVCYAPSGDFFLYQDQKGVESEWRKHHTSSITRDVWMYDTKTGKHTNLTEVAGED 249 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + P SP G+ + F +++G + +Y L+ E T ++ ++P Sbjct: 250 RNPVLSPDGKQVYFLSERNGGS-FNVYRFPLDNPKEIQPVT-SFKTNP 295 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 108/286 (37%), Gaps = 34/286 (11%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 F K V +R+L+ D L ++ + + Y D + Sbjct: 272 FNVYRFPLDNPKEIQPVTSFKTNPVRFLSMGNDGTLC---YTYDGE--IYTQPVDGKPKK 326 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 V + R D +F S +GK+ V+ +++ ++ T+++T Sbjct: 327 VAVSLVRDDEELPVSYSFTRGASEAVVSPDGKQVAFIVRG----EVFVTSVEYGTTKQIT 382 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEA 347 +T S+ D+ +V+ S+R GK LY+ + +++ + DK+ Sbjct: 383 HTPEAERGLSFGADNRSLVYSSERNGKRDLYIAKISRKEDLNFPNATLIEEEPLIHDKKL 442 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSG 401 P +SP G +AF + + V+ D + R + + S +WSP G Sbjct: 443 ERDYPQFSPDGKEVAFIEDRN---RLMVVNLDTKKVRQVTDGSTWYTRSGGFDYSWSPDG 499 Query: 402 RS--LIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQWV 443 + L F K D S + + +G+ + L N+ + P+WV Sbjct: 500 KWFTLEFIGNKH-DPYSDIGLVSADGKGQIINLTNSGYTSGSPRWV 544 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G I F I +K G + RL +DS P WSP G+ + F+ + G Sbjct: 61 ISPDGKEIVFCYKGD----IYKVKAAGGEAVRLTSQDSYESNPVWSPDGKQIAFASDRFG 116 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + + + P Sbjct: 117 NF--DLFIMPADGGTAKRLTMNSASEIPS 143 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 25/180 (13%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 GA+ R L S ++ N ++ Y + T I+ P I + + Sbjct: 394 GADNRSLVYSSER---------NGKRDLYIAKISRKEDLNFPNATLIEEEP-LIHDKKLE 443 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-----SYSPDSS 314 P+FS +GK ++ + V+L + ++T+ + S+SPD Sbjct: 444 RDYPQFSPDGKEVAFIEDRN---RLMVVNLDTKKVRQVTDGSTWYTRSGGFDYSWSPDGK 500 Query: 315 QIVFESDREGKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 F + G + + ++ ++G Q + + P W G+ I F Sbjct: 501 W--FTLEFIGNKHDPYSDIGLVSADGKGQIINLTNSGYTSGSPRWVMGGNAILFITERYG 558 Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 110/324 (33%), Gaps = 44/324 (13%) Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 K+ +P + R ++ + + G + I +S +L Sbjct: 379 KQITHTPEAERGLSFGADNRSLVYSSERNGKRDLYIAKISRKEDLNFPNATLI------- 431 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF--RSM 259 L + P+FSP+ ++VA+ +D + L V +DT+ R + RS Sbjct: 432 EEEPLIHDKKLERDYPQFSPDGKEVAF--IEDRNRLMVVNLDTKKVRQVTDGSTWYTRSG 489 Query: 260 ILAPRFSSNGKR--ALISVQK-DEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQ 315 +S +GK K D DI V LTN+ + + S + + Sbjct: 490 GFDYSWSPDGKWFTLEFIGNKHDPYSDIGLVSADGKGQIINLTNSGYTSGSPRWVMGGNA 549 Query: 316 IVFESDREGKEQ-----------LYVMQSNGSDQKRIS-------------QDKEASYFD 351 I+F ++R G + + + D+ R+S Q+K A D Sbjct: 550 ILFITERYGMRNHASWGSLNDVMIAFLNQDAYDKFRLSKEDYELQKELEKEQEKAAQKDD 609 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSR 408 +K V++ +G RL S+L + S G L + Sbjct: 610 KASKKDKKSDDKDAKEEKKVKDIVVETEGIEDRIIRLTPNSSDLASTIISKDGEKLYYLS 669 Query: 409 KKDGDTGSKLYSIDLNGRNETLIN 432 + G ++ +DL R L++ Sbjct: 670 --AFEDGFDMWKMDLRKRETKLLH 691 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 SP G+ ++F K +Y + G L + +Y S+P W Sbjct: 62 SPDGKEIVFCYK------GDIYKVKAAGGEAVRLTSQDSYESNPVWSP 103 >gi|103486587|ref|YP_616148.1| amidohydrolase [Sphingopyxis alaskensis RB2256] gi|98976664|gb|ABF52815.1| amidohydrolase [Sphingopyxis alaskensis RB2256] Length = 1078 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 27/212 (12%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + + +G+ + D IY+V ++ R+ L ++PD Sbjct: 50 IAVDEGSWMNVDVAPDGRTIAFDLLGD----IYTVPIEGGTPTRIAEGLAYEHQPRFAPD 105 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-----FTKFS 367 +I F SDR G + +++M +GSD++++S++ P WSP G + T S Sbjct: 106 GKRIAFVSDRGGGDNVWIMNRDGSDKRQVSKEDFRLLNQPNWSPDGQFLVAKKHFTTSRS 165 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRSLIFSRK--------KDGD 413 + + G LV+ + + P ++P G+S+ ++R D Sbjct: 166 LGTGEVWIYHVSGGAGVPLVKKPDERHQKELGEPIFAPDGKSVYYTRNVTPGPIFEYAQD 225 Query: 414 TGSKLYSIDL----NGRNETLINTPAYASDPQ 441 + L+ I+ +G T+ + A P Sbjct: 226 SNRDLFHIERYSLEDGSISTVASGNGGAVRPT 257 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 113/326 (34%), Gaps = 72/326 (22%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATY 231 RI FVS+ + +M+RDG++ R ++ ++L +P +SP+ Q + + T Sbjct: 108 RIAFVSDRGGGDN----VWIMNRDGSDKRQVSKEDFRLLNQPNWSPDGQFLVAKKHFTTS 163 Query: 232 DDEDILRVYLMDTRIDRAPKRI----GNFRSMILAPRFSSNGKRALIS----------VQ 277 V++ + + + P F+ +GK + Sbjct: 164 RSLGTGEVWIYHVSGGAGVPLVKKPDERHQKELGEPIFAPDGKSVYYTRNVTPGPIFEYA 223 Query: 278 KDEAMDIY---SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 +D D++ L+ + + + + + SPD ++ F + +LYV Sbjct: 224 QDSNRDLFHIERYSLEDGSISTVASGNGGAVRPTPSPDGKRLAFVRREGARSKLYVKDLA 283 Query: 335 GSDQKRI----------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + ++ + Y + W+P I F ++G K + + G + R Sbjct: 284 SGAETKLYDALDQDVQETWAVTGVYPNMAWTPDSRDILF--WAGGK--LRRVGAGGGEAR 339 Query: 385 LL---------------------VEDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYS 420 ++ + + P W SP GRS++F +T KL+ Sbjct: 340 VIPFSIDDDRVIVDAAHPAVEVAPDSFTTKMPRWAEVSPDGRSIVF------ETLGKLWV 393 Query: 421 IDLNGRNETLINTPAYASD---PQWV 443 G + + A+ P W Sbjct: 394 KPATGGTARRLTSAKDAAMEAWPSWS 419 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 25/231 (10%) Query: 196 MDRDGANIRYLTPSRDQILFEPRF---SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + D A+ PR+ SP+ + + + T + +R Sbjct: 350 VIVDAAHPAVEVAPDSFTTKMPRWAEVSPDGRSIVFETLGK------LWVKPATGGTARR 403 Query: 253 IGNFRSMILA--PRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASY 309 + + + + P +S +GK + D +I+ ++ ++T T + Sbjct: 404 LTSAKDAAMEAWPSWSRDGKSIVFVRWTDAGLGEIHVTGASGGSSRKVTATPGHYAEPRF 463 Query: 310 SPDSSQIVFESDREGK---------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SPD IVFE R G +Y + + G +RIS+D P + D Sbjct: 464 SPDDRTIVFEWRRGGGLVSERWGEDPGVYRIAATGGTAERISRDG----AKPQFGAANDR 519 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + + K + DG +R+ + SP GR+L F + D Sbjct: 520 VFMVASTDGKSQLVSTDLDGEDKRVHASGELVSDYEVSPDGRTLAFRQNYD 570 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 111/328 (33%), Gaps = 59/328 (17%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN----IRYLTPSRDQILFEPRFSPNQ 223 D + + + + + G ++ + L EP F+P+ Sbjct: 146 NWSPDGQFLVAKKHFTTSRSLGTGEVWIYHVSGGAGVPLVKKPDERHQKELGEPIFAPDG 205 Query: 224 QKVAYATYDDEDILRVYLMDTRID-----------RAPKRIGNFRSMILAPRFSSNGKRA 272 + V Y + Y D+ D + + + + P S +GKR Sbjct: 206 KSVYYTRNVTPGPIFEYAQDSNRDLFHIERYSLEDGSISTVASGNGGAVRPTPSPDGKRL 265 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINI-----------SASYSPDSSQIVFESD 321 ++ +Y DL S A +L + L ++ + +++PDS I+F + Sbjct: 266 AFVRREGARSKLYVKDLASGAETKLYDALDQDVQETWAVTGVYPNMAWTPDSRDILFWA- 324 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYF-------------------DPVW---SPQGD 359 +L + + G + + I + P W SP G Sbjct: 325 ---GGKLRRVGAGGGEARVIPFSIDDDRVIVDAAHPAVEVAPDSFTTKMPRWAEVSPDGR 381 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQA-PTWSPSGRSLIFSRKKDGDTGS 416 I F + V G R L D+ ++A P+WS G+S++F R D G Sbjct: 382 SIVFETLG----KLWVKPATGGTARRLTSAKDAAMEAWPSWSRDGKSIVFVRWTDAGLGE 437 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 + G + + TP + ++P++ Sbjct: 438 IHVTGASGGSSRKVTATPGHYAEPRFSP 465 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 32/236 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +P+ + +A+ D +Y + P RI + PRF+ +GKR + Sbjct: 63 APDGRTIAFDLLGD-----IYTVPIE-GGTPTRIAEGLAYEHQPRFAPDGKRIAFVSDRG 116 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +++ ++ + +++ F ++ ++SPD +V F + R G ++++ Sbjct: 117 GGDNVWIMNRDGSDKRQVSKEDFRLLNQPNWSPDGQFLVAKKHFTTSRSLGTGEVWIYHV 176 Query: 334 NGSDQKRISQDKEASY----FDPVWSPQGDLIAFTKF-------------SGEKFAIGVM 376 +G + + + + +P+++P G + +T+ + + F I Sbjct: 177 SGGAGVPLVKKPDERHQKELGEPIFAPDGKSVYYTRNVTPGPIFEYAQDSNRDLFHIERY 236 Query: 377 KK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 DGS + + PT SP G+ L F R++ SKLY DL ET + Sbjct: 237 SLEDGSISTVASGNGGAVRPTPSPDGKRLAFVRREGAR--SKLYVKDLASGAETKL 290 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 93/300 (31%), Gaps = 46/300 (15%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 ++G + + + ++ + + + +G + +PRF+P+ +++A+ Sbjct: 53 DEGSWMNVDVAPDGRTIAFDLLGDIYTVPIEGGTPTRIAEGL-AYEHQPRFAPDGKRIAF 111 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAMD 283 + D V++M+ + ++ P +S +G+ + + + + Sbjct: 112 VS-DRGGGDNVWIMNRDGSDKRQVSKEDFRLLNQPNWSPDGQFLVAKKHFTTSRSLGTGE 170 Query: 284 IYSVDLQSNATERLTNTLFIN-----ISASYSPDSSQIVFE--------------SDREG 324 ++ + A L ++PD + + S+R+ Sbjct: 171 VWIYHVSGGAGVPLVKKPDERHQKELGEPIFAPDGKSVYYTRNVTPGPIFEYAQDSNRD- 229 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + ++ P SP G +AF + G + + V E Sbjct: 230 LFHIERYSLEDGSISTVAS-GNGGAVRPTPSPDGKRLAFVRREGARSKLYVKDLASGAET 288 Query: 385 LLVE------------DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 L + W+P R ++F G KL + G +I Sbjct: 289 KLYDALDQDVQETWAVTGVYPNMAWTPDSRDILFWA------GGKLRRVGAGGGEARVIP 342 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 38/251 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--------------- 262 ++P+ + + + + + RV P I + R ++ A Sbjct: 312 AWTPDSRDILF--WAGGKLRRVGAGGGEARVIPFSIDDDRVIVDAAHPAVEVAPDSFTTK 369 Query: 263 -PRF---SSNGKRALISVQKDEAMDIYSVDLQSNATERLTN--TLFINISASYSPDSSQI 316 PR+ S +G+ + ++ RLT+ + S+S D I Sbjct: 370 MPRWAEVSPDGRSIVFET----LGKLWVKPATGGTARRLTSAKDAAMEAWPSWSRDGKSI 425 Query: 317 VFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 VF + G +++V ++G ++++ Y +P +SP I F G Sbjct: 426 VFVRWTDAGLGEIHVTGASGGSSRKVT-ATPGHYAEPRFSPDDRTIVFEWRRGGGLVSER 484 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGRNE 428 +D R+ + S G F D D S+L S DL+G ++ Sbjct: 485 WGEDPGVYRIAATGGTAE--RISRDGAKPQFGAANDRVFMVASTDGKSQLVSTDLDGEDK 542 Query: 429 TLINTPAYASD 439 + + SD Sbjct: 543 RVHASGELVSD 553 >gi|238507612|ref|XP_002385007.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220688526|gb|EED44878.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 647 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 68/362 (18%), Positives = 126/362 (34%), Gaps = 85/362 (23%) Query: 146 SSPASWRKIAHTISD---DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 SS A+ RK H + D+ +G V G + L V + DG+N Sbjct: 15 SSFATARKAMHFAMEQNLDMLPRTHSARGLPAPGKKGVMLMNRIGPSSSELYVANIDGSN 74 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R L + + + FSP+ Q + + + + D +++ S+ A Sbjct: 75 ERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDA 134 Query: 263 PRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINIS---------ASYSPD 312 S + + + +++ +DL++ LTN + S+SPD Sbjct: 135 GVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTKPNGYFRPSWSPD 194 Query: 313 SSQIVFESDREGKEQ---------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 I F SDR + + +YV++ +G+D ++I+ + S P WSP Sbjct: 195 GEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWSPD 254 Query: 358 GDLIAFTKFSGEK--------------FAI----------GVMKKDGSQERL-------- 385 G I F + + E I + +G+ ++ Sbjct: 255 GSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTAD 314 Query: 386 -----------------------LVEDSNLQAPTWSPSGRSLIF--SRKKDGDTGSKLYS 420 V + +++P+WSP G+S+++ S + KLYS Sbjct: 315 NIGYLIKGGSSEGIHYTAESSTGTVINGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYS 374 Query: 421 ID 422 D Sbjct: 375 WD 376 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 25/233 (10%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI------SVQ 277 + D D V+ T+ + + +G + P +S +G+ + Sbjct: 406 SSIVTMRPDGLDQTLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAFGIGAWFQSR 465 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 I + E LTN SYS D +V+ + L +M Sbjct: 466 ATGKGYIARAKADGSYHEILTNGTINAGFPSYSLDGRYLVYRV-WGTEFGLRIMDLTDKS 524 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDS-NLQAP 395 + ++ ++ P +SP G I FT+ + F + ++ DGS ++L N Sbjct: 525 VRVLTTTRD---NLPFYSPDGQRIVFTRRTSYTNFDVCTIRPDGSDLKVLTSSGANDAHA 581 Query: 396 TWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLINTPAY 436 TW+ GR ++++ G +++ ++ +G N+T++ + Sbjct: 582 TWTADGR-ILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADGSNKTILTDSIW 633 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 112/375 (29%), Gaps = 117/375 (31%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + S+ V+ DG + R + L PR+SP+ ++ + E+ + Sbjct: 215 TGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWSPDGSRIIFYEITTENTWDAHRP 274 Query: 243 DTRIDRAPKRI------------------------------------------------- 253 ++ + + Sbjct: 275 ESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAES 334 Query: 254 ---GNFRSMILAPRFSSNGK---------------------------------------- 270 + +P +S +GK Sbjct: 335 STGTVINGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQG 394 Query: 271 RALISVQKDEAMDIYSVDLQSNATE----RLTN----------TLFINISASYSPDSSQI 316 R I+ ++ I ++ LT L S+SPD I Sbjct: 395 RLAITQKQLGNSSIVTMRPDGLDQTLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWI 454 Query: 317 VF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 F +S GK + +++GS + ++ + + P +S G + + + G + Sbjct: 455 AFGIGAWFQSRATGKGYIARAKADGSYHEILT-NGTINAGFPSYSLDGRYLVY-RVWGTE 512 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ET 429 F + +M R+L + P +SP G+ ++F+R + T + +I +G + + Sbjct: 513 FGLRIMDLTDKSVRVLTTTRD-NLPFYSPDGQRIVFTR-RTSYTNFDVCTIRPDGSDLKV 570 Query: 430 LINTPAYASDPQWVG 444 L ++ A + W Sbjct: 571 LTSSGANDAHATWTA 585 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 32/207 (15%) Query: 269 GKRALISVQKDE--AMDIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDR--E 323 GK+ ++ + + + ++Y ++ + +L N + AS+SPD I F S+R + Sbjct: 48 GKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGD 107 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQ 382 G LY +++GS +++ V SP +A+ + + VM + Sbjct: 108 GNSDLYRCRADGSGLEKLVATSSVED-AGVLSPDASKVAWVSTANGYTTNVWVMDLKTGE 166 Query: 383 ERLLVE----------DSNLQAPTWSPSGRSLIFSRKKDGDTGS-------------KLY 419 +R L + P+WSP G + FS ++ + +Y Sbjct: 167 QRNLTNLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVY 226 Query: 420 SIDLNGRNETLINT-PAYA-SDPQWVG 444 I +G + I + ++ P+W Sbjct: 227 VIRPDGTDFRKIASREGWSLGSPRWSP 253 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 214 LFEPRFSPNQQKVAY---ATYDDEDILRVYLMDTRIDR-APKRIGNFRSMILAPRFSSNG 269 F+P +SP+ + +A+ A + + Y+ + D + + N P +S +G Sbjct: 442 AFQPSWSPDGEWIAFGIGAWFQSRATGKGYIARAKADGSYHEILTNGTINAGFPSYSLDG 501 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQL 328 + + V E + +DL + LT T + YSPD +IVF + Sbjct: 502 RYLVYRVWGTEFG-LRIMDLTDKSVRVLTTTR--DNLPFYSPDGQRIVFTRRTSYTNFDV 558 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-------------IGV 375 ++ +GSD K ++ A+ W+ G ++ + G + I V Sbjct: 559 CTIRPDGSDLKVLTSSG-ANDAHATWTADGRILYASGMYGFRDEAAIYDNTFQPYGQIFV 617 Query: 376 MKKDGSQERLLVED 389 M DGS + +L + Sbjct: 618 MNADGSNKTILTDS 631 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 22/154 (14%) Query: 313 SSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSG 368 + V +R G +LYV +GS+++++ + + +SP G I FT + Sbjct: 48 GKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGD 107 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGR 426 + + DGS LV S+++ SP + + +G + ++ +DL G Sbjct: 108 GNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAWVSTANG-YTTNVWVMDLKTGE 166 Query: 427 NETLINT---------------PAYASDPQWVGF 445 L N P+++ D +W+ F Sbjct: 167 QRNLTNLEGVKGDPTKPNGYFRPSWSPDGEWIAF 200 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 19/134 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD ++R LT +RD + P +SP+ Q++ + V + K Sbjct: 515 LRIMDLTDKSVRVLTTTRDNL---PFYSPDGQRIVFTRRTSYTNFDVCTIRPD-GSDLKV 570 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMD--------------IYSVDLQSNATERLT 298 + + + ++++G R L + D I+ ++ + LT Sbjct: 571 LTSSGANDAHATWTADG-RILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADGSNKTILT 629 Query: 299 NTLFINISASYSPD 312 ++++ + A Y P+ Sbjct: 630 DSIWEDSMALYLPN 643 >gi|284116165|ref|ZP_06386711.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] gi|283829531|gb|EFC33885.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp. WGA-A3] Length = 279 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 111/254 (43%), Gaps = 20/254 (7%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI--LRVYLMDTRIDRAPKRI 253 M+ DG+ LT + P++SP+ ++ +++ D +YLMD +R+ Sbjct: 1 MNPDGSEEVRLTHHLAR-DGGPKWSPSGDRIIFSSDRDGAPGDWDLYLMDAD-GSNVQRV 58 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +P +S +GK+ S + IY + ER+ + ++SPD Sbjct: 59 FKKEVARTSPTWSPDGKQIAYSRWEQGKSFIYIASIDGKKEERI----ALGSQPAWSPDG 114 Query: 314 SQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASY-FDPVWSPQGDLIAF-----TKF 366 ++I F ++ ++ K KE ++ WSP+GD +AF + Sbjct: 115 TEIAFIEGAPRDPKRISMLDVRMRKHKFFFPPKEPAWVRHHAWSPEGDRLAFAWYNRIEL 174 Query: 367 SGEKFA---IGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 E F I ++ +DG+ + ++E+ P WSP G +L++S+ D +++ + Sbjct: 175 RQEDFKLETIYIVNRDGTGLQQIIEEGKRAVEPVWSPRGDALLYSQLDKNDM-QQIFKVT 233 Query: 423 LNGRNETLINTPAY 436 L+G ++ P++ Sbjct: 234 LDGGEPVQLSNPSF 247 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 11/164 (6%) Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ---LYVMQSNGSDQKRISQ 343 ++ + RLT+ L + +SP +I+F SDR+G LY+M ++GS+ +R+ Sbjct: 1 MNPDGSEEVRLTHHLARDGGPKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRV-F 59 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 KE + P WSP G IA++++ K I + DG +E + S P WSP G Sbjct: 60 KKEVARTSPTWSPDGKQIAYSRWEQGKSFIYIASIDGKKEERIALGSQ---PAWSPDGTE 116 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNET---LINTPAYASDPQWVG 444 + F D ++ +D+ R PA+ W Sbjct: 117 IAFIEGAPRDP-KRISMLDVRMRKHKFFFPPKEPAWVRHHAWSP 159 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 19/212 (8%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM---DIYSVDLQSNATERLTNTLFI 303 R+ + + P++S +G R + S +D A D+Y +D + +R+ Sbjct: 5 GSEEVRLTHHLARDGGPKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRVFKKEVA 64 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S ++SPD QI + +GK +Y+ +G ++RI+ + P WSP G IAF Sbjct: 65 RTSPTWSPDGKQIAYSRWEQGKSFIYIASIDGKKEERIALGSQ-----PAWSPDGTEIAF 119 Query: 364 TKFSGEKF-AIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRK-----KDGDT 414 + + I ++ + + E + ++ WSP G L F+ + D Sbjct: 120 IEGAPRDPKRISMLDVRMRKHKFFFPPKEPAWVRHHAWSPEGDRLAFAWYNRIELRQEDF 179 Query: 415 GSK-LYSIDLNGRNETLINTPA-YASDPQWVG 444 + +Y ++ +G I A +P W Sbjct: 180 KLETIYIVNRDGTGLQQIIEEGKRAVEPVWSP 211 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 102/260 (39%), Gaps = 28/260 (10%) Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 ++ H ++ D G K + + S L +MD DG+N++ + ++ Sbjct: 10 RLTHHLARD-----GGPKWSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRVFK-KEV 63 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 P +SP+ +++AY+ ++ +Y+ + +RI + P +S +G Sbjct: 64 ARTSPTWSPDGKQIAYSRWEQGKSF-IYIASID-GKKEERIA----LGSQPAWSPDGTEI 117 Query: 273 LISVQKDEAMDIYSV-DLQSNATERL--TNTLFINISASYSPDSSQIVFESDRE------ 323 S+ D++ + ++SP+ ++ F Sbjct: 118 AFIEGAPRDPKRISMLDVRMRKHKFFFPPKEPAWVRHHAWSPEGDRLAFAWYNRIELRQE 177 Query: 324 --GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDG 380 E +Y++ +G+ ++I ++ + + +PVWSP+GD + +++ I + DG Sbjct: 178 DFKLETIYIVNRDGTGLQQIIEEGKRAV-EPVWSPRGDALLYSQLDKNDMQQIFKVTLDG 236 Query: 381 SQERLLVEDSNLQAPTWSPS 400 + L S P ++ Sbjct: 237 GEPVQLSNPS---FPNFARD 253 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 85/243 (34%), Gaps = 23/243 (9%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII- 189 W + I +P W Q + ++ S ++ Sbjct: 23 WSPSGDRIIFSSDRDGAPGDWDLYLMDADGSNVQRVFKKEVARTSPTWSPDGKQIAYSRW 82 Query: 190 ---KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K+ + + DG + +P +SP+ ++A+ D R+ ++D R+ Sbjct: 83 EQGKSFIYIASIDGKKEERIALGS-----QPAWSPDGTEIAFIEGAPRDPKRISMLDVRM 137 Query: 247 DRAP-KRIGNFRSMILAPRFSSNGKRALISV-------QKDEAMD-IYSVDLQSNATERL 297 + + + +S G R + Q+D ++ IY V+ +++ Sbjct: 138 RKHKFFFPPKEPAWVRHHAWSPEGDRLAFAWYNRIELRQEDFKLETIYIVNRDGTGLQQI 197 Query: 298 TNTLFINISASYSPDSSQIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEAS----YFDP 352 + +SP +++ D+ +Q++ + +G + ++S + +FDP Sbjct: 198 IEEGKRAVEPVWSPRGDALLYSQLDKNDMQQIFKVTLDGGEPVQLSNPSFPNFARDWFDP 257 Query: 353 VWS 355 ++ Sbjct: 258 AFA 260 >gi|149918086|ref|ZP_01906579.1| WD40-like Beta Propeller [Plesiocystis pacifica SIR-1] gi|149821091|gb|EDM80497.1| WD40-like Beta Propeller [Plesiocystis pacifica SIR-1] Length = 399 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 53/288 (18%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT--------- 230 + +S + + + MD +G ++ + + F P +++ YA+ Sbjct: 105 IFQSTRGDMGCDQIFTMDLEGRGTTMVSTGKGRTTCA-YFLPKDERIVYASTHAAADDCL 163 Query: 231 ----------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + D +Y+ + PK + S G + + +D Sbjct: 164 PPPDRSKGYVWKLYDEFDIYVANAD-GSDPKVLAASPGYDAEATVSPAGDTIVFTSTRDG 222 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-------------- 326 ++Y +D+ RLTN + A +S D +I++ ++R Sbjct: 223 DPELYVMDIDGQNLRRLTNAPGYDGGAFFSFDGKKIIWRANRPTTADEQAKYTELREEGL 282 Query: 327 ------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVM 376 +L VM ++GS+Q+ I+ + A+ F P W P G+ + F+ F + ++ Sbjct: 283 VRPTALELMVMNADGSEQRVITNNGAAN-FGPFWHPDGERVIFSSNLADPMKRNFDLFII 341 Query: 377 K----KDGS---QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 +G ER+ P ++ G L+F+ + D + Sbjct: 342 DTAPQPEGQWAEPERVTFTKEFDGFPMFTRDGEQLVFASNRHHDKDGE 389 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 28/171 (16%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASY 349 + +LT N A S +++F+S R G +Q++ M G +S K Sbjct: 81 TSLRQLTFG-GENAEAYLSFAEDRLIFQSTRGDMGCDQIFTMDLEGRGTTMVSTGK-GRT 138 Query: 350 FDPVWSPQGDLIAFTKFS--------------------GEKFAIGVMKKDGSQERLLV-E 388 + P+ + I + ++F I V DGS ++L Sbjct: 139 TCAYFLPKDERIVYASTHAAADDCLPPPDRSKGYVWKLYDEFDIYVANADGSDPKVLAAS 198 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYAS 438 T SP+G +++F+ +DGD +LY +D++G+N L N P Y Sbjct: 199 PGYDAEATVSPAGDTIVFTSTRDGD--PELYVMDIDGQNLRRLTNAPGYDG 247 >gi|149919246|ref|ZP_01907729.1| WD40-like Beta Propeller protein [Plesiocystis pacifica SIR-1] gi|149819960|gb|EDM79382.1| WD40-like Beta Propeller protein [Plesiocystis pacifica SIR-1] Length = 1034 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYL-MDTRIDRAPKRIGNFRSM------ILAPRFSSNG 269 P SP+ + VA+ D +L +DT R + +G R P + +G Sbjct: 437 PDVSPDGRTVAFVRNDSGQSRIAFLALDTLEVRELEPLGTGRGSGVELQQAYDPDWHPSG 496 Query: 270 KRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + S +D DIY DL++ TER+T + S +SPD ++F SDR G L Sbjct: 497 TKVAYSAWRDGGWRDIYVHDLETQTTERITADRAQDNSPEWSPDGRWLLFSSDRSGVFNL 556 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 Y + +++S + F+P S G+ IA+ +S + + M D Sbjct: 557 YAFDTESGQTRQVSNVLGGA-FEPAISHDGERIAYVGYSSTGYDLWAMDFD 606 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 26/304 (8%) Query: 141 GKKFFSSPASWRKIAHT-----ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 G++ + ++ AHT DD + + G R + G Sbjct: 309 GRRLTFTASAGSSGAHTRFPVWSPDDQHIYFFDDDGH---RQAGIRRISAEGTRIREGLA 365 Query: 196 MDRDGANIRYLTPSRDQILFEPRF-SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI- 253 + G + + P F PN+ ++ + D + R +R Sbjct: 366 IGNQGKSPDIERVIDMEDNSRPSFVGPNEDQIIFDMVGVHDQRYRWSDLYRWKGPSRRGR 425 Query: 254 --GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS---NATERLTNTLFINIS-- 306 F AP S +G+ I + L + E L + Sbjct: 426 EQLTFGMRARAPDVSPDGRTVAFVRNDSGQSRIAFLALDTLEVRELEPLGTGRGSGVELQ 485 Query: 307 ----ASYSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + P +++ + + R+G + +YV +RI+ D+ A P WSP G + Sbjct: 486 QAYDPDWHPSGTKVAYSAWRDGGWRDIYVHDLETQTTERITADR-AQDNSPEWSPDGRWL 544 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 F+ F + + Q R + P S G + + TG L++ Sbjct: 545 LFSSDRSGVFNLYAFDTESGQTRQVSNVLGGAFEPAISHDGERIAYVGYSS--TGYDLWA 602 Query: 421 IDLN 424 +D + Sbjct: 603 MDFD 606 >gi|312131782|ref|YP_003999122.1| peptidase s41 [Leadbetterella byssophila DSM 17132] gi|311908328|gb|ADQ18769.1| peptidase S41 [Leadbetterella byssophila DSM 17132] Length = 1064 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 28/200 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + + + D +Y V +LT + +SPD QI F SDR Sbjct: 29 PAISPDGSTIVFTYKGD----LYKVPSAGGQATQLTFHEAHDYQPVWSPDGKQIAFASDR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-----------KF 371 G L++M + G + R++ ++P G + F + + Sbjct: 85 YGNFDLFIMNAQGGEATRLTYHSN-DEIPFSFTPDGKSVVFGGVRQDLPEHRQYPTASQP 143 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT----------GSKLYSI 421 + + G + ++ + +S G++LI+ KK G+ +++ Sbjct: 144 ELYSVPVKGGRVNQILSVP-AEYARFSKDGKTLIYHDKKGGENEWRKYHKSSITRDIWTY 202 Query: 422 DL-NGRNETLINTPAYASDP 440 D G++ + N P Sbjct: 203 DTQTGKHTKITNFYGEDRQP 222 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 33/227 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 P SP+ + + D+ +V ++ + P +S +GK+ Sbjct: 25 WARYPAISPDGSTIVFTY--KGDLYKV----PSAGGQATQLTFHEAHDYQPVWSPDGKQI 78 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--------- 323 + + D++ ++ Q RLT I S++PD +VF R+ Sbjct: 79 AFASDRYGNFDLFIMNAQGGEATRLTYHSNDEIPFSFTPDGKSVVFGGVRQDLPEHRQYP 138 Query: 324 --GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----------- 370 + +LY + G +I +S G + + G + Sbjct: 139 TASQPELYSVPVKGGRVNQILSVP---AEYARFSKDGKTLIYHDKKGGENEWRKYHKSSI 195 Query: 371 -FAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTG 415 I + + + P ++ + + + ++ G Sbjct: 196 TRDIWTYDTQTGKHTKITNFYGEDRQPIFTNGDKDIYYLSEESGTFN 242 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 42/328 (12%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +D + K F+ R+ T D ++ E G FN I S + S Sbjct: 202 YDTQTGKHTKITNFYGED---RQPIFTNGDKDIYYLSEESGTFN--IFKTSLADPSKKT- 255 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL-MDTRIDRA 249 + +R+L+ S +L FS + + Y + E +V + + T+ Sbjct: 256 ---AITKLKTHPVRFLSSSNSGLL---AFSYDGE--IYTVKEGESPKKVNITIYTQEISN 307 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + + S NGK + +++ + T+RLTN+ + Sbjct: 308 KDGVSPVNGGVSDFSISPNGKEVAFIARG----EVFVGSVDGKITKRLTNSPEQERFVQF 363 Query: 310 SPDSSQIVFESDREGKEQLYV-----------MQSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD I++ S+R+G+ Q++ S ++K + +K +Y P SP G Sbjct: 364 SPDGKSIIYASERDGRWQIFQTQKLRKEEPLFYASTLIEEKALVSNKNDNYI-PKISPDG 422 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIFSRKKD 411 +AF + + VM S+ L+ L WSP + L+ + K Sbjct: 423 KKLAFIENRRT---LKVMDLASSKTVTLLTPEQLYHMRDGDQYFEWSPDSKWLL-ASYKP 478 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASD 439 + ++ +D G+ + T + +D Sbjct: 479 TMSNGEIVILDAEGKKPMVNITQSGYND 506 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 38/219 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ + + + + KR+ N +FS +GK + + + Sbjct: 322 SISPNGKEVAFIARGE------VFVGSVDGKITKRLTNSPEQERFVQFSPDGKSIIYASE 375 Query: 278 KDEAMDIYSVDLQSNATER---------------LTNTLFINISASYSPDSSQIVFESDR 322 +D I+ Q+ + L + N SPD ++ F +R Sbjct: 376 RDGRWQIF----QTQKLRKEEPLFYASTLIEEKALVSNKNDNYIPKISPDGKKLAFIENR 431 Query: 323 EGKEQLYVMQSNGSD------QKRISQDKEASYFDPVWSPQGDLI-AFTKFSGEKFAIGV 375 L VM S +++ ++ + WSP + A K + I + Sbjct: 432 ---RTLKVMDLASSKTVTLLTPEQLYHMRDGDQYFE-WSPDSKWLLASYKPTMSNGEIVI 487 Query: 376 MKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + +G + + N W+ G+ +++ + G Sbjct: 488 LDAEGKKPMVNITQSGYNDYNAKWANGGKQILWFSNRHG 526 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 32/258 (12%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED---- 235 + L + G + + RFS + + + Y + Sbjct: 132 PEHRQYPTASQPELYSVPVKGGRVNQIL---SVPAEYARFSKDGKTLIYHDKKGGENEWR 188 Query: 236 -------ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 ++ DT+ + K I NF P F++ K ++ +I+ Sbjct: 189 KYHKSSITRDIWTYDTQTGKHTK-ITNFYGEDRQPIFTNGDKDIYYLSEESGTFNIFKTS 247 Query: 289 LQS-NATERLTNTLFINISASYSPDSSQIVFESD------REG----KEQLYVMQSNGSD 337 L + +T + S +S + F D +EG K + + S+ Sbjct: 248 LADPSKKTAITKLKTHPVRFLSSSNSGLLAFSYDGEIYTVKEGESPKKVNITIYTQEISN 307 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APT 396 + +S D SP G +AF + V DG + L + Sbjct: 308 KDGVSPV-NGGVSDFSISPNGKEVAFIARG----EVFVGSVDGKITKRLTNSPEQERFVQ 362 Query: 397 WSPSGRSLIFSRKKDGDT 414 +SP G+S+I++ ++DG Sbjct: 363 FSPDGKSIIYASERDGRW 380 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 19/249 (7%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S + P+ SP+ +K+A+ ++ + T P+++ + R +S Sbjct: 408 SNKNDNYIPKISPDGKKLAFIENRRTLKVMDLASSKTVTLLTPEQLYHMRDGDQYFEWSP 467 Query: 268 NGKRALISVQKDE-AMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGK 325 + K L S + +I +D + +T + + + +A ++ QI++ S+R G Sbjct: 468 DSKWLLASYKPTMSNGEIVILDAEGKKPMVNITQSGYNDYNAKWANGGKQILWFSNRHGM 527 Query: 326 EQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQ-----GDLIAFTKFSGEKFAIG--VMK 377 + S GS + + + S ++ K + + + V+ Sbjct: 528 KD--HANSGGSQADVYTLFLTKEGWEKFNLSKDEVALLKEMEPTKKDTAKTKEVAPIVID 585 Query: 378 KDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-INT 433 DG + RL + S+L S G L + + + + L+S DL + + I Sbjct: 586 WDGLTDRKARLTIHSSSLSDAILSKDGEKLYYLAR--FEKNANLWSTDLRTKETKMEIPL 643 Query: 434 PAYASDPQW 442 +W Sbjct: 644 DGMGGSLEW 652 >gi|270158757|ref|ZP_06187414.1| dipeptidyl peptidase domain protein [Legionella longbeachae D-4968] gi|289166441|ref|YP_003456579.1| prolyl oligopeptidase [Legionella longbeachae NSW150] gi|269990782|gb|EEZ97036.1| dipeptidyl peptidase domain protein [Legionella longbeachae D-4968] gi|288859614|emb|CBJ13584.1| putative prolyl oligopeptidase [Legionella longbeachae NSW150] Length = 664 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 107/312 (34%), Gaps = 51/312 (16%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + V E ++ ++ DG + LT S+ + P++SP+ Q +A+ + +D Sbjct: 54 VYSVEEGKSKTQGIKNIWLVSYDGTIAKQLTYSKKNSNYLPKWSPDGQWIAFLSESGDDK 113 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ------------------- 277 + + ++ R+ N + ++ + K + Sbjct: 114 TPILKLFSKQSGKVIRLTNPHYEVSDFVWAPDSKNIVFIASTAKDESQSENEPLVITRYV 173 Query: 278 ---------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------DR 322 + +Y + +Q E LT+ + + ++SP+ I F + DR Sbjct: 174 FKKDEEGYLGSDRSHLYRISIQKKKVELLTSGPYDEWAPAWSPNGKYIAFVTKRGKDPDR 233 Query: 323 EGKEQLY-VMQSNGSDQKRISQDKEAS-----YFDPVWSPQGDLIAFTKFSGEKF----- 371 +Y + ++GS +++ P WS IA+ + + + Sbjct: 234 NFNSDIYLISPASGSKAIQLTHFPGTDLDQEWDSVPSWSSDNSQIAYIRSANSQAMYYDY 293 Query: 372 ---AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + V+ QER++ D P WS G+ + + L ++D++ Sbjct: 294 APTQLAVVDVATGQERVVGPVDQWFTDPQWSEDGKIIYVLMETS--RNIHLSAVDVHTGK 351 Query: 428 ETLINTPAYASD 439 + + + Sbjct: 352 VQRLTQGSRVDE 363 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 56/289 (19%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 R + + EP S N V Y+ + + I ++L+ A + + ++ P++ Sbjct: 37 RIKTISEPDLSKNGDWVVYSVEEGKSKTQGIKNIWLVSYDGTIAKQLTYSKKNSNYLPKW 96 Query: 266 SSNGKRALI-SVQKDEAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFES--- 320 S +G+ S D+ I + QS RLTN + ++PDS IVF + Sbjct: 97 SPDGQWIAFLSESGDDKTPILKLFSKQSGKVIRLTNPHYEVSDFVWAPDSKNIVFIASTA 156 Query: 321 --------------------DREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 D EG + LY + + ++ + P WS Sbjct: 157 KDESQSENEPLVITRYVFKKDEEGYLGSDRSHLYRISIQKKKVELLTS-GPYDEWAPAWS 215 Query: 356 PQGDLIAFTKFSGE------KFAIGVMKK-DGSQERLLV-------EDSNLQAPTWSPSG 401 P G IAF G+ I ++ GS+ L + P+WS Sbjct: 216 PNGKYIAFVTKRGKDPDRNFNSDIYLISPASGSKAIQLTHFPGTDLDQEWDSVPSWSSDN 275 Query: 402 RSLIFSRKKDGDTG------SKLYSIDLNGRNETLI-NTPAYASDPQWV 443 + + R + ++L +D+ E ++ + +DPQW Sbjct: 276 SQIAYIRSANSQAMYYDYAPTQLAVVDVATGQERVVGPVDQWFTDPQWS 324 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 35/174 (20%) Query: 306 SASYSPDSSQIVFE-----SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S + +V+ S +G + ++++ +G+ K+++ K+ S + P WSP G Sbjct: 43 EPDLSKNGDWVVYSVEEGKSKTQGIKNIWLVSYDGTIAKQLTYSKKNSNYLPKWSPDGQW 102 Query: 361 IAFTKFSGEKFAIGV---MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD------ 411 IAF SG+ + K+ G RL + W+P ++++F Sbjct: 103 IAFLSESGDDKTPILKLFSKQSGKVIRLTNPHYEVSDFVWAPDSKNIVFIASTAKDESQS 162 Query: 412 --------------------GDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 G S LY I + + E L + P P W Sbjct: 163 ENEPLVITRYVFKKDEEGYLGSDRSHLYRISIQKKKVELLTSGPYDEWAPAWSP 216 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 36/278 (12%) Query: 176 RILFVSESVVSGIIKNS---LCVMDRDGANIRYLTPSRD-----QILFEPRFSPNQQKVA 227 I FV++ + + G+ LT + P +S + ++A Sbjct: 220 YIAFVTKRGKDPDRNFNSDIYLISPASGSKAIQLTHFPGTDLDQEWDSVPSWSSDNSQIA 279 Query: 228 YATYDDEDILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 Y + + T+ + +G P++S +GK + ++ Sbjct: 280 YIRSANSQAMYYDYAPTQLAVVDVATGQERVVGPVDQWFTDPQWSEDGKIIYVLMETSRN 339 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 + + +VD+ + +RLT ++ S +P ++ SD + +L+ ++ NG +++ Sbjct: 340 IHLSAVDVHTGKVQRLTQGSRVDEYFSVAP-QKIVLVSSDDQHPSELFALEKNG--LRQL 396 Query: 342 SQDKEASYFDPVWSP---------QGDLIAF-----TKFSGEKFAIGVMKKDGSQERLLV 387 + + + + P G I + +G++ G Sbjct: 397 THHNQKLLEEVHFVPVEDIEFDSFDGTRIEGLLVKPANYKPGNRYLGILNLHGGPVDQFT 456 Query: 388 EDSNLQAPTWSPSGRSLIF-----SRKKDGDTGSKLYS 420 + N + + G +I S + + +Y+ Sbjct: 457 HEFNFEWQWLAAQGYVVIAPNPRGSSGRGFNFAKAIYA 494 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTG---SKLYSIDLNGRNETLIN--------TPAYASD 439 + P S +G +++S ++ ++ + +G + P ++ D Sbjct: 40 TISEPDLSKNGDWVVYSVEEGKSKTQGIKNIWLVSYDGTIAKQLTYSKKNSNYLPKWSPD 99 Query: 440 PQWVGFM 446 QW+ F+ Sbjct: 100 GQWIAFL 106 >gi|322436470|ref|YP_004218682.1| peptidase S41 [Acidobacterium sp. MP5ACTX9] gi|321164197|gb|ADW69902.1| peptidase S41 [Acidobacterium sp. MP5ACTX9] Length = 1087 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 38/248 (15%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 L +P SP+ ++A+ + DI V + + P +S +GK+ Sbjct: 23 PSLSDPTISPDGHEIAFVS--GGDIWSV----PAAGGEAHLLVTHPATESRPLYSPDGKK 76 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGKEQL 328 + +IY + L S +RLT + + ++S D I F S D G+ + Sbjct: 77 LAFISTRTGNGNIYILTLASGQLQRLTYSDVPDRLDAWSKDGQWIYFTSAIDDVAGQGDI 136 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--------FSGEKFAI-----GV 375 + +++ G ++ ++ + F+ SP G IAF + I + Sbjct: 137 FRVRTTGGTPLEVTHERYMNEFESSPSPDGSQIAFMAKGISASQWWRNGHAHIDETELWL 196 Query: 376 MKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 S +LL DS P WS G+SL + G E + T Sbjct: 197 KPVGDSAPYKKLLPADSKHAWPMWSADGKSLFYMSDASGA--------------ENIWET 242 Query: 434 PAYASDPQ 441 PA ++ P+ Sbjct: 243 PAGSASPK 250 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 27/208 (12%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R + P S +G DI+SV L YSPD ++ Sbjct: 22 RPSLSDPTISPDGHEIAFVS----GGDIWSVPAAGGEAHLLVTHPATESRPLYSPDGKKL 77 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---EKFAI 373 F S R G +Y++ +R++ + WS G I FT + I Sbjct: 78 AFISTRTGNGNIYILTLASGQLQRLTY-SDVPDRLDAWSKDGQWIYFTSAIDDVAGQGDI 136 Query: 374 GVMKKDGSQERLLVEDSNLQ----APTWSPSGRSLIFSRK--------KDGDT---GSKL 418 ++ G + + + +P SP G + F K ++G ++L Sbjct: 137 FRVRTTGGTPLEVTHERYMNEFESSP--SPDGSQIAFMAKGISASQWWRNGHAHIDETEL 194 Query: 419 YS--IDLNGRNETLINTPAYASDPQWVG 444 + + + + L+ + + P W Sbjct: 195 WLKPVGDSAPYKKLLPADSKHAWPMWSA 222 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 26/294 (8%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + ++ + ++ + + + G +T R FE SP+ ++A+ Sbjct: 117 DGQWIYFTSAIDDVAGQGDIFRVRTTGGTPLEVTHERYMNEFESSPSPDGSQIAFMAKGI 176 Query: 234 E------------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 D ++L K++ S P +S++GK A Sbjct: 177 SASQWWRNGHAHIDETELWLKPVGDSAPYKKLLPADSKHAWPMWSADGKSLFYMSDASGA 236 Query: 282 MDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESD--------REGKEQLYVMQ 332 +I+ S + + LT+ + S IVFE + GK + ++ Sbjct: 237 ENIWETPAGSASPKALTHFKEGRVLWPSIGDSGHTIVFERNFAIWRMDTASGKAEPVRIE 296 Query: 333 SNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 GS I++ E S+ SP G + + + K G +R+ E + Sbjct: 297 LRGSAGTPGITRVTETSFRTLALSPDGKKVVV--LAHGQLFAASAKDGGDGQRVKSEAVS 354 Query: 392 LQAPTWSPSGRSLIFSRKK-DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + P WSP S+ + ++ DG +L+S D + L P + P W Sbjct: 355 MSDPQWSPDSTSVAYIAERMDGSHQLELFSFDTL-KARPLTIIPGESQAPSWSP 407 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 13/191 (6%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG + + + S + +P++SP+ VAY + ++ L +A + + Sbjct: 341 DGGDGQRV-KSEAVSMSDPQWSPDSTSVAYIAERMDGSHQLELFSFDTLKA-RPLTIIPG 398 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT-------ERLTNTLFINISASYSP 311 AP +S NGK + I D ++ A + +T+ S ++SP Sbjct: 399 ESQAPSWSPNGKLLAYVHDNKDLHVITMPDPKAKAPSTVPLPDKIITSGALAQPSLAWSP 458 Query: 312 DSSQIVFES-DREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAF-TKFS 367 D+ + F S D L V+Q+ G + I+ + E +Y WSP G I F T Sbjct: 459 DNQWVAFTSVDARSFRNLNVIQAAGGEPHPITFLGNGETAYSRIAWSPDGKYILFETAQR 518 Query: 368 GEKFAIGVMKK 378 E I + Sbjct: 519 SENIQIARVDL 529 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 24/221 (10%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +KV + +++ + +R+ + + P++S + + Sbjct: 318 ALSPDGKKVVVLAHG-----QLFAASAKDGGDGQRVKSEAVSMSDPQWSPDSTSVAYIAE 372 Query: 278 K-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + D + + + LT + + S+SP+ + + D + L+V+ Sbjct: 373 RMDGSHQLELFSFDTLKARPLTIIPGESQAPSWSPNGKLLAYVHD---NKDLHVITMPDP 429 Query: 337 DQKRISQD-------KEASYFDP--VWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLL 386 K S + P WSP +AFT F + V++ G + + Sbjct: 430 KAKAPSTVPLPDKIITSGALAQPSLAWSPDNQWVAFTSVDARSFRNLNVIQAAGGEPHPI 489 Query: 387 VEDSNLQAP----TWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 N + WSP G+ ++F + + ++ +DL Sbjct: 490 TFLGNGETAYSRIAWSPDGKYILFETAQRSE-NIQIARVDL 529 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 93/270 (34%), Gaps = 30/270 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G L P +SP+ +K+A+ + + +Y++ + + Sbjct: 44 DIWSVPAAGGEAHLLVT-HPATESRPLYSPDGKKLAFISTRTGNG-NIYILTLASGQL-Q 100 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKD---EAMDIYSVDLQSNATERLTNTLF-INISA 307 R+ +S +G+ + D DI+ V +T+ + + Sbjct: 101 RLTYSDVPDRLDAWSKDGQWIYFTSAIDDVAGQGDIFRVRTTGGTPLEVTHERYMNEFES 160 Query: 308 SYSPDSSQIVF--------ESDREGKEQL-----YVMQSNGSDQKRISQDKEASYFDPVW 354 S SPD SQI F + R G + ++ S + ++ + P+W Sbjct: 161 SPSPDGSQIAFMAKGISASQWWRNGHAHIDETELWLKPVGDSAPYKKLLPADSKHAWPMW 220 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDG 412 S G + + + I + + L + + P+ SG +++F R Sbjct: 221 SADGKSLFYMSDASGAENIWETPAGSASPKALTHFKEGRVLWPSIGDSGHTIVFERN--- 277 Query: 413 DTGSKLYSID-LNGRNET-LINTPAYASDP 440 ++ +D +G+ E I A P Sbjct: 278 ---FAIWRMDTASGKAEPVRIELRGSAGTP 304 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 57/355 (16%), Positives = 107/355 (30%), Gaps = 54/355 (15%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V Q+ R + +S ++ + +S + + G + Sbjct: 328 VLAHGQLFAASAKDGGDGQRVKSEAVS------MSDPQWSPDSTSVAYIAERMDGSHQLE 381 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP-- 250 L D A + P Q P +SPN + +AY +D++D+ + + D + Sbjct: 382 LFSFDTLKARPLTIIPGESQA---PSWSPNGKLLAYV-HDNKDLHVITMPDPKAKAPSTV 437 Query: 251 ----KRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLT---NTLF 302 K I + + +S + + SV ++ + +T N Sbjct: 438 PLPDKIITSGALAQPSLAWSPDNQWVAFTSVDARSFRNLNVIQAAGGEPHPITFLGNGET 497 Query: 303 INISASYSPDSSQIVF-ESDREGKEQLYVMQS----------NGSDQKRISQDKEASYFD 351 ++SPD I+F + R Q+ + D R ++ Sbjct: 498 AYSRIAWSPDGKYILFETAQRSENIQIARVDLLPHVPRFREDEFRDLFRTTRPPGTPATP 557 Query: 352 PVW-----------------SPQG-DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +P A K E I V + + +L + + Sbjct: 558 ATPTTPAETPASEPKADATDTPDKPKPAAPEKKQPEPVKI-VFEGIRRRLTILPLGLSAE 616 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN----ETLINTPAYASDPQWVG 444 P SP G+ L+FS + YS+D R L +TP + Sbjct: 617 RPVISPDGKVLLFSAETARQESLYTYSLDELAREPAVARQLTSTPGSKGAYAFSP 671 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 14/106 (13%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIF 406 S DP SP G IAF I + G + LL + P +SP G+ L F Sbjct: 24 SLSDPTISPDGHEIAFVSGGD----IWSVPAAGGEAHLLVTHPATESRPLYSPDGKKLAF 79 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + G +Y + L + A++ D QW+ F Sbjct: 80 ISTRTG--NGNIYILTLASGQLQRLTYSDVPDRLDAWSKDGQWIYF 123 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 83/254 (32%), Gaps = 29/254 (11%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR--FSPN 222 ++ ++ +V+ + V +L V+ G +T + R +SP+ Sbjct: 448 ALAQPSLAWSPDNQWVAFTSVDARSFRNLNVIQAAGGEPHPITFLGNGETAYSRIAWSPD 507 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + T + +++ +D PRF + R L + Sbjct: 508 GKYILFETAQRSENIQIARVDLLPHV--------------PRFREDEFRDLFRTTRPPGT 553 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 + A + +PD + + + + + + G ++R++ Sbjct: 554 PATPATPTTPAETPASEPKADATD---TPDKPKPA--APEKKQPEPVKIVFEG-IRRRLT 607 Query: 343 QDKEA-SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-----SQERLLVED-SNLQAP 395 S PV SP G ++ F+ + + ++ D + R L + A Sbjct: 608 ILPLGLSAERPVISPDGKVLLFSAETARQESLYTYSLDELAREPAVARQLTSTPGSKGAY 667 Query: 396 TWSPSGRSLIFSRK 409 +SP + + F Sbjct: 668 AFSPDSKEVFFLEN 681 >gi|150007868|ref|YP_001302611.1| putative peptidase/protease family protein [Parabacteroides distasonis ATCC 8503] gi|149936292|gb|ABR42989.1| putative peptidase/protease family protein [Parabacteroides distasonis ATCC 8503] Length = 1080 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 122/337 (36%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D + K R T ++ G + F + S Sbjct: 196 DIWMYDTQTGKH---TNLTDHAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNTPQS 252 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 V +R+L+ DQ L ++ + + Y + +V + R Sbjct: 253 IT-----AVTKFKTHPVRFLSTGSDQTLC---YTYDGE--IYTQRPGSNPQKVRIDLIRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ N + S +GK+ ++++ +++ N T+++T+T Sbjct: 303 DQEQICDLNSSKGATSATVSPDGKQIALTLRG----EVFVTSADYNTTKQITHTPAAETG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWS 355 +SPD+ + + S+R G QLY+ + +++ + K P +S Sbjct: 359 VCFSPDNRTLAYASERGGNWQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + ++ + V+ + + R + + S + +WSP G+ L F Sbjct: 419 PDGKELAFIE---DRMRLMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFI 475 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 K D S + + G T + Y S PQWV Sbjct: 476 GNKH-DPYSDIGLVSAQGGEITNLTNSGYTSTSPQWV 511 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 35/246 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 29 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQASYECTPIWSPDGKQIAFASDR 82 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + + LT I ++++PD ++F + + Sbjct: 83 NGNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTE 142 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S I + Sbjct: 143 LYKVPVGGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSVTRDIWM 199 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L + + ++P G+++ F +++G + +YS LN +++ Sbjct: 200 YDTQTGKHTNLTDHAGEDRNAVFTPDGQTVYFLSERNGGS-FNVYSFPLN-TPQSITAVT 257 Query: 435 AYASDP 440 + + P Sbjct: 258 KFKTHP 263 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 34/215 (15%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S + P + S +G + D IY V + +LT + +SP Sbjct: 16 SYAVTPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSP 71 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 D QI F SDR G L+VM SNG + ++ AS ++P G + F+ Sbjct: 72 DGKQIAFASDRNGNFDLFVMPSNGGTAQCLTT-HSASEIPSAFTPDGKYVLFSASIQDPA 130 Query: 367 ------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------- 411 + + + G + ++ + + SG++ ++ +K Sbjct: 131 QSALFPTSAMTELYKVPVGGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHH 189 Query: 412 -GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L + + + Sbjct: 190 TSSVTRDIWMYDTQTGKHTNLTDHAGEDRNAVFTP 224 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 40 YKGDIYKVPAKGGTATQLTTQAS-YECTPIWSPDGKQIAFASDRNGNFDLFVMPSN--GG 96 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERL 297 + + + + F+ +GK L S + +Y V + TE++ Sbjct: 97 TAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELYKVPVGGGRTEQV 156 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ D Sbjct: 157 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSVTRDIWMYDTQTGKHTNLT-D 212 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG 380 + V++P G + F ++ +G F + + Sbjct: 213 HAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNT 249 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 53/352 (15%), Positives = 120/352 (34%), Gaps = 48/352 (13%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK L + ++ V K+ +PA+ + + + + G+ Sbjct: 319 ATVSPDGKQIALTLRGEVF-VTSADYNTTKQITHTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + ++ + ++ L PS+ P+FSP+ +++A+ Sbjct: 378 WQLYLAKIARKEEANFPNATII-------EEEVLLPSKTVERNYPQFSPDGKELAFI--- 427 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAP-----RFSSNGKR--ALISVQK-DEAMDI 284 ED +R+ +++ + +++ + + +S +GK K D DI Sbjct: 428 -EDRMRLMVVNLET-KKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFIGNKHDPYSDI 485 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q LTN+ + + S + D + I+F ++R G L M Sbjct: 486 GLVSAQGGEITNLTNSGYTSTSPQWVLDGNAILFTTERYGMRAHASWGSLNDAMLVFMNQ 545 Query: 334 NGSDQKRISQDKE-------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + D+ R+S++ + + + + Sbjct: 546 DAYDKFRLSKEDYELQKELEKEQKEVTGDKTDDKKKEDKADEKKDEMPKDIVVELKGIQD 605 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 RL S + + S +G +L + + L+ +DL + L++ Sbjct: 606 RILRLTPNSSEMGSAVISKNGETLYYFS--AFEDKYDLWKMDLRKKETKLLH 655 >gi|126650236|ref|ZP_01722464.1| YuxL [Bacillus sp. B14905] gi|126592886|gb|EAZ86868.1| YuxL [Bacillus sp. B14905] Length = 662 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 54/255 (21%) Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATE 295 M T+ P+ + + +S + P+ S +G + + D +++ ++L+ + Sbjct: 1 MTTKQGIQPEDLYHLKS-VADPQLSPDGTEVVYVETRIDEKKKDYVSNLFYLNLKDKRPQ 59 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + T S +SPD SQI F S R GK Q++V+ G + K+++ K + PVWS Sbjct: 60 QWTYGDDRTSSPVWSPDGSQIAFSSTRSGKPQIFVLSKTGGEAKQVTYCKNGA-STPVWS 118 Query: 356 PQGDLIAFTKFSG---------------------------------EKF-------AIGV 375 P G+ IAF+ G F I + Sbjct: 119 PCGEKIAFSVMLGKDETILDKAEDDKKEEKELKPLEIDKMKHKSDAGGFMDMDQHTHIAI 178 Query: 376 MKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETL 430 + + + E + + TWSP+G L + + D + +Y DL + Sbjct: 179 VDLKSGDLKQVTEGNEDFHLSTWSPNGSYLTYLADQAEDLDFSFNADIYLFDLETKQSRK 238 Query: 431 INTP-AYASDPQWVG 444 + W Sbjct: 239 VTEGIGSYYQTSWSP 253 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 55/263 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + +P+ SP+ +V Y ++ + Y+ + D+ P++ +P +S +G Sbjct: 18 VADPQLSPDGTEVVYVETRIDEKKKDYVSNLFYLNLKDKRPQQWTYGDDRTSSPVWSPDG 77 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------- 319 + S + I+ + +++T + +SP +I F Sbjct: 78 SQIAFSSTRSGKPQIFVLSKTGGEAKQVTYCKNGASTPVWSPCGEKIAFSVMLGKDETIL 137 Query: 320 ------------------------SDREG------KEQLYVMQSNGSDQKRISQDKEASY 349 SD G + ++ D K++++ E + Sbjct: 138 DKAEDDKKEEKELKPLEIDKMKHKSDAGGFMDMDQHTHIAIVDLKSGDLKQVTEGNE-DF 196 Query: 350 FDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGR 402 WSP G + + E I + + Q R + E + +WSP+ R Sbjct: 197 HLSTWSPNGSYLTYLADQAEDLDFSFNADIYLFDLETKQSRKVTEGIGSYYQTSWSPNSR 256 Query: 403 SLIFS---RKKDGDTGSKLYSID 422 L F R+ + T +KL+ D Sbjct: 257 FLSFVGGKREFENATQAKLWIYD 279 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 60/395 (15%), Positives = 117/395 (29%), Gaps = 90/395 (22%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 ++ +G + + VE R D K + + + + + D + G Sbjct: 22 QLSPDGTEVVYVETR-IDEKKKDYVSNLFYLNLKDKRPQQWTYGDDRTSSPVWSPDG--- 77 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--- 231 S+I F S K + V+ + G + +T ++ P +SP +K+A++ Sbjct: 78 SQIAFSSTR----SGKPQIFVLSKTGGEAKQVTYCKNG-ASTPVWSPCGEKIAFSVMLGK 132 Query: 232 ------------------------------------DDEDILRVYLMDTRIDRAPKRIGN 255 D + + ++D + K++ Sbjct: 133 DETILDKAEDDKKEEKELKPLEIDKMKHKSDAGGFMDMDQHTHIAIVDLKSGDL-KQVTE 191 Query: 256 FRSMILAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +S NG + DIY DL++ + ++T + S+ Sbjct: 192 GNEDFHLSTWSPNGSYLTYLADQAEDLDFSFNADIYLFDLETKQSRKVTEGIGSYYQTSW 251 Query: 310 SPDSSQIVFESDREGKEQ--------LYVMQSNGSDQKRISQDKEASYFDPV-------- 353 SP+S F S GK + L++ + + + +A D V Sbjct: 252 SPNSR---FLSFVGGKREFENATQAKLWIYDMEQNLLNCATSEFDAPVGDYVIGDFLQGV 308 Query: 354 ------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR----S 403 W F AI DG + +D + +S + Sbjct: 309 AAPSVQWMNDNHSFYFQVTDHGNAAIYFGNVDGEIYPAIHDDQYVYG--FSLDAQNDQAV 366 Query: 404 LIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYA 437 + S + LY ++L G E L Sbjct: 367 VAISTTTN---PGDLYYVNLKTGEKERLTTVNEDV 398 >gi|320104802|ref|YP_004180393.1| peptidase S41 [Isosphaera pallida ATCC 43644] gi|319752084|gb|ADV63844.1| peptidase S41 [Isosphaera pallida ATCC 43644] Length = 1186 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 128/296 (43%), Gaps = 27/296 (9%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 +DD + G FN + + + V + +++ ++R+ + S D + Sbjct: 269 FADDTLAFNSDRSGTFNLYKVDPATNEVVPLTRSTTW-------DVRWPSQSNDGRIV-- 319 Query: 218 RFSPNQQ-KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + + ++ + ++ L + + D + R P+R+ + +I S G+RAL + Sbjct: 320 -YEFDGTLRIVTVSSGEDRGLTIEVPDDGLTRRPERV-SAAGLIEDFGLSPKGERALFAA 377 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + ++++V +++ T L N+ ++ + +SPD S I + SD G+E+L+++ +G Sbjct: 378 RG----EVFTVPIENGTTRALVNSSKVHAKAPIWSPDGSTIAYLSDASGEEELWLVAQDG 433 Query: 336 S-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 S ++++ A F P WSP G IAF G + V + ++ Sbjct: 434 SKPPRQLTHGGRAMRFAPRWSPDGSAIAFVDKDG---KLLVADVATGNLVEAADSPEERS 490 Query: 395 P--TWSPSGRSLIFSRKK-DGDTGSKLYSIDLNGRN---ETLINTPAYASDPQWVG 444 WSP R L FS + +G+ ++S D + + + A +P W Sbjct: 491 TDHVWSPDSRFLAFSLPRPNGNRALFIWSRDAENPEAALQQITDEFFDAFEPAWDP 546 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 95/266 (35%), Gaps = 38/266 (14%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G R L PS + PR S + +VA V ++ A M Sbjct: 18 GTATRGLLPSATAPIPTPRVSDRRTRVA--------PTGVAILGALAALAATPALGQTRM 69 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 + P G + S D ++SV Q RLT + + +SPD S I F Sbjct: 70 LRYPDLH--GDTVVFSYAGD----LWSVSDQGGRATRLTAHPGLELFPKFSPDGSMIAFT 123 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDK---------EASYFDPVWSPQGDLIAFTKFSGE- 369 +G EQ+YV+ + G K+++ + W+P G I F Sbjct: 124 GQYDGDEQVYVIPATGGVPKQLTYYPARGPLPARWGYDHQVMGWTPDGKSILFRSLRDSW 183 Query: 370 ---KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSK 417 + + + G +LL S+ A T+SP G L +S ++ G Sbjct: 184 TIAEGRLYTVPVGGGPAKLLPPPSS-GAATFSPDGSRLFYSPLARDFRTWKRYQGGWAQN 242 Query: 418 LYSIDLNG-RNETLINTPAYASDPQW 442 L+ IDL + + +T DP W Sbjct: 243 LFIIDLKTLERKPIAHTVRTERDPMW 268 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 16/237 (6%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +V SG + + DG R S ++ + SP ++ +A + V+ + Sbjct: 330 TVSSGEDRGLTIEVPDDGLTRRPERVSAAGLIEDFGLSPKGERALFAARGE-----VFTV 384 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT-ERLTNT- 300 + + + AP +S +G +++ V + +LT+ Sbjct: 385 PIENGTTRALVNSSKVHAKAPIWSPDGSTIAYLSDASGEEELWLVAQDGSKPPRQLTHGG 444 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + + +SPD S I F D++GK L V + + E D VWSP Sbjct: 445 RAMRFAPRWSPDGSAIAFV-DKDGK--LLVADVATGNLVEAADSPEERSTDHVWSPDSRF 501 Query: 361 IAFT-KFSGEKFAIGVMKKDGSQE-----RLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 +AF+ A+ + +D ++ E + P W P G L + D Sbjct: 502 LAFSLPRPNGNRALFIWSRDAENPEAALQQITDEFFDAFEPAWDPEGNYLYYLANHD 558 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 37/248 (14%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ D+ V + R+ + L P+FS +G + Q D Sbjct: 73 PDLHGDTVVFSYAGDLWSV----SDQGGRATRLTAHPGLELFPKFSPDGSMIAFTGQYDG 128 Query: 281 AMDIYSVDLQSNATERLTNTLFINISAS----------YSPDSSQIVFESDREGK----E 326 +Y + ++LT + ++PD I+F S R+ Sbjct: 129 DEQVYVIPATGGVPKQLTYYPARGPLPARWGYDHQVMGWTPDGKSILFRSLRDSWTIAEG 188 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGV 375 +LY + G K + + +SP G + ++ G + + Sbjct: 189 RLYTVPVGGGPAKLLPPPSSGAAT---FSPDGSRLFYSPLARDFRTWKRYQGGWAQNLFI 245 Query: 376 MKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + + + + + P W +L F+ + G LY +D NE + T Sbjct: 246 IDLKTLERKPIAHTVRTERDPMWFAD-DTLAFNSDRSGTF--NLYKVDPA-TNEVVPLTR 301 Query: 435 AYASDPQW 442 + D +W Sbjct: 302 STTWDVRW 309 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 108/319 (33%), Gaps = 33/319 (10%) Query: 67 EVVSKDLQRSDVFNL--ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 + ++ + RS FNL + + + + + W S GR++ E L Sbjct: 272 DTLAFNSDRSGTFNLYKVDPATNEVVPLTRSTTWDVR-WPSQSND----GRIVYEFDGTL 326 Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 R+ + G + +S G L Sbjct: 327 RIV-----TVSSGEDRGLTIEVPDDGLTRRPERVSAA---------GLIEDFGLSPKGER 372 Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + + + + R L S P +SP+ +AY + D ++L+ Sbjct: 373 ALFAARGEVFTVPIENGTTRALVNSSKVHAKAPIWSPDGSTIAYLS-DASGEEELWLVAQ 431 Query: 245 RIDRAPKRIGNF-RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-F 302 + P+++ + R+M APR+S +G D+ + D+ + ++ Sbjct: 432 DGSKPPRQLTHGGRAMRFAPRWSPDGSAIAFV---DKDGKLLVADVATGNLVEAADSPEE 488 Query: 303 INISASYSPDSSQIVFESDR-EGKEQLYVMQSNGSDQ----KRISQDKEASYFDPVWSPQ 357 + +SPDS + F R G L++ + + ++I+ + F+P W P+ Sbjct: 489 RSTDHVWSPDSRFLAFSLPRPNGNRALFIWSRDAENPEAALQQITDEFF-DAFEPAWDPE 547 Query: 358 GDLIAFTKFSGEKFAIGVM 376 G+ + + I + Sbjct: 548 GNYLYYLANHDFAPQISAI 566 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 109/337 (32%), Gaps = 72/337 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------ 229 ILF S I + L + G + L P FSP+ ++ Y+ Sbjct: 173 SILFRSLRDSWTIAEGRLYTVPVGGGPAKLLPPPSSGAA---TFSPDGSRLFYSPLARDF 229 Query: 230 ----TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y ++++D + K I + P + ++ + + ++Y Sbjct: 230 RTWKRYQGGWAQNLFIIDLKT-LERKPIAHTVRTERDPMWFAD-DTLAFNSDRSGTFNLY 287 Query: 286 SVDLQSNATERLTNTLFINIS-ASYSPDSS---------QIVFES---DRE--------- 323 VD +N LT + ++ S S D +IV S DR Sbjct: 288 KVDPATNEVVPLTRSTTWDVRWPSQSNDGRIVYEFDGTLRIVTVSSGEDRGLTIEVPDDG 347 Query: 324 -----------------------------GKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + +++ + + + + P+W Sbjct: 348 LTRRPERVSAAGLIEDFGLSPKGERALFAARGEVFTVPIENGTTRALVNSSKVHAKAPIW 407 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQ--APTWSPSGRSLIFSRKKD 411 SP G IA+ + + + ++ +DGS+ R L AP WSP G ++ F K Sbjct: 408 SPDGSTIAYLSDASGEEELWLVAQDGSKPPRQLTHGGRAMRFAPRWSPDGSAIAFVDKDG 467 Query: 412 GDTGSKLYS---IDLNGRNETLINTPAYASDPQWVGF 445 + + + ++ E ++ D +++ F Sbjct: 468 KLLVADVATGNLVEAADSPEERSTDHVWSPDSRFLAF 504 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 97/258 (37%), Gaps = 39/258 (15%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G LT + P+FSP+ +A+ D D +VY++ PK Sbjct: 87 DLWSVSDQGGRATRLTA-HPGLELFPKFSPDGSMIAFTGQYDGDE-QVYVI-PATGGVPK 143 Query: 252 RIGNFRSMILAPR----------FSSNGKRALISVQKDEAM----DIYSVDLQSNATERL 297 ++ + + P ++ +GK L +D +Y+V + + L Sbjct: 144 QLTYYPARGPLPARWGYDHQVMGWTPDGKSILFRSLRDSWTIAEGRLYTVPVGGGPAKLL 203 Query: 298 TNTLFINISASYSPDSSQIVFE-----------SDREGKEQLYVMQSNGSDQKRISQDKE 346 +A++SPD S++ + + L+++ ++K I+ Sbjct: 204 PPPSS--GAATFSPDGSRLFYSPLARDFRTWKRYQGGWAQNLFIIDLKTLERKPIAH-TV 260 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 + DP+W D +AF F + + ++ L +++ P+ S GR + Sbjct: 261 RTERDPMWFAD-DTLAFNSDRSGTFNLYKVDPATNEVVPLTRSTTWDVRWPSQSNDGR-I 318 Query: 405 IFSRKKDGDTGSKLYSID 422 ++ + D ++ ++ Sbjct: 319 VY----EFDGTLRIVTVS 332 >gi|169785140|ref|XP_001827031.1| hypothetical protein AOR_1_786034 [Aspergillus oryzae RIB40] gi|83775778|dbj|BAE65898.1| unnamed protein product [Aspergillus oryzae] Length = 647 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 67/362 (18%), Positives = 126/362 (34%), Gaps = 85/362 (23%) Query: 146 SSPASWRKIAHTISD---DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 SS A+ RK H + D+ +G V G + L V + DG+N Sbjct: 15 SSFATARKAMHFAMEQNLDMLPRTHSARGLPAPGKKGVMLMNRIGPSSSELYVANIDGSN 74 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R L + + + FSP+ Q + + + + D +++ S+ A Sbjct: 75 ERKLLGNNSRFDYHASFSPDGQWITFTSERNGDGNSDLYRCRADGSGLEKLVATSSVEDA 134 Query: 263 PRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINIS---------ASYSPD 312 S + + + +++ +DL++ LT+ + S+SPD Sbjct: 135 GVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTSLEGVKGDPTKPNGYFRPSWSPD 194 Query: 313 SSQIVFESDREGKEQ---------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 I F SDR + + +YV++ +G+D ++I+ + S P WSP Sbjct: 195 GEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWSPD 254 Query: 358 GDLIAFTKFSGEK--------------FAI----------GVMKKDGSQERL-------- 385 G I F + + E I + +G+ ++ Sbjct: 255 GSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTAD 314 Query: 386 -----------------------LVEDSNLQAPTWSPSGRSLIF--SRKKDGDTGSKLYS 420 V + +++P+WSP G+S+++ S + KLYS Sbjct: 315 NIGYLIKGGSSEGIHYTAESSTGTVINGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYS 374 Query: 421 ID 422 D Sbjct: 375 WD 376 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 25/233 (10%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI------SVQ 277 + D D V+ T+ + + +G + P +S +G+ + Sbjct: 406 SSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAFGIGAWFQSR 465 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 I + E LTN SYS D +V+ + L +M Sbjct: 466 ATGKGYIARAKADGSYHEILTNGTINAGFPSYSLDGRYLVYRV-WGTEFGLRIMDLTDKS 524 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDS-NLQAP 395 + ++ ++ P +SP G I FT+ + F + ++ DGS ++L N Sbjct: 525 VRVLTTTRD---NLPFYSPDGQRIVFTRRTSYTNFDVCTIRPDGSDLKVLTSSGANDAHA 581 Query: 396 TWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLINTPAY 436 TW+ GR ++++ G +++ ++ +G N+T++ + Sbjct: 582 TWTADGR-ILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADGSNKTILTDSIW 633 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 113/375 (30%), Gaps = 117/375 (31%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + + S+ V+ DG + R + L PR+SP+ ++ + E+ + Sbjct: 215 TGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWSPDGSRIIFYEITTENTWDAHRP 274 Query: 243 DTRIDRAPKRI------------------------------------------------- 253 ++ + + Sbjct: 275 ESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVTADNIGYLIKGGSSEGIHYTAES 334 Query: 254 ---GNFRSMILAPRFSSNGK---------------------------------------- 270 + +P +S +GK Sbjct: 335 STGTVINGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQG 394 Query: 271 RALISVQKDEAMDIYSVDLQSNATE----RLTN----------TLFINISASYSPDSSQI 316 R I+ ++ I ++ + LT L S+SPD I Sbjct: 395 RLAITQKQLGNSSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWI 454 Query: 317 VF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 F +S GK + +++GS + ++ + + P +S G + + + G + Sbjct: 455 AFGIGAWFQSRATGKGYIARAKADGSYHEILT-NGTINAGFPSYSLDGRYLVY-RVWGTE 512 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ET 429 F + +M R+L + P +SP G+ ++F+R + T + +I +G + + Sbjct: 513 FGLRIMDLTDKSVRVLTTTRD-NLPFYSPDGQRIVFTR-RTSYTNFDVCTIRPDGSDLKV 570 Query: 430 LINTPAYASDPQWVG 444 L ++ A + W Sbjct: 571 LTSSGANDAHATWTA 585 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 32/207 (15%) Query: 269 GKRALISVQKDE--AMDIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDR--E 323 GK+ ++ + + + ++Y ++ + +L N + AS+SPD I F S+R + Sbjct: 48 GKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGD 107 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQ 382 G LY +++GS +++ V SP +A+ + + VM + Sbjct: 108 GNSDLYRCRADGSGLEKLVATSSVED-AGVLSPDASKVAWVSTANGYTTNVWVMDLKTGE 166 Query: 383 ERLLVE----------DSNLQAPTWSPSGRSLIFSRKKDGDTGS-------------KLY 419 +R L + P+WSP G + FS ++ + +Y Sbjct: 167 QRNLTSLEGVKGDPTKPNGYFRPSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVY 226 Query: 420 SIDLNGRNETLINT-PAYA-SDPQWVG 444 I +G + I + ++ P+W Sbjct: 227 VIRPDGTDFRKIASREGWSLGSPRWSP 253 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 214 LFEPRFSPNQQKVAY---ATYDDEDILRVYLMDTRIDR-APKRIGNFRSMILAPRFSSNG 269 F+P +SP+ + +A+ A + + Y+ + D + + N P +S +G Sbjct: 442 AFQPSWSPDGEWIAFGIGAWFQSRATGKGYIARAKADGSYHEILTNGTINAGFPSYSLDG 501 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQL 328 + + V E + +DL + LT T + YSPD +IVF + Sbjct: 502 RYLVYRVWGTEFG-LRIMDLTDKSVRVLTTTR--DNLPFYSPDGQRIVFTRRTSYTNFDV 558 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-------------IGV 375 ++ +GSD K ++ A+ W+ G ++ + G + I V Sbjct: 559 CTIRPDGSDLKVLTSSG-ANDAHATWTADGRILYASGMYGFRDEAAIYDNTFQPYGQIFV 617 Query: 376 MKKDGSQERLLVED 389 M DGS + +L + Sbjct: 618 MNADGSNKTILTDS 631 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 22/154 (14%) Query: 313 SSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSG 368 + V +R G +LYV +GS+++++ + + +SP G I FT + Sbjct: 48 GKKGVMLMNRIGPSSSELYVANIDGSNERKLLGNNSRFDYHASFSPDGQWITFTSERNGD 107 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + + DGS LV S+++ SP + + +G + ++ +DL Sbjct: 108 GNSDLYRCRADGSGLEKLVATSSVEDAGVLSPDASKVAWVSTANG-YTTNVWVMDLKTGE 166 Query: 428 ETLINT----------------PAYASDPQWVGF 445 + + + P+++ D +W+ F Sbjct: 167 QRNLTSLEGVKGDPTKPNGYFRPSWSPDGEWIAF 200 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 19/134 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L +MD ++R LT +RD + P +SP+ Q++ + V + K Sbjct: 515 LRIMDLTDKSVRVLTTTRDNL---PFYSPDGQRIVFTRRTSYTNFDVCTIRPD-GSDLKV 570 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMD--------------IYSVDLQSNATERLT 298 + + + ++++G R L + D I+ ++ + LT Sbjct: 571 LTSSGANDAHATWTADG-RILYASGMYGFRDEAAIYDNTFQPYGQIFVMNADGSNKTILT 629 Query: 299 NTLFINISASYSPD 312 ++++ + A Y P+ Sbjct: 630 DSIWEDSMALYLPN 643 >gi|116622694|ref|YP_824850.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225856|gb|ABJ84565.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 853 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 20/228 (8%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ +A+ + ++++ + P +I + + P +S + + S Q Sbjct: 344 TFSPDGSMIAFLNTANG-PAQIWVKNLAQGD-PIQITSGNLPAVQPHWSPKNDQIVFSRQ 401 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 I+SV +L + ++S D ++VF E Q++V +++GS+ Sbjct: 402 GQG---IWSVPPLGGTPRQLIRPG---RNPNFSGDGERLVF----ERGHQIWVARTDGSE 451 Query: 338 QKRISQDKEASYF---DPVWSPQGDLIAFTK-FSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +R+ E Y P S G+ IAF++ G + V+ G + R L D+ + Sbjct: 452 ARRVEGVPEWYYGMDSLPALSAHGEWIAFSRPQIGPHGDLWVIPSAGGKARRLTFDTRIS 511 Query: 394 -APTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPAYASD 439 P W+P + +I+S + G L+ + G+ E L +D Sbjct: 512 TGPVWTPDDQWIIYSSMRGGSFT--LWRVAAAGGKPEALTTGAGEDTD 557 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 102/274 (37%), Gaps = 30/274 (10%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + V + + +T S + +P +SP ++ ++ ++ + Sbjct: 357 TANGPAQIWVKNLAQGDPIQIT-SGNLPAVQPHWSPKNDQIVFSRQGQG----IWSVPPL 411 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN----TL 301 + I R+ P FS +G+R + + I+ + R+ Sbjct: 412 GGTPRQLIRPGRN----PNFSGDGERLVF----ERGHQIWVARTDGSEARRVEGVPEWYY 463 Query: 302 FINISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 ++ + S I F + G L+V+ S G +R++ D S PVW+P Sbjct: 464 GMDSLPALSAHGEWIAFSRPQIGPHGDLWVIPSAGGKARRLTFDTRIS-TGPVWTPDDQW 522 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 I ++ G F + + G + L S GR LI++ ++ KL Sbjct: 523 IIYSSMRGGSFTLWRVAAAGGKPEALTTGAGEDTDAAISSDGRHLIYTNARN---TWKLA 579 Query: 420 SIDL-NGRNETL------INTPAYASDPQWVGFM 446 +DL G+ + L + P+++ D + + FM Sbjct: 580 LLDLATGKQKELMERRNGLAFPSFSPDGERIAFM 613 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 97/268 (36%), Gaps = 11/268 (4%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 ++ S L V+ G R LT +I P ++P+ Q + Y++ Sbjct: 478 IAFSRPQIGPHGDLWVIPSAGGKARRLTFDT-RISTGPVWTPDDQWIIYSSMRGGSF--T 534 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 P+ + SS+G+ + + ++ + +DL + + L Sbjct: 535 LWRVAAAGGKPEALTTGAGEDTDAAISSDGRHLIYTNARN-TWKLALLDLATGKQKELME 593 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S+SPD +I F G Q++ ++ +G++ ++++ K P WS G Sbjct: 594 RRNGLAFPSFSPDGERIAFMQVAAGDPQIFTIRRDGTEMRQMTLGKGEINGLPRWSADGA 653 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ---APTWSPSGRSLIFSRKKDGDTGS 416 + + + + + G + ++ + + A P G L ++ + + + Sbjct: 654 FVYYYRAYPTP-SFRKVPAAGGADTEVIAGWSWETHNAAQEDPGGGRLAYTLNQKNNQVA 712 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 L +G+ L +P+W Sbjct: 713 TLVREIASGKETRLSEI---LDNPRWSP 737 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 95/305 (31%), Gaps = 56/305 (18%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I++ S S +L + G LT + + S + + + Y + + Sbjct: 523 IIYSSMRGGS----FTLWRVAAAGGKPEALTTGAGE-DTDAAISSDGRHLIYT--NARNT 575 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 ++ L+D + + + + P FS +G+R I+++ + Sbjct: 576 WKLALLDLATGKQKELMERRNGLAF-PSFSPDGERIAFMQVAAGDPQIFTIRRDGTEMRQ 634 Query: 297 LTNTLF-INISASYSPDSSQIVF----------------------------------ESD 321 +T IN +S D + + + + D Sbjct: 635 MTLGKGEINGLPRWSADGAFVYYYRAYPTPSFRKVPAAGGADTEVIAGWSWETHNAAQED 694 Query: 322 REGKEQLYVMQSNGSDQ----KRISQDKEASYF----DPVWSPQGDLIAFTKFSGEKFAI 373 G Y + + + I+ KE +P WSP G + T I Sbjct: 695 PGGGRLAYTLNQKNNQVATLVREIASGKETRLSEILDNPRWSPDGTALVGTMADQG--VI 752 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + G + + S P W +G + F R + G L+SIDL R E + Sbjct: 753 RICPVAGGACTGVAKGSL---PVWESTGAKIYFWRHRPETAGQYLWSIDLKTREEKELAA 809 Query: 434 PAYAS 438 S Sbjct: 810 LGSFS 814 >gi|299137156|ref|ZP_07030338.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX8] gi|298600561|gb|EFI56717.1| transcriptional regulator, CadC [Acidobacterium sp. MP5ACTX8] Length = 747 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 86/474 (18%), Positives = 153/474 (32%), Gaps = 92/474 (19%) Query: 27 FFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDS 86 F +V+ +P+ +A + S D + Sbjct: 248 FTQLETSGIEEVSVAGGAEAPIHVAIEEPWSGDVSP--------------------DGST 287 Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 P W+ LV G + + G V W K + Sbjct: 288 LLIISQAGGQGPASSLWSFR----LVGGSLHRLGS---AVSSAAWSPDGEKIVYASASGD 340 Query: 147 SPASWRKI--AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 R AH I+ G S + + L + DGAN+R Sbjct: 341 ISVMRRDGSEAHRIASS--------GGYVRSIAWSPNGDTIRFSKDGLLWEVSADGANLR 392 Query: 205 YLTP--SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 L P S+ + +++P+ + V A + + +P ++ ++ Sbjct: 393 QLLPGWSKSSTQWSGKWTPDGRFVFVADGQIWLLEDQPGFGSNRPSSPVQLTFGPTVWDR 452 Query: 263 PRFSSNGKRA-------------------------------LISVQKDE---------AM 282 P S +GK+ +S D A Sbjct: 453 PISSPDGKKIFASGLTKRGELVRFDIKSSQFKPFLSGISAEFVSFSSDGKSVAYVSYPAG 512 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSD-QKR 340 ++ +L + +LT S +SPD SQI F + +G + ++V+ S+GS +R Sbjct: 513 ILWRANLDGSNPIQLTEPPVYPKSVRWSPDGSQIAFVNRTADGVDVIFVVPSDGSGKPQR 572 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSG----EKFAIGVMKKDGSQERLLVEDSNLQAPT 396 IS D + DP WSP G I F+ K + ++ ++ L P Sbjct: 573 ISPDDRQAETDPSWSPDGRRIVFSTSPNVGASAKSDLRILDIASHTAAIIPASDGLLVPH 632 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL----INTPAYASDPQWVGFM 446 WSP GRS+ KL+++ +G+ TL + P ++ D +W+ ++ Sbjct: 633 WSPDGRSIA--AMTLDTMSMKLFNLS-SGKWTTLYTGAVAFPEWSHDGRWIYYV 683 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 79/196 (40%), Gaps = 12/196 (6%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + DG+N LT R+SP+ ++A+ + + ++++ + P+R Sbjct: 514 LWRANLDGSNPIQLTEPPVYPKSV-RWSPDGSQIAFVNRTADGVDVIFVVPSDGSGKPQR 572 Query: 253 IG-NFRSMILAPRFSSNGKRALISVQKDEAM----DIYSVDLQSNATERLTNTLFINISA 307 I + R P +S +G+R + S + D+ +D+ S+ + + + + Sbjct: 573 ISPDDRQAETDPSWSPDGRRIVFSTSPNVGASAKSDLRILDIASHTAAIIPASDGLLV-P 631 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD I + + + + + + P WS G I + +++ Sbjct: 632 HWSPDGRSIA--AMTLDTMSMKLFNLSSGKWTTLYT---GAVAFPEWSHDGRWIYYVRWT 686 Query: 368 GEKFAIGVMKKDGSQE 383 + + + +DG QE Sbjct: 687 TDPAVLRIRAEDGKQE 702 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 22/190 (11%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE- 280 + ++ + + I V + I S S +G LI Q Sbjct: 242 DGSRIYFTQLETSGIEEVSVAGGAEAPIHVAIEEPWSGD----VSPDGSTLLIISQAGGQ 297 Query: 281 --AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 A ++S L + RL + + SA++SPD +IV+ S + VM+ +GS+ Sbjct: 298 GPASSLWSFRLVGGSLHRLGSAVS---SAAWSPDGEKIVYASASG---DISVMRRDGSEA 351 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 RI+ WSP GD I F+K + + DG+ R L+ + + WS Sbjct: 352 HRIASSG-GYVRSIAWSPNGDTIRFSKDG----LLWEVSADGANLRQLLPGWSKSSTQWS 406 Query: 399 ----PSGRSL 404 P GR + Sbjct: 407 GKWTPDGRFV 416 >gi|301310105|ref|ZP_07216044.1| MdsD protein [Bacteroides sp. 20_3] gi|300831679|gb|EFK62310.1| MdsD protein [Bacteroides sp. 20_3] Length = 1080 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 122/337 (36%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D + K R T ++ G + F + S Sbjct: 196 DIWMYDTQTGKH---TNLTDHAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNTPQS 252 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 V +R+L+ S D L ++ + + Y + +V + R Sbjct: 253 IT-----AVTKFKTHPVRFLSTSSDNTLC---YTYDGE--IYTQRPGVNPQKVRIDLIRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ N + S +GK+ ++++ +++ N T+++TNT Sbjct: 303 DQEQISDLNSSKGATSATVSPDGKQIALTLRG----EVFVTSADYNTTKQITNTPAAETG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWS 355 +SPD+ + + S+R G QLY+ + +++ + K P +S Sbjct: 359 VCFSPDNRTLAYASERGGNWQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + ++ + V+ + + R + + S + +WSP G+ L F Sbjct: 419 PDGKELAFIE---DRMRLMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFI 475 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 K D S + + G T + Y S PQWV Sbjct: 476 GNKH-DPYSDIGLVSAQGGEITNLTNSGYTSTSPQWV 511 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 34/215 (15%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S + P + S +G + D IY V + +LT + +SP Sbjct: 16 SYAVTPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSP 71 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 D QI F SDR G L+VM SNG + ++ AS ++P G + F+ Sbjct: 72 DGKQIAFASDRNGNFDLFVMPSNGGTAQCLTT-HSASEIPSAFTPDGKYVLFSASIQDPA 130 Query: 367 ------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------- 411 + + + G + ++ + + SG++ ++ +K Sbjct: 131 QSALFPTSAMTELYKVPIGGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHH 189 Query: 412 -GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L + + + Sbjct: 190 TSSVTRDIWMYDTQTGKHTNLTDHAGEDRNAVFTP 224 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 35/246 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 29 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQASYECTPIWSPDGKQIAFASDR 82 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + + LT I ++++PD ++F + + Sbjct: 83 NGNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTE 142 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S I + Sbjct: 143 LYKVPIGGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSVTRDIWM 199 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L + + ++P G+++ F +++G + +YS LN +++ Sbjct: 200 YDTQTGKHTNLTDHAGEDRNAVFTPDGQTVYFLSERNGGS-FNVYSFPLN-TPQSITAVT 257 Query: 435 AYASDP 440 + + P Sbjct: 258 KFKTHP 263 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 53/352 (15%), Positives = 121/352 (34%), Gaps = 48/352 (13%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK L + ++ V K+ ++PA+ + + + + G+ Sbjct: 319 ATVSPDGKQIALTLRGEVF-VTSADYNTTKQITNTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + ++ + ++ L PS+ P+FSP+ +++A+ Sbjct: 378 WQLYLAKIARKEEANFPNATII-------EEEVLLPSKTVERNYPQFSPDGKELAFI--- 427 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAP-----RFSSNGKR--ALISVQK-DEAMDI 284 ED +R+ +++ + +++ + + +S +GK K D DI Sbjct: 428 -EDRMRLMVVNLET-KKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFIGNKHDPYSDI 485 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q LTN+ + + S + D + I+F ++R G L M Sbjct: 486 GLVSAQGGEITNLTNSGYTSTSPQWVLDGNAILFTTERYGMRAHASWGSLNDAMLVFMNQ 545 Query: 334 NGSDQKRISQDKE-------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + D+ R+S++ + + + + Sbjct: 546 DAYDKFRLSKEDYELQKELEKEQKEVTGDKTDDKKKEDKADEKKDEKPKDIVVELKGIQD 605 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 RL S + + S +G +L + + L+ +DL + L++ Sbjct: 606 RILRLTPNSSEMGSAVISKNGETLYYFS--AFEDKYDLWKMDLRKKETKLLH 655 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 40 YKGDIYKVPAKGGTATQLTTQAS-YECTPIWSPDGKQIAFASDRNGNFDLFVMPSN--GG 96 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERL 297 + + + + F+ +GK L S + +Y V + TE++ Sbjct: 97 TAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELYKVPIGGGRTEQV 156 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ D Sbjct: 157 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSVTRDIWMYDTQTGKHTNLT-D 212 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG 380 + V++P G + F ++ +G F + + Sbjct: 213 HAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNT 249 >gi|320162104|ref|YP_004175329.1| putative S9 family peptidase [Anaerolinea thermophila UNI-1] gi|319995958|dbj|BAJ64729.1| putative S9 family peptidase [Anaerolinea thermophila UNI-1] Length = 668 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 114/331 (34%), Gaps = 75/331 (22%) Query: 176 RILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD- 232 ++F + V K +L V+ G + T D P +SP+ K+A+ + Sbjct: 28 HVVFSVQRVERKNEKKFSNLWVVPTRGGSAFQFTVG-DHTDVHPVWSPDGNKIAFLSNRL 86 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE------------ 280 D++ + + +G I +S +G++ L++V+K + Sbjct: 87 DKEKPPALFIIPFGGGEARPLGQIEGEIGEILWSPDGRKLLLTVRKTDEEVLQRRKDPER 146 Query: 281 --------------------------AMDIYSVDLQSNATERLTNTLFIN-ISASYSPDS 313 ++ +D + +LT+ + S +SPD Sbjct: 147 KSLGTPQRHVERLFYKLDGYGYLPKERWHLWVMDAGTGRAMQLTDHPVWDERSPEWSPDG 206 Query: 314 SQIVFESDREGKEQ-------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 I F S+R ++++ + G + +++ S +SP G +A+ Sbjct: 207 QWIAFISNRSEDPDSTPEYEDIFIIPARGGEARKL-PTPVGSKSSLRFSPDGKYLAYYAQ 265 Query: 367 SG-----EKFAIGVMKKDGSQERL-LVEDSNLQA---------------PTWSPSGRSLI 405 G + V+ DGSQ + L E +L P WS G SLI Sbjct: 266 EGADEGFRNEGLWVVPVDGSQPPVNLTEKYDLHVSSWTINDIGAAATNRPVWSADGESLI 325 Query: 406 FSRKKDGDTGSKLYSIDLNGRN-ETLINTPA 435 F G S + I +G ETLI Sbjct: 326 FPVVLHGS--SLMMRIRRDGSGLETLIGEGG 354 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 93/273 (34%), Gaps = 58/273 (21%) Query: 210 RDQILFEPRFSPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 R Q+L +P+ SP+ + V ++ ++ ++++ TR A + + P Sbjct: 13 RFQVLADPQISPDGEHVVFSVQRVERKNEKKFSNLWVVPTRGGSAFQ-FTVGDHTDVHPV 71 Query: 265 FSSNGKRALI---SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 +S +G + + K++ ++ + L +SPD +++ Sbjct: 72 WSPDGNKIAFLSNRLDKEKPPALFIIPFGGGEARPLGQIEGEIGEILWSPDGRKLLLTVR 131 Query: 322 RE----------------GKEQ----------------------LYVMQSNGSDQKRISQ 343 + G Q L+VM + +++ Sbjct: 132 KTDEEVLQRRKDPERKSLGTPQRHVERLFYKLDGYGYLPKERWHLWVMDAGTGRAMQLTD 191 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVED-SNLQAP 395 P WSP G IAF E I ++ G + R L + + Sbjct: 192 HPVWDERSPEWSPDGQWIAFISNRSEDPDSTPEYEDIFIIPARGGEARKLPTPVGSKSSL 251 Query: 396 TWSPSGRSLIFSRKKDGDTGSK---LYSIDLNG 425 +SP G+ L + ++ D G + L+ + ++G Sbjct: 252 RFSPDGKYLAYYAQEGADEGFRNEGLWVVPVDG 284 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 69/225 (30%), Gaps = 25/225 (11%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-----LRVYLM 242 + L VMD LT P +SP+ Q +A+ + ED + Sbjct: 171 KERWHLWVMDAGTGRAMQLTDHPVWDERSPEWSPDGQWIAFISNRSEDPDSTPEYEDIFI 230 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-----EAMDIYSVDLQSNA-TER 296 +++ + RFS +GK Q+ ++ V + + Sbjct: 231 IPARGGEARKLPTPVGSKSSLRFSPDGKYLAYYAQEGADEGFRNEGLWVVPVDGSQPPVN 290 Query: 297 LTNTLFINIS--------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 LT +++S +S D ++F G + ++ +GS + + Sbjct: 291 LTEKYDLHVSSWTINDIGAAATNRPVWSADGESLIFPVVLHGSSLMMRIRRDGSGLETLI 350 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + V S Q + + I V R L Sbjct: 351 GEGGVFHSHTVDSRQDRMAGIYGNFSDPGQIAVYDFRTGNLRTLT 395 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 26/192 (13%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM------ 282 Y ++ +++MD RA + + +P +S +G+ + E Sbjct: 166 YGYLPKERWHLWVMDAGTGRAMQLTDHPVWDERSPEWSPDGQWIAFISNRSEDPDSTPEY 225 Query: 283 -DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-----GKEQLYVMQSNGS 336 DI+ + + +L + S +SPD + + + E L+V+ +GS Sbjct: 226 EDIFIIPARGGEARKLPTPVGSKSSLRFSPDGKYLAYYAQEGADEGFRNEGLWVVPVDGS 285 Query: 337 DQKR--------------ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 I+ A+ PVWS G+ + F + +++DGS Sbjct: 286 QPPVNLTEKYDLHVSSWTINDIGAAATNRPVWSADGESLIFPVVLHGSSLMMRIRRDGSG 345 Query: 383 ERLLVEDSNLQA 394 L+ + + Sbjct: 346 LETLIGEGGVFH 357 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 55/196 (28%) Query: 305 ISASYSPDSSQIVFESDREGK------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD +VF R + L+V+ + G + + + + PVWSP G Sbjct: 18 ADPQISPDGEHVVFSVQRVERKNEKKFSNLWVVPTRGGSAFQFT-VGDHTDVHPVWSPDG 76 Query: 359 DLIAFTKFS---GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDT 414 + IAF + A+ ++ G + R L + + + WSP GR L+ + +K + Sbjct: 77 NKIAFLSNRLDKEKPPALFIIPFGGGEARPLGQIEGEIGEILWSPDGRKLLLTVRKTDEE 136 Query: 415 GSK------------------------------------LYSIDL-NGRNETLIN----- 432 + L+ +D GR L + Sbjct: 137 VLQRRKDPERKSLGTPQRHVERLFYKLDGYGYLPKERWHLWVMDAGTGRAMQLTDHPVWD 196 Query: 433 --TPAYASDPQWVGFM 446 +P ++ D QW+ F+ Sbjct: 197 ERSPEWSPDGQWIAFI 212 >gi|332142931|ref|YP_004428669.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143024|ref|YP_004428762.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552953|gb|AEA99671.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553046|gb|AEA99764.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype'] Length = 1111 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 98/256 (38%), Gaps = 43/256 (16%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS-----SNGKRALISVQKDEAM 282 YA D E+ L + + P + +S NG+ + D Sbjct: 26 YAQNDSEEKTEYELDNWDVSNPPYALNEVTIKTNETTWSSLDVAPNGEFMVF----DMLG 81 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V++ LT NI S SPD I F SD++G ++VM +GS+ ++++ Sbjct: 82 DLYKVNMNGGDATPLTQDFAWNIHPSISPDGKHIAFISDKDGLSNVWVMDIDGSNLRQVT 141 Query: 343 QDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLL-------VEDS 390 ++K P WSP G+ + + S I + K G + + Sbjct: 142 KEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQIKARNSGKRDQQ 201 Query: 391 NLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSID------------LNGRNETL 430 N+ P +S G+ + F+ + D +++I ++G + Sbjct: 202 NIADPVFSHDGKYIYFTENTVPGARFEYNRDPLEGIFAITRYDRETGEESRYISGTGGAV 261 Query: 431 INTPAYASDPQWVGFM 446 + TP + D +++ F+ Sbjct: 262 VPTP--SPDGKYIAFV 275 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 141/414 (34%), Gaps = 86/414 (20%) Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVL---VTGRVIKEGKDRLRV----EFRLWDVK 134 ++ S+ Q + + +W+ VT + + L V EF ++D Sbjct: 21 MAPASYAQNDSEEKTEYELDNWDVSNPPYALNEVTIKTNETTWSSLDVAPNGEFMVFD-- 78 Query: 135 DRKQIIGKKFFSSPA--SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 ++G + + + + +I+ SI+ + I F+S ++ Sbjct: 79 ----MLGDLYKVNMNGGDATPLTQDFAWNIHPSISPDG----KHIAFIS----DKDGLSN 126 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDR 248 + VMD DG+N+R +T + ++ P++SP+ + + + +++ Sbjct: 127 VWVMDIDGSNLRQVTKEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSGGD 186 Query: 249 APKRIGNFRS-----MILAPRFSSNGKRALIS----------VQKD---EAMDIYSVDLQ 290 + I P FS +GK + +D I D + Sbjct: 187 GLQIKARNSGKRDQQNIADPVFSHDGKYIYFTENTVPGARFEYNRDPLEGIFAITRYDRE 246 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------- 342 + R + + + SPD I F + + L++ + + ++ Sbjct: 247 TGEESRYISGTGGAVVPTPSPDGKYIAFVRRVKDRTGLFLKEIKTGVETPLTLELERDMQ 306 Query: 343 --QDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVED---------- 389 E + W P I + ++G KF I + K + VE Sbjct: 307 EGFGSEGYFAYFDWMPDSSEIVY--WTGGKFHTIDIEDKITRTMDITVEGTVKYADALRF 364 Query: 390 --------SNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLI 431 +++ W SP+G++++F KLY D+ +G+ + L Sbjct: 365 DVDVAPDEFDVRMIRWSQMSPNGKTVLF------QALGKLYVRDVKSGKIKRLT 412 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGII-----KNSLCVMDRDGANIRYLTPSRD 211 +D + + +F+ R++ S+ +G L V D I+ LT D Sbjct: 357 KYADALRFDVDVAPDEFDVRMIRWSQMSPNGKTVLFQALGKLYVRDVKSGKIKRLTKQND 416 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PRFS + +K+ Y T+DD+D+ V ++ R K I + P FS++G++ Sbjct: 417 HDEYYPRFSNDGKKIVYTTWDDQDLGTVRVVSAR-GGKGKVITQQPGHYIEPSFSADGEK 475 Query: 272 ALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 + IY DL+ ++ ++T+ + A ++ ++ F Sbjct: 476 VVFRKFTGGFLLDPTYSVEPGIYVADLEEDSVSKVTDNGYN---AHFAGGDDRVYFTESA 532 Query: 323 EG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 G + QL + G+D KR + S +AF F V Sbjct: 533 GGEAYYETQLSSVNLQGND-KRTHLYGANKVSEYKLSHDKKWVAFVYQ----FKTYVAPF 587 Query: 379 DGSQERLLVEDSNLQAP------------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + +R+ + + P TWSP ++L + G L+S L+ Sbjct: 588 VENGKRITIGPNMTSLPVTQLSSRAGEYLTWSPDNKTLSWF------NGPTLFSRSLDEA 641 Query: 427 NETLINTPAYASDP 440 L P +P Sbjct: 642 FAFLDGAPETLPEP 655 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 45/349 (12%), Positives = 110/349 (31%), Gaps = 65/349 (18%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFN--SRILFVSESVVSGIIKNSLCVMDRDGAN---- 202 ++ R++ S+ I+ G++ ++ + S S+ +G + + + G + Sbjct: 135 SNLRQVTKEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAG----EIWMYHKSGGDGLQI 190 Query: 203 -IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD-----------TRIDRAP 250 R Q + +P FS + + + + Y D R Sbjct: 191 KARNSGKRDQQNIADPVFSHDGKYIYFTENTVPGARFEYNRDPLEGIFAITRYDRETGEE 250 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-----------N 299 R + + P S +GK + + ++ ++++ LT Sbjct: 251 SRYISGTGGAVVPTPSPDGKYIAFVRRVKDRTGLFLKEIKTGVETPLTLELERDMQEGFG 310 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY---------- 349 + + PDSS+IV+ + + + + + + E + Sbjct: 311 SEGYFAYFDWMPDSSEIVYWT----GGKFHTIDIEDKITRTMDITVEGTVKYADALRFDV 366 Query: 350 ------------FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--P 395 SP G + F + V + + L + ++ P Sbjct: 367 DVAPDEFDVRMIRWSQMSPNGKTVLFQALG----KLYVRDVKSGKIKRLTKQNDHDEYYP 422 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +S G+ ++++ D D G+ G+ + + P + +P + Sbjct: 423 RFSNDGKKIVYTTWDDQDLGTVRVVSARGGKGKVITQQPGHYIEPSFSA 471 >gi|262194670|ref|YP_003265879.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078017|gb|ACY13986.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1609 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 106/265 (40%), Gaps = 17/265 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V S ++ + DGA + ++ FSP+ ++VA A+ D V + Sbjct: 989 QRVASASSDATVRIWRVDGAGETTVLRGHSDMVTSVDFSPDGRRVASASRDK----SVRV 1044 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + ++ + RFS +G+ + S +D ++ +++ D + + Sbjct: 1045 WRADGTGDERILIGHEGVVSSVRFSPDGRFLV-SASEDASVRVWNAD-GTGTPRIFRDHD 1102 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SA +SPD ++I S + + + ++GS + + EA + +SP G + Sbjct: 1103 EAVHSAEFSPDGARIAATS---ADKTIRIWNADGSGTPLVLRGHEADVWTARFSPDGKRL 1159 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLY 419 T + + + DGS L++ + +SP G+ ++ + D +++ Sbjct: 1160 VSTSYDNT---MRIWNTDGSATPLVLRGHEVAVVAADFSPDGQRVVSASY---DNSVRIW 1213 Query: 420 SIDLNGRNETLINTPAYASDPQWVG 444 + D G +L + D + Sbjct: 1214 NADGTGTPLSLRGHDDWVMDVAFSP 1238 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 16/245 (6%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E ++R + VVSG + S+ + + DG+ + + FSP+ Q+V Sbjct: 1311 HENEVLSTRFSPDGKRVVSGSMDKSVRIWNSDGSGRPTVLRGHQSWVTATSFSPDGQRVL 1370 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + D V + + R P + +++++ FS +G+R S +D + +++ Sbjct: 1371 STSADQ----TVRIWELDGSRDPVVLRGHNNIVVSASFSPDGQRVA-SASRDGTVRVWNA 1425 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIV-FESDREGKEQLYVMQSNGSDQKRISQDKE 346 D S A+ + + S S+SPD ++ SDR + V ++G+ I + E Sbjct: 1426 D-GSGASRIIPDHGEAVWSVSFSPDGRRLASASSDRT----IRVWNAHGNGSPVILRGHE 1480 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVE-DSNLQAPTWSPSGRSL 404 +SP G I I + DG ++L + +SP G+S+ Sbjct: 1481 DGITSVDFSPDGQRILSGSKDKT---IRIWNADGHGPPQILSRYKGAVHTAQFSPDGQSM 1537 Query: 405 IFSRK 409 + S Sbjct: 1538 VSSSD 1542 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 13/228 (5%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + L RFSP+ Q+VA A+ D V + + M+ + Sbjct: 968 ARTVFSEHTGALSAVRFSPDGQRVASASSD----ATVRIWRVDGAGETTVLRGHSDMVTS 1023 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 FS +G+R S +D+++ ++ D + L + S +SPD +V S+ Sbjct: 1024 VDFSPDGRRVA-SASRDKSVRVWRAD-GTGDERILIGHEGVVSSVRFSPDGRFLVSASE- 1080 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + V ++G+ RI +D + + +SP G IA T + + I G+ Sbjct: 1081 --DASVRVWNADGTGTPRIFRDHDEAVHSAEFSPDGARIAATS-ADKTIRIWNADGSGTP 1137 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 L ++++ +SP G+ L+ + D ++++ D + L Sbjct: 1138 LVLRGHEADVWTARFSPDGKRLVSTSY---DNTMRIWNTDGSATPLVL 1182 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 109/264 (41%), Gaps = 21/264 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + VVS NS+ + + DG D + + FSP+ V A+ D + Sbjct: 1199 QRVVSASYDNSVRIWNADGTGTPLSLRGHDDWVMDVAFSPDGAHVVSASMDK----SARI 1254 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + + + FS +G+R ++S D ++ I++ D + L Sbjct: 1255 WPSHSSDELVVLRGHLDQVWSADFSPDGQR-VVSASLDGSVRIWNAD-GTGTPVVLRGHE 1312 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +S +SPD ++V S + + + S+GS + + + ++ +SP G + Sbjct: 1313 NEVLSTRFSPDGKRVVSGSM---DKSVRIWNSDGSGRPTVLRGHQSWVTATSFSPDGQRV 1369 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLY 419 T + + + DGS++ +++ N + ++SP G+ + S +DG +++ Sbjct: 1370 LSTSADQT---VRIWELDGSRDPVVLRGHNNIVVSASFSPDGQRVA-SASRDGTV--RVW 1423 Query: 420 SIDLNGRNETLINTPAYASDPQWV 443 + D +G + +I A W Sbjct: 1424 NADGSGAS-RIIPDHGEA---VWS 1443 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 54/380 (14%), Positives = 139/380 (36%), Gaps = 56/380 (14%) Query: 82 ISQDSFKQKITNPDSIPRFQDWNS---------LGAQVLVTGRVIKEGKDRLRVE----- 127 + +++ + + W + +G + +V+ V R V Sbjct: 1024 VDFSPDGRRVASASRDKSVRVWRADGTGDERILIGHEGVVS-SVRFSPDGRFLVSASEDA 1082 Query: 128 -FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 R+W+ +P +R H + ++ + G + + Sbjct: 1083 SVRVWNADG---------TGTPRIFRD--HDEA--VHSAEFSPDGA----------RIAA 1119 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 ++ + + DG+ + + ++ RFSP+ +++ +YD+ + + +T Sbjct: 1120 TSADKTIRIWNADGSGTPLVLRGHEADVWTARFSPDGKRLVSTSYDN----TMRIWNTDG 1175 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 P + ++A FS +G+R ++S D ++ I++ D L + Sbjct: 1176 SATPLVLRGHEVAVVAADFSPDGQR-VVSASYDNSVRIWNADGTGTPLS-LRGHDDWVMD 1233 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++SPD + +V S + + S+ SD+ + + + +SP G + Sbjct: 1234 VAFSPDGAHVVSASM---DKSARIWPSHSSDELVVLRGHLDQVWSADFSPDGQRVVSASL 1290 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 G + + DG+ +++ + + +SP G+ ++ D ++++ D + Sbjct: 1291 DGS---VRIWNADGTGTPVVLRGHENEVLSTRFSPDGKRVVSGSM---DKSVRIWNSDGS 1344 Query: 425 GRNETLINTPAYASDPQWVG 444 GR L ++ + + Sbjct: 1345 GRPTVLRGHQSWVTATSFSP 1364 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 13/197 (6%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 + A RFS +G+R S D + I+ VD T L + S + Sbjct: 969 RTVFSEHTGALSAVRFSPDGQRVA-SASSDATVRIWRVDGA-GETTVLRGHSDMVTSVDF 1026 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++ S + + V +++G+ +RI E +SP G + E Sbjct: 1027 SPDGRRVASASR---DKSVRVWRADGTGDERILIGHEGVVSSVRFSPDGRFLVSAS---E 1080 Query: 370 KFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 ++ V DG+ + D + + + +SP G + + D ++++ D +G Sbjct: 1081 DASVRVWNADGTGTPRIFRDHDEAVHSAEFSPDGARIAATS---ADKTIRIWNADGSGTP 1137 Query: 428 ETLINTPAYASDPQWVG 444 L A ++ Sbjct: 1138 LVLRGHEADVWTARFSP 1154 >gi|319953311|ref|YP_004164578.1| peptidase s41 [Cellulophaga algicola DSM 14237] gi|319421971|gb|ADV49080.1| peptidase S41 [Cellulophaga algicola DSM 14237] Length = 1085 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 100/258 (38%), Gaps = 28/258 (10%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-MILA-P 263 +T QI F +F + + E ++L++ + + M A P Sbjct: 235 ITKEEKQITFHKKFDVKSLDANHNSIVYEQGGYLHLVNPETGATNQLAITVKGDMNFARP 294 Query: 264 RF-------------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASY 309 R+ S GKRA+ + D I++V ++ + +T T I + + + Sbjct: 295 RWENVTAKQLTNPNISPTGKRAVFEHRGD----IFTVPKENGTWKNITKTSGIADRAPVW 350 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SP +I + SD G+ QL + +G +K YF P WSP G IA++ Sbjct: 351 SPQGDKIAWFSDATGEYQLVIANQDGEQKKSYKLPNNTFYFKPDWSPDGKNIAYS---DT 407 Query: 370 KFAIGVMKK-DGSQERLLVED----SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + I ++ G E++ + + PTWSP + + F ++ + + + Sbjct: 408 DYNIWIINLMTGKAEKVATDSYAHPTRTMNPTWSPDSQWIAFPKQLVNNYKAIFAYNNTT 467 Query: 425 GRNETLINTPAYASDPQW 442 L + A A P W Sbjct: 468 KETIQLTDGLADAISPIW 485 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 67/372 (18%), Positives = 126/372 (33%), Gaps = 98/372 (26%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R H +D + E + +LF S + N L + G+ + T Sbjct: 98 RLTYHPSADFV------EGWTPDGEVLFRSGRESKPTVTNKLYKVSAAGS---FPTAIDI 148 Query: 212 QILFEPRFSPNQQKVAYA----------TYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 FS N + +AY Y + +++++ + L Sbjct: 149 PRAAYGEFSKNGKYIAYTPITSWDPEWRNYRGGQAMPIWIVNMDTKELITTPQPTQERHL 208 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL------------------------ 297 P + + ++D A +I+S D + +++ Sbjct: 209 YPVW--QDSKVFYLSERDYASNIWSFDPITKEEKQITFHKKFDVKSLDANHNSIVYEQGG 266 Query: 298 -----------TNTLFIN--------------------ISASYSPDSSQIVFESDREGKE 326 TN L I + + SP + VF E + Sbjct: 267 YLHLVNPETGATNQLAITVKGDMNFARPRWENVTAKQLTNPNISPTGKRAVF----EHRG 322 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-- 384 ++ + K I++ + PVWSPQGD IA+ + ++ + + +DG Q++ Sbjct: 323 DIFTVPKENGTWKNITKTSGIADRAPVWSPQGDKIAWFSDATGEYQLVIANQDGEQKKSY 382 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNE----------TLINT 433 L ++ P WSP G+++ +S DT ++ I+L G+ E T Sbjct: 383 KLPNNTFYFKPDWSPDGKNIAYS-----DTDYNIWIINLMTGKAEKVATDSYAHPTRTMN 437 Query: 434 PAYASDPQWVGF 445 P ++ D QW+ F Sbjct: 438 PTWSPDSQWIAF 449 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 33/245 (13%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 ++ Q+L +P S ++ + +D R+ + P Sbjct: 15 FVNAQGTQLLRQPTIS--DTEIVFVYAND------LWKTPLSGGEAIRLTSNEGYESNPH 66 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +GK + + D +D+Y + +RLT + ++PD +++F S RE Sbjct: 67 FSKDGKTIAFTGEYDGNVDVYIIPATGGEPKRLTYHPSADFVEGWTPDG-EVLFRSGRES 125 Query: 325 KE----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGE 369 K +LY + + GS I + A +S G IA+T G+ Sbjct: 126 KPTVTNKLYKVSAAGSFPTAIDIPRAAY---GEFSKNGKYIAYTPITSWDPEWRNYRGGQ 182 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 I ++ D + + + + P W + + + ++ D S ++S D + Sbjct: 183 AMPIWIVNMDTKELITTPQPTQERHLYPVW-QDSK-VFYLSER--DYASNIWSFDPITKE 238 Query: 428 ETLIN 432 E I Sbjct: 239 EKQIT 243 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 67/162 (41%), Gaps = 10/162 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L + ++DG + + F+P +SP+ + +AY+ D +++++ Sbjct: 361 SDATGEYQLVIANQDGEQKKSYKLPNNTFYFKPDWSPDGKNIAYSDTD----YNIWIINL 416 Query: 245 RIDRAPKRIGN---FRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNT 300 +A K + + + P +S + + Q + I++ + + T +LT+ Sbjct: 417 MTGKAEKVATDSYAHPTRTMNPTWSPDSQWIAFPKQLVNNYKAIFAYNNTTKETIQLTDG 476 Query: 301 LFINISASYSPDSSQIVF-ESDREGKEQLYV-MQSNGSDQKR 340 L IS + S + F S G + ++ M S ++ R Sbjct: 477 LADAISPIWDESGSYLYFLASTNYGLQSGWLDMSSYDTNVTR 518 >gi|134100530|ref|YP_001106191.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] gi|291004991|ref|ZP_06562964.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] gi|133913153|emb|CAM03266.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] Length = 1054 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 3/182 (1%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D+L V A R+ + P FS +G R + +D + D Sbjct: 47 DLLNVLWSIPIGGGAAVRLTDVLQEAAEPDFSPDGSRIVFQSYQDGNFHLCLADRDGRGL 106 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 RLT+ +SPD +++ F ++ +G+ ++V+ + A PVW Sbjct: 107 TRLTSGPTDQREPRFSPDGTRVAFAAETDGRYGIHVLTLATGEIAA-WTSGSAQEAQPVW 165 Query: 355 SPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 +P G IAFT + I ++ G++ L+ + ++ PT+SP GR R G Sbjct: 166 TPDGSAIAFTSSDDDTPQAIDLVDAHGNRRTLVTVSEGDIAGPTFSPDGRLGYVHRTPSG 225 Query: 413 DT 414 Sbjct: 226 TA 227 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 8/196 (4%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + ++ + + ++ D ++S+ + A RLT+ L +S Sbjct: 23 REVVVTQATNASAAVAPGAGSVVV----DLLNVLWSIPIGGGAAVRLTDVLQEAAEPDFS 78 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S+IVF+S ++G L + +G R++ +P +SP G +AF + + Sbjct: 79 PDGSRIVFQSYQDGNFHLCLADRDGRGLTRLTS-GPTDQREPRFSPDGTRVAFAAETDGR 137 Query: 371 FAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + I V+ + S +A P W+P G ++ F+ D DT + +D +G T Sbjct: 138 YGIHVLTLATGEIAAWTSGSAQEAQPVWTPDGSAIAFTSSDD-DTPQAIDLVDAHGNRRT 196 Query: 430 LIN-TPAYASDPQWVG 444 L+ + + P + Sbjct: 197 LVTVSEGDIAGPTFSP 212 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 36/248 (14%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P SP+ +VA+ D + R P+ + + P +S +G+ + Sbjct: 306 IVGPVLSPDGTRVAFQALGD-------IWVVRDGEEPEAVVSDGGYNTGPAWSPDGRTLV 358 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + +D++ DL++ RLT+ A +SPD S + F S R ++ + Sbjct: 359 YAGDRAGTLDLWLHDLETGQDRRLTDLEGDETGAVFSPDGSAVAFLSGRS----VHTVDV 414 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKDGSQERLL 386 +++ A P +S G + +F + + ++ + Sbjct: 415 ASGAVRKVVGPLNAP-GRPSFSADGTRVCLAGFVPTTARFREGENLVLTVELATGEMHYT 473 Query: 387 V-------EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS--IDLNGRN--ETLINTPA 435 + P +SP G S+ F G L+ +D GR E Sbjct: 474 HAVPGRSLSNRIDSGPVYSPDGTSMAFV------VGGVLWVSGVDDRGRPSGEARRLGDE 527 Query: 436 YASDPQWV 443 A+ P W Sbjct: 528 TAASPSWS 535 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 93/313 (29%), Gaps = 69/313 (22%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N L + G LT + EP FSP+ ++ + +Y D + + R R Sbjct: 50 NVLWSIPIGGGAAVRLTDVLQEAA-EPDFSPDGSRIVFQSYQDGNFH--LCLADRDGRGL 106 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 R+ + + PRFS +G R + + D I+ + L + T+ ++ Sbjct: 107 TRLTSGPTDQREPRFSPDGTRVAFAAETDGRYGIHVLTLATGEIAAWTSGSAQEAQPVWT 166 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S I F S + Q + +++ + E P +SP G + + + Sbjct: 167 PDGSAIAFTSSDDDTPQAIDLVDAHGNRRTLVTVSEGDIAGPTFSPDGR-LGYVHRTPSG 225 Query: 371 FAI--------------------------GVMKKDGSQERLLVEDSNLQ----------- 393 A+ + DG R + + Sbjct: 226 TALVLDGKVVSDEGEDVFPFSARWLSADELLYTADGRIRRRALGGARSDIPFTAEVSVRE 285 Query: 394 ----------------------APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 P SP G + F ++ + E ++ Sbjct: 286 VSPPPTRRDFDSTADRAVKGIVGPVLSPDGTRVAF------QALGDIWVVRDGEEPEAVV 339 Query: 432 NTPAYASDPQWVG 444 + Y + P W Sbjct: 340 SDGGYNTGPAWSP 352 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 24/249 (9%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 +L + V+ + V+ RDG + S P +SP+ + + YA D Sbjct: 308 GPVLSPDGTRVAFQALGDIWVV-RDGEEPEAVV-SDGGYNTGPAWSPDGRTLVYAG-DRA 364 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 L ++L D + +R+ + FS +G +++VD+ S A Sbjct: 365 GTLDLWLHDLETGQD-RRLTDLEGDETGAVFSPDGSAVAFLS----GRSVHTVDVASGAV 419 Query: 295 ERLTNTLFINISASYSPDSSQIV---FE----SDREGKEQLYVMQSNGSDQKRISQDKEA 347 ++ L S+S D +++ F REG+ + ++ + Sbjct: 420 RKVVGPLNAPGRPSFSADGTRVCLAGFVPTTARFREGENLVLTVELATGEMHYTHAVPGR 479 Query: 348 SYFD-----PVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSNLQAPTWSPS 400 S + PV+SP G +AF G + GV + + R L D +P+WS Sbjct: 480 SLSNRIDSGPVYSPDGTSMAFV-VGGVLWVSGVDDRGRPSGEARRL-GDETAASPSWSED 537 Query: 401 GRSLIFSRK 409 R+L++ Sbjct: 538 SRTLLYLSN 546 >gi|256841886|ref|ZP_05547392.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736780|gb|EEU50108.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1079 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 138/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W ++ S I + + DI+ G++ F S Sbjct: 178 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENITNNEAQDIFPMWIGDEIYFLS 237 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + + I+FE N + + Sbjct: 238 DRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFPSSFGNTIVFE-----NGGYIYKMDAASK 292 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + I + I + S G+R +++ + +++++ + Sbjct: 293 KPEKVNVTLASDNVYARSEIKDGSKYITSASLSPKGERMVVTARG----EVFNIPVDKGV 348 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T A +SPD I + SD G+ +LY+ S G + +++++ + Sbjct: 349 TKNITRTPGAHERDAQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF 408 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q + + + ++SP L +SR Sbjct: 409 QWSPDSKKIVYTDRKN---RINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVS 465 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + S +Y D+ G+ E + +P +++D +++ F Sbjct: 466 DNNF-SIVYVYDIAGKKEYPVTDKWYESYSPVFSTDGKYLVF 506 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 33/339 (9%) Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + + ITN ++ F W + + + +++ K ++ Sbjct: 208 PEKKSVENITNNEAQDIFPMW--------IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVT 259 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 F D + S G F + S + + D Sbjct: 260 NFTE------------YDVKFPSSFGNTIVFENGGYIYKMDAASKKPEKVNVTLASDNVY 307 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + + SP +++ + V+ + + Sbjct: 308 ARSEIKDGSKYITSASLSPKGERMVVTARGE-----VFNIPVDKGVTKNITRTPGAHERD 362 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFES 320 ++S +GK ++Y D + +LT N +I +SPDS +IV+ Sbjct: 363 AQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF-QWSPDSKKIVYT- 420 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKD 379 DR K ++ ++ + ISQ + +SP + + +++ S F+I V Sbjct: 421 DR--KNRINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVSDNNFSIVYVYDIA 478 Query: 380 GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSK 417 G +E + + +P +S G+ L+F+ +D + Sbjct: 479 GKKEYPVTDKWYESYSPVFSTDGKYLVFTSARDFNPTYS 517 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 36 NGSEIVFSYAGD----LYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQYDGNTE 91 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M S+G + RI+ D P W+P G+ I + + F + Sbjct: 92 VYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLY 151 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 152 TVNKEGGLSEVVPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 208 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 209 EKKSVENITNNEAQDIFPMWIG 230 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 99/282 (35%), Gaps = 52/282 (18%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M + P Sbjct: 47 DLYKVPATGGEAQRLT-SYVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPS-SGGEPL 103 Query: 252 RIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAMDIYSVDLQSN--ATE 295 RI + + P ++ +G + + + +Y+V+ + Sbjct: 104 RITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLYTVNKEGGLSEVV 163 Query: 296 RLTNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQD 344 L F SYSPD Q+ + R K + ++V + I+ + Sbjct: 164 PLPEGGFC----SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENIT-N 218 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGR 402 EA P+W GD I F + V Q + + +++ P S G Sbjct: 219 NEAQDIFPMW--IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFP--SSFGN 274 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +++F + G +Y +D + N TL + YA Sbjct: 275 TIVF------ENGGYIYKMDAASKKPEKVNVTLASDNVYARS 310 >gi|154687335|ref|YP_001422496.1| YuxL [Bacillus amyloliquefaciens FZB42] gi|154353186|gb|ABS75265.1| YuxL [Bacillus amyloliquefaciens FZB42] Length = 658 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 106/314 (33%), Gaps = 68/314 (21%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGA-NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R +V +V S +M D I D PR+SP+ +++A+ + + Sbjct: 27 RAAYVRTTVNHKRDSYSSAIMIYDTESGISNPWTFGDNRNTSPRWSPDGRRLAFVSDREN 86 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ----------------- 277 + ++Y++D K+ + + P ++ +G+ L+SV Sbjct: 87 GVPQLYIID-AAGGEAKQAADIPWGVSDPIWAPDGRSVLVSVSLTSAERADEKEKKKHDE 145 Query: 278 ------------KDE-------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 +D + + L++ ++LT+ + A++SPD Q+ F Sbjct: 146 YEPVDIQSLTYKRDGKGLLNGSWAQLVLIHLETGEIQQLTDHEADHYDAAFSPDGRQLAF 205 Query: 319 ES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + D +Y+M K+I+ S+ V+SP G IA E Sbjct: 206 TANLCELGDAGKPSDVYLMNLADGSLKQITP-HRGSFGSCVFSPDGSYIAMLGHENEFRN 264 Query: 373 -----IGVMKKDGSQERLLVE----------------DSNLQAPTWSPSGRSLIFSRKKD 411 + + L + P W+ G+ + Sbjct: 265 ATLEKAWLYDVKTERLSCLTDMLDVHLSDALIADSIIGGVTPRPVWTNDGQGFYVLGSEQ 324 Query: 412 GDTGSKLYSIDLNG 425 G TG +Y I ++G Sbjct: 325 GSTG--IYYISIDG 336 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 88/240 (36%), Gaps = 49/240 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM----ILAPRFSSNG 269 + +P+++P+ ++ AY Y I I N + +PR+S +G Sbjct: 16 VTDPQYAPDGRRAAYVRTTVNHKRDSYSSAIMIYDTESGISNPWTFGDNRNTSPRWSPDG 75 Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV----------- 317 +R + + +Y +D ++ + + ++PD ++ Sbjct: 76 RRLAFVSDRENGVPQLYIIDAAGGEAKQAADIPWGVSDPIWAPDGRSVLVSVSLTSAERA 135 Query: 318 ------------------FESDREGKE-------QLYVMQSNGSDQKRISQDKEASYFDP 352 R+GK QL ++ + ++++ D EA ++D Sbjct: 136 DEKEKKKHDEYEPVDIQSLTYKRDGKGLLNGSWAQLVLIHLETGEIQQLT-DHEADHYDA 194 Query: 353 VWSPQGDLIAFTKF------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLI 405 +SP G +AFT +G+ + +M DGS +++ + + +SP G + Sbjct: 195 AFSPDGRQLAFTANLCELGDAGKPSDVYLMNLADGSLKQITPHRGSFGSCVFSPDGSYIA 254 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 94/243 (38%), Gaps = 56/243 (23%) Query: 259 MILAPRFSSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+++ +G+RA + + I D +S + T N S +SPD Sbjct: 15 SVTDPQYAPDGRRAAYVRTTVNHKRDSYSSAIMIYDTESGISNPWTFGDNRNTSPRWSPD 74 Query: 313 SSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------ 365 ++ F SDRE G QLY++ + G + K+ + D DP+W+P G + + Sbjct: 75 GRRLAFVSDRENGVPQLYIIDAAGGEAKQ-AADIPWGVSDPIWAPDGRSVLVSVSLTSAE 133 Query: 366 ------------------------------FSGEKFAIGVMKKDGSQERLLVE-DSNLQA 394 +G + ++ + + + L + +++ Sbjct: 134 RADEKEKKKHDEYEPVDIQSLTYKRDGKGLLNGSWAQLVLIHLETGEIQQLTDHEADHYD 193 Query: 395 PTWSPSGRSLIFSRK--KDGDTG--SKLYSIDL-NGRNETLINTPA------YASDPQWV 443 +SP GR L F+ + GD G S +Y ++L +G + + ++ D ++ Sbjct: 194 AAFSPDGRQLAFTANLCELGDAGKPSDVYLMNLADGSLKQITPHRGSFGSCVFSPDGSYI 253 Query: 444 GFM 446 + Sbjct: 254 AML 256 >gi|298376894|ref|ZP_06986848.1| exported tricorn protease [Bacteroides sp. 3_1_19] gi|298265878|gb|EFI07537.1| exported tricorn protease [Bacteroides sp. 3_1_19] Length = 1077 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 138/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W ++ S I + + DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENITNNEAQDIFPMWIGDEIYFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + + I+FE N + + Sbjct: 236 DRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFPSSFGNTIVFE-----NGGYIYKMDAASK 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + I + I + S G+R +++ + +++++ + Sbjct: 291 KPEKVNVTLASDNVYARSEIKDGSKYITSASLSPKGERMVVTARG----EVFNIPVDKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T A +SPD I + SD G+ +LY+ S G + +++++ + Sbjct: 347 TKNITRTPGAHERDAQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q + + + ++SP L +SR Sbjct: 407 QWSPDSKKIVYTDRKN---RINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVS 463 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + S +Y D+ G+ E + +P +++D +++ F Sbjct: 464 DNNF-SIVYVYDIAGKKEYPVTDKWYESYSPVFSTDGKYLVF 504 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 33/339 (9%) Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + + ITN ++ F W + + + +++ K ++ Sbjct: 206 PEKKSVENITNNEAQDIFPMW--------IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVT 257 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 F D + S G F + S + + D Sbjct: 258 NFTE------------YDVKFPSSFGNTIVFENGGYIYKMDAASKKPEKVNVTLASDNVY 305 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + + SP +++ + V+ + + Sbjct: 306 ARSEIKDGSKYITSASLSPKGERMVVTARGE-----VFNIPVDKGVTKNITRTPGAHERD 360 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFES 320 ++S +GK ++Y D + +LT N +I +SPDS +IV+ Sbjct: 361 AQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF-QWSPDSKKIVYT- 418 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKD 379 DR K ++ ++ + ISQ + +SP + + +++ S F+I V Sbjct: 419 DR--KNRINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVSDNNFSIVYVYDIA 476 Query: 380 GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSK 417 G +E + + +P +S G+ L+F+ +D + Sbjct: 477 GKKEYPVTDKWYESYSPVFSTDGKYLVFTSARDFNPTYS 515 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGSEIVFSYAGD----LYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M S+G + RI+ D P W+P G+ I + + F + Sbjct: 90 VYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLY 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVNKEGGLSEVVPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 207 EKKSVENITNNEAQDIFPMWIG 228 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 99/282 (35%), Gaps = 52/282 (18%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M + P Sbjct: 45 DLYKVPATGGEAQRLT-SYVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPS-SGGEPL 101 Query: 252 RIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAMDIYSVDLQSN--ATE 295 RI + + P ++ +G + + + +Y+V+ + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLYTVNKEGGLSEVV 161 Query: 296 RLTNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQD 344 L F SYSPD Q+ + R K + ++V + I+ + Sbjct: 162 PLPEGGFC----SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENIT-N 216 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGR 402 EA P+W GD I F + V Q + + +++ P S G Sbjct: 217 NEAQDIFPMW--IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFP--SSFGN 272 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +++F + G +Y +D + N TL + YA Sbjct: 273 TIVF------ENGGYIYKMDAASKKPEKVNVTLASDNVYARS 308 >gi|255015923|ref|ZP_05288049.1| putative exported tricorn protease [Bacteroides sp. 2_1_7] Length = 1077 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 138/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W ++ S I + + DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENITNNEAQDIFPMWIGDEIYFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + + I+FE N + + Sbjct: 236 DRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFPSSFGNTIVFE-----NGGYIYKMDAASK 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + I + I + S G+R +++ + +++++ + Sbjct: 291 KPEKVNVTLASDNVYARSEIKDGSKYITSASLSPKGERMVVTARG----EVFNIPVDKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T A +SPD I + SD G+ +LY+ S G + +++++ + Sbjct: 347 TKNITRTPGAHERDAQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q + + + ++SP L +SR Sbjct: 407 QWSPDSKKIVYTDRKN---RINLLDVSNKQLTNISQSLLGEARNVSFSPDNNWLTYSRVS 463 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + S +Y D+ G+ E + +P +++D +++ F Sbjct: 464 DNNF-SIVYVYDIAGKKEYPVTDKWYESYSPVFSTDGKYLVF 504 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 33/339 (9%) Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + + ITN ++ F W + + + +++ K ++ Sbjct: 206 PEKKSVENITNNEAQDIFPMW--------IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVT 257 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 F D + S G F + S + + D Sbjct: 258 NFTE------------YDVKFPSSFGNTIVFENGGYIYKMDAASKKPEKVNVTLASDNVY 305 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + + SP +++ + V+ + + Sbjct: 306 ARSEIKDGSKYITSASLSPKGERMVVTARGE-----VFNIPVDKGVTKNITRTPGAHERD 360 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFES 320 ++S +GK ++Y D + +LT N +I +SPDS +IV+ Sbjct: 361 AQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF-QWSPDSKKIVYT- 418 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKD 379 DR K ++ ++ + ISQ + +SP + + +++ S F+I V Sbjct: 419 DR--KNRINLLDVSNKQLTNISQSLLGEARNVSFSPDNNWLTYSRVSDNNFSIVYVYDIA 476 Query: 380 GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSK 417 G +E + + +P +S G+ L+F+ +D + Sbjct: 477 GKKEYPVTDKWYESYSPVFSTDGKYLVFTSARDFNPTYS 515 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGSEIVFSYAGD----LYKVQATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M S+G + RI+ D P W+P G+ I + + F + Sbjct: 90 VYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLY 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVNKEGGLSEVVPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 207 EKKSVENITNNEAQDIFPMWIG 228 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 99/282 (35%), Gaps = 52/282 (18%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M + P Sbjct: 45 DLYKVQATGGEAQRLT-SYVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPS-SGGEPL 101 Query: 252 RIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAMDIYSVDLQSN--ATE 295 RI + + P ++ +G + + + +Y+V+ + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLYTVNKEGGLSEVV 161 Query: 296 RLTNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQD 344 L F SYSPD Q+ + R K + ++V + I+ + Sbjct: 162 PLPEGGFC----SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENIT-N 216 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGR 402 EA P+W GD I F + V Q + + +++ P S G Sbjct: 217 NEAQDIFPMW--IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFP--SSFGN 272 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +++F + G +Y +D + N TL + YA Sbjct: 273 TIVF------ENGGYIYKMDAASKKPEKVNVTLASDNVYARS 308 >gi|150009318|ref|YP_001304061.1| putative exported tricorn protease [Parabacteroides distasonis ATCC 8503] gi|301311118|ref|ZP_07217047.1| putative exported tricorn protease [Bacteroides sp. 20_3] gi|149937742|gb|ABR44439.1| putative exported tricorn protease [Parabacteroides distasonis ATCC 8503] gi|300831181|gb|EFK61822.1| putative exported tricorn protease [Bacteroides sp. 20_3] Length = 1077 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 63/342 (18%), Positives = 139/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + S S I + + DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNSEKKSVENITNNEAQDIFPMWIGDEIYFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + + I+FE N + + Sbjct: 236 DRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFPSSFGNTIVFE-----NGGYIYKMDAASK 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + +V + + + I + I + S G+R +++ + +++++ + Sbjct: 291 EPEKVNVTLASDNVYARSEIKDGSKYITSASLSPKGERMVVTARG----EVFNIPVDKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T A +SPD I + SD G+ +LY+ S G + +++++ + Sbjct: 347 TKNITRTPGAHERDAQWSPDGKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q + + + ++SP L +SR Sbjct: 407 QWSPDSKKIVYTDRKN---RINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVS 463 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + S +Y D+ G+ E + +P +++D +++ F Sbjct: 464 DNNF-SIVYVYDIAGKKEYPVTDKWYESYSPVFSTDGKYLVF 504 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 110/333 (33%), Gaps = 33/333 (9%) Query: 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSP 148 + ITN ++ F W + + + +++ K ++ F Sbjct: 212 ENITNNEAQDIFPMW--------IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVTNFTE-- 261 Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 D + S G F + S + + D R Sbjct: 262 ----------YDVKFPSSFGNTIVFENGGYIYKMDAASKEPEKVNVTLASDNVYARSEIK 311 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + + SP +++ + V+ + + ++S + Sbjct: 312 DGSKYITSASLSPKGERMVVTARGE-----VFNIPVDKGVTKNITRTPGAHERDAQWSPD 366 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFESDREGKE 326 GK ++Y D + +LT N +I +SPDS +IV+ DR K Sbjct: 367 GKHIAYISDATGETELYLQDSEGGEPTQLTKNNDTYIRTF-QWSPDSKKIVYT-DR--KN 422 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKDGSQERL 385 ++ ++ + ISQ + +SP + + +++ S F+I V G +E Sbjct: 423 RINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVSDNNFSIVYVYDIAGKKEYP 482 Query: 386 LVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSK 417 + + +P +S G+ L+F+ +D + Sbjct: 483 VTDKWYESYSPVFSTDGKYLVFTSARDFNPTYS 515 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGSEIVFSYAGD----LYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M S+G + RI+ D P W+P G+ I + + F + Sbjct: 90 VYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLY 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVNKEGGLSEVVPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNS 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 207 EKKSVENITNNEAQDIFPMWIG 228 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 100/282 (35%), Gaps = 52/282 (18%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M + P Sbjct: 45 DLYKVPATGGEAQRLT-SYVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPS-SGGEPL 101 Query: 252 RIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAMDIYSVDLQSN--ATE 295 RI + + P ++ +G + + + +Y+V+ + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLYTVNKEGGLSEVV 161 Query: 296 RLTNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQD 344 L F SYSPD Q+ + R K + ++V S + I+ + Sbjct: 162 PLPEGGFC----SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNSEKKSVENIT-N 216 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGR 402 EA P+W GD I F + V Q + + +++ P S G Sbjct: 217 NEAQDIFPMW--IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFP--SSFGN 272 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +++F + G +Y +D + N TL + YA Sbjct: 273 TIVF------ENGGYIYKMDAASKEPEKVNVTLASDNVYARS 308 >gi|316967493|gb|EFV51909.1| conserved hypothetical protein [Trichinella spiralis] Length = 382 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 99/269 (36%), Gaps = 35/269 (13%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF----SPNQQKVAYATYDDEDILRVY 240 G + + D ++ Y T S+ SP +Q ++ + + Sbjct: 89 SDGRGQTTCSFFFPDNSSFIYSTTSKAGAECPKSVCEGSSPPKQCNNSYIWNIFNGFNIL 148 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT---ERL 297 L T + + S +GK + + + +D++ + L +L Sbjct: 149 L--TDSTGKTHYLTDDSFYNAEGAVSPDGKSIVFTSTRGGDLDLWLMRLNGTEVVNITQL 206 Query: 298 TNTLFINISASYSPDSSQIVFESDREGK--------------------EQLYVMQSNGSD 337 T+ + A +SP +IV+ + +++ M ++GSD Sbjct: 207 TDITGYDGGAFFSPLGDKIVYRAYHPKTAEEITNYFQLLNLSITKPLHMEIFTMNADGSD 266 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQ-ERLLVEDSNLQ 393 QK+++ AS+ P + P G I F+ F + ++ +DG+ E++ Sbjct: 267 QKQLTNFGYASW-APYFYPDGSKIIFSSNHHGNHSVFNLFLIDQDGNNLEQITTNPGLDM 325 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSID 422 P +S + LIF ++G+ G ++ D Sbjct: 326 FPMFSYDKKKLIFVSNRNGN-GFNVFMAD 353 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 85/262 (32%), Gaps = 52/262 (19%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI---------- 284 +R + P+ I + R F + + S + Sbjct: 70 PRIRSAWQSPNLTAGPQLISDGRGQTTCSFFFPDNSSFIYSTTSKAGAECPKSVCEGSSP 129 Query: 285 -----------------YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 + + T LT+ F N + SPD IVF S R G Sbjct: 130 PKQCNNSYIWNIFNGFNILLTDSTGKTHYLTDDSFYNAEGAVSPDGKSIVFTSTRGGDLD 189 Query: 328 LYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFSGE---------------- 369 L++M+ NG++ I+Q + +SP GD I + + + Sbjct: 190 LWLMRLNGTEVVNITQLTDITGYDGGAFFSPLGDKIVYRAYHPKTAEEITNYFQLLNLSI 249 Query: 370 ----KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGD-TGSKLYSIDL 423 I M DGS ++ L AP + P G +IFS G+ + L+ ID Sbjct: 250 TKPLHMEIFTMNADGSDQKQLTNFGYASWAPYFYPDGSKIIFSSNHHGNHSVFNLFLIDQ 309 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 +G N E + P P + Sbjct: 310 DGNNLEQITTNPGLDMFPMFSY 331 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 27/193 (13%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H ++DD + + G I+F S L +M +G + +T D + Sbjct: 157 HYLTDDSFYNAEGAVSPDGKSIVFTSTRGGD----LDLWLMRLNGTEVVNITQLTDITGY 212 Query: 216 EPR--FSPNQQKVAYATYDDEDILRV----YLMDTRI--------------DRAPKRIGN 255 + FSP K+ Y Y + + L++ I K++ N Sbjct: 213 DGGAFFSPLGDKIVYRAYHPKTAEEITNYFQLLNLSITKPLHMEIFTMNADGSDQKQLTN 272 Query: 256 FRSMILAPRFSSNGKRALISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPD 312 F AP F +G + + S +++ +D N E++T +++ +S D Sbjct: 273 FGYASWAPYFYPDGSKIIFSSNHHGNHSVFNLFLIDQDGNNLEQITTNPGLDMFPMFSYD 332 Query: 313 SSQIVFESDREGK 325 +++F S+R G Sbjct: 333 KKKLIFVSNRNGN 345 >gi|158334384|ref|YP_001515556.1| WD repeat-containing protein [Acaryochloris marina MBIC11017] gi|158304625|gb|ABW26242.1| WD-repeat protein [Acaryochloris marina MBIC11017] Length = 1187 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 63/378 (16%), Positives = 132/378 (34%), Gaps = 57/378 (15%) Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGA----------QVLVTGRVIKEG--- 120 + S ++ Q+I + + W++ G +++ +G Sbjct: 820 EHSGAIRSVAFSPDGQRIVSGSYDNTLRLWDAQGNPIGQPWTGHTNYVLSVAFSPDGQRI 879 Query: 121 -KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 RLWD + +P HT + ++ G Sbjct: 880 VSGSYDNTLRLWDAQ-----------GNPIGQPWTGHT--NYVWSVAFSPDG-------- 918 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + +VSG N+L + D G I + FSP+ Q++ +YD+ + Sbjct: 919 --QRIVSGSYDNTLRLWDAQGNPIGQPWTGHTNYVLSVAFSPDGQRIVSGSYDN----TL 972 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LT 298 L D + + + + + + FS +G+R + S D + ++ D Q N + T Sbjct: 973 RLWDAQGNLIGQPWTGHTNYVRSVAFSPDGQRIV-SGSYDNTLRLW--DAQGNPIGQPWT 1029 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 S ++SPD +IV SD + L + + G+ + + +SP G Sbjct: 1030 GHTNYVWSVAFSPDGQRIVSGSD---DKTLRLWDAQGNPIGQPWTGHTNYVWSVAFSPDG 1086 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 I + + G+ +++++ +SP G+ ++ D Sbjct: 1087 QRIVSGSSDNT---LRLWDAQGNPIGQPWTGHTNSVRSVAFSPDGQRIVSGSD---DKTL 1140 Query: 417 KLYSIDLNGRNETLINTP 434 +L+ +D G+ ++ T Sbjct: 1141 RLWEVD-TGKCLAVVQTG 1157 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 103/298 (34%), Gaps = 43/298 (14%) Query: 115 RVIKEGK----DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 V +G+ ++WD + + W + H S I Sbjct: 787 AVSPDGQRWAIGEDNGRLQMWDASTGRVL-----------WIRQEH--SGAIRSVAFSPD 833 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G + +VSG N+L + D G I + FSP+ Q++ + Sbjct: 834 G----------QRIVSGSYDNTLRLWDAQGNPIGQPWTGHTNYVLSVAFSPDGQRIVSGS 883 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 YD+ + L D + + + + + + FS +G+R + S D + ++ D Q Sbjct: 884 YDN----TLRLWDAQGNPIGQPWTGHTNYVWSVAFSPDGQRIV-SGSYDNTLRLW--DAQ 936 Query: 291 SNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 N + T +S ++SPD +IV S L + + G+ + Sbjct: 937 GNPIGQPWTGHTNYVLSVAFSPDGQRIVSGSY---DNTLRLWDAQGNLIGQPWTGHTNYV 993 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL--LVEDSNLQAPTWSPSGRSLI 405 +SP G I + + + G+ + + + +SP G+ ++ Sbjct: 994 RSVAFSPDGQRIVSGSYDNT---LRLWDAQGNPIGQPWTGHTNYVWSVAFSPDGQRIV 1048 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G L + D + ++ + FSP+ Q++ +YD+ + L D + Sbjct: 798 GEDNGRLQMWDASTGRVLWIRQEHSGAIRSVAFSPDGQRIVSGSYDN----TLRLWDAQG 853 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINI 305 + + + +L+ FS +G+R + S D + ++ D Q N + T Sbjct: 854 NPIGQPWTGHTNYVLSVAFSPDGQRIV-SGSYDNTLRLW--DAQGNPIGQPWTGHTNYVW 910 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S ++SPD +IV S L + + G+ + +SP G I Sbjct: 911 SVAFSPDGQRIVSGSY---DNTLRLWDAQGNPIGQPWTGHTNYVLSVAFSPDGQRIVSGS 967 Query: 366 FSGEKFAIGVMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + + G+ + + +++ +SP G+ ++ D +L+ Sbjct: 968 YDNT---LRLWDAQGNLIGQPWTGHTNYVRSVAFSPDGQRIVSGSY---DNTLRLWD 1018 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 18/224 (8%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G N+ L ++ E + + + ++ + + R A R ++ Sbjct: 726 GGNLTQLLVDKNPWALE---THDLSDTHLQGVNFANVSLLQVNLARASLAEARFNKVLAV 782 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVF 318 I S +G+R I + + + ++ D + + S ++SPD +IV Sbjct: 783 IYTIAVSPDGQRWAI-GEDNGRLQMW--DASTGRVLWIRQEHSGAIRSVAFSPDGQRIVS 839 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 S L + + G+ + +SP G I + + + Sbjct: 840 GSY---DNTLRLWDAQGNPIGQPWTGHTNYVLSVAFSPDGQRIVSGSYDNT---LRLWDA 893 Query: 379 DGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 G+ + + + +SP G+ ++ D +L+ Sbjct: 894 QGNPIGQPWTGHTNYVWSVAFSPDGQRIVSGSY---DNTLRLWD 934 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 43/212 (20%) Query: 88 KQKITNPDSIPRFQDWNSLGA----------QVLVTGRVIKEG----KDRLRVEFRLWDV 133 Q+I + + W++ G + + +G RLWD Sbjct: 960 GQRIVSGSYDNTLRLWDAQGNLIGQPWTGHTNYVRSVAFSPDGQRIVSGSYDNTLRLWD- 1018 Query: 134 KDRKQIIGKKFFS----------SPASWRKIAHTISDDIYQSITGEKG-----DFNSRIL 178 + IG+ + SP R ++ SDD + +G + Sbjct: 1019 -AQGNPIGQPWTGHTNYVWSVAFSPDGQRIVSG--SDDKTLRLWDAQGNPIGQPWTGHTN 1075 Query: 179 FV--------SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 +V + +VSG N+L + D G I + FSP+ Q++ + Sbjct: 1076 YVWSVAFSPDGQRIVSGSSDNTLRLWDAQGNPIGQPWTGHTNSVRSVAFSPDGQRIVSGS 1135 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 D LR++ +DT A + G + + Sbjct: 1136 DD--KTLRLWEVDTGKCLAVVQTGLCGGLDFS 1165 >gi|262194671|ref|YP_003265880.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078018|gb|ACY13987.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1583 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 134/346 (38%), Gaps = 29/346 (8%) Query: 88 KQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS 147 Q+I + + WN+ GA V V + D L F D + I+ + Sbjct: 1180 GQRIVSASFDNSVRIWNADGAGVPVV--LRGHRDDVLSARFS----PDGRDIVSASKDGT 1233 Query: 148 PASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYL 206 W AH DD + G +G S VVS S + + DG + Sbjct: 1234 VRVW--GAH---DDNTAVLRGHRGRLYSATFSPDGARVVSASHDTSARIWNADGTGHAIV 1288 Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 D+ + FSP+ Q+V A++D V + + P + + + FS Sbjct: 1289 LNGHDEGVTHASFSPDGQRVVTASFDK----SVRIWNADGTGDPMILRGHDDWVTSAVFS 1344 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+R S D+++ I+ D + L +T I +S S+SPD ++ S + Sbjct: 1345 PDGQRVA-SASFDKSIRIWHADGSGDPVVLLGHTAQI-LSVSFSPDGRRVASAS---WDK 1399 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + + ++GS + I + E + +SP G +A + + + DGS E +L Sbjct: 1400 TVRIWNADGSGETTILGEHEDTVRWVSFSPDGQRVASASWDQS---VRIWNADGSGEPVL 1456 Query: 387 VED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + + +SP G+ + + D +++ D G L Sbjct: 1457 LRGHEGLVLSAEFSPDGQLVASASM---DKTIRIWRADGTGSPVIL 1499 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 99/246 (40%), Gaps = 17/246 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 V S S+ V + DG+ + + + FSP+ +++ A++D V + Sbjct: 971 RRVASASWDKSVRVWNADGSGVPLVLRGHTDKVMAASFSPDGRRIVSASWDQ----TVRV 1026 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P + +++ RFS +G+R + S D ++ I++ D S L Sbjct: 1027 WNADGSGRPIVLRGHEKAVMSARFSPDGRRIV-SASWDRSVRIWNAD-GSGQPIVLRGHE 1084 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +A +SPD +++V S + + V +++GS + + +SP I Sbjct: 1085 DAVTAAVFSPDGTRVVSASH---DDSVRVWRADGSGKPSVLLGHTDDVMAASFSPDNRRI 1141 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLY 419 + V DG+ E LL+ + + +SP G+ ++ D +++ Sbjct: 1142 VSASKDQS---LRVWPADGTGEPLLLRGHQDEVFSACFSPDGQRIV---SASFDNSVRIW 1195 Query: 420 SIDLNG 425 + D G Sbjct: 1196 NADGAG 1201 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 101/234 (43%), Gaps = 15/234 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +VS ++ V + DG+ + ++ + RFSP+ +++ A++D V + Sbjct: 1013 RRIVSASWDQTVRVWNADGSGRPIVLRGHEKAVMSARFSPDGRRIVSASWDR----SVRI 1068 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P + + A FS +G R ++S D+++ ++ D S L Sbjct: 1069 WNADGSGQPIVLRGHEDAVTAAVFSPDGTR-VVSASHDDSVRVWRAD-GSGKPSVLLGHT 1126 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++AS+SPD+ +IV S + L V ++G+ + + + + F +SP G I Sbjct: 1127 DDVMAASFSPDNRRIVSASK---DQSLRVWPADGTGEPLLLRGHQDEVFSACFSPDGQRI 1183 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGD 413 F + + DG+ +++ + +SP GR ++ S KDG Sbjct: 1184 VSASFDNS---VRIWNADGAGVPVVLRGHRDDVLSARFSPDGRDIV-SASKDGT 1233 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + +++ FSP+ ++VA A++D V + + P + ++A Sbjct: 950 ARTVFTDHGNMVWYADFSPDGRRVASASWDK----SVRVWNADGSGVPLVLRGHTDKVMA 1005 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-D 321 FS +G+R + S D+ + +++ D S L +SA +SPD +IV S D Sbjct: 1006 ASFSPDGRRIV-SASWDQTVRVWNAD-GSGRPIVLRGHEKAVMSARFSPDGRRIVSASWD 1063 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 R + + ++GS Q + + E + V+SP G + + G Sbjct: 1064 RS----VRIWNADGSGQPIVLRGHEDAVTAAVFSPDGTRVVSASHDDSV-RVWRADGSGK 1118 Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 LL ++ A ++SP R ++ + K D +++ D G L Sbjct: 1119 PSVLLGHTDDVMAASFSPDNRRIVSASK---DQSLRVWPADGTGEPLLL 1164 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 13/238 (5%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + VV+ S+ + + DG + D + FSP+ Q+VA A++D + + Sbjct: 1306 QRVVTASFDKSVRIWNADGTGDPMILRGHDDWVTSAVFSPDGQRVASASFDK----SIRI 1361 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 P + + IL+ FS +G+R S D+ + I++ D S T L Sbjct: 1362 WHADGSGDPVVLLGHTAQILSVSFSPDGRRVA-SASWDKTVRIWNAD-GSGETTILGEHE 1419 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S+SPD ++ S + + + ++GS + + + E +SP G L+ Sbjct: 1420 DTVRWVSFSPDGQRVASAS---WDQSVRIWNADGSGEPVLLRGHEGLVLSAEFSPDGQLV 1476 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 A + I GS L D + ++ P G+ L+ + D +++ Sbjct: 1477 ASASMD-KTIRIWRADGTGSPVILRGHDEGVTHASFRPDGQGLVSASD---DWTIRIW 1530 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 103/277 (37%), Gaps = 14/277 (5%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 EK ++R +VS S+ + + DG+ + + + FSP+ +V Sbjct: 1041 HEKAVMSARFSPDGRRIVSASWDRSVRIWNADGSGQPIVLRGHEDAVTAAVFSPDGTRVV 1100 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 A++DD V + P + ++A FS + +R + S KD+++ ++ Sbjct: 1101 SASHDD----SVRVWRADGSGKPSVLLGHTDDVMAASFSPDNRRIV-SASKDQSLRVWPA 1155 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D + L SA +SPD +IV S + + ++G+ + + Sbjct: 1156 D-GTGEPLLLRGHQDEVFSACFSPDGQRIVSASF---DNSVRIWNADGAGVPVVLRGHRD 1211 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +SP G I G G + + R L + T+SP G ++ + Sbjct: 1212 DVLSARFSPDGRDIVSASKDGTVRVWGAHDDNTAVLR--GHRGRLYSATFSPDGARVVSA 1269 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 DT +++++ D G L + + Sbjct: 1270 SH---DTSARIWNADGTGHAIVLNGHDEGVTHASFSP 1303 >gi|254494925|ref|ZP_01052559.2| peptidase family S41 [Polaribacter sp. MED152] gi|213690507|gb|EAQ41987.2| peptidase family S41 [Polaribacter sp. MED152] Length = 1080 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 16/212 (7%) Query: 239 VYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 + + ++ + R N L P S GKRA+ + +I++V ++ L Sbjct: 282 IINVKGDLNYSRTRWMNVSGRNLTNPNISPKGKRAIFEYRG----EIFTVPKENGTWRNL 337 Query: 298 TNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 TN+ I + S +SP Q+ + SD+ G+ +L + NG++Q+ I YF P WSP Sbjct: 338 TNSSGIADRSPIWSPKGDQVAWFSDKNGEYELVLADQNGNNQEFIKLPNPTFYFQPDWSP 397 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-----NLQAPTWSPSGRSLIFSRKKD 411 G IA+T F I ++ + + D P +SP ++++++ D Sbjct: 398 NGKYIAYT---DTNFVIWIINLETKKIVKADADGFAHPNRAMNPKFSPDSDWIVYAKQND 454 Query: 412 GDTGSKLYSIDLNGRNETLINTP-AYASDPQW 442 S +Y+ L+ + I A A P W Sbjct: 455 NSFKS-VYAYQLSTQKIVQITDKIADAITPVW 485 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 25/203 (12%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R+ + +P+FS +G+ + Q D +D+Y V + +RLT +I Sbjct: 49 GGNAVRLTSDDGYESSPKFSKDGQWIAFTAQYDGNIDVYLVSINGGEPKRLTYHSASDIV 108 Query: 307 ASYSPDSSQIVFESDREGKE----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 ++PD +I+F S+REG+ + Y + + G + + D + F S IA Sbjct: 109 QGWTPDG-KILFRSNREGRPTQTNKFYTIGAEGGMPE--AFDIPRAAFGE-ISEDNKYIA 164 Query: 363 FT-----------KFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRK 409 +T G+ I ++ + ++ P W ++ + + Sbjct: 165 YTPITSWDAEWRNYRGGQAMPIWIVNLKTKELIKTPQLDGERHVNPVWFK--GNVYYISE 222 Query: 410 KDGDTGSKLYSIDLNGRNETLIN 432 + D + ++S +L + ET I Sbjct: 223 R--DYTANIWSYNLKTKKETQIT 243 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 28/182 (15%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A D++ + RLT+ S +S D I F + +G +Y++ NG + KR Sbjct: 39 AADLWKAPINGGNAVRLTSDDGYESSPKFSKDGQWIAFTAQYDGNIDVYLVSINGGEPKR 98 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----AIGVMKKDGSQERLLVEDSNLQAPT 396 ++ AS W+P G I F + + +G E ++ Sbjct: 99 LTY-HSASDIVQGWTPDGK-ILFRSNREGRPTQTNKFYTIGAEGGMP----EAFDIPRAA 152 Query: 397 W---SPSGRSLIFS---------RKKDGDTGSKLYSIDLNGRNETLINTPAYASD----P 440 + S + + ++ R G ++ ++L + + LI TP + P Sbjct: 153 FGEISEDNKYIAYTPITSWDAEWRNYRGGQAMPIWIVNL--KTKELIKTPQLDGERHVNP 210 Query: 441 QW 442 W Sbjct: 211 VW 212 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 108/322 (33%), Gaps = 51/322 (15%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R H+ SD I Q T + +ILF S N + +G R Sbjct: 98 RLTYHSASD-IVQGWTP-----DGKILFRSNREGRPTQTNKFYTIGAEGGMPEAFDIPRA 151 Query: 212 QILFEPRFSPNQQKVAYA----------TYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 S + + +AY Y + +++++ + K + Sbjct: 152 AFGE---ISEDNKYIAYTPITSWDAEWRNYRGGQAMPIWIVNLKTKELIKTPQLDGERHV 208 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P + G ++D +I+S +L++ ++T ++ + + + IV+ Sbjct: 209 NPVW-FKGN-VYYISERDYTANIWSYNLKTKKETQITFHKKFDVK-NIDANENGIVY--- 262 Query: 322 REGKEQLYVMQSNGSDQKRI---------------SQDKEASYFDPVWSPQGDLIAFTKF 366 E L+++ + +I + +P SP+G F Sbjct: 263 -EQAGFLHMLNPETKETNQIIINVKGDLNYSRTRWMNVSGRNLTNPNISPKGKRAIFEYR 321 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + K+ R L S ++P WSP G + + K+G+ +L D N Sbjct: 322 G----EIFTVPKENGTWRNLTNSSGIADRSPIWSPKGDQVAWFSDKNGE--YELVLADQN 375 Query: 425 GRNETLI--NTPAYASDPQWVG 444 G N+ I P + P W Sbjct: 376 GNNQEFIKLPNPTFYFQPDWSP 397 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 72/185 (38%), Gaps = 13/185 (7%) Query: 163 YQSITGEKGDFN-SRILFVSESVV----SGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 ++++T G + S I V + L + D++G N ++ F+P Sbjct: 334 WRNLTNSSGIADRSPIWSPKGDQVAWFSDKNGEYELVLADQNGNNQEFIKLPNPTFYFQP 393 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---FRSMILAPRFSSNGKRALI 274 +SPN + +AY + +++++ + K + + + P+FS + + Sbjct: 394 DWSPNGKYIAYTDTN----FVIWIINLETKKIVKADADGFAHPNRAMNPKFSPDSDWIVY 449 Query: 275 SVQKDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + Q D + +Y+ L + ++T+ + I+ + I + + Q + Sbjct: 450 AKQNDNSFKSVYAYQLSTQKIVQITDKIADAITPVWDASGKYIYTLASTDYGLQTGWLDM 509 Query: 334 NGSDQ 338 + D Sbjct: 510 SSYDP 514 Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 23/211 (10%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +G N LT S D P+FS + Q +A+ D +I VYL+ PK Sbjct: 41 DLWKAPINGGNAVRLT-SDDGYESSPKFSKDGQWIAFTAQYDGNI-DVYLVSIN-GGEPK 97 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAM----DIYSVDLQSNATERLTNTLFINISA 307 R+ + + ++ +GK L ++ Y++ + E Sbjct: 98 RLTYHSASDIVQGWTPDGK-ILFRSNREGRPTQTNKFYTIGAEGGMPEAFDIPRA--AFG 154 Query: 308 SYSPDSSQIVFE----------SDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSP 356 S D+ I + + R G+ ++++ + + Q + +PVW Sbjct: 155 EISEDNKYIAYTPITSWDAEWRNYRGGQAMPIWIVNLKTKELIKTPQLDGERHVNPVW-- 212 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + I +E + Sbjct: 213 FKGNVYYISERDYTANIWSYNLKTKKETQIT 243 >gi|20090399|ref|NP_616474.1| hypothetical protein MA1540 [Methanosarcina acetivorans C2A] gi|19915408|gb|AAM04954.1| predicted protein [Methanosarcina acetivorans C2A] Length = 618 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 106/283 (37%), Gaps = 23/283 (8%) Query: 160 DDIYQSITGEKG----DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 D+I ++I + +N + + L ++DRDG ++ LT + D++ Sbjct: 187 DEIKENILDIEWQTNLMWNPEGTKALIIMDKDPLNYQLYLIDRDGYVLQKLTDTSDRVET 246 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +S + +K+AY+ L +R +++A +S + R Sbjct: 247 AI-WSNDGKKIAYSITGPNKDEETGLWIINENRTEDNRLVDNGIVIA--WSPDDSRIFYV 303 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDREGKEQLYVMQSN 334 D +YS+ +L+ I+ S+SPD ++F + + +++ Sbjct: 304 ---DANSGLYSIKADGTDEVQLSTGFSRIDDVLSFSPDGKNLIFSTVNDEGVTMFLADQT 360 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G + K + + F P WSP+GD IA + + + DGS++ L+ Sbjct: 361 GKNAKVLEEFPGYIIFKPSWSPKGDKIAHAQDD----NLYTINPDGSEKSLIASAITDYE 416 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 W PSG + F ++ +G + + Sbjct: 417 --WHPSGDFISFISSDS------VFVASPDGSTKIQLTEDGDD 451 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 26/198 (13%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +SRI +V + L + DG + L+ +I FSP+ + + ++T +D Sbjct: 297 DSRIFYVDANSG-------LYSIKADGTDEVQLSTGFSRIDDVLSFSPDGKNLIFSTVND 349 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 E + + + + K + F +I P +S G + + ++Y+++ Sbjct: 350 EGV--TMFLADQTGKNAKVLEEFPGYIIFKPSWSPKGDKIA----HAQDDNLYTINPD-G 402 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE-----A 347 + + L + + + P I F S + ++V +GS + ++++D + A Sbjct: 403 SEKSLIASAITDYE--WHPSGDFISFIS----SDSVFVASPDGSTKIQLTEDGDDYRFLA 456 Query: 348 SYFDPVWSPQGDLIAFTK 365 + WSP G + Sbjct: 457 DRYLNGWSPDGSRLLVRN 474 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 94/320 (29%) Query: 210 RDQILFEPRFSPNQQKV---AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI------ 260 ++Q + + P+ ++ A L + + + + S Sbjct: 72 KEQPIISASWGPDSSRLLVEASINSQSGASLHAIYLLNADGSGIRELTSTPSNTKEKSLG 131 Query: 261 ---------LAPRFSSNGKRA------------LISVQKD-------------------- 279 +S +G R ++ D Sbjct: 132 LHILENPDTQETSWSPDGNRIGIFANINAVRDFYVTANPDKTLIKTAGKCNYTTVDEIKE 191 Query: 280 ----------------EAMDIYSVDLQ------------SNATERLTNTLFINISASYSP 311 + +D ++LT+T +A +S Sbjct: 192 NILDIEWQTNLMWNPEGTKALIIMDKDPLNYQLYLIDRDGYVLQKLTDTSDRVETAIWSN 251 Query: 312 DSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 D +I + +++ + L+++ N ++ R+ + WSP I + + Sbjct: 252 DGKKIAYSITGPNKDEETGLWIINENRTEDNRLVDNG----IVIAWSPDDSRIFYVDANS 307 Query: 369 EKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 ++I K DG+ E L + ++SP G++LIFS D G ++ D G+ Sbjct: 308 GLYSI---KADGTDEVQLSTGFSRIDDVLSFSPDGKNLIFSTV--NDEGVTMFLADQTGK 362 Query: 427 NETLINT-PAYASD-PQWVG 444 N ++ P Y P W Sbjct: 363 NAKVLEEFPGYIIFKPSWSP 382 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 22/88 (25%) Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEK-----FAIGVMKKDGSQERLLVEDSNL---- 392 + KE W P + + AI ++ DGS R L + Sbjct: 69 TGIKEQPIISASWGPDSSRLLVEASINSQSGASLHAIYLLNADGSGIRELTSTPSNTKEK 128 Query: 393 -------QAP-----TWSPSGRSL-IFS 407 + P +WSP G + IF+ Sbjct: 129 SLGLHILENPDTQETSWSPDGNRIGIFA 156 >gi|116626580|ref|YP_828736.1| periplasmic component of the Tol biopolymer transporter-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116229742|gb|ABJ88451.1| Periplasmic component of the Tol biopolymer transport system-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 507 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 26/211 (12%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FS + + +A+ + + + D + R+ + +S +GK Q+ Sbjct: 293 FSRDGKLLAF-SASTPASRQSQVWLANSDGSGARLMTPPAPSYFHGWSPDGKWLAFVGQR 351 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD- 337 D ++ V + A +RLT+ + YSPD I F SDR G ++ M +G+ Sbjct: 352 DGKFTLFRVPVTGGAEQRLTSH-GYDDGPEYSPDGKWIYFNSDRSGGWDIWRMPVDGAGT 410 Query: 338 ----QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---------KFAIGVMKKDGSQER 384 +R++ D+ +F P +SP G + F + + K G + Sbjct: 411 DDAKAQRVTSDELEDWF-PHFSPNGKWMLVFSFPKGTKTHNDKMEGVKLRLFKAPGKDLK 469 Query: 385 LLV---------EDSNLQAPTWSPSGRSLIF 406 + +WSP + Sbjct: 470 ASTPEVLQTFFGGQGTINVNSWSPDSGKFAY 500 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 18/242 (7%) Query: 188 IIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + V D + DQ++ P ++ + + + + L ++ Sbjct: 215 QQRYRSKVTIYDMATKATRVVYQADQVVEAPNWTRDGK---FLMINTGGSLYRIPVNPAG 271 Query: 247 DRAPKRIGNFRSM---ILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTL 301 + ++I FS +GK S ++ + + RL Sbjct: 272 ETKAEKIELGDGGYRCNNDHDFSRDGKLLAFSASTPASRQSQVWLANSDGSGA-RLMTPP 330 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + +SPD + F R+GK L+ + G ++R++ P +SP G I Sbjct: 331 APSYFHGWSPDGKWLAFVGQRDGKFTLFRVPVTGGAEQRLTSHGYDD--GPEYSPDGKWI 388 Query: 362 AFTKFSGEKFAIGVMKKDGSQE------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 F + I M DG+ R+ ++ P +SP+G+ ++ G Sbjct: 389 YFNSDRSGGWDIWRMPVDGAGTDDAKAQRVTSDELEDWFPHFSPNGKWMLVFSFPKGTKT 448 Query: 416 SK 417 Sbjct: 449 HN 450 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 91/236 (38%), Gaps = 25/236 (10%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Q+ A + +Y M T+ + + ++ AP ++ +GK +I + Sbjct: 208 QRGPAAPQQRYRSKVTIYDMATKA---TRVVYQADQVVEAPNWTRDGKFLMI----NTGG 260 Query: 283 DIYSVDLQSNATER-----LTNTLFI-NISASYSPDSSQIVFESD--REGKEQLYVMQSN 334 +Y + + + L + + N +S D + F + + Q+++ S+ Sbjct: 261 SLYRIPVNPAGETKAEKIELGDGGYRCNNDHDFSRDGKLLAFSASTPASRQSQVWLANSD 320 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 GS + ++ A + WSP G +AF KF + + G E+ L Sbjct: 321 GSGARLMTP--PAPSYFHGWSPDGKWLAFVGQRDGKFTLFRVPVTGGAEQRLTSHGYDDG 378 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG------RNETLINTPAYASDPQWVG 444 P +SP G+ + F+ + G G ++ + ++G + + + + P + Sbjct: 379 PEYSPDGKWIYFNSDRSG--GWDIWRMPVDGAGTDDAKAQRVTSDELEDWFPHFSP 432 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 26/228 (11%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + L + ++ + + + DG+ R +TP +SP+ Sbjct: 285 YRCNNDHDFSRDGKLLAFSASTPASRQSQVWLANSDGSGARLMTPPAPSYFHG--WSPDG 342 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + +A+ D + T A +R+ + P +S +GK + + D Sbjct: 343 KWLAFVGQRDGKFTLFRVPVT--GGAEQRLTSH-GYDDGPEYSPDGKWIYFNSDRSGGWD 399 Query: 284 IYSVDLQSN-----ATERLTNTLFINISASYSPDSSQIVFESDREGKE---------QLY 329 I+ + + +R+T+ + +SP+ ++ S +G + +L Sbjct: 400 IWRMPVDGAGTDDAKAQRVTSDELEDWFPHFSPNGKWMLVFSFPKGTKTHNDKMEGVKLR 459 Query: 330 VMQSNGSDQK-------RISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + ++ G D K + + + WSP A+ F Sbjct: 460 LFKAPGKDLKASTPEVLQTFFGGQGTINVNSWSPDSGKFAYVVFEPMN 507 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 17/172 (9%) Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV-MQSNGS---DQKRI 341 D+ + AT + + + +++ D F G + + G ++ + Sbjct: 224 IYDMATKATRVVYQADQVVEAPNWTRDGK---FLMINTGGSLYRIPVNPAGETKAEKIEL 280 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLLVEDSNLQAPTWSP 399 D +S G L+AF+ + + + + DGS RL+ + WSP Sbjct: 281 GDGGYRCNNDHDFSRDGKLLAFSASTPASRQSQVWLANSDGSGARLMTPPAPSYFHGWSP 340 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGF 445 G+ L F ++DG L+ + + G E + + P Y+ D +W+ F Sbjct: 341 DGKWLAFVGQRDGKFT--LFRVPVTGGAEQRLTSHGYDDGPEYSPDGKWIYF 390 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 11/121 (9%) Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSNLQA 394 + R+ + P W+ G + G + I V + E++ + D + Sbjct: 229 TKATRVVYQADQVVEAPNWTRDGKFL-MINTGGSLYRIPVNPAGETKAEKIELGDGGYRC 287 Query: 395 P---TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP------AYASDPQWVGF 445 +S G+ L FS S+++ + +G L+ P ++ D +W+ F Sbjct: 288 NNDHDFSRDGKLLAFSASTPASRQSQVWLANSDGSGARLMTPPAPSYFHGWSPDGKWLAF 347 Query: 446 M 446 + Sbjct: 348 V 348 >gi|301511542|ref|ZP_07236779.1| translocation protein TolB [Acinetobacter baumannii AB058] Length = 167 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%) Query: 25 GGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQ 84 PT+ A + + A IA F + + L +V DL RS F S+ Sbjct: 18 SPLAPTAAFAQLHLEIAKAPDQAPKIAIVPFNNDNGL----YPIVETDLNRSGRFTSSSK 73 Query: 85 DSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 + + + DW + G +VTG++ + V ++L+DV+ ++ ++ + Sbjct: 74 NL---PANAAINQIQASDWQAAGIPYVVTGQIKQTADG-FEVHYQLYDVQKQQYLLNELL 129 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 + R+ H +SD IYQ++TG GDF+ RI +V Sbjct: 130 NVPASRIRQAGHMVSDAIYQALTGIPGDFSGRIAYV 165 >gi|294497404|ref|YP_003561104.1| putative peptidase [Bacillus megaterium QM B1551] gi|294347341|gb|ADE67670.1| putative peptidase [Bacillus megaterium QM B1551] Length = 659 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 88/255 (34%), Gaps = 48/255 (18%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDT----RIDRAPKRIGNFRSMILAPRFSSNG 269 ++ P+ SP+++ V Y + + I Y + K++ ++ +P +S +G Sbjct: 20 VYNPQISPDRKSVVYTVRETKKIENAYETQLFMLDLETKETKQLTYYKGNNHSPVWSPDG 79 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------- 319 K + +A+ +Y + E LT+ + +SP S +I+F Sbjct: 80 KWIAFLSDRSQAVQLYLLAATGGEAEALTDLEKGVSNPVWSPYSDEIMFSTKVGEKAVRV 139 Query: 320 ------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 SD G + V++ + ++ D + WSP Sbjct: 140 EQNHEHPQPYEVERLLYKSDVSGYLKGEYTHVAVVKLKNKEVTFLT-DGPYHHSVGCWSP 198 Query: 357 QGDLIAFTKFSGEK------FAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFS-- 407 + I F GE + ++ +D + + E +WSP G + + Sbjct: 199 DANSIVFCSSRGENPDLSLTMDVFILHRDTKKVTSITAETGYFHQVSWSPDGSYIAYIGN 258 Query: 408 -RKKDGDTGSKLYSI 421 R + + +Y Sbjct: 259 ERTYGSASMNDIYIY 273 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVE-DSNLQAPTWSPS 400 S ++P SP + +T +K + ++ + + + L N +P WSP Sbjct: 19 SVYNPQISPDRKSVVYTVRETKKIENAYETQLFMLDLETKETKQLTYYKGNNHSPVWSPD 78 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVGFMD 447 G+ + F + +LY + G E L + S+P W + D Sbjct: 79 GKWIAFLSDRS--QAVQLYLLAATGGEAEALTDLEKGVSNPVWSPYSD 124 Score = 40.0 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 11/72 (15%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN-------TP 434 L E ++ P SP +S++++ ++ + ++L+ +DL + + +P Sbjct: 14 LYELKSVYNPQISPDRKSVVYTVRETKKIENAYETQLFMLDLETKETKQLTYYKGNNHSP 73 Query: 435 AYASDPQWVGFM 446 ++ D +W+ F+ Sbjct: 74 VWSPDGKWIAFL 85 >gi|162454268|ref|YP_001616635.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161164850|emb|CAN96155.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1515 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 13/263 (4%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +V+ ++ V + DG + + +F +SP+ + + + D V + Sbjct: 1195 RRIVTASEDRTVRVRNADGTGTPLILRGHEGRIFSATWSPDGKHIVTTSED----YTVRV 1250 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 P + + +S +G+R + S D I++ D + L Sbjct: 1251 WSADGTGTPLILRGHHERVNFAAWSPDGRRIV-SASDDLTARIWNAD-GTGEPLVLRGHE 1308 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + AS+SPDS ++V S V ++G+ + + EA WSP G + Sbjct: 1309 LLVKYASWSPDSRRVVTASY---DNTARVWNADGTGEPVVIARHEAFLSAAEWSPDGKRV 1365 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 T + + + + G L D+++ WS G+ ++ + + D ++++S Sbjct: 1366 V-TASTDKTARVWNVDGSGEPVILAGHDNDVLRAVWSADGKRILTASR---DGTARIWSA 1421 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 D G L +W Sbjct: 1422 DGKGEPLILRGHAEPVYSAEWSP 1444 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 103/271 (38%), Gaps = 20/271 (7%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S +++ + V + DG + + +SP+ + + A++D + RV+ Sbjct: 977 SRRILTASRDETARVWNADGTGEPIVLRGHRGWVAAGAWSPDGRHIVTASWD--NTARVW 1034 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-------NA 293 D + I + +S +GKR + + +D +++ D + Sbjct: 1035 NADGTGEPLVFNI-EQGGDVYWAAWSPDGKRIV-TASEDGRARVWNADGTGEPIVLSPHG 1092 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 RL+ T ++ ++SPD +I+ + +++++ ++G+ + + F Sbjct: 1093 LLRLSTTYLLST--TFSPDGRRILAT---DWDKKVWLWNADGTGDPVVLHGHQNVVFVAA 1147 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 WSP G IA + G + S + ++ + A WSP GR ++ + + D Sbjct: 1148 WSPDGRHIASGSWDGTA-RVWSADLQSSPPVIGDHEAAVAAAAWSPDGRRIVTASE---D 1203 Query: 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++ + D G L W Sbjct: 1204 RTVRVRNADGTGTPLILRGHEGRIFSATWSP 1234 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 32/313 (10%) Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL-----CVMDRDG 200 P W + + ++ SI+ +SRI V+ S I + V DG Sbjct: 856 GVPRGWSDL---VFSALHGSISSVVLRHSSRISSVAWSPDGARIATACDDRAARVWRADG 912 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + D+ ++ +SP+ + +A A+ D + + P + R +I Sbjct: 913 TGEPLVLRGHDETVYSVAWSPDGKHIATASSDK----TARVWNADGTGEPIVLRGHRDVI 968 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +S + +R L + +DE +++ D + L + ++SPD IV S Sbjct: 969 QLVAYSPDSRRIL-TASRDETARVWNAD-GTGEPIVLRGHRGWVAAGAWSPDGRHIVTAS 1026 Query: 321 DREGKEQLYVMQSNGSDQKRISQ-DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 V ++G+ + + ++ + WSP G I G V D Sbjct: 1027 ---WDNTARVWNADGTGEPLVFNIEQGGDVYWAAWSPDGKRIVTASEDGRA---RVWNAD 1080 Query: 380 GSQERLL--------VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 G+ E ++ + + L + T+SP GR ++ D D L++ D G L Sbjct: 1081 GTGEPIVLSPHGLLRLSTTYLLSTTFSPDGRRIL---ATDWDKKVWLWNADGTGDPVVLH 1137 Query: 432 NTPAYASDPQWVG 444 W Sbjct: 1138 GHQNVVFVAAWSP 1150 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 92/263 (34%), Gaps = 27/263 (10%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 V+ ++ V DG + + + +SP+ +++ A+ D L + + Sbjct: 1240 VTTSEDYTVRVWSADGTGTPLILRGHHERVNFAAWSPDGRRIVSASDD----LTARIWNA 1295 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 P + ++ +S + +R +++ D +++ D + + Sbjct: 1296 DGTGEPLVLRGHELLVKYASWSPDSRR-VVTASYDNTARVWNAD-GTGEPVVIARHEAFL 1353 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +A +SPD ++V S + V +GS + I + VWS G I Sbjct: 1354 SAAEWSPDGKRVVTAST---DKTARVWNVDGSGEPVILAGHDNDVLRAVWSADGKRILTA 1410 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLYSID 422 G + DG E L++ + WSP GR +I + D Sbjct: 1411 SRDGTA---RIWSADGKGEPLILRGHAEPVYSAEWSPDGRRVITAS------------AD 1455 Query: 423 LNGRNETLINTPAYASDPQ-WVG 444 R T + P DP+ W+ Sbjct: 1456 GTARVWTDLEVPRGPDDPKLWLA 1478 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 77/188 (40%), Gaps = 9/188 (4%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +VS + + + DG + + ++ +SP+ ++V A+YD+ + Sbjct: 1279 RRIVSASDDLTARIWNADGTGEPLVLRGHELLVKYASWSPDSRRVVTASYDN----TARV 1334 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P I + + A +S +GKR +++ D+ +++VD S L Sbjct: 1335 WNADGTGEPVVIARHEAFLSAAEWSPDGKR-VVTASTDKTARVWNVD-GSGEPVILAGHD 1392 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + A +S D +I+ + R+G +++ ++G + I + + WSP G + Sbjct: 1393 NDVLRAVWSADGKRIL-TASRDGTARIW--SADGKGEPLILRGHAEPVYSAEWSPDGRRV 1449 Query: 362 AFTKFSGE 369 G Sbjct: 1450 ITASADGT 1457 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 7/150 (4%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S VV+ N+ V + DG + + L +SP+ ++V A+ D Sbjct: 1320 SRRVVTASYDNTARVWNADGTGEPVVIARHEAFLSAAEWSPDGKRVVTASTDK----TAR 1375 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + + P + + +L +S++GKR L + +D I+S D + L Sbjct: 1376 VWNVDGSGEPVILAGHDNDVLRAVWSADGKRIL-TASRDGTARIWSADGKGEPLI-LRGH 1433 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYV 330 SA +SPD +++ + +G +++ Sbjct: 1434 AEPVYSAEWSPDGRRVI-TASADGTARVWT 1462 >gi|284037589|ref|YP_003387519.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] gi|283816882|gb|ADB38720.1| peptidase S9 prolyl oligopeptidase active site domain protein [Spirosoma linguale DSM 74] Length = 660 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 90/260 (34%), Gaps = 41/260 (15%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + P+ SP+ Q VAY Y D + ++ N + +P +S +G Sbjct: 34 VSNPKISPDGQWVAYTLTRTNWDENSYDTDIWLVNIQTGNRFQLTNSKKSNNSPAWSPDG 93 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------- 319 K +D+ +Y + ++ + +SP+ QIVF Sbjct: 94 KWLAFLSTRDDKPQLYLISPSGGEARAISKFETGVTAFRWSPNGKQIVFTATVPDAKPDK 153 Query: 320 ------SDREGKEQLYVM----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SD E Y M + K +++ K+ S + V SP G IA+ Sbjct: 154 ERKEKYSDYEVVRDDYKMVHLYLIDSLFNEKPASAKPLTRGKDFSVGNFVVSPDGKKIAY 213 Query: 364 TK------FSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD--- 413 +G + V+ D +++ Q P WSP G+ + F + + Sbjct: 214 DAARNPDLINGHTSDLYVLTLGDTISRKIVSLKGPDQDPVWSPDGKQIAFVTANENEFYF 273 Query: 414 -TGSKLYSIDLNGRNETLIN 432 T + ++ G T++ Sbjct: 274 YTNRLIATVPATGGTPTMLT 293 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 40/225 (17%) Query: 259 MILAPRFSSNGKRALISVQKDEA------MDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+ S +G+ ++ + DI+ V++Q+ +LTN+ N S ++SPD Sbjct: 33 SVSNPKISPDGQWVAYTLTRTNWDENSYDTDIWLVNIQTGNRFQLTNSKKSNNSPAWSPD 92 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------- 364 + F S R+ K QLY++ +G + + IS+ E WSP G I FT Sbjct: 93 GKWLAFLSTRDDKPQLYLISPSGGEARAISK-FETGVTAFRWSPNGKQIVFTATVPDAKP 151 Query: 365 --------------KFSGEKFAIGVMK------KDGSQERLLVEDSNLQAPTWSPSGRSL 404 + + + ++ ++ +D ++ SP G+ + Sbjct: 152 DKERKEKYSDYEVVRDDYKMVHLYLIDSLFNEKPASAKPLTRGKDFSVGNFVVSPDGKKI 211 Query: 405 IFSRKKDGDT----GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + ++ D S LY + L + + +++ DP W Sbjct: 212 AYDAARNPDLINGHTSDLYVLTLGDTISRKIVSLKGPDQDPVWSP 256 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 115/309 (37%), Gaps = 57/309 (18%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + +++ N LT S+ P +SP+ + +A+ + D+ + + Sbjct: 58 NSYDTDIWLVNIQTGNRFQLTNSKKS-NNSPAWSPDGKWLAFLSTRDDKPQLYLI--SPS 114 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQ--------------------KDEAMDIYS 286 + I F + + A R+S NGK+ + + +D+ ++ Sbjct: 115 GGEARAISKFETGVTAFRWSPNGKQIVFTATVPDAKPDKERKEKYSDYEVVRDDYKMVHL 174 Query: 287 VDLQS------NATERLTNTLFINISAS-YSPDSSQIVFESDR------EGKEQLYVMQS 333 + S + + LT ++ SPD +I +++ R LYV+ Sbjct: 175 YLIDSLFNEKPASAKPLTRGKDFSVGNFVVSPDGKKIAYDAARNPDLINGHTSDLYVLTL 234 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLV 387 + ++I K DPVWSP G IAF + +F I + G +L Sbjct: 235 GDTISRKIVSLK-GPDQDPVWSPDGKQIAFVTANENEFYFYTNRLIATVPATGGTPTMLT 293 Query: 388 EDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP--------AYA 437 + A W+P G ++FS + T S L+ +D + + P +++ Sbjct: 294 NTFDENANLLDWTPDG--ILFSGYQ--KTSSHLFRLDPATQKTERLTKPDNLIATQFSFS 349 Query: 438 SDPQWVGFM 446 D + + F+ Sbjct: 350 KDGRQMAFV 358 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 24/226 (10%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD----TRIDRAPKRIGNF 256 A+ + LT +D + SP+ +K+AY + D++ + D T D ++I + Sbjct: 186 ASAKPLTRGKDFSVGNFVVSPDGKKIAYDAARNPDLINGHTSDLYVLTLGDTISRKIVSL 245 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYS------VDLQSNATERLTNTLFINISA-SY 309 + P +S +GK+ + Y+ V LTNT N + + Sbjct: 246 KGPDQDPVWSPDGKQIAFVTANENEFYFYTNRLIATVPATGGTPTMLTNTFDENANLLDW 305 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +PD I+F ++ L+ + +R+++ +S G +AF Sbjct: 306 TPDG--ILFSGYQKTSSHLFRLDPATQKTERLTKPDNLIATQFSFSKDGRQMAFVGAMPN 363 Query: 370 KF-AIGVMKKDGSQERLLVEDSNLQAP---------TW-SPSGRSL 404 + I R L + P +W S G + Sbjct: 364 TYAEIQTSSVQAFSPRTLTDMGAQVTPFKMSTREVISWKSADGNMI 409 >gi|255531799|ref|YP_003092171.1| amidohydrolase [Pedobacter heparinus DSM 2366] gi|255344783|gb|ACU04109.1| amidohydrolase [Pedobacter heparinus DSM 2366] Length = 1084 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 25/198 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +GK + + D +Y + + + L++ +I +SP+ I + SD+ G Sbjct: 57 VSPDGKDIVFDLLGD----LYIMPISGGSAVLLSSGPAWDIQPRFSPNGRYISYTSDKSG 112 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL-IAFTKFSGEKF----AIGVMKKD 379 + +++M +GS +++IS++ + W P + IA F+G + + + Sbjct: 113 ADNIWIMNRDGSGKRQISKETFRLLNNATWMPNSEYLIARKHFTGTRSLGAGEMWMYSIY 172 Query: 380 GSQERLLV----EDSNLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSI---DLN 424 G + L + + P SP G+ L FS D +Y+I DL Sbjct: 173 GGEGVQLTKRKNDQQDAGEPNVSPDGKYLYFSEDMSPGPNFEYSKDPNGMIYAIRQLDLT 232 Query: 425 -GRNETLINTPAYASDPQ 441 G+ +LI P A+ PQ Sbjct: 233 SGKITSLIAQPGGAARPQ 250 Score = 96.6 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 91/234 (38%), Gaps = 28/234 (11%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 G + + + SP+ + + + D I+ + + + + Sbjct: 36 YKGNTKTFTFNTDEGTWMNLDVSPDGKDIVFDLLGDLYIMPI------SGGSAVLLSSGP 89 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQI 316 + + PRFS NG+ + K A +I+ ++ + +++ F + +A++ P+S + Sbjct: 90 AWDIQPRFSPNGRYISYTSDKSGADNIWIMNRDGSGKRQISKETFRLLNNATWMPNSEYL 149 Query: 317 V----FESDRE-GKEQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKF--- 366 + F R G ++++ G + ++++ K +P SP G + F++ Sbjct: 150 IARKHFTGTRSLGAGEMWMYSIYGGEGVQLTKRKNDQQDAGEPNVSPDGKYLYFSEDMSP 209 Query: 367 ----------SGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRK 409 +G +AI + + L+ + P SP G+ + + ++ Sbjct: 210 GPNFEYSKDPNGMIYAIRQLDLTSGKITSLIAQPGGAARPQVSPDGKMMAYVKR 263 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 20/198 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + V + + + P+R+ P S++GK + + D Sbjct: 370 SADGKFVVF------NAAGFLYKKDLPNGLPERVSKGIDFEFEPEISADGKSVIYTTWSD 423 Query: 280 EA-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE----SDREG-----KEQLY 329 E I DL+S T LT S S+S +IVF +D G ++ Sbjct: 424 EFKGAIKKTDLKSGKTVTLTTEKGFYYSPSFSNKGDKIVFRKGVGNDVLGYAFGRGTGIF 483 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 M ++G + I+++ P ++ I F K A + +G+ ER Sbjct: 484 TMPASGGPKTLITENG----IRPKFNADDSRIYFQSSEDGKKAFKSIDLNGANERTHYTS 539 Query: 390 SNLQAPTWSPSGRSLIFS 407 + SP G+ + F+ Sbjct: 540 TYATQFAPSPDGKWMAFT 557 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 72/225 (32%), Gaps = 30/225 (13%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 + F+ ++S + N + +M+RDG+ R ++ ++L + PN + + Sbjct: 92 DIQPRFSPNGRYISYTSDKSGADN-IWIMNRDGSGKRQISKETFRLLNNATWMPNSEYLI 150 Query: 228 YATYDDE------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS------ 275 + + +Y + + N + P S +GK S Sbjct: 151 ARKHFTGTRSLGAGEMWMYSIYGGEGVQLTKRKNDQQDAGEPNVSPDGKYLYFSEDMSPG 210 Query: 276 ----VQKDEAMDIYSV---DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 KD IY++ DL S L SPD + + K L Sbjct: 211 PNFEYSKDPNGMIYAIRQLDLTSGKITSLIAQPGGAARPQVSPDGKMMAYVKRMRLKSVL 270 Query: 329 YVMQSNGSDQ----------KRISQDKEASYFDPVWSPQGDLIAF 363 + ++ ++ + Y + W+P G I F Sbjct: 271 VLQNLQTGEEWPIYEDLSHDQQETWAIFGVYPNYAWTPDGKSIIF 315 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 97/276 (35%), Gaps = 56/276 (20%) Query: 216 EPRFSPNQQKVAYATYDDEDILRV--YLMDTRIDRAPKRIGNFRSMILA-----P--RFS 266 P+ SP+ + +AY + V L + + + + A P ++ Sbjct: 248 RPQVSPDGKMMAYVKRMRLKSVLVLQNLQTGEEWPIYEDLSHDQQETWAIFGVYPNYAWT 307 Query: 267 SNGKRALISVQKDEAMDIYSVDLQS----NATERLTNTLFINISASY------------- 309 +GK + + I +DL S N +T + I + Y Sbjct: 308 PDGKSIIFYARG----KIKKIDLNSLFTNNLPFHVTGSQTIQQALHYQQQVFSNDFTVKM 363 Query: 310 ------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S D +VF + LY +R+S+ + F+P S G + + Sbjct: 364 IRQLNTSADGKFVVFNA----AGFLYKKDLPNGLPERVSKGID-FEFEPEISADGKSVIY 418 Query: 364 TKFSGEKFAIGVMKKD---GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD------- 413 T +S E F + K D G L E +P++S G ++F + D Sbjct: 419 TTWSDE-FKGAIKKTDLKSGKTVTLTTEKGFYYSPSFSNKGDKIVFRKGVGNDVLGYAFG 477 Query: 414 TGSKLYSIDLNGRNETLINTPA----YASDPQWVGF 445 G+ ++++ +G +TLI + +D + F Sbjct: 478 RGTGIFTMPASGGPKTLITENGIRPKFNADDSRIYF 513 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 94/314 (29%), Gaps = 55/314 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQKVAY------ 228 I + + + + G LT ++ Q EP SP+ + + + Sbjct: 150 IARKHFTGTRSLGAGEMWMYSIYGGEGVQLTKRKNDQQDAGEPNVSPDGKYLYFSEDMSP 209 Query: 229 -----ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + D ++ + P+ S +GK + Sbjct: 210 GPNFEYSKDPNGMIYAIRQLDLTSGKITSLIAQPGGAARPQVSPDGKMMAYVKRMRLKSV 269 Query: 284 IYSVDLQSNATERLTNTLFIN---------ISAS--YSPDSSQIVFESDREGKEQLYVMQ 332 + +LQ+ + L + + + ++PD I+F + + ++ + Sbjct: 270 LVLQNLQTGEEWPIYEDLSHDQQETWAIFGVYPNYAWTPDGKSIIFYA----RGKIKKID 325 Query: 333 SN------------GSDQKRISQDKEASYFDPVW----------SPQGDLIAFTKFSGEK 370 N GS + + + F + S G + F + Sbjct: 326 LNSLFTNNLPFHVTGSQTIQQALHYQQQVFSNDFTVKMIRQLNTSADGKFVVF---NAAG 382 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNET 429 F +G ER+ P S G+S+I++ D + + DL +G+ T Sbjct: 383 FLYKKDLPNGLPERVSKGIDFEFEPEISADGKSVIYTTWSD-EFKGAIKKTDLKSGKTVT 441 Query: 430 LINTPAYASDPQWV 443 L + P + Sbjct: 442 LTTEKGFYYSPSFS 455 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 70/235 (29%), Gaps = 35/235 (14%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V + S K ++ D LT + + P FS K+ + + + Sbjct: 416 VIYTTWSDEFKGAIKKTDLKSGKTVTLTTEK-GFYYSPSFSNKGDKIVF-RKGVGNDVLG 473 Query: 240 YLMDTRIDRAPKRIGNFRSMILA-----PRFSSNGKRALISVQKDEAMDIYSVDLQS-NA 293 Y ++ P+F+++ R +D S+DL N Sbjct: 474 YAFGRGTGIFTMPASGGPKTLITENGIRPKFNADDSRIYFQSSEDGKKAFKSIDLNGANE 533 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS----------NGSDQKRISQ 343 T+T + SPD + F +YV G+ +++ Sbjct: 534 RTHYTSTYATQFAP--SPDGKWMAFT----ELFNIYVTPMVTTGRPLDLSAGNKTIPLTR 587 Query: 344 DKEASYFDPVWSPQGDLI-------AFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + + WS + + F++ F DGS ++ DS Sbjct: 588 ITKDAGTYIHWSHDSNKLFWTLGEQYFSRDVKTAFNF----TDGSTAQIKAPDST 638 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 7/78 (8%) Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 +++ I K + ++ SP G+ ++F D LY + ++G + Sbjct: 28 DKQWDIEKYKGNTKTFTFNTDEGTWMNLDVSPDGKDIVF------DLLGDLYIMPISGGS 81 Query: 428 ETLINT-PAYASDPQWVG 444 L+++ PA+ P++ Sbjct: 82 AVLLSSGPAWDIQPRFSP 99 >gi|256379057|ref|YP_003102717.1| amidohydrolase [Actinosynnema mirum DSM 43827] gi|255923360|gb|ACU38871.1| amidohydrolase [Actinosynnema mirum DSM 43827] Length = 1031 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 12/195 (6%) Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D+ + A +R + S +G+ I D I+ + LT+ Sbjct: 35 QDSELSGALRRFTATEGTNITAALSPDGRTIAI----DLYTRIWLLPASGGRARPLTDPE 90 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +SPD +VF+S R+G L+ + +G +R + + +P +SP G I Sbjct: 91 QDATRPHFSPDGRSLVFQSYRDGNYHLWTIGVDGRGLRRRTS-GPTDHREPRFSPDGRAI 149 Query: 362 AFTKFSG-EKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLY 419 A++ +G + + + ++ + L N P +S GR L+ + G+ + Sbjct: 150 AYSGDAGADGYHLWLLDLATGRTTRLTTGPNDDGEPVFSADGRHLVCTAD-----GAAID 204 Query: 420 SIDLNGRNETLINTP 434 I L+G T + P Sbjct: 205 RITLDGGARTRLVQP 219 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 41/251 (16%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P SPN ++VA+ L +D P+ + + S P + +G + Sbjct: 324 IASPVLSPNGREVAFRALGA-------LWLLPLDGEPRALVDDGSFASDPDWRPDGSALV 376 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + ++ DL + A RLT+ ++ +PD +I F+ D +G Sbjct: 377 YTSDRTGTPALWRHDLATGADTRLTDLPGAQLTPRIAPDGERIAFQ-DADGA----TWVL 431 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERLL 386 + ++ P WSP G +A ++ I + D + R Sbjct: 432 SDGVATQVLPALFQP-GRPTWSPDGRTLALAAVKPLSRRYREGTNQILTVALDTGEVRYA 490 Query: 387 -------VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR------NETLINT 433 + P WSP GR L F S L+ + ++GR + Sbjct: 491 EPLPGKSLSTRGDDGPVWSPDGRWLAFV------VESALWVVPVDGRGALTGDPRRIAAG 544 Query: 434 PAYASDPQWVG 444 PA A P W G Sbjct: 545 PADA--PSWSG 553 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 29/214 (13%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++ G + + +P S NG+ + A+ + +D L + + Sbjct: 316 RKSGPVKGIA-SPVLSPNGREVAF--RALGALWLLPLD---GEPRALVDDGSFASDPDWR 369 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD S +V+ SDR G L+ R++ D + P +P G+ IAF G Sbjct: 370 PDGSALVYTSDRTGTPALWRHDLATGADTRLT-DLPGAQLTPRIAPDGERIAFQDADGAT 428 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS-----RKKDGDTGSKLYSIDLNG 425 + + DG ++L PTWSP GR+L + ++ + +++ ++ L+ Sbjct: 429 WVL----SDGVATQVLPALFQPGRPTWSPDGRTLALAAVKPLSRRYREGTNQILTVALDT 484 Query: 426 RNETLI-------------NTPAYASDPQWVGFM 446 + P ++ D +W+ F+ Sbjct: 485 GEVRYAEPLPGKSLSTRGDDGPVWSPDGRWLAFV 518 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 69/400 (17%), Positives = 125/400 (31%), Gaps = 54/400 (13%) Query: 62 GGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGK 121 G + + R+ + + PD + ++V GRV+ + Sbjct: 200 GAAIDRITLDGGARTRLVQPTTGTRVLAPGLTPDGRLVHTAFAGPTTSLVVDGRVVSADE 259 Query: 122 DRL---------------RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSI 166 D R+ D+ F ++ + + + + Sbjct: 260 DLFGSSPQWLGAALLHTADGGLRVRDLTTGAT-RAIPFEATVEHTPHVDRPAARPVDRKS 318 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 KG S +L + V+ +L ++ DG + +P + P+ + Sbjct: 319 GPVKGI-ASPVLSPNGREVAFRALGALWLLPLDGEPRALVDDGS--FASDPDWRPDGSAL 375 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y + D ++ D R+ + L PR + +G+R D A + Sbjct: 376 VYTS-DRTGTPALWRHDLATGADT-RLTDLPGAQLTPRIAPDGERIAFQ-DADGATWV-- 430 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFES-------DREGKEQLYVMQSNGSDQK 339 L ++ LF ++SPD + + REG Q+ + + + + Sbjct: 431 --LSDGVATQVLPALFQPGRPTWSPDGRTLALAAVKPLSRRYREGTNQILTVALDTGEVR 488 Query: 340 RISQDKEASYF-----DPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-----SQERLLVED 389 S PVWSP G +AF S A+ V+ DG R + Sbjct: 489 YAEPLPGKSLSTRGDDGPVWSPDGRWLAFVVES----ALWVVPVDGRGALTGDPRRIAAG 544 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 AP+WS +SL+ L LNGR Sbjct: 545 PAD-APSWSGDSKSLLHLEN------GVLVRTGLNGRARR 577 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 113/341 (33%), Gaps = 74/341 (21%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + T +G + L ++ + + ++ G R LT +Q P FSP+ Sbjct: 44 RRFTATEGTNITAALSPDGRTIAIDLYTRIWLLPASGGRARPLTD-PEQDATRPHFSPDG 102 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-EAM 282 + + + +Y D + ++ + +R + + PRFS +G+ S + Sbjct: 103 RSLVFQSYRDGN-YHLWTIGVDGRGLRRR-TSGPTDHREPRFSPDGRAIAYSGDAGADGY 160 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++ +DL + T RLT + +S D +V +D + + +G + R+ Sbjct: 161 HLWLLDLATGRTTRLTTGPNDDGEPVFSADGRHLVCTAD---GAAIDRITLDGGARTRLV 217 Query: 343 QDKEAS-YFDPVWSPQGDLI----------------------------------AFTKFS 367 Q + P +P G L+ A + Sbjct: 218 QPTTGTRVLAPGLTPDGRLVHTAFAGPTTSLVVDGRVVSADEDLFGSSPQWLGAALLHTA 277 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQA------------------------PTWSPSGRS 403 + V R + ++ ++ P SP+GR Sbjct: 278 DGG--LRVRDLTTGATRAIPFEATVEHTPHVDRPAARPVDRKSGPVKGIASPVLSPNGRE 335 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + F L+ + L+G L++ ++ASDP W Sbjct: 336 VAF------RALGALWLLPLDGEPRALVDDGSFASDPDWRP 370 Score = 97.8 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 S A R T T NI+A+ SPD I + +++++ ++G + ++ D E Sbjct: 40 SGALRRFTATEGTNITAALSPDGRTIA----IDLYTRIWLLPASGGRARPLT-DPEQDAT 94 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRK 409 P +SP G + F + + + + DG R ++ + P +SP GR++ +S Sbjct: 95 RPHFSPDGRSLVFQSYRDGNYHLWTIGVDGRGLRRRTSGPTDHREPRFSPDGRAIAYSGD 154 Query: 410 KDGDTGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 D G L+ +DL GR L P +P + Sbjct: 155 AGAD-GYHLWLLDLATGRTTRLTTGPNDDGEPVFSA 189 >gi|120434675|ref|YP_860364.1| WD-40-like repeat-containing amidohydrolase [Gramella forsetii KT0803] gi|117576825|emb|CAL65294.1| WD40-like repeat containing amidohydrolase family protein [Gramella forsetii KT0803] Length = 1102 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 25/198 (12%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +GK + + D IY + + L + + +SPD S+I F SD G Sbjct: 63 VSPDGKTIVFDLLGD----IYKMPISGGKASILRTGIPYEVQPRFSPDGSKISFTSDAGG 118 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----FTKFS----GEKFAIGVM 376 + +++M NG + K+I+++K + VW+P G+ + FT GE + + Sbjct: 119 GDNIWIMDVNGKNAKQITEEKFRLLNNAVWTPDGNSVIARKHFTSGRSLGAGEMWQYHIA 178 Query: 377 KKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSIDL---- 423 K+G Q + ++ P+ + G+ L +S + D ++Y I Sbjct: 179 AKEGLQLTERKNDQQDVNEPSITSDGKYLFYSEDMYPGGNFQYNKDPNKQIYVIKRYNFE 238 Query: 424 NGRNETLINTPAYASDPQ 441 G T+ P A+ P+ Sbjct: 239 TGETITVTGGPGGAARPE 256 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 101/269 (37%), Gaps = 32/269 (11%) Query: 201 ANIRYLTPSRDQILFEP-RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 N + +T + + + SP+ + + + D +Y M +A Sbjct: 44 WNFKTMTLNASEGTWMNLDVSPDGKTIVFDLLGD-----IYKMPISGGKASILRTGIP-Y 97 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV- 317 + PRFS +G + + +I+ +D+ +++T F + +A ++PD + ++ Sbjct: 98 EVQPRFSPDGSKISFTSDAGGGDNIWIMDVNGKNAKQITEEKFRLLNNAVWTPDGNSVIA 157 Query: 318 ---FESDRE-GKEQLYVMQSNGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTK--FSGE 369 F S R G +++ + ++++ K +P + G + +++ + G Sbjct: 158 RKHFTSGRSLGAGEMWQYHIAAKEGLQLTERKNDQQDVNEPSITSDGKYLFYSEDMYPGG 217 Query: 370 KF--------AIGVMKK----DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 F I V+K+ G + P SP G+ L F ++ T S Sbjct: 218 NFQYNKDPNKQIYVIKRYNFETGETITVTGGPGGAARPEVSPDGKKLAFVKRI--RTKSV 275 Query: 418 LYSIDL-NGRNETLINTPAYASDPQWVGF 445 L+ DL G + + + W F Sbjct: 276 LFIHDLETGEEWPVFDNLSKDQQEAWAIF 304 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 46/267 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN-------------FRSMILAPR 264 + PN +++ + + + I +V + + + P ++ N S P+ Sbjct: 311 SWIPNSEELVF--WANGKINKVNIDNYEVSEIPFQVNNKIKIAETLQTDHEVFSEKFNPK 368 Query: 265 F------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S NGK + + ++ L + +R+TN+ S+SPD + I++ Sbjct: 369 VIRHAVTSPNGKTLVF----NAVGFLWKKSLPNGKPQRITNSEDFEFEPSFSPDGNHIIY 424 Query: 319 -ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------ 371 D + + + +GS K I+ +K Y +P +S G +I F+K SG Sbjct: 425 VTWDDQNLGTIKRVSLSGSASKTITSEK-GIYRNPSYSNDGKMIVFSKESGNSDLGQTFT 483 Query: 372 ---AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGDTGSKLYSIDLNGR 426 I M G + LV++ P ++ + F G+ L S+DLNG+ Sbjct: 484 KEPGIYTMNASGDNVKKLVKEG--IFPIFNVDDSRIFFQTGGYFFGNITKSLKSVDLNGK 541 Query: 427 NETLINTPAYA------SDPQWVGFMD 447 +E YA D +W+ F + Sbjct: 542 DERTHINSKYANRILPSPDNKWILFSN 568 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 99/285 (34%), Gaps = 38/285 (13%) Query: 160 DDIYQSIT--GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 D ++++T +G + + + + + + M G + + +P Sbjct: 43 DWNFKTMTLNASEGTWMNLDVSPDGKTIVFDLLGDIYKMPISGGKA-SILRTGIPYEVQP 101 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL---- 273 RFSP+ K+++ + D +++MD A + ++ ++ +G + Sbjct: 102 RFSPDGSKISFTS-DAGGGDNIWIMDVNGKNAKQITEEKFRLLNNAVWTPDGNSVIARKH 160 Query: 274 ISVQKD-EAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIV----------FE 319 + + A +++ + + +LT N S + D + F+ Sbjct: 161 FTSGRSLGAGEMWQYHIAAKEGLQLTERKNDQQDVNEPSITSDGKYLFYSEDMYPGGNFQ 220 Query: 320 SDREGKEQLYVM---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 +++ +Q+YV+ + ++ P SP G +AF K K + + Sbjct: 221 YNKDPNKQIYVIKRYNFETGETITVT-GGPGGAARPEVSPDGKKLAFVKRIRTKSVLFIH 279 Query: 377 KKDGSQERLLVED------------SNLQAPTWSPSGRSLIFSRK 409 + +E + ++ +W P+ L+F Sbjct: 280 DLETGEEWPVFDNLSKDQQEAWAIFGVYPNFSWIPNSEELVFWAN 324 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 34/229 (14%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + +T S D FEP FSP+ + Y T+DD+++ + + A K I + + + Sbjct: 400 PQRITNSED-FEFEPSFSPDGNHIIYVTWDDQNLGTIKRVSL-SGSASKTITSEKGIYRN 457 Query: 263 PRFSSNGKRALISVQKDEA---------MDIYSVDLQSNATERLTNTLFINISASYSPDS 313 P +S++GK + S + + IY+++ + ++L I ++ D Sbjct: 458 PSYSNDGKMIVFSKESGNSDLGQTFTKEPGIYTMNASGDNVKKLVKEG---IFPIFNVDD 514 Query: 314 SQIVFESDREG------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+I F++ G + L + NG D++ K A+ P SP I F+ Sbjct: 515 SRIFFQT--GGYFFGNITKSLKSVDLNGKDERTHINSKYANRILP--SPDNKWILFSNLH 570 Query: 368 GEKFAIGVM---------KKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 A M + +D+ + WS + + ++ Sbjct: 571 KAYVAPFAMTGQAIDLTPDSKTLPVTPITKDAGVNL-HWSTNSEKIHWT 618 >gi|116622793|ref|YP_824949.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225955|gb|ABJ84664.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 885 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 95/252 (37%), Gaps = 10/252 (3%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 GA R + + + + P+ + A ++ +++ + Sbjct: 513 GAPRRVFSATNFNFVPRGAWMPD-SRHAVLSFSTGGAQPALWFADLEREKLRKLTASTAA 571 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P + +G+R + + D+ D+ + L A L S ++SPD Q+++ Sbjct: 572 EEFPSLAPDGRRLVFTSVTDD-FDLIELPLDGTAPRTLLANSRNMYSPAWSPDGDQLLYA 630 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKE------ASYFDPVWSPQGDLIAFTKFSGEKFA- 372 +DR G +++ S + + ++ + PV+SP G AF +++ ++ A Sbjct: 631 TDRSGASEIWSRNVKASIDRPMVTARDFPPGTTTALTHPVFSPDGSRFAFVRYATDQPAT 690 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 I V G + + + +PTWSP G S+ +D + + N + + Sbjct: 691 IWVEPTVGGAP-IRMASEYMVSPTWSPDGNSIAGLMHRDRPWQPAIVEVGANMSPHVIAS 749 Query: 433 TPAYASDPQWVG 444 P +W Sbjct: 750 APTCLMPMEWSP 761 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 109/297 (36%), Gaps = 30/297 (10%) Query: 159 SDDIYQSITGEKGDF---NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 + + +S T F +S +++ + G L + G + + L Sbjct: 376 AIQLTRSTTRVSSAFWSPDSAVVYCIDRAGKG----ELWGISPSGGHAVKILED----LH 427 Query: 216 EPRFSPNQQKVAY--ATYDDEDILRVYLMDTRIDRAPKRIGNFR------SMILAPRFSS 267 SP+ + +A AT + + + AP+ S + FS Sbjct: 428 TADISPDGKSLAIWRATESGGAVKSSLWISSPPGAAPRPYLPAPFEVPLESNGGSLHFSP 487 Query: 268 NGKRALISVQKDEAMDIYSVD--LQSNATERLTNTLFINISAS--YSPDSSQIVFE-SDR 322 +GK L+ A ++ + S A R+ + N + PDS V S Sbjct: 488 DGKSILLVASGI-APQVWVLPFPASSGAPRRVFSATNFNFVPRGAWMPDSRHAVLSFSTG 546 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + L+ ++++ A F P +P G + FT + + F + + DG+ Sbjct: 547 GAQPALWFADLEREKLRKLTASTAAEEF-PSLAPDGRRLVFTSVTDD-FDLIELPLDGTA 604 Query: 383 ER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 R LL N+ +P WSP G L+++ + G S+++S ++ + + T Sbjct: 605 PRTLLANSRNMYSPAWSPDGDQLLYATDRSG--ASEIWSRNVKASIDRPMVTARDFP 659 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 18/239 (7%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG R L + ++ P +SP+ ++ YAT D ++ + + Sbjct: 594 DLIELPLDGTAPRTLLA-NSRNMYSPAWSPDGDQLLYAT-DRSGASEIWSRNVKASIDRP 651 Query: 252 RIGN---FRSMILA---PRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + A P FS +G R D+ I+ A R+ + Sbjct: 652 MVTARDFPPGTTTALTHPVFSPDGSRFAFVRYATDQPATIWVEPTVGGAPIRMASE--YM 709 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +S ++SPD + I R+ Q +++ + + WSP G+ +A Sbjct: 710 VSPTWSPDGNSIAGLMHRDRPWQPAIVEVGANMSPHVIASAPTCLMPMEWSPTGEWLACE 769 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +G I + +DG++ R L N A +S G +L + + G T K +IDL Sbjct: 770 ARTG----IELFSRDGARRRTLPRL-NSSAIAFSRDGGTLYAAGRDAGRTFLK--AIDL 821 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 26/208 (12%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 N P +S +GK + L+S +LT + SA +SPD Sbjct: 336 ANDHEAESGPAWSPDGKSIAYLKTVAGIPQLMVRGLESPTAIQLTRSTTRVSSAFWSPD- 394 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---- 369 S +V+ DR GK +L+ + +G +I +D SP G +A + + Sbjct: 395 SAVVYCIDRAGKGELWGISPSGGHAVKILED----LHTADISPDGKSLAIWRATESGGAV 450 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAP--------TWSPSGRSLIFSRKKDGDTGSKLYSI 421 K ++ + G+ R + + P +SP G+S++ +++ + Sbjct: 451 KSSLWISSPPGAAPR-PYLPAPFEVPLESNGGSLHFSPDGKSILLVAS---GIAPQVWVL 506 Query: 422 D---LNGRNETLINTP--AYASDPQWVG 444 +G + + + W+ Sbjct: 507 PFPASSGAPRRVFSATNFNFVPRGAWMP 534 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 94/304 (30%), Gaps = 65/304 (21%) Query: 199 DGANIRYLTPSRD-QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 D A R++ + D + P +SP+ + +AY + ++ ++ Sbjct: 326 DLAAYRFIPFANDHEAESGPAWSPDGKSIAYLKTVAG--IPQLMVRGLESPTAIQLTRST 383 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL-----TNTLFIN-------- 304 + + + +S + + + + +++ + ++ T + + Sbjct: 384 TRVSSAFWSPD-SAVVYCIDRAGKGELWGISPSGGHAVKILEDLHTADISPDGKSLAIWR 442 Query: 305 --------------------------------------ISASYSPDSSQIVFESDREGKE 326 S +SPD I+ + Sbjct: 443 ATESGGAVKSSLWISSPPGAAPRPYLPAPFEVPLESNGGSLHFSPDGKSILLVAS-GIAP 501 Query: 327 QLYVM--QSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQ 382 Q++V+ ++ +R+ ++ W P + G + A+ + + Sbjct: 502 QVWVLPFPASSGAPRRVFSATNFNFVPRGAWMPDSRHAVLSFSTGGAQPALWFADLEREK 561 Query: 383 ERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDP 440 R L + + P+ +P GR L+F+ D L + L+G TL+ P Sbjct: 562 LRKLTASTAAEEFPSLAPDGRRLVFTSVTD---DFDLIELPLDGTAPRTLLANSRNMYSP 618 Query: 441 QWVG 444 W Sbjct: 619 AWSP 622 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 55/204 (26%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SR FV + ++ V G + + + P +SP+ +A + Sbjct: 676 SRFAFVRYATDQPA---TIWVEPTVGGAPIRM---ASEYMVSPTWSPDGNSIA-GLMHRD 728 Query: 235 DILRVYLMDTRIDRAPKRIGNFRS----MILAP--------------------------- 263 + +++ + +P I + + M +P Sbjct: 729 RPWQPAIVEVGANMSPHVIASAPTCLMPMEWSPTGEWLACEARTGIELFSRDGARRRTLP 788 Query: 264 -------RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF---INISASY---- 309 FS +G + + + ++DL + A + I+ A+Y Sbjct: 789 RLNSSAIAFSRDGGTLYAAGRDAGRTFLKAIDLATGAIRDIAQHSGTMVISGGATYQARL 848 Query: 310 --SPDSSQIVFESDREGKEQLYVM 331 S D +V S E + L+++ Sbjct: 849 SLSHDGRSLV-TSAVESQSDLWIL 871 >gi|255035493|ref|YP_003086114.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254948249|gb|ACT92949.1| peptidase S9 prolyl oligopeptidase active site domain protein [Dyadobacter fermentans DSM 18053] Length = 652 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 95/283 (33%), Gaps = 62/283 (21%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + V D + +SP+ +++ Y T L +Y + T R R Sbjct: 54 IMVTPADQTAPVTIARGIAH-----GWSPDGRELLYET--ANGELHIYTVSTAASRLLTR 106 Query: 253 IGNFRSMILAPR-----FSSNGKRALISV--------------------QKDEA------ 281 I +S +G+ K Sbjct: 107 RSESAYFINHLALNNCIWSPDGQSIAFVGADVPEAPEPAVRVIDDLLYKSKGGRGRPIYA 166 Query: 282 ----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVM 331 IY + A E LT+ F S ++SPD I F S+R + +++ + Sbjct: 167 DRAQTHIYRIPAAGGAPEPLTSGPFNEHSTTWSPDGRYIAFVSNRTDRPDDIQQSEIWKV 226 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQ 382 + +S D + P WSP+G IAF G E I ++ DG Q Sbjct: 227 DIHSKAITPLS-DHRGLAYQPAWSPKGGHIAFLATPGQTGTNDSPAEDTHIALIPADGGQ 285 Query: 383 ERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 R L + D ++ W PSG+ + F+ GDT +Y + + Sbjct: 286 MRYLTKSLDRRIEHLRWHPSGKYIYFTAGDRGDT--SVYRVSI 326 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 65/204 (31%), Gaps = 43/204 (21%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTR----------------------------IDRAP 250 +SP+ Q +A+ D + + AP Sbjct: 124 WSPDGQSIAFVGADVPEAPEPAVRVIDDLLYKSKGGRGRPIYADRAQTHIYRIPAAGGAP 183 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFIN 304 + + + + +S +G+ + + D I+ VD+ S A L++ + Sbjct: 184 EPLTSGPFNEHSTTWSPDGRYIAFVSNRTDRPDDIQQSEIWKVDIHSKAITPLSDHRGLA 243 Query: 305 ISASYSPDSSQIVFESDRE--GKE-------QLYVMQSNGSDQKRISQDKEASYFDPVWS 355 ++SP I F + G + ++ ++G + +++ + W Sbjct: 244 YQPAWSPKGGHIAFLATPGQTGTNDSPAEDTHIALIPADGGQMRYLTKSLDRRIEHLRWH 303 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKD 379 P G I FT ++ + + Sbjct: 304 PSGKYIYFTAGDRGDTSVYRVSIE 327 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 54/233 (23%) Query: 260 ILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 P S + + DE D+ V +T I +SPD Sbjct: 24 AGTPLLSPDDRFLAYHVAVADYDADERYDLIMVTPADQTA-PVTIARGIAHG--WSPDGR 80 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-------DPVWSPQGDLIAFT--- 364 ++++E +L++ + + + +++ E++YF + +WSP G IAF Sbjct: 81 ELLYE---TANGELHIYTVSTAASRLLTRRSESAYFINHLALNNCIWSPDGQSIAFVGAD 137 Query: 365 -----------------KFSGEKF----------AIGVMKKDGSQERLLVEDSNLQAP-T 396 K G + I + G L + T Sbjct: 138 VPEAPEPAVRVIDDLLYKSKGGRGRPIYADRAQTHIYRIPAAGGAPEPLTSGPFNEHSTT 197 Query: 397 WSPSGRSLIFSRKKDGDTG----SKLYSIDLNGRNETLINTP-AYASDPQWVG 444 WSP GR + F + S+++ +D++ + T ++ A P W Sbjct: 198 WSPDGRYIAFVSNRTDRPDDIQQSEIWKVDIHSKAITPLSDHRGLAYQPAWSP 250 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 16/196 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + + + G LT S +SP+ + +A+ + + + + Sbjct: 166 ADRAQTHIYRIPAAGGAPEPLT-SGPFNEHSTTWSPDGRYIAFVSNRTDRPDDIQQSEIW 224 Query: 246 ----IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA---------MDIYSVDLQSN 292 +A + + R + P +S G + I + Sbjct: 225 KVDIHSKAITPLSDHRGLAYQPAWSPKGGHIAFLATPGQTGTNDSPAEDTHIALIPADGG 284 Query: 293 ATERLTNTLFINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 LT +L I + P I F + G +Y + + + + Q + + Sbjct: 285 QMRYLTKSLDRRIEHLRWHPSGKYIYFTAGDRGDTSVYRVSIENNHIETV-QGGKGCISE 343 Query: 352 PVWSPQGDLIAFTKFS 367 + QG+ + F K + Sbjct: 344 FCLTAQGEDMVFIKSN 359 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFS 220 YQ KG + + ++ + + ++ DG +RYLT S D+ + R+ Sbjct: 244 YQPAWSPKGGHIAFLATPGQTGTNDSPAEDTHIALIPADGGQMRYLTKSLDRRIEHLRWH 303 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ + + + D D VY + + + + + I ++ G+ + Sbjct: 304 PSGKYIYFTAGDRGDT-SVYRVSIE-NNHIETVQGGKGCISEFCLTAQGEDMVFIKSNTH 361 Query: 281 A-MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV----FESDREGKEQLYVMQSNG 335 +++ + E +T A S + Q FES + Q ++M+ Sbjct: 362 FPPELFRTKNKGAVVEPVTQENA----AWLSTKALQPADPFWFESFDGMQVQGWLMKPVA 417 Query: 336 SDQKR------ISQDKEASYFDPVW-------SPQGDLIAFTKFSGE 369 D R + + F + S G + + G Sbjct: 418 FDPSRKHPLILVIHGGPHNMFGHDFDERFHLLSQAGYAVVYINPRGS 464 >gi|159896545|ref|YP_001542792.1| WD40 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159889584|gb|ABX02664.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus ATCC 23779] Length = 620 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 99/323 (30%), Gaps = 46/323 (14%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP----- 217 Y + + S G + M+ DG++ + L S D P Sbjct: 301 YGHLGTPWNSSEPSLPIAFGSKRDGGAEWDTYAMNGDGSS-QLLYASNDSKETVPYSWVR 359 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG-----------------NFRSMI 260 + P++ K+ + + + D R+ S Sbjct: 360 SWDPSKVKL-FVDSRRGNGSNRQIWTVGADGTMTRVTYTDGTPTPPGVPYQGYVGTPSND 418 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 S +G + + I+ + ++T + + S+S D + + S Sbjct: 419 FNASVSPDGSKMAFVSDRSGKPQIFVSYTNGASQTQVTLDDCDHQTPSWSADGRYLYWAS 478 Query: 321 DREGKEQLYVMQSNGS------------------DQKRISQDKEASYFDPVWSPQGDLIA 362 + + + ++ + ++ ++ + P SP G I Sbjct: 479 NCGTNAKYNIYRAELNWLADQPSNDYPYLSLELRNKVNLTNSTTSDNGFPRVSPDGTKIV 538 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 FT + +M DG+ + L S AP+W G + F +DG+ +Y + Sbjct: 539 FTSNRDGNSEVYLMNADGTNQTRLTNSSAEDGAPSWKLDGTKIAFDSNRDGNW--NVYVM 596 Query: 422 DLNGRNE-TLINTPAYASDPQWV 443 + +G + L N A W Sbjct: 597 NTDGTGQAQLTNNSADDRWNVWG 619 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 35/260 (13%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPAS-----WRKIAHTISDDIYQSITGEKG 171 + G R ++W V + + + ++ T S+D S++ + Sbjct: 372 SRRGNGSNR---QIWTVGADGTMTRVTYTDGTPTPPGVPYQGYVGTPSNDFNASVSPDG- 427 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT- 230 S++ FVS+ K + V +GA+ +T D P +S + + + +A+ Sbjct: 428 ---SKMAFVSDR----SGKPQIFVSYTNGASQTQVTLD-DCDHQTPSWSADGRYLYWASN 479 Query: 231 ------YDDEDILRVYLMDTRIDRAPKRIGNFR----------SMILAPRFSSNGKRALI 274 Y+ +L D + P R S PR S +G + + Sbjct: 480 CGTNAKYNIYRAELNWLADQPSNDYPYLSLELRNKVNLTNSTTSDNGFPRVSPDGTKIVF 539 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + +D ++Y ++ RLTN+ + + S+ D ++I F+S+R+G +YVM ++ Sbjct: 540 TSNRDGNSEVYLMNADGTNQTRLTNSSAEDGAPSWKLDGTKIAFDSNRDGNWNVYVMNTD 599 Query: 335 GSDQKRISQDKEASYFDPVW 354 G+ Q +++ + A VW Sbjct: 600 GTGQAQLT-NNSADDRWNVW 618 >gi|224023468|ref|ZP_03641834.1| hypothetical protein BACCOPRO_00170 [Bacteroides coprophilus DSM 18228] gi|224016690|gb|EEF74702.1| hypothetical protein BACCOPRO_00170 [Bacteroides coprophilus DSM 18228] Length = 1106 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 38/242 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R SP+ ++ + DI +V ++ S P +S +GK+ S Sbjct: 54 RISPDGTEILFCY--KGDIYKV----AASGGEAVQLTTQESYEATPVWSPDGKQIAFSSD 107 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKE 326 + MD++ + + A RLT ++++PD +VF + Sbjct: 108 RYGNMDVFVMPAEGGAARRLTVNSAAETPSAFTPDGKYVVFSASIQDPAASAMFPTSAMT 167 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-------------- 372 +LY + +G +++ A S AF + F Sbjct: 168 ELYKVPVSGGKTEQVL-GTPAELVSFNASGD----AFLYQDRKGFEDEWRKHHTSSITRD 222 Query: 373 IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I + + L + P W+P G+++ F ++D +Y+ L+ + Sbjct: 223 IWMYDAKTGKHTNLTARAGEDRNPVWAPDGKAVYFLSERD-KGSFNVYTFPLDNPKQVRA 281 Query: 432 NT 433 T Sbjct: 282 LT 283 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 34/215 (15%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 M + P + S +G L + D IY V +LT + +SP Sbjct: 42 GMAVTPLWMRDVRISPDGTEILFCYKGD----IYKVAASGGEAVQLTTQESYEATPVWSP 97 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 D QI F SDR G ++VM + G +R++ + A+ ++P G + F+ Sbjct: 98 DGKQIAFSSDRYGNMDVFVMPAEGGAARRLTVNS-AAETPSAFTPDGKYVVFSASIQDPA 156 Query: 367 ------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------- 411 + + + G + ++ + +++ SG + ++ +K Sbjct: 157 ASAMFPTSAMTELYKVPVSGGKTEQVLGTP-AELVSFNASGDAFLYQDRKGFEDEWRKHH 215 Query: 412 -GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L +P W Sbjct: 216 TSSITRDIWMYDAKTGKHTNLTARAGEDRNPVWAP 250 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 118/332 (35%), Gaps = 83/332 (25%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + I + + D LT R P ++P+ + V + + D+ VY Sbjct: 216 TSSITRDIWMYDAKTGKHTNLTA-RAGEDRNPVWAPDGKAVYFLSERDKGSFNVYTFPLD 274 Query: 246 IDRAPKRIGNFRSM--------------------------ILAP---------------- 263 + + + +FR+ +P Sbjct: 275 NPKQVRALTSFRTHPVRFLSMSGNGMLCYTYDGEIYTQNPDGSPKKVAVSLTRDDEQLPA 334 Query: 264 RFS-----------SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 RFS +GK+ +V+ +++ ++ T+++T+T S+ D Sbjct: 335 RFSFTRGAREAVPSPDGKQVAFTVRG----EVFVTSVEYGTTKQITHTPETEEGLSFGAD 390 Query: 313 SSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + +V+ S+R G LY+ + +++ + K P +SP G + Sbjct: 391 NRTLVYASERGGNWGLYLAKIGRKEDANFPNATLIEEEALLPSKTVERTYPQFSPDGKEV 450 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGD 413 AF + + V+ + + R + + S + +WSP G+ L F + D Sbjct: 451 AFIEDRN---RLMVVNLETKKVRQITDGSTWYSTGGGFNYSWSPDGKWFTLEFIGNRH-D 506 Query: 414 TGSKLYSIDLNGRNE--TLINTPAYASDPQWV 443 S + + +G+ E L N+ +++ P+WV Sbjct: 507 PYSDVALVSADGKGELVNLTNSGYFSASPRWV 538 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 102/270 (37%), Gaps = 42/270 (15%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT ++ P +SP+ +++A+++ + + V++M Sbjct: 66 YKGDIYKVAASGGEAVQLTT-QESYEATPVWSPDGKQIAFSSDRYGN-MDVFVMPAE-GG 122 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + F+ +GK + S + ++Y V + TE++ Sbjct: 123 AARRLTVNSAAETPSAFTPDGKYVVFSASIQDPAASAMFPTSAMTELYKVPVSGGKTEQV 182 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T +S ++ +++ DR+G +++ + ++ Sbjct: 183 LGTPAELVS--FNASGDAFLYQ-DRKGFEDEWRKHHTSSITRDIWMYDAKTGKHTNLT-A 238 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG-SQERLLVE--DSNLQAPTWSPS 400 + +PVW+P G + F ++ F + D Q R L ++ + S + Sbjct: 239 RAGEDRNPVWAPDGKAVYFLSERDKGSFNVYTFPLDNPKQVRALTSFRTHPVRFLSMSGN 298 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 G L ++ ++Y+ + +G + + Sbjct: 299 G-MLCYTYD------GEIYTQNPDGSPKKV 321 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 98/259 (37%), Gaps = 36/259 (13%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-- 263 L PS+ P+FSP+ ++VA+ +D + L V ++T+ R + S Sbjct: 430 LLPSKTVERTYPQFSPDGKEVAF--IEDRNRLMVVNLETKKVRQITDGSTWYSTGGGFNY 487 Query: 264 RFSSNGKRA---LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFE 319 +S +GK I + D D+ V LTN+ + + S + D + I+F Sbjct: 488 SWSPDGKWFTLEFIGNRHDPYSDVALVSADGKGELVNLTNSGYFSASPRWVMDGNAILFA 547 Query: 320 SDREGKE-----------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +DR G L M + D+ R+S++ + + + Sbjct: 548 TDRYGMRSHASWGSQEDVMLVFMNQDAYDKFRLSKEDYELQKELEKEQKKESEKDADSKD 607 Query: 369 EKFAIG------------VMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 +K V++ DG RL S+L + S G L + +G Sbjct: 608 KKKKEDGDKKESDKVKEVVVELDGIQDRIVRLTPNSSDLGSAILSKDGEKLYYLAAFEG- 666 Query: 414 TGSKLYSIDLNGRNETLIN 432 G L+ IDL R+ L++ Sbjct: 667 -GYDLWKIDLRKRDVKLLH 684 >gi|262384205|ref|ZP_06077341.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295103|gb|EEY83035.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1077 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 138/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W ++ S I + + DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENITNNEAQDIFPMWIGDEIYFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + + I+FE N + + Sbjct: 236 DRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFPSSFGNTIVFE-----NGGYIYKMDAASK 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + I + I + S G+R +++ + +++++ + Sbjct: 291 KPEKVNVTLASDNVYARSEIKDGSKYITSASLSPKGERMVVTARG----EVFNIPVDKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T A +SPD I + SD G+ +LY+ S G + +++++ + Sbjct: 347 TKNITRTPGAHERDAQWSPDGKHIAYISDATGETELYLQDSEGGEPIQLTKNNDTYIRTF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q + + + ++SP L +SR Sbjct: 407 QWSPDSKKIVYTDRKN---RINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVS 463 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + S +Y D+ G+ E + +P +++D +++ F Sbjct: 464 DNNF-SIVYVYDIAGKKEYPVTDKWYESYSPVFSTDGKYLVF 504 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 33/339 (9%) Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGK 142 + + ITN ++ F W + + + +++ K ++ Sbjct: 206 PEKKSVENITNNEAQDIFPMW--------IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVT 257 Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 F D + S G F + S + + D Sbjct: 258 NFTE------------YDVKFPSSFGNTIVFENGGYIYKMDAASKKPEKVNVTLASDNVY 305 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + + SP +++ + V+ + + Sbjct: 306 ARSEIKDGSKYITSASLSPKGERMVVTARGE-----VFNIPVDKGVTKNITRTPGAHERD 360 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFES 320 ++S +GK ++Y D + +LT N +I +SPDS +IV+ Sbjct: 361 AQWSPDGKHIAYISDATGETELYLQDSEGGEPIQLTKNNDTYIRTF-QWSPDSKKIVYT- 418 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKD 379 DR K ++ ++ + ISQ + +SP + + +++ S F+I V Sbjct: 419 DR--KNRINLLDVSNKQLTTISQSLLGEARNVSFSPDNNWLTYSRVSDNNFSIVYVYDIA 476 Query: 380 GSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSK 417 G +E + + +P +S G+ L+F+ +D + Sbjct: 477 GKKEYPVTDKWYESYSPVFSTDGKYLVFTSARDFNPTYS 515 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGSEIVFSYAGD----LYKVPATGGEAQRLTSYVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M S+G + RI+ D P W+P G+ I + + F + Sbjct: 90 VYTMPSSGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLY 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVNKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 207 EKKSVENITNNEAQDIFPMWIG 228 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 100/280 (35%), Gaps = 48/280 (17%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M + P Sbjct: 45 DLYKVPATGGEAQRLT-SYVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPS-SGGEPL 101 Query: 252 RIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 RI + + P ++ +G + + + +Y+V+ + +E + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGNGIVYRNRISDGFSGKLYTVNKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V + I+ + E Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPEKKSVENIT-NNE 218 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 A P+W GD I F + V Q + + +++ P S G ++ Sbjct: 219 AQDIFPMW--IGDEIYFLSDRDYTMNLFVYNTKTKQTSKVTNFTEYDVKFP--SSFGNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +F + G +Y +D + N TL + YA Sbjct: 275 VF------ENGGYIYKMDAASKKPEKVNVTLASDNVYARS 308 >gi|219753666|emb|CAB60199.2| P100GA2 protein [Haemonchus contortus] Length = 825 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 86/221 (38%), Gaps = 31/221 (14%) Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 T+D +++++ + K++ + S +GK + + +++++ Sbjct: 548 TVYTWDIYPEFDIFMVN-KYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWT 606 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-------------------- 326 ++ ++T + +SPD ++VF + R + Sbjct: 607 MNTDGTNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLT 666 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDG 380 ++YV+ +G + K+++ AS+ P + P I F+ FA+ V+ +DG Sbjct: 667 EIYVVDVDGKNLKQVTNFGVASW-APYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDG 725 Query: 381 SQERLLVEDSNLQ---APTWSPSGRSLIFSRKKDGDTGSKL 418 + + Q P ++ +G L++ ++ G+ L Sbjct: 726 TGLERVTFGEGYQFNAFPMFNRAGNKLVWGSSRNRTKGASL 766 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 26/185 (14%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + DI+ V+ N ++LT+ N A SPD I F S R G +L+ M Sbjct: 549 VYTWDIYPEFDIFMVNKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMN 608 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------------------A 372 ++G++ +++++ +SP G + F + Sbjct: 609 TDGTNLHQVTKE-YGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTE 667 Query: 373 IGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD---GDTGS-KLYSIDLNGRN 427 I V+ DG + + AP + P + +IFS + GS LY I+ +G Sbjct: 668 IYVVDVDGKNLKQVTNFGVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTG 727 Query: 428 ETLIN 432 + Sbjct: 728 LERVT 732 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 36/228 (15%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Q + + DI +V +D +I S +GK+ + + ++ + Sbjct: 144 QSGHVWDVFPTYDIFKVNEYGNVLD----QITKNDVYDSEAFISPDGKKIVYTSKQSGDL 199 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-------------------- 322 D++ D+ +LT + AS+SPD +IVF + R Sbjct: 200 DLWITDINGALKIQLTKKKGYDGGASFSPDGKKIVFHASRPKTNEEIAIYDRLLKNDLVA 259 Query: 323 EGKEQLYVMQSN-----GSDQKRI-SQDKEASYFDPVWSPQGDLIAFTKF----SGEKFA 372 K +LYVM++N G+D+K + Q + + P + I F+ ++ Sbjct: 260 TSKMELYVMEANTVCGKGTDEKPLFKQPRGGLDWTPYYHTDNKRIIFSSNMNSTKPNEYH 319 Query: 373 IGVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 + ++ +DG+ ER+ + A P +S G+ +++S + L Sbjct: 320 LYIVNEDGTGLERVTFGNGYFNAFPVFSHDGKKVVWSSNRGSTKKGDL 367 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 81/209 (38%), Gaps = 30/209 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + ++++ G NI E SP+ + +A+ + D L ++ M+T Sbjct: 555 YPEFDIFMVNKYG-NIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGD-LELWTMNTD-G 611 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA--------------------MDIYSV 287 ++ FS +GKR + + + +IY V Sbjct: 612 TNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVV 671 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRI 341 D+ +++TN + + Y PD+ +I+F S+ G LYV+ +G+ +R+ Sbjct: 672 DVDGKNLKQVTNFGVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTGLERV 731 Query: 342 SQDKEASYFD-PVWSPQGDLIAFTKFSGE 369 + + + P+++ G+ + + Sbjct: 732 TFGEGYQFNAFPMFNRAGNKLVWGSSRNR 760 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 77/211 (36%), Gaps = 36/211 (17%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + ++ G N+ D E SP+ +K+ Y + D + L T I+ A Sbjct: 155 YDIFKVNEYG-NVLDQITKNDVYDSEAFISPDGKKIVYTSKQSGD---LDLWITDINGAL 210 Query: 251 K-RIGNFRSMILAPRFSSNGKRALISVQKDEA--------------------MDIYSVDL 289 K ++ + FS +GK+ + + + M++Y ++ Sbjct: 211 KIQLTKKKGYDGGASFSPDGKKIVFHASRPKTNEEIAIYDRLLKNDLVATSKMELYVMEA 270 Query: 290 -----QSNATERLTNTL--FINISASYSPDSSQIVFESDREGK----EQLYVMQSNGSDQ 338 + + L ++ + Y D+ +I+F S+ LY++ +G+ Sbjct: 271 NTVCGKGTDEKPLFKQPRGGLDWTPYYHTDNKRIIFSSNMNSTKPNEYHLYIVNEDGTGL 330 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R++ PV+S G + ++ G Sbjct: 331 ERVTFGNGYFNAFPVFSHDGKKVVWSSNRGS 361 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 23/148 (15%) Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 V+ D + ++++ G+ K+++ + + + V SP G IAFT + M Sbjct: 549 VYTWDIYPEFDIFMVNKYGNIVKQLTDEPGYNA-EAVLSPDGKTIAFTSIRTGDLELWTM 607 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG------------------DTGSK 417 DG+ + ++ +SP G+ L+F + T ++ Sbjct: 608 NTDGTNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTE 667 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGF 445 +Y +D++G+N + AS W + Sbjct: 668 IYVVDVDGKNLKQVTNFGVAS---WAPY 692 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 96/306 (31%), Gaps = 47/306 (15%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 +D+Y S D +I++ S+ L + D +GA ++ + F Sbjct: 173 NDVYDSEAFISPDGK-KIVYTSKQSGD----LDLWITDINGA-LKIQLTKKKGYDGGASF 226 Query: 220 SPNQQKVAYATYDDEDILRVYLMDT-------------------------RIDRAPKRIG 254 SP+ +K+ + + + + D D P Sbjct: 227 SPDGKKIVFHASRPKTNEEIAIYDRLLKNDLVATSKMELYVMEANTVCGKGTDEKPLFKQ 286 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQSNATERLTNTLFI-NISASY 309 + P + ++ KR + S + +Y V+ ER+T N + Sbjct: 287 PRGGLDWTPYYHTDNKRIIFSSNMNSTKPNEYHLYIVNEDGTGLERVTFGNGYFNAFPVF 346 Query: 310 SPDSSQIVFESDRE----GKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S D ++V+ S+R G L++ G D S +KE + + A Sbjct: 347 SHDGKKVVWSSNRGSTKKGDLNLFIADWVDPGRDTDDESDEKEELRTNRIPKKATQKNAM 406 Query: 364 TKFSGEKFAI-GVMKKDG----SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 E V+ G + L +S +I G T ++ Sbjct: 407 RWQDTETAPYDNVVHYTGERRLKNVKQLTFRGQNAEGYFSYDDSKIILQATGYGTTCDQI 466 Query: 419 YSIDLN 424 Y +DLN Sbjct: 467 YELDLN 472 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + I + + G+ + ++ + + SP G+ ++++ K+ GD L+ D+NG + Sbjct: 155 YDIFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVYTSKQSGD--LDLWITDINGALKI 212 Query: 430 LIN-------TPAYASDPQWVGF 445 + +++ D + + F Sbjct: 213 QLTKKKGYDGGASFSPDGKKIVF 235 >gi|85713331|ref|ZP_01044349.1| Acylaminoacyl-peptidase [Idiomarina baltica OS145] gi|85692851|gb|EAQ30831.1| Acylaminoacyl-peptidase [Idiomarina baltica OS145] Length = 664 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 64/314 (20%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-LRV 239 S + L + +G +IR LT + P +SP+ +++A+ + + + Sbjct: 44 SMDIKHDQKTGRLWTVKPNG-DIRPLTGDSAH-EWSPVWSPDGKRLAFISDASGSPQIAI 101 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS------------------------ 275 Y DT + S + +S NG S Sbjct: 102 YWTDTGKHAVVGELTQTPSSL---SWSPNGDYIAFSQFTPIKSAAPVSLPGKPEGADWTA 158 Query: 276 ----------------VQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVF 318 D IY + + ++T+ + + +S D QI F Sbjct: 159 PPQFVDKDNYRYDGGGYVSDGYQQIYVISAEGGTARQITDDEYNSGGDLEWSADGKQIYF 218 Query: 319 ESDREG-------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 ++R ++Y +Q + + ++ D+ P SP GD +AF Sbjct: 219 SANRRSDAFRQPMNSEIYAVQVDTGQVRTLT-DRNGPDGAPKRSPNGDWLAFIGNDDNGM 277 Query: 372 -----AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + VM DG+Q R+L D ++ W G + F+ G +L DL+ Sbjct: 278 SSQISRLYVMSVDGTQSRVLTSELDRSVTGFAWDTDGEGIYFTYDDKG--VGQLARTDLD 335 Query: 425 GRNETLINTPAYAS 438 G E L + S Sbjct: 336 GDYEPLTDRVGGLS 349 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 94/299 (31%), Gaps = 68/299 (22%) Query: 212 QILFEPRFSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + P P+ + D L + + + + + +P +S + Sbjct: 24 EYAASPALHPSGDYGVFVRQSMDIKHDQKTGRLWTVKPNGDIRPLTGDSAHEWSPVWSPD 83 Query: 269 GKRALISVQKDEAMDIYSVDLQSNA---TERLTNTLFINISASYSPDSSQIVFE------ 319 GKR + I + LT T S S+SP+ I F Sbjct: 84 GKRLAFISDASGSPQIAIYWTDTGKHAVVGELTQTPS---SLSWSPNGDYIAFSQFTPIK 140 Query: 320 ----------------------------------SDREGKEQLYVMQSNGSDQKRISQDK 345 +G +Q+YV+ + G ++I+ D+ Sbjct: 141 SAAPVSLPGKPEGADWTAPPQFVDKDNYRYDGGGYVSDGYQQIYVISAEGGTARQITDDE 200 Query: 346 EASYFDPVWSPQGDLIAFTK-------FSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTW 397 S D WS G I F+ I ++ D Q R L + + AP Sbjct: 201 YNSGGDLEWSADGKQIYFSANRRSDAFRQPMNSEIYAVQVDTGQVRTLTDRNGPDGAPKR 260 Query: 398 SPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTP--------AYASDPQWVGF 445 SP+G L F D S+ LY + ++G ++ + A+ +D + + F Sbjct: 261 SPNGDWLAFIGNDDNGMSSQISRLYVMSVDGTQSRVLTSELDRSVTGFAWDTDGEGIYF 319 >gi|116624085|ref|YP_826241.1| peptidase S9B dipeptidylpeptidase IV subunit [Candidatus Solibacter usitatus Ellin6076] gi|116227247|gb|ABJ85956.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 577 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 15/244 (6%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRIGNFRSMILA 262 + + D P SP+ +++AY+ + + ++ + P ++ +A Sbjct: 41 KVQISTGDASESYPSISPDGKRLAYSARESSKVSAFHVFVRELPSGKPLQLTKGEGNDIA 100 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN--TLFINISA----SYSPDSSQI 316 P +S +G +D + + ++ + S+ PDS + Sbjct: 101 PVWSPDGGTLAFVRVEDGKRECIVMPADGGDERKIAELGAAADSTQPAPEVSWKPDSKSL 160 Query: 317 VFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFT-KFSGEKFA 372 V + E + L + +G +RI+ E + D P + G IAF + Sbjct: 161 VVVQNGEKQLPGLATLTLDG-KLQRITNPGEGTEGDSTPAVAASGSSIAFVRHTQNDGAD 219 Query: 373 IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 I + G R L +D ++ WS G+ LI+S + G G +++ + G + Sbjct: 220 IFLCDATGGGVRRLTFDDRGIRGIAWSHDGQDLIYSANRAG--GWRIWRVPAYGGSPREY 277 Query: 432 NTPA 435 Sbjct: 278 TLGG 281 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 101/307 (32%), Gaps = 64/307 (20%) Query: 193 LCVMDRDGANIRYLTPS-RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + DG R P + P + + +A+ + D ++L D + Sbjct: 173 LATLTLDGKLQRITNPGEGTEGDSTPAVAASGSSIAFVRHTQNDGADIFLCD-ATGGGVR 231 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT------------- 298 R+ I +S +G+ + S + I+ V + T Sbjct: 232 RLTFDDRGIRGIAWSHDGQDLIYSANRAGGWRIWRVPAYGGSPREYTLGGKQAYYPTVGR 291 Query: 299 --------------------------------NTLFINISASYSPDSSQIVFESDREGKE 326 + +SPD +++ SD+ G E Sbjct: 292 NRLAYTDSPTVSAIWRATLGGGPDAVEERALLRSTGRESMPVWSPDGTRVADVSDQTGSE 351 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ--ER 384 +++V +NG D+ +I+Q K WSP + F + + + + Q R Sbjct: 352 EIFVSDANGQDRVQITQFKGPRVKSVRWSPDSKGLIFDLSTDHGWEVFAVPATAGQKPVR 411 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI------NTPAYAS 438 +L+ N ++S G+++ F + +++ G N + P ++ Sbjct: 412 VLL---NANNASYSHDGKTIYFQSR------GEIWKATAAGGNPQTLAKDRGGAQPVESA 462 Query: 439 DPQWVGF 445 D ++V + Sbjct: 463 DGKYVYY 469 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 14/205 (6%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE---AMDIYSVDLQSNATERLTNTLFINISAS 308 +I + P S +GKR S ++ A ++ +L S +LT +I+ Sbjct: 43 QISTGDASESYPSISPDGKRLAYSARESSKVSAFHVFVRELPSGKPLQLTKGEGNDIAPV 102 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-----VWSPQGDLIAF 363 +SPD + F +GK + VM ++G D+++I++ A+ W P + Sbjct: 103 WSPDGGTLAFVRVEDGKRECIVMPADGGDERKIAELGAAADSTQPAPEVSWKPDSKSLVV 162 Query: 364 TKFSGEKF-AIGVMKKDGSQERLLVEDSNLQA---PTWSPSGRSLIFSRKKDGDTGSKLY 419 + ++ + + DG +R+ + P + SG S+ F R D G+ ++ Sbjct: 163 VQNGEKQLPGLATLTLDGKLQRITNPGEGTEGDSTPAVAASGSSIAFVRHTQND-GADIF 221 Query: 420 SIDLNGRNETLINTPAYASDP-QWV 443 D G + W Sbjct: 222 LCDATGGGVRRLTFDDRGIRGIAWS 246 Score = 96.6 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 93/304 (30%), Gaps = 63/304 (20%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 T S I FV + G + + D G +R LT D+ + +S + Q + Sbjct: 197 TPAVAASGSSIAFVRHTQNDGA---DIFLCDATGGGVRRLTFD-DRGIRGIAWSHDGQDL 252 Query: 227 AYATYD-----------DEDILRVYLMDTRIDRAP------------------------- 250 Y+ R Y + + P Sbjct: 253 IYSANRAGGWRIWRVPAYGGSPREYTLGGKQAYYPTVGRNRLAYTDSPTVSAIWRATLGG 312 Query: 251 -------KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + P +S +G R + + +I+ D ++T Sbjct: 313 GPDAVEERALLRSTGRESMPVWSPDGTRVADVSDQTGSEEIFVSDANGQDRVQITQFKGP 372 Query: 304 NI-SASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFDPVWSPQGDLI 361 + S +SPDS ++F+ + +++ + + G R+ + + +S G I Sbjct: 373 RVKSVRWSPDSKGLIFDLSTDHGWEVFAVPATAGQKPVRVLL----NANNASYSHDGKTI 428 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F I G + L +D P S G+ + + ++ ++ + Sbjct: 429 YFQSRG----EIWKATAAGGNPQTLAKDRGGAQPVESADGKYVYYRARRS------IFRV 478 Query: 422 DLNG 425 + G Sbjct: 479 PVAG 482 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 103/300 (34%), Gaps = 67/300 (22%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +R+ + VS I + +L D R L S + P +SP+ +VA + Sbjct: 289 VGRNRLAYTDSPTVSAIWRATLGG-GPDAVEERALLRSTGR-ESMPVWSPDGTRVADVS- 345 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 D +++ D + +I F+ + + R+S + K + + D ++++V Sbjct: 346 DQTGSEEIFVSDAN-GQDRVQITQFKGPRVKSVRWSPDSKGLIFDLSTDHGWEVFAVPAT 404 Query: 291 SNA--TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + L N +ASYS D I F+S + +++ + G + + +++D+ + Sbjct: 405 AGQKPVRVLLNAN----NASYSHDGKTIYFQS----RGEIWKATAAGGNPQTLAKDRGGA 456 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL---------------------- 386 PV S G + + F + V +G + + Sbjct: 457 --QPVESADGKYVYYRARR-SIFRVPVAGGEGEEAIVPEHDLSFSTTIQPVKKGVYYAEF 513 Query: 387 ---------------------------VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + N A + SP G+ L++ R T L Sbjct: 514 ERSARGTAVSFYDFTTKKSTVAFRMKNTDFWNGAAFSVSPDGKYLLYPRVDQSQTNLILV 573 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL--NGRNETLINTPAYAS 438 + ++ D++ P+ SP G+ L +S ++ + + +G+ L Sbjct: 40 KKVQISTGDASESYPSISPDGKRLAYSARESSKVSAFHVFVRELPSGKPLQLTKGEGNDI 99 Query: 439 DPQWVG 444 P W Sbjct: 100 APVWSP 105 >gi|291084523|ref|ZP_06537913.2| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 120 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 3/121 (2%) Query: 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVS 70 M + + +HA V++ + P+ + K+ + +V+ Sbjct: 1 MMKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVA 60 Query: 71 KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRL 130 DL+ S FN + + Q+ + + W++LG ++ G V V ++L Sbjct: 61 ADLRNSGKFNPLDRSRLPQQPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNVAYQL 119 Query: 131 W 131 Sbjct: 120 V 120 >gi|168057343|ref|XP_001780675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667943|gb|EDQ54561.1| predicted protein [Physcomitrella patens subsp. patens] Length = 710 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 101/268 (37%), Gaps = 45/268 (16%) Query: 216 EPRFSPNQQKVAYA-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA-- 272 P SP+ V++ + +D L V +D +R R S + R+ GK Sbjct: 389 FPSISPDGSLVSFVDSGNDSSTLAVMKLDGSENRVIHR-----SNVFGERWDPKGKTIYA 443 Query: 273 ----LISVQKDEAMDIYSVDLQSNAT---------ERLTN-TLFINISASYSPDSSQIVF 318 + + K + D + + LT N SPD +VF Sbjct: 444 SQGRVFASVKTVVRIVAIQDSDTADLGADETSHNYKYLTKEGTGNNAFPCPSPDGKYVVF 503 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSG-----EKF 371 S R G++ LY+M + G ++K + + E + D P WSP + IAF+ F Sbjct: 504 RSGRTGRKNLYIMDAAGGEEKYLRRLTEGRWRDTMPAWSPDNEWIAFSSNRAHPTGERSF 563 Query: 372 AIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDG------------DTGS 416 ++ +++ +G+ +L++ +SP + + F+ G Sbjct: 564 SLYLIRPNGTDLHMLLDTGVGGLAMHAVFSPDSKRIAFTSNWAGVSAEPISFPHAYQPYG 623 Query: 417 KLYSIDLNGRNETLINTPAY-ASDPQWV 443 ++ I+++G T + AY P W Sbjct: 624 TIFVINIDGTGLTRLTHNAYEDGTPTWG 651 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 97/327 (29%), Gaps = 90/327 (27%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR--APKRIGNF 256 DG+ R + + P + + V + D+ ++ ++ +R+ Sbjct: 234 DGSQRRMIVRNGG----WPTWM-DDNTVYFHRIADDGWWSIFKVNVSDTSADQAERVTPS 288 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS---------- 306 P S +GK ++ ++ I +L+S LT + N Sbjct: 289 GVHAFTPAASRSGKWIAVATRRASFRHIEIFELESKKFFPLTALINPNTHHYNPFVSPSS 348 Query: 307 -----------------------------------------ASYSPDSSQIVFESDREGK 325 S SPD S + F Sbjct: 349 NKIGYHRCRGLDQDAQTVDPQIEYQKSPLPGVSLARIKGSFPSISPDGSLVSFVDSGNDS 408 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI------AFTKFSGEKFAIGVMKKD 379 L VM+ +GS+ + I ++ F W P+G I F + + D Sbjct: 409 STLAVMKLDGSENRVI---HRSNVFGERWDPKGKTIYASQGRVFASVKTVVRIVAIQDSD 465 Query: 380 GSQE---------RLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + L + N P SP G+ ++F + G LY +D G E Sbjct: 466 TADLGADETSHNYKYLTKEGTGNNAFPCPSPDGKYVVFRSGRTGRK--NLYIMDAAGGEE 523 Query: 429 T----------LINTPAYASDPQWVGF 445 PA++ D +W+ F Sbjct: 524 KYLRRLTEGRWRDTMPAWSPDNEWIAF 550 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 30/215 (13%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD----- 279 + A R+ L+ R++ K N R ++ F +S ++D Sbjct: 115 RFAIDRLPTRSSRRIELLADRLNAPSKAFLNDRPSMIGDVF------IFVSTEEDVGKPV 168 Query: 280 -EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ---------LY 329 +YS++ ++ +RLT + S + SP + S+ Q LY Sbjct: 169 QGWNAVYSLNFITSVVKRLTPPGITDYSPAVSPSGEWVAVGSNEGRGWQREIEALNLDLY 228 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQ----ER 384 + ++ Q+R+ P W + F + ++I + + ER Sbjct: 229 IFKAEDGSQRRMIVRNGG---WPTWMDDNT-VYFHRIADDGWWSIFKVNVSDTSADQAER 284 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + P S SG+ + + ++ +++ Sbjct: 285 VTPSGVHAFTPAASRSGKWIAVATRRASFRHIEIF 319 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 55/202 (27%) Query: 118 KEGKDRLRV---------EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 + V + D ++ ++ WR S D Sbjct: 494 PSPDGKYVVFRSGRTGRKNLYIMDAAGGEEKYLRRLT--EGRWRDTMPAWSPD------N 545 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR-DQILFEPRFSPNQQKVA 227 E F+S + + +G SL ++ +G ++ L + + FSP+ +++A Sbjct: 546 EWIAFSS-----NRAHPTGERSFSLYLIRPNGTDLHMLLDTGVGGLAMHAVFSPDSKRIA 600 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + + N+ + P I+ + Sbjct: 601 FTS------------------------NWAGVSAEP--------ISFPHAYQPYGTIFVI 628 Query: 288 DLQSNATERLTNTLFINISASY 309 ++ RLT+ + + + ++ Sbjct: 629 NIDGTGLTRLTHNAYEDGTPTW 650 >gi|325915282|ref|ZP_08177602.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas vesicatoria ATCC 35937] gi|325538475|gb|EGD10151.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas vesicatoria ATCC 35937] Length = 781 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 11/231 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ ++ L+ T + P+ + I Sbjct: 218 RPYQVITAGGGFDLTPSLSPDGSMVAYASLTNDRPGTSILVKTTDNAYPRVLETPAPGIS 277 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q D + I + R + +S S+SPD + Sbjct: 278 DRLPAWSPDGREIAFSRQAPDGSCRIMIAAAAGESAAREVVRCDGADMLSFSWSPDGRAL 337 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 +F S G ++ + +S + + + FD P +SP G I F + Sbjct: 338 LFGSMTGARGAPRIRRLDLETGQWHALSYNAQPADFDYAPRYSPDGQWIVFLRNPQLGDL 397 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + GS ERL ++++++ +W P G SL+F R+ D + ++LY +DL Sbjct: 398 WRIPAQGGSAERLTHDNADIRGWSWLPDGSSLVFGRRVDSE--ARLYRLDL 446 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 76/462 (16%), Positives = 136/462 (29%), Gaps = 89/462 (19%) Query: 41 NSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRF 100 +S + +A V +SQ + + PR Sbjct: 127 SSGRQEAMQVAPLPTDEASTAAEAVH-------------RPMSQAAMSPSPLLAAATPRR 173 Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISD 160 W +L + V+ L + DV ++G SP Sbjct: 174 GRWMALAVAGITLALVLGLAARTLWLRAPATDVATSTAVLG-----SPKRP--------- 219 Query: 161 DIYQSITGEKGDFNSRILFVSESVV------SGIIKNSLCVMDRDGANIRYLTPSRDQI- 213 YQ IT G + L S+V + S+ V D A R L I Sbjct: 220 --YQVITAGGGFDLTPSLSPDGSMVAYASLTNDRPGTSILVKTTDNAYPRVLETPAPGIS 277 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRA 272 P +SP+ +++A++ + R+ + + A + + + + +S +G+ Sbjct: 278 DRLPAWSPDGREIAFSRQAPDGSCRIMIAAAAGESAAREVVRCDGADMLSFSWSPDGRAL 337 Query: 273 LISVQKD--EAMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDREGKEQ 327 L A I +DL++ L+ + + YSPD IVF + + Sbjct: 338 LFGSMTGARGAPRIRRLDLETGQWHALSYNAQPADFDYAPRYSPDGQWIVFLRNPQ-LGD 396 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK--------- 378 L+ + + G +R++ D A W P G + F + + + + Sbjct: 397 LWRIPAQGGSAERLTHD-NADIRGWSWLPDGSSLVFGRRVDSEARLYRLDLVDRSLHDLG 455 Query: 379 ---------------------------------DGS--QERLLVEDSNLQAPTWSPSGRS 403 +G + RL P +P GR Sbjct: 456 VDDAQAPDVAHGHLVFVQRKPQFGVYQVIHDPMNGGYIRRRLFASSGRDDQPMIAPDGRQ 515 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ-WVG 444 LIF+ + G G + G + A W Sbjct: 516 LIFASNRSGAYGLWWGDVGKPGSVRLIEGIRPDARQAADWSA 557 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD S + + S DR G L N + + Sbjct: 214 GSPKRPYQVITAGGGFDLTPSLSPDGSMVAYASLTNDRPGTSILVKTTDNAYPRVLETPA 273 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEK----FAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 S P WSP G IAF++ + + + ++E + + +++ + +WSP Sbjct: 274 PGISDRLPAWSPDGREIAFSRQAPDGSCRIMIAAAAGESAAREVVRCDGADMLSFSWSPD 333 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT---------PAYASDPQWVGFM 446 GR+L+F ++ +DL G+ L P Y+ D QW+ F+ Sbjct: 334 GRALLFGSMTGARGAPRIRRLDLETGQWHALSYNAQPADFDYAPRYSPDGQWIVFL 389 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 54/310 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 +LF S + G + ++ + + PR+SP+ Q + + D Sbjct: 337 LLFGSMTGARGAPRIRRLDLETGQWHALSYNAQPADFDYAPRYSPDGQWIVFLRNPQLGD 396 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 + R+ +R + R + +G + + D +Y +DL + Sbjct: 397 LWRIPAQGGSAERLTHDNADIRGW----SWLPDGSSLVFGRRVDSEARLYRLDLVDRSLH 452 Query: 295 ------------------------------------------ERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 453 DLGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIHDPMNGGYIRRRLFASSGRDDQPMIAPD 512 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q++F S+R G L+ R+ + + + WS + + + Sbjct: 513 GRQLIFASNRSGAYGLWWGDVGKPGSVRLIEGIRPDARQAADWSADSRQVLVSGSDADGH 572 Query: 372 A--IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS-RKKDGDTGSKLYSIDLNGRNE 428 A V G RL V + P + L+ DG T + LY D + Sbjct: 573 AALFEVTPSTGKTVRLPVPQARPLQAIHLPDPKRLLVVGAADDGHTFATLY--DRSSNPW 630 Query: 429 TLINTPAYAS 438 ++ T S Sbjct: 631 RVLATLQDVS 640 >gi|1335976|gb|AAB01192.1| apical gut membrane polyprotein [Haemonchus contortus] Length = 822 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 31/222 (13%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 A+ + DI +V +D +I S +GK+ + + ++ +D Sbjct: 145 SGHAWDVFPTYDIFKVNEYGNVLD----QITKNDVYDSEAFISPDGKKIVYTSKQSGDLD 200 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK------------------ 325 ++ D+ +LT + AS+SPD +IVF + R Sbjct: 201 LWITDINGALKIQLTKAKGYDGGASFSPDGEKIVFHASRPTTKDKIDIYDHLLENDLVAM 260 Query: 326 --EQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFSG----EKFAIGVMKK 378 +LYVM ++G D++ + + P + P I F+ + +F + ++ + Sbjct: 261 SEMELYVMNADGIDKRSVFKQPRGGLNWTPYYHPDNKRIIFSSNTNSTKPSEFHLYIVNE 320 Query: 379 DGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 DG+ ER+ A P +S G+ +++S + L Sbjct: 321 DGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNRGSTKKGDL 362 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 86/221 (38%), Gaps = 31/221 (14%) Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 T+D +++++ + K++ + S +GK + + +++++ Sbjct: 543 TVYTWDIYPEFDIFMVN-KYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWT 601 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-------------------- 326 ++ ++T + +SPD ++VF + R + Sbjct: 602 MNTDGTNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLT 661 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDG 380 ++YV+ +G + K+++ AS+ P + P I F+ FA+ V+ +DG Sbjct: 662 EIYVVDVDGKNLKQVTNFGVASW-APYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDG 720 Query: 381 SQERLLVEDSNLQ---APTWSPSGRSLIFSRKKDGDTGSKL 418 + + Q P ++ +G L++ ++ G+ L Sbjct: 721 TGLERVTFGEGYQFNAFPMFNRAGNKLVWGSSRNRTKGASL 761 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 26/185 (14%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + DI+ V+ N ++LT+ N A SPD I F S R G +L+ M Sbjct: 544 VYTWDIYPEFDIFMVNKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMN 603 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------------------A 372 ++G++ +++++ +SP G + F + Sbjct: 604 TDGTNLHQVTKE-YGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTE 662 Query: 373 IGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD---GDTGS-KLYSIDLNGRN 427 I V+ DG + + AP + P + +IFS + GS LY I+ +G Sbjct: 663 IYVVDVDGKNLKQVTNFGVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTG 722 Query: 428 ETLIN 432 + Sbjct: 723 LERVT 727 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 31/206 (15%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + ++ G N+ D E SP+ +K+ Y + D + L T I+ A Sbjct: 155 YDIFKVNEYG-NVLDQITKNDVYDSEAFISPDGKKIVYTSKQSGD---LDLWITDINGAL 210 Query: 251 K-RIGNFRSMILAPRFSSNGKRALISVQKDEAMD--------------------IYSVDL 289 K ++ + FS +G++ + + D +Y ++ Sbjct: 211 KIQLTKAKGYDGGASFSPDGEKIVFHASRPTTKDKIDIYDHLLENDLVAMSEMELYVMNA 270 Query: 290 QSNATERLTNTL--FINISASYSPDSSQIVFESDREGKE----QLYVMQSNGSDQKRISQ 343 + +N + Y PD+ +I+F S+ + LY++ +G+ +R++ Sbjct: 271 DGIDKRSVFKQPRGGLNWTPYYHPDNKRIIFSSNTNSTKPSEFHLYIVNEDGTGLERVTF 330 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGE 369 PV+S G + ++ G Sbjct: 331 GSGYFNAFPVFSHDGKKVVWSSNRGS 356 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 81/209 (38%), Gaps = 30/209 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + ++++ G NI E SP+ + +A+ + D L ++ M+T Sbjct: 550 YPEFDIFMVNKYG-NIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGD-LELWTMNTD-G 606 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA--------------------MDIYSV 287 ++ FS +GKR + + + +IY V Sbjct: 607 TNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVV 666 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRI 341 D+ +++TN + + Y PD+ +I+F S+ G LYV+ +G+ +R+ Sbjct: 667 DVDGKNLKQVTNFGVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTGLERV 726 Query: 342 SQDKEASYFD-PVWSPQGDLIAFTKFSGE 369 + + + P+++ G+ + + Sbjct: 727 TFGEGYQFNAFPMFNRAGNKLVWGSSRNR 755 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 23/148 (15%) Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 V+ D + ++++ G+ K+++ + + + V SP G IAFT + M Sbjct: 544 VYTWDIYPEFDIFMVNKYGNIVKQLTDEPGYNA-EAVLSPDGKTIAFTSIRTGDLELWTM 602 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG------------------DTGSK 417 DG+ + ++ +SP G+ L+F + T ++ Sbjct: 603 NTDGTNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTE 662 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGF 445 +Y +D++G+N + AS W + Sbjct: 663 IYVVDVDGKNLKQVTNFGVAS---WAPY 687 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 97/312 (31%), Gaps = 59/312 (18%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D I ++ + F S L + D +GA ++ F Sbjct: 168 DQITKNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITDINGA-LKIQLTKAKGYDGGASF 226 Query: 220 SPNQQKVAYATYDD--EDILRVYLMDTR------------------IDRAPKRIGNFRSM 259 SP+ +K+ + +D + +Y ID+ + Sbjct: 227 SPDGEKIVFHASRPTTKDKIDIYDHLLENDLVAMSEMELYVMNADGIDKRSVFKQPRGGL 286 Query: 260 ILAPRFSSNGKRALISVQ----KDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSS 314 P + + KR + S K +Y V+ ER+T N +S D Sbjct: 287 NWTPYYHPDNKRIIFSSNTNSTKPSEFHLYIVNEDGTGLERVTFGSGYFNAFPVFSHDGK 346 Query: 315 QIVFESDRE----GKEQLYVMQ--------SNGSDQK------RI----SQDKEASYFDP 352 ++V+ S+R G L++ + SD K RI +Q + D Sbjct: 347 KVVWSSNRGSTKKGDLNLFIADWVDPGRDTDDESDAKEELRTNRIPKKATQKNAMRWQDT 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 V +P + ++GE+ + L +S +I G Sbjct: 407 VTTPYDN---VVHYTGERRL--------KNVKQLTFRGQNAEGYFSYDDSKIILQATGYG 455 Query: 413 DTGSKLYSIDLN 424 T ++Y +DLN Sbjct: 456 TTCDQIYELDLN 467 Score = 44.6 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NE 428 + I + + G+ + ++ + + SP G+ ++++ K+ GD L+ D+NG Sbjct: 155 YDIFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVYTSKQSGD--LDLWITDINGALKI 212 Query: 429 TLINTPAYASDPQWVG 444 L Y + Sbjct: 213 QLTKAKGYDGGASFSP 228 >gi|239997142|ref|ZP_04717666.1| amidohydrolase [Alteromonas macleodii ATCC 27126] Length = 714 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 43/256 (16%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS-----SNGKRALISVQKDEAM 282 YA D E+ L + P + +S NG+ + D Sbjct: 26 YAQNDSEEKTESELETWEVSNPPYALNEVTIKTNETTWSSLDVAPNGEFMVF----DMLG 81 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 D+Y V + LT NI S SPD QI F SD++G ++VM +GS+ ++++ Sbjct: 82 DLYKVSMSGGDATPLTQDFAWNIHPSISPDGKQIAFISDKDGLSNVWVMDIDGSNLRQVT 141 Query: 343 QDKEASYFDPVWSPQGDLIA-----FTKFSGEKFAIGVMKKDGSQERLL-------VEDS 390 ++K P WSP G+ + + S I + K G + + Sbjct: 142 KEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQIKARNSGKRDQQ 201 Query: 391 NLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSID------------LNGRNETL 430 N+ P +S G+ + F+ + D +++I ++G + Sbjct: 202 NIADPVFSHDGKYIYFTENTVPGARFEYNRDPLEGIFAITRYDRETGEESRYISGTGGAV 261 Query: 431 INTPAYASDPQWVGFM 446 + TP + D +++ F+ Sbjct: 262 VPTP--SPDGKYIAFV 275 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 69/414 (16%), Positives = 141/414 (34%), Gaps = 86/414 (20%) Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVL---VTGRVIKEGKDRLRV----EFRLWDVK 134 ++ + Q + + + W VT + + L V EF ++D Sbjct: 21 VAPTLYAQNDSEEKTESELETWEVSNPPYALNEVTIKTNETTWSSLDVAPNGEFMVFD-- 78 Query: 135 DRKQIIGKKFFSSPA--SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 ++G + S + + + +I+ SI+ + +I F+S ++ Sbjct: 79 ----MLGDLYKVSMSGGDATPLTQDFAWNIHPSISPDG----KQIAFIS----DKDGLSN 126 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----YATYDDEDILRVYLMDTRIDR 248 + VMD DG+N+R +T + ++ P++SP+ + + + +++ Sbjct: 127 VWVMDIDGSNLRQVTKEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSGGD 186 Query: 249 APKRIGNFRS-----MILAPRFSSNGKRALIS----------VQKD---EAMDIYSVDLQ 290 + I P FS +GK + +D I D + Sbjct: 187 GLQIKARNSGKRDQQNIADPVFSHDGKYIYFTENTVPGARFEYNRDPLEGIFAITRYDRE 246 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------- 342 + R + + + SPD I F + + L++ + ++ Sbjct: 247 TGEESRYISGTGGAVVPTPSPDGKYIAFVRRVKDRTALFIKDIKTGVETPLTLELERDMQ 306 Query: 343 --QDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVED---------- 389 E + W P I + ++G KF I V K S + VE Sbjct: 307 EGFGSEGYFAYFDWMPDSSEIVY--WTGGKFHTINVKDKTTSTMDVTVEGTVKFADALRF 364 Query: 390 --------SNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLI 431 +++ W SP+G+S++F KLY D+ +G+ + L Sbjct: 365 DVDVAPDEFDVRMIRWSQMSPNGKSVLF------QALGKLYVRDVKSGKIKRLT 412 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 118/320 (36%), Gaps = 52/320 (16%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGII-----KNSLCVMDRDGANIRYLTPSRD 211 +D + + +F+ R++ S+ +G L V D I+ LT D Sbjct: 357 KFADALRFDVDVAPDEFDVRMIRWSQMSPNGKSVLFQALGKLYVRDVKSGKIKRLTKQND 416 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PRFS + + + Y T++D+D+ V ++ R K + + P FS++G++ Sbjct: 417 HDEYYPRFSNDGKSIVYTTWNDQDLGTVRVVSAR-GGKGKVVTQQPGHYIEPSFSADGEK 475 Query: 272 ALISVQKDE---------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 + IY DL+ + E++++ + A ++ ++ ++ F Sbjct: 476 VVFRKFTGGYLLDPKYSVEPGIYVADLEKDTVEKVSDGGYN---AHFAGNNDRVYFTESA 532 Query: 323 EG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 G + QL + G+D KR + S +AF F V Sbjct: 533 GGEAYYETQLSSVNLKGND-KRTHLYGADKVSEYKLSHDKKWVAFVYQ----FKTYVAPF 587 Query: 379 DGSQERLLVEDSNLQAP------------TWSPSGRSL-------IFSRKKDGDTGSKLY 419 + +R+ + + P TWSP ++L +FSR D Sbjct: 588 VENGKRITIGPNMTSLPVTQLSSRAGEYLTWSPDNKTLSWFNGPTLFSRSLDEAFAF--- 644 Query: 420 SIDLNGRNETLINTPAYASD 439 ++G ETL A D Sbjct: 645 ---VDGAAETLPEPVAEGMD 661 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 96/275 (34%), Gaps = 44/275 (16%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS------MILA 262 + + P+ ++ Y T + V T + + +A Sbjct: 310 GSEGYFAYFDWMPDSSEIVYWTGGKFHTINVKDKTTSTMDVTVEGTVKFADALRFDVDVA 369 Query: 263 P--------RFS---SNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYS 310 P R+S NGK L +Y D++S +RLT +S Sbjct: 370 PDEFDVRMIRWSQMSPNGKSVLFQA----LGKLYVRDVKSGKIKRLTKQNDHDEYYPRFS 425 Query: 311 PDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 D IV+ + + + V+ + G K ++Q + Y +P +S G+ + F KF+G Sbjct: 426 NDGKSIVYTTWNDQDLGTVRVVSARGGKGKVVTQ-QPGHYIEPSFSADGEKVVFRKFTGG 484 Query: 370 ---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT--GSKL 418 + I V + + + ++ + + F+ G+ ++L Sbjct: 485 YLLDPKYSVEPGIYVADLEKDTVEKVSDGGYNAH--FAGNNDRVYFTESAGGEAYYETQL 542 Query: 419 YSIDLNGRNETLINTPAY-------ASDPQWVGFM 446 S++L G ++ A + D +WV F+ Sbjct: 543 SSVNLKGNDKRTHLYGADKVSEYKLSHDKKWVAFV 577 >gi|116625010|ref|YP_827166.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228172|gb|ABJ86881.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 896 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 9/229 (3%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ- 277 FS +A+ T ++ D +R + P S +G+ + V+ Sbjct: 591 FSVGGGNLAFRTGQPSPGGQLVWYDRAGNRLGTVGPSADYTN--PALSPDGRLLAVCVRD 648 Query: 278 -KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 DI+ DL + RLT + + ++SPD I+F SDR+G LY ++G+ Sbjct: 649 PATRKRDIWVYDLARGTSSRLTFDPADDFNPTWSPDGQSIIFASDRKGARDLYRKLASGT 708 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSNLQA 394 W+P G + F K + ++ + +L + Sbjct: 709 GPDEPLFQSGEDKSPEHWTPDGKFLLF-NTGSLKHDVWMLPLSDTRTPVAVLNGQFSSHE 767 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 SP+G+ + + + G + + + G + +PQW Sbjct: 768 SQVSPNGKWIAYVSNESGKSEVFVQNFPPAGGKWPISTAGG--MEPQWS 814 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 103/304 (33%), Gaps = 13/304 (4%) Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 + L+D D + + F ++ A I++ + + I F+ ++ Sbjct: 548 YLLFDRNDA--MFAQAFDATRLRLSGEAFPIAEQVSRLIVIAGAHFSVGGGNLAFRTGQP 605 Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 L DR G + + PS D P SP+ + +A D R + Sbjct: 606 SPGGQLVWYDRAGNRLGTVGPSADYTN--PALSPDGRLLAVCVRDPATRKRDIWVYDLAR 663 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R+ + P +S +G+ + + + A D+Y + + S Sbjct: 664 GTSSRLTFDPADDFNPTWSPDGQSIIFASDRKGARDLYRKLASGTGPDEPLFQSGEDKSP 723 Query: 308 -SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++PD ++F + K ++++ + + + + S + SP G IA+ Sbjct: 724 EHWTPDGKFLLFNTG-SLKHDVWMLPLSDTRTPVAVLNGQFSSHESQVSPNGKWIAYVSN 782 Query: 367 SGEKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K + V G + + P WS G L + + ++ D Sbjct: 783 ESGKSEVFVQNFPPAGGKWPISTAGG--MEPQWSRDGSELFYIQDSQ---LMAVFVKDTG 837 Query: 425 GRNE 428 GR E Sbjct: 838 GRFE 841 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 90/274 (32%), Gaps = 22/274 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILF----EPRFSPNQQKVAYATYDDEDILRVYL 241 +G L + G + + L P F P+ Y+ R Sbjct: 462 AGESGTRLWRVSAAGGTPAPMPFANSANLSTTRTWPSFLPDGNHFLYSATSARTEDRGVW 521 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY---SVDLQSNA---TE 295 + + P RI ++S+ G L + + L A E Sbjct: 522 VGSLDSAPPVRI--LPDFETNAQYSAPG-YLLFDRNDAMFAQAFDATRLRLSGEAFPIAE 578 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +++ + I A +S + F R G ++ + + + + A Y +P Sbjct: 579 QVSRLIVI-AGAHFSVGGGNLAF---RTGQPSPGGQLVWYDRAGNRLGTVGPSADYTNPA 634 Query: 354 WSPQGDLIAFTKFSG--EKFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 SP G L+A K I V G+ RL + ++ PTWSP G+S+IF+ + Sbjct: 635 LSPDGRLLAVCVRDPATRKRDIWVYDLARGTSSRLTFDPADDFNPTWSPDGQSIIFASDR 694 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G G +E L + S W Sbjct: 695 KGARDLYRKLASGTGPDEPLFQSGEDKSPEHWTP 728 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 79/267 (29%), Gaps = 36/267 (13%) Query: 203 IRYLTPSRDQILFEPRFSPNQQK--------VAYATYDDEDILRVYLMDTRIDRAPKRIG 254 +R+++ S QI P + +++ + + ++ + + R Sbjct: 297 LRWISQSSSQIALAPAVAATRKRRIGAAAIAASVLAIALAALAAIHFREKAPESRVARFL 356 Query: 255 NFRSMIL----APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 P S +G + + + I L S + L T +S Sbjct: 357 VDPPGTFRWFDTPAVSPDGTQVAFTSATPKGSSILLRTLDSPVLKPLPGTE-EGSFPFWS 415 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD + F + +L + I + + WSP D I F SG + Sbjct: 416 PDGKNLGFIAQ----GKLKKLNLASGIVASI--CEARTSCCGTWSPN-DTILFAGESGTR 468 Query: 371 FAIGVMKKDGSQE--------RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + G L P++ P G ++S ++ Sbjct: 469 --LWRVSAAGGTPAPMPFANSANLSTTRTW--PSFLPDGNHFLYSATSARTEDRGVWVGS 524 Query: 423 LNGRNETLI----NTPAYASDPQWVGF 445 L+ I T A S P ++ F Sbjct: 525 LDSAPPVRILPDFETNAQYSAPGYLLF 551 >gi|262199346|ref|YP_003270555.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haliangium ochraceum DSM 14365] gi|262082693|gb|ACY18662.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haliangium ochraceum DSM 14365] Length = 656 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 10/190 (5%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G R + ++ VD +LT + S ++SPD + + + +DR Sbjct: 74 PALSPDGSRVAFATDTTGKPQLWVVDAAGGWPTQLTFGESV-TSHAWSPDGAWLFYGADR 132 Query: 323 EGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVMKK 378 G E+ Y++ +G ++ + +A +SP G IA+ T+ +G F + V+ Sbjct: 133 GGNEREGFYLISPDGLRERELLAPSDAFRVFGGFSPDGTRIAYSTTERNGLDFDVHVLDL 192 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP--- 434 ++R + S +W P G++L+ S + G+ G+ L+ ++L T + P Sbjct: 193 RSGEDREVYRGSMGFFVSSWRPDGQALLLSEVR-GEDGNDLHLLELASGELTPLYQPEVA 251 Query: 435 AYASDPQWVG 444 A S W Sbjct: 252 AGFSSFAWAP 261 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 14/235 (5%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 +P SP+ +VA+AT + P ++ F + + +S +G Sbjct: 71 AQQPALSPDGSRVAFATDTTGKPQ--LWVVDAAGGWPTQLT-FGESVTSHAWSPDGAWLF 127 Query: 274 ISVQKDEAMD--IYSVDLQS-NATERLTNTLFINISASYSPDSSQIVF-ESDREGKE-QL 328 + Y + E L + + +SPD ++I + ++R G + + Sbjct: 128 YGADRGGNEREGFYLISPDGLRERELLAPSDAFRVFGGFSPDGTRIAYSTTERNGLDFDV 187 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLV 387 +V+ + + + +F W P G + ++ GE + +++ + L Sbjct: 188 HVLDLRSGEDREV-YRGSMGFFVSSWRPDGQALLLSEVRGEDGNDLHLLELASGELTPLY 246 Query: 388 ED---SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + + + W+P + + D L D L+ TP + + Sbjct: 247 QPEVAAGFSSFAWAPDSGGFYMASDLERDF-HALAWHDAATGELALLETPEHDVE 300 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 96/268 (35%), Gaps = 17/268 (6%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SR+ F +++ K L V+D G LT +SP+ + Y Sbjct: 81 SRVAFATDTTG----KPQLWVVDAAGGWPTQLTFGESVTSH--AWSPDGAWLFYGADRGG 134 Query: 235 DILR-VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV--QKDEAMDIYSVDLQS 291 + YL+ R + + + + FS +G R S + D++ +DL+S Sbjct: 135 NEREGFYLISPDGLRERELLAPSDAFRVFGGFSPDGTRIAYSTTERNGLDFDVHVLDLRS 194 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDRE-GKEQLYVMQSNGSDQKRISQDK-EASY 349 + +S+ PD ++ R L++++ + + Q + A + Sbjct: 195 GEDREVYRGSMGFFVSSWRPDGQALLLSEVRGEDGNDLHLLELASGELTPLYQPEVAAGF 254 Query: 350 FDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFS 407 W+P F + + LL + +++ + GR L ++ Sbjct: 255 SSFAWAPDSGGFYMASDLERDFHALAWHDAATGELALLETPEHDVEDVVLTRDGRYLAWT 314 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPA 435 + G S L++ DL + + + PA Sbjct: 315 TNEGG--YSVLHARDL--KEQRALAVPA 338 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 333 SNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 G+ + I+ S P SP G +AF + K + V+ G L + Sbjct: 54 LAGAPRPDITRFLHVRSAQQPALSPDGSRVAFATDTTGKPQLWVVDAAGGWPTQLTFGES 113 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 + + WSP G L + + G+ Y I +G E + P+ A Sbjct: 114 VTSHAWSPDGAWLFYGADRGGNEREGFYLISPDGLRERELLAPSDA 159 Score = 44.2 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL- 430 IG+ + + Q P SP G + F+ G +L+ +D G T Sbjct: 51 DIGLAGAPRPDITRFLHVRSAQQPALSPDGSRVAFATDTTGK--PQLWVVDAAGGWPTQL 108 Query: 431 -----INTPAYASDPQWVGF 445 + + A++ D W+ + Sbjct: 109 TFGESVTSHAWSPDGAWLFY 128 >gi|218921784|emb|CAW30773.1| P100-GA [Haemonchus contortus] Length = 746 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 86/221 (38%), Gaps = 31/221 (14%) Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 T+D ++++ ++ K++ + S +GK + + +++++ Sbjct: 525 TVYTWDIYPEFDIFMV-SKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWT 583 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-------------------- 326 ++ ++T + +SPD ++VF + R + Sbjct: 584 MNTDGTNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLT 643 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDG 380 ++YV+ +G + K+++ AS+ P + P I F+ FA+ V+ +DG Sbjct: 644 EIYVVDVDGKNLKQVTNFGVASW-APYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDG 702 Query: 381 SQERLLVEDSNLQ---APTWSPSGRSLIFSRKKDGDTGSKL 418 + + Q P ++ +G L++ ++ G+ L Sbjct: 703 TGLERVTFGEGYQFNAFPMFNRAGNKLVWGSSRNRTKGASL 743 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 26/185 (14%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 + + DI+ V N ++LT+ N A SPD I F S R G +L+ M Sbjct: 526 VYTWDIYPEFDIFMVSKYGNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMN 585 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------------------A 372 ++G++ +++++ +SP G + F + Sbjct: 586 TDGTNLHQVTKE-YGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTE 644 Query: 373 IGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD---GDTGS-KLYSIDLNGRN 427 I V+ DG + + AP + P + +IFS + GS LY I+ +G Sbjct: 645 IYVVDVDGKNLKQVTNFGVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTG 704 Query: 428 ETLIN 432 + Sbjct: 705 LERVT 709 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 36/227 (15%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 A+ + DI +V +D +I S +GK+ + + ++ +D Sbjct: 122 SGHAWDVFPTYDIFKVNEYGNVLD----QITKNDVYDSEAFISPDGKKIVHTSKQSGDLD 177 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGKEQL-------------- 328 ++ D+ +LT + AS+SPD +IVF + R GK+++ Sbjct: 178 LWITDINGALKIQLTKAKGYDGGASFSPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVAT 237 Query: 329 -----YVMQSNG--SDQ--KRISQDKEAS--YFDPVWSPQGDLIAFTKFSG----EKFAI 373 VM++N + +RI ++E + P + P I F+ ++ + Sbjct: 238 KKMELSVMKANTVCGNVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHL 297 Query: 374 GVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 ++ +DG+ ER+ A P +S G+ +++S + L Sbjct: 298 YIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNRGSTKEGDL 344 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 74/196 (37%), Gaps = 29/196 (14%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 NI E SP+ + +A+ + D L ++ M+T ++ Sbjct: 544 GNIVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGD-LELWTMNTD-GTNLHQVTKEYGYD 601 Query: 261 LAPRFSSNGKRALISVQKDEA--------------------MDIYSVDLQSNATERLTNT 300 FS +GKR + + + +IY VD+ +++TN Sbjct: 602 GGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVVDVDGKNLKQVTNF 661 Query: 301 LFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQDKEASYFD-PV 353 + + Y PD+ +I+F S+ G LYV+ +G+ +R++ + + P+ Sbjct: 662 GVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTGLERVTFGEGYQFNAFPM 721 Query: 354 WSPQGDLIAFTKFSGE 369 ++ G+ + + Sbjct: 722 FNRAGNKLVWGSSRNR 737 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 36/211 (17%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + ++ G N+ D E SP+ +K+ + + D + L T I+ A Sbjct: 132 YDIFKVNEYG-NVLDQITKNDVYDSEAFISPDGKKIVHTSKQSGD---LDLWITDINGAL 187 Query: 251 K-RIGNFRSMILAPRFSSNGKRALISVQKDEAMD--------------------IYSVDL 289 K ++ + FS +G++ + + D + + Sbjct: 188 KIQLTKAKGYDGGASFSPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVATKKMELSVMKA 247 Query: 290 QS-----NATERLTNTL--FINISASYSPDSSQIVFESDREGK----EQLYVMQSNGSDQ 338 + L N ++ + Y PD+ +I+F S+ LY++ +G+ Sbjct: 248 NTVCGNVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHLYIVNEDGTGL 307 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R++ PV+S G + ++ G Sbjct: 308 ERVTFGSGYFNAFPVFSHDGKKVVWSSNRGS 338 Score = 83.5 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 23/148 (15%) Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 V+ D + ++++ G+ K+++ + + + V SP G IAFT + M Sbjct: 526 VYTWDIYPEFDIFMVSKYGNIVKQLTDEPGYNA-EAVLSPDGKTIAFTSIRTGDLELWTM 584 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG------------------DTGSK 417 DG+ + ++ +SP G+ L+F + T ++ Sbjct: 585 NTDGTNLHQVTKEYGYDGGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTE 644 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVGF 445 +Y +D++G+N + AS W + Sbjct: 645 IYVVDVDGKNLKQVTNFGVAS---WAPY 669 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 98/317 (30%), Gaps = 64/317 (20%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D I ++ + F S L + D +GA ++ F Sbjct: 145 DQITKNDVYDSEAFISPDGKKIVHTSKQSGDLDLWITDINGA-LKIQLTKAKGYDGGASF 203 Query: 220 SPNQQKVAYATYDDEDILRVYLMD--------------TRIDRAPKRIGNFRS------- 258 SP+ +K+ + ++ + D + +A GN Sbjct: 204 SPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVATKKMELSVMKANTVCGNVTGERILFNR 263 Query: 259 ----MILAPRFSSNGKRALISVQ----KDEAMDIYSVDLQSNATERLTNTLFI-NISASY 309 + P + + KR + S K +Y V+ ER+T N + Sbjct: 264 ERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHLYIVNEDGTGLERVTFGSGYFNAFPVF 323 Query: 310 SPDSSQIVFESDRE----GKEQLYVMQ--------SNGSDQK------RI----SQDKEA 347 S D ++V+ S+R G L++ + SD K RI +Q Sbjct: 324 SHDGKKVVWSSNRGSTKEGDLNLFIADWVDPGRDTDDESDAKEELRTNRIPKKATQKNAM 383 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + D V +P + ++GE+ + L +S +I Sbjct: 384 RWQDTVTTPYDN---VVHYTGERRL--------KNVKQLTFRGQNAEGYFSYDDSKIILQ 432 Query: 408 RKKDGDTGSKLYSIDLN 424 G T ++Y +DLN Sbjct: 433 ATGYGTTCDQIYELDLN 449 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 37/195 (18%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKN----SLCVMDRDGANIRYLTP--SRDQILF 215 I + +T E G +L ++ L M+ DG N+ +T D F Sbjct: 546 IVKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMNTDGTNLHQVTKEYGYDGGCF 605 Query: 216 EPRFSPNQQKVAYATYDDE-------------------DILRVYLMDTRIDRAPKRIGNF 256 FSP+ +++ + + + +Y++D + K++ NF Sbjct: 606 ---FSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVVDVD-GKNLKQVTNF 661 Query: 257 RSMILAPRFSSNGKRALISVQKD------EAMDIYSVDLQSNATERLTNTLFI--NISAS 308 AP + + KR + S + + +Y ++ ER+T N Sbjct: 662 GVASWAPYYLPDNKRIIFSSNYNMSAKQFGSFALYVINEDGTGLERVTFGEGYQFNAFPM 721 Query: 309 YSPDSSQIVFESDRE 323 ++ +++V+ S R Sbjct: 722 FNRAGNKLVWGSSRN 736 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 25/207 (12%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAM--DIYSVDLQSNATE--RLTNTLFINISA 307 R F + F+S+ + IY ++L +++ + + ++ Sbjct: 10 RQLTFENRNTEAYFNSDDTYLVFQATGYGVDCEQIYRLELSRPVETLAKISTGIGTSAAS 69 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + P+S I++ G + + K+++ D S + K Sbjct: 70 FFYPNSVDILY----SGNFHKTRVNA-----KKLTNDNRCPQKVCDSSKAKTDLIIKKMC 120 Query: 368 GEK--------FAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKL 418 + I + + G+ + ++ + + SP G+ ++ + K+ GD L Sbjct: 121 ESGHAWDVFPTYDIFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVHTSKQSGD--LDL 178 Query: 419 YSIDLNGR-NETLINTPAYASDPQWVG 444 + D+NG L Y + Sbjct: 179 WITDINGALKIQLTKAKGYDGGASFSP 205 >gi|311745523|ref|ZP_07719308.1| tol biopolymer transport system, periplasmic protein [Algoriphagus sp. PR1] gi|126578081|gb|EAZ82301.1| tol biopolymer transport system, periplasmic protein [Algoriphagus sp. PR1] Length = 305 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 19/234 (8%) Query: 193 LCVMDRDGANIRYLTPSR-DQILFEPRFSPNQQKVAYATY--DDEDILRVYLMDTRIDRA 249 L + G N+ +L + + +S + + + ++ D E Sbjct: 69 LEKISPTGENLGFLNTGPIQRANNDHGYSFDGKTLFISSGKPDVERGGSYIYKVAAEGGN 128 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 P I S +GK + ++ DIY + + RLT+ ++ Y Sbjct: 129 PTLITPLSPSYWH-GVSPDGKDIVYCAPRNGNYDIYKMSVNGGEEIRLTSEESLDDGPEY 187 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL---IAF--- 363 SPD I S R G Q++ ++ +GSD ++++ D +++F SP + I + Sbjct: 188 SPDGKYIYINSYRTGMMQIWRIKPDGSDPEQMTFDNHSNWFA-HISPNNKVATIITYLED 246 Query: 364 ---TKFSGEKFAIGVMKKDGSQERLLVE-----DSNLQAPTWSPSGRSLIFSRK 409 G + + ++ + + L E + P+W+P G + R Sbjct: 247 QKEGHPFGRQVKLRLLDLETKEVTDLTEEFYGGQGTINVPSWNPEGTKFAYVRY 300 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 20/206 (9%) Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I +Y+ D + + I AP +S +G LI + + + Sbjct: 26 ISSLYIYDMATGK-SEMILKEDRHFEAPNWSPDGTFLLI----NSEGKLEKISPTGENLG 80 Query: 296 RLTNTL---FINISASYSPDSSQIVFESD-----REGKEQLYVMQSNGSDQKRISQDKEA 347 L N YS D + F S G +Y + + G + I+ + Sbjct: 81 FLNTGPIQRANNDHG-YSFDGKTL-FISSGKPDVERGGSYIYKVAAEGGNPTLITPLSPS 138 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIF 406 + SP G I + + I M +G +E RL E+S P +SP G+ + Sbjct: 139 YWHG--VSPDGKDIVYCAPRNGNYDIYKMSVNGGEEIRLTSEESLDDGPEYSPDGKYIYI 196 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLIN 432 + + G +++ I +G + + Sbjct: 197 NSYRTGMM--QIWRIKPDGSDPEQMT 220 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 17/207 (8%) Query: 173 FNSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F+ + LF+S + + + +G N +TP + SP+ + + Y Sbjct: 98 FDGKTLFISSGKPDVERGGSYIYKVAAEGGNPTLITPLSPS--YWHGVSPDGKDIVYCAP 155 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + + +Y M R+ + S+ P +S +GK I+ + M I+ + Sbjct: 156 RNGN-YDIYKMSVNGGEEI-RLTSEESLDDGPEYSPDGKYIYINSYRTGMMQIWRIKPDG 213 Query: 292 NATERLTNTLFINISASYSPDSSQI----VFESDREGKE-----QLYVMQSNGSDQKRIS 342 + E++T N A SP++ E +EG +L ++ + ++ Sbjct: 214 SDPEQMTFDNHSNWFAHISPNNKVATIITYLEDQKEGHPFGRQVKLRLLDLETKEVTDLT 273 Query: 343 ---QDKEASYFDPVWSPQGDLIAFTKF 366 + + P W+P+G A+ ++ Sbjct: 274 EEFYGGQGTINVPSWNPEGTKFAYVRY 300 >gi|193216325|ref|YP_001997524.1| WD40 domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089802|gb|ACF15077.1| WD40 domain protein beta Propeller [Chloroherpeton thalassium ATCC 35110] Length = 1114 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 29/281 (10%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEPRFSP 221 + IT G F+ +++ ++ + + D D ++ LTP+ +SP Sbjct: 318 FAFITDRNGYFD---IYIGSTIKKDEFEKIVSGQDALDFEELKILTPAI-------TWSP 367 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + +K+A AT + L+D K N + + +S +GK K Sbjct: 368 DGKKIAIAT-KAGSSDAIMLIDVESHDTKKITFNLDGI-FSVDWSPDGKMLCFIGNKTYK 425 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 D+Y DL+S + LTN +F + S+SPD +I F SDR + + + + Sbjct: 426 SDVYIYDLESKTLQNLTNDVFSDSDPSWSPDGQKIFFVSDRTNHLNVKPIAVETDTSRAV 485 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSP 399 +E ++ T + + + + S R L S + +P SP Sbjct: 486 RFTREETFD------------MTNYDYFQKDVYELSLGKSSLRRLTATSAIDESSPIVSP 533 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G++L+F +G +Y +DL P +P Sbjct: 534 DGKTLLFVSDLNG--IYNVYKLDLTDPGLKNTPLPEPKLEP 572 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 29/232 (12%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 ++ + + + + + L + + + +P S G + Sbjct: 269 KWVHDLKVMYWPEIAQREELESDFVKLTDHKE-----DGSGYNTSPSISPQGDKFAFITD 323 Query: 278 KDEAMDIYSVD----------------LQSNATERLTNTLFINISASYSPDSSQIVFESD 321 ++ DIY L + LT I ++SPD +I + Sbjct: 324 RNGYFDIYIGSTIKKDEFEKIVSGQDALDFEELKILT--PAI----TWSPDGKKIAIATK 377 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + + ++ D K+I+ + + F WSP G ++ F K + + + Sbjct: 378 AGSSDAIMLIDVESHDTKKITFNLDG-IFSVDWSPDGKMLCFIGNKTYKSDVYIYDLESK 436 Query: 382 QERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + L D + P+WSP G+ + F + K +++ + Sbjct: 437 TLQNLTNDVFSDSDPSWSPDGQKIFFVSDRTNHLNVKPIAVETDTSRAVRFT 488 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 17/164 (10%) Query: 296 RLTNT----LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEASYF 350 +LT+ N S S SP + F +DR G +Y+ + D+ ++I ++A F Sbjct: 294 KLTDHKEDGSGYNTSPSISPQGDKFAFITDRNGYFDIYIGSTIKKDEFEKIVSGQDALDF 353 Query: 351 --------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSG 401 WSP G IA +G AI ++ + + + + + WSP G Sbjct: 354 EELKILTPAITWSPDGKKIAIATKAGSSDAIMLIDVESHDTKKITFNLDGIFSVDWSPDG 413 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQWVG 444 + L F K S +Y DL + + ++ SDP W Sbjct: 414 KMLCFIGNK--TYKSDVYIYDLESKTLQNLTNDVFSDSDPSWSP 455 >gi|124008206|ref|ZP_01692903.1| peptidase, S41 family [Microscilla marina ATCC 23134] gi|123986305|gb|EAY26127.1| peptidase, S41 family [Microscilla marina ATCC 23134] Length = 1066 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 22/196 (11%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + S Q D I+ + RLT + + +S D I F S+R Sbjct: 30 PAISPDGNQVAFSFQGD----IWVMAANGGVARRLTIHQGYDANPIWSSDGKHIAFSSNR 85 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI------AFTKFSGEKFAIGVM 376 ++ + +NG KR++ W+ Q +++ A+ + + E+ I + Sbjct: 86 ASNYDVFTIPANGGATKRLTYHSSGDQATC-WTAQNEVLFTSRVRAYRQIAYER-EIHKV 143 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK--------KDGDTGSKLYSIDLNGRN- 427 +G + ++ D+ PT SP+G+ + F R G ++ + + Sbjct: 144 SAEGGTPQRML-DAQGYMPTQSPNGKLIAFVRGTCGVVREAYQGPANRNIWIYNNETKQY 202 Query: 428 ETLINTPAYASDPQWV 443 L N P+ P W Sbjct: 203 TQLTNDPSNEFQPIWS 218 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 31/240 (12%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +P SP+ +VA++ D +++M +R+ + P +SS+GK Sbjct: 26 FATQPAISPDGNQVAFSFQGD-----IWVMAAN-GGVARRLTIHQGYDANPIWSSDGKHI 79 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----- 327 S + D++++ AT+RLT + + ++ ++++F S Q Sbjct: 80 AFSSNRASNYDVFTIPANGGATKRLTYHSSGDQATCWTA-QNEVLFTSRVRAYRQIAYER 138 Query: 328 -LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----------FSGEKFAIGVM 376 ++ + + G +R+ +A + P SP G LIAF + I + Sbjct: 139 EIHKVSAEGGTPQRML---DAQGYMPTQSPNGKLIAFVRGTCGVVREAYQGPANRNIWIY 195 Query: 377 KKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---NETLIN 432 + Q L D + + P WS +L + K G ++ +G N I Sbjct: 196 NNETKQYTQLTNDPSNEFQPIWS-DDNALYYISAKSGKYNIYQQKLNTDGTANGNARQIT 254 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 94/292 (32%), Gaps = 41/292 (14%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + + + V+ + + VM +G R LT P +S + + Sbjct: 19 QAQTQPIFATQPAISPDGNQVAFSFQGDIWVMAANGGVARRLTI-HQGYDANPIWSSDGK 77 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD- 283 +A+++ + A KR+ S A +++ L + + Sbjct: 78 HIAFSSNRASN--YDVFTIPANGGATKRLTYHSSGDQATCWTAQ-NEVLFTSRVRAYRQI 134 Query: 284 -----IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG----------KEQL 328 I+ V + +R+ + + SP+ I F G + Sbjct: 135 AYEREIHKVSAEGGTPQRMLDAQGY--MPTQSPNGKLIAFVRGTCGVVREAYQGPANRNI 192 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-----SQE 383 ++ + +++ D ++ F P+WS + + + K+ I K + Sbjct: 193 WIYNNETKQYTQLTND-PSNEFQPIWSDD-NALYYISAKSGKYNIYQQKLNTDGTANGNA 250 Query: 384 RLLVEDSNLQAPTWSPSG-RSLIFSRKKD--GDTGSKLYSIDLN-GRNETLI 431 R + ++ G R SR + LY+++ N G+ + L Sbjct: 251 RQIT--------RYTDDGIRYFGVSRNNQLVFERQISLYTMNANEGKAKKLT 294 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 103/299 (34%), Gaps = 31/299 (10%) Query: 146 SSPASWRKIAHTISDDIYQSITGEKG--DFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 ++ + R+I D I F +I + + G K D Sbjct: 245 TANGNARQITRYTDDGIRYFGVSRNNQLVFERQISLYTMNANEGKAKKLTIQATNDYRFD 304 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + + + + + +PN + Y + + + + + R + + +P Sbjct: 305 QVTHQTYRNGVADYKVAPNGK---YVAVEIRGEIFIKPIA-KDKRKAMNLSDHAFRDESP 360 Query: 264 RFSSNGKRALISVQKDEAMDIYSV------------DLQSNATERLTNTLFINISASYSP 311 + ++ + ++ D+Y V L++ +LT T + + SP Sbjct: 361 EWLND-STLVFISDRNGQRDLYLVRSIDKKQSNLYKTLKTKVI-QLTQTKAEEFAPTLSP 418 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQ---KRISQDKEASYFDPVWSPQGDLIAFTKFS- 367 + +I + R G+ +L V + + + +++ A+ WSP ++++ + Sbjct: 419 NGKKIAY---RRGRGELVVASISATGKLSNEKVLVKGWATPGGVAWSPDSRWLSYSLTNL 475 Query: 368 GEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + + SQ + + WSP G L F + D ++ + LN Sbjct: 476 NFNREVYIQAANNSQPGVNVSMHPRGDYGAVWSPDGSKLAFMSNRIND--YDVWFVWLN 532 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 54/380 (14%), Positives = 107/380 (28%), Gaps = 106/380 (27%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R H+ D + F SR+ + + + + +G + + D Sbjct: 103 RLTYHSSGDQATCWTAQNEVLFTSRVRAYRQI----AYEREIHKVSAEGGTPQRML---D 155 Query: 212 QILFEPRFSPNQQKVAYAT---------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + P SPN + +A+ Y +++ + + + + N S Sbjct: 156 AQGYMPTQSPNGKLIAFVRGTCGVVREAYQGPANRNIWIYNNETKQYTQ-LTNDPSNEFQ 214 Query: 263 PRFSSNGKRALISVQKDEAMDIYS--VDLQS---NATERLTNTLFINISASYSPDSSQIV 317 P +S + K +IY ++ ++T I ++Q+V Sbjct: 215 PIWSDD-NALYYISAKSGKYNIYQQKLNTDGTANGNARQITRYTDDGIRYFGVSRNNQLV 273 Query: 318 FESDREGKEQLYVMQSNGSDQKRIS--------------QDKEASYFDPVWSPQGDLIA- 362 FE LY M +N K+++ Q D +P G +A Sbjct: 274 FERQIS----LYTMNANEGKAKKLTIQATNDYRFDQVTHQTYRNGVADYKVAPNGKYVAV 329 Query: 363 ----------------------------------------FTKFSGEKFAIGVMK----- 377 F + + +++ Sbjct: 330 EIRGEIFIKPIAKDKRKAMNLSDHAFRDESPEWLNDSTLVFISDRNGQRDLYLVRSIDKK 389 Query: 378 -------KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR--NE 428 +L + APT SP+G+ + + + G + SI G+ NE Sbjct: 390 QSNLYKTLKTKVIQLTQTKAEEFAPTLSPNGKKIAY---RRGRGELVVASISATGKLSNE 446 Query: 429 TLI----NTPAYASDPQWVG 444 ++ TP W Sbjct: 447 KVLVKGWATPGGV---AWSP 463 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 56/190 (29%), Gaps = 45/190 (23%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ + ++Y+ + VY+ + + +S +G + Sbjct: 460 AWSPDSRWLSYSLTNLNFNREVYIQAANNSQPGVNVSMHPRGDYGAVWSPDGSKLAFMSN 519 Query: 278 KDEAMDIYSVDL-------------QSN---------------------------ATERL 297 + D++ V L + R+ Sbjct: 520 RINDYDVWFVWLNRADWEKSKSDHEEGGYYDDPDKKKSKPKKNALVNIDFENIHHRVARV 579 Query: 298 TNTLFINISASYSPDSSQIVFESD----REGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 T+ + F + R + LY ++ +GS K +++ + + + Sbjct: 580 TSLPGNEGGLAIGNKGQTFYFTATNPTARHHRYDLYQVKWDGSQTKMLTKRGK-NPRRLL 638 Query: 354 WSPQGDLIAF 363 SP+G + F Sbjct: 639 LSPKGKKLHF 648 Score = 39.2 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%) Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWV 443 + P SP G + FS ++ + NG + Y ++P W Sbjct: 22 TQPIFATQPAISPDGNQVAFS------FQGDIWVMAANGGVARRLTIHQGYDANPIWS 73 >gi|309356046|emb|CAP37634.2| CBR-TAG-10 protein [Caenorhabditis briggsae AF16] Length = 451 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 93/223 (41%), Gaps = 31/223 (13%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T+D D ++ +D R +R+ N S +G + + + +++Y ++ Sbjct: 181 YTWDIFDDYDIFKVD-RYGNFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMN 239 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--------------------QL 328 + R+TNTL + + ++PD +++F + R + +L Sbjct: 240 TDGSNLTRVTNTLGYDGGSFFTPDGKRLIFRASRPKTDEEIAKYKKLLSYNLVEPIAMEL 299 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQ 382 +++ +G + K+I++ EA++ + + I F+ F++ ++ DG+ Sbjct: 300 FIVDIDGKNMKQITKLGEANWAPYMLN-DNKRIVFSSNYDAAANGFGAFSLYMVNVDGTG 358 Query: 383 -ERLLVEDSNLQAPTW-SPSGRSLIFSRKKDG-DTGSKLYSID 422 ER+ ++ + S G+ L++ ++G L+ D Sbjct: 359 LERITYGENQFNSFAMQSYDGKKLVWGSSRNGTQYELNLFIAD 401 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 26/184 (14%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + DI+ VD N +RLTN+ + SPD ++I F S R G +LYVM + Sbjct: 181 YTWDIFDDYDIFKVDRYGNFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNT 240 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--------------------FAI 373 +GS+ R++ + ++P G + F + + Sbjct: 241 DGSNLTRVT-NTLGYDGGSFFTPDGKRLIFRASRPKTDEEIAKYKKLLSYNLVEPIAMEL 299 Query: 374 GVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGRNE 428 ++ DG + + + AP + ++FS D G LY ++++G Sbjct: 300 FIVDIDGKNMKQITKLGEANWAPYMLNDNKRIVFSSNYDAAANGFGAFSLYMVNVDGTGL 359 Query: 429 TLIN 432 I Sbjct: 360 ERIT 363 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 83/217 (38%), Gaps = 30/217 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +DR G N + E SP+ K+A+ + D L +Y+M+T Sbjct: 188 DYDIFKVDRYG-NFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGD-LELYVMNTD-GSN 244 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--------------------DIYSVDL 289 R+ N F+ +GKR + + + +++ VD+ Sbjct: 245 LTRVTNTLGYDGGSFFTPDGKRLIFRASRPKTDEEIAKYKKLLSYNLVEPIAMELFIVDI 304 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ 343 +++T N + D+ +IVF S+ + G LY++ +G+ +RI+ Sbjct: 305 DGKNMKQITKLGEANWAPYMLNDNKRIVFSSNYDAAANGFGAFSLYMVNVDGTGLERITY 364 Query: 344 DKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + + S G + + + +G ++ + + D Sbjct: 365 GENQFNSFAMQSYDGKKLVWGSSRNGTQYELNLFIAD 401 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 94/293 (32%), Gaps = 63/293 (21%) Query: 195 VMDRDG----ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRID-- 247 V+ DG AN++ LT FS + K+ D ++Y +D D Sbjct: 54 VVHFDGETHLANVKQLTFGGMNAEGY--FSFDNSKLTLQATGYGTDCDQIYELDLNTDPK 111 Query: 248 -RAPKRIGNFRSMILAPRF--SSNGKRALISVQKDEAMDIYSVDLQ------------SN 292 + KRI F ++ L + + D+ ++ Sbjct: 112 LQTLKRISTGLGGTTCSYFYKEADNNHRLYAGNWWNVKIDNTTDVSKTCPEKKCANPKTD 171 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ++L NT + D ++ + G+ +R++ + + Sbjct: 172 ELKQLCNTS----------------YTWDIFDDYDIFKVDRYGNFVQRLT-NSPGYDAEG 214 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 V SP G IAFT + VM DGS + ++P G+ LIF + Sbjct: 215 VVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTRVTNTLGYDGGSFFTPDGKRLIFRASRP 274 Query: 412 G------------------DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +L+ +D++G+N I A+ W +M Sbjct: 275 KTDEEIAKYKKLLSYNLVEPIAMELFIVDIDGKNMKQITKLGEAN---WAPYM 324 >gi|197105967|ref|YP_002131344.1| peptidase S9, prolyl oligopeptidase active site region [Phenylobacterium zucineum HLK1] gi|196479387|gb|ACG78915.1| peptidase S9, prolyl oligopeptidase active site region [Phenylobacterium zucineum HLK1] Length = 682 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 105/301 (34%), Gaps = 62/301 (20%) Query: 186 SGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + + S+ + D GA + D F PR+SP+ ++AY + + ++Y+ Sbjct: 68 TDRSQRSIWLADLSTGAQAPLVVD--DGNNFAPRWSPDGTRLAYVSAQPGERPQLYVRWV 125 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISV---------------------------- 276 R+ K ++ +S +G+ ++ Sbjct: 126 ASGRSAKVATLEQAPNDI-AWSPDGRTLAFTMIELDEGKPLGAPLKKPDGAKWAEPLKVI 184 Query: 277 ------------QKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDRE 323 K ++ V ++T F + +++ D ++F S+R Sbjct: 185 DRVTYRFDGQGYMKPGFRQVFVVSADGGQPRQVTFGKFDSEGPIAFTADGRGVLFASNRN 244 Query: 324 GK-------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----KFSGEKF 371 ++Y + R++ + PV SP G IAF S E Sbjct: 245 PTWEREPQESEVYRVDIVDGRLTRLTS-RVGPDAAPVPSPDGRRIAFVGNDDKGRSHEDS 303 Query: 372 AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + VM DG R L D ++ P WS RSL F G +K+ + L+GR ET Sbjct: 304 KLYVMDADGGNVRQLAANLDRSVGVPQWSEDSRSLYFDYVDKG--VTKVARVSLDGRLET 361 Query: 430 L 430 + Sbjct: 362 V 362 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 92/289 (31%), Gaps = 60/289 (20%) Query: 214 LFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 +P+ P+ VAY D ++L D + + APR+S + Sbjct: 45 ASDPQVRPDGGAVAYVRARNDIMTDRSQRSIWLADLSTGAQAPLVVD-DGNNFAPRWSPD 103 Query: 269 GKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------- 320 G R S Q E +Y + S + ++ ++SPD + F Sbjct: 104 GTRLAYVSAQPGERPQLYVRWVASGRSAKVATLEQAPNDIAWSPDGRTLAFTMIELDEGK 163 Query: 321 ---------------------DR------------EGKEQLYVMQSNGSDQKRISQDKEA 347 DR G Q++V+ ++G ++++ K Sbjct: 164 PLGAPLKKPDGAKWAEPLKVIDRVTYRFDGQGYMKPGFRQVFVVSADGGQPRQVTFGKFD 223 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMK-KDGSQERLLVEDSNLQAPTWSP 399 S ++ G + F + + + DG RL AP SP Sbjct: 224 SEGPIAFTADGRGVLFASNRNPTWEREPQESEVYRVDIVDGRLTRLTSRVGPDAAPVPSP 283 Query: 400 SGRSLIFSRKKDGDTG---SKLYSIDLNGRNETLI--NTPAYASDPQWV 443 GR + F D SKLY +D +G N + N PQW Sbjct: 284 DGRRIAFVGNDDKGRSHEDSKLYVMDADGGNVRQLAANLDRSVGVPQWS 332 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 58/272 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD-- 232 +R+ +VS V A + L + + I +SP+ + +A+ + Sbjct: 105 TRLAYVSAQPGERPQLYVRWVASGRSAKVATLEQAPNDI----AWSPDGRTLAFTMIELD 160 Query: 233 ------------------------------------DEDILRVYLMDTRIDRAPKRIGNF 256 + R + + P+++ Sbjct: 161 EGKPLGAPLKKPDGAKWAEPLKVIDRVTYRFDGQGYMKPGFRQVFVVSADGGQPRQVTFG 220 Query: 257 RSMILAP-RFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISAS 308 + P F+++G+ L + ++ + +Y VD+ RLT+ + + + Sbjct: 221 KFDSEGPIAFTADGRGVLFASNRNPTWEREPQESEVYRVDIVDGRLTRLTSRVGPDAAPV 280 Query: 309 YSPDSSQIVFE-SDREGKEQ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD +I F +D +G+ LYVM ++G + ++++ + + S P WS + F Sbjct: 281 PSPDGRRIAFVGNDDKGRSHEDSKLYVMDADGGNVRQLAANLDRSVGVPQWSEDSRSLYF 340 Query: 364 TKFSGEKFAIGVMKKDGSQERL---LVEDSNL 392 + + DG E + L Sbjct: 341 DYVDKGVTKVARVSLDGRLETVAEGLTGGGLD 372 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 9/103 (8%) Query: 350 FDPVWSPQGDLIAFTKFSGE------KFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGR 402 DP P G +A+ + + + +I + G+Q L+V+D N AP WSP G Sbjct: 46 SDPQVRPDGGAVAYVRARNDIMTDRSQRSIWLADLSTGAQAPLVVDDGNNFAPRWSPDGT 105 Query: 403 SLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 L + + G+ +LY + +GR+ + +D W Sbjct: 106 RLAYVSAQPGER-PQLYVRWVASGRSAKVATLEQAPNDIAWSP 147 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 7/129 (5%) Query: 176 RILFV-SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 RI FV ++ + L VMD DG N+R L + D+ + P++S + + + Y Y D+ Sbjct: 287 RIAFVGNDDKGRSHEDSKLYVMDADGGNVRQLAANLDRSVGVPQWSEDSRSL-YFDYVDK 345 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAP----RFSSNGKRALISVQKDEAMDIYSVDLQ 290 + +V + G + P FS + A V + Sbjct: 346 GVTKVARVSLDGRLETVAEGLTGGGLDRPYAGGEFSVARGVIAYTAGSTVAPADLVV-RR 404 Query: 291 SNATERLTN 299 RLT Sbjct: 405 GGKASRLTR 413 >gi|83815698|ref|YP_446500.1| acylaminoacyl-peptidase [Salinibacter ruber DSM 13855] gi|83757092|gb|ABC45205.1| acylaminoacyl-peptidase [Salinibacter ruber DSM 13855] Length = 703 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 58/278 (20%) Query: 212 QILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + + P+ SP+ ++ Y +D ++ +D K + + + +PR+S Sbjct: 61 EWVTNPQVSPDGSQIVYQRRGMDVMEDRRTSALWRLDADGTDHTK-LTSRTADESSPRWS 119 Query: 267 SNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------ 319 +G + + +E +IY ++ N T R+T S+SPD + + F Sbjct: 120 PDGSKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAPSGLSWSPDGTHLAFSMHVSAP 179 Query: 320 -----------------------------SDREG-----KEQLYVMQSNGSDQKRISQDK 345 SD G + L+V++++G ++++ Sbjct: 180 EPTLASRPEPPEGADWAEPPRVETRLNHESDGTGVLDYGHDHLFVVRADGGRARQVTAGD 239 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVEDSNLQA-PTW 397 PVW+P G+ + ++ + + + + DG + L + P Sbjct: 240 YNHSSRPVWTPDGEALLYSANRHDNWERERRNSELYRVPVDGGESTPLTDRFGPDHTPRV 299 Query: 398 SPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLIN 432 SP G ++ + D + LY +D +G N +++ Sbjct: 300 SPDGETIAYLGYDDEVQTYQVTRLYVMDRDGSNRRVVD 337 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 62/249 (24%) Query: 259 MILAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+ S +G + + ++ ++ +D +LT+ S +SPD Sbjct: 62 WVTNPQVSPDGSQIVYQRRGMDVMEDRRTSALWRLDADGTDHTKLTSRTADESSPRWSPD 121 Query: 313 SSQIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 S+I F SD E ++YV + RI+Q + A WSP G +AF+ Sbjct: 122 GSKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAP-SGLSWSPDGTHLAFSMHVSAPE 180 Query: 367 -----------------------------------SGEKFAIGVMKKDGSQERLLVEDSN 391 + V++ DG + R + Sbjct: 181 PTLASRPEPPEGADWAEPPRVETRLNHESDGTGVLDYGHDHLFVVRADGGRARQVTAGDY 240 Query: 392 LQA--PTWSPSGRSLIFSRKKDG-----DTGSKLYSIDLNGRNETLIN-------TPAYA 437 + P W+P G +L++S + S+LY + ++G T + TP + Sbjct: 241 NHSSRPVWTPDGEALLYSANRHDNWERERRNSELYRVPVDGGESTPLTDRFGPDHTPRVS 300 Query: 438 SDPQWVGFM 446 D + + ++ Sbjct: 301 PDGETIAYL 309 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 81/268 (30%), Gaps = 55/268 (20%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I F S G V A I L + + +SP+ +A++ + Sbjct: 123 SKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAPSGL----SWSPDGTHLAFSMHVSA 178 Query: 235 DIL---------------------------------------RVYLMDTRIDRAPKRIGN 255 ++++ RA + Sbjct: 179 PEPTLASRPEPPEGADWAEPPRVETRLNHESDGTGVLDYGHDHLFVVRADGGRARQVTAG 238 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISAS 308 + P ++ +G+ L S + + + +Y V + + LT+ + + Sbjct: 239 DYNHSSRPVWTPDGEALLYSANRHDNWERERRNSELYRVPVDGGESTPLTDRFGPDHTPR 298 Query: 309 YSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD I + + + +LYVM +GS+++ + S D W G+ + Sbjct: 299 VSPDGETIAYLGYDDEVQTYQVTRLYVMDRDGSNRRVVDLGLNRSIDDIAWDEDGEGLYV 358 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +G DGS + Sbjct: 359 QYEDEGTTKLGHTTLDGSTSVVATNLGG 386 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 13/182 (7%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDEDIL 237 + V + L V+ DG R +T P ++P+ + + Y+ ++ E Sbjct: 212 TGVLDYGHDHLFVVRADGGRARQVTAGDYNHSSRPVWTPDGEALLYSANRHDNWERERRN 271 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSN 292 + + PR S +G+ VQ + +Y +D + Sbjct: 272 SELYRVPVDGGESTPLTDRFGPDHTPRVSPDGETIAYLGYDDEVQTYQVTRLYVMDRDGS 331 Query: 293 ATER--LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 L I+ A + D + + + EG +L +GS + S Sbjct: 332 NRRVVDLGLNRSIDDIA-WDEDGEGLYVQYEDEGTTKLGHTTLDGSTSVVATNLGGTSIG 390 Query: 351 DP 352 P Sbjct: 391 RP 392 >gi|254294964|ref|YP_003060987.1| hypothetical protein Hbal_2615 [Hirschia baltica ATCC 49814] gi|254043495|gb|ACT60290.1| WD40 domain protein beta Propeller [Hirschia baltica ATCC 49814] Length = 648 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 110/327 (33%), Gaps = 52/327 (15%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY-------LTPSRDQILFEPRF--- 219 KG N I + S + +DG+ + Y D ++P + Sbjct: 322 KGPENEGIYYTDGSTPILKKNVREPIWTQDGSQVIYEQVDHTRRPDGVDLYSWDPEWEYK 381 Query: 220 ---------SPNQ---------QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 S ++ + D ++ +Y + + P +G Sbjct: 382 HIDVFPLLSSQDEIVISDKKNIGNLVVLDRDGKNPRTIYEVTKESTKTPYLLGTGLVGAY 441 Query: 262 APRFSSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P +S +G+ V + D + V +T+ S+S D + Sbjct: 442 QPSWSRDGEWVTFCVGTFFYKRYDAPARVMMVRRDGTGLREVTHGEENAGFPSFSADGKE 501 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIG 374 IV+ + L + + + +++ + P +SP G I FT+ G + + Sbjct: 502 IVYRVWDKENIGLRIYNIEKDEHRVLTETGD---NLPAYSPDGTRILFTRRHGHADYDLY 558 Query: 375 VMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSI 421 +K DG+ RL S WS G +++S G +++ + Sbjct: 559 TIKPDGTDLVRLTTHPSGDGHAVWSNDGSKIMWSGSVYGFRDEAALYDDTFQQYGQIWVM 618 Query: 422 DLNGRNETLINTPAY-ASDPQWVGFMD 447 + +G N+ ++ + S P +V ++D Sbjct: 619 NADGSNKHMVTDSKWEDSMPLYVPYLD 645 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 35/263 (13%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 + S T E ++F++ + L + + DG N R L + Sbjct: 35 APQAIASSTTEDVVEKKGVMFMNRIGPG---SSELYISNADGTNERKLLGENTVFEYSAE 91 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + + V + + + D + + + S+ A S +GK+ + Sbjct: 92 LASDGTSVYFTSERNGDGNSELFKANIDGSNIEEVVSSSSVEDAVSISPDGKKIAFVSTR 151 Query: 279 DEAM-DIYSVDLQSNATERLTNTLFINIS---------ASYSPDSSQIVFESDREGKEQ- 327 + +++ DL++ LT I S+SPD I F SDR + Sbjct: 152 EGYFSNVWIKDLETGELTNLTGAEHIQGDPMLPNSFLRPSWSPDGKWIAFSSDRNTNWRG 211 Query: 328 --------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +YV+ ++G + +R+ E SY P WSP G I+F +AI Sbjct: 212 HDYPIGWEHTQELSIYVIGADGQNFRRLVSKPEMSYGSPSWSPDGKRISF-------YAI 264 Query: 374 GVMKKDGSQERLLVEDSNLQAPT 396 G++ LV+D+ Q + Sbjct: 265 TTEDTWGARRYNLVQDTTSQIAS 287 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 41/244 (16%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEA 281 + V + +Y+ + K +G + +S+G + ++ D Sbjct: 51 KGVMFMNRIGPGSSELYISNADGTNERKLLGENTVFEYSAELASDGTSVYFTSERNGDGN 110 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKR 340 +++ ++ + E + ++ + + S SPD +I F S REG +++ + Sbjct: 111 SELFKANIDGSNIEEVVSSSSVEDAVSISPDGKKIAFVSTREGYFSNVWIKDLETGELTN 170 Query: 341 ISQDK--------EASYFDPVWSPQGDLIAFTKFSGEKFA---------------IGVMK 377 ++ + S+ P WSP G IAF+ + I V+ Sbjct: 171 LTGAEHIQGDPMLPNSFLRPSWSPDGKWIAFSSDRNTNWRGHDYPIGWEHTQELSIYVIG 230 Query: 378 KDGSQERLLVEDSNLQ--APTWSPSGRSLIF----------SRKKD--GDTGSKLYSIDL 423 DG R LV + +P+WSP G+ + F +R+ + DT S++ S+D+ Sbjct: 231 ADGQNFRRLVSKPEMSYGSPSWSPDGKRISFYAITTEDTWGARRYNLVQDTTSQIASVDV 290 Query: 424 -NGR 426 GR Sbjct: 291 ETGR 294 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 32/206 (15%) Query: 270 KRALISVQK--DEAMDIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDR--EG 324 K+ ++ + + + ++Y + +L SA + D + + F S+R +G Sbjct: 50 KKGVMFMNRIGPGSSELYISNADGTNERKLLGENTVFEYSAELASDGTSVYFTSERNGDG 109 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQE 383 +L+ +GS+ + + SP G IAF F + + + + Sbjct: 110 NSELFKANIDGSNIEEVVSSSSVED-AVSISPDGKKIAFVSTREGYFSNVWIKDLETGEL 168 Query: 384 RLLVEDSNLQA----------PTWSPSGRSLIFSRKKDGDTGS-------------KLYS 420 L ++Q P+WSP G+ + FS ++ + +Y Sbjct: 169 TNLTGAEHIQGDPMLPNSFLRPSWSPDGKWIAFSSDRNTNWRGHDYPIGWEHTQELSIYV 228 Query: 421 IDLNGRN-ETLINTPAYA-SDPQWVG 444 I +G+N L++ P + P W Sbjct: 229 IGADGQNFRRLVSKPEMSYGSPSWSP 254 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 20/141 (14%) Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGS 381 G +LY+ ++G++++++ + + + G + FT + + DGS Sbjct: 62 GSSELYISNADGTNERKLLGENTVFEYSAELASDGTSVYFTSERNGDGNSELFKANIDGS 121 Query: 382 QERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT------- 433 +V S++ A + SP G+ + F ++G S ++ DL T + Sbjct: 122 NIEEVVSSSSVEDAVSISPDGKKIAFVSTREGYF-SNVWIKDLETGELTNLTGAEHIQGD 180 Query: 434 ---------PAYASDPQWVGF 445 P+++ D +W+ F Sbjct: 181 PMLPNSFLRPSWSPDGKWIAF 201 >gi|78049130|ref|YP_365305.1| putative regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037560|emb|CAJ25305.1| putative regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 821 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 13/232 (5%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ +VAYA+ + L+ T + P+ + + Sbjct: 258 RPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPAPGVS 317 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G++ S Q D + + A R + +S S+SPD + Sbjct: 318 DRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRAL 377 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G ++ + + + +A FD P +SP G+ I F + + + Sbjct: 378 VFGSMTGKHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLR-NPQLGD 436 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +G ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 437 LWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 486 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 107/323 (33%), Gaps = 60/323 (18%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDE 234 R+ + S + S S+ V D A R L TP+ P +SP+ +++A++ + Sbjct: 281 RVAYASLT--SDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQIAFSRQAPD 338 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALISVQ--KDEAMDIYSVDLQS 291 RV + A + + + + +S +G+ + K A + +DL + Sbjct: 339 GSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLAT 398 Query: 292 NATERL---TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + L + + YSPD + IVF + + L+ + + G +R++ D A Sbjct: 399 GQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQ-LGDLWRIPAEGGVAERLTHD-NAD 456 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKK------------------------------ 378 W P G + F + + + + Sbjct: 457 IRGWSWLPDGSGLIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKP 516 Query: 379 ------------DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G + RL P +P GR LIF+ + G + Sbjct: 517 QFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYALWWGDVRKP 576 Query: 425 GR---NETLINTPAYASDPQWVG 444 G E L A+D W Sbjct: 577 GSVRLIEGLRPDSRQAAD--WSA 597 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 19/234 (8%) Query: 227 AYATYDDEDIL---RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAM 282 + ++ + + + R + I L P S +G R S+ D Sbjct: 234 VWTSWRPAPAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTG 293 Query: 283 DIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQ 338 V NA R+ T +S ++SPD QI F +G ++ + + G Sbjct: 294 TSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAA 353 Query: 339 KR-ISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLL----VEDSN 391 R + + A WSP G + F +G + + Q + L Sbjct: 354 SREVMRCDGADMLSFSWSPDGRALVFGSMTGKHGAARMRRLDLATGQWQTLDYPAQAGDF 413 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 AP +SP G ++F R L+ I G E L + A W+ Sbjct: 414 DYAPRYSPDGNWIVFLRN---PQLGDLWRIPAEGGVAERLTHDNADIRGWSWLP 464 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVF---ESDREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD +++ + SDR G L N + + Sbjct: 254 GSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTSDRTGTSILVKTTDNAYPRVLETPA 313 Query: 345 KEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPS 400 S P WSP G IAF++ + + + G S+E + + +++ + +WSP Sbjct: 314 PGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPD 373 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETL---------INTPAYASDPQWVGFM 446 GR+L+F +++ +DL G+ +TL P Y+ D W+ F+ Sbjct: 374 GRALVFGSMTGKHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFL 429 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 82/292 (28%), Gaps = 52/292 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 ++F S + G + + + PR+SP+ + + D Sbjct: 377 LVFGSMTGKHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGD 436 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ----- 290 + R+ +R+ + + I + +G + + D +Y +DL+ Sbjct: 437 LWRI----PAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEARLYRLDLRDHSLH 492 Query: 291 --------------------------------------SNATERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 493 DVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPD 552 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q++F S+R G L+ R+ + + S WS + + Sbjct: 553 GRQLIFASNRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQRVLVSGSDAAGH 612 Query: 372 A--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYS 420 A V G RL V P R L+ + DG T + LY Sbjct: 613 AALFEVTPSSGQVVRLPVPQPRPLQAIHLPDPDRLLVLAAADDGHTFATLYD 664 >gi|268532750|ref|XP_002631503.1| C. briggsae CBR-TAG-10 protein [Caenorhabditis briggsae] Length = 424 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 93/223 (41%), Gaps = 31/223 (13%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 T+D D ++ +D R +R+ N S +G + + + +++Y ++ Sbjct: 182 YTWDIFDDYDIFKVD-RYGNFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMN 240 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--------------------QL 328 + R+TNTL + + ++PD +++F + R + +L Sbjct: 241 TDGSNLTRVTNTLGYDGGSFFTPDGKRLIFRASRPKTDEEIAKYKKLLSYNLVEPIAMEL 300 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQ 382 +++ +G + K+I++ EA++ + + I F+ F++ ++ DG+ Sbjct: 301 FIVDIDGKNMKQITKLGEANWAPYMLN-DNKRIVFSSNYDAAANGFGAFSLYMVNVDGTG 359 Query: 383 -ERLLVEDSNLQAPTW-SPSGRSLIFSRKKDG-DTGSKLYSID 422 ER+ ++ + S G+ L++ ++G L+ D Sbjct: 360 LERITYGENQFNSFAMQSYDGKKLVWGSSRNGTQYELNLFIAD 402 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 26/184 (14%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + DI+ VD N +RLTN+ + SPD ++I F S R G +LYVM + Sbjct: 182 YTWDIFDDYDIFKVDRYGNFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNT 241 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--------------------FAI 373 +GS+ R++ + ++P G + F + + Sbjct: 242 DGSNLTRVT-NTLGYDGGSFFTPDGKRLIFRASRPKTDEEIAKYKKLLSYNLVEPIAMEL 300 Query: 374 GVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGRNE 428 ++ DG + + + AP + ++FS D G LY ++++G Sbjct: 301 FIVDIDGKNMKQITKLGEANWAPYMLNDNKRIVFSSNYDAAANGFGAFSLYMVNVDGTGL 360 Query: 429 TLIN 432 I Sbjct: 361 ERIT 364 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 83/217 (38%), Gaps = 30/217 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +DR G N + E SP+ K+A+ + D L +Y+M+T Sbjct: 189 DYDIFKVDRYG-NFVQRLTNSPGYDAEGVVSPDGTKIAFTSIRSGD-LELYVMNTD-GSN 245 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAM--------------------DIYSVDL 289 R+ N F+ +GKR + + + +++ VD+ Sbjct: 246 LTRVTNTLGYDGGSFFTPDGKRLIFRASRPKTDEEIAKYKKLLSYNLVEPIAMELFIVDI 305 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ 343 +++T N + D+ +IVF S+ + G LY++ +G+ +RI+ Sbjct: 306 DGKNMKQITKLGEANWAPYMLNDNKRIVFSSNYDAAANGFGAFSLYMVNVDGTGLERITY 365 Query: 344 DKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + + S G + + + +G ++ + + D Sbjct: 366 GENQFNSFAMQSYDGKKLVWGSSRNGTQYELNLFIAD 402 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 94/293 (32%), Gaps = 63/293 (21%) Query: 195 VMDRDG----ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRID-- 247 V+ DG AN++ LT FS + K+ D ++Y +D D Sbjct: 55 VVHFDGETHLANVKQLTFGGMNAEGY--FSFDNSKLTLQATGYGTDCDQIYELDLNTDPK 112 Query: 248 -RAPKRIGNFRSMILAPRF--SSNGKRALISVQKDEAMDIYSVDLQ------------SN 292 + KRI F ++ L + + D+ ++ Sbjct: 113 LQTLKRISTGLGGTTCSYFYKEADNNHRLYAGNWWNVKIDNTTDVSKTCPEKKCANPKTD 172 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ++L NT + D ++ + G+ +R++ + + Sbjct: 173 ELKQLCNTS----------------YTWDIFDDYDIFKVDRYGNFVQRLT-NSPGYDAEG 215 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 V SP G IAFT + VM DGS + ++P G+ LIF + Sbjct: 216 VVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTRVTNTLGYDGGSFFTPDGKRLIFRASRP 275 Query: 412 G------------------DTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +L+ +D++G+N I A+ W +M Sbjct: 276 KTDEEIAKYKKLLSYNLVEPIAMELFIVDIDGKNMKQITKLGEAN---WAPYM 325 >gi|325926634|ref|ZP_08187948.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas perforans 91-118] gi|325542986|gb|EGD14435.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas perforans 91-118] Length = 779 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 13/232 (5%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ +VAYA+ + L+ T + P+ + + Sbjct: 216 RPYQVITAGGGFDLTPSLSPDGARVAYASLTRDRTGTSILVKTTDNAYPRVLETPAPGVS 275 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G++ S Q D + + A R + +S S+SPD + Sbjct: 276 DRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRAL 335 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G ++ + + + +A FD P +SP G+ I F + + + Sbjct: 336 VFGSMTGTHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLR-NPQLGD 394 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +G ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 395 LWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 444 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 19/234 (8%) Query: 227 AYATYDDEDIL---RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAM 282 + ++ + + + R + I L P S +G R S+ +D Sbjct: 192 VWTSWRPAPAPETAQAHAVLGSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTRDRTG 251 Query: 283 DIYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQ 338 V NA R+ T +S ++SPD QI F +G ++ + + G Sbjct: 252 TSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAA 311 Query: 339 KR-ISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLL----VEDSN 391 R + + A WSP G + F +G + + Q + L Sbjct: 312 SREVMRCDGADMLSFSWSPDGRALVFGSMTGTHGAARMRRLDLATGQWQTLDYPAQAGDF 371 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 AP +SP G ++F R L+ I G E L + A W+ Sbjct: 372 DYAPRYSPDGNWIVFLRN---PQLGDLWRIPAEGGVAERLTHDNADIRGWSWLP 422 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 105/323 (32%), Gaps = 60/323 (18%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDE 234 R+ + S + S+ V D A R L TP+ P +SP+ +++A++ + Sbjct: 239 RVAYASLTR--DRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGRQIAFSRQAPD 296 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALISVQKD--EAMDIYSVDLQS 291 RV + A + + + + +S +G+ + A + +DL + Sbjct: 297 GSCRVMIAAATGPAASREVMRCDGADMLSFSWSPDGRALVFGSMTGTHGAARMRRLDLAT 356 Query: 292 NATERL---TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + L + + YSPD + IVF + + L+ + + G +R++ D A Sbjct: 357 GQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQ-LGDLWRIPAEGGVAERLTHD-NAD 414 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKK------------------------------ 378 W P G + F + + + + Sbjct: 415 IRGWSWLPDGSGLIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKP 474 Query: 379 ------------DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 +G + RL P +P GR LIF+ + G + Sbjct: 475 QFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYALWWGDVRKP 534 Query: 425 GR---NETLINTPAYASDPQWVG 444 G E L A+D W Sbjct: 535 GSVRLIEGLRPDSRQAAD--WSA 555 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD +++ + S DR G L N + + Sbjct: 212 GSPKRPYQVITAGGGFDLTPSLSPDGARVAYASLTRDRTGTSILVKTTDNAYPRVLETPA 271 Query: 345 KEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPS 400 S P WSP G IAF++ + + + G S+E + + +++ + +WSP Sbjct: 272 PGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVMRCDGADMLSFSWSPD 331 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETL---------INTPAYASDPQWVGFM 446 GR+L+F +++ +DL G+ +TL P Y+ D W+ F+ Sbjct: 332 GRALVFGSMTGTHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFL 387 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 82/292 (28%), Gaps = 52/292 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 ++F S + G + + + PR+SP+ + + D Sbjct: 335 LVFGSMTGTHGAARMRRLDLATGQWQTLDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGD 394 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ----- 290 + R+ +R+ + + I + +G + + D +Y +DL+ Sbjct: 395 LWRI----PAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEARLYRLDLRDHSLH 450 Query: 291 --------------------------------------SNATERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 451 DVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPD 510 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q++F S+R G L+ R+ + + S WS + + Sbjct: 511 GRQLIFASNRSGAYALWWGDVRKPGSVRLIEGLRPDSRQAADWSADSQRVLVSGSDAAGH 570 Query: 372 A--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYS 420 A V G RL V P R L+ + DG T + LY Sbjct: 571 AALFEVTPSSGQVVRLPVPQPRPLQAIHLPDPHRLLVLAAADDGHTFATLYD 622 >gi|162452828|ref|YP_001615195.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161163410|emb|CAN94715.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1532 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 112/288 (38%), Gaps = 29/288 (10%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D +Y + G + VV+ + V + DG+ + + +++ F Sbjct: 1055 DAVYSAAFSPDG----------KRVVTASWDKTARVWNADGSGEPRILRGHEDVVYSAAF 1104 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++ A++D + + P+ + + + + FS++G+R + + D Sbjct: 1105 SPDGERIVTASWDK----TARVWNADGSGEPRILRGHQDRVYSAVFSADGRRIV-TASYD 1159 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQ 338 + +++ + + L SA++SPD +IV S DR + V + + Sbjct: 1160 KTARVWNAE-STGEPLSLRGHDDSVSSAAFSPDGKRIVTASWDRTAR----VWNAEVAGA 1214 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPT 396 I + E F +SP G I V DG+ E L++ +++ Sbjct: 1215 PVILRGHEGEVFSAAFSPDGKRIVTASDDKTA---RVWNADGTGEPLVIRGHADRVRSAA 1271 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +SP G ++ + D +++++ D +G TL + Sbjct: 1272 FSPDGERIVTAS---FDKTARVWNADGSGEPVTLRGHADRVRSAAFSP 1316 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 127/366 (34%), Gaps = 24/366 (6%) Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGA-QVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ 138 N ++ ++I + W + GA + LV + + F D + Sbjct: 932 NSVAFSPDGERIVTASDDRTARVWRTAGAGEPLV---LRGHEEGVYSAAFS----PDGGR 984 Query: 139 IIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR 198 I+ F + W+ A + + E F + +V+ + V Sbjct: 985 IVTASFDRTARVWK--ADGTGELVVLRGHAEPVYFAA-FSLDGGRIVTSSFDRTARVWKA 1041 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG + P + ++ FSP+ ++V A++D + + P+ + Sbjct: 1042 DGTGEPVVLPGHEDAVYSAAFSPDGKRVVTASWDK----TARVWNADGSGEPRILRGHED 1097 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 ++ + FS +G+R + + D+ +++ D S L SA +S D +IV Sbjct: 1098 VVYSAAFSPDGERIV-TASWDKTARVWNAD-GSGEPRILRGHQDRVYSAVFSADGRRIVT 1155 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 S + V + + + + + S +SP G I + + + Sbjct: 1156 ASY---DKTARVWNAESTGEPLSLRGHDDSVSSAAFSPDGKRIVTASWD-RTARVWNAEV 1211 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 G+ L + + + +SP G+ ++ + D +++++ D G + Sbjct: 1212 AGAPVILRGHEGEVFSAAFSPDGKRIVTASD---DKTARVWNADGTGEPLVIRGHADRVR 1268 Query: 439 DPQWVG 444 + Sbjct: 1269 SAAFSP 1274 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 99/263 (37%), Gaps = 13/263 (4%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + +V+ + V + + A + + +F FSP+ +++ A+ D + Sbjct: 1193 KRIVTASWDRTARVWNAEVAGAPVILRGHEGEVFSAAFSPDGKRIVTASDDK----TARV 1248 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P I + + FS +G+R + + D+ +++ D S L Sbjct: 1249 WNADGTGEPLVIRGHADRVRSAAFSPDGERIV-TASFDKTARVWNAD-GSGEPVTLRGHA 1306 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SA++SPD +IV S V ++G+ + + + + +SP G + Sbjct: 1307 DRVRSAAFSPDGERIVTASY---DNTARVWNADGTGEPVVLRGHDRWVVSAAFSPDGKRV 1363 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + + G L + + A +SP G+ ++ + D +++++ Sbjct: 1364 VTASWD-KTVRVWNADGTGKPVVLRGHEHLVNAAVFSPDGKYVVTASD---DKTTRIWNA 1419 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 D G L + A + + Sbjct: 1420 DGTGEPLVLRGSDASVNAVAYSP 1442 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 93/238 (39%), Gaps = 10/238 (4%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E F++ + +V+ + V + DG + + FSP+ +++ Sbjct: 1221 HEGEVFSAAFSPDGKRIVTASDDKTARVWNADGTGEPLVIRGHADRVRSAAFSPDGERIV 1280 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 A++D + + P + + + FS +G+R + + D +++ Sbjct: 1281 TASFDK----TARVWNADGSGEPVTLRGHADRVRSAAFSPDGERIV-TASYDNTARVWNA 1335 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D + L +SA++SPD ++V S + + V ++G+ + + + E Sbjct: 1336 D-GTGEPVVLRGHDRWVVSAAFSPDGKRVVTAS---WDKTVRVWNADGTGKPVVLRGHEH 1391 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 V+SP G + T + I G L D+++ A +SP G+ ++ Sbjct: 1392 LVNAAVFSPDGKYVV-TASDDKTTRIWNADGTGEPLVLRGSDASVNAVAYSPDGKRIV 1448 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 19/244 (7%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 ++ V + DG + D + FSP+ +++ A+ D + T Sbjct: 907 DRAVRVWNADGTGEPLVLRGHDAPINSVAFSPDGERIVTASDDR----TARVWRTAGAGE 962 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 P + + + FS +G R + + D ++ D + L A++ Sbjct: 963 PLVLRGHEEGVYSAAFSPDGGRIV-TASFDRTARVWKAD-GTGELVVLRGHAEPVYFAAF 1020 Query: 310 SPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 S D +IV S DR + V +++G+ + + E + + +SP G + + Sbjct: 1021 SLDGGRIVTSSFDRTAR----VWKADGTGEPVVLPGHEDAVYSAAFSPDGKRVVTASWDK 1076 Query: 369 EKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 V DGS E ++ + +SP G ++ + D +++++ D +G Sbjct: 1077 TA---RVWNADGSGEPRILRGHEDVVYSAAFSPDGERIVTASW---DKTARVWNADGSGE 1130 Query: 427 NETL 430 L Sbjct: 1131 PRIL 1134 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 93/244 (38%), Gaps = 21/244 (8%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + + + FSP+ + +A D V + + P + + I + Sbjct: 880 RVVLTHPDFVIRAAFSPDGKHIATICADR----AVRVWNADGTGEPLVLRGHDAPINSVA 935 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DRE 323 FS +G+R + + D ++ + L SA++SPD +IV S DR Sbjct: 936 FSPDGERIV-TASDDRTARVWRT-AGAGEPLVLRGHEEGVYSAAFSPDGGRIVTASFDRT 993 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + V +++G+ + + + + +S G I + F + G Sbjct: 994 AR----VWKADGTGELVVLRGHAEPVYFAAFSLDGGRIVTSSFD-RTARVWKADGTGEPV 1048 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL------INTPAYA 437 L + + + +SP G+ ++ + D +++++ D +G L + + A++ Sbjct: 1049 VLPGHEDAVYSAAFSPDGKRVVTASW---DKTARVWNADGSGEPRILRGHEDVVYSAAFS 1105 Query: 438 SDPQ 441 D + Sbjct: 1106 PDGE 1109 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 72/196 (36%), Gaps = 13/196 (6%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 + + ++ FS +GK ++ D A+ +++ D + L S ++S Sbjct: 880 RVVLTHPDFVIRAAFSPDGKHIA-TICADRAVRVWNAD-GTGEPLVLRGHDAPINSVAFS 937 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD +IV SD V ++ G+ + + + E + +SP G I F Sbjct: 938 PDGERIVTASD---DRTARVWRTAGAGEPLVLRGHEEGVYSAAFSPDGGRIVTASFDRTA 994 Query: 371 FAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 V K DG+ E +++ + +S G ++ S D ++++ D G Sbjct: 995 ---RVWKADGTGELVVLRGHAEPVYFAAFSLDGGRIVTSS---FDRTARVWKADGTGEPV 1048 Query: 429 TLINTPAYASDPQWVG 444 L + Sbjct: 1049 VLPGHEDAVYSAAFSP 1064 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 6/140 (4%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 E +V+ N+ V + DG + D+ + FSP+ ++V A++D V + Sbjct: 1319 ERIVTASYDNTARVWNADGTGEPVVLRGHDRWVVSAAFSPDGKRVVTASWDK----TVRV 1374 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P + ++ A FS +GK +++ D+ I++ D + Sbjct: 1375 WNADGTGKPVVLRGHEHLVNAAVFSPDGKY-VVTASDDKTTRIWNADGTGEPLVLRGSDA 1433 Query: 302 FINISASYSPDSSQIVFESD 321 +N A YSPD +IV SD Sbjct: 1434 SVNAVA-YSPDGKRIVTGSD 1452 >gi|298376771|ref|ZP_06986726.1| MdsD protein [Bacteroides sp. 3_1_19] gi|298266649|gb|EFI08307.1| MdsD protein [Bacteroides sp. 3_1_19] Length = 1080 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 121/337 (35%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + ++D + K R T ++ G + F + S Sbjct: 196 DIWMYDTQTGKH---TNLTDHAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNTPQS 252 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 V +R+L+ S D L ++ + + Y + +V + R Sbjct: 253 IT-----AVTKFKTHPVRFLSTSSDNTLC---YTYDGE--IYTQRPGVNPQKVRIDLIRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ N + S +GK+ ++++ +++ N T+++TNT Sbjct: 303 DQEQISDLNSSKGATSATVSPDGKQIALTLRG----EVFVTSADYNTTKQITNTPAAETG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWS 355 +SPD+ + + S+R G QLY+ + +++ + K P +S Sbjct: 359 VCFSPDNRTLAYASERGGNWQLYLAKIARKEEANFPNATIIEEEVLLPSKTVERNYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P +AF + ++ + V+ + + R + + S + +WSP G+ L F Sbjct: 419 PDAKELAFIE---DRMRLMVVNLETKKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFI 475 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 K D S + + G T + Y S PQWV Sbjct: 476 GNKH-DPYSDIGLVSAQGGEITNLTNSGYTSTSPQWV 511 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 34/215 (15%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S + P + S +G + D IY V + +LT + +SP Sbjct: 16 SYAVTPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQASYECTPIWSP 71 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 D QI F SDR G L+VM SNG + ++ AS ++P G + F+ Sbjct: 72 DGKQIAFASDRNGNFDLFVMPSNGGTAQCLTT-HSASEIPSAFTPDGKYVLFSASIQDPA 130 Query: 367 ------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------- 411 + + + G + ++ + + SG++ ++ +K Sbjct: 131 QSALFPTSAMTELYKVPIGGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHH 189 Query: 412 -GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L + + + Sbjct: 190 TSSVTRDIWMYDTQTGKHTNLTDHAGEDRNAVFTP 224 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 35/246 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 29 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQASYECTPIWSPDGKQIAFASDR 82 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + + LT I ++++PD ++F + + Sbjct: 83 NGNFDLFVMPSNGGTAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTE 142 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S I + Sbjct: 143 LYKVPIGGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSVTRDIWM 199 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L + + ++P G+++ F +++G + +YS LN +++ Sbjct: 200 YDTQTGKHTNLTDHAGEDRNAVFTPDGQTVYFLSERNGGS-FNVYSFPLN-TPQSITAVT 257 Query: 435 AYASDP 440 + + P Sbjct: 258 KFKTHP 263 Score = 77.0 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 40 YKGDIYKVPAKGGTATQLTTQAS-YECTPIWSPDGKQIAFASDRNGNFDLFVMPSN--GG 96 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERL 297 + + + + F+ +GK L S + +Y V + TE++ Sbjct: 97 TAQCLTTHSASEIPSAFTPDGKYVLFSASIQDPAQSALFPTSAMTELYKVPIGGGRTEQV 156 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ D Sbjct: 157 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSVTRDIWMYDTQTGKHTNLT-D 212 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDG 380 + V++P G + F ++ +G F + + Sbjct: 213 HAGEDRNAVFTPDGQTVYFLSERNGGSFNVYSFPLNT 249 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 53/352 (15%), Positives = 121/352 (34%), Gaps = 48/352 (13%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK L + ++ V K+ ++PA+ + + + + G+ Sbjct: 319 ATVSPDGKQIALTLRGEVF-VTSADYNTTKQITNTPAAETGVCFSPDNRTLAYASERGGN 377 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + ++ + ++ L PS+ P+FSP+ +++A+ Sbjct: 378 WQLYLAKIARKEEANFPNATII-------EEEVLLPSKTVERNYPQFSPDAKELAFI--- 427 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAP-----RFSSNGKR--ALISVQK-DEAMDI 284 ED +R+ +++ + +++ + + +S +GK K D DI Sbjct: 428 -EDRMRLMVVNLET-KKVRQVTDGSTWYSTAGGFDYSWSPDGKWFTLRFIGNKHDPYSDI 485 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q LTN+ + + S + D + I+F ++R G L M Sbjct: 486 GLVSAQGGEITNLTNSGYTSTSPQWVLDGNAILFTTERYGMRAHASWGSLNDAMLVFMNQ 545 Query: 334 NGSDQKRISQDKE-------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 + D+ R+S++ + + + + Sbjct: 546 DAYDKFRLSKEDYELQKELEKEQKEVTGDKTDDKKKEDKADEKKDEKPKDIVVELKGIQD 605 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 RL S + + S +G +L + + L+ +DL + L++ Sbjct: 606 RILRLTPNSSEMGSAVISKNGETLYYFS--AFEDKYDLWKMDLRKKETKLLH 655 >gi|320095137|ref|ZP_08026845.1| WD domain protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977919|gb|EFW09554.1| WD domain protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 1167 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 129/401 (32%), Gaps = 59/401 (14%) Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 ++S+V+ L R + ++ + Q + W+ GAQ+L V Sbjct: 749 TSGTPQQLSDVLIAPLTRHGLLRILPE---IQILGGQSDDVTAVAWSPDGAQLL---TVS 802 Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFF--SSPASW-RKIAHTISDDIYQSITGEKGDFN 174 ++G R+WD + + + +W H ++ I + I Sbjct: 803 RDG------TVRVWDATTGENTLTLTHTESVTAVAWSPDSTHILTAGIDRHIRIWNLSRK 856 Query: 175 SRILFVSESVVSGIIKNS----------------LCVMDRDGANIRYLTPSRDQILFEPR 218 + I + I+ S + D D I++ D L Sbjct: 857 TNIALIHPFGWFRYIEWSPDSTQVLAGTEEGTVGIWSTDNDHYTIKF---EHDCYLQAAL 913 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ + + V++ +T + N S + + +S + K + +++ Sbjct: 914 WSPDSKHIL-----TGSGKSVHIWNTATGTIVLTL-NHSSWVRSVAWSPDSKHIAVGLEQ 967 Query: 279 DEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + + LT N S ++SPD S+IV +++ + + V Sbjct: 968 NAT---CVFTAATG-ATVLTLNHSSWVRSVAWSPDGSKIVTQTNSD----ICVWDMRTGK 1019 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 + + + WSP + I G+ L + + TW Sbjct: 1020 KTH-TFAHNGNLIMAEWSPDSTHLLMKLKHNT--HIW-SSITGNTTLTLTHTGRINSATW 1075 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAY 436 SP G ++ + D +++++ G + P Sbjct: 1076 SPDGNHILTASD---DGTARIWNA-ATGEPVRFFITALPGG 1112 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 102/294 (34%), Gaps = 47/294 (15%) Query: 113 TGRVIKEGKDRLRVEFR--------LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 T + D ++F LW + + G I +T + I Sbjct: 888 TVGIWSTDNDHYTIKFEHDCYLQAALWSPDSKHILTGSGKSV------HIWNTATGTIVL 941 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 ++ + S+ + G+ +N+ CV LT + + +SP+ Sbjct: 942 TLNHSSWVRSVAWSPDSKHIAVGLEQNATCVFTA-ATGATVLTLNHSSWVRSVAWSPDGS 1000 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+ T D + + D R + ++ +S + L+ ++ + + Sbjct: 1001 KIVTQTNSD-----ICVWDMRTGKKTHTFA-HNGNLIMAEWSPDSTHLLMKLKHNTHIWS 1054 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQ----------IVFESDREGKEQLYVMQSN 334 + N T LT+T IN SA++SPD + ++ + + ++ Sbjct: 1055 ---SITGNTTLTLTHTGRIN-SATWSPDGNHILTASDDGTARIWNAATGEPVRFFITALP 1110 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G + ++ D+ SP + ++AI DG++ER+ VE Sbjct: 1111 GGECAVLTPDQTRVIGA---SP------YAWRWLGRYAI---HPDGTRERIPVE 1152 >gi|294141048|ref|YP_003557026.1| hypothetical protein SVI_2277 [Shewanella violacea DSS12] gi|293327517|dbj|BAJ02248.1| hypothetical protein [Shewanella violacea DSS12] Length = 703 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 5/229 (2%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 FSP+ + + + DE + +++ N I + +G R + S Sbjct: 318 FSPDGKHLVISRTLDEGFSEDLFLFDISKGELEQLTNSEGDIKGLAWHPDGDRIIFSANV 377 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D Y L+ T +L N + + P+S ++F + +E + Sbjct: 378 SGNRDGYIFSLKDKETTKL-NIPGFSY-PRFIPNSQDVIFHNWKELLSLSSLSLGGSLAT 435 Query: 339 KRI-SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPT 396 E SY P +SP + +AF + I + DG++ L S+L P+ Sbjct: 436 SPFPLIQSEYSYHSPHYSPAINKLAFISNESGSYEIWMSNLDGTERTRLTSLSSHLTFPS 495 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD-PQWVG 444 WS G+ + F K + LY +++N + +++ P W+ Sbjct: 496 WSHDGKYIAFLGPKTKSKINSLYVLNVNTQTVRQVSSEFKQHFRPSWLA 544 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 102/260 (39%), Gaps = 21/260 (8%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--- 259 + + ++ F SP+ + +AY D+ V L+D + + + Sbjct: 252 PKVIGQCTGEVDFSLAISPDSKTLAYVGSDNARQTSVKLLDLNGNEKTHILYKCQDDCLY 311 Query: 260 -ILAPRFSSNGKRALISVQKDEAM--DIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + FS +GK +IS DE D++ D+ E+LTN+ ++ PD +I Sbjct: 312 EEVDVEFSPDGKHLVISRTLDEGFSEDLFLFDISKGELEQLTNSEGDIKGLAWHPDGDRI 371 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF---SGEKFAI 373 +F ++ G Y+ + +++ + P + P + F + Sbjct: 372 IFSANVSGNRDGYIFSLKDKETTKLNIPG---FSYPRFIPNSQDVIFHNWKELLSLSSLS 428 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 S L+ + + +P +SP+ L F + G +++ +L+G T + + Sbjct: 429 LGGSLATSPFPLIQSEYSYHSPHYSPAINKLAFISNESGS--YEIWMSNLDGTERTRLTS 486 Query: 434 -------PAYASDPQWVGFM 446 P+++ D +++ F+ Sbjct: 487 LSSHLTFPSWSHDGKYIAFL 506 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 95/250 (38%), Gaps = 19/250 (7%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD-TRIDRAPKRIGNFRSMILAPRFSS 267 S P SP+ Q + Y+ +Y+ + +D +P+++ + S Sbjct: 164 SDPGREVYPSISPDNQYLVYSWRRIGQRPNLYIKSMSDLDTSPRQLTFSEFYEGRVVWHS 223 Query: 268 NGKRALI-----SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-SD 321 N + + E + + + L+ + T ++ S + SPDS + + SD Sbjct: 224 NSEDIYYQRKHWIYDQCEIVQLNIITLEPKVIGQCTGE--VDFSLAISPDSKTLAYVGSD 281 Query: 322 REGKEQLYVMQSNGSDQKRISQ----DKEASYFDPVWSPQGDLIAFTKFSGEKF--AIGV 375 + + ++ NG+++ I D D +SP G + ++ E F + + Sbjct: 282 NARQTSVKLLDLNGNEKTHILYKCQDDCLYEEVDVEFSPDGKHLVISRTLDEGFSEDLFL 341 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + L +++ W P G +IFS G+ Y L + T +N P Sbjct: 342 FDISKGELEQLTNSEGDIKGLAWHPDGDRIIFSANVSGNRDG--YIFSLKDKETTKLNIP 399 Query: 435 AYASDPQWVG 444 + S P+++ Sbjct: 400 GF-SYPRFIP 408 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 92/276 (33%), Gaps = 29/276 (10%) Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA-HTISDDIYQSITGEKGDFN 174 + + + + L+D+ + ++ +S + +A H D I S G+ + Sbjct: 327 ISRTLDEGFSEDLFLFDISKGEL---EQLTNSEGDIKGLAWHPDGDRIIFS-ANVSGNRD 382 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I + + + T PRF PN Q V + + + Sbjct: 383 GYIFSLKD---------------------KETTKLNIPGFSYPRFIPNSQDVIFHNWKEL 421 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 L + + +P + +P +S + + + +I+ +L Sbjct: 422 LSLSSLSLGGSLATSPFPLIQSEYSYHSPHYSPAINKLAFISNESGSYEIWMSNLDGTER 481 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDP 352 RLT+ S+S D I F + LYV+ N +++S + + +F P Sbjct: 482 TRLTSLSSHLTFPSWSHDGKYIAFLGPKTKSKINSLYVLNVNTQTVRQVSSEFKQ-HFRP 540 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 W I S F++ +G L++ Sbjct: 541 SWLADDSGIIAAAKSDNVFSLYAFPINGDLPYKLLD 576 >gi|308493667|ref|XP_003109023.1| CRE-TAG-10 protein [Caenorhabditis remanei] gi|308247580|gb|EFO91532.1| CRE-TAG-10 protein [Caenorhabditis remanei] Length = 496 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 84/227 (37%), Gaps = 38/227 (16%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y +D R +R+ + S +G + + + +++Y Sbjct: 201 FIYIHFDSR------FQVDRYGNFVQRLTDTPGYDAEGVVSPDGTKIAFTSIRSGDLELY 254 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------------- 326 ++ + ++TN L + + ++PD +++F + R Sbjct: 255 VMNTDGSNLTQVTNELGYDGGSFFTPDGKRLIFRASRPKTPEDIAKYKKLLSYNLVEPIA 314 Query: 327 -QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKD 379 +L+++ +G + ++I+ EA++ + + I F+ F+I ++ D Sbjct: 315 MELFIVDIDGKNMRQITHLGEANWAPYMLN-DNKRIVFSSNYNAAANGFGAFSIFMINDD 373 Query: 380 GSQERLLVEDSNLQAPTW---SPSGRSLIFSRKKDG-DTGSKLYSID 422 G+ + Q ++ S G+ L++ ++G + L+ D Sbjct: 374 GTGLEQIT-FGKDQFNSFAMQSYDGKKLVWGSSRNGTNYALNLFIAD 419 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%) Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + VD N +RLT+T + SPD ++I F S R G +LYVM ++GS+ +++ + Sbjct: 210 FQVDRYGNFVQRLTDTPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTQVTNE 269 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEK--------------------FAIGVMKKDGSQER 384 ++P G + F + + ++ DG R Sbjct: 270 L-GYDGGSFFTPDGKRLIFRASRPKTPEDIAKYKKLLSYNLVEPIAMELFIVDIDGKNMR 328 Query: 385 LLVEDS-NLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN 432 + AP + ++FS +G ++ I+ +G I Sbjct: 329 QITHLGEANWAPYMLNDNKRIVFSSNYNAAANGFGAFSIFMINDDGTGLEQIT 381 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 30/211 (14%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 +DR G N E SP+ K+A+ + D L +Y+M+T ++ N Sbjct: 212 VDRYG-NFVQRLTDTPGYDAEGVVSPDGTKIAFTSIRSGD-LELYVMNTD-GSNLTQVTN 268 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAM--------------------DIYSVDLQSNATE 295 F+ +GKR + + + +++ VD+ Sbjct: 269 ELGYDGGSFFTPDGKRLIFRASRPKTPEDIAKYKKLLSYNLVEPIAMELFIVDIDGKNMR 328 Query: 296 RLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQDKEASY 349 ++T+ N + D+ +IVF S+ G ++++ +G+ ++I+ K+ Sbjct: 329 QITHLGEANWAPYMLNDNKRIVFSSNYNAAANGFGAFSIFMINDDGTGLEQITFGKDQFN 388 Query: 350 FDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + S G + + + +G +A+ + D Sbjct: 389 SFAMQSYDGKKLVWGSSRNGTNYALNLFIAD 419 Score = 83.5 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 23/137 (16%) Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + G+ +R++ D + V SP G IAFT + VM DGS + Sbjct: 210 FQVDRYGNFVQRLT-DTPGYDAEGVVSPDGTKIAFTSIRSGDLELYVMNTDGSNLTQVTN 268 Query: 389 D-SNLQAPTWSPSGRSLIFSRKKDGDT------------------GSKLYSIDLNGRNET 429 + ++P G+ LIF + +L+ +D++G+N Sbjct: 269 ELGYDGGSFFTPDGKRLIFRASRPKTPEDIAKYKKLLSYNLVEPIAMELFIVDIDGKNMR 328 Query: 430 LINTPAYASDPQWVGFM 446 I A+ W +M Sbjct: 329 QITHLGEAN---WAPYM 342 Score = 40.0 bits (92), Expect = 0.83, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 41/103 (39%), Gaps = 8/103 (7%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-----DILRVYLMDTRI 246 L ++D DG N+R +T + + P + +++ +++ + +++++ Sbjct: 316 ELFIVDIDGKNMRQITHLGE-ANWAPYMLNDNKRIVFSSNYNAAANGFGAFSIFMINDDG 374 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + S +GK+ + ++ Y+++L Sbjct: 375 TGLEQITFGKDQFNSFAMQSYDGKKLVWGSSRNGT--NYALNL 415 >gi|29346818|ref|NP_810321.1| putative Tricorn-like protease [Bacteroides thetaiotaomicron VPI-5482] gi|29338715|gb|AAO76515.1| putative Tricorn-like protease [Bacteroides thetaiotaomicron VPI-5482] Length = 1102 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +GK + + D IY V +Q +LT Sbjct: 11 VLTALSSYAITPLWMRDARISPDGKEIVFCYKGD----IYKVPVQGGTATQLTTQASYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMSADGGTARRLTY-HSASEIPSAFTPDGKFVLFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + SG++ ++ +K Sbjct: 126 SIQDPAQSALFPTGAMTELYKVPVTGGRTEQVLATP-AEWVCFDKSGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L N +P + Sbjct: 185 EWRKHHTSSITRDVWLYDASTGKHTNLTNREGEDRNPVYAP 225 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 79/226 (34%), Gaps = 33/226 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ +++ + DI +V + ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGKEIVFCY--KGDIYKVPVQ----GGTATQLTTQASYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + RLT I ++++PD ++F + Sbjct: 78 AFASDRNGNFDLFIMSADGGTARRLTYHSASEIPSAFTPDGKFVLFSASIQDPAQSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + S G + S Sbjct: 138 TGAMTELYKVPVTGGRTEQVL-ATPAEWVCFDKS--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDT 414 + + + L + + P ++P G S+ F +++G + Sbjct: 195 TRDVWLYDASTGKHTNLTNREGEDRNPVYAPDGNSVYFLSERNGGS 240 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 105/323 (32%), Gaps = 82/323 (25%) Query: 195 VMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D + ++ +R+ P ++P+ V + + + VY + K I Sbjct: 198 VWLYDASTGKHTNLTNREGEDRNPVYAPDGNSVYFLSERNGGSFNVYNFALNTPQEVKAI 257 Query: 254 GNFRSM-----------------------------------------------------I 260 FR+ Sbjct: 258 TTFRTHPVRFLSISDKGTLCYTYDGELYTQEPNARPKKVNVDLVRDDEKEIATLRFSQGA 317 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + S +GK+ V+ D ++ T+++TNT S++PD+ +V+ S Sbjct: 318 TSASVSPDGKQVAFIVRGD----VFVTSTDYATTKQITNTPAKESGVSFAPDNRTLVYAS 373 Query: 321 DREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R G QLY + +++ + K P +SP G +AF + + Sbjct: 374 ERTGNWQLYTAKIARKEEANFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIE---D 430 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSI 421 + + V+ + R + + S WSP G+ L F + D S + + Sbjct: 431 RSRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDIGIV 489 Query: 422 DLNGRNETLINTPAYAS-DPQWV 443 G T + Y S P+WV Sbjct: 490 SAQGGTITNLTNSGYISGSPRWV 512 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ D + + K+I N + F+ + + + + + Sbjct: 321 SVSPDGKQVAFIVRGD------VFVTSTDYATTKQITNTPAKESGVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKIARKEEANFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDRS-- 432 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 433 -RLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + +P W G +++F ++ G Sbjct: 492 QGGTITNLTNSGYISGSPRWVLDGNAILFQTERYG 526 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 84/234 (35%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPVQGGTATQLTTQAS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 +R+ + + F+ +GK L S ++Y V + TE++ Sbjct: 98 TARRLTYHSASEIPSAFTPDGKFVLFSASIQDPAQSALFPTGAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ ++ ++ + Sbjct: 158 LATPAEWV--CFDKSGKNFLYQ-DRKGFEDEWRKHHTSSITRDVWLYDASTGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +E +PV++P G+ + F ++ +G F + + QE + + Sbjct: 214 REGEDRNPVYAPDGNSVYFLSERNGGSFNVYNFALNTPQEVKAITTFRTHPVRF 267 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQVAFIVRGDVF-VTSTDYATTKQITNTPAKESGVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + ++ + +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKIARKEEANFPNATLI-------EEEVLLPSKTVERAYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D DI Sbjct: 429 -EDRSRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDI 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q LTN+ +I+ S + D + I+F+++R G Sbjct: 487 GIVSAQGGTITNLTNSGYISGSPRWVLDGNAILFQTERYG 526 >gi|194367095|ref|YP_002029705.1| transcriptional regulator domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194349899|gb|ACF53022.1| transcriptional regulator domain protein [Stenotrophomonas maltophilia R551-3] Length = 774 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 114/321 (35%), Gaps = 23/321 (7%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 D I + ++PA + + D + S + + I F S G Sbjct: 242 DGAGGGAIKVQTSGNAPARQLALPPKGASDRFPSWSPDG----REIAFARFSADGG---C 294 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G +R T L ++P+ + + + + R + + Sbjct: 295 QVLIASATGGVVRQATRCDGTELLSFDWTPDGRGLVFGSMVGRYAHRGIRVLDLASGQWR 354 Query: 252 RIG---NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + APR+S +GK + V+ + D++ + A E+LTN + Sbjct: 355 ALAYEVDQDDFDYAPRYSPDGKWLVF-VRNPQMGDLWRMPAGGGALEQLTNESAEQRGWA 413 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + D IVF + + +LY + +++ + P S GD++AF Sbjct: 414 WLGDGRSIVFGRRVDSEVRLYYLDV---ERRTLRDAGLDDAQWPTVSRHGDVLAFVHRR- 469 Query: 369 EKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 +F + M G ERL P +P GR L+F+ + G L+ D+ R Sbjct: 470 AQFGVFRMPMAGGGAERLFASSGRDGQPMAAPDGRQLVFTSDRSGSFA--LWWADMQ-RP 526 Query: 428 ETLINTPAYASD----PQWVG 444 ++L + P W Sbjct: 527 DSLRPIEGLRPEGRQAPDWSA 547 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 90/252 (35%), Gaps = 17/252 (6%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDDEDILRVYLMDTRIDRAPKRIGNFR-- 257 L + P SP+ +VAY +D + T + +++ Sbjct: 209 QRPYRLITATSGFETYPTLSPDGSQVAYEGANEDGAGGGAIKVQTSGNAPARQLALPPKG 268 Query: 258 SMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQ 315 + P +S +G+ + D + + T +S ++PD Sbjct: 269 ASDRFPSWSPDGREIAFARFSADGGCQVLIASATGGVVRQATRCDGTELLSFDWTPDGRG 328 Query: 316 IVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKF 371 +VF S R + V+ + ++ + + FD P +SP G + F + + + Sbjct: 329 LVFGSMVGRYAHRGIRVLDLASGQWRALAYEVDQDDFDYAPRYSPDGKWLVFVR-NPQMG 387 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + M G L +S Q W GRS++F R+ D + +LY +D+ E Sbjct: 388 DLWRMPAGGGALEQLTNESAEQRGWAWLGDGRSIVFGRRVDSEV--RLYYLDV----ERR 441 Query: 431 INTPAYASDPQW 442 A D QW Sbjct: 442 TLRDAGLDDAQW 453 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 16/211 (7%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA---TERLTNTL-- 301 R + I P S +G + ++ ++ +Q++ +L Sbjct: 209 QRPYRLITATSGFETYPTLSPDGSQVAYEGANEDGAGGGAIKVQTSGNAPARQLALPPKG 268 Query: 302 FINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + S+SPD +I F +G Q+ + + G ++ ++ W+P G Sbjct: 269 ASDRFPSWSPDGREIAFARFSADGGCQVLIASATGGVVRQATRCDGTELLSFDWTPDGRG 328 Query: 361 IAFTKFSGEKFA--IGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRKKDGDT 414 + F G I V+ Q R L +D AP +SP G+ L+F R Sbjct: 329 LVFGSMVGRYAHRGIRVLDLASGQWRALAYEVDQDDFDYAPRYSPDGKWLVFVRN---PQ 385 Query: 415 GSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 L+ + G E L N A W+G Sbjct: 386 MGDLWRMPAGGGALEQLTNESAEQRGWAWLG 416 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 17/169 (10%) Query: 295 ERLTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRIS-QDKEASYF 350 +T T + SPD SQ+ +E D G + V S + ++++ K AS Sbjct: 213 RLITATSGFETYPTLSPDGSQVAYEGANEDGAGGGAIKVQTSGNAPARQLALPPKGASDR 272 Query: 351 DPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFS 407 P WSP G IAF +FS + + G R + + L + W+P GR L+F Sbjct: 273 FPSWSPDGREIAFARFSADGGCQVLIASATGGVVRQATRCDGTELLSFDWTPDGRGLVFG 332 Query: 408 RKKDGDTGSKLYSIDLNGRNETLIN----------TPAYASDPQWVGFM 446 + +DL + P Y+ D +W+ F+ Sbjct: 333 SMVGRYAHRGIRVLDLASGQWRALAYEVDQDDFDYAPRYSPDGKWLVFV 381 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 59/373 (15%), Positives = 114/373 (30%), Gaps = 86/373 (23%) Query: 102 DWNSLGAQVLVTGRVIKEGKDRLRVE-FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISD 160 DW G + LV G ++ R R+ D+ + WR +A+ + Sbjct: 321 DWTPDG-RGLVFGSMV----GRYAHRGIRVLDLASGQ-------------WRALAYEVDQ 362 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D + D ++FV + L M G + LT + + Sbjct: 363 DDFDYAPRYSPDGK-WLVFVRNPQMGD-----LWRMPAGGGALEQLTNESAEQRGW-AWL 415 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALISVQK 278 + + + + D ++ YL +R + A P S +G ++ Sbjct: 416 GDGRSIVFGRRVDSEVRLYYL------DVERRTLRDAGLDDAQWPTVSRHGDVLAFVHRR 469 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + ++ + + ERL + + +PD Q+VF SDR G L+ D Sbjct: 470 AQFG-VFRMPMAGGGAERLFASSGRDGQPMAAPDGRQLVFTSDRSGSFALWWADMQRPDS 528 Query: 339 KR-ISQDKEASYFDPVWSPQ---------------------------------------- 357 R I + P WS Sbjct: 529 LRPIEGLRPEGRQAPDWSADSRQLLVVGRDEHGRTVVYEIAPRDERLQPLPVPVEQPLQA 588 Query: 358 ------GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 G L+ + + ++ + + + + R L + + G ++F+R Sbjct: 589 LYGATPGQLLVVERDAEQRTRLSLFDRSVTPWRRLASIDGVSQARFDRGGGRVLFTRLAS 648 Query: 412 GDTGSKLYSIDLN 424 G L+S+D + Sbjct: 649 GG----LWSVDAS 657 Score = 37.3 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 60/155 (38%), Gaps = 5/155 (3%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 +R + R + P +S + +++ D+ VY + R +R + A Sbjct: 529 LRPIEGLRPEGRQAPDWSADSRQLLVVGRDEHGRTVVYEIAPRDERLQPLPVPVEQPLQA 588 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 ++ G+ ++ ++ + D RL + + A + +++F Sbjct: 589 LYGATPGQLLVVERDAEQRTRLSLFDRSVTPWRRLASIDGV-SQARFDRGGGRVLFTRLA 647 Query: 323 EGKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWS 355 G L+ + ++ S +++S+D+ + + W+ Sbjct: 648 SGG--LWSVDASLSPASVQQVSEDRPSRWRYRTWT 680 >gi|253572275|ref|ZP_04849678.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838050|gb|EES66138.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 877 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +GK + + D IY V +Q +LT Sbjct: 11 VLTALSSYAITPLWMRDARISPDGKEIVFCYKGD----IYKVPVQGGTATQLTTQASYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGTARRLTY-HSASEIPSAFTPDGKFVLFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + SG++ ++ +K Sbjct: 126 SIQDPAQSALFPTGAMTELYKVPVTGGRTEQVLATP-AEWVCFDKSGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L N +P + Sbjct: 185 EWRKHHTSSITRDVWLYDASTGKHTNLTNREGEDRNPVYAP 225 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 79/226 (34%), Gaps = 33/226 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ +++ + DI +V + ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGKEIVFCY--KGDIYKVPVQ----GGTATQLTTQASYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + RLT I ++++PD ++F + Sbjct: 78 AFASDRNGNFDLFIMPADGGTARRLTYHSASEIPSAFTPDGKFVLFSASIQDPAQSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + S G + S Sbjct: 138 TGAMTELYKVPVTGGRTEQVL-ATPAEWVCFDKS--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDT 414 + + + L + + P ++P G S+ F +++G + Sbjct: 195 TRDVWLYDASTGKHTNLTNREGEDRNPVYAPDGNSVYFLSERNGGS 240 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 103/323 (31%), Gaps = 82/323 (25%) Query: 195 VMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V D + ++ +R+ P ++P+ V + + + VY + K I Sbjct: 198 VWLYDASTGKHTNLTNREGEDRNPVYAPDGNSVYFLSERNGGSFNVYNFALNTPQEVKAI 257 Query: 254 GNFRSM-----------------------------------------------------I 260 FR+ Sbjct: 258 TTFRTHPVRFLSISDKGTLCYTYDGELYTQEPNARPKKVNVDLVRDDEKEIATLRFSQGA 317 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + S +GK+ V+ D ++ T+++TNT S++PD+ +V+ S Sbjct: 318 TSASVSPDGKQVAFIVRGD----VFVTSTDYATTKQITNTPAKEAGVSFAPDNRTLVYAS 373 Query: 321 DREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R G QLY + +++ + K P +SP G +AF + Sbjct: 374 ERTGNWQLYTAKIARKEEANFPNATLIEEEVLLPSKTIERAYPQYSPDGKELAFIEDRN- 432 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSI 421 + V+ + R + + S WSP G+ L F + D S + + Sbjct: 433 --RLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDIGIV 489 Query: 422 DLNGRNETLINTPAYAS-DPQWV 443 G T + Y S P+WV Sbjct: 490 SAQGGTITNLTNSGYISGSPRWV 512 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ D + + K+I N + F+ + + + + + Sbjct: 321 SVSPDGKQVAFIVRGD------VFVTSTDYATTKQITNTPAKEAGVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKIARKEEANFPNATLIEEEVLLPSKTIERAYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + +P W G +++F ++ G Sbjct: 492 QGGTITNLTNSGYISGSPRWVLDGNAILFQTERYG 526 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPVQGGTATQLTTQAS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 +R+ + + F+ +GK L S ++Y V + TE++ Sbjct: 98 TARRLTYHSASEIPSAFTPDGKFVLFSASIQDPAQSALFPTGAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ ++ ++ + Sbjct: 158 LATPAEWV--CFDKSGKNFLYQ-DRKGFEDEWRKHHTSSITRDVWLYDASTGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +E +PV++P G+ + F ++ +G F + + QE + + Sbjct: 214 REGEDRNPVYAPDGNSVYFLSERNGGSFNVYNFALNTPQEVKAITTFRTHPVRF 267 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 13/127 (10%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-----SMI 260 L PS+ P++SP+ +++A+ ED R+ +++ + + +++ + Sbjct: 405 LLPSKTIERAYPQYSPDGKELAFI----EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGG 459 Query: 261 LAPRFSSNGKRA---LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 +S +GK I + D DI V Q LTN+ +I+ S + D + I+ Sbjct: 460 FDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSAQGGTITNLTNSGYISGSPRWVLDGNAIL 519 Query: 318 FESDREG 324 F+++R G Sbjct: 520 FQTERYG 526 >gi|218921788|emb|CAW30775.1| P46GA2.1B [Haemonchus contortus] Length = 354 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 36/246 (14%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + P+ IL+ F + A+ + D DI +V +D ++ + Sbjct: 76 FFYPNSVDILYSGNFHKVRSGHAWDVFPDYDIFKVNEYGNVLD----QLTKNKVYDSEAF 131 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-- 322 S +GK+ + + ++ +D++ D+ +LTNT + AS+SPD +IVF + R Sbjct: 132 ISPDGKKIVYTRKQSGDLDLWITDINGALKIQLTNTKGYDGGASFSPDGEKIVFHASRPT 191 Query: 323 ------------------EGKEQLYVMQSNG----SDQKRISQD--KEASYFDPVWSPQG 358 K +LYVM++N +RI + + A + P + P Sbjct: 192 TKDKIDIYDHLLKNDLVATNKMELYVMKANTVCGDGTGERILFNRARGALDWTPYYHPDN 251 Query: 359 DLIAFTKFSG----EKFAIGVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 I F+ ++ + ++ +DG+ ER+ A P +S G+ +++S + Sbjct: 252 KRIIFSSNMNSTKSNEYHLYIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNRGS 311 Query: 413 DTGSKL 418 L Sbjct: 312 TKEGDL 317 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 35/175 (20%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD--EDILRVYLMDTR---- 245 L + D +GA ++ + FSP+ +K+ + +D + +Y + Sbjct: 150 DLWITDINGA-LKIQLTNTKGYDGGASFSPDGEKIVFHASRPTTKDKIDIYDHLLKNDLV 208 Query: 246 ----------------IDRAPKRIGNFR---SMILAPRFSSNGKRALISVQ----KDEAM 282 D +RI R ++ P + + KR + S K Sbjct: 209 ATNKMELYVMKANTVCGDGTGERILFNRARGALDWTPYYHPDNKRIIFSSNMNSTKSNEY 268 Query: 283 DIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESDRE----GKEQLYVMQ 332 +Y V+ ER+T N +S D ++V+ S+R G L++ Sbjct: 269 HLYIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNRGSTKEGDLNLFIAD 323 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 19/169 (11%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKE--QLYVMQSNGSDQKRIS-QDKEAS 348 +LT N A ++ D + +VF++ G + Q+Y ++ + + + Sbjct: 13 KNVRQLTF-EHRNTEAYFNSDDTYLVFQATGYGVDCEQIYRLELSRPVETLAKISTGIGT 71 Query: 349 YFDPVWSPQGDLIAFTKFSGE-----------KFAIGVMKKDGSQERLLVEDSNLQAPTW 397 + P I ++ + + I + + G+ L ++ + + Sbjct: 72 SAATFFYPNSVDILYSGNFHKVRSGHAWDVFPDYDIFKVNEYGNVLDQLTKNKVYDSEAF 131 Query: 398 -SPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 SP G+ ++++RK+ GD L+ D+NG L NT Y + Sbjct: 132 ISPDGKKIVYTRKQSGD--LDLWITDINGALKIQLTNTKGYDGGASFSP 178 Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 N RI+F S + + L +++ DG + +T P FS + +KV +++ Sbjct: 251 NKRIIFSSNMNSTKSNEYHLYIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNR 309 >gi|220931667|ref|YP_002508575.1| WD40 domain protein beta Propeller [Halothermothrix orenii H 168] gi|219992977|gb|ACL69580.1| WD40 domain protein beta Propeller [Halothermothrix orenii H 168] Length = 918 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 121/311 (38%), Gaps = 33/311 (10%) Query: 140 IGKKFFSSPASWRKIAHTIS-------DDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 I K++ +I+H + + + + G + D + + + + Sbjct: 232 IAKEY--GEDKLVEISHKFCEEPQEGINKVIEKVLGIEVDELYKSWKFEQKRKAIELNER 289 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPK 251 + + +G P SP+ +KVAY Y ++ +R+ D R + Sbjct: 290 I---ETEGRTEITRLTEHGYFTLNPSVSPDGKKVAYYHYYNKFSAIRILTEDGRDYQLVP 346 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQK-----DEAMDIYSVDLQSNATERLTNTLFINIS 306 I + I +S +GK+ + + Q D+Y D ++ RLT Sbjct: 347 AISSSDGNI---TWSPDGKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRG-----E 398 Query: 307 ASYSP---DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-VWSPQGDLIA 362 +Y+P D++ I++ + +G + + I + + F SP G+ Sbjct: 399 RAYAPVFKDNNTIIYLTQDKGITSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAV 458 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + K + + + + L++D++++ P WSP G+ ++FS ++G LY++ Sbjct: 459 LSVMYNSKKDLYLYSFEDKVLKPLIDDNHIEVFPVWSPDGKYVVFSSDRNGRF--NLYAL 516 Query: 422 DLNGRNETLIN 432 D+ +N I Sbjct: 517 DMVTKNLYRIT 527 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 11/217 (5%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + L ++ V + N + D R + +R + + P F + + Y T D Sbjct: 360 DGKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRGERAYAPVF-KDNNTIIYLTQD- 417 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + I + +D + + + S + S +G +A++SV + D+Y + Sbjct: 418 KGITSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDK 477 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + L + I + +SPD +VF SDR G+ LY + + RI+ + F Sbjct: 478 VLKPLIDDNHIEVFPVWSPDGKYVVFSSDRNGRFNLYALDMVTKNLYRIT-----NLFTG 532 Query: 353 VWSP---QGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + P D I F +S + + + ++ D + + + Sbjct: 533 AFKPSFRNKDEIVFVGYSLDGYDLYSVRLDRVEWKRV 569 >gi|294627159|ref|ZP_06705747.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598592|gb|EFF42741.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 779 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 13/232 (5%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + Sbjct: 216 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPGPGVS 275 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G++ S Q D + + A R + +S S+SPD + Sbjct: 276 DRLPAWSPDGRQIAFSRQAPDGSCWVMIAAATGPAASREVVRCDGADMLSFSWSPDGRAL 335 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G ++ + + + +A FD P +SP G+ I F + + + Sbjct: 336 VFGSMTGTHGAARMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLR-NPQLGD 394 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +G ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 395 LWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 444 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 99/315 (31%), Gaps = 56/315 (17%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S+ V D A R L TP P +SP+ +++A++ + V + Sbjct: 244 SLTRDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQIAFSRQAPDGSCWVMI 303 Query: 242 MDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERL- 297 A + + + + +S +G+ + A + +DL + + L Sbjct: 304 AAATGPAASREVVRCDGADMLSFSWSPDGRALVFGSMTGTHGAARMRRLDLATRQWQALD 363 Query: 298 --TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + + YSPD + IVF + + L+ + + G +R++ D A W Sbjct: 364 YPAQAGDFDYAPRYSPDGNWIVFLRNPQ-LGDLWRIPAEGGVAERLTHD-NADIRGWSWL 421 Query: 356 PQGDLIAFTKFSGEKFAIGVMKK------------------------------------- 378 P G + F + + + + Sbjct: 422 PDGSGLIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQV 481 Query: 379 -----DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 +G + RL P +P GR LIF+ + G G + G LI Sbjct: 482 IGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYGLWWGDVSKPGS-VRLI 540 Query: 432 NT--PAYASDPQWVG 444 P W Sbjct: 541 EGLRPDSRQAGDWSA 555 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD + + + S DR G L N + + Sbjct: 212 GSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPG 271 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS----QERLLVEDSNLQAPTWSPS 400 S P WSP G IAF++ + + ++ +E + + +++ + +WSP Sbjct: 272 PGVSDRLPAWSPDGRQIAFSRQAPDGSCWVMIAAATGPAASREVVRCDGADMLSFSWSPD 331 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA----------YASDPQWVGFM 446 GR+L+F +++ +DL R ++ PA Y+ D W+ F+ Sbjct: 332 GRALVFGSMTGTHGAARMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFL 387 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 76/256 (29%), Gaps = 52/256 (20%) Query: 213 ILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+SP+ + + D+ R+ +R+ + + I + +G Sbjct: 371 FDYAPRYSPDGNWIVFLRNPQLGDLWRI----PAEGGVAERLTHDNADIRGWSWLPDGSG 426 Query: 272 ALISVQKDEAMDIYSVDLQ----------------------------------------- 290 + + D +Y +DL+ Sbjct: 427 LIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTM 486 Query: 291 --SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEA 347 RL + + +PD Q++F S+R G L+ + R+ + + Sbjct: 487 NGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYGLWWGDVSKPGSVRLIEGLRPD 546 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSL 404 S WS + + +A V G RL V P R L Sbjct: 547 SRQAGDWSADSQRVLVSGSDAAGYAALFEVTPGSGQVVRLPVPQPRPLQAIHLPDPDRLL 606 Query: 405 IFSRKKDGDTGSKLYS 420 + + DG T + LY Sbjct: 607 VLAAADDGHTFATLYD 622 >gi|294673806|ref|YP_003574422.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] gi|294473896|gb|ADE83285.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] Length = 1071 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 30/199 (15%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK + + D +Y+V +LT + +SPD +++ F S RE Sbjct: 32 AISPDGKTIAFAYKGD----VYTVAASGGKARQLTTNAAYDACPVWSPDGTKLAFASSRE 87 Query: 324 GKEQLYVMQSNGSDQKRIS-----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +YVM + GS+ R++ + E F W P I F + Sbjct: 88 GSMDVYVMDAQGSEPVRLTTNSTDEMPMVWRGNEHVLFSASWMPSAQSILF----PGENQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDL 423 + + G + R+ ++ +++ GR L F + ++ + Sbjct: 144 VYEVSIKGGRPRMFSTLP-MEDISFAKDGRILYHDYKGYEDPFRKHHQSPICRDIWMM-Q 201 Query: 424 NGRNETLINTPAYASDPQW 442 +G L + P+W Sbjct: 202 DGHYTRLTDFKGEDRTPRW 220 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y + E G FN ++ +G + S M+ +RYL+ S + L +S N Sbjct: 226 YYYTSEEDGTFN---VYRRNIDGTGKKQLSHHTMNP----VRYLSVSNEGTLC---YSQN 275 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + ++V + R D+ R + S GK ++ D Sbjct: 276 GEIYTLKEGSEPQKVKVTITGDRQDKDLIRQLRSSG-VTEISLSPEGKEVAFILRGD--- 331 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 I+ ++ T+++TNT S ++SPD +V+ ++R G Q+Y + ++K Sbjct: 332 -IFVTSVEYKTTKQITNTPQQERSVNFSPDGRSLVYCAERGGVWQIYQTKLKNKNEKLFT 390 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 R++Q E S P +SP G +A+ K + V+ ER +++ Sbjct: 391 YATSLQEERLTQSNETSL-QPQYSPDGKEVAYFKNRA---ELCVINLKTGLERTVLDGKY 446 Query: 392 LQAPT-------WSPSGRSLIFSRKKDGDTGSK-LYSIDLNGRNETLINTPAYASDPQ-- 441 + + WSP + L+ S G S + I+ +G +E T + ++ Sbjct: 447 NYSYSDGDIWFEWSPDSKWLLASYIGTGGWNSNDIALINASGNSEVHNLTESGYNEGAAR 506 Query: 442 WV 443 WV Sbjct: 507 WV 508 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 40/235 (17%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + +A+A D+ V +++ + P +S +G + + Sbjct: 32 AISPDGKTIAFAY--KGDVYTV----AASGGKARQLTTNAAYDACPVWSPDGTKLAFASS 85 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINI------------SASYSPDSSQIVFESDREGK 325 ++ +MD+Y +D Q + RLT + SAS+ P + I+F G+ Sbjct: 86 REGSMDVYVMDAQGSEPVRLTTNSTDEMPMVWRGNEHVLFSASWMPSAQSILF----PGE 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFA----------I 373 Q+Y + G + S D ++ G I + + G + F I Sbjct: 142 NQVYEVSIKGGRPRMFSTLP---MEDISFAKDGR-ILYHDYKGYEDPFRKHHQSPICRDI 197 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 +M+ DG RL + P W+ S ++ ++DG +ID G+ + Sbjct: 198 WMMQ-DGHYTRLTDFKGEDRTPRWA-DANSYYYTSEEDGTFNVYRRNIDGTGKKQ 250 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 55/393 (13%), Positives = 115/393 (29%), Gaps = 131/393 (33%) Query: 165 SITGEKGDFNSRILFVSESVVS--GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 S+ E+G R +S + K + + G R LT + P +SP+ Sbjct: 18 SVHAEEGPLWMRYTAISPDGKTIAFAYKGDVYTVAASGGKARQLTTNAAYDAC-PVWSPD 76 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN--------FRSMI---LAPRFSSNGKR 271 K+A+A+ + + VY+MD + + N +R + + + + Sbjct: 77 GTKLAFASSREGS-MDVYVMDAQGSEPVRLTTNSTDEMPMVWRGNEHVLFSASWMPSAQS 135 Query: 272 ALISVQKDEAMDIYSVDLQSNATE------------------------------------ 295 L +Y V ++ Sbjct: 136 ILF----PGENQVYEVSIKGGRPRMFSTLPMEDISFAKDGRILYHDYKGYEDPFRKHHQS 191 Query: 296 ---------------RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 RLT+ + + ++ D++ + S+ +G +Y +G+ +K+ Sbjct: 192 PICRDIWMMQDGHYTRLTDFKGEDRTPRWA-DANSYYYTSEEDGTFNVYRRNIDGTGKKQ 250 Query: 341 IS-----------------------------------------------------QDKEA 347 +S Q + + Sbjct: 251 LSHHTMNPVRYLSVSNEGTLCYSQNGEIYTLKEGSEPQKVKVTITGDRQDKDLIRQLRSS 310 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIF 406 + SP+G +AF I V + + + + + +SP GRSL++ Sbjct: 311 GVTEISLSPEGKEVAFILRGD----IFVTSVEYKTTKQITNTPQQERSVNFSPDGRSLVY 366 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 ++ G ++Y L +NE L + Sbjct: 367 CAERGG--VWQIYQTKLKNKNEKLFTYATSLQE 397 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 13/127 (10%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG-----NFRSMIL 261 ++ +P++SP+ ++VAY ++ + +++ + + ++ + Sbjct: 400 LTQSNETSLQPQYSPDGKEVAY----FKNRAELCVINLKTGLERTVLDGKYNYSYSDGDI 455 Query: 262 APRFSSNGKRALISVQKDEAM---DIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIV 317 +S + K L S DI ++ N+ LT + + +A + ++ Sbjct: 456 WFEWSPDSKWLLASYIGTGGWNSNDIALINASGNSEVHNLTESGYNEGAARWVLGGKAML 515 Query: 318 FESDREG 324 FESDR G Sbjct: 516 FESDRAG 522 >gi|75908403|ref|YP_322699.1| peptidase C14 [Anabaena variabilis ATCC 29413] gi|75702128|gb|ABA21804.1| Peptidase C14, caspase catalytic subunit p20 [Anabaena variabilis ATCC 29413] Length = 1240 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 138/367 (37%), Gaps = 47/367 (12%) Query: 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKE 119 +L + VV +L ++ +++ + Q + + F G+ I Sbjct: 795 QLPANILTVVQNNLLQA--MAIVNLPNIIQGHESGVNSVAFSP----------DGQRIVS 842 Query: 120 GKDRLRVEFRLWDVKD---RKQIIG-----KKFFSSPASWR----------KIAHTISDD 161 G + RLWDV + +IG K SP R ++ + Sbjct: 843 GSGDKTL--RLWDVNGQPIGQPLIGHEGAVKSVAFSPDGQRIVSGSGDKTLRLWNVNGQP 900 Query: 162 IYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 I Q + G +G+ S + +VSG N+L + + +G I + + FS Sbjct: 901 IGQPLIGHEGEVKSVAFSPDGQRIVSGSWDNTLRLWNVNGQPIGQPLIGHEGAVNSVAFS 960 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ Q + ++D+ + L D + + S + + FS +G+R + S D Sbjct: 961 PDGQCIVSGSWDN----TLRLWDVNGQPIGQPLIGHESGVYSVAFSPDGQRIV-SGSGDN 1015 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + ++ V+ QS + L S ++SPD +IV S L + NG + Sbjct: 1016 TLRLWDVNGQSIG-QPLIGHESGVYSVAFSPDGQRIVSGS---WDNTLRLWDVNGQSIGQ 1071 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS--QERLLVEDSNLQAPTWS 398 E+ + +SP G I + + + +G + L+ + + + +S Sbjct: 1072 PLIGHESGVYSVAFSPDGQRIVSGSWDNT---LRLWDVNGQPIGQPLMGHKAAVISVAFS 1128 Query: 399 PSGRSLI 405 P G+ ++ Sbjct: 1129 PDGQRIV 1135 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 24/190 (12%) Query: 121 KDRLRVEFRLWDVKD---RKQIIGK-----KFFSSPASWRKIA------HTISDDIYQSI 166 RLWDV + +IG SP R ++ + D QSI Sbjct: 968 SGSWDNTLRLWDVNGQPIGQPLIGHESGVYSVAFSPDGQRIVSGSGDNTLRLWDVNGQSI 1027 Query: 167 TGEKGDFNSRILFVS-----ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 S + V+ + +VSG N+L + D +G +I + ++ FSP Sbjct: 1028 GQPLIGHESGVYSVAFSPDGQRIVSGSWDNTLRLWDVNGQSIGQPLIGHESGVYSVAFSP 1087 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + Q++ ++D+ + L D + + ++ +++ FS +G+R + S D Sbjct: 1088 DGQRIVSGSWDN----TLRLWDVNGQPIGQPLMGHKAAVISVAFSPDGQRIV-SGSADNK 1142 Query: 282 MDIYSVDLQS 291 + ++ QS Sbjct: 1143 LKLWRGSWQS 1152 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 23/138 (16%) Query: 116 VIKEGKDRLRVEFRLWDVKD---RKQIIGK-----KFFSSPASWRKIAHTISDDIY---- 163 V G + L RLWDV + +IG SP R ++ + + + Sbjct: 1009 VSGSGDNTL----RLWDVNGQSIGQPLIGHESGVYSVAFSPDGQRIVSGSWDNTLRLWDV 1064 Query: 164 -------QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 I E G ++ + +VSG N+L + D +G I + Sbjct: 1065 NGQSIGQPLIGHESGVYSVAFSPDGQRIVSGSWDNTLRLWDVNGQPIGQPLMGHKAAVIS 1124 Query: 217 PRFSPNQQKVAYATYDDE 234 FSP+ Q++ + D++ Sbjct: 1125 VAFSPDGQRIVSGSADNK 1142 >gi|116619729|ref|YP_821885.1| WD40 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222891|gb|ABJ81600.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus Ellin6076] Length = 335 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 100/282 (35%), Gaps = 53/282 (18%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD--- 232 R++F + + + +M+ DG++ + + + F + + + Y + Sbjct: 45 RLIFQTTRPP--YDCDQIFLMNADGSDQHLASTGKGRTTCG-YFLADGKHIVYGSTHLAG 101 Query: 233 -----DEDILRVYLMDT----------RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 D + Y+ I KR+ N + + + Sbjct: 102 DACPVSPDRSKGYVWGVFAGYDIFEANDIGEIEKRLTNTPGYDAEATVNWKTNNIVYTSV 161 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE----------- 326 +D++++ +A +++T + A +S D Q+V+ R G Sbjct: 162 ASGDLDLWTMKPDGSAKKQITKNPGYDGGAVFSRDGKQLVW---RAGYPKNDADMKRYKE 218 Query: 327 ------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEK 370 +L V ++G+ ++I+ AS F P ++P G I F K Sbjct: 219 LLAENLTAPMKMELMVSNADGTSARQITNFGCAS-FAPTFAPDGKKILFASNKAECDSRK 277 Query: 371 FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD 411 F + ++ DG+ + P +SP G++L+F KD Sbjct: 278 FELYLINVDGTGLEQVTNFGGFTSFPEFSPDGKTLVFCTDKD 319 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 45/270 (16%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-- 276 +SP+ +++ + T + + F ++GK + Sbjct: 39 WSPDGKRLIFQTTRPPYDCDQIFLMNADGSDQHLASTGKGRTTCGYFLADGKHIVYGSTH 98 Query: 277 --------QKDE----------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 D DI+ + +RLTNT + A+ + ++ IV+ Sbjct: 99 LAGDACPVSPDRSKGYVWGVFAGYDIFEANDIGEIEKRLTNTPGYDAEATVNWKTNNIVY 158 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------------- 365 S G L+ M+ +GS +K+I+++ V+S G + + Sbjct: 159 TSVASGDLDLWTMKPDGSAKKQITKN-PGYDGGAVFSRDGKQLVWRAGYPKNDADMKRYK 217 Query: 366 -------FSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKD--GDTG 415 + K + V DG+ R + APT++P G+ ++F+ K Sbjct: 218 ELLAENLTAPMKMELMVSNADGTSARQITNFGCASFAPTFAPDGKKILFASNKAECDSRK 277 Query: 416 SKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 +LY I+++G E + N + S P++ Sbjct: 278 FELYLINVDGTGLEQVTNFGGFTSFPEFSP 307 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 31/196 (15%) Query: 161 DIYQSITGEKGDFNSRIL------FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 +I + +T G + V SV SG + L M DG+ + +T Sbjct: 132 EIEKRLTNTPGYDAEATVNWKTNNIVYTSVASGDL--DLWTMKPDGSAKKQITK-NPGYD 188 Query: 215 FEPRFSPNQQKVAYATYDDEDILRV------------------YLMDTRIDRAPKRIGNF 256 FS + +++ + ++ + ++ + ++I NF Sbjct: 189 GGAVFSRDGKQLVWRAGYPKNDADMKRYKELLAENLTAPMKMELMVSNADGTSARQITNF 248 Query: 257 RSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 AP F+ +GK+ L + K ++Y +++ E++TN +SPD Sbjct: 249 GCASFAPTFAPDGKKILFASNKAECDSRKFELYLINVDGTGLEQVTNFGGFTSFPEFSPD 308 Query: 313 SSQIVFESDREGKEQL 328 +VF +D++ KE+ Sbjct: 309 GKTLVFCTDKDAKERY 324 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 49/239 (20%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINISASYSPD 312 +S +GKR + + I+ ++ + + + D Sbjct: 29 THGGQNAEAYWSPDGKRLIFQTTRPPYDCDQIFLMNADGSDQHLASTGKGRTTCGYFLAD 88 Query: 313 SSQIVFES------------DRE--------GKEQLYVMQSNGSDQKRISQDKEASYFDP 352 IV+ S DR ++ G +KR++ + + Sbjct: 89 GKHIVYGSTHLAGDACPVSPDRSKGYVWGVFAGYDIFEANDIGEIEKRLT-NTPGYDAEA 147 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKD 411 + + + I +T + + MK DGS ++ + +S G+ L++ Sbjct: 148 TVNWKTNNIVYTSVASGDLDLWTMKPDGSAKKQITKNPGYDGGAVFSRDGKQLVWRAGYP 207 Query: 412 GDTGS------------------KLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 + +L + +G + I P +A D + + F Sbjct: 208 KNDADMKRYKELLAENLTAPMKMELMVSNADGTSARQITNFGCASFAPTFAPDGKKILF 266 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 32/170 (18%) Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDP 352 ++LT+ N A +SPD +++F++ R +Q+++M ++GSD + ++ + Sbjct: 26 KQLTHG-GQNAEAYWSPDGKRLIFQTTRPPYDCDQIFLMNADGSD-QHLASTGKGRTTCG 83 Query: 353 VWSPQGDLIAF--TKFSGE------------------KFAIGVMKKDGSQERLLVEDSNL 392 + G I + T +G+ + I G E+ L Sbjct: 84 YFLADGKHIVYGSTHLAGDACPVSPDRSKGYVWGVFAGYDIFEANDIGEIEKRLTNTPGY 143 Query: 393 QAPT---WSPSGRSLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYAS 438 A W + ++++ GD L+++ +G + + P Y Sbjct: 144 DAEATVNWKTNN--IVYTSVASGD--LDLWTMKPDGSAKKQITKNPGYDG 189 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 S + L WSP G+ LIF + +++ ++ +G ++ L +T Sbjct: 23 SDYKQLTHGGQNAEAYWSPDGKRLIFQTTRPPYDCDQIFLMNADGSDQHLASTG 76 >gi|170693891|ref|ZP_02885048.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M] gi|170141309|gb|EDT09480.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M] Length = 642 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 44/256 (17%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD--IYSVDL 289 + + +++ FS +G+ + + ++D A +Y V + Sbjct: 45 RVGPVSSELYISNADGTGERKLIPSTGFDYHASFSKDGQWLVFTSERDGAGQSNLYRVKV 104 Query: 290 QSNATERLTNTLFINISASYSP-DSSQIVFESDREGKE-----QLYVMQSNGSDQKRIS- 342 ERLT+ + ++ +A +SP D + I F S R G + ++ + + ++ Sbjct: 105 DGTGLERLTDHIAVDDAAVFSPTDPNVIAFVSSRRGNDGFGTTNVWTLNLSTGALNNVTG 164 Query: 343 -----QDKEASYFDPVWSPQGDLIAFTKFSGEKFA---------------IGVMKKDGSQ 382 + YF P WSP G +A + +G + I +++ DGS Sbjct: 165 SLGFDPTRPHGYFRPSWSPDGKWLALSSDTGSDWRGHNLPTGWERTQESSIYIVRPDGSG 224 Query: 383 ERLL--VEDSNLQAPTWSPSGRSLIFSRK------------KDGDTGSKLYSIDLNG-RN 427 + + V + +P+WSP G+ ++F S+L S+D+ Sbjct: 225 WKKIAGVSGYDEGSPSWSPDGKRVVFYETPVESTWGAHRPESINSVSSQLVSVDITSLSR 284 Query: 428 ETLINTPAYASDPQWV 443 TL +T + PQ++ Sbjct: 285 TTLTSTAGFKVFPQYL 300 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 44/275 (16%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDT----------RIDRAPKRIGNFRSMIL 261 + P+ S ++ K+ Y + V + P I + Sbjct: 372 YLDVFPQLSRDRAKLVYTEKAINSSIAVANPNLSGYTRIYDPATSGLDPAAIAQGLAGAF 431 Query: 262 APRFSSNGKRALISV------QKDEAMDIYSVDLQS---NATERLTNTLFINISASYSPD 312 P +S + + V + I + E LT+ + SYSPD Sbjct: 432 QPAWSPDRQWVAFGVGNWFFTRSTGPAQIMRIRADGSMNGQAEALTDGSINSGFPSYSPD 491 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--- 369 ++V+ + + L ++ ++ + P WSP G I FT+ + Sbjct: 492 GKKLVYRVWSDAVQGLRILDLATRSTTVLT---SGADNLPGWSPDGSRIVFTRKQIDATN 548 Query: 370 ----KFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDG------------ 412 + + ++ DG+ RL + SN W+ GR + +S G Sbjct: 549 PNRFNYDVFTIRPDGTGLTRLTTDGSNQGHAVWTWDGR-IAYSSGTYGFRDELALYDNSF 607 Query: 413 DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGFM 446 + + ++ +G N+ I + + P ++ + Sbjct: 608 QPDGQNWVMNADGSNQRPITDTLWEEAMPLYIPTL 642 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 29/205 (14%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + + L + + DG R L PS + FS + Q + + + D Sbjct: 47 GPVSSELYISNADGTGERKLIPST-GFDYHASFSKDGQWLVFTSERDGAGQSNLYRVKVD 105 Query: 247 DRAPKRIGNFRSMILAPRFSS-NGKRALISVQKDEA-----MDIYSVDLQSNATERLTNT 300 +R+ + ++ A FS + + ++++++L + A +T + Sbjct: 106 GTGLERLTDHIAVDDAAVFSPTDPNVIAFVSSRRGNDGFGTTNVWTLNLSTGALNNVTGS 165 Query: 301 LFIN-------ISASYSPDSSQIVFESD---------------REGKEQLYVMQSNGSDQ 338 L + S+SPD + SD R + +Y+++ +GS Sbjct: 166 LGFDPTRPHGYFRPSWSPDGKWLALSSDTGSDWRGHNLPTGWERTQESSIYIVRPDGSGW 225 Query: 339 KRISQDKEASYFDPVWSPQGDLIAF 363 K+I+ P WSP G + F Sbjct: 226 KKIAGVSGYDEGSPSWSPDGKRVVF 250 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 32/195 (16%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQ 338 + ++Y + +L + + AS+S D +VF S+R+G Q LY ++ +G+ Sbjct: 50 SSELYISNADGTGERKLIPSTGFDYHASFSKDGQWLVFTSERDGAGQSNLYRVKVDGTGL 109 Query: 339 KRISQDKEASYFDPVWSP-QGDLIAFTKFSGEKF-----AIGVMKKDGSQERLLVEDSNL 392 +R++ D A V+SP ++IAF + + + Sbjct: 110 ERLT-DHIAVDDAAVFSPTDPNVIAFVSSRRGNDGFGTTNVWTLNLSTGALNNVTGSLGF 168 Query: 393 Q--------APTWSPSGRSLIFSRKKDGDT-------------GSKLYSIDLNGRNETLI 431 P+WSP G+ L S D S +Y + +G I Sbjct: 169 DPTRPHGYFRPSWSPDGKWLALSSDTGSDWRGHNLPTGWERTQESSIYIVRPDGSGWKKI 228 Query: 432 N--TPAYASDPQWVG 444 + P W Sbjct: 229 AGVSGYDEGSPSWSP 243 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 30/244 (12%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 PR+SP+ K+ Y D A K I + + P+ S + + + + Sbjct: 335 PRYSPDGTKLVYEKVAFSPARANGTPLFSFDPAWKYI----YLDVFPQLSRDRAKLVYTE 390 Query: 277 QK------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE----- 319 + IY + L ++SPD + F Sbjct: 391 KAINSSIAVANPNLSGYTRIYDPATSGLDPAAIAQGLAGAFQPAWSPDRQWVAFGVGNWF 450 Query: 320 -SDREGKEQLYVMQSNGS--DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + G Q+ ++++GS Q D + P +SP G + + +S + ++ Sbjct: 451 FTRSTGPAQIMRIRADGSMNGQAEALTDGSINSGFPSYSPDGKKLVYRVWSDAVQGLRIL 510 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK-----DGDTGSKLYSIDLNGRNETLI 431 +L ++ P WSP G ++F+RK+ +++I +G T + Sbjct: 511 DLATRSTTVLTSGAD-NLPGWSPDGSRIVFTRKQIDATNPNRFNYDVFTIRPDGTGLTRL 569 Query: 432 NTPA 435 T Sbjct: 570 TTDG 573 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 113/346 (32%), Gaps = 92/346 (26%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + ++S+ ++ DG+ + + P +SP+ ++V + E + Sbjct: 204 PTGWERTQESSIYIVRPDGSGWKKIAGVSGYDEGSPSWSPDGKRVVFYETPVESTWGAHR 263 Query: 242 MDTRIDRAPKRI------------------------------------------------ 253 ++ + + + Sbjct: 264 PESINSVSSQLVSVDITSLSRTTLTSTAGFKVFPQYLNAATVAYHVKGGSTEGLYTTAGT 323 Query: 254 --GNFRSMILAPRFSSNGKRA-----LISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + I +PR+S +G + S + ++S D +++++ Sbjct: 324 FHSTANTGIRSPRYSPDGTKLVYEKVAFSPARANGTPLFSFDPAWK-------YIYLDVF 376 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD------------KEASYFDPVW 354 S D +++V+ ++ + V N S RI A F P W Sbjct: 377 PQLSRDRAKLVYT-EKAINSSIAVANPNLSGYTRIYDPATSGLDPAAIAQGLAGAFQPAW 435 Query: 355 SPQGDLIAFT------KFSGEKFAIGVMKKDG---SQERLLVEDS-NLQAPTWSPSGRSL 404 SP +AF S I ++ DG Q L + S N P++SP G+ L Sbjct: 436 SPDRQWVAFGVGNWFFTRSTGPAQIMRIRADGSMNGQAEALTDGSINSGFPSYSPDGKKL 495 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINT-----PAYASDPQWVGF 445 ++ D G ++ +DL R+ T++ + P ++ D + F Sbjct: 496 VYRVWSDAVQGLRI--LDLATRSTTVLTSGADNLPGWSPDGSRIVF 539 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGD 413 +P+G L + + + DG+ ER L+ ++S G+ L+F+ ++DG Sbjct: 36 APKGTLFL-NRVGPVSSELYISNADGTGERKLIPSTGFDYHASFSKDGQWLVFTSERDGA 94 Query: 414 TGSKLYSIDLNGRNETLIN 432 S LY + ++G + Sbjct: 95 GQSNLYRVKVDGTGLERLT 113 >gi|21229189|ref|NP_635111.1| hypothetical protein MM_3087 [Methanosarcina mazei Go1] gi|20907756|gb|AAM32783.1| hypothetical protein MM_3087 [Methanosarcina mazei Go1] Length = 413 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 95/245 (38%), Gaps = 6/245 (2%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + P +S + + + Y + + + Y M + ++ Sbjct: 43 TFLTDSPEKELSPVWSADGEYIFYTVEGNGSNDFKSYRMKANGSEIKRTGIGEGNLTGFS 102 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESDR 322 S +G+ +I +D+Y +L++ + + I S+ +I + + Sbjct: 103 DLSLDGRDLVIIKSMGSQLDLYLANLENGTVTPVASDSQISEGWGSWCRFGKKITYTQES 162 Query: 323 EG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDG 380 G QL+++ +G+++ R+ + W P G + ++ K+ + V+ G Sbjct: 163 AGMPPQLWIIDRDGNNRARLGTSENVG-TGKDWCPLGLRVIYSSKDSQGKYDLWVIDYHG 221 Query: 381 SQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + + L S N P++SP+G+ + + + G L I+ N R+ NT Y S Sbjct: 222 TNQTQLTNTSYNEWNPSFSPNGKWIAYVSDEGGSPDIWLRDIEGNYRSRLTNNTGRYDSI 281 Query: 440 PQWVG 444 P+W Sbjct: 282 PRWSP 286 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 96/270 (35%), Gaps = 17/270 (6%) Query: 159 SDDIYQSIT----------GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +DD + +T + +F + +G M +G+ I+ Sbjct: 35 ADDFVEDVTFLTDSPEKELSPVWSADGEYIFYTVEG-NGSNDFKSYRMKANGSEIKRTGI 93 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + S + + + L +YL + + + + Sbjct: 94 GEGNLTGFSDLSLDGRDLVIIK-SMGSQLDLYLANLENGTVTPVASDSQISEGWGSWCRF 152 Query: 269 GKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKE 326 GK+ + ++ +D N RL + + + P ++++ S D +GK Sbjct: 153 GKKITYTQESAGMPPQLWIIDRDGNNRARLGTSENVGTGKDWCPLGLRVIYSSKDSQGKY 212 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 L+V+ +G++Q +++ + + ++P +SP G IA+ G I + +G+ L Sbjct: 213 DLWVIDYHGTNQTQLT-NTSYNEWNPSFSPNGKWIAYVSDEGGSPDIWLRDIEGNYRSRL 271 Query: 387 V--EDSNLQAPTWSPSGRSLIFSRKKDGDT 414 P WSP G ++F G+ Sbjct: 272 TNNTGRYDSIPRWSPEGSKIMFEGYNPGNN 301 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 2/183 (1%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + + + + + + +K+ Y +++++D R Sbjct: 122 DLYLANLENGTVTPVASDSQISEGWGSWCRFGKKITYTQESAGMPPQLWIID-RDGNNRA 180 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYS 310 R+G ++ + G R + S + D++ +D +LTNT + + S+S Sbjct: 181 RLGTSENVGTGKDWCPLGLRVIYSSKDSQGKYDLWVIDYHGTNQTQLTNTSYNEWNPSFS 240 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 P+ I + SD G +++ G+ + R++ + P WSP+G I F ++ Sbjct: 241 PNGKWIAYVSDEGGSPDIWLRDIEGNYRSRLTNNTGRYDSIPRWSPEGSKIMFEGYNPGN 300 Query: 371 FAI 373 +I Sbjct: 301 NSI 303 Score = 38.8 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 I +VS+ S + + D +G LT + + PR+SP K+ + Y+ + Sbjct: 246 IAYVSDEGGSP----DIWLRDIEGNYRSRLTNNTGRYDSIPRWSPEGSKIMFEGYNPGNN 301 Query: 237 LRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGK 270 ++ P + N L ++GK Sbjct: 302 SISDIITAETINYPDSSVSNITGSNLDGSV-TDGK 335 >gi|85710926|ref|ZP_01041987.1| putative exported peptidase [Idiomarina baltica OS145] gi|85695330|gb|EAQ33267.1| putative exported peptidase [Idiomarina baltica OS145] Length = 1068 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 20/201 (9%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 R +I+ P S +G + S Q D I+++ RLT S +S D I Sbjct: 25 RPLIMQPEISPDGTQIAFSYQGD----IWTMSTSGTHPNRLTIHEGYESSPKWSKDGKTI 80 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----GEKF 371 F SDR G + ++VM S G R++ A + + + F ++ Sbjct: 81 AFSSDRFGNDDVFVMPSQGGRPDRLTY-HSAPDRVLGFGHD-NQVLFNTRRLYAEVEREW 138 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR--------KKDGDTGSKLYSIDL 423 + + G D+ SP G+ + F R G ++ D Sbjct: 139 EVYGVAPSGDATEARFMDALGFDAVVSPDGKKIAFVRGTCRISREDYRGPANRNIWIYDT 198 Query: 424 -NGRNETLINTPAYASDPQWV 443 G E L + PQW Sbjct: 199 ETGEYEQLTDFDGNDFMPQWS 219 Score = 87.4 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 26/219 (11%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN + ++Y D + R + + D+ R+ + + + + L Sbjct: 314 SVSPNGKLISYVVRGDVFVKR----NDKEDKRSVRLTSGAARDRDVAW-LDDNTVLFISD 368 Query: 278 KDEAMDIYSVDLQSNATERL-----------TNTLFINISASYSPDSSQIVFESDREGKE 326 +D DI++V + L T T SPD ++ + REG+ Sbjct: 369 RDGQNDIFAVTSADSEEPNLFRSLKHSVKPVTRTDAEEHEPLVSPDGKKVAY---REGRG 425 Query: 327 QLYVMQSNGSDQ---KRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQ 382 +L V + D A+ WSP +A+ K I + D SQ Sbjct: 426 KLIVTDVADDQSLTNPVVLLDGWATPSGVSWSPDSQWLAYAKSDLSFNSEIFIHAADNSQ 485 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 E + V +P WSP G L FS ++ + ++ Sbjct: 486 EPVNVSMHPKGDYSPAWSPDGSKLGFSSMRN-NGDYDIW 523 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 48/355 (13%), Positives = 113/355 (31%), Gaps = 98/355 (27%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E+ + + ++ + + M G + LT + P++S + + +A Sbjct: 23 PERPLIMQPEISPDGTQIAFSYQGDIWTMSTSGTHPNRLTI-HEGYESSPKWSKDGKTIA 81 Query: 228 YATYDDEDILRVYLMDTRIDRA--------PKRIGNFR---------------------- 257 +++ + V++M ++ R P R+ F Sbjct: 82 FSSDRFGN-DDVFVMPSQGGRPDRLTYHSAPDRVLGFGHDNQVLFNTRRLYAEVEREWEV 140 Query: 258 ------SMILAPRF----------SSNGKRALIS----------VQKDEAMDIYSVDLQS 291 RF S +GK+ + +I+ D ++ Sbjct: 141 YGVAPSGDATEARFMDALGFDAVVSPDGKKIAFVRGTCRISREDYRGPANRNIWIYDTET 200 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 E+LT+ + +S + +++ F S R GK ++ + + ++I+ ++E Sbjct: 201 GEYEQLTDFDGNDFMPQWSSN-NELYFISSRAGKYNVFRQKLGSNRAEQITDEREFGVEH 259 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL----------------VEDSNLQAP 395 Q + + + V GS+ + L + L Sbjct: 260 FSIDKQANHLVYQAADK------VQLIAGSKRQSLDLSIPTDFRFDPVTNKSTTNALDEY 313 Query: 396 TWSPSGRSL-------IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + SP+G+ + +F ++ D + + R+ L + A D W+ Sbjct: 314 SVSPNGKLISYVVRGDVFVKRNDKE----------DKRSVRLTSGAARDRDVAWL 358 Score = 73.9 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 94/271 (34%), Gaps = 34/271 (12%) Query: 193 LCVMDRDGANIRYLTPSRDQIL---------------------FEPRFSPNQQKVAYATY 231 L + DRDG N + S D EP SP+ +KVAY Sbjct: 364 LFISDRDGQNDIFAVTSADSEEPNLFRSLKHSVKPVTRTDAEEHEPLVSPDGKKVAY-RE 422 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS---VQKDEAMDIYSVD 288 ++ + D + P + + + +S + + + + + + I++ D Sbjct: 423 GRGKLIVTDVADDQSLTNPVVLLDGWATPSGVSWSPDSQWLAYAKSDLSFNSEIFIHAAD 482 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGKEQLYVMQSNGSDQKRISQDKEA 347 S ++ + S ++SPD S++ F S R G ++ SD +R ++ + Sbjct: 483 -NSQEPVNVSMHPKGDYSPAWSPDGSKLGFSSMRNNGDYDIWFAWLKESDWQRSQEEWKR 541 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSL 404 F + + + + + + DG ++ N + G + Sbjct: 542 DEFVEETADAKESEDDSDAAEDAVEPMQIDLDGIYKRLVQVTRFAGNESGLAFDKEGEHV 601 Query: 405 IFSRKKDGDTGSK----LYSIDLNGRNETLI 431 ++ G + L+ I NG ++ I Sbjct: 602 YYTIGGAGRQNFEMDQDLFKIKWNGEDKEHI 632 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 63/187 (33%), Gaps = 19/187 (10%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + D + + + P +SP+ K+ +++ + ++ + Sbjct: 471 SFNSEIFIHAADNSQEPVNVSMHPKGDYSPAWSPDGSKLGFSSMRNNGDYDIWFAWLKES 530 Query: 248 RAPKRIGNFRSMIL-----APRFSSNGKRALISVQKDEAMDIYSVDLQS--NATERLTNT 300 + ++ + S + A ++A++ +DL ++T Sbjct: 531 DWQRSQEEWKRDEFVEETADAKESEDDSDAA-----EDAVEPMQIDLDGIYKRLVQVTRF 585 Query: 301 LFINISASYSPDSSQIVFESDREGKEQ------LYVMQSNGSDQKRISQDKEASYFDPVW 354 ++ + + + G++ L+ ++ NG D++ I + + S Sbjct: 586 AGNESGLAFDKEGEHVYYTIGGAGRQNFEMDQDLFKIKWNGEDKEHIIK-GDQSPRSLSL 644 Query: 355 SPQGDLI 361 S G + Sbjct: 645 STDGKSL 651 >gi|302530195|ref|ZP_07282537.1| predicted protein [Streptomyces sp. AA4] gi|302439090|gb|EFL10906.1| predicted protein [Streptomyces sp. AA4] Length = 1102 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 46/215 (21%) Query: 263 PRFSSNGKRALISVQ-----KDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P S +G R V+ +D +D +++V S +LT + + +SPD S++ Sbjct: 19 PALSPDGSRIAYVVRTADREEDRNVDALWTVGASSGEARQLTRGNA-DAAPKWSPDGSRL 77 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----------- 365 F ++G Q++V+ ++G + +++++ + PVWSP G IAF+ Sbjct: 78 AFLRAQDGPPQVWVLPADGGEAEQLTKLPLGA-GAPVWSPDGSKIAFSSAIDLAAVVEAP 136 Query: 366 --------------------FSGEKFAIGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSL 404 + + V+ + + D + P WSP G + Sbjct: 137 PENTPIVAERLDYKSDGPGLLKTLRSHVHVLDVATGEVQQHTFGDWHAGQPAWSPDGTHV 196 Query: 405 IFSRKKDGDTG----SKLYSIDLNGRNE--TLINT 433 F+ D D S Y +D+ RN L+ T Sbjct: 197 AFTAALDDDADLTFRSAAYVLDVTERNAEPRLVGT 231 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 45/254 (17%) Query: 216 EPRFSPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +P SP+ ++AY +ED L R + AP++S +G R Sbjct: 18 QPALSPDGSRIAYVVRTADREEDRNVDALWTVGASSGEARQLTRGNADAAPKWSPDGSRL 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------------- 319 +D ++ + E+LT + +SPD S+I F Sbjct: 78 AFLRAQDGPPQVWVLPADGGEAEQLTKLPLGAGAPVWSPDGSKIAFSSAIDLAAVVEAPP 137 Query: 320 -------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SD G + ++V+ + ++ + + P WSP G + Sbjct: 138 ENTPIVAERLDYKSDGPGLLKTLRSHVHVLDVATGEVQQHTF-GDWHAGQPAWSPDGTHV 196 Query: 362 AFTKFSGEKFAI------GVMKKD--GSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDG 412 AFT + + V+ ++ RL+ + W+ G++L+ + D Sbjct: 197 AFTAALDDDADLTFRSAAYVLDVTERNAEPRLVGTDQGMAGTVGWTKDGKALLVVGRTDT 256 Query: 413 DTG-SKLYSIDLNG 425 TG L + L+G Sbjct: 257 ATGHLGLLRVPLDG 270 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 99/314 (31%), Gaps = 60/314 (19%) Query: 175 SRILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 SRI +V + +N +L + R LT P++SP+ ++A+ Sbjct: 26 SRIAYVVRTADREEDRNVDALWTVGASSGEARQLTRGNADAA--PKWSPDGSRLAF--LR 81 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM---------- 282 +D + +++ AP +S +G + S D A Sbjct: 82 AQDGPPQVWVLPADGGEAEQLTKLPLGAGAPVWSPDGSKIAFSSAIDLAAVVEAPPENTP 141 Query: 283 ---------------------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-- 319 ++ +D+ + ++ T + ++SPD + + F Sbjct: 142 IVAERLDYKSDGPGLLKTLRSHVHVLDVATGEVQQHTFGDWHAGQPAWSPDGTHVAFTAA 201 Query: 320 ----SDREGKEQLYVMQSNGSDQK-RISQDKEASYFDPVWSPQGDLIAFTKFSG---EKF 371 +D + YV+ + + R+ + W+ G + + Sbjct: 202 LDDDADLTFRSAAYVLDVTERNAEPRLVGTDQGMAGTVGWTKDGKALLVVGRTDTATGHL 261 Query: 372 AIGVMKKDGSQERLLVED-------SNLQAPTWSP----SGRSLIFSRKKDGDTGSKLYS 420 + + DG + L P P +G ++F+ + G + LY Sbjct: 262 GLLRVPLDGGETVDLAASLDRNVMPGGPGYPGALPQLTEAGDVVLFAIRDRG--CTHLYE 319 Query: 421 IDLNGRNETLINTP 434 +DL G + T Sbjct: 320 VDLAGGEPRAVLTG 333 >gi|265764805|ref|ZP_06093080.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263254189|gb|EEZ25623.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1090 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +P + S +G + D IY V +LT + Sbjct: 12 LTTLTGNAASPLWMRDVQISPDGTEIAFCYKGD----IYKVSAGGGTAIQLTTQPSYECT 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPDS QI F SDR G ++VM + G +R++ +S ++P G I F+ Sbjct: 68 PIWSPDSKQIAFASDRNGNFDIFVMPATGGTAQRLTT-HSSSELPSAFTPDGKYILFSAS 126 Query: 367 SGEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF--------- 406 + + + +G + ++ +A ++PSG ++ Sbjct: 127 IQDPSQSALFPTTAMTELYKVPVNGGRTEQVLGTP-AEAVCYAPSGEFFLYQDRKGFEDE 185 Query: 407 -SRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + ++ D G++ L N +P Sbjct: 186 WRKNHTSSITRDIWLYDTKTGKHTNLTNHAGEDRNPVLSP 225 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 121/349 (34%), Gaps = 41/349 (11%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 K + + L+D K K + R + ++ KG FN Sbjct: 185 EWRKNHTSSITRDIWLYDTKTGKH---TNLTNHAGEDRNPVLSPDGKSVYLLSERKGSFN 241 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S ++ V +R+L+ S L ++ + + Y D+ Sbjct: 242 ------VYSFPLDNAQDLKAVTSFKTHPVRFLSMSHGGTLC---YAYDGE--IYTQKDNA 290 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 ++ + R D+ F + + S +GK+ V+ +++ T Sbjct: 291 TPQKINIDIVRDDQDKIADLTFTNGATSGTVSPDGKQIAFIVRG----EVFVTSTDYATT 346 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQ 343 +++T+T +++PD+ + + S+R G QL++ + +++ + Sbjct: 347 KQITHTPAREAGLTFAPDNRTLAYASERNGNWQLFLAKIARKEEANFPNATIIEEEVLLP 406 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTW 397 P +SP G +AF + + V+ D + R + + S + W Sbjct: 407 SATVERAYPQFSPDGKELAFIEERN---RLMVINLDTKKVRQITDGSTWFSTDGNFDYQW 463 Query: 398 SPSGRS--LIFSRKKDGD-TGSKLYSIDLNGRNETLINTPAYASDPQWV 443 SP G+ L F + + L S + L N+ + P+WV Sbjct: 464 SPDGKWFTLEFIGNRHDPYSDIGLVSAKGDSPITNLTNSGYMSGSPRWV 512 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 80/230 (34%), Gaps = 35/230 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V + ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----SAGGGTAIQLTTQPSYECTPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 + DI+ + +RLT + ++++PD I+F + + Q Sbjct: 84 NGNFDIFVMPATGGTAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + NG +++ ++P G+ + S I + Sbjct: 144 LYKVPVNGGRTEQVL---GTPAEAVCYAPSGEFFLYQDRKGFEDEWRKNHTSSITRDIWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + L + P SP G+S+ ++ G +YS L+ Sbjct: 201 YDTKTGKHTNLTNHAGEDRNPVLSPDGKSVYLLSERKGSF--NVYSFPLD 248 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + F+ + + + + Sbjct: 320 TVSPDGKQIAFIVRGE------VFVTSTDYATTKQITHTPAREAGLTFAPDNRTLAYASE 373 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 ++ ++ + N I +SPD ++ F +R Sbjct: 374 RNGNWQLFLAKIARKEEANFPNATIIEEEVLLPSATVERAYPQFSPDGKELAFIEER--- 430 Query: 326 EQLYVMQSNGSDQKRISQDKEA----SYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ FD WSP G + F + + IG++ Sbjct: 431 NRLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIGLVSA 490 Query: 379 DG-SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G S L + +P W G +++F+ ++ G Sbjct: 491 KGDSPITNLTNSGYMSGSPRWVLDGNAILFTTERYG 526 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + +++M Sbjct: 41 YKGDIYKVSAGGGTAIQLTTQPS-YECTPIWSPDSKQIAFASDRNGN-FDIFVM-PATGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 +R+ S L F+ +GK L S + ++Y V + TE++ Sbjct: 98 TAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTELYKVPVNGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + Y+P +++ DR+G +++ + ++ + Sbjct: 158 LGTPAEAV--CYAPSGEFFLYQ-DRKGFEDEWRKNHTSSITRDIWLYDTKTGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV SP G + F + D +Q+ V + Sbjct: 214 HAGEDRNPVLSPDGKSVYLLSERKGSFNVYSFPLDNAQDLKAVTSFKTHPVRF 266 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 130/365 (35%), Gaps = 53/365 (14%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 G V +GK V ++ V K+ +PA R+ T + D + Sbjct: 319 GTVSPDGKQIAFIVRGEVF-VTSTDYATTKQITHTPA--REAGLTFAPDNRTLAYASERN 375 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + ++ L PS P+FSP+ +++A+ Sbjct: 376 GNWQLFLAKIARKEEANFPNATII-------EEEVLLPSATVERAYPQFSPDGKELAF-- 426 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRA---LISVQKDEAMDIY 285 ++ + L V +DT+ R + S ++S +GK I + D DI Sbjct: 427 IEERNRLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIG 486 Query: 286 SVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V + + LTN+ +++ S + D + I+F ++R G L + Sbjct: 487 LVSAKGDSPITNLTNSGYMSGSPRWVLDGNAILFTTERYGMRAHASWGSQNDAMLVFLNQ 546 Query: 334 NGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFSG---------------EKFAIGVM 376 + D+ R+S++ + + + + + + Sbjct: 547 DAFDKFRLSKEDYELQKELEKEQQKDKEKASIDPKKDKKKDPQTDTEKKDEIKNILVELN 606 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TP 434 + RL SNL + S G +L + +G G L+ +DL + L++ Sbjct: 607 GLEDRIIRLTPNSSNLGSTIISKDGETLYYLSAFEG--GFDLWKMDLRKKETKLLHKMNA 664 Query: 435 AYASD 439 +AS Sbjct: 665 GWASM 669 >gi|294666207|ref|ZP_06731461.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604025|gb|EFF47422.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 779 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 13/232 (5%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + Sbjct: 216 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPGPGVS 275 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G++ S Q D + + A R + +S S+SPD + Sbjct: 276 DRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVVRCDGADMLSFSWSPDGRAL 335 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G ++ + + + +A FD P +SP G+ I F + + + Sbjct: 336 VFGSMTGTHGASRMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLR-NPQLGD 394 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +G ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 395 LWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 444 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 101/316 (31%), Gaps = 58/316 (18%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S+ V D A R L TP P +SP+ +++A++ + RV + Sbjct: 244 SLTRDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMI 303 Query: 242 MDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERL- 297 A + + + + +S +G+ + A + +DL + + L Sbjct: 304 AAATGPAASREVVRCDGADMLSFSWSPDGRALVFGSMTGTHGASRMRRLDLATRQWQALD 363 Query: 298 --TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + + YSPD + IVF + + L+ + + G +R++ D A W Sbjct: 364 YPAQAGDFDYAPRYSPDGNWIVFLRNPQ-LGDLWRIPAEGGVAERLTHD-NADIRGWSWL 421 Query: 356 PQGDLIAFTKFSGEKFAIGVMKK------------------------------------- 378 P G + F + + + + Sbjct: 422 PDGSGLIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQV 481 Query: 379 -----DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---NE 428 +G + RL P +P GR LIF+ + G G + G E Sbjct: 482 IGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYGLWWGDVSKPGSVRLIE 541 Query: 429 TLINTPAYASDPQWVG 444 L A D W Sbjct: 542 GLRPDSRQAGD--WSA 555 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD + + + S DR G L N + + Sbjct: 212 GSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTRDRAGTSILVKTTDNAYPRVLETPG 271 Query: 345 KEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPS 400 S P WSP G IAF++ + + + G S+E + + +++ + +WSP Sbjct: 272 PGVSDRLPAWSPDGRQIAFSRQAPDGSCRVMIAAATGPAASREVVRCDGADMLSFSWSPD 331 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA----------YASDPQWVGFM 446 GR+L+F S++ +DL R ++ PA Y+ D W+ F+ Sbjct: 332 GRALVFGSMTGTHGASRMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFL 387 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 75/256 (29%), Gaps = 52/256 (20%) Query: 213 ILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+SP+ + + D+ R+ +R+ + + I + +G Sbjct: 371 FDYAPRYSPDGNWIVFLRNPQLGDLWRI----PAEGGVAERLTHDNADIRGWSWLPDGSG 426 Query: 272 ALISVQKDEAMDIYSVDLQ----------------------------------------- 290 + + D +Y +DL+ Sbjct: 427 LIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTM 486 Query: 291 --SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEA 347 RL + + +PD Q++F S+R G L+ + R+ + + Sbjct: 487 NGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYGLWWGDVSKPGSVRLIEGLRPD 546 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSL 404 S WS + + A V G RL V P R L Sbjct: 547 SRQAGDWSADSQRVLVSGSDAAGHAALFEVTPGSGQVVRLPVPQPRPLQAIHLPDPDRLL 606 Query: 405 IFSRKKDGDTGSKLYS 420 + + DG T + LY Sbjct: 607 VLAAADDGHTFATLYD 622 >gi|294508436|ref|YP_003572494.1| acylaminoacyl-peptidase [Salinibacter ruber M8] gi|294344764|emb|CBH25542.1| acylaminoacyl-peptidase [Salinibacter ruber M8] Length = 703 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 58/278 (20%) Query: 212 QILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + + P+ SP+ ++ Y +D ++ +D K + ++ +PR+S Sbjct: 61 EWVANPQVSPDGSQIVYQRRGMDVMEDRRTSALWRLDADGTDHTK-LTPRTAVESSPRWS 119 Query: 267 SNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------ 319 +G + + +E +IY ++ N T R+T S+SPD + + F Sbjct: 120 PDGSKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAPSGLSWSPDGAHLAFSMHVSAP 179 Query: 320 -----------------------------SDREG-----KEQLYVMQSNGSDQKRISQDK 345 SD G + L+V++++G ++++ Sbjct: 180 EPTLASRPEPPEGADWAEPPRVETRLNHESDGTGVLDYGHDHLFVVRADGGRARQVTAGD 239 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVEDSNLQA-PTW 397 PVW+P G+ + ++ + + + + DG + L + P Sbjct: 240 YNHSSRPVWTPDGEALLYSASRHDNWERERRNSELYRVPVDGGESTPLTDRFGPDHTPRV 299 Query: 398 SPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLIN 432 SP G ++ + D + LY +D +G N +++ Sbjct: 300 SPDGETIAYLGYDDEVQTYQVTRLYVMDRDGSNRRVVD 337 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 62/249 (24%) Query: 259 MILAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+ S +G + + ++ ++ +D +LT + S +SPD Sbjct: 62 WVANPQVSPDGSQIVYQRRGMDVMEDRRTSALWRLDADGTDHTKLTPRTAVESSPRWSPD 121 Query: 313 SSQIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 S+I F SD E ++YV + RI+Q + A WSP G +AF+ Sbjct: 122 GSKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAP-SGLSWSPDGAHLAFSMHVSAPE 180 Query: 367 -----------------------------------SGEKFAIGVMKKDGSQERLLVEDSN 391 + V++ DG + R + Sbjct: 181 PTLASRPEPPEGADWAEPPRVETRLNHESDGTGVLDYGHDHLFVVRADGGRARQVTAGDY 240 Query: 392 LQA--PTWSPSGRSLIFSRKKDG-----DTGSKLYSIDLNGRNETLIN-------TPAYA 437 + P W+P G +L++S + S+LY + ++G T + TP + Sbjct: 241 NHSSRPVWTPDGEALLYSASRHDNWERERRNSELYRVPVDGGESTPLTDRFGPDHTPRVS 300 Query: 438 SDPQWVGFM 446 D + + ++ Sbjct: 301 PDGETIAYL 309 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 81/268 (30%), Gaps = 55/268 (20%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S+I F S G V A I L + + +SP+ +A++ + Sbjct: 123 SKIAFTSSDEEHGTEIYVHWVEQNKTARITQLENAPSGL----SWSPDGAHLAFSMHVSA 178 Query: 235 DIL---------------------------------------RVYLMDTRIDRAPKRIGN 255 ++++ RA + Sbjct: 179 PEPTLASRPEPPEGADWAEPPRVETRLNHESDGTGVLDYGHDHLFVVRADGGRARQVTAG 238 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISAS 308 + P ++ +G+ L S + + + +Y V + + LT+ + + Sbjct: 239 DYNHSSRPVWTPDGEALLYSASRHDNWERERRNSELYRVPVDGGESTPLTDRFGPDHTPR 298 Query: 309 YSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD I + + + +LYVM +GS+++ + S D W G+ + Sbjct: 299 VSPDGETIAYLGYDDEVQTYQVTRLYVMDRDGSNRRVVDLGLNRSIDDIAWDENGEGLYV 358 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +G DGS + Sbjct: 359 QYEDEGTTKLGHTTLDGSTSVVATNLGG 386 Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 19/224 (8%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDEDIL 237 + V + L V+ DG R +T P ++P+ + + Y+ ++ E Sbjct: 212 TGVLDYGHDHLFVVRADGGRARQVTAGDYNHSSRPVWTPDGEALLYSASRHDNWERERRN 271 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSN 292 + + PR S +G+ VQ + +Y +D + Sbjct: 272 SELYRVPVDGGESTPLTDRFGPDHTPRVSPDGETIAYLGYDDEVQTYQVTRLYVMDRDGS 331 Query: 293 ATER--LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS-- 348 L I+ A + + + + + EG +L +GS + S Sbjct: 332 NRRVVDLGLNRSIDDIA-WDENGEGLYVQYEDEGTTKLGHTTLDGSTSVVATNLGGTSIG 390 Query: 349 --YFDPVWS-PQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVE 388 Y +S + +AF + S + V ++ R L + Sbjct: 391 RPYGGGDFSVSEAGRLAFNQTSPAHPAELAVTRRGRDTTRQLTD 434 >gi|255009425|ref|ZP_05281551.1| putative exported tricorn protease [Bacteroides fragilis 3_1_12] gi|313147185|ref|ZP_07809378.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135952|gb|EFR53312.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1077 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NGK + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGKEIVFSYAGD----LYKVPAAGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M + G + R++ D P W+P G I + + F + Sbjct: 90 VYTMPATGGEPLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVDKEGGLSEAIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 N + E + N A P W+G Sbjct: 207 NSKTVENITNNVAQDIFPMWIG 228 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 142/342 (41%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + + I + ++ DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPNSKTVENITNNVAQDIFPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V D ++++ + S + I+FE N + Sbjct: 236 DRDRIMNIFVYNTKTKQTAKVTDFTEYDVKFPSASGNTIVFE-----NGGYIYKMDAATR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + + + + + A S +G R +++ + +++++ ++ Sbjct: 291 KAEKVNIALASDNIYARTDLKDGANYVTAASLSPDGARMVVTSRG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD +QI + SD G+ +LY+ + G + +++ + D Sbjct: 347 TKNITRSPGAHDRDAQWSPDGTQIAYISDATGETELYLQNAAGGEPMQLTHKNDTYIRDF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I + + ++ + LL++D T+SP L ++R Sbjct: 407 KWSPDSKKIVYMDRKN---RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRM- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + +Y ++ + E + +P +++D +++ F Sbjct: 463 GKNEINVVYVYNIAEKKEYPVTDKWYNSSSPVFSTDGKYLIF 504 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 39/280 (13%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L + GA + ++L P N +++ ++ D+ +V Sbjct: 2 NKKLILSIFVLAGAPVLLSAAGEARLLRFPA--TNGKEIVFSY--AGDLYKV----PAAG 53 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-------NT 300 +R+ + + PRFS +GK + Q D ++Y++ R+T + Sbjct: 54 GEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTEVYTMPATGGEPLRVTYTATNSRDD 113 Query: 301 LFINISA-----SYSPDSSQIVFESD-REG-KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 L + +++PD +IV+ + +G +L+ + G + I + Sbjct: 114 LGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEAIPLPEGGF---CS 170 Query: 354 WSPQGDLIAFTKF-----------SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSG 401 +SP G +A+ + G I V + + + + P W G Sbjct: 171 YSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPNSKTVENITNNVAQDIFPMWI--G 228 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + F +D +Y+ + T P Sbjct: 229 DEIFFLSDRDRIMNIFVYNTKTKQTAKVTDFTEYDVKFPS 268 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPAAGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTM-PATGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 R+ + ++ +G+R + + + +++VD + +E + Sbjct: 102 RVTYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEAI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V N + I+ + Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPNSKTVENITNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSL 404 F P+W GD I F I V Q + + + +++ P+ S G ++ Sbjct: 220 QDIF-PMW--IGDEIFFLSDRDRIMNIFVYNTKTKQTAKVTDFTEYDVKFPSAS--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAATRKAEKVN 296 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRV--EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA + + +G R+ V ++++ K + S A R Sbjct: 313 GANYVTAASLSPDGA-RMVVTSRGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D ++I ++S++ + L + + G LT D + + ++SP+ + Sbjct: 362 ---QWSPDG-TQIAYISDATG----ETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMD 283 K+ Y + RV L+D + + + + FS + + + + K+E Sbjct: 414 KIVYMDRKN----RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINV 469 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +Y ++ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYNIAEKKEYPVTDKWYNSSSPVFSTDGKYLIFSSARDFNP 512 >gi|60679676|ref|YP_209820.1| putative peptidase/protease family protein [Bacteroides fragilis NCTC 9343] gi|253564534|ref|ZP_04841991.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60491110|emb|CAH05858.1| putative peptidase/protease family protein [Bacteroides fragilis NCTC 9343] gi|251948310|gb|EES88592.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301161141|emb|CBW20679.1| putative peptidase/protease family protein [Bacteroides fragilis 638R] Length = 1090 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +P + S +G + D IY V +LT + Sbjct: 12 LTTLTGNAASPLWMRDVQISPDGTEIAFCYKGD----IYKVSAGGGTAIQLTTQPSYECT 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPDS QI F SDR G ++VM + G +R++ +S ++P G I F+ Sbjct: 68 PIWSPDSKQIAFASDRNGNFDIFVMPATGGTAQRLTT-HSSSELPSAFTPDGKYILFSAS 126 Query: 367 SGEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 + + + +G + ++ +A ++PSG ++ +K Sbjct: 127 IQDPSQSALFPTTAMTELYKVPVNGGRTEQVLGTP-AEAVCYAPSGEFFLYQDRKGFEDE 185 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L N +P Sbjct: 186 WRKHHTSSITRDIWLYDTKTGKHTNLTNHAGEDRNPVLSP 225 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 80/230 (34%), Gaps = 35/230 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V + ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----SAGGGTAIQLTTQPSYECTPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 + DI+ + +RLT + ++++PD I+F + + Q Sbjct: 84 NGNFDIFVMPATGGTAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + NG +++ ++P G+ + S I + Sbjct: 144 LYKVPVNGGRTEQVL---GTPAEAVCYAPSGEFFLYQDRKGFEDEWRKHHTSSITRDIWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + L + P SP G+S+ ++ G +YS L+ Sbjct: 201 YDTKTGKHTNLTNHAGEDRNPVLSPDGKSVYLLSERKGSF--NVYSFPLD 248 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 57/337 (16%), Positives = 119/337 (35%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L+D K K + R + ++ KG FN S Sbjct: 197 DIWLYDTKTGKH---TNLTNHAGEDRNPVLSPDGKSVYLLSERKGSFN------VYSFPL 247 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 ++ V +R+L+ S L ++ + + Y D+ ++ + R Sbjct: 248 DNAQDLKAVTSFKTHPVRFLSMSHGGTLC---YAYDGE--IYTQKDNATPQKINIDIVRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ F + + S +GK+ V+ +++ T+++T+T Sbjct: 303 DQDKIADLTFTNGATSGTVSPDGKQIAFIVRG----EVFVTSTDYATTKQITHTPAREAG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWS 355 +++PD+ + + S+R G QL++ + +++ + P +S Sbjct: 359 LTFAPDNRTLAYASERNGNWQLFLAKIARKEEANFPNATIIEEEVLLPSATVERAYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + + V+ D + R + + S + WSP G+ L F Sbjct: 419 PDGKELAFIEERN---RLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFI 475 Query: 408 RKKDGD-TGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + + L S + L N+ + P+WV Sbjct: 476 GNRHDPYSDIGLVSAKGDSPITNLTNSGYMSGSPRWV 512 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + F+ + + + + Sbjct: 320 TVSPDGKQIAFIVRGE------VFVTSTDYATTKQITHTPAREAGLTFAPDNRTLAYASE 373 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 ++ ++ + N I +SPD ++ F +R Sbjct: 374 RNGNWQLFLAKIARKEEANFPNATIIEEEVLLPSATVERAYPQFSPDGKELAFIEER--- 430 Query: 326 EQLYVMQSNGSDQKRISQDKEA----SYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ FD WSP G + F + + IG++ Sbjct: 431 NRLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIGLVSA 490 Query: 379 DG-SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G S L + +P W G +++F+ ++ G Sbjct: 491 KGDSPITNLTNSGYMSGSPRWVLDGNAILFTTERYG 526 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + +++M Sbjct: 41 YKGDIYKVSAGGGTAIQLTTQPS-YECTPIWSPDSKQIAFASDRNGN-FDIFVM-PATGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 +R+ S L F+ +GK L S + ++Y V + TE++ Sbjct: 98 TAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTELYKVPVNGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + Y+P +++ DR+G +++ + ++ + Sbjct: 158 LGTPAEAV--CYAPSGEFFLYQ-DRKGFEDEWRKHHTSSITRDIWLYDTKTGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV SP G + F + D +Q+ V + Sbjct: 214 HAGEDRNPVLSPDGKSVYLLSERKGSFNVYSFPLDNAQDLKAVTSFKTHPVRF 266 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 130/365 (35%), Gaps = 53/365 (14%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 G V +GK V ++ V K+ +PA R+ T + D + Sbjct: 319 GTVSPDGKQIAFIVRGEVF-VTSTDYATTKQITHTPA--REAGLTFAPDNRTLAYASERN 375 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + ++ L PS P+FSP+ +++A+ Sbjct: 376 GNWQLFLAKIARKEEANFPNATII-------EEEVLLPSATVERAYPQFSPDGKELAF-- 426 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRA---LISVQKDEAMDIY 285 ++ + L V +DT+ R + S ++S +GK I + D DI Sbjct: 427 IEERNRLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIG 486 Query: 286 SVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V + + LTN+ +++ S + D + I+F ++R G L + Sbjct: 487 LVSAKGDSPITNLTNSGYMSGSPRWVLDGNAILFTTERYGMRAHASWGSQNDAMLVFLNQ 546 Query: 334 NGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFSG---------------EKFAIGVM 376 + D+ R+S++ + + + + + + Sbjct: 547 DAFDKFRLSKEDYELQKELEKEQQKDKEKASIDPKKDKKKDPQTDTEKKDEIKNILVELN 606 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TP 434 + RL SNL + S G +L + +G G L+ +DL + L++ Sbjct: 607 GLEDRIIRLTPNSSNLGSTIISKDGETLYYLSAFEG--GFDLWKMDLRKKETKLLHKMNA 664 Query: 435 AYASD 439 +AS Sbjct: 665 GWASM 669 >gi|158317342|ref|YP_001509850.1| serine/threonine protein kinase [Frankia sp. EAN1pec] gi|158112747|gb|ABW14944.1| serine/threonine protein kinase [Frankia sp. EAN1pec] Length = 721 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 21/253 (8%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 A+I+ +T + D P S +++ V + + L D K + + Sbjct: 466 ADIKPITTAADD-DMLPSISKDRRTVVFFRKGSPNALYAVAAD-GSGSPVKLFTSGPAAK 523 Query: 261 LA------PRFSSNGKRALISVQKDE----AMDIYSVDLQSNATERLTNTLFINISASYS 310 L P S +GK ++ DE +Y V L + RL ++S Sbjct: 524 LTIADDARPSLSPDGKFLVVRSTTDESGFPNPGLYVVSLDGSGLFRLGAKPQA-TDPAWS 582 Query: 311 PDSSQIVFESDREGKEQLYVMQSN---GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 P I + S ++ +++ S I+ + DP +SP G IAF++ Sbjct: 583 PSGELIAYWSSETESDRGFIVTIPARPDSQPTPITNGQGNRDADPTFSPDGKRIAFSREV 642 Query: 368 GEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI---DL 423 I M DGS ER+ E Q P +SP G+ L F+ ++ G ++Y D Sbjct: 643 DGDLEIYQMNTDGSAVERVTAEPGRDQDPAYSPDGKLLSFTGER-GTPLRRIYLTDPADT 701 Query: 424 NGRNETLINTPAY 436 + L +T + Sbjct: 702 TAADRLLTSTAGF 714 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 TI+DD S++ + G F ++ S + SG L V+ DG+ + L + Sbjct: 525 TIADDARPSLSPD-GKF---LVVRSTTDESGFPNPGLYVVSLDGSGLFRL--GAKPQATD 578 Query: 217 PRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALI 274 P +SP+ + +AY + + E D + + R D P I N + A P FS +GKR Sbjct: 579 PAWSPSGELIAYWSSETESDRGFIVTIPARPDSQPTPITNGQGNRDADPTFSPDGKRIAF 638 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQ- 332 S + D ++IY ++ +A ER+T + +YSPD + F +R ++Y+ Sbjct: 639 SREVDGDLEIYQMNTDGSAVERVTAEPGRDQDPAYSPDGKLLSFTGERGTPLRRIYLTDP 698 Query: 333 SNGSDQKRISQDKEASY 349 ++ + R+ + Sbjct: 699 ADTTAADRLLTSTAGFH 715 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 21/211 (9%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAM-DIYSVDLQSNATERLTNTLF------I 303 K I + P S + + + + + D + + T+ Sbjct: 469 KPITTAADDDMLPSISKDRRTVVFFRKGSPNALYAVAADGSGSPVKLFTSGPAAKLTIAD 528 Query: 304 NISASYSPDSSQIVFES--DREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + S SPD +V S D G LYV+ +GS R+ +A+ DP WSP G+ Sbjct: 529 DARPSLSPDGKFLVVRSTTDESGFPNPGLYVVSLDGSGLFRLGAKPQAT--DPAWSPSGE 586 Query: 360 LIAFTKF---SGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDT 414 LIA+ S F + + + SQ + + PT+SP G+ + FSR+ DGD Sbjct: 587 LIAYWSSETESDRGFIVTIPARPDSQPTPITNGQGNRDADPTFSPDGKRIAFSREVDGD- 645 Query: 415 GSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 ++Y ++ +G E + P DP + Sbjct: 646 -LEIYQMNTDGSAVERVTAEPGRDQDPAYSP 675 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 21/194 (10%) Query: 270 KRALISVQKDEAMDIYS--VDLQS--NATERLTNTLFINISASYSPDSSQIVFESDREGK 325 + + ++ D+++ V Q + +T ++ S S D +VF R+G Sbjct: 440 DTMVFASDQNGNYDLFTGRVPAQGELADIKPITTAADDDMLPSISKDRRTVVF--FRKGS 497 Query: 326 EQ-LYVMQSNGSDQKRISQDKE-------ASYFDPVWSPQGDLIAFTKFSGE----KFAI 373 LY + ++GS A P SP G + + E + Sbjct: 498 PNALYAVAADGSGSPVKLFTSGPAAKLTIADDARPSLSPDGKFLVVRSTTDESGFPNPGL 557 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 V+ DGS L P WSPSG + + + + +I ++ T Sbjct: 558 YVVSLDGSGLFRLGAKPQATDPAWSPSGELIAYWSSETESDRGFIVTIPARPDSQPTPIT 617 Query: 434 PAYA---SDPQWVG 444 +DP + Sbjct: 618 NGQGNRDADPTFSP 631 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%) Query: 312 DSSQIVFESDREGKEQLYV--MQSNGS--DQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 D +VF SD+ G L+ + + G D K I+ + P S + F + Sbjct: 438 DLDTMVFASDQNGNYDLFTGRVPAQGELADIKPITTAAD-DDMLPSISKDRRTVVFFR-K 495 Query: 368 GEKFAIGVMKKDGSQ--ERLLVED-------SNLQAPTWSPSGRSLIF--SRKKDGDTGS 416 G A+ + DGS +L ++ P+ SP G+ L+ + + G Sbjct: 496 GSPNALYAVAADGSGSPVKLFTSGPAAKLTIADDARPSLSPDGKFLVVRSTTDESGFPNP 555 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 LY + L+G + A+DP W Sbjct: 556 GLYVVSLDGSGLFRLGAKPQATDPAWSP 583 >gi|219847845|ref|YP_002462278.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542104|gb|ACL23842.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM 9485] Length = 618 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 12/190 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ++FVSE + + + G + + + P +SP+ + + + T + E Sbjct: 429 MVFVSERTGAPQLYLRRLNIPLRGFAQQITSYDPACNVETPTWSPDGRSLFWVT-NCEGN 487 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILA-----------PRFSSNGKRALISVQKDEAMDIY 285 +Y D R + L R S +GK+ + +D +IY Sbjct: 488 FEIYRADVRYYYIDTLYAGVELVNLLNLTNNAANDRFARVSPDGKQIAFASDRDGNWEIY 547 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 ++ + RLTN + + ++SPD Q+ F SDR+G ++Y++ N Sbjct: 548 VMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDRDGDFEIYILNVNDGTVTTQVTQN 607 Query: 346 EASYFDPVWS 355 A P+W+ Sbjct: 608 TAQDRWPLWA 617 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 105/325 (32%), Gaps = 46/325 (14%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR--FS 220 Y + + + S + L + +G R + + + F R + Sbjct: 293 YPHLGMPWAAPDPVTPLIYASNIDTGSYWELYRANFNGGGQRLTFNNGETVAFSWRRSWE 352 Query: 221 PNQQKVAYATYDDEDILR-VYLMDTRIDRAPKR------------------------IGN 255 P QQ + + + R +Y ++ + +R Sbjct: 353 PAQQYLIVDSRRNSPNYRQIYALNAIAADSGERAPGAGALRISYSNNDGTFPPPDNDFST 412 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYS----VDLQSNATERLTN-TLFINIS-ASY 309 S +G + ++ A +Y + L+ +++T+ N+ ++ Sbjct: 413 IPGSEYNAMVSPDGNLMVFVSERTGAPQLYLRRLNIPLRG-FAQQITSYDPACNVETPTW 471 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-----------VWSPQG 358 SPD + + ++ EG ++Y + E SP G Sbjct: 472 SPDGRSLFWVTNCEGNFEIYRADVRYYYIDTLYAGVELVNLLNLTNNAANDRFARVSPDG 531 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 IAF + I VM DGS R L + APTWSP GR L F+ +DGD Sbjct: 532 KQIAFASDRDGNWEIYVMNSDGSNVRRLTNNPATDDAPTWSPDGRQLAFASDRDGDFEIY 591 Query: 418 LYSIDLNGRNETLINTPAYASDPQW 442 + +++ + A P W Sbjct: 592 ILNVNDGTVTTQVTQNTAQDRWPLW 616 >gi|312130125|ref|YP_003997465.1| peptidase s41 [Leadbetterella byssophila DSM 17132] gi|311906671|gb|ADQ17112.1| peptidase S41 [Leadbetterella byssophila DSM 17132] Length = 1081 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 28/242 (11%) Query: 214 LFEPRFSP-NQQKVAYATYDDEDILRVYLMDT----RIDRAPKRIGNFRSMILAPRFSSN 268 L P FS + + Y I+ Y D + +++ + + P+FS + Sbjct: 13 LAVPAFSQVDASLMKYPDVSSTHIVFSYANDLWLVPKTGGQAQKLSSPPGVETYPKFSPD 72 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGK-- 325 GK S D D+Y V + RLT+ + + ++ D +++F S R GK Sbjct: 73 GKEIAFSGNYDGNTDVYVVPVTGGTPRRLTSHGYQDRVVDWTVDGKEVIFASARFSGKQR 132 Query: 326 -EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----------GEKFAI 373 Q Y ++ G + ++ + +SP G +A S G K I Sbjct: 133 YNQFYKVKKEGGPESKLPLE---YAEFGSFSPDGSKMAVVYMSQVGRYWKRYKGGTKGTI 189 Query: 374 GVMK-KDGSQERL-LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETL 430 + KD + +R+ + + P WS G L F + + L+S D G+ E L Sbjct: 190 QIYDFKDNTSKRISPQDGGGDEFPMWS--GDVLYFLSDRGKEERMNLWSYDTKTGKTEQL 247 Query: 431 IN 432 + Sbjct: 248 TH 249 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 106/296 (35%), Gaps = 18/296 (6%) Query: 125 RVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDI-YQSITGEKGDFNSRILFVSES 183 V + L D +++ + + ++ H DI Y S+ + F S Sbjct: 218 DVLYFLSDRGKEERMNLWSYDTKTGKTEQLTHYKDLDIHYPSLGNGEIIFEQGGKLHLYS 277 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + +K + D ++ S D+ + S + ++ ++ D V+ + Sbjct: 278 IKDKTVKTVQVQILSDMSDYMPRQESVDRYIQSVSLSYDGKRALFSARGD-----VFSLP 332 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTN-TL 301 T+ A P +S NGK + ++Y ++ + ++LT+ Sbjct: 333 TKEGVARNLTNTSGIAERTPEYSPNGKNIAFWSDESGEYELYLQSIEQPSTKKKLTSYGP 392 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK-----RISQDKEASYFDPVWSP 356 + +SPDS +I F D+ G ++ V + K I + F WS Sbjct: 393 GFKYTPYWSPDSKKICFI-DQAG--EIKVFDLSTQTTKKVDKLLIFSHGNTAGFSCEWSS 449 Query: 357 QGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKK 410 IA+++ + + + + + + + P++ PSGR L ++ Sbjct: 450 DSRWIAYSRDLPNSHRAVFLYNVESGKSTKITDGFYSCSNPSFDPSGRYLFVVTQQ 505 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 40/276 (14%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 S+ ++ I+F N L ++ + G + L+ S + P+FSP+ + Sbjct: 24 SLMKYPDVSSTHIVF--------SYANDLWLVPKTGGQAQKLS-SPPGVETYPKFSPDGK 74 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DE 280 ++A++ D + VY++ P+R+ + ++ +GK + + + Sbjct: 75 EIAFSGNYDGNT-DVYVVPV-TGGTPRRLTSHGYQDRVVDWTVDGKEVIFASARFSGKQR 132 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV--FESDREG---------KEQLY 329 Y V + +L S+SPD S++ + S K + Sbjct: 133 YNQFYKVKKEGGPESKLPLEYAE--FGSFSPDGSKMAVVYMSQVGRYWKRYKGGTKGTIQ 190 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLLV 387 + + KRIS P+WS GD++ F G E+ + + L Sbjct: 191 IYDFKDNTSKRISPQDGGGDEFPMWS--GDVLYFLSDRGKEERMNLWSYDTKTGKTEQLT 248 Query: 388 E--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 D ++ P+ +G +IF ++ G LYSI Sbjct: 249 HYKDLDIHYPS-LGNGE-IIF--EQGGK--LHLYSI 278 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 110/371 (29%), Gaps = 91/371 (24%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R +H D + K ++F S N + ++G L Sbjct: 100 RLTSHGYQDRVVDWTVDGK-----EVIFASARFSGKQRYNQFYKVKKEGGPESKLPL--- 151 Query: 212 QILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRI--------DRAPKRIG-NFRSMIL 261 + FSP+ K+A + Y T+ D KRI Sbjct: 152 EYAEFGSFSPDGSKMAVVYMSQVGRYWKRYKGGTKGTIQIYDFKDNTSKRISPQDGGGDE 211 Query: 262 APRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFI---------------- 303 P +S G + E M+++S D ++ TE+LT+ + Sbjct: 212 FPMWS--GDVLYFLSDRGKEERMNLWSYDTKTGKTEQLTHYKDLDIHYPSLGNGEIIFEQ 269 Query: 304 --------------------------NISA------------SYSPDSSQIVFESDREGK 325 + S S D + +F + + Sbjct: 270 GGKLHLYSIKDKTVKTVQVQILSDMSDYMPRQESVDRYIQSVSLSYDGKRALFSA----R 325 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD-GSQER 384 ++ + + + ++ + P +SP G IAF ++ + + + S ++ Sbjct: 326 GDVFSLPTKEGVARNLTNTSGIAERTPEYSPNGKNIAFWSDESGEYELYLQSIEQPSTKK 385 Query: 385 LLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA------- 435 L P WSP + + F + L + ++ LI + Sbjct: 386 KLTSYGPGFKYTPYWSPDSKKICFIDQAGEIKVFDLSTQTTKKVDKLLIFSHGNTAGFSC 445 Query: 436 -YASDPQWVGF 445 ++SD +W+ + Sbjct: 446 EWSSDSRWIAY 456 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 9/84 (10%) Query: 356 PQ--GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 P I F+ + + ++ K G Q + L ++ P +SP G+ + FS DG Sbjct: 29 PDVSSTHIVFSYAND----LWLVPKTGGQAQKLSSPPGVETYPKFSPDGKEIAFSGNYDG 84 Query: 413 DTGSKLYSIDLNGRNETLINTPAY 436 +T +Y + + G + + Y Sbjct: 85 NT--DVYVVPVTGGTPRRLTSHGY 106 >gi|32564215|ref|NP_496867.2| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] gi|25809200|emb|CAB05698.2| C. elegans protein C31C9.1a, confirmed by transcript evidence [Caenorhabditis elegans] gi|25809223|emb|CAB02296.2| C. elegans protein C31C9.1a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 473 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 81/208 (38%), Gaps = 32/208 (15%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R +R+ + S +G + + + +++Y +D+ ++TN L + Sbjct: 203 RYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQITNELGYD 262 Query: 305 ISASYSPDSSQIVFESDREGK--------------------EQLYVMQSNGSDQKRISQD 344 + ++PD +++F + R +L+++ +G + ++I+ Sbjct: 263 GGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDIDGQNLRKITNL 322 Query: 345 KEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTW- 397 EA++ + + I F+ F++ ++ DG+ + + Q ++ Sbjct: 323 GEANWAPYMLN-DNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQIT-FGQNQFNSFA 380 Query: 398 --SPSGRSLIFSRKKDGDT-GSKLYSID 422 S G+ L++ ++G L+ D Sbjct: 381 MQSYDGKKLVWGSSRNGTMYELNLFIAD 408 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 26/176 (14%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ VD N +RLT++ + SPD ++I F S R G +LY+M +G + +I Sbjct: 196 YDIFKVDRYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQI 255 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEK--------------------FAIGVMKKDGS 381 + + ++P G + F + + ++ DG Sbjct: 256 TNEL-GYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDIDGQ 314 Query: 382 QERLLVEDS-NLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGRNETLIN 432 R + AP + +IFS D G LY ++ +G I Sbjct: 315 NLRKITNLGEANWAPYMLNDNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQIT 370 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 30/217 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +DR G N E SP+ K+A+ + D L +Y+MD + Sbjct: 195 DYDIFKVDRYG-NFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGD-LELYIMDID-GKN 251 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEA--------------------MDIYSVDL 289 +I N F+ +GKR + + + M+++ VD+ Sbjct: 252 LIQITNELGYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDI 311 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ 343 ++TN N + D+ +I+F S+ + G LY++ +G+ ++I+ Sbjct: 312 DGQNLRKITNLGEANWAPYMLNDNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQITF 371 Query: 344 DKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + + S G + + + +G + + + D Sbjct: 372 GQNQFNSFAMQSYDGKKLVWGSSRNGTMYELNLFIAD 408 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 41/282 (14%) Query: 195 VMDRDG----ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRID-- 247 V+ DG AN++ LT FS + K+ D ++Y +D ID Sbjct: 61 VVHFDGETHLANVKQLTFGGMNAEGY--FSFDNSKLTLQATGYGTDCDQIYELDLNIDPR 118 Query: 248 -RAPKRIGNFRSMILAPRF--SSNGKRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFI 303 + +RI F ++ L + + D+ ++ N Sbjct: 119 LQTLRRISTGLGATTCSYFYKEADNNHRLYAGNWWNVKVDNTTDVSKTCPPKQCANPQTD 178 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + + + D ++ + G+ +R++ D + V SP G IAF Sbjct: 179 ELKHLCNTS-----YTWDIFADYDIFKVDRYGNFVQRLT-DSPGYDAEGVVSPDGTKIAF 232 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGS------ 416 T + +M DG + + ++P G+ LIF + + Sbjct: 233 TSIRSGDLELYIMDIDGKNLIQITNELGYDGGSFFTPDGKRLIFRASRPKNETEIAKYKK 292 Query: 417 ------------KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +L+ +D++G+N I A+ W +M Sbjct: 293 LLSYNLVEPIAMELFIVDIDGQNLRKITNLGEAN---WAPYM 331 >gi|108803163|ref|YP_643100.1| peptidase S9, prolyl oligopeptidase active site region [Rubrobacter xylanophilus DSM 9941] gi|108764406|gb|ABG03288.1| peptidase S9, prolyl oligopeptidase active site region [Rubrobacter xylanophilus DSM 9941] Length = 588 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 5/172 (2%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S +G+R + V + E+LT A YSP + ++V+ D G Sbjct: 19 WSPDGRRVTFITSITGVPQAWEVAAEGGWPEQLTFHEERVAQAEYSPAAERLVYSMDAGG 78 Query: 325 K--EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF--TKFSGEKFAIGVMKKDG 380 QL+V+ ++ ++ +A + +SP G IA+ T+ +G F + V DG Sbjct: 79 NERMQLFVLDRRTGVERDLTGRPDAIHHFGAFSPDGGRIAYTATRRNGTDFDVYVQSLDG 138 Query: 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 E + WSP G SL+ SR + + L+ +DL TL+ Sbjct: 139 EPEPVWEVSGYHAVACWSPDGSSLVVSRHRS-NMDGDLFLLDLESGEATLLT 189 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 103/281 (36%), Gaps = 12/281 (4%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 E R+++ ++ G + L V+DR R LT D I FSP+ ++ Sbjct: 60 QAEYSPAAERLVYSMDAG--GNERMQLFVLDRRTGVERDLTGRPDAIHHFGAFSPDGGRI 117 Query: 227 AYA-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 AY T + VY+ D P+ + +S +G ++S + + D+ Sbjct: 118 AYTATRRNGTDFDVYVQSL--DGEPEPVWEVSGYHAVACWSPDGSSLVVSRHRSNMDGDL 175 Query: 285 YSVDLQSNATERLTNTLFINI--SASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRI 341 + +DL+S LT SA +PD + +DR+G +L + + + + + Sbjct: 176 FLLDLESGEATLLTPHEGEARFHSARITPDGRSLYLATDRDGDFLRLARLDLSTLEVEYL 235 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPS 400 + D + S G +A T+ + + +G + +SP Sbjct: 236 TPD-DHDVEGVELSRDGRYLAATRNVEGYSDLMLFTGEGRRMPDPQPPQGVFGGLAFSPD 294 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 R L + D ++ ++L + A P+ Sbjct: 295 SRRLALTLT-GPDRNPDIWVLELPDGEARRLTRSTTAGIPR 334 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 85/215 (39%), Gaps = 14/215 (6%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ ++V + T + P+++ + +S +R + S+ Sbjct: 19 WSPDGRRVTFITSITG--VPQAWEVAAEGGWPEQLTFHEERVAQAEYSPAAERLVYSMDA 76 Query: 279 DEA--MDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDR--EGKEQLYVMQS 333 M ++ +D ++ LT I+ ++SPD +I + + R +YV Sbjct: 77 GGNERMQLFVLDRRTGVERDLTGRPDAIHHFGAFSPDGGRIAYTATRRNGTDFDVYVQSL 136 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLV---ED 389 +G + + + WSP G + + S + ++ + + LL + Sbjct: 137 DGEPEPV--WEVSGYHAVACWSPDGSSLVVSRHRSNMDGDLFLLDLESGEATLLTPHEGE 194 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + +P GRSL + +DGD +L +DL+ Sbjct: 195 ARFHSARITPDGRSLYLATDRDGDF-LRLARLDLS 228 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 A +SPD ++ F + G Q + + + G ++++ +E +SP + + ++ Sbjct: 15 YGAGWSPDGRRVTFITSITGVPQAWEVAAEGGWPEQLTFHEER-VAQAEYSPAAERLVYS 73 Query: 365 KFSGEK--FAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +G + V+ + ER L + +SP G + ++ + T +Y Sbjct: 74 MDAGGNERMQLFVLDRRTGVERDLTGRPDAIHHFGAFSPDGGRIAYTATRRNGTDFDVYV 133 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 L+G E + Y + W Sbjct: 134 QSLDGEPEPVWEVSGYHAVACWSP 157 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 93/246 (37%), Gaps = 18/246 (7%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP-RFSP 221 Y ++ D +S ++ S + G L ++D + LTP + F R +P Sbjct: 149 YHAVACWSPDGSSLVVSRHRSNMDG----DLFLLDLESGEATLLTPHEGEARFHSARITP 204 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + + + AT D D LR+ +D + + + S +G+ + + Sbjct: 205 DGRSLYLATDRDGDFLRLARLDLST-LEVEYLTPDDHDVEGVELSRDGRYLAATRNVEGY 263 Query: 282 MDIYSVDLQSNATERLTNTL---FINISASYSPDSSQIVFE-SDREGKEQLYVMQSNGSD 337 D+ + R+ + + ++SPDS ++ + + ++V++ + Sbjct: 264 SDLMLF---TGEGRRMPDPQPPQGVFGGLAFSPDSRRLALTLTGPDRNPDIWVLELPDGE 320 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE----DSNLQ 393 +R+++ A + + L+ + F G K + + + ++V+ + Sbjct: 321 ARRLTRSTTAGIPRSTF-RRPRLVRYPTFDGRKIPALLYEPEAGNAPVVVDVHGGPEAQE 379 Query: 394 APTWSP 399 P + P Sbjct: 380 RPDFDP 385 >gi|53711360|ref|YP_097352.1| putative Tricorn-like protease [Bacteroides fragilis YCH46] gi|52214225|dbj|BAD46818.1| putative Tricorn-like protease [Bacteroides fragilis YCH46] Length = 1090 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +P + S +G + D IY V RLT + Sbjct: 12 LTTLTGNAASPLWMRDVQISPDGTEIAFCYKGD----IYKVSAGGGTAIRLTTQPSYECT 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPDS QI F SDR G ++VM + G +R++ +S ++P G I F+ Sbjct: 68 PIWSPDSKQIAFASDRNGNFDIFVMPATGGTAQRLTT-HSSSELPSAFTPDGKYILFSAS 126 Query: 367 SGEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 + + + +G + ++ +A ++PSG ++ +K Sbjct: 127 IQDPSQSALFPTTAMTELYKVPVNGGRTEQVLGTP-AEAVCYAPSGEFFLYQDRKGFEDE 185 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G++ L + +P Sbjct: 186 WRKHHTSSITRDIWLYDTKTGKHTNLTHHAGEDRNPVLSP 225 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 35/230 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V + R+ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----SAGGGTAIRLTTQPSYECTPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 + DI+ + +RLT + ++++PD I+F + + Q Sbjct: 84 NGNFDIFVMPATGGTAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + NG +++ ++P G+ + S I + Sbjct: 144 LYKVPVNGGRTEQVL---GTPAEAVCYAPSGEFFLYQDRKGFEDEWRKHHTSSITRDIWL 200 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + L + P SP G+S+ ++ G +YS L+ Sbjct: 201 YDTKTGKHTNLTHHAGEDRNPVLSPDGKSVYLLSERKGSF--NVYSFPLD 248 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 57/337 (16%), Positives = 118/337 (35%), Gaps = 41/337 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L+D K K R + ++ KG FN S Sbjct: 197 DIWLYDTKTGKH---TNLTHHAGEDRNPVLSPDGKSVYLLSERKGSFN------VYSFPL 247 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 ++ V +R+L+ S L ++ + + Y D+ ++ + R Sbjct: 248 DNAQDLKAVTSFKTHPVRFLSMSHGGTLC---YAYDGE--IYTQKDNATPQKINIDIVRD 302 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 D+ F + + S +GK+ V+ +++ T+++T+T Sbjct: 303 DQDKIADLTFTNGATSGTVSPDGKQIAFIVRG----EVFVTSTDYATTKQITHTPAREAG 358 Query: 307 ASYSPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWS 355 +++PD+ + + S+R G QL++ + +++ + P +S Sbjct: 359 LTFAPDNRTLAYASERNGNWQLFLAKIARKEEANFPNATIIEEEVLLPSATVERAYPQFS 418 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFS 407 P G +AF + + V+ D + R + + S + WSP G+ L F Sbjct: 419 PDGKELAFIEERN---RLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFI 475 Query: 408 RKKDGD-TGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + + L S + L N+ + P+WV Sbjct: 476 GNRHDPYSDIGLVSAKGDSPITNLTNSGYMSGSPRWV 512 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + F+ + + + + Sbjct: 320 TVSPDGKQIAFIVRGE------VFVTSTDYATTKQITHTPAREAGLTFAPDNRTLAYASE 373 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 ++ ++ + N I +SPD ++ F +R Sbjct: 374 RNGNWQLFLAKIARKEEANFPNATIIEEEVLLPSATVERAYPQFSPDGKELAFIEER--- 430 Query: 326 EQLYVMQSNGSDQKRISQDKEA----SYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ FD WSP G + F + + IG++ Sbjct: 431 NRLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIGLVSA 490 Query: 379 DG-SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G S L + +P W G +++F+ ++ G Sbjct: 491 KGDSPITNLTNSGYMSGSPRWVLDGNAILFTTERYG 526 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 31/233 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + +++M Sbjct: 41 YKGDIYKVSAGGGTAIRLTTQPS-YECTPIWSPDSKQIAFASDRNGN-FDIFVM-PATGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 +R+ S L F+ +GK L S + ++Y V + TE++ Sbjct: 98 TAQRLTTHSSSELPSAFTPDGKYILFSASIQDPSQSALFPTTAMTELYKVPVNGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + Y+P +++ DR+G +++ + ++ Sbjct: 158 LGTPAEAV--CYAPSGEFFLYQ-DRKGFEDEWRKHHTSSITRDIWLYDTKTGKHTNLTH- 213 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV SP G + F + D +Q+ V + Sbjct: 214 HAGEDRNPVLSPDGKSVYLLSERKGSFNVYSFPLDNAQDLKAVTSFKTHPVRF 266 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 130/365 (35%), Gaps = 53/365 (14%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 G V +GK V ++ V K+ +PA R+ T + D + Sbjct: 319 GTVSPDGKQIAFIVRGEVF-VTSTDYATTKQITHTPA--REAGLTFAPDNRTLAYASERN 375 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + ++ L PS P+FSP+ +++A+ Sbjct: 376 GNWQLFLAKIARKEEANFPNATII-------EEEVLLPSATVERAYPQFSPDGKELAF-- 426 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRA---LISVQKDEAMDIY 285 ++ + L V +DT+ R + S ++S +GK I + D DI Sbjct: 427 IEERNRLMVINLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIG 486 Query: 286 SVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V + + LTN+ +++ S + D + I+F ++R G L + Sbjct: 487 LVSAKGDSPITNLTNSGYMSGSPRWVLDGNAILFTTERYGMRAHASWGSQNDAMLVFLNQ 546 Query: 334 NGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKFSG---------------EKFAIGVM 376 + D+ R+S++ + + + + + + Sbjct: 547 DAFDKFRLSKEDYELQKELEKEQQKDKEKASIDPKKDKKKDPQTDTEKKDEIKNILVELN 606 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TP 434 + RL SNL + S G +L + +G G L+ +DL + L++ Sbjct: 607 GLEDRIIRLTPNSSNLGSTIISKDGETLYYLSAFEG--GFDLWKMDLRKKETKLLHKMNA 664 Query: 435 AYASD 439 +AS Sbjct: 665 GWASM 669 >gi|313886322|ref|ZP_07820047.1| WD40-like protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924191|gb|EFR34975.1| WD40-like protein [Porphyromonas asaccharolytica PR426713P-I] Length = 1097 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 33/211 (15%) Query: 262 APRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 PR+ S +G + Q D IY VD LT + ++SPD + Sbjct: 30 TPRWLRYAQISPDGNQIAFCYQGD----IYIVDAIGGEARLLTGSDGYESHPTWSPDGKR 85 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------- 364 I F S+R+G +Y M + G D KRI+ S+ ++P G I + Sbjct: 86 IAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHTVECYTPDGRFIIMSESLQQPATSAL 145 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG-RSLI---------FSRKKDGDT 414 SG + ++ DG +L L+A T+S G R + + + Sbjct: 146 NPSGILSQLYMIPVDGGTP-MLYNARPLEAVTFSHRGDRYVAQDIKGFENKWRKHHTSSV 204 Query: 415 GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +Y +D G P P + Sbjct: 205 TRDIYIVDPKTGATTACTLEPGEDLSPVFGP 235 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 109/303 (35%), Gaps = 38/303 (12%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + ++ G + + F+SE S + + + +T R+ + S + Sbjct: 227 EDLSPVFGPDDQTVFFISERGKSNSLN--VWKQRIGEQTAQQVTSFRNHPVRFLSISRSG 284 Query: 224 Q-KVAY----ATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALI 274 + AY T + + + R D+ +R + P SS+GK+ Sbjct: 285 RLCFAYDGDLYTMTEGRSPQKVQITLRTEGPKDKVYRRTASSGGSSFTP--SSDGKQLAF 342 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ D +Y ++ T+R+T + S ++SPDS +V++S R+GK LY Sbjct: 343 IMRGD----VYVTSVEHGTTKRITQSAGAEESVTWSPDSKTLVYDSRRDGKHILYKATIA 398 Query: 335 GS-----------DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 ++ + + + P +SP G LIAF G++ I + + Sbjct: 399 SDKELDFASATIIKEEPLMPECKMEQALPQYSPDGKLIAFV---GDRKRIYTYNVESKKL 455 Query: 384 RLLVEDSN------LQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAY 436 + + + WSP R + F + + + G + Y Sbjct: 456 TQVTSGKDQPEMHGYISYEWSPDSRWIAFGYTPNVHAPFGDVGLVRATGGEVINLTNTGY 515 Query: 437 ASD 439 SD Sbjct: 516 FSD 518 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 44/236 (18%) Query: 217 PRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 PR+ SP+ ++A+ D +Y++D I + + P +S +GK Sbjct: 31 PRWLRYAQISPDGNQIAFCYQGD-----IYIVD-AIGGEARLLTGSDGYESHPTWSPDGK 84 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVF--------ES- 320 R +D IY++ +R+T+ + Y+PD I+ S Sbjct: 85 RIAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHTVECYTPDGRFIIMSESLQQPATSA 144 Query: 321 -DREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA------ 372 + G QLY++ +G +S +GD + + F Sbjct: 145 LNPSGILSQLYMIPVDGGTP---MLYNARPLEAVTFSHRGDR--YVAQDIKGFENKWRKH 199 Query: 373 --------IGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 I ++ +E +P + P +++ F ++ ++ Sbjct: 200 HTSSVTRDIYIVDPKTGATTACTLEPGEDLSPVFGPDDQTVFFISERGKSNSLNVW 255 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 T S F P S + +++A+ D VY+ KRI + +S Sbjct: 323 TASSGGSSFTP--SSDGKQLAFIMRGD-----VYVTSVE-HGTTKRITQSAGAEESVTWS 374 Query: 267 SNGKRALISVQKDEAMDIYSVDLQS------------NATERLTNTLFINISASYSPDSS 314 + K + ++D +Y + S + YSPD Sbjct: 375 PDSKTLVYDSRRDGKHILYKATIASDKELDFASATIIKEEPLMPECKMEQALPQYSPDGK 434 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDLIAF--TKFSG 368 I F DR +++Y +++ K+ Y WSP IAF T Sbjct: 435 LIAFVGDR---KRIYTYNVESKKLTQVTSGKDQPEMHGYISYEWSPDSRWIAFGYTPNVH 491 Query: 369 EKF-AIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGSKLY 419 F +G+++ G + L T W G +++F+ + G + Sbjct: 492 APFGDVGLVRATGGEVINLTNTGYFSDLTGWVMDGNAILFTSDRYGMRNHASW 544 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 42/335 (12%), Positives = 105/335 (31%), Gaps = 88/335 (26%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + ++D G R L D P +SP+ +++A+ + D +Y M + + Sbjct: 50 YQGDIYIVDAIGGEAR-LLTGSDGYESHPTWSPDGKRIAFMSNRDGH-RSIYTM-SALGG 106 Query: 249 APKRIGNFRSMILAP-RFSSNGKRALIS----------VQKDEAM-DIYSVDLQSNAT-- 294 KRI + ++ +G+ ++S + + +Y + + Sbjct: 107 DVKRITHHSGNSHTVECYTPDGRFIIMSESLQQPATSALNPSGILSQLYMIPVDGGTPML 166 Query: 295 -----------------------------------ERLTNTLFI---------------- 303 +T ++I Sbjct: 167 YNARPLEAVTFSHRGDRYVAQDIKGFENKWRKHHTSSVTRDIYIVDPKTGATTACTLEPG 226 Query: 304 -NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSP---- 356 ++S + PD + F S+R L V + +Q ++++ + S Sbjct: 227 EDLSPVFGPDDQTVFFISERGKSNSLNVWKQRIGEQTAQQVTSFRNHPVRFLSISRSGRL 286 Query: 357 ----QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP--SGRSLIFSRKK 410 GDL T+ + ++ +G ++++ ++ +++P G+ L F + Sbjct: 287 CFAYDGDLYTMTEGRSPQKVQITLRTEGPKDKVYRRTASSGGSSFTPSSDGKQLAFIMR- 345 Query: 411 DGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +Y + +G + + + W Sbjct: 346 -----GDVYVTSVEHGTTKRITQSAGAEESVTWSP 375 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 ++Q+ SP G+ IAF I ++ G + RLL D PTWSP Sbjct: 26 VAQETPRWLRYAQISPDGNQIAFCYQGD----IYIVDAIGGEARLLTGSDGYESHPTWSP 81 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G+ + F +DG +Y++ G + I + S Sbjct: 82 DGKRIAFMSNRDGHR--SIYTMSALGGDVKRITHHSGNSH 119 Score = 41.5 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 16/230 (6%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + SP S R IA + +++ + ++ + + VMD N Sbjct: 472 SYEWSPDS-RWIAFGYTPNVHAPFGDVGLVRATGGEVINLTNTGYFSDLTGWVMD---GN 527 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 T R + + A+ + + + M R G A Sbjct: 528 AILFTSDRYGMRNHASW--GSMSDAFLVFLNRKAYEKFSMTPEERDLYDRAGLDTLQYGA 585 Query: 263 -PRFSSNGKRALISVQKDEAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIVFE 319 P + + S +K + V++Q RLT A D + + Sbjct: 586 EPVPAED------SAKKKDETKPIVVEIQGIEDRIVRLTPNSSDLADAYVDADGKNLYYL 639 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 S EG L+ + + Q + +P+GD I F SG Sbjct: 640 SAFEGGYNLWQTDLREGNTSMLRQLDLSGSAYMRPTPKGDKI-FVMSSGR 688 >gi|21244171|ref|NP_643753.1| hypothetical protein XAC3446 [Xanthomonas axonopodis pv. citri str. 306] gi|21109805|gb|AAM38289.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 784 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 13/232 (5%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + Sbjct: 221 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPGPGVS 280 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G++ S Q D + I A R + +S S+SPD + Sbjct: 281 DRLPAWSPDGRQIAFSRQAPDGSCRIMIAAATGPAASRELVRCDGADMLSFSWSPDGRAL 340 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G ++ + + + +A FD P +SP G+ I F + + + Sbjct: 341 VFGSMTGTRGAVRMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLR-NPQLGD 399 Query: 373 IGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +G ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 400 LWRIPAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 449 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 103/316 (32%), Gaps = 58/316 (18%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S+ V D A R L TP P +SP+ +++A++ + R+ + Sbjct: 249 SLTGDRAGTSILVKTTDNAYPRVLETPGPGVSDRLPAWSPDGRQIAFSRQAPDGSCRIMI 308 Query: 242 MDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERL- 297 A + + + + +S +G+ + A+ + +DL + + L Sbjct: 309 AAATGPAASRELVRCDGADMLSFSWSPDGRALVFGSMTGTRGAVRMRRLDLATRQWQALD 368 Query: 298 --TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + + YSPD + IVF + + L+ + + G +R++ D A W Sbjct: 369 YPAQAGDFDYAPRYSPDGNWIVFLRNPQ-LGDLWRIPAEGGVAERLTHD-NADIRGWSWL 426 Query: 356 PQGDLIAFTKFSGEKFAIGVMKK------------------------------------- 378 P G + F + + + + Sbjct: 427 PDGSGLIFGRRVDSEARLYRLDLRDHSLHDVGVDDAQAPDVAHGHLVFVQRKPQFGVYQV 486 Query: 379 -----DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---NE 428 +G + RL P +P GR LIF+ + G G + G E Sbjct: 487 IGDTMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIFASNRSGAYGLWWGDVSKPGSVRLIE 546 Query: 429 TLINTPAYASDPQWVG 444 L A+D W Sbjct: 547 GLRPDSRQAAD--WSA 560 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD + + + S DR G L N + + Sbjct: 217 GSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPG 276 Query: 345 KEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPS 400 S P WSP G IAF++ + I + G S+E + + +++ + +WSP Sbjct: 277 PGVSDRLPAWSPDGRQIAFSRQAPDGSCRIMIAAATGPAASRELVRCDGADMLSFSWSPD 336 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA----------YASDPQWVGFM 446 GR+L+F ++ +DL R ++ PA Y+ D W+ F+ Sbjct: 337 GRALVFGSMTGTRGAVRMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFL 392 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 52/292 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 ++F S + G ++ + + PR+SP+ + + D Sbjct: 340 LVFGSMTGTRGAVRMRRLDLATRQWQALDYPAQAGDFDYAPRYSPDGNWIVFLRNPQLGD 399 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ----- 290 + R+ +R+ + + I + +G + + D +Y +DL+ Sbjct: 400 LWRI----PAEGGVAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEARLYRLDLRDHSLH 455 Query: 291 --------------------------------------SNATERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 456 DVGVDDAQAPDVAHGHLVFVQRKPQFGVYQVIGDTMNGGYIRRRLFPSSGRDDQPMIAPD 515 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q++F S+R G L+ + R+ + + S WS + + Sbjct: 516 GRQLIFASNRSGAYGLWWGDVSKPGSVRLIEGLRPDSRQAADWSADSQRVLVSGSDAAGH 575 Query: 372 A--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYS 420 A V G RL V P R L+ + DG T + LY Sbjct: 576 AALFEVTPGSGQVVRLPVPQPRPLQAIHLPDPHRLLVLAAADDGHTFATLYD 627 >gi|190575753|ref|YP_001973598.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190013675|emb|CAQ47310.1| putative transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 776 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 58/320 (18%), Positives = 111/320 (34%), Gaps = 21/320 (6%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKN 191 D I + ++PA + + D + S + + I F G Sbjct: 244 DGAGGGVIKVQTSGNAPARQLALPPKGASDRFPSWSPDG----REIAFARFGADGG---C 296 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G +R T L ++P+ + + + + R + + Sbjct: 297 QVLIASATGGGVRQATRCDGTELLSFDWTPDGRGLVFGSMVGRYAHRGIRVLDLASGQWR 356 Query: 252 RIG---NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + APR+S +GK + V+ + D++ + E+LTN + Sbjct: 357 ALDYAVDQDDFDYAPRYSPDGKWLVF-VRNPQMGDLWRMPAGGGELEQLTNESAEQRGWA 415 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + D IVF + + +LY + +++ + P S GD++AF Sbjct: 416 WLGDGRSIVFGRRVDSEVRLYYLDV---ERRTLRDAGLDDAQWPAVSRHGDVLAFVHRRA 472 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + V GS ERL P +P GR L+F+ + G L+ D+ R + Sbjct: 473 QFGVFKVPMAGGSAERLFASSGRDGQPMAAPDGRQLVFTSDRSGSFA--LWWADMQ-RPD 529 Query: 429 TLINTPAYASD----PQWVG 444 +L + P W Sbjct: 530 SLRPIEGLRPEGRQAPDWSA 549 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 17/252 (6%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAY-ATYDDEDILRVYLMDTRIDRAPKRIGNFR-- 257 L + P SP+ +VAY +D V + T + +++ Sbjct: 211 QRPYRLITATSGFETYPTLSPDGSQVAYEGANEDGAGGGVIKVQTSGNAPARQLALPPKG 270 Query: 258 SMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSNATERLTNTLFIN-ISASYSPDSSQ 315 + P +S +G+ + D + + T +S ++PD Sbjct: 271 ASDRFPSWSPDGREIAFARFGADGGCQVLIASATGGGVRQATRCDGTELLSFDWTPDGRG 330 Query: 316 IVFES--DREGKEQLYVMQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +VF S R + V+ + + D++ + P +SP G + F + + + Sbjct: 331 LVFGSMVGRYAHRGIRVLDLASGQWRALDYAVDQDDFDYAPRYSPDGKWLVFVR-NPQMG 389 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + M G + L +S Q W GRS++F R+ D + +LY +D+ E Sbjct: 390 DLWRMPAGGGELEQLTNESAEQRGWAWLGDGRSIVFGRRVDSEV--RLYYLDV----ERR 443 Query: 431 INTPAYASDPQW 442 A D QW Sbjct: 444 TLRDAGLDDAQW 455 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 16/211 (7%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA---TERLTNTL-- 301 R + I P S +G + ++ + +Q++ +L Sbjct: 211 QRPYRLITATSGFETYPTLSPDGSQVAYEGANEDGAGGGVIKVQTSGNAPARQLALPPKG 270 Query: 302 FINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + S+SPD +I F +G Q+ + + G ++ ++ W+P G Sbjct: 271 ASDRFPSWSPDGREIAFARFGADGGCQVLIASATGGGVRQATRCDGTELLSFDWTPDGRG 330 Query: 361 IAFTKFSGEKFA--IGVMKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 + F G I V+ Q R L +D AP +SP G+ L+F R Sbjct: 331 LVFGSMVGRYAHRGIRVLDLASGQWRALDYAVDQDDFDYAPRYSPDGKWLVFVRN---PQ 387 Query: 415 GSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 L+ + G E L N A W+G Sbjct: 388 MGDLWRMPAGGGELEQLTNESAEQRGWAWLG 418 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 17/169 (10%) Query: 295 ERLTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRIS-QDKEASYF 350 +T T + SPD SQ+ +E D G + V S + ++++ K AS Sbjct: 215 RLITATSGFETYPTLSPDGSQVAYEGANEDGAGGGVIKVQTSGNAPARQLALPPKGASDR 274 Query: 351 DPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFS 407 P WSP G IAF +F + + + G R + + L + W+P GR L+F Sbjct: 275 FPSWSPDGREIAFARFGADGGCQVLIASATGGGVRQATRCDGTELLSFDWTPDGRGLVFG 334 Query: 408 RKKDGDTGSKLYSIDLNGRNETLIN----------TPAYASDPQWVGFM 446 + +DL ++ P Y+ D +W+ F+ Sbjct: 335 SMVGRYAHRGIRVLDLASGQWRALDYAVDQDDFDYAPRYSPDGKWLVFV 383 >gi|162456252|ref|YP_001618619.1| hypothetical protein sce7969 [Sorangium cellulosum 'So ce 56'] gi|161166834|emb|CAN98139.1| hypothetical protein sce7969 [Sorangium cellulosum 'So ce 56'] Length = 1017 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 6/187 (3%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DG + P SP VA++ +R +R Sbjct: 418 PDGDEPWRRRLTHGLRSAAPDVSPTGDLVAFSLNSKGTRYLEIARLSRDGALSERRDLVP 477 Query: 258 S----MILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 S +P FS +GKR SV DI VD+ + ++T +++ +SPD Sbjct: 478 SARFEQAYSPSFSPDGKRLAYSVWTAGGYRDIRVVDVATGGFRQVTRDRATDMNPVWSPD 537 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + F SDR G +Y + ++++ + + P SP G + + ++ Sbjct: 538 GETLYFTSDRTGIHNVYAYDVSSGALRQVTNVRLGAL-HPAISPDGKTLVYVGYTSRGHD 596 Query: 373 IGVMKKD 379 + M D Sbjct: 597 LFAMPLD 603 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 107/335 (31%), Gaps = 32/335 (9%) Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE--KGDFNSRILFVSESVVS 186 RL+ R+Q+ + R H + +Y + I++ + Sbjct: 297 RLY----REQMAAVEARGLREGARLTYHGR-NVLYPRFVPPAARRTAADEIVYFRDDGRE 351 Query: 187 GIIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM--- 242 + + G+ +R P F+P V A + + Sbjct: 352 RPGIYRVSLAAPAPGSERHEALVARTNAPSRPAFTPAGDLVFTALLPWRNHYYRNDLVML 411 Query: 243 -----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATE 295 D +R AP S G S+ ++I + +E Sbjct: 412 PRGEAAPDGDEPWRRRLTHGLRSAAPDVSPTGDLVAFSLNSKGTRYLEIARLSRDGALSE 471 Query: 296 R---LTNTLFIN-ISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 R + + F S S+SPD ++ + G + V+ +++++D+ A+ Sbjct: 472 RRDLVPSARFEQAYSPSFSPDGKRLAYSVWTAGGYRDIRVVDVATGGFRQVTRDR-ATDM 530 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRK 409 +PVWSP G+ + FT + R + P SP G++L++ Sbjct: 531 NPVWSPDGETLYFTSDRTGIHNVYAYDVSSGALRQVTNVRLGALHPAISPDGKTLVYVGY 590 Query: 410 KDGDTGSKLYSIDLNGRNETLINTP---AYASDPQ 441 G L+++ L+ + P DP Sbjct: 591 TS--RGHDLFAMPLD--PARFLPAPPPSGDRPDPA 621 >gi|237715132|ref|ZP_04545613.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408917|ref|ZP_06085462.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294648224|ref|ZP_06725761.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294810023|ref|ZP_06768697.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444965|gb|EEO50756.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353128|gb|EEZ02223.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636412|gb|EFF54893.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294442869|gb|EFG11662.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1119 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + A RLT I ++++PD + F + Sbjct: 78 AFASDRNGNFDLFIMPADGGAARRLTYHSASEIPSTFTPDGKYVFFSASIQDPASSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + G + S Sbjct: 138 TGAMTELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + P ++P G ++ F ++DG + +Y+ LN Sbjct: 195 TRDIWLYNTQTGKHTNLTNRGGEDRNPVYAPDGNAIYFLSERDGGS-FNVYTFSLN 249 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLTY-HSASEIPSTFTPDGKYVFFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + +G++ ++ +K Sbjct: 126 SIQDPASSALFPTGAMTELYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNRGGEDRNPVYAP 225 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 98/310 (31%), Gaps = 81/310 (26%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM------- 259 +R P ++P+ + + + D VY + K + F++ Sbjct: 211 LTNRGGEDRNPVYAPDGNAIYFLSERDGGSFNVYTFSLNTPQEVKAMTTFKTHPVRFLSV 270 Query: 260 ----------------------------------------------ILAPRFSSNGKRAL 273 + S +GK+ Sbjct: 271 SDKGTLCYTYDGELYTQKSGARPEKVKVELVRDDEQQLATLKFSQGATSASVSPDGKQIA 330 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-- 331 V+ D ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 331 FIVRGD----VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKI 386 Query: 332 ---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + K P +SP G +AF + + V+ + Sbjct: 387 SRKEDPNFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDRN---RLMVLNLKTKK 443 Query: 383 ERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R + + S WSP G+ L F + D S + + G T + Sbjct: 444 VRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGAITNLTNS 502 Query: 435 AYAS-DPQWV 443 Y S P+WV Sbjct: 503 GYISGAPRWV 512 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ D + + K+I N + A F+ + + + + + Sbjct: 321 SVSPDGKQIAFIVRGD------VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + +G++ Sbjct: 432 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + AP W G +++F ++ G Sbjct: 492 QGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK S ++Y V + TE++ Sbjct: 98 AARRLTYHSASEIPSTFTPDGKYVFFSASIQDPASSALFPTGAMTELYKVPVAGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ Sbjct: 158 LGTPAELV--CFDKTGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLTNR 214 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV++P G+ I F ++ G F + + QE + + Sbjct: 215 G-GEDRNPVYAPDGNAIYFLSERDGGSFNVYTFSLNTPQEVKAMTTFKTHPVRF 267 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQIAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERTYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 429 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q A LTN+ +I+ + + D + I+F+++R G Sbjct: 487 GIVSAQGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 >gi|268317858|ref|YP_003291577.1| peptidase S41 [Rhodothermus marinus DSM 4252] gi|262335392|gb|ACY49189.1| peptidase S41 [Rhodothermus marinus DSM 4252] Length = 1067 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P +G++ + S Q D ++ V + +RLT +SPD +I F SDR Sbjct: 23 PAIDPSGQQIVFSYQGD----LWLVPVTGGMAQRLTVHPAYEAYPRWSPDGRRIAFTSDR 78 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI-----AFTKFSGEKFAIGVMK 377 G + L+VM+ GS +R++ A W+ G L+ F + E + Sbjct: 79 YGHDDLFVMELFGSPPRRLTY-HSADDILTDWTRDGRLLFQTRRLFVQVEREAEIHAIPD 137 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--------GDTGSKLYSIDL-NGRNE 428 G+ R+L T SP GR L F R + G L+ DL N Sbjct: 138 TGGTPVRILDATGFQA--TLSPDGRFLAFERGSNATWRQGYRGSADRDLWLFDLQNHTFR 195 Query: 429 TLINTPAYASDPQWVG 444 L + P W G Sbjct: 196 RLTDFDGNDYLPAWAG 211 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 37/245 (15%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P P+ Q++ ++ D + +R+ + PR+S +G+R + Sbjct: 22 YPAIDPSGQQIVFSYQGD------LWLVPVTGGMAQRLTVHPAYEAYPRWSPDGRRIAFT 75 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-----EGKEQLYV 330 + D++ ++L + RLT +I ++ D +++F++ R E + +++ Sbjct: 76 SDRYGHDDLFVMELFGSPPRRLTYHSADDILTDWTRDG-RLLFQTRRLFVQVEREAEIHA 134 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----------IGVMKKDG 380 + G RI +A+ F SP G +AF + S + + + Sbjct: 135 IPDTGGTPVRIL---DATGFQATLSPDGRFLAFERGSNATWRQGYRGSADRDLWLFDLQN 191 Query: 381 SQERLLVE-DSNLQAPTWS-PSGRSLIFSRKKDGDTGSKLYSIDLN------GRNETLIN 432 R L + D N P W+ P R+L+F ++DG LY + LN G E L + Sbjct: 192 HTFRRLTDFDGNDYLPAWAGP--RTLLFISERDGT--YNLYRLPLNEDGTPQGAPEQLTH 247 Query: 433 TPAYA 437 Sbjct: 248 FEGDG 252 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 54/345 (15%) Query: 145 FSSPASWRKIAHTISDD----------IYQSITGEKG-----DFNSRILFVSESVVSGII 189 S A+WR+ +D ++ +T G + + S G Sbjct: 166 RGSNATWRQGYRGSADRDLWLFDLQNHTFRRLTDFDGNDYLPAWAGPRTLLFISERDGTY 225 Query: 190 KNSLCVMDRDGAN---IRYLTPSRDQILFEPRFSPNQQKVAYATY----------DDEDI 236 ++ DG LT + S + + +A+ Sbjct: 226 NLYRLPLNEDGTPQGAPEQLTHFEGDGVRYFTVSADGRTIAFERQTDLYVLTLPEGTPRR 285 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 L + + +R F S S +G+ V+ + + D N T R Sbjct: 286 LEIQIPYDERFDPVERRT-FTSEATEYALSPDGRYVAFVVR--GELFLRRNDPDDNRTVR 342 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK-----------RISQDK 345 LT + + ++ D S +VF SDR G+ LY++++ + R++ D Sbjct: 343 LTRHPWRDREPAWLND-STLVFVSDRAGQYDLYLLRAADAGTSDLFESLTHTVVRLT-DT 400 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE----DSNLQAPTWSPSG 401 +PV +P G + F + G + + + +G + R+ + + WSP Sbjct: 401 PEDEREPVVAPDGRHLVFRRGRGT---LLLARIEGDRLRITRTLLDGWATPEDVAWSPDS 457 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETL--INTPAYASDPQWVG 444 R + +S D D +++Y ++G + + P + P W Sbjct: 458 RWIAYS-LPDLDFNTEVYIQPIDGSHPPINVSQHPRPDTHPVWSP 501 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 104/354 (29%), Gaps = 88/354 (24%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 + + S + + L ++ G + LT PR+SP+ +++ Sbjct: 14 FNPRPFPRYPAIDPSGQQIVFSYQGDLWLVPVTGGMAQRLTV-HPAYEAYPRWSPDGRRI 72 Query: 227 AYATYDDE-----------------------DILRVYLMDTR------------------ 245 A+ + DIL + D R Sbjct: 73 AFTSDRYGHDDLFVMELFGSPPRRLTYHSADDILTDWTRDGRLLFQTRRLFVQVEREAEI 132 Query: 246 -----IDRAPKRIGNFRSMILAPRFSSNGKRALIS----------VQKDEAMDIYSVDLQ 290 P RI + S +G+ + D++ DLQ Sbjct: 133 HAIPDTGGTPVRILDATG--FQATLSPDGRFLAFERGSNATWRQGYRGSADRDLWLFDLQ 190 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG-----SDQKRISQDK 345 ++ RLT+ + +++ ++F S+R+G LY + N ++++ + Sbjct: 191 NHTFRRLTDFDGNDYLPAWA-GPRTLLFISERDGTYNLYRLPLNEDGTPQGAPEQLTHFE 249 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL----------------VED 389 S G IAF + + + V+ R L Sbjct: 250 GDGVRYFTVSADGRTIAFERQTD----LYVLTLPEGTPRRLEIQIPYDERFDPVERRTFT 305 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 S SP GR + F + G+ + D + R L P +P W+ Sbjct: 306 SEATEYALSPDGRYVAFVVR--GELFLRRNDPD-DNRTVRLTRHPWRDREPAWL 356 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 26/220 (11%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + VA+ + + R D R R+ P + ++ + Sbjct: 312 ALSPDGRYVAFVVRGELFLRRNDPDDNRT----VRLTRHPWRDREPAWLND-STLVFVSD 366 Query: 278 KDEAMDIYSVDLQ-----------SNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + D+Y + ++ RLT+T +PD +VF R G+ Sbjct: 367 RAGQYDLYLLRAADAGTSDLFESLTHTVVRLTDTPEDEREPVVAPDGRHLVF---RRGRG 423 Query: 327 QLYVMQSNGSDQKRISQ---DKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQ 382 L + + G D+ RI++ D A+ D WSP IA++ + + DGS Sbjct: 424 TLLLARIEG-DRLRITRTLLDGWATPEDVAWSPDSRWIAYSLPDLDFNTEVYIQPIDGSH 482 Query: 383 ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + V P WSP G L F + ++ Sbjct: 483 PPINVSQHPRPDTHPVWSPDGSKLAFLSPRSSGDVDVWFA 522 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 50/248 (20%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEP--RFSPNQQKVAYATYDDEDILRVYLMDTR 245 + +L + +G +R D +SP+ + +AY+ D + VY+ Sbjct: 420 RGRGTLLLARIEGDRLRITRTLLDGWATPEDVAWSPDSRWIAYSLPDLDFNTEVYIQPID 479 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISV----------------------------- 276 P + P +S +G + Sbjct: 480 GSHPPINVSQHPRPDTHPVWSPDGSKLAFLSPRSSGDVDVWFAWLRRADWERTEEEWEAL 539 Query: 277 -------QKDEAMDIYSVDLQ--SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 ++D +DL+ R+T + S D F ++R G+ Q Sbjct: 540 EKQSDRKRRDTLTGPIQIDLERIHERLRRVTALPGNEAELAVSKDGETFYFVANRGGRTQ 599 Query: 328 -------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 LY ++ +GS+ KR++ + + S G + F + SG+ + + ++G Sbjct: 600 DYEAEVDLYRIRWDGSELKRLT-ENDTDPRQVRLSRDGKYLFFLRPSGQL--VRLNPENG 656 Query: 381 SQERLLVE 388 QE L E Sbjct: 657 RQETLRFE 664 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPS 400 + + P P G I F+ + ++ G + L + P WSP Sbjct: 13 TFNPRPFPRYPAIDPSGQQIVFSYQGD----LWLVPVTGGMAQRLTVHPAYEAYPRWSPD 68 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 GR + F+ + G L+ ++L G + Sbjct: 69 GRRIAFTSDRYGH--DDLFVMELFGSPPRRLT 98 >gi|32564217|ref|NP_871957.1| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] gi|25809201|emb|CAD57688.1| C. elegans protein C31C9.1b, confirmed by transcript evidence [Caenorhabditis elegans] gi|25809224|emb|CAD57698.1| C. elegans protein C31C9.1b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 455 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 81/208 (38%), Gaps = 32/208 (15%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R +R+ + S +G + + + +++Y +D+ ++TN L + Sbjct: 203 RYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQITNELGYD 262 Query: 305 ISASYSPDSSQIVFESDREGK--------------------EQLYVMQSNGSDQKRISQD 344 + ++PD +++F + R +L+++ +G + ++I+ Sbjct: 263 GGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDIDGQNLRKITNL 322 Query: 345 KEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTW- 397 EA++ + + I F+ F++ ++ DG+ + + Q ++ Sbjct: 323 GEANWAPYMLN-DNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQIT-FGQNQFNSFA 380 Query: 398 --SPSGRSLIFSRKKDGDT-GSKLYSID 422 S G+ L++ ++G L+ D Sbjct: 381 MQSYDGKKLVWGSSRNGTMYELNLFIAD 408 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 26/176 (14%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ VD N +RLT++ + SPD ++I F S R G +LY+M +G + +I Sbjct: 196 YDIFKVDRYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQI 255 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEK--------------------FAIGVMKKDGS 381 + + ++P G + F + + ++ DG Sbjct: 256 TNEL-GYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDIDGQ 314 Query: 382 QERLLVEDS-NLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGRNETLIN 432 R + AP + +IFS D G LY ++ +G I Sbjct: 315 NLRKITNLGEANWAPYMLNDNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQIT 370 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 30/217 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +DR G N E SP+ K+A+ + D L +Y+MD + Sbjct: 195 DYDIFKVDRYG-NFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGD-LELYIMDID-GKN 251 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEA--------------------MDIYSVDL 289 +I N F+ +GKR + + + M+++ VD+ Sbjct: 252 LIQITNELGYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDI 311 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ 343 ++TN N + D+ +I+F S+ + G LY++ +G+ ++I+ Sbjct: 312 DGQNLRKITNLGEANWAPYMLNDNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQITF 371 Query: 344 DKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + + S G + + + +G + + + D Sbjct: 372 GQNQFNSFAMQSYDGKKLVWGSSRNGTMYELNLFIAD 408 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 41/282 (14%) Query: 195 VMDRDG----ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRID-- 247 V+ DG AN++ LT FS + K+ D ++Y +D ID Sbjct: 61 VVHFDGETHLANVKQLTFGGMNAEGY--FSFDNSKLTLQATGYGTDCDQIYELDLNIDPR 118 Query: 248 -RAPKRIGNFRSMILAPRF--SSNGKRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFI 303 + +RI F ++ L + + D+ ++ N Sbjct: 119 LQTLRRISTGLGATTCSYFYKEADNNHRLYAGNWWNVKVDNTTDVSKTCPPKQCANPQTD 178 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + + + D ++ + G+ +R++ D + V SP G IAF Sbjct: 179 ELKHLCNTS-----YTWDIFADYDIFKVDRYGNFVQRLT-DSPGYDAEGVVSPDGTKIAF 232 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGS------ 416 T + +M DG + + ++P G+ LIF + + Sbjct: 233 TSIRSGDLELYIMDIDGKNLIQITNELGYDGGSFFTPDGKRLIFRASRPKNETEIAKYKK 292 Query: 417 ------------KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +L+ +D++G+N I A+ W +M Sbjct: 293 LLSYNLVEPIAMELFIVDIDGQNLRKITNLGEAN---WAPYM 331 >gi|332300275|ref|YP_004442196.1| peptidase S41 [Porphyromonas asaccharolytica DSM 20707] gi|332177338|gb|AEE13028.1| peptidase S41 [Porphyromonas asaccharolytica DSM 20707] Length = 1095 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 33/211 (15%) Query: 262 APRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 PR+ S +G + Q D IY VD LT + ++SPD + Sbjct: 30 TPRWLRYAQISPDGNQIAFCYQGD----IYIVDAIGGEARLLTGSDGYESHPTWSPDGKR 85 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------- 364 I F S+R+G +Y M + G D KRI+ S+ ++P G I + Sbjct: 86 IAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHTVECYTPDGRFIIMSESLQQPATSAL 145 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG-RSLI---------FSRKKDGDT 414 SG + ++ DG +L L+A T+S G R + + + Sbjct: 146 NPSGILSQLYMIPVDGGTP-MLYNARPLEAVTFSHRGDRYVAQDIKGFENKWRKHHTSSV 204 Query: 415 GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +Y +D G P P + Sbjct: 205 TRDIYIVDPKTGATTACTLEPGEDLSPVFGP 235 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 109/303 (35%), Gaps = 38/303 (12%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + ++ G + + F+SE S + + + +T R+ + S + Sbjct: 227 EDLSPVFGPDDQTVFFISERGKSNSLN--VWKQRIGEQTAQQVTSFRNHPVRFLSISRSG 284 Query: 224 Q-KVAY----ATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALI 274 + AY T + + + R D+ +R + P SS+GK+ Sbjct: 285 RLCFAYDGDLYTMTEGRSPQKVQITLRTEGPKDKVYRRTASSGGSSFTP--SSDGKQLAF 342 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ D +Y ++ T+R+T + S ++SPDS +V++S R+GK LY Sbjct: 343 IMRGD----VYVTSVEHGTTKRITQSAGAEESVTWSPDSKTLVYDSRRDGKHILYKATIA 398 Query: 335 GS-----------DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 ++ + + + P +SP G LIAF G++ I + + Sbjct: 399 SDKELDFASATIIKEEPLMPECKMEQALPQYSPDGKLIAFV---GDRKRIYTYNVESKKL 455 Query: 384 RLLVEDSN------LQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAY 436 + + + WSP R + F + + + G + Y Sbjct: 456 TQVTSGKDQPEMHGYISYEWSPDSRWIAFGYTPNVHAPFGDVGLVRATGGEVINLTNTGY 515 Query: 437 ASD 439 SD Sbjct: 516 FSD 518 Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 44/236 (18%) Query: 217 PRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 PR+ SP+ ++A+ D +Y++D I + + P +S +GK Sbjct: 31 PRWLRYAQISPDGNQIAFCYQGD-----IYIVD-AIGGEARLLTGSDGYESHPTWSPDGK 84 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVF--------ES- 320 R +D IY++ +R+T+ + Y+PD I+ S Sbjct: 85 RIAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHTVECYTPDGRFIIMSESLQQPATSA 144 Query: 321 -DREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA------ 372 + G QLY++ +G +S +GD + + F Sbjct: 145 LNPSGILSQLYMIPVDGGTP---MLYNARPLEAVTFSHRGDR--YVAQDIKGFENKWRKH 199 Query: 373 --------IGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 I ++ +E +P + P +++ F ++ ++ Sbjct: 200 HTSSVTRDIYIVDPKTGATTACTLEPGEDLSPVFGPDDQTVFFISERGKSNSLNVW 255 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 42/335 (12%), Positives = 105/335 (31%), Gaps = 88/335 (26%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + ++D G R L D P +SP+ +++A+ + D +Y M + + Sbjct: 50 YQGDIYIVDAIGGEAR-LLTGSDGYESHPTWSPDGKRIAFMSNRDGH-RSIYTM-SALGG 106 Query: 249 APKRIGNFRSMILAP-RFSSNGKRALIS----------VQKDEAM-DIYSVDLQSNAT-- 294 KRI + ++ +G+ ++S + + +Y + + Sbjct: 107 DVKRITHHSGNSHTVECYTPDGRFIIMSESLQQPATSALNPSGILSQLYMIPVDGGTPML 166 Query: 295 -----------------------------------ERLTNTLFI---------------- 303 +T ++I Sbjct: 167 YNARPLEAVTFSHRGDRYVAQDIKGFENKWRKHHTSSVTRDIYIVDPKTGATTACTLEPG 226 Query: 304 -NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSP---- 356 ++S + PD + F S+R L V + +Q ++++ + S Sbjct: 227 EDLSPVFGPDDQTVFFISERGKSNSLNVWKQRIGEQTAQQVTSFRNHPVRFLSISRSGRL 286 Query: 357 ----QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSP--SGRSLIFSRKK 410 GDL T+ + ++ +G ++++ ++ +++P G+ L F + Sbjct: 287 CFAYDGDLYTMTEGRSPQKVQITLRTEGPKDKVYRRTASSGGSSFTPSSDGKQLAFIMR- 345 Query: 411 DGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +Y + +G + + + W Sbjct: 346 -----GDVYVTSVEHGTTKRITQSAGAEESVTWSP 375 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 ++Q+ SP G+ IAF I ++ G + RLL D PTWSP Sbjct: 26 VAQETPRWLRYAQISPDGNQIAFCYQGD----IYIVDAIGGEARLLTGSDGYESHPTWSP 81 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G+ + F +DG +Y++ G + I + S Sbjct: 82 DGKRIAFMSNRDGHR--SIYTMSALGGDVKRITHHSGNSH 119 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 63/225 (28%), Gaps = 15/225 (6%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + SP S R IA + +++ + ++ + + VM+ N Sbjct: 472 SYEWSPDS-RWIAFGYTPNVHAPFGDVGLVRATGGEVINLTNTGYFSDLTGWVME---GN 527 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 T R + + A+ + + + M R G + Sbjct: 528 AILFTSDRYGMRNHASW--GSMSDAFLVFLNRKAYEKFSMTPEERDLYDRAGLDTLQYGS 585 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATE--RLTNTLFINISASYSPDSSQIVFES 320 ++ K + V+++ RLT A D + + S Sbjct: 586 DPVPTD-------SAKKDETKPIIVEVKGIEDRIVRLTPNSSDLADAYVDADGKNLYYLS 638 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 EG L+ + + Q + +P+GD I Sbjct: 639 AFEGGYNLWQTDLREGNTSMLRQLDLSGSAYMRPTPKGDKIFVIS 683 >gi|328554924|gb|AEB25416.1| YuxL [Bacillus amyloliquefaciens TA208] Length = 694 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 116/316 (36%), Gaps = 72/316 (22%) Query: 176 RILFVSESVVSGIIKNSLCVMDRD---GANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 R +V V S +M D G + + D PR+SP+ +++A+ + Sbjct: 61 RAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTF--GDNKNSSPRWSPDGRRLAFVSDR 118 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--------------- 277 ++ + ++Y++D A + + P ++ +G+ L+SV Sbjct: 119 EDGVPQLYIIDAAGGEAERAADIPWG-VADPIWAPDGRSVLVSVSLTSAERADEKEKKKQ 177 Query: 278 --------------KDE-------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +D + + L++ ++LT+ + A++SPD Q+ Sbjct: 178 DEYEPVNIQSLTYKRDGKGLLNGSWTQLVLIHLETGEIQQLTDHEADHFDAAFSPDGKQL 237 Query: 317 VFESD-----REGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 F ++ GK + +Y+M D K+I+ S+ V+SP G IA E Sbjct: 238 AFTANLCEPGDAGKPRDVYLMNLADGDLKQITP-HSGSFGSCVFSPDGSYIALLGHENEF 296 Query: 371 FAIGVMKK---DGSQERL--LVE----------------DSNLQAPTWSPSGRSLIFSRK 409 ++K D ERL L + P W+ G+ Sbjct: 297 RNATLVKAWLYDVKNERLSCLTDMLDVHLSDALIADSLIGGVTPRPVWTNDGQGFYVLGS 356 Query: 410 KDGDTGSKLYSIDLNG 425 + G TG +Y I ++G Sbjct: 357 EQGSTG--IYYISIDG 370 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 98/268 (36%), Gaps = 54/268 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM----ILAPRFSSNG 269 + +P+++P+ ++ AY D Y + N + +PR+S +G Sbjct: 50 VTDPQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPDG 109 Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV----------- 317 +R + D +Y +D ER + + ++PD ++ Sbjct: 110 RRLAFVSDREDGVPQLYIIDAAGGEAERAADIPWGVADPIWAPDGRSVLVSVSLTSAERA 169 Query: 318 ------------------FESDREGKE-------QLYVMQSNGSDQKRISQDKEASYFDP 352 R+GK QL ++ + ++++ D EA +FD Sbjct: 170 DEKEKKKQDEYEPVNIQSLTYKRDGKGLLNGSWTQLVLIHLETGEIQQLT-DHEADHFDA 228 Query: 353 VWSPQGDLIAFTKF------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLI 405 +SP G +AFT +G+ + +M DG +++ + + +SP G + Sbjct: 229 AFSPDGKQLAFTANLCEPGDAGKPRDVYLMNLADGDLKQITPHSGSFGSCVFSPDGSYIA 288 Query: 406 FSRKKDGDTGSKL---YSIDLNGRNETL 430 ++ + L + D+ +NE L Sbjct: 289 LLGHENEFRNATLVKAWLYDV--KNERL 314 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 9/105 (8%) Query: 348 SYFDPVWSPQGDLIAFTK------FSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPS 400 S DP ++P G A+ + AI V + D+ +P WSP Sbjct: 49 SVTDPQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPD 108 Query: 401 GRSLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYASDPQWVG 444 GR L F ++ D +LY ID G E + P +DP W Sbjct: 109 GRRLAFVSDRE-DGVPQLYIIDAAGGEAERAADIPWGVADPIWAP 152 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 27/167 (16%) Query: 158 ISDDIYQSITGEKGDFNSRIL-----FVSESVVSGIIKNSLCV--MDRDGANIRYLTPSR 210 ++D + IT G F S + +++ +N+ V D N R + Sbjct: 260 LADGDLKQITPHSGSFGSCVFSPDGSYIALLGHENEFRNATLVKAWLYDVKNERLSCLTD 319 Query: 211 ----------------DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + P ++ + Q Y ++ +Y + P R+ Sbjct: 320 MLDVHLSDALIADSLIGGVTPRPVWTNDGQG-FYVLGSEQGSTGIYYISIDGLVYPIRLE 378 Query: 255 NFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNT 300 A F + K + V+ + ++YS+ L+ ++LTN Sbjct: 379 EEYVNGFA--FHPDQKSCIAVIVKPERPSELYSISLEDGEEKQLTNN 423 >gi|254881010|ref|ZP_05253720.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640017|ref|ZP_07994744.1| peptidase/protease [Bacteroides sp. 3_1_40A] gi|254833803|gb|EET14112.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388295|gb|EFV69147.1| peptidase/protease [Bacteroides sp. 3_1_40A] Length = 1084 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 119/334 (35%), Gaps = 41/334 (12%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ K + R ++ G + F S S Sbjct: 200 LYDSENGKH---TNLTAHAGEDRNPVFAPDGQTVYFLSERDGGTFNVYSFPISSPQSLKT 256 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 V +R+L+ + L ++ + + Y + +V + R D+ Sbjct: 257 -----VTHFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDIIRDDQN 306 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 NF + + S +GK+ V+ +++ N T+++T+T ++ Sbjct: 307 TIADLNFSNGATSATVSPDGKQVAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTF 362 Query: 310 SPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD+ + + S+R G +LY+ + +++ + + P +SP G Sbjct: 363 SPDNRTLAYASERNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSPDG 422 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKK 410 +AF + + V+ + + R + + S + +WSP G+ L F + Sbjct: 423 KELAFIEDRN---RLMVINLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNR 479 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 D S + + G + Y + P+WV Sbjct: 480 H-DPYSDIGMVSAQGGKIINLTNSGYTSGSPRWV 512 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT S +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPANGGTATQLTTQASYECSPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ D Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYDSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S +P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PANGGTATQLTTQASYECSPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F ++DG T +YS ++ Sbjct: 201 YDSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERDGGT-FNVYSFPIS 249 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQVAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVINLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVSA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPANGGTATQLTTQAS-YECSPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYDSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ G F + Q V + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERDGGTFNVYSFPISSPQSLKTVTHFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + +P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPANGGTATQLTTQASYECSPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 119/353 (33%), Gaps = 47/353 (13%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D + Sbjct: 320 ATVSPDGKQVAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATAI-------EEEVLLPSDKTERTYPQFSPDGKELAFIE 429 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRA---LISVQKDEAMDIYS 286 D ++ + L ++ + F +S +GK I + D DI Sbjct: 430 -DRNRLMVINLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGM 488 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVMQSNG 335 V Q LTN+ + + S + D + I+F ++R G L M + Sbjct: 489 VSAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFMNQDA 548 Query: 336 SDQKRISQDKE----------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 D+ R+S++ + + + + + + Sbjct: 549 YDKFRLSKEDYELQKELEKEQKNTTETKKNDKKKGDNKEKSEEKKEEKVKDIVVELNNIE 608 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 609 DRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLH 659 >gi|237724368|ref|ZP_04554849.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437237|gb|EEO47314.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 1084 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 107/270 (39%), Gaps = 33/270 (12%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V + +R+L+ + L ++ + + Y + +V + TR D+ Sbjct: 256 TVTNFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDITRDDQNTIAD 310 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF + + S +GK+ V+ +++ N T+++T+T ++SPD+ Sbjct: 311 LNFSNGATSATVSPDGKQIAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTFSPDN 366 Query: 314 SQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + + S+R G +LY+ + +++ + + P +SP G +A Sbjct: 367 RTLAYASERNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELA 426 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDT 414 F + + V+ + + R + + S + +WSP G+ L F + D Sbjct: 427 FIEDRN---RLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRH-DP 482 Query: 415 GSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 S + ++ G + Y + P+WV Sbjct: 483 YSDIGMVNAQGGKIINLTNSGYTSGSPRWV 512 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQIAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVNA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT + +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ + Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYNSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PSNGGTATQLTTQASYECNPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F +++G T +YS ++ Sbjct: 201 YNSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERNGGT-FNVYSFPIS 249 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 88/254 (34%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPSNGGTATQLTTQAS-YECNPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYNSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ +G F + Q V + + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERNGGTFNVYSFPISSPQSLETVTNFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 123/357 (34%), Gaps = 55/357 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D + Sbjct: 320 ATVSPDGKQIAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATTI-------EEEVLLPSDKTERTYPQFSPDGKELAFI- 428 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAM 282 ED R+ +++ + +++ + +S +GK I + D Sbjct: 429 ---EDRNRLMVLNLET-KKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYS 484 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVM 331 DI V+ Q LTN+ + + S + D + I+F ++R G L M Sbjct: 485 DIGMVNAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFM 544 Query: 332 QSNGSDQKRISQDKE----------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + D+ R+S++ + + + + + Sbjct: 545 NQDAYDKFRLSKEDYELQKELEKEQKNTTETKKNGKKKGDNKEKSEEKKEEKVKDIVVEL 604 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 605 NNIEDRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLH 659 >gi|328913235|gb|AEB64831.1| hypothetical protein LL3_03301 [Bacillus amyloliquefaciens LL3] Length = 694 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 116/316 (36%), Gaps = 72/316 (22%) Query: 176 RILFVSESVVSGIIKNSLCVMDRD---GANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 R +V V S +M D G + + D PR+SP+ +++A+ + Sbjct: 61 RAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTF--GDNKNSSPRWSPDGRRLAFVSDR 118 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--------------- 277 ++ + ++Y++D A + + P ++ +G+ L+SV Sbjct: 119 EDGVPQLYIIDAAGGEAERAADIPWG-VADPIWAPDGRSVLVSVSLTSAERADEKEKKKQ 177 Query: 278 --------------KDE-------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +D + + L++ ++LT+ + A++SPD Q+ Sbjct: 178 DEYEPVNIQSLTYKRDGKGLLNGSWTQLVLIHLETGEIQQLTDHEADHFDAAFSPDGKQL 237 Query: 317 VFESD-----REGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 F ++ GK + +Y+M D K+I+ S+ V+SP G IA E Sbjct: 238 AFTANLCEPGDAGKPRDVYLMNLADGDLKQITP-HSGSFGSCVFSPDGSYIALLGHENEF 296 Query: 371 FAIGVMKK---DGSQERL--LVE----------------DSNLQAPTWSPSGRSLIFSRK 409 ++K D ERL L + P W+ G+ Sbjct: 297 RNATLVKAWLYDVKNERLSCLTDMLDVHLSDALIADSLIGGVTPRPVWTNDGQGFYVLGS 356 Query: 410 KDGDTGSKLYSIDLNG 425 + G TG +Y I ++G Sbjct: 357 EQGSTG--IYYISIDG 370 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 98/268 (36%), Gaps = 54/268 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM----ILAPRFSSNG 269 + +P+++P+ ++ AY D Y + N + +PR+S +G Sbjct: 50 VTDPQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPDG 109 Query: 270 KRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV----------- 317 +R + D +Y +D ER + + ++PD ++ Sbjct: 110 RRLAFVSDREDGVPQLYIIDAAGGEAERAADIPWGVADPIWAPDGRSVLVSVSLTSAERA 169 Query: 318 ------------------FESDREGKE-------QLYVMQSNGSDQKRISQDKEASYFDP 352 R+GK QL ++ + ++++ D EA +FD Sbjct: 170 DEKEKKKQDEYEPVNIQSLTYKRDGKGLLNGSWTQLVLIHLETGEIQQLT-DHEADHFDA 228 Query: 353 VWSPQGDLIAFTKF------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLI 405 +SP G +AFT +G+ + +M DG +++ + + +SP G + Sbjct: 229 AFSPDGKQLAFTANLCEPGDAGKPRDVYLMNLADGDLKQITPHSGSFGSCVFSPDGSYIA 288 Query: 406 FSRKKDGDTGSKL---YSIDLNGRNETL 430 ++ + L + D+ +NE L Sbjct: 289 LLGHENEFRNATLVKAWLYDV--KNERL 314 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 9/105 (8%) Query: 348 SYFDPVWSPQGDLIAFTK------FSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPS 400 S DP ++P G A+ + AI V + D+ +P WSP Sbjct: 49 SVTDPQYAPDGRRAAYVRTKVNDKRDSYSSAIMVYDTESGTSNPWTFGDNKNSSPRWSPD 108 Query: 401 GRSLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYASDPQWVG 444 GR L F ++ D +LY ID G E + P +DP W Sbjct: 109 GRRLAFVSDRE-DGVPQLYIIDAAGGEAERAADIPWGVADPIWAP 152 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 27/167 (16%) Query: 158 ISDDIYQSITGEKGDFNSRIL-----FVSESVVSGIIKNSLCV--MDRDGANIRYLTPSR 210 ++D + IT G F S + +++ +N+ V D N R + Sbjct: 260 LADGDLKQITPHSGSFGSCVFSPDGSYIALLGHENEFRNATLVKAWLYDVKNERLSCLTD 319 Query: 211 ----------------DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + P ++ + Q Y ++ +Y + P R+ Sbjct: 320 MLDVHLSDALIADSLIGGVTPRPVWTNDGQG-FYVLGSEQGSTGIYYISIDGLVYPIRLE 378 Query: 255 NFRSMILAPRFSSNGKR-ALISVQKDEAMDIYSVDLQSNATERLTNT 300 A F + K + V+ + ++YS+ L+ ++LTN Sbjct: 379 EEYVNGFA--FHPDQKSCIAVIVKPERPSELYSISLEDGEEKQLTNN 423 >gi|298251615|ref|ZP_06975418.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297546207|gb|EFH80075.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 1223 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 99/268 (36%), Gaps = 22/268 (8%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 + S +++ + D ++ + +SP+ Q +A A +D ++L Sbjct: 776 RLASASWDHTIKLWDVASGDVIQTLMGHTDRVQTVAWSPDGQTLASAAFDH----TIWLW 831 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 D + ++ + F N +R L S D M ++ D ++ +E++ + Sbjct: 832 DMEQRTCRMVLQGHTDLVFSLAFMPNSRRLL-SGSVDGTMQVW--DTENGQSEQILQSYA 888 Query: 303 IN-ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 I+ ++SPD ++I S + + + +G R+ Q F WSP G + Sbjct: 889 ISLYDIAWSPDGTRIASGSS---DGLVMIWEVDGLTPPRLLQGHRHLVFGVEWSPDGRRL 945 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-----WSPSGRSLIFSRKKDGDTGS 416 A G AI V + + ++ D + + WSP G+ L + Sbjct: 946 A---SGGWDNAIRVWDTTTGESQQIMRDPDDAYTSFYGIAWSPDGQHLACGTYR---PEV 999 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 +++ + R PA A W Sbjct: 1000 QMWEVSTGTRQWMTRQQPASARRVAWSP 1027 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 112/303 (36%), Gaps = 38/303 (12%) Query: 128 FRLWDVKDR---KQIIGKKFFSSPASWRKIAHTISDDIY----------QSITGEKGDFN 174 +LWDV + ++G +W T++ + Q + Sbjct: 786 IKLWDVASGDVIQTLMGHTDRVQTVAWSPDGQTLASAAFDHTIWLWDMEQRTCRMVLQGH 845 Query: 175 SRILFV------SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 + ++F S ++SG + ++ V D + + S L++ +SP+ ++A Sbjct: 846 TDLVFSLAFMPNSRRLLSGSVDGTMQVWDTENGQSEQILQSYAISLYDIAWSPDGTRIAS 905 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + D V + + P+ + R ++ +S +G+R I D Sbjct: 906 GSSDG----LVMIWEVDGLTPPRLLQGHRHLVFGVEWSPDGRRLA---SGGWDNAIRVWD 958 Query: 289 LQSNATERLTNTLFINISAS----YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + ++++ ++ +SPD + + R ++ + + + ++ +++ Sbjct: 959 TTTGESQQIMRDPDDAYTSFYGIAWSPDGQHLACGTYR---PEVQMWEVSTGTRQWMTRQ 1015 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLV-EDSNLQAPTWSPSGR 402 + AS WSP G +A +G+ I + DG R L S + WS G+ Sbjct: 1016 QPASARRVAWSPDGTRLA---SAGDDGLISLWNPSDGRWLRQLRGHLSKVNDIAWSRDGK 1072 Query: 403 SLI 405 L Sbjct: 1073 WLA 1075 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 24/234 (10%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ ++A A++D + L D + + + +S +G+ S Sbjct: 769 AFSPDGSRLASASWDH----TIKLWDVASGDVIQTLMGHTDRVQTVAWSPDGQTLA-SAA 823 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 D + ++ ++ ++ L + S ++ P+S +++ S +G Q++ + Sbjct: 824 FDHTIWLWDMEQRTCRMV-LQGHTDLVFSLAFMPNSRRLLSGS-VDGTMQVW--DTENGQ 879 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLV-EDSNLQAP 395 ++I Q S +D WSP G IA G + + + DG + RLL + Sbjct: 880 SEQILQSYAISLYDIAWSPDGTRIASGSSDG---LVMIWEVDGLTPPRLLQGHRHLVFGV 936 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYASDP----QWVG 444 WSP GR L G + + D G ++ ++ P A W Sbjct: 937 EWSPDGRRLA-----SGGWDNAIRVWDTTTGESQQIMRDPDDAYTSFYGIAWSP 985 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 105/325 (32%), Gaps = 36/325 (11%) Query: 121 KDRLRVEFRLWDVKDRK--QIIGKKFFSS-------PASWRKIAHTISDDIY-----QSI 166 + ++WD ++ + QI+ + + S P R IA SD + + Sbjct: 863 SGSVDGTMQVWDTENGQSEQIL-QSYAISLYDIAWSPDGTR-IASGSSDGLVMIWEVDGL 920 Query: 167 TGEKGDFNSRILFVS-------ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL---FE 216 T + R L + SG N++ V D + + D + Sbjct: 921 TPPRLLQGHRHLVFGVEWSPDGRRLASGGWDNAIRVWDTTTGESQQIMRDPDDAYTSFYG 980 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 +SP+ Q +A TY E + TR ++ + R + +S +G R S Sbjct: 981 IAWSPDGQHLACGTYRPEVQMWEVSTGTRQWMTRQQPASARRV----AWSPDGTRLA-SA 1035 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D + +++ +L L ++S D + +++V + + Sbjct: 1036 GDDGLISLWN-PSDGRWLRQLRGHLSKVNDIAWSRDGKWLASGGGSRESGEVFVWEIHSG 1094 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 ++ R+ + W G ++ G + + R +Q Sbjct: 1095 ERVRVLPRHAGIIYALAWGQTGAILVSGSSDGMLRWWDRHSGECVRVRQ-AHQGTVQRLQ 1153 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSI 421 SP G+ L D L+ + Sbjct: 1154 VSPDGKWLA---SCGDDGAIHLWDL 1175 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 90/279 (32%), Gaps = 32/279 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + R+WD + ++ P DD Y S G + + Sbjct: 943 RRLASGGWDNAIRVWDTTTGE---SQQIMRDP-----------DDAYTSFYGIAWSPDGQ 988 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 L G + + + + +++T + +SP+ ++A D Sbjct: 989 HLAC------GTYRPEVQMWEVSTGTRQWMTRQQPASARRVAWSPDGTRLA----SAGDD 1038 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + L + R +++ S + +S +GK E+ +++ ++ S R Sbjct: 1039 GLISLWNPSDGRWLRQLRGHLSKVNDIAWSRDGKWLASGGGSRESGEVFVWEIHSGERVR 1098 Query: 297 -LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 L I + ++ + +V S L + + R+ Q + + S Sbjct: 1099 VLPRHAGIIYALAWGQTGAILVSGSS---DGMLRWWDRHSGECVRVRQAHQGTVQRLQVS 1155 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQ 393 P G +A G+ AI + + R L D + Sbjct: 1156 PDGKWLASC---GDDGAIHLWDLESGNLLRTLQRDRPYE 1191 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 23/226 (10%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 +G + +CV D + + + I+ FSP+ +A +YD V + Sbjct: 612 AGSRRGEICVW--DQQTLHRVWRAHSDIVRSLSFSPDGHFLASGSYDG----MVNVWGVE 665 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +G+ + I FS +G S D + ++ D ++ A Sbjct: 666 HGALL-WLGSHTANISGLAFSPDGSLLA-SGGIDATVRLW--DRKTGALLETLPHPHAVF 721 Query: 306 SASYSPDSSQIV---FESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLI 361 + ++SPD + F +G+ +L+ + + + + +SP G + Sbjct: 722 TLAWSPDGHLLASFGF----DGQIRLWKRRQSETTTCVACLSGHTNCGMGLAFSPDGSRL 777 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 A + I + + +Q WSP G++L Sbjct: 778 ASASWD---HTIKLWDVASGDVIQTLMGHTDRVQTVAWSPDGQTLA 820 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 13/149 (8%) Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 T+T S + S D S R ++ V R+ + +SP Sbjct: 591 WTSTFGAAWSVAISHDGRYHAAGSRRG---EICVWDQQT--LHRVWRAHSDIVRSLSFSP 645 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-DTG 415 G +A + G GV G+ L +N+ +SP G L G D Sbjct: 646 DGHFLASGSYDGMVNVWGVEH--GALLWLGSHTANISGLAFSPDGSLLA----SGGIDAT 699 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVG 444 +L+ G + P W Sbjct: 700 VRLWD-RKTGALLETLPHPHAVFTLAWSP 727 >gi|237709151|ref|ZP_04539632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456847|gb|EEO62568.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1084 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 107/270 (39%), Gaps = 33/270 (12%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V + +R+L+ + L ++ + + Y + +V + TR D+ Sbjct: 256 TVTNFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDITRDDQNTIAD 310 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF + + S +GK+ V+ +++ N T+++T+T ++SPD+ Sbjct: 311 LNFSNGATSATVSPDGKQIAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTFSPDN 366 Query: 314 SQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + + S+R G +LY+ + +++ + + P +SP G +A Sbjct: 367 RTLAYASERNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELA 426 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDT 414 F + + V+ + + R + + S + +WSP G+ L F + D Sbjct: 427 FIEDRN---RLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRH-DP 482 Query: 415 GSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 S + ++ G + Y + P+WV Sbjct: 483 YSDIGMVNAQGGKIINLTNSGYTSGSPRWV 512 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQIAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVNA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT + +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ + Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYNSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PSNGGTATQLTTQASYECNPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F +++G T +YS ++ Sbjct: 201 YNSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERNGGT-FNVYSFPIS 249 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 88/254 (34%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPSNGGTATQLTTQAS-YECNPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYNSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ +G F + Q V + + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERNGGTFNVYSFPISSPQSLETVTNFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 126/367 (34%), Gaps = 57/367 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D + Sbjct: 320 ATVSPDGKQIAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATTI-------EEEVLLPSDKTERTYPQFSPDGKELAFI- 428 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAM 282 ED R+ +++ + +++ + +S +GK I + D Sbjct: 429 ---EDRNRLMVLNLET-KKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYS 484 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVM 331 DI V+ Q LTN+ + + S + D + I+F ++R G L M Sbjct: 485 DIGMVNAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFM 544 Query: 332 QSNGSDQKRISQDKE----------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + D+ R+S++ + + + + + Sbjct: 545 NQDAYDKFRLSKEDYELQKELEKEQKNTTETKKNGKKKGDNKEKSEEKKEEKVKDIVVEL 604 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--T 433 + RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 605 NNIEDRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLHKMD 662 Query: 434 PAYASDP 440 +A+ Sbjct: 663 AGWANMG 669 >gi|218921792|emb|CAW30777.1| P52CeGA [Caenorhabditis elegans] Length = 460 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 81/208 (38%), Gaps = 32/208 (15%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R +R+ + S +G + + + +++Y +D+ ++TN L + Sbjct: 190 RYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQITNELGYD 249 Query: 305 ISASYSPDSSQIVFESDREGK--------------------EQLYVMQSNGSDQKRISQD 344 + ++PD +++F + R +L+++ +G + ++I+ Sbjct: 250 GGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDIDGQNLRKITNL 309 Query: 345 KEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQERLLVEDSNLQAPTW- 397 EA++ + + I F+ F++ ++ DG+ + + Q ++ Sbjct: 310 GEANWAPYMLN-DNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQIT-FGQNQFNSFA 367 Query: 398 --SPSGRSLIFSRKKDGDT-GSKLYSID 422 S G+ L++ ++G L+ D Sbjct: 368 MQSYDGKKLVWGSSRNGTMYELNLFIAD 395 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 26/176 (14%) Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ VD N +RLT++ + SPD ++I F S R G +LY+M +G + +I Sbjct: 183 YDIFKVDRYGNFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGDLELYIMDIDGKNLIQI 242 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEK--------------------FAIGVMKKDGS 381 + + ++P G + F + + ++ DG Sbjct: 243 TNEL-GYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDIDGQ 301 Query: 382 QERLLVEDS-NLQAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGRNETLIN 432 R + AP + +IFS D G LY ++ +G I Sbjct: 302 NLRKITNLGEANWAPYMLNDNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQIT 357 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 30/217 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + +DR G N E SP+ K+A+ + D L +Y+MD + Sbjct: 182 DYDIFKVDRYG-NFVQRLTDSPGYDAEGVVSPDGTKIAFTSIRSGD-LELYIMDID-GKN 238 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEA--------------------MDIYSVDL 289 +I N F+ +GKR + + + M+++ VD+ Sbjct: 239 LIQITNELGYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKLLSYNLVEPIAMELFIVDI 298 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDRE------GKEQLYVMQSNGSDQKRISQ 343 ++TN N + D+ +I+F S+ + G LY++ +G+ ++I+ Sbjct: 299 DGQNLRKITNLGEANWAPYMLNDNKRIIFSSNYDTAANGFGAFSLYMVNDDGTGLQQITF 358 Query: 344 DKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + + S G + + + +G + + + D Sbjct: 359 GQNQFNSFAMQSYDGKKLVWGSSRNGTMYELNLFIAD 395 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 93/281 (33%), Gaps = 41/281 (14%) Query: 196 MDRDG----ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRID--- 247 + DG AN++ LT FS + K+ D ++Y +D ID Sbjct: 49 VHFDGETHLANVKQLTFGGMNAEGY--FSFDNSKLTLQATGYGTDCDQIYELDLNIDPRL 106 Query: 248 RAPKRIGNFRSMILAPRF--SSNGKRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFIN 304 + +RI F ++ L + + D+ ++ N Sbjct: 107 QTLRRISTGLGATTCSYFYKEADNNHRLYAGNWWNVKVDNTTDVSKTCPPKQCANPQTDE 166 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 + + + D ++ + G+ +R++ D + V SP G IAFT Sbjct: 167 LKHLCNTS-----YTWDIFADYDIFKVDRYGNFVQRLT-DSPGYDAEGVVSPDGTKIAFT 220 Query: 365 KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGS------- 416 + +M DG + + ++P G+ LIF + + Sbjct: 221 SIRSGDLELYIMDIDGKNLIQITNELGYDGGSFFTPDGKRLIFRASRPKNETEIAKYKKL 280 Query: 417 -----------KLYSIDLNGRNETLINTPAYASDPQWVGFM 446 +L+ +D++G+N I A+ W +M Sbjct: 281 LSYNLVEPIAMELFIVDIDGQNLRKITNLGEAN---WAPYM 318 >gi|224537071|ref|ZP_03677610.1| hypothetical protein BACCELL_01948 [Bacteroides cellulosilyticus DSM 14838] gi|224521298|gb|EEF90403.1| hypothetical protein BACCELL_01948 [Bacteroides cellulosilyticus DSM 14838] Length = 1082 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 140/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R EFR W + + S I + ++ DI+ G+ F S Sbjct: 176 KRLAYNRTMREFRTWKYYKGGMADDVWIYDPAKKSVENITNNVAQDIFPMWIGDDIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + S + I+FE N + Sbjct: 236 DRDRTMNIFVYNTKTKQTSKVTNFTEYDVKFPSASGNTIVFE-----NGGYIYKMDAATR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + I N + A S +G+R +++ + +++++ Sbjct: 291 QPEKVNISLASDNIYARSAIKNGAKYLTAASASPDGERVVVTARG----EVFNLPSTKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T A +SPD I + SD G+ +LY+ + + +++++ + Sbjct: 347 TKNITRTPGAHERDAQWSPDGKCIAYISDATGETELYLQDAVEGNPVQLTKNNDTYIRSF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q +L++D Q T+SP + L ++R Sbjct: 407 EWSPDSKKIVYTDRQN---RINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDA 463 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + + +Y D+ G+ E + +P +++D +++ F Sbjct: 464 DNEI-TVVYVYDIAGKKEYPVTDKWYNSSSPVFSTDGKYLIF 504 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V + +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYRVPVTGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y + + G + +R++ D P W+P G I + + F + Sbjct: 90 VYTIPAAGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGFAGKLY 149 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + ++G + L E ++SP G+ L ++R G ++ D Sbjct: 150 SVNQEGGMPEIIPLPEGGFC---SYSPDGKRLAYNRTMREFRTWKYYKGGMADDVWIYDP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 207 AKKSVENITNNVAQDIFPMWIG 228 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 13/220 (5%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-MIL 261 R + + L SP+ ++V + K I Sbjct: 306 ARSAIKNGAKYLTAASASPDGERVVVTARGE------VFNLPSTKGVTKNITRTPGAHER 359 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFES 320 ++S +GK ++Y D +LT N S +SPDS +IV+ Sbjct: 360 DAQWSPDGKCIAYISDATGETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSKKIVYT- 418 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKD 379 DR+ ++ ++ + QD D +SP + +T+ + + + V Sbjct: 419 DRQ--NRINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEITVVYVYDIA 476 Query: 380 GSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 G +E + + N +P +S G+ LIFS +D + Sbjct: 477 GKKEYPVTDKWYNSSSPVFSTDGKYLIFSSARDFNPTYGW 516 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 85/246 (34%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N ++ ++ D+ RV + +R+ + + PRFS +GK + Q D Sbjct: 34 NGNEIVFSY--AGDLYRVPV----TGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGN 87 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y++ +RLT + L + +++PD QI++ + +G + Sbjct: 88 TEVYTIPAAGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGFAGK 147 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVM 376 LY + G + I + +SP G +A+ + G + + Sbjct: 148 LYSVNQEGGMPEIIPLPEGGF---CSYSPDGKRLAYNRTMREFRTWKYYKGGMADDVWIY 204 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + P W G + F +D +Y+ ++ T Sbjct: 205 DPAKKSVENITNNVAQDIFPMWI--GDDIFFLSDRDRTMNIFVYNTKTKQTSKVTNFTEY 262 Query: 436 YASDPQ 441 P Sbjct: 263 DVKFPS 268 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 95/268 (35%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY + P+ Sbjct: 45 DLYRVPVTGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTI-PAAGGEPQ 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 R+ + ++ +GK+ + + A +YSV+ + E + Sbjct: 102 RLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGFAGKLYSVNQEGGMPEII 161 Query: 298 TNTLFINISASYSPDSSQIVFESD----REGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD ++ + R K + +++ + I+ + Sbjct: 162 PLPEG--GFCSYSPDGKRLAYNRTMREFRTWKYYKGGMADDVWIYDPAKKSVENITNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I V Q + + +++ P+ S G ++ Sbjct: 220 QDIF-PMW--IGDDIFFLSDRDRTMNIFVYNTKTKQTSKVTNFTEYDVKFPSAS--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAATRQPEKVN 296 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 81/215 (37%), Gaps = 9/215 (4%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGII--KNSLCVMDRDGANIRYLTPSRDQILF 215 SD+IY + G S ++ + + + + +T + Sbjct: 300 ASDNIYARSAIKNGAKYLTAASASPDGERVVVTARGEVFNLPSTKGVTKNITRTPGAHER 359 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 + ++SP+ + +AY + D +YL D + N + I + +S + K+ + + Sbjct: 360 DAQWSPDGKCIAYIS-DATGETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSKKIVYT 418 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGK-EQLYVMQS 333 D I +D+ S L ++SPDS + + D + + +YV Sbjct: 419 ---DRQNRINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEITVVYVYDI 475 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 G + ++ DK + PV+S G + F+ Sbjct: 476 AGKKEYPVT-DKWYNSSSPVFSTDGKYLIFSSARD 509 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA+ L +G+ R+ V R ++++ K + K +P + ++ Sbjct: 313 GAKYLTAASASPDGE-RVVVTARGEVFNLPSTKGVT-KNITRTPGA------------HE 358 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D I ++S++ + L + D N LT + D + +SP+ + Sbjct: 359 RDAQWSPDGKC-IAYISDATG----ETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+ Y + R+ L+D + + + FS + K + D + + Sbjct: 414 KIVYTDRQN----RINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEITV 469 Query: 285 -YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 Y D+ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYDIAGKKEYPVTDKWYNSSSPVFSTDGKYLIFSSARDFNP 512 >gi|150003761|ref|YP_001298505.1| putative peptidase/protease family protein [Bacteroides vulgatus ATCC 8482] gi|149932185|gb|ABR38883.1| putative peptidase/protease family protein [Bacteroides vulgatus ATCC 8482] Length = 1084 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 119/334 (35%), Gaps = 41/334 (12%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ K + R ++ G + F S S Sbjct: 200 LYDSENGKH---TNLTAHAGEDRNPVFAPDGQTVYFLSERDGSTFNVYSFPISSPQSLKT 256 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 V +R+L+ + L ++ + + Y + +V + R D+ Sbjct: 257 -----VTHFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDIIRDDQN 306 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 NF + + S +GK+ V+ +++ N T+++T+T ++ Sbjct: 307 TIADLNFSNGATSATVSPDGKQVAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTF 362 Query: 310 SPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD+ + + S+R G +LY+ + +++ + + P +SP G Sbjct: 363 SPDNRTLAYASERNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSPDG 422 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKK 410 +AF + + V+ + + R + + S + +WSP G+ L F + Sbjct: 423 KELAFIEDRN---RLMVINLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNR 479 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 D S + + G + Y + P+WV Sbjct: 480 H-DPYSDIGMVSAQGGKIINLTNSGYTSGSPRWV 512 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT S +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPANGGTATQLTTQASYECSPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ D Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYDSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S +P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PANGGTATQLTTQASYECSPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F ++DG T +YS ++ Sbjct: 201 YDSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERDGST-FNVYSFPIS 249 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQVAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVINLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVSA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPANGGTATQLTTQAS-YECSPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYDSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ G F + Q V + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERDGSTFNVYSFPISSPQSLKTVTHFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + +P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPANGGTATQLTTQASYECSPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 120/353 (33%), Gaps = 47/353 (13%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D + Sbjct: 320 ATVSPDGKQVAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATAI-------EEEVLLPSDKTERTYPQFSPDGKELAFIE 429 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRA---LISVQKDEAMDIYS 286 D ++ + L ++ + F +S +GK I + D DI Sbjct: 430 -DRNRLMVINLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGM 488 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVMQSNG 335 V Q LTN+ + + S + D + I+F ++R G L M + Sbjct: 489 VSAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFMNQDA 548 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----------------EKFAIGVMKKD 379 D+ R+S++ + + A + + + + Sbjct: 549 YDKFRLSKEDYELQKELEKEQKNTTEAKKNDKKKGDNKEKSEEKKEEKVKDIVVELNNIE 608 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 609 DRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLH 659 >gi|83814217|ref|YP_446141.1| acyl-peptide hydrolase, putative [Salinibacter ruber DSM 13855] gi|294508064|ref|YP_003572122.1| peptidase [Salinibacter ruber M8] gi|83755611|gb|ABC43724.1| acyl-peptide hydrolase, putative [Salinibacter ruber DSM 13855] gi|294344392|emb|CBH25170.1| putative peptidase [Salinibacter ruber M8] Length = 690 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 111/321 (34%), Gaps = 62/321 (19%) Query: 175 SRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 R+++ + + L ++ DG+ R +T + +PR+SP+ +VAY Sbjct: 56 DRVVYARTVMDKMDDRRASRLWAVNADGSGHRPITA-PETNASQPRWSPSGDRVAYVAST 114 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV---------------- 276 + D V++ + RI + G R S+ Sbjct: 115 EGDGAEVFVRWMDTGQ-TARITQLEESPSGLSWGPEGDRLAFSMFVPAEPEPFARMPSPP 173 Query: 277 ------------------------QKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSP 311 + ++ V ++T + + +++P Sbjct: 174 EGADWAERPDVIDQTYYRSDGGGYTERGHTQLFVVSASGGTPRQITTGPYDHGGAPTWTP 233 Query: 312 DSSQIVFESDREGKEQL-------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 D ++ ++R +L Y + ++ ++ D SP G IA+T Sbjct: 234 DGETLLISANRHADRRLDPLNTEVYAVDVASGAVTALTT-RQGPDGDVALSPDGSTIAYT 292 Query: 365 KFSGEKF-----AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 F + + VM +DG+ RLL E D ++Q PT++ G ++F +G T K Sbjct: 293 GFDDREQGYQVTKLYVMDRDGTNARLLTEGFDRDVQNPTFTADGEHIVFRYVDEGST--K 350 Query: 418 LYSIDLNGRNETLINTPAYAS 438 + + L+G + S Sbjct: 351 IGRVALDGGRRVVAEHVGGTS 371 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 55/225 (24%) Query: 263 PRFSSNGKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +G R + + + MD +++V+ + +T +SP ++ Sbjct: 49 PQISPSGDRVVYARTVMDKMDDRRASRLWAVNADGSGHRPITAPETNASQPRWSPSGDRV 108 Query: 317 VFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------- 364 + + EG +++V + RI+Q +E S W P+GD +AF+ Sbjct: 109 AYVASTEGDGAEVFVRWMDTGQTARITQLEE-SPSGLSWGPEGDRLAFSMFVPAEPEPFA 167 Query: 365 -----------------------KFSGEKF------AIGVMKKDGSQERLLVEDSNLQ-- 393 + G + + V+ G R + Sbjct: 168 RMPSPPEGADWAERPDVIDQTYYRSDGGGYTERGHTQLFVVSASGGTPRQITTGPYDHGG 227 Query: 394 APTWSPSGRSLIFSRKKDGDT-----GSKLYSIDLNGRNETLINT 433 APTW+P G +L+ S + D +++Y++D+ T + T Sbjct: 228 APTWTPDGETLLISANRHADRRLDPLNTEVYAVDVASGAVTALTT 272 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 13/166 (7%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--DILRVYL 241 G L VMDRDG N R LT D+ + P F+ + + + + D+ I RV L Sbjct: 297 REQGYQVTKLYVMDRDGTNARLLTEGFDRDVQNPTFTADGEHIVFRYVDEGSTKIGRVAL 356 Query: 242 MDTRIDRAPKRIGNFRS---MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 R A G + +SNG R + + +V + LT Sbjct: 357 DGGRRVVAEHVGGTSIGRPYTSGSFSLASNG-RVAFTHATPQRPADVAVAQAGREAQVLT 415 Query: 299 NTLFINISASYSPD-SS--QIVFESDREGKE-QLYVMQSNGSDQKR 340 +N D S QI +ES +G+ + +++ G D + Sbjct: 416 ---ALNDDLFGQVDLGSVEQITYESSHDGRTIEGWIVTPPGFDASQ 458 >gi|255690149|ref|ZP_05413824.1| MdsD protein [Bacteroides finegoldii DSM 17565] gi|260624433|gb|EEX47304.1| MdsD protein [Bacteroides finegoldii DSM 17565] Length = 1101 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 36/237 (15%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V + ++ S P +S +G++ Sbjct: 26 WMRDARISPDGSEIVFCY--KGDIYKV----SAQGGTAVQLTTQASYEANPVWSPDGEQI 79 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + A RLT I ++++PD ++F + Sbjct: 80 AFASDRNGNFDLFIMSADGGAARRLTYHSASEIPSTFTPDGKYVLFSASIQDPATSALFP 139 Query: 322 REGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF------------TKFSG 368 +LY + G + +++ E FD G + S Sbjct: 140 TSAMTELYRVPVEGGNTEQVLGTPAEWVCFDKA----GSNFLYQDRKGFEDEWRKHHTSS 195 Query: 369 EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L D + P ++P G+S+ F +++G + +YS LN Sbjct: 196 IARDIWLYDTQTGEHTNLTNRDGEDRNPVYAPDGKSVYFLSERNGGS-FNVYSFPLN 251 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 104/326 (31%), Gaps = 82/326 (25%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + + D +RD P ++P+ + V + + + VY + Sbjct: 198 RDIWLYD-TQTGEHTNLTNRDGEDRNPVYAPDGKSVYFLSERNGGSFNVYSFPLNAPQQV 256 Query: 251 KRIGNFRSM--------------------------------------------------- 259 K + FR+ Sbjct: 257 KPVTTFRTHPVRFLSVSDKGTLCYAYDGELYTQLPNSRPQKVKVELVRDDDKDIASFRFS 316 Query: 260 --ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + S +GK+ V+ D ++ T+++TNT S++PD+ +V Sbjct: 317 QGATSACVSPDGKQVAFIVRGD----VFVTSTDYPTTKQITNTPAGESGLSFAPDNRTLV 372 Query: 318 FESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + S+R G QLY+ + +++ + K P +SP G IAF + Sbjct: 373 YASERTGNWQLYMAKITRKEDPNFPNATLIEEEVLLPSKTVERRYPQYSPDGKEIAFIED 432 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKL 418 + V+ + + R + + S WSP G+ L F + D S + Sbjct: 433 RN---RLMVLNLETKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDI 488 Query: 419 YSIDLNGRNETLINTPAY-ASDPQWV 443 + G T + Y + P+WV Sbjct: 489 GIVSAQGGAITNLTNSGYMSGSPRWV 514 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 28/203 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +G + + D IY V Q +LT + +SPD QI F SDR Sbjct: 31 RISPDGSEIVFCYKGD----IYKVSAQGGTAVQLTTQASYEANPVWSPDGEQIAFASDRN 86 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFA 372 G L++M ++G +R++ AS ++P G + F+ + Sbjct: 87 GNFDLFIMSADGGAARRLTY-HSASEIPSTFTPDGKYVLFSASIQDPATSALFPTSAMTE 145 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + +G ++ + + +G + ++ +K ++ D Sbjct: 146 LYRVPVEGGNTEQVLGTP-AEWVCFDKAGSNFLYQDRKGFEDEWRKHHTSSIARDIWLYD 204 Query: 423 L-NGRNETLINTPAYASDPQWVG 444 G + L N +P + Sbjct: 205 TQTGEHTNLTNRDGEDRNPVYAP 227 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 21/157 (13%) Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 T A SPD S+IVF K +Y + + G +++ +PVWSP G+ Sbjct: 23 TPLWMRDARISPDGSEIVFCY----KGDIYKVSAQGGTAVQLTTQASYEA-NPVWSPDGE 77 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDGDTGS-- 416 IAF F + +M DG R L S + P+ ++P G+ ++FS S Sbjct: 78 QIAFASDRNGNFDLFIMSADGGAARRLTYHSASEIPSTFTPDGKYVLFSASIQDPATSAL 137 Query: 417 -------KLYSIDLNGRN-ETLINTPAYASDPQWVGF 445 +LY + + G N E ++ TPA WV F Sbjct: 138 FPTSAMTELYRVPVEGGNTEQVLGTPAE-----WVCF 169 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 29/213 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++VA+ D + + K+I N + F+ + + + + ++ Sbjct: 325 SPDGKQVAFIVRGD------VFVTSTDYPTTKQITNTPAGESGLSFAPDNRTLVYASERT 378 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGKEQ 327 +Y + N I YSPD +I F DR + Sbjct: 379 GNWQLYMAKITRKEDPNFPNATLIEEEVLLPSKTVERRYPQYSPDGKEIAFIEDR---NR 435 Query: 328 LYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKKDG 380 L V+ ++++ FD WSP G + F + + IG++ G Sbjct: 436 LMVLNLETKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSAQG 495 Query: 381 SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 L + +P W G +++F ++ G Sbjct: 496 GAITNLTNSGYMSGSPRWVLDGNAVLFQTERYG 528 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 87/234 (37%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + + Sbjct: 43 YKGDIYKVSAQGGTAVQLTTQAS-YEANPVWSPDGEQIAFASDRNGNFDLFIM--SADGG 99 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK L S + ++Y V ++ TE++ Sbjct: 100 AARRLTYHSASEIPSTFTPDGKYVLFSASIQDPATSALFPTSAMTELYRVPVEGGNTEQV 159 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + S +++ DR+G +++ + + ++ + Sbjct: 160 LGTPAEWV--CFDKAGSNFLYQ-DRKGFEDEWRKHHTSSIARDIWLYDTQTGEHTNLT-N 215 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 ++ +PV++P G + F ++ +G F + + Q+ V + Sbjct: 216 RDGEDRNPVYAPDGKSVYFLSERNGGSFNVYSFPLNAPQQVKPVTTFRTHPVRF 269 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V K+ ++PA ++ + + G++ + ++ + Sbjct: 341 VTSTDYPTTKQITNTPAGESGLSFAPDNRTLVYASERTGNWQLYMAKITRKEDPNFPNAT 400 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L L PS+ P++SP+ +++A+ +D + L V ++T+ R Sbjct: 401 LI-------EEEVLLPSKTVERRYPQYSPDGKEIAF--IEDRNRLMVLNLETKKVRQVTD 451 Query: 253 IGNF--RSMILAPRFSSNGKRA---LISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + +S +GK I + D DI V Q A LTN+ +++ S Sbjct: 452 GSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSAQGGAITNLTNSGYMSGSP 511 Query: 308 SYSPDSSQIVFESDREG 324 + D + ++F+++R G Sbjct: 512 RWVLDGNAVLFQTERYG 528 >gi|320102987|ref|YP_004178578.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] gi|319750269|gb|ADV62029.1| WD40-like beta Propeller containing protein [Isosphaera pallida ATCC 43644] Length = 494 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 88/271 (32%), Gaps = 22/271 (8%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIK----NSLCVMDRDGANIRYLTPSRDQIL- 214 D + + + R L G L D IR + +++ Sbjct: 223 DQGFARAADPRWAPDGRKLAFVGFNSQGSDPLIYLIRLIEQTDDQGTIRLQPDGKPRVVA 282 Query: 215 --FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---------P 263 P +S + + +AY + + R + S A P Sbjct: 283 AGVTPTWSSDGRCLAYVASGTPPLQTDWSAPGRNQERIVILTLEGSDAGASRVLVEGIEP 342 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 ++ R + D+ +LTN + ++ D S+++F S+R Sbjct: 343 SWNPRDDRLAFVKVRGGNTDLALTRAAGGGITQLTNHPARDGWPIWTHDGSELIFLSNRT 402 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFTKFSG-EKFAIGVMKKDG 380 + L+ + N +RI + + SP G + FT+ G I ++ Sbjct: 403 NRWDLFKIDPN--QPERIMPFTQHRLREDRADLSPDGLRLLFTERWGLPDSRIVLLDLSR 460 Query: 381 SQERLLVEDSN-LQAPTWSPSGRSLIFSRKK 410 Q +L E N + WSP GR + F ++ Sbjct: 461 DQTVILTEAPNGDREAVWSPDGRWIAFVSRR 491 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 116/298 (38%), Gaps = 34/298 (11%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI-LFEPRFSPNQQKVAYATY-DDEDIL 237 + L ++ G+++ + + +PR++P+ +K+A+ + Sbjct: 194 PLFQGQPATDDSRLFLVTPQGSDLTMIAEDQGFARAADPRWAPDGRKLAFVGFNSQGSDP 253 Query: 238 RVYLM----DTRIDRAPKRIGNFRSMILA----PRFSSNGKRALISVQKDEAMDI-YSVD 288 +YL+ T + + + ++A P +SS+G+ + +S Sbjct: 254 LIYLIRLIEQTDDQGTIRLQPDGKPRVVAAGVTPTWSSDGRCLAYVASGTPPLQTDWSAP 313 Query: 289 LQSNATERLTNTLFINI----------SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 ++ + + S++P ++ F R G L + ++ G Sbjct: 314 GRNQERIVILTLEGSDAGASRVLVEGIEPSWNPRDDRLAFVKVRGGNTDLALTRAAGGGI 373 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-- 396 +++ + A P+W+ G + F ++ + + + + + L+ Sbjct: 374 TQLT-NHPARDGWPIWTHDGSELIFLSNRTNRWDLFKIDPNQPERIMPFTQHRLREDRAD 432 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA--------YASDPQWVGFM 446 SP G L+F+ ++ G S++ +DL+ R++T+I T A ++ D +W+ F+ Sbjct: 433 LSPDGLRLLFT-ERWGLPDSRIVLLDLS-RDQTVILTEAPNGDREAVWSPDGRWIAFV 488 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 94/276 (34%), Gaps = 36/276 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIR---YLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 + + + S ++ L G R + PR + + + Sbjct: 145 MVMLRAERSDRLRAVLRERPGRGQPERVSEWELERSQPAPERPR--NSGRPPLFQGQPAT 202 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALISVQKDEAMD--IYSVDL- 289 D R++L+ T I + A PR++ +G++ + D IY + L Sbjct: 203 DDSRLFLV-TPQGSDLTMIAEDQGFARAADPRWAPDGRKLAFVGFNSQGSDPLIYLIRLI 261 Query: 290 ---QSNATERL-----TNTLFINISASYSPDSSQIVFESDREGKEQLYV-MQSNGSDQKR 340 T RL + ++ ++S D + + + G L + G +Q+R Sbjct: 262 EQTDDQGTIRLQPDGKPRVVAAGVTPTWSSDGRCLAYVA--SGTPPLQTDWSAPGRNQER 319 Query: 341 I---SQDKEASYFD--------PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-E 388 I + + + P W+P+ D +AF K G + + + G L Sbjct: 320 IVILTLEGSDAGASRVLVEGIEPSWNPRDDRLAFVKVRGGNTDLALTRAAGGGITQLTNH 379 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + P W+ G LIF + L+ ID N Sbjct: 380 PARDGWPIWTHDGSELIFLSNRTNRW--DLFKIDPN 413 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 24/156 (15%) Query: 313 SSQIVFESDREGKE-QLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFS--G 368 +F+ + +L+++ GSD I++D A DP W+P G +AF F+ G Sbjct: 191 GRPPLFQGQPATDDSRLFLVTPQGSDLTMIAEDQGFARAADPRWAPDGRKLAFVGFNSQG 250 Query: 369 EKFAIGVMKK----DGSQERLLVEDSNLQA------PTWSPSGRSLIFSRK--------- 409 I +++ D L D + PTWS GR L + Sbjct: 251 SDPLIYLIRLIEQTDDQGTIRLQPDGKPRVVAAGVTPTWSSDGRCLAYVASGTPPLQTDW 310 Query: 410 -KDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G ++ + L G + +P W Sbjct: 311 SAPGRNQERIVILTLEGSDAGASRVLVEGIEPSWNP 346 >gi|299537211|ref|ZP_07050514.1| putative peptidase [Lysinibacillus fusiformis ZC1] gi|298727452|gb|EFI68024.1| putative peptidase [Lysinibacillus fusiformis ZC1] Length = 662 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 55/263 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + +P+ SP+ +V Y ++ Y+ + D+ P++ +P +S +G Sbjct: 18 VADPQLSPDGTEVVYIETRMDEKKNDYISNLFYINLKDKTPQQWTFGEDRTSSPVWSPDG 77 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------- 319 + + IY + +++T+ S +SP +I F Sbjct: 78 SQIAFLSTRTGKSQIYVLSKAGGEAKQVTHCKNGATSPVWSPCGKKIAFSVVLGKDETIL 137 Query: 320 ------------------------SDREG------KEQLYVMQSNGSDQKRISQDKEASY 349 SD G + ++ + +++++ KE + Sbjct: 138 DKAEDEKKKDKELKPLEIEKMKHKSDAGGFIDMEQFTHIAMVNVESGELEQVTEGKEYFH 197 Query: 350 FDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGR 402 WSP G + + E I +++ + Q L E S T WSP+ R Sbjct: 198 LG-TWSPDGKYLTYLADKAEDLDFSFNVDIYLLELETKQSHKLTEGSGAYYQTAWSPNSR 256 Query: 403 SLIFS---RKKDGDTGSKLYSID 422 L F R+ + T +KL+ D Sbjct: 257 YLSFVGGEREFENATQAKLWIYD 279 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 54/390 (13%), Positives = 126/390 (32%), Gaps = 86/390 (22%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS----SPASWRKIAHTISDDIYQSITGEK 170 ++ +G + + +E R+ D K I + + +P W S ++ Sbjct: 22 QLSPDGTEVVYIETRM-DEKKNDYISNLFYINLKDKTPQQWTFGEDRTSSPVW----SPD 76 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G S+I F+S K+ + V+ + G + +T ++ P +SP +K+A++ Sbjct: 77 G---SQIAFLSTRTG----KSQIYVLSKAGGEAKQVTHCKNGATS-PVWSPCGKKIAFSV 128 Query: 231 ---------------------------------------YDDEDILRVYLMDTRIDRAPK 251 D E + +++ + Sbjct: 129 VLGKDETILDKAEDEKKKDKELKPLEIEKMKHKSDAGGFIDMEQFTHIAMVNVESGEL-E 187 Query: 252 RIGNFRSMILAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 ++ + +S +GK + +DIY ++L++ + +LT Sbjct: 188 QVTEGKEYFHLGTWSPDGKYLTYLADKAEDLDFSFNVDIYLLELETKQSHKLTEGSGAYY 247 Query: 306 SASYSPDSSQIVFES-----DREGKEQLYVMQSNGSDQKRISQDKEASYFDPV------- 353 ++SP+S + F + + +L++ ++ + +A D V Sbjct: 248 QTAWSPNSRYLSFVGGEREFENATQAKLWIYDMEQKLLNCVTSEFDAPVGDFVIGDFLQG 307 Query: 354 -------WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLI 405 W F AI DG + +D + + + + ++++ Sbjct: 308 VASPRVQWMNDNHSFYFQVTDHGNAAIYYGNVDGEIYPAIHDDQYVYGFSLDAQNDQAIV 367 Query: 406 FSRKKDGDTGSKLYSIDL-NGRNETLINTP 434 L+ ++L G E L + Sbjct: 368 AISTTTNPG--DLFYVNLKTGAKEQLTSIN 395 >gi|116624690|ref|YP_826846.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116227852|gb|ABJ86561.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 595 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 28/249 (11%) Query: 214 LFEPRFSPNQQKVAYATYDDE---DILRVYLMDTRID-RAPKRIGNFRSMILAPRFSSNG 269 + PR +P+ Y ++ D + L I+ P+RI +PR+S + Sbjct: 33 IASPRINPDGTDAVYVETWNDRATDRVCANLWQVAIEKGTPQRITEGPWRDSSPRWSPD- 91 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 R + + I+ + E+LT+ S ++SPD + F +++L+ Sbjct: 92 SRLAWISDRTGSPQIWVRRM--GGAEKLTDLTAPPQSLAWSPDGKSLAFTM----RDRLF 145 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----------FSGEKFAIGVMKKD 379 V+ + G + + + +P W P G I + GE +AI + D Sbjct: 146 VVPAAGGKPREFPLGELEIHGEPAWMPDGQSILVSAAPPPNAANVLQGGEIYAIRL--AD 203 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG---SKLYSIDLNGRNETLI--NTP 434 G++ +L + P SP G + + ++ SKLY + +G ++ + Sbjct: 204 GTRRQLTQHPGPDEDPVPSPDGSRIAWIAREPKPQSYVVSKLYVANPDGSRAKVLAGSLD 263 Query: 435 AYASDPQWV 443 PQW Sbjct: 264 RDVRHPQWS 272 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 98/273 (35%), Gaps = 28/273 (10%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + +L + + + +T PR+SP+ ++A+ + ++++ Sbjct: 52 NDRATDRVCANLWQVAIEKGTPQRITEG-PWRDSSPRWSPD-SRLAWISDRTGSP-QIWV 108 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + +S +GK +++ ++ V Sbjct: 109 RRMGGAEKLTDLTAPPQSL---AWSPDGKSLAFTMR----DRLFVVPAAGGKPREFPLGE 161 Query: 302 -FINISASYSPDSSQIVFESDREGK-------EQLYVMQSNGSDQKRISQDKEASYFDPV 353 I+ ++ PD I+ + ++Y ++ +++++Q DPV Sbjct: 162 LEIHGEPAWMPDGQSILVSAAPPPNAANVLQGGEIYAIRLADGTRRQLTQ-HPGPDEDPV 220 Query: 354 WSPQGDLIAFTKFSGEK-----FAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIF 406 SP G IA+ + + V DGS+ ++L D +++ P WS R++ F Sbjct: 221 PSPDGSRIAWIAREPKPQSYVVSKLYVANPDGSRAKVLAGSLDRDVRHPQWSSDSRTIYF 280 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G T +Y+ +G + P S+ Sbjct: 281 LADDHGAT--YVYAARNDGSVRQVTKAPDRLSE 311 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 113/332 (34%), Gaps = 52/332 (15%) Query: 94 PDSIPRFQDWNSL--------GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFF 145 P + + W + G + DR+ LW V K G Sbjct: 21 PLTPDDWWAWREIASPRINPDGTDAVYVETWNDRATDRVCAN--LWQVAIEK---GTPQR 75 Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + WR + + +SR+ ++S+ S + V GA Sbjct: 76 ITEGPWRD-------------SSPRWSPDSRLAWISDRTGSP----QIWVRRMGGAEKLT 118 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + Q L +SP+ + +A+ D R++++ + + + P + Sbjct: 119 DLTAPPQSL---AWSPDGKSLAFTMRD-----RLFVVPAAGGKPREFPLGELEIHGEPAW 170 Query: 266 SSNGKRALISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 +G+ L+S +IY++ L +LT + SPD S+I + Sbjct: 171 MPDGQSILVSAAPPPNAANVLQGGEIYAIRLADGTRRQLTQHPGPDEDPVPSPDGSRIAW 230 Query: 319 ESDREGKEQ------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + RE K Q LYV +GS K ++ + P WS I F Sbjct: 231 IA-REPKPQSYVVSKLYVANPDGSRAKVLAGSLDRDVRHPQWSSDSRTIYFLADDHGATY 289 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 + + DGS ++ L + + +GR++ Sbjct: 290 VYAARNDGSVRQVTKAPDRLSEFSVADTGRAI 321 >gi|302141778|emb|CBI18981.3| unnamed protein product [Vitis vinifera] Length = 541 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 95/308 (30%), Gaps = 47/308 (15%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY--ATYDDE 234 I + + S L + + S F P SP+ ++ Y D Sbjct: 200 IAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSN 259 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +L+ + I FR P FS G R E +Y V+ + Sbjct: 260 GGKSPHLLLENLKSPLPEISLFRFDGSFPSFSPGGDRIAYV----EFPGVYVVNRDGSGR 315 Query: 295 ERLTNTLFINISASYSPDSSQIVFES------DREGKEQLYVMQSN------------GS 336 + + + + ++ +V+ S K + + + G Sbjct: 316 REVFSGIAFST--AWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPSYKKLTTGG 373 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERLLVEDS-- 390 R++ + + WSP GD I F G F + V+ +G+ R +V Sbjct: 374 GIHRLT-EGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHPNGTGLRKVVHSGSA 432 Query: 391 -NLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRN-ETLINTPAY 436 P +SP G+S++F+ ++ ++L+G L + Sbjct: 433 GRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYE 492 Query: 437 ASDPQWVG 444 P W Sbjct: 493 DGTPAWAP 500 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/359 (19%), Positives = 124/359 (34%), Gaps = 70/359 (19%) Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 + + +++T P + F S G + + + D +E L+D+ Sbjct: 171 VPRKMVIERVT-PPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIE--LFDLLS------ 221 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 +R++ IS + D ++RI + S K+ ++ Sbjct: 222 -------NEFRELTRRISPQTHHFNPFISPD-STRIGYHRCRGDSNGGKSPHLLL----E 269 Query: 202 NIRYLTPSRDQILF---EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 N++ P F P FSP ++AY + VY+++ + F Sbjct: 270 NLKSPLPEISLFRFDGSFPSFSPGGDRIAYVEF-----PGVYVVNRDGSGRREV---FSG 321 Query: 259 MILAPRFSSNGKRALISV------QKDEAMDIYSVDLQ------------SNATERLTNT 300 + + + K + + + +DI S+++ RLT Sbjct: 322 IAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPSYKKLTTGGGIHRLTEG 381 Query: 301 LFINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVW-S 355 + + ++SPD IVF SDR G +LYV+ NG+ +++ A + W S Sbjct: 382 PWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFS 441 Query: 356 PQGDLIAFT--------------KFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSP 399 P G I FT I V+ DGS L +S P W+P Sbjct: 442 PDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 500 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 86/255 (33%), Gaps = 38/255 (14%) Query: 214 LFEPRFSP-NQQKVAYATYDDEDILR-VYLMDTRIDRAPK--RIGNFRSMILAPRFSSNG 269 F P SP N+ +A AT R + L D + + R + ++ P S + Sbjct: 187 AFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDS 246 Query: 270 KRALISVQKDEA-----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 R + ++ + +L+S ++ F S+SP +I + Sbjct: 247 TRIGYHRCRGDSNGGKSPHLLLENLKS-PLPEISLFRFDGSFPSFSPGGDRIAYVEF--- 302 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---------EKFAIGV 375 +YV+ +GS ++ + F W + + +T + +I V Sbjct: 303 -PGVYVVNRDGSGRREV---FSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINV 358 Query: 376 MKKD----------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--GDTGSKLYSIDL 423 D G RL WSP G ++F+ ++ G G +LY I Sbjct: 359 DDVDQPSYKKLTTGGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHP 418 Query: 424 NGRNETLINTPAYAS 438 NG + A Sbjct: 419 NGTGLRKVVHSGSAG 433 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 26/177 (14%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPR------ 218 KG + + + + S+ V D D + + LT ++ P Sbjct: 330 HKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPSYKKLTTGGGIHRLTEGPWTDTMCN 389 Query: 219 FSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALI 274 +SP+ + +A+ + +Y++ K + P FS +GK + Sbjct: 390 WSPDGDWIVFASDRENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVF 449 Query: 275 SVQK--------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + DI+ V+L + RLT+ + + + +++P + V Sbjct: 450 TSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAPKVIRPV 506 >gi|212692527|ref|ZP_03300655.1| hypothetical protein BACDOR_02023 [Bacteroides dorei DSM 17855] gi|212664938|gb|EEB25510.1| hypothetical protein BACDOR_02023 [Bacteroides dorei DSM 17855] Length = 1084 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 107/270 (39%), Gaps = 33/270 (12%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V + +R+L+ + L ++ + + Y + +V + TR D+ Sbjct: 256 TVTNFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDITRDDQNTIAD 310 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF + + S +GK+ V+ +++ N T+++T+T ++SPD+ Sbjct: 311 LNFSNGATSATVSPDGKQIAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTFSPDN 366 Query: 314 SQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + + S+R G +LY+ + +++ + + P +SP G +A Sbjct: 367 RTLAYASERNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELA 426 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDT 414 F + + V+ + + R + + + + +WSP G+ L F + D Sbjct: 427 FIEDRN---RLMVLNLETKKVRQVTDGATWFSTGGGFDYSWSPDGKWFTLEFIGNRH-DP 482 Query: 415 GSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 S + ++ G + Y + P+WV Sbjct: 483 YSDIGMVNAQGGKIINLTNSGYTSGSPRWV 512 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQIAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLETKKVRQVTDGATWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVNA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT + +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ + Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYNSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PSNGGTATQLTTQASYECNPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F +++G T +YS ++ Sbjct: 201 YNSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERNGGT-FNVYSFPIS 249 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 88/254 (34%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPSNGGTATQLTTQAS-YECNPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYNSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ +G F + Q V + + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERNGGTFNVYSFPISSPQSLETVTNFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 123/357 (34%), Gaps = 55/357 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D + Sbjct: 320 ATVSPDGKQIAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATTI-------EEEVLLPSDKTERTYPQFSPDGKELAFI- 428 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNF-----RSMILAPRFSSNGKRA---LISVQKDEAM 282 ED R+ +++ + +++ + +S +GK I + D Sbjct: 429 ---EDRNRLMVLNLET-KKVRQVTDGATWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYS 484 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVM 331 DI V+ Q LTN+ + + S + D + I+F ++R G L M Sbjct: 485 DIGMVNAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFM 544 Query: 332 QSNGSDQKRISQDKE----------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + D+ R+S++ + + + + + Sbjct: 545 NQDAYDKFRLSKEDYELQKELEKEQKNTTETKKNGKKKGDNKEKSEEKKEEKVKDIVVEL 604 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 605 SNIEDRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLH 659 >gi|20090389|ref|NP_616464.1| TolB protein [Methanosarcina acetivorans C2A] gi|19915397|gb|AAM04944.1| TolB protein-like protein [Methanosarcina acetivorans C2A] Length = 577 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 29/268 (10%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + + L ++DRDG ++ LT + D++ +S + +K+AY+T ED + Sbjct: 173 KDPLNDQLYLIDRDGYVLQKLTDTSDRVETAI-WSNDGKKIAYSTGQTEDEETGLWIINE 231 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF--I 303 KR+ N +++ +S + R DE +YS+ + +L+ F Sbjct: 232 NGTENKRLDN--GIVIG--WSPDDSRIYYV---DENFSLYSIKVDGTDRFQLSTKSFSRN 284 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 S+SPD ++F + + +++ S G + + + + F P WSP+GD IAF Sbjct: 285 EDVFSFSPDRKSLIFSTVNDEGVTMFLTDSTGKNVQVLEEFSGRCVFKPSWSPKGDKIAF 344 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL-------IFSRKKDGDTGS 416 T+ + + + DG+ ++L+ W PSG + +F DG T Sbjct: 345 TQGTD----LHTINPDGTGKKLISSAITDYE--WHPSGDFISFIASDSVFVASPDGSTKI 398 Query: 417 KLYSIDLNGRNETLINT---PAYASDPQ 441 +L +G N +N ++ D Sbjct: 399 QL---TEDGDNYRFLNDKYLSGWSPDGS 423 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 119/312 (38%), Gaps = 46/312 (14%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ-------------IL 214 D + ++ + ++G ++ V++ DG+ IR L + + Sbjct: 37 SWSPDGSRLVIDAFFNPMTGTRLYAVYVLNADGSGIRELASTPNNTKERSLSIRGVYYPF 96 Query: 215 FEPRFSPNQQKVA----------YATYDDEDILRVYLMD----TRIDRAPKRIGNFRSMI 260 ++SP+ ++ + D D + T +D + I + Sbjct: 97 SWSQWSPDGSRIGIFANIFTVRDFYVIADPDNTLIKTAGKCNYTTVDNIRENILDLE-WQ 155 Query: 261 LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 ++ +ALI + KD +Y +D ++LT+T +A +S D +I + Sbjct: 156 TNFIWNPEDTKALIIMDKDPLNDQLYLIDRDGYVLQKLTDTSDRVETAIWSNDGKKIAYS 215 Query: 320 SDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 + + + + L+++ NG++ KR+ WSP I + E F++ +K Sbjct: 216 TGQTEDEETGLWIINENGTENKRLDNG-----IVIGWSPDDSRIYYV---DENFSLYSIK 267 Query: 378 KDGSQERLLVE---DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-- 432 DG+ L N ++SP +SLIFS D G ++ D G+N ++ Sbjct: 268 VDGTDRFQLSTKSFSRNEDVFSFSPDRKSLIFSTV--NDEGVTMFLTDSTGKNVQVLEEF 325 Query: 433 TPAYASDPQWVG 444 + P W Sbjct: 326 SGRCVFKPSWSP 337 Score = 76.6 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 89/214 (41%), Gaps = 30/214 (14%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYD 232 +SRI +V E+ SL + DG + L T S + FSP+++ + ++T + Sbjct: 251 DSRIYYVDEN-------FSLYSIKVDGTDRFQLSTKSFSRNEDVFSFSPDRKSLIFSTVN 303 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 DE + + + + + F + P +S G + + + D+++++ Sbjct: 304 DEGV--TMFLTDSTGKNVQVLEEFSGRCVFKPSWSPKGDKIAFT----QGTDLHTINPDG 357 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 ++L ++ + + P I F + + ++V +GS + ++++D + F Sbjct: 358 TG-KKLISSAITDYE--WHPSGDFISFIA----SDSVFVASPDGSTKIQLTEDGDNYRFL 410 Query: 352 PV-----WSPQGDLIAFTKFSGEKFAIGVMKKDG 380 WSP G + + + ++K +G Sbjct: 411 NDKYLSGWSPDGSRLLIS---NGSTDLSMIKLEG 441 >gi|154493795|ref|ZP_02033115.1| hypothetical protein PARMER_03138 [Parabacteroides merdae ATCC 43184] gi|154086408|gb|EDN85453.1| hypothetical protein PARMER_03138 [Parabacteroides merdae ATCC 43184] Length = 1079 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPATGGEARRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M G + R++ D P W+P G I + + F + Sbjct: 90 VYTMPVTGGEPLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGSRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 ++K+G + L E ++SP G+ L ++R G ++ Sbjct: 150 TVEKEGGLSEAIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDVWIYSS 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 + + E + + PA P W+G Sbjct: 207 DKKTVENITDNPAQDIIPMWIG 228 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 142/342 (41%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + S + I + DI G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDVWIYSSDKKTVENITDNPAQDIIPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V D ++++ + + + I+FE N + + Sbjct: 236 DRDRTMNIFVYNTKTKQTDKVTDFTEYDVKFPSANGNTIVFE-----NGGYIYKMDAGSK 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + T + + I + I S +G+R +++ + +++++ ++ Sbjct: 291 KPEKVNITLTSDNIYARSEIKDGADYITEACLSPDGERLVVTARG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + +A +SPD IV+ SD G+ +LY+ + G + ++++D + Sbjct: 347 TKNITRSPGAHDRNAQWSPDGKFIVYISDATGETELYMQDAIGGEHVQLTKDNDTYIRGF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 SP + +T + ++ + L++D + T+SP + L ++R Sbjct: 407 ELSPDSKAVVYTDRKN---RMNLLDVATKKVTTLLQDPMGEPRGVTFSPDSKWLTYTRT- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + S +Y +L + E + +P +++D +++ F Sbjct: 463 GNNEYSIVYVYNLAEKKEYPVTDKWYDSSSPVFSTDGKYLVF 504 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 85/255 (33%), Gaps = 11/255 (4%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D + S G F + S + + D R + E Sbjct: 263 DVKFPSANGNTIVFENGGYIYKMDAGSKKPEKVNITLTSDNIYARSEIKDGADYITEACL 322 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++ + V+ + + + ++S +GK + Sbjct: 323 SPDGERLVVTARGE-----VFNLPVEKGVTKNITRSPGAHDRNAQWSPDGKFIVYISDAT 377 Query: 280 EAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 ++Y D +LT + SPDS +V+ DR K ++ ++ Sbjct: 378 GETELYMQDAIGGEHVQLTKDNDTYIRGFELSPDSKAVVYT-DR--KNRMNLLDVATKKV 434 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKDGSQERLLVEDSNLQA-PT 396 + QD +SP + +T+ +++I V +E + + + P Sbjct: 435 TTLLQDPMGEPRGVTFSPDSKWLTYTRTGNNEYSIVYVYNLAEKKEYPVTDKWYDSSSPV 494 Query: 397 WSPSGRSLIFSRKKD 411 +S G+ L+F+ +D Sbjct: 495 FSTDGKYLVFASARD 509 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 101/280 (36%), Gaps = 48/280 (17%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G R LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPATGGEARRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPV-TGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 R+ + ++ +G R + + + +++V+ + +E + Sbjct: 102 RVTYTATNSRDDLGDRMGPNNIVMTWTPDGSRIVYRNRISDGFSGKLFTVEKEGGLSEAI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + +++ S+ + I+ D Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDVWIYSSDKKTVENIT-DNP 218 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSL 404 A P+W GD I F I V Q + + + +++ P S +G ++ Sbjct: 219 AQDIIPMW--IGDEIFFLSDRDRTMNIFVYNTKTKQTDKVTDFTEYDVKFP--SANGNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +F + G +Y +D + N TL + YA Sbjct: 275 VF------ENGGYIYKMDAGSKKPEKVNITLTSDNIYARS 308 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 13/216 (6%) Query: 159 SDDIYQSITGEKG--DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 SD+IY + G L + + + + + + +T S Sbjct: 301 SDNIYARSEIKDGADYITEACLSPDGERLVVTARGEVFNLPVEKGVTKNITRSPGAHDRN 360 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 ++SP+ + + Y + D +Y+ D + + + I S + K + + Sbjct: 361 AQWSPDGKFIVYIS-DATGETELYMQDAIGGEHVQLTKDNDTYIRGFELSPDSKAVVYT- 418 Query: 277 QKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGKEQ---LYVMQ 332 D + +D+ + L ++SPDS + + R G + +YV Sbjct: 419 --DRKNRMNLLDVATKKVTTLLQDPMGEPRGVTFSPDSKWLTYT--RTGNNEYSIVYVYN 474 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + ++ DK PV+S G + F Sbjct: 475 LAEKKEYPVT-DKWYDSSSPVFSTDGKYLVFASARD 509 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 5/143 (3%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L + D G LT D + SP+ + V Y + R+ L+D Sbjct: 374 SDATGETELYMQDAIGGEHVQLTKDNDTYIRGFELSPDSKAVVYTDRKN----RMNLLDV 429 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI-YSVDLQSNATERLTNTLFI 303 + + + FS + K + + I Y +L +T+ + Sbjct: 430 ATKKVTTLLQDPMGEPRGVTFSPDSKWLTYTRTGNNEYSIVYVYNLAEKKEYPVTDKWYD 489 Query: 304 NISASYSPDSSQIVFESDREGKE 326 + S +S D +VF S R+ Sbjct: 490 SSSPVFSTDGKYLVFASARDFNP 512 >gi|262196288|ref|YP_003267497.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079635|gb|ACY15604.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1599 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 20/265 (7%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +V+ ++ V + DG+ + S + ++ FSP+ +++A A+ D + V L Sbjct: 1153 RIVTSSADKTVRVWNGDGSGAPLVVGSHESEVWAAAFSPDGKQIATASQD----VFVRLW 1208 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + AP + + F+ +G+ L + D + I+ L+ + L Sbjct: 1209 NADGSGAPHVLSGHSGGVRCLDFNPDGRSLL-TASLDGELRIW--PLEGSEFTVLREHEA 1265 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S S+ PD VF S L + ++G R+ E+ D ++SP G + Sbjct: 1266 GVNSISFHPDGQ--VFVS-ASADGTLRLWPADGRGSGRVLGRHESMATDAMFSPDGRYVV 1322 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK------DGDTGS 416 + F G + + DG+ L D + A +SP G+ ++ + + D G Sbjct: 1323 SSAFDGSV-RVWEVDGDGTTLALRDHDGMVFAAAFSPDGQRIVTTSQDKTARVWDARDGR 1381 Query: 417 KLYSIDLNGRNETLINTPAYASDPQ 441 +L +D +G ++ A++ D Sbjct: 1382 ELLVLDGHGG---VVVAAAFSPDGS 1403 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 97/264 (36%), Gaps = 24/264 (9%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 VVS S+ V + DG D ++F FSP+ Q++ + D + Sbjct: 1319 RYVVSSAFDGSVRVWEVDGDGTTLALRDHDGMVFAAAFSPDGQRIVTTSQDK----TARV 1374 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D R R + +++A FS +G + D + ++ L Sbjct: 1375 WDARDGRELLVLDGHGGVVVAAAFSPDGSLLA-TAAGDGVVRVWDAS-DGGIAAVLRGHT 1432 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++ PD QI S +G +++ ++GS + R+ + E + +SP G + Sbjct: 1433 AAVYGVAFRPDGRQIASAS-ADGTVRVW--NTDGSGESRVFRGHEDTVTWVDYSPDGTRL 1489 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + + I +G L + + +SP G S++ + D +++ Sbjct: 1490 V-SSSNDKTVRIWPTLGEGEPVVLRGHEQWVNKARFSPDGASIVSASD---DRTIRIWR- 1544 Query: 422 DLNGRNETLINTPAYASDPQ-WVG 444 DL+ P DP+ W Sbjct: 1545 DLS---------PPSLRDPRLWSA 1559 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 95/262 (36%), Gaps = 17/262 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 VS +L + DG + + + + FSP+ + V + +D V + + Sbjct: 1280 VSASADGTLRLWPADGRGSGRVLGRHESMATDAMFSPDGRYVVSSAFDG----SVRVWEV 1335 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 D + + M+ A FS +G+R + + +D+ ++ L + Sbjct: 1336 DGDGTTLALRDHDGMVFAAAFSPDGQRIV-TTSQDKTARVWDA-RDGRELLVLDGHGGVV 1393 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 ++A++SPD S + G + V ++ + + A+ + + P G IA Sbjct: 1394 VAAAFSPDGSLLA---TAAGDGVVRVWDASDGGIAAVLRGHTAAVYGVAFRPDGRQIASA 1450 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 G + V DGS E + + +SP G L+ S D +++ Sbjct: 1451 SADGT---VRVWNTDGSGESRVFRGHEDTVTWVDYSPDGTRLVSSSN---DKTVRIWPTL 1504 Query: 423 LNGRNETLINTPAYASDPQWVG 444 G L + + ++ Sbjct: 1505 GEGEPVVLRGHEQWVNKARFSP 1526 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 17/257 (6%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V SG ++ + DG + ++ +F FSP+ +++A + D V L Sbjct: 986 VASGSGDGTVRLWSADGLGAPRVLHPHEETIFAVEFSPDGKRIATGSRDG----TVRLTS 1041 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 P + +++ F +G R S D + ++S D + L + Sbjct: 1042 LEDGMPPVVLDGRGRGVMSVAFDRSGTRIA-SADVDGVIRVWSADGRE-PPVMLRGHDGV 1099 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +S ++SPD S++V V ++G I + E + G I Sbjct: 1100 ILSIAFSPDGSRLV---SAGADATARVWGADGRSASVILRGHEDVVTSASFRGDGARIVT 1156 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + V DGS L+V +S + A +SP G+ + + + D +L++ Sbjct: 1157 SSADKT---VRVWNGDGSGAPLVVGSHESEVWAAAFSPDGKQIATASQ---DVFVRLWNA 1210 Query: 422 DLNGRNETLINTPAYAS 438 D +G L Sbjct: 1211 DGSGAPHVLSGHSGGVR 1227 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 12/214 (5%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + +V+ + V D + ++ FSP+ +A A D V + Sbjct: 1361 QRIVTTSQDKTARVWDARDGRELLVLDGHGGVVVAAAFSPDGSLLATAAGDG----VVRV 1416 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D + + + F +G++ S D + +++ D S + Sbjct: 1417 WDASDGGIAAVLRGHTAAVYGVAFRPDGRQIA-SASADGTVRVWNTD-GSGESRVFRGHE 1474 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 YSPD +++V S+ + + + + G + + + E +SP G I Sbjct: 1475 DTVTWVDYSPDGTRLVSSSN---DKTVRIWPTLGEGEPVVLRGHEQWVNKARFSPDGASI 1531 Query: 362 AFTKFSGEKFAIG--VMKKDGSQERLLVEDSNLQ 393 + I + RL + Sbjct: 1532 V-SASDDRTIRIWRDLSPPSLRDPRLWSATTYCM 1564 Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 28/160 (17%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 AS+SPD + S G + + ++G R+ E + F +SP G IA Sbjct: 975 WDASFSPDGRWVASGS---GDGTVRLWSADGLGAPRVLHPHEETIFAVEFSPDGKRIATG 1031 Query: 365 KF------------------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS--L 404 G + + D S R+ D + WS GR + Sbjct: 1032 SRDGTVRLTSLEDGMPPVVLDGRGRGVMSVAFDRSGTRIASADVDGVIRVWSADGREPPV 1091 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + R DG S +S D + L++ A A+ W Sbjct: 1092 M-LRGHDGVILSIAFSPDGS----RLVSAGADATARVWGA 1126 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 30/173 (17%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G ++ V R+WD D A R HT + +Y G Sbjct: 1402 GSLLATAAGDGVV--RVWDASDG---------GIAAVLR--GHTAA--VYGVAFRPDG-- 1444 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + S ++ V + DG+ + + + +SP+ ++ ++ D Sbjct: 1445 --------RQIASASADGTVRVWNTDGSGESRVFRGHEDTVTWVDYSPDGTRLVSSSNDK 1496 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 V + T + P + + RFS +G + S D + I+ Sbjct: 1497 ----TVRIWPTLGEGEPVVLRGHEQWVNKARFSPDGASIV-SASDDRTIRIWR 1544 >gi|254525121|ref|ZP_05137176.1| putative regulatory protein [Stenotrophomonas sp. SKA14] gi|219722712|gb|EED41237.1| putative regulatory protein [Stenotrophomonas sp. SKA14] Length = 775 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 100/276 (36%), Gaps = 19/276 (6%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-- 234 I F S G + + G +R T L ++P+ + + + + Sbjct: 284 IAFARFSAEGG---CQVLIASATGGALRQATRCDGTELLSFDWTPDGRGLVFGSMVGRYA 340 Query: 235 -DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +RV + + A + APR+S +GK + V+ + D++ + Sbjct: 341 HRGIRVLDLASGQWNAVDYSVDADDFDYAPRYSPDGKWLVF-VRNPQMGDLWRMPASGGV 399 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 E+LTN ++ D IVF + + +LY + +++ + P Sbjct: 400 PEQLTNEAAEQRGWAWVDDGRTIVFGRRVDSEVRLYYLDV---ERRTLRDAGLDDAQWPA 456 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 S G ++AF +F + + DG + L P +P GR L+F+ + G Sbjct: 457 VSRHGGVLAFVHRR-AQFGVFKVPTDGGSAQRLFASSGRDGQPMAAPDGRQLVFTSDRSG 515 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASD----PQWVG 444 L+ D+ R ++L + P W Sbjct: 516 SFA--LWWADMQ-RPDSLRPIEGLRPEGRQAPDWSA 548 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 45/324 (13%), Positives = 101/324 (31%), Gaps = 20/324 (6%) Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 D + F + + Q++ R+ T D D ++F Sbjct: 278 SPDGREIAFARFSAEGGCQVLIASATGGA--LRQA--TRCDGTELLSFDWTPDGRG-LVF 332 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 S + + N + D + PR+SP+ + + + + Sbjct: 333 GSMVGRYAHRGIRVLDLASGQWNAVDYSVDADDFDYAPRYSPDGKWLVFV---RNPQMGD 389 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 P+++ N + + +G+ + + D + +Y +D++ Sbjct: 390 LWRMPASGGVPEQLTNEAAEQRGWAWVDDGRTIVFGRRVDSEVRLYYLDVERRTLR---- 445 Query: 300 TLFINIS--ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 ++ + + S + F R + ++ + ++G +R+ P+ +P Sbjct: 446 DAGLDDAQWPAVSRHGGVLAFV-HRRAQFGVFKVPTDGGSAQRL-FASSGRDGQPMAAPD 503 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ---APTWSPSGRSLIFSRKKDGDT 414 G + FT FA+ +E + AP WS R L+ +D Sbjct: 504 GRQLVFTSDRSGSFALWWADMQRPDSLRPIEGLRPEGRQAPDWSADSRHLL-VVGRDEHG 562 Query: 415 GSKLYSIDLNGRNETLINTPAYAS 438 + +Y I + PA Sbjct: 563 RTVIYEISPRDERLQALPVPAEQP 586 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 17/169 (10%) Query: 295 ERLTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKR-ISQDKEASYF 350 +T T + SPD SQ+ +E D +G + V S + ++ ++ AS Sbjct: 214 RLITATSGFETYPTLSPDGSQVAYEGANEDGKGGGAIKVQTSGNAPARQLLAPPVGASDR 273 Query: 351 DPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFS 407 P WSP G IAF +FS + + G R + + L + W+P GR L+F Sbjct: 274 FPSWSPDGREIAFARFSAEGGCQVLIASATGGALRQATRCDGTELLSFDWTPDGRGLVFG 333 Query: 408 RKKDGDTGSKLYSIDLNGRNETLIN----------TPAYASDPQWVGFM 446 + +DL ++ P Y+ D +W+ F+ Sbjct: 334 SMVGRYAHRGIRVLDLASGQWNAVDYSVDADDFDYAPRYSPDGKWLVFV 382 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 77/280 (27%), Gaps = 61/280 (21%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L M G LT + + + + + + D ++ YL + Sbjct: 389 DLWRMPASGGVPEQLTNEAAEQRGW-AWVDDGRTIVFGRRVDSEVRLYYL------DVER 441 Query: 252 RIGNFRSMILA--PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 R + A P S +G ++ + ++ V + +RL + + Sbjct: 442 RTLRDAGLDDAQWPAVSRHGGVLAFVHRRAQFG-VFKVPTDGGSAQRLFASSGRDGQPMA 500 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFS- 367 +PD Q+VF SDR G L+ D R I + P WS + Sbjct: 501 APDGRQLVFTSDRSGSFALWWADMQRPDSLRPIEGLRPEGRQAPDWSADSRHLLVVGRDE 560 Query: 368 ---------------------------------------------GEKFAIGVMKKDGSQ 382 ++ + + + Sbjct: 561 HGRTVIYEISPRDERLQALPVPAEQPLQALYGATEDQLLVVERDADQRTRLSLFDRSTQP 620 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 R L + + ++F+R G L+S+D Sbjct: 621 WRRLASIDGVSQARFDRGSGRVLFTRLAAGG----LWSVD 656 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 9/110 (8%) Query: 331 MQSNGSDQK--RISQDKEASYFDPVWSPQGDLIAF---TKFSGEKFAIGVMKKDGSQERL 385 ++ GS Q+ R+ P SP G +A+ + AI V + R Sbjct: 203 VRVIGSPQRPYRLITATSGFETYPTLSPDGSQVAYEGANEDGKGGGAIKVQTSGNAPARQ 262 Query: 386 LVE---DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 L+ ++ + P+WSP GR + F+R + G ++ G Sbjct: 263 LLAPPVGASDRFPSWSPDGREIAFARF-SAEGGCQVLIASATGGALRQAT 311 >gi|265752680|ref|ZP_06088249.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235866|gb|EEZ21361.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1084 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 107/270 (39%), Gaps = 33/270 (12%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 V + +R+L+ + L ++ + + Y + +V + TR D+ Sbjct: 256 TVTNFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDITRDDQNTIAD 310 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 NF + + S +GK+ V+ +++ N T+++T+T ++SPD+ Sbjct: 311 LNFSNGATSATVSPDGKQIAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTFSPDN 366 Query: 314 SQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + + S+R G +LY+ + +++ + + P +SP G +A Sbjct: 367 RTLAYASERNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELA 426 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDT 414 F + + V+ + + R + + + + +WSP G+ L F + D Sbjct: 427 FIEDRN---RLMVLNLETKKVRQVTDGATWFSTGGGFDYSWSPDGKWFTLEFIGNRH-DP 482 Query: 415 GSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 S + ++ G + Y + P+WV Sbjct: 483 YSDIGMVNAQGGKIINLTNSGYTSGSPRWV 512 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQIAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATTIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLETKKVRQVTDGATWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVNA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT + +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ + Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYNSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PSNGGTATQLTTQASYECNPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F +++G T +YS ++ Sbjct: 201 YNSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERNGGT-FNVYSFPIS 249 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 88/254 (34%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPSNGGTATQLTTQAS-YECNPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYNSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ +G F + Q V + + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERNGGTFNVYSFPISSPQSLETVTNFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECNPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 126/367 (34%), Gaps = 57/367 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D + Sbjct: 320 ATVSPDGKQIAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATTI-------EEEVLLPSDKTERTYPQFSPDGKELAFI- 428 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNF-----RSMILAPRFSSNGKRA---LISVQKDEAM 282 ED R+ +++ + +++ + +S +GK I + D Sbjct: 429 ---EDRNRLMVLNLET-KKVRQVTDGATWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYS 484 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVM 331 DI V+ Q LTN+ + + S + D + I+F ++R G L M Sbjct: 485 DIGMVNAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFM 544 Query: 332 QSNGSDQKRISQDKE----------------ASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + D+ R+S++ + + + + + Sbjct: 545 NQDAYDKFRLSKEDYELQKELEKEQKNTTETKKNGKKKGDNKEKSEEKKEEKVKDIVVEL 604 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--T 433 + RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 605 NNIEDRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLHKMD 662 Query: 434 PAYASDP 440 +A+ Sbjct: 663 AGWANMG 669 >gi|89071212|ref|ZP_01158398.1| hypothetical protein OG2516_13911 [Oceanicola granulosus HTCC2516] gi|89043254|gb|EAR49482.1| hypothetical protein OG2516_13911 [Oceanicola granulosus HTCC2516] Length = 272 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 16/205 (7%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++A + + VY + + S +S +G + + +D Sbjct: 71 SPDGTRLAISDHSQHGKSSVYTLPVSGGTPVEVTPRQPSWWHG--WSPDGGAIVYAAARD 128 Query: 280 EAMDI-YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 Y L+ L +S D + + F +R+G L+ ++ +G D Sbjct: 129 GGPVAPYIAPLEGGEELCLATGFDHCDGPDFSADGAWVWFNGERDGSVDLWRVRPDGRDL 188 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFT--------KFSGEKFAIGVMKKDGSQERLLVE-- 388 +R++ +F P SP G + + G A+ +M +DG R LV Sbjct: 189 QRMTDGDSVDWF-PHPSPDGAHVVWLAYPPGTQGHPGGLDVALWLMPQDGGAGRELVRLH 247 Query: 389 --DSNLQAPTWSPSGRSLIFSRKKD 411 + P+W+P GR F R D Sbjct: 248 GGQGTINVPSWAPDGRRFAFVRYAD 272 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 81/199 (40%), Gaps = 13/199 (6%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 ++ S S K+S+ + G +TP Q + +SP+ + YA D + Sbjct: 77 LAISDHSQHGKSSVYTLPVSGGTPVEVTPR--QPSWWHGWSPDGGAIVYAAARDGGPVAP 134 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y+ F P FS++G + ++D ++D++ V +R+T+ Sbjct: 135 YIAPLEGGEELCLATGFD-HCDGPDFSADGAWVWFNGERDGSVDLWRVRPDGRDLQRMTD 193 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQ--------LYVMQSNGSDQKRISQ--DKEASY 349 ++ SPD + +V+ + G + L++M +G + + + + + Sbjct: 194 GDSVDWFPHPSPDGAHVVWLAYPPGTQGHPGGLDVALWLMPQDGGAGRELVRLHGGQGTI 253 Query: 350 FDPVWSPQGDLIAFTKFSG 368 P W+P G AF +++ Sbjct: 254 NVPSWAPDGRRFAFVRYAD 272 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 28/276 (10%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K+ +C+ D + + + D + P + P+ + D + RV L ++ Sbjct: 2 KSEICIAGLD--SSVTVVLAHDGHVEAPNWHPDGYLIV---NGDGRLFRVDLDAPSLEAI 56 Query: 250 PKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + S +G R IS + +Y++ + +T + Sbjct: 57 DTGFATRCNNDHG--LSPDGTRLAISDHSQHGKSSVYTLPVSGGTPVEVT-PRQPSWWHG 113 Query: 309 YSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD IV+ + R+G Y+ G ++ ++ + P +S G + F Sbjct: 114 WSPDGGAIVYAAARDGGPVAPYIAPLEGGEELCLATGFDHCD-GPDFSADGAWVWFNGER 172 Query: 368 GEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGS------KLYS 420 + ++ DG + + + DS P SP G +++ G G L+ Sbjct: 173 DGSVDLWRVRPDGRDLQRMTDGDSVDWFPHPSPDGAHVVWLAYPPGTQGHPGGLDVALWL 232 Query: 421 IDLNG----------RNETLINTPAYASDPQWVGFM 446 + +G + IN P++A D + F+ Sbjct: 233 MPQDGGAGRELVRLHGGQGTINVPSWAPDGRRFAFV 268 >gi|297183395|gb|ADI19529.1| dipeptidyl aminopeptidases/acylaminoacyl-peptidases [uncultured Chloroflexi bacterium HF0770_09E03] Length = 462 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 110/303 (36%), Gaps = 64/303 (21%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 V+ ++SL +M+ DG R+L P++SP+ ++A+ ++++ Sbjct: 64 VNDNWESSLWIMNVDGKKNRFLVDGSS-----PKWSPDGTRIAFLASGKPGGTQLFVRWM 118 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISV---------------------------- 276 + A +I +S +G + Sbjct: 119 DAEGAVSQISRVTDSPSNITWSPDGTSIAFQMVVPPDDGELWDINMPPKPNEADWTGNPT 178 Query: 277 -------QKD-------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 ++D I+ + RLT+ + + S + PD I+FES R Sbjct: 179 IIERLNYRRDRVGYHPKGYRHIFIIPADGGTPHRLTHGDWHHDSYEWMPDGKAIIFESLR 238 Query: 323 -------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKF-- 371 + ++Y + N + +++S+ K PV SP G IA+T +S + + Sbjct: 239 VEDAEYQWRESEIYSVDVNSGEIRQLSKRK-GPDRGPVPSPDGRYIAYTGHDWSDDTYIE 297 Query: 372 -AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + MK DGS+ + TWS G + ++ +G S LY L+G+ Sbjct: 298 EGLYFMKADGSKPERIAGEMGRRPGNLTWSEDGSGVYYNAAMEGT--SNLYFAPLSGKPR 355 Query: 429 TLI 431 + Sbjct: 356 PVT 358 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 62/272 (22%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQK 278 SP+ Q++ Y + + + I + F +P++S +G R + K Sbjct: 48 SPDGQQIIYTRRWVDAVNDNWESSLWIMNVDGKKNRFLVDGSSPKWSPDGTRIAFLASGK 107 Query: 279 DEAMDIYS--VDLQS--NATERLTNTLFINISASYSPDSSQIVFE--------------- 319 ++ +D + + R+T++ +SPD + I F+ Sbjct: 108 PGGTQLFVRWMDAEGAVSQISRVTDSPSNIT---WSPDGTSIAFQMVVPPDDGELWDINM 164 Query: 320 ------SDREGKE---------------------QLYVMQSNGSDQKRISQDKEASYFDP 352 +D G ++++ ++G R++ + + Sbjct: 165 PPKPNEADWTGNPTIIERLNYRRDRVGYHPKGYRHIFIIPADGGTPHRLTH-GDWHHDSY 223 Query: 353 VWSPQGDLIAFTKFSGEK-------FAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSL 404 W P G I F E I + + + R L + + P SP GR + Sbjct: 224 EWMPDGKAIIFESLRVEDAEYQWRESEIYSVDVNSGEIRQLSKRKGPDRGPVPSPDGRYI 283 Query: 405 IFSRKKDGDTGS---KLYSIDLNGRNETLINT 433 ++ D LY + +G I Sbjct: 284 AYTGHDWSDDTYIEEGLYFMKADGSKPERIAG 315 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 90/272 (33%), Gaps = 60/272 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIR--YLTPSRDQILFEPRFSPNQQKVAYATY- 231 +RI F++ G MD +GA + +T S I +SP+ +A+ Sbjct: 98 TRIAFLASGKPGGTQLFVRW-MDAEGAVSQISRVTDSPSNI----TWSPDGTSIAFQMVV 152 Query: 232 ---------------------------------------DDEDILRVYLMDTRIDRAPKR 252 R + P R Sbjct: 153 PPDDGELWDINMPPKPNEADWTGNPTIIERLNYRRDRVGYHPKGYRHIFIIPADGGTPHR 212 Query: 253 IGNFRSMILAPRFSSNGKRALI-SVQKDEA------MDIYSVDLQSNATERLTNTLFINI 305 + + + + +GK + S++ ++A +IYSVD+ S +L+ + Sbjct: 213 LTHGDWHHDSYEWMPDGKAIIFESLRVEDAEYQWRESEIYSVDVNSGEIRQLSKRKGPDR 272 Query: 306 SASYSPDSSQIVFE----SDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SPD I + SD +E LY M+++GS +RI+ + + WS G Sbjct: 273 GPVPSPDGRYIAYTGHDWSDDTYIEEGLYFMKADGSKPERIAGEMGRRPGNLTWSEDGSG 332 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + + G + R + + ++ Sbjct: 333 VYYNAAMEGTSNLYFAPLSG-KPRPVTKGKHM 363 >gi|307331447|ref|ZP_07610564.1| amidohydrolase [Streptomyces violaceusniger Tu 4113] gi|306882890|gb|EFN13959.1| amidohydrolase [Streptomyces violaceusniger Tu 4113] Length = 1099 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 104/300 (34%), Gaps = 44/300 (14%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 + KG I F S ++ + + D D +R + + L P SP+ +KV Sbjct: 338 SDRKGVAYEEIPF-SATLPIDRPRYRVKRYDFDSGGVRPV-----RGLHLPALSPDGRKV 391 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 A+A + +++ D RAP+R+ +LAP ++ +G+ + + +D + Sbjct: 392 AFAALN-----SLWVADVSGGRAPRRVVRAAPTRYLLAPTWTPDGRALVYADDRDGLLAA 446 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 DL S L + + SPD +I D G L + + Sbjct: 447 RRRDLASGEETVL--ASGGRVHPALSPDGKRIA-CVDMSGNLVLRDLDAGTERVLAAPMG 503 Query: 345 KEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERL-------LVEDS 390 P WSP G +A +F I V+ D R + D Sbjct: 504 AGGLPGRPSWSPDGRYVALCDRNRLNQRFREGYNLIRVIDTDTGTARQHAVAPHTSLSDR 563 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL------NGRNETLINTPAYASDPQWVG 444 P WSP GR + S L+ + + +G L + A P W G Sbjct: 564 YDSGPVWSPDGRHMALI------VESALWLLPVRADGTPDGAPRRLTDEAAD--HPSWSG 615 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 89/249 (35%), Gaps = 35/249 (14%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++ ++ V R + P +S +GK + + Sbjct: 67 SPSGDRMI------AEVQNVLWSVARKGGEAVPLTPADLEPTRPVYSPDGKLLAVCAYRG 120 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLYVMQS 333 I+++ + + T+ + + ++SPD ++I F S+R G +++V++ Sbjct: 121 GGFHIWTLRPDGSGLRQRTDGPWDDRGPAWSPDGTRIAFASERGGDPVAGSPYRIWVLEV 180 Query: 334 NGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTK-----FSGEKFAIGVMKKD 379 + R++ QD FDP WS G+ + F + + + ++ D Sbjct: 181 ATGELTRLTGADGQDGPLQDGAWEDFDPTWSADGERVLFVRGALAGTTLNARTVASVRAD 240 Query: 380 GSQERL-----LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 G+ + + P+ S G L + R S ++ + G + Sbjct: 241 GTGPVTAEHTDPTAGAQVMTPSVSADG-HLAYLRTTAAPAAS--CTLVVAGEPVAITGDV 297 Query: 435 AYASDPQWV 443 P+WV Sbjct: 298 QPVP-PRWV 305 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 102/286 (35%), Gaps = 40/286 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANI--RYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 L V+ NSL V D G R + + + L P ++P+ + + YA DD D Sbjct: 384 LSPDGRKVAFAALNSLWVADVSGGRAPRRVVRAAPTRYLLAPTWTPDGRALVYA--DDRD 441 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 L + + + P S +GKR D + ++ DL + Sbjct: 442 GLLAARRRDLASGEETVLAS--GGRVHPALSPDGKRIACV---DMSGNLVLRDLDAGTER 496 Query: 296 RLTNTLF---INISASYSPDSSQIVFE-------SDREGKEQLYVMQSNGSDQKRI---- 341 L + + S+SPD + REG + V+ ++ ++ Sbjct: 497 VLAAPMGAGGLPGRPSWSPDGRYVALCDRNRLNQRFREGYNLIRVIDTDTGTARQHAVAP 556 Query: 342 -SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV--MKKDG---SQERLLVEDSNLQAP 395 + + PVWSP G +A S A+ + ++ DG R L +++ P Sbjct: 557 HTSLSDRYDSGPVWSPDGRHMALIVES----ALWLLPVRADGTPDGAPRRLTDEAAD-HP 611 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +WS R +++ +L +D+ + P P+ Sbjct: 612 SWSGDSRHVLYLS------AGRLRLLDVERGTARTVRVPLDHRRPR 651 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 97/318 (30%), Gaps = 79/318 (24%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRID 247 + + DG+ +R T P +SP+ ++A+A+ D R+++++ Sbjct: 125 IWTLRPDGSGLRQRTDG-PWDDRGPAWSPDGTRIAFASERGGDPVAGSPYRIWVLEVATG 183 Query: 248 RAPKRIGNFRSM---------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-- 296 + G P +S++G+R L A+ +++ ++ A+ R Sbjct: 184 ELTRLTGADGQDGPLQDGAWEDFDPTWSADGERVLFVR---GALAGTTLNARTVASVRAD 240 Query: 297 ----LT------NTLFINISASYSPDSSQIVFESDR----------EGKEQLYVMQSNGS 336 +T ++ S S D + G+ Sbjct: 241 GTGPVTAEHTDPTAGAQVMTPSVSADGHLAYLRTTAAPAASCTLVVAGEPVAITGDVQPV 300 Query: 337 DQKRISQDK-----EASYFDPVWSP-------------QGDLIAFTK--------FSGEK 370 + +S+D+ + SP +A+ + + Sbjct: 301 PPRWVSRDELLLTVNGRFRVFRMSPAVRSGAAGSDEKSDRKGVAYEEIPFSATLPIDRPR 360 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNET 429 + + D R + L P SP GR + F+ + L+ D++ GR Sbjct: 361 YRVKRYDFDSGGVRPV---RGLHLPALSPDGRKVAFAA------LNSLWVADVSGGRAPR 411 Query: 430 LINTPAYAS---DPQWVG 444 + A P W Sbjct: 412 RVVRAAPTRYLLAPTWTP 429 >gi|119505342|ref|ZP_01627416.1| acylaminoacyl-peptidase [marine gamma proteobacterium HTCC2080] gi|119458797|gb|EAW39898.1| acylaminoacyl-peptidase [marine gamma proteobacterium HTCC2080] Length = 698 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 57/291 (19%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + L +++ DG N R LT S + P++SP+ Q++AY ++ +Y+ Sbjct: 73 KDKRRGDLWLVNTDGENHRKLT-SFEGNETSPQWSPDGQRIAYVRRAGKEGAEIYV-HWL 130 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--------------------------- 278 + RI R+S +G ++ Sbjct: 131 VSGHSARITRVEGSPSHLRWSPSGAHIAFAMTAKSPPPVLAKRPSAPEGAKWADKPRVTD 190 Query: 279 -------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-- 323 +Y + +L++ F + S + D +V +R Sbjct: 191 RLYHERDGSGYVEPGFSHVYVIPADGGTPRQLSDGNFHHRSPEWRSDGQALVVTGNRSED 250 Query: 324 -----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----FAI 373 ++Y + + + ++ P+ SP G +A+ F+ ++ + Sbjct: 251 WQYDFRNSEVYTIDLGSGNIQSLTSIS-GPDDSPLPSPDGQWVAWLGFTDKRQAYQVSRL 309 Query: 374 GVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 V + DGS R L+ D ++ A W+ + + G T +ID Sbjct: 310 RVAEPDGSNVRELLVSLDRSVDAIQWAADAAGIYYQYDDRGRTKIGYVTID 360 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 38/263 (14%) Query: 212 QILFEPRFSPNQQKVAYATYD---DEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSS 267 + +P+ SP+ ++V Y +D R L D +++ +F +P++S Sbjct: 48 EWASDPQISPDGRQVVYRRMGFDMMKDKRRGDLWLVNTDGENHRKLTSFEGNETSPQWSP 107 Query: 268 NGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +G+R + E +IY L S + R+T +SP + I F + Sbjct: 108 DGQRIAYVRRAGKEGAEIYVHWLVSGHSARITRVEGSPSHLRWSPSGAHIAFAMTAKSPP 167 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------AIGVMKKDG 380 + KR S + A + D P+ + + G + + V+ DG Sbjct: 168 PVL--------AKRPSAPEGAKWADK---PRVTDRLYHERDGSGYVEPGFSHVYVIPADG 216 Query: 381 SQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT-----GSKLYSIDL-NGRNETLINT 433 R L + + ++P W G++L+ + + D S++Y+IDL +G ++L + Sbjct: 217 GTPRQLSDGNFHHRSPEWRSDGQALVVTGNRSEDWQYDFRNSEVYTIDLGSGNIQSLTSI 276 Query: 434 PAYASDP---------QWVGFMD 447 P W+GF D Sbjct: 277 SGPDDSPLPSPDGQWVAWLGFTD 299 >gi|228470863|ref|ZP_04055710.1| MdsD protein [Porphyromonas uenonis 60-3] gi|228307430|gb|EEK16440.1| MdsD protein [Porphyromonas uenonis 60-3] Length = 1097 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 33/211 (15%) Query: 262 APRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 PR+ S +G + Q D IY VD LT + ++SPD + Sbjct: 30 TPRWLRYAQISPDGNQIAFCYQGD----IYIVDAIGGEARLLTGSDGYESHPTWSPDGKR 85 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------- 364 I F S+R+G +Y M + G D KRI+ S+ ++P G I + Sbjct: 86 IAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHTVECYTPDGRFIIMSEALQQPATSAL 145 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSG-RSLI---------FSRKKDGDT 414 SG + ++ DG +L L+A T+S G R + + + Sbjct: 146 NPSGILSQLYMIPVDGGTP-MLYNARPLEAVTFSHRGDRYVAQDIKGFENKWRKHHTSSV 204 Query: 415 GSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 +Y +D +G P P + Sbjct: 205 TRDIYIVDPKSGVTTACTLEPGEDLSPVFGP 235 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 107/303 (35%), Gaps = 38/303 (12%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + ++ G + + F+SE S + + + +T R+ + S + Sbjct: 227 EDLSPVFGPDDQTVYFLSERGKSNSLN--VWKQRIGEQTAQQVTSFRNHPVRFLSISRSG 284 Query: 224 Q-KVAY----ATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALI 274 + AY T + + + R D+ +R + P SS+GK+ Sbjct: 285 RLCFAYDGDLYTMTEGRSPQKVQITLRSEGPKDKVYRRTASSGGSSFTP--SSDGKQLAF 342 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 ++ D +Y ++ T+R+T + S ++SPDS +V++S R+GK LY Sbjct: 343 IMRGD----VYVTSVEHGTTKRITQSSGAEESVTWSPDSKTLVYDSRRDGKHILYKATIA 398 Query: 335 GS-----------DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 ++ + + + P +SP G IAF G++ I + Sbjct: 399 SDKELDFASATIIKEEPLMPECKMEQALPQYSPDGKQIAFV---GDRKCIYTYDIASKKL 455 Query: 384 RLLVEDSN------LQAPTWSPSGRSLIFSRKKDGDTG-SKLYSIDLNGRNETLINTPAY 436 + + + WSP R + F + + + G + Y Sbjct: 456 TQVTSGKDQPEMHGYISFEWSPDSRWIAFEYTPNRHAPFGDVGLVRATGGEVINLTNTGY 515 Query: 437 ASD 439 S+ Sbjct: 516 FSN 518 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 44/236 (18%) Query: 217 PRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 PR+ SP+ ++A+ D +Y++D I + + P +S +GK Sbjct: 31 PRWLRYAQISPDGNQIAFCYQGD-----IYIVD-AIGGEARLLTGSDGYESHPTWSPDGK 84 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVF--------ES- 320 R +D IY++ +R+T+ + Y+PD I+ S Sbjct: 85 RIAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHTVECYTPDGRFIIMSEALQQPATSA 144 Query: 321 -DREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA------ 372 + G QLY++ +G +S +GD + + F Sbjct: 145 LNPSGILSQLYMIPVDGGTP---MLYNARPLEAVTFSHRGDR--YVAQDIKGFENKWRKH 199 Query: 373 --------IGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 I ++ +E +P + P +++ F ++ ++ Sbjct: 200 HTSSVTRDIYIVDPKSGVTTACTLEPGEDLSPVFGPDDQTVYFLSERGKSNSLNVW 255 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 102/343 (29%), Gaps = 121/343 (35%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + ++D G R L D P +SP+ +++A+ + D +Y M + + Sbjct: 50 YQGDIYIVDAIGGEAR-LLTGSDGYESHPTWSPDGKRIAFMSNRDGH-RSIYTM-SALGG 106 Query: 249 APKRIGNFRSMILAP-RFSSNGKRALIS----------VQKDEAM-DIYSVDLQSNAT-- 294 KRI + ++ +G+ ++S + + +Y + + Sbjct: 107 DVKRITHHSGNSHTVECYTPDGRFIIMSEALQQPATSALNPSGILSQLYMIPVDGGTPML 166 Query: 295 -----------------------------------ERLTNTLFI---------------- 303 +T ++I Sbjct: 167 YNARPLEAVTFSHRGDRYVAQDIKGFENKWRKHHTSSVTRDIYIVDPKSGVTTACTLEPG 226 Query: 304 -NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--KRISQDKEASYFDPVWSPQGDL 360 ++S + PD + F S+R L V + +Q ++++ + S G L Sbjct: 227 EDLSPVFGPDDQTVYFLSERGKSNSLNVWKQRIGEQTAQQVTSFRNHPVRFLSISRSGRL 286 Query: 361 ------------------------------------------IAFTKFSGEKFAIGVMKK 378 +FT S K +M+ Sbjct: 287 CFAYDGDLYTMTEGRSPQKVQITLRSEGPKDKVYRRTASSGGSSFTPSSDGKQLAFIMRG 346 Query: 379 D--------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 D G+ +R+ ++ TWSP ++L++ ++DG Sbjct: 347 DVYVTSVEHGTTKRITQSSGAEESVTWSPDSKTLVYDSRRDGK 389 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSP 399 ++Q+ SP G+ IAF I ++ G + RLL D PTWSP Sbjct: 26 VAQETPRWLRYAQISPDGNQIAFCYQGD----IYIVDAIGGEARLLTGSDGYESHPTWSP 81 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 G+ + F +DG +Y++ G + I + S Sbjct: 82 DGKRIAFMSNRDGHR--SIYTMSALGGDVKRITHHSGNSH 119 Score = 36.5 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 18/237 (7%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSL 193 KD+ ++ G F R IA + + + + ++ + + Sbjct: 462 KDQPEMHGYISFEWSPDSRWIAFEYTPNRHAPFGDVGLVRATGGEVINLTNTGYFSNLTG 521 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 VM G N T R + + A+ + + + M R Sbjct: 522 WVM---GGNAILFTSDRYGMRNHASW--GSMSDAFLVFLNRKAYEKFNMTPEERDLYDRA 576 Query: 254 GNFR---SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE--RLTNTLFINISAS 308 G P ++ K+ + V+++ RLT A Sbjct: 577 GLDTLQYGSDPVPAENAKKKK--------DETKPIIVEVKGLEDRIVRLTPNSSDLADAY 628 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 D + + S EG L+ + + Q + + +P+GD I Sbjct: 629 VDADGKNLYYLSAFEGGYNLWHTDLRKGNTSMLRQLELSGSAYMRPTPKGDKIFVVS 685 >gi|149193986|ref|ZP_01871084.1| translocation protein TolB precursor [Caminibacter mediatlanticus TB-2] gi|149135939|gb|EDM24417.1| translocation protein TolB precursor [Caminibacter mediatlanticus TB-2] Length = 383 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 120/304 (39%), Gaps = 22/304 (7%) Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSP-ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 L VE++ KD I+ K++ S+ A + + H DI + F R + S Sbjct: 77 LTVEYQ----KDSNTILIKRYHSNTYAFFPFLVHRAVYDINEFFKLPSAKFLIRKVIYSL 132 Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V + ++ + D + R L + P+++ N+Q Y T + + +Y Sbjct: 133 LVAP--KEANIYLADYTLSYKRRLLAG--GLNVFPKWADNKQTTIYFTRYERKPV-LYKF 187 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + K + + + M++ N + L+++ + D+Y DL + ++TN Sbjct: 188 NIYTGKKEKILSS-QGMLIVSDVKDN--KLLLTLAPNGQPDVYLFDLNTKKLTKITNYQG 244 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 I+++ + +I+F SDR G ++ R+ + + L+ Sbjct: 245 IDVNGKFW--GDKIIFVSDRYGNPYVFQKDLTTGAVSRVLYHGKNQVGVDTYMDN--LVI 300 Query: 363 FTK-----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 T+ F F + ++ + + L + P +S G S++F ++ + + Sbjct: 301 STRETANAFKPNTFNLFLVNANDDSLKRLTMNGQNMFPNFSVDGNSIMFIKRVNFSSKIG 360 Query: 418 LYSI 421 + + Sbjct: 361 IIRL 364 >gi|218441689|ref|YP_002380018.1| hypothetical protein PCC7424_4792 [Cyanothece sp. PCC 7424] gi|218174417|gb|ACK73150.1| WD-40 repeat protein [Cyanothece sp. PCC 7424] Length = 1363 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 15/260 (5%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 SG ++ + + DQ + FSPN + +A A+ D + L + + Sbjct: 762 SGSDDKTIKLWNVQTGQQIRTLRGHDQSVLSLSFSPNGKMIASASRDK----IIKLWNVQ 817 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFIN 304 + + + + + FS +GK S +D+ + ++ ++Q+ R L Sbjct: 818 TGQPIRTLRGHDGYVYSVSFSPDGKMIA-SSSRDKTIKLW--NVQTGQQIRALRGHDGYV 874 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S S+SPD + S + + + R + + +S G +A + Sbjct: 875 YSVSFSPDGKTLASGSS---DKTIKLWNVQTGQPIRTLRGHNGYVYSLSFSLDGKRLA-S 930 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + I + K+ + + ++SP G++L D KL+ + Sbjct: 931 GSADKTIKIWNVSKETEILTFNGHRGYVYSVSYSPDGKTLASGSD---DKTIKLWDVITG 987 Query: 425 GRNETLINTPAYASDPQWVG 444 TL P Y + Sbjct: 988 TEMLTLYGHPNYVRSVSYSP 1007 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 113/334 (33%), Gaps = 44/334 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD- 172 G+ + G D + +LWDV +++ + P R ++++ S + +K Sbjct: 967 GKTLASGSDDKTI--KLWDVITGTEML--TLYGHPNYVRSVSYSPDGKTLASSSEDKTIK 1022 Query: 173 ------------FNSRILFV--------SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 F +V +++ SG ++ + D D Sbjct: 1023 LWDVSTQTEIRIFRGHSGYVYSISLSNDGKTLASGSGDKTIKLWDVSTGIEIRTLKGHDD 1082 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + FSP+ + +A ++ D L + L D + + + + + FS +GK Sbjct: 1083 YVRSVTFSPDGKTLASSSND----LTIKLWDVSTGKEIRTLKEHHGWVRSVSFSPDGKMI 1138 Query: 273 LISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 S D + ++ D+++ R L S S+SPD I SD + + Sbjct: 1139 A-SGSDDLTIKLW--DVKTGKEIRTLNGHHDYVRSVSFSPDGKMIASSSD---DLTIKLW 1192 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--ED 389 + R + +SP G +A I + +E + D Sbjct: 1193 DVKTGKEIRTLNGHHDYVRNVRFSPDGKTLA---SGSNDLTIKLWDVKTGKEIYTLNGHD 1249 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 ++ +WS G+ L D K++ + Sbjct: 1250 GYVRRVSWSKDGKRLA---SGSADKTIKIWDLST 1280 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 118/369 (31%), Gaps = 45/369 (12%) Query: 104 NSLGAQVLVTGRVIKEGKDRLRVE------FRLWDVKDRKQIIGKK------FFSSPA-S 150 G V V ++ +LW+V+ +QI + + S + Sbjct: 824 TLRGHDGYVY-SVSFSPDGKMIASSSRDKTIKLWNVQTGQQIRALRGHDGYVYSVSFSPD 882 Query: 151 WRKIAHTISDDIY-----------QSITGEKGDFNS-RILFVSESVVSGIIKNSLCVMDR 198 + +A SD +++ G G S + + SG ++ + + Sbjct: 883 GKTLASGSSDKTIKLWNVQTGQPIRTLRGHNGYVYSLSFSLDGKRLASGSADKTIKIWNV 942 Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 ++ +SP+ + +A + D + L D + + Sbjct: 943 SKETEILTFNGHRGYVYSVSYSPDGKTLASGSDDK----TIKLWDVITGTEMLTLYGHPN 998 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIV 317 + + +S +GK S +D+ + ++ D+ + R+ S S S D + Sbjct: 999 YVRSVSYSPDGKTLA-SSSEDKTIKLW--DVSTQTEIRIFRGHSGYVYSISLSNDGKTLA 1055 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 S G + + + + + R + + +SP G +A + I + Sbjct: 1056 SGS---GDKTIKLWDVSTGIEIRTLKGHDDYVRSVTFSPDGKTLASSSND---LTIKLWD 1109 Query: 378 KDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 +E + +++ ++SP G+ + D KL+ + TL Sbjct: 1110 VSTGKEIRTLKEHHGWVRSVSFSPDGKMIASGSD---DLTIKLWDVKTGKEIRTLNGHHD 1166 Query: 436 YASDPQWVG 444 Y + Sbjct: 1167 YVRSVSFSP 1175 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 19/246 (7%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 R + + + FS + + +A + D + L + + + + + +L Sbjct: 736 RERNRLEGHNNYVTKVSFSSDGKMIASGSDDK----TIKLWNVQTGQQIRTLRGHDQSVL 791 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFES 320 + FS NGK S +D+ + ++ ++Q+ R L S S+SPD I S Sbjct: 792 SLSFSPNGKMIA-SASRDKIIKLW--NVQTGQPIRTLRGHDGYVYSVSFSPDGKMIA-SS 847 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 R+ + + + Q R + + + +SP G +A I + Sbjct: 848 SRD--KTIKLWNVQTGQQIRALRGHDGYVYSVSFSPDGKTLASGSSDKT---IKLWNVQT 902 Query: 381 SQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 Q + + + + ++S G+ L D K++++ T Y Sbjct: 903 GQPIRTLRGHNGYVYSLSFSLDGKRLA---SGSADKTIKIWNVSKETEILTFNGHRGYVY 959 Query: 439 DPQWVG 444 + Sbjct: 960 SVSYSP 965 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 106/310 (34%), Gaps = 40/310 (12%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G + +LWDV +I + R + T S D Sbjct: 1051 GKTLASGSGDKTI--KLWDVSTGIEI--RTLKGHDDYVRSV--TFSPD------------ 1092 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +++ S ++ + D + FSP+ + +A + D Sbjct: 1093 -------GKTLASSSNDLTIKLWDVSTGKEIRTLKEHHGWVRSVSFSPDGKMIASGSDD- 1144 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 L + L D + + + + + + FS +GK S D + ++ D+++ Sbjct: 1145 ---LTIKLWDVKTGKEIRTLNGHHDYVRSVSFSPDGKMIA-SSSDDLTIKLW--DVKTGK 1198 Query: 294 TER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 R L + +SPD + S+ + + + + Sbjct: 1199 EIRTLNGHHDYVRNVRFSPDGKTLASGSN---DLTIKLWDVKTGKEIYTLNGHDGYVRRV 1255 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 WS G +A + + + I + L D ++++ T+SP G++LI Sbjct: 1256 SWSKDGKRLA-SGSADKTIKIWDLSTKTELFTLKGYDESVRSVTFSPDGKTLISGSD--- 1311 Query: 413 DTGSKLYSID 422 D+ KL+ +D Sbjct: 1312 DSTIKLWYLD 1321 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 13/204 (6%) Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++ ++ R R+ + + FSS+GK S D+ + ++ ++Q+ Sbjct: 724 VINALQLNLAQRRERNRLEGHNNYVTKVSFSSDGKMIA-SGSDDKTIKLW--NVQTGQQI 780 Query: 296 R-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 R L +S S+SP+ I S + + + R + + + + Sbjct: 781 RTLRGHDQSVLSLSFSPNGKMIASASR---DKIIKLWNVQTGQPIRTLRGHDGYVYSVSF 837 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGD 413 SP G +IA + V G Q R L D + + ++SP G++L D Sbjct: 838 SPDGKMIASSSRDKTIKLWNVQ--TGQQIRALRGHDGYVYSVSFSPDGKTLA---SGSSD 892 Query: 414 TGSKLYSIDLNGRNETLINTPAYA 437 KL+++ TL Y Sbjct: 893 KTIKLWNVQTGQPIRTLRGHNGYV 916 >gi|149279157|ref|ZP_01885290.1| putative exported peptidase [Pedobacter sp. BAL39] gi|149230159|gb|EDM35545.1| putative exported peptidase [Pedobacter sp. BAL39] Length = 1080 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 34/248 (13%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P SP+ + +A+ D +YL+ + + + + P +S +G Sbjct: 22 NPLWMRYPAISPDGKNIAFGYKGD-----IYLV-SAAGGQATPLTINEAQDMMPVWSPDG 75 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-- 327 K + + D++S+ + RLT + +SPD +++F S R Q Sbjct: 76 KTLAFASNRYGNFDVFSIPVAGGNPVRLTFNSANDYPYDFSPDGKEVIFGSARNSTAQNV 135 Query: 328 ----------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TK 365 LY ++ NGS IS A ++ G I F Sbjct: 136 RFASPRVFQNLYSVKLNGSRPHLISA---AGMEKAKFNQDGSQIVFEDRKGFEDAWRKHH 192 Query: 366 FSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I +M + R L + + P +S +S+ + +K G+ + D + Sbjct: 193 TSSVTRDIWIMDVKKNTYRKLTSFEGEDREPLYSSDQQSIYYLSEKAGNQNLFKMAADGS 252 Query: 425 GRNETLIN 432 G L Sbjct: 253 GTALQLST 260 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 66/356 (18%), Positives = 127/356 (35%), Gaps = 62/356 (17%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISD------------DIYQSITGEKGDFNSRILFVSE 182 D QI+ + +WRK H S + Y+ +T +G+ + + Sbjct: 172 DGSQIVFEDRKGFEDAWRK--HHTSSVTRDIWIMDVKKNTYRKLTSFEGEDREPLYSSDQ 229 Query: 183 SV----VSGIIKNSLCVMDRDGAN------------IRYLTPSRDQILFEPRFSPNQQKV 226 +L M DG+ +R+L+ + D L FS N + Sbjct: 230 QSIYYLSEKAGNQNLFKMAADGSGTALQLSTFKDNPVRHLSRANDNTLC---FSQNGEIY 286 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + L+V +++ D K + S NGK +I+ Sbjct: 287 TFMENGTPTKLKVSILNDGRDNIVKT-EPVNGNVTEFVLSPNGKEIAFV----NRGEIFV 341 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ--- 343 ++S T+++T T S +SPDS +++ ++R +Y D+ Sbjct: 342 TGVESGQTKQITRTAAQERSVQWSPDSKSLIYATERNNSWDIYRSTIQQKDEPYFFAATV 401 Query: 344 -------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 A F P++SP G IA+ + + V Q R L+ + + + + Sbjct: 402 INTEPVIQTAAEEFQPLYSPDGKEIAYVENRN---ILKVYNIKSKQTRTLLPEGHNHSYS 458 Query: 397 -------WSPSGRSLIFSRKKDG---DTGSKLYSIDLNGRNETLINTPAYASDPQW 442 WSP + L+ + ++G ++ + L D +G+ +N+ S +W Sbjct: 459 DGDWSFAWSPDSKWLV-TDDQNGHMFNSHAALIKADGSGKITYPVNSGFGESGNKW 513 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 29/240 (12%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 DG + T + + E SPN +++A+ + +++ + K+I + Sbjct: 304 DGRDNIVKTEPVNGNVTEFVLSPNGKEIAFVNRGE-----IFVTGVESGQ-TKQITRTAA 357 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS---------- 308 + ++S + K + + +++ + DIY +Q IN Sbjct: 358 QERSVQWSPDSKSLIYATERNNSWDIYRSTIQQKDEPYFFAATVINTEPVIQTAAEEFQP 417 Query: 309 -YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-----SYFDPVWSPQGDLIA 362 YSPD +I + +R L V + + + + WSP + Sbjct: 418 LYSPDGKEIAYVENR---NILKVYNIKSKQTRTLLPEGHNHSYSDGDWSFAWSPDSKWLV 474 Query: 363 FTKFSGEKF--AIGVMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +G F ++K DGS + + W+ +G+ + + K+G + Sbjct: 475 TDDQNGHMFNSHAALIKADGSGKITYPVNSGFGESGNKWALNGKMMTWLSSKNGRKSLAI 534 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 47/286 (16%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + ++ G LT + P +SP+ + +A+A+ + V+ + Sbjct: 42 YKGDIYLVSAAGGQATPLTI-NEAQDMMPVWSPDGKTLAFASNRYGN-FDVFSIPVAGGN 99 Query: 249 APKRIGNFRSMILAP-RFSSNGKRALISVQKDEAMD------------IYSVDLQSNATE 295 + F S P FS +GK + ++ +YSV L + Sbjct: 100 PVRL--TFNSANDYPYDFSPDGKEVIFGSARNSTAQNVRFASPRVFQNLYSVKLNGSRPH 157 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRIS 342 L + + A ++ D SQIVFE DR+G +++M + ++++ Sbjct: 158 -LISAAGME-KAKFNQDGSQIVFE-DRKGFEDAWRKHHTSSVTRDIWIMDVKKNTYRKLT 214 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-----------N 391 E +P++S I + + M DGS L + N Sbjct: 215 S-FEGEDREPLYSSDQQSIYYLSEKAGNQNLFKMAADGSGTALQLSTFKDNPVRHLSRAN 273 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 +S +G I++ ++G SI +GR+ + P Sbjct: 274 DNTLCFSQNGE--IYTFMENGTPTKLKVSILNDGRDNIVKTEPVNG 317 >gi|312198255|ref|YP_004018316.1| serine/threonine protein kinase [Frankia sp. EuI1c] gi|311229591|gb|ADP82446.1| serine/threonine protein kinase [Frankia sp. EuI1c] Length = 698 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 23/222 (10%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G ++ + V + + + DG + R L S D P +SP+ ++AY Sbjct: 476 GTGDAPSVAADGRVAYAGVGGQIVTVRPDGTDARQLATSGDSSAEYPAWSPDGTQIAY-- 533 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + +YLM A +R+ + + A +S +G+ + + ++ + V + Sbjct: 534 --FRNTGGLYLMQADGTGA-RRVASVHGLETA--WSPDGREIVF--RDPDSQTLKIVSMA 586 Query: 291 SNATERLT---NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + LT + I + S+SPD IVF SD G +Y + +G+ +++ Sbjct: 587 DGSVRALTGAPHDGAIPVEPSWSPDGKTIVFGSDDGG---IYAIAPDGTGLHQLAAAGS- 642 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKF-----AIGVMKKDGSQER 384 + P WSP G ++ S F + MK DGS R Sbjct: 643 --WHPTWSPDGRVVFVRDTSARTFFSTTGRVESMKLDGSDVR 682 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 103/272 (37%), Gaps = 29/272 (10%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 ++F + S I + + V+ DG + T P + + +VAYA Sbjct: 447 LVFKRFAADSSINDSPIVVVSPDGTERQLGTGD------APSVAADG-RVAYAGVGG--- 496 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 ++ + A + + S P +S +G + +Y + R Sbjct: 497 -QIVTVRPDGTDARQLATSGDSSAEYPAWSPDGTQIAYFRNTGG---LYLMQADGTGARR 552 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS--QDKEASYFDPVW 354 + + + ++SPD +IVF D + + L ++ + ++ A +P W Sbjct: 553 VASVHGLET--AWSPDGREIVFR-DPD-SQTLKIVSMADGSVRALTGAPHDGAIPVEPSW 608 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD- 413 SP G I F G +AI DG+ L + PTWSP GR ++F R Sbjct: 609 SPDGKTIVFGSDDGGIYAIA---PDGTGLHQLAAAGS-WHPTWSPDGR-VVFVRDTSART 663 Query: 414 ---TGSKLYSIDLNGRNETLINTPAYASDPQW 442 T ++ S+ L+G + + + + QW Sbjct: 664 FFSTTGRVESMKLDGSDVRSVGSVTASGPVQW 695 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 83/209 (39%), Gaps = 27/209 (12%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL-TN 299 ++ D +++G AP +++G R + I +V +L T+ Sbjct: 463 IVVVSPDGTERQLGTGD----APSVAADG-RVAYA---GVGGQIVTVRPDGTDARQLATS 514 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 ++SPD +QI + + G LY+MQ++G+ +R++ + WSP G Sbjct: 515 GDSSAEYPAWSPDGTQIAYFRNTGG---LYLMQADGTGARRVASVHG---LETAWSPDGR 568 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTG 415 I F + + ++ R L + A P+WSP G++++F G Sbjct: 569 EIVF--RDPDSQTLKIVSMADGSVRALTGAPHDGAIPVEPSWSPDGKTIVFGSDDGG--- 623 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVG 444 +Y+I +G + + P W Sbjct: 624 --IYAIAPDGTGLHQLAAAG-SWHPTWSP 649 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 20/178 (11%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 KR +++ + +L S + D + Q+ Sbjct: 450 KRFAADSSINDSPIVVVSP--DGTERQLGTGDA----PSVAADGR----VAYAGVGGQIV 499 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++ +G+D ++++ ++S P WSP G IA+ + +G + +M+ DG+ R + Sbjct: 500 TVRPDGTDARQLATSGDSSAEYPAWSPDGTQIAYFRNTGG---LYLMQADGTGARRVASV 556 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS---DPQWVG 444 L+ WSP GR ++F + K+ S+ +G L P + +P W Sbjct: 557 HGLET-AWSPDGREIVF--RDPDSQTLKIVSM-ADGSVRALTGAPHDGAIPVEPSWSP 610 >gi|302824273|ref|XP_002993781.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii] gi|300138377|gb|EFJ05147.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii] Length = 722 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 96/267 (35%), Gaps = 43/267 (16%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P FSP+ + +A+ DE +Y+ K F + K L + Sbjct: 426 FPVFSPDGESIAFIPDLDEGG--IYVTRLNGSGMTKV---FDKPAFGLSWDKQRKGVLYT 480 Query: 276 VQKDEAMD-------IYSVDLQ-----SNATER---LT-NTLFINISASYSPDSSQIVFE 319 + + ++ + LT + N S SPD IVF Sbjct: 481 SYGPGFVPEDTIVHIVSILNADELIAGGGGAVKWKILTKSGTKNNAFPSPSPDGKWIVFR 540 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDP--VWSPQGDLIAFTKFS----GEKFAI 373 S R G + LY+M + ++ + + E ++ D WS G+ IAF+ G F + Sbjct: 541 SGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWIAFSSDRHNPGGGSFQL 600 Query: 374 GVMKKDGSQE-RLL--VEDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKL 418 ++ DGSQ R+L + P +SP RSL+F+ G ++ Sbjct: 601 YFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFTTDYAGVSADPIAVPAQFQPYGEI 660 Query: 419 YSIDLNGRNETLINTPAY-ASDPQWVG 444 + ++G + AY P W Sbjct: 661 FMARIDGSELVRLTHNAYEDGTPSWGP 687 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 128/411 (31%), Gaps = 102/411 (24%) Query: 130 LWD---VKDRKQIIGKKFFSSPASWRKIAHTISDDIY---------QSITGEKGDFNSRI 177 L+D V D + I S + A S DI + +T + Sbjct: 183 LYDRPSVADGRVIFVSTRKPREQSRQSWAAVYSMDIVTKKITRLTPEGVTDYSPSVSPSG 242 Query: 178 LFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQILF----EPRFSPNQQKVAYATYD 232 FV + G + +D D + + S +++ P +S + V + Sbjct: 243 KFVMVASDDGRGWGGEIEELDTDLYSFQAWDGSGRKLVVKNGGWPSWS-DDSTVFFHRRA 301 Query: 233 DEDILRVY---LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--V 287 ++ VY + +RI P S GK ++ ++ ++ + Sbjct: 302 EDGWWSVYKATFSKSFTAIREERITPPGVHAFTPAASRTGKWIAVATRRAGSLYRHVEVF 361 Query: 288 DLQSNATERLTNTLFINIS----------------------------------------- 306 DL S +L+ + Sbjct: 362 DLGSRKFHKLSELVAPEAHHYNPFVSPESDKIGYHRCRGKGVTPRLEHIKSPVPGISLVR 421 Query: 307 -----ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +SPD I F D + + +YV + NGS +++ + F W Q + Sbjct: 422 VDGDFPVFSPDGESIAFIPDLD-EGGIYVTRLNGSG---MTKVFDKPAFGLSWDKQRKGV 477 Query: 362 AFTKFSGE-------KFAIGVMKKD-----GSQE---RLLVEDS--NLQAPTWSPSGRSL 404 +T + + ++ D G ++L + N P+ SP G+ + Sbjct: 478 LYTSYGPGFVPEDTIVHIVSILNADELIAGGGGAVKWKILTKSGTKNNAFPSPSPDGKWI 537 Query: 405 IFSRKKDGDTGSKLYSID-LNGRNETLI---------NTPAYASDPQWVGF 445 +F + G LY +D ++G +L +++ D +W+ F Sbjct: 538 VFRSGRSGHKN--LYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWIAF 586 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 22/174 (12%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILA 262 + LT S + P SP+ + + + + L + + + +R+ Sbjct: 515 KILTKSGTKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTM 574 Query: 263 PRFSSNGKRALISVQK----DEAMDIYSVDLQSNATERLTNTL--FINISASYSPDSSQI 316 +S +G+ S + + +Y V + R+ N+ +SPDS + Sbjct: 575 ASWSHDGEWIAFSSDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSL 634 Query: 317 VFESDREG--------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 VF +D G ++++ + +GS+ R++ + P W P Sbjct: 635 VFTTDYAGVSADPIAVPAQFQPYGEIFMARIDGSELVRLTHNA-YEDGTPSWGP 687 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 100/283 (35%), Gaps = 20/283 (7%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNS---LCVMDRDGANIRYLTPSRDQILFEPRFSP 221 ++ + R++FVS + S + MD I LTP + P SP Sbjct: 182 ALYDRPSVADGRVIFVSTRKPREQSRQSWAAVYSMDIVTKKITRLTPEG-VTDYSPSVSP 240 Query: 222 NQQKVAYATYDDED-ILRVYLMDTRIDRAPKRIGNFRSMIL----APRFSSNGKRALISV 276 + + V A+ D + +DT + G+ R +++ P +S + Sbjct: 241 SGKFVMVASDDGRGWGGEIEELDTDLYSFQAWDGSGRKLVVKNGGWPSWSDDSTVFFHRR 300 Query: 277 QKDEAMDIYSVDLQSN----ATERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYV 330 +D +Y + ER+T + + S I + R G + V Sbjct: 301 AEDGWWSVYKATFSKSFTAIREERITPPGVHAFTPAASRTGKWIAVATRRAGSLYRHVEV 360 Query: 331 MQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 ++S+ EA +++P SP+ D I + + G+ + + + Sbjct: 361 FDLGSRKFHKLSELVAPEAHHYNPFVSPESDKIGYHRCRGKGVTPRLEHIKSPVPGISLV 420 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + P +SP G S+ F D +Y LNG T + Sbjct: 421 RVDGDFPVFSPDGESIAFIPDLDEGG---IYVTRLNGSGMTKV 460 >gi|116623521|ref|YP_825677.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226683|gb|ABJ85392.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 877 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 136/402 (33%), Gaps = 60/402 (14%) Query: 68 VVSKDLQRSDVFNLISQDSFKQKITNPDS--IPRFQDWNSLGAQVLVTGRVIKEGKDRLR 125 +++ QR + + ++IT + R+ W + G + ++ G + Sbjct: 414 IIAALDQRGGLLRVADAGGTPEQITKAPEGVLQRWPQWLA-GGEYVLFTS-STNGTNFDE 471 Query: 126 VEFRLWDVKDR--KQIIGKKFFSS--PASWRKIAHT---ISDDIYQSITGEKGDFNSRIL 178 E ++ VK R + ++ F+ P+ H + + +G + Sbjct: 472 AELQVVSVKTREIRTVLRGGFYGRYLPSGHLVYGHNGIIFAAPFDPARAQLRGTPVPVVE 531 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 V+ V SG + FS + + + R Sbjct: 532 DVAFHVSSGGGQFD--------------------------FSQSGLFLYLSGKPQNSNSR 565 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + +D+ + +G APR S +G+ +S+ + D++ DLQ + RLT Sbjct: 566 IAWVDSA--GKVENLGAAPGAYSAPRLSPDGRMLAVSI--GASPDLWIYDLQRESFSRLT 621 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 N +S D I++ S G ++ +++G+ Q + +P G Sbjct: 622 LNGHSNRIPVWSSDGRHIIYSSAYGGTYDVWWARADGAGQPQSLLHANTMTLAYSLAPDG 681 Query: 359 DLIAFTKFS-GEKFAIGVMKKD---------GSQERLLVEDSNLQ-APTWSPSGRSLIFS 407 +A+ + + G I ++ D G L + ++ P +SP GR + + Sbjct: 682 RWLAYQQQTVGADGDIWILPLDPADPEHPKPGKPVAYLQTPTTMEGVPAFSPDGRWIAYG 741 Query: 408 RKKDGDTGSKLYSIDLN------GRNETLINTPAYASDPQWV 443 + G ++Y + G + +P W Sbjct: 742 SGESG--VMEIYVRSFDPATGQAGVAGKFPVSSGGGWNPVWS 781 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 24/289 (8%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +LF S + + + L V+ IR + + P D Sbjct: 457 YVLFTSSTNGTNFDEAELQVVSVKTREIRTVLRGGFYGRYLPSGHLVYGHNGIIFAAPFD 516 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNAT 294 R L T + + S FS +G +S + ++ I VD Sbjct: 517 PARAQLRGTPVPVVEDVAFHVSSGGGQFDFSQSGLFLYLSGKPQNSNSRIAWVDSAGK-V 575 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 E L + SPD + L++ R++ + ++ PVW Sbjct: 576 ENLGAAPGAYSAPRLSPDGRMLAVS--IGASPDLWIYDLQRESFSRLTLNGHSNRI-PVW 632 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDG-SQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 S G I ++ G + + + DG Q + LL ++ A + +P GR L + ++ G Sbjct: 633 SSDGRHIIYSSAYGGTYDVWWARADGAGQPQSLLHANTMTLAYSLAPDGRWLAYQQQTVG 692 Query: 413 DTGSKLYSIDLN---------GRNETLINTP-------AYASDPQWVGF 445 G ++ + L+ G+ + TP A++ D +W+ + Sbjct: 693 ADG-DIWILPLDPADPEHPKPGKPVAYLQTPTTMEGVPAFSPDGRWIAY 740 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 16/210 (7%) Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + + L++ +D P + R + S++G R V+ + + L Sbjct: 295 WRATRAVERPLLNMSVDLGPDAVVGLRGTV---AVSADGSRIAYPVRSGTSESLAVRVLN 351 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 L T + +SPD + F ++R +L + G ++ + Sbjct: 352 QPKPTVLVGTEGM-TLPFFSPDGQWVGFFAER----KLKKISVQGGAA--VTLCDAPNGR 404 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSR 408 W G +IA G + V G+ E++ E + P W G ++F+ Sbjct: 405 GGSWGEDGTIIAALDQRGGL--LRVADAGGTPEQITKAPEGVLQRWPQWLAGGEYVLFTS 462 Query: 409 KKDGDT--GSKLYSIDLNGRNETLINTPAY 436 +G ++L + + R + + Sbjct: 463 STNGTNFDEAELQVVSVKTREIRTVLRGGF 492 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 88/323 (27%), Gaps = 74/323 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SRI + S S SL V + L + L P FSP+ Q V + + + Sbjct: 331 SRIAYPVRSGTS----ESLAVRVLNQPKPTVLVGTEGMTL--PFFSPDGQWVGF--FAER 382 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + ++ + + +G Q+ + V Sbjct: 383 KLKKISVQGGAAVTLCDAPNGRGG-----SWGEDGTIIAALDQRGG---LLRVADAGGTP 434 Query: 295 ERLTNTLF--INISASYSPDSSQIVFESDREGKE----QLYVMQSNGSDQKRISQDKEAS 348 E++T + + ++F S G +L V+ + + + + Sbjct: 435 EQITKAPEGVLQRWPQWLAGGEYVLFTSSTNGTNFDEAELQVVSVKTREIRTVLRGGFYG 494 Query: 349 YFDP----VWSPQG----------------------DLIAFTKFSGE------------- 369 + P V+ G + +AF SG Sbjct: 495 RYLPSGHLVYGHNGIIFAAPFDPARAQLRGTPVPVVEDVAFHVSSGGGQFDFSQSGLFLY 554 Query: 370 --------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 I + G E L AP SP GR L S L+ Sbjct: 555 LSGKPQNSNSRIAWVDSAGKVENLGAAPGAYSAPRLSPDGRMLAVSI----GASPDLWIY 610 Query: 422 DLNGRNETLINTPAYA-SDPQWV 443 DL + + + ++ P W Sbjct: 611 DLQRESFSRLTLNGHSNRIPVWS 633 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 46/143 (32%), Gaps = 13/143 (9%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT------ 244 + DGA + + +P+ + +AY ++++ Sbjct: 649 YDVWWARADGAGQPQSLLHANTMTLAYSLAPDGRWLAYQQQTVGADGDIWILPLDPADPE 708 Query: 245 --RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--VDLQSNA---TERL 297 + + + +M P FS +G+ + M+IY D + + Sbjct: 709 HPKPGKPVAYLQTPTTMEGVPAFSPDGRWIAYGSGESGVMEIYVRSFDPATGQAGVAGKF 768 Query: 298 TNTLFINISASYSPDSSQIVFES 320 + + +S ++ ++ + + Sbjct: 769 PVSSGGGWNPVWSRNAQELFYTA 791 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 6/97 (6%) Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 S G IA+ SG ++ V + + +LV + P +SP G+ + F Sbjct: 319 GLRGTVAVSADGSRIAYPVRSGTSESLAVRVLNQPKPTVLVGTEGMTLPFFSPDGQWVGF 378 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 ++ KL I + G + W Sbjct: 379 FAER------KLKKISVQGGAAVTLCDAPNGRGGSWG 409 >gi|253565676|ref|ZP_04843131.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945955|gb|EES86362.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 1077 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M + G + RI+ D P W+P G I + + F + Sbjct: 90 VYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVDKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 423 LNGRNETLINTPAYASDPQWVG 444 N E + N A P W+G Sbjct: 207 GNKTVENVTNNVAQDIFPMWIG 228 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 139/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + + + ++ DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVAQDIFPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ + K ++ V + ++++ + + I+FE N + Sbjct: 236 DRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVHGNTIVFE-----NGGYIYKMDAAAR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + + + + A S +G R +++ + +++++ ++ Sbjct: 291 KAEKVNITLASDNIYARTDLKEGANYVTAASLSPDGARMVVTSRG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD +QI + SD G+ +LY+ + G + +++ + D Sbjct: 347 TKNITRSPGAHDRDAQWSPDGTQIAYISDATGETELYLQNAAGGEPMQLTHKNDTYIRDF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I + + ++ + LL++D T+SP L ++R Sbjct: 407 KWSPDSKKIVYMDRKN---RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRM- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + +Y ++ + E + +P +++D +++ F Sbjct: 463 GKNEINVVYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIF 504 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 37/216 (17%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N ++ ++ D+ +V +R+ + + PRFS +GK + Q D Sbjct: 34 NGNEIVFSY--AGDLYKV----PASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGN 87 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y++ R+T + L + +++PD +IV+ + +G + Sbjct: 88 TEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGK 147 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVM 376 L+ + G + I + +SP G +A+ + G I V Sbjct: 148 LFTVDKEGGLSEVIPLPEGGF---CSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVY 204 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 + + + P W G + F +D Sbjct: 205 NPGNKTVENVTNNVAQDIFPMWI--GDEIFFLSDRD 238 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPASGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTM-PATGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 RI + ++ +G+R + + + +++VD + +E + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V + ++ + Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I Q + + +++ P+ G ++ Sbjct: 220 QDIF-PMW--IGDEIFFLSDRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVH--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAAARKAEKVN 296 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRV--EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA + + +G R+ V ++++ K + S A R Sbjct: 313 GANYVTAASLSPDGA-RMVVTSRGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D ++I ++S++ + L + + G LT D + + ++SP+ + Sbjct: 362 ---QWSPDG-TQIAYISDATG----ETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMD 283 K+ Y + RV L+D + + + + FS + + + + K+E Sbjct: 414 KIVYMDRKN----RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINV 469 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +Y ++ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIFSSARDFNP 512 >gi|226349776|ref|YP_002776890.1| hypothetical protein ROP_pROB01-05390 [Rhodococcus opacus B4] gi|226245691|dbj|BAH56038.1| hypothetical protein [Rhodococcus opacus B4] Length = 309 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 106/264 (40%), Gaps = 36/264 (13%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF------SPNQQKVAYATYDDEDILRVY 240 + V + DG+ +R +TP+ + + R+ SP+ ++AY + Sbjct: 49 DDGWGQVFVANVDGSGLRQVTPTVADDMSDGRWGNNAALSPDGAQLAYT----RGGRFIE 104 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 ++D + P FS +G S I ++ + + Sbjct: 105 VVDLESGD----VRTVHEDGYQPVFSPDGSSIAFSKSDG---SISIMNTDGSDLRVIAPA 157 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 ++ A++SPD S++VF +D + + + G + K + +D+ + DP +SP G Sbjct: 158 ESGSV-ATFSPDGSRVVFTAD----GYIVEVPTTGGESKVLLRDQFWN-SDPAYSPDGST 211 Query: 361 IAFTKFSGEKF--AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR--KKDGD--- 413 + F+ G I M G + L + + P ++P G ++++R + G+ Sbjct: 212 LVFSSNRGGNHGSEIYSMPAGGGEITRLTDTYAV-HPQFTPDGSRILYTRATTQSGELVV 270 Query: 414 -----TGSKLYSIDLNGRNETLIN 432 ++L S++ +G ++ + Sbjct: 271 DISTSNSAELASMNPDGSDQKRLT 294 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 22/231 (9%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------SSNGKRAL 273 SP ++DD +V++ + + + R+ S +G + Sbjct: 37 SPPAPTPVIVSFDDGWG-QVFVANVDGSGLRQVTPTVADDMSDGRWGNNAALSPDGAQLA 95 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + I VDL+S T +SPD S I F S +G + +M + Sbjct: 96 YTR---GGRFIEVVDLESGDVR--TVHE-DGYQPVFSPDGSSIAF-SKSDGS--ISIMNT 146 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 +GSD + I+ + S +SP G + FT + + + V G + LL + Sbjct: 147 DGSDLRVIAPAESGSVA--TFSPDGSRVVFTA---DGYIVEVPTTGGESKVLLRDQFWNS 201 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P +SP G +L+FS + G+ GS++YS+ G T + T YA PQ+ Sbjct: 202 DPAYSPDGSTLVFSSNRGGNHGSEIYSMPAGGGEITRL-TDTYAVHPQFTP 251 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 37/257 (14%) Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + R++ T++DD ++ + N+ + + + V+D + ++R Sbjct: 60 VDGSGLRQVTPTVADD----MSDGRWGNNAALSPDGAQLAYTRGGRFIEVVDLESGDVRT 115 Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + ++P FSP+ +A++ D + +M+T + I S +A F Sbjct: 116 VHEDG----YQPVFSPDGSSIAFSKSDG----SISIMNTD-GSDLRVIAPAESGSVA-TF 165 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G R + + I V ++ L F N +YSPD S +VF S+R G Sbjct: 166 SPDGSRVVFTADG----YIVEVPTTGGESKVLLRDQFWNSDPAYSPDGSTLVFSSNRGGN 221 Query: 326 --EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-------------TKFSGEK 370 ++Y M + G + R++ + P ++P G I + S Sbjct: 222 HGSEIYSMPAGGGEITRLT---DTYAVHPQFTPDGSRILYTRATTQSGELVVDISTSNSA 278 Query: 371 FAIGVMKKDGSQERLLV 387 + M DGS ++ L Sbjct: 279 -ELASMNPDGSDQKRLT 294 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 24/172 (13%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 S+ +M+ DG+++R + P+ + FSP+ +V + + Sbjct: 136 KSDGSISIMNTDGSDLRVIAPAESGSVA--TFSPDGSRVVFTADGY------IVEVPTTG 187 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFINI 305 K + + P +S +G + S + +IYS+ RLT+T + Sbjct: 188 GESKVLLRDQFWNSDPAYSPDGSTLVFSSNRGGNHGSEIYSMPAGGGEITRLTDTYA--V 245 Query: 306 SASYSPDSSQIVFESDREGKEQLYV------------MQSNGSDQKRISQDK 345 ++PD S+I++ +L V M +GSDQKR++ Sbjct: 246 HPQFTPDGSRILYTRATTQSGELVVDISTSNSAELASMNPDGSDQKRLTPRS 297 >gi|312886298|ref|ZP_07745911.1| WD40 domain protein beta Propeller [Mucilaginibacter paludis DSM 18603] gi|311301243|gb|EFQ78299.1| WD40 domain protein beta Propeller [Mucilaginibacter paludis DSM 18603] Length = 1067 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 24/248 (9%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FR 257 + ++ P SP+ + + + + + + +YL D + K++ + F Sbjct: 298 FHNSGEMNVAPAISPDGKYLTFLSEKNLFTIDLYLADAHTGKVIKKLTSKISNTHIDEFN 357 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINIS-ASYSPDSSQ 315 + A ++ + KR SV + VD+ + + + S S+SP+ Sbjct: 358 FIESAGAWAPDSKRFAFSVFSRGRNKLVIVDIATGKTLDEIAMGKAEQFSYVSWSPNGQD 417 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------ 369 IVF EG+ LY+ +++ DK S + P +S G I F Sbjct: 418 IVFSGMSEGESDLYMYNLGTKKLTQLTNDK-YSDYQPSFSHDGKKIVFASDRTTYDKSLS 476 Query: 370 ---KFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 F + VM + + +N P +S + + F +DG Y++ + Sbjct: 477 QTITFNLAVMDVATGLVKDIDVFNGANNLNPQFSSDDQQIYFLSNRDGFRNLYRYTL-AD 535 Query: 425 GRNETLIN 432 G+ E L + Sbjct: 536 GKVEQLTD 543 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 18/217 (8%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNG 269 + I ++P+ ++ A++ + V ++D + I ++ + +S NG Sbjct: 357 NFIESAGAWAPDSKRFAFSVFSRGRNKLV-IVDIATGKTLDEIAMGKAEQFSYVSWSPNG 415 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE--- 326 + + S + D+Y +L + +LTN + + S+S D +IVF SDR + Sbjct: 416 QDIVFSGMSEGESDLYMYNLGTKKLTQLTNDKYSDYQPSFSHDGKKIVFASDRTTYDKSL 475 Query: 327 ------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 L VM K I A+ +P +S I F + Sbjct: 476 SQTITFNLAVMDVATGLVKDIDVFNGANNLNPQFSSDDQQIYFLSNRDGFRNLYRYTLAD 535 Query: 381 SQERLLVE------DSNLQAPTWS-PSGRSLIFSRKK 410 + L + AP S + + +S + Sbjct: 536 GKVEQLTDLFTGISGITEYAPALSISNNNDIAYSYYR 572 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 102/270 (37%), Gaps = 31/270 (11%) Query: 122 DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS-RILFV 180 + ++ L D K I KI++T D+ + +S R F Sbjct: 324 NLFTIDLYLADAHTGKVIKKLT--------SKISNTHIDEFNFIESAGAWAPDSKRFAFS 375 Query: 181 SESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 S +N L ++D G + + + + +SPN Q + ++ + + + Sbjct: 376 VFSRG----RNKLVIVDIATGKTLDEIAMGKAEQFSYVSWSPNGQDIVFSGMSEGES-DL 430 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE---------AMDIYSVDLQ 290 Y+ + + + + N + P FS +GK+ + + + ++ +D+ Sbjct: 431 YMYNLGTKKLTQ-LTNDKYSDYQPSFSHDGKKIVFASDRTTYDKSLSQTITFNLAVMDVA 489 Query: 291 SNATERL-TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 + + + N++ +S D QI F S+R+G LY ++++ Sbjct: 490 TGLVKDIDVFNGANNLNPQFSSDDQQIYFLSNRDGFRNLYRYTLADGKVEQLTDLFTGIS 549 Query: 350 FDPVWSP-----QGDLIAFTKFSGEKFAIG 374 ++P + IA++ + +K+A+ Sbjct: 550 GITEYAPALSISNNNDIAYSYYRAQKYALY 579 >gi|189464174|ref|ZP_03012959.1| hypothetical protein BACINT_00511 [Bacteroides intestinalis DSM 17393] gi|189437964|gb|EDV06949.1| hypothetical protein BACINT_00511 [Bacteroides intestinalis DSM 17393] Length = 1082 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 63/342 (18%), Positives = 140/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R EFR W + + S I + ++ DI+ G+ F S Sbjct: 176 KRLAYNRTMREFRTWKYYKGGMADDVWIYDPAKKSVENITNNVAQDIFPMWIGDDIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V + ++++ + S + I+FE N + Sbjct: 236 DRDRTMNIFVYNTKTKQTSKVTNFTEYDVKFPSASGNTIVFE-----NGGYIYKMDAATR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + I N + A S +G+R +++ + +++++ Sbjct: 291 QPEKVNISLASDNIYARSAIKNGAKYLTAASASPDGERVVVTARG----EVFNLPSTKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T T +A +S D I + SD G+ +LY+ + + +++++ + Sbjct: 347 TKNITRTPGAHERNAQWSSDGKYIAYISDATGETELYLQDAVEGNPVQLTKNNDTYIRSF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I +T I ++ Q +L++D Q T+SP + L ++R Sbjct: 407 EWSPDSKKIVYTDRQN---RINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDA 463 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 D + + +Y D+ G+ E + +P +++D +++ F Sbjct: 464 DNEI-TVVYVYDIAGKKEYPVTDKWYNSSSPVFSTDGKYLIF 504 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V + +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYRVPVTGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y + + G + +R++ D P W+P G I + + F + Sbjct: 90 VYTIPATGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGFAGKLY 149 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 + ++G + L E ++SP G+ L ++R G ++ D Sbjct: 150 SVNQEGGMPEIIPLPEGGFC---SYSPDGKRLAYNRTMREFRTWKYYKGGMADDVWIYDP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 ++ E + N A P W+G Sbjct: 207 AKKSVENITNNVAQDIFPMWIG 228 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 13/220 (5%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-MIL 261 R + + L SP+ ++V + K I Sbjct: 306 ARSAIKNGAKYLTAASASPDGERVVVTARGE------VFNLPSTKGVTKNITRTPGAHER 359 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFES 320 ++SS+GK ++Y D +LT N S +SPDS +IV+ Sbjct: 360 NAQWSSDGKYIAYISDATGETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSKKIVYT- 418 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKD 379 DR+ ++ ++ + QD D +SP + +T+ + + + V Sbjct: 419 DRQ--NRINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEITVVYVYDIA 476 Query: 380 GSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 G +E + + N +P +S G+ LIFS +D + Sbjct: 477 GKKEYPVTDKWYNSSSPVFSTDGKYLIFSSARDFNPTYGW 516 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 86/246 (34%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N ++ ++ D+ RV + +R+ + + PRFS +GK + Q D Sbjct: 34 NGNEIVFSY--AGDLYRVPV----TGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGN 87 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y++ +RLT + L + +++PD QI++ + +G + Sbjct: 88 TEVYTIPATGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGFAGK 147 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVM 376 LY + G + I E + +SP G +A+ + G + + Sbjct: 148 LYSVNQEGGMPE-IIPLPEGGF--CSYSPDGKRLAYNRTMREFRTWKYYKGGMADDVWIY 204 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + P W G + F +D +Y+ ++ T Sbjct: 205 DPAKKSVENITNNVAQDIFPMWI--GDDIFFLSDRDRTMNIFVYNTKTKQTSKVTNFTEY 262 Query: 436 YASDPQ 441 P Sbjct: 263 DVKFPS 268 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 95/268 (35%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY + P+ Sbjct: 45 DLYRVPVTGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTI-PATGGEPQ 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 R+ + ++ +GK+ + + A +YSV+ + E + Sbjct: 102 RLTYTATNSRDDLGDRMGPNNIVMTWTPDGKQIIYRNRISDGFAGKLYSVNQEGGMPEII 161 Query: 298 TNTLFINISASYSPDSSQIVFESD----REGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD ++ + R K + +++ + I+ + Sbjct: 162 PLPEG--GFCSYSPDGKRLAYNRTMREFRTWKYYKGGMADDVWIYDPAKKSVENITNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I V Q + + +++ P+ S G ++ Sbjct: 220 QDIF-PMW--IGDDIFFLSDRDRTMNIFVYNTKTKQTSKVTNFTEYDVKFPSAS--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAATRQPEKVN 296 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 9/215 (4%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGII--KNSLCVMDRDGANIRYLTPSRDQILF 215 SD+IY + G S ++ + + + + +T + Sbjct: 300 ASDNIYARSAIKNGAKYLTAASASPDGERVVVTARGEVFNLPSTKGVTKNITRTPGAHER 359 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 ++S + + +AY + D +YL D + N + I + +S + K+ + + Sbjct: 360 NAQWSSDGKYIAYIS-DATGETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSKKIVYT 418 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGK-EQLYVMQS 333 D I +D+ S L ++SPDS + + D + + +YV Sbjct: 419 ---DRQNRINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEITVVYVYDI 475 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 G + ++ DK + PV+S G + F+ Sbjct: 476 AGKKEYPVT-DKWYNSSSPVFSTDGKYLIFSSARD 509 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA+ L +G+ R+ V R ++++ K + K +P + + A SD Y Sbjct: 313 GAKYLTAASASPDGE-RVVVTARGEVFNLPSTKGVT-KNITRTPGAHERNAQWSSDGKY- 369 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 I ++S++ + L + D N LT + D + +SP+ + Sbjct: 370 ------------IAYISDATG----ETELYLQDAVEGNPVQLTKNNDTYIRSFEWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 K+ Y + R+ L+D + + + FS + K + D + + Sbjct: 414 KIVYTDRQN----RINLLDVASRQVTMLLQDPMGEPQDVTFSPDSKWLTYTRDADNEITV 469 Query: 285 -YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 Y D+ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYDIAGKKEYPVTDKWYNSSSPVFSTDGKYLIFSSARDFNP 512 >gi|60681997|ref|YP_212141.1| putative exported tricorn protease [Bacteroides fragilis NCTC 9343] gi|60493431|emb|CAH08217.1| putative exported tricorn protease [Bacteroides fragilis NCTC 9343] Length = 1077 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M + G + RI+ D P W+P G I + + F + Sbjct: 90 VYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVDKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 423 LNGRNETLINTPAYASDPQWVG 444 N E + N A P W+G Sbjct: 207 GNKTVENVTNNVAQDIFPMWIG 228 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 139/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + + + ++ DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVAQDIFPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ + K ++ V + ++++ + + I+FE N + Sbjct: 236 DRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVHGNTIVFE-----NGGYIYKMDAAAR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + + + + A S +G R +++ + +++++ ++ Sbjct: 291 KAEKVNITLASDNIYARTDLKEGANYVTAASLSPDGARMVVTSRG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD +QI + SD G+ +LY+ + G + +++ + D Sbjct: 347 TKNITRSPGAHDRDAQWSPDGTQIAYISDATGETELYLQNAAGGEPMQLTHKNDTYIRDF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I + + ++ + LL++D T+SP L ++R Sbjct: 407 KWSPDSKKIVYMDRKN---RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRM- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + +Y ++ + E + +P +++D +++ F Sbjct: 463 GKNEINVVYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIF 504 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 37/216 (17%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N ++ ++ D+ +V +R+ + + PRFS +GK + Q D Sbjct: 34 NGNEIVFSY--AGDLYKV----PASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGN 87 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y++ R+T + L + +++PD +IV+ + +G + Sbjct: 88 TEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGK 147 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVM 376 L+ + G + I + +SP G +A+ + G I V Sbjct: 148 LFTVDKEGGLSEVIPLPEGGF---CSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVY 204 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 + + + P W G + F +D Sbjct: 205 NPGNKTVENVTNNVAQDIFPMWI--GDEIFFLSDRD 238 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPASGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTM-PATGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 RI + ++ +G+R + + + +++VD + +E + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V + ++ + Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I Q + + +++ P+ G ++ Sbjct: 220 QDIF-PMW--IGDEIFFLSDRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVH--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAAARKAEKVN 296 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRV--EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA + + +G R+ V ++++ K + S A R Sbjct: 313 GANYVTAASLSPDGA-RMVVTSRGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D ++I ++S++ + L + + G LT D + + ++SP+ + Sbjct: 362 ---QWSPDG-TQIAYISDATG----ETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMD 283 K+ Y + RV L+D + + + + FS + + + + K+E Sbjct: 414 KIVYMDRKN----RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINV 469 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +Y ++ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIFSSARDFNP 512 >gi|312199549|ref|YP_004019610.1| serine/threonine protein kinase [Frankia sp. EuI1c] gi|311230885|gb|ADP83740.1| serine/threonine protein kinase [Frankia sp. EuI1c] Length = 744 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 34/274 (12%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + + + Q L P SP+++ + Y + + + + + L+P Sbjct: 473 KTIFSDKTQNLQFPVISPDRKTIVYVDNSTGSTTLWAIASDGSGKPVQLLTTGQGANLSP 532 Query: 264 R------FSSNGKRALISVQKDE----AMDIYSVDLQSNATERL-TNTLFINISASYSPD 312 S +GK ++ D+ +Y + RL T + S+SPD Sbjct: 533 AADGRPSLSPDGKFLVLRSTTDQTGQPNPGLYISSIDGKTVRRLDTQPEASD--PSWSPD 590 Query: 313 SSQIVFESDR----EGKEQLYVMQSNGSDQKRISQ-------DKEASYFDPVWSPQGDLI 361 +I + S+ G + + G ++ DK +P WSP G + Sbjct: 591 GERIAYWSNTVAGGGGGFLVLISTIPGQAAVPFNKDEFISEGDKPNLDSEPTWSPDGKYL 650 Query: 362 AFTKF---SGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGR-SLIFSRKKDGDT-- 414 AF + + I ++ + + E S P+WS SG L+F+ +D Sbjct: 651 AFVRQIASNPNDQQIAIVNVNTKHVTAVTGEKSTQDGPSWSASGSDLLLFTANRDPSHPD 710 Query: 415 GSKLYSID---LNGRNETLINTPAYASDPQWVGF 445 +L+ D L+ + L + + P+W Sbjct: 711 DRQLFMTDQRNLDAADRQLTDGRGDFAFPRWSAL 744 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 28/168 (16%) Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSD--QKRISQDKEAS-----YFDPVWSPQGD 359 SPD IV+ + G L+ + S+GS + ++ + A+ P SP G Sbjct: 486 PVISPDRKTIVYVDNSTGSTTLWAIASDGSGKPVQLLTTGQGANLSPAADGRPSLSPDGK 545 Query: 360 LIAFTKFSGE----KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK-DGDT 414 + + + + + DG R L P+WSP G + + G Sbjct: 546 FLVLRSTTDQTGQPNPGLYISSIDGKTVRRLDTQPEASDPSWSPDGERIAYWSNTVAGGG 605 Query: 415 GSKLYSIDL----------------NGRNETLINTPAYASDPQWVGFM 446 G L I G L + P ++ D +++ F+ Sbjct: 606 GGFLVLISTIPGQAAVPFNKDEFISEGDKPNLDSEPTWSPDGKYLAFV 653 >gi|265764053|ref|ZP_06092621.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256661|gb|EEZ28007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1077 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M + G + RI+ D P W+P G I + + F + Sbjct: 90 VYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVDKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 423 LNGRNETLINTPAYASDPQWVG 444 N E + N A P W+G Sbjct: 207 GNKTVENVTNNVAQDIFPMWIG 228 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 138/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + + + ++ DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVAQDIFPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ + K ++ V + ++++ + + I+FE N + Sbjct: 236 DRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVHGNTIVFE-----NGGYIYKMDAVAR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + + + + A S +G R +++ + +++++ ++ Sbjct: 291 KAEKVNITLASDNIYARTDLKEGANYVTAASLSPDGVRMVVTSRG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD +QI + SD G+ +LY+ + G + + + + D Sbjct: 347 TKNITRSPGAHDRDAQWSPDGTQIAYISDATGETELYLQNAAGGEPMQFTHKNDTYIRDF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I + + ++ + LL++D T+SP L ++R Sbjct: 407 KWSPDSKKIVYMDRKN---RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRM- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + +Y ++ + E + +P +++D +++ F Sbjct: 463 GKNEINVVYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIF 504 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 37/216 (17%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N ++ ++ D+ +V +R+ + + PRFS +GK + Q D Sbjct: 34 NGNEIVFSY--AGDLYKV----PASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGN 87 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y++ R+T + L + +++PD +IV+ + +G + Sbjct: 88 TEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGK 147 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVM 376 L+ + G + I + +SP G +A+ + G I V Sbjct: 148 LFTVDKEGGLSEVIPLPEGGF---CSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVY 204 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 + + + P W G + F +D Sbjct: 205 NPGNKTVENVTNNVAQDIFPMWI--GDEIFFLSDRD 238 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPASGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTM-PATGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 RI + ++ +G+R + + + +++VD + +E + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V + ++ + Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I Q + + +++ P+ G ++ Sbjct: 220 QDIF-PMW--IGDEIFFLSDRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVH--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAVARKAEKVN 296 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 83/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRV--EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA + + +G R+ V ++++ K + S A R Sbjct: 313 GANYVTAASLSPDGV-RMVVTSRGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D ++I ++S++ + L + + G T D + + ++SP+ + Sbjct: 362 ---QWSPDG-TQIAYISDATG----ETELYLQNAAGGEPMQFTHKNDTYIRDFKWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMD 283 K+ Y + RV L+D + + + + FS + + + + K+E Sbjct: 414 KIVYMDRKN----RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINV 469 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +Y ++ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIFSSARDFNP 512 >gi|226228072|ref|YP_002762178.1| hypothetical protein GAU_2666 [Gemmatimonas aurantiaca T-27] gi|226091263|dbj|BAH39708.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 1174 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 25/206 (12%) Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 ++ S +G++ + + D +Y++ + RLT+ + + +SPD ++VF S Sbjct: 61 MSVDVSPDGQQLIFDLLGD----LYTLPIGGGKATRLTSGMAYDAQPRFSPDGKKVVFVS 116 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--AIGVMKK 378 DR G E +++M + D ++++ Y P + P G + ++ G + + Sbjct: 117 DRSGGENVWLMSLDQKDTTQLTRGNNNMYVSPEFDPDGKYVIVSRGGGLGGAAKLWMYHV 176 Query: 379 DGSQERLLV------EDSNLQAPTWSPSGRSLIFSRKKDG------DTGSKLYSIDLNGR 426 DG L + GR L ++ + +L D Sbjct: 177 DGGNGVPLSILPAPAATQKQLGAAFGAGGRYLWYATRTGDWQYNAIGPQYQLAVWDRETG 236 Query: 427 NETLINT-------PAYASDPQWVGF 445 + + T PA + D W+ + Sbjct: 237 RASQMTTRFGSGARPALSPDGTWLVY 262 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 80/215 (37%), Gaps = 22/215 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ Q++ + D+L R+ + + PRFS +GK+ + + Sbjct: 66 SPDGQQLIF------DLLGDLYTLPIGGGKATRLTSGMAYDAQPRFSPDGKKVVFVSDRS 119 Query: 280 EAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESDREGKE--QLYVMQSNGS 336 +++ + L T +LT +S + PD ++ +L++ +G Sbjct: 120 GGENVWLMSLDQKDTTQLTRGNNNMYVSPEFDPDGKYVIVSRGGGLGGAAKLWMYHVDGG 179 Query: 337 DQKRISQDKEASYF----DPVWSPQGDLIAFTKFSGE--------KFAIGVMKKDGSQER 384 + +S + + G + + +G+ ++ + V ++ + Sbjct: 180 NGVPLSILPAPAATQKQLGAAFGAGGRYLWYATRTGDWQYNAIGPQYQLAVWDRETGRAS 239 Query: 385 LLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 + A P SP G L+++ + + TG ++ Sbjct: 240 QMTTRFGSGARPALSPDGTWLVYATRFETKTGLRI 274 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 92/266 (34%), Gaps = 37/266 (13%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G S +PRFSP+ +KV + + D V+LM + +M Sbjct: 86 GGGKATRLTSGMAYDAQPRFSPDGKKVVFVS-DRSGGENVWLMSLDQKDTTQLTRGNNNM 144 Query: 260 ILAPRFSSNGKRALIS--VQKDEAMDIYSVDLQSNATERLTNTLFI-----NISASYSPD 312 ++P F +GK ++S A ++ + L+ + A++ Sbjct: 145 YVSPEFDPDGKYVIVSRGGGLGGAAKLWMYHVDGGNGVPLSILPAPAATQKQLGAAFGAG 204 Query: 313 SSQIVFESDREG---------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + + R G + QL V +++ + S P SP G + + Sbjct: 205 GRYLWYA-TRTGDWQYNAIGPQYQLAVWDRETGRASQMTT-RFGSGARPALSPDGTWLVY 262 Query: 364 TKFSGEKFAIGVMKKDGSQERLLV-----EDSNLQAP-------TWSPSGRSLIFSRKKD 411 K + + QE L +D +AP +++P ++++ S Sbjct: 263 ATRFETKTGLRIRNLQTQQEEWLAFPVQRDDMESRAPMDAYPGYSFTPDSKAIVVSY--- 319 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYA 437 G +L+ + ++ N T I A Sbjct: 320 ---GGELWRVPVDRTNPTKIPFEAEV 342 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 50/358 (13%), Positives = 101/358 (28%), Gaps = 95/358 (26%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 +++FVS+ ++ +M D + LT + + P F P+ + V + Sbjct: 111 KVVFVSDRSGG----ENVWLMSLDQKDTTQLTRGNNNMYVSPEFDPDGKYVIVSRGGGLG 166 Query: 236 ILRVYLMDTRIDRAPKRIGNFRS-----MILAPRFSSNGKRALISVQKDEA--------M 282 M + + L F + G+ + + + Sbjct: 167 GAAKLWMYHVDGGNGVPLSILPAPAATQKQLGAAFGAGGRYLWYATRTGDWQYNAIGPQY 226 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 + D ++ ++T + SPD + +V+ + E K L + ++ ++ Sbjct: 227 QLAVWDRETGRASQMTTRFGSGARPALSPDGTWLVYATRFETKTGLRIRNLQTQQEEWLA 286 Query: 343 QDKEAS----------YFDPVWSPQGDLIAFTKFSGEKFAIGV----------------- 375 + Y ++P I + GE + + V Sbjct: 287 FPVQRDDMESRAPMDAYPGYSFTPDSKAIV-VSYGGELWRVPVDRTNPTKIPFEAEVKLE 345 Query: 376 --------------------------MKKDGSQE------RLLVEDSNLQAPT------- 396 DG Q R+ + P Sbjct: 346 MGPEVKFAYKIDTATTFTSRQIRDVQPSPDGKQLAFVALDRVWTMNVADNKPARVSNATV 405 Query: 397 ------WSPSGRSLIFSRKKDGDTGSKLYSIDLNG----RNETLINTPAYASDPQWVG 444 WSP G+SL + +D G ++ D++G R TL +D W Sbjct: 406 GEFSPVWSPDGKSLAYVTWEDSRGG-QIMRADVDGTRGWRTRTLSTIGGLYTDLAWAP 462 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 28/193 (14%) Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 Y +DT ++I + + S +GK+ ++++++ N R++N Sbjct: 354 YKIDTATTFTSRQIRDVQP-------SPDGKQLAFVA----LDRVWTMNVADNKPARVSN 402 Query: 300 TLFINISASYSPDSSQIVFESDREGK-EQLYVMQSNGSD--QKRISQDKEASYFDPVWSP 356 S +SPD + + + + + Q+ +G+ + R Y D W+P Sbjct: 403 ATVGEFSPVWSPDGKSLAYVTWEDSRGGQIMRADVDGTRGWRTRTLSTIGGLYTDLAWAP 462 Query: 357 QGDLIAFTKFSGEKFA-------------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 G+ I T+ + + + + G L++ + P ++ Sbjct: 463 TGNRIVATRAAAREVQEAGAAFFGPAAADLVWIPATGGASTLIMPAGGINTPHFTKDSTR 522 Query: 404 LIFSRKKDGDTGS 416 + F+ G S Sbjct: 523 I-FAYSGGGGLQS 534 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 30/197 (15%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 SR +P SP+ +++A+ D RV+ M+ D P R+ N +P Sbjct: 360 TTFTSRQIRDVQP--SPDGKQLAFVALD-----RVWTMNV-ADNKPARVSNATVGEFSPV 411 Query: 265 FSSNGKRALISVQKD-EAMDIYSVDLQSNATER---LTNTLFINISASYSPDSSQIVFES 320 +S +GK +D I D+ R L+ + +++P ++IV Sbjct: 412 WSPDGKSLAYVTWEDSRGGQIMRADVDGTRGWRTRTLSTIGGLYTDLAWAPTGNRIVATR 471 Query: 321 DREGKEQ-------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + Q L + + G I + P ++ I F Sbjct: 472 AAAREVQEAGAAFFGPAAADLVWIPATGGASTLIMPAGGIN--TPHFTKDSTRI-FAYSG 528 Query: 368 GEKFAIGVMKKDGSQER 384 G + + DG+ + Sbjct: 529 GGG--LQSFRWDGTDLK 543 >gi|301163435|emb|CBW22986.1| putative exported tricorn protease [Bacteroides fragilis 638R] Length = 1077 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M + G + RI+ D P W+P G I + + F + Sbjct: 90 VYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVDKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 423 LNGRNETLINTPAYASDPQWVG 444 N E + N A P W+G Sbjct: 207 GNKTVENVTNNVAQDIFPMWIG 228 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 139/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + + + ++ DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVAQDIFPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ + K ++ V + ++++ + + I+FE N + Sbjct: 236 DRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVHGNTIVFE-----NGGYIYKMDAVAR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + + + + A S +G R +++ + +++++ ++ Sbjct: 291 KAEKVNITLASDNIYARTDLKEGANYVTAASLSPDGVRMVVTSRG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD +QI + SD G+ +LY+ + G + +++ + D Sbjct: 347 TKNITRSPGAHDRDAQWSPDGTQIAYISDATGETELYLQNAAGGEPMQLTHKNDTYIRDF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I + + ++ + LL++D T+SP L ++R Sbjct: 407 KWSPDSKKIVYMDRKN---RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRM- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + +Y ++ + E + +P +++D +++ F Sbjct: 463 GKNEINVVYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIF 504 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 13/256 (5%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D + S+ G F + V+ + + D R + Sbjct: 263 DVKFPSVHGNTIVFENGGYIYKMDAVARKAEKVNITLASDNIYARTDLKEGANYVTAASL 322 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++ + + V+ + + + ++S +G + Sbjct: 323 SPDGVRMVVTSRGE-----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGTQIAYISDAT 377 Query: 280 EAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 ++Y + +LT N +I +SPDS +IV+ + K ++ ++ Sbjct: 378 GETELYLQNAAGGEPMQLTHKNDTYIRDF-KWSPDSKKIVY---MDRKNRVNLLDVASGK 433 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-GVMKKDGSQERLLVEDS-NLQAP 395 + QD +SP + + +T+ + + V +E + + N +P Sbjct: 434 VSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINVVYVYNIAEKKEYPVTDKWYNSSSP 493 Query: 396 TWSPSGRSLIFSRKKD 411 +S G+ LIFS +D Sbjct: 494 VFSADGKYLIFSSARD 509 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 37/216 (17%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N ++ ++ D+ +V +R+ + + PRFS +GK + Q D Sbjct: 34 NGNEIVFSY--AGDLYKV----PASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGN 87 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y++ R+T + L + +++PD +IV+ + +G + Sbjct: 88 TEVYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGK 147 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVM 376 L+ + G + I + +SP G +A+ + G I V Sbjct: 148 LFTVDKEGGLSEVIPLPEGGF---CSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVY 204 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD 411 + + + P W G + F +D Sbjct: 205 NPGNKTVENVTNNVAQDIFPMWI--GDEIFFLSDRD 238 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPASGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTM-PATGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 RI + ++ +G+R + + + +++VD + +E + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V + ++ + Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I Q + + +++ P+ G ++ Sbjct: 220 QDIF-PMW--IGDEIFFLSDRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVH--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAVARKAEKVN 296 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRV--EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA + + +G R+ V ++++ K + S A R Sbjct: 313 GANYVTAASLSPDGV-RMVVTSRGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D ++I ++S++ + L + + G LT D + + ++SP+ + Sbjct: 362 ---QWSPDG-TQIAYISDATG----ETELYLQNAAGGEPMQLTHKNDTYIRDFKWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMD 283 K+ Y + RV L+D + + + + FS + + + + K+E Sbjct: 414 KIVYMDRKN----RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINV 469 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +Y ++ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIFSSARDFNP 512 >gi|53713728|ref|YP_099720.1| putative protease [Bacteroides fragilis YCH46] gi|52216593|dbj|BAD49186.1| putative protease [Bacteroides fragilis YCH46] Length = 1077 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V +RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPASGGEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M + G + RI+ D P W+P G I + + F + Sbjct: 90 VYTMPATGGEPLRITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVDKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNP 206 Query: 423 LNGRNETLINTPAYASDPQWVG 444 N E + N A P W+G Sbjct: 207 GNKTVENVTNNVAQDIFPMWIG 228 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 138/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + + + ++ DI+ G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVAQDIFPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ + K ++ V + ++++ + + I+FE N + Sbjct: 236 DRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVHGNTIVFE-----NGGYIYKMDAAAR 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + + + + + + A S +G R +++ + +++++ ++ Sbjct: 291 KAEKVNITLASDNIYARTDLKEGANYVTAASLSPDGARMVVTSRG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD +QI + SD G+ +LY+ + G + + + + D Sbjct: 347 TKNITRSPGAHDRDAQWSPDGTQIAYISDATGETELYLQNAAGGEPMQFTHKNDTYIRDF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 WSP I + + ++ + LL++D T+SP L ++R Sbjct: 407 KWSPDSKKIVYMDRKN---RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRM- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + + +Y ++ + E + +P +++D +++ F Sbjct: 463 GKNEINVVYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIF 504 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 86/250 (34%), Gaps = 39/250 (15%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L + GA + ++L P N ++ ++ D+ +V Sbjct: 2 NKKLILSIFVLAGAPVLLSAAGEARLLRFPA--TNGNEIVFSY--AGDLYKV----PASG 53 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-------NT 300 +R+ + + PRFS +GK + Q D ++Y++ R+T + Sbjct: 54 GEAQRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTEVYTMPATGGEPLRITYTATNSRDD 113 Query: 301 LFINISA-----SYSPDSSQIVFESD-REG-KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 L + +++PD +IV+ + +G +L+ + G + I + Sbjct: 114 LGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEVIPLPEGGF---CS 170 Query: 354 WSPQGDLIAFTKF-----------SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSG 401 +SP G +A+ + G I V + + + P W G Sbjct: 171 YSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVAQDIFPMWI--G 228 Query: 402 RSLIFSRKKD 411 + F +D Sbjct: 229 DEIFFLSDRD 238 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 43/268 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPASGGEAQRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTM-PATGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 RI + ++ +G+R + + + +++VD + +E + Sbjct: 102 RITYTATNSRDDLGDRMGPNNIVMTWTPDGQRIVYRNRISDGFSGKLFTVDKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + ++V + ++ + Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWVYNPGNKTVENVTNNVA 219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 F P+W GD I F I Q + + +++ P+ G ++ Sbjct: 220 QDIF-PMW--IGDEIFFLSDRDRIMNIFAYNTKTKQTVKVTNFTEYDVKFPSVH--GNTI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +F + G +Y +D R +N Sbjct: 275 VF------ENGGYIYKMDAAARKAEKVN 296 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 83/223 (37%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRV--EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA + + +G R+ V ++++ K + S A R Sbjct: 313 GANYVTAASLSPDGA-RMVVTSRGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D ++I ++S++ + L + + G T D + + ++SP+ + Sbjct: 362 ---QWSPDG-TQIAYISDATG----ETELYLQNAAGGEPMQFTHKNDTYIRDFKWSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMD 283 K+ Y + RV L+D + + + + FS + + + + K+E Sbjct: 414 KIVYMDRKN----RVNLLDVASGKVSLLLQDPVGVPGGVTFSPDSEWLTYTRMGKNEINV 469 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +Y ++ +T+ + + S +S D ++F S R+ Sbjct: 470 VYVYNIAEKKEYPVTDKWYNSSSPVFSADGKYLIFSSARDFNP 512 >gi|289662098|ref|ZP_06483679.1| hypothetical protein XcampvN_03108 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 784 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 11/231 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF--RSM 259 + + P SP+ VAYA+ + L+ T + P+ + S Sbjct: 221 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPAPGSS 280 Query: 260 ILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q +D + A R +S S+SPD + Sbjct: 281 DRLPAWSPDGREIAFSRQARDGVCRVMIAAATGPAAAREVARCDAADMLSFSWSPDGRAL 340 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G +L + + + +AS FD P +SP G I F + Sbjct: 341 VFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFVRNPQLGDL 400 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G+ ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 401 WRIPAQGGAAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 449 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 50/265 (18%) Query: 218 RFSPNQQKVAYATYDDEDI---LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 +SP+ + + + + LR ++T + APR+S +G + Sbjct: 332 SWSPDGRALVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVF 391 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS- 333 V+ + D++ + Q A ERLT+ S+ PD S ++F + + +LY + Sbjct: 392 -VRNPQLGDLWRIPAQGGAAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEARLYRLDLI 450 Query: 334 -----------------------------------------NGSDQKRISQDKEASYFDP 352 NG +R P Sbjct: 451 DSSLHDLGVDDAQAPDVAHGHLVFVQRKPQFGMYQVIHDSMNGGYIRRRLFPSSGRDDQP 510 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRK 409 + +P G + F + + S L+E + QA WS + ++ Sbjct: 511 MIAPDGHQLIFASNRSGTYGLWWGDVSKSSSVRLIEGLRPDSRQAADWSADSQRVL-VSG 569 Query: 410 KDGDTGSKLYSIDLNGRNETLINTP 434 D + + L+ + + + P Sbjct: 570 SDANGHAALFEVTPSTGKVVRLAVP 594 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD + + + S DR G L N + + Sbjct: 217 GSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPA 276 Query: 345 KEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPS 400 +S P WSP G IAF++ + + G V + +++ + +WSP Sbjct: 277 PGSSDRLPAWSPDGREIAFSRQARDGVCRVMIAAATGPAAAREVARCDAADMLSFSWSPD 336 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT---------PAYASDPQWVGFM 446 GR+L+F ++L +DL G+ +TL + P Y+ D W+ F+ Sbjct: 337 GRALVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFV 392 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 50/256 (19%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 ++F S + G + ++ + + PR+SP+ + + D Sbjct: 340 LVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFVRNPQLGD 399 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL------ 289 + R+ +R + R + +G + + D +Y +DL Sbjct: 400 LWRIPAQGGAAERLTHDNADIRGW----SWLPDGSGLIFGRRVDSEARLYRLDLIDSSLH 455 Query: 290 -------------------------------------QSNATERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 456 DLGVDDAQAPDVAHGHLVFVQRKPQFGMYQVIHDSMNGGYIRRRLFPSSGRDDQPMIAPD 515 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFT-KFSGEK 370 Q++F S+R G L+ + S R+ + + S WS + + + Sbjct: 516 GHQLIFASNRSGTYGLWWGDVSKSSSVRLIEGLRPDSRQAADWSADSQRVLVSGSDANGH 575 Query: 371 FAIGVMKKDGSQERLL 386 A+ + + L Sbjct: 576 AALFEVTPSTGKVVRL 591 >gi|170725571|ref|YP_001759597.1| winged helix family two component response transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810918|gb|ACA85502.1| putative two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 714 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 132/384 (34%), Gaps = 75/384 (19%) Query: 111 LVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 LV G K R L D+ + + + + +R + H + +Y Sbjct: 200 LVYGSRSKNK----RTSLYLKDLLKPTETPKRLTSTKTSEYRAVWHPDAGALY------- 248 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 + SE K SL V++ D +N + SP+ +AY Sbjct: 249 --------YPSEQ----KGKCSLTVLNLD-SNEATKLGACYSDTAAIDISPDGSSLAYIW 295 Query: 231 YD-DEDILRVYLMDTRI-DRAPKRIG---NFRSMILAPRFSSNGKRALISVQKDE-AMDI 284 + + +Y ++ + D P R+ N S FS +G+ I+ + + DI Sbjct: 296 NEGNGHHSGIYQLNLKDKDAEPVRLSCAENCGSRDRDMTFSPDGRWLAIARRFGNISEDI 355 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + D+++ RLT L S+ D+ +++F ++ G Y++ + + + + Sbjct: 356 FIRDIETGKETRLTFGLEDIRGLSWHQDNERVIFSTENSGVRNGYIVGIDDKEIHSLEVE 415 Query: 345 K-------------------------------------------EASYFDPVWSPQGDLI 361 E SY +P +S I Sbjct: 416 GMSYPRSIPNSNELVYSNYMRDYQIASFALEQSIPTATFPLLQVEYSYRNPDYSAAAKRI 475 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + I + DG R + + P+WS G + F D + G+K++ Sbjct: 476 VYVSNETGFNEIWSSELDGGARRQHTDLKRRVAYPSWSHDGTKVAFLAPDDKNEGNKIHV 535 Query: 421 IDLNGRNETLINTPA-YASDPQWV 443 +D+N N +++ TP + P W Sbjct: 536 LDINTSNISILATPYLDHNRPSWG 559 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 17/233 (7%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT-RIDRAPKRIGNFRSMIL 261 R S P SP+ + + Y + +YL D + PKR+ + ++ Sbjct: 177 ERQQLTSAAGAELYPAVSPDGRWLVYGSRSKNKRTSLYLKDLLKPTETPKRLTSTKTSEY 236 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL----TNTLFINISASYSPDSSQIV 317 + + ++ + ++L SN +L ++T I+I SPD S + Sbjct: 237 RAVWHPDAGALYYPSEQKGKCSLTVLNLDSNEATKLGACYSDTAAIDI----SPDGSSLA 292 Query: 318 FESDREGKEQ--LYVMQSNGSDQKRI----SQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + + +Y + D + + +++ + D +SP G +A + G Sbjct: 293 YIWNEGNGHHSGIYQLNLKDKDAEPVRLSCAENCGSRDRDMTFSPDGRWLAIARRFGNIS 352 Query: 372 A-IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + + +E L +++ +W +IFS + G + ID Sbjct: 353 EDIFIRDIETGKETRLTFGLEDIRGLSWHQDNERVIFSTENSGVRNGYIVGID 405 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 17/189 (8%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYV 330 + + S+ ++LT+ + + SPD +V+ S + + LY+ Sbjct: 156 IVFCLFSVFHFYQDSIRYSPTERQQLTSAAGAELYPAVSPDGRWLVYGSRSKNKRTSLYL 215 Query: 331 MQS--NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 KR++ K + Y VW P + + K ++ V+ D ++ L Sbjct: 216 KDLLKPTETPKRLTSTKTSEYRA-VWHPDAGALYYPSEQKGKCSLTVLNLDSNEATKLGA 274 Query: 389 DSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP------------A 435 + A SP G SL + + S +Y ++L ++ + Sbjct: 275 CYSDTAAIDISPDGSSLAYIWNEGNGHHSGIYQLNLKDKDAEPVRLSCAENCGSRDRDMT 334 Query: 436 YASDPQWVG 444 ++ D +W+ Sbjct: 335 FSPDGRWLA 343 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 25/216 (11%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y + RI++VS N + + DG R + + P +S + Sbjct: 461 YSYRNPDYSAAAKRIVYVSNETG----FNEIWSSELDGG-ARRQHTDLKRRVAYPSWSHD 515 Query: 223 QQKVAYATYDDED-ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG--KRALISVQKD 279 KVA+ DD++ +++++D + P + G +++ D Sbjct: 516 GTKVAFLAPDDKNEGNKIHVLDINTSNISILATPYLDHNR-PSW---GWKDEMVLAKTDD 571 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-SDREGKEQLYVMQSNGSDQ 338 + Y L + + + IN+ D+ ++VF R+G L+++ S+ Sbjct: 572 GITEFY---LDNRLPKVI---SSINMRLGKMIDADKLVFTQYSRKG---LWMLSL--SEP 620 Query: 339 KRISQDKEASYFDPVWSP-QGDLIAFTKFSGEKFAI 373 + +SQ E+ YFD ++ D + + SG ++ + Sbjct: 621 EAVSQIIESKYFDEGYNWVATDKGVYFRESGSRYQL 656 >gi|262196214|ref|YP_003267423.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079561|gb|ACY15530.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1267 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 114/268 (42%), Gaps = 27/268 (10%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S ++ + DG+ + D + + RFSP+ + + A+ D V L Sbjct: 949 SSSEDRTVRIWHADGSGQPRILSGHDAAVMDVRFSPDGRYIVSASGDA----SVRLWKAV 1004 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTNTLFIN 304 D P + ++ + FS +G+R ++S +D+ + ++ D+ S + L Sbjct: 1005 RDAEPLVLRGHEHVVTSADFSPDGRR-VVSTSEDQTVRVW--DVASRSEPLVLRGHEESV 1061 Query: 305 ISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SA++SPD ++IV S DR + V ++GS + + + + V+SP G IA Sbjct: 1062 MSAAFSPDGTRIVSASCDRT----VRVWNADGSGEPLVLYGHGSRVWSAVFSPDGRRIAS 1117 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + V DGS L++ +SP G ++ + K D +++ Sbjct: 1118 GSWDRT---VRVWNADGSGTALILSGHEDWVSEAEFSPDGAYIVSASK---DRTVRVWRA 1171 Query: 422 DLNGRNETL------INTPAYASDPQWV 443 D +G L +N ++ + +WV Sbjct: 1172 DGSGGAVVLGGHSLWVNGAHFSPNGEWV 1199 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 111/272 (40%), Gaps = 21/272 (7%) Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSE--SVVSGIIKNSLCVMDRDGANIRYLTPSR 210 + H + D+ ++ + S + F + +VSG ++ ++ DG Sbjct: 746 EAKHLLHADVASAVWTPHDNVVSTVAFSPDGTRLVSGSWDGTVRMLRTDGDGTSVTVGDH 805 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + + SP+ +VA A+ D V + D P + ++ + FS +G Sbjct: 806 GERVKSVALSPDGMRVASASTD----WSVRIWRVNGDAPPVVLRGHDGVVRSAVFSPDGS 861 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSPDSSQIVFESDREGKEQLY 329 + + S D + ++ + + + + ++A +SPD +IV SD + +++ Sbjct: 862 KIV-SASDDRTVRVW--NADGSGEPLVFHGHSDVVTAVDFSPDGRRIV-SSDWDRTVRVW 917 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLV- 387 ++GS + + A+ +SP G IA + E + + DG Q R+L Sbjct: 918 --NADGSGTPMVLRGHTAAVTSVHFSPDGRFIASSS---EDRTVRIWHADGSGQPRILSG 972 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 D+ + +SP GR ++ GD +L+ Sbjct: 973 HDAAVMDVRFSPDGRYIV---SASGDASVRLW 1001 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 97/250 (38%), Gaps = 15/250 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 V S S+ + +G + D ++ FSP+ K+ A+ D V + Sbjct: 819 MRVASASTDWSVRIWRVNGDAPPVVLRGHDGVVRSAVFSPDGSKIVSASDDR----TVRV 874 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P ++ A FS +G+R + S D + +++ D S L Sbjct: 875 WNADGSGEPLVFHGHSDVVTAVDFSPDGRRIV-SSDWDRTVRVWNAD-GSGTPMVLRGHT 932 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S +SPD I S+ + + ++GS Q RI +A+ D +SP G I Sbjct: 933 AAVTSVHFSPDGRFIASSSE---DRTVRIWHADGSGQPRILSGHDAAVMDVRFSPDGRYI 989 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + +D L + + + +SP GR ++ + + D +++ Sbjct: 990 V-SASGDASVRLWKAVRDAEPLVLRGHEHVVTSADFSPDGRRVVSTSE---DQTVRVW-- 1043 Query: 422 DLNGRNETLI 431 D+ R+E L+ Sbjct: 1044 DVASRSEPLV 1053 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 12/220 (5%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 SG L RD + + + ++ FSP+ ++V + D V + D Sbjct: 993 SGDASVRLWKAVRDAEPL--VLRGHEHVVTSADFSPDGRRVVSTSEDQ----TVRVWDVA 1046 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 P + +++ FS +G R + S D + +++ D S L Sbjct: 1047 SRSEPLVLRGHEESVMSAAFSPDGTRIV-SASCDRTVRVWNAD-GSGEPLVLYGHGSRVW 1104 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 SA +SPD +I S + V ++GS I E + +SP G I + Sbjct: 1105 SAVFSPDGRRIASGS---WDRTVRVWNADGSGTALILSGHEDWVSEAEFSPDGAYIV-SA 1160 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + G L + +SP+G ++ Sbjct: 1161 SKDRTVRVWRADGSGGAVVLGGHSLWVNGAHFSPNGEWVV 1200 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 18/218 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 VVS ++ V D + + ++ + FSP+ ++ A+ D V + Sbjct: 1029 RRVVSTSEDQTVRVWDVASRSEPLVLRGHEESVMSAAFSPDGTRIVSASCDR----TVRV 1084 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + P + S + + FS +G+R S D + +++ D A L+ Sbjct: 1085 WNADGSGEPLVLYGHGSRVWSAVFSPDGRRIA-SGSWDRTVRVWNADGSGTALI-LSGHE 1142 Query: 302 FINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 A +SPD + IV S DR + V +++GS + +SP G+ Sbjct: 1143 DWVSEAEFSPDGAYIVSASKDRT----VRVWRADGSGGAVVLGGHSLWVNGAHFSPNGEW 1198 Query: 361 IAFTKFSGEKFAIG----VMKKDGSQERLLVEDSNLQA 394 + + + V + D RL S + Sbjct: 1199 VV-SPSDDRTVRVWRDLSVPRLD--DPRLWTATSYCMS 1233 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 79/246 (32%), Gaps = 45/246 (18%) Query: 91 ITNPDSIPRFQDWNSL---------GAQVLVTGRVIKEGKDRLRVE------FRLWDVKD 135 I + + W ++ G + +VT R V R+WDV Sbjct: 989 IVSASGDASVRLWKAVRDAEPLVLRGHEHVVT-SADFSPDGRRVVSTSEDQTVRVWDVAS 1047 Query: 136 RKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCV 195 R + + + H S + + G +VS ++ V Sbjct: 1048 RSEPLVLR-----------GHEES--VMSAAFSPDG----------TRIVSASCDRTVRV 1084 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + DG+ + ++ FSP+ +++A ++D V + + + Sbjct: 1085 WNADGSGEPLVLYGHGSRVWSAVFSPDGRRIASGSWDR----TVRVWNADGSGTALILSG 1140 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + FS +G + S KD + ++ D A L A +SP+ Sbjct: 1141 HEDWVSEAEFSPDGAYIV-SASKDRTVRVWRADGSGGAVV-LGGHSLWVNGAHFSPNGEW 1198 Query: 316 IVFESD 321 +V SD Sbjct: 1199 VVSPSD 1204 >gi|294777420|ref|ZP_06742871.1| WD40-like protein [Bacteroides vulgatus PC510] gi|294448488|gb|EFG17037.1| WD40-like protein [Bacteroides vulgatus PC510] Length = 1084 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 119/334 (35%), Gaps = 41/334 (12%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 L+D ++ K + R ++ G + F S S Sbjct: 200 LYDSENGKH---TNLTAHAGEDRNPVFAPDGQTVYFLSERDGGTFNVYSFPISSPQSLKT 256 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 V +R+L+ + L ++ + + Y + +V + R D+ Sbjct: 257 -----VTHFKTHPVRFLSMGSNGTLC---YTYDGE--IYTQKQGDKPQKVKIDIIRDDQN 306 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 NF + + S +GK+ V+ +++ N T+++T+T ++ Sbjct: 307 TIADLNFSNGATSATVSPDGKQVAFIVRG----EVFVTSADYNTTKQITHTPAREAGLTF 362 Query: 310 SPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD+ + + S+R G +LY+ + +++ + + P +SP G Sbjct: 363 SPDNRILAYASERNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSPDG 422 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKK 410 +AF + + V+ + + R + + S + +WSP G+ L F + Sbjct: 423 KELAFIEDRN---RLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNR 479 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWV 443 D S + + G + Y + P+WV Sbjct: 480 H-DPYSDIGMVSAQGGKIINLTNSGYTSGSPRWV 512 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 28/201 (13%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + D IY V +LT S +SPDS QI F SDR G Sbjct: 31 SPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECSPIWSPDSKQIAFASDRNGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----------IG 374 L+VM ++G +R++ AS ++ G+ I F+ + + Sbjct: 87 FDLFVMSADGGAARRLTT-HSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELY 145 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSIDL- 423 + G + ++ + + SG++ ++ +K ++ D Sbjct: 146 KVPVTGGRTEQVLGTP-AEMVCFDKSGKTFLYQDRKGFEDEWRKHHTSSITRDVWLYDSE 204 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG++ L +P + Sbjct: 205 NGKHTNLTAHAGEDRNPVFAP 225 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S +P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PSNGGTATQLTTQASYECSPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + D++ + A RLT I ++++ D + I+F + + Sbjct: 84 NGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + G +++ A S G + S + + Sbjct: 144 LYKVPVTGGRTEQVL-GTPAEMVCFDKS--GKTFLYQDRKGFEDEWRKHHTSSITRDVWL 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G+++ F ++DG T +YS ++ Sbjct: 201 YDSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERDGGT-FNVYSFPIS 249 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ + + + K+I + + FS + + + + Sbjct: 321 TVSPDGKQVAFIVRGE------VFVTSADYNTTKQITHTPAREAGLTFSPDNRILAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++Y + N I +SPD ++ F DR Sbjct: 375 RNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRIS----QDKEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGMVSA 491 Query: 379 DGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L +P W G +++F ++ G Sbjct: 492 QGGKIINLTNSGYTSGSPRWVLDGNAILFITERYG 526 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 32/254 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT P +SP+ +++A+A+ + + + + Sbjct: 41 YKGDIYKVPSNGGTATQLTTQAS-YECSPIWSPDSKQIAFASDRNGNFDLFVM--SADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 A +R+ + + F+++G L S + ++Y V + TE++ Sbjct: 98 AARRLTTHSASEIPSTFTTDGNYILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ S ++ Sbjct: 158 LGTPAEMV--CFDKSGKTFLYQ-DRKGFEDEWRKHHTSSITRDVWLYDSENGKHTNLT-A 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 +PV++P G + F ++ G F + Q V + G + Sbjct: 214 HAGEDRNPVFAPDGQTVYFLSERDGGTFNVYSFPISSPQSLKTVTHFKTHPVRFLSMGSN 273 Query: 404 LIFSRKKDGDTGSK 417 DG+ ++ Sbjct: 274 GTLCYTYDGEIYTQ 287 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 SP G IAF I + +G L ++ + +P WSP + + F+ ++G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPSNGGTATQLTTQASYECSPIWSPDSKQIAFASDRNG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + L+ + +G + T + + P Sbjct: 86 NF--DLFVMSADGGAARRLTTHSASEIPS 112 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 124/357 (34%), Gaps = 55/357 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 V +GK V ++ V K+ +PA R+ T S D I + Sbjct: 320 ATVSPDGKQVAFIVRGEVF-VTSADYNTTKQITHTPA--REAGLTFSPDNRILAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + + L PS P+FSP+ +++A+ Sbjct: 377 GNWELYMAKIARKEEANFPNATAI-------EEEVLLPSDKTERTYPQFSPDGKELAFI- 428 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAM 282 ED R+ +++ + +++ + +S +GK I + D Sbjct: 429 ---EDRNRLMVLNLET-KKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRHDPYS 484 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVM 331 DI V Q LTN+ + + S + D + I+F ++R G L M Sbjct: 485 DIGMVSAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVMLVFM 544 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----------------EKFAIGV 375 + D+ R+S++ + + A + + + Sbjct: 545 NQDAYDKFRLSKEDYELQKELEKEQKNTTEAKKNDKKKGDNKEKSEEKKEEKVKDIVVEL 604 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + RL S+L + + G +L + +G G L+ ++L ++ L++ Sbjct: 605 NNIEDRIVRLTPNSSDLGSAIITKDGETLYYLSAFEG--GYDLWKMNLRKKDTKLLH 659 >gi|289668062|ref|ZP_06489137.1| hypothetical protein XcampmN_06068 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 784 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 11/231 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF--RSM 259 + + P SP+ VAYA+ + L+ T + P+ + S Sbjct: 221 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPAPGSS 280 Query: 260 ILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q +D + A R +S S+SPD + Sbjct: 281 DRLPAWSPDGREIAFSRQARDGVCRVMIAAATGPAAAREVARCDGADMLSFSWSPDGRAL 340 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 VF S G +L + + + +AS FD P +SP G I F + Sbjct: 341 VFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFVRNPQLGDL 400 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G+ ERL ++++++ +W P G LIF R+ D + ++LY +DL Sbjct: 401 WRIPAQGGAAERLTHDNADIRGWSWLPDGSGLIFGRRVDSE--ARLYRLDL 449 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 50/265 (18%) Query: 218 RFSPNQQKVAYATYDDEDI---LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 +SP+ + + + + LR ++T + APR+S +G + Sbjct: 332 SWSPDGRALVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVF 391 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS- 333 V+ + D++ + Q A ERLT+ S+ PD S ++F + + +LY + Sbjct: 392 -VRNPQLGDLWRIPAQGGAAERLTHDNADIRGWSWLPDGSGLIFGRRVDSEARLYRLDLI 450 Query: 334 -----------------------------------------NGSDQKRISQDKEASYFDP 352 NG +R P Sbjct: 451 DSSLHDLGVDDAQAPDVAHGHLVFVQRKPQFGMYQVIHDSMNGGYIRRRLFPSSGRDDQP 510 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRK 409 + +P G + F + + S L+E + QA WS + ++ Sbjct: 511 MIAPDGHQLIFASNRSGTYGLWWGDVSKSSSVRLIEGLRPDSRQAADWSADSQRVL-VSG 569 Query: 410 KDGDTGSKLYSIDLNGRNETLINTP 434 D + + L+ + + + P Sbjct: 570 SDANGHAALFEVTPSTGKVVRLAVP 594 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 21/176 (11%) Query: 292 NATER----LTNTLFINISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQD 344 + +R +T +++ S SPD + + + S DR G L N + + Sbjct: 217 GSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRAGTSILVKTTDNAYPRVLETPA 276 Query: 345 KEASYFDPVWSPQGDLIAFTKF-SGEKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPS 400 +S P WSP G IAF++ + + G V + +++ + +WSP Sbjct: 277 PGSSDRLPAWSPDGREIAFSRQARDGVCRVMIAAATGPAAAREVARCDGADMLSFSWSPD 336 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT---------PAYASDPQWVGFM 446 GR+L+F ++L +DL G+ +TL + P Y+ D W+ F+ Sbjct: 337 GRALVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFV 392 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 50/256 (19%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 ++F S + G + ++ + + PR+SP+ + + D Sbjct: 340 LVFGSMTGTHGAARLRRLDLETGQWQTLDYSAQASDFDYAPRYSPDGHWIVFVRNPQLGD 399 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL------ 289 + R+ +R + R + +G + + D +Y +DL Sbjct: 400 LWRIPAQGGAAERLTHDNADIRGW----SWLPDGSGLIFGRRVDSEARLYRLDLIDSSLH 455 Query: 290 -------------------------------------QSNATERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 456 DLGVDDAQAPDVAHGHLVFVQRKPQFGMYQVIHDSMNGGYIRRRLFPSSGRDDQPMIAPD 515 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFT-KFSGEK 370 Q++F S+R G L+ + S R+ + + S WS + + + Sbjct: 516 GHQLIFASNRSGTYGLWWGDVSKSSSVRLIEGLRPDSRQAADWSADSQRVLVSGSDANGH 575 Query: 371 FAIGVMKKDGSQERLL 386 A+ + + L Sbjct: 576 AALFEVTPSTGKVVRL 591 >gi|218265119|ref|ZP_03478701.1| hypothetical protein PRABACTJOHN_04411 [Parabacteroides johnsonii DSM 18315] gi|218221574|gb|EEC94224.1| hypothetical protein PRABACTJOHN_04411 [Parabacteroides johnsonii DSM 18315] Length = 1079 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 140/342 (40%), Gaps = 26/342 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKK-FFSSPASWRKIAHTISDDIYQSITGEKGDFNS 175 + +R+ EFR W + + I + DI G++ F S Sbjct: 176 KQLAYNRVMREFRTWKYYKGGMADDIWIYNPDRKTVENITDNPAQDIIPMWIGDEIFFLS 235 Query: 176 -RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ V + K + V D ++++ + + + I+FE N + + Sbjct: 236 DRDRTMNIFVYNTKTKQTDKVTDFTEYDVKFPSANGNMIVFE-----NGGYIYKMDAGSK 290 Query: 235 DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 +V + T + + I + + S +G+R +++ + +++++ ++ Sbjct: 291 KPEKVNITLTSDNIYARSEIKDGAGYLTEASLSPDGERLVVTARG----EVFNLPVEKGV 346 Query: 294 TERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 T+ +T + + A +SPD IV+ SD G+ +LY+ + G + ++++D + Sbjct: 347 TKNITRSPGAHDRDAQWSPDGKFIVYISDATGETELYMQDATGGEPVQLTKDNDTYIRSF 406 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 SP + +T + ++ Q L++D + T+SP + L ++R Sbjct: 407 ELSPDSKTLVYTDRKN---RVNLLDIATKQVTTLLQDPMGEPRGVTFSPDSKWLTYTRT- 462 Query: 411 DGDTGSKLYSIDLNGRNETLIN-------TPAYASDPQWVGF 445 + S +Y +L R E + +P +++D +++ F Sbjct: 463 GNNEYSIVYVYNLVDRKEYPVTDKWYDSSSPVFSTDGKYLVF 504 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y V RLT+ + + +SPD I F +G + Sbjct: 34 NGNEIVFSYAGD----LYKVPATGGEAGRLTSHVGYEMFPRFSPDGKTIAFTGQYDGNTE 89 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKF--AIG 374 +Y M G + R++ D P W+P G I + + F + Sbjct: 90 VYTMPVTGGEPLRVTYTATNSRDDLGDRMGPNNIVMTWTPDGSRIVYRNRISDGFSGKLF 149 Query: 375 VMKKDGS--QERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSIDL 423 ++K+G + L E ++SP G+ L ++R G ++ + Sbjct: 150 TVEKEGGLSEVIPLPEGGFC---SYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWIYNP 206 Query: 424 NGRN-ETLINTPAYASDPQWVG 444 + + E + + PA P W+G Sbjct: 207 DRKTVENITDNPAQDIIPMWIG 228 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 11/244 (4%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 F + S + + D R L E SP+ +++ Sbjct: 274 IVFENGGYIYKMDAGSKKPEKVNITLTSDNIYARSEIKDGAGYLTEASLSPDGERLVVTA 333 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + V+ + + + ++S +GK + ++Y D Sbjct: 334 RGE-----VFNLPVEKGVTKNITRSPGAHDRDAQWSPDGKFIVYISDATGETELYMQDAT 388 Query: 291 SNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 +LT + S SPDS +V+ DR K ++ ++ + QD Sbjct: 389 GGEPVQLTKDNDTYIRSFELSPDSKTLVYT-DR--KNRVNLLDIATKQVTTLLQDPMGEP 445 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAI-GVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 +SP + +T+ +++I V D + + + + +P +S G+ L+F+ Sbjct: 446 RGVTFSPDSKWLTYTRTGNNEYSIVYVYNLVDRKEYPVTDKWYDSSSPVFSTDGKYLVFA 505 Query: 408 RKKD 411 +D Sbjct: 506 SARD 509 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 98/280 (35%), Gaps = 48/280 (17%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G LT S PRFSP+ + +A+ D + VY M P Sbjct: 45 DLYKVPATGGEAGRLT-SHVGYEMFPRFSPDGKTIAFTGQYDGNT-EVYTMPV-TGGEPL 101 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI--SVQKDEAMDIYSVDLQSNATERL 297 R+ + ++ +G R + + + +++V+ + +E + Sbjct: 102 RVTYTATNSRDDLGDRMGPNNIVMTWTPDGSRIVYRNRISDGFSGKLFTVEKEGGLSEVI 161 Query: 298 TNTLFINISASYSPDSSQIVFES----DREGK-------EQLYVMQSNGSDQKRISQDKE 346 SYSPD Q+ + R K + +++ + + I+ D Sbjct: 162 PLPEG--GFCSYSPDGKQLAYNRVMREFRTWKYYKGGMADDIWIYNPDRKTVENIT-DNP 218 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSL 404 A P+W GD I F I V Q + + + +++ P S +G + Sbjct: 219 AQDIIPMW--IGDEIFFLSDRDRTMNIFVYNTKTKQTDKVTDFTEYDVKFP--SANGNMI 274 Query: 405 IFSRKKDGDTGSKLYSIDLNGR-----NETLINTPAYASD 439 +F + G +Y +D + N TL + YA Sbjct: 275 VF------ENGGYIYKMDAGSKKPEKVNITLTSDNIYARS 308 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 26/223 (11%) Query: 107 GAQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 GA L + +G+ RL V R ++++ K + S A R Sbjct: 313 GAGYLTEASLSPDGE-RLVVTARGEVFNLPVEKGVTKNITRSPGAHDRDA---------- 361 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 G F I+++S++ + L + D G LT D + SP+ + Sbjct: 362 -QWSPDGKF---IVYISDATG----ETELYMQDATGGEPVQLTKDNDTYIRSFELSPDSK 413 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 + Y + RV L+D + + + FS + K + + I Sbjct: 414 TLVYTDRKN----RVNLLDIATKQVTTLLQDPMGEPRGVTFSPDSKWLTYTRTGNNEYSI 469 Query: 285 -YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 Y +L +T+ + + S +S D +VF S R+ Sbjct: 470 VYVYNLVDRKEYPVTDKWYDSSSPVFSTDGKYLVFASARDFNP 512 >gi|302823172|ref|XP_002993240.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii] gi|300138910|gb|EFJ05661.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii] Length = 717 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 96/267 (35%), Gaps = 43/267 (16%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P FSP+ + +A+ DE +Y+ K F + K L + Sbjct: 426 FPVFSPDGESIAFIPDLDEGG--IYVTRLNGSGLTKV---FDKPAFGLSWDKQRKGVLYT 480 Query: 276 VQKDEAMD-------IYSVDLQ-----SNATER---LT-NTLFINISASYSPDSSQIVFE 319 + + ++ + LT + N S SPD IVF Sbjct: 481 SYGPGFVPEDTIVHIVSILNADELIAGGGGEVKWKILTKSGTKNNAFPSPSPDGKWIVFR 540 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDP--VWSPQGDLIAFTKFS----GEKFAI 373 S R G + LY+M + ++ + + E ++ D WS G+ IAF+ G F + Sbjct: 541 SGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWIAFSSDRHNPGGGSFQL 600 Query: 374 GVMKKDGSQE-RLL--VEDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKL 418 ++ DGSQ R+L + P +SP RSL+F+ G ++ Sbjct: 601 YFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSLVFTTDYAGVSADPIAVPAQFQPYGEI 660 Query: 419 YSIDLNGRNETLINTPAY-ASDPQWVG 444 + ++G + AY P W Sbjct: 661 FMARIDGSELVRLTHNAYEDGTPSWGP 687 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 129/411 (31%), Gaps = 102/411 (24%) Query: 130 LWD---VKDRKQIIGKKFFSSPASWRKIAHTISDDIY---------QSITGEKGDFNSRI 177 L+D V D + I S + A S DI + +T + Sbjct: 183 LYDRPSVADGRVIFVSTRKRREQSRQSWAAVYSMDIVTKKITRLTPEGVTDYSPSVSPSG 242 Query: 178 LFVSESVVSGIIKN-SLCVMDRDGANIRYLTPSRDQILF----EPRFSPNQQKVAYATYD 232 FV + G + +D D + + S +++ P +S + V + Sbjct: 243 KFVMVASDDGRGWGGEIEELDTDLYSFQAWDGSGRKLVVKNGGWPSWS-DDSTVFFHRRA 301 Query: 233 DEDILRVY---LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS--V 287 ++ VY + +RI P S GK ++ ++ ++ + Sbjct: 302 EDGWWSVYKATFSKSFTAIREERITPPGVHAFTPAASRTGKWIAVATRRAGSLYRHVEVF 361 Query: 288 DLQSNATERLTNTLFINIS----------------------------------------- 306 DL S +++ + Sbjct: 362 DLGSRKFHKVSELVAPEAHHYNPFVSPESDKIGYHRCRGKGVTPRLEHIKSPVPGISLVR 421 Query: 307 -----ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +SPD I F D + + +YV + NGS +++ + F W Q + Sbjct: 422 VDGDFPVFSPDGESIAFIPDLD-EGGIYVTRLNGSG---LTKVFDKPAFGLSWDKQRKGV 477 Query: 362 AFTKFSGE-------KFAIGVMKKD-----GSQE---RLLVEDS--NLQAPTWSPSGRSL 404 +T + + ++ D G E ++L + N P+ SP G+ + Sbjct: 478 LYTSYGPGFVPEDTIVHIVSILNADELIAGGGGEVKWKILTKSGTKNNAFPSPSPDGKWI 537 Query: 405 IFSRKKDGDTGSKLYSID-LNGRNETLI---------NTPAYASDPQWVGF 445 +F + G LY +D ++G +L +++ D +W+ F Sbjct: 538 VFRSGRSGHKN--LYIMDAIHGEEASLRRLTEGAWTDTMASWSHDGEWIAF 586 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 22/174 (12%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILA 262 + LT S + P SP+ + + + + L + + + +R+ Sbjct: 515 KILTKSGTKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAIHGEEASLRRLTEGAWTDTM 574 Query: 263 PRFSSNGKRALISVQK----DEAMDIYSVDLQSNATERLTNTL--FINISASYSPDSSQI 316 +S +G+ S + + +Y V + R+ N+ +SPDS + Sbjct: 575 ASWSHDGEWIAFSSDRHNPGGGSFQLYFVRPDGSQLHRVLNSSTGGRVNHPFFSPDSRSL 634 Query: 317 VFESDREG--------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 VF +D G ++++ + +GS+ R++ + P W P Sbjct: 635 VFTTDYAGVSADPIAVPAQFQPYGEIFMARIDGSELVRLTHNA-YEDGTPSWGP 687 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 100/283 (35%), Gaps = 20/283 (7%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNS---LCVMDRDGANIRYLTPSRDQILFEPRFSP 221 ++ + R++FVS + S + MD I LTP + P SP Sbjct: 182 ALYDRPSVADGRVIFVSTRKRREQSRQSWAAVYSMDIVTKKITRLTPEG-VTDYSPSVSP 240 Query: 222 NQQKVAYATYDDED-ILRVYLMDTRIDRAPKRIGNFRSMIL----APRFSSNGKRALISV 276 + + V A+ D + +DT + G+ R +++ P +S + Sbjct: 241 SGKFVMVASDDGRGWGGEIEELDTDLYSFQAWDGSGRKLVVKNGGWPSWSDDSTVFFHRR 300 Query: 277 QKDEAMDIYSVDLQSN----ATERLTNTLFINISASYSPDSSQIVFESDREGK--EQLYV 330 +D +Y + ER+T + + S I + R G + V Sbjct: 301 AEDGWWSVYKATFSKSFTAIREERITPPGVHAFTPAASRTGKWIAVATRRAGSLYRHVEV 360 Query: 331 MQSNGSDQKRISQ--DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 ++S+ EA +++P SP+ D I + + G+ + + + Sbjct: 361 FDLGSRKFHKVSELVAPEAHHYNPFVSPESDKIGYHRCRGKGVTPRLEHIKSPVPGISLV 420 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + P +SP G S+ F D +Y LNG T + Sbjct: 421 RVDGDFPVFSPDGESIAFIPDLDEGG---IYVTRLNGSGLTKV 460 >gi|86142431|ref|ZP_01060941.1| putative exported tricorn protease [Leeuwenhoekiella blandensis MED217] gi|85831183|gb|EAQ49640.1| putative exported tricorn protease [Leeuwenhoekiella blandensis MED217] Length = 1080 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 33/234 (14%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P S +A+ +D + R P+R+ + P FS +GK S Sbjct: 34 PAISN--THIAFIYAED------LWVANRDGSQPRRLTIDEGVESNPIFSPDGKTIAFSA 85 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE----GKEQLYVMQ 332 + D MDI+SV + RLT + +I+ ++PD +VF S R L+ + Sbjct: 86 EYDGNMDIFSVPVTGGVPTRLTFHPYPDIARDFTPDGKSVVFASQRTLFTNRYTSLFTVP 145 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVMKKDGS 381 +G +S+ + + + +S G IA+T G + I + Sbjct: 146 LSGGP---VSELEIPNAYWASYSEDGKYIAYTPIPDRFNQWKHYRGGTQTRIYIYDTATQ 202 Query: 382 QERLL---VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + SN P + G S+ F +DG+ LY+ DL + + + Sbjct: 203 EVVEIPKPAAGSNDAQPEFI--GNSVYFRSDRDGEF--NLYAYDLASKQVSKLT 252 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 35/260 (13%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + N+ I F+ L V +RDG+ R LT + + P FSP+ + Sbjct: 29 RLMDAPAISNTHIAFI--------YAEDLWVANRDGSQPRRLTID-EGVESNPIFSPDGK 79 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DE 280 +A++ D + + ++ + P R+ +A F+ +GK + + Q+ + Sbjct: 80 TIAFSAEYDGN-MDIFSVPV-TGGVPTRLTFHPYPDIARDFTPDGKSVVFASQRTLFTNR 137 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE----------SDREGKE-QLY 329 +++V L L ASYS D I + R G + ++Y Sbjct: 138 YTSLFTVPLSGGPVSELEIPNAY--WASYSEDGKYIAYTPIPDRFNQWKHYRGGTQTRIY 195 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQ--GDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + + I + S P+ G+ + F +F + Q L Sbjct: 196 IYDTATQEVVEIPKPAAGSNDAQ---PEFIGNSVYFRSDRDGEFNLYAYDLASKQVSKLT 252 Query: 388 E--DSNLQAPTWSPSGRSLI 405 + D L+ S G ++ Sbjct: 253 DFKDFGLEDLEASSDGMLIL 272 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 54/341 (15%), Positives = 101/341 (29%), Gaps = 82/341 (24%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------ 229 ++F S+ + SL + G + L + +S + + +AY Sbjct: 124 SVVFASQRTLFTNRYTSLFTVPLSGGPVSELEIPN---AYWASYSEDGKYIAYTPIPDRF 180 Query: 230 ----TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALISVQKDEAMDI 284 Y R+Y+ DT + A P F G +D ++ Sbjct: 181 NQWKHYRGGTQTRIYIYDTATQEVVEIPKPAAGSNDAQPEF--IGNSVYFRSDRDGEFNL 238 Query: 285 YSVDLQSNATERLTNTLFINIS------------------ASYSPDSSQIV--------- 317 Y+ DL S +LT+ + +++P + Q+ Sbjct: 239 YAYDLASKQVSKLTDFKDFGLEDLEASSDGMLILEQAGYLHTFNPSTKQLTNLKIGIATD 298 Query: 318 -------FESD----REG-------------KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 F S R G + ++ + S D ++Q P Sbjct: 299 LLELRPRFVSGSYYVRSGGISPSGARVVADFRGEIVTLPSEKGDMVNLTQTPGVHETFPA 358 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMK---KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 WSP IA+ + ++A+ + D ++ L WSP + + Sbjct: 359 WSPDSKHIAYFSDASGEYALHIKDQNSTDAAKAIALDGTGFYAHLHWSPDSEKIAYV--- 415 Query: 411 DGDTGSKLYSIDL-NGRNET----LINTPAYASD--PQWVG 444 D G LY + G+ + ++ P D W Sbjct: 416 --DNGRNLYITTVATGKTQKVAQDVLYQPGEYRDLFGSWSA 454 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 D +R S + SP+ +V + + + + Sbjct: 298 DLLELRPRFVSGSYYVRSGGISPSGARVV-----ADFRGEIVTLPSEKGDMVNLTQTPGV 352 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQI 316 P +S + K ++ D S + + +SPDS +I Sbjct: 353 HETFPAWSPDSKHIAYFSDASGEYALHIKDQNSTDAAKAIALDGTGFYAHLHWSPDSEKI 412 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQD-----KEASYFDPVWSPQGDLIAFTKFSGEKF 371 + + LY+ ++++QD E WS G+ +A+T + F Sbjct: 413 AYV---DNGRNLYITTVATGKTQKVAQDVLYQPGEYRDLFGSWSADGNWLAYTLITNTNF 469 Query: 372 A-IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 V ++ + + SN+ PT+ PSG+ L + D + Sbjct: 470 EQAYVYSLSENKSYPISDGLSNVTEPTFDPSGKYLYLTASTDAGPVVNWFD 520 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 74/217 (34%), Gaps = 11/217 (5%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S + S + V + + + + ++ LT + P +SP+ + +AY + Sbjct: 315 SGGISPSGARVVADFRGEIVTLPSEKGDMVNLTQTPGVHETFPAWSPDSKHIAYFSDASG 374 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + D A + +S + ++ D ++Y + + T Sbjct: 375 EYALHIKDQNSTDAAKAIALDGTGFYAHLHWSPDSEKIAYV---DNGRNLYITTVATGKT 431 Query: 295 ERLTN------TLFINISASYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEA 347 +++ + ++ S+S D + + + EQ YV + + IS D + Sbjct: 432 QKVAQDVLYQPGEYRDLFGSWSADGNWLAYTLITNTNFEQAYVYSLSENKSYPIS-DGLS 490 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + +P + P G + T + + + Sbjct: 491 NVTEPTFDPSGKYLYLTASTDAGPVVNWFDQSNQDMT 527 >gi|288555459|ref|YP_003427394.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Bacillus pseudofirmus OF4] gi|288546619|gb|ADC50502.1| peptidase S9 prolyl oligopeptidase active site domain protein [Bacillus pseudofirmus OF4] Length = 663 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 53/241 (21%) Query: 216 EPRFSPNQQKVAYATY----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P+ SP+ + V + D D + + ++ P +S +G+ Sbjct: 18 NPQLSPDGKNVVFVQTVINEDKHDYESHLFISDIDGKQVRQWTFGDGSDNTPAWSPDGRF 77 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------------ 319 + + IY + + ++T+ L + +SPDSS+I+FE Sbjct: 78 IAFTSTRSGKSQIYLISAEGGEARQITSCLNGAKNPIWSPDSSKILFEGSLAPNEKLTDK 137 Query: 320 ------------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYF 350 SD G + L ++ + +++ D + + Sbjct: 138 KRDKKEKNGDKLPEPMVVERIRYKSDATGFLDDKNQHLGIVTVETGEVLQLT-DGDRDHA 196 Query: 351 DPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRS 403 WS G I F+ GE + +M Q + +P +SP G+ Sbjct: 197 AGAWSADGQSIVFSADLGEDPDFSHISDVYIMSLADKQLTKITPSTGFFGSPNYSPDGKY 256 Query: 404 L 404 + Sbjct: 257 I 257 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 91/309 (29%), Gaps = 74/309 (23%) Query: 177 ILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 ++FV + L + D DG +R T D P +SP+ + +A+ + Sbjct: 28 VVFVQTVINEDKHDYESHLFISDIDGKQVRQWTFG-DGSDNTPAWSPDGRFIAFTSTRSG 86 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ----------------- 277 ++YL+ ++I + + P +S + + L Sbjct: 87 KS-QIYLISAE-GGEARQITSCLNGAKNPIWSPDSSKILFEGSLAPNEKLTDKKRDKKEK 144 Query: 278 ------------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 D+ + V +++ +LT+ + + ++S D Sbjct: 145 NGDKLPEPMVVERIRYKSDATGFLDDKNQHLGIVTVETGEVLQLTDGDRDHAAGAWSADG 204 Query: 314 SQIVFESDREGKE------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 IVF +D +Y+M +I+ + P +SP G I Sbjct: 205 QSIVFSADLGEDPDFSHISDVYIMSLADKQLTKITPST-GFFGSPNYSPDGKYITLIGHE 263 Query: 367 ----SGEKFAIGVMKKDGSQERLLVEDSN----------------LQAPTWSPSGRSLIF 406 S + + + + L D + Q W+ + F Sbjct: 264 KEYKSATLSRVWLYELESQSLHCLTADLDIHVGDIAIGDFHSAIVDQGAVWTNDSKGFYF 323 Query: 407 SRKKDGDTG 415 G T Sbjct: 324 LVTDQGRTA 332 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Query: 306 SASYSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + SPD +VF + + L++ +G ++ + + S P WSP G Sbjct: 18 NPQLSPDGKNVVFVQTVINEDKHDYESHLFISDIDGKQVRQWTF-GDGSDNTPAWSPDGR 76 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 IAFT K I ++ +G + R + + + P WSP ++F Sbjct: 77 FIAFTSTRSGKSQIYLISAEGGEARQITSCLNGAKNPIWSPDSSKILF 124 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 29/213 (13%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGN 255 G ++ RD +S + Q + ++ ED ++ D I D+ +I Sbjct: 183 GEVLQLTDGDRDHAAG--AWSADGQSIVFSADLGEDPDFSHISDVYIMSLADKQLTKITP 240 Query: 256 FRSMILAPRFSSNGKRALISVQKDEA-----MDIYSVDLQSNATERLTNTLFI------- 303 +P +S +GK + + E ++ +L+S + LT L I Sbjct: 241 STGFFGSPNYSPDGKYITLIGHEKEYKSATLSRVWLYELESQSLHCLTADLDIHVGDIAI 300 Query: 304 --------NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + A ++ DS F +G+ +Y G + + + + Sbjct: 301 GDFHSAIVDQGAVWTNDSKGFYFLVTDQGRTAVYYGTIEGEMYPAM--NDNEHVYGMTIN 358 Query: 356 PQ-GDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 P + +A + + + L Sbjct: 359 PDTHEAVAAISNPTHPGDLFKVNLSTGERTQLT 391 Score = 38.8 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 11/71 (15%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLI-------NTP 434 L + +++ P SP G++++F + D S L+ D++G+ NTP Sbjct: 10 LYKLKSVKNPQLSPDGKNVVFVQTVINEDKHDYESHLFISDIDGKQVRQWTFGDGSDNTP 69 Query: 435 AYASDPQWVGF 445 A++ D +++ F Sbjct: 70 AWSPDGRFIAF 80 >gi|260173764|ref|ZP_05760176.1| putative peptidase/protease family protein [Bacteroides sp. D2] gi|315922028|ref|ZP_07918268.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695903|gb|EFS32738.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1083 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGTEIVFCYKGD----IYKVPAQGGTAVQLTTQASYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGVARRLTY-HSASEIPSAFTPDGKYVLFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + DG + ++ + + +G++ ++ +K Sbjct: 126 SIQDPANSALFPTGAMTELYKVSVDGGRTEQVLATP-AELVCFDKAGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNRGGEDRNPVYAP 225 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 83/237 (35%), Gaps = 36/237 (15%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGTEIVFCY--KGDIYKVPAQ----GGTAVQLTTQASYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + RLT I ++++PD ++F + Sbjct: 78 AFASDRNGNFDLFIMPADGGVARRLTYHSASEIPSAFTPDGKYVLFSASIQDPANSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAF------------TKFSG 368 +LY + +G ++ ++ E FD G + S Sbjct: 138 TGAMTELYKVSVDGGRTEQVLATPAELVCFDKA----GKNFLYQDRKGFEDEWRKHHTSS 193 Query: 369 EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + P ++P G ++ F +++G + +Y+ LN Sbjct: 194 ITRDIWLYNTQTGKHTNLTNRGGEDRNPVYAPDGNTVYFLSERNGGS-FNVYTFPLN 249 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 98/310 (31%), Gaps = 81/310 (26%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM------- 259 +R P ++P+ V + + + VY + K + F++ Sbjct: 211 LTNRGGEDRNPVYAPDGNTVYFLSERNGGSFNVYTFPLNTPQEVKAVTTFKTHPVRFLSV 270 Query: 260 ----------------------------------------------ILAPRFSSNGKRAL 273 + S +GK+ Sbjct: 271 SDKGTLCYTYDGELYTQKPGARPEKVKVELVRDDDEQVAALKFSQGATSASVSPDGKQVA 330 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-- 331 V+ D ++ T+++TNT S S++PD+ +V+ S+R G QLY Sbjct: 331 FIVRGD----VFVTSTDYATTKQITNTPAKEASVSFAPDNRTLVYASERTGNWQLYTAKI 386 Query: 332 ---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + K P +SP G +AF + + V+ + Sbjct: 387 SRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDRN---RLMVLDLKTKK 443 Query: 383 ERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R + + S WSP G+ L F + D S + + G T + Sbjct: 444 VRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDIGIVSAQGGAITNLTNS 502 Query: 435 AYAS-DPQWV 443 Y S P+WV Sbjct: 503 GYISGSPRWV 512 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ D + + K+I N + + F+ + + + + + Sbjct: 321 SVSPDGKQVAFIVRGD------VFVTSTDYATTKQITNTPAKEASVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLDLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + +P W G +++F ++ G Sbjct: 492 QGGAITNLTNSGYISGSPRWVLDGNAILFQTERYG 526 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 79/234 (33%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQAS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 +R+ + + F+ +GK L S ++Y V + TE++ Sbjct: 98 VARRLTYHSASEIPSAFTPDGKYVLFSASIQDPANSALFPTGAMTELYKVSVDGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ Sbjct: 158 LATPAELV--CFDKAGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLTNR 214 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV++P G+ + F ++ +G F + + QE V + Sbjct: 215 G-GEDRNPVYAPDGNTVYFLSERNGGSFNVYTFPLNTPQEVKAVTTFKTHPVRF 267 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQVAFIVRGDVF-VTSTDYATTKQITNTPAKEASVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERAYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ ++D + + +++ + +S +GK I + D DI Sbjct: 429 -EDRNRLMVLDLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDI 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q A LTN+ +I+ S + D + I+F+++R G Sbjct: 487 GIVSAQGGAITNLTNSGYISGSPRWVLDGNAILFQTERYG 526 >gi|325280803|ref|YP_004253345.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] gi|324312612|gb|ADY33165.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] Length = 1110 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 33/229 (14%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P SP+ + +A+ D ++L+ + RA + + + P +S +G Sbjct: 24 NPLWMRYPAISPDGKTIAFCYKGD-----IFLVSSEGGRATQ-LTTHPAYDSRPVWSPDG 77 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR------- 322 K + +DE +++Y+V + RLT I ++PD +I++ S+ Sbjct: 78 KTIAFTSARDEGLNLYTVPVSGGTPTRLTYYSGSEIPVCFTPDGKEILYRSNVMPDAEYG 137 Query: 323 --EGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA------- 372 Q+Y + +G ++ ++ D FD ++ +GD I + + G + Sbjct: 138 QFPSGGQVYKISVDGGRPEQFLTFD----AFDINFNKKGDKIIYHDYKGYEDNWRKHHKS 193 Query: 373 -----IGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTG 415 I + + L + P ++ + ++ F ++ GD Sbjct: 194 SVCRDIWIHDLKSGEFTNLTNKQVEDRNPVFADNDENIYFLSERFGDFN 242 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 113/304 (37%), Gaps = 39/304 (12%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D+ ++ GDFN + +S S I + + +R+L+ S D +L + Sbjct: 228 DENIYFLSERFGDFN--VCKMSLKNPSDIKQ----ITKHSKHPVRFLSSSEDGLLC---Y 278 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 N + L V ++ + ++ R S +GK V+ D Sbjct: 279 FFNGEIYTLQPGKQPKKLAVDIIADNTESPIAKMNWNRGASEM-ALSPDGKEFAFIVRGD 337 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS--- 336 +Y + + T+R+TNT S +SPD +V+ +R G +YV + Sbjct: 338 ----VYVANAEYGTTKRITNTATQERSVEFSPDGRSLVYAGERNGHWNIYVARIKDKDDK 393 Query: 337 --------DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-- 386 ++++I++ A F P +SP G IA+ + I V+ + R + Sbjct: 394 SFAYAKEIEEEQITKGTNA-CFQPSFSPDGKEIAYLENRT---EIKVINLKSKKSRTVLP 449 Query: 387 -----VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYAS 438 Q WSP GR ++ + G L D +G L N+ Sbjct: 450 AKYNYSYQDGDQWYQWSPDGRWILAKYFEHGGWQHNDIALVKADGSGEIHNLTNSGYSDQ 509 Query: 439 DPQW 442 +P+W Sbjct: 510 NPKW 513 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 91/235 (38%), Gaps = 37/235 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++ A+ D VY+ + KRI N + + FS +G+ + + + Sbjct: 322 ALSPDGKEFAFIVRGD-----VYVANAEYGT-TKRITNTATQERSVEFSPDGRSLVYAGE 375 Query: 278 KDEAMDIYSVDLQSN-----------ATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 ++ +IY ++ E++T S+SPD +I + +R Sbjct: 376 RNGHWNIYVARIKDKDDKSFAYAKEIEEEQITKGTNACFQPSFSPDGKEIAYLENRT--- 432 Query: 327 QLYVMQSNGSDQKRISQDKEASYF-----DPVWSPQGDLIAFTKFSGEKFA---IGVMKK 378 ++ V+ + + K + WSP G I F + I ++K Sbjct: 433 EIKVINLKSKKSRTVLPAKYNYSYQDGDQWYQWSPDGRWILAKYFEHGGWQHNDIALVKA 492 Query: 379 DGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLN 424 DGS E L + Q P W +G+++I+S + G +Y++ L+ Sbjct: 493 DGSGEIHNLTNSGYSDQNPKWMMNGKAIIWSTDRQGMRSHGSWGAQYDIYALFLD 547 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 79/226 (34%), Gaps = 28/226 (12%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + ++ +G LT P +SP+ + +A+ + DE L +Y + Sbjct: 44 YKGDIFLVSSEGGRATQLTT-HPAYDSRPVWSPDGKTIAFTSARDEG-LNLYTVPV-SGG 100 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISV---------QKDEAMDIYSVDLQSNATERLTN 299 P R+ + + F+ +GK L Q +Y + + E+ Sbjct: 101 TPTRLTYYSGSEIPVCFTPDGKEILYRSNVMPDAEYGQFPSGGQVYKISVDGGRPEQFLT 160 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQ------------LYVMQSNGSDQKRISQDKEA 347 +I +++ +I++ + ++ +++ + ++ +K+ Sbjct: 161 FDAFDI--NFNKKGDKIIYHDYKGYEDNWRKHHKSSVCRDIWIHDLKSGEFTNLT-NKQV 217 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLVEDSNL 392 +PV++ + I F F + M S + + + S Sbjct: 218 EDRNPVFADNDENIYFLSERFGDFNVCKMSLKNPSDIKQITKHSKH 263 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 102/327 (31%), Gaps = 84/327 (25%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + ++ ++ + N V G R S +I F+P+ +++ Y Sbjct: 70 RPVWSPDGKTIAFTSARDEGLNLYTVPVSGGTPTRLTYYSGSEIPV--CFTPDGKEILYR 127 Query: 230 TYDDED--------ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + D +VY + R P++ F + + F+ G + + K Sbjct: 128 SNVMPDAEYGQFPSGGQVYKISVDGGR-PEQFLTFDAFDI--NFNKKGDKIIYHDYKGYE 184 Query: 282 M------------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 DI+ DL+S LTN + + ++ + I F S+R G + Sbjct: 185 DNWRKHHKSSVCRDIWIHDLKSGEFTNLTNKQVEDRNPVFADNDENIYFLSERFGDFNVC 244 Query: 330 VMQS-NGSDQKRIS---------------------QDKEASYFDP--------------- 352 M N SD K+I+ + E P Sbjct: 245 KMSLKNPSDIKQITKHSKHPVRFLSSSEDGLLCYFFNGEIYTLQPGKQPKKLAVDIIADN 304 Query: 353 -----------------VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-A 394 SP G AF + V + + + + + + Sbjct: 305 TESPIAKMNWNRGASEMALSPDGKEFAFIVRGD----VYVANAEYGTTKRITNTATQERS 360 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +SP GRSL+++ +++G + I Sbjct: 361 VEFSPDGRSLVYAGERNGHWNIYVARI 387 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 P SP G IAF I ++ +G + +L + P WSP G+++ F+ + Sbjct: 31 PAISPDGKTIAFCYKGD----IFLVSSEGGRATQLTTHPAYDSRPVWSPDGKTIAFTSAR 86 Query: 411 DGDTGSKLYSIDLNGRNETLIN 432 D G LY++ ++G T + Sbjct: 87 --DEGLNLYTVPVSGGTPTRLT 106 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 212 QILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 F+P FSP+ +++AY E ++ + +R K +++ ++S +G+ Sbjct: 411 NACFQPSFSPDGKEIAYLENRTEIKVINLKSKKSRTVLPAKYNYSYQDGDQWYQWSPDGR 470 Query: 271 RALISVQKDEAM---DIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 L + DI V LTN+ + + + + + I++ +DR+G Sbjct: 471 WILAKYFEHGGWQHNDIALVKADGSGEIHNLTNSGYSDQNPKWMMNGKAIIWSTDRQG 528 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ P SP G+++ F K ++ + G T + T PAY S P W Sbjct: 28 MRYPAISPDGKTIAFCYK------GDIFLVSSEGGRATQLTTHPAYDSRPVWSP 75 >gi|329889327|ref|ZP_08267670.1| prolyl oligopeptidase family protein [Brevundimonas diminuta ATCC 11568] gi|328844628|gb|EGF94192.1| prolyl oligopeptidase family protein [Brevundimonas diminuta ATCC 11568] Length = 698 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 117/314 (37%), Gaps = 62/314 (19%) Query: 175 SRILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 +I +V ++ + ++ ++ ++D L S +PR+SP+ +++Y + Sbjct: 62 GQIAYVRQTADIMTDRMRPTIWLIDVKTGRHSPLVAS-AGSHRQPRWSPDGTRLSYISSA 120 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV---------------- 276 + ++++ R+ N + + +S NG++ SV Sbjct: 121 EGGAPQLFV-RWMASGESVRVTNLPNTPSSVSWSPNGEQLAYSVLVPGEKPKIGSPLAKP 179 Query: 277 ------------------------QKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSP 311 K ++ V Q +LT+ F + S+S Sbjct: 180 EGAQWAPPLEIIDSVSYRSDGQGYLKPGFRHVFVVGSQGGGARQLTHGDFHHGGGLSWSA 239 Query: 312 DSSQIVFESDREGKEQ-------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 DS + ++R Q ++ + ++ + PV SP G IA+ Sbjct: 240 DSRTLYLSANRRPDWQREAADSEVFALDVQTGGLTALTS-RAGPDNAPVASPDGRRIAYL 298 Query: 365 KFSGEKF-----AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 + ++ + VM DGS R L E D ++Q+P WS GRS+ + G T K Sbjct: 299 GYDDKRMGYHNTRLYVMDADGSNSRALTESLDRSVQSPVWSRDGRSVYVAYDDQGRT--K 356 Query: 418 LYSIDLNGRNETLI 431 + + ++G TLI Sbjct: 357 VARVSMDGAVTTLI 370 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 105/323 (32%), Gaps = 62/323 (19%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDE 234 ++++ V SL DR + L ++ + + SP+ ++AY D Sbjct: 20 MAQTAVQPAAAPSLPTADRGLFTAQDLF--GMEVASDAQISPDGGQIAYVRQTADIMTDR 77 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA-LISVQKDEAMDIYSVDLQSNA 293 ++L+D + R + + S PR+S +G R IS + A ++ + S Sbjct: 78 MRPTIWLIDVKTGRHSPLVASAGSH-RQPRWSPDGTRLSYISSAEGGAPQLFVRWMASGE 136 Query: 294 TERLTNTLFINISASYSPDSSQIVF--------------------------------ESD 321 + R+TN S S+SP+ Q+ + S Sbjct: 137 SVRVTNLPNTPSSVSWSPNGEQLAYSVLVPGEKPKIGSPLAKPEGAQWAPPLEIIDSVSY 196 Query: 322 RE--------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-- 371 R G ++V+ S G ++++ WS + + + Sbjct: 197 RSDGQGYLKPGFRHVFVVGSQGGGARQLTHGDFHHGGGLSWSADSRTLYLSANRRPDWQR 256 Query: 372 -----AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD---GDTGSKLYSID 422 + + L AP SP GR + + D G ++LY +D Sbjct: 257 EAADSEVFALDVQTGGLTALTSRAGPDNAPVASPDGRRIAYLGYDDKRMGYHNTRLYVMD 316 Query: 423 LNGRNETLIN--TPAYASDPQWV 443 +G N + P W Sbjct: 317 ADGSNSRALTESLDRSVQSPVWS 339 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 23/226 (10%) Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD------- 283 Y V+++ ++ A + +S++ + +S + Sbjct: 203 YLKPGFRHVFVVGSQGGGARQLTHGDFHHGGGLSWSADSRTLYLSANRRPDWQREAADSE 262 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD---REG--KEQLYVMQSNGSDQ 338 ++++D+Q+ LT+ + + SPD +I + R G +LYVM ++GS+ Sbjct: 263 VFALDVQTGGLTALTSRAGPDNAPVASPDGRRIAYLGYDDKRMGYHNTRLYVMDADGSNS 322 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ----- 393 + +++ + S PVWS G + + + + DG+ L+ + + Sbjct: 323 RALTESLDRSVQSPVWSRDGRSVYVAYDDQGRTKVARVSMDGAVTTLIEDLTGDDIGRPY 382 Query: 394 ---APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 T + G ++ ++R GR+ L A Sbjct: 383 TGGGFTVADDG-AIAYTRGTPTRPADVHVL--KGGRSTQLTRLNAD 425 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 7/102 (6%) Query: 350 FDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVED-SNLQAPTWSPSGR 402 D SP G IA+ + + + I ++ + LV + + P WSP G Sbjct: 53 SDAQISPDGGQIAYVRQTADIMTDRMRPTIWLIDVKTGRHSPLVASAGSHRQPRWSPDGT 112 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L + +G +G + + N P S W Sbjct: 113 RLSYISSAEGGAPQLFVRWMASGESVRVTNLPNTPSSVSWSP 154 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 10/131 (7%) Query: 176 RILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 RI ++ G L VMD DG+N R LT S D+ + P +S + + V Y YDD+ Sbjct: 294 RIAYLGYDDKRMGYHNTRLYVMDADGSNSRALTESLDRSVQSPVWSRDGRSV-YVAYDDQ 352 Query: 235 DILRV--YLMDTRIDRAPKRIGNF----RSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 +V MD + + + + +G A D++ Sbjct: 353 GRTKVARVSMDGAVTTLIEDLTGDDIGRPYTGGGFTVADDGAIAYTRGTPTRPADVHV-- 410 Query: 289 LQSNATERLTN 299 L+ + +LT Sbjct: 411 LKGGRSTQLTR 421 >gi|218462472|ref|ZP_03502563.1| putative periplasmic component of the Tol biopolymer transport system [Rhizobium etli Kim 5] Length = 153 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 13/150 (8%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +D+ DIY++ + A RLT+ N YS D I F S R G Q++ + Sbjct: 1 LAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTGLMQIWRI 60 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------AIGVMKKDGSQE 383 +G+ ++++ D ++F SP+ D + + F + +M DG Sbjct: 61 HPDGTGLEQVTSDNYGNWFA-HPSPKNDKVLILSYDPSVFDHPRDLDVRLRLMDMDGGNL 119 Query: 384 RLLVE----DSNLQAPTWSPSGRSLIFSRK 409 + L E + P WSP G + R Sbjct: 120 KTLFELFGGQGTINVPCWSPDGEEFAYVRY 149 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 12/151 (7%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 +AY D D+ +Y + A R+ + P +S++G+ + + M I+ Sbjct: 1 LAYCGIRD-DLFDIYTISVD-GGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTGLMQIW 58 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQI--------VFESDREGKEQLYVMQSNGSD 337 + E++T+ + N A SP + ++ VF+ R+ +L +M +G + Sbjct: 59 RIHPDGTGLEQVTSDNYGNWFAHPSPKNDKVLILSYDPSVFDHPRDLDVRLRLMDMDGGN 118 Query: 338 QKRI--SQDKEASYFDPVWSPQGDLIAFTKF 366 K + + + P WSP G+ A+ ++ Sbjct: 119 LKTLFELFGGQGTINVPCWSPDGEEFAYVRY 149 Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 +A+ + F I + DG E L P +S G+ + F+ + G +++ Sbjct: 1 LAYCGIRDDLFDIYTISVDGGAETRLTHGEGRNDGPDYSADGQWIYFNSSRTGLM--QIW 58 Query: 420 SIDLNGRNETLINTPAYA 437 I +G + + Y Sbjct: 59 RIHPDGTGLEQVTSDNYG 76 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 16/140 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + DG LT + P +S + Q + + + +++++ + + Sbjct: 12 DIYTISVDGGAETRLTHG-EGRNDGPDYSADGQWIYFNSSRTG-LMQIWRIHPDGTGLEQ 69 Query: 252 RIGNFRSMILAPRFSSNGKRA--------LISVQKDEAMDIYSVDLQSNATERLTNTLF- 302 + A S + + +D + + +D+ + L Sbjct: 70 VTSDNYGNWFA-HPSPKNDKVLILSYDPSVFDHPRDLDVRLRLMDMDGGNLKTLFELFGG 128 Query: 303 ---INISASYSPDSSQIVFE 319 IN+ +SPD + + Sbjct: 129 QGTINV-PCWSPDGEEFAYV 147 Score = 39.2 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 192 SLCVMDRDGANIRYLTP--SRDQILFEPRFSPNQQKVAYATY 231 L +MD DG N++ L + P +SP+ ++ AY Y Sbjct: 108 RLRLMDMDGGNLKTLFELFGGQGTINVPCWSPDGEEFAYVRY 149 >gi|255531812|ref|YP_003092184.1| hypothetical protein [Pedobacter heparinus DSM 2366] gi|255344796|gb|ACU04122.1| WD40 domain protein beta Propeller [Pedobacter heparinus DSM 2366] Length = 1060 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 19/201 (9%) Query: 255 NFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATER----------LTNTLFI 303 N +M +AP S +GK +KD +D++ D ++ R + + F+ Sbjct: 296 NAGNMNVAPSISPDGKYLAFLSEKDLFGIDLFLADAKTGKIIRKLSSQVANSHIDDFNFL 355 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++SPD Q F +GK QL ++ + GS R A + + WSP GD IA Sbjct: 356 ESAGTWSPDGKQFAFSIFSKGKNQLMIINIDNGSVALRADMGDVAQFGNLSWSPNGDDIA 415 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG---DTGSKL 418 F+ + I + + D+ + AP +S G+ + FS + + + + Sbjct: 416 FSGMIQGQSDIFSYNLKTKKVTQITNDAYSDYAPAYSQDGKKIAFSSDRASITKNNNTAV 475 Query: 419 YSIDL---NGRNETLINTPAY 436 +SI+L + ++TL + P + Sbjct: 476 HSINLSIYDIESKTLTDIPVF 496 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 28/248 (11%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FRSM 259 + + P SP+ + +A+ + D + ++L D + + +++ + F + Sbjct: 296 NAGNMNVAPSISPDGKYLAFLSEKDLFGIDLFLADAKTGKIIRKLSSQVANSHIDDFNFL 355 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQI 316 A +S +GK+ S+ + +++ + + L + + S+SP+ I Sbjct: 356 ESAGTWSPDGKQFAFSIFSKGKNQLMIINIDNGSVA-LRADMGDVAQFGNLSWSPNGDDI 414 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------- 369 F +G+ ++ +I+ D S + P +S G IAF+ Sbjct: 415 AFSGMIQGQSDIFSYNLKTKKVTQITNDA-YSDYAPAYSQDGKKIAFSSDRASITKNNNT 473 Query: 370 ---KFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + + + +N +S + L F +DG LY+ +L Sbjct: 474 AVHSINLSIYDIESKTLTDIPVFPGANNLNAQFSGDSKRLFFLSNRDGFR--NLYAYNLA 531 Query: 425 GRNETLIN 432 + Sbjct: 532 DNTVKQLT 539 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 77/235 (32%), Gaps = 19/235 (8%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ ++ A++ + + + A + + +S NG S Sbjct: 360 TWSPDGKQFAFSIFSKGKNQLMIINIDNGSVALRADMGDVAQFGNLSWSPNGDDIAFSGM 419 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE----------GKEQ 327 DI+S +L++ ++TN + + + +YS D +I F SDR Sbjct: 420 IQGQSDIFSYNLKTKKVTQITNDAYSDYAPAYSQDGKKIAFSSDRASITKNNNTAVHSIN 479 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 L + I A+ + +S + F + + + L Sbjct: 480 LSIYDIESKTLTDIPVFPGANNLNAQFSGDSKRLFFLSNRDGFRNLYAYNLADNTVKQLT 539 Query: 388 E------DSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + +P S S +++S + LY+ ++ ++ A Sbjct: 540 DYFTGISGITEFSPAISVSRNDDIVYSYYRSQRYT--LYNSPISSFRSKPVDANA 592 >gi|295087746|emb|CBK69269.1| Periplasmic protease [Bacteroides xylanisolvens XB1A] Length = 1072 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 34/231 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R SP+ ++ + DI +V ++ S P +S +GK+ + Sbjct: 5 RISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSPDGKQIAFASD 58 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKE 326 ++ DI+ + A RLT I ++++PD + F + Sbjct: 59 RNGNFDIFIMPADGGAARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAMT 118 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 +LY + G +++ A + G + S I Sbjct: 119 ELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSITRDIW 175 Query: 375 VMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + P ++P G ++ F ++DG + +Y+ LN Sbjct: 176 LYNTQTGKHTNLTNRGGEDRNPVYAPDGNAVYFLSERDGGS-FNVYTFPLN 225 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 28/203 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +G + + D IY V Q +LT + +SPD QI F SDR Sbjct: 5 RISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEANPVWSPDGKQIAFASDRN 60 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFA 372 G +++M ++G +R++ AS ++P G + F+ +G Sbjct: 61 GNFDIFIMPADGGAARRLTY-HSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAMTE 119 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + G + ++ + + +G++ ++ +K ++ + Sbjct: 120 LYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFEDEWRKHHTSSITRDIWLYN 178 Query: 423 L-NGRNETLINTPAYASDPQWVG 444 G++ L N +P + Sbjct: 179 TQTGKHTNLTNRGGEDRNPVYAP 201 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 98/310 (31%), Gaps = 81/310 (26%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM------- 259 +R P ++P+ V + + D VY + K + F++ Sbjct: 187 LTNRGGEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRFLSV 246 Query: 260 ----------------------------------------------ILAPRFSSNGKRAL 273 + S +GK+ Sbjct: 247 SDKGTLCYTYDGELYTQKSGARPEKVKVELVRDDEQQLATLKFSQGATSASVSPDGKQVA 306 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-- 331 V+ D ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 307 FIVRGD----VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKI 362 Query: 332 ---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + K P +SP G +AF + + V+ + Sbjct: 363 SRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDRN---RLMVLNLKTKK 419 Query: 383 ERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R + + S WSP G+ L F + D S + + G T + Sbjct: 420 VRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGATTNLTNS 478 Query: 435 AYAS-DPQWV 443 Y S P+WV Sbjct: 479 GYISGAPRWV 488 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ D + + K+I N + A F+ + + + + + Sbjct: 297 SVSPDGKQVAFIVRGD------VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASE 350 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 351 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDR--- 407 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + +G++ Sbjct: 408 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSA 467 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + AP W G +++F ++ G Sbjct: 468 QGGATTNLTNSGYISGAPRWVLDGNAILFQTERYG 502 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 81/234 (34%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + +++M Sbjct: 17 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSPDGKQIAFASDRNGN-FDIFIMPAD-GG 73 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK S ++Y V + TE++ Sbjct: 74 AARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAMTELYKVPVAGGRTEQV 133 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ Sbjct: 134 LGTPAELV--CFDKTGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLTNR 190 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV++P G+ + F ++ G F + + QE V + Sbjct: 191 G-GEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRF 243 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 296 ASVSPDGKQVAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 354 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 355 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERAYPQYSPDGKELAFI--- 404 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 405 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 462 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q AT LTN+ +I+ + + D + I+F+++R G Sbjct: 463 GIVSAQGGATTNLTNSGYISGAPRWVLDGNAILFQTERYG 502 >gi|224538045|ref|ZP_03678584.1| hypothetical protein BACCELL_02934 [Bacteroides cellulosilyticus DSM 14838] gi|224520335|gb|EEF89440.1| hypothetical protein BACCELL_02934 [Bacteroides cellulosilyticus DSM 14838] Length = 1066 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 36/231 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++ + DI +V A ++ S P +S +GK+ + + Sbjct: 30 ISPDGTEIVFCY--KGDIYKV----PTEGGAATQLTTQDSYECTPVWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGK--------EQ 327 + DI+ + RLT + A+++PD I+F + D G + Sbjct: 84 NGNFDIFVMPANGGTARRLTTHSTNEVPATFTPDGKYILFSASIQDPAGSALFPSAAMTE 143 Query: 328 LYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEK------------FAIG 374 LY + S G +++ EA FD G+ + G + + Sbjct: 144 LYKVPSVGGRTEQVLGTPAEAVCFDKS----GNRFFYQDRKGGENEWRKHHTSSITRDVW 199 Query: 375 VMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + L + P SP G+++ F +++G + +YS ++ Sbjct: 200 MYDTKTGSHTNLTQHAGEDRNPIVSPDGQTVYFLSERNGGS-FNVYSFPIS 249 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 22/157 (14%) Query: 298 TNTLFINISASY------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 T + + SPD ++IVF K +Y + + G +++ Sbjct: 13 TAITSYATTPLWMRDVQISPDGTEIVFCY----KGDIYKVPTEGGAATQLTTQDSYECT- 67 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKK 410 PVWSP G IAF F I VM +G R L S + P T++P G+ ++FS Sbjct: 68 PVWSPDGKQIAFASDRNGNFDIFVMPANGGTARRLTTHSTNEVPATFTPDGKYILFSASI 127 Query: 411 DGDTGS---------KLYSI-DLNGRNETLINTPAYA 437 GS +LY + + GR E ++ TPA A Sbjct: 128 QDPAGSALFPSAAMTELYKVPSVGGRTEQVLGTPAEA 164 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 35/293 (11%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ------QKVAYAT 230 + F+SE S + +I+ +T + + S + Y Sbjct: 230 VYFLSERNGGSFNVYSFPISQP--QSIKTITSFKTHPVRFLSMSNDGTLCYGYDSEIYTQ 287 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + + ++ + R D+ + + S +GK+ +V+ +++ Sbjct: 288 QEGSNPRKINVEIIRDDQPQIAYLKYPDKATSATVSPDGKQIAFTVRG----EVFVTSAD 343 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM------QSNGSDQKRISQD 344 T+++T+T S++PD+ + + S+R G Q+Y+ N + I ++ Sbjct: 344 YATTKQITHTAAEEDGLSFAPDNRTLAYASERNGNWQIYLAKIVREEDPNFPNATLIKEE 403 Query: 345 -----KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA----- 394 P +SP G +AF + + V+ + + R + + S + Sbjct: 404 VLLPSTTVERSHPQFSPDGKELAFIEDRN---RLMVLNLETKKVRRITDGSTWYSTGGGF 460 Query: 395 -PTWSPSGRS--LIFSRKKDGD-TGSKLYSIDLNGRNETLINTPAYASDPQWV 443 WSP G+ L F K + L S NG L N+ + P +V Sbjct: 461 DYAWSPDGKWFTLEFIGNKHDPYSDIGLVSAQGNGEIVNLTNSGYTSGSPSFV 513 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 81/211 (38%), Gaps = 32/211 (15%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT +D P +SP+ +++A+A+ + + +++M Sbjct: 41 YKGDIYKVPTEGGAATQLTT-QDSYECTPVWSPDGKQIAFASDRNGN-FDIFVMPAN-GG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 +R+ + + F+ +GK L S + ++Y V TE++ Sbjct: 98 TARRLTTHSTNEVPATFTPDGKYILFSASIQDPAGSALFPSAAMTELYKVPSVGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQ-------------LYVMQSNGSDQKRISQD 344 T + + ++ ++ DR+G E +++ + ++Q Sbjct: 158 LGTPAEAV--CFDKSGNRFFYQ-DRKGGENEWRKHHTSSITRDVWMYDTKTGSHTNLTQ- 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIG 374 +P+ SP G + F ++ +G F + Sbjct: 214 HAGEDRNPIVSPDGQTVYFLSERNGGSFNVY 244 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 121/341 (35%), Gaps = 39/341 (11%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ + A ++ + + G+ Sbjct: 320 ATVSPDGKQIAFTVRGEVF-VTSADYATTKQITHTAAEEDGLSFAPDNRTLAYASERNGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + + +L L PS P+FSP+ +++A+ Sbjct: 379 WQIYLAKIVREEDPNFPNATLI-------KEEVLLPSTTVERSHPQFSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKR--ALISVQK-DEAMDI 284 ED R+ +++ + +RI + +S +GK K D DI Sbjct: 429 -EDRNRLMVLNLET-KKVRRITDGSTWYSTGGGFDYAWSPDGKWFTLEFIGNKHDPYSDI 486 Query: 285 YSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQ 332 V Q LTN+ + + S S+ D + I+F ++R G L + Sbjct: 487 GLVSAQGNGEIVNLTNSGYTSGSPSFVLDGNAILFITERYGMRAHASWGSLDDAMLVFLN 546 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQERLLVEDSN 391 + D+ +S++ Y + + IA S + + + + RL SN Sbjct: 547 QDAYDKFSLSKEDYELYKEA--NSDRKKIADKDSSKVKDVVVELKNIEDRIVRLTPNSSN 604 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + + S G++L + +G G L+ +DL + L++ Sbjct: 605 MGSTLISKDGKTLYYLASAEG--GRNLWKMDLRKKETKLLH 643 >gi|285808309|gb|ADC35840.1| peptidase S9 prolyl oligopeptidase [uncultured bacterium 89] Length = 689 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 104/300 (34%), Gaps = 35/300 (11%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 GDF + ++ ++ ++ DG R L R P SP ++VA+ Sbjct: 94 RGGDFERTAEAPNPRSNPEGVEQAVFLIRADGGEPRRLGEGR-----APAVSPKGERVAF 148 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + +++ + P + + R + +S +G R + I D Sbjct: 149 L-----NKGQIWWVAIEGSDKPAQAVHARGNAHSLHWSPDGSRLAFVSDRGNHSFIGVFD 203 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESD------------REGKE-QLYVMQSNG 335 + + L ++ ++ +SPDS Q+ F R G+ + V + Sbjct: 204 PAAKSLRYLDPSVDLDSQPVWSPDSKQVAFIRSAASQDATVFGPKRSGQPWSVRVADAAS 263 Query: 336 SDQKRISQ--DKEASYFDPVWSPQ------GDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +++ + S F V + Q GD++ F + + G L Sbjct: 264 GAGRQVWHAEEGRGSLFHAVVASQQLIWMAGDILVFPWERDGWVHLYSVPLAGGMVTQLT 323 Query: 388 ED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 ++ + SP G+ +++S + ++ + ++G + + + +W M Sbjct: 324 PGEFEVEHVSPSPGGKEVLYSSNQGDIDRRHIWKVAVSGGRPSPVTSGGGI---EWSPVM 380 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 31/211 (14%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP----RFSSNGKRALIS 275 +P VA+ R + + +++ ++ ++ +G+ + Sbjct: 36 APAGGGVAWIVSA--KGARNIWTASPPAYSGRQVTSYTQDDGQEINEITWTPDGRTIVYV 93 Query: 276 VQKDEAMD----------------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 D ++ + RL + SP ++ F Sbjct: 94 RGGDFERTAEAPNPRSNPEGVEQAVFLIRADGGEPRRLGEGRA----PAVSPKGERVAFL 149 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 + K Q++ + GSD+ + + WSP G +AF G IGV Sbjct: 150 N----KGQIWWVAIEGSDKPAQAVHARGNAHSLHWSPDGSRLAFVSDRGNHSFIGVFDPA 205 Query: 380 GSQERLLVEDSNLQA-PTWSPSGRSLIFSRK 409 R L +L + P WSP + + F R Sbjct: 206 AKSLRYLDPSVDLDSQPVWSPDSKQVAFIRS 236 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 34/158 (21%) Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---QDKEASYFDPVWSPQGDLIAFTKF 366 +P + + +G ++ ++++ QD + W+P G I + + Sbjct: 36 APAGGGVAWIVSAKGARNIWTASPPAYSGRQVTSYTQDDGQEINEITWTPDGRTIVYVR- 94 Query: 367 SGEKFA------------------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 G F + +++ DG + R L E AP SP G + F Sbjct: 95 -GGDFERTAEAPNPRSNPEGVEQAVFLIRADGGEPRRLGEGR---APAVSPKGERVAFLN 150 Query: 409 KKDGDTGSKLYSIDLNG--RNETLINTPAYASDPQWVG 444 K +++ + + G + ++ A W Sbjct: 151 K------GQIWWVAIEGSDKPAQAVHARGNAHSLHWSP 182 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 4/133 (3%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-- 280 + + + D ++ + S GK L S + + Sbjct: 294 GDILVFPW--ERDGWVHLYSVPLAGGMVTQLTPGEFEVEHVSPSPGGKEVLYSSNQGDID 351 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 I+ V + +T+ I S + D + F + ++ K Sbjct: 352 RRHIWKVAVSGGRPSPVTSGGGIEWSPVMTSDREAVAFLQSGARRPSHAAIRVGSGPVKE 411 Query: 341 ISQDKEASYFDPV 353 ++ S F Sbjct: 412 LAPQTIPSEFPEA 424 >gi|120611748|ref|YP_971426.1| peptidase S9 prolyl oligopeptidase [Acidovorax citrulli AAC00-1] gi|120590212|gb|ABM33652.1| peptidase S9, prolyl oligopeptidase active site domain protein [Acidovorax citrulli AAC00-1] Length = 661 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 48/236 (20%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 AP + S PR+S +GK+ + + ++ + ++ +S Sbjct: 54 GGAPWPLTGGTSTDNNPRWSPDGKQVAFISMRTGSSQVFVIARHGGEARQVGALDGTALS 113 Query: 307 ASYSPDSSQIV-----------------------------------FESDREGK-----E 326 A +SPD + ++SD G Sbjct: 114 AEWSPDGCSLAVLCTVAVDPELRGRRPGPDAPPPRTGGPRIVWRLPYKSDGLGYVLGQET 173 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGS 381 L+V++ + +R++ D + WSP G IA + G + + ++ DG Sbjct: 174 HLFVLRVSDGQCRRLT-DGAFNVRAAAWSPDGRTIAMVRTRDSDTEGHRTDLWTLRADGG 232 Query: 382 QERLLVED-SNLQAPTWSPSGRSLIFSRKKD-GDTGSKLYSIDLNGRNETLINTPA 435 R L + + + +P WSP GR+++ S +D GD +L+ D G + P+ Sbjct: 233 DARQLTDGLAQVLSPVWSPDGRTIVVSGSRDEGDALVRLWQCDAEGGRVEPLGDPS 288 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 55/279 (19%) Query: 163 YQSITGEKGDFNSRILFVSESVVS---GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 + SI G +G +L + V+ ++SL + +G + PR+ Sbjct: 14 HHSIAGVQGSPTEELLVCTVERVNRAADRSESSLWCVPLEGGAP-WPLTGGTSTDNNPRW 72 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI--SVQ 277 SP+ ++VA+ + + R +++G L+ +S +G + +V Sbjct: 73 SPDGKQVAFISMRTGS--SQVFVIARHGGEARQVGALDGTALSAEWSPDGCSLAVLCTVA 130 Query: 278 KD--------------------------------------EAMDIYSVDLQSNATERLTN 299 D + ++ + + RLT+ Sbjct: 131 VDPELRGRRPGPDAPPPRTGGPRIVWRLPYKSDGLGYVLGQETHLFVLRVSDGQCRRLTD 190 Query: 300 TLFINISASYSPDSSQIVFESDRE-----GKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 F +A++SPD I R+ + L+ ++++G D ++++ D A PVW Sbjct: 191 GAFNVRAAAWSPDGRTIAMVRTRDSDTEGHRTDLWTLRADGGDARQLT-DGLAQVLSPVW 249 Query: 355 SPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 SP G I + E + +G + L + S Sbjct: 250 SPDGRTIVVSGSRDEGDALVRLWQCDAEGGRVEPLGDPS 288 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 46/207 (22%) Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++ V L+ A LT + + +SPD Q+ F S R G Q++V+ +G + +++ Sbjct: 46 SLWCVPLEGGAPWPLTGGTSTDNNPRWSPDGKQVAFISMRTGSSQVFVIARHGGEARQV- 104 Query: 343 QDKEASYFDPVWSPQGDLIAFT----------------------------------KFSG 368 + + WSP G +A K G Sbjct: 105 GALDGTALSAEWSPDGCSLAVLCTVAVDPELRGRRPGPDAPPPRTGGPRIVWRLPYKSDG 164 Query: 369 EKF------AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGS---KL 418 + + V++ Q R L + N++A WSP GR++ R +D DT L Sbjct: 165 LGYVLGQETHLFVLRVSDGQCRRLTDGAFNVRAAAWSPDGRTIAMVRTRDSDTEGHRTDL 224 Query: 419 YSIDLNGRNETLINTP-AYASDPQWVG 444 +++ +G + + A P W Sbjct: 225 WTLRADGGDARQLTDGLAQVLSPVWSP 251 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 14/157 (8%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-----EAMDIYSVDLQSNATERLTNT 300 D +R+ + + A +S +G+ + +D D++++ +LT+ Sbjct: 181 SDGQCRRLTDGAFNVRAAAWSPDGRTIAMVRTRDSDTEGHRTDLWTLRADGGDARQLTDG 240 Query: 301 LFINISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKRISQ-----DKEASYFDP 352 L +S +SPD IV R+ + +L+ + G + + E S Sbjct: 241 LAQVLSPVWSPDGRTIVVSGSRDEGDALVRLWQCDAEGGRVEPLGDPSIEIGTETSSVRF 300 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 V G ++A G A+ + G + R++VED Sbjct: 301 VDGDPGRVLALLMRRG-VHAVASIAVPGGEVRVIVED 336 Score = 45.0 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 7/139 (5%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 D + + + + + L + DG + R LT Q+ P +SP+ + Sbjct: 196 RAAAWSPDGRTIAMVRTRDSDTEGHRTDLWTLRADGGDARQLTDGLAQV-LSPVWSPDGR 254 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS----NGK--RALISVQK 278 + + DE V L + S+ + SS +G R L + + Sbjct: 255 TIVVSGSRDEGDALVRLWQCDAEGGRVEPLGDPSIEIGTETSSVRFVDGDPGRVLALLMR 314 Query: 279 DEAMDIYSVDLQSNATERL 297 + S+ + + Sbjct: 315 RGVHAVASIAVPGGEVRVI 333 >gi|85708709|ref|ZP_01039775.1| Acylaminoacyl-peptidase [Erythrobacter sp. NAP1] gi|85690243|gb|EAQ30246.1| Acylaminoacyl-peptidase [Erythrobacter sp. NAP1] Length = 706 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 99/322 (30%), Gaps = 59/322 (18%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF--EPRFSPNQQKVAYAT---- 230 IL S S + + +R G N R I + +P+ SP+ + Y Sbjct: 20 ILNAQTSEPSSEMSVTGKGSERTGPNSRLTGEDLFDIAYASDPQISPDGSTIIYTRRQSD 79 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + ++ + R+S +G R ++ ++ + Sbjct: 80 IMTDRVVSSLWSIDVASGEERPFAGNDGAAFGARWSPDGSRVAYVSTENGGAQLWVKWMD 139 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFE--------------SDRE------------- 323 S +LT +S ++SPD QI + S+R Sbjct: 140 SGEAVKLTGLPNSPMSITWSPDGRQISYVMMVDDNAPSLGSAPSNRPEGATWADALQITD 199 Query: 324 --------------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 G E+++V+ + G ++++ WS G + FT Sbjct: 200 LVNFRADGAGEITPGFEKIFVISATGGAPRQLTFGPNHDGGALSWSADGTKVFFTSNRNP 259 Query: 370 KFA-------IGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTG---SKL 418 + I + L D P SP G + + D +++ Sbjct: 260 DWQTDPVEADIWSVDTRTLALAQLTMRDGPDGGPLVSPDGSMIAYVGFDDEGRAYEQTEI 319 Query: 419 YSIDLNGRNETLINTPAYASDP 440 Y +D +G N L+ T ++ P Sbjct: 320 YVMDADGSNSRLL-TGSWDFSP 340 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 64/292 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SR+ +VS L V D + +SP+ ++++Y D+ Sbjct: 119 SRVAYVSTENGGA----QLWVKWMD-SGEAVKLTGLPNSPMSITWSPDGRQISYVMMVDD 173 Query: 235 DILRV---------------------------------------YLMDTRIDRAPKRIGN 255 + + + + AP+++ Sbjct: 174 NAPSLGSAPSNRPEGATWADALQITDLVNFRADGAGEITPGFEKIFVISATGGAPRQLTF 233 Query: 256 FRSMILAP-RFSSNGKRALISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISA 307 + +S++G + + ++ DI+SVD ++ A +LT + Sbjct: 234 GPNHDGGALSWSADGTKVFFTSNRNPDWQTDPVEADIWSVDTRTLALAQLTMRDGPDGGP 293 Query: 308 SYSPDSSQIVFES-DREGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD S I + D EG+ ++YVM ++GS+ + ++ + S W + Sbjct: 294 LVSPDGSMIAYVGFDDEGRAYEQTEIYVMDADGSNSRLLTGSWDFSPDAVEWDANSRALY 353 Query: 363 FTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQAP----TWS-PSGRSLIFS 407 + + M DGS ++ V L P ++S ++ F+ Sbjct: 354 VQYDKRGETFVARMSLDGSVRDVVEGVSGGGLDRPYTGGSFSVADNGTIAFT 405 >gi|255015929|ref|ZP_05288055.1| putative Tricorn-like protease [Bacteroides sp. 2_1_7] Length = 1076 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S Q D IY+V +LT + +SPD +I F S+R Sbjct: 30 AISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNRS 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +++M G + KR++ + + + G I + +F G +F Sbjct: 86 GNFDIFLMNKEGGEPKRLTT-HSTNEYPTTFKDNG-HILYLANVLQDAKDIQFPGTRFMQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + DG + L ++ S G L+++ K ++ Sbjct: 144 VYEISTDGGRPD-LYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDIWLCT 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 L + + + +P W Sbjct: 203 LGKDRSFQKVTTFGGEDRNPVWAA 226 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 39/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A++ DI V +++ + P +S +G+R + Sbjct: 30 AISPDGQTIAFSY--QGDIYTV----PSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------FESDREGK 325 + DI+ ++ + +RLT ++ + + F R Sbjct: 84 RSGNFDIFLMNKEGGEPKRLTTHSTNEYPTTFKDNGHILYLANVLQDAKDIQFPGTR--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 Q+Y + ++G R + S G + + S I Sbjct: 142 MQVYEISTDGG---RPDLYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDI 198 Query: 374 GVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + D S +++ + P W+ G S + ++ G ++ DL G +E I Sbjct: 199 WLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSF--NIFKKDLAGNSEKQI 256 Query: 432 NT 433 T Sbjct: 257 TT 258 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 116/305 (38%), Gaps = 46/305 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + + ++G + + +R+LT L +S + Sbjct: 231 FYYLSEEKGSFN-----IFKKDLAGNSEKQITT--HTTHPVRFLTSDNTGTLC---YSYD 280 Query: 223 QQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + Y + + +V + D + + + + I S NGK + Sbjct: 281 GE--IYTVKEGQKPAKVNIQIVADKIENDVIHRLLTDGATDI---AVSPNGKEVAFITRG 335 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +Y ++ T ++TNT + +SPD +V+ ++REG +Y + + Sbjct: 336 D----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDED 391 Query: 339 KRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 K+ + E + F P++SP G+ +AF + + V+ + Q R +++ Sbjct: 392 KQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRTT---LRVINRKTKQVRTVLD 448 Query: 389 DSNLQAPT-------WSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYAS 438 L + + WSP + + G + L D +G L + Sbjct: 449 GKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDG 508 Query: 439 DPQWV 443 D +WV Sbjct: 509 DAKWV 513 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ T D VY+ ++I N FS +G+ + S + Sbjct: 321 AVSPNGKEVAFITRGD-----VYVTSIEY-ETTRQITNTPQQERNIDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTL---------FINIS--ASYSPDSSQIVFESDREGKE 326 ++ IY L + ++ T S YSPD +++ F +R Sbjct: 375 REGTWGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKE-ASYFDPV----WSPQGDL--IAFTKFSG-EKFAIGVMKK 378 L V+ + + K SY D WSP + + G I ++K Sbjct: 432 TLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKA 491 Query: 379 DGSQE-RLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E W G+++I+S + G +Y + +G Sbjct: 492 DGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAGFRSHGSWGAERDVYIMFFDGE 548 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 89/257 (34%), Gaps = 42/257 (16%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR------- 238 G + + DG + S + K+ Y Y ED R Sbjct: 138 GTRFMQVYEISTDGGRPDL---YSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSI 194 Query: 239 ---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++L DR+ +++ F P ++++G ++ + +I+ DL N+ + Sbjct: 195 TRDIWLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEK 254 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---------------- 339 ++T + S ++ + + D ++Y ++ K Sbjct: 255 QITTHTTHPVRFLTSDNTGTLCYSYD----GEIYTVKEGQKPAKVNIQIVADKIENDVIH 310 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+ D D SP G +AF + V + R + + +S Sbjct: 311 RLLTDG---ATDIAVSPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFS 363 Query: 399 PSGRSLIFSRKKDGDTG 415 P GRSL++S +++G G Sbjct: 364 PDGRSLVYSAEREGTWG 380 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF+ I + G + R L ++ P WSP G+ + F+ + Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINT 433 G+ ++ ++ G + T Sbjct: 85 SGNF--DIFLMNKEGGEPKRLTT 105 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 33/230 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + G R LT P +SP+ Q++A+A+ + ++LM+ + Sbjct: 41 SYQGDIYTVPSSGGKARQLTTHPAH-DTRPVWSPDGQRIAFASNRSGN-FDIFLMN-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI----------YSVDLQSNATERL 297 PKR+ + F NG ++ +A DI Y + + Sbjct: 98 GEPKRLTTHSTNEYPTTFKDNGHILYLANVLQDAKDIQFPGTRFMQVYEISTDGGRPDLY 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLY---------------VMQSNGSDQKRIS 342 ++ NI + S D S++++ D +G E + + + S QK + Sbjct: 158 SSLYMENI--ALSKDGSKLLYN-DYKGYEDPWRKHHQSSITRDIWLCTLGKDRSFQKVTT 214 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 E +PVW+ G + F I G+ E+ + + Sbjct: 215 FGGE--DRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEKQITTHTTH 262 Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ +VA+ ++ R K + ++ ++S + Sbjct: 408 SGQTSFQPLYSPDGNEVAFLENRTTLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPD 467 Query: 269 GKRALI---SVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L+ SV DI V LT + + + A + D +++ SDR G Sbjct: 468 SKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAG 527 Query: 325 ---------KEQLYVMQSNGS 336 + +Y+M +G Sbjct: 528 FRSHGSWGAERDVYIMFFDGE 548 >gi|325920630|ref|ZP_08182542.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas gardneri ATCC 19865] gi|325548886|gb|EGD19828.1| periplasmic component of the Tol biopolymer transport system [Xanthomonas gardneri ATCC 19865] Length = 778 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 11/234 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + I Sbjct: 215 RPYQIITAGGGFDLTPSLSPDGAMVAYASLTSDRAGTSILVKTTNNAYPRVLDTPAAGIS 274 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q D + I A R + +S S+SPD + Sbjct: 275 DRLPAWSPDGREIAFSRQAPDGSCRIMIAAANGPAAAREVVRCDGADMLSFSWSPDGRGL 334 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 +F S G ++ + + + S + + P +SP G I F + Sbjct: 335 LFGSMTGAHGAPRIRRLDLETGQWQPLVYSAQPQDFDYAPRYSPDGHWIVFLRNPQLGDL 394 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + G+ ERL ++++++ +W P G +IF R+ D + ++LY +DL R Sbjct: 395 WRIPATGGTAERLTHDNADIRGWSWLPDGSGVIFGRRVDSE--ARLYRLDLRDR 446 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 92/281 (32%), Gaps = 57/281 (20%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALIS 275 P +SP+ +++A++ + R+ + A + + + + +S +G+ L Sbjct: 278 PAWSPDGREIAFSRQAPDGSCRIMIAAANGPAAAREVVRCDGADMLSFSWSPDGRGLLFG 337 Query: 276 VQKD--EAMDIYSVDLQSNATERLTNTL---FINISASYSPDSSQIVFESDREGKEQLYV 330 A I +DL++ + L + + + YSPD IVF + + L+ Sbjct: 338 SMTGAHGAPRIRRLDLETGQWQPLVYSAQPQDFDYAPRYSPDGHWIVFLRNPQ-LGDLWR 396 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK------------ 378 + + G +R++ D A W P G + F + + + + Sbjct: 397 IPATGGTAERLTHD-NADIRGWSWLPDGSGVIFGRRVDSEARLYRLDLRDRSLHDLGVDD 455 Query: 379 ------------------------------DGS--QERLLVEDSNLQAPTWSPSGRSLIF 406 +G + RL P +P GR LIF Sbjct: 456 AQAPDVAHDHLVFVQRKPQFGVYQVIRDPMNGGYIRRRLFPSSGRDDQPMIAPDGRQLIF 515 Query: 407 SRKKDGDTGSKLYSIDLNGR---NETLINTPAYASDPQWVG 444 + + G G + G E L A+D W Sbjct: 516 ASNRSGAYGLWWGDVGKPGSVRLIEGLRPDSRQAAD--WSA 554 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 87/292 (29%), Gaps = 52/292 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 +LF S + G + ++ + + PR+SP+ + + D Sbjct: 334 LLFGSMTGAHGAPRIRRLDLETGQWQPLVYSAQPQDFDYAPRYSPDGHWIVFLRNPQLGD 393 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 + R+ +R+ + + I + +G + + D +Y +DL+ + Sbjct: 394 LWRI----PATGGTAERLTHDNADIRGWSWLPDGSGVIFGRRVDSEARLYRLDLRDRSLH 449 Query: 295 ------------------------------------------ERLTNTLFINISASYSPD 312 RL + + +PD Sbjct: 450 DLGVDDAQAPDVAHDHLVFVQRKPQFGVYQVIRDPMNGGYIRRRLFPSSGRDDQPMIAPD 509 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q++F S+R G L+ R+ + + S WS + + + Sbjct: 510 GRQLIFASNRSGAYGLWWGDVGKPGSVRLIEGLRPDSRQAADWSADSQHVLVSGSDADGH 569 Query: 372 A--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYS 420 A V G RL V P + L+ + +DG T + LY Sbjct: 570 AALFEVTPSSGKVVRLPVPQPRPLQAIHLPDPNQLLVLAAAEDGHTFATLYD 621 Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 3/63 (4%) Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA---YASDPQ 441 + P+ SP G + ++ G+ + N +++TPA P Sbjct: 220 ITAGGGFDLTPSLSPDGAMVAYASLTSDRAGTSILVKTTNNAYPRVLDTPAAGISDRLPA 279 Query: 442 WVG 444 W Sbjct: 280 WSP 282 >gi|332662796|ref|YP_004445584.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] gi|332331610|gb|AEE48711.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] Length = 1069 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 22/197 (11%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 P +++G + S Q D I++V RLT + YSPD +I F Sbjct: 27 HPAINNDGSQIAFSFQGD----IWTVASSGGKATRLTIHEAYEGNPMYSPDGKKIAFSGA 82 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----KFSGEKFAIGVM 376 R G ++VM + G KR++ W+ I F+ + G I + Sbjct: 83 RYGNNDVFVMPAEGGSPKRLTYHSAGDNVAG-WASNSQ-IVFSTNREFRQIGGHPEIYGI 140 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDL-NGR 426 G E L+ D P++SP GR + F G +++ D N + Sbjct: 141 NASGGTESRLL-DIEAYDPSYSPDGRFIALVRGSINPVFREDYKGSANREIWIYDTRNKK 199 Query: 427 NETLINTPAYASDPQWV 443 L P+W Sbjct: 200 YNKLPLFNTNDILPRWG 216 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 36/246 (14%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +L P + + ++A++ DI V R+ + P +S +G Sbjct: 21 SNLLLRHPAINNDGSQIAFSF--QGDIWTV----ASSGGKATRLTIHEAYEGNPMYSPDG 74 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-----EG 324 K+ S + D++ + + + +RLT + A ++ + SQIVF ++R G Sbjct: 75 KKIAFSGARYGNNDVFVMPAEGGSPKRLTYHSAGDNVAGWASN-SQIVFSTNREFRQIGG 133 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----------GEKFAI 373 ++Y + ++G + R+ + +DP +SP G IA + S I Sbjct: 134 HPEIYGINASGGTESRLL---DIEAYDPSYSPDGRFIALVRGSINPVFREDYKGSANREI 190 Query: 374 GVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN------GR 426 + + +L + ++N P W + R+L F + G LY I+LN G Sbjct: 191 WIYDTRNKKYNKLPLFNTNDILPRWG-NNRTLYFLSSEAGT--YNLYRINLNENGQAQGG 247 Query: 427 NETLIN 432 E L Sbjct: 248 PEKLTT 253 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 116/304 (38%), Gaps = 30/304 (9%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 I G+ + SE+ + + +L + LT +D+ + S + Sbjct: 211 ILPRWGNNRTLYFLSSEAGTYNLYRINLNENGQAQGGPEKLTTFKDEAIRHFSISSDGST 270 Query: 226 VAY--------ATYDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKRALISV 276 + + ++ + + DR P+ + + S NGK S+ Sbjct: 271 IVFEKDMNLYLLKAGKGAGTKINVQISADDRFDPEELKTLSTGGSELAISPNGKLMAYSI 330 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR-EGKEQLYVMQSNG 335 + + I D + N + +++ +++ ++ D + +VF SDR +G + Y+++S Sbjct: 331 R--GEVFIKEADKEKNRSVNVSDHPNRDMNPTWLSD-TSLVFCSDRADGNFEFYMLRSAD 387 Query: 336 SDQK-----------RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG--SQ 382 + R++Q KE PV S G IA+++ G+ + + DG S Sbjct: 388 RSEPNPFKSLKHELIRLTQTKE-DESSPVVSSDGKKIAYSRGRGDLI-VADIASDGKLSN 445 Query: 383 ERLLVEDS-NLQAPTWSPSGRSLIFS-RKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 E++LV+ +WSP + L +S + +++ D + + P P Sbjct: 446 EKVLVDGWAGANGVSWSPDNKWLAYSMTDLYFNNEVFIHAADNSKPAVNVTMHPRTDGQP 505 Query: 441 QWVG 444 W Sbjct: 506 FWSA 509 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 22/240 (9%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 D ++ L+ ++ SPN + +AY+ + + D +R+ + + Sbjct: 302 FDPEELKTLSTGGSEL----AISPNGKLMAYS---IRGEVFIKEADKEKNRSVN-VSDHP 353 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-----------RLTNTLFINIS 306 + + P + S+ S + D + Y + + RLT T S Sbjct: 354 NRDMNPTWLSDTSLVFCSDRADGNFEFYMLRSADRSEPNPFKSLKHELIRLTQTKEDESS 413 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S D +I + R + +++ D A WSP +A++ Sbjct: 414 PVVSSDGKKIAYSRGRGDLIVADIASDGKLSNEKVLVDGWAGANGVSWSPDNKWLAYSMT 473 Query: 367 S---GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + I + + P WS G L F +++ + + ++ + L Sbjct: 474 DLYFNNEVFIHAADNSKPAVNVTMHPRTDGQPFWSADGSKLGFISERNNNRNADVWFVWL 533 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 15/287 (5%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR-------YLTPSRDQILFEPRF 219 ++ ++F S+ L DR N + P Sbjct: 357 MNPTWLSDTSLVFCSDRADGNFEFYMLRSADRSEPNPFKSLKHELIRLTQTKEDESSPVV 416 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK- 278 S + +K+AY + D++ + K + + + +S + K S+ Sbjct: 417 SSDGKKIAY-SRGRGDLIVADIASDGKLSNEKVLVDGWAGANGVSWSPDNKWLAYSMTDL 475 Query: 279 --DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSN 334 + + I++ D S +T + +S D S++ F S+R ++ + Sbjct: 476 YFNNEVFIHAAD-NSKPAVNVTMHPRTDGQPFWSADGSKLGFISERNNNRNADVWFVWLK 534 Query: 335 GSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 D +++SQD E + G A K + I ++ + Sbjct: 535 KEDWEKVSQDWLEKDGPAEGAAAPGGARANAKAEPKPVQIDFADIHERVVQVTSFAGDEG 594 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 T S G++ ++ G LYSI +G++ I Sbjct: 595 NVTISKDGQTFFYTGNSSTARGRDLYSIKWDGKDLKEITRGGSNPFG 641 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 95/292 (32%), Gaps = 49/292 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI---LRVYLMDT 244 N + VM +G + + LT ++ N Q V + I +Y ++ Sbjct: 84 YGNNDVFVMPAEGGSPKRLTYHSAGDNVA-GWASNSQIVFSTNREFRQIGGHPEIYGINA 142 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALIS-----------VQKDEAMDIYSVDLQSNA 293 + + P +S +G+ + + +I+ D ++ Sbjct: 143 SGGTESRLL---DIEAYDPSYSPDGRFIALVRGSINPVFREDYKGSANREIWIYDTRNKK 199 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG-----SDQKRISQDKEAS 348 +L +I + ++ + F S G LY + N ++++ K+ + Sbjct: 200 YNKLPLFNTNDILPRWG-NNRTLYFLSSEAGTYNLYRINLNENGQAQGGPEKLTTFKDEA 258 Query: 349 YFDPVWSPQGDLIAFTKF---------SGEKFAIGVM-----KKDGSQERLLVEDSNLQA 394 S G I F K G I V + D + + L + A Sbjct: 259 IRHFSISSDGSTIVFEKDMNLYLLKAGKGAGTKINVQISADDRFDPEELKTLSTGGSELA 318 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT---PAYASDPQWV 443 SP+G+ + +S + +++ + + +N P +P W+ Sbjct: 319 --ISPNGKLMAYSIR------GEVFIKEADKEKNRSVNVSDHPNRDMNPTWL 362 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 77/258 (29%), Gaps = 56/258 (21%) Query: 165 SITGEKGDFNSRILFVSESVVS-GIIKNSLCVMD--RDG--ANIRYLTPSRDQILFEPRF 219 +T K D +S ++ ++ + L V D DG +N + L + Sbjct: 403 RLTQTKEDESSPVVSSDGKKIAYSRGRGDLIVADIASDGKLSNEKVLVDGWAGANGV-SW 461 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + +AY+ D V++ + + P +S++G + +++ Sbjct: 462 SPDNKWLAYSMTDLYFNNEVFIHAADNSKPAVNVTMHPRTDGQPFWSADGSKLGFISERN 521 Query: 280 EA---------------------------------------------MDIYSVDLQSNAT 294 +D Sbjct: 522 NNRNADVWFVWLKKEDWEKVSQDWLEKDGPAEGAAAPGGARANAKAEPKPVQIDFADIHE 581 Query: 295 E--RLTNTLFINISASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 ++T+ + + S D + S LY ++ +G D K I++ + F Sbjct: 582 RVVQVTSFAGDEGNVTISKDGQTFFYTGNSSTARGRDLYSIKWDGKDLKEITRGGS-NPF 640 Query: 351 DPVWSPQGDLIAFTKFSG 368 +G I +T+ G Sbjct: 641 GLQMDREGKYIYYTRQGG 658 >gi|17225204|gb|AAL37298.1|AF323582_1 beta transducin-like protein HET-E2C [Podospora anserina] Length = 1356 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 90/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 980 QRVASGSGDKTIKIWDTASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSDDK----TIKI 1035 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 DT + + + + FS +G+R S D + I+ D S + L Sbjct: 1036 WDTASGTCTQTLEGHGGWVWSVAFSPDGQRVA-SGSIDGTIKIW--DAASGTCTQTLEGH 1092 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ SD + + + + + S + +SP G Sbjct: 1093 GDWVQSVAFSPDGQRVASGSD---DHTIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQR 1149 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + S DG K+ Sbjct: 1150 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA-SGSIDGT--IKI 1203 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + + Sbjct: 1204 WDAASGTCTQTLEGHGGWVHSVAFSP 1229 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D + FSP+ Q+VA + D + + Sbjct: 896 QRVASGSDDKTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDK----TIKI 951 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 DT + + + + FS +G+R S D+ + I+ D S + Sbjct: 952 WDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA-SGSGDKTIKIW--DTASGTCTQTLEGH 1008 Query: 302 FINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 ++ S ++SPD ++ SD + + + + + + + +SP G Sbjct: 1009 GNSVWSVAFSPDGQRVASGSD---DKTIKIWDTASGTCTQTLEGHGGWVWSVAFSPDGQR 1065 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + +SP G+ + D K+ Sbjct: 1066 VASGSIDGT---IKIWDAASGTCTQTLEGHGDWVQSVAFSPDGQRVASGSD---DHTIKI 1119 Query: 419 YSIDLNGRNETLINTPAYASDPQWV 443 + + + T T D W Sbjct: 1120 W----DAASGTCTQTLEGHGDSVWS 1140 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 93/264 (35%), Gaps = 15/264 (5%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 854 QRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVASGSDDK----TIKI 909 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + S +L+ FS +G+R S D+ + I+ D S + L Sbjct: 910 WDAASGTCTQTLEGHGSSVLSVAFSPDGQRVA-SGSGDKTIKIW--DTASGTGTQTLEGH 966 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S G + + + + + + S + +SP G Sbjct: 967 GGSVWSVAFSPDGQRVASGS---GDKTIKIWDTASGTCTQTLEGHGNSVWSVAFSPDGQR 1023 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A + + I + L + + +SP G+ + S DG K++ Sbjct: 1024 VA-SGSDDKTIKIWDTASGTCTQTLEGHGGWVWSVAFSPDGQRVA-SGSIDGT--IKIWD 1079 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 +TL + + Sbjct: 1080 AASGTCTQTLEGHGDWVQSVAFSP 1103 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 19/252 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 1022 QRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVWSVAFSPDGQRVASGSIDG----TIKI 1077 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + FS +G+R S D + I+ D S + L Sbjct: 1078 WDAASGTCTQTLEGHGDWVQSVAFSPDGQRVA-SGSDDHTIKIW--DAASGTCTQTLEGH 1134 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + +SP G Sbjct: 1135 GDSVWSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQR 1191 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + D K+ Sbjct: 1192 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA---SGSSDNTIKI 1245 Query: 419 YSIDLNGRNETL 430 + +TL Sbjct: 1246 WDTASGTCTQTL 1257 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 19/243 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + FSP+ Q+VA + D + + DT + + + + Sbjct: 835 QTLEGHGSSVLSVAFSPDGQRVASGSDDK----TIKIWDTASGTGTQTLEGHGGSVWSVA 890 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDRE 323 FS +G+R S D+ + I+ D S + L +S ++SPD ++ S Sbjct: 891 FSPDGQRVA-SGSDDKTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGS--- 944 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G + + + + + + S + +SP G +A I + Sbjct: 945 GDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA---SGSGDKTIKIWDTASGTC 1001 Query: 384 RLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +E + +SP G+ + D K++ +TL + Sbjct: 1002 TQTLEGHGNSVWSVAFSPDGQRVASGSD---DKTIKIWDTASGTCTQTLEGHGGWVWSVA 1058 Query: 442 WVG 444 + Sbjct: 1059 FSP 1061 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 23/256 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEP--------RFSPNQQKV--AYATYDDED 235 I+ L + RDG R+ R I P F+P + + + Sbjct: 762 GHTIRGRLIAIVRDGY--RFALSYRMIIEKAPLQAYTSALVFAPTDSMIKKIFKKEEPGW 819 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I + +++ + + + S +L+ FS +G+R S D+ + I+ D S Sbjct: 820 ISTISVVEAEWNACTQTLEGHGSSVLSVAFSPDGQRVA-SGSDDKTIKIW--DTASGTGT 876 Query: 296 R-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + L S ++SPD ++ SD + + + + + + +S + Sbjct: 877 QTLEGHGGSVWSVAFSPDGQRVASGSD---DKTIKIWDAASGTCTQTLEGHGSSVLSVAF 933 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G +A + + I + L ++ + +SP G+ + GD Sbjct: 934 SPDGQRVA-SGSGDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA---SGSGDK 989 Query: 415 GSKLYSIDLNGRNETL 430 K++ +TL Sbjct: 990 TIKIWDTASGTCTQTL 1005 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 16/220 (7%) Query: 170 KGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G + + F + V SG I ++ + D + FSP+ Q+VA Sbjct: 1050 HGGWVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGDWVQSVAFSPDGQRVA 1109 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + D + + D + + + + FS +G+R S D + I+ Sbjct: 1110 SGSDDH----TIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQRVA-SGSIDGTIKIW-- 1162 Query: 288 DLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D S + L S ++SPD ++ S + + + + + Sbjct: 1163 DAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHG 1219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +SP G +A I + Sbjct: 1220 GWVHSVAFSPDGQRVASGSSDNT---IKIWDTASGTCTQT 1256 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 26/199 (13%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIG-----KKFFSSPASWRKIA----HTI-----S 159 + + ++WD + + G + SP R + HTI + Sbjct: 1064 QRVASGSIDGTIKIWDAASGTCTQTLEGHGDWVQSVAFSPDGQRVASGSDDHTIKIWDAA 1123 Query: 160 DDIYQSITGEKGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 GD + F + V SG I ++ + D + Sbjct: 1124 SGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSV 1183 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D + + D + + + + FS +G+R S Sbjct: 1184 AFSPDGQRVASGSIDG----TIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA-SGS 1238 Query: 278 KDEAMDIYSVDLQSNATER 296 D + I+ D S + Sbjct: 1239 SDNTIKIW--DTASGTCTQ 1255 >gi|116624109|ref|YP_826265.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227271|gb|ABJ85980.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 880 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 6/230 (2%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 ++P+ ++ + + A + + P S +G+R + Sbjct: 541 WAPDGRRSILSMEPAPGSWAHLYAIDTVTAALQPLTGGTGEEREPAVSPDGRRIAFTSGA 600 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 ++ D+ + L T+ L T S ++SP Q V+ + +++ Sbjct: 601 ED-TDLIEIALDGTKTKTLLATSRPEYSGAWSPSGLQYVYVTSAPDGPAIWMRSLAEGWA 659 Query: 339 KRI---SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQA 394 + S + P +SP G IA+ + +G + A+ V G L E ++ Sbjct: 660 RPFEEGSAEGYLDLSQPRYSPDGQRIAYVR-TGARHAVYVSSTAGGPAVPLERESADQHT 718 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P WSP G + ++R + G+ L + +W Sbjct: 719 PAWSPDGNWIAYTRFVGQNWEITKAPSGGGGQPVRLGIGGDSSGWMEWSP 768 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 95/261 (36%), Gaps = 24/261 (9%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYA---TYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 R P + FS + + + T D + + +++ K + Sbjct: 475 RRPFPGSFRFFDGVSFSADGENLLVTVIETIDVKRGVEAWILPLPDGAPRKLAAPWPPAA 534 Query: 261 LAPR--FSSNGKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ +G+R+++S++ +Y++D + A + LT + SPD +I Sbjct: 535 RPRTMVWAPDGRRSILSMEPAPGSWAHLYAIDTVTAALQPLTGGTGEEREPAVSPDGRRI 594 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F S E + + + +G+ K + Y WSP G + + + AI + Sbjct: 595 AFTSGAEDTDLIEIA-LDGTKTKTLLATSRPEYSG-AWSPSGLQYVYVTSAPDGPAIWMR 652 Query: 377 KKDGSQERLLVEDS-----NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 R E S +L P +SP G+ + + R +Y G + Sbjct: 653 SLAEGWARPFEEGSAEGYLDLSQPRYSPDGQRIAYVRT---GARHAVYVSSTAGGPAVPL 709 Query: 432 -------NTPAYASDPQWVGF 445 +TPA++ D W+ + Sbjct: 710 ERESADQHTPAWSPDGNWIAY 730 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 97/296 (32%), Gaps = 21/296 (7%) Query: 147 SPASWRKIAHTISDDIY----QSITGEKGDFNSRILFVSESV---VSGIIKNSLCVMDRD 199 +P SW AH + D Q +TG G+ + SG L + D Sbjct: 555 APGSW---AHLYAIDTVTAALQPLTGGTGEEREPAVSPDGRRIAFTSGAEDTDLIEIALD 611 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + L + + + +SP+ + Y T + P G+ Sbjct: 612 GTKTKTLLAT-SRPEYSGAWSPSGLQYVYVTSAPDGPAIWMRSLAEGWARPFEEGSAEGY 670 Query: 260 I--LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + PR+S +G+R V+ +Y L + ++SPD + I Sbjct: 671 LDLSQPRYSPDGQRIAY-VRTGARHAVYVSSTAGGPAVPLERESADQHTPAWSPDGNWIA 729 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 + ++ S G Q S WSP G I SG + ++ Sbjct: 730 YTRFVGQNWEITKAPSGGGGQPVRLGIGGDSSGWMEWSPTGAWIGVRDASG----LQLVS 785 Query: 378 KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 +G R + A +S G +L+ R + D +L S+ + E T Sbjct: 786 PEGGAARHVH--GPCAAFAFSKDGNTLLVVR-RSKDQHWELASLGVADGVERKSVT 838 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 24/242 (9%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +P +SP+ Q +AY +D +V+ + ++ + + ++P +S +G R Sbjct: 353 QPAWSPDAQALAYVA-TVDDTPQVFTRSLK-SPLAVQLTHSQRASISPFWSPDGSRVYYW 410 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISA--SYSPDSSQIVFESDREGKEQLYVMQS 333 Q ++SV A + + + + SPD F R Q V Sbjct: 411 SQGS----LWSVGAAGGAPQLVIQDVATPRGPAAAISPDGKTFAF--FRHDGPQFAVFLQ 464 Query: 334 NGSD-----QKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQER 384 +G++ ++R + +S G+ + T ++ R Sbjct: 465 SGTEKAVAYKRRPFPGSFRFFDGVSFSADGENLLVTVIETIDVKRGVEAWILPLPDGAPR 524 Query: 385 LLVEDSNLQAP----TWSPSGRSLIFSRKKDGDTGSKLYSID-LNGRNETLINTPAYASD 439 L A W+P GR I S + + + LY+ID + + L + Sbjct: 525 KLAAPWPPAARPRTMVWAPDGRRSILSMEPAPGSWAHLYAIDTVTAALQPLTGGTGEERE 584 Query: 440 PQ 441 P Sbjct: 585 PA 586 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 29/256 (11%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + P +SP+ +V Y + + V + + R A S Sbjct: 388 LTHSQRASISPFWSPDGSRVYY--WSQGSLWSVGAAGGAPQLVIQDVATPRGP--AAAIS 443 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLT--------NTLFINISASYSPDSSQIVF 318 +GK + D ++V LQS + + + F + S+S D ++ Sbjct: 444 PDGKTFAF-FRHDG--PQFAVFLQSGTEKAVAYKRRPFPGSFRFFD-GVSFSADGENLLV 499 Query: 319 ES----DREGKEQLYVMQSNGSDQKRISQDKEASYFDP--VWSPQGDL--IAFTKFSGEK 370 D + + +++ ++++ + VW+P G ++ G Sbjct: 500 TVIETIDVKRGVEAWILPLPDGAPRKLAAPWPPAARPRTMVWAPDGRRSILSMEPAPGSW 559 Query: 371 FAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNE 428 + + + + L + + P SP GR + F+ G + L I L+G + + Sbjct: 560 AHLYAIDTVTAALQPLTGGTGEEREPAVSPDGRRIAFTS---GAEDTDLIEIALDGTKTK 616 Query: 429 TLINTPAYASDPQWVG 444 TL+ T W Sbjct: 617 TLLATSRPEYSGAWSP 632 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 15/148 (10%) Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 IS+ K Y ++SPD+ + + + + Q++ Sbjct: 328 ISISKGARPQPYIY-------TPFATDAVDESQPAWSPDAQALAYVATVDDTPQVFTRSL 380 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL---VEDS 390 +++ + AS P WSP G + + ++ + G +L+ V Sbjct: 381 KSPLAVQLTHSQRAS-ISPFWSPDGSRVYYWSQG----SLWSVGAAGGAPQLVIQDVATP 435 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 A SP G++ F R L Sbjct: 436 RGPAAAISPDGKTFAFFRHDGPQFAVFL 463 >gi|325299351|ref|YP_004259268.1| peptidase S41 [Bacteroides salanitronis DSM 18170] gi|324318904|gb|ADY36795.1| peptidase S41 [Bacteroides salanitronis DSM 18170] Length = 1080 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 79/230 (34%), Gaps = 34/230 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V R+ S P +S +GK+ + + Sbjct: 30 ISPDGNEIAFCY--KGDIYKVK----ASGGEAVRLTTQPSYESTPVWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGK--------EQ 327 MD++ + Q RLT I ++++PD Q+VF + D G + Sbjct: 84 FGNMDVFIMPSQGGEARRLTFNSASEIPSAFTPDGKQVVFSASIQDPAGSALFPKSAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + + G +I + P G + S + + Sbjct: 144 LYQVPAEGGRTAQII---GTPAEMVCYEPSGKFFLYQDQKGVESEWRKHHTSSITRDVWM 200 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + L + P SP G + F ++DG + +Y L+ Sbjct: 201 YDVAAGKHTNLTNRAGEDRNPVLSPDGTQVYFLSERDGGS-FNVYRFPLD 249 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 113/303 (37%), Gaps = 39/303 (12%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 +Y + G FN ++ V G +R+L+ SR+ L ++ Sbjct: 229 QVYFLSERDGGSFN------VYRFPLDRPQDVQAVTSFKGNPVRFLSVSRNGTLC---YT 279 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + ++ + +V + T + F S +GK+ V+ Sbjct: 280 YDG-ELYTQSLQAGQAKKVPVSLTSDEENIPVSYTFTRGASEATVSPDGKQVAFVVRG-- 336 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK- 339 +++ ++ T+++T+T S+ D+ +V+ S+R+G LY + + ++K Sbjct: 337 --EVFVTSVEYGTTKQITHTPEAEEGVSFGADNRTLVYASERDGISGLYTAKISREEEKN 394 Query: 340 ----------RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + K P +SP G IAF + + + V+ + R + + Sbjct: 395 FPNATLIEEEALLPSKTVERSYPKFSPDGKEIAFIE---GRTRLMVLNLKSKKVRQVTDG 451 Query: 390 SNLQAPT------WSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASD 439 S + + WSP G+ F K + S + + +G++ L N+ + Sbjct: 452 STWYSLSGGFDYQWSPDGKWFALEFIAHKH-EPYSDIGLVCADGKSPIINLTNSGYTSGM 510 Query: 440 PQW 442 P+W Sbjct: 511 PRW 513 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 42/250 (16%) Query: 199 DGANIRYLTPSRDQILFEPRFSPNQQKVA--YATYDDEDILRVYLMDTRIDRAPKRIGNF 256 DG+ L+ D ++SP+ + A + + E + L+ + N Sbjct: 450 DGSTWYSLSGGFDY-----QWSPDGKWFALEFIAHKHEPYSDIGLVCADGKSPIINLTNS 504 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY-SPDSSQ 315 PR++ +G L + ++ + AS+ S D Sbjct: 505 GYTSGMPRWTMDGNALLFTTERYGMRN----------------------HASWGSLDDVM 542 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 +VF +++ ++ + + + QK + +KE S + + Sbjct: 543 MVFL-NQDAYDKFRLSKEDYELQKEL--EKEQEKAGETASKDKKKDKKADAKTDSVKLIT 599 Query: 376 MKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 ++ DG RL S L + S G +L + +G G ++ +DL L+ Sbjct: 600 VEPDGIEDRIVRLTPNSSRLSSAAISKDGETLYYLSAFEG--GFDMWKMDLRKHETKLL- 656 Query: 433 TPAYASDPQW 442 + D +W Sbjct: 657 ---HKMDARW 663 Score = 38.8 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 ++ SP G + F K +Y + +G L P+Y S P W Sbjct: 25 MRDAVISPDGNEIAFCYK------GDIYKVKASGGEAVRLTTQPSYESTPVWSP 72 >gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina] Length = 1356 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 90/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 980 QRVASGSGDKTIKIWDTASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSDDK----TIKI 1035 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 DT + + + + FS +G+R S D + I+ D S + L Sbjct: 1036 WDTASGTCTQTLEGHGGWVWSVAFSPDGQRVA-SGSIDGTIKIW--DAASGTCTQTLEGH 1092 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ SD + + + + + S + +SP G Sbjct: 1093 GDWVQSVAFSPDGQRVASGSD---DHTIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQR 1149 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + S DG K+ Sbjct: 1150 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA-SGSIDGT--IKI 1203 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + + Sbjct: 1204 WDAASGTCTQTLEGHGGWVHSVAFSP 1229 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 93/264 (35%), Gaps = 15/264 (5%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 854 QRVASGSDDKTIKIWDAASGTGTQTLEGHGGSVWSVAFSPDGQRVASGSDDK----TIKI 909 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + S +L+ FS +G+R S D+ + I+ D S + L Sbjct: 910 WDAASGTCTQTLEGHGSSVLSVAFSPDGQRVA-SGSGDKTIKIW--DTASGTGTQTLEGH 966 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S G + + + + + + S + +SP G Sbjct: 967 GGSVWSVAFSPDGQRVASGS---GDKTIKIWDTASGTCTQTLEGHGNSVWSVAFSPDGQR 1023 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A + + I + L + + +SP G+ + S DG K++ Sbjct: 1024 VA-SGSDDKTIKIWDTASGTCTQTLEGHGGWVWSVAFSPDGQRVA-SGSIDGT--IKIWD 1079 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 +TL + + Sbjct: 1080 AASGTCTQTLEGHGDWVQSVAFSP 1103 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D + FSP+ Q+VA + D + + Sbjct: 896 QRVASGSDDKTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDK----TIKI 951 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 DT + + + + FS +G+R S D+ + I+ D S + Sbjct: 952 WDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA-SGSGDKTIKIW--DTASGTCTQTLEGH 1008 Query: 302 FINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 ++ S ++SPD ++ SD + + + + + + + +SP G Sbjct: 1009 GNSVWSVAFSPDGQRVASGSD---DKTIKIWDTASGTCTQTLEGHGGWVWSVAFSPDGQR 1065 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + +SP G+ + D K+ Sbjct: 1066 VASGSIDGT---IKIWDAASGTCTQTLEGHGDWVQSVAFSPDGQRVASGSD---DHTIKI 1119 Query: 419 YSIDLNGRNETLINTPAYASDPQWV 443 + + + T T D W Sbjct: 1120 W----DAASGTCTQTLEGHGDSVWS 1140 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 19/252 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 1022 QRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVWSVAFSPDGQRVASGSIDG----TIKI 1077 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + FS +G+R S D + I+ D S + L Sbjct: 1078 WDAASGTCTQTLEGHGDWVQSVAFSPDGQRVA-SGSDDHTIKIW--DAASGTCTQTLEGH 1134 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + +SP G Sbjct: 1135 GDSVWSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQR 1191 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + D K+ Sbjct: 1192 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA---SGSSDNTIKI 1245 Query: 419 YSIDLNGRNETL 430 + +TL Sbjct: 1246 WDTASGTCTQTL 1257 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 23/256 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEP--------RFSPNQQKV--AYATYDDED 235 I+ L + RDG R+ R I P F+P + + + Sbjct: 762 GHTIRGRLIAIVRDGY--RFALSYRMIIEKAPLQAYTSALVFAPTDSMIKKIFKKEEPGW 819 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I + +++ + + + S +L+ FS +G+R S D+ + I+ D S Sbjct: 820 ISTISVVEAEWNACTQTLEGHGSSVLSVAFSPDGQRVA-SGSDDKTIKIW--DAASGTGT 876 Query: 296 R-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + L S ++SPD ++ SD + + + + + + +S + Sbjct: 877 QTLEGHGGSVWSVAFSPDGQRVASGSD---DKTIKIWDAASGTCTQTLEGHGSSVLSVAF 933 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G +A + + I + L ++ + +SP G+ + GD Sbjct: 934 SPDGQRVA-SGSGDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA---SGSGDK 989 Query: 415 GSKLYSIDLNGRNETL 430 K++ +TL Sbjct: 990 TIKIWDTASGTCTQTL 1005 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 96/303 (31%), Gaps = 51/303 (16%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIG-----KKFFSSPASWRKIA----HTI-----S 159 + + ++WD + + G + SP R + HTI + Sbjct: 1064 QRVASGSIDGTIKIWDAASGTCTQTLEGHGDWVQSVAFSPDGQRVASGSDDHTIKIWDAA 1123 Query: 160 DDIYQSITGEKGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 GD + F + V SG I ++ + D + Sbjct: 1124 SGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSV 1183 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D + + D + + + + FS +G+R S Sbjct: 1184 AFSPDGQRVASGSIDG----TIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA-SGS 1238 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN--- 334 D + I+ D S + N S+ + + + G+ Q+ Sbjct: 1239 SDNTIKIW--DTASGTCTQTLNVGSTATCLSFDYTN---AYINTNIGRIQIATATMESLN 1293 Query: 335 ------------GSDQKRISQDKEASYFDP------VWSPQGDLIAFTKFSGEKFAIGVM 376 G D + I+ + + + P ++ QG I F +SG + I + Sbjct: 1294 QLSSPVCYSYGLGQDYRWITCNNQNVLWLPPEYHTSAFTMQGRKIVFGCYSG-RIIIFLF 1352 Query: 377 KKD 379 +D Sbjct: 1353 SRD 1355 >gi|311745279|ref|ZP_07719064.1| peptidase, S9A/B/C family [Algoriphagus sp. PR1] gi|126577811|gb|EAZ82031.1| peptidase, S9A/B/C family [Algoriphagus sp. PR1] Length = 676 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 114/330 (34%), Gaps = 62/330 (18%) Query: 164 QSITGEKGDFN-SRILFVSE--SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 + +T + S++++V +++ ++L + + DG R LT P +S Sbjct: 35 EYVTNPSISPDGSKVVYVRNFKDIMTDRDYSNLWISNIDGTQNRPLTQGNHN-DVSPVWS 93 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS----- 275 + K+AY + ++ ++++++ + + N + + +S + + + Sbjct: 94 HDGTKIAYRSNQQDEKMKLFVLYLDT-KESVALTNSANPPGSVSWSFDDQELAFTQFVPK 152 Query: 276 -----------------------------------VQKDEAMDIYSVDLQSNATERLTNT 300 K I+++ L + T Sbjct: 153 QKKSLLNIPAKPEGATWNDAPIYIDEMNYRGDGAGYYKSGNQQIFTIGLAGGTARQWTFD 212 Query: 301 LFINISASYSPDSSQIVFESD-------REGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 ++ D ++F ++ G +Y + K ++ + PV Sbjct: 213 DNDYGIPIWTKDGKSLIFSANLHENHDLEPGNSDIYQLDLASGSIKALTS-RFGPDGGPV 271 Query: 354 WSPQGDLIAFTKFSGEKF-----AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIF 406 SP G IA+T F + VM DGS + L D + P W +G+ + F Sbjct: 272 LSPDGTQIAYTGFDDSYQGYQVTNLYVMNLDGSGIKNLTADLDRDAANPQWESNGKGIYF 331 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + GDT K+ + L G+ T++ Sbjct: 332 QYDEFGDT--KIGHVALTGKIRTVVEGLGG 359 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 101/301 (33%), Gaps = 61/301 (20%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGN 255 N+ + + P SP+ KV Y D D +++ + + + + Sbjct: 24 TNLELTDIFNLEYVTNPSISPDGSKVVYVRNFKDIMTDRDYSNLWISNIDGTQN-RPLTQ 82 Query: 256 FRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 ++P +S +G + S Q+DE M ++ + L + + LTN+ S S+S D Sbjct: 83 GNHNDVSPVWSHDGTKIAYRSNQQDEKMKLFVLYLDTKESVALTNSANPPGSVSWSFDDQ 142 Query: 315 QIVFE----------------------------------------SDREGKEQLYVMQSN 334 ++ F + G +Q++ + Sbjct: 143 ELAFTQFVPKQKKSLLNIPAKPEGATWNDAPIYIDEMNYRGDGAGYYKSGNQQIFTIGLA 202 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-------SGEKFAIGVMKKDGSQERLLV 387 G ++ + D + Y P+W+ G + F+ I + + L Sbjct: 203 GGTARQWTFD-DNDYGIPIWTKDGKSLIFSANLHENHDLEPGNSDIYQLDLASGSIKALT 261 Query: 388 EDSN-LQAPTWSPSGRSLIFSR---KKDGDTGSKLYSIDLNGRNETLIN--TPAYASDPQ 441 P SP G + ++ G + LY ++L+G + A++PQ Sbjct: 262 SRFGPDGGPVLSPDGTQIAYTGFDDSYQGYQVTNLYVMNLDGSGIKNLTADLDRDAANPQ 321 Query: 442 W 442 W Sbjct: 322 W 322 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 82/253 (32%), Gaps = 34/253 (13%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIG 254 G ++ D + P ++ + + + ++ +D E + K + Sbjct: 204 GTARQWTFDDNDYGI--PIWTKDGKSLIFSANLHENHDLEPGNSDIYQLDLASGSIKALT 261 Query: 255 NFRSMILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSNATERLTNTLFIN-ISAS 308 + P S +G + S Q + ++Y ++L + + LT L + + Sbjct: 262 SRFGPDGGPVLSPDGTQIAYTGFDDSYQGYQVTNLYVMNLDGSGIKNLTADLDRDAANPQ 321 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNG------SDQKRISQDKEASYFDPVWSPQGDLIA 362 + + I F+ D G ++ + G + + + D S + A Sbjct: 322 WESNGKGIYFQYDEFGDTKIGHVALTGKIRTVVEGLGGLDLGRPYNAGDFSVS-NTNKFA 380 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 +T G + + + + ++ IFS + G+ + Sbjct: 381 YT-LGGADHPADLAVLSDGEVKRITALNDD------------IFSFRNLGEVEEIWWKSS 427 Query: 423 LNG-RNETLINTP 434 +G + + I TP Sbjct: 428 YDGLKIQGWIVTP 440 Score = 38.8 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G +L VM+ DG+ I+ LT D+ P++ N + + + + D ++ Sbjct: 290 GYQVTNLYVMNLDGSGIKNLTADLDRDAANPQWESNGKGIYFQYDEFGDTKIGHV--ALT 347 Query: 247 DRAPKRIGNFRSMIL-----APRFS-SNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + + L A FS SN + ++ + +V L +R+T Sbjct: 348 GKIRTVVEGLGGLDLGRPYNAGDFSVSNTNKFAYTLGGADHPADLAV-LSDGEVKRIT 404 >gi|237722924|ref|ZP_04553405.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447446|gb|EEO53237.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 1119 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGK---- 325 + ++ D++ + A RLT I ++++PD I F + D G Sbjct: 78 AFASDRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYIFFSASIQDPVGSALFP 137 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + G + S Sbjct: 138 TGAMTELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + + P ++P G ++ F ++DG + +Y+ LN Sbjct: 195 TRDIWLYNTQTGKHTNLTNREGEDRNPVYAPDGNAVYFLSERDGGS-FNVYTFPLN 249 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G I F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLTY-HSASEIPSAFTPDGKYIFFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + +G++ ++ +K Sbjct: 126 SIQDPVGSALFPTGAMTELYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNREGEDRNPVYAP 225 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 99/310 (31%), Gaps = 81/310 (26%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM------- 259 +R+ P ++P+ V + + D VY + K + F++ Sbjct: 211 LTNREGEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRFLSV 270 Query: 260 ----------------------------------------------ILAPRFSSNGKRAL 273 + S +GK+ Sbjct: 271 SDKGTLCYTYDGELYTQKSGARPEKVKVELVRDDEQQLATLKFSQGATSASVSPDGKQIA 330 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-- 331 V+ D ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 331 FIVRGD----VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKI 386 Query: 332 ---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + K P +SP G +AF + + V+ + Sbjct: 387 SRKEDPNFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDRN---RLMVLNLKTKK 443 Query: 383 ERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R + + S WSP G+ L F + D S + + G T + Sbjct: 444 VRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGAITNLTNS 502 Query: 435 AYAS-DPQWV 443 Y S P+WV Sbjct: 503 GYISGAPRWV 512 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ D + + K+I N + A F+ + + + + + Sbjct: 321 SVSPDGKQIAFIVRGD------VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + +G++ Sbjct: 432 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + AP W G +++F ++ G Sbjct: 492 QGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 81/234 (34%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK S ++Y V + TE++ Sbjct: 98 AARRLTYHSASEIPSAFTPDGKYIFFSASIQDPVGSALFPTGAMTELYKVPVAGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ + Sbjct: 158 LGTPAELV--CFDKTGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +E +PV++P G+ + F ++ G F + + QE V + Sbjct: 214 REGEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRF 267 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQIAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERTYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 429 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q A LTN+ +I+ + + D + I+F+++R G Sbjct: 487 GIVSAQGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 >gi|103487490|ref|YP_617051.1| peptidase S9, prolyl oligopeptidase active site region [Sphingopyxis alaskensis RB2256] gi|98977567|gb|ABF53718.1| peptidase S9, prolyl oligopeptidase active site region [Sphingopyxis alaskensis RB2256] Length = 720 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 58/279 (20%) Query: 213 ILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 I +P+ SP+ + +AY D + ++L+DT R + +PR+S Sbjct: 70 IAADPQISPDGRHIAYVRRANDIMTDRAVSSIWLIDTATGRET-PLAGQDGPAFSPRWSP 128 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-------- 319 +G R + ++ + RLT S +++PD I + Sbjct: 129 DGSRLAYVSAAGGSAQLWVRWMDGGEAVRLTGLPTSPSSLTWAPDGRSIAYTMLVKDEGA 188 Query: 320 ---------------------------------SDREGKEQLYVMQSNGSDQKRISQDKE 346 G E+++++ + G ++++ Sbjct: 189 RLGSAPANKPEGAKWAEPLDVRTLLTYRADGQGYVEPGFEKIFLIPATGGAPRQLTFGPY 248 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVE-DSNLQAPTWS 398 WS G + F+ ++ I + L + + P S Sbjct: 249 HDGGPLSWSRDGRTLYFSANRQAEWETDPLESEIHALDVASGAIATLTDRNGPDANPLVS 308 Query: 399 PSGRSLIFSRKKDGDTG---SKLYSIDLNGRNETLINTP 434 P GR + + D ++LY ++ +G I Sbjct: 309 PDGRLIAYLGFDDALRAYEQTELYVMNRDGSGRRRIAAN 347 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 51/307 (16%), Positives = 103/307 (33%), Gaps = 62/307 (20%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIR-YLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I +V + + + D A R +D F PR+SP+ ++AY + Sbjct: 82 HIAYVRRANDIMTDRAVSSIWLIDTATGRETPLAGQDGPAFSPRWSPDGSRLAYVSAAGG 141 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV------------------ 276 + R+ + + ++ +G+ ++ Sbjct: 142 SAQ--LWVRWMDGGEAVRLTGLPTSPSSLTWAPDGRSIAYTMLVKDEGARLGSAPANKPE 199 Query: 277 -----------------------QKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPD 312 + I+ + A +LT + + S+S D Sbjct: 200 GAKWAEPLDVRTLLTYRADGQGYVEPGFEKIFLIPATGGAPRQLTFGPYHDGGPLSWSRD 259 Query: 313 SSQIVFESDREG-------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + F ++R+ + +++ + ++ D+ +P+ SP G LIA+ Sbjct: 260 GRTLYFSANRQAEWETDPLESEIHALDVASGAIATLT-DRNGPDANPLVSPDGRLIAYLG 318 Query: 366 FSG-----EKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 F E+ + VM +DGS R + D ++ A W RSL G+T K+ Sbjct: 319 FDDALRAYEQTELYVMNRDGSGRRRIAANWDYSVDAVQWGADSRSLYVQYDDHGET--KV 376 Query: 419 YSIDLNG 425 + L+G Sbjct: 377 ARVTLDG 383 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 57/259 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--- 231 SR+ +VS + S L V DG LT ++P+ + +AY Sbjct: 131 SRLAYVSAAGGSA----QLWVRWMDGGEAVRLTGLPTSPSSL-TWAPDGRSIAYTMLVKD 185 Query: 232 ------------------------------------DDEDILRVYLMDTRIDRAPKRIGN 255 E + AP+++ Sbjct: 186 EGARLGSAPANKPEGAKWAEPLDVRTLLTYRADGQGYVEPGFEKIFLIPATGGAPRQLTF 245 Query: 256 FRSMILAP-RFSSNGKRALISVQKDEAMD-------IYSVDLQSNATERLTNTLFINISA 307 P +S +G+ S + + I+++D+ S A LT+ + + Sbjct: 246 GPYHDGGPLSWSRDGRTLYFSANRQAEWETDPLESEIHALDVASGAIATLTDRNGPDANP 305 Query: 308 SYSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SPD I + + + +LYVM +GS ++RI+ + + S W + Sbjct: 306 LVSPDGRLIAYLGFDDALRAYEQTELYVMNRDGSGRRRIAANWDYSVDAVQWGADSRSLY 365 Query: 363 FTKFSGEKFAIGVMKKDGS 381 + + + DGS Sbjct: 366 VQYDDHGETKVARVTLDGS 384 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 18/134 (13%) Query: 288 DLQSNATERLT----NTLFINISASYSPDSSQIVFES-------DREGKEQLYVMQSNGS 336 ++ R T L I SPD I + DR ++++ + Sbjct: 51 SARTGPERRFTGADLFDLAIAADPQISPDGRHIAYVRRANDIMTDRA-VSSIWLIDTATG 109 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 + ++ ++ F P WSP G +A+ +G + V DG + L +P+ Sbjct: 110 RETPLA-GQDGPAFSPRWSPDGSRLAYVSAAGGSAQLWVRWMDGGEAVRLT--GLPTSPS 166 Query: 397 ---WSPSGRSLIFS 407 W+P GRS+ ++ Sbjct: 167 SLTWAPDGRSIAYT 180 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 10/81 (12%) Query: 374 GVMKKDGSQERLLVEDSNLQ-----APTWSPSGRSLIFSRKKDG----DTGSKLYSID-L 423 V ER P SP GR + + R+ + S ++ ID Sbjct: 48 AVGSARTGPERRFTGADLFDLAIAADPQISPDGRHIAYVRRANDIMTDRAVSSIWLIDTA 107 Query: 424 NGRNETLINTPAYASDPQWVG 444 GR L A P+W Sbjct: 108 TGRETPLAGQDGPAFSPRWSP 128 >gi|297181482|gb|ADI17669.1| dipeptidyl aminopeptidases/acylaminoacyl-peptidases [uncultured gamma proteobacterium HF0130_23I23] Length = 677 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 104/288 (36%), Gaps = 57/288 (19%) Query: 212 QILFEPRFSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKR-IGNFRSMILAPRFSS 267 + +P+ SP+ + + Y +D +R + +ID R + + +PR+S Sbjct: 37 EWASDPQVSPDSKTIVYVRKSHDIMKDEVRSNIWQIKIDGEDHRPLYSELGDSYSPRWSP 96 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-------- 319 N R E+ I+ +S T +T S S+SPD I F Sbjct: 97 NQDRLAFLSNNSESTQIHMYWFKSGETRAITQLPESPSSLSWSPDGKWIAFTMNVKTKSN 156 Query: 320 -------------------------SDREGKE-------QLYVMQSNGSDQKRISQDKEA 347 +G+ ++V+ + G ++++ Sbjct: 157 AIVESREKPDGANWAKKPITVTTTRYQYDGRGIVEPSYRHIFVVPAEGGSARQLTTGNFN 216 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIG--------VMKKDGSQERLLVEDSNLQAPTWSP 399 Y WSP + I F+ + + + V D S +++ + +P SP Sbjct: 217 HYGSLSWSPDSESIFFSAHRSDDWELASSEADIHSVKITDESIDQITDQSGEESSPIVSP 276 Query: 400 SGRSLIFS---RKKDGDTGSKLYSIDLNGRNETLINT--PAYASDPQW 442 +G+ + F+ R+ T +++ +DL G+N +I+ A + W Sbjct: 277 NGKLVAFNLRERRPLAYTPNRIAVMDLEGKNIRVISGDLDGDAENIVW 324 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 114/310 (36%), Gaps = 63/310 (20%) Query: 174 NSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 + I++V S ++ +++++ + DG + R L S + PR+SPNQ ++A+ + Sbjct: 48 SKTIVYVRKSHDIMKDEVRSNIWQIKIDGEDHRPLY-SELGDSYSPRWSPNQDRLAFLSN 106 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------- 277 + E M + I + +S +GK ++ Sbjct: 107 NSESTQ--IHMYWFKSGETRAITQLPESPSSLSWSPDGKWIAFTMNVKTKSNAIVESREK 164 Query: 278 KDEAMD--------------------------IYSVDLQSNATERLTNTLFINI-SASYS 310 D A I+ V + + +LT F + S S+S Sbjct: 165 PDGANWAKKPITVTTTRYQYDGRGIVEPSYRHIFVVPAEGGSARQLTTGNFNHYGSLSWS 224 Query: 311 PDSSQIVFESDREGKEQ-------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 PDS I F + R + ++ ++ +I+ D+ P+ SP G L+AF Sbjct: 225 PDSESIFFSAHRSDDWELASSEADIHSVKITDESIDQIT-DQSGEESSPIVSPNGKLVAF 283 Query: 364 TKFSGEKF-----AIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 I VM +G R++ D + + W+ +S+ F+ + G Sbjct: 284 NLRERRPLAYTPNRIAVMDLEGKNIRVISGDLDGDAENIVWAEDNQSIYFTYDERG--VR 341 Query: 417 KLYSIDLNGR 426 K+ I L G+ Sbjct: 342 KIGEITLTGK 351 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 89/258 (34%), Gaps = 35/258 (13%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 DGAN + + R+ + + + +Y ++++ A + Sbjct: 165 PDGANW----AKKPITVTTTRYQYDGRGIVEPSYRH-----IFVVPAEGGSARQLTTGNF 215 Query: 258 SMILAPRFSSNGKRALISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISASYS 310 + + +S + + S + + DI+SV + + +++T+ S S Sbjct: 216 NHYGSLSWSPDSESIFFSAHRSDDWELASSEADIHSVKITDESIDQITDQSGEESSPIVS 275 Query: 311 PDSSQIVFESDREGKE------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 P+ + F RE + ++ VM G + + IS D + + VW+ I FT Sbjct: 276 PNGKLVAFN-LRERRPLAYTPNRIAVMDLEGKNIRVISGDLDGDAENIVWAEDNQSIYFT 334 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRS------LIFSRKKDGDTGS 416 IG + G + + P S G + F+ + D + Sbjct: 335 YDERGVRKIGEITLTGKLSEAATSIGGTTIGRPYIS--GGFHVAKNTIAFTYGQS-DRPA 391 Query: 417 KLYSIDLNGRNETLINTP 434 L + NG+ + L Sbjct: 392 DLAIM-QNGKFKLLTGLN 408 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 350 FDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGR 402 DP SP I + + S + + I +K DG R L E + +P WSP+ Sbjct: 40 SDPQVSPDSKTIVYVRKSHDIMKDEVRSNIWQIKIDGEDHRPLYSELGDSYSPRWSPNQD 99 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTP------AYASDPQWVGF 445 L F T +Y +G + P +++ D +W+ F Sbjct: 100 RLAFLSNNSESTQIHMYWFK-SGETRAITQLPESPSSLSWSPDGKWIAF 147 >gi|311029453|ref|ZP_07707543.1| peptidase S9 prolyl oligopeptidase active site domain protein [Bacillus sp. m3-13] Length = 663 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 49/241 (20%) Query: 214 LFEPRFSPNQQKVAYAT---YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + +P++ + +K A+ +++E+ R + ++ + + +PR+S +G Sbjct: 17 ITDPQWDKHSRKYAFVQTTVHEEENEYRSTIYVGDLEGNAVPFTSGKGRATSPRWSPDGS 76 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE----------- 319 + ++E +Y + + E++T +SP ++++F Sbjct: 77 KLAFVSNRNEKSQLYVMPVNGGEAEQVTFCKNGARGPVWSPCGTKLLFSTSVESAEDLHS 136 Query: 320 ----------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDP 352 SD +G + L ++ + ++ + + Y Sbjct: 137 TSSTSEEKKKPEPLVVEKMRYKSDAKGFLDNKNDHLALLDLKTKEVSLLT-EGDRDYGSA 195 Query: 353 VWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLI 405 WSP G IAF E + VM ++ + ++SP G+ L Sbjct: 196 AWSPDGTKIAFVANLEENPDVSLVSDVYVMDVQSKEKNKITHSNGFFSTISFSPDGQYLG 255 Query: 406 F 406 F Sbjct: 256 F 256 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 53/280 (18%) Query: 165 SITGEKGDFNSRI-LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 SIT + D +SR FV +V + + D S PR+SP+ Sbjct: 16 SITDPQWDKHSRKYAFVQTTVHEEENEYRSTIYVGDLEGNAVPFTSGKGRATSPRWSPDG 75 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 K+A+ + +E ++Y+M +++ ++ P +S G + L S + A D Sbjct: 76 SKLAFVSNRNEKS-QLYVMPVN-GGEAEQVTFCKNGARGPVWSPCGTKLLFSTSVESAED 133 Query: 284 IYS--------------------------------------VDLQSNATERLTNTLFINI 305 ++S +DL++ LT Sbjct: 134 LHSTSSTSEEKKKPEPLVVEKMRYKSDAKGFLDNKNDHLALLDLKTKEVSLLTEGDRDYG 193 Query: 306 SASYSPDSSQIVFESDREGKE------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 SA++SPD ++I F ++ E +YVM ++ +I+ + +SP G Sbjct: 194 SAAWSPDGTKIAFVANLEENPDVSLVSDVYVMDVQSKEKNKITH-SNGFFSTISFSPDGQ 252 Query: 360 LIAFTK-----FSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 + F S + V + + L E+ +++ Sbjct: 253 YLGFLGHEKEFQSATLTRVWVTQLATGETHCLTENLDVEV 292 >gi|302806842|ref|XP_002985152.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii] gi|300146980|gb|EFJ13646.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii] Length = 669 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 70/415 (16%), Positives = 122/415 (29%), Gaps = 78/415 (18%) Query: 82 ISQDSFKQKI--TNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 + Q + P + F S + +V R L+D+ Sbjct: 245 LDAAKIDQAVERVTPPGVHAFTPAASRTSNWIVVATHRSNTTSR---HIELFDLSKG--- 298 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR---ILFVSESVVSGIIKNSLCVM 196 F H + + + G R + + V+ N + ++ Sbjct: 299 ---SFLPVTLELHPELHHFNPFVSATSDTLIGYHRCRNDGSIVPTLEHVACPANNDITLV 355 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 DGA P S + +AY T + V + + + Sbjct: 356 RIDGA--------------FPSISSDGALIAYNTDFEASDSGVMVAKLDGSNRKRILT-- 399 Query: 257 RSMILAPRFSSNGKRALISV----QKDEAMDIYSVDLQSNATERLTNTLF---------- 302 + ++ + + +E ++ V L + L + Sbjct: 400 -GLAFTTCWNPCKPGTIYTSVGHIFAEERAMVHIVSL-TFDVTALEDHSSSSSSTLESSV 457 Query: 303 ---------INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-- 351 N S SPD +VF S R G + LY+M + + I E + D Sbjct: 458 KVLSKPGTNNNAFPSCSPDGKNLVFRSGRSGHKNLYIMDAELGEDGGIRALTEGPWVDTM 517 Query: 352 PVWSPQGDLIAFTKFSGEK----FAIGVMKKDGSQERLL----VEDSNLQAPTWSPSGRS 403 P WSP G+ IAF+ FAI ++ DGS+ + +SP ++ Sbjct: 518 PCWSPDGNWIAFSSSRDGPSNEFFAIYLVHPDGSELHRVFPESSTRGRCNHVCFSPDSQT 577 Query: 404 LIFSRKKDG------------DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVGF 445 L+F+ G +L+S L+G AY P W Sbjct: 578 LLFTADCGGISAEPVSLANQFQPYGELFSCKLDGSELRRWTHNAYEDGTPCWGPL 632 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 38/211 (18%) Query: 269 GKRALISV--QKDEAMDIYSVDLQSNATERLTNTLFINISASY---SPDSSQIVFESDRE 323 G + + + A D +++D+ + E LT+ + +N +A + P S ++F S+R Sbjct: 6 GGTVVFASVGRSHYAFDAFALDIATLKEEVLTDGVSVNFNAQFVEDDPKPSAVIFVSERT 65 Query: 324 GKEQLYVMQS---------NGSDQKRISQDKEASYFDPVWSP---QGDLIAFTK------ 365 G +++ + + S ++ F P G I F Sbjct: 66 GASNIFLRRQSLTSKSDRDDHSSTLKLGSLDAGDGFLYCDRPCVAGGGRIIFASTKSSPE 125 Query: 366 -----FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + G RL E +P SPS + + + +++ Sbjct: 126 ISQNLRQPSTAIFSACLRIGLTRRLTPEGVADYSPALSPSKKWIAVASNAGKPWSGEIHE 185 Query: 421 IDL--------NGRNETLINTPAYASDPQWV 443 ++ +G + ++ P W Sbjct: 186 LETSLWIFKAEDGSSRKMVVERG--GWPTWS 214 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 92/248 (37%), Gaps = 31/248 (12%) Query: 214 LFEPRFSPNQQKVAYATYDDEDIL-RVYLMDTRIDRAPKRIGNFRSMILA----PRFSSN 268 + P SP+++ +A A+ + ++ ++T + G+ R M++ P +S + Sbjct: 157 DYSPALSPSKKWIAVASNAGKPWSGEIHELETSLWIFKAEDGSSRKMVVERGGWPTWS-D 215 Query: 269 GKRALISVQ--KDEAMDIYSV-------DLQ----SNATERLTNTLFINISASYSPDSSQ 315 + + +D+ IY DL A ER+T + + S S+ Sbjct: 216 ERTIFFHKRSPEDDWWSIYKAVLPESLEDLDAAKIDQAVERVTPPGVHAFTPAASRTSNW 275 Query: 316 IVFESDREGK--EQLYVMQSNGSDQKRISQD--KEASYFDPVWSPQGD-LIAFTKFSGEK 370 IV + R + + + ++ + E +F+P S D LI + + + Sbjct: 276 IVVATHRSNTTSRHIELFDLSKGSFLPVTLELHPELHHFNPFVSATSDTLIGYHRCRNDG 335 Query: 371 FAI----GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + V + L+ D P+ S G + ++ + + S + L+G Sbjct: 336 SIVPTLEHVACPANNDITLVRIDGAF--PSISSDGALIAYNTDFEA-SDSGVMVAKLDGS 392 Query: 427 NETLINTP 434 N I T Sbjct: 393 NRKRILTG 400 >gi|51892044|ref|YP_074735.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] gi|51855733|dbj|BAD39891.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] Length = 717 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 94/303 (31%), Gaps = 90/303 (29%) Query: 219 FSPNQQKVAYATYDDEDILRVY---LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 SP+ +VAY + + Y + R P R PR+S +G+ + Sbjct: 23 ISPDGTRVAYVLQEIDKKKNEYTSSIWLAREGSPPVRFTAGPR-DTQPRWSPDGRHLVFV 81 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-------------- 321 + + ++ + ++ ++T + +SPD I F ++ Sbjct: 82 SNRSGSNQLWLLSMEGGEARQITRIKGGVQNPVWSPDGRTIAFTANLTEAGIQPEGGDED 141 Query: 322 ---------------------REG-------KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +G ++ + V+ +G + ++++ + ++ D Sbjct: 142 DQDLYRKYTKDVRVITRLHYKMDGVGFYTDERKHICVVDVDGGEPRQLTF-GDFNHLDVS 200 Query: 354 WSPQGDLIAFT--KFSGEKFAIGVMKK-------DGSQ---------------------- 382 W+P G + F + + G + DG Sbjct: 201 WTPDGRGLVFAANRREDRDWYPGHVDLWYLSLSDDGQGQRSSAYTPPEGPGPDRCEAAEE 260 Query: 383 -------ERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTG---SKLYSIDLNGRNETL 430 RL D +P+ SP GR + F ++G + LY +D + Sbjct: 261 TQGNCMPVRLTPGDGTLACSSPSASPDGRMIAFLASDPAESGYGLTGLYVLDRSSGEIRQ 320 Query: 431 INT 433 + T Sbjct: 321 LAT 323 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 108/351 (30%), Gaps = 109/351 (31%) Query: 175 SRILFVSESVVSGIIKNS--LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 +R+ +V + + + + + + +R+ RD +PR+SP+ + + + + Sbjct: 28 TRVAYVLQEIDKKKNEYTSSIWLAREGSPPVRFTAGPRD---TQPRWSPDGRHLVFVSNR 84 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--------------- 277 + + ++I + + P +S +G+ + Sbjct: 85 SGS--NQLWLLSMEGGEARQITRIKGGVQNPVWSPDGRTIAFTANLTEAGIQPEGGDEDD 142 Query: 278 ---------------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 DE I VD+ +LT F ++ S++ Sbjct: 143 QDLYRKYTKDVRVITRLHYKMDGVGFYTDERKHICVVDVDGGEPRQLTFGDFNHLDVSWT 202 Query: 311 PDSSQIVFESDR-------EGKEQLYVMQS--NGSDQK---------------------- 339 PD +VF ++R G L+ + +G Q+ Sbjct: 203 PDGRGLVFAANRREDRDWYPGHVDLWYLSLSDDGQGQRSSAYTPPEGPGPDRCEAAEETQ 262 Query: 340 ------RISQ-DKEASYFDPVWSPQGDLIAFTKFSG-----EKFAIGVMKKDGSQERLLV 387 R++ D + P SP G +IAF + V+ + + R L Sbjct: 263 GNCMPVRLTPGDGTLACSSPSASPDGRMIAFLASDPAESGYGLTGLYVLDRSSGEIRQLA 322 Query: 388 ED----------SNLQAPT-----WSPSGRSLIFSRKKDGDTGSKLYSIDL 423 D +L P+ WSP R + + G +L +D Sbjct: 323 TDLDRPFGNETTGDLVPPSGGRLHWSPDARWIYATVSDGGQV--QLVRVDA 371 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 119/383 (31%), Gaps = 110/383 (28%) Query: 118 KEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR- 176 + D RV + L ++ +K ++ SS R+ + + T + + R Sbjct: 22 QISPDGTRVAYVLQEIDKKK----NEYTSSIWLAREGSPPVRFTAGPRDTQPRWSPDGRH 77 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY----- 231 ++FVS S N L ++ +G R +T + + P +SP+ + +A+ Sbjct: 78 LVFVSNRSGS----NQLWLLSMEGGEARQITRIKGGV-QNPVWSPDGRTIAFTANLTEAG 132 Query: 232 --------DDEDILRVYLMDTRI---------------------------DRAPKRIGNF 256 DD+D+ R Y D R+ P+++ Sbjct: 133 IQPEGGDEDDQDLYRKYTKDVRVITRLHYKMDGVGFYTDERKHICVVDVDGGEPRQLTFG 192 Query: 257 RSMILAPRFSSNGKRALISVQK-------DEAMDIYSVDL--QSNATE------------ 295 L ++ +G+ + + + +D++ + L Sbjct: 193 DFNHLDVSWTPDGRGLVFAANRREDRDWYPGHVDLWYLSLSDDGQGQRSSAYTPPEGPGP 252 Query: 296 ----------------RLTNTLFI--NISASYSPDSSQIVF-ESDRE----GKEQLYVMQ 332 RLT S S SPD I F SD G LYV+ Sbjct: 253 DRCEAAEETQGNCMPVRLTPGDGTLACSSPSASPDGRMIAFLASDPAESGYGLTGLYVLD 312 Query: 333 SNGSDQKRISQDKEASYFDP-------------VWSPQGDLIAFTKFSGEKFAIGVMKKD 379 + + ++++ D + + + WSP I T G + + + Sbjct: 313 RSSGEIRQLATDLDRPFGNETTGDLVPPSGGRLHWSPDARWIYATVSDGGQVQLVRVDAV 372 Query: 380 GSQERLLVEDSNLQAPTWS--PS 400 + + + +S P Sbjct: 373 TGEVWPVT-GGDRVVYAFSLTPD 394 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 10/102 (9%) Query: 350 FDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 D SP G +A+ K + +I + + +GS P WSP GR Sbjct: 19 GDCQISPDGTRVAYVLQEIDKKKNEYTSSIWLAR-EGSPPVRFTAGPRDTQPRWSPDGRH 77 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVG 444 L+F + G +L+ + + G I +P W Sbjct: 78 LVFVSNRSGSN--QLWLLSMEGGEARQITRIKGGVQNPVWSP 117 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 17/132 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDD----EDILRVYLMDTRIDRAPKRIGNFR- 257 +R P SP+ + +A+ D + +Y++D + + Sbjct: 268 VRLTPGDGTLACSSPSASPDGRMIAFLASDPAESGYGLTGLYVLDRSSGEIRQLATDLDR 327 Query: 258 -------SMILAPR-----FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 ++ P +S + + +V + + VD + +T + Sbjct: 328 PFGNETTGDLVPPSGGRLHWSPDARWIYATVSDGGQVQLVRVDAVTGEVWPVTGGDRVVY 387 Query: 306 SASYSPDSSQIV 317 + S +PD + Sbjct: 388 AFSLTPDCCRAA 399 >gi|226227728|ref|YP_002761834.1| tricorn protease [Gemmatimonas aurantiaca T-27] gi|226090919|dbj|BAH39364.1| tricorn protease [Gemmatimonas aurantiaca T-27] Length = 1113 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 32/243 (13%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S ++L P S Q +A+A ++ + R A +R+ +F+ + P+ S Sbjct: 30 QSGTRMLRSPSVSA--QSIAFAYANN------IWVVERAGGAARRLTSFQGVTQNPKLSP 81 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----- 322 +G++ S + D+Y V ++ RLT ++ ++PD +VF S R Sbjct: 82 DGRQVAFSAEYAGNTDVYVVPVEGGQPTRLTWHPSADVVQGWTPDGKSVVFASPRATWAP 141 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKF 371 G + + + G + + F S G +A+ G+ Sbjct: 142 SGAPRFWTVPVGGGVE---TAMPMPRAFQGKISTDGKRVAYRMPSSWDEERRNYRGGQNK 198 Query: 372 AIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 I ++ S P W G ++ F +DG S ++S D GR Sbjct: 199 PIWILDLASFALDTTPFSGSKEMDPVWV--GDAVYFLSDRDG--VSNVWSYDTKGRALKQ 254 Query: 431 INT 433 I T Sbjct: 255 ITT 257 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 16/187 (8%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDR 322 S+ GKRA + + +++++ + LTN+ I+ +SPD I + SDR Sbjct: 320 TLSATGKRAAVEARG----EVFTIPAEKGDVRNLTNSSASAEIAPIWSPDGKSIAWFSDR 375 Query: 323 EGKEQLYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 G+ QL + G R I + + + P WSP G IAF F I ++ Sbjct: 376 SGEYQLVIAPQEGVGATREIVLPEPSRPYSPSWSPDGKTIAF---QDTHFRIWLVDVASG 432 Query: 382 QERLLVEDSNLQA-----PTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPA 435 + ++ D P WSP R L + K+ ++ ++ G + L + A Sbjct: 433 KAKVADTDPYFMMDRSIVPVWSPDSRCLAYP-KRLKSLLRAIFVYEVETGAVKQLTDGMA 491 Query: 436 YASDPQW 442 AS+P W Sbjct: 492 DASNPAW 498 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 10/200 (5%) Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER- 296 V+ + + S +AP +S +GK + + + R Sbjct: 335 EVFTIPAEKGDVRNLTNSSASAEIAPIWSPDGKSIAWFSDRSGEYQLVIAPQEGVGATRE 394 Query: 297 -LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE---ASYFDP 352 + S S+SPD I F+ + +++++ K D P Sbjct: 395 IVLPEPSRPYSPSWSPDGKTIAFQ---DTHFRIWLVDVASGKAKVADTDPYFMMDRSIVP 451 Query: 353 VWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK 410 VWSP +A+ K I V + + + L + ++ P W SG+ L F Sbjct: 452 VWSPDSRCLAYPKRLKSLLRAIFVYEVETGAVKQLTDGMADASNPAWDASGKYLWFLAST 511 Query: 411 DGDTGSKLYSIDLNGRNETL 430 + S L + R ET Sbjct: 512 NFGLNSSLLDMSKFDRPETR 531 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 83/261 (31%), Gaps = 17/261 (6%) Query: 132 DVKDRKQIIGKKFFSSPASWRKIAHTISD--------DIYQSITGEKGDFNSRILFVSES 183 D + + + R H I + + L + Sbjct: 267 DASGNSVVFEQAGYVHELDARAGTHKIVNISAAGDFPWMMPQWKDVTARATGLTLSATGK 326 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 + + + + + ++R LT S P +SP+ + +A+ + + V Sbjct: 327 RAAVEARGEVFTIPAEKGDVRNLTNSSASAEIAPIWSPDGKSIAWFSDRSGEYQLVIAPQ 386 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + + S +P +S +GK +D I+ VD+ S + + Sbjct: 387 EGVGATREIVLPEPSRPYSPSWSPDGKTIAF---QDTHFRIWLVDVASGKAKVADTDPYF 443 Query: 304 NIS----ASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + +SPDS + + + ++V + K+++ D A +P W G Sbjct: 444 MMDRSIVPVWSPDSRCLAYPKRLKSLLRAIFVYEVETGAVKQLT-DGMADASNPAWDASG 502 Query: 359 DLIAFTKFSGEKFAIGVMKKD 379 + F + ++ Sbjct: 503 KYLWFLASTNFGLNSSLLDMS 523 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 119/365 (32%), Gaps = 91/365 (24%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R H +D + G D S + + + + G T Sbjct: 110 RLTWHPSADVV----QGWTPDGKSVVFASPRATWAPSGAPRFWTVPVGGG---VETAMPM 162 Query: 212 QILFEPRFSPNQQKVAYAT----------YDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 F+ + S + ++VAY Y ++++D + S + Sbjct: 163 PRAFQGKISTDGKRVAYRMPSSWDEERRNYRGGQNKPIWILDLASFALDTTPFSG-SKEM 221 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI---------------- 305 P + G +D +++S D + A +++T ++ Sbjct: 222 DPVW--VGDAVYFLSDRDGVSNVWSYDTKGRALKQITTFKDFDVKTLDASGNSVVFEQAG 279 Query: 306 --------------------------SASY------------SPDSSQIVFESDREGKEQ 327 + S + E+ + + Sbjct: 280 YVHELDARAGTHKIVNISAAGDFPWMMPQWKDVTARATGLTLSATGKRAAVEA----RGE 335 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG---SQER 384 ++ + + D + ++ ++ P+WSP G IA+ ++ + + ++G ++E Sbjct: 336 VFTIPAEKGDVRNLTNSSASAEIAPIWSPDGKSIAWFSDRSGEYQLVIAPQEGVGATREI 395 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASD---- 439 +L E S +P+WSP G+++ F DT +++ +D+ +G+ + P + D Sbjct: 396 VLPEPSRPYSPSWSPDGKTIAFQ-----DTHFRIWLVDVASGKAKVADTDPYFMMDRSIV 450 Query: 440 PQWVG 444 P W Sbjct: 451 PVWSP 455 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 105/296 (35%), Gaps = 34/296 (11%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 + + G R VS ++ N++ V++R G R LT S + P+ SP+ ++V Sbjct: 28 SAQSGTRMLRSPSVSAQSIAFAYANNIWVVERAGGAARRLT-SFQGVTQNPKLSPDGRQV 86 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-----DEA 281 A++ + VY++ P R+ S + ++ +GK + + + A Sbjct: 87 AFSAEYAGNT-DVYVVPVE-GGQPTRLTWHPSADVVQGWTPDGKSVVFASPRATWAPSGA 144 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF----------ESDREGKEQ-LYV 330 ++V + + S D ++ + + R G+ + +++ Sbjct: 145 PRFWTVPVGGGVETAMPMPRAFQ--GKISTDGKRVAYRMPSSWDEERRNYRGGQNKPIWI 202 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + S + + DPVW GD + F + G + + Sbjct: 203 LDLA-SFALDTTPFSGSKEMDPVWV--GDAVYFLSDRDGVSNVWSYDTKGRALKQITTFK 259 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA----SDPQW 442 + T SG S++F + ++ +D ++N A PQW Sbjct: 260 DFDVKTLDASGNSVVF------EQAGYVHELDARAGTHKIVNISAAGDFPWMMPQW 309 >gi|156742232|ref|YP_001432361.1| WD40 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156233560|gb|ABU58343.1| WD40 domain protein beta Propeller [Roseiflexus castenholzii DSM 13941] Length = 348 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 88/258 (34%), Gaps = 36/258 (13%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI----------- 260 P +SP+ ++ + D + AP R+ + S Sbjct: 81 GAASHPAWSPDGARIVFVQRD--QSFSDLMALPLDGGAPLRLTDNGSNQPRNSFERIRES 138 Query: 261 ---LAPRFSSNGKRALISVQ---------KDEAMDIYSVDLQSNATERLT--NTLFINIS 306 P F+ +G+ + Q + + ++S+ Q+ RL + Sbjct: 139 IWAFYPSFAPDGQTIAFASQYAPPSGAPAAEYHLALFSMPAQAGGARRLIYADDAGHVGR 198 Query: 307 ASYSPDSSQIVFE---SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +++PD S IVF + G Q+ SY DP +SP G +AF Sbjct: 199 VTHAPDGSAIVFVLEPATTGGVSQILRYDRATGAVTPQPGIPPQSY-DPAFSPDGRWLAF 257 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G++ I + G L +AP +SP GR + F + G L+ DL Sbjct: 258 AGRDGDRTDIFAIPTAGGTIVRLTSIGTARAPAFSPDGRMIAFLAVAPAEIGFDLWVADL 317 Query: 424 NGRNETLINTPAYASDPQ 441 +I AS P+ Sbjct: 318 -----RMIGDSLQASTPR 330 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 33/230 (14%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ-------------ILFEPRFSPN 222 RI+FV + L + DG LT + F P F+P+ Sbjct: 94 RIVFVQ----RDQSFSDLMALPLDGGAPLRLTDNGSNQPRNSFERIRESIWAFYPSFAPD 149 Query: 223 QQKVAYATYDDEDI--------LRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRAL 273 Q +A+A+ L ++ M + A + I + + + +G + Sbjct: 150 GQTIAFASQYAPPSGAPAAEYHLALFSMPAQAGGARRLIYADDAGHVGRVTHAPDGSAIV 209 Query: 274 ISVQK---DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 ++ I D + A + ++SPD + F + ++ Sbjct: 210 FVLEPATTGGVSQILRYDRATGAVTPQPGIPPQSYDPAFSPDGRWLAFAGRDGDRTDIFA 269 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKK 378 + + G R++ A P +SP G +IAF + F + V Sbjct: 270 IPTAGGTIVRLTSIGTA--RAPAFSPDGRMIAFLAVAPAEIGFDLWVADL 317 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 40/208 (19%) Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R L + +D + ++ + RL ++SPD ++IVF + L Sbjct: 57 RLLFA--RDGNVWLWQ-----DQAGRLLTGAGAASHPAWSPDGARIVFVQRDQSFSDLMA 109 Query: 331 MQSNGSDQKRISQDKEA-------------SYFDPVWSPQGDLIAFTKF-------SGEK 370 + +G R++ + F P ++P G IAF + Sbjct: 110 LPLDGGAPLRLTDNGSNQPRNSFERIRESIWAFYPSFAPDGQTIAFASQYAPPSGAPAAE 169 Query: 371 FAIGVMKK---DGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTG-SKLYSID-L 423 + + + G RL+ D ++ T +P G +++F + G S++ D Sbjct: 170 YHLALFSMPAQAGGARRLIYADDAGHVGRVTHAPDGSAIVFVLEPATTGGVSQILRYDRA 229 Query: 424 NGRNETLIN------TPAYASDPQWVGF 445 G PA++ D +W+ F Sbjct: 230 TGAVTPQPGIPPQSYDPAFSPDGRWLAF 257 >gi|148655768|ref|YP_001275973.1| WD40 domain-containing protein [Roseiflexus sp. RS-1] gi|148567878|gb|ABQ90023.1| WD40 domain protein beta Propeller [Roseiflexus sp. RS-1] Length = 347 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 91/263 (34%), Gaps = 42/263 (15%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS----------- 258 D +P ++P+ +AY D ++ P R+ N S Sbjct: 78 GDDQAVQPVWAPDGSAIAYIQRDQSS--SDLMIAPLDGGGPLRLTNNGSRHPPGSFERIS 135 Query: 259 ---MILAPRFSSNGKRALISVQ---------KDEAMDIYSVDLQSNATERL-----TNTL 301 P F+ +G+ + Q + + ++++ Q RL T + Sbjct: 136 DSVWAFYPSFAPDGQTIAYASQYAPPSGSPAAEYHLALFTIPAQPGGVRRLIYADDTGHV 195 Query: 302 FINISASYSPDSSQIVFE---SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 +PD S IVF + G Q+ D + +DP +SP G Sbjct: 196 GRVTH---TPDGSAIVFTLEPAYAGGSSQIMRYDRTTGTVAP-QPDVPSGSYDPAFSPDG 251 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +AF G++ I + G L +AP +SP GR + F G+TG L Sbjct: 252 RWLAFAGRDGDRTDIFAVPAAGGTIVRLTGLGTARAPAFSPDGRRIAFLAVAPGETGFDL 311 Query: 419 YSIDLNGRNETLINTPAYASDPQ 441 + D+ +I AS P+ Sbjct: 312 WVADI-----RIIGDSIQASSPR 329 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 34/238 (14%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQ-------------ILFEPRFSPNQQKVAYAT-Y 231 + L + DG LT + + F P F+P+ Q +AYA+ Y Sbjct: 99 RDQSSSDLMIAPLDGGGPLRLTNNGSRHPPGSFERISDSVWAFYPSFAPDGQTIAYASQY 158 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFR--------SMILAPRFSSNGKRALISVQ---KDE 280 + P + G R + + +G + +++ Sbjct: 159 APPSGSPAAEYHLALFTIPAQPGGVRRLIYADDTGHVGRVTHTPDGSAIVFTLEPAYAGG 218 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + I D + + + ++SPD + F + ++ + + G R Sbjct: 219 SSQIMRYDRTTGTVAPQPDVPSGSYDPAFSPDGRWLAFAGRDGDRTDIFAVPAAGGTIVR 278 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSNLQAPT 396 ++ + P +SP G IAF + F + V R++ + +P Sbjct: 279 LT--GLGTARAPAFSPDGRRIAFLAVAPGETGFDLWVAD-----IRIIGDSIQASSPR 329 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 40/208 (19%) Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 R L +D + ++ D + ++PD S I + + L + Sbjct: 56 RLLFV--RDGTIWMWQ-DQTGRPLI----GDDQAVQPVWAPDGSAIAYIQRDQSSSDLMI 108 Query: 331 MQSNGSDQKRISQDKEA-------------SYFDPVWSPQGDLIAFTKF---------SG 368 +G R++ + F P ++P G IA+ + Sbjct: 109 APLDGGGPLRLTNNGSRHPPGSFERISDSVWAFYPSFAPDGQTIAYASQYAPPSGSPAAE 168 Query: 369 EKFAIGVMKKDGSQERLLV---EDSNLQAPTWSPSGRSLIFSRKKD-GDTGSKLYSID-L 423 A+ + R L+ + ++ T +P G +++F+ + S++ D Sbjct: 169 YHLALFTIPAQPGGVRRLIYADDTGHVGRVTHTPDGSAIVFTLEPAYAGGSSQIMRYDRT 228 Query: 424 NGRNETLIN------TPAYASDPQWVGF 445 G + PA++ D +W+ F Sbjct: 229 TGTVAPQPDVPSGSYDPAFSPDGRWLAF 256 >gi|153808186|ref|ZP_01960854.1| hypothetical protein BACCAC_02472 [Bacteroides caccae ATCC 43185] gi|149129089|gb|EDM20305.1| hypothetical protein BACCAC_02472 [Bacteroides caccae ATCC 43185] Length = 1095 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SPN ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPNGTEIVFCY--KGDIYKVPAQ----GGTAVQLTTQASYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGK---- 325 + ++ D++ + +RLT I ++++PD ++F + D G Sbjct: 78 AFASDRNGNFDLFIMPADGGTAQRLTYHSASEIPSAFTPDGKFVLFSASIQDPAGSALFP 137 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + + G +++ A + S G + S Sbjct: 138 TGAMTELYKVPAGGGRTEQVL-ATPAEWVCFDKS--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + + P ++P G S+ F +++G + +Y+ LN Sbjct: 195 TRDIWLYNTQSGKHTNLTNREGEDRNPVYAPDGNSVYFLSERNGGS-FNVYNFSLN 249 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + S + P + S NG + + D IY V Q +LT + Sbjct: 12 LTALSSYAITPLWMRDARISPNGTEIVFCYKGD----IYKVPAQGGTAVQLTTQASYEAN 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 68 PVWSPDGKQIAFASDRNGNFDLFIMPADGGTAQRLTY-HSASEIPSAFTPDGKFVLFSAS 126 Query: 367 -----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 +G + + G + ++ + + SG++ ++ +K Sbjct: 127 IQDPAGSALFPTGAMTELYKVPAGGGRTEQVLATP-AEWVCFDKSGKNFLYQDRKGFEDE 185 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + +G++ L N +P + Sbjct: 186 WRKHHTSSITRDIWLYNTQSGKHTNLTNREGEDRNPVYAP 225 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 111/304 (36%), Gaps = 33/304 (10%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 + +Y G FN ++ S S + + + +R+L+ S L + Sbjct: 228 NSVYFLSERNGGSFNVYNFSLNTSQTSNVPQEVKTITTFRTHPVRFLSISDKGTLC---Y 284 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 + + + Y + +V + R D F + S +GK+ V+ D Sbjct: 285 TYDGE--LYTQEANARPKKVNVELVRDDEKEIASLKFSQGATSASVSPDGKQVAFIVRGD 342 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-------- 331 ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 343 ----VFVTSTDYTTTKQITNTPGKEAAVSFAPDNRTLVYASERTGNWQLYTAKIARKEEA 398 Query: 332 ---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + +++ + K P +SP G +AF + + V+ + R + + Sbjct: 399 NFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDRN---RLMVLDLKTKKVRQVTD 455 Query: 389 DSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS-D 439 S WSP G+ L F + D S + + G T + Y S Sbjct: 456 GSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDIGIVSAQGGTITNLTNSGYISGS 514 Query: 440 PQWV 443 P+WV Sbjct: 515 PRWV 518 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ D + + K+I N A F+ + + + + + Sbjct: 327 SVSPDGKQVAFIVRGD------VFVTSTDYTTTKQITNTPGKEAAVSFAPDNRTLVYASE 380 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 381 RTGNWQLYTAKIARKEEANFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDR--- 437 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + IG++ Sbjct: 438 NRLMVLDLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDIGIVSA 497 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + +P W G +++F ++ G Sbjct: 498 QGGTITNLTNSGYISGSPRWVLDGNAILFQTERYG 532 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 32/219 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQAS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 +R+ + + F+ +GK L S ++Y V TE++ Sbjct: 98 TAQRLTYHSASEIPSAFTPDGKFVLFSASIQDPAGSALFPTGAMTELYKVPAGGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ + Sbjct: 158 LATPAEWV--CFDKSGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQSGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQ 382 +E +PV++P G+ + F ++ +G F + + SQ Sbjct: 214 REGEDRNPVYAPDGNSVYFLSERNGGSFNVYNFSLNTSQ 252 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 60/368 (16%), Positives = 128/368 (34%), Gaps = 59/368 (16%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++P ++ + + G+ Sbjct: 326 ASVSPDGKQVAFIVRGDVF-VTSTDYTTTKQITNTPGKEAAVSFAPDNRTLVYASERTGN 384 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + ++ + +L L PS+ P++SP+ +++A+ Sbjct: 385 WQLYTAKIARKEEANFPNATLI-------EEEVLLPSKTVERAYPQYSPDGKELAFI--- 434 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ ++D + + +++ + +S +GK I + D DI Sbjct: 435 -EDRNRLMVLDLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDI 492 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----------QLYVMQS 333 V Q LTN+ +I+ S + D + I+F+++R G L + Sbjct: 493 GIVSAQGGTITNLTNSGYISGSPRWVLDGNAILFQTERYGMRAHASWGSQQDVMLVFLNQ 552 Query: 334 NGSDQKRISQDKE--------------------ASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + D+ R+S++ D + K + + Sbjct: 553 DAYDRYRLSKEDFELLKELEKEQKKAKDGDKKKDVNKSKKDEADEDKSSEDKADKKDIVV 612 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL---NGRNETL 430 + + RL S+L + S G +L + +G G L+ ++L + + Sbjct: 613 ELNGIEDRIVRLTPNSSDLGSAILSKDGENLYYFSAFEG--GYDLWKMNLREKDTKRLHK 670 Query: 431 INTPAYAS 438 +NT +AS Sbjct: 671 LNT-GWAS 677 >gi|160882853|ref|ZP_02063856.1| hypothetical protein BACOVA_00815 [Bacteroides ovatus ATCC 8483] gi|156111717|gb|EDO13462.1| hypothetical protein BACOVA_00815 [Bacteroides ovatus ATCC 8483] Length = 1119 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + A RLT I ++++PD + F + Sbjct: 78 AFASDRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + G + S Sbjct: 138 TGAMTELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + P ++P G ++ F ++DG + +Y+ LN Sbjct: 195 TRDIWLYNTQTGKHTNLTNRGGEDRNPVYAPDGNAVYFLSERDGGS-FNVYTFFLN 249 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLTY-HSASEIPSAFTPDGKYVFFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + +G++ ++ +K Sbjct: 126 SIQDPASSALFPTGAMTELYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNRGGEDRNPVYAP 225 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 108/304 (35%), Gaps = 39/304 (12%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 + +Y + G FN F+ + V +R+L+ S L + Sbjct: 228 NAVYFLSERDGGSFNVYTFFL------NTPQEVKAVTTFKTHPVRFLSVSDKGTLC---Y 278 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 + + + Y +V + R D F + S +GK+ V+ D Sbjct: 279 TYDGE--LYTQKSGARPEKVKVELVRDDEQQLATLKFSQGATSASVSPDGKQIAFIVRGD 336 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-------- 331 ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 337 ----VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKISRKEDP 392 Query: 332 ---QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + +++ + K P +SP G +AF + + V+ + R + + Sbjct: 393 NFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDRN---RLMVLNLKTKKVRQVTD 449 Query: 389 DSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS-D 439 S WSP G+ L F + D S + + G T + Y S Sbjct: 450 GSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGAITNLTNSGYISGA 508 Query: 440 PQWV 443 P+WV Sbjct: 509 PRWV 512 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ D + + K+I N + A F+ + + + + + Sbjct: 321 SVSPDGKQIAFIVRGD------VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + +G++ Sbjct: 432 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + AP W G +++F ++ G Sbjct: 492 QGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK S ++Y V + TE++ Sbjct: 98 AARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAMTELYKVPVAGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ Sbjct: 158 LGTPAELV--CFDKTGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLTNR 214 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV++P G+ + F ++ G F + + QE V + Sbjct: 215 G-GEDRNPVYAPDGNAVYFLSERDGGSFNVYTFFLNTPQEVKAVTTFKTHPVRF 267 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQIAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERTYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 429 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q A LTN+ +I+ + + D + I+F+++R G Sbjct: 487 GIVSAQGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 >gi|269926814|ref|YP_003323437.1| peptidase S9 prolyl oligopeptidase active site domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790474|gb|ACZ42615.1| peptidase S9 prolyl oligopeptidase active site domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 594 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 6/179 (3%) Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 A S +GK+ ++ + +++T +SPD S++VF Sbjct: 14 NAYAGSISPSGKQVAFLYDVTGVPQVWITSIDGQWPDQVTYFEERVSGVKFSPDGSRLVF 73 Query: 319 ESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGEKFAIG 374 D G E+ ++ + +G + I + + WSP G IA+T F + Sbjct: 74 IMDAGGNERHGIHGVLLDGYVHEPIQPEPNVIHLWGDWSPDGRRIAYTSNKRDPRFFDVY 133 Query: 375 VMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + DG +L +D P WSP R LI SR + + + +Y +DL + L++ Sbjct: 134 IKSLDGGDPIMVLQDDGTNSVPAWSPDARHLIVSRSET-NLDNNIYLLDLESGDRKLLS 191 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 111/331 (33%), Gaps = 18/331 (5%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G + GK +V F L+DV Q+ S W + + G Sbjct: 18 GSISPSGK---QVAF-LYDVTGVPQV---WITSIDGQWPDQVTYFEERVSGVKFSPDG-- 68 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 SR++F+ ++ G ++ + + DG + P + I +SP+ +++AY + Sbjct: 69 -SRLVFIMDAG--GNERHGIHGVLLDGYVHEPIQPEPNVIHLWGDWSPDGRRIAYTSNKR 125 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSN 292 + + + P + P +S + + ++S + + +IY +DL+S Sbjct: 126 DPRFFDVYIKSLDGGDPIMVLQDDGTNSVPAWSPDARHLIVSRSETNLDNNIYLLDLESG 185 Query: 293 ATERLTNTLFIN--ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + L+ +S + IV + + + N D + + + + Sbjct: 186 DRKLLSQHEGEALFVSPHFIGSDRLIVASNKDREFVGVAEIDLNDGDFRYLI-ETDWDVD 244 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGV-MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 S G I + + + + Q S G +LI S Sbjct: 245 SLTVSKDGSKIVYALNEDGYSRLYIWQDGHIRALEYIPSGVLAQQLELSDDGSTLILSMY 304 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 ++++D++ + A P Sbjct: 305 SP-SLNLNVWAVDVSSDRCWQVTYAGRAGIP 334 >gi|150009324|ref|YP_001304067.1| putative Tricorn-like protease [Parabacteroides distasonis ATCC 8503] gi|149937748|gb|ABR44445.1| putative Tricorn-like protease [Parabacteroides distasonis ATCC 8503] Length = 1076 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S Q D IY+V +LT + +SPD +I F S+R Sbjct: 30 AISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNRS 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +++M G + KR++ + + + G I + +F G +F Sbjct: 86 GNFDVFLMNKEGGEPKRLTT-HSTNEYPTTFKDNG-HILYLANILQDAKDIQFPGTRFMQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + DG + L ++ S G L+++ K ++ Sbjct: 144 VYEISTDGGRPD-LYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDIWLCT 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 L + + + +P W Sbjct: 203 LGKDRSFQKVTTFGGEDRNPVWAA 226 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 39/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A++ DI V +++ + P +S +G++ + Sbjct: 30 AISPDGQTIAFSY--QGDIYTV----PSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------FESDREGK 325 + D++ ++ + +RLT ++ + + F R Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPTTFKDNGHILYLANILQDAKDIQFPGTR--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 Q+Y + ++G R + S G + + S I Sbjct: 142 MQVYEISTDGG---RPDLYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDI 198 Query: 374 GVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + D S +++ + P W+ G S + ++ G ++ DL G +E I Sbjct: 199 WLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSF--NIFKKDLAGNSEKQI 256 Query: 432 NT 433 T Sbjct: 257 TT 258 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 116/305 (38%), Gaps = 46/305 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + + ++G + + +R+LT L +S + Sbjct: 231 FYYLSEEKGSFN-----IFKKDLAGNSEKQITT--HTTHPVRFLTSDNSGTLC---YSYD 280 Query: 223 QQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + Y + + +V + D + + + + I S NGK + Sbjct: 281 GE--IYTVKEGQKPAKVNIQIVADKIENDVIHRLLTDGATDI---AVSPNGKEVAFITRG 335 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +Y ++ T ++TNT + +SPD +V+ ++REG +Y + + Sbjct: 336 D----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDED 391 Query: 339 KRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 K+ + E + F P++SP G+ +AF + + V+ + Q R +++ Sbjct: 392 KQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRTT---LRVINRKTKQVRTVLD 448 Query: 389 DSNLQAPT-------WSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYAS 438 L + + WSP + + G + L D +G L + Sbjct: 449 GKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDG 508 Query: 439 DPQWV 443 D +WV Sbjct: 509 DAKWV 513 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ T D VY+ ++I N FS +G+ + S + Sbjct: 321 AVSPNGKEVAFITRGD-----VYVTSIEY-ETTRQITNTPQQERNIDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTL---------FINIS--ASYSPDSSQIVFESDREGKE 326 ++ IY L + ++ T S YSPD +++ F +R Sbjct: 375 REGTWGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKE-ASYFDPV----WSPQGDL--IAFTKFSG-EKFAIGVMKK 378 L V+ + + K SY D WSP + + G I ++K Sbjct: 432 TLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKA 491 Query: 379 DGSQE-RLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E W G+++I+S + G +Y + +G Sbjct: 492 DGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAGFRSHGSWGAERDVYIMFFDGE 548 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 42/257 (16%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR------- 238 G + + DG + S + K+ Y Y ED R Sbjct: 138 GTRFMQVYEISTDGGRPDL---YSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSI 194 Query: 239 ---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++L DR+ +++ F P ++++G ++ + +I+ DL N+ + Sbjct: 195 TRDIWLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEK 254 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---------------- 339 ++T + S +S + + D ++Y ++ K Sbjct: 255 QITTHTTHPVRFLTSDNSGTLCYSYD----GEIYTVKEGQKPAKVNIQIVADKIENDVIH 310 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+ D D SP G +AF + V + R + + +S Sbjct: 311 RLLTDG---ATDIAVSPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFS 363 Query: 399 PSGRSLIFSRKKDGDTG 415 P GRSL++S +++G G Sbjct: 364 PDGRSLVYSAEREGTWG 380 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF+ I + G + R L ++ P WSP G+ + F+ + Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINT 433 G+ ++ ++ G + T Sbjct: 85 SGNF--DVFLMNKEGGEPKRLTT 105 Score = 70.0 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 42/261 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + G R LT P +SP+ QK+A+A+ + V+LM+ + Sbjct: 41 SYQGDIYTVPSSGGKARQLTTHPAH-DTRPVWSPDGQKIAFASNRSGN-FDVFLMN-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI----------YSVDLQSNATERL 297 PKR+ + F NG ++ +A DI Y + + Sbjct: 98 GEPKRLTTHSTNEYPTTFKDNGHILYLANILQDAKDIQFPGTRFMQVYEISTDGGRPDLY 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLY---------------VMQSNGSDQKRIS 342 ++ NI + S D S++++ D +G E + + + S QK + Sbjct: 158 SSLYMENI--ALSKDGSKLLYN-DYKGYEDPWRKHHQSSITRDIWLCTLGKDRSFQKVTT 214 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW--SPS 400 E +PVW+ G + F I G+ E+ + + + S + Sbjct: 215 FGGE--DRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEKQITTHTTHPV-RFLTSDN 271 Query: 401 GRSLIFSRKKDGDTGSKLYSI 421 +L +S ++Y++ Sbjct: 272 SGTLCYSYD------GEIYTV 286 Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ +VA+ ++ R K + ++ ++S + Sbjct: 408 SGQTSFQPLYSPDGNEVAFLENRTTLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPD 467 Query: 269 GKRALI---SVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L+ SV DI V LT + + + A + D +++ SDR G Sbjct: 468 SKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAG 527 Query: 325 ---------KEQLYVMQSNGS 336 + +Y+M +G Sbjct: 528 FRSHGSWGAERDVYIMFFDGE 548 >gi|299139377|ref|ZP_07032552.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] gi|298598646|gb|EFI54809.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] Length = 751 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 8/238 (3%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF- 256 G PS D+ P +SP+ VA+ + V+L T D AP ++ +F Sbjct: 470 ATGGGAHTPLPS-DKTDSSPVYSPDGHSVAFVSTRSGWG-EVWLYRTGSD-APVQLTHFH 526 Query: 257 -RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 ++ P +S +G+ S +K A ++ DL S++ LT T + + YS D + Sbjct: 527 GEGLVFPPSWSPDGRSIAFSFRKYGATNLMVCDLASHSIRTLTTTRKRDFNPVYSADGAY 586 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + F S+ +G ++ M+ +G+ + + + F P S G + F + + Sbjct: 587 LFFSSNEDGTSSIWRMRVDGTGRPEPLFVEAVASFLP--SADGRWLYFIEQGAQLSLSRR 644 Query: 376 MKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 DGS E++ V T + +G + + + S ++ ID R ++ Sbjct: 645 SLVDGSTEQIFQVAGRATFTDTIAIAGNHVYVAVSESDLAVSDIFEIDPTTRRAHVVA 702 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 107/344 (31%), Gaps = 63/344 (18%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D++ T + + G ++ + + D G P +S Sbjct: 198 DLFTGNTTDSAWSPDGRWLAVAMIPHGEDQSHIYIQDVHGDASPVRLTEGSLAETRPVWS 257 Query: 221 PNQQKVAYAT---YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR--FSSNGKRALIS 275 P+ +++A+ +++R L ++ K + + P +SS+G+ L + Sbjct: 258 PDGREIAFTRRVDMSHFEVVRFNLAAKTLNTVGKFVSYWPIGDDHPALDWSSDGRFLLTT 317 Query: 276 VQ--KDEAMDIYSVDLQSNATERLTN---TLFINISASYSPDSSQIVFESDREGKEQLYV 330 Q M I + + + +T+ +I A +SPD S I F R G LY+ Sbjct: 318 EQPVAGNPMRIVLISVATGERTSVTSPPIGSSGDIDAKFSPDGSWIAFR--RGGLGDLYM 375 Query: 331 MQSNGSDQK---RISQDKEASYFDPVWSPQGDLIAFTKFSGEK--FAIGVMKKDGSQERL 385 + G K R++ D + W G I + E + + + +DG + Sbjct: 376 VSVKGEQVKPATRLTFDTDG-VRGLAWIDHGRSILYGTQRNETTPYGLWRITRDGGTPQP 434 Query: 386 LV--------------------------------------------EDSNLQAPTWSPSG 401 + D +P +SP G Sbjct: 435 VTPADFDAINPSISPTGTLVFEHRQLITELIEQPLATGGGAHTPLPSDKTDSSPVYSPDG 494 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 S+ F + G LY + + T + P W Sbjct: 495 HSVAFVSTRSGWGEVWLYRTGSDAPVQLTHFHGEGLVFPPSWSP 538 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 94/252 (37%), Gaps = 19/252 (7%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSM 259 N + +SP+ + +A A D +Y+ D D +P R+ Sbjct: 191 FNALSPVDLFTGNTTDSAWSPDGRWLAVAMIPHGEDQSHIYIQDVHGDASPVRLTEGSLA 250 Query: 260 ILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNAT----ERLTNTLFINISAS--YSPD 312 P +S +G+ + + D + ++ +L + + ++ + + +S D Sbjct: 251 ETRPVWSPDGREIAFTRRVDMSHFEVVRFNLAAKTLNTVGKFVSYWPIGDDHPALDWSSD 310 Query: 313 SSQIVFESDR-EGKE-QLYVMQSNGSDQKRISQDKEASYFDPV--WSPQGDLIAFTKFSG 368 ++ G ++ ++ ++ ++ S D +SP G IAF G Sbjct: 311 GRFLLTTEQPVAGNPMRIVLISVATGERTSVTSPPIGSSGDIDAKFSPDGSWIAF--RRG 368 Query: 369 EKFAIGVMKKDGSQE----RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + ++ G Q RL + ++ W GRS+++ +++ T L+ I + Sbjct: 369 GLGDLYMVSVKGEQVKPATRLTFDTDGVRGLAWIDHGRSILYGTQRNETTPYGLWRITRD 428 Query: 425 GRNETLINTPAY 436 G + TPA Sbjct: 429 GGTPQPV-TPAD 439 >gi|293370700|ref|ZP_06617250.1| WD40-like protein [Bacteroides ovatus SD CMC 3f] gi|292634224|gb|EFF52763.1| WD40-like protein [Bacteroides ovatus SD CMC 3f] Length = 1096 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGK---- 325 + ++ D++ + A RLT I ++++PD I F + D G Sbjct: 78 AFASDRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYIFFSASIQDPVGSALFP 137 Query: 326 ----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + G + S Sbjct: 138 TGAMTELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + + P ++P G ++ F ++DG + +Y+ LN Sbjct: 195 TRDIWLYNTQTGKHTNLTNREGEDRNPVYAPDGNAVYFLSERDGGS-FNVYTFPLN 249 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G I F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLTY-HSASEIPSAFTPDGKYIFFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + +G++ ++ +K Sbjct: 126 SIQDPVGSALFPTGAMTELYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNREGEDRNPVYAP 225 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 99/310 (31%), Gaps = 81/310 (26%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM------- 259 +R+ P ++P+ V + + D VY + K + F++ Sbjct: 211 LTNREGEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRFLSV 270 Query: 260 ----------------------------------------------ILAPRFSSNGKRAL 273 + S +GK+ Sbjct: 271 SDKGTLCYTYDGELYTQKSGARPEKVKVELVRDDEQQLATLKFSQGATSASVSPDGKQVA 330 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-- 331 V+ D ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 331 FIVRGD----VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKI 386 Query: 332 ---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + K P +SP G +AF + + V+ + Sbjct: 387 SRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDRN---RLMVLNLKTKK 443 Query: 383 ERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R + + S WSP G+ L F + D S + + G T + Sbjct: 444 VRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGAITNLTNS 502 Query: 435 AYAS-DPQWV 443 Y S P+WV Sbjct: 503 GYISGAPRWV 512 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ D + + K+I N + A F+ + + + + + Sbjct: 321 SVSPDGKQVAFIVRGD------VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + +G++ Sbjct: 432 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + AP W G +++F ++ G Sbjct: 492 QGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 81/234 (34%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK S ++Y V + TE++ Sbjct: 98 AARRLTYHSASEIPSAFTPDGKYIFFSASIQDPVGSALFPTGAMTELYKVPVAGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ + Sbjct: 158 LGTPAELV--CFDKTGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLT-N 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +E +PV++P G+ + F ++ G F + + QE V + Sbjct: 214 REGEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRF 267 Score = 66.6 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQVAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERAYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 429 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q A LTN+ +I+ + + D + I+F+++R G Sbjct: 487 GIVSAQGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 >gi|256841892|ref|ZP_05547398.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736786|gb|EEU50114.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1076 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S Q D IY+V +LT + +SPD +I F S+R Sbjct: 30 AISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNRS 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +++M G + KR++ + + + G I + +F G +F Sbjct: 86 GNFDVFLMNKEGGEPKRLTT-HSTNEYPTTFKDNG-HILYLANILQDAKDIQFPGTRFMQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + DG + L ++ S G L+++ K ++ Sbjct: 144 VYEISTDGGRPD-LYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDIWLCT 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 L + + + +P W Sbjct: 203 LGKDRSFQKVTTFGGEDRNPVWAA 226 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 39/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A++ DI V +++ + P +S +G++ + Sbjct: 30 AISPDGQTIAFSY--QGDIYTV----PSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------FESDREGK 325 + D++ ++ + +RLT ++ + + F R Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPTTFKDNGHILYLANILQDAKDIQFPGTR--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 Q+Y + ++G R + S G + + S I Sbjct: 142 MQVYEISTDGG---RPDLYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDI 198 Query: 374 GVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + D S +++ + P W+ G S + ++ G ++ DL G +E I Sbjct: 199 WLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSF--NIFKKDLAGNSEKQI 256 Query: 432 NT 433 T Sbjct: 257 TT 258 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 115/305 (37%), Gaps = 46/305 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + + ++G + + +R+LT L +S + Sbjct: 231 FYYLSEEKGSFN-----IFKKDLAGNSEKQITT--HTTHPVRFLTSDNSGTLC---YSYD 280 Query: 223 QQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + Y + + +V + D + + + + I S NGK + Sbjct: 281 GE--IYTVKEGQKPAKVNIQIVADKIENDVIHRLLTDGATDI---AVSPNGKEVAFITRG 335 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +Y ++ T ++TNT + +SPD +V+ ++R G +Y + + Sbjct: 336 D----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAERGGTWGIYESKLTRDED 391 Query: 339 KRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 K+ + E + F P++SP G+ +AF + + V+ + Q R +++ Sbjct: 392 KQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRTT---LRVINRKTKQVRTVLD 448 Query: 389 DSNLQAPT-------WSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYAS 438 L + + WSP + + G + L D +G L + Sbjct: 449 GKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDG 508 Query: 439 DPQWV 443 D +WV Sbjct: 509 DAKWV 513 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ T D VY+ ++I N FS +G+ + S + Sbjct: 321 AVSPNGKEVAFITRGD-----VYVTSIEY-ETTRQITNTPQQERNIDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTL---------FINIS--ASYSPDSSQIVFESDREGKE 326 + IY L + ++ T S YSPD +++ F +R Sbjct: 375 RGGTWGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKE-ASYFDPV----WSPQGDL--IAFTKFSG-EKFAIGVMKK 378 L V+ + + K SY D WSP + + G I ++K Sbjct: 432 TLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKA 491 Query: 379 DGSQE-RLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E W G+++I+S + G +Y + +G Sbjct: 492 DGSGEVTNLTESGYSDGDAKWVLDGKAIIWSSDRAGFRSHGSWGAERDVYIMFFDGE 548 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 88/257 (34%), Gaps = 42/257 (16%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR------- 238 G + + DG + S + K+ Y Y ED R Sbjct: 138 GTRFMQVYEISTDGGRPDL---YSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSI 194 Query: 239 ---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++L DR+ +++ F P ++++G ++ + +I+ DL N+ + Sbjct: 195 TRDIWLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEK 254 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---------------- 339 ++T + S +S + + D ++Y ++ K Sbjct: 255 QITTHTTHPVRFLTSDNSGTLCYSYD----GEIYTVKEGQKPAKVNIQIVADKIENDVIH 310 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+ D D SP G +AF + V + R + + +S Sbjct: 311 RLLTDG---ATDIAVSPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFS 363 Query: 399 PSGRSLIFSRKKDGDTG 415 P GRSL++S ++ G G Sbjct: 364 PDGRSLVYSAERGGTWG 380 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF+ I + G + R L ++ P WSP G+ + F+ + Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINT 433 G+ ++ ++ G + T Sbjct: 85 SGNF--DVFLMNKEGGEPKRLTT 105 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 42/261 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + G R LT P +SP+ QK+A+A+ + V+LM+ + Sbjct: 41 SYQGDIYTVPSSGGKARQLTTHPAH-DTRPVWSPDGQKIAFASNRSGN-FDVFLMN-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI----------YSVDLQSNATERL 297 PKR+ + F NG ++ +A DI Y + + Sbjct: 98 GEPKRLTTHSTNEYPTTFKDNGHILYLANILQDAKDIQFPGTRFMQVYEISTDGGRPDLY 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLY---------------VMQSNGSDQKRIS 342 ++ NI + S D S++++ D +G E + + + S QK + Sbjct: 158 SSLYMENI--ALSKDGSKLLYN-DYKGYEDPWRKHHQSSITRDIWLCTLGKDRSFQKVTT 214 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW--SPS 400 E +PVW+ G + F I G+ E+ + + + S + Sbjct: 215 FGGE--DRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEKQITTHTTHPV-RFLTSDN 271 Query: 401 GRSLIFSRKKDGDTGSKLYSI 421 +L +S ++Y++ Sbjct: 272 SGTLCYSYD------GEIYTV 286 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ +VA+ ++ R K + ++ ++S + Sbjct: 408 SGQTSFQPLYSPDGNEVAFLENRTTLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPD 467 Query: 269 GKRALI---SVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L+ SV DI V LT + + + A + D I++ SDR G Sbjct: 468 SKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKWVLDGKAIIWSSDRAG 527 Query: 325 ---------KEQLYVMQSNGS--DQKRISQDKEA 347 + +Y+M +G D+ R+S++++A Sbjct: 528 FRSHGSWGAERDVYIMFFDGEAYDKFRLSKEEQA 561 >gi|37523925|ref|NP_927302.1| WD repeat-containing protein [Gloeobacter violaceus PCC 7421] gi|35214931|dbj|BAC92297.1| WD-repeat protein [Gloeobacter violaceus PCC 7421] Length = 1188 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 119/362 (32%), Gaps = 54/362 (14%) Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVT-----GRV---------IKEG 120 + IS + + + + W++ + L T G+V Sbjct: 778 HTGRIRAISFSPDGEWLASSSLDCTVKLWDAATGECLRTFTGHSGQVWSVSFAPDGQTLA 837 Query: 121 KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFV 180 L R+WD + + + A W I+ G Sbjct: 838 SGSLDQTVRIWDAATGQCL---RTLQGNAGW----------IWSVAFAPDG--------- 875 Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 +++ SG + ++ + D ++ FSP+ + +A ++D + Sbjct: 876 -QTLASGSLDRTVRIWDVPSGRCVRTLTGHGSWVWSVAFSPDGRTLASGSFDQ----TIK 930 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L D + + + + + + FS +G+ S D+ + ++ V LT Sbjct: 931 LWDAATGQCLRTLSGHNNWVRSVAFSPDGRTLA-SGSHDQTVKLWEVS-SGQCLRTLTGH 988 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD + S + + V + + + + + +SP G + Sbjct: 989 SSWVWSVAFSPDGRTVASGSF---DQTVRVWNAATGECLHTLKVDSSQVWSVAFSPDGRI 1045 Query: 361 IAFTKFSGEKFAIGVMKKDGSQ-ERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A +A+ + + R L S + + +SP R+++ S D +L Sbjct: 1046 LA---GGSGNYAVWLWDTATGECLRTLTGHTSQVWSVAFSPDSRTVVSSSH---DQTVRL 1099 Query: 419 YS 420 + Sbjct: 1100 WD 1101 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 24/284 (8%) Query: 164 QSITGEKG-DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 ++ TG G ++ +++ SG + ++ + D ++ F+P+ Sbjct: 815 RTFTGHSGQVWSVSFAPDGQTLASGSLDQTVRIWDAATGQCLRTLQGNAGWIWSVAFAPD 874 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Q +A + D V + D R + + S + + FS +G+ S D+ + Sbjct: 875 GQTLASGSLDR----TVRIWDVPSGRCVRTLTGHGSWVWSVAFSPDGRTLA-SGSFDQTI 929 Query: 283 DIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++ D + L+ S ++SPD + S + + + + + R Sbjct: 930 KLW--DAATGQCLRTLSGHNNWVRSVAFSPDGRTLASGSH---DQTVKLWEVSSGQCLRT 984 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ--ERLLVEDSNLQAPTWSP 399 + + +SP G +A F + V + L V+ S + + +SP Sbjct: 985 LTGHSSWVWSVAFSPDGRTVASGSFDQT---VRVWNAATGECLHTLKVDSSQVWSVAFSP 1041 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 GR L G ++ D E L + S W Sbjct: 1042 DGRILA-----GGSGNYAVWLWD-TATGECLRTLTGHTSQ-VWS 1078 Score = 93.5 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 44/319 (13%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 LWDV+ +++ HT D + G SG Sbjct: 721 LWDVRTGERLGTLT-----------GHT--DQVLSVAFSPDGGVL----------ASGSH 757 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 +L + + + FSP+ + +A ++ D V L D Sbjct: 758 DQTLKLWEVTTGTCLTTLTGHTGRIRAISFSPDGEWLASSSLD----CTVKLWDAATGEC 813 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTNTLFINISAS 308 + + + F+ +G+ S D+ + I+ D + L S + Sbjct: 814 LRTFTGHSGQVWSVSFAPDGQTLA-SGSLDQTVRIW--DAATGQCLRTLQGNAGWIWSVA 870 Query: 309 YSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 ++PD + S DR + + R + + +SP G +A F Sbjct: 871 FAPDGQTLASGSLDRT----VRIWDVPSGRCVRTLTGHGSWVWSVAFSPDGRTLASGSFD 926 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I + Q + N + +SP GR+L D KL+ + Sbjct: 927 QT---IKLWDAATGQCLRTLSGHNNWVRSVAFSPDGRTLASGSH---DQTVKLWEVSSGQ 980 Query: 426 RNETLINTPAYASDPQWVG 444 TL ++ + Sbjct: 981 CLRTLTGHSSWVWSVAFSP 999 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 15/226 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + L + RDG + + FSP+ +A + D + L DT Sbjct: 586 GDDSGEVRLWRV-RDGQ-QQLSFRGHTDWISALAFSPDGSVLASGSEDQ----TIKLWDT 639 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FI 303 + + + + + FS +G S +E + ++ D R + Sbjct: 640 ATGQCLRTLTGHGGWVYSVAFSPDGTLIASSSPSNETVRLW--DAAGGQCTRTFKSRTGR 697 Query: 304 NISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S ++SPD + S DR + + ++ +SP G ++A Sbjct: 698 MWSVAFSPDGHTLAAASLDRT----VKLWDVRTGERLGTLTGHTDQVLSVAFSPDGGVLA 753 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 + + + + L ++A ++SP G L S Sbjct: 754 -SGSHDQTLKLWEVTTGTCLTTLTGHTGRIRAISFSPDGEWLASSS 798 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 94/295 (31%), Gaps = 40/295 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G ++ G D V RLW V+D +Q HT D I G Sbjct: 580 GELLAIGDDSGEV--RLWRVRDGQQ-----------QLSFRGHT--DWISALAFSPDG-- 622 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + SG ++ + D ++ FSP+ +A ++ Sbjct: 623 --------SVLASGSEDQTIKLWDTATGQCLRTLTGHGGWVYSVAFSPDGTLIASSS--- 671 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D + + + + + FS +G + D + ++ D+++ Sbjct: 672 PSNETVRLWDAAGGQCTRTFKSRTGRMWSVAFSPDGHTLA-AASLDRTVKLW--DVRTGE 728 Query: 294 -TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 LT +S ++SPD + S + L + + Sbjct: 729 RLGTLTGHTDQVLSVAFSPDGGVLASGSH---DQTLKLWEVTTGTCLTTLTGHTGRIRAI 785 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLV-EDSNLQAPTWSPSGRSLI 405 +SP G+ +A + + + + R + + +++P G++L Sbjct: 786 SFSPDGEWLASSSLDCT---VKLWDAATGECLRTFTGHSGQVWSVSFAPDGQTLA 837 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 34/249 (13%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA-----HTISDDIYQSIT---- 167 +LWD + + + R +A T++ + Sbjct: 918 RTLASGSFDQTIKLWDAATGQCL--RTLSGHNNWVRSVAFSPDGRTLASGSHDQTVKLWE 975 Query: 168 ------------GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 ++ +V SG ++ V + + ++ Sbjct: 976 VSSGQCLRTLTGHSSWVWSVAFSPDGRTVASGSFDQTVRVWNAATGECLHTLKVDSSQVW 1035 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 FSP+ + +A V+L DT + + S + + FS + R ++S Sbjct: 1036 SVAFSPDGRILA----GGSGNYAVWLWDTATGECLRTLTGHTSQVWSVAFSPD-SRTVVS 1090 Query: 276 VQKDEAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 D+ + ++ D + LT S ++SPD ++ S E + + S+ Sbjct: 1091 SSHDQTVRLW--DAATGECLRTLTGHTSQVWSVAFSPDGRTVISGSQ---DETIRLWDSH 1145 Query: 335 GSDQKRISQ 343 + + Sbjct: 1146 TGKPLELLR 1154 >gi|326800508|ref|YP_004318327.1| hypothetical protein Sph21_3114 [Sphingobacterium sp. 21] gi|326551272|gb|ADZ79657.1| WD40-like beta Propeller containing protein [Sphingobacterium sp. 21] Length = 1043 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 29/241 (12%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNA 293 L + + N +M ++P S +GK +KD ++D++ D + Sbjct: 277 KPLLIDTAQVPRGQMIINNKNGGNMNVSPTISPDGKYVAFLSEKDLFSIDLFLADAGTGK 336 Query: 294 TER----------LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS-NGSDQKRIS 342 R + +I + S+S DS + F +G+ +L ++ NG S Sbjct: 337 IIRKLSSRQNNSHIDEFSYIESAGSFSHDSKKFAFSVFSQGRTKLLIVDVENGKTLATES 396 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSG 401 + + WSP G+L+AF+ I + L D + P++S G Sbjct: 397 MGDIGEFANITWSPDGNLVAFSGLKNGYSDIYLYDLSSKSLTQLTNDWYSDYHPSFSRDG 456 Query: 402 RSLIFSRKK--------DGDTGSKLYSIDLNGRNETLIN--------TPAYASDPQWVGF 445 + ++FS + D L ID++ + I+ P +++D + + F Sbjct: 457 KKIVFSTDRLSLESGYEGVDIPLGLAIIDISTKEIRKIDIFPGANNLNPQFSADDKQLYF 516 Query: 446 M 446 + Sbjct: 517 L 517 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FRSM 259 + + P SP+ + VA+ + D + ++L D + +++ + F + Sbjct: 297 NGGNMNVSPTISPDGKYVAFLSEKDLFSIDLFLADAGTGKIIRKLSSRQNNSHIDEFSYI 356 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA---SYSPDSSQI 316 A FS + K+ SV + VD+++ T ++ ++SPD + + Sbjct: 357 ESAGSFSHDSKKFAFSVFSQGRTKLLIVDVENGK-TLATESMGDIGEFANITWSPDGNLV 415 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--------- 367 F + G +Y+ + +++ D S + P +S G I F+ Sbjct: 416 AFSGLKNGYSDIYLYDLSSKSLTQLTND-WYSDYHPSFSRDGKKIVFSTDRLSLESGYEG 474 Query: 368 -GEKFAIGVMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + ++ + R + +N P +S + L F +DG Y+ + Sbjct: 475 VDIPLGLAIIDISTKEIRKIDIFPGANNLNPQFSADDKQLYFLSNRDGFRNLYRYTFS-S 533 Query: 425 GRNETLIN 432 G+ E L + Sbjct: 534 GKTEQLTD 541 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 83/233 (35%), Gaps = 27/233 (11%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSR---------DQILFEPRFSPNQQKVAYA 229 +V+ + L + D I SR I FS + +K A++ Sbjct: 313 YVAFLSEKDLFSIDLFLADAGTGKIIRKLSSRQNNSHIDEFSYIESAGSFSHDSKKFAFS 372 Query: 230 TYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + I+ V T + IG F ++ +S +G S K+ DIY Sbjct: 373 VFSQGRTKLLIVDVENGKTLATESMGDIGEFANIT----WSPDGNLVAFSGLKNGYSDIY 428 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EGKE------QLYVMQSNG 335 DL S + +LTN + + S+S D +IVF +DR G E L ++ + Sbjct: 429 LYDLSSKSLTQLTNDWYSDYHPSFSRDGKKIVFSTDRLSLESGYEGVDIPLGLAIIDIST 488 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + ++I A+ +P +S + F + + L + Sbjct: 489 KEIRKIDIFPGANNLNPQFSADDKQLYFLSNRDGFRNLYRYTFSSGKTEQLTD 541 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 18/220 (8%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G F+ + SV S L V +G + + +SP+ VA++ Sbjct: 360 GSFSHDSKKFAFSVFSQGRTKLLIVDVENGKTLATESMGDIGEFANITWSPDGNLVAFSG 419 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----------DE 280 + +YL D ++ ++ N P FS +GK+ + S + D Sbjct: 420 LKNG-YSDIYLYDL-SSKSLTQLTNDWYSDYHPSFSRDGKKIVFSTDRLSLESGYEGVDI 477 Query: 281 AMDIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + + +D+ + ++ N++ +S D Q+ F S+R+G LY + + Sbjct: 478 PLGLAIIDISTKEIRKIDIFPGANNLNPQFSADDKQLYFLSNRDGFRNLYRYTFSSGKTE 537 Query: 340 RISQDKEASYFDPVWSP-----QGDLIAFTKFSGEKFAIG 374 +++ +SP D I ++ + +K+ I Sbjct: 538 QLTDYFTGISGITEYSPALSVSANDDILYSYYRSQKYTIY 577 >gi|116620509|ref|YP_822665.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] gi|116223671|gb|ABJ82380.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] Length = 1121 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 39/245 (15%) Query: 228 YATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + +Y + + YL D I +R+ + ++ + PRFS +G S ++ D Sbjct: 27 HPSYANGKVAFSYLGDLWIANENGSGAQRLTDNQARDVYPRFSPDGNWIAFSSNREGNYD 86 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-----EQLYVMQSNGSDQ 338 +Y V +LT + ++SPD +I+F S R L+ + + G + Sbjct: 87 VYVVAATGGKPRQLTFHSADDNVVNWSPDGKKILFTSARGNGVFPSVMTLWEIPAEGGIE 146 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTK----------FSGEKFAIGVMKKDGSQERLLVE 388 + + D A +SP G +AFT+ + VM+ + L Sbjct: 147 RPVPTDWGA---WASYSPDGSKLAFTRHPATWSRKHYRGSYAADLWVMELASKKFTRLGN 203 Query: 389 D---SNLQAPTWSPSGRSLIFSRKKDGD-------------TGSKLYSIDLNGRNETLIN 432 + N P ++ +G + F + + + + ++ I G ET + Sbjct: 204 EDYKGNRLWPMYAKNGE-IYFVSNQTENEKNIQFGGPAVMKSVNNIWKISEKGGKETQVT 262 Query: 433 TPAYA 437 A Sbjct: 263 HHADG 267 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 111/283 (39%), Gaps = 47/283 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + + +G+ + LT ++ + ++ PRFSP+ +A+++ + + VY++ P+ Sbjct: 42 DLWIANENGSGAQRLTDNQARDVY-PRFSPDGNWIAFSSNREGN-YDVYVVA-ATGGKPR 98 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEA-----MDIYSVDLQSNATERLTNTLFINIS 306 ++ + +S +GK+ L + + M ++ + + + Sbjct: 99 QLTFHSADDNVVNWSPDGKKILFTSARGNGVFPSVMTLWEIPAEGGIERPVPTDWG--AW 156 Query: 307 ASYSPDSSQIVFESDREGKEQ----------LYVMQSNGSDQKRISQDKE-ASYFDPVWS 355 ASYSPD S++ F + L+VM+ R+ + + P+++ Sbjct: 157 ASYSPDGSKLAFTRHPATWSRKHYRGSYAADLWVMELASKKFTRLGNEDYKGNRLWPMYA 216 Query: 356 PQGDLIAFTKFSGEK---------------FAIGVMKKDGSQERLLVE--DSNLQAPTWS 398 G+ I F E I + + G +E + D NL P+ S Sbjct: 217 KNGE-IYFVSNQTENEKNIQFGGPAVMKSVNNIWKISEKGGKETQVTHHADGNLFFPSIS 275 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRN--ETLINTPAYASD 439 G+++++ + ++ +D E +I+ A + + Sbjct: 276 ADGKTIVY------EDNFGIWKLDTASGKSSEIVIDIKADSKE 312 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 109/271 (40%), Gaps = 31/271 (11%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 N++ + G +T D LF P S + + + Y ED ++ +DT ++ Sbjct: 246 NNIWKISEKGGKETQVTHHADGNLFFPSISADGKTIVY-----EDNFGIWKLDTASGKSS 300 Query: 251 KRIGNFR-------------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 + + + + + A S + KRA I +I+++ +R+ Sbjct: 301 EIVIDIKADSKENDRELVTLTDAQAFSLSPSNKRAAIVA----HGEIFTIATDRGEPQRV 356 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 + + + +SP+ I F SDR G+E++Y+ G + K++S D + VW Sbjct: 357 SESAWKEQEPRWSPNGKWIAFVSDRTGREEIYLSDELGKNAKKLS-DVDCDKNSLVWGAD 415 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTG 415 + ++ G + ++ + + +L + N+ +SP G+ L ++R +D Sbjct: 416 SKALLWS---GSDHKLRLVDVESGKTDILAQGEAGNITGAQFSPDGKYLSYAR-QDKLLR 471 Query: 416 SKLYSIDLNGRNETLINTPAYASD--PQWVG 444 ++ +L E +I + +W Sbjct: 472 PHVWVKELATGQERMIGGEDFLQSNGAKWTP 502 Score = 97.4 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 48/350 (13%), Positives = 116/350 (33%), Gaps = 74/350 (21%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 + +++ + D+Y + + I F S + + V+ G R LT Sbjct: 51 SGAQRLTDNQARDVYPRFSPDGNW----IAFSSNREGN----YDVYVVAATGGKPRQLTF 102 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI---DRAPKRIGNFRSMILAPRF 265 +SP+ +K+ + + + + I + + + + Sbjct: 103 HSADDNVV-NWSPDGKKILFTSARGNGVFPSVMTLWEIPAEGGIERPVPTDWGAWAS--Y 159 Query: 266 SSNGKRALIS----------VQKDEAMDIYSVDLQSNATERLTN--TLFINISASYSPDS 313 S +G + + + A D++ ++L S RL N + Y+ + Sbjct: 160 SPDGSKLAFTRHPATWSRKHYRGSYAADLWVMELASKKFTRLGNEDYKGNRLWPMYAKNG 219 Query: 314 SQIVFESDREGK---------------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 +I F S++ ++ + G + +++ + + F P S G Sbjct: 220 -EIYFVSNQTENEKNIQFGGPAVMKSVNNIWKISEKGGKETQVTHHADGNLFFPSISADG 278 Query: 359 DLIAFTKFSGEKFAIGVMKKDGS---------------QERLLVEDSNLQAPTWSPSGRS 403 I + + F I + +R LV ++ QA + SPS + Sbjct: 279 KTIVY----EDNFGIWKLDTASGKSSEIVIDIKADSKENDRELVTLTDAQAFSLSPSNKR 334 Query: 404 LIFSRKKDGDTGSKLYSIDLN-GRNETLINT------PAYASDPQWVGFM 446 ++++I + G + + + P ++ + +W+ F+ Sbjct: 335 AAIVAH------GEIFTIATDRGEPQRVSESAWKEQEPRWSPNGKWIAFV 378 Score = 45.8 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 63/280 (22%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++D + L + +FSP+ + ++YA D V++ + + Sbjct: 428 LRLVDVESGKTDILAQGEAGNITGAQFSPDGKYLSYARQDKLLRPHVWVKELATGQERMI 487 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS-YSP 311 G +++ +GK+ L+ + ++ + +L + + + SP Sbjct: 488 GGEDFLQSNGAKWTPDGKKLLLI----GGVGAPAMAALNRTVTQL---YAVALLPADKSP 540 Query: 312 DSSQIVFESDREGK--------------------EQLYVMQSNGSDQKRISQDK--EASY 349 DS +I S+ + + ++ +RI+Q S Sbjct: 541 DSGEI--NSEEQAMAAANDPAAGRSGRGGGTAPAPAVKIVW--DGIDRRITQLTHMPGSV 596 Query: 350 FDPVWSPQGDLIAFTKF-------SGEKFAIGVMKKDGSQERLLVEDS------------ 390 V +P F+ + + + +DG++ L + Sbjct: 597 MFVVPAPDSRTYLFSAQGAAADDPAAGGPGMYTIAEDGTRVTKLNTTAADAGAAGRGRGG 656 Query: 391 ----NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 P WS RS+ + + G LYS+ + G Sbjct: 657 RGGGGFNEPQWSRDNRSIYYLQ------GGGLYSLAVGGT 690 >gi|301311124|ref|ZP_07217053.1| MdsD protein [Bacteroides sp. 20_3] gi|300831187|gb|EFK61828.1| MdsD protein [Bacteroides sp. 20_3] Length = 1076 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S Q D IY+V +LT + +SPD +I F S+R Sbjct: 30 AISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNRS 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +++M G + KR++ + + + G I + +F G +F Sbjct: 86 GNFDVFLMNKEGGEPKRLTT-HSTNEYPTTFKDNG-HILYLANVLQDAKDIQFPGTRFMQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + DG + L ++ S G L+++ K ++ Sbjct: 144 VYEISTDGGRPD-LYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDIWLCT 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 L + + + +P W Sbjct: 203 LGKDRSFQKVTTFGGEDRNPVWAA 226 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 39/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A++ DI V +++ + P +S +G+R + Sbjct: 30 AISPDGQTIAFSY--QGDIYTV----PSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------FESDREGK 325 + D++ ++ + +RLT ++ + + F R Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPTTFKDNGHILYLANVLQDAKDIQFPGTR--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 Q+Y + ++G R + S G + + S I Sbjct: 142 MQVYEISTDGG---RPDLYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDI 198 Query: 374 GVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + D S +++ + P W+ G S + ++ G ++ DL G +E I Sbjct: 199 WLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSF--NIFKKDLAGNSEKQI 256 Query: 432 NT 433 T Sbjct: 257 TT 258 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 116/305 (38%), Gaps = 46/305 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + + ++G + + +R+LT L +S + Sbjct: 231 FYYLSEEKGSFN-----IFKKDLAGNSEKQITT--HTTHPVRFLTSDNSGTLC---YSYD 280 Query: 223 QQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + Y + + +V + D + + + + I S NGK + Sbjct: 281 GE--IYTVKEGQKPAKVNIQIVADKIENDVIHRLLTDGATDI---AVSPNGKEVAFITRG 335 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +Y ++ T ++TNT + +SPD +V+ ++REG +Y + + Sbjct: 336 D----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDED 391 Query: 339 KRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 K+ + E + F P++SP G+ +AF + + V+ + Q R +++ Sbjct: 392 KQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRTT---LRVINRKTKQVRTVLD 448 Query: 389 DSNLQAPT-------WSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYAS 438 L + + WSP + + G + L D +G L + Sbjct: 449 GKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDG 508 Query: 439 DPQWV 443 D +WV Sbjct: 509 DAKWV 513 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ T D VY+ ++I N FS +G+ + S + Sbjct: 321 AVSPNGKEVAFITRGD-----VYVTSIEY-ETTRQITNTPQQERNIDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTL---------FINIS--ASYSPDSSQIVFESDREGKE 326 ++ IY L + ++ T S YSPD +++ F +R Sbjct: 375 REGTWGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKE-ASYFDPV----WSPQGDL--IAFTKFSG-EKFAIGVMKK 378 L V+ + + K SY D WSP + + G I ++K Sbjct: 432 TLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKA 491 Query: 379 DGSQE-RLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E W G+++I+S + G +Y + +G Sbjct: 492 DGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAGFRSHGSWGAERDVYIMFFDGE 548 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 42/257 (16%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR------- 238 G + + DG + S + K+ Y Y ED R Sbjct: 138 GTRFMQVYEISTDGGRPDL---YSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSI 194 Query: 239 ---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++L DR+ +++ F P ++++G ++ + +I+ DL N+ + Sbjct: 195 TRDIWLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEK 254 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---------------- 339 ++T + S +S + + D ++Y ++ K Sbjct: 255 QITTHTTHPVRFLTSDNSGTLCYSYD----GEIYTVKEGQKPAKVNIQIVADKIENDVIH 310 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+ D D SP G +AF + V + R + + +S Sbjct: 311 RLLTDG---ATDIAVSPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFS 363 Query: 399 PSGRSLIFSRKKDGDTG 415 P GRSL++S +++G G Sbjct: 364 PDGRSLVYSAEREGTWG 380 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF+ I + G + R L ++ P WSP G+ + F+ + Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINT 433 G+ ++ ++ G + T Sbjct: 85 SGNF--DVFLMNKEGGEPKRLTT 105 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 42/261 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + G R LT P +SP+ Q++A+A+ + V+LM+ + Sbjct: 41 SYQGDIYTVPSSGGKARQLTTHPAH-DTRPVWSPDGQRIAFASNRSGN-FDVFLMN-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI----------YSVDLQSNATERL 297 PKR+ + F NG ++ +A DI Y + + Sbjct: 98 GEPKRLTTHSTNEYPTTFKDNGHILYLANVLQDAKDIQFPGTRFMQVYEISTDGGRPDLY 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLY---------------VMQSNGSDQKRIS 342 ++ NI + S D S++++ D +G E + + + S QK + Sbjct: 158 SSLYMENI--ALSKDGSKLLYN-DYKGYEDPWRKHHQSSITRDIWLCTLGKDRSFQKVTT 214 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW--SPS 400 E +PVW+ G + F I G+ E+ + + + S + Sbjct: 215 FGGE--DRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEKQITTHTTHPV-RFLTSDN 271 Query: 401 GRSLIFSRKKDGDTGSKLYSI 421 +L +S ++Y++ Sbjct: 272 SGTLCYSYD------GEIYTV 286 Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ +VA+ ++ R K + ++ ++S + Sbjct: 408 SGQTSFQPLYSPDGNEVAFLENRTTLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPD 467 Query: 269 GKRALI---SVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L+ SV DI V LT + + + A + D +++ SDR G Sbjct: 468 SKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAG 527 Query: 325 ---------KEQLYVMQSNGS 336 + +Y+M +G Sbjct: 528 FRSHGSWGAERDVYIMFFDGE 548 >gi|302381963|ref|YP_003817786.1| peptidase S41 [Brevundimonas subvibrioides ATCC 15264] gi|302192591|gb|ADL00163.1| peptidase S41 [Brevundimonas subvibrioides ATCC 15264] Length = 1113 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 92/254 (36%), Gaps = 42/254 (16%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 QIL +P S +Q VA+ D R R+ + AP FS +G+ Sbjct: 31 SQILQQPAISADQ--VAFVYGGD------LWTVARSGGRAARLTIGVGIESAPIFSPDGR 82 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE---Q 327 + + D +D+Y+V R+T + + +SPD S+++F S+R Q Sbjct: 83 SIAFTGEYDGNIDVYTVPATGGQPRRITWHPGNDAAVGWSPDGSRVLFRSNRSAASRYTQ 142 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT------------------KFSGE 369 L+ + + G + SP G +A++ G Sbjct: 143 LFSVSAEGGAPDVM---PLPYAHSGQMSPDGRAVAYSPFAPAFGFEFGNYTAWGNYRGGR 199 Query: 370 KFAIGVMKKDG--SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 I V DG + E E SN +P W G + F +DG +YS D Sbjct: 200 ASTIKVTTLDGLATVEVPQAEGSNDLSPVW--MGGKIYFLSDRDGP--ISIYSYD----P 251 Query: 428 ETLINTPAYASDPQ 441 T P +A+D Sbjct: 252 ATRAVAPVWANDGS 265 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 96/275 (34%), Gaps = 32/275 (11%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV----------------AYATYDDEDI 236 + DRDG Y + + P ++ + + A +T Sbjct: 235 YFLSDRDGPISIYSYDPATRAV-APVWANDGSPIRSLSTDGRTLIFDRLGALSTLVPGGQ 293 Query: 237 LRVYLMDTRIDRA--PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 + +D D RI N + S + R + + +I + + + Sbjct: 294 PQALSVDVAGDMPEARARIVNVADQVQTVSLSPSAARVAVEARG----EILTAPVTRGSV 349 Query: 295 ERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR--ISQDKEASYFD 351 LTNT + S ++SPD + + SD G L+V NG R + Y + Sbjct: 350 RNLTNTPGVMERSPAWSPDGQSVAYFSDESGLYALHVAPQNGEGAVRKFPLAAEPTYYAN 409 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVM--KKDGSQERLLVEDSNLQA--PTWSPSGRSLIFS 407 PVWSP IAF+ + + + +Q+ WSP + L++S Sbjct: 410 PVWSPDSKKIAFSDNHLRNWVLDTTTGRLSEVGTAQTHGGFTVQSTDMAWSPDSKFLVYS 469 Query: 408 RKKDGD-TGSKLYSIDLNGRNETLINTPAYASDPQ 441 R T LYS+ +G + L + A DP Sbjct: 470 RNGANRLTVLNLYSV-ADGSSTALTSNLGDARDPA 503 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 63/191 (32%), Gaps = 18/191 (9%) Query: 246 IDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER---LTNTL 301 + + + N M +P +S +G+ + ++ R L Sbjct: 345 TRGSVRNLTNTPGVMERSPAWSPDGQSVAYFSDESGLYALHVAPQNGEGAVRKFPLAAEP 404 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-----VWSP 356 + +SPDS +I F + + +V+ + + + F WSP Sbjct: 405 TYYANPVWSPDSKKIAFS---DNHLRNWVLDTTTGRLSEVGTAQTHGGFTVQSTDMAWSP 461 Query: 357 QGDLIAFTKFSGEKF---AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 + +++ + + + DGS L + + P + G L + + Sbjct: 462 DSKFLVYSRNGANRLTVLNLYSV-ADGSSTALTSNLGDARDPAFDAGGDYLYYVAS--NN 518 Query: 414 TGSKLYSIDLN 424 G + Y +D+ Sbjct: 519 AGGQTYGLDMT 529 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 18/232 (7%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 + I + L S + V+ + + ++R LT + + P +S Sbjct: 307 EARARIVNVADQVQTVSLSPSAARVAVEARGEILTAPVTRGSVRNLTNTPGVMERSPAWS 366 Query: 221 PNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 P+ Q VAY + + L V + + + P +S + K+ S D Sbjct: 367 PDGQSVAYFSDESGLYALHVAPQNGEGAVRKFPLAAEPTYYANPVWSPDSKKIAFS---D 423 Query: 280 EAMDIYSVDLQSNATERL----TNTLFI--NISASYSPDSSQIVFESDREGKEQLYVMQ- 332 + + +D + + T+ F + ++SPDS +V+ R G +L V+ Sbjct: 424 NHLRNWVLDTTTGRLSEVGTAQTHGGFTVQSTDMAWSPDSKFLVYS--RNGANRLTVLNL 481 Query: 333 ---SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 ++GS S +A DP + GD + + + + + Sbjct: 482 YSVADGSSTALTSNLGDA--RDPAFDAGGDYLYYVASNNAGGQTYGLDMTSN 531 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 90/340 (26%), Gaps = 110/340 (32%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + R G LT I P FSP+ + +A+ D +I + T P+ Sbjct: 51 DLWTVARSGGRAARLTIG-VGIESAPIFSPDGRSIAFTGEYDGNIDVYTVPAT--GGQPR 107 Query: 252 RIGNFRSMILAPRFSSNG---------------KRALISVQKDEAMDIY--------SVD 288 RI A +S +G + + A D+ + Sbjct: 108 RITWHPGNDAAVGWSPDGSRVLFRSNRSAASRYTQLFSVSAEGGAPDVMPLPYAHSGQMS 167 Query: 289 LQSNAT-----------------------------ERLTN------------TLFINISA 307 A ++T ++S Sbjct: 168 PDGRAVAYSPFAPAFGFEFGNYTAWGNYRGGRASTIKVTTLDGLATVEVPQAEGSNDLSP 227 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + +I F SDR+G +Y S D PVW+ G I Sbjct: 228 VWM--GGKIYFLSDRDGPISIY------------SYDPATRAVAPVWANDGSPIRSLSTD 273 Query: 368 GEKF---AIGVMKK--DGSQERLLVEDSNLQAP----------------TWSPSGRSLIF 406 G +G + G Q + L D P + SPS Sbjct: 274 GRTLIFDRLGALSTLVPGGQPQALSVDVAGDMPEARARIVNVADQVQTVSLSPS------ 327 Query: 407 SRKKDGDTGSKLYSIDLN-GRNETLINTPA-YASDPQWVG 444 + + + ++ + + G L NTP P W Sbjct: 328 AARVAVEARGEILTAPVTRGSVRNLTNTPGVMERSPAWSP 367 >gi|262196481|ref|YP_003267690.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079828|gb|ACY15797.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1398 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 13/260 (5%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 VS ++ V DG + D+ ++ FSP+ + A+ D V + Sbjct: 1035 VSASADKTVRVWRADGQGQPLILRGHDEAVYSASFSPDGAHIVSASEDK----TVRVWRA 1090 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 P + + + FS +G + S +D+ + ++ D + L Sbjct: 1091 DGQSEPLILSGHDEPVFSTSFSPDGAHIV-SASEDKTVRVWRAD-GTGEPLILRGHDDEV 1148 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SAS+SPD + IV S + + V +++G Q I + + +SP G I Sbjct: 1149 RSASFSPDGAHIVSAS---WDKTVRVWRADGQGQPLILRGHDDGVTSTSFSPDGAHIVSA 1205 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + + G L D + + ++SP G ++ D ++++ D + Sbjct: 1206 SWD-KTVRVWRADGQGQPLILRGHDKAVISASFSPDGAHIV---SAALDNTVRVWNADGS 1261 Query: 425 GRNETLINTPAYASDPQWVG 444 G L + S ++ Sbjct: 1262 GEPLILRGHDDWVSWAEFSP 1281 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 106/300 (35%), Gaps = 15/300 (5%) Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESV--VSGIIKNSLCVMDRDGANIR 204 P + + + D+ + E + F + VS ++ V DG Sbjct: 953 PPGALHEAKRLLGSDVAPVVFTEHDEAVYSASFSPDGAHLVSTSADKTVRVWRADGTGEP 1012 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + D+ + FSP+ + A+ D V + P + + + Sbjct: 1013 LILRGHDEAVISASFSPDGAHIVSASADK----TVRVWRADGQGQPLILRGHDEAVYSAS 1068 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G + S +D+ + ++ D QS L+ S S+SPD + IV S+ Sbjct: 1069 FSPDGAHIV-SASEDKTVRVWRADGQSEPLI-LSGHDEPVFSTSFSPDGAHIVSASE--- 1123 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + + V +++G+ + I + + +SP G I + + + G Sbjct: 1124 DKTVRVWRADGTGEPLILRGHDDEVRSASFSPDGAHIVSASWD-KTVRVWRADGQGQPLI 1182 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L D + + ++SP G ++ + D +++ D G+ L + Sbjct: 1183 LRGHDDGVTSTSFSPDGAHIVSASW---DKTVRVWRADGQGQPLILRGHDKAVISASFSP 1239 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 16/245 (6%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 ++ F++ +VS ++ V DG + D + FSP+ + Sbjct: 1102 HDEPVFSTSFSPDGAHIVSASEDKTVRVWRADGTGEPLILRGHDDEVRSASFSPDGAHIV 1161 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 A++D V + P + + + FS +G + S D+ + ++ Sbjct: 1162 SASWDK----TVRVWRADGQGQPLILRGHDDGVTSTSFSPDGAHIV-SASWDKTVRVWRA 1216 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D Q + + ISAS+SPD + IV + V ++GS + I + + Sbjct: 1217 DGQGQPLILRGHDKAV-ISASFSPDGAHIV---SAALDNTVRVWNADGSGEPLILRGHDD 1272 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP---TWSPSGRSL 404 +SP G I I + + DG E +++ + Q P +SP G+ + Sbjct: 1273 WVSWAEFSPDGRFIVSASKDKT---IRIWRADGMGEPVILR-GHEQWPNTARFSPDGQRV 1328 Query: 405 IFSRK 409 + + Sbjct: 1329 VSASD 1333 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 VS + N++ V + DG+ + D + FSP+ + + A+ D + + Sbjct: 1245 VSAALDNTVRVWNADGSGEPLILRGHDDWVSWAEFSPDGRFIVSASKDK----TIRIWRA 1300 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 P + RFS +G+R ++S D + ++S Sbjct: 1301 DGMGEPVILRGHEQWPNTARFSPDGQR-VVSASDDMTVRVWS 1341 >gi|325103152|ref|YP_004272806.1| amidohydrolase [Pedobacter saltans DSM 12145] gi|324972000|gb|ADY50984.1| amidohydrolase [Pedobacter saltans DSM 12145] Length = 1075 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 24/200 (12%) Query: 242 MDTRIDRAPKRIGNF---RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + P + NF + S +GK + + D IY + + E L Sbjct: 23 WNIEKPSGPTKTTNFSTNEGTWMNLDVSPDGKFIVFDLLGD----IYKMPVTGGDAELLA 78 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 L + +SPD I + SD++G + +++M ++GS ++ I+++ + VW+P G Sbjct: 79 GGLAWEVQPRFSPDGKLISYTSDKDGADNIWIMNADGSGKRAITKENINLLNNAVWTPDG 138 Query: 359 DLIA-----FTKFSGEKFAIGVMKKDGS-QERLLVE----DSNLQAPTWSPSGRSLIFSR 408 + + + + + G + L + NL P S SG+ L +S Sbjct: 139 QYLVARKNFLGRRTNAAGELWMYHVSGGFEGTQLTQRKRGQRNLGEPFVSKSGKELYYSE 198 Query: 409 K-------KDGDTGSKLYSI 421 + D ++Y I Sbjct: 199 DISPAYLQYNKDPNGEIYQI 218 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 26/201 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +KVA++ +Y+ + D P+R+ P FS +G + + D Sbjct: 362 SPDLKKVAFSA-----GGYIYVKNL-PDGKPERLTTETDWEFDPCFSPDGNFIIYTSWND 415 Query: 280 E-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG------------KE 326 E I +DL S ++LT + +S IV+ R+G Sbjct: 416 ELKGSIMKIDLSSKKIDKLTPRGGFYYTPKFSNKGDLIVY---RKGVGNDLLGFTFSKNP 472 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +Y + +NG + K I ++ P ++ + I +T K A+ G+ R Sbjct: 473 GIYTISANGGEPKLILKEG----LKPQFNKSDNRIFYTAKEDGKNALKSCDLSGNNIRTH 528 Query: 387 VEDSNLQAPTWSPSGRSLIFS 407 SP R L FS Sbjct: 529 YTTKLGTEFILSPDNRWLAFS 549 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 105/279 (37%), Gaps = 48/279 (17%) Query: 204 RYLTPSRDQILFEPR--FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 R L S+ P + P+ + V + Y I ++ ++ + P ++ +++ Sbjct: 281 RDLQESKASYGLYPNFNWLPDNKTVIF--YAKGKINKIDILYQMVQEIPFKVNVKQTISE 338 Query: 262 APRF-------------------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 A + S + K+ S IY +L ERLT Sbjct: 339 ALHYDQKVFNEEFDAKMIRQLVTSPDLKKVAFSA----GGYIYVKNLPDGKPERLTTETD 394 Query: 303 INISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +SPD + I++ S + K + + + +++ Y+ P +S +GDLI Sbjct: 395 WEFDPCFSPDGNFIIYTSWNDELKGSIMKIDLSSKKIDKLTPRG-GFYYTPKFSNKGDLI 453 Query: 362 AFTKFSGE---------KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + K G I + +G + +L++++ P ++ S + ++ K+DG Sbjct: 454 VYRKGVGNDLLGFTFSKNPGIYTISANGGEPKLILKEGLK--PQFNKSDNRIFYTAKEDG 511 Query: 413 DTGSKLYSIDLNGRNET------LINTPAYASDPQWVGF 445 K S DL+G N L + D +W+ F Sbjct: 512 KNALK--SCDLSGNNIRTHYTTKLGTEFILSPDNRWLAF 548 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 34/262 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + M G + L +PRFSP+ + ++Y + D + +++M+ Sbjct: 63 DIYKMPVTGGDAE-LLAGGLAWEVQPRFSPDGKLISYTS-DKDGADNIWIMNADGSGKRA 120 Query: 252 RIGNFRSMILAPRFSSNGKRAL-----ISVQKDEAMDIYSVDLQSN-ATERLT---NTLF 302 +++ ++ +G+ + + + + A +++ + +LT Sbjct: 121 ITKENINLLNNAVWTPDGQYLVARKNFLGRRTNAAGELWMYHVSGGFEGTQLTQRKRGQR 180 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGS--DQKRI---------SQDKEASYFD 351 S ++ + D Y NG KR+ Sbjct: 181 NLGEPFVSKSGKELYYSEDISPAYLQYNKDPNGEIYQIKRLILEDETVENVAGGTGGAVR 240 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED------------SNLQAPTWSP 399 P SP G +A+ K + K + + + +E +L +D W P Sbjct: 241 PQVSPNGKYLAYVKRNKLKTNLMIQDLETGEEFILYDDLSRDLQESKASYGLYPNFNWLP 300 Query: 400 SGRSLIFSRKKDGDTGSKLYSI 421 +++IF K + LY + Sbjct: 301 DNKTVIFYAKGKINKIDILYQM 322 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%) Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 I+F G + ++ K + E ++ + SP G I F I Sbjct: 10 ILFVLISSGLHAQWNIEKPSGPTKTTNFSTNEGTWMNLDVSPDGKFIVFDLLGD----IY 65 Query: 375 VMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET---- 429 M G LL + P +SP G+ + ++ KDG ++ ++ +G + Sbjct: 66 KMPVTGGDAELLAGGLAWEVQPRFSPDGKLISYTSDKDG--ADNIWIMNADGSGKRAITK 123 Query: 430 ----LINTPAYASDPQWV 443 L+N + D Q++ Sbjct: 124 ENINLLNNAVWTPDGQYL 141 >gi|262384211|ref|ZP_06077347.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295109|gb|EEY83041.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 1076 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S Q D IY+V +LT + +SPD +I F S+R Sbjct: 30 AISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNRS 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +++M G + KR++ + + + G I + +F G +F Sbjct: 86 GNFDVFLMNKEGGEPKRLTT-HSTNEYPTTFKDNG-HILYLANVLQDAKDIQFPGTRFMQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + DG + L ++ S G L+++ K ++ Sbjct: 144 VYEISTDGGRPD-LYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDIWLCT 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 L + + + +P W Sbjct: 203 LGKDRSFQKVTTFGGEDRNPVWAA 226 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 39/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A++ DI V +++ + P +S +G+R + Sbjct: 30 AISPDGQTIAFSY--QGDIYTV----PSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------FESDREGK 325 + D++ ++ + +RLT ++ + + F R Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPTTFKDNGHILYLANVLQDAKDIQFPGTR--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 Q+Y + ++G R + S G + + S I Sbjct: 142 MQVYEISTDGG---RPDLYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDI 198 Query: 374 GVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + D S +++ + P W+ G S + ++ G ++ DL G +E I Sbjct: 199 WLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSF--NIFKKDLAGNSEKQI 256 Query: 432 NT 433 T Sbjct: 257 TT 258 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 116/305 (38%), Gaps = 46/305 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + + ++G + + +R+LT L +S + Sbjct: 231 FYYLSEEKGSFN-----IFKKDLAGNSEKQITT--HTTHPVRFLTSDNSGTLC---YSYD 280 Query: 223 QQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + Y + + +V + D + + + + I S NGK + Sbjct: 281 GE--IYTVKEGQKPAKVNIQIVADKIENDVIHRLLTDGATDI---AVSPNGKEVAFITRG 335 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +Y ++ T ++TNT + +SPD +V+ ++REG +Y + + Sbjct: 336 D----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDED 391 Query: 339 KRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 K+ + E + F P++SP G+ +AF + + V+ + Q R +++ Sbjct: 392 KQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRTT---LRVINRKTKQVRTVLD 448 Query: 389 DSNLQAPT-------WSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYAS 438 L + + WSP + + G + L D +G L + Sbjct: 449 GKYLYSYSDGDQHFQWSPDSKWFLVDYISIGGWNNTDIALVKADGSGEVTNLTESGYSDG 508 Query: 439 DPQWV 443 D +WV Sbjct: 509 DAKWV 513 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 42/257 (16%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR------- 238 G + + DG + S + K+ Y Y ED R Sbjct: 138 GTRFMQVYEISTDGGRPDL---YSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSI 194 Query: 239 ---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++L DR+ +++ F P ++++G ++ + +I+ DL N+ + Sbjct: 195 TRDIWLCTLGKDRSFQKVTTFGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEK 254 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---------------- 339 ++T + S +S + + D ++Y ++ K Sbjct: 255 QITTHTTHPVRFLTSDNSGTLCYSYD----GEIYTVKEGQKPAKVNIQIVADKIENDVIH 310 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+ D D SP G +AF + V + R + + +S Sbjct: 311 RLLTDG---ATDIAVSPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFS 363 Query: 399 PSGRSLIFSRKKDGDTG 415 P GRSL++S +++G G Sbjct: 364 PDGRSLVYSAEREGTWG 380 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF+ I + G + R L ++ P WSP G+ + F+ + Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQRIAFASNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINT 433 G+ ++ ++ G + T Sbjct: 85 SGNF--DVFLMNKEGGEPKRLTT 105 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 42/261 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + G R LT P +SP+ Q++A+A+ + V+LM+ + Sbjct: 41 SYQGDIYTVPSSGGKARQLTTHPAH-DTRPVWSPDGQRIAFASNRSGN-FDVFLMN-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI----------YSVDLQSNATERL 297 PKR+ + F NG ++ +A DI Y + + Sbjct: 98 GEPKRLTTHSTNEYPTTFKDNGHILYLANVLQDAKDIQFPGTRFMQVYEISTDGGRPDLY 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLY---------------VMQSNGSDQKRIS 342 ++ NI + S D S++++ D +G E + + + S QK + Sbjct: 158 SSLYMENI--ALSKDGSKLLYN-DYKGYEDPWRKHHQSSITRDIWLCTLGKDRSFQKVTT 214 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW--SPS 400 E +PVW+ G + F I G+ E+ + + + S + Sbjct: 215 FGGE--DRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEKQITTHTTHPV-RFLTSDN 271 Query: 401 GRSLIFSRKKDGDTGSKLYSI 421 +L +S ++Y++ Sbjct: 272 SGTLCYSYD------GEIYTV 286 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ +VA+ ++ R K + ++ ++S + Sbjct: 408 SGQTSFQPLYSPDGNEVAFLENRTTLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPD 467 Query: 269 GKRALI---SVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L+ S+ DI V LT + + + A + D +++ SDR G Sbjct: 468 SKWFLVDYISIGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAG 527 Query: 325 ---------KEQLYVMQSNGS--DQKRISQDKEA 347 + +Y+M +G D+ R+S++++A Sbjct: 528 FRSHGSWGAERDVYIMFFDGEAYDKFRLSKEEQA 561 >gi|154493786|ref|ZP_02033106.1| hypothetical protein PARMER_03129 [Parabacteroides merdae ATCC 43184] gi|154086399|gb|EDN85444.1| hypothetical protein PARMER_03129 [Parabacteroides merdae ATCC 43184] Length = 1083 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 90/257 (35%), Gaps = 37/257 (14%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 L + + P SPN + +A+ DI V ++ + Sbjct: 13 FTANVLAENDPLWMRYPAISPNGETIAFTY--KGDIYTV----PANGGKATQLTTHPAHD 66 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P +S +G + + ++ DI+ +D++ + ++LT ++S D+ I++ + Sbjct: 67 TRPIWSPDGSKIAFASDRNGNFDIFIMDMEGGSPKQLTTHSANEYPETFS-DAKHILYSA 125 Query: 321 ----------DREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------ 363 G+ Q+Y + NG + S S + +GD + + Sbjct: 126 AIQQDAKDSQFPSGQFPQIYRIGINGGRPELYSSLAMESL---ALNKKGDKLLYQDKKGY 182 Query: 364 ------TKFSGEKFAIGVMKKDG--SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 S I + D S +++ + P W+ G S + ++ G Sbjct: 183 EDPWRKHHQSSITRDIWLCTLDREHSFQKITSFKGEDRNPVWATDGSSFYYLSEEKGSF- 241 Query: 416 SKLYSIDLNGRNETLIN 432 ++ DL GRN I Sbjct: 242 -NIFKNDLTGRNSRQIT 257 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 30/203 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S NG+ + + D IY+V +LT + +SPD S+I F SDR Sbjct: 29 PAISPNGETIAFTYKGD----IYTVPANGGKATQLTTHPAHDTRPIWSPDGSKIAFASDR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF- 371 G +++M G K+++ A+ + +S I + ++F +F Sbjct: 85 NGNFDIFIMDMEGGSPKQLTT-HSANEYPETFS-DAKHILYSAAIQQDAKDSQFPSGQFP 142 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF----------SRKKDGDTGSKLYSI 421 I + +G + L +++ + G L++ + ++ Sbjct: 143 QIYRIGINGGRPE-LYSSLAMESLALNKKGDKLLYQDKKGYEDPWRKHHQSSITRDIWLC 201 Query: 422 DLNGRN--ETLINTPAYASDPQW 442 L+ + + + + +P W Sbjct: 202 TLDREHSFQKITSFKGEDRNPVW 224 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 108/304 (35%), Gaps = 44/304 (14%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN +F ++ + + M +R+LT + L + + Sbjct: 231 FYYLSEEKGSFN---IFKNDLTGRNSRQITNHTMHP----VRFLTSDNNGNLC---YGYD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKDEA 281 + Y + +V + I + S S NGK V+ D Sbjct: 281 GE--IYTVKEGTQPKKVDVQIISDKVENDLIHQLKASGATDIAVSPNGKEVAFIVRGD-- 336 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 +Y + T+++TNT +SPD +V+ ++R +Y + K Sbjct: 337 --VYVTSVDYETTKQITNTPQQERDLDFSPDGRSLVYSAERGETWGVYQSSLVRKNDKYF 394 Query: 342 SQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 + +E + F P++SP G +AF + + V+ Q R +++ Sbjct: 395 TYAQELKEEPLVVNSQTSFQPMYSPDGKEVAFLENRTT---LRVINLKNKQVRTVLDGKY 451 Query: 392 LQAPT-------WSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRNE--TLINTPAYASD 439 + WSP + F K G + + + +G E L + ++ Sbjct: 452 NYSYADGDQYYQWSPDSKW--FLAKYIAIGGWNNTDIVLVKADGSGEMTNLTESGYSDNN 509 Query: 440 PQWV 443 +WV Sbjct: 510 AKWV 513 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ D VY+ K+I N FS +G+ + S + Sbjct: 321 AVSPNGKEVAFIVRGD-----VYVTSVDY-ETTKQITNTPQQERDLDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDLQSNATERLTN-----------TLFINISASYSPDSSQIVFESDREGKE 326 + E +Y L + T + YSPD ++ F +R Sbjct: 375 RGETWGVYQSSLVRKNDKYFTYAQELKEEPLVVNSQTSFQPMYSPDGKEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKEASYFD-----PVWSPQGDLIA--FTKFSG-EKFAIGVMKK 378 L V+ + + K + WSP + G I ++K Sbjct: 432 TLRVINLKNKQVRTVLDGKYNYSYADGDQYYQWSPDSKWFLAKYIAIGGWNNTDIVLVKA 491 Query: 379 DGSQE-RLLVEDS-NLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E + W G+++I+S + G +Y + +G Sbjct: 492 DGSGEMTNLTESGYSDNNAKWVLDGKAMIWSSDRAGYRSHGSWGAEDDIYIMFFDGE 548 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 99/319 (31%), Gaps = 92/319 (28%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---- 230 S+I F S+ + + +MD +G + + LT + FS + + + Y+ Sbjct: 76 SKIAFASDRNGN----FDIFIMDMEGGSPKQLTT-HSANEYPETFS-DAKHILYSAAIQQ 129 Query: 231 ------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS--------- 275 + ++Y + R P+ + LA + G + L Sbjct: 130 DAKDSQFPSGQFPQIYRIGINGGR-PELYSSLAMESLA--LNKKGDKLLYQDKKGYEDPW 186 Query: 276 -----VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + + ++D + + +++T+ + + ++ D S + S+ +G ++ Sbjct: 187 RKHHQSSITRDIWLCTLDREH-SFQKITSFKGEDRNPVWATDGSSFYYLSEEKGSFNIFK 245 Query: 331 MQSNGSDQKRISQ-----------DKEASY------------------------------ 349 G + ++I+ D + Sbjct: 246 NDLTGRNSRQITNHTMHPVRFLTSDNNGNLCYGYDGEIYTVKEGTQPKKVDVQIISDKVE 305 Query: 350 ------------FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-T 396 D SP G +AF + V D + + + Sbjct: 306 NDLIHQLKASGATDIAVSPNGKEVAFIVRGD----VYVTSVDYETTKQITNTPQQERDLD 361 Query: 397 WSPSGRSLIFSRKKDGDTG 415 +SP GRSL++S ++ G Sbjct: 362 FSPDGRSLVYSAERGETWG 380 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 65/154 (42%), Gaps = 16/154 (10%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ ++VA+ ++ + R K ++ ++S + Sbjct: 408 NSQTSFQPMYSPDGKEVAFLENRTTLRVINLKNKQVRTVLDGKYNYSYADGDQYYQWSPD 467 Query: 269 GKRAL---ISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L I++ DI V LT + + + +A + D +++ SDR G Sbjct: 468 SKWFLAKYIAIGGWNNTDIVLVKADGSGEMTNLTESGYSDNNAKWVLDGKAMIWSSDRAG 527 Query: 325 K---------EQLYVMQSNGS--DQKRISQDKEA 347 + +Y+M +G D+ R++++++A Sbjct: 528 YRSHGSWGAEDDIYIMFFDGEAYDKFRLTKEEQA 561 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ P SP+G ++ F+ K +Y++ NG T + T PA+ + P W Sbjct: 26 MRYPAISPNGETIAFTYK------GDIYTVPANGGKATQLTTHPAHDTRPIWSP 73 >gi|262198210|ref|YP_003269419.1| peptidase M28 [Haliangium ochraceum DSM 14365] gi|262081557|gb|ACY17526.1| peptidase M28 [Haliangium ochraceum DSM 14365] Length = 944 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 92/267 (34%), Gaps = 42/267 (15%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-------------YDDEDILR 238 + M DG+ + + F P + Y++ + Sbjct: 98 QIMRMPADGSAEPRVVSTGKGRTTCAYFLPGDDDIVYSSTHELGPECPPEADMSQGYVWS 157 Query: 239 VYLMDT----RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +Y D + + L + +D +++Y +D Sbjct: 158 LYDYDIYRAKADGSELVNLTQRDGYDAEATVCAKDGTILFTSDRDGDLELYRMDPNGENV 217 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKE-------------------QLYVMQSNG 335 RLTNT + A +S D SQIV+ + R E ++YV ++G Sbjct: 218 VRLTNTPGYDGGAFFSQDCSQIVWRASRPQGEALADFQRLLGEGLVRPSLLEIYVADADG 277 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKF----SGEKFAIGVMKKDGSQ-ERLLVEDS 390 + ++I+ A+ F P + P G + F+ G +F I + DG+ E++ + Sbjct: 278 QNARQITYLG-AAAFAPYFHPSGKRVLFSTNYPNPRGREFDIWSVNTDGTGLEQITFSEG 336 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSK 417 P +SP G L F+ ++ + Sbjct: 337 FDGFPMFSPDGTKLAFASNRNNSKPGE 363 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 27/234 (11%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 DDI S T E G +S+ V + + DG+ + LT Sbjct: 130 DDIVYSSTHELGPECPPEADMSQGYVWSLYDYDIYRAKADGSELVNLTQRDGYDAEATVC 189 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 + + + + + D D L +Y MD R+ N FS + + + + Sbjct: 190 AKDG-TILFTSDRDGD-LELYRMDPN-GENVVRLTNTPGYDGGAFFSQDCSQIVWRASRP 246 Query: 280 EA-------------------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + ++IY D ++T + + P +++F + Sbjct: 247 QGEALADFQRLLGEGLVRPSLLEIYVADADGQNARQITYLGAAAFAPYFHPSGKRVLFST 306 Query: 321 D----REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + R + ++ + ++G+ ++I+ E P++SP G +AF Sbjct: 307 NYPNPRGREFDIWSVNTDGTGLEQITF-SEGFDGFPMFSPDGTKLAFASNRNNS 359 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 28/167 (16%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGK--EQLYVMQSNGSDQKRISQDKEASYFDPV 353 +LT+ N A +S D +++F+S R +Q+ M ++GS + R+ + Sbjct: 66 QLTDG-GENAEAYWSFDGDELIFQSKRPPYECDQIMRMPADGSAEPRVVSTGKGRTTCAY 124 Query: 354 WSPQGDLIAFTKFSGEK-------------------FAIGVMKKDGSQERLLV--EDSNL 392 + P D I ++ + I K DGS+ L + + Sbjct: 125 FLPGDDDIVYSSTHELGPECPPEADMSQGYVWSLYDYDIYRAKADGSELVNLTQRDGYDA 184 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYAS 438 +A + G ++F+ +DGD +LY +D NG N L NTP Y Sbjct: 185 EATVCAKDGT-ILFTSDRDGD--LELYRMDPNGENVVRLTNTPGYDG 228 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 41/223 (18%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEA--MDIYSVDLQSNATERL-TNTLFINISASYSP 311 +S +G + ++ I + +A R+ + A + P Sbjct: 68 TDGGENAEAYWSFDGDELIFQSKRPPYECDQIMRMPADGSAEPRVVSTGKGRTTCAYFLP 127 Query: 312 DSSQIVFESDREGKEQ-------------------LYVMQSNGSDQKRISQDKEASYFDP 352 IV+ S E + +Y +++GS+ ++Q Sbjct: 128 GDDDIVYSSTHELGPECPPEADMSQGYVWSLYDYDIYRAKADGSELVNLTQRDGYDAEAT 187 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF-SRKK 410 V + G I FT + M +G L +S +++ + + Sbjct: 188 VCAKDGT-ILFTSDRDGDLELYRMDPNGENVVRLTNTPGYDGGAFFSQDCSQIVWRASRP 246 Query: 411 DGD----------------TGSKLYSIDLNGRNETLINTPAYA 437 G+ + ++Y D +G+N I A Sbjct: 247 QGEALADFQRLLGEGLVRPSLLEIYVADADGQNARQITYLGAA 289 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 I + +G+ + + + + V D DG N R +T F P Sbjct: 236 CSQIVWRASRPQGEALADFQRLLGEGLVRPSLLEIYVADADGQNARQIT-YLGAAAFAPY 294 Query: 219 FSPNQQKVAYAT-YDDEDILRVYLMDTRIDRAP-KRIGNFRSMILAPRFSSNGKRALISV 276 F P+ ++V ++T Y + + D ++I P FS +G + + Sbjct: 295 FHPSGKRVLFSTNYPNPRGREFDIWSVNTDGTGLEQITFSEGFDGFPMFSPDGTKLAFAS 354 Query: 277 QKD 279 ++ Sbjct: 355 NRN 357 >gi|299146617|ref|ZP_07039685.1| MdsD protein [Bacteroides sp. 3_1_23] gi|298517108|gb|EFI40989.1| MdsD protein [Bacteroides sp. 3_1_23] Length = 1119 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +S +GK+ Sbjct: 24 WMRDARISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSPDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ D++ + A RLT I ++++PD + F + Sbjct: 78 AFASDRNGNFDLFIMPADGGAARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + G + S Sbjct: 138 TGAMTELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + P ++P G ++ F ++DG + +Y+ LN Sbjct: 195 TRDIWLYNTQTGKHTNLTNRGGEDRNPVYTPDGNAVYFLSERDGGS-FNVYTFPLN 249 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +SPD QI F SDR G L++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSPDGKQIAFASDRNGNFDLFIMPADGGAARRLTY-HSASEIPSAFTPDGKYVFFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + +G++ ++ +K Sbjct: 126 SIQDPASSALFPTGAMTELYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNRGGEDRNPVYTP 225 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y +V + R D F + S +GK+ V+ D ++ Sbjct: 285 YTQKSGARPEKVKVELVRDDEQQLATLKFSQGATSASVSPDGKQIAFIVRGD----VFVT 340 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-----------QSNGS 336 T+++TNT + S++PD+ +V+ S+R G QLY + Sbjct: 341 STDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKISRKEDPNFPNATLI 400 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--- 393 +++ + K P +SP G +AF + + V+ + R + + S Sbjct: 401 EEEVLLPSKTVERTYPQYSPDGKELAFIEDRN---RLMVLNLKTKKVRQVTDGSTWYNTG 457 Query: 394 ---APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS-DPQWV 443 WSP G+ L F + D S + + G T + Y S P+WV Sbjct: 458 GGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGAITNLTNSGYISGAPRWV 512 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ D + + K+I N + A F+ + + + + + Sbjct: 321 SVSPDGKQIAFIVRGD------VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 + +Y+ + N I YSPD ++ F DR Sbjct: 375 RTGNWQLYTAKISRKEDPNFPNATLIEEEVLLPSKTVERTYPQYSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ ++++ FD WSP G + F + + +G++ Sbjct: 432 NRLMVLNLKTKKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSA 491 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G L + AP W G +++F ++ G Sbjct: 492 QGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +SP+ +++A+A+ + + + Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSPDGKQIAFASDRNGNFDLFIM--PADGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 A +R+ + + F+ +GK S ++Y V + TE++ Sbjct: 98 AARRLTYHSASEIPSAFTPDGKYVFFSASIQDPASSALFPTGAMTELYKVPVAGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + + +++ DR+G +++ + ++ Sbjct: 158 LGTPAELV--CFDKTGKNFLYQ-DRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLTNR 214 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +PV++P G+ + F ++ G F + + QE V + Sbjct: 215 G-GEDRNPVYTPDGNAVYFLSERDGGSFNVYTFPLNTPQEVKAVTTFKTHPVRF 267 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQIAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERTYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 429 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q A LTN+ +I+ + + D + I+F+++R G Sbjct: 487 GIVSAQGGAITNLTNSGYISGAPRWVLDGNAILFQTERYG 526 >gi|290955378|ref|YP_003486560.1| hypothetical protein SCAB_8041 [Streptomyces scabiei 87.22] gi|260644904|emb|CBG67990.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1070 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 109/302 (36%), Gaps = 41/302 (13%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 T + + +R + V + + + D R + P SP+ + Sbjct: 318 RFTLVRPEAPARTETIPFRAVLPVDRPRRRTKEYDLGEARVRPARG---IHLPALSPDGR 374 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS--MILAPRFSSNGKRALISVQKDEAM 282 VA+A + ++L T R P+R+ +LAP ++ +G+ + + +D + Sbjct: 375 SVAFAALNA-----LWLARTAGGRPPRRLRQSPPTRWLLAPAWAPDGRSLVYADDRDGLL 429 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI- 341 +Y DL + L + + SPD ++ D G +L V +++ + Sbjct: 430 GVYRHDLATGEETALATGG--RVMPALSPDGRRLA-CLDMAG--RLVVRDLASGEERVLV 484 Query: 342 -SQDKEASYFDPVWSPQGDLIAFTKFS--GEKFA-----IGVMKKDGSQERL-------L 386 P WSP G +A + G +F I V+ +RL Sbjct: 485 EPLGGGGLPGRPSWSPDGRYLALCDRNRLGARFREGYNLIRVVDATTGADRLHAVAPHAS 544 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN----GRNETLINTPAYASDPQW 442 + D P WSP GR + ++ +L + + GR TL PA P W Sbjct: 545 IADRYDSGPVWSPDGRWMAVIV----ESALRLLPVTPDGTPRGRLRTLTTDPAD--HPTW 598 Query: 443 VG 444 G Sbjct: 599 SG 600 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 126/379 (33%), Gaps = 63/379 (16%) Query: 91 ITNPDSIPRFQDWNSLGAQVLVT--GR---VIKEGKDRLR-VEFRLWDVKDRKQIIGKKF 144 + D P W + G ++L+T GR V E R + FR DR + K++ Sbjct: 293 PVDGDLAPVPPRWTARG-ELLLTLDGRFTLVRPEAPARTETIPFRAVLPVDRPRRRTKEY 351 Query: 145 FSSPASWR--KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 A R + H + L V+ N+L + G Sbjct: 352 DLGEARVRPARGIHLPA------------------LSPDGRSVAFAALNALWLARTAGGR 393 Query: 203 IRYLTPSRDQ--ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 L P ++P+ + + YA D + +L VY D R Sbjct: 394 PPRRLRQSPPTRWLLAPAWAPDGRSLVYAD-DRDGLLGVYRHDLATGEETALATGGR--- 449 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL---TNTLFINISASYSPDSSQIV 317 + P S +G+R D A + DL S L + S+SPD + Sbjct: 450 VMPALSPDGRRLAC---LDMAGRLVVRDLASGEERVLVEPLGGGGLPGRPSWSPDGRYLA 506 Query: 318 FE-------SDREGKEQLYVMQSNGSDQKRISQDKEAS-----YFDPVWSPQGDLIAFTK 365 REG + V+ + + + AS PVWSP G +A Sbjct: 507 LCDRNRLGARFREGYNLIRVVDATTGADRLHAVAPHASIADRYDSGPVWSPDGRWMAVI- 565 Query: 366 FSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + DG + R L D PTWS R+L+ +G++L +D Sbjct: 566 -VESALRLLPVTPDGTPRGRLRTLTTDPAD-HPTWSGDSRTLLH------QSGTRLRLVD 617 Query: 423 LNGRNETLINTPAYASDPQ 441 ++G + P + P Sbjct: 618 VSGGRPRTVRVPLDRTRPT 636 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 35/213 (16%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + ++++ + +R T+ + + + ++SPD +++ F S+R Sbjct: 99 PTHSPDGDLVAFCAYQGGGFHLWTMRPDGSELKRRTDGPWDDRAPAWSPDGTRLAFCSER 158 Query: 323 EGK---------EQLYVMQSNGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFT 364 G +++V+ + R++ QD FDP WSP G + F Sbjct: 159 GGDPDRPGGGCPYRVHVLDLATGEITRVTGLPGQDGPLQDGGWEDFDPTWSPDGSRLLFV 218 Query: 365 KF---------SGEKFAIGVMKKDGSQERLL----VEDSNLQAPTWSPSGRSLIFSRKKD 411 + S E + + DG+ + E + + P +P GR L + R Sbjct: 219 RGKVVTTGSTPSVEARTVAAVAADGTGPVTVAHTETEAAQVMTPALAPDGR-LAYLRTTP 277 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G+ ++ + G + A P+W Sbjct: 278 APHGT--CTLVVAGEPVPVDGDLAPVP-PRWTA 307 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 25/184 (13%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + R+ A ++ G + VQ ++S+ LT ++SPD Sbjct: 49 LTFTRATNGAATLATGGDTLIAEVQSG----LWSLPRGGGRAVPLTPAGLEPNRPTHSPD 104 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-- 370 + F + + G L+ M+ +GS+ KR + D P WSP G +AF G Sbjct: 105 GDLVAFCAYQGGGFHLWTMRPDGSELKRRT-DGPWDDRAPAWSPDGTRLAFCSERGGDPD 163 Query: 371 -------FAIGVMKKDGSQERLLV---------EDSNLQ--APTWSPSGRSLIFSRKKDG 412 + + V+ + + +D + PTWSP G L+F R K Sbjct: 164 RPGGGCPYRVHVLDLATGEITRVTGLPGQDGPLQDGGWEDFDPTWSPDGSRLLFVRGKVV 223 Query: 413 DTGS 416 TGS Sbjct: 224 TTGS 227 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 76/206 (36%), Gaps = 34/206 (16%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + R G LTP+ + P SP+ VA+ Y ++ M +R Sbjct: 76 LWSLPRGGGRAVPLTPAGLEPN-RPTHSPDGDLVAFCAY-QGGGFHLWTMRPDGSELKRR 133 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEA---------MDIYSVDLQSNATERLT----- 298 + AP +S +G R ++ ++ +DL + R+T Sbjct: 134 -TDGPWDDRAPAWSPDGTRLAFCSERGGDPDRPGGGCPYRVHVLDLATGEITRVTGLPGQ 192 Query: 299 -----NTLFINISASYSPDSSQIVFESDR---EGK------EQLYVMQSNGSDQKRI--S 342 + + + ++SPD S+++F + G + + ++G+ + + Sbjct: 193 DGPLQDGGWEDFDPTWSPDGSRLLFVRGKVVTTGSTPSVEARTVAAVAADGTGPVTVAHT 252 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSG 368 + + A P +P G +A+ + + Sbjct: 253 ETEAAQVMTPALAPDGR-LAYLRTTP 277 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 373 IGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETL 430 + + + G + L PT SP G + F + G G L+++ +G + Sbjct: 76 LWSLPRGGGRAVPLTPAGLEPNRPTHSPDGDLVAFCAYQGG--GFHLWTMRPDGSELKRR 133 Query: 431 INTPAYASDPQWVG 444 + P P W Sbjct: 134 TDGPWDDRAPAWSP 147 >gi|224023742|ref|ZP_03642108.1| hypothetical protein BACCOPRO_00458 [Bacteroides coprophilus DSM 18228] gi|224016964|gb|EEF74976.1| hypothetical protein BACCOPRO_00458 [Bacteroides coprophilus DSM 18228] Length = 1088 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 31/205 (15%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ + D IY+V +LT + +SPDS +I F S+R+ Sbjct: 30 AISPDGQTIAFCYKGD----IYTVPANGGKATQLTTNAAHDTHPIWSPDSKKIAFASNRQ 85 Query: 324 GKEQLYVMQSNGSDQKRISQ-----------DKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +Y++ G +R++ D E + P + F SG+ Sbjct: 86 GSMDIYIIDKEGGTPQRLTTHSANEFPVTFKDAEHILYLSSLMPDAADMTF--PSGQFPQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + +G + L ++ ++S G+SL++ +K ++ Sbjct: 144 VYEISTEGGRPT-LFSSLPMEDISFSKDGKSLLYHDRKGYEDAWRKHHTSSITRDIWMCQ 202 Query: 423 LNGRNET---LINTPAYASDPQWVG 444 LNG +T L + P W Sbjct: 203 LNGNEKTYRKLTSFRGEDRTPIWSA 227 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 40/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A+ DI V ++ + P +S + K+ + Sbjct: 30 AISPDGQTIAFCY--KGDIYTV----PANGGKATQLTTNAAHDTHPIWSPDSKKIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASY------------SPDSSQIVFESDREGK 325 + +MDIY +D + +RLT ++ PD++ + F S + Sbjct: 84 RQGSMDIYIIDKEGGTPQRLTTHSANEFPVTFKDAEHILYLSSLMPDAADMTFPSGQ--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------------FAI 373 Q+Y + + G R + D +S G + + G + I Sbjct: 142 PQVYEISTEGG---RPTLFSSLPMEDISFSKDGKSLLYHDRKGYEDAWRKHHTSSITRDI 198 Query: 374 GVMKKDGSQ--ERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + +G++ R L + P WS +S + + G ++ +L+G NE Sbjct: 199 WMCQLNGNEKTYRKLTSFRGEDRTPIWSADSQSFYYLSESKGSF--NVFKRNLDGSNEKQ 256 Query: 431 IN 432 + Sbjct: 257 LT 258 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 117/354 (33%), Gaps = 52/354 (14%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISD--------------DIYQSITGEKGDFNSRILF 179 KD K ++ +WRK H S Y+ +T +G+ + I Sbjct: 169 KDGKSLLYHDRKGYEDAWRK--HHTSSITRDIWMCQLNGNEKTYRKLTSFRGEDRTPIWS 226 Query: 180 VSESV----VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ------QKVAYA 229 ++ + DG+N + LT + + N Y Sbjct: 227 ADSQSFYYLSESKGSFNVFKRNLDGSNEKQLTQHTKHPVRFLSAASNGMLCYGYDGEIYT 286 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + E +V + I R S S +GK + D ++ Sbjct: 287 VKEGEKPHKVEISIVADKNDKDLIRQVRTSGATEIAVSPSGKEVAFILHGD----VFVTS 342 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE-- 346 ++ N T+++TNT + S++PD + + S+REG Q+Y D K + E Sbjct: 343 VEYNTTKQITNTPEQERNLSFAPDGRSLAYSSEREGLWQVYQSSLTNKDDKLFTYANEIK 402 Query: 347 --------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK------KDGSQERLLVEDSNL 392 A+ F P +SP G IAF + + + DG E + Sbjct: 403 EERLTNSTAASFQPQYSPDGKEIAFLENRTTLRILNLKDKSVRTAMDGKYEYSYTDGDQW 462 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYASDPQWV 443 WSP R L+ +G + L + NG L + + +WV Sbjct: 463 FE--WSPDSRWLLSGYIGNGGWNNSDVALVNASGNGEIHNLTQSGYSDGNAKWV 514 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 119/356 (33%), Gaps = 95/356 (26%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR-----------DQILFEPRFSPN 222 + +I F S S + ++D++G + LT + IL+ P+ Sbjct: 75 SKKIAFASNRQGS----MDIYIIDKEGGTPQRLTTHSANEFPVTFKDAEHILYLSSLMPD 130 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-------- 274 + + + +VY + T R P + ++ FS +GK L Sbjct: 131 AADMTFPS---GQFPQVYEISTEGGR-PTLFSSLPMEDIS--FSKDGKSLLYHDRKGYED 184 Query: 275 ------SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + + + ++ +LT+ + + +S DS + S+ +G + Sbjct: 185 AWRKHHTSSITRDIWMCQLNGNEKTYRKLTSFRGEDRTPIWSADSQSFYYLSESKGSFNV 244 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDL---------------------IAFTKFS 367 + +GS++K+++Q + + G L I+ Sbjct: 245 FKRNLDGSNEKQLTQHTKHPVRFLSAASNGMLCYGYDGEIYTVKEGEKPHKVEISIVADK 304 Query: 368 GEKFAIGVMKKDGSQE-----------------------------RLLVEDSNLQAPTWS 398 +K I ++ G+ E ++ + +++ Sbjct: 305 NDKDLIRQVRTSGATEIAVSPSGKEVAFILHGDVFVTSVEYNTTKQITNTPEQERNLSFA 364 Query: 399 PSGRSLIFSRKKDG----------DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P GRSL +S +++G + KL++ + E L N+ A + PQ+ Sbjct: 365 PDGRSLAYSSEREGLWQVYQSSLTNKDDKLFTYANEIKEERLTNSTAASFQPQYSP 420 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 32/225 (14%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + +G LT + P +SP+ +K+A+A+ + +Y++D + Sbjct: 42 YKGDIYTVPANGGKATQLTTNAAH-DTHPIWSPDSKKIAFASNRQGS-MDIYIID-KEGG 98 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 P+R+ + F + + L + +Y + + Sbjct: 99 TPQRLTTHSANEFPVTF-KDAEHILYLSSLMPDAADMTFPSGQFPQVYEISTEGGRPTLF 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQK-RISQ 343 ++ +IS +S D +++ DR+G +++ Q NG+++ R Sbjct: 158 SSLPMEDIS--FSKDGKSLLYH-DRKGYEDAWRKHHTSSITRDIWMCQLNGNEKTYRKLT 214 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 P+WS + S F + DGS E+ L + Sbjct: 215 SFRGEDRTPIWSADSQSFYYLSESKGSFNVFKRNLDGSNEKQLTQ 259 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 7/99 (7%) Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSG 401 QD SP G IAF I + +G + L + ++ P WSP Sbjct: 20 QDNPLWMRYCAISPDGQTIAFCYKGD----IYTVPANGGKATQLTTNAAHDTHPIWSPDS 75 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 + + F+ + G +Y ID G + T + P Sbjct: 76 KKIAFASNRQGSM--DIYIIDKEGGTPQRLTTHSANEFP 112 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + F+P++SP+ +++A+ IL + R K ++ + Sbjct: 406 LTNSTAASFQPQYSPDGKEIAFLENRTTLRILNLKDKSVRTAMDGKYEYSYTDGDQWFEW 465 Query: 266 SSNGKRALISVQKDE---AMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + + L + D+ V+ LT + + + +A + +++ESD Sbjct: 466 SPDSRWLLSGYIGNGGWNNSDVALVNASGNGEIHNLTQSGYSDGNAKWVLGGKAMIWESD 525 Query: 322 REG 324 R G Sbjct: 526 RAG 528 >gi|148655245|ref|YP_001275450.1| peptidase S41 [Roseiflexus sp. RS-1] gi|148567355|gb|ABQ89500.1| peptidase S41 [Roseiflexus sp. RS-1] Length = 1104 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 15/177 (8%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D++ V RLT S + SPD + + F EG +++VM + G + +R Sbjct: 22 EDDLWLVAASGGVARRLTANPGSVQSPALSPDGTLLAFVGRDEGPGEVFVMLAVGGEARR 81 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPT 396 ++ E + WS G I F + F+ + + DG + RLL + + Sbjct: 82 LTFLGE-TMRVCGWSRNGRDILFASSAHSPFSRSPLLYAVAADGGEPRLLPTGPAVHV-S 139 Query: 397 WSPSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + P G +I + R + G TG D +G LI+ P + P WVG Sbjct: 140 YGPDGGMVIGRNESDPARWKRYRGGRTGDVWIDPDGSGEWRRLISLPGNIAIPLWVG 196 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 22/205 (10%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + +R+ + +P S +G + + +++ + RLT Sbjct: 26 WLVAASGGVARRLTANPGSVQSPALSPDGTLLAFVGRDEGPGEVFVMLAVGGEARRLTFL 85 Query: 301 LFINISASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +S + I+F S LY + ++G + + + + P Sbjct: 86 GETMRVCGWSRNGRDILFASSAHSPFSRSPLLYAVAADGGEPRLL---PTGPAVHVSYGP 142 Query: 357 QGDLIA---------FTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLI 405 G ++ + ++ G + + DGS E RL+ N+ P W G + Sbjct: 143 DGGMVIGRNESDPARWKRYRGGRTGDVWIDPDGSGEWRRLISLPGNIAIPLWV--GDRIY 200 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETL 430 F +G LYS G + Sbjct: 201 FVSDHEG--VGNLYSCLPTGEDLQR 223 Score = 66.6 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 23/239 (9%) Query: 162 IYQSITGEKGDFNSRILFVSES----VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 + + +T G S L + V + VM G R LT + + Sbjct: 34 VARRLTANPGSVQSPALSPDGTLLAFVGRDEGPGEVFVMLAVGGEARRLTFLGETMRVC- 92 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL---- 273 +S N + + +A+ R L+ + + + +G + Sbjct: 93 GWSRNGRDILFASSAHSPFSRSPLLYAVAADGGEPRLLPTGPAVHVSYGPDGGMVIGRNE 152 Query: 274 -----ISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 + +D RL + + +I F SD EG Sbjct: 153 SDPARWKRYRGGRTGDVWIDPDGSGEWRRLISLPGNIAIPLWV--GDRIYFVSDHEGVGN 210 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 LY G D +R + +E P S G I + + + + + R + Sbjct: 211 LYSCLPTGEDLQRHTWHREYYARFP--STDGRRIVYHAGAD----LYLFDPATNGSRKI 263 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 49/347 (14%), Positives = 100/347 (28%), Gaps = 90/347 (25%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---- 230 RI FVS+ G L G +++ T R+ P S + +++ Y Sbjct: 197 DRIYFVSDHEGVGN----LYSCLPTGEDLQRHTWHREYYARFP--STDGRRIVYHAGADL 250 Query: 231 ------YDDEDILRVYLMDTRIDRAPKRI-----------------------------GN 255 + + + L R R + + GN Sbjct: 251 YLFDPATNGSRKIEIELHSPRTQRKRRFVDPARFLQSVALHPEGHSLVAVVRGKPFTFGN 310 Query: 256 FRSMILA-----------PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + +L + +G+R ++ + + + T + Sbjct: 311 WEGAVLQYGDPGAVRYRLADWLPDGRRIVVVSDAAGEEMLEVHPVTLGNGQVAPRTDVAD 370 Query: 305 ISA--------------------------SYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + + SP + + ++R +L ++ N Sbjct: 371 VQPGTGSSTLLFEEPVRLDGLDIGRPLTLAVSPKAPLVALANNR---NELLLVDLNDRSV 427 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVEDSN-LQAPT 396 + + + + AS WSP G +A+ + E+ I + + + ++P Sbjct: 428 RLLDRSRYASMPGIAWSPDGRWLAYGFWETEQTSVIKLCEIATGTITPVTRPVLVDRSPA 487 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLN---GRNETLINTPAYASDP 440 + P G+ L F +D D DL G L+ A P Sbjct: 488 FDPEGKYLYFISYRDLDPVRDDIHFDLGFPRGARPFLVTLRADLRSP 534 >gi|262196570|ref|YP_003267779.1| hypothetical protein Hoch_3384 [Haliangium ochraceum DSM 14365] gi|262079917|gb|ACY15886.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365] Length = 398 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 26/215 (12%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEA----MDIYSVDLQ-SNATERLTNTLFINI 305 RI +P +S +G+ + + + ++ V + RLT+ F + Sbjct: 94 TRIAQVPVRDNSPSWSPDGRWIVFASSRGREDMMQTSLWLVAARLDAQPRRLTSGDFEDR 153 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQ----------SNGSDQKRISQDKEASYFDPVWS 355 ++S D S +VF S+R G ++ + + G+ + I+ ++ A F P + Sbjct: 154 DPAWSADGSAVVFSSNRGGSFAIWRQELSMSDYGWPIAAGAPSQLIASERAA--FHPAPA 211 Query: 356 PQGDLIAFTKFS--GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS---RKK 410 P G IA+T+ I + + + L E + P WSP GR L F+ ++ Sbjct: 212 PDGSAIAYTEADLESGASEIWLWSA--GERQRLSEGPSDSTPAWSPDGRRLAFAGLVERE 269 Query: 411 DGDTGSKLYSIDLNGRNET-LINTP-AYASDPQWV 443 L++++ +G LI P A + P W Sbjct: 270 GQPPDVDLFTMNADGSGRAPLIAEPLALQTHPVWS 304 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 32/238 (13%) Query: 217 PRFSPNQQKVAYATYDDEDIL---RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 P +SP+ + + +A+ + + ++L+ R+D P+R+ + P +S++G + Sbjct: 106 PSWSPDGRWIVFASSRGREDMMQTSLWLVAARLDAQPRRLTSGDFEDRDPAWSADGSAVV 165 Query: 274 ISVQKDEAMDIYSV---------DLQSNATERLTNTLFINISASYSPDSSQIVFE-SD-R 322 S + + I+ + + A +L + + +PD S I + +D Sbjct: 166 FSSNRGGSFAIWRQELSMSDYGWPIAAGAPSQLIASERAAFHPAPAPDGSAIAYTEADLE 225 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKFAIGVMK 377 G ++++ + +++R+S+ S P WSP G +AF + M Sbjct: 226 SGASEIWLWSA--GERQRLSEGP--SDSTPAWSPDGRRLAFAGLVEREGQPPDVDLFTMN 281 Query: 378 KDGSQERLLVEDSNL--QAPTWSPSGRSL-IFSRKKDGDTGSKL------YSIDLNGR 426 DGS L+ + P WS GR L S + D+G + +ID GR Sbjct: 282 ADGSGRAPLIAEPLALQTHPVWSRDGRHLFATSLYRSVDSGKPILSSITFVAIDAEGR 339 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 16/167 (9%) Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----LYVMQSNGSDQKRISQDKEA 347 R+ + S S+SPD IVF S R ++ L+++ + Q R + Sbjct: 91 GDLTRIAQVPVRDNSPSWSPDGRWIVFASSRGREDMMQTSLWLVAARLDAQPRRLTSGDF 150 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD----------GSQERLLVEDSNLQAPTW 397 DP WS G + F+ G FAI + G+ +L+ + P Sbjct: 151 EDRDPAWSADGSAVVFSSNRGGSFAIWRQELSMSDYGWPIAAGAPSQLIASERAAFHPAP 210 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 +P G ++ ++ S+++ G + L P+ ++ P W Sbjct: 211 APDGSAIAYTEADLESGASEIWLWSA-GERQRLSEGPSDST-PAWSP 255 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 20/243 (8%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR-ILFVSESVVSGIIKNSL 193 R ++ G+ F + R+ T + + R I+F S +++ SL Sbjct: 72 QRARLGGRLVFIDESGVRRGDLTRIAQVPVRDNSPSWSPDGRWIVFASSRGREDMMQTSL 131 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI--------LRVYLMDTR 245 ++ S D +P +S + V +++ + Y Sbjct: 132 WLVAARLDAQPRRLTSGDFEDRDPAWSADGSAVVFSSNRGGSFAIWRQELSMSDYGWPIA 191 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--KDEAMDIYSVDLQSNATERLTNTLFI 303 + I + R P + +G + + A +I+ + +RL+ Sbjct: 192 AGAPSQLIASER-AAFHPAPAPDGSAIAYTEADLESGASEIWL--WSAGERQRLSEGPS- 247 Query: 304 NISASYSPDSSQIVFES--DREGKE---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + + ++SPD ++ F +REG+ L+ M ++GS + + + A PVWS G Sbjct: 248 DSTPAWSPDGRRLAFAGLVEREGQPPDVDLFTMNADGSGRAPLIAEPLALQTHPVWSRDG 307 Query: 359 DLI 361 + Sbjct: 308 RHL 310 >gi|157273491|gb|ABV27390.1| prolyl oligopeptidase family protein [Candidatus Chloracidobacterium thermophilum] Length = 691 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 62/244 (25%) Query: 261 LAPRFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 A S +GK + + +++ + +L + + +SPDS Sbjct: 49 TAVAVSPDGKYLAYTQGVPDKAANRIQYELWVMPTGGGPAHQLVSGPYSATDPCWSPDSQ 108 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--------- 365 I F S+R+GK Q++ + NG + ++++ D + +W+ G + F Sbjct: 109 TIAFVSNRDGKAQIWTVHRNGGEPRKVT-DFFTNVSGILWTADGRHLIFVAEVYPECPDE 167 Query: 366 -------------------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G + I V+ +G + L + A Sbjct: 168 DCNRRKYAAVEASKVKAYIADRLLYRHWDSFKGGRRTHIFVVPVEGGVAKDLT-PGDYDA 226 Query: 395 PTW---------SPSGRSLIFSRKKDGD----TGSKLYSIDLNGRNETLINT-PAYASDP 440 P + SP G+ L F+R D D T + ++ + L G I+T P + P Sbjct: 227 PPFSLSGRDYDVSPDGKELAFARNTDRDEAISTNNDIFIVPLGGGEPKRISTSPGSDTHP 286 Query: 441 QWVG 444 ++ Sbjct: 287 RYSP 290 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 110/315 (34%), Gaps = 68/315 (21%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + I+ L VM G L S +P +SP+ Q +A+ + D +++ + R Sbjct: 71 ANRIQYELWVMPTGGGPAHQLV-SGPYSATDPCWSPDSQTIAFVSNRDGKA-QIWTVH-R 127 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALI------------------------------- 274 P+++ +F + + ++++G+ + Sbjct: 128 NGGEPRKVTDFFTNVSGILWTADGRHLIFVAEVYPECPDEDCNRRKYAAVEASKVKAYIA 187 Query: 275 ---------SVQKDEAMDIYSVDLQSNATERLTNTLFINISAS--------YSPDSSQIV 317 S + I+ V ++ + LT + SPD ++ Sbjct: 188 DRLLYRHWDSFKGGRRTHIFVVPVEGGVAKDLTPG-DYDAPPFSLSGRDYDVSPDGKELA 246 Query: 318 F--ESDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 F +DR+ ++++ G + KRIS S P +SP G IA+ F Sbjct: 247 FARNTDRDEAISTNNDIFIVPLGGGEPKRIST-SPGSDTHPRYSPDGKYIAWLSQERAMF 305 Query: 372 A-----IGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + ++ + R L + D + WSP ++L + G ++++ L Sbjct: 306 ESDKKQVILYERATGKLRRLSDKVDISFDELAWSPDSQTLFLTGDHRGQVP--VFTLTLA 363 Query: 425 GRNETLINTPAYASD 439 G + ++ + Sbjct: 364 GNDVRMLVEQGQNGN 378 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 12/179 (6%) Query: 265 FSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S +GK + D DI+ V L +R++ + + YSPD I + Sbjct: 238 VSPDGKELAFARNTDRDEAISTNNDIFIVPLGGGEPKRISTSPGSDTHPRYSPDGKYIAW 297 Query: 319 ESDR-----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 S K+Q+ + + +R+S + S+ + WSP + T + + Sbjct: 298 LSQERAMFESDKKQVILYERATGKLRRLSDKVDISFDELAWSPDSQTLFLTGDHRGQVPV 357 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + G+ R+LVE + +P G++L F++ +++S+ G I Sbjct: 358 FTLTLAGNDVRMLVEQGQNGNLSVAPDGKTLYFTQSTLTRPN-EIFSVATTGGTPKQIT 415 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 82/289 (28%), Gaps = 62/289 (21%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRAL 273 SP+ + +AY + + + ++ + P +S + + Sbjct: 52 AVSPDGKYLAYTQGVPDKAANRIQYELWVMPTGGGPAHQLVSGPYSATDPCWSPDSQTIA 111 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-------------- 319 +D I++V ++T+ ++ D ++F Sbjct: 112 FVSNRDGKAQIWTVHRNGGEPRKVTDFFTNVSGILWTADGRHLIFVAEVYPECPDEDCNR 171 Query: 320 ---------------SDR-----------EGKEQLYVMQSNGSDQKRISQDKEA------ 347 +DR + ++V+ G K ++ Sbjct: 172 RKYAAVEASKVKAYIADRLLYRHWDSFKGGRRTHIFVVPVEGGVAKDLTPGDYDAPPFSL 231 Query: 348 SYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPS 400 S D SP G +AF + + I ++ G + R+ + P +SP Sbjct: 232 SGRDYDVSPDGKELAFARNTDRDEAISTNNDIFIVPLGGGEPKRISTSPGSDTHPRYSPD 291 Query: 401 GRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYASDP--QWVG 444 G+ + + ++ S ++ + ++ S W Sbjct: 292 GKYIAWLSQERAMFESDKKQVILYERATGKLRRLSDKVDISFDELAWSP 340 Score = 70.0 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 69/172 (40%), Gaps = 7/172 (4%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD---DEDILRVYLMDT 244 N + ++ G + ++ S PR+SP+ + +A+ + + E + ++ Sbjct: 258 STNNDIFIVPLGGGEPKRISTS-PGSDTHPRYSPDGKYIAWLSQERAMFESDKKQVILYE 316 Query: 245 RIDRAPKRIGNFRSMILAP-RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 R +R+ + + +S + + ++ + ++++ L N L Sbjct: 317 RATGKLRRLSDKVDISFDELAWSPDSQTLFLTGDHRGQVPVFTLTLAGNDVRMLV-EQGQ 375 Query: 304 NISASYSPDSSQIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 N + S +PD + F S +++ + + G K+I++ EA + + Sbjct: 376 NGNLSVAPDGKTLYFTQSTLTRPNEIFSVATTGGTPKQITRVNEAFLAEIAF 427 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 22/102 (21%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 + ++ WS A+ F D + R L A SP G+ L ++ Sbjct: 21 AAWNVTWSA-----AYAASRPMSFD------DLVKLRRLT------AVAVSPDGKYLAYT 63 Query: 408 R----KKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 + K +L+ + G L++ P A+DP W Sbjct: 64 QGVPDKAANRIQYELWVMPTGGGPAHQLVSGPYSATDPCWSP 105 >gi|149182429|ref|ZP_01860905.1| YuxL [Bacillus sp. SG-1] gi|148849892|gb|EDL64066.1| YuxL [Bacillus sp. SG-1] Length = 651 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 83/239 (34%), Gaps = 49/239 (20%) Query: 214 LFEPRFSPNQQKVAYATYDD-----EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + +P+ SPN ++ AY + + I +Y +D + ++ + ++ +PR+S + Sbjct: 12 VSDPKISPNGEEAAYVITEMDEETNKYISNLYHLDIKTGKSTQW-TFGKNRNTSPRWSPD 70 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--------- 319 G + + + + ++ + +LT +SP ++ F Sbjct: 71 GGKVVFVSDRSDKSQLFLLLRSGGEARQLTFCPNGASQPVWSPCGKKVAFSTALMEGETL 130 Query: 320 ---------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 SD G + + V+ D K I+ + E Y Sbjct: 131 TEGKEEDKHPQPLEVTTMKYKSDDSGFFNGKRNHIAVIDVETLDMKLIT-EGEIDYSLQS 189 Query: 354 WSPQGDLIAF----TKFSGEKF--AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLI 405 WSP G IA+ + F + + + S ER + + WSP S+ Sbjct: 190 WSPNGRYIAYGADKSADLDNSFLSDLFLYDVEESTERKVTSGTGYFGSAAWSPDSSSIA 248 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 102/309 (33%), Gaps = 77/309 (24%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---- 230 +++FVS+ K+ L ++ R G R LT + +P +SP +KVA++T Sbjct: 72 GKVVFVSDR----SDKSQLFLLLRSGGEARQLTFCPNG-ASQPVWSPCGKKVAFSTALME 126 Query: 231 ------------------------------YDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + + + ++D K I Sbjct: 127 GETLTEGKEEDKHPQPLEVTTMKYKSDDSGFFNGKRNHIAVIDVETLDM-KLITEGEIDY 185 Query: 261 LAPRFSSNGKRALI------SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +S NG+ + D++ D++ + ++T+ SA++SPDSS Sbjct: 186 SLQSWSPNGRYIAYGADKSADLDNSFLSDLFLYDVEESTERKVTSGTGYFGSAAWSPDSS 245 Query: 315 QIVFESDREGKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 I + +++ + ++ + + SP GD + F Sbjct: 246 SIAILGHESEYQNATLTKVWLYEMETGSLSCMTSELD--------SPAGDFMV-IDFQQG 296 Query: 370 KFAIGVM-KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL------YSID 422 GV D L D +G ++++ +DG L Y D Sbjct: 297 VSNPGVQWASDNDSFYFLTSD----------NGNTVLYYGNRDGSLYPALLDNQHVYGFD 346 Query: 423 LNGRNETLI 431 L+ + + I Sbjct: 347 LDRKQQKAI 355 >gi|257455247|ref|ZP_05620482.1| putative TolB periplasmic receptor [Enhydrobacter aerosaccus SK60] gi|257447209|gb|EEV22217.1| putative TolB periplasmic receptor [Enhydrobacter aerosaccus SK60] Length = 335 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 93/240 (38%), Gaps = 9/240 (3%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + +++F+ + + L DG++ + L I+ S ++ + Sbjct: 56 SGKLIFIYLTGFGENRQAQLIETQIDGSDPKTLYKVNGTIMSLSA-SRLGDRLIFTVQAG 114 Query: 234 EDILRVYLMDTRIDRAPKR--IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 +V ++D + + + R+ + S +G++ L++ + +I+ D Sbjct: 115 NSYPQVVILDRATLQVTEISAVSGRRTHNFSGAISPDGRQLLLANSQMGNPEIFLTDSSG 174 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASY 349 N ++LT+ I+++ + PD +F SD+ + QLY ++ + + Sbjct: 175 NVKQQLTHQPAIDLAPVWLPDGQSFIFTSDKAKFLQPQLYQYYFAKQQFLPLNLPGKTNA 234 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 SP G LI + + + + + + + + +SP G L++S K Sbjct: 235 IA-RISPTGRLITYVSDNSQG---RLADMATKKSIAINNEGLAEPANFSPDGNYLLYSAK 290 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 7/174 (4%) Query: 269 GKRALISVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 GK I + + + + + L +S S S +++F Sbjct: 57 GKLIFIYLTGFGENRQAQLIETQIDGSDPKTLYKVNGTIMSLSASRLGDRLIFTVQAGNS 116 Query: 326 -EQLYVMQSNGSDQKRIS--QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 Q+ ++ IS + F SP G + I + G+ Sbjct: 117 YPQVVILDRATLQVTEISAVSGRRTHNFSGAISPDGRQLLLANSQMGNPEIFLTDSSGNV 176 Query: 383 ERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 ++ L + AP W P G+S IF+ K +LY + +N P Sbjct: 177 KQQLTHQPAIDLAPVWLPDGQSFIFTSDKAKFLQPQLYQYYFAKQQFLPLNLPG 230 >gi|299138250|ref|ZP_07031429.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] gi|298599496|gb|EFI55655.1| WD40 domain protein beta Propeller [Acidobacterium sp. MP5ACTX8] Length = 321 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 88/241 (36%), Gaps = 22/241 (9%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 +++ + V D + + + D I P +SP+ + + + L Sbjct: 24 GAEAPMRSRIYVYDLRTHSSKLIFT-ADTIWEAPNWSPDGKYLISNSGGMIHKLNFKNDG 82 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE--AMDIYSVDLQSNATERLTNTL 301 T + +I S +GK S + E ++Y + +++TN Sbjct: 83 TVEESEKLKIPEDYHCNNDKALSPDGKWLAFSASQGEEHGSEVYLAHADGSEVKQMTN-- 140 Query: 302 FINISAS----YSPDSSQIVFESDR--EGKE-QLYVMQSNGSDQKRISQDKEASYFDPVW 354 +S S +SPDS I + + R GK+ +Y + G ++ R++ P + Sbjct: 141 ---VSPSYFHGWSPDSKTIAYVAQRPVGGKQYDIYGQPATGGEETRLTS-SPGQDDGPDY 196 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQ------ERLLVEDSNLQAPTWSPSGRSLIFSR 408 SP G I +K + G+ ER++ + P SP G+ L++ Sbjct: 197 SPDGKWIYINSNRSDKEEVWRFPATGAGENDAKAERIVSDSMQDWFPHISPDGKRLVYIA 256 Query: 409 K 409 Sbjct: 257 Y 257 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 27/218 (12%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ + +A++ E+ + K++ N +S + K Q Sbjct: 103 ALSPDGKWLAFSASQGEEHGSEVYLAHADGSEVKQMTNVSPSYFH-GWSPDSKTIAYVAQ 161 Query: 278 K---DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + + DIY RLT++ + YSPD I S+R KE+++ + Sbjct: 162 RPVGGKQYDIYGQPATGGEETRLTSSPGQDDGPDYSPDGKWIYINSNRSDKEEVWRFPAT 221 Query: 335 GSD-----QKRISQDKEASYFDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKD--- 379 G+ +RI D +F P SP G + + T I D Sbjct: 222 GAGENDAKAERIVSDSMQDWF-PHISPDGKRLVYIAYPADVTTHDPRNVHIVFKLVDIHN 280 Query: 380 ---GSQERLLVE----DSNLQAPTWSPSGRSLIFSRKK 410 +++LVE ++ +W+P + + Sbjct: 281 NKVSKSQKVLVEASGGQGSMNVNSWAPDSMRFAYVTYE 318 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%) Query: 226 VAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 +A+A+ R+Y+ D R K I ++ AP +S +GK IS Sbjct: 16 LAFASMAHGAEAPMRSRIYVYDLRTHS-SKLIFTADTIWEAPNWSPDGKYL-ISNSGGMI 73 Query: 282 MDIYSVDLQSNATE----RLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNG 335 + + E ++ N + SPD + F + + ++Y+ ++G Sbjct: 74 HKLNFKN-DGTVEESEKLKIPEDYHCNNDKALSPDGKWLAFSASQGEEHGSEVYLAHADG 132 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLLVED-SN 391 S+ K+++ + + WSP IA+ G+++ I G +E L Sbjct: 133 SEVKQMTNVSPSYFHG--WSPDSKTIAYVAQRPVGGKQYDIYGQPATGGEETRLTSSPGQ 190 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 P +SP G+ + + + +++ G E Sbjct: 191 DDGPDYSPDGKWIYINSNRSDK--EEVWRFPATGAGE 225 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 13/140 (9%) Query: 315 QIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 + F S G + ++YV K I + + P WSP G + SG Sbjct: 15 SLAFASMAHGAEAPMRSRIYVYDLRTHSSKLI-FTADTIWEAPNWSPDGKYL--ISNSGG 71 Query: 370 KFAIGVMKKDGSQER----LLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 K DG+ E + ED + SP G+ L FS + + GS++Y + Sbjct: 72 MIHKLNFKNDGTVEESEKLKIPEDYHCNNDKALSPDGKWLAFSASQGEEHGSEVYLAHAD 131 Query: 425 GRNETLINTPAYASDPQWVG 444 G + + + W Sbjct: 132 GSEVKQMTNVSPSYFHGWSP 151 >gi|298376888|ref|ZP_06986842.1| MdsD protein [Bacteroides sp. 3_1_19] gi|298265872|gb|EFI07531.1| MdsD protein [Bacteroides sp. 3_1_19] Length = 1076 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S Q D IY+V +LT + +SPD +I F S+R Sbjct: 30 AISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNRS 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +++M G + KR++ + + + G I + +F G +F Sbjct: 86 GNFDVFLMNKEGGEPKRLTT-HSTNEYPTTFKDNG-HILYLANILQDAKDIQFPGTRFMQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + DG + L ++ S G L+++ K ++ Sbjct: 144 VYEISTDGGRPD-LYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDIWLCT 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 L + + +P W Sbjct: 203 LGKDRSFRKVTTFGGEDRNPVWAA 226 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 39/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ Q +A++ DI V +++ + P +S +G++ + Sbjct: 30 AISPDGQTIAFSY--QGDIYTV----PSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------FESDREGK 325 + D++ ++ + +RLT ++ + + F R Sbjct: 84 RSGNFDVFLMNKEGGEPKRLTTHSTNEYPTTFKDNGHILYLANILQDAKDIQFPGTR--F 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 Q+Y + ++G R + S G + + S I Sbjct: 142 MQVYEISTDGG---RPDLYSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSITRDI 198 Query: 374 GVMKK--DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + D S ++ + P W+ G S + ++ G ++ DL G +E I Sbjct: 199 WLCTLGKDRSFRKVTTFGGEDRNPVWAADGASFYYLSEEKGSF--NIFKKDLAGNSEKQI 256 Query: 432 NT 433 T Sbjct: 257 TT 258 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 116/305 (38%), Gaps = 46/305 (15%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + + ++G + + +R+LT L +S + Sbjct: 231 FYYLSEEKGSFN-----IFKKDLAGNSEKQITT--HTTHPVRFLTSDNSGTLC---YSYD 280 Query: 223 QQKVAYATYDDEDILRVYLM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + Y + + +V + D + + + + I S NGK + Sbjct: 281 GE--IYTVKEGQKPAKVNIQIVADKIENDVIHRLLTDGATDI---AVSPNGKEVAFITRG 335 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D +Y ++ T ++TNT + +SPD +V+ ++REG +Y + + Sbjct: 336 D----VYVTSIEYETTRQITNTPQQERNIDFSPDGRSLVYSAEREGTWGIYESKLTRDED 391 Query: 339 KRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 K+ + E + F P++SP G+ +AF + + V+ + Q R +++ Sbjct: 392 KQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRTT---LRVINRKTKQVRTVLD 448 Query: 389 DSNLQAPT-------WSPSGRSLIFSRKKDGDTGS---KLYSIDLNGRNETLINTPAYAS 438 L + + WSP + + G + L D +G L + Sbjct: 449 GKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDG 508 Query: 439 DPQWV 443 D +WV Sbjct: 509 DAKWV 513 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ T D VY+ ++I N FS +G+ + S + Sbjct: 321 AVSPNGKEVAFITRGD-----VYVTSIEY-ETTRQITNTPQQERNIDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTL---------FINIS--ASYSPDSSQIVFESDREGKE 326 ++ IY L + ++ T S YSPD +++ F +R Sbjct: 375 REGTWGIYESKLTRDEDKQFTYAPELKEEPLVVSGQTSFQPLYSPDGNEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKE-ASYFDPV----WSPQGDL--IAFTKFSG-EKFAIGVMKK 378 L V+ + + K SY D WSP + + G I ++K Sbjct: 432 TLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPDSKWFLVDYISVGGWNNTDIALVKA 491 Query: 379 DGSQE-RLLVEDSNLQAPT-WSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E W G+++I+S + G +Y + +G Sbjct: 492 DGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAGFRSHGSWGAERDVYIMFFDGE 548 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 42/257 (16%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR------- 238 G + + DG + S + K+ Y Y ED R Sbjct: 138 GTRFMQVYEISTDGGRPDL---YSSLYMENIALSKDGSKLLYNDYKGYEDPWRKHHQSSI 194 Query: 239 ---VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 ++L DR+ +++ F P ++++G ++ + +I+ DL N+ + Sbjct: 195 TRDIWLCTLGKDRSFRKVTTFGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEK 254 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---------------- 339 ++T + S +S + + D ++Y ++ K Sbjct: 255 QITTHTTHPVRFLTSDNSGTLCYSYD----GEIYTVKEGQKPAKVNIQIVADKIENDVIH 310 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 R+ D D SP G +AF + V + R + + +S Sbjct: 311 RLLTDG---ATDIAVSPNGKEVAFITRGD----VYVTSIEYETTRQITNTPQQERNIDFS 363 Query: 399 PSGRSLIFSRKKDGDTG 415 P GRSL++S +++G G Sbjct: 364 PDGRSLVYSAEREGTWG 380 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF+ I + G + R L ++ P WSP G+ + F+ + Sbjct: 29 CAISPDGQTIAFSYQGD----IYTVPSSGGKARQLTTHPAHDTRPVWSPDGQKIAFASNR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINT 433 G+ ++ ++ G + T Sbjct: 85 SGNF--DVFLMNKEGGEPKRLTT 105 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 38/259 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + + G R LT P +SP+ QK+A+A+ + V+LM+ + Sbjct: 41 SYQGDIYTVPSSGGKARQLTTHPAH-DTRPVWSPDGQKIAFASNRSGN-FDVFLMN-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI----------YSVDLQSNATERL 297 PKR+ + F NG ++ +A DI Y + + Sbjct: 98 GEPKRLTTHSTNEYPTTFKDNGHILYLANILQDAKDIQFPGTRFMQVYEISTDGGRPDLY 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------------QD 344 ++ NI + S D S++++ D +G E + S + I Sbjct: 158 SSLYMENI--ALSKDGSKLLYN-DYKGYEDPWRKHHQSSITRDIWLCTLGKDRSFRKVTT 214 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW--SPSGR 402 +PVW+ G + F I G+ E+ + + + S + Sbjct: 215 FGGEDRNPVWAADGASFYYLSEEKGSFNIFKKDLAGNSEKQITTHTTHPV-RFLTSDNSG 273 Query: 403 SLIFSRKKDGDTGSKLYSI 421 +L +S ++Y++ Sbjct: 274 TLCYSYD------GEIYTV 286 Score = 59.6 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 Q F+P +SP+ +VA+ ++ R K + ++ ++S + Sbjct: 408 SGQTSFQPLYSPDGNEVAFLENRTTLRVINRKTKQVRTVLDGKYLYSYSDGDQHFQWSPD 467 Query: 269 GKRALI---SVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 K L+ SV DI V LT + + + A + D +++ SDR G Sbjct: 468 SKWFLVDYISVGGWNNTDIALVKADGSGEVTNLTESGYSDGDAKWVLDGKAMIWSSDRAG 527 Query: 325 ---------KEQLYVMQSNGS 336 + +Y+M +G Sbjct: 528 FRSHGSWGAERDVYIMFFDGE 548 >gi|282861616|ref|ZP_06270680.1| WD40 domain protein beta Propeller protein [Streptomyces sp. ACTE] gi|282563432|gb|EFB68970.1| WD40 domain protein beta Propeller protein [Streptomyces sp. ACTE] Length = 1069 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 29/251 (11%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + + D +VYL D + +R+ P S +G + Sbjct: 94 SARGDLLVFTSLRDGARPQVYLRV--ADGSVRRLTRGLDAQ-HPELSPDGTTVVFDAVDA 150 Query: 280 EAMD-----IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQ 332 +A + +++V + +RLT++ +S ++SPD + I + SD + Q+Y Sbjct: 151 DAAEDAPRDLWTVRTDGSGLQRLTDSAADEVSPTFSPDGTLIAYSSDSDPARGRQIYERA 210 Query: 333 SNGSDQKRISQDKEASYFDPVWSP-----QGDLIAFTKFSGEK------FAIGVMKKDGS 381 +G ++RIS + +P W+P DL+AFT +G + V G Sbjct: 211 LSGGPERRISDAPAGNATEPSWNPVDDDAHRDLVAFTLQTGGGPGEELEPRLWVTDGKGG 270 Query: 382 QERLLVEDSNLQ---APTWSPSGRSLIFSR---KKDGDTGSKLYSIDLN--GRNETLINT 433 +L +P W P G L+F D +Y + G E L+N Sbjct: 271 DRAVLTGGPAEWSTKSPAWLPDGGGLLFLSPDQTCSCDPFDNVYRVGTETYGAPELLLNE 330 Query: 434 PAYASDPQWVG 444 P W+G Sbjct: 331 NRAVDSPTWLG 341 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 114/354 (32%), Gaps = 67/354 (18%) Query: 157 TISDDIYQSITGE--------KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 ++D + +T D + + ++ + L + DG+ ++ LT Sbjct: 116 RVADGSVRRLTRGLDAQHPELSPDGTTVVFDAVDADAAEDAPRDLWTVRTDGSGLQRLTD 175 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSS 267 S P FSP+ +AY++ D R +RI + P ++ Sbjct: 176 SAAD-EVSPTFSPDGTLIAYSSDSDPARGRQIYERALSGGPERRISDAPAGNATEPSWNP 234 Query: 268 ---NGKR--ALISVQKDEA------MDIYSVDLQSNATERLTNTLF-INI-SASYSPDSS 314 + R ++Q ++ D + LT + S ++ PD Sbjct: 235 VDDDAHRDLVAFTLQTGGGPGEELEPRLWVTDGKGGDRAVLTGGPAEWSTKSPAWLPDGG 294 Query: 315 QIVFES-----DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW--SPQGDLIAFTKFS 367 ++F S + + +Y + + + ++ + P W + + S Sbjct: 295 GLLFLSPDQTCSCDPFDNVYRVGTETYGAPELLLNENRAVDSPTWLGPAATGSVVVARTS 354 Query: 368 GEKFAIGV---MKKDGSQERLLVEDSNLQAP---------------------------TW 397 G + M++DGS R L + P ++ Sbjct: 355 GASPHKALLLDMRQDGSDPRNLGMTLLQEDPASETNTDPALDPLFDPAEGFDPWTERQSY 414 Query: 398 SPSGRSLIFSRKKDGDTG--SKLYSIDLNGRNETLINTPAYAS-----DPQWVG 444 +P GR ++ +R +D + G +++ +D +G + DP + Sbjct: 415 TPDGRRIVVTRFEDTEAGRIQRIWLVDADGAKPEAMPLAGRGPLDRDTDPAFSP 468 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 53/356 (14%), Positives = 111/356 (31%), Gaps = 84/356 (23%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYL------------------------ 206 G + + V+ + + K L M +DG++ R L Sbjct: 341 GPAATGSVVVARTSGASPHKALLLDMRQDGSDPRNLGMTLLQEDPASETNTDPALDPLFD 400 Query: 207 -TPSRDQILFEPRFSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRIGNFRS---M 259 D ++P+ +++ ++D I R++L+D + R Sbjct: 401 PAEGFDPWTERQSYTPDGRRIVVTRFEDTEAGRIQRIWLVDADGAKPEAMPLAGRGPLDR 460 Query: 260 ILAPRFSSNGKRALISVQKDEA-------MDIYSVDLQSNATE-----RLTNTLFINISA 307 P FS +G R + + D + A + + Sbjct: 461 DTDPAFSPDGTRIAFTRVTPGTDGDAPATARVLVADAVTGAITDEVVPPAGQSRGGDAQP 520 Query: 308 SYSPDSSQIVFESDR-----EGKEQLYVMQSNGSDQKR-ISQDK-----EASYFDPVWSP 356 ++SPD + F D+ G + ++ ++ D+++ ++ + P +SP Sbjct: 521 TWSPDGGTLAFTRDQVIGGLGGNKHVWTAPADDLDRQQDLTAAHCPGPCDVIDDSPAFSP 580 Query: 357 QGDLIAFTKFSGEKFA-----IGVMKKDGSQERLL---------------------VEDS 390 G +AF + G + V G +++ Sbjct: 581 DGLTLAFNRKDGGGRVNERTGVVVTSVTGGGCQVVLPAALRGDPGACGRTLPDTSATGPF 640 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLINT--PAYASDPQW 442 + WSP G L+ S ++ S L ++DL T + + P +P + Sbjct: 641 QPRDVAWSPDGSRLLLSARRALAPNSPEALSALDLASGELTPLTSGLPGRQKEPAY 696 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-FSGEK 370 D+ +IVF R + V ++ S + ++FD S +GDL+ FT G + Sbjct: 54 DTGRIVFAGTRH-RSLGRVTATDNSAP--FFGTGQPTHFDQQPSARGDLLVFTSLRDGAR 110 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF---SRKKDGDTGSKLYSIDLNGRN 427 + + DGS R L + Q P SP G +++F D L+++ +G Sbjct: 111 PQVYLRVADGS-VRRLTRGLDAQHPELSPDGTTVVFDAVDADAAEDAPRDLWTVRTDGSG 169 Query: 428 -ETLINTPAYASDPQWVG 444 + L ++ A P + Sbjct: 170 LQRLTDSAADEVSPTFSP 187 >gi|75907778|ref|YP_322074.1| ribosome assembly protein 4 [Anabaena variabilis ATCC 29413] gi|75701503|gb|ABA21179.1| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413] Length = 1652 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 65/388 (16%), Positives = 129/388 (33%), Gaps = 55/388 (14%) Query: 82 ISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIG 141 IS + +++ D ++ G Q+ V G +++ WDV + + Sbjct: 1241 ISNGQLLKTLSSHDQPVYSIAYSPNGQQL-----VSVSGDKTIKI----WDVSSSQLL-- 1289 Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVV---------------- 185 K S IA + + GD +I VS S Sbjct: 1290 KTLSGHSNSVYSIA---YSPDGKQLASASGDKTIKIWDVSISKPLKILSGHSDSVISIAY 1346 Query: 186 --------SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 SG N + + D + +SPN +++A + D Sbjct: 1347 SPSEKQLASGSGDNIIKIWDVSTGQTLKTLSGHSDWVRSITYSPNGKQLASGSGDK---- 1402 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 + + D + K + + +++ +S +G++ S D + I+ V+ + L Sbjct: 1403 TIKIWDVSTGQPVKTLLGHKDRVISVAYSPDGQQLA-SASGDTTIKIWDVN-SGQLLKTL 1460 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T S +YSPD Q+ SD + + + + + + S +SP Sbjct: 1461 TGHSSWVRSVTYSPDGKQLASASD---DKTIKIWDISSGKLLKTLSGHQDSVKSVAYSPD 1517 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGS 416 G +A + I + G + L SN ++ +SP G+ L + + D Sbjct: 1518 GKQLAAAS---DNIKIWDVS-SGKPLKTLTGHSNWVRSVAYSPDGQQLASASR---DNTI 1570 Query: 417 KLYSIDLNGRNETLINTPAYASDPQWVG 444 K++ + +TL + + Sbjct: 1571 KIWDVSSGQVLKTLTGHSDWVRSIIYSP 1598 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 44/300 (14%) Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG 187 ++WDV + + H SD + G + + SG Sbjct: 1362 IKIWDVSTGQTLKTLS-----------GH--SDWVRSITYSPNG----------KQLASG 1398 Query: 188 IIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 ++ + D G ++ L +D+++ +SP+ Q++A A+ D + + D Sbjct: 1399 SGDKTIKIWDVSTGQPVKTLLGHKDRVISV-AYSPDGQQLASASGDT----TIKIWDVNS 1453 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + K + S + + +S +GK+ S D+ + I+ + + L+ S Sbjct: 1454 GQLLKTLTGHSSWVRSVTYSPDGKQLA-SASDDKTIKIWDIS-SGKLLKTLSGHQDSVKS 1511 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +YSPD Q+ SD + + + + +SP G +A Sbjct: 1512 VAYSPDGKQLAAASD-----NIKIWDVSSGKPLKTLTGHSNWVRSVAYSPDGQQLASASR 1566 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + Q + + + +SP G+ L GD + +D + Sbjct: 1567 DNT---IKIWDVSSGQVLKTLTGHSDWVRSIIYSPDGKQLA---SASGDKTIIFWDLDFD 1620 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 99/278 (35%), Gaps = 23/278 (8%) Query: 173 FNSRILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 + S + F + SG ++ + D + + +SP+ Q++A + Sbjct: 1046 WVSSVAFAPQKRQLASGSGDKTVKIWDINSGKTLKTLSGHSDSVISIAYSPDGQQLASGS 1105 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 D + + D + K + ++ +S N ++ S D+ + I+ ++ Sbjct: 1106 GDK----TIKIWDINSGKTLKTLSGHSDSVINIAYSPNKQQLA-SASDDKTVKIWDIN-S 1159 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 + + L+ S +YSPD ++ S + + + N + Sbjct: 1160 GKSLKTLSGHSHAVRSVTYSPDGKRLASASR---DKTIKIWDINSGQLLKTLSGHSDGVI 1216 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP----TWSPSGRSLIF 406 +SP G +A + S + I D S +LL S+ P +SP+G+ L+ Sbjct: 1217 SIAYSPDGKHLA-SASSDKTIKIW----DISNGQLLKTLSSHDQPVYSIAYSPNGQQLV- 1270 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 GD K++ + + +TL + Sbjct: 1271 --SVSGDKTIKIWDVSSSQLLKTLSGHSNSVYSIAYSP 1306 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 115/342 (33%), Gaps = 42/342 (12%) Query: 108 AQVLVTGRVIKEG----KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 + +++ +G ++WD+ K + H SD + Sbjct: 1086 SDSVISIAYSPDGQQLASGSGDKTIKIWDINSGKTLKTLS-----------GH--SDSVI 1132 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + + S ++ + D + + +SP+ Sbjct: 1133 NIAYSPN----------KQQLASASDDKTVKIWDINSGKSLKTLSGHSHAVRSVTYSPDG 1182 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 +++A A+ D + + D + K + +++ +S +GK S D+ + Sbjct: 1183 KRLASASRDK----TIKIWDINSGQLLKTLSGHSDGVISIAYSPDGKHLA-SASSDKTIK 1237 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 I+ + + L++ S +YSP+ Q+V S G + + + + S + Sbjct: 1238 IWDIS-NGQLLKTLSSHDQPVYSIAYSPNGQQLVSVS---GDKTIKIWDVSSSQLLKTLS 1293 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGR 402 S + +SP G +A + + I + ++L S+ + + +SPS + Sbjct: 1294 GHSNSVYSIAYSPDGKQLA-SASGDKTIKIWDVSIS-KPLKILSGHSDSVISIAYSPSEK 1351 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L GD K++ + +TL + + Sbjct: 1352 QLA---SGSGDNIIKIWDVSTGQTLKTLSGHSDWVRSITYSP 1390 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 87/240 (36%), Gaps = 21/240 (8%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + + F+P ++++A + D V + D + K + +++ + Sbjct: 1039 TLAGHENWVSSVAFAPQKRQLASGSGDK----TVKIWDINSGKTLKTLSGHSDSVISIAY 1094 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ S D+ + I+ ++ + L+ I+ +YSP+ Q+ SD Sbjct: 1095 SPDGQQLA-SGSGDKTIKIWDIN-SGKTLKTLSGHSDSVINIAYSPNKQQLASASD---D 1149 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + N + + +SP G +A I + + Q Sbjct: 1150 KTVKIWDINSGKSLKTLSGHSHAVRSVTYSPDGKRLASASRDKT---IKIWDINSGQLLK 1206 Query: 386 LVEDSNLQAPT--WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + + + +SP G+ L + D K++ I N L+ T + P + Sbjct: 1207 TLSGHSDGVISIAYSPDGKHLASASS---DKTIKIWDIS----NGQLLKTLSSHDQPVYS 1259 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 83/258 (32%), Gaps = 36/258 (13%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 + ++WDV + + + H D + G Sbjct: 1393 KQLASGSGDKTIKIWDVSTGQPVKTL-----------LGHK--DRVISVAYSPDG----- 1434 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + + S ++ + D + + + +SP+ +++A A+ D Sbjct: 1435 -----QQLASASGDTTIKIWDVNSGQLLKTLTGHSSWVRSVTYSPDGKQLASASDDK--- 1486 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + + D + K + + + + +S +GK+ + + + I+ V + Sbjct: 1487 -TIKIWDISSGKLLKTLSGHQDSVKSVAYSPDGKQLAAAS---DNIKIWDVS-SGKPLKT 1541 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT S +YSPD Q+ S + + + + ++SP Sbjct: 1542 LTGHSNWVRSVAYSPDGQQLASASR---DNTIKIWDVSSGQVLKTLTGHSDWVRSIIYSP 1598 Query: 357 QGDLIAFTKFSGEKFAIG 374 G +A SG+K I Sbjct: 1599 DGKQLA--SASGDKTIIF 1614 Score = 70.0 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 38/222 (17%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + + ++WDV + + K + R + T S D Sbjct: 1434 GQQLASASGDTTI--KIWDVNSGQLL--KTLTGHSSWVRSV--TYSPD------------ 1475 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + S ++ + D + + +SP+ +++A A+ + Sbjct: 1476 -------GKQLASASDDKTIKIWDISSGKLLKTLSGHQDSVKSVAYSPDGKQLAAASDNI 1528 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + + D + K + + + + +S +G++ S +D + I+ D+ S Sbjct: 1529 K------IWDVSSGKPLKTLTGHSNWVRSVAYSPDGQQLA-SASRDNTIKIW--DVSSGQ 1579 Query: 294 -TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + LT S YSPD Q+ S G + + + Sbjct: 1580 VLKTLTGHSDWVRSIIYSPDGKQLASAS---GDKTIIFWDLD 1618 >gi|212692488|ref|ZP_03300616.1| hypothetical protein BACDOR_01984 [Bacteroides dorei DSM 17855] gi|212664963|gb|EEB25535.1| hypothetical protein BACDOR_01984 [Bacteroides dorei DSM 17855] Length = 1074 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQDKEASYFDP-----------VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ + D W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMPEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQDIIPMWIG 226 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 120/326 (36%), Gaps = 49/326 (15%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + I + I+ DI GE+ F S ++ V + Sbjct: 202 YDPAAKKVENITNNIAQDIIPMWIGEEIYFIS----------DRDRTMNIFVYNIRTKQT 251 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-- 261 +T D + P S N Q + Y E +Y +D + ++ K S + Sbjct: 252 EKVTNYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISITLTSDNIYA 304 Query: 262 ------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISAS 308 A S +G R +++ + +++ + + T +T T Sbjct: 305 RKEMKRVADNLTAASLSPDGHRLVVTARG----EVFDIPAEKGVTRDITRTPGANEREGE 360 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 361 WSPNGKQIAYISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYTDRKN 420 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + +R ++++ +SP + + +++ + S +Y L Sbjct: 421 ---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVIYVYHLTSG 476 Query: 427 NETLIN-------TPAYASDPQWVGF 445 E + +P +++D +++ F Sbjct: 477 KEYPVTEKWYSSSSPVFSTDGKYLIF 502 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMPEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQDIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMI-------LAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMPEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--ED 389 + I+ + A P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENIT-NNIAQDIIPMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 118/345 (34%), Gaps = 47/345 (13%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++D+ K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLVVTARGEVFDIPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRIS 342 Y L S +T + + S +S D ++F S+R+ + + Sbjct: 469 YVYHLTSGKEYPVTEKWYSSSSPVFSTDGKYLIFSSERDFNPIYSQTEWNHAYNRMGGVY 528 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVMKKDGSQERLLVEDSN 391 A+ P ++++ + + I G +L ++ N Sbjct: 529 MAMLANDTPSPLLPSDEMVSIEQQTTDAANKKPEATNNTVKIDPEGLPGRLIKLPLQAGN 588 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + G+ + ++ ++ +K+Y DL + E ++ AY Sbjct: 589 YDN--FYSDGKKVWYASGRN----TKVY--DLAKQKEEIVAEGAY 625 >gi|237709192|ref|ZP_04539673.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456888|gb|EEO62609.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 1074 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQDKEASYFDP-----------VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ + D W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMPEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQDIIPMWIG 226 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 120/326 (36%), Gaps = 49/326 (15%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + I + I+ DI GE+ F S ++ V + Sbjct: 202 YDPAAKKVENITNNIAQDIIPMWIGEEIYFIS----------DRDRTMNIFVYNIRTKQT 251 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-- 261 +T D + P S N Q + Y E +Y +D + ++ K S + Sbjct: 252 EKVTNYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISITLTSDNIYA 304 Query: 262 ------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISAS 308 A S +G R +++ + +++ + + T +T T Sbjct: 305 RKEMKRVADNLTAASLSPDGHRLVVTARG----EVFDIPAEKGVTRDITRTPGANEREGE 360 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 361 WSPNGKQIAYISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYTDRKN 420 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + +R ++++ +SP + + +++ + S +Y L Sbjct: 421 ---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVIYVYHLTSG 476 Query: 427 NETLIN-------TPAYASDPQWVGF 445 E + +P +++D +++ F Sbjct: 477 KEYPVTEKWYSSSSPVFSTDGKYLIF 502 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMPEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQDIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMI-------LAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMPEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--ED 389 + I+ + A P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENIT-NNIAQDIIPMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 117/345 (33%), Gaps = 47/345 (13%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++D+ K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLVVTARGEVFDIPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRIS 342 Y L S +T + + S +S D ++F S+R+ + + Sbjct: 469 YVYHLTSGKEYPVTEKWYSSSSPVFSTDGKYLIFSSERDFNPIYSQTEWNHAYNRMGGVY 528 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVMKKDGSQERLLVEDSN 391 A+ P ++++ + + I G +L ++ N Sbjct: 529 MAMLANDTPSPLLPSDEMVSIEQQTTDAANKKPEATNNTVKIDPEGLPGRLIKLPLQAGN 588 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + G+ + ++ + +K+Y DL + E ++ AY Sbjct: 589 YDN--FYSDGKKVWYASGRS----TKVY--DLAKQKEEIVAEGAY 625 >gi|265752719|ref|ZP_06088288.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235905|gb|EEZ21400.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1074 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQDKEASYFDP-----------VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ + D W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMPEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQDIIPMWIG 226 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 120/326 (36%), Gaps = 49/326 (15%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + I + I+ DI GE+ F S ++ V + Sbjct: 202 YDPAAKKVENITNNIAQDIIPMWIGEEIYFIS----------DRDRTMNIFVYNIRTKQT 251 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-- 261 +T D + P S N Q + Y E +Y +D + ++ K S + Sbjct: 252 EKVTNYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISITLTSDNIYA 304 Query: 262 ------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISAS 308 A S +G R +++ + +++ + + T +T T Sbjct: 305 RKEMKRVADNLTAASLSPDGHRLVVTARG----EVFDIPAEKGVTRDITRTPGANEREGE 360 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 361 WSPNGKQIAYISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYTDRKN 420 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + +R ++++ +SP + + +++ + S +Y L Sbjct: 421 ---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVIYVYHLTSG 476 Query: 427 NETLIN-------TPAYASDPQWVGF 445 E + +P +++D +++ F Sbjct: 477 KEYPVTEKWYSSSSPVFSTDGKYLIF 502 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMPEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQDIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMI-------LAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMPEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--ED 389 + I+ + A P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENIT-NNIAQDIIPMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 117/345 (33%), Gaps = 47/345 (13%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++D+ K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLVVTARGEVFDIPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRIS 342 Y L S +T + + S +S D ++F S+R+ + + Sbjct: 469 YVYHLTSGKEYPVTEKWYSSSSPVFSTDGKYLIFSSERDFNPIYSQTEWNHAYNRMGGVY 528 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVMKKDGSQERLLVEDSN 391 A+ P ++++ + + I G +L ++ N Sbjct: 529 MAMLANDTPSPLLPSDEMVSIEQQTTDAANKKPEATNNTVKIDPEGLPGRLIKLPLQAGN 588 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + G+ + ++ + +K+Y DL + E ++ AY Sbjct: 589 YDN--FYSDGKKVWYASGRS----TKVY--DLAKQKEEIVAEGAY 625 >gi|255010297|ref|ZP_05282423.1| putative peptidase/protease family protein [Bacteroides fragilis 3_1_12] Length = 1090 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +P + S +G + D IY V +LT + Sbjct: 12 LTTLTGNAASPLWMRDVQISPDGTEIAFCYKGD----IYKVPAGGGVATQLTTQPSYECT 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPDS QI F SDR G +++M + G +R++ + AS ++P G I F+ Sbjct: 68 PIWSPDSKQIAFASDRNGNFDIFIMPATGGTAQRLTTNS-ASELPSTFTPDGKYILFSAS 126 Query: 367 SGEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 + + + +G + ++ +A ++ SG ++ +K Sbjct: 127 IQDPAQSAMFPTTAMTELYKVPSNGGRTEQVLGTP-AEAVCYATSGEFFLYQDRKGFEDE 185 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P Sbjct: 186 WRKHHTSSITRDIWMYNTKTGKHTNLTNHAGEDRNPILSP 225 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 33/238 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S + K+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PAGGGVATQLTTQPSYECTPIWSPDSKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 + DI+ + +RLT + ++++PD I+F + + Q Sbjct: 84 NGNFDIFIMPATGGTAQRLTTNSASELPSTFTPDGKYILFSASIQDPAQSAMFPTTAMTE 143 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + SNG +++ A S G+ + S I + Sbjct: 144 LYKVPSNGGRTEQVL-GTPAEAVCYATS--GEFFLYQDRKGFEDEWRKHHTSSITRDIWM 200 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + L + P SP G+S+ +++G + +D +T+ + Sbjct: 201 YNTKTGKHTNLTNHAGEDRNPILSPDGKSVYILSEREGSFNVYNFPLDNTQSLKTVTS 258 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 104/285 (36%), Gaps = 34/285 (11%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 F + ++ V +R+L+ S D L ++ + + Y + + Sbjct: 240 FNVYNFPLDNTQSLKTVTSFKTHPVRFLSMSHDGTLC---YAYDGE--IYTQKGNATPQK 294 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + R D+ F + + S +GK+ V+ +++ T+++T Sbjct: 295 TDIDIVRDDQDKIADLTFTNGATSGTVSPDGKQIAFIVRG----EVFVTSTDYATTKQIT 350 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEA 347 T +++PD+ + + S+R G QL++ + ++K + Sbjct: 351 QTPAREAGLTFAPDNRTLAYASERNGNWQLFLAKIARKEEANFPNATIIEEKVLLPSTTV 410 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSG 401 P +SP G +AF + + V+ D + R + + S + WSP G Sbjct: 411 ERAYPQFSPDGKELAFIEDRN---RLMVVNLDTKKVRQITDGSTWFSTDGNFDYQWSPDG 467 Query: 402 RS--LIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQW 442 + L F + D S + + G + L N+ + P+W Sbjct: 468 KWFTLEFIGNRH-DPYSDIGLVSAQGGSPIINLTNSGYMSGSPRW 511 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + F+ + + + + Sbjct: 320 TVSPDGKQIAFIVRGE------VFVTSTDYATTKQITQTPAREAGLTFAPDNRTLAYASE 373 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++ + N I +SPD ++ F DR Sbjct: 374 RNGNWQLFLAKIARKEEANFPNATIIEEKVLLPSTTVERAYPQFSPDGKELAFIEDR--- 430 Query: 326 EQLYVMQSNGSDQKRISQDKEA----SYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ FD WSP G + F + + IG++ Sbjct: 431 NRLMVVNLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIGLVSA 490 Query: 379 DGSQERL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G + L + +P W+ G +++F+ ++ G Sbjct: 491 QGGSPIINLTNSGYMSGSPRWALDGNAILFTTERYG 526 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 103/300 (34%), Gaps = 41/300 (13%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 T + +I F S+ + + +M G + LT + F+P+ + Sbjct: 66 CTPIWSPDSKQIAFASDRNGN----FDIFIMPATGGTAQRLTTNSAS-ELPSTFTPDGKY 120 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFR---SMILAPR----FSSNGKRALISVQK 278 + ++ + T + K N ++ P ++++G+ L +K Sbjct: 121 ILFSASIQDPAQSAMFPTTAMTELYKVPSNGGRTEQVLGTPAEAVCYATSGEFFLYQDRK 180 Query: 279 DE------------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 DI+ + ++ LTN + + SPD + S+REG Sbjct: 181 GFEDEWRKHHTSSITRDIWMYNTKTGKHTNLTNHAGEDRNPILSPDGKSVYILSEREGSF 240 Query: 327 QLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDL------IAFT---KFSGEKFAIGVM 376 +Y + + K ++ K S G L +T + +K I ++ Sbjct: 241 NVYNFPLDNTQSLKTVTSFKTHPVRFLSMSHDGTLCYAYDGEIYTQKGNATPQKTDIDIV 300 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPA 435 + D + L + + T SP G+ + F + +++ + + + TPA Sbjct: 301 RDDQDKIADLTFTNGATSGTVSPDGKQIAFIVR------GEVFVTSTDYATTKQITQTPA 354 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 33/230 (14%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + ++ P +SP+ +++A+A+ + + +++M +R+ + Sbjct: 51 GGGVATQLTTQPSYECTPIWSPDSKQIAFASDRNGN-FDIFIM-PATGGTAQRLTTNSAS 108 Query: 260 ILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERLTNTLFINISAS 308 L F+ +GK L S + +Y V TE++ T + Sbjct: 109 ELPSTFTPDGKYILFSASIQDPAQSAMFPTTAMTELYKVPSNGGRTEQVLGTPAEAV--C 166 Query: 309 YSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 Y+ +++ DR+G +++ + ++ + +P+ S Sbjct: 167 YATSGEFFLYQ-DRKGFEDEWRKHHTSSITRDIWMYNTKTGKHTNLT-NHAGEDRNPILS 224 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW---SPSGR 402 P G + F + D +Q V + S G Sbjct: 225 PDGKSVYILSEREGSFNVYNFPLDNTQSLKTVTSFKTHPVRFLSMSHDGT 274 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 77/366 (21%), Positives = 141/366 (38%), Gaps = 55/366 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 G V +GK V ++ V K+ +PA R+ T + D + Sbjct: 319 GTVSPDGKQIAFIVRGEVF-VTSTDYATTKQITQTPA--REAGLTFAPDNRTLAYASERN 375 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + ++ + L PS P+FSP+ +++A+ Sbjct: 376 GNWQLFLAKIARKEEANFPNATII-------EEKVLLPSTTVERAYPQFSPDGKELAF-- 426 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRA---LISVQKDEAMDIY 285 +D + L V +DT+ R + S ++S +GK I + D DI Sbjct: 427 IEDRNRLMVVNLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIG 486 Query: 286 SVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q + LTN+ +++ S ++ D + I+F ++R G L + Sbjct: 487 LVSAQGGSPIINLTNSGYMSGSPRWALDGNAILFTTERYGMRAHASWGSQNDAMLVFLNQ 546 Query: 334 NGSDQKRIS---------------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 + D+ R+S +DKE + D + D A T+ E I V++ Sbjct: 547 DAFDKFRLSKEDYELQKELEKEQQKDKEKASTDLKKDKKKDPKAETEKKDEVKTI-VVEL 605 Query: 379 DG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--T 433 +G RL SNL + S G +L + +G G L+ +DL + L++ Sbjct: 606 NGLEDRIIRLTPNSSNLGSTIISKDGETLYYLSAFEG--GFDLWKMDLRKKETKLLHKMN 663 Query: 434 PAYASD 439 +AS Sbjct: 664 AGWASM 669 >gi|150003723|ref|YP_001298467.1| putative exported protease [Bacteroides vulgatus ATCC 8482] gi|149932147|gb|ABR38845.1| putative exported protease [Bacteroides vulgatus ATCC 8482] Length = 1074 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQDKEASYFDP-----------VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ + D W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMPEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQDIIPMWIG 226 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 120/326 (36%), Gaps = 49/326 (15%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + I + I+ DI GE+ F S ++ V + Sbjct: 202 YDPAAKKVENITNNIAQDIIPMWIGEEIYFIS----------DRDRTMNIFVYNIRTKQT 251 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-- 261 +T D + P S N Q + Y E +Y +D + ++ K S + Sbjct: 252 EKVTNYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISITLTSDNIYA 304 Query: 262 ------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISAS 308 A S +G R +++ + +++ + + T +T T Sbjct: 305 RKEMKRVADNLTAASLSPDGHRLVVTARG----EVFDIPAEKGVTRDITRTPGANEREGE 360 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 361 WSPNGKQIAYISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYTDRKN 420 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + +R ++++ +SP + + +++ + S +Y L Sbjct: 421 ---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVIYVYHLTSG 476 Query: 427 NETLIN-------TPAYASDPQWVGF 445 E + +P +++D +++ F Sbjct: 477 KEYPVTEKWYSSSSPVFSTDGKYLIF 502 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMPEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQDIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMI-------LAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMPEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--ED 389 + I+ + A P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENIT-NNIAQDIIPMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 93/258 (36%), Gaps = 22/258 (8%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRK-QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 G++I ++L D K RK + I S RK ++D+ +T Sbjct: 269 GQIIVYEHGGYL--YKL-DPKTRKSEKISITLTSDNIYARKEMKRVADN----LTAASLS 321 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + L V+ + + + R +T + E +SPN +++AY + Sbjct: 322 PDGHRLVVTARG-------EVFDIPAEKGVTRDITRTPGANEREGEWSPNGKQIAYISDR 374 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + ++L + N + I +S + K+ L + D I VD+ S Sbjct: 375 TGET-EIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYT---DRKNRIVEVDIASK 430 Query: 293 ATERLTNTL-FINISASYSPDSSQIVFE-SDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 A + +YSPDS I + S +YV + ++ +K S Sbjct: 431 AKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVIYVYHLTSGKEYPVT-EKWYSSS 489 Query: 351 DPVWSPQGDLIAFTKFSG 368 PV+S G + F+ Sbjct: 490 SPVFSTDGKYLIFSSERD 507 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 26/222 (11%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++D+ K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLVVTARGEVFDIPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 Y L S +T + + S +S D ++F S+R+ Sbjct: 469 YVYHLTSGKEYPVTEKWYSSSSPVFSTDGKYLIFSSERDFNP 510 >gi|145640335|ref|ZP_01795919.1| translocation protein TolB precursor [Haemophilus influenzae R3021] gi|145274921|gb|EDK14783.1| translocation protein TolB precursor [Haemophilus influenzae 22.4-21] Length = 143 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 11/150 (7%) Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 T+ N ++SPD + I+F SDR G Q+Y M +NG + S Sbjct: 2 TSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDANGGSVTAV-----GGRGSAQISAD 56 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 G + + +L ++P+ SP+G +I+S + G Sbjct: 57 GKTLVMI---NGNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQG--LGKV 111 Query: 418 LYSIDLNGRNE-TLINTPAYASDPQWVGFM 446 L + +GR + +L + P W ++ Sbjct: 112 LQLVSADGRFKASLPGSDGQVKFPAWSPYL 141 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + P +S +G L + + + +Y +D + + SA S D Sbjct: 2 TSGAGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDANGGSVTAV----GGRGSAQISADG 57 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +V G + + +S P SP G +I ++ G + Sbjct: 58 KTLVMI---NGNNNVVKQDLTTGVSEVLSTSFLGE--SPSLSPNGIMIIYSSTQGLGKVL 112 Query: 374 GVMKKDGS-QERLLVEDSNLQAPTWSP 399 ++ DG + L D ++ P WSP Sbjct: 113 QLVSADGRFKASLPGSDGQVKFPAWSP 139 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 11/150 (7%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 S EP +SP+ + + + D +VY MD G + + S Sbjct: 1 MTSGAGNNTEPAWSPDGNSILFTS-DRSGSPQVYRMDANGGSVTAVGGRG-----SAQIS 54 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 ++GK ++ + ++ DL + +E L +T F+ S S SP+ I++ S + + Sbjct: 55 ADGKTLVMI---NGNNNVVKQDLTTGVSEVL-STSFLGESPSLSPNGIMIIYSSTQGLGK 110 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 L ++ ++G + + + P WSP Sbjct: 111 VLQLVSADGRFKASL-PGSDGQVKFPAWSP 139 >gi|116624547|ref|YP_826703.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227709|gb|ABJ86418.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 903 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 15/183 (8%) Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLTNTLFINISAS 308 +R+ N + P S +G + + +DI+ + RLT + S Sbjct: 333 RRVTNTSGLTAFPTLSRDGTLLAFASDRSDAGNLDIWIQQIGGRDPFRLTTDDADDTDPS 392 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----- 363 SPD +++ F S+R G +YV+ S G + + A P +SP G IA+ Sbjct: 393 ISPDGTRVAFRSERNGG-GIYVVPSMGGEAALLVPGGRA----PRFSPDGRWIAYWAGRE 447 Query: 364 -TKFSGEKFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSG-RSLIFSRKKDGDTGSKLYS 420 + V++ G Q R L + +P WSP G R L +R+ D ++ Sbjct: 448 SESLLPGTARVFVIESGGGQPRQLGTDLGTATSPIWSPDGDRVLALARRDLSDPAPDWWT 507 Query: 421 IDL 423 + L Sbjct: 508 LPL 510 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%) Query: 294 TERLTNTLFINISASYSPDSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD 351 R+TNT + + S D + + F SDR G +++ Q G D R+ +A D Sbjct: 332 LRRVTNTSGLTAFPTLSRDGTLLAFASDRSDAGNLDIWIQQIGGRDPFRL-TTDDADDTD 390 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 P SP G +AF I V+ G + LLV AP +SP GR + + ++ Sbjct: 391 PSISPDGTRVAFRSERNGG-GIYVVPSMGGEAALLVPGGR--APRFSPDGRWIAYWAGRE 447 Query: 412 GDT----GSKLYSIDLNGRNETLINTP-AYASDPQWVG 444 ++ ++++ I+ G + T A+ P W Sbjct: 448 SESLLPGTARVFVIESGGGQPRQLGTDLGTATSPIWSP 485 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 31/250 (12%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + + P S + +A+A+ + + R P R+ + P S Sbjct: 335 VTNTSGLTAFPTLSRDGTLLAFASDRSDAGNLDIWIQQIGGRDPFRLTTDDADDTDPSIS 394 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE--- 323 +G R +++ IY V L + +SPD I + + RE Sbjct: 395 PDGTRVAFRSERNGGG-IYVVPSMGGEAALLVPGG---RAPRFSPDGRWIAYWAGRESES 450 Query: 324 ---GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI---AFTKFSGEKFAIGVMK 377 G +++V++S G +++ D + P+WSP GD + A S + Sbjct: 451 LLPGTARVFVIESGGGQPRQLGTDL-GTATSPIWSPDGDRVLALARRDLSDPAPDWWTLP 509 Query: 378 KDGS-------------QERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 Q R + P W SGR ++F+ G L+ I + Sbjct: 510 LQSGASQKTGALSALAAQRRRYTAWNTQIFPIEWRASGR-VLFAS--GPADGGNLWEIAI 566 Query: 424 NGRNETLINT 433 G + + T Sbjct: 567 TGGKASGLAT 576 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 113/364 (31%), Gaps = 93/364 (25%) Query: 161 DIYQSITGEKGD------FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 I + +T G L S S + + G + LT Sbjct: 330 QILRRVTNTSGLTAFPTLSRDGTLLAFASDRSDAGNLDIWIQQIGGRDPFRLTTDD-ADD 388 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 +P SP+ +VA+ + + +Y++ + A + R APRFS +G+ Sbjct: 389 TDPSISPDGTRVAFRSERNGGG--IYVVPSMGGEAALLVPGGR----APRFSPDGRWIAY 442 Query: 275 SVQKD------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE----- 323 ++ ++ ++ +L L S +SPD +++ + R+ Sbjct: 443 WAGRESESLLPGTARVFVIESGGGQPRQLGTDLGTATSPIWSPDGDRVLALARRDLSDPA 502 Query: 324 -------------------------------GKEQLYVM-------------QSNGSD-- 337 Q++ + ++G + Sbjct: 503 PDWWTLPLQSGASQKTGALSALAAQRRRYTAWNTQIFPIEWRASGRVLFASGPADGGNLW 562 Query: 338 ------------QKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD----- 379 +I+Q +P +AF+ K I D Sbjct: 563 EIAITGGKASGLATQITQGPGLQLQASTAATPDHR-MAFSNLE-WKPEIWSQAVDADRGV 620 Query: 380 --GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 G R+ V++ + +P+ S GR L F R++ G T + + NG+ TL+ Sbjct: 621 ARGDVVRVTVDEPSSMSPSLSGDGRYLAFLRRQLGLTSLRSREL-ANGKEITLVTGNGAF 679 Query: 438 SDPQ 441 +P+ Sbjct: 680 FNPR 683 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 93/301 (30%), Gaps = 57/301 (18%) Query: 165 SITGEKGDFNSRILFVSESVVSGI-IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 I + + R+LF S G + ++ G + Q+ +P+ Sbjct: 537 QIFPIEWRASGRVLFASGPADGGNLWEIAITGGKASGLATQITQGPGLQLQASTAATPD- 595 Query: 224 QKVAYATYDDEDILRVYLMDTRID---RAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 ++A++ + + + +D R+ ++P S +G+ ++ Sbjct: 596 HRMAFSNLEWKPEIWSQAVDADRGVARGDVVRVTVDEPSSMSPSLSGDGRYLAFLRRQLG 655 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-- 338 + S +L + L + S D S + + SD EG L+ M G Sbjct: 656 LTSLRSRELANGKEITLVTGNGAFFNPRLSGDGSTVAY-SDAEGS--LFAMPRTGGPAEK 712 Query: 339 ---------------KRISQDK------------------------EASYFDPVWSPQGD 359 KRIS + E +SP G Sbjct: 713 LCSACGTVMGISADGKRISYEPIQAENLTWYDLDRKASVTAAPRPAEGVLSAGRFSPDGK 772 Query: 360 LIAFTKFSGEKFA-------IGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKD 411 IAF + + + I + + + + + P WSP+G L + +D Sbjct: 773 WIAFHMRTRQSTSQIFLLPTIATLPLPRESWVPVTDGKSDELEPAWSPNGELLYYLSDRD 832 Query: 412 G 412 G Sbjct: 833 G 833 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 107/325 (32%), Gaps = 76/325 (23%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV-AYATYDDEDILRVYLMDTRIDR-- 248 + V++ G R L P +SP+ +V A A D D + Sbjct: 457 RVFVIESGGGQPRQLGTDL-GTATSPIWSPDGDRVLALARRDLSDPAPDWWTLPLQSGAS 515 Query: 249 -----------APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT--- 294 +R + + I + ++G+ S D +++ + + Sbjct: 516 QKTGALSALAAQRRRYTAWNTQIFPIEWRASGRVLFASGPADGG-NLWEIAITGGKASGL 574 Query: 295 -ERLTNTLFINISASYS--PDSSQIVFESDREGKEQLYVMQSNG------SDQKRISQDK 345 ++T + + AS + PD ++ F S+ E K +++ + D R++ D Sbjct: 575 ATQITQGPGLQLQASTAATPD-HRMAF-SNLEWKPEIWSQAVDADRGVARGDVVRVTVD- 631 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSL 404 E S P S G +AF + ++ + +G + L+ + P S G ++ Sbjct: 632 EPSSMSPSLSGDGRYLAFLRRQLGLTSLRSRELANGKEITLVTGNGAFFNPRLSGDGSTV 691 Query: 405 IFSRK--------KDGDTGSKLYS-------IDLNGRN---------------------- 427 +S + G KL S I +G+ Sbjct: 692 AYSDAEGSLFAMPRTGGPAEKLCSACGTVMGISADGKRISYEPIQAENLTWYDLDRKASV 751 Query: 428 -------ETLINTPAYASDPQWVGF 445 E +++ ++ D +W+ F Sbjct: 752 TAAPRPAEGVLSAGRFSPDGKWIAF 776 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 94/263 (35%), Gaps = 43/263 (16%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +TG FN R+ +V + SL M R G L + ++ S + ++ Sbjct: 673 VTGNGAFFNPRLSGDGSTVAYSDAEGSLFAMPRTGGPAEKLCSACGTVMG---ISADGKR 729 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA---- 281 ++Y E++ L A R ++ A RFS +GK ++ ++ Sbjct: 730 ISYEPIQAENLTWYDLDRKASVTAAPRPA--EGVLSAGRFSPDGKWIAFHMRTRQSTSQI 787 Query: 282 ---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 I ++ L + +T+ + ++SP+ + + SDR+G ++ + + + Sbjct: 788 FLLPTIATLPLPRESWVPVTDGKSDELEPAWSPNGELLYYLSDRDGFRCIWARRLDHTTH 847 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 + P GD A F + + + + L + + Sbjct: 848 Q----------------PSGDAFAVVHF----------HRSRRSLKRITNTTGLTGLSVA 881 Query: 399 PSGRSLIFSRKKDGDTGSKLYSI 421 GR + FS G+ ++ + Sbjct: 882 -DGRMV-FS---FGELTGNIWLL 899 >gi|17225206|gb|AAL37299.1|AF323583_1 beta transducin-like protein HET-E2C*4 [Podospora anserina] Length = 1356 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 90/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 980 QRVASGSGDKTIKIWDTASGTCTQTLEGHGNSVWSVAFSPDGQRVASGSDDK----TIKI 1035 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 DT + + + + FS +G+R S D + I+ D S + L Sbjct: 1036 WDTASGTCTQTLEGHGGWVQSVAFSPDGQRVA-SGSNDHTIKIW--DAASGTCTQTLEGH 1092 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ SD + + + + + S + +SP G Sbjct: 1093 GDSVWSVAFSPDGQRVASGSD---DHTIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQR 1149 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + S DG K+ Sbjct: 1150 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA-SGSIDGT--IKI 1203 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + + Sbjct: 1204 WDAASGTCTQTLEGHGGWVHSVAFSP 1229 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 93/263 (35%), Gaps = 19/263 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 854 QRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVASGSDDK----TIKI 909 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + S +L+ FS +G+R S D+ + I+ D S + L Sbjct: 910 WDAASGTCTQTLEGHGSSVLSVAFSPDGQRVA-SGSGDKTIKIW--DTASGTGTQTLEGH 966 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S G + + + + + + S + +SP G Sbjct: 967 GGSVWSVAFSPDGQRVASGS---GDKTIKIWDTASGTCTQTLEGHGNSVWSVAFSPDGQR 1023 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A + + I + L +Q+ +SP G+ + D K++ Sbjct: 1024 VA-SGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVA---SGSNDHTIKIW- 1078 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 + + T T D W Sbjct: 1079 ---DAASGTCTQTLEGHGDSVWS 1098 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 87/265 (32%), Gaps = 23/265 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D + FSP+ Q+VA + D + + Sbjct: 896 QRVASGSDDKTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDK----TIKI 951 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 DT + + + + FS +G+R S D+ + I+ D S + Sbjct: 952 WDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA-SGSGDKTIKIW--DTASGTCTQTLEGH 1008 Query: 302 FINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 ++ S ++SPD ++ SD + + + + + + +SP G Sbjct: 1009 GNSVWSVAFSPDGQRVASGSD---DKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQR 1065 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A I + +E + +SP G+ + D K+ Sbjct: 1066 VA---SGSNDHTIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQRVASGSD---DHTIKI 1119 Query: 419 YSIDLNGRNETLINTPAYASDPQWV 443 + + + T T D W Sbjct: 1120 W----DAASGTCTQTLEGHGDSVWS 1140 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 19/252 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D + FSP+ Q+VA + D + + Sbjct: 1022 QRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSNDH----TIKI 1077 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + FS +G+R S D + I+ D S + L Sbjct: 1078 WDAASGTCTQTLEGHGDSVWSVAFSPDGQRVA-SGSDDHTIKIW--DAASGTCTQTLEGH 1134 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + +SP G Sbjct: 1135 GDSVWSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQR 1191 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + D K+ Sbjct: 1192 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA---SGSSDNTIKI 1245 Query: 419 YSIDLNGRNETL 430 + +TL Sbjct: 1246 WDTASGTCTQTL 1257 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 19/243 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + FSP+ Q+VA + D + + DT + + + + Sbjct: 835 QTLEGHGSSVLSVAFSPDGQRVASGSDDK----TIKIWDTASGTGTQTLEGHGGSVWSVA 890 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDRE 323 FS +G+R S D+ + I+ D S + L +S ++SPD ++ S Sbjct: 891 FSPDGQRVA-SGSDDKTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGS--- 944 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G + + + + + + S + +SP G +A I + Sbjct: 945 GDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA---SGSGDKTIKIWDTASGTC 1001 Query: 384 RLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +E + +SP G+ + D K++ +TL + Sbjct: 1002 TQTLEGHGNSVWSVAFSPDGQRVASGSD---DKTIKIWDTASGTCTQTLEGHGGWVQSVA 1058 Query: 442 WVG 444 + Sbjct: 1059 FSP 1061 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 23/256 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEP--------RFSPNQQKV--AYATYDDED 235 I+ L + RDG R+ R I P F+P + + + Sbjct: 762 GHTIRGRLIAIVRDGY--RFALSYRMIIEKAPLQAYTSALVFAPTDSMIKKIFKKEEPGW 819 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I + +++ + + + S +L+ FS +G+R S D+ + I+ D S Sbjct: 820 ISTISVVEAEWNACTQTLEGHGSSVLSVAFSPDGQRVA-SGSDDKTIKIW--DTASGTGT 876 Query: 296 R-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + L S ++SPD ++ SD + + + + + + +S + Sbjct: 877 QTLEGHGGSVWSVAFSPDGQRVASGSD---DKTIKIWDAASGTCTQTLEGHGSSVLSVAF 933 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 SP G +A + + I + L ++ + +SP G+ + GD Sbjct: 934 SPDGQRVA-SGSGDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDGQRVA---SGSGDK 989 Query: 415 GSKLYSIDLNGRNETL 430 K++ +TL Sbjct: 990 TIKIWDTASGTCTQTL 1005 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 16/220 (7%) Query: 170 KGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G + + F + V SG +++ + D ++ FSP+ Q+VA Sbjct: 1050 HGGWVQSVAFSPDGQRVASGSNDHTIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQRVA 1109 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + D + + D + + + + FS +G+R S D + I+ Sbjct: 1110 SGSDDH----TIKIWDAASGTCTQTLEGHGDSVWSVAFSPDGQRVA-SGSIDGTIKIW-- 1162 Query: 288 DLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D S + L S ++SPD ++ S + + + + + Sbjct: 1163 DAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHG 1219 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +SP G +A I + Sbjct: 1220 GWVHSVAFSPDGQRVASGSSDNT---IKIWDTASGTCTQT 1256 >gi|313148096|ref|ZP_07810289.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136863|gb|EFR54223.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1081 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + +P + S +G + D IY V +LT + Sbjct: 3 LTTLTGNAASPLWMRDVQISPDGTEIAFCYKGD----IYKVPAGGGVATQLTTQPSYECT 58 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPDS QI F SDR G +++M + G +R++ + AS ++P G I F+ Sbjct: 59 PIWSPDSKQIAFASDRNGNFDIFIMPATGGTAQRLTTNS-ASELPSTFTPDGKYILFSAS 117 Query: 367 SGEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 + + + +G + ++ +A ++ SG ++ +K Sbjct: 118 IQDPAQSAMFPTTAMTELYKVPSNGGRTEQVLGTP-AEAVCYATSGEFFLYQDRKGFEDE 176 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P Sbjct: 177 WRKHHTSSITRDIWMYNTKTGKHTNLTNHAGEDRNPILSP 216 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 33/238 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S + K+ + + Sbjct: 21 ISPDGTEIAFCY--KGDIYKV----PAGGGVATQLTTQPSYECTPIWSPDSKQIAFASDR 74 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ----------- 327 + DI+ + +RLT + ++++PD I+F + + Q Sbjct: 75 NGNFDIFIMPATGGTAQRLTTNSASELPSTFTPDGKYILFSASIQDPAQSAMFPTTAMTE 134 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIGV 375 LY + SNG +++ A S G+ + S I + Sbjct: 135 LYKVPSNGGRTEQVL-GTPAEAVCYATS--GEFFLYQDRKGFEDEWRKHHTSSITRDIWM 191 Query: 376 MKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + L + P SP G+S+ +++G + +D +T+ + Sbjct: 192 YNTKTGKHTNLTNHAGEDRNPILSPDGKSVYILSEREGSFNVYNFPLDNTQSLKTVTS 249 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 104/285 (36%), Gaps = 34/285 (11%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 F + ++ V +R+L+ S D L ++ + + Y + + Sbjct: 231 FNVYNFPLDNTQSLKTVTSFKTHPVRFLSMSHDGTLC---YAYDGE--IYTQKGNATPQK 285 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + R D+ F + + S +GK+ V+ +++ T+++T Sbjct: 286 TDIDIVRDDQDKIADLTFTNGATSGTVSPDGKQIAFIVRG----EVFVTSTDYATTKQIT 341 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEA 347 T +++PD+ + + S+R G QL++ + ++K + Sbjct: 342 QTPAREAGLTFAPDNRTLAYASERNGNWQLFLAKIARKEEANFPNATIIEEKVLLPSTTV 401 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSG 401 P +SP G +AF + + V+ D + R + + S + WSP G Sbjct: 402 ERAYPQFSPDGKELAFIEDRN---RLMVVNLDTKKVRQITDGSTWFSTDGNFDYQWSPDG 458 Query: 402 RS--LIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQW 442 + L F + D S + + G + L N+ + P+W Sbjct: 459 KWFTLEFIGNRH-DPYSDIGLVSAQGGSPIINLTNSGYMSGSPRW 502 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + F+ + + + + Sbjct: 311 TVSPDGKQIAFIVRGE------VFVTSTDYATTKQITQTPAREAGLTFAPDNRTLAYASE 364 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFIN------------ISASYSPDSSQIVFESDREGK 325 ++ ++ + N I +SPD ++ F DR Sbjct: 365 RNGNWQLFLAKIARKEEANFPNATIIEEKVLLPSTTVERAYPQFSPDGKELAFIEDR--- 421 Query: 326 EQLYVMQSNGSDQKRISQDKEA----SYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ FD WSP G + F + + IG++ Sbjct: 422 NRLMVVNLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIGLVSA 481 Query: 379 DGSQERL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G + L + +P W+ G +++F+ ++ G Sbjct: 482 QGGSPIINLTNSGYMSGSPRWALDGNAILFTTERYG 517 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 103/300 (34%), Gaps = 41/300 (13%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 T + +I F S+ + + +M G + LT + F+P+ + Sbjct: 57 CTPIWSPDSKQIAFASDRNGN----FDIFIMPATGGTAQRLTTNSAS-ELPSTFTPDGKY 111 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFR---SMILAPR----FSSNGKRALISVQK 278 + ++ + T + K N ++ P ++++G+ L +K Sbjct: 112 ILFSASIQDPAQSAMFPTTAMTELYKVPSNGGRTEQVLGTPAEAVCYATSGEFFLYQDRK 171 Query: 279 DE------------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 DI+ + ++ LTN + + SPD + S+REG Sbjct: 172 GFEDEWRKHHTSSITRDIWMYNTKTGKHTNLTNHAGEDRNPILSPDGKSVYILSEREGSF 231 Query: 327 QLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDL------IAFT---KFSGEKFAIGVM 376 +Y + + K ++ K S G L +T + +K I ++ Sbjct: 232 NVYNFPLDNTQSLKTVTSFKTHPVRFLSMSHDGTLCYAYDGEIYTQKGNATPQKTDIDIV 291 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPA 435 + D + L + + T SP G+ + F + +++ + + + TPA Sbjct: 292 RDDQDKIADLTFTNGATSGTVSPDGKQIAFIVR------GEVFVTSTDYATTKQITQTPA 345 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 33/230 (14%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + ++ P +SP+ +++A+A+ + + +++M +R+ + Sbjct: 42 GGGVATQLTTQPSYECTPIWSPDSKQIAFASDRNGN-FDIFIM-PATGGTAQRLTTNSAS 99 Query: 260 ILAPRFSSNGKRALISVQKDEAMD-----------IYSVDLQSNATERLTNTLFINISAS 308 L F+ +GK L S + +Y V TE++ T + Sbjct: 100 ELPSTFTPDGKYILFSASIQDPAQSAMFPTTAMTELYKVPSNGGRTEQVLGTPAEAV--C 157 Query: 309 YSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 Y+ +++ DR+G +++ + ++ + +P+ S Sbjct: 158 YATSGEFFLYQ-DRKGFEDEWRKHHTSSITRDIWMYNTKTGKHTNLT-NHAGEDRNPILS 215 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW---SPSGR 402 P G + F + D +Q V + S G Sbjct: 216 PDGKSVYILSEREGSFNVYNFPLDNTQSLKTVTSFKTHPVRFLSMSHDGT 265 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 77/366 (21%), Positives = 141/366 (38%), Gaps = 55/366 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEK 170 G V +GK V ++ V K+ +PA R+ T + D + Sbjct: 310 GTVSPDGKQIAFIVRGEVF-VTSTDYATTKQITQTPA--REAGLTFAPDNRTLAYASERN 366 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + ++ + ++ + L PS P+FSP+ +++A+ Sbjct: 367 GNWQLFLAKIARKEEANFPNATII-------EEKVLLPSTTVERAYPQFSPDGKELAF-- 417 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRA---LISVQKDEAMDIY 285 +D + L V +DT+ R + S ++S +GK I + D DI Sbjct: 418 IEDRNRLMVVNLDTKKVRQITDGSTWFSTDGNFDYQWSPDGKWFTLEFIGNRHDPYSDIG 477 Query: 286 SVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q + LTN+ +++ S ++ D + I+F ++R G L + Sbjct: 478 LVSAQGGSPIINLTNSGYMSGSPRWALDGNAILFTTERYGMRAHASWGSQNDAMLVFLNQ 537 Query: 334 NGSDQKRIS---------------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK 378 + D+ R+S +DKE + D + D A T+ E I V++ Sbjct: 538 DAFDKFRLSKEDYELQKELEKEQQKDKEKASTDLKKDKKKDPKAETEKKDEVKTI-VVEL 596 Query: 379 DG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--T 433 +G RL SNL + S G +L + +G G L+ +DL + L++ Sbjct: 597 NGLEDRIIRLTPNSSNLGSTIISKDGETLYYLSAFEG--GFDLWKMDLRKKETKLLHKMN 654 Query: 434 PAYASD 439 +AS Sbjct: 655 AGWASM 660 >gi|237724330|ref|ZP_04554811.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437199|gb|EEO47276.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 1074 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQDKEASYFDP-----------VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ + D W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMPEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQNIIPMWIG 226 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 106/274 (38%), Gaps = 44/274 (16%) Query: 201 ANIRY-----LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 NIR +T D + P S N Q + Y E +Y +D + ++ K Sbjct: 244 YNIRTKQTEKVTNYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISIT 296 Query: 256 FRSMIL--------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 S + A S +G R +++ + +++ + + T +T T Sbjct: 297 LTSDNIYARKEMKRVADNLTAASLSPDGHRLVVTARG----EVFDIPAEKGVTRDITRTP 352 Query: 302 F-INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP Sbjct: 353 GANEREGEWSPNGKQIAYISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 I +T I + +R ++++ +SP + + +++ + S + Sbjct: 413 ILYTDRKN---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVI 468 Query: 419 YSIDLNGRNETLIN-------TPAYASDPQWVGF 445 Y L E + +P +++D +++ F Sbjct: 469 YVYHLTSGKEYPVTEKWYSSSSPVFSTDGKYLIF 502 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMPEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQNIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 98/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMI-------LAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNNRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMPEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--ED 389 + I+ + + P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENITNNIAQNII-PMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTNYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 117/345 (33%), Gaps = 47/345 (13%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++D+ K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLVVTARGEVFDIPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRIS 342 Y L S +T + + S +S D ++F S+R+ + + Sbjct: 469 YVYHLTSGKEYPVTEKWYSSSSPVFSTDGKYLIFSSERDFNPIYSQTEWNHAYNRMGGVY 528 Query: 343 QDKEASYFDPVWSPQGDLIAFTKF-----------SGEKFAIGVMKKDGSQERLLVEDSN 391 A+ P ++++ + + I G +L ++ N Sbjct: 529 MAMLANDTPSPLLPSDEMVSIEQQTTDAANKKPEATNNTVKIDPEGLPGRLIKLPLQAGN 588 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 + G+ + ++ + +K+Y DL + E ++ AY Sbjct: 589 YDN--FYSDGKKVWYASGRS----TKVY--DLAKQKEEIVAEGAY 625 >gi|297161910|gb|ADI11622.1| hypothetical protein SBI_08504 [Streptomyces bingchenggensis BCW-1] Length = 1078 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 92/250 (36%), Gaps = 35/250 (14%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++ ++ V R A + P FS +GK I + Sbjct: 77 SPSGDRLV------AEVQNVLWSLPRKGGAATALTPPDLEPTRPVFSPDGKLLAICAYRG 130 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK------EQLYVMQS 333 ++++ + + T+ + + ++SPD ++I F S+R G +++V++ Sbjct: 131 GGFHLWTLRPDGSDVRQRTDGPWDDRGPAWSPDGTRIAFASERGGDTVAGSPYRVWVLEV 190 Query: 334 NGSDQKRIS---------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-----GVMKKD 379 + R++ QD FDP WSP G+ + F + A+ ++ D Sbjct: 191 ATGELTRLTGVPGQDGPLQDGVWEDFDPAWSPDGERVLFVRGRLTGAALDARTVASVRAD 250 Query: 380 GSQERLL-----VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 GS + + AP+ SP G +L + R S +D + Sbjct: 251 GSGPVAVEHTEAAAGVQVLAPSVSP-GGTLAYLRTTPAPDASCTLVVDGA---AVPVEGD 306 Query: 435 AYASDPQWVG 444 P+W G Sbjct: 307 VQPVPPRWTG 316 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 97/302 (32%), Gaps = 42/302 (13%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + + + ++ + + D D + P SP+ + Sbjct: 329 RLVRPEAPGGGEEIPFKAALPVDRPRYRVKQYDFDSGGGARPVRG----VHLPALSPDGR 384 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRI--GNFRSMILAPRFSSNGKRALISVQKDEAM 282 KVA+A + +++ T R P+RI + +L P ++ +G+ + + +D + Sbjct: 385 KVAFAALN-----SLWVAGTTGGRGPRRIVRASPTRYLLGPTWTPDGRALIYADDRDGLL 439 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++ DL S T + + SP ++ D G L + + Sbjct: 440 AVHRRDLASGEET--TLASGGRVHPALSPAGDRLA-CIDMSGNLVLRDLAAGTERTLAAP 496 Query: 343 QDKEASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERLLV-------E 388 P WSP G IA+ +F I ++ RL Sbjct: 497 LGGGGLPGRPSWSPDGRFIAYCDRNRLNQRFREGYNLIRIVDAGSGAARLYALAPHTSLS 556 Query: 389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL------NGRNETLINTPAYASDPQW 442 D P WSP GR L + S L+ + + +G L A P W Sbjct: 557 DRYDSGPVWSPDGRHLAVIAE------SALWLLPVRPDGTPDGEPRRLTEDSAD--HPSW 608 Query: 443 VG 444 G Sbjct: 609 SG 610 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 29/252 (11%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 L S + ++N L + R G LTP D P FSP+ + +A Y Sbjct: 76 LSPSGDRLVAEVQNVLWSLPRKGGAATALTP-PDLEPTRPVFSPDGKLLAICAYR-GGGF 133 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM------DIYSVDLQS 291 ++ + +R + P +S +G R + ++ ++ +++ + Sbjct: 134 HLWTLRPDGSDVRQR-TDGPWDDRGPAWSPDGTRIAFASERGGDTVAGSPYRVWVLEVAT 192 Query: 292 NATERLT----------NTLFINISASYSPDSSQIVFESDREGKEQL-----YVMQSNGS 336 RLT + ++ + ++SPD +++F R L ++++GS Sbjct: 193 GELTRLTGVPGQDGPLQDGVWEDFDPAWSPDGERVLFVRGRLTGAALDARTVASVRADGS 252 Query: 337 DQKRISQDKEAS---YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 + + A+ P SP G +A+ + + A + DG+ + D Sbjct: 253 GPVAVEHTEAAAGVQVLAPSVSPGGT-LAYLRTTPAPDASCTLVVDGAAVPV-EGDVQPV 310 Query: 394 APTWSPSGRSLI 405 P W+ G L+ Sbjct: 311 PPRWTGGGELLL 322 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 59/341 (17%), Positives = 105/341 (30%), Gaps = 98/341 (28%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRID 247 L + DG+++R T P +SP+ ++A+A+ D RV++++ Sbjct: 135 LWTLRPDGSDVRQRTDG-PWDDRGPAWSPDGTRIAFASERGGDTVAGSPYRVWVLEVATG 193 Query: 248 RAPKRIGNFRSM----------ILAPRFSSNGKRALI----------------SVQKDEA 281 R+ P +S +G+R L SV+ D + Sbjct: 194 ELT-RLTGVPGQDGPLQDGVWEDFDPAWSPDGERVLFVRGRLTGAALDARTVASVRADGS 252 Query: 282 MDIYSVDLQ--------------SNATERLTNTLFINISASYSPDSSQIVFESD------ 321 + + L T + S + D + + E D Sbjct: 253 GPVAVEHTEAAAGVQVLAPSVSPGGTLAYLRTTPAPDASCTLVVDGAAVPVEGDVQPVPP 312 Query: 322 -----------REGKEQLYVMQSNGSDQ-----------------KRISQDKEASYFD-- 351 G+ +L ++ G + K+ D Sbjct: 313 RWTGGGELLLTVGGRFRLVRPEAPGGGEEIPFKAALPVDRPRYRVKQYDFDSGGGARPVR 372 Query: 352 ----PVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-QERLLVE---DSNLQAPTWSPSGRS 403 P SP G +AF + ++ V G R +V L PTW+P GR+ Sbjct: 373 GVHLPALSPDGRKVAFAALN----SLWVAGTTGGRGPRRIVRASPTRYLLGPTWTPDGRA 428 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 LI++ +DG ++ DL ET + + P Sbjct: 429 LIYADDRDG--LLAVHRRDLASGEETTLASGGRV-HPALSP 466 >gi|3023956|sp|Q00808|HETE1_PODAN RecName: Full=Vegetative incompatibility protein HET-E-1 gi|607003|gb|AAA85775.1| beta transducin-like protein [Podospora anserina] Length = 1356 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 90/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG +++ + D + FSP+ Q+VA + D + + Sbjct: 938 QRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDK----TIKI 993 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 DT + + + + FS +G+R S D+ + I+ D S + L Sbjct: 994 WDTASGTCTQTLEGHGGSVWSVAFSPDGQRVA-SGSDDKTIKIW--DTASGTCTQTLEGH 1050 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S +SPD ++ SD + + + + + S + +SP G Sbjct: 1051 GGWVQSVVFSPDGQRVASGSD---DHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR 1107 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E + + +SP G+ + S DG K+ Sbjct: 1108 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVA-SGSIDGT--IKI 1161 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + + Sbjct: 1162 WDAASGTCTQTLEGHGGWVQSVAFSP 1187 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP+ Q+VA + D + + Sbjct: 980 QRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDK----TIKI 1035 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 DT + + + + FS +G+R S D + I+ D S + L Sbjct: 1036 WDTASGTCTQTLEGHGGWVQSVVFSPDGQRVA-SGSDDHTIKIW--DAVSGTCTQTLEGH 1092 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + +SP G Sbjct: 1093 GDSVWSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQR 1149 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A G I + +E +Q+ +SP G+ + D K+ Sbjct: 1150 VASGSIDGT---IKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVA---SGSSDKTIKI 1203 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + + Sbjct: 1204 WDTASGTCTQTLEGHGGWVQSVAFSP 1229 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 92/263 (34%), Gaps = 19/263 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D ++ FSP++++VA + D + + Sbjct: 854 QRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDK----TIKI 909 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + FS +G+R S D + I+ D S + L Sbjct: 910 WDAASGTCTQTLEGHGGRVQSVAFSPDGQRVA-SGSDDHTIKIW--DAASGTCTQTLEGH 966 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +S ++SPD ++ S G + + + + + + S + +SP G Sbjct: 967 GSSVLSVAFSPDGQRVASGS---GDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQR 1023 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A + + I + L +Q+ +SP G+ + D K++ Sbjct: 1024 VA-SGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSD---DHTIKIWD 1079 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 ++G + + W Sbjct: 1080 A-VSGTCTQTLEGHGDS---VWS 1098 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 83/250 (33%), Gaps = 15/250 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG ++ + D + FSP+ Q+VA + D + + Sbjct: 1022 QRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDH----TIKI 1077 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + FS +G+R S D + I+ D S + L Sbjct: 1078 WDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVA-SGSIDGTIKIW--DAASGTCTQTLEGH 1134 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + +SP G Sbjct: 1135 GGWVHSVAFSPDGQRVASGSI---DGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQR 1191 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 +A + S + I + L +Q+ +SP G+ + D K++ Sbjct: 1192 VA-SGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVA---SGSSDNTIKIWD 1247 Query: 421 IDLNGRNETL 430 +TL Sbjct: 1248 TASGTCTQTL 1257 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 27/272 (9%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEP--------RFSPNQQKV--AYATYDDED 235 I+ L + RDG R+ R I P F+P + + + Sbjct: 762 GHTIRGRLIAIVRDGY--RFALSYRMIIEKAPLQAYTSALVFAPTDSMIKKIFKKEEPGW 819 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 I + +++ + + + S +L+ FS++G+R S D+ + I+ D S Sbjct: 820 ISTISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVA-SGSDDKTIKIW--DTASGTGT 876 Query: 296 R-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + L S ++SPD ++ SD + + + + + + + Sbjct: 877 QTLEGHGGSVWSVAFSPDRERVASGSD---DKTIKIWDAASGTCTQTLEGHGGRVQSVAF 933 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDG 412 SP G +A + I + +E S++ + +SP G+ + G Sbjct: 934 SPDGQRVA---SGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVA---SGSG 987 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D K++ +TL + Sbjct: 988 DKTIKIWDTASGTCTQTLEGHGGSVWSVAFSP 1019 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 34/233 (14%) Query: 170 KGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G + + F + V SG I ++ + D + FSP+ Q+VA Sbjct: 1134 HGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVA 1193 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + D + + DT + + + + FS +G+R S D + I+ Sbjct: 1194 SGSSDK----TIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVA-SGSSDNTIKIW-- 1246 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN------------- 334 D S + N S+ + + + G+ Q+ Sbjct: 1247 DTASGTCTQTLNVGSTATCLSFDYTN---AYINTNIGRIQIATATMESLNQLSSPVCYSY 1303 Query: 335 --GSDQKRISQDKEASYFDP------VWSPQGDLIAFTKFSGEKFAIGVMKKD 379 G D + I+ + + + P ++ QG I +SG + I + +D Sbjct: 1304 GLGQDHRWITCNNQNVLWLPPEYHTSAFTMQGRKIVLGSYSG-RIIIFLFSRD 1355 >gi|154290642|ref|XP_001545913.1| hypothetical protein BC1G_15641 [Botryotinia fuckeliana B05.10] gi|150847472|gb|EDN22665.1| hypothetical protein BC1G_15641 [Botryotinia fuckeliana B05.10] Length = 674 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 103/326 (31%), Gaps = 54/326 (16%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y ++F++ S ++L + + DG+N R L + + FSP+ Sbjct: 48 YPRAGTGAAPGKKGVMFMNRIAPS---VSTLYIANADGSNERELLGNSSSYDYHGNFSPD 104 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEA 281 + V + T + D + + S A S +G S Q + Sbjct: 105 GKYVIFTTERNGDGQSDIYRVKVDGTGLESLVETPSFEDAGVLSPDGTTLAYVSTQGNFT 164 Query: 282 MDIYSVDLQSNATERLTNTL---FINI------SASYSPDSSQIVFESDR---------- 322 +I+ DL + LTNT N S+SPD I F SDR Sbjct: 165 ANIWVKDLTTGVAFNLTNTPTTAGDNALPDGHFRPSFSPDGEWIAFSSDRNTAWTGHSNG 224 Query: 323 EGKEQ-----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-FAIGVM 376 G E +Y ++ NGSD ++ S P WSP G I F + + E + + Sbjct: 225 TGWEHTQELSVYKIRPNGSDFSQVVTKAGYSLGSPKWSPDGSRIIFYEMTRENTYNAHMT 284 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET------- 429 D ++ ++ D + + + + D+ G N Sbjct: 285 SVDSAETQIASVDVATGL-------DYVYHTSGVGCKVNGQFVTADVVGFNTKGSTDDNI 337 Query: 430 -----------LINTPAYASDPQWVG 444 +P W Sbjct: 338 GINYNGTGAANYTTILGDMRNPAWSP 363 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 88/247 (35%), Gaps = 46/247 (18%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALISV------QKDE 280 T + + + D G + A P ++++G+ + + E Sbjct: 422 VTMNPDGTDLDLVFDVFSTNQTSSAGTSSGLAGAFQPSWTADGEWITFGLGYWFFERSIE 481 Query: 281 AMDIYSVDLQSNATERLTNTLF---INISASYSPDSSQIVFESDREGKE------QLYVM 331 IY V + E+LT SYSPD ++IV+ RE L ++ Sbjct: 482 PGWIYRVAANGSYYEQLTFGEAGVSNAGFPSYSPDGTKIVY---RECGPAPLYCIGLRIL 538 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQ 382 ++ + P WSP G+ I FT+ + + + + + +G+ Sbjct: 539 NLADGTVTNLT---DTWDNTPGWSPDGERIVFTRRNHLNFDDLSSTDSYDVYTIFPNGTG 595 Query: 383 E-RLLVEDSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNET 429 ++ +N WS GR +++S G ++ S++ +G N+T Sbjct: 596 LTQVTTSGANDAHAVWSADGR-ILYSSGMYGFREESPLYDNAFQPYGQIISMNFDGSNKT 654 Query: 430 LINTPAY 436 ++ + Sbjct: 655 MLTDSMW 661 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 29/176 (16%) Query: 193 LCVMDRDGANIRYLTPSRDQI--LFEPRFSPNQQKVAYATYDDEDILRVYLMDTR-IDRA 249 + + +G+ LT + P +SP+ K+ Y + + L D Sbjct: 485 IYRVAANGSYYEQLTFGEAGVSNAGFPSYSPDGTKIVYRECGPAPLYCIGLRILNLADGT 544 Query: 250 PKRIGNFRSMILAPRFSSNGKRALIS---------VQKDEAMDIYSVDLQSNATERLTNT 300 + + P +S +G+R + + + ++ D+Y++ ++T + Sbjct: 545 VTNLTDTWDNT--PGWSPDGERIVFTRRNHLNFDDLSSTDSYDVYTIFPNGTGLTQVTTS 602 Query: 301 LFINISASYSPDSSQIVFESDREG--------------KEQLYVMQSNGSDQKRIS 342 + A +S D +I++ S G Q+ M +GS++ ++ Sbjct: 603 GANDAHAVWSADG-RILYSSGMYGFREESPLYDNAFQPYGQIISMNFDGSNKTMLT 657 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 95/285 (33%), Gaps = 64/285 (22%) Query: 214 LFEPRFSPNQQKVAYAT--------------YDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 F P FSP+ + +A+++ ++ L VY + + + Sbjct: 196 HFRPSFSPDGEWIAFSSDRNTAWTGHSNGTGWEHTQELSVYKIRPNGSDFSQVVTKAGYS 255 Query: 260 ILAPRFSSNGKRALI-------------SVQKDEAMDIYSVDLQSN-ATERLTNTLFINI 305 + +P++S +G R + + I SVD+ + T+ + + Sbjct: 256 LGSPKWSPDGSRIIFYEMTRENTYNAHMTSVDSAETQIASVDVATGLDYVYHTSGVGCKV 315 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + + + + F + + + + NG+ + +P WSP G L+ + K Sbjct: 316 NGQFV-TADVVGFNTKGSTDDNIGI-NYNGTGAANYTTIL-GDMRNPAWSPDGTLVIYEK 372 Query: 366 FSGEKFAIG---VMKKDGSQERLLVE-----------------DSNLQAPTWSPSGRSL- 404 + + DG E + N T +P G L Sbjct: 373 TDFDPVRPMEKPLYSWDGDYEYRFTDVFPMLSKQNKLAITQKQLGNSSIVTMNPDGTDLD 432 Query: 405 ----IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 +FS + G+ S L G + P++ +D +W+ F Sbjct: 433 LVFDVFSTNQTSSAGT---SSGLAGAFQ-----PSWTADGEWITF 469 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 24/127 (18%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDD--------EDILRVYLMDTRIDRAPKRIGNF 256 +T D P +SP+ +++ + + D VY + + + Sbjct: 544 TVTNLTDTWDNTPGWSPDGERIVFTRRNHLNFDDLSSTDSYDVYTIFPNGTGLTQ-VTTS 602 Query: 257 RSMILAPRFSSNGKRALISVQKDEAM--------------DIYSVDLQSNATERLTNTLF 302 + +S++G R L S I S++ + LT++++ Sbjct: 603 GANDAHAVWSADG-RILYSSGMYGFREESPLYDNAFQPYGQIISMNFDGSNKTMLTDSMW 661 Query: 303 INISASY 309 + Y Sbjct: 662 EDSMPLY 668 >gi|148554692|ref|YP_001262274.1| amidohydrolase [Sphingomonas wittichii RW1] gi|148499882|gb|ABQ68136.1| amidohydrolase [Sphingomonas wittichii RW1] Length = 1014 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 13/231 (5%) Query: 223 QQKVAYATYDDEDILRVYLMD-----TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 A A D L + L I P +S +G+ Sbjct: 37 GTNFAVAAARDGRSLAIDLQGRLWVLPATGGKATPITPVMDEARYPVWSPDGRWIAFQYY 96 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 DE I V + + +T + + S+ PD I+F SDR L+ + + Sbjct: 97 TDENWHIAVVRPDGSELKVVTRGPYDDREPSWRPDGKAILFSSDRTRSLDLWQVTLDDGV 156 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 Q ++ +A + P SP G A+ + +G ++ ++++ G L+ ++ W Sbjct: 157 QTSVTS-GDADDYHPAVSPDGGRTAYVQGTGRTTSL-IVEEAGKARTLVSGKLSISRLHW 214 Query: 398 SPSGRSL--IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP---QWV 443 SP G + I + GD L+ +G+ + P P W+ Sbjct: 215 SPDGSRISAILFDYERGDARVALFDA-ASGKEVASHSRPGEDIFPTGASWL 264 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 101/270 (37%), Gaps = 40/270 (14%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 V DG IR TP D + P A+ D + + T P Sbjct: 270 VYGADGG-IRVWTPQGDTVAKRP------FTAAFTVQDAPVYRKREIDLTSTGDRPVL-- 320 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 IL P S +G+ + + ++ + + +LT+ F+++ ++S D Sbjct: 321 ----GILRPTTSPDGRHVAFTAMGN----LWMLTVGDPKPVQLTHDHFLDVDPTWSRDGQ 372 Query: 315 QIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + + SDR G LY+ ++R++Q +E P +SP G +A + + Sbjct: 373 WLAYVSDRRGTGTMDLYLRNVATGAERRLTQTEE-DLMQPSFSPDGKSVAVFMRNSADWH 431 Query: 373 ---IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSL------IFS-RKKDGDTGSKLYSI 421 + ++ + + P+WS GR + ++S R + GD ++I Sbjct: 432 GATLYLVDVATGAMKKAHDALFLPSVPSWSADGRKISVLALRVYSNRFRKGDNAF--FTI 489 Query: 422 DLN---GRNETLINTPAYASD----PQWVG 444 DL+ G + + + +S P W Sbjct: 490 DLDSGKGHFTSPVADRSISSRSQFGPVWSP 519 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 90/256 (35%), Gaps = 17/256 (6%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 + L V+ G +TP D+ P +SP+ + +A+ Y DE+ + Sbjct: 56 QGRLWVLPATGGKATPITPVMDE-ARYPVWSPDGRWIAFQYYTDENWHIAVVRPD--GSE 112 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + P + +GK L S + ++D++ V L +T+ + + Sbjct: 113 LKVVTRGPYDDREPSWRPDGKAILFSSDRTRSLDLWQVTLDDGVQTSVTSGDADDYHPAV 172 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG- 368 SPD + + G+ +++ G + +S + S WSP G I+ F Sbjct: 173 SPDGGRTAYV-QGTGRTTSLIVEEAGKARTLVS--GKLSISRLHWSPDGSRISAILFDYE 229 Query: 369 -EKFAIGVMKKDGSQER----LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + +E ED +W R L++ D G ++++ Sbjct: 230 RGDARVALFDAASGKEVASHSRPGEDIFPTGASWL-DARHLVY----GADGGIRVWTPQG 284 Query: 424 NGRNETLINTPAYASD 439 + + D Sbjct: 285 DTVAKRPFTAAFTVQD 300 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 19/228 (8%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G + +P +S + Q +AY + + A +R+ Sbjct: 348 GDPKPVQLTHDHFLDVDPTWSRDGQWLAYVSDRRGTGTMDLYLRNVATGAERRLTQTEED 407 Query: 260 ILAPRFSSNGKRALISVQKD---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ P FS +GK + ++ +Y VD+ + A ++ + LF+ S+S D +I Sbjct: 408 LMQPSFSPDGKSVAVFMRNSADWHGATLYLVDVATGAMKKAHDALFLPSVPSWSADGRKI 467 Query: 317 ------VFESD-REGKEQLYVMQSNGSDQKRISQDKE-----ASYFDPVWSPQGDLIAFT 364 V+ + R+G + + + S + S F PVWSP G +A+ Sbjct: 468 SVLALRVYSNRFRKGDNAFFTIDLDSGKGHFTSPVADRSISSRSQFGPVWSPDGTRMAYI 527 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKK 410 G ++ V D + V+ S A P+WS RSL + + Sbjct: 528 H-EGLLWSAAV-DADANIIEPPVQLSRDYASYPSWSGDSRSLTYLAGR 573 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 35/279 (12%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + D ++ S D + P SP+ + AY + + Sbjct: 146 DLWQVTLD-DGVQTSVTSGDADDYHPAVSPDGGRTAYVQGTGRTTSLI----VEEAGKAR 200 Query: 252 RIGNFRSMILAPRFSSNGKR---ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + + I +S +G R L ++ + D S + +I + Sbjct: 201 TLVSGKLSISRLHWSPDGSRISAILFDYER-GDARVALFDAASGKEVASHSRPGEDIFPT 259 Query: 309 -----------YSPDSSQIVFE------SDREGKEQLYVMQSNGSDQKRI--SQDKEASY 349 Y D V+ + R V + ++ I + + Sbjct: 260 GASWLDARHLVYGADGGIRVWTPQGDTVAKRPFTAAFTVQDAPVYRKREIDLTSTGDRPV 319 Query: 350 FD---PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 P SP G +AFT G + + V +L + PTWS G+ L + Sbjct: 320 LGILRPTTSPDGRHVAFTAM-GNLWMLTVGDP--KPVQLTHDHFLDVDPTWSRDGQWLAY 376 Query: 407 SRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + G LY ++ G L T P + Sbjct: 377 VSDRRGTGTMDLYLRNVATGAERRLTQTEEDLMQPSFSP 415 >gi|75908402|ref|YP_322698.1| peptidase C14 [Anabaena variabilis ATCC 29413] gi|75702127|gb|ABA21803.1| Peptidase C14, caspase catalytic subunit p20 [Anabaena variabilis ATCC 29413] Length = 1557 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 122/336 (36%), Gaps = 47/336 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS----------SPASWRKIAHTISDD-- 161 GR++ D RLWDV + IG+ F SP R ++ + + Sbjct: 1079 GRIVSGSNDN---TIRLWDVNGQP--IGQPFRGHEGGVNSVAFSPDGGRIVSGSYDNTVR 1133 Query: 162 --------IYQSITGEKGDFNSRILFVSE-SVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 I Q G +G NS +VSG N++ + D +G I + Sbjct: 1134 LWDVNGQPIGQPFRGHEGGVNSVAFSPDGGRIVSGSNDNTIRLWDMNGQPIGQPFRGHED 1193 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 +++ FSP+ ++ +YD + L D + M+L+ FS +G R Sbjct: 1194 MVYSVAFSPDGGRIVSGSYDK----TIRLWDMNGQPIGQPFRGHEDMVLSVAFSPDGGRI 1249 Query: 273 LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + S D + ++ + QS R + S ++SPD +IV S+ + + Sbjct: 1250 V-SGSYDNTVRLWEANGQSIGQPFR--GHENLVNSVAFSPDGGRIVSGSN---DNTIRLW 1303 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-- 389 NG + + E + +SP G I I + +G Sbjct: 1304 DVNGQPIGQPFRGHEGRVYSVAFSPDGGRIVSGSNDNT---IRLWDVNGQPIGQPFRGHE 1360 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + + +SP G ++ G + + D+NG Sbjct: 1361 NLVYSVAFSPDGGRIV-----SGSWDNTIRLWDVNG 1391 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 106/321 (33%), Gaps = 46/321 (14%) Query: 109 QVLVTGRVIKEGK----DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 ++ + +G RLWD+ + IG+ F D + Sbjct: 1193 DMVYSVAFSPDGGRIVSGSYDKTIRLWDMNGQP--IGQPFRGHE-----------DMVLS 1239 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 G +VSG N++ + + +G +I + ++ FSP+ Sbjct: 1240 VAFSPDGG----------RIVSGSYDNTVRLWEANGQSIGQPFRGHENLVNSVAFSPDGG 1289 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 ++ + D+ + L D + + + FS +G R + S D + + Sbjct: 1290 RIVSGSNDN----TIRLWDVNGQPIGQPFRGHEGRVYSVAFSPDGGRIV-SGSNDNTIRL 1344 Query: 285 YSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 + V+ Q R + S ++SPD +IV S + + NG R + Sbjct: 1345 WDVNGQPIGQPFR--GHENLVYSVAFSPDGGRIVSGS---WDNTIRLWDVNGQPIGRPFR 1399 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSG 401 E + +SP G I + I + +G + +SP G Sbjct: 1400 GHENVVYSVAFSPDGGRIVSGSWDNT---IRLWDVNGQSIGQPFRGHEDWVRSVAFSPDG 1456 Query: 402 RSLIFSRKKDGDTGSKLYSID 422 ++ D +L+ ++ Sbjct: 1457 GRIVSGSD---DKTLRLWDVN 1474 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 98/320 (30%), Gaps = 48/320 (15%) Query: 112 VTGRVIKEGKDRLRV------EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 V V + V ++W+ + ++ + Sbjct: 942 VVYSVAFSPDGKKLVIGDSKGTIQVWETFSGRVLLFLQ---------------------- 979 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 E G + +VSG N++ + D +G I + + FSP+ + Sbjct: 980 -GHENGVKSVAFSPDGGRIVSGSNDNTIRLWDVNGQPIGQPFRGHEGGVNSVAFSPDGGR 1038 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + + D+ + L D + + + FS +G R + S D + ++ Sbjct: 1039 IVSGSNDN----TIRLWDVNGQPIGQPFRGHEGGVNSVAFSPDGGRIV-SGSNDNTIRLW 1093 Query: 286 SVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 V+ Q R S ++SPD +IV S + + NG + + Sbjct: 1094 DVNGQPIGQPFR--GHEGGVNSVAFSPDGGRIVSGSY---DNTVRLWDVNGQPIGQPFRG 1148 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGR 402 E +SP G I I + +G + +SP G Sbjct: 1149 HEGGVNSVAFSPDGGRIVSGSNDNT---IRLWDMNGQPIGQPFRGHEDMVYSVAFSPDGG 1205 Query: 403 SLIFSRKKDGDTGSKLYSID 422 ++ D +L+ ++ Sbjct: 1206 RIVSGSY---DKTIRLWDMN 1222 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 96/270 (35%), Gaps = 40/270 (14%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 GR++ D RLWDV + IG+ F +Y G Sbjct: 1289 GRIVSGSNDN---TIRLWDVNGQP--IGQPFRGHEG-----------RVYSVAFSPDGG- 1331 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +VSG N++ + D +G I + +++ FSP+ ++ ++D+ Sbjct: 1332 ---------RIVSGSNDNTIRLWDVNGQPIGQPFRGHENLVYSVAFSPDGGRIVSGSWDN 1382 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-N 292 + L D + +++ + FS +G R + S D + ++ V+ QS Sbjct: 1383 ----TIRLWDVNGQPIGRPFRGHENVVYSVAFSPDGGRIV-SGSWDNTIRLWDVNGQSIG 1437 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 R S ++SPD +IV SD + L + NG + + E Sbjct: 1438 QPFR--GHEDWVRSVAFSPDGGRIVSGSD---DKTLRLWDVNGQPIGQPFRGHEDLVRSV 1492 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 +SP G+ I + I + Sbjct: 1493 AFSPDGERIVSGSYDET---IRIWDAATGD 1519 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 37/229 (16%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 GR++ D RLWDV + IG+ F + +Y G Sbjct: 1331 GRIVSGSNDN---TIRLWDVNGQP--IGQPFRGHE-----------NLVYSVAFSPDGG- 1373 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +VSG N++ + D +G I + +++ FSP+ ++ ++D+ Sbjct: 1374 ---------RIVSGSWDNTIRLWDVNGQPIGRPFRGHENVVYSVAFSPDGGRIVSGSWDN 1424 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-N 292 + L D + + + FS +G R + S D+ + ++ V+ Q Sbjct: 1425 ----TIRLWDVNGQSIGQPFRGHEDWVRSVAFSPDGGRIV-SGSDDKTLRLWDVNGQPIG 1479 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 R + S ++SPD +IV S E + + + D R+ Sbjct: 1480 QPFR--GHEDLVRSVAFSPDGERIVSGSY---DETIRIWDAATGDCLRV 1523 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 75/256 (29%), Gaps = 16/256 (6%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + + G N+ L R+ E + + + ++ + Sbjct: 877 KTQAQVGYIGGNLVKLLIERNPYSLENC---DLSNTVIPDVNFANASFRWVNLMGTNLTN 933 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++ + FS +GK+ +I K + ++ L S ++S Sbjct: 934 SVFAPVLGVVYSVAFSPDGKKLVIGDSK-GTIQVWET-FSGRVLLFLQGHENGVKSVAFS 991 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD +IV S+ + + NG + + E +SP G I Sbjct: 992 PDGGRIVSGSN---DNTIRLWDVNGQPIGQPFRGHEGGVNSVAFSPDGGRIVSGSNDNT- 1047 Query: 371 FAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + +G + + +SP G ++ D +L+ ++ + Sbjct: 1048 --IRLWDVNGQPIGQPFRGHEGGVNSVAFSPDGGRIV---SGSNDNTIRLWDVNGQPIGQ 1102 Query: 429 TLINTPAYASDPQWVG 444 + + Sbjct: 1103 PFRGHEGGVNSVAFSP 1118 >gi|298249795|ref|ZP_06973599.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] gi|297547799|gb|EFH81666.1| peptidase S9 prolyl oligopeptidase active site domain protein [Ktedonobacter racemifer DSM 44963] Length = 703 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 38/259 (14%) Query: 217 PRFSPNQQKVAYATYD-----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P SP+ ++VAY + + R++L+DT+ GN +S A +S +GK Sbjct: 92 PAISPDGRQVAYTLWSFEGEQQKRSGRIWLVDTQGGEPVPFGGNNKSEWGA-SWSPDGKE 150 Query: 272 ALISVQKDEA---MDIYSVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREG--- 324 + D ++ L + R ++ + +SPD S I F + R G Sbjct: 151 LAF-MALDGEPELPQLFVRALDGKSKARRICSMSRGLEEPIWSPDGSHIGFLA-RTGQEP 208 Query: 325 -----------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---- 369 ++L+ + +G + ++Q+ + ++ WSP G +A +G Sbjct: 209 DKDPLVLAPASHQRLWAVHRHGDTPRPLTQE-NITVWEYAWSPDGKHVAIYYSTGPDDTD 267 Query: 370 --KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR---KKDGDTGSKLYSIDL 423 + IG++ G R L + WSP G L + G ++ I++ Sbjct: 268 WYRGQIGIVSIQGGAVRQLTKLARQASGLAWSPDGTRLAYISGEWSDPCRGGGDIFVINV 327 Query: 424 NGRNETLINTPAYASDPQW 442 G + TP P W Sbjct: 328 AGGEARNL-TPGIDCSPGW 345 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 91/266 (34%), Gaps = 29/266 (10%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRV 239 S + ++D G ++ + +SP+ +++A+ D E + ++ Sbjct: 107 SFEGEQQKRSGRIWLVDTQGGEP-VPFGGNNKSEWGASWSPDGKELAFMALDGEPELPQL 165 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD-------------IYS 286 ++ +RI + + P +S +G + + D +++ Sbjct: 166 FVRALDGKSKARRICSMSRGLEEPIWSPDGSHIGFLARTGQEPDKDPLVLAPASHQRLWA 225 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIV-FES----DREG-KEQLYVMQSNGSDQKR 340 V + LT ++SPD + + S D + + Q+ ++ G ++ Sbjct: 226 VHRHGDTPRPLTQENITVWEYAWSPDGKHVAIYYSTGPDDTDWYRGQIGIVSIQGGAVRQ 285 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLVEDSNLQ-- 393 +++ + WSP G +A+ I V+ G + R L + Sbjct: 286 LTKLARQA-SGLAWSPDGTRLAYISGEWSDPCRGGGDIFVINVAGGEARNLTPGIDCSPG 344 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLY 419 W P G L+++ + L Sbjct: 345 WCRWLPEGEQLLYAGWYGANAQLGLI 370 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI-----------LRVY 240 L V DG + S + L EP +SP+ + + ++ + Sbjct: 164 QLFVRALDGKSKARRICSMSRGLEEPIWSPDGSHIGFLARTGQEPDKDPLVLAPASHQRL 223 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL--ISVQKDEAMD----IYSVDLQSNAT 294 R P+ + + +S +GK S D+ I V +Q A Sbjct: 224 WAVHRHGDTPRPLTQENITVWEYAWSPDGKHVAIYYSTGPDDTDWYRGQIGIVSIQGGAV 283 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDR-----EGKEQLYVMQSNGSDQKRISQDKEASY 349 +LT ++SPD +++ + S G ++V+ G + + ++ + S Sbjct: 284 RQLTKLARQASGLAWSPDGTRLAYISGEWSDPCRGGGDIFVINVAGGEARNLTPGIDCSP 343 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-------APTWSPSGR 402 W P+G+ + + + G +G++ + LL ++ P S + Sbjct: 344 GWCRWLPEGEQLLYAGWYGANAQLGLINEQDGAITLLERENRECILDLSIGFPGVSADLK 403 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETL 430 L+ S + +++ D+ L Sbjct: 404 HLV-SVRSSSTQPYEVWLADIAQETAQL 430 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 27/210 (12%) Query: 262 APRFSSNGKRALISV------QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 P S +G++ ++ Q+ + I+ VD Q AS+SPD + Sbjct: 91 TPAISPDGRQVAYTLWSFEGEQQKRSGRIWLVDTQGGEPVPFGGNNKSEWGASWSPDGKE 150 Query: 316 IVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----- 368 + F + QL+V +G + R +P+WSP G I F +G Sbjct: 151 LAFMALDGEPELPQLFVRALDGKSKARRICSMSRGLEEPIWSPDGSHIGFLARTGQEPDK 210 Query: 369 --------EKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRS--LIFSRKKDGD--TG 415 + + + G R L E+ + WSP G+ + +S D Sbjct: 211 DPLVLAPASHQRLWAVHRHGDTPRPLTQENITVWEYAWSPDGKHVAIYYSTGPDDTDWYR 270 Query: 416 SKLYSIDLNGRNETLINTPAYASDP-QWVG 444 ++ + + G + A + W Sbjct: 271 GQIGIVSIQGGAVRQLTKLARQASGLAWSP 300 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 99/295 (33%), Gaps = 50/295 (16%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI--- 246 L + R G R LT + ++E +SP+ + VA D Y I Sbjct: 220 HQRLWAVHRHGDTPRPLTQ-ENITVWEYAWSPDGKHVAIYYSTGPDDTDWYRGQIGIVSI 278 Query: 247 -DRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-----EAMDIYSVDLQSNATERLTNT 300 A +++ +S +G R + DI+ +++ LT Sbjct: 279 QGGAVRQLTKLARQASGLAWSPDGTRLAYISGEWSDPCRGGGDIFVINVAGGEARNLT-- 336 Query: 301 LFINISA---SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK-----EASYFDP 352 I+ S + P+ Q+++ QL ++ + ++ + S P Sbjct: 337 PGIDCSPGWCRWLPEGEQLLYAGWYGANAQLGLINEQDGAITLLERENRECILDLSIGFP 396 Query: 353 VWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERL----------LVEDSNLQAPT----W 397 S + + S + + + + +L L E++ +P+ + Sbjct: 397 GVSADLKHLVSVRSSSTQPYEVWLADIAQETAQLAWRRLTHVNKLQEETLALSPSQEIRY 456 Query: 398 -SPSGRSLIFSRKK-----DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 S G LI + GD+ LY ++++G P++A W F+ Sbjct: 457 PSVDG-WLIDAIYTPPPHWSGDSLPPLY-VEVHG-------GPSWARQHSWSPFV 502 >gi|239826379|ref|YP_002949003.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. WCH70] gi|239806672|gb|ACS23737.1| peptidase S9 prolyl oligopeptidase active site domain protein [Geobacillus sp. WCH70] Length = 670 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 53/234 (22%) Query: 263 PRFSSNGKRALISV-----QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P+FS +G++ + +++ ++ + L + T + +SPD I Sbjct: 27 PQFSPDGEKVIFVQKTIDDEREYRSHLFLLTLADGKVNQWTFGKVKDAFPRWSPDGKTIA 86 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD-LIAFTK----------- 365 F S+R GK Q++++ ++G + ++++ K WSP G L+A T Sbjct: 87 FLSNRSGKTQIWLLPTDGGEARQLTALKNG-VRHLRWSPDGRFLVALTSLGKKETLEERE 145 Query: 366 -----------------------------FSGEKFAIGVMKKDGSQERLLVE-DSNLQAP 395 ++ + + + + + L + D + + Sbjct: 146 EQNKKEKEKRELTPLVVERLQYKSDAAGFRDDKQDVLIRINVETGEIQSLTDRDDEIGSF 205 Query: 396 TWSPSGRSLIFSRKKDGD----TGSKLYSIDLN-GRNETLINTPAYASDPQWVG 444 SP G+++ F + + ++ +D++ G+ + + + W Sbjct: 206 AISPDGKTVAFVANRSNEPDFTFTRDIFLLDIDSGKTTKVTDGNGLFTSLSWSP 259 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 113/356 (31%), Gaps = 79/356 (22%) Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 + + K + +I +D S GEK F + + S + +L Sbjct: 4 QDVKKKLRVITAEDLFRI--RFVNDPQFSPDGEKVIFVQKTIDDEREYRSHLFLLTL--- 58 Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 DG ++ PR+SP+ + +A+ + +++L+ T +++ Sbjct: 59 -ADGKVNQWTF--GKVKDAFPRWSPDGKTIAFLSNRSGKT-QIWLLPTD-GGEARQLTAL 113 Query: 257 RSMILAPRFSSNGKRA-----------------------------------------LIS 275 ++ + R+S +G+ Sbjct: 114 KNGVRHLRWSPDGRFLVALTSLGKKETLEEREEQNKKEKEKRELTPLVVERLQYKSDAAG 173 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------QLY 329 + D+ + +++++ + LT+ S + SPD + F ++R + ++ Sbjct: 174 FRDDKQDVLIRINVETGEIQSLTDRDDEIGSFAISPDGKTVAFVANRSNEPDFTFTRDIF 233 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQER 384 ++ + +++ D + WSP G +A + + ++R Sbjct: 234 LLDIDSGKTTKVT-DGNGLFTSLSWSPDGKTLAAIGHDLKYLGATLNRVWIFDLVSGEKR 292 Query: 385 LLVEDSNLQ------------APT----WSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 L D ++ AP+ W G + F + G ++D Sbjct: 293 ALTADWDVHVGDAMVGDMHSDAPSPGLIWDKEGNGVYFLASERGRVNLHHVALDGT 348 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 99/312 (31%), Gaps = 67/312 (21%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE------------- 234 K + ++ DG R LT ++ + R+SP+ + + T + Sbjct: 92 SGKTQIWLLPTDGGEARQLTALKNGVRHL-RWSPDGRFLVALTSLGKKETLEEREEQNKK 150 Query: 235 --------------------------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 D V + + + + I + S + Sbjct: 151 EKEKRELTPLVVERLQYKSDAAGFRDDKQDVLIRINVETGEIQSLTDRDDEIGSFAISPD 210 Query: 269 GKRALISVQKDEAMD------IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD- 321 GK + D I+ +D+ S T ++T+ + S S+SPD + Sbjct: 211 GKTVAFVANRSNEPDFTFTRDIFLLDIDSGKTTKVTDGNGLFTSLSWSPDGKTLAAIGHD 270 Query: 322 ----REGKEQLYVMQSNGSDQKRISQDKE--------ASYFDPVWSP------QGDLIAF 363 ++++ +++ ++ D + SP +G+ + F Sbjct: 271 LKYLGATLNRVWIFDLVSGEKRALTADWDVHVGDAMVGDMHSDAPSPGLIWDKEGNGVYF 330 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + + DG+ +V D +L T P + + + + LY++ L Sbjct: 331 LASERGRVNLHHVALDGTITPSVVGDFHLYGLTIHP-HQHIAIAAISEPTHIGDLYTVSL 389 Query: 424 -NGRNETLINTP 434 +G+ L N Sbjct: 390 HDGKRNKLTNAN 401 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 9/102 (8%) Query: 350 FDPVWSPQGDLIAFTK------FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 DP +SP G+ + F + + DG + P WSP G++ Sbjct: 25 NDPQFSPDGEKVIFVQKTIDDEREYRSHLFLLTLADGKVNQWTFGKVKDAFPRWSPDGKT 84 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 + F + G T +++ + +G L +W Sbjct: 85 IAFLSNRSGKT--QIWLLPTDGGEARQLTALKNGVRHLRWSP 124 >gi|116625893|ref|YP_828049.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229055|gb|ABJ87764.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 898 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 116/312 (37%), Gaps = 21/312 (6%) Query: 140 IGKKFFSSPASWRKIAHT-ISDDIYQSITGEKGDF------NSRILFVSESVVS-GIIKN 191 +G F+ P R++ T + I + + G + + FV V + G ++N Sbjct: 536 VGGVLFAVPFDPRRLEKTGSAVGIVEGVLRGNGVGQYAFSNSGTLAFVPGPVFTLGAVEN 595 Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L ++DR G PR S + +++ Y DD +++++ AP+ Sbjct: 596 VLALVDRRGEVEPLKVVPAGFA--FPRASSDGKRIVY-QIDDGKEAGIWILELGGGTAPR 652 Query: 252 RIG-NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA-TERLTN-TLFINISA- 307 R+ P +SS+G++ ++ + I+ ++ ERLT + Sbjct: 653 RLTLPGNGGNRFPIWSSDGQQVAFQSDREADLGIWWQRADGSSAAERLTKPGPGVTHVPD 712 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 S+SPD F ++ +++ + V+SP G +A+ + Sbjct: 713 SWSPDGQTFSFTEQKDKSAEIWTYSMRERKAAVFAAVPGGILGRSVFSPDGKWVAYQVDA 772 Query: 368 GEKFAIGVMK-KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + V + + D + P WSP G+ LI+ S++ S+ ++ Sbjct: 773 QPNSRVYVRPFPPTATAYVAPADGDTHHPVWSPDGKELIYVA-----GPSQVGSMSISTH 827 Query: 427 NETLINTPAYAS 438 +P A Sbjct: 828 PSVSFGSPVRAP 839 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 108/321 (33%), Gaps = 71/321 (22%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------------------TYDDE 234 L V G + + P ++++ EP+ P + + Y+ + + Sbjct: 451 LRVSANGGKPEQLIVPKNNEMMLEPQTLPGGETILYSLVESTRRGTPSWDKGLVIAQNLK 510 Query: 235 DILRVYLMDTRIDRA---------------------PKRIGNFRSMILAP---------- 263 R L+ +D P+R+ S + Sbjct: 511 SGARKTLVQDGLDARYVPTGHLAYTVGGVLFAVPFDPRRLEKTGSAVGIVEGVLRGNGVG 570 Query: 264 --RFSSNGKRA-----LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 FS++G A + ++ E + + VD + E L S D +I Sbjct: 571 QYAFSNSGTLAFVPGPVFTLGAVENV-LALVDRRG-EVEPLKVVPAGFAFPRASSDGKRI 628 Query: 317 VFESDREGKEQLYVMQSNGS-DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 V++ D + +++++ G +R++ P+WS G +AF I Sbjct: 629 VYQIDDGKEAGIWILELGGGTAPRRLTLPGNGGNRFPIWSSDGQQVAFQSDREADLGIWW 688 Query: 376 MKKDGSQ--ERLLVEDSNLQAP--TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + DGS ERL + +WSP G++ F+ +KD YS+ + Sbjct: 689 QRADGSSAAERLTKPGPGVTHVPDSWSPDGQTFSFTEQKDKSAEIWTYSMR-ERKAAVFA 747 Query: 432 NTPA-------YASDPQWVGF 445 P ++ D +WV + Sbjct: 748 AVPGGILGRSVFSPDGKWVAY 768 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 31/231 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++ Y + + R + D P G + I +P FS +GK Q Sbjct: 353 SPDGTQMVYVA--NGRLYRRSMADLEARPIPGAYG-GGTAIRSPVFSPDGKSVAYHDQMS 409 Query: 280 EAMDIYSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 ++ ++D A LT L + S+ IVF + EG + + +NG Sbjct: 410 NSLKRIALD--GGAP--LTICPLQTQLGMSWGEQG--IVFATLAEG---ILRVSANGGKP 460 Query: 339 KRISQDKEASYF-DPVWSPQGDLIAF-----TKFSGEKFAIGV---MKKDGSQERLLVED 389 +++ K +P P G+ I + T+ + G+ + LV+D Sbjct: 461 EQLIVPKNNEMMLEPQTLPGGETILYSLVESTRRGTPSWDKGLVIAQNLKSGARKTLVQD 520 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 P+G L ++ G L+++ + R + + Sbjct: 521 GLDARYV--PTG-HLAYT------VGGVLFAVPFDPRRLEKTGSAVGIVEG 562 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 26/188 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQIVFES 320 S +G + + +Y + + S +SPD + + Sbjct: 351 TLSPDGTQMVYVA----NGRLYRRSMADLEARPIPGAYGGGTAIRSPVFSPDGKSVAYHD 406 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 L + +G ++ + W QG I F + I + +G Sbjct: 407 QMS--NSLKRIALDGGAP--LTICPLQTQLGMSWGEQG--IVFATLAEG---ILRVSANG 457 Query: 381 SQERLLVEDSNLQ---APTWSPSGRSLIFS---RKKDG----DTGSKLYSIDLNGRNETL 430 + L+ N + P P G ++++S + G D G + +G +TL Sbjct: 458 GKPEQLIVPKNNEMMLEPQTLPGGETILYSLVESTRRGTPSWDKGLVIAQNLKSGARKTL 517 Query: 431 INTPAYAS 438 + A Sbjct: 518 VQDGLDAR 525 Score = 44.2 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 81/299 (27%), Gaps = 79/299 (26%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD---TRIDRAPKRIGNFRSMILAPRF 265 + P FSP+ + VAY + R+ L I ++G Sbjct: 385 GGGTAIRSPVFSPDGKSVAYHDQMSNSLKRIALDGGAPLTICPLQTQLGMSWGEQG---- 440 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI--SASYSPDSSQIVFE---S 320 + + + I V E+L + P I++ S Sbjct: 441 ------IVFATLAEG---ILRVSANGGKPEQLIVPKNNEMMLEPQTLPGGETILYSLVES 491 Query: 321 DREGKEQ-----LYVMQSNGSDQKRISQDKEASYFDPV---------------WSP---- 356 R G + +K + QD + + P + P Sbjct: 492 TRRGTPSWDKGLVIAQNLKSGARKTLVQDGLDARYVPTGHLAYTVGGVLFAVPFDPRRLE 551 Query: 357 -------------QGDLI---AFTKFSGEKF-------------AIGVMKKDGSQERLLV 387 +G+ + AF+ F + ++ + G E L V Sbjct: 552 KTGSAVGIVEGVLRGNGVGQYAFSNSGTLAFVPGPVFTLGAVENVLALVDRRGEVEPLKV 611 Query: 388 EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA--SDPQWV 443 + P S G+ +++ + G ++ ++L G + P P W Sbjct: 612 VPAGFAFPRASSDGKRIVYQIDDGKEAG--IWILELGGGTAPRRLTLPGNGGNRFPIWS 668 >gi|114799589|ref|YP_759593.1| S9A/B/C family peptidase [Hyphomonas neptunium ATCC 15444] gi|114739763|gb|ABI77888.1| peptidase, S9A/B/C family [Hyphomonas neptunium ATCC 15444] Length = 696 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 64/348 (18%), Positives = 114/348 (32%), Gaps = 74/348 (21%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSES--VVSGIIKNSLCVMDRDGANIRYLTPS 209 R A + D Y S D + I +V S ++ L +D N R L Sbjct: 33 RFTAERVFDMEYASDPQVSPDGKT-IAYVRRSMDRMTDRDVGQLWSIDTGTGNHRPLVAG 91 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDI-LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + PR+SP+ ++ Y + LRV+ DT A + S P +S + Sbjct: 92 AEGAA-NPRWSPDGSRLIYMSAAGGKPELRVFYPDTGRSHALAQFLQAPSQ---PVWSPD 147 Query: 269 GKRALISVQ----------------------------------------KDEAMDIYSVD 288 GK S+ KD I+ + Sbjct: 148 GKYIAFSMFVPSDAPSFAKAPATPEGGKWSDPVKVFDRLTFRFDGAGYLKDGTSQIFVLP 207 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-----------EQLYVMQSNGSD 337 + ++T ++ +++ +V G +++ + Sbjct: 208 VDGGTPRQVTFGEADLSGPAWLGNATLLV-----SGNLAEDADMDPLESEIHAVSLADLS 262 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-----KFAIGVMKKDGSQERLLVED--S 390 + ++ ++ + V SP G IA+ F + + + +M DGS R + D Sbjct: 263 IRPLTS-RDGPDYGAVVSPDGKTIAYRGFDDKVLSYQQDNLYLMNADGSGAREIAADFPG 321 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 N+ W+P GRSL+ + G LY I G ++ AS Sbjct: 322 NVGQTLWAPDGRSLLVLSEDHG--VLSLYRITTGGAATKVLTGIGGAS 367 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 114/316 (36%), Gaps = 64/316 (20%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SR++++S + K L V D L Q +P +SP+ + +A++ + Sbjct: 105 SRLIYMSAAGG----KPELRVFYPDTGRSHALAQFL-QAPSQPVWSPDGKYIAFSMFVPS 159 Query: 235 DILRV------------------------------YLMDTRI--------DRAPKRIGNF 256 D YL D P+++ Sbjct: 160 DAPSFAKAPATPEGGKWSDPVKVFDRLTFRFDGAGYLKDGTSQIFVLPVDGGTPRQVTFG 219 Query: 257 RSMILAPRFSSNGKRAL---ISVQKDEAM---DIYSVDLQSNATERLTNTLFINISASYS 310 + + P + N + ++ D +I++V L + LT+ + A S Sbjct: 220 EADLSGPAWLGNATLLVSGNLAEDADMDPLESEIHAVSLADLSIRPLTSRDGPDYGAVVS 279 Query: 311 PDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 PD I + + ++ LY+M ++GS + I+ D + +W+P G + Sbjct: 280 PDGKTIAYRGFDDKVLSYQQDNLYLMNADGSGAREIAADFPGNVGQTLWAPDGRSLLVLS 339 Query: 366 FSGEKFAIGVMKKDGSQERLLV--EDSNLQAP----TWSPSGRS---LIFSRKKDGDTGS 416 ++ + G+ ++L +++ P ++S SG + ++ D D S Sbjct: 340 EDHGVLSLYRITTGGAATKVLTGIGGASIGRPYAEGSFSVSGGRNPLVAYTAGFD-DRPS 398 Query: 417 KLYSIDLNGRNETLIN 432 ++ S ++G+ ++ Sbjct: 399 EVASAAIDGKGMKVLT 414 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 53/206 (25%) Query: 290 QSNATERLTNTLFINIS----ASYSPDSSQIVFES-------DREGKEQLYVMQSNGSDQ 338 + ++R T ++ SPD I + DR+ QL+ + + + Sbjct: 27 DTTPSKRFTAERVFDMEYASDPQVSPDGKTIAYVRRSMDRMTDRD-VGQLWSIDTGTGNH 85 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTW 397 + + E + +P WSP G + + +G K + V D + L + + P W Sbjct: 86 RPLVAGAEGAA-NPRWSPDGSRLIYMSAAGGKPELRVFYPDTGRSHALAQFLQAPSQPVW 144 Query: 398 SPSGRSLIFS--------------------------------------RKKDGDTGSKLY 419 SP G+ + FS D S+++ Sbjct: 145 SPDGKYIAFSMFVPSDAPSFAKAPATPEGGKWSDPVKVFDRLTFRFDGAGYLKDGTSQIF 204 Query: 420 SIDLNGRNETLIN-TPAYASDPQWVG 444 + ++G + A S P W+G Sbjct: 205 VLPVDGGTPRQVTFGEADLSGPAWLG 230 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 20/160 (12%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVS---------GIIKNSLCVMDRDGANIRYLT 207 +++D + +T G ++ ++ +++L +M+ DG+ R + Sbjct: 257 SLADLSIRPLTSRDGPDYGAVVSPDGKTIAYRGFDDKVLSYQQDNLYLMNADGSGAREIA 316 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA----- 262 + + ++P+ + + + D +L +Y + T A K + + Sbjct: 317 ADFPGNVGQTLWAPDGRSLLVLSEDHG-VLSLYRITTG-GAATKVLTGIGGASIGRPYAE 374 Query: 263 PRFSSNGKR---ALISVQKDEAM-DIYSVDLQSNATERLT 298 FS +G R + D+ ++ S + + LT Sbjct: 375 GSFSVSGGRNPLVAYTAGFDDRPSEVASAAIDGKGMKVLT 414 >gi|58580571|ref|YP_199587.1| hypothetical protein XOO0948 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425165|gb|AAW74202.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 800 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 11/231 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + Sbjct: 237 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNAYPRVLETPAPGVS 296 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q D + + A R + +S S+SPD+ + Sbjct: 297 DRLPAWSPDGREIAFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARAL 356 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 +F S G ++ + + ++ +A FD P +SP G I F + Sbjct: 357 LFGSMTGSYGAARIRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFLRNPQLGDL 416 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G+ ERL + +++ +W P G +IF R+ D ++LY +DL Sbjct: 417 WRIPAEGGAAERLTHDTADIWGWSWLPDGSGVIFGRRV--DIEARLYRLDL 465 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 106/317 (33%), Gaps = 60/317 (18%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S+ V D A R L TP+ P +SP+ +++A++ + RV + Sbjct: 265 SLTGDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMI 324 Query: 242 MDTRIDRAPKRIGN-FRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLT 298 A + + R+ +L+ +S + + L A I ++L++ + L Sbjct: 325 AAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTL- 383 Query: 299 NTLF----INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 N + + YSPD IVF + + L+ + + G +R++ D + W Sbjct: 384 NYPAQAGDFDYAPRYSPDGHWIVFLRNPQ-LGDLWRIPAEGGAAERLTHDTADIWGW-SW 441 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKK------------------------------------ 378 P G + F + + + + Sbjct: 442 LPDGSGVIFGRRVDIEARLYRLDLLDSSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVYQ 501 Query: 379 ------DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---N 427 +G + RL P +P GR L+F+ + G G + G Sbjct: 502 VIRDTMNGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRLI 561 Query: 428 ETLINTPAYASDPQWVG 444 E L A+D W Sbjct: 562 EGLRPDSRQAAD--WSA 576 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 16/233 (6%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMD 283 ++ + + + R + I L P S +G S+ D Sbjct: 214 QIMWRRVPASGAAQASAVLGSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRTGT 273 Query: 284 IYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQK 339 V NA R+ T +S ++SPD +I F +G ++ + + G Sbjct: 274 SILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMIAAATGPAAA 333 Query: 340 R-ISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLLV----EDSNL 392 R + + A WSP + F +G I + + Q + L Sbjct: 334 REVVRCDRADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTLNYPAQAGDFD 393 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP-QWVG 444 AP +SP G ++F R L+ I G + W+ Sbjct: 394 YAPRYSPDGHWIVFLRN---PQLGDLWRIPAEGGAAERLTHDTADIWGWSWLP 443 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 77/257 (29%), Gaps = 54/257 (21%) Query: 213 ILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+SP+ + + D+ R+ A +R+ + + I + +G Sbjct: 392 FDYAPRYSPDGHWIVFLRNPQLGDLWRI----PAEGGAAERLTHDTADIWGWSWLPDGSG 447 Query: 272 ALISVQKDEAMDIYSVDL------------------------------------------ 289 + + D +Y +DL Sbjct: 448 VIFGRRVDIEARLYRLDLLDSSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVYQVIRDTM 507 Query: 290 -QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEA 347 RL ++ + +PD Q+VF S+R G L+ + R+ + + Sbjct: 508 NGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRLIEGLRPD 567 Query: 348 SYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS---PSGRS 403 S WS + + + A+ + + L E P + Sbjct: 568 SRQAADWSADSQRLLVSGSDAAGHAALFEVTPSSGKVVRLPEPQPRPLQAIHLPDPD-QV 626 Query: 404 LIFSRKKDGDTGSKLYS 420 L+ + DG T + LY Sbjct: 627 LVLAAADDGHTFATLYD 643 >gi|300774153|ref|ZP_07084021.1| Tricorn family protease [Sphingobacterium spiritivorum ATCC 33861] gi|300758964|gb|EFK55792.1| Tricorn family protease [Sphingobacterium spiritivorum ATCC 33861] Length = 1056 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 22/247 (8%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S+ P SP+ Q + ++ D D+ +V R+ +APR S Sbjct: 22 QSQASFFSYPTLSPDGQTIVFSY--DGDLWKV----AADGGLALRLTAMSGTEIAPRISP 75 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +GK S ++ MD+Y + L+ +LT + S+S DS I F S R + Sbjct: 76 DGKWLAFSSNQNGNMDVYIMPLEGGDIRQLTYHDAGDEVDSWSWDSKSIYFTSSRYNRFS 135 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-------FTKFSGE-----KFAIGV 375 Y + NG +R+ + + V +P G+L+ F I Sbjct: 136 SYKVAVNGGTAERMFPHYFNTIHNVVETPSGELLFNDSWESNFASNRKRYKGAFNPDILS 195 Query: 376 MKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 Q + + P+ G ++ F+ + + LYS ++G+ L P Sbjct: 196 YSPKQKQFKQYTDYAGKDFWPSVDQKG-AIYFASD-EANGEYNLYSF-VDGKKTGLTKFP 252 Query: 435 AYASDPQ 441 P Sbjct: 253 TSIKRPA 259 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 91/212 (42%), Gaps = 19/212 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +K+A+ + + +++ D + +++ I+ ++ + K L + Sbjct: 316 SPDGKKMAFVSRGE-----LFVSDIE-GKFVRQMPGQGERIVEVKWLKDNKTLLFNQTYQ 369 Query: 280 EAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 ++ +++ ++LT L N ++ D + V+ S G++++ ++ N Sbjct: 370 GYLNWFTIAADGKEQAKQLTKDLRNNRIIEFNKDRTLGVYLS---GRDEVRILDLNTLKS 426 Query: 339 KRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-AP 395 + +D+ ++ + P +SP G+ I FT + + I + + L + P Sbjct: 427 NTVVKDEIWAFQNSSPSFSPDGNYILFTAYRNFEQDIMLHNLKTNSTINLTNTGVSELTP 486 Query: 396 TWSPSGRSLIFSRKK------DGDTGSKLYSI 421 TWSP G+ + F+ + G + +Y + Sbjct: 487 TWSPDGKYIYFASNRTKPSYPTGVQNASIYRM 518 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 119/341 (34%), Gaps = 36/341 (10%) Query: 130 LWDVKDRKQIIGKKFFSSPASWR-KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 + + + + + S+ AS R + + DI +K F + + + Sbjct: 160 VVETPSGELLFNDSWESNFASNRKRYKGAFNPDILSYSPKQK-QFKQYTDYAGKDFWPSV 218 Query: 189 IKNSLCVMDRDGANIRYLTPSR-----------DQILFEPRFSPNQQKVAY---ATYDDE 234 + D AN Y S + P S N KV + Sbjct: 219 DQKGAIYFASDEANGEYNLYSFVDGKKTGLTKFPTSIKRPAVSANGSKVVFEKDYQLFLY 278 Query: 235 DILRVYLMDTRIDRAPKRIGN------FRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 D+ + +I + + N + +I S +GK+ + +++ D Sbjct: 279 DVATKKTIQPKIAISRNLVLNKQQEFDVKDIISNVDVSPDGKKMAFVSRG----ELFVSD 334 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KRISQDKEA 347 ++ ++ + + D+ ++F +G + + ++G +Q K++++D Sbjct: 335 IEGKFVRQMPGQGERIVEVKWLKDNKTLLFNQTYQGYLNWFTIAADGKEQAKQLTKDLRN 394 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED----SNLQAPTWSPSGRS 403 + ++ L + + + ++ + + +V+D +P++SP G Sbjct: 395 NRI-IEFNKDRTLGVYLS---GRDEVRILDLNTLKSNTVVKDEIWAFQNSSPSFSPDGNY 450 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++F+ ++ + L+++ N L NT P W Sbjct: 451 ILFTAYRNFEQDIMLHNLKTN-STINLTNTGVSELTPTWSP 490 >gi|296331793|ref|ZP_06874260.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675817|ref|YP_003867489.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151118|gb|EFG92000.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414061|gb|ADM39180.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 657 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 49/240 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + +P+++P+ + AY Y + + + PR+S +G Sbjct: 16 VTDPQYAPDGSRAAYVQSQVNQEKDSYTSNIWVYETKSGGSVPWTHGEKRCTDPRWSPDG 75 Query: 270 KRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI------------ 316 + +D A +Y + + +LT+ + +SPD + Sbjct: 76 RTLAFISDRDGDAAQLYIMSAEGGEARKLTDIPYGVSKPIWSPDGESVLVIVSLGEGESI 135 Query: 317 -------------------VFESD-----REGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 ++ D R QL ++ + K+++ + +A + DP Sbjct: 136 NDREKTEPDSFEPVEVQGLAYKRDGKGLTRGAYAQLVLVSVKSGEVKQLT-NHKADHGDP 194 Query: 353 VWSPQGDLIAF------TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLI 405 +SP G + F T + + + + +M + + + P ++S GR L Sbjct: 195 AFSPDGKWLVFSANLTETNDASKPYDVCMMSLESGDLKQITSHRGSFGPSSFSTDGRYLA 254 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 49/231 (21%) Query: 259 MILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+++ +G RA + +I+ + +S + T+ +SPD Sbjct: 15 SVTDPQYAPDGSRAAYVQSQVNQEKDSYTSNIWVYETKSGGSVPWTHGEKRCTDPRWSPD 74 Query: 313 SSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SDR+G QLY+M + G + ++++ D P+WSP G+ + GE Sbjct: 75 GRTLAFISDRDGDAAQLYIMSAEGGEARKLT-DIPYGVSKPIWSPDGESVLVIVSLGEGE 133 Query: 372 AIG------------------------------------VMKKDGSQERLLV-EDSNLQA 394 +I ++ + + L ++ Sbjct: 134 SINDREKTEPDSFEPVEVQGLAYKRDGKGLTRGAYAQLVLVSVKSGEVKQLTNHKADHGD 193 Query: 395 PTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 P +SP G+ L+FS D + + L + I + + P Sbjct: 194 PAFSPDGKWLVFSANLTETNDASKPYDVCMMSLESGDLKQITSHRGSFGPS 244 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 104/317 (32%), Gaps = 72/317 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRD---GANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 SR +V V + + + G ++ + ++ +PR+SP+ + +A+ + Sbjct: 26 SRAAYVQSQVNQEKDSYTSNIWVYETKSGGSVPWT--HGEKRCTDPRWSPDGRTLAFISD 83 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------- 277 D D ++Y+M +++ + + P +S +G+ L+ V Sbjct: 84 RDGDAAQLYIMSAE-GGEARKLTDIPYGVSKPIWSPDGESVLVIVSLGEGESINDREKTE 142 Query: 278 ----------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + V ++S ++LTN + ++SPD Sbjct: 143 PDSFEPVEVQGLAYKRDGKGLTRGAYAQLVLVSVKSGEVKQLTNHKADHGDPAFSPDGKW 202 Query: 316 IVF------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----K 365 +VF +D + +M D K+I+ S+ +S G +A + Sbjct: 203 LVFSANLTETNDASKPYDVCMMSLESGDLKQITS-HRGSFGPSSFSTDGRYLALLGHEKE 261 Query: 366 FSGEKFA-IGVMKKDGSQERLLVE----------------DSNLQAPTWSPSGRSLIFSR 408 + F + + L E Q P W+ + Sbjct: 262 YKNATFEKAWLYDIEQDYLTCLTEMLDVHLADALIGDSLIGGAEQRPVWTKDSQGFYVIG 321 Query: 409 KKDGDTGSKLYSIDLNG 425 G TG +Y I + G Sbjct: 322 TDQGSTG--IYYISIEG 336 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 9/105 (8%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 S DP ++P G A+ + + I V + P WSP Sbjct: 15 SVTDPQYAPDGSRAAYVQSQVNQEKDSYTSNIWVYETKSGGSVPWTHGEKRCTDPRWSPD 74 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 GR+L F +DGD ++LY + G L + P S P W Sbjct: 75 GRTLAFISDRDGD-AAQLYIMSAEGGEARKLTDIPYGVSKPIWSP 118 >gi|262194656|ref|YP_003265865.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078003|gb|ACY13972.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1607 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 109/269 (40%), Gaps = 27/269 (10%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 IY + G +RI VS ++ V + DG + D ++ RFSP Sbjct: 1147 IYAASFSPDG---TRIASVSA-------DKTVRVWNTDGTGTPLVLRGHDDEIYAVRFSP 1196 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + ++A A++D + + + + + + + FS +G IS +D Sbjct: 1197 DGTRIASASWDK----TIRIWNADGTGEARVLRGHAAALYGVDFSPDGSFL-ISASEDTT 1251 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 + ++ ++ +S A L + S D S++ S +G +++ ++G+D + Sbjct: 1252 LRLWPLN-RSGAPLILRGHDANILKVRLSADGSRVASASS-DGTVRIW--NTDGTDSPVV 1307 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSP 399 + + D +SP G I F I + DG+ +++ + + A ++SP Sbjct: 1308 LRGHQGPVTDAAFSPDGTRIVSASFDKT---IRIWSADGTGPPVILHGHDDRVLAASFSP 1364 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 G ++ + D +L++ D G + Sbjct: 1365 DGTRIVSASW---DATVRLWNADGTGSPQ 1390 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 103/264 (39%), Gaps = 13/264 (4%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ V S ++ + + DG + + + + FSP+ ++ A++D Sbjct: 1277 RLSADGSRVASASSDGTVRIWNTDGTDSPVVLRGHQGPVTDAAFSPDGTRIVSASFDK-- 1334 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 + + P + +LA FS +G R + S D + +++ D + Sbjct: 1335 --TIRIWSADGTGPPVILHGHDDRVLAASFSPDGTRIV-SASWDATVRLWNADGTGSPQI 1391 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 + I +A +SPD ++IV S + + ++G+ R+ + S + +S Sbjct: 1392 FRGHENAI-WAARFSPDGTRIVSAS---WDATVRLWNADGTGSARVLGSHDDSCWSASFS 1447 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 P G + T + V + D + L + + +SP GR ++ S KDG Sbjct: 1448 PDGQRVVSTSYDRTVRVWHVGEVD-APLVLRGHEDWVSGAAFSPDGRRIV-SSSKDGT-- 1503 Query: 416 SKLYSIDLNGRNETLINTPAYASD 439 +++ D + L + +D Sbjct: 1504 IRIWQADGSSPPVILRGHEQWVTD 1527 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 89/230 (38%), Gaps = 16/230 (6%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +VS ++ + DG + D + FSP+ ++ A++D V L Sbjct: 1326 RIVSASFDKTIRIWSADGTGPPVILHGHDDRVLAASFSPDGTRIVSASWD----ATVRLW 1381 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + +P+ + I A RFS +G R + S D + +++ D + + L + Sbjct: 1382 NADGTGSPQIFRGHENAIWAARFSPDGTRIV-SASWDATVRLWNAD-GTGSARVLGSHDD 1439 Query: 303 INISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 SAS+SPD ++V S DR + V D + + E +SP G I Sbjct: 1440 SCWSASFSPDGQRVVSTSYDRT----VRVWHVGEVDAPLVLRGHEDWVSGAAFSPDGRRI 1495 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRK 409 + G I + + DGS +++ + P G L+ + Sbjct: 1496 VSSSKDGT---IRIWQADGSSPPVILRGHEQWVTDVHFHPRGHQLVSASY 1542 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 99/272 (36%), Gaps = 17/272 (6%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 + E + R E + S ++ V + DG + + FSP+ + Sbjct: 973 LGHEAPVISVRFSPDGERIASSSADKTIRVWNTDGTGEPIVLRGHSDAVVSVAFSPDGTR 1032 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + ++ D + + + +P + ++ F+SNG + S D+ + ++ Sbjct: 1033 IVSSSRDR----TIRVWNADGTGSPVLLRGHSDLVHEVSFTSNGTYIV-SASWDKTIRVW 1087 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D + L + AS + DS++IV S G + + V + + + Sbjct: 1088 HSD-GTGQPLVLRGHEEMVYGASANGDSTRIVSSS---GDKTVRVWNMDSPSDPLVLRGH 1143 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRS 403 E + +SP G IA + V DG+ L++ + + A +SP G Sbjct: 1144 EGIIYAASFSPDGTRIASVSADKT---VRVWNTDGTGTPLVLRGHDDEIYAVRFSPDGTR 1200 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + D ++++ D G L A Sbjct: 1201 IASASW---DKTIRIWNADGTGEARVLRGHAA 1229 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 93/243 (38%), Gaps = 24/243 (9%) Query: 154 IAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 I H D + + G +VS ++ + + DG + + Sbjct: 1349 ILHGHDDRVLAASFSPDG----------TRIVSASWDATVRLWNADGTGSPQIFRGHENA 1398 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 ++ RFSP+ ++ A++D V L + + + +G+ + FS +G+R + Sbjct: 1399 IWAARFSPDGTRIVSASWDA----TVRLWNADGTGSARVLGSHDDSCWSASFSPDGQR-V 1453 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 +S D + ++ V + +A L A++SPD +IV S ++G + + Q+ Sbjct: 1454 VSTSYDRTVRVWHV-GEVDAPLVLRGHEDWVSGAAFSPDGRRIV-SSSKDGT--IRIWQA 1509 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 +GS I + E D + P+G + + + + D RL S Sbjct: 1510 DGSSPPVILRGHEQWVTDVHFHPRGHQLVSASYDATVRVWSDLAPVALD--DPRLWTRTS 1567 Query: 391 NLQ 393 Sbjct: 1568 YCM 1570 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 74/179 (41%), Gaps = 9/179 (5%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + + A + + +++ RFS +G+R S D+ + +++ D + L Sbjct: 963 LQTEIAREVFLGHEAPVISVRFSPDGERIA-SSSADKTIRVWNTD-GTGEPIVLRGHSDA 1020 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +S ++SPD ++IV S R+ + V ++G+ + + + ++ G I Sbjct: 1021 VVSVAFSPDGTRIV-SSSRD--RTIRVWNADGTGSPVLLRGHSDLVHEVSFTSNGTYIVS 1077 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + I V DG+ + L++ S +G S GD +++++D Sbjct: 1078 ASWDKT---IRVWHSDGTGQPLVLRGHEEMVYGASANGDSTRIVSS-SGDKTVRVWNMD 1132 >gi|77359984|ref|YP_339559.1| protease [Pseudoalteromonas haloplanktis TAC125] gi|76874895|emb|CAI86116.1| putative protease [Pseudoalteromonas haloplanktis TAC125] Length = 1080 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 14/220 (6%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + ++V + + + V TR + ++ +S NG+ + Sbjct: 327 SHDGKRVLFTARGELFSVPVKNGPTRNLSH-----TPKGREISATWSPNGRYIAYMSDET 381 Query: 280 EAMDIYSVD-LQSNATERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 +IY D +N ++LT+ I +SPD+ +++F + L+ + Sbjct: 382 GEYEIYLKDRANNNQVKQLTSNGSIWRFEPVWSPDNKKLLFS---DQNHTLWWLDIKTGK 438 Query: 338 QKRISQDKEA--SYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLLVED-SNLQ 393 Q++I K +WSP + I F K + ++A + + L +D S+ Sbjct: 439 QRKIDTAKYNEDGLTSYIWSPNSEDIVFVKNNENRYASLWHYNLKDKRVTRLTDDMSSET 498 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 P +SP G+ L F+ ++D + Y D N T + + Sbjct: 499 NPAFSPDGQQLYFTSERDFNLTFSSYEFDYMFNNATRLYS 538 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 30/189 (15%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 A DIY + ++ + RLT+ + +SPD SQI F + G Q+YVM +GSD K+ Sbjct: 48 AGDIYIANTKTGKSTRLTDHIGFETFPKFSPDGSQIAFSAQYNGSRQVYVMNRDGSDLKQ 107 Query: 341 ISQDKEASYFDPV---------WSPQGDLIAF----TKFSGEKFAIGVMKKDGSQERLLV 387 ++ + P W+P G I F T + ++ G E+ L Sbjct: 108 LTYYNDVGVMPPRGGFDYRVLDWTPDGKHIVFRANRTPYGQRVGRPYIVPAAGGLEQPLA 167 Query: 388 ---EDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSKLYSIDL-NGRNETLINTP 434 + SP G+ +++ ++ G ++ DL N +++ L Sbjct: 168 IPETGGGML----SPDGKQYVYTPIDREFRTWKRTRGGRAQDVWVYDLENNKSKQLTTNR 223 Query: 435 AYASDPQWV 443 A P WV Sbjct: 224 ATDQQPTWV 232 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 38/245 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 + + + + E + VY D I R+ + P+FS +G + S Q Sbjct: 29 DTRLLRFPDIHKESVTFVYAGDIYIANTKTGKSTRLTDHIGFETFPKFSPDGSQIAFSAQ 88 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISA----------SYSPDSSQIVFESDREGKEQ 327 + + +Y ++ + ++LT + + ++PD IVF ++R Q Sbjct: 89 YNGSRQVYVMNRDGSDLKQLTYYNDVGVMPPRGGFDYRVLDWTPDGKHIVFRANRTPYGQ 148 Query: 328 ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFA 372 Y++ + G ++ ++ + + SP G +T G Sbjct: 149 RVGRPYIVPAAGGLEQPLAIPETG---GGMLSPDGKQYVYTPIDREFRTWKRTRGGRAQD 205 Query: 373 IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + V + ++ + L + + Q PTW + + + + + LY +G+N + Sbjct: 206 VWVYDLENNKSKQLTTNRATDQQPTWVNNN--IYYVSDR--EYTLNLYK-HQDGKNPIKV 260 Query: 432 NTPAY 436 + Sbjct: 261 TNHSD 265 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 105/289 (36%), Gaps = 33/289 (11%) Query: 89 QKITNPDSIPRFQD----WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKF 144 Q NP + D W S G +V F D + + + Sbjct: 252 QDGKNPIKVTNHSDFDVLWPSAGPNAIVY------ENGGYLYRFD--DATQQSEKLSINV 303 Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 + + +SD I G R+LF + + L + R Sbjct: 304 QGNREHTMAYSKNVSDFIDSMDVSHDG---KRVLFTA--------RGELFSVPVKNGPTR 352 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-LAP 263 L+ + +SPN + +AY + D+ +YL D + K++ + S+ P Sbjct: 353 NLSHTPKGREISATWSPNGRYIAYMS-DETGEYEIYLKDRANNNQVKQLTSNGSIWRFEP 411 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS---YSPDSSQIVFES 320 +S + K+ L S D+ ++ +D+++ ++ + + +SP+S IVF Sbjct: 412 VWSPDNKKLLFS---DQNHTLWWLDIKTGKQRKIDTAKYNEDGLTSYIWSPNSEDIVFVK 468 Query: 321 DREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + E + L+ R++ D +S +P +SP G + FT Sbjct: 469 NNENRYASLWHYNLKDKRVTRLT-DDMSSETNPAFSPDGQQLYFTSERD 516 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 118/371 (31%), Gaps = 101/371 (27%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 ++D I + S+I F ++ S + VM+RDG++++ LT D + Sbjct: 63 RLTDHIGFETFPKFSPDGSQIAFSAQYNGS----RQVYVMNRDGSDLKQLTYYNDVGVMP 118 Query: 217 PR---------FSPNQQKVAYATYDDE-----DILRVYLMDTRIDRAPKRIGNFRSMILA 262 PR ++P+ + + + + +++ M Sbjct: 119 PRGGFDYRVLDWTPDGKHIVFRANRTPYGQRVGRPYIVPAAGGLEQPLAIPETGGGM--- 175 Query: 263 PRFSSNGKRALIS-----------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S +GK+ + + + A D++ DL++N +++LT + ++ Sbjct: 176 --LSPDGKQYVYTPIDREFRTWKRTRGGRAQDVWVYDLENNKSKQLTTNRATDQQPTWV- 232 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP--------------- 356 ++ I + SDRE LY +G + +++ + P P Sbjct: 233 -NNNIYYVSDREYTLNLYK-HQDGKNPIKVTNHSDFDVLWPSAGPNAIVYENGGYLYRFD 290 Query: 357 --------------------------------------QGDLIAFTKFSGEKFAIGVMKK 378 G + FT + + Sbjct: 291 DATQQSEKLSINVQGNREHTMAYSKNVSDFIDSMDVSHDGKRVLFTARG----ELFSVPV 346 Query: 379 DGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPA 435 R L + TWSP+GR + + + G+ ++Y D N+ + + Sbjct: 347 KNGPTRNLSHTPKGREISATWSPNGRYIAYMSDETGE--YEIYLKDRANNNQVKQLTSNG 404 Query: 436 --YASDPQWVG 444 + +P W Sbjct: 405 SIWRFEPVWSP 415 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 53/255 (20%) Query: 197 DRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF 256 +DG N +T D + P PN + Y E+ +Y D ++ K N Sbjct: 251 HQDGKNPIKVTNHSDFDVLWPSAGPNA--IVY-----ENGGYLYRFDDATQQSEKLSINV 303 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 + + ++ K+ + I S+D+ S D ++ Sbjct: 304 QGN----------REHTMAYSKNVSDFIDSMDV--------------------SHDGKRV 333 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 +F + + +L+ + + +S + WSP G IA+ ++ I + Sbjct: 334 LFTA----RGELFSVPVKNGPTRNLSHTPKGREISATWSPNGRYIAYMSDETGEYEIYLK 389 Query: 377 K-KDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + +Q + L + ++ P WSP + L+FS D L+ +D+ + I+T Sbjct: 390 DRANNNQVKQLTSNGSIWRFEPVWSPDNKKLLFS-----DQNHTLWWLDIKTGKQRKIDT 444 Query: 434 PAYASDP----QWVG 444 Y D W Sbjct: 445 AKYNEDGLTSYIWSP 459 >gi|268315717|ref|YP_003289436.1| WD40 domain-containing protein beta Propeller [Rhodothermus marinus DSM 4252] gi|262333251|gb|ACY47048.1| WD40 domain protein beta Propeller [Rhodothermus marinus DSM 4252] Length = 970 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 218 RFSPNQQKVAYATYDDEDILRVY--LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +SP+ + +A+A + V L D + + AP F+ +G+R Sbjct: 347 AWSPDGRWLAFARRERGPKGGVVYDLWLASADGRTHQQLTRGARAFAPTFAPDGRRLAFV 406 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQIVFESDREGKEQLYVMQ 332 D A + +DL++ A R T ++ + + PD +VF+ EG+ + V+ Sbjct: 407 SVADGAAHLQVLDLEAGAV-RWTKAFPASVRIGTVRWRPDGRALVFDRFVEGRRRDLVLW 465 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE---- 388 +D + D PVWSP+G +AFT + V+ + + Sbjct: 466 YPETDSLVVLTDGRHDDRGPVWSPEGRHLAFTSLRDGVPNVFVLDTASGKVARVTRLVTG 525 Query: 389 ----DSNLQAPTWSPSGR-SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 D +P + P GR +++ + K G+ ++ L + P +P Sbjct: 526 ARVLDWLPPSPGF-PEGRLAVVVTLSKYGE------AVRLVDARRRAVERPVEVPEPYRA 578 Query: 442 WVGFM 446 W+ ++ Sbjct: 579 WMAYV 583 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 89/270 (32%), Gaps = 15/270 (5%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + P WR + + DI + D E G + L + DG Sbjct: 327 YVGRPGHWRAV---VEGDIRPPV-AWSPDGRWLAFARRERGPKGGVVYDLWLASADGRTH 382 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + LT F P F+P+ +++A+ + D L + I Sbjct: 383 QQLTRG--ARAFAPTFAPDGRRLAFVSVADGAAHLQVLDLEAGAVRWTKAFPASVRIGTV 440 Query: 264 RFSSNGKRALISVQKDEAMDIYSVD-LQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 R+ +G+ + + + ++++ LT+ + +SP+ + F S R Sbjct: 441 RWRPDGRALVFDRFVEGRRRDLVLWYPETDSLVVLTDGRHDDRGPVWSPEGRHLAFTSLR 500 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEA----SYFDPVWS-PQGDLIAFTKFSGEKFAIGVMK 377 +G ++V+ + R+++ + P P+G L S A+ ++ Sbjct: 501 DGVPNVFVLDTASGKVARVTRLVTGARVLDWLPPSPGFPEGRLAVVVTLSKYGEAVRLVD 560 Query: 378 KDGSQERLLV---EDSNLQAPTWSPSGRSL 404 V E +PS R L Sbjct: 561 ARRRAVERPVEVPEPYRAWMAYVAPSRRML 590 >gi|262198463|ref|YP_003269672.1| peptidase S41 [Haliangium ochraceum DSM 14365] gi|262081810|gb|ACY17779.1| peptidase S41 [Haliangium ochraceum DSM 14365] Length = 1167 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 85/238 (35%), Gaps = 13/238 (5%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 L++ ++ K S+ V D DG + + S Q + SP+ ++ + D Sbjct: 339 LYLFDAGTREERKLSIYVPD-DGLSRQSEWVSAGQHIESFSLSPDGKRALFVGRGD---- 393 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT-ER 296 ++ + + + +G + +++ VD + + + Sbjct: 394 -LFTVPVEHGLVRNLSHTPNAHEREASWMPDGSHVVYVSDWSGEEELWVVDQRGQSPARQ 452 Query: 297 LTNTLFIN-ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 LT +SPD + + R +++V+ + G ++ + D WS Sbjct: 453 LTKGNGGRLYEPRFSPDGRHVAYSDHRG---RIFVIPAAGGQPLEVADEPFGRADDYRWS 509 Query: 356 PQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKD 411 P G +AF+ +I + + R + + +P W P G + F +++ Sbjct: 510 PDGQFLAFSLSDDTGLSSIYIWGMRDRRLRRITGPEFDEGSPVWHPGGEHIFFLSRRE 567 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 31/222 (13%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 R+ + L P+FS +G+ + Q +Y + + +LT Sbjct: 108 SGGTAARLTAHPGLELFPKFSPDGQWIAFTGQYGGDEQVYVISVGGGTPRQLTYYPARGP 167 Query: 306 SAS----------YSPDSSQIVFESDRE----GKEQLYVMQSNGSDQKRISQDKEASYFD 351 + ++PD +Q++F S R+ G +LY +G + + Sbjct: 168 LPARWGYDNQVYGWTPDGTQVLFRSLRDSYDVGSSRLYTAAVSGGMPSPLPMPEAG---A 224 Query: 352 PVWSPQGDLIAFT----------KFSGE-KFAIGVMKKDGSQERLLVEDSN-LQAPTWSP 399 SP G + ++ +++G + V D + + + +D + P W Sbjct: 225 GALSPDGKRVVYSPLFRDFRTWKRYAGGWAQDLYVFDIDNTSVQRITDDPRVDRDPMWI- 283 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 G S+ F+ ++ G + Y + + +T P Sbjct: 284 -GDSVYFASERTGVSNLFRYDFETGSAEQLTTHTDWDVRWPS 324 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 28/196 (14%) Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + + D ++ RLT + + +SPD I F G EQ+YV+ Sbjct: 94 VVFTYAGD----LWLARTSGGTAARLTAHPGLELFPKFSPDGQWIAFTGQYGGDEQVYVI 149 Query: 332 QSNGSDQKRISQDK---------EASYFDPVWSPQGDLIAFTKFSG----EKFAIGVMKK 378 G ++++ W+P G + F + Sbjct: 150 SVGGGTPRQLTYYPARGPLPARWGYDNQVYGWTPDGTQVLFRSLRDSYDVGSSRLYTAAV 209 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFS---------RKKDGDTGSKLYSIDLNGRN-E 428 G L A SP G+ +++S ++ G LY D++ + + Sbjct: 210 SGGMPSPLPMP-EAGAGALSPDGKRVVYSPLFRDFRTWKRYAGGWAQDLYVFDIDNTSVQ 268 Query: 429 TLINTPAYASDPQWVG 444 + + P DP W+G Sbjct: 269 RITDDPRVDRDPMWIG 284 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 103/340 (30%), Gaps = 85/340 (25%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA----- 229 +++LF S + + L G +P SP+ ++V Y+ Sbjct: 186 TQVLFRSLRDSYDVGSSRLYTAAVSGG---MPSPLPMPEAGAGALSPDGKRVVYSPLFRD 242 Query: 230 -----TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 Y +Y+ D + + +RI + + P + G + ++ ++ Sbjct: 243 FRTWKRYAGGWAQDLYVFDID-NTSVQRITDDPRVDRDPMW--IGDSVYFASERTGVSNL 299 Query: 285 YSVDLQSNATERLTNT-------LFINISASY---------------------------- 309 + D ++ + E+LT + S S Sbjct: 300 FRYDFETGSAEQLTTHTDWDVRWPSADASGSIVYELEGDLYLFDAGTREERKLSIYVPDD 359 Query: 310 --------------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 SPD + +F G+ L+ + + +S A Sbjct: 360 GLSRQSEWVSAGQHIESFSLSPDGKRALFV----GRGDLFTVPVEHGLVRNLSHTPNAHE 415 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-SQERLLV--EDSNLQAPTWSPSGRSLIF 406 + W P G + + + + V+ + G S R L L P +SP GR + + Sbjct: 416 REASWMPDGSHVVYVSDWSGEEELWVVDQRGQSPARQLTKGNGGRLYEPRFSPDGRHVAY 475 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTP--AYASDPQWVG 444 S + +++ I G + A D +W Sbjct: 476 SDHRG-----RIFVIPAAGGQPLEVADEPFGRADDYRWSP 510 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 101/287 (35%), Gaps = 26/287 (9%) Query: 93 NPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 + + + DW+ +G ++ E L + L+D R++ + Sbjct: 308 SAEQLTTHTDWDVRWPSADASGSIVYE----LEGDLYLFDAGTREE-RKLSIYVPDDGLS 362 Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 + + +S + D R LFV + L + + +R L+ + + Sbjct: 363 RQSEWVSAGQHIESFSLSPDGK-RALFV--------GRGDLFTVPVEHGLVRNLSHTPNA 413 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF-RSMILAPRFSSNGKR 271 E + P+ V Y + + ++++D R +++ + PRFS +G+ Sbjct: 414 HEREASWMPDGSHVVYVSDWSGEE-ELWVVDQRGQSPARQLTKGNGGRLYEPRFSPDGRH 472 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTN---TLFINISASYSPDSSQIVFE-SDREGKEQ 327 S D I+ + + + + +SPD + F SD G Sbjct: 473 VAYS---DHRGRIFVIPAAGGQPLEVADEPFGRADDY--RWSPDGQFLAFSLSDDTGLSS 527 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 +Y+ +RI+ E PVW P G+ I F + IG Sbjct: 528 IYIWGMRDRRLRRIT-GPEFDEGSPVWHPGGEHIFFLSRREFQPQIG 573 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 46/283 (16%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G LT + P+FSP+ Q +A+ D +VY++ P+ Sbjct: 101 DLWLARTSGGTAARLTA-HPGLELFPKFSPDGQWIAFTGQYGGDE-QVYVISVG-GGTPR 157 Query: 252 RIGNFRSMILAPR----------FSSNGKRALISVQKD----EAMDIYSVDLQSNATERL 297 ++ + + P ++ +G + L +D + +Y+ + L Sbjct: 158 QLTYYPARGPLPARWGYDNQVYGWTPDGTQVLFRSLRDSYDVGSSRLYTAAVSGGMPSPL 217 Query: 298 TNTLFINISASYSPDSSQIVF--------ESDR---EGKEQLYVMQSNGSDQKRISQDKE 346 + + SPD ++V+ R + LYV + + +RI+ D Sbjct: 218 PMPEA--GAGALSPDGKRVVYSPLFRDFRTWKRYAGGWAQDLYVFDIDNTSVQRITDDPR 275 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 DP+W GD + F + + L D +++ P+ SG S+ Sbjct: 276 V-DRDPMW--IGDSVYFASERTGVSNLFRYDFETGSAEQLTTHTDWDVRWPSADASG-SI 331 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETL----INTPAYASDPQWV 443 ++ + LY D R E + + +WV Sbjct: 332 VY------ELEGDLYLFDAGTREERKLSIYVPDDGLSRQSEWV 368 >gi|84622525|ref|YP_449897.1| hypothetical protein XOO_0868 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366465|dbj|BAE67623.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 783 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 11/231 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + Sbjct: 220 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNAYPRVLETPAPGVS 279 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q D + + A R + +S S+SPD+ + Sbjct: 280 DRLPAWSPDGREIAFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARAL 339 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 +F S G ++ + + ++ +A FD P +SP G I F + Sbjct: 340 LFGSMTGSYGAARIRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFLRNPQLGDL 399 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G+ ERL + +++ +W P G +IF R+ D ++LY +DL Sbjct: 400 WRIPAEGGAAERLTHDTADIWGWSWLPDGSGVIFGRRV--DIEARLYRLDL 448 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 106/317 (33%), Gaps = 60/317 (18%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S+ V D A R L TP+ P +SP+ +++A++ + RV + Sbjct: 248 SLTGDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMI 307 Query: 242 MDTRIDRAPKRIGN-FRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLT 298 A + + R+ +L+ +S + + L A I ++L++ + L Sbjct: 308 AAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTL- 366 Query: 299 NTLF----INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 N + + YSPD IVF + + L+ + + G +R++ D + W Sbjct: 367 NYPAQAGDFDYAPRYSPDGHWIVFLRNPQ-LGDLWRIPAEGGAAERLTHDTADIWGW-SW 424 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKK------------------------------------ 378 P G + F + + + + Sbjct: 425 LPDGSGVIFGRRVDIEARLYRLDLLDSSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVYQ 484 Query: 379 ------DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---N 427 +G + RL P +P GR L+F+ + G G + G Sbjct: 485 VIRDTMNGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRLI 544 Query: 428 ETLINTPAYASDPQWVG 444 E L A+D W Sbjct: 545 EGLRPDSRQAAD--WSA 559 Score = 90.1 bits (222), Expect = 8e-16, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 16/233 (6%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMD 283 ++ + + + R + I L P S +G S+ D Sbjct: 197 QIMWRRVPASGAAQASAVLGSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRTGT 256 Query: 284 IYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQK 339 V NA R+ T +S ++SPD +I F +G ++ + + G Sbjct: 257 SILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMIAAATGPAAA 316 Query: 340 R-ISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLLV----EDSNL 392 R + + A WSP + F +G I + + Q + L Sbjct: 317 REVVRCDRADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTLNYPAQAGDFD 376 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP-QWVG 444 AP +SP G ++F R L+ I G + W+ Sbjct: 377 YAPRYSPDGHWIVFLRN---PQLGDLWRIPAEGGAAERLTHDTADIWGWSWLP 426 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 76/256 (29%), Gaps = 52/256 (20%) Query: 213 ILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+SP+ + + D+ R+ A +R+ + + I + +G Sbjct: 375 FDYAPRYSPDGHWIVFLRNPQLGDLWRI----PAEGGAAERLTHDTADIWGWSWLPDGSG 430 Query: 272 ALISVQKDEAMDIYSVDL------------------------------------------ 289 + + D +Y +DL Sbjct: 431 VIFGRRVDIEARLYRLDLLDSSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVYQVIRDTM 490 Query: 290 -QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEA 347 RL ++ + +PD Q+VF S+R G L+ + R+ + + Sbjct: 491 NGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRLIEGLRPD 550 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSL 404 S WS + + A V G RL V P + L Sbjct: 551 SRQAADWSADSQRLLVSGSDAAGHAALFEVTPSSGKVVRLPVPQPRPLQAIHLPDPDQVL 610 Query: 405 IFSRKKDGDTGSKLYS 420 + + DG T + LY Sbjct: 611 VLAAADDGHTFATLYD 626 >gi|254881047|ref|ZP_05253757.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640054|ref|ZP_07994781.1| exported protease [Bacteroides sp. 3_1_40A] gi|254833840|gb|EET14149.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388332|gb|EFV69184.1| exported protease [Bacteroides sp. 3_1_40A] Length = 1074 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ D P W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMSEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQDIIPMWIG 226 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 119/326 (36%), Gaps = 49/326 (15%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + I + I+ DI GE+ F S ++ V + Sbjct: 202 YDPAAKKVENITNNIAQDIIPMWIGEEIYFIS----------DRDRTMNIFVYNIRTKQT 251 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-- 261 +T D + P S N Q + Y E +Y +D + ++ K S + Sbjct: 252 EKVTHYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISITLTSDNIYA 304 Query: 262 ------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISAS 308 A S +G R ++ + +++ V + T +T T Sbjct: 305 RKEMKRVADNLTAASLSPDGHRLAVTARG----EVFDVPAEKGVTRDITRTPGANEREGE 360 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 361 WSPNGKQIAYISDRTGETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKKILYTDRKN 420 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + +R ++++ +SP + + +++ + S +Y L Sbjct: 421 ---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVIYVYHLTSG 476 Query: 427 NETLIN-------TPAYASDPQWVGF 445 E + +P +++D +++ F Sbjct: 477 KEYPVTEKWYNSSSPVFSTDGKYLIF 502 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMSEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQDIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTHYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ +E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMSEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--D 389 + I+ + A P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENIT-NNIAQDIIPMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTHYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 106/319 (33%), Gaps = 39/319 (12%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++DV K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLAVTARGEVFDVPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSVEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRIS 342 Y L S +T + + S +S D ++F S+R+ + + Sbjct: 469 YVYHLTSGKEYPVTEKWYNSSSPVFSTDGKYLIFNSERDFNPIYSQTEWNHAYNRMGGVY 528 Query: 343 QDKEASYFDPVWSPQGDLI--------AFTKFSGEKFAIGVMKKDGSQERL--LVEDSNL 392 A+ P +++ A K + + +G RL L + Sbjct: 529 MAMLANDTPSPLLPSDEMVSIEQQATDAVNKKTEATNNAVKIDPEGLPGRLIKLPLQAGN 588 Query: 393 QAPTWSPSGRSLIFSRKKD 411 +S G+ + ++ + Sbjct: 589 YDNFYS-DGKKVWYASGRS 606 >gi|119503812|ref|ZP_01625894.1| hypothetical protein MGP2080_01776 [marine gamma proteobacterium HTCC2080] gi|119460320|gb|EAW41413.1| hypothetical protein MGP2080_01776 [marine gamma proteobacterium HTCC2080] Length = 665 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 123/320 (38%), Gaps = 55/320 (17%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D + G F + L+ + ++ S+ ++ G +T P++S Sbjct: 34 DASEISVSPDGQFVAYTLY-ERDLEQDLVTTSVWMIPTAGGPAVPMTAGNGN-SHTPKWS 91 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ + ++ + + ++V+L+D R + + + + + +S G + L+ V+ Sbjct: 92 PDNRFLSILSDRGDQQIQVWLLD-RRGGDAQPLTALKQGVSSYEWSPTGNQILLEVKDPT 150 Query: 281 AMD---------------------------------IYSVDLQSNATERLTNTLFINISA 307 D +Y +D+ + T +LT F + Sbjct: 151 PADLDEEPRPNPRPYVIDRLQFKEDYVGYLDRYRYHLYVIDVATQKTRQLTFGDFDDSQP 210 Query: 308 SYSPDSSQIVFES------DREGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGD 359 S+SPD I F S DR +L+++ + S+ ++++ + P WSP Sbjct: 211 SWSPDGKHIAFVSNRTEHPDRNRNTELWLLDTTAGPSEPRQLTFNSFQDA-SPTWSPDSK 269 Query: 360 LIAFTKFSGEKFAIG------VMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKD 411 +A+T + E I ++ + + +L+ S +Q P +S +G L+ + Sbjct: 270 HLAYTTAASEDLPIYAIPQLAILNIESGESQLVASLSEVQVFNPVFSANGNDLLTITEFQ 329 Query: 412 GDTGSKLYSIDLNGRNETLI 431 G +L +DL+ ++ Sbjct: 330 GQQ--QLVRVDLDTHEIEVV 347 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 52/272 (19%) Query: 218 RFSPNQQKVAYATYDD---EDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRA- 272 SP+ Q VAY Y+ +D++ + P P++S + + Sbjct: 39 SVSPDGQFVAYTLYERDLEQDLVTTSVWMIPTAGGPAVPMTAGNGNSHTPKWSPDNRFLS 98 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV--------------- 317 ++S + D+ + ++ +D + + LT S +SP +QI+ Sbjct: 99 ILSDRGDQQIQVWLLDRRGGDAQPLTALKQGVSSYEWSPTGNQILLEVKDPTPADLDEEP 158 Query: 318 ------FESDR------------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + DR + LYV+ ++++ + P WSP G Sbjct: 159 RPNPRPYVIDRLQFKEDYVGYLDRYRYHLYVIDVATQKTRQLTF-GDFDDSQPSWSPDGK 217 Query: 360 LIAFTKF------SGEKFAIGVMKKDGS--QERLLV-EDSNLQAPTWSPSGRSLIFSRKK 410 IAF + ++ + R L +PTWSP + L ++ Sbjct: 218 HIAFVSNRTEHPDRNRNTELWLLDTTAGPSEPRQLTFNSFQDASPTWSPDSKHLAYTTAA 277 Query: 411 DGD----TGSKLYSIDLNGRNETLINTPAYAS 438 D +L +++ L+ + + Sbjct: 278 SEDLPIYAIPQLAILNIESGESQLVASLSEVQ 309 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 105/299 (35%), Gaps = 51/299 (17%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA----------- 227 F+S G + + ++DR G + + LT + + +SP ++ Sbjct: 96 FLSILSDRGDQQIQVWLLDRRGGDAQPLTALKQGVSSY-EWSPTGNQILLEVKDPTPADL 154 Query: 228 ---------------------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 Y Y D +Y++D + +++ P +S Sbjct: 155 DEEPRPNPRPYVIDRLQFKEDYVGYLDRYRYHLYVIDVAT-QKTRQLTFGDFDDSQPSWS 213 Query: 267 SNGKRALISVQKDEAMD------IYSVDLQSN--ATERLTNTLFINISASYSPDSSQIVF 318 +GK + E D ++ +D + +LT F + S ++SPDS + + Sbjct: 214 PDGKHIAFVSNRTEHPDRNRNTELWLLDTTAGPSEPRQLTFNSFQDASPTWSPDSKHLAY 273 Query: 319 ESDREGK------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + QL ++ + + ++ E F+PV+S G+ + + Sbjct: 274 TTAASEDLPIYAIPQLAILNIESGESQLVASLSEVQVFNPVFSANGNDLLTITEFQGQQQ 333 Query: 373 IGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + + D + E +L + + +P G+ +++ ++++++ L Sbjct: 334 LVRVDLDTHEIEVVLGQQDVVSDFDEAPDGQ--LYALINRPQYPGEIFTVNKESSWVQL 390 Score = 83.5 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 111/286 (38%), Gaps = 27/286 (9%) Query: 125 RVEFRLWDVKDR--KQIIGKKFFSSPASWRKIAHTI---------SDDIYQSITGEKGDF 173 +++ L D + + + K S W + I +D + + Sbjct: 107 QIQVWLLDRRGGDAQPLTALKQGVSSYEWSPTGNQILLEVKDPTPADLDEEPRPNPRPYV 166 Query: 174 NSRILFVSESVVS-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 R+ F + V + L V+D R LT D +P +SP+ + +A+ + Sbjct: 167 IDRLQFKEDYVGYLDRYRYHLYVIDVATQKTRQLTFG-DFDDSQPSWSPDGKHIAFVSNR 225 Query: 233 DEDILR-----VYLMDTRID-RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY- 285 E R ++L+DT P+++ +P +S + K + E + IY Sbjct: 226 TEHPDRNRNTELWLLDTTAGPSEPRQLTFNSFQDASPTWSPDSKHLAYTTAASEDLPIYA 285 Query: 286 -----SVDLQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++++S ++ + + + + + +S + + ++ ++ +G++QL + + + + Sbjct: 286 IPQLAILNIESGESQLVASLSEVQVFNPVFSANGNDLLTITEFQGQQQLVRVDLDTHEIE 345 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + ++ D +P G L A I + K+ S +L Sbjct: 346 VVLGQQDV-VSDFDEAPDGQLYALINRPQYPGEIFTVNKESSWVQL 390 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 29/225 (12%) Query: 122 DRLRVEFRLWDVKDRK--QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 DR R + DV +K Q+ F S SW G I F Sbjct: 181 DRYRYHLYVIDVATQKTRQLTFGDFDDSQPSW----------------SPDG---KHIAF 221 Query: 180 VSESV--VSGIIKNSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED- 235 VS L ++D G + P +SP+ + +AY T ED Sbjct: 222 VSNRTEHPDRNRNTELWLLDTTAGPSEPRQLTFNSFQDASPTWSPDSKHLAYTTAASEDL 281 Query: 236 ----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 I ++ +++ + + P FS+NG L + + VDL + Sbjct: 282 PIYAIPQLAILNIESGESQLVASLSEVQVFNPVFSANGNDLLTITEFQGQQQLVRVDLDT 341 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + E + + +PD + + +++ + S Sbjct: 342 HEIEVVLGQQDVVSDFDEAPDGQLYALINRPQYPGEIFTVNKESS 386 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%) Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGE------KFAIGVMKKDGSQERLLVED-SNLQA 394 + + SP G +A+T + + ++ ++ G + N Sbjct: 28 TYLHMQDASEISVSPDGQFVAYTLYERDLEQDLVTTSVWMIPTAGGPAVPMTAGNGNSHT 87 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 P WSP R L + GD +++ +D G + + L S +W Sbjct: 88 PKWSPDNRFLSILSDR-GDQQIQVWLLDRRGGDAQPLTALKQGVSSYEWSP 137 >gi|294777459|ref|ZP_06742910.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides vulgatus PC510] gi|294448527|gb|EFG17076.1| dipeptidyl peptidase IV N-terminal domain protein [Bacteroides vulgatus PC510] Length = 1074 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NG + S D +Y L ++LT+ + + A +SPD I F +G + Sbjct: 32 NGSDIVFSYAGD----LYKAPLNGGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGNTE 87 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDP-----VWSPQGDLIAFTKFSGEKFA--IG 374 +Y++ ++G + +R++ D P W+P G I + + F + Sbjct: 88 VYLIPTDGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGKLW 147 Query: 375 VMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID- 422 + K+G + L E ++SP G+ L ++R G ++ D Sbjct: 148 SISKNGGMSEVIPLPEGGFC---SYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIYDP 204 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E + N A P W+G Sbjct: 205 AAKKVENITNNIAQDIIPMWIG 226 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 119/326 (36%), Gaps = 49/326 (15%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI 203 + + I + I+ DI GE+ F S ++ V + Sbjct: 202 YDPAAKKVENITNNIAQDIIPMWIGEEIYFIS----------DRDRTMNIFVYNIRTKQT 251 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-- 261 +T D + P S N Q + Y E +Y +D + ++ K S + Sbjct: 252 EKVTHYTDYDVKFP--SSNGQIIVY-----EHGGYLYKLDPKTRKSEKISITLTSDNIYA 304 Query: 262 ------------APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISAS 308 A S +G R ++ + +++ V + T +T T Sbjct: 305 RKEMKRVADNLTAASLSPDGHRLAVTARG----EVFDVPAEKGVTRDITRTPGANEREGE 360 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SP+ QI + SDR G+ ++++ G D +++Q+ + +WSP I +T Sbjct: 361 WSPNGKQIAYISDRTGETEIWLQSIEGGDPIQLTQNNDTYIRQLMWSPDSKKILYTDRKN 420 Query: 369 EKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 I + +R ++++ +SP + + +++ + S +Y L Sbjct: 421 ---RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKS-GANNMSVIYVYHLTSG 476 Query: 427 NETLIN-------TPAYASDPQWVGF 445 E + +P +++D +++ F Sbjct: 477 KEYPVTEKWYNSSSPVFSTDGKYLIF 502 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 37/246 (15%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 N + ++ D+ + L +++ + + RFS +GK + Q D Sbjct: 32 NGSDIVFSY--AGDLYKAPLN----GGEAQKLTSHIGYEMFARFSPDGKSIAFTGQYDGN 85 Query: 282 MDIYSVDLQSNATERLT-------NTLFINISA-----SYSPDSSQIVFESD-REG-KEQ 327 ++Y + +RLT + L + +++PD IV+ + +G + Sbjct: 86 TEVYLIPTDGGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDGK 145 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSGEKFAIGVM 376 L+ + NG + I + +SP G +A+ + G I + Sbjct: 146 LWSISKNGGMSEVIPLPEGGF---CSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + + + + P W G + F +D +Y+I + T Sbjct: 203 DPAAKKVENITNNIAQDIIPMWI--GEEIYFISDRDRTMNIFVYNIRTKQTEKVTHYTDY 260 Query: 436 YASDPQ 441 P Sbjct: 261 DVKFPS 266 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 45/283 (15%) Query: 179 FVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 F + + + L +G + LT S RFSP+ + +A+ D + Sbjct: 28 FPATNGSDIVFSYAGDLYKAPLNGGEAQKLT-SHIGYEMFARFSPDGKSIAFTGQYDGNT 86 Query: 237 LRVYLMDTRIDRAPKRIG-------NFRSMILAP-----RFSSNGKRALI--SVQKDEAM 282 VYL+ T P+R+ + + P ++ +GK + + Sbjct: 87 -EVYLIPTD-GGEPQRLTYTATNSRDDLGDRMGPNNIVMTWTPDGKNIVYRNRISDGFDG 144 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----------DREG-KEQLYVM 331 ++S+ +E + SYSPD ++ + R G + +++ Sbjct: 145 KLWSISKNGGMSEVIPLPEG--GFCSYSPDGKKLAYNRVMREFRNWKYYRGGMADDIWIY 202 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--D 389 + I+ + A P+W G+ I F I V Q + D Sbjct: 203 DPAAKKVENIT-NNIAQDIIPMW--IGEEIYFISDRDRTMNIFVYNIRTKQTEKVTHYTD 259 Query: 390 SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 +++ P S +G+ +++ + G LY +D R I+ Sbjct: 260 YDVKFP--SSNGQIIVY------EHGGYLYKLDPKTRKSEKIS 294 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 106/319 (33%), Gaps = 39/319 (12%) Query: 108 AQVLVTGRVIKEGKDRLRVEFR--LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQS 165 A L + +G RL V R ++DV K + + A+ R+ Sbjct: 312 ADNLTAASLSPDGH-RLAVTARGEVFDVPAEKGVTRDITRTPGANERE------------ 358 Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 GE +I ++S+ + + + +G + LT + D + + +SP+ +K Sbjct: 359 --GEWSPNGKQIAYISDRTG----ETEIWLQSIEGGDPIQLTQNNDTYIRQLMWSPDSKK 412 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 + Y + R+ +D + N +S + + + + I Sbjct: 413 ILYTDRKN----RIVEVDIASKAKRTVMQNPEGEFYEVNYSPDSQWITYTKSGANNMSVI 468 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRIS 342 Y L S +T + + S +S D ++F S+R+ + + Sbjct: 469 YVYHLTSGKEYPVTEKWYNSSSPVFSTDGKYLIFSSERDFNPIYSQTEWNHAYNRMGGVY 528 Query: 343 QDKEASYFDPVWSPQGDLI--------AFTKFSGEKFAIGVMKKDGSQERL--LVEDSNL 392 A+ P +++ A K + + +G RL L + Sbjct: 529 MAMLANDTPSPLLPSDEMVSIEQQATDAVNKKTEATNNAVKIDPEGLPGRLIKLPLQAGN 588 Query: 393 QAPTWSPSGRSLIFSRKKD 411 +S G+ + ++ + Sbjct: 589 YDNFYS-DGKKVWYASGRS 606 >gi|188578487|ref|YP_001915416.1| transcriptional regulatory protein, C terminal [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522939|gb|ACD60884.1| transcriptional regulatory protein, C terminal [Xanthomonas oryzae pv. oryzae PXO99A] Length = 772 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 11/231 (4%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ T + P+ + + Sbjct: 209 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRTGTSILVKTTDNAYPRVLETPAPGVS 268 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNATER--LTNTLFINISASYSPDSSQI 316 P +S +G+ S Q D + + A R + +S S+SPD+ + Sbjct: 269 DRLPAWSPDGREIAFSRQAPDGSCRVMIAAATGPAAAREVVRCDRADMLSFSWSPDARAL 328 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFA 372 +F S G ++ + + ++ +A FD P +SP G I F + Sbjct: 329 LFGSMTGSYGAARIRRLNLETGQWQTLNYPAQAGDFDYAPRYSPDGHWIVFLRNPQLGDL 388 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G+ ERL + +++ +W P G +IF R+ D ++LY +DL Sbjct: 389 WRIPAEGGAAERLTHDTADIWGWSWLPDGSGVIFGRRV--DIEARLYRLDL 437 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 106/317 (33%), Gaps = 60/317 (18%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S+ V D A R L TP+ P +SP+ +++A++ + RV + Sbjct: 237 SLTGDRTGTSILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMI 296 Query: 242 MDTRIDRAPKRIGN-FRSMILAPRFSSNGKRALISVQKD--EAMDIYSVDLQSNATERLT 298 A + + R+ +L+ +S + + L A I ++L++ + L Sbjct: 297 AAATGPAAAREVVRCDRADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTL- 355 Query: 299 NTLF----INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 N + + YSPD IVF + + L+ + + G +R++ D + W Sbjct: 356 NYPAQAGDFDYAPRYSPDGHWIVFLRNPQ-LGDLWRIPAEGGAAERLTHDTADIWGW-SW 413 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKK------------------------------------ 378 P G + F + + + + Sbjct: 414 LPDGSGVIFGRRVDIEARLYRLDLLDRSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVYQ 473 Query: 379 ------DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR---N 427 +G + RL P +P GR L+F+ + G G + G Sbjct: 474 VIRDTMNGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRLI 533 Query: 428 ETLINTPAYASDPQWVG 444 E L A+D W Sbjct: 534 EGLRPDSRQAAD--WSA 548 Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 16/233 (6%) Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMD 283 ++ + + + R + I L P S +G S+ D Sbjct: 186 QIMWRRVPASGAAQASAVLGSPKRPYQVITAGGGFDLTPSLSPDGAMVAYASLTGDRTGT 245 Query: 284 IYSVDLQSNATERLTNTLFINIS---ASYSPDSSQIVFESD-REGKEQLYVMQSNGSDQK 339 V NA R+ T +S ++SPD +I F +G ++ + + G Sbjct: 246 SILVKTTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMIAAATGPAAA 305 Query: 340 R-ISQDKEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLLV----EDSNL 392 R + + A WSP + F +G I + + Q + L Sbjct: 306 REVVRCDRADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQTLNYPAQAGDFD 365 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP-QWVG 444 AP +SP G ++F R L+ I G + W+ Sbjct: 366 YAPRYSPDGHWIVFLRN---PQLGDLWRIPAEGGAAERLTHDTADIWGWSWLP 415 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 52/256 (20%) Query: 213 ILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + PR+SP+ + + D+ R+ A +R+ + + I + +G Sbjct: 364 FDYAPRYSPDGHWIVFLRNPQLGDLWRI----PAEGGAAERLTHDTADIWGWSWLPDGSG 419 Query: 272 ALISVQKDEAMDIYSVDLQSNAT------------------------------------- 294 + + D +Y +DL + Sbjct: 420 VIFGRRVDIEARLYRLDLLDRSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVYQVIRDTM 479 Query: 295 ------ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEA 347 RL ++ + +PD Q+VF S+R G L+ + R+ + + Sbjct: 480 NGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRLIEGLRPD 539 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSL 404 S WS + + A V G RL V P + L Sbjct: 540 SRQAADWSADSQRLLVSGSDAAGHAALFEVTPSSGKVVRLPVPQPRPLQAIHLPDPDQVL 599 Query: 405 IFSRKKDGDTGSKLYS 420 + + DG T + LY Sbjct: 600 VLAAADDGHTFATLYD 615 >gi|317038874|ref|XP_003188680.1| hypothetical protein ANI_1_2282184 [Aspergillus niger CBS 513.88] Length = 319 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 95/258 (36%), Gaps = 51/258 (19%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE----DILRVYLMDTRI 246 + L + + DG+N + L S F +SP+ + V + + DI RV + T Sbjct: 53 SELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTST 112 Query: 247 -DRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSNATERLTNTLFIN 304 + + + + + S +GK + + ++ I + L++ + + LT I+ Sbjct: 113 VGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIPGIS 172 Query: 305 -----------ISASYSPDSSQIVFESDR----------EGKEQ-----LYVMQSNGSDQ 338 ++SPD IVF SDR G E +Y + NG+D Sbjct: 173 EAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARPNGTDF 232 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKF-----------------SGEKFAIGVMKKDGS 381 + +S + P +SP G + F + S +I + Sbjct: 233 RLVSSRSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLEGSYLNTSIVSIDFATG 292 Query: 382 QERLL--VEDSNLQAPTW 397 +R++ D +P++ Sbjct: 293 GDRIVHATGDGTKISPSF 310 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 57/282 (20%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + + ++VSG + A R + + R SPN ++ Sbjct: 10 LALATATLVSGASHYE----GQGHAARRAASDTYKGTFLHNRISPNYSEL---------- 55 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQSN-- 292 Y+ + A +G+ +S + K + ++ D DIY V + Sbjct: 56 ---YIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTST 112 Query: 293 ---ATERLTNTLFINISASYSPDSSQIVFESDR-EGKEQLYVMQSNGSDQKRIS------ 342 E + ++ ++ SAS SPD + F + R Q+ +M K ++ Sbjct: 113 VGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIPGIS 172 Query: 343 ----QDKEASYFDPVWSPQGDLIAFTKFSGEKFA---------------IGVMKKDGSQE 383 YF P WSP G+ I FT + I + +G+ Sbjct: 173 EAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARPNGTDF 232 Query: 384 RLLVEDSNL--QAPTWSPSGRSLIFSR-----KKDGDTGSKL 418 RL+ SN +P +SP+G+ L+F +G +L Sbjct: 233 RLVSSRSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPEL 274 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 35/197 (17%) Query: 283 DIYSVDLQSNATERL-TNTLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNG---- 335 ++Y + + + L + + AS+SPD+ + F S+R G Q +Y + NG Sbjct: 54 ELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTV 113 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVE------ 388 + SP G ++AF T + I +M + + L Sbjct: 114 GAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIPGISE 173 Query: 389 ------DSNLQAPTWSPSGRSLIFSRKKDGDTGS-------------KLYSIDLNGRNET 429 + PTWSP G ++F+ ++ +Y+ NG + Sbjct: 174 AANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQELSIYAARPNGTDFR 233 Query: 430 LINTPAY--ASDPQWVG 444 L+++ + P++ Sbjct: 234 LVSSRSNYTQGSPRFSP 250 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 25/145 (17%) Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQ- 382 +LY+ + +GS+ K + F WSP + FT + + I + +G+ Sbjct: 53 SELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTST 112 Query: 383 -----ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG--RNETLINT-- 433 E + + + SP G+ L F+ + T + + G +N TLI Sbjct: 113 VGAEVEPVASSPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLETGSLKNLTLIPGIS 172 Query: 434 -------------PAYASDPQWVGF 445 P ++ D +W+ F Sbjct: 173 EAANSALPNGYFKPTWSPDGEWIVF 197 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 365 KFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + S + + + DGS +LL +WSP + + F+ ++ GD + +Y + Sbjct: 47 RISPNYSELYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVA 106 Query: 423 LNGR 426 +NG Sbjct: 107 INGT 110 >gi|329957533|ref|ZP_08298008.1| WD40-like protein [Bacteroides clarus YIT 12056] gi|328522410|gb|EGF49519.1| WD40-like protein [Bacteroides clarus YIT 12056] Length = 1089 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 37/247 (14%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PAKGGTAIQLTTQESYESTPVWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 D++ + +RLT I ++++PD I+F + R + Sbjct: 84 YGNFDVFVMPANGGTAQRLTTHSAGEIPSAFTPDGKYILFSAAIQDPAESALFPRSAMTE 143 Query: 328 LYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 LY + G +++ EA FD G+L + S I Sbjct: 144 LYKVPVTGGRTEQVLGTPAEAVCFDKS----GELFFYQDQKGFEDQWRKHHTSSVTRDIW 199 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + + L + + P SP G+ L F ++DG + +Y+ LN R E + Sbjct: 200 MYDARTGKHANLTQRAGEDRNPVLSPDGQELYFLSERDGGS-FNVYAFPLN-RPEAVKAV 257 Query: 434 PAYASDP 440 ++ + P Sbjct: 258 TSFKTHP 264 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 65/356 (18%), Positives = 130/356 (36%), Gaps = 56/356 (15%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISD-----DIYQSITGEKGDFNSRILFVSESVV 185 +D K + + WRK H S +Y + TG+ + R V+ Sbjct: 167 FD-KSGELFFYQDQKGFEDQWRK--HHTSSVTRDIWMYDARTGKHANLTQRAGEDRNPVL 223 Query: 186 SGIIKNSLCVMDRDGAN-------------IRYLTPSRDQILFEPRFSPNQ------QKV 226 S + + +RDG + ++ +T + + S N Sbjct: 224 SPDGQELYFLSERDGGSFNVYAFPLNRPEAVKAVTSFKTHPVRFLSISNNGTLCYGYDGE 283 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y ++ + +V + TR DR N+ S + S +GK+ + +++ Sbjct: 284 IYTQQNNSEPQKVRIEITRDDRPQIARLNYTSGATSATVSPDGKQIAFIARG----EVFV 339 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD--------- 337 T+++T+T S S++PD+ + + S+R G QLY+ + + Sbjct: 340 TSADYATTKQITHTPANESSLSFAPDNRTLAYASERNGNWQLYLAKIARKEEPNFPNATL 399 Query: 338 --QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-- 393 ++ + P +SP G +AF + ++ + V+ D + R + + S Sbjct: 400 IKEEALLPSATVERTCPQFSPDGKELAFIE---DRIRLMVLNLDTKKVRRITDGSTWYST 456 Query: 394 ----APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQ 441 + WSP G+ L F + D S + + G + L N+ + P+ Sbjct: 457 DGEFSYAWSPDGKWFTLEFIGNRH-DPYSDIGLVSAQGNSPIVNLTNSGYMSGSPR 511 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 87/255 (34%), Gaps = 32/255 (12%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 ++ S K + + D + + SP+ +++A+ + Sbjct: 284 IYTQQNNSEPQKVRIEITRDD--RPQIARLNYTSGATSATVSPDGKQIAFIARGE----- 336 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + K+I + + + F+ + + + +++ +Y + Sbjct: 337 -VFVTSADYATTKQITHTPANESSLSFAPDNRTLAYASERNGNWQLYLAKIARKEEPNFP 395 Query: 299 NTLFINIS------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 N I +SPD ++ F DR +L V+ + +RI+ Sbjct: 396 NATLIKEEALLPSATVERTCPQFSPDGKELAFIEDRI---RLMVLNLDTKKVRRITDGST 452 Query: 347 ASY----FDPVWSPQGDL--IAFTKFSGEKF-AIGVMKKDGSQERL-LVEDSNLQ-APTW 397 F WSP G + F + + IG++ G+ + L + +P + Sbjct: 453 WYSTDGEFSYAWSPDGKWFTLEFIGNRHDPYSDIGLVSAQGNSPIVNLTNSGYMSGSPRF 512 Query: 398 SPSGRSLIFSRKKDG 412 + G +++F ++ G Sbjct: 513 ALDGNAILFKTERYG 527 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 48/299 (16%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT ++ P +SP+ +++A+A+ + V++M Sbjct: 41 YKGDIYKVPAKGGTAIQLTT-QESYESTPVWSPDGKQIAFASDRYGN-FDVFVMPAN-GG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 +R+ + + F+ +GK L S + ++Y V + TE++ Sbjct: 98 TAQRLTTHSAGEIPSAFTPDGKYILFSAAIQDPAESALFPRSAMTELYKVPVTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T A S ++ F D++G +++ + ++Q Sbjct: 158 LGTPA---EAVCFDKSGELFFYQDQKGFEDQWRKHHTSSVTRDIWMYDARTGKHANLTQ- 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW---SPS 400 + +PV SP G + F ++ G F + + + V + S + Sbjct: 214 RAGEDRNPVLSPDGQELYFLSERDGGSFNVYAFPLNRPEAVKAVTSFKTHPVRFLSISNN 273 Query: 401 GRSL------IFSRKKDGDTGSKLYSIDLNGRNE--TLINTPAY-----ASDPQWVGFM 446 G I++++ + + I + R + L T + D + + F+ Sbjct: 274 GTLCYGYDGEIYTQQNNSEPQKVRIEITRDDRPQIARLNYTSGATSATVSPDGKQIAFI 332 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 14/100 (14%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G IAF I + G L + ++ P WSP G+ + F+ + G Sbjct: 30 ISPDGTEIAFCYKGD----IYKVPAKGGTAIQLTTQESYESTPVWSPDGKQIAFASDRYG 85 Query: 413 DTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 + ++ + NG + T A+ D +++ F Sbjct: 86 NF--DVFVMPANGGTAQRLTTHSAGEIPSAFTPDGKYILF 123 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 123/348 (35%), Gaps = 55/348 (15%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V K+ +PA+ ++ + + G++ + ++ + Sbjct: 339 VTSADYATTKQITHTPANESSLSFAPDNRTLAYASERNGNWQLYLAKIARKEEPNFPNAT 398 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L L PS P+FSP+ +++A+ ED +R+ +++ + +R Sbjct: 399 LI-------KEEALLPSATVERTCPQFSPDGKELAFI----EDRIRLMVLNLDT-KKVRR 446 Query: 253 IGNFRSM-----ILAPRFSSNGKRA---LISVQKDEAMDIYSVDLQSNAT-ERLTNTLFI 303 I + + + +S +GK I + D DI V Q N+ LTN+ ++ Sbjct: 447 ITDGSTWYSTDGEFSYAWSPDGKWFTLEFIGNRHDPYSDIGLVSAQGNSPIVNLTNSGYM 506 Query: 304 NISASYSPDSSQIVFESDREG-----------KEQLYVMQSNGSDQKRISQDKEASY--- 349 + S ++ D + I+F+++R G L + + D+ +S++ Sbjct: 507 SGSPRFALDGNAILFKTERYGMRAHASWGSQDDAMLIFLNQDAYDKYCLSKEDYELRKEL 566 Query: 350 -------FDPVWSPQGDLIAFTKFSG---------EKFAIGVMKKDGSQERLLVEDSNLQ 393 D + + + + + RL S++ Sbjct: 567 EAEQKKTQDKDTAKDKKRSKKETEQEKTGNDKSQVKDIVVELKNIEDRIVRLTPNSSDMG 626 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN--TPAYASD 439 + S G SL + + G L+ +DL ++ L++ +AS Sbjct: 627 SVIISKDGESLYYFA--AFEDGYDLWKMDLRKKDTRLLHKMDAGWASM 672 >gi|145593173|ref|YP_001157470.1| periplasmic component of the Tol biopolymer transport system-like protein [Salinispora tropica CNB-440] gi|145302510|gb|ABP53092.1| Periplasmic component of the Tol biopolymer transport system-like protein [Salinispora tropica CNB-440] Length = 590 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 96/305 (31%), Gaps = 21/305 (6%) Query: 144 FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGAN 202 + + W + DDI + + + + F S + L Sbjct: 58 YEIATEQWHQGTRGAGDDIEAQWSPDS----ACLAFTSSRCGHKAVWLYRLHEARI---- 109 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 P +SP+ K+ + R + + P + + A Sbjct: 110 --SRLTFGPYDEEYPNWSPDGSKITFV--GGGWAQRQVYLVSATGGPPMPVTDEPGRTGA 165 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 + +G + A + + L + ++T+ + + S + F Sbjct: 166 CTYLPDGSGLICHSYDTGASAVSILPLDGSMPRQVTDGSTWDYKPTVSSAHPVVAFSRSL 225 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 EG+ ++V Q + R + P W+ G + F + I V+ + Sbjct: 226 EGRSVIWVQQLAEPYRGRALVVEAGDDRWPNWTADGQHLFFHRLVDRGVGIWVLDRRTDT 285 Query: 383 ERLLVEDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 +V + P + SP G LI++ ++ G + K+ I G ++ A+ Sbjct: 286 VTQVV--GPDEQPRYGNISPDGTRLIYAAEESGRSVVKVREIS--GGLTKVLPL-GDAAF 340 Query: 440 PQWVG 444 PQW Sbjct: 341 PQWSP 345 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 8/202 (3%) Query: 216 EPRFSPNQQKVAYATYDDEDILR---VYLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKR 271 P++SPN + VAY T D Y + T + + P +S + R Sbjct: 340 FPQWSPNGRTVAYLTRDVSRPRWEIATYDLATATSTVWTCGVTWPKSLHGPLDWSPDSTR 399 Query: 272 ALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG--KEQL 328 + S + D+ +DL+ + +LT + + + S++PD + +VF S R G Sbjct: 400 LVFSTDTEPFEADLCVLDLRDGSVTKLTEDPWWDEAPSWTPDGTGVVFLSTRGGDWTWGF 459 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y M + + +++ +P P G LI ++ + DG L Sbjct: 460 YRMDLSTGEIHALARPDYIEKNNPRMLPDGTLI-YSLAVSGIEDLFEQLPDGRGRVLSSV 518 Query: 389 DSNLQAPTWSPSGRSLIFSRKK 410 ++ P S G L F+R Sbjct: 519 GPAVRYPVPSRDGSMLAFTRTH 540 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 6/229 (2%) Query: 218 RFSPNQQKVAYATYDDEDI-LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 SP+ + ++ + L Y + T R + ++S + + Sbjct: 35 AISPDGTRFVASSRRTGSLNLWFYEIATEQWHQGTRGA---GDDIEAQWSPDSACLAFTS 91 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + ++ L RLT + ++SPD S+I F + Q+Y++ + G Sbjct: 92 SRCGHKAVWLYRLHEARISRLTFGPYDEEYPNWSPDGSKITFVGGGWAQRQVYLVSATGG 151 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-P 395 ++ D+ + P G + + A+ ++ DGS R + + S P Sbjct: 152 PPMPVT-DEPGRTGACTYLPDGSGLICHSYDTGASAVSILPLDGSMPRQVTDGSTWDYKP 210 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 T S + + FSR +G + + + R L+ P W Sbjct: 211 TVSSAHPVVAFSRSLEGRSVIWVQQLAEPYRGRALVVEAGDDRWPNWTA 259 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 75/185 (40%), Gaps = 4/185 (2%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R+ + S +G R + S ++ +++++ ++ + + T +I A +SP Sbjct: 23 RLAEDPAGAGDGAISPDGTRFVASSRRTGSLNLWFYEIATEQWHQGTRGAGDDIEAQWSP 82 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 DS+ + F S R G + +++ + + + R++ P WSP G I F + Sbjct: 83 DSACLAFTSSRCGHKAVWLYRLHEARISRLTF-GPYDEEYPNWSPDGSKITFVGGGWAQR 141 Query: 372 AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + ++ G + + A T+ P G LI G + + + L+G Sbjct: 142 QVYLVSATGGPPMPVTDEPGRTGACTYLPDGSGLICHSYDTGASAVSI--LPLDGSMPRQ 199 Query: 431 INTPA 435 + + Sbjct: 200 VTDGS 204 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 97/261 (37%), Gaps = 20/261 (7%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 ++ DG+ R +T ++P S VA+ + E +++ + + Sbjct: 189 ILPLDGSMPRQVTDG-STWDYKPTVSSAHPVVAF-SRSLEGRSVIWVQQLAEPYRGRALV 246 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY---SP 311 P ++++G+ D + I+ +D +++ ++ + + Y SP Sbjct: 247 VEAGDDRWPNWTADGQHLFFHRLVDRGVGIWVLDRRTDTVTQV---VGPDEQPRYGNISP 303 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGE 369 D +++++ ++ G+ + V + +G K + P WSP G +A+ S Sbjct: 304 DGTRLIYAAEESGRSVVKVREISGGLTKVL---PLGDAAFPQWSPNGRTVAYLTRDVSRP 360 Query: 370 KFAIGVMKKDGSQERLLVEDSNL----QAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL- 423 ++ I + + P WSP L+FS + + L +DL Sbjct: 361 RWEIATYDLATATSTVWTCGVTWPKSLHGPLDWSPDSTRLVFSTDTE-PFEADLCVLDLR 419 Query: 424 NGRNETLINTPAYASDPQWVG 444 +G L P + P W Sbjct: 420 DGSVTKLTEDPWWDEAPSWTP 440 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 19/232 (8%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF---SSNGKRA 272 P ++ + Q + + D + ++++D R D + +G PR+ S +G R Sbjct: 254 WPNWTADGQHLFFHRLVDRG-VGIWVLDRRTDTVTQVVGPDEQ----PRYGNISPDGTRL 308 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ--LYV 330 + + ++ + ++ T+ L L +SP+ + + + + + + Sbjct: 309 IYAAEESGRSVVKVREISGGLTKVL--PLGDAAFPQWSPNGRTVAYLTRDVSRPRWEIAT 366 Query: 331 MQSNGSDQK----RISQDKEASYFDPVWSPQGDLIAFTK-FSGEKFAIGVMKK-DGSQER 384 + ++ K + WSP + F+ + + V+ DGS + Sbjct: 367 YDLATATSTVWTCGVTWPKS-LHGPLDWSPDSTRLVFSTDTEPFEADLCVLDLRDGSVTK 425 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 L + +AP+W+P G ++F + GD Y +DL+ + P Y Sbjct: 426 LTEDPWWDEAPSWTPDGTGVVFLSTRGGDWTWGFYRMDLSTGEIHALARPDY 477 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 4/141 (2%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 RL + SPD ++ V S R G L+ + + ++ + Sbjct: 20 QLHRLAEDPAGAGDGAISPDGTRFVASSRRTGSLNLWFYEIATEQWHQGTR-GAGDDIEA 78 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 WSP +AFT A+ + + + RL + + P WSP G + F Sbjct: 79 QWSPDSACLAFTSSRCGHKAVWLYRLHEARISRLTFGPYDEEYPNWSPDGSKITFVG--G 136 Query: 412 GDTGSKLYSIDLNGRNETLIN 432 G ++Y + G + Sbjct: 137 GWAQRQVYLVSATGGPPMPVT 157 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 23/197 (11%) Query: 174 NSRILFVSESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 ++R++F +++ + LCV+D RDG+ + P ++P+ V + + Sbjct: 397 STRLVFSTDTEP---FEADLCVLDLRDGSVTKLTED--PWWDEAPSWTPDGTGVVFLSTR 451 Query: 233 DED-ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D Y MD PR +G + S+ D++ Sbjct: 452 GGDWTWGFYRMDLSTGEIHALARPDYIEKNNPRMLPDGT-LIYSLAVSGIEDLFEQLPDG 510 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY------------VMQSNGSDQK 339 L++ S D S + F R + Y + D + Sbjct: 511 RG-RVLSSVGPAVRYPVPSRDGSMLAFT--RTHRTVEYWLAKNVWGAGSPIADLADGDAR 567 Query: 340 RISQDKEASYFDPVWSP 356 R + PV SP Sbjct: 568 RRGTHGPQTRTGPVRSP 584 >gi|168701004|ref|ZP_02733281.1| peptidase S41 [Gemmata obscuriglobus UQM 2246] Length = 657 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 31/229 (13%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 ++L P S + +A+ DD + + P+R+ + P FS +G+ Sbjct: 27 RLLTMPAVSA--KNIAFVYADD------LWVADAGGKNPRRLTTDLGLEAYPVFSPDGQT 78 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EGKEQ 327 S Q D +D+Y++ + A RLT+ + ++PD ++F S R Q Sbjct: 79 IAFSAQYDGNVDVYTIPVTGGAPTRLTSHPSPDTVRGFTPDGKSVLFSSPRHVYSNRYTQ 138 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIGVM 376 L+ + G ++ F+ +SP GD IA+T G + + Sbjct: 139 LFTVPLTGGMPSQLPIPWG---FEAAYSPDGDYIAYTPVRDATPQWKNYRGGTHSRVWIY 195 Query: 377 KKDGSQER---LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + N P W G+ L F + GD Y D Sbjct: 196 DVKTHEVVEIPQPKDRCNDLDPNWV--GKKLYFRSDRAGDYNVFCYDTD 242 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 23/243 (9%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS ++ + + L V D G N R LT + P FSP+ Q +A++ D + + V Sbjct: 34 VSAKNIAFVYADDLWVADAGGKNPRRLTTDL-GLEAYPVFSPDGQTIAFSAQYDGN-VDV 91 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATE 295 Y + AP R+ + S F+ +GK L S + + +++V L Sbjct: 92 YTIPV-TGGAPTRLTSHPSPDTVRGFTPDGKSVLFSSPRHVYSNRYTQLFTVPLTGGMPS 150 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQ-----------LYVMQSNGSDQKRISQD 344 +L A+YSPD I + R+ Q +++ + I Q Sbjct: 151 QLPIPWGF--EAAYSPDGDYIAYTPVRDATPQWKNYRGGTHSRVWIYDVKTHEVVEIPQP 208 Query: 345 KEA-SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 K+ + DP W G + F + + D + + + ++ + G++ Sbjct: 209 KDRCNDLDPNWV--GKKLYFRSDRAGDYNVFCYDTDNKDVKAVTKFTDFPVLDINTDGKT 266 Query: 404 LIF 406 LIF Sbjct: 267 LIF 269 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 22/219 (10%) Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + R + S +G R + + +I +V + LTNT Sbjct: 292 IAIDNSESRPRFAKGSKYVRDVSVSPSGSRVAVEFRG----EIVTVPAEKGDARVLTNTP 347 Query: 302 FI-NISASYSPDSSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGD 359 + + ++SPD I + SD G+ QL + NG + K++ YFDPVWS Sbjct: 348 DVHERNPAWSPDGKTIAYFSDAGGEYQLVLAPQNGKGEPKKVKLSGNGFYFDPVWSRDSK 407 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-----DSNLQAPTWSPSGRSLIFSRKKDGDT 414 + F + F + V + + +VE L+ +WSP + +++S Sbjct: 408 KLLFRDNAQTVFYLEV---ESGKITKVVEPKHGLGRGLKPSSWSPDSKWVVYSINTPAQI 464 Query: 415 GSKLYSIDLN-GRNETLINTPAYASDPQ------WVGFM 446 S++Y+ L G + + + A+DP +V F+ Sbjct: 465 -SRVYAYSLEKGTSTPITDGLTEATDPAFDAGGKYVYFL 502 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 18/226 (7%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + S S V+ + + + + + R LT + D P +SP+ + +AY + + Sbjct: 315 VSPSGSRVAVEFRGEIVTVPAEKGDARVLTNTPDVHERNPAWSPDGKTIAYFSDAGGEYQ 374 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V K + P +S + K+ L +D A ++ ++++S ++ Sbjct: 375 LVLAPQNGKGEPKKVKLSGNGFYFDPVWSRDSKKLLF---RDNAQTVFYLEVESGKITKV 431 Query: 298 T---NTLFINISA-SYSPDSSQIVFESDREGK-EQLYVMQSNGSDQKRISQDKEASYFDP 352 + L + S+SPDS +V+ + + ++Y I+ D DP Sbjct: 432 VEPKHGLGRGLKPSSWSPDSKWVVYSINTPAQISRVYAYSLEKGTSTPIT-DGLTEATDP 490 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS 398 + G + F S + + + R P WS Sbjct: 491 AFDAGGKYVYFLGSSDTGMSKHGFSQSAADSRQ---------PRWS 527 >gi|218265125|ref|ZP_03478707.1| hypothetical protein PRABACTJOHN_04417 [Parabacteroides johnsonii DSM 18315] gi|218221580|gb|EEC94230.1| hypothetical protein PRABACTJOHN_04417 [Parabacteroides johnsonii DSM 18315] Length = 1088 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 30/205 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S NG+ + + D IY+V +LT + +SPD S+IVF SDR Sbjct: 29 PAISPNGETIAFTYKGD----IYTVPANGGKATQLTTHPAHDTRPVWSPDGSKIVFASDR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF- 371 G ++VM G K+++ A+ + +S I + ++F +F Sbjct: 85 NGNFDIFVMDKEGGSPKQLTT-HSANEYPETFS-DAKHILYSAAIQQDTKDSQFPSGQFP 142 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF----------SRKKDGDTGSKLYSI 421 I + DG + L +++ + G L++ + ++ Sbjct: 143 QIYRISLDGGRPE-LYSSLAMESLALNKKGDKLLYQDKKGYEDPWRKHHQSSITRDIWLC 201 Query: 422 DLNGRN--ETLINTPAYASDPQWVG 444 L + + + +P W Sbjct: 202 TLGPERSFQKITSFKGEDRNPVWAA 226 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 90/252 (35%), Gaps = 37/252 (14%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 L + + P SPN + +A+ DI V ++ + P + Sbjct: 18 LAENDPLWMRYPAISPNGETIAFTY--KGDIYTV----PANGGKATQLTTHPAHDTRPVW 71 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----- 320 S +G + + + ++ DI+ +D + + ++LT ++S D+ I++ + Sbjct: 72 SPDGSKIVFASDRNGNFDIFVMDKEGGSPKQLTTHSANEYPETFS-DAKHILYSAAIQQD 130 Query: 321 -----DREGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------- 363 G+ Q+Y + +G + S S + +GD + + Sbjct: 131 TKDSQFPSGQFPQIYRISLDGGRPELYSSLAMESL---ALNKKGDKLLYQDKKGYEDPWR 187 Query: 364 -TKFSGEKFAIGVMK--KDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 S I + + S +++ + P W+ G S + ++ G ++ Sbjct: 188 KHHQSSITRDIWLCTLGPERSFQKITSFKGEDRNPVWAADGSSFYYLSEEKGSF--NIFK 245 Query: 421 IDLNGRNETLIN 432 DL G++ I Sbjct: 246 NDLTGKSSRQIT 257 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 109/304 (35%), Gaps = 44/304 (14%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ EKG FN + ++ ++G + + +R+LT + L + + Sbjct: 231 FYYLSEEKGSFN-----IFKNDLTGKSSRQI--TNHTTHPVRFLTSDSNGNLC---YGYD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKDEA 281 + Y + +V + I + S S NGK V+ D Sbjct: 281 GE--IYTVKEGAQPKKVDVRIISDKVENDLIHQLKTSGATDIAISPNGKEVAFIVRGD-- 336 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 +Y + T+++TNT +SPD +V+ ++R +Y D K Sbjct: 337 --VYVTSVDYETTKQITNTPQQERDLDFSPDGRSLVYSAERGETWGVYQSSLVRKDDKYF 394 Query: 342 SQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS- 390 + +E + F P++SP G +AF + + V+ Q R +++ Sbjct: 395 TYAQELKEEPLVVTSQTSFQPMYSPDGKEVAFLENRTT---LRVINLKSKQVRTVLDGKY 451 Query: 391 ------NLQAPTWSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRNE--TLINTPAYASD 439 Q WSP + F K G + + + +G E L + ++ Sbjct: 452 NYSYADGDQHYQWSPDSKW--FLAKYIAVGGWNNTDIVLVKADGSGEMTNLTESGYSDNN 509 Query: 440 PQWV 443 +WV Sbjct: 510 AKWV 513 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 37/237 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN ++VA+ D VY+ K+I N FS +G+ + S + Sbjct: 321 AISPNGKEVAFIVRGD-----VYVTSVDY-ETTKQITNTPQQERDLDFSPDGRSLVYSAE 374 Query: 278 KDEAMDIYSVDL-----------QSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + E +Y L Q E L T + YSPD ++ F +R Sbjct: 375 RGETWGVYQSSLVRKDDKYFTYAQELKEEPLVVTSQTSFQPMYSPDGKEVAFLENRT--- 431 Query: 327 QLYVMQSNGSDQKRISQDKEASYFD-----PVWSPQGDLIA--FTKFSG-EKFAIGVMKK 378 L V+ + + K + WSP + G I ++K Sbjct: 432 TLRVINLKSKQVRTVLDGKYNYSYADGDQHYQWSPDSKWFLAKYIAVGGWNNTDIVLVKA 491 Query: 379 DGSQE-RLLVEDS-NLQAPTWSPSGRSLIFSRKKDG-------DTGSKLYSIDLNGR 426 DGS E L E + W G+++I+S + G +Y + +G Sbjct: 492 DGSGEMTNLTESGYSDNNAKWVLDGKAMIWSSDRAGYRSHGSWGAQGDVYIMFFDGE 548 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 31/229 (13%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K + + +G LT P +SP+ K+ +A+ + + +++MD + Sbjct: 41 TYKGDIYTVPANGGKATQLTTHPAH-DTRPVWSPDGSKIVFASDRNGN-FDIFVMD-KEG 97 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATER 296 +PK++ + FS + K L S + IY + L E Sbjct: 98 GSPKQLTTHSANEYPETFS-DAKHILYSAAIQQDTKDSQFPSGQFPQIYRISLDGGRPE- 155 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI---SQDKEASY---- 349 L ++L + S + + +++++ D++G E + S + I + E S+ Sbjct: 156 LYSSLAME-SLALNKKGDKLLYQ-DKKGYEDPWRKHHQSSITRDIWLCTLGPERSFQKIT 213 Query: 350 ------FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 +PVW+ G + F I G R + + Sbjct: 214 SFKGEDRNPVWAADGSSFYYLSEEKGSFNIFKNDLTGKSSRQITNHTTH 262 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 99/319 (31%), Gaps = 92/319 (28%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT---- 230 S+I+F S+ + + VMD++G + + LT + FS + + + Y+ Sbjct: 76 SKIVFASDRNGN----FDIFVMDKEGGSPKQLTT-HSANEYPETFS-DAKHILYSAAIQQ 129 Query: 231 ------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 + ++Y + R P+ + LA + G + L K D Sbjct: 130 DTKDSQFPSGQFPQIYRISLDGGR-PELYSSLAMESLA--LNKKGDKLLYQ-DKKGYEDP 185 Query: 285 YSVDLQSNATE--------------RLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + QS+ T ++T+ + + ++ D S + S+ +G ++ Sbjct: 186 WRKHHQSSITRDIWLCTLGPERSFQKITSFKGEDRNPVWAADGSSFYYLSEEKGSFNIFK 245 Query: 331 MQSNGSDQKRISQ-----------DKEASY------------------------------ 349 G ++I+ D + Sbjct: 246 NDLTGKSSRQITNHTTHPVRFLTSDSNGNLCYGYDGEIYTVKEGAQPKKVDVRIISDKVE 305 Query: 350 ------------FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-T 396 D SP G +AF + V D + + + Sbjct: 306 NDLIHQLKTSGATDIAISPNGKEVAFIVRGD----VYVTSVDYETTKQITNTPQQERDLD 361 Query: 397 WSPSGRSLIFSRKKDGDTG 415 +SP GRSL++S ++ G Sbjct: 362 FSPDGRSLVYSAERGETWG 380 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 16/153 (10%) Query: 211 DQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 Q F+P +SP+ ++VA+ ++ + R K ++ ++S + Sbjct: 409 SQTSFQPMYSPDGKEVAFLENRTTLRVINLKSKQVRTVLDGKYNYSYADGDQHYQWSPDS 468 Query: 270 KRAL---ISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG- 324 K L I+V DI V LT + + + +A + D +++ SDR G Sbjct: 469 KWFLAKYIAVGGWNNTDIVLVKADGSGEMTNLTESGYSDNNAKWVLDGKAMIWSSDRAGY 528 Query: 325 --------KEQLYVMQSNGS--DQKRISQDKEA 347 + +Y+M +G D+ R+S++++A Sbjct: 529 RSHGSWGAQGDVYIMFFDGEAYDKFRLSKEEQA 561 >gi|305665561|ref|YP_003861848.1| acylaminoacyl-peptidase [Maribacter sp. HTCC2170] gi|88710317|gb|EAR02549.1| acylaminoacyl-peptidase [Maribacter sp. HTCC2170] Length = 681 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 55/276 (19%) Query: 212 QILFEPRFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 Q +P+ SPN + Y + + M +++ + S +P++S Sbjct: 36 QYASDPQISPNGDWIVYRRMRMDVMKDRAVGNLWMLKGDGSQHQKLTSRESGESSPKWSP 95 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-------- 319 +G R DE +IY + S +++ F S +SP +Q+ F Sbjct: 96 SGDRLAFVSDTDEESEIYIYWVNSGKIAKISQLPFSPSSLVWSPKGNQLAFTMNKEKKPP 155 Query: 320 --------------------SDR------------EGKEQLYVMQSNGSDQKRISQDKEA 347 +DR G ++V+ + G ++I+ Sbjct: 156 VIAKMPKKPKGAKWADSPRVTDRLYHEADGRGYIKPGFTHIFVVPALGGAPRQITSGDHH 215 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVED-SNLQAPTWSP 399 WSP GD I F+ E + + + + + L + P SP Sbjct: 216 HRGSLSWSPGGDKIYFSANRNEDWEYNFRNSEVYEVGVQSEEIKALTDRKGPDSNPKVSP 275 Query: 400 SGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLIN 432 +G+ + + D + L+ ++ +G ++ I+ Sbjct: 276 NGKYIAYIGYDDKVQTYQVRKLHLMNADGSDKKAIS 311 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 109/329 (33%), Gaps = 74/329 (22%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 ++ G + R+ DV + + S +Q +T + + Sbjct: 42 QISPNGDWIVYRRMRM-DVMKDRAVGNLWMLKGDGSQ-----------HQKLTSRESGES 89 Query: 175 SRILFVSES----VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR---FSPNQQKVA 227 S S V ++ + + + I + Q+ F P +SP ++A Sbjct: 90 SPKWSPSGDRLAFVSDTDEESEIYIYWVNSGKIAKI----SQLPFSPSSLVWSPKGNQLA 145 Query: 228 YATYDDEDILRV--------------------------------------YLMDTRIDRA 249 + ++ + + + A Sbjct: 146 FTMNKEKKPPVIAKMPKKPKGAKWADSPRVTDRLYHEADGRGYIKPGFTHIFVVPALGGA 205 Query: 250 PKRIGNFRSMILAP-RFSSNGKRALISVQKDE-------AMDIYSVDLQSNATERLTNTL 301 P++I + +S G + S ++E ++Y V +QS + LT+ Sbjct: 206 PRQITSGDHHHRGSLSWSPGGDKIYFSANRNEDWEYNFRNSEVYEVGVQSEEIKALTDRK 265 Query: 302 FINISASYSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + SP+ I + + + +L++M ++GSD+K IS++ + S + VW Sbjct: 266 GPDSNPKVSPNGKYIAYIGYDDKVQTYQVRKLHLMNADGSDKKAISENLDRSISNIVWDD 325 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + + F+ IG + G ++ Sbjct: 326 KSEGLYFSYDDKGNGKIGYITIKGKVSKI 354 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGR-NETLINTPAYASDP 440 L + P SP+G +++ R + L+ + +G ++ L + + S P Sbjct: 32 LYDLQYASDPQISPNGDWIVYRRMRMDVMKDRAVGNLWMLKGDGSQHQKLTSRESGESSP 91 Query: 441 QWVG 444 +W Sbjct: 92 KWSP 95 >gi|313205538|ref|YP_004044715.1| peptidase s41 [Riemerella anatipestifer DSM 15868] gi|312444854|gb|ADQ81209.1| peptidase S41 [Riemerella anatipestifer DSM 15868] gi|315023408|gb|EFT36418.1| putative Tricorn-like protease [Riemerella anatipestifer RA-YM] Length = 1079 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 28/199 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK+ + D IY+V + + RLT + +SPD I F SDRE Sbjct: 30 AISPDGKKIAFTYMGD----IYAVSTEGGSAVRLTTHPAYDSDPVWSPDGKFIAFSSDRE 85 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----------FSGEKFA 372 G +++++M S G + K+++ +A+ +S G I ++ F Sbjct: 86 NGFQRIFIMPSQGGEAKQVTFHSQAAL-PLAFSKDGKNIIYSANLQNSPQNVIFPSASIQ 144 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT----------GSKLYSID 422 + + DG Q + + S ++ + + +G ++ + K + ++ D Sbjct: 145 LYQISIDGGQPKRIFNSST-KSISLTSNGEAMYYENIKGNENQWRKHHTSSVTRDIWRYD 203 Query: 423 LNGRNET-LINTPAYASDP 440 + T +IN +P Sbjct: 204 FKSKKHTQIINWKGEDRNP 222 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 33/232 (14%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + L SP+ +K+A+ D +Y + T A R+ + P +S Sbjct: 20 NNSPLWLRNIAISPDGKKIAFTYMGD-----IYAVSTEGGSAV-RLTTHPAYDSDPVWSP 73 Query: 268 NGKRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +GK S + + I+ + Q +++T + ++S D I++ ++ + Sbjct: 74 DGKFIAFSSDRENGFQRIFIMPSQGGEAKQVTFHSQAALPLAFSKDGKNIIYSANLQNSP 133 Query: 327 Q----------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------ 370 Q LY + +G KRI +S + G+ + + G + Sbjct: 134 QNVIFPSASIQLYQISIDGGQPKRI---FNSSTKSISLTSNGEAMYYENIKGNENQWRKH 190 Query: 371 ------FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTG 415 I + ++ + P S G++L F ++ G+ Sbjct: 191 HTSSVTRDIWRYDFKSKKHTQIINWKGEDRNPVLSSDGKTLYFLSERAGNFN 242 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 111/283 (39%), Gaps = 32/283 (11%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V ++ V+ K +D +RYL+ + + + +S + + + V Sbjct: 243 VFKTSVAQPSKIEQVTFHKD-FPVRYLSVANNGYI---AYSYDGEIYLSKPMGKPQKVNV 298 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 ++ ++ K + F S + S +GK+ + ++ +++ N T+++T Sbjct: 299 NIISDVSNQQSKFMA-FSSGATSSSVSPDGKQIAMVIRG----EVFVNSTDYNTTKQITK 353 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVM------QSNGSDQKRISQDK-----EAS 348 T S+S D +V+ S R+G LY N S+ I+++K + Sbjct: 354 TAAAEQGVSFSADGRSLVYASYRDGYWDLYKASIQRKEDPNFSNATLITEEKLIPSDNSE 413 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED------SNLQAPTWSPSGR 402 P +SP G +AF + I + + + R + + + WSP G+ Sbjct: 414 KMYPQYSPDGKEVAFVQNRT---HIAIYNFETKKIRKITDPKYQTERNGYINYEWSPDGK 470 Query: 403 SLIFSR-KKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQW 442 L+ +D S + I G E + ++ + ++P+W Sbjct: 471 WLVVQYIARDRVPYSDIGIISTEGGKEIVNITDSGYFDTNPRW 513 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 30/220 (13%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ +++A + +++ K+I + FS++G+ + + +D Sbjct: 325 PDGKQIAMVIRGE------VFVNSTDYNTTKQITKTAAAEQGVSFSADGRSLVYASYRDG 378 Query: 281 AMDIYSV------DLQSNATERLTNT---LFINIS---ASYSPDSSQIVFESDREGKEQL 328 D+Y D + +T N YSPD ++ F +R + Sbjct: 379 YWDLYKASIQRKEDPNFSNATLITEEKLIPSDNSEKMYPQYSPDGKEVAFVQNRT---HI 435 Query: 329 YVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDLIA--FTKFSGEKF-AIGVMKKDGS 381 + ++I+ K Y + WSP G + + + IG++ +G Sbjct: 436 AIYNFETKKIRKITDPKYQTERNGYINYEWSPDGKWLVVQYIARDRVPYSDIGIISTEGG 495 Query: 382 QERL-LVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLY 419 +E + + + P W+ G ++I+ ++ G + Sbjct: 496 KEIVNITDSGYFDTNPRWALDGNAIIWKSERYGMRNHASW 535 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 61/388 (15%), Positives = 116/388 (29%), Gaps = 105/388 (27%) Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 ++ R H D ++ F++ S + +M G + Sbjct: 51 TEGGSAVRLTTHPAYDS--------DPVWSPDGKFIAFSSDRENGFQRIFIMPSQGGEAK 102 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI--------DRAPKRIGNF 256 +T Q FS + + + Y+ V I PKRI N Sbjct: 103 QVT-FHSQAALPLAFSKDGKNIIYSANLQNSPQNVIFPSASIQLYQISIDGGQPKRIFNS 161 Query: 257 RSMILAPRFSSNGKRALISVQKDE------------AMDIYSVDLQSNATERLTNTLFIN 304 + ++ +SNG+ K DI+ D +S ++ N + Sbjct: 162 STKSIS--LTSNGEAMYYENIKGNENQWRKHHTSSVTRDIWRYDFKSKKHTQIINWKGED 219 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKE--------ASYFDPVWS 355 + S D + F S+R G ++ + S ++++ K+ A+ +S Sbjct: 220 RNPVLSSDGKTLYFLSERAGNFNVFKTSVAQPSKIEQVTFHKDFPVRYLSVANNGYIAYS 279 Query: 356 ---------------------------------------------PQGDLIAFTKFSGEK 370 P G IA Sbjct: 280 YDGEIYLSKPMGKPQKVNVNIISDVSNQQSKFMAFSSGATSSSVSPDGKQIAMVIRG--- 336 Query: 371 FAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR--- 426 + V D + + + + + + ++S GRSL+++ +DG LY + + Sbjct: 337 -EVFVNSTDYNTTKQITKTAAAEQGVSFSADGRSLVYASYRDGYW--DLYKASIQRKEDP 393 Query: 427 ---NETLIN----TPAYASD---PQWVG 444 N TLI P+ S+ PQ+ Sbjct: 394 NFSNATLITEEKLIPSDNSEKMYPQYSP 421 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 25/172 (14%) Query: 218 RFSPNQQKVAYATYDDE----------DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 FS + + + YA+Y D + + K I + S + P++S Sbjct: 362 SFSADGRSLVYASYRDGYWDLYKASIQRKEDPNFSNATLITEEKLIPSDNSEKMYPQYSP 421 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTN-------TLFINISASYSPDSSQIVFE- 319 +GK + I + ++ ++T+ +IN +SPD +V + Sbjct: 422 DGKEVAFVQNR---THIAIYNFETKKIRKITDPKYQTERNGYINYE--WSPDGKWLVVQY 476 Query: 320 --SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 DR + ++ + G + D +P W+ G+ I + Sbjct: 477 IARDRVPYSDIGIISTEGGKEIVNITDSGYFDTNPRWALDGNAIIWKSERYG 528 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 87/255 (34%), Gaps = 30/255 (11%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 L PS + P++SP+ ++VA+ + + + R+ + + Sbjct: 406 LIPSDNSEKMYPQYSPDGKEVAFVQNRTHIAIYNFETKKIRKITDPKYQTERNGYINYEW 465 Query: 266 SSNGKRALI---SVQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESD 321 S +GK ++ + + DI + + +T++ + + + ++ D + I+++S+ Sbjct: 466 SPDGKWLVVQYIARDRVPYSDIGIISTEGGKEIVNITDSGYFDTNPRWALDGNAIIWKSE 525 Query: 322 REG-----------KEQLYVMQSNGSDQKRISQD-------------KEASYFDPVWSPQ 357 R G + + + D+ R++++ K + Sbjct: 526 RYGMRNHASWGSMSDQMIVFLNREAYDKYRMNKEEYELLTEAEKNEKKSETEDAKDGKDD 585 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 + I RL S L S G+ L + + G Sbjct: 586 KKETPKKDKKSKDINIEWENLSERVVRLTPNSSELGDAIISKDGKKLYYLAS--FEKGFD 643 Query: 418 LYSIDLNGRNETLIN 432 L+ DL R+ L++ Sbjct: 644 LWVHDLRERSTKLLS 658 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%) Query: 385 LLVEDSNLQAPTW------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYA 437 + +P W SP G+ + F+ +Y++ G + L PAY Sbjct: 13 VWTSAFGNNSPLWLRNIAISPDGKKIAFTYM------GDIYAVSTEGGSAVRLTTHPAYD 66 Query: 438 SDPQWVG 444 SDP W Sbjct: 67 SDPVWSP 73 >gi|162449890|ref|YP_001612257.1| hypothetical protein sce1619 [Sorangium cellulosum 'So ce 56'] gi|161160472|emb|CAN91777.1| hypothetical protein sce1619 [Sorangium cellulosum 'So ce 56'] Length = 408 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 89/285 (31%), Gaps = 60/285 (21%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-------APRFSSNGKR 271 +SP+ +K+ + + D + + +R+ N + AP S+ + Sbjct: 97 WSPDGRKLVFQSTRDGNTCDQQYILDLESGEVRRVSNGQGKTTCGYFLFPAPATSAQARV 156 Query: 272 ALISVQKDEAM------------------DIYSVDLQSNATERLTNTLFINISASYSPDS 313 S DIY+ + + L + A+ + D Sbjct: 157 LFASTHAAGEACPPKPDHSQGYVWPLDEFDIYTANADGSELRPLIQGKGYDAEATVAFDG 216 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK--- 370 S++VF S R+G +LY + +GSD KRI+ +SP + + Sbjct: 217 SRLVFTSTRDGDIELYTAKLDGSDVKRITS-TPGYDGGAFFSPDATKLVWRASRPTGPAL 275 Query: 371 ----------------FAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRK---- 409 I V DG R + + AP + P R ++F+ Sbjct: 276 DDYRALLAKGLVRPSALEIFVAGADGQNPRPVTRNGRANFAPYFLPDSRRILFASDFSTP 335 Query: 410 --KDGDTGSKLYSIDLNGRN--------ETLINTPAYASDPQWVG 444 G LY +D + E + + S P + Sbjct: 336 QGARGMPNFDLYLVDSDAPPAADGVPPVERVTFYEGFDSFPMFSP 380 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 85/213 (39%), Gaps = 37/213 (17%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D +Y + + + + + +G R + + +D +++Y+ L + Sbjct: 183 DEFDIYTANAD-GSELRPLIQGKGYDAEATVAFDGSRLVFTSTRDGDIELYTAKLDGSDV 241 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKE-------------------QLYVMQSNG 335 +R+T+T + A +SPD++++V+ + R +++V ++G Sbjct: 242 KRITSTPGYDGGAFFSPDATKLVWRASRPTGPALDDYRALLAKGLVRPSALEIFVAGADG 301 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--------KFAIGVMK------KDGS 381 + + ++++ A+ F P + P I F F + ++ DG Sbjct: 302 QNPRPVTRNGRAN-FAPYFLPDSRRILFASDFSTPQGARGMPNFDLYLVDSDAPPAADGV 360 Query: 382 Q--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 ER+ + P +SP+G ++F+ + G Sbjct: 361 PPVERVTFYEGFDSFPMFSPTGEHVVFASNRHG 393 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 14/103 (13%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRI 246 + V DG N R +T + + F P F P+ +++ +A+ + L Sbjct: 293 EIFVAGADGQNPRPVTRNG-RANFAPYFLPDSRRILFASDFSTPQGARGMPNFDLYLVDS 351 Query: 247 DRAP--------KRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 D P +R+ + P FS G+ + + + A Sbjct: 352 DAPPAADGVPPVERVTFYEGFDSFPMFSPTGEHVVFASNRHGA 394 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 382 QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + R L WSP GR L+F +DG+T + Y +DL ++ Sbjct: 82 ELRQLTFGGENAEAYWSPDGRKLVFQSTRDGNTCDQQYILDLESGEVRRVSNG 134 >gi|300775443|ref|ZP_07085305.1| dipeptidyl peptidase IV N [Chryseobacterium gleum ATCC 35910] gi|300506183|gb|EFK37319.1| dipeptidyl peptidase IV N [Chryseobacterium gleum ATCC 35910] Length = 1063 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 95/280 (33%), Gaps = 67/280 (23%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + L P SP+ + AY +YD DI RV RI + PR S +G Sbjct: 22 KSYFLSSPSLSPDGKT-AYFSYD-GDIWRV----DSNGGNASRITALDGEEINPRVSPDG 75 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 K S + D+Y + + ++LT + ++S DS I F S+R + Sbjct: 76 KWLAFSSNQYGNYDLYVMPSEGGTIKQLTFHTGKDEIENWSWDSKTIYFTSNRNNNFGSF 135 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLI---------------------------- 361 G +++ + + +P G+ + Sbjct: 136 KTTIEGKTPQKLFNNYFNNTNGLAETPAGEYLFTSSSESAHQVQRKRYKGENNPDILGYN 195 Query: 362 -------AFTKFSGEKFA-------------------IGVMKKDGSQERLLVE-DSNLQA 394 +T + G+ F + K +G ++ L + D++++ Sbjct: 196 PKNNTFKQYTNYEGKDFNPSVDKNGIIYFISDENNGEYNLYKIEGGKKTALTQFDTSIKK 255 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 P S G +IF + +LY+ D+ + L+N Sbjct: 256 PFVSADGTKIIFEKDY------QLYTYDVASKKTRLLNVN 289 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 92/215 (42%), Gaps = 19/215 (8%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +K+A+ + + + + +++ + + + ++ + + L + + Sbjct: 314 SPDGKKMAFISRG------ILFVSDVEGKFAQQVTDGKERAMEVKWLKDNRTLLYNQTYN 367 Query: 280 EAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 + ++V ++LT L N S + + D S+ V+ S G++++ ++ + Sbjct: 368 GYQNWFTVSADGKGQPKQLTQDLRNNRSITLNNDLSKAVYLS---GRDEVRLLDLKDFNS 424 Query: 339 KRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAP 395 I +D+ ++ + P +SP + + F+ + I + Q L + + P Sbjct: 425 TTIVKDEIWAFQNSRPSFSPNNEYVLFSAKRNFELDIFIYNIKKGQTLNLTNTGVSEEDP 484 Query: 396 TWSPSGRSLIFSRKKD------GDTGSKLYSIDLN 424 WSP+G+ + F+ + G S +Y + L+ Sbjct: 485 VWSPNGKYIYFASDRTNPSYPLGMQKSNIYRMALD 519 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 101/310 (32%), Gaps = 79/310 (25%) Query: 200 GANIRY----LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 G N + + + F P N + + + ++ +Y ++ + Sbjct: 193 GYNPKNNTFKQYTNYEGKDFNPSVDKNG-IIYFISDENNGEYNLYKIE---GGKKTALTQ 248 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL-----TN-----TLFINI 305 F + I P S++G + + ++ +Y+ D+ S T L TN N+ Sbjct: 249 FDTSIKKPFVSADGTKIIF----EKDYQLYTYDVASKKTRLLNVNLNTNKTLEKEQNFNV 304 Query: 306 SASYS-----PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + S PD ++ F S + L+V G ++++ KE + + W Sbjct: 305 ENNISYYDVSPDGKKMAFIS----RGILFVSDVEGKFAQQVTDGKERAM-EVKWLKDNRT 359 Query: 361 IAFTKFSGEKFAIGVMKKDG-SQERLLVED------------------------------ 389 + + + + DG Q + L +D Sbjct: 360 LLYNQTYNGYQNWFTVSADGKGQPKQLTQDLRNNRSITLNNDLSKAVYLSGRDEVRLLDL 419 Query: 390 ---------------SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 P++SP+ ++FS K++ + +Y+I G+ L NT Sbjct: 420 KDFNSTTIVKDEIWAFQNSRPSFSPNNEYVLFSAKRNFELDIFIYNIK-KGQTLNLTNTG 478 Query: 435 AYASDPQWVG 444 DP W Sbjct: 479 VSEEDPVWSP 488 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 44/302 (14%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 HT D+I E ++S+ ++ + + + + +G + L + Sbjct: 106 HTGKDEI------ENWSWDSKTIYFTSNRNNNFGSFKTTI---EGKTPQKLFNNYFNNTN 156 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP----------KRIGNFRSMILAPRF 265 +P + + ++ + ++ + K+ N+ P Sbjct: 157 GLAETPAGEYLFTSSSESAHQVQRKRYKGENNPDILGYNPKNNTFKQYTNYEGKDFNPSV 216 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 NG IS + + ++Y + + LT S D ++I+FE D Sbjct: 217 DKNGIIYFISDENNGEYNLYKI--EGGKKTALTQFDTSIKKPFVSADGTKIIFEKD---- 270 Query: 326 EQLYVMQSNGSDQKRI--------------SQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 QLY + + + + E + SP G +AF Sbjct: 271 YQLYTYDVASKKTRLLNVNLNTNKTLEKEQNFNVENNISYYDVSPDGKKMAFISRG---- 326 Query: 372 AIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + V +G + + + W R+L++++ +G S D G+ + L Sbjct: 327 ILFVSDVEGKFAQQVTDGKERAMEVKWLKDNRTLLYNQTYNGYQNWFTVSADGKGQPKQL 386 Query: 431 IN 432 Sbjct: 387 TQ 388 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 + DG + + + K Y + D +R+ + + Sbjct: 373 FTVSADGKGQPKQLTQDLRNNRSITLNNDLSKAVYLS--GRDEVRLLDLKDFNSTTIVKD 430 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + P FS N + L S +++ +DI+ +++ T LTNT +SP+ Sbjct: 431 EIWAFQNSRPSFSPNNEYVLFSAKRNFELDIFIYNIKKGQTLNLTNTGVSEEDPVWSPNG 490 Query: 314 SQIVFESDREG--------KEQLYVMQSN 334 I F SDR K +Y M + Sbjct: 491 KYIYFASDRTNPSYPLGMQKSNIYRMALD 519 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSG 401 Q+K P SP G A+ + G+ I + +G R+ D P SP G Sbjct: 20 QEKSYFLSSPSLSPDGKT-AYFSYDGD---IWRVDSNGGNASRITALDGEEINPRVSPDG 75 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + L FS + G LY + G + Sbjct: 76 KWLAFSSNQYG--NYDLYVMPSEGGTIKQLT 104 >gi|298481788|ref|ZP_06999978.1| MdsD protein [Bacteroides sp. D22] gi|298272010|gb|EFI13581.1| MdsD protein [Bacteroides sp. D22] Length = 1096 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 34/236 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + + R SP+ ++ + DI +V ++ S P +SS+GK+ Sbjct: 24 WMRDARISPDGSEIVFCY--KGDIYKVPAQ----GGTAVQLTTQTSYEANPVWSSDGKQI 77 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------- 321 + ++ DI+ + A RLT I ++++PD + F + Sbjct: 78 AFASDRNGNFDIFIMPADGGAARRLTYHSASEIPSTFTPDGKYVFFSASIQDPASSALFP 137 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGE 369 +LY + G +++ A + G + S Sbjct: 138 TGAMTELYKVPVAGGRTEQVL-GTPAELVCFDKT--GKNFLYQDRKGFEDEWRKHHTSSI 194 Query: 370 KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + L + P ++P G ++ F ++DG + +Y+ L+ Sbjct: 195 TRDIWLYNTQTGKHTNLTNRGGEDRNPVYAPDGNAVYFLSERDGGS-FNVYTFPLS 249 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 34/221 (15%) Query: 252 RIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + S + P + S +G + + D IY V Q +LT Sbjct: 11 VLSALSSYAITPLWMRDARISPDGSEIVFCYKGD----IYKVPAQGGTAVQLTTQTSYEA 66 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + +S D QI F SDR G +++M ++G +R++ AS ++P G + F+ Sbjct: 67 NPVWSSDGKQIAFASDRNGNFDIFIMPADGGAARRLTY-HSASEIPSTFTPDGKYVFFSA 125 Query: 366 F-----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD--- 411 +G + + G + ++ + + +G++ ++ +K Sbjct: 126 SIQDPASSALFPTGAMTELYKVPVAGGRTEQVLGTP-AELVCFDKTGKNFLYQDRKGFED 184 Query: 412 -------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ + G++ L N +P + Sbjct: 185 EWRKHHTSSITRDIWLYNTQTGKHTNLTNRGGEDRNPVYAP 225 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 98/310 (31%), Gaps = 81/310 (26%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM------- 259 +R P ++P+ V + + D VY + K + F++ Sbjct: 211 LTNRGGEDRNPVYAPDGNAVYFLSERDGGSFNVYTFPLSTPQEVKAVTTFKTHPVRFLSV 270 Query: 260 ----------------------------------------------ILAPRFSSNGKRAL 273 + S +GK+ Sbjct: 271 SDKGTLCYTYDGELYTQKSGARPEKVKVELVRDDGQQLATLKFSQGATSASVSPDGKQIA 330 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM-- 331 V+ D ++ T+++TNT + S++PD+ +V+ S+R G QLY Sbjct: 331 FIVRGD----VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKI 386 Query: 332 ---------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + +++ + K P +SP G +AF + + V+ + Sbjct: 387 SRKEDPNFPNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDRN---RLMVLNLKTKK 443 Query: 383 ERLLVEDSNLQ------APTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 R + + S WSP G+ L F + D S + + G T + Sbjct: 444 VRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRH-DPYSDVGIVSAQGGATTNLTNS 502 Query: 435 AYAS-DPQWV 443 Y S P+WV Sbjct: 503 GYISGAPRWV 512 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 32/255 (12%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 L+ +S V D DG + T Q SP+ +++A+ D Sbjct: 284 LYTQKSGARPEKVKVELVRD-DGQ--QLATLKFSQGATSASVSPDGKQIAFIVRGD---- 336 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 + + K+I N + A F+ + + + + ++ +Y+ + Sbjct: 337 --VFVTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGNWQLYTAKISRKEDPNF 394 Query: 298 TNTLFINIS------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD- 344 N I YSPD ++ F DR +L V+ ++++ Sbjct: 395 PNATLIEEEVLLPSKTVERAYPQYSPDGKELAFIEDR---NRLMVLNLKTKKVRQVTDGS 451 Query: 345 ---KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNLQ-APTW 397 FD WSP G + F + + +G++ G L + AP W Sbjct: 452 TWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDVGIVSAQGGATTNLTNSGYISGAPRW 511 Query: 398 SPSGRSLIFSRKKDG 412 G +++F ++ G Sbjct: 512 VLDGNAILFQTERYG 526 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 104/324 (32%), Gaps = 86/324 (26%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT P +S + +++A+A+ + + +++M Sbjct: 41 YKGDIYKVPAQGGTAVQLTTQTS-YEANPVWSSDGKQIAFASDRNGN-FDIFIMPAD-GG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATER- 296 A +R+ + + F+ +GK S ++Y V + TE+ Sbjct: 98 AARRLTYHSASEIPSTFTPDGKYVFFSASIQDPASSALFPTGAMTELYKVPVAGGRTEQV 157 Query: 297 ------------------------------------LTNT-----------------LFI 303 +T Sbjct: 158 LGTPAELVCFDKTGKNFLYQDRKGFEDEWRKHHTSSITRDIWLYNTQTGKHTNLTNRGGE 217 Query: 304 NISASYSPDSSQIVFESDREGKE-QLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDL- 360 + + Y+PD + + F S+R+G +Y + + K ++ K S +G L Sbjct: 218 DRNPVYAPDGNAVYFLSERDGGSFNVYTFPLSTPQEVKAVTTFKTHPVRFLSVSDKGTLC 277 Query: 361 -----IAFTKFSG---EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 +T+ SG EK + +++ DG Q L + + SP G+ + F + Sbjct: 278 YTYDGELYTQKSGARPEKVKVELVRDDGQQLATLKFSQGATSASVSPDGKQIAFIVR--- 334 Query: 413 DTGSKLYSIDLN-GRNETLINTPA 435 ++ + + + NTPA Sbjct: 335 ---GDVFVTSTDYATTKQITNTPA 355 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 22/220 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ ++PA ++ + + G+ Sbjct: 320 ASVSPDGKQIAFIVRGDVF-VTSTDYATTKQITNTPAKEAAVSFAPDNRTLVYASERTGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + +S +L L PS+ P++SP+ +++A+ Sbjct: 379 WQLYTAKISRKEDPNFPNATLI-------EEEVLLPSKTVERAYPQYSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRFSSNGKRA---LISVQKDEAMDI 284 ED R+ +++ + + +++ + +S +GK I + D D+ Sbjct: 429 -EDRNRLMVLNLKT-KKVRQVTDGSTWYNTGGGFDYEWSPDGKWFTLEFIGNRHDPYSDV 486 Query: 285 YSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 V Q AT LTN+ +I+ + + D + I+F+++R G Sbjct: 487 GIVSAQGGATTNLTNSGYISGAPRWVLDGNAILFQTERYG 526 >gi|209523154|ref|ZP_03271710.1| WD-40 repeat protein [Arthrospira maxima CS-328] gi|209496305|gb|EDZ96604.1| WD-40 repeat protein [Arthrospira maxima CS-328] Length = 829 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 54/325 (16%), Positives = 106/325 (32%), Gaps = 41/325 (12%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G V RLWDV +++ ++ S + Sbjct: 390 GQTLASGSGDNTV--RLWDVATGREL--RQLTGHTES---------------------VW 424 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + R+ +++ SG ++ + D ++ FSP+ Q +A + D+ Sbjct: 425 SVRLSPDGQTLASGSWDKTVRLWDVATGRELRQLTGHTSTVWSVSFSPDGQTLASGSSDN 484 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D R +++ + + FS +G+ S D + ++ V Sbjct: 485 ----TVRLWDVATGRELRQLTGHTDWVWSVSFSPDGQTLA-SGSGDNTVRLWDV-ATGRE 538 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +LT S S+SPD + S + + + R Sbjct: 539 LRQLTGHTSWVESVSFSPDGQTLASGSH---DNTVRLWDVATGRELRQLTGHTDWVLSVR 595 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 +SP G +A + V G R L ++ + +SP G++L Sbjct: 596 FSPDGQTLASGSYDNTVRLWDV--ATGRPLRQLTGHTDWVLSVRFSPDGQTLASGSD--- 650 Query: 413 DTGSKLYSIDLNGRNETLINTPAYA 437 D +L+ + GR + + Sbjct: 651 DNTVRLWDVP-TGRELRQLTGHTNS 674 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 104/308 (33%), Gaps = 39/308 (12%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + LWD+ + + ++ R + + S D +++ S Sbjct: 317 DIYLWDLSTGQLL--RQLTGHTRDVRSV--SFSPD-------------------GQTLAS 353 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G N++ + D ++ FSP+ Q +A + D+ V L D Sbjct: 354 GSGDNTVRLWDVATGRELRQLTGHTDWVWSVSFSPDGQTLASGSGDN----TVRLWDVAT 409 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 R +++ + + R S +G+ S D+ + ++ V +LT S Sbjct: 410 GRELRQLTGHTESVWSVRLSPDGQTLA-SGSWDKTVRLWDV-ATGRELRQLTGHTSTVWS 467 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 S+SPD + S + + + R + +SP G +A Sbjct: 468 VSFSPDGQTLASGSS---DNTVRLWDVATGRELRQLTGHTDWVWSVSFSPDGQTLASGSG 524 Query: 367 SGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 V G + R L S +++ ++SP G++L D +L+ + G Sbjct: 525 DNTVRLWDV--ATGRELRQLTGHTSWVESVSFSPDGQTLASGSH---DNTVRLWDV-ATG 578 Query: 426 RNETLINT 433 R + Sbjct: 579 RELRQLTG 586 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 16/247 (6%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + + D + + + FSP+ Q +A + D+ V L D Sbjct: 313 RSNKDIYLWDLSTGQLLRQLTGHTRDVRSVSFSPDGQTLASGSGDN----TVRLWDVATG 368 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 R +++ + + FS +G+ S D + ++ V +LT S Sbjct: 369 RELRQLTGHTDWVWSVSFSPDGQTLA-SGSGDNTVRLWDV-ATGRELRQLTGHTESVWSV 426 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 SPD + S + + + + R ++ + +SP G +A Sbjct: 427 RLSPDGQTLASGS---WDKTVRLWDVATGRELRQLTGHTSTVWSVSFSPDGQTLASGSSD 483 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 V G + R L ++ + ++SP G++L GD +L+ + GR Sbjct: 484 NTVRLWDV--ATGRELRQLTGHTDWVWSVSFSPDGQTLA---SGSGDNTVRLWDV-ATGR 537 Query: 427 NETLINT 433 + Sbjct: 538 ELRQLTG 544 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 102/306 (33%), Gaps = 38/306 (12%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 RLWDV +++ + HT D + G Sbjct: 559 QTLASGSHDNTVRLWDVATGREL-----------RQLTGHT--DWVLSVRFSPDG----- 600 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +++ SG N++ + D + RFSP+ Q +A + D+ Sbjct: 601 -----QTLASGSYDNTVRLWDVATGRPLRQLTGHTDWVLSVRFSPDGQTLASGSDDN--- 652 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 V L D R +++ + + + RFS +G+ S D + ++ V + Sbjct: 653 -TVRLWDVPTGRELRQLTGHTNSVNSVRFSPDGQTLA-SGSWDNTVRLWDV-ATGRELRQ 709 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 LT S S+SPD + S + + + R +S +S Sbjct: 710 LTGDTNWVRSVSFSPDGQTLASGSY---DNIVRLWDVATGRELRQLTGHTSSVNSVSFSS 766 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 G +A + V G + R L S + + ++SP G++L D Sbjct: 767 DGQTLASGSWDNTVRLWDV--ATGRELRQLTGHTSTVYSVSFSPDGQTLASGSD---DGV 821 Query: 416 SKLYSI 421 +L+ + Sbjct: 822 VRLWRV 827 Score = 99.7 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 17/217 (7%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 S + Q +A +YL D + +++ + + FS +G+ S Sbjct: 302 AVSADGQLLA-----LRSNKDIYLWDLSTGQLLRQLTGHTRDVRSVSFSPDGQTLA-SGS 355 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 D + ++ V +LT S S+SPD + S G + + Sbjct: 356 GDNTVRLWDV-ATGRELRQLTGHTDWVWSVSFSPDGQTLASGS---GDNTVRLWDVATGR 411 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPT 396 + R S + SP G +A + V G + R L S + + + Sbjct: 412 ELRQLTGHTESVWSVRLSPDGQTLASGSWDKTVRLWDV--ATGRELRQLTGHTSTVWSVS 469 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 +SP G++L D +L+ + GR + Sbjct: 470 FSPDGQTLA---SGSSDNTVRLWDV-ATGRELRQLTG 502 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 82/218 (37%), Gaps = 32/218 (14%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G D V RLWDV +++ ++ S + S D Sbjct: 642 GQTLASGSDDNTV--RLWDVPTGREL--RQLTGHTNSVNSV--RFSPD------------ 683 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +++ SG N++ + D + FSP+ Q +A +YD+ Sbjct: 684 -------GQTLASGSWDNTVRLWDVATGRELRQLTGDTNWVRSVSFSPDGQTLASGSYDN 736 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D R +++ S + + FSS+G+ S D + ++ V Sbjct: 737 ----IVRLWDVATGRELRQLTGHTSSVNSVSFSSDGQTLA-SGSWDNTVRLWDV-ATGRE 790 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 +LT S S+SPD + SD +G +L+ + Sbjct: 791 LRQLTGHTSTVYSVSFSPDGQTLASGSD-DGVVRLWRV 827 >gi|148262153|ref|YP_001228859.1| APHP domain-containing protein [Geobacter uraniireducens Rf4] gi|146395653|gb|ABQ24286.1| APHP domain protein [Geobacter uraniireducens Rf4] Length = 1951 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P ++ K+A YD R+ + D + P +S++G + + + Sbjct: 123 NPVWNAAGDKIAMQFYDSRGNDRIAVFDVHTVKMTPLTAGLYVYEQTPAWSADGTKVIFT 182 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 K+ +I+S DL S A ++T+ +F + S D S+I F +G L V+ Sbjct: 183 SNKNGYQEIWSKDLISGAETQVTHGVFA-YNPKPSQDGSRIAFF---DGST-LKVIDLQT 237 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-A 394 + + A+ WS G I+F G ++I Q + + Sbjct: 238 AVTTLV---GTANQNTHNWSADGKRISFRANKGTGYSIFSYDLMTGQTSEVAASVHYSII 294 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 P+WSP G ++F++ + G G L + L G + + + W Sbjct: 295 PSWSPDGSEILFAKAEPG-GGYALLASTLTGESRLVKKVTGNITYANW 341 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 105/285 (36%), Gaps = 16/285 (5%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y S+TG + V+ G + ++G + ++ FS + Sbjct: 28 YPSVTGIPAVVYDGLADVAGFTEPGAN----VFIFKEGEKVGEAVALASHLVESKSFSFS 83 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEA 281 +A++ ++ + + P +++ G + + Sbjct: 84 GSDIAFSLDGTSAAYTLFNNVYEKNLSTGVETLLAESARNPVWNAAGDKIAMQFYDSRGN 143 Query: 282 MDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 I D+ + LT L+ + ++S D ++++F S++ G ++++ + + Sbjct: 144 DRIAVFDVHTVKMTPLTAGLYVYEQTPAWSADGTKVIFTSNKNGYQEIWSKDLISGAETQ 203 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 ++ A ++P S G IAF F G + V+ + LV +N WS Sbjct: 204 VTHGVFA--YNPKPSQDGSRIAF--FDGST--LKVIDLQTA-VTTLVGTANQNTHNWSAD 256 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 G+ + F K TG ++S DL G+ + + Y+ P W Sbjct: 257 GKRISFRANKG--TGYSIFSYDLMTGQTSEVAASVHYSIIPSWSP 299 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 14/222 (6%) Query: 151 WRKIAHTISDDIYQSITGEKGD-FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 W I+ Y S ++ F+ + ++ + DG + + + Sbjct: 126 WNAAGDKIAMQFYDSRGNDRIAVFDVHTVKMTPLTAGLYVYEQTPAWSADGTKVIFTSNK 185 Query: 210 RDQILFEPR--FSPNQQKV-----AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + S + +V AY +D R+ D + +++ Sbjct: 186 NGYQEIWSKDLISGAETQVTHGVFAYNPKPSQDGSRIAFFDGSTLKVIDLQTAVTTLVGT 245 Query: 263 PR-----FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 +S++GKR K I+S DL + T + ++ +I S+SPD S+I+ Sbjct: 246 ANQNTHNWSADGKRISFRANKGTGYSIFSYDLMTGQTSEVAASVHYSIIPSWSPDGSEIL 305 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 F G + + + R+ + + W G Sbjct: 306 FAKAEPGGGYALLASTLTGES-RLVKKVTGNITYANWEKDGR 346 >gi|163849346|ref|YP_001637390.1| WD40 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222527342|ref|YP_002571813.1| WD40 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163670635|gb|ABY37001.1| WD40 domain protein beta Propeller [Chloroflexus aurantiacus J-10-fl] gi|222451221|gb|ACM55487.1| WD40 domain protein beta Propeller [Chloroflexus sp. Y-400-fl] Length = 620 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 105/325 (32%), Gaps = 45/325 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR--FS 220 Y + + + S + L DG R + + + F R + Sbjct: 294 YPHLGAPWVAPDPATPLIYASNIDTGSHWELYRATFDGGGRRLTFNNGETVAFSWRRSWD 353 Query: 221 PNQQKVAYATYDDEDILR-VYLMDTRIDRAPKR------------------------IGN 255 PNQ + + + R +YL++ A ++ + Sbjct: 354 PNQHFLVVDSRRNSPQYRQIYLLNAVAADAGEQAAGASVVRISYSNADGNFPPSDNDSSS 413 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE----RLT--NTLFINISASY 309 S +G ++ +Y L + +T + S ++ Sbjct: 414 IPGSEYNASVSPDGTLLAFVSERQGIPQLYLRRLNVSPLRGYASPITAYDRPCNVESPTW 473 Query: 310 SPDSSQIVFESDREGKEQLY-----------VMQSNGSDQKRISQDKEASYFDPVWSPQG 358 SPD + + ++ EG ++Y + S + R + A+ SP G Sbjct: 474 SPDGRYLFWVTNCEGNFEIYRATIVFYYIDDLFASISLNNIRNLSNNAANDRFARISPDG 533 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 IAF + I VM DGS R L + + +PTWS + + L F+ +DGD Sbjct: 534 RTIAFASDRDGNWEIYVMNSDGSNVRRLTNNAATDDSPTWSLTNQQLAFASDRDGDFEIY 593 Query: 418 LYSIDLNGRNETLINTPAYASDPQW 442 + ++ + + A P W Sbjct: 594 ILNVSDGAIVQQVTQNTAQDRWPLW 618 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 80/203 (39%), Gaps = 12/203 (5%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + D + + L V G R + P +SP+ Sbjct: 418 EYNASVSPDGTLLAFVSERQGIPQLYLRRLNVSPLRGYASPITAYDRPCNVESPTWSPDG 477 Query: 224 QKVAYATYDDED-------ILRVYLMDTRID---RAPKRIGNFRSMILAPRFSSNGKRAL 273 + + + T + + I+ Y+ D + + N + R S +G+ Sbjct: 478 RYLFWVTNCEGNFEIYRATIVFYYIDDLFASISLNNIRNLSNNAANDRFARISPDGRTIA 537 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + +D +IY ++ + RLTN + S ++S + Q+ F SDR+G ++Y++ Sbjct: 538 FASDRDGNWEIYVMNSDGSNVRRLTNNAATDDSPTWSLTNQQLAFASDRDGDFEIYILNV 597 Query: 334 -NGSDQKRISQDKEASYFDPVWS 355 +G+ ++++Q+ A P+W+ Sbjct: 598 SDGAIVQQVTQNT-AQDRWPLWA 619 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 52/294 (17%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G ++ R L P +P+ + + L D +R+ Sbjct: 283 GNVGQHYFQWRYPHLGAPWVAPDPATPLIYASNIDTGSHWELYRATFDGGGRRLTFNNGE 342 Query: 260 ILAPRFS----SNGKRALISVQKD--EAMDIYSVD---------LQSNATERLTNT---- 300 +A + N ++ +++ + IY ++ + R++ + Sbjct: 343 TVAFSWRRSWDPNQHFLVVDSRRNSPQYRQIYLLNAVAADAGEQAAGASVVRISYSNADG 402 Query: 301 ------------LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR-----ISQ 343 +AS SPD + + F S+R+G QLY+ + N S + + Sbjct: 403 NFPPSDNDSSSIPGSEYNASVSPDGTLLAFVSERQGIPQLYLRRLNVSPLRGYASPITAY 462 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV------------MKKDGSQERLLVED-S 390 D+ + P WSP G + + F I + R L + + Sbjct: 463 DRPCNVESPTWSPDGRYLFWVTNCEGNFEIYRATIVFYYIDDLFASISLNNIRNLSNNAA 522 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD-PQWV 443 N + SP GR++ F+ +DG+ ++Y ++ +G N + A D P W Sbjct: 523 NDRFARISPDGRTIAFASDRDGNW--EIYVMNSDGSNVRRLTNNAATDDSPTWS 574 >gi|317128020|ref|YP_004094302.1| WD40-like beta Propeller containing protein [Bacillus cellulosilyticus DSM 2522] gi|315472968|gb|ADU29571.1| WD40-like beta Propeller containing protein [Bacillus cellulosilyticus DSM 2522] Length = 666 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 96/246 (39%), Gaps = 62/246 (25%) Query: 260 ILAPRFSSNGKRALISV-----QKDEAM-DIYSVDLQSNATERLTNTLF------INISA 307 + P+ S N +A + +KD +IY DL+ + T+ ++ + Sbjct: 17 VGDPQVSPNKDKAAYVLTHVDKEKDGYYSNIYVTDLKGPG-RQFTSHYAKEDKLVVDAAP 75 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF- 366 +SPD S + F S+R GK Q+Y++ ++G + +++ K+ D WSP G + T Sbjct: 76 KWSPDGSSLAFRSNRTGKNQVYLLHTDGGEAIQLTDVKQG-VGDYDWSPDGSKLVLTIRG 134 Query: 367 -----------------------------------SGEKFAIGVMKKDGSQERLLVE-DS 390 + ++ + + + + + E D Sbjct: 135 EFKLSTDKDEEKKEEKSDVKVITRLRYKGDGAGIYNDDRTHVYLFDVNTKEYTKVTEGDH 194 Query: 391 NLQAPTWSPSGRSLIF----SRKKDGDTGSKLYSIDLNGRNETL-------INTPAYASD 439 + P +SP G SLI+ + K+ ++ D+ + E L I P+++ D Sbjct: 195 DFGQPRFSPDGASLIYIGTKAEDKEWGYLPAIWKYDIEKKEEALFYQGNGYIYAPSFSPD 254 Query: 440 PQWVGF 445 +W+ F Sbjct: 255 GKWLAF 260 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/308 (12%), Positives = 102/308 (33%), Gaps = 72/308 (23%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQ----ILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +++ V D G ++ + + + P++SP+ +A+ + +VYL Sbjct: 40 KDGYYSNIYVTDLKGPGRQFTSHYAKEDKLVVDAAPKWSPDGSSLAFRSNRTGKN-QVYL 98 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ------------------------ 277 + T A + + + + + +S +G + +++++ Sbjct: 99 LHTDGGEAIQ-LTDVKQGVGDYDWSPDGSKLVLTIRGEFKLSTDKDEEKKEEKSDVKVIT 157 Query: 278 ------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES----- 320 D+ +Y D+ + ++T +SPD + +++ Sbjct: 158 RLRYKGDGAGIYNDDRTHVYLFDVNTKEYTKVTEGDHDFGQPRFSPDGASLIYIGTKAED 217 Query: 321 -DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----KFSGEKFAIG 374 + ++ ++ + + P +SP G +AF + S + Sbjct: 218 KEWGYLPAIWKYDIEKKEEA-LFYQGNGYIYAPSFSPDGKWLAFAGHNRGERSQGNANVL 276 Query: 375 VMKKDGSQERLLVEDSNLQAP----------------TWSPSGRSLIFSRKKDGDTGSKL 418 ++ + + + L E+ + TW + + F GD +L Sbjct: 277 LLSYETGELKNLTENFDYTVGNLVGVDAKYDTGGGNLTWDATSSHIYFIATVGGD--CQL 334 Query: 419 YSIDLNGR 426 + ++L G Sbjct: 335 FRVNLKGE 342 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 24/208 (11%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR----IGNFRSMI 260 D +PRFSP+ + Y ED YL K+ I Sbjct: 187 TKVTEGDHDFGQPRFSPDGASLIYIGTKAEDKEWGYLPAIWKYDIEKKEEALFYQGNGYI 246 Query: 261 LAPRFSSNGKRALISV-----QKDEAMDIYSVDLQSNATERLTNTLFI------------ 303 AP FS +GK + + ++ + ++ + LT Sbjct: 247 YAPSFSPDGKWLAFAGHNRGERSQGNANVLLLSYETGELKNLTENFDYTVGNLVGVDAKY 306 Query: 304 NISA---SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + ++ SS I F + G QL+ + G +S + + + + Sbjct: 307 DTGGGNLTWDATSSHIYFIATVGGDCQLFRVNLKGEVSDSLSPSVASVTSYDIVNDDKAV 366 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + D L Sbjct: 367 LVLATPHSTGDVVTQDLTDVKSVVKLTN 394 >gi|323343852|ref|ZP_08084079.1| tricorn family protease MdsD [Prevotella oralis ATCC 33269] gi|323095671|gb|EFZ38245.1| tricorn family protease MdsD [Prevotella oralis ATCC 33269] Length = 1102 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 28/201 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G S + D I+++ +Q +LT+ +SPD +I F S RE Sbjct: 63 SISPDGTTIAFSYKGD----IFTIPVQGGNARQLTSNAAYESYPIWSPDGERIAFVSTRE 118 Query: 324 GKEQLYVMQSNGSDQKRIS-----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +YVM +G + KR++ +D E F+ P I F + Sbjct: 119 GSYDIYVMSKDGGEPKRLTTDSGNEIPMTWRDNEHILFETTGMPTAKSIYFASSQFPQ-- 176 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDL 423 + GS+ R LV +++ + + +G L F + ++ ++ Sbjct: 177 VYETDVKGSRPR-LVSAVTMESMSINKNGDILYHDKKGYEDEFRKHHRSPITRDIW-LNK 234 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG+ L +P W Sbjct: 235 NGKFTKLTAFNGEDRNPVWAA 255 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 110/304 (36%), Gaps = 40/304 (13%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 + ++ E G FN V V K L + +RYLT + + L F Sbjct: 258 QSFYYLSEEDGTFN-----VYRRNVESADKTQLTRFKDN--PVRYLTAAENGTLC---FC 307 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQKD 279 + + Y + + +V + T I ++ + S +GK + D Sbjct: 308 YDGE--IYTLREGGEPTKVNINITADKNDADLIRQIKTNGATEIKVSPSGKEIAFVLHGD 365 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 +Y + T+++T+T S ++PD I + S+R G Q+Y +K Sbjct: 366 ----VYVTSIDYRTTKQITDTPEQERSIDFAPDGRSIAYASERNGLWQIYQTTIKNKGEK 421 Query: 340 RISQDK----------EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + +++ F P++SP G IAF + + + R L++ Sbjct: 422 QFTYATDLEETQLVKSDSTSFQPLYSPDGKSIAFLENRNT---LRAVDLKSKTVRTLMDG 478 Query: 390 SNLQAPT-------WSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASD 439 + + WSP R L+ S G +K L S NG L + + Sbjct: 479 KYNYSYSDGDVWCTWSPDSRWLLASYIGYGGWNNKDIALVSASGNGEIYNLTESGYNDGN 538 Query: 440 PQWV 443 +WV Sbjct: 539 GKWV 542 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 87/246 (35%), Gaps = 37/246 (15%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + SP+ +A++ DI + + +++ + + P +S +G Sbjct: 55 HPLWMRYSSISPDGTTIAFSY--KGDIFTIPVQ----GGNARQLTSNAAYESYPIWSPDG 108 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY------------SPDSSQIV 317 +R ++ + DIY + +RLT I ++ P + I Sbjct: 109 ERIAFVSTREGSYDIYVMSKDGGEPKRLTTDSGNEIPMTWRDNEHILFETTGMPTAKSIY 168 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----------TKF 366 F S + Q+Y GS + +S S + GD++ Sbjct: 169 FASSQ--FPQVYETDVKGSRPRLVSAVTMESM---SINKNGDILYHDKKGYEDEFRKHHR 223 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 S I + K+G +L + + P W+ G+S + ++DG +Y ++ Sbjct: 224 SPITRDIWL-NKNGKFTKLTAFNGEDRNPVWAADGQSFYYLSEEDGTF--NVYRRNVESA 280 Query: 427 NETLIN 432 ++T + Sbjct: 281 DKTQLT 286 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 40/376 (10%), Positives = 102/376 (27%), Gaps = 128/376 (34%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + ++ K + + G N R LT S P +SP+ +++A+ + + Sbjct: 64 ISPDGTTIAFSYKGDIFTIPVQGGNARQLT-SNAAYESYPIWSPDGERIAFVSTREGS-Y 121 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFS------------SNGKRALISVQKDEAMDIY 285 +Y+M ++ PKR+ + + K + + +Y Sbjct: 122 DIYVM-SKDGGEPKRLTTDSGNEIPMTWRDNEHILFETTGMPTAKSIYFASSQ--FPQVY 178 Query: 286 SVDLQS---------------------------------------------------NAT 294 D++ Sbjct: 179 ETDVKGSRPRLVSAVTMESMSINKNGDILYHDKKGYEDEFRKHHRSPITRDIWLNKNGKF 238 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ----------- 343 +LT + + ++ D + S+ +G +Y +D+ ++++ Sbjct: 239 TKLTAFNGEDRNPVWAADGQSFYYLSEEDGTFNVYRRNVESADKTQLTRFKDNPVRYLTA 298 Query: 344 -------------------DKEASYFDPVWSPQ-----------------------GDLI 361 E + + + G I Sbjct: 299 AENGTLCFCYDGEIYTLREGGEPTKVNINITADKNDADLIRQIKTNGATEIKVSPSGKEI 358 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYS 420 AF + V D + + + + + ++P GRS+ ++ +++G ++Y Sbjct: 359 AFVLHGD----VYVTSIDYRTTKQITDTPEQERSIDFAPDGRSIAYASERNGLW--QIYQ 412 Query: 421 IDLNGRNETLINTPAY 436 + + E Sbjct: 413 TTIKNKGEKQFTYATD 428 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 101/306 (33%), Gaps = 34/306 (11%) Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 K+ +P R I + G + ++ + G + + D Sbjct: 377 KQITDTPEQERSIDFAPDGRSIAYASERNGLWQ---IYQTTIKNKGEKQFTYAT---DLE 430 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMI 260 + + D F+P +SP+ + +A+ + + + R K ++ Sbjct: 431 ETQLVK--SDSTSFQPLYSPDGKSIAFLENRNTLRAVDLKSKTVRTLMDGKYNYSYSDGD 488 Query: 261 LAPRFSSNGKRALISVQKDEAM---DIYSVDLQS-NATERLTNTLFINISASYSPDSSQI 316 + +S + + L S DI V LT + + + + + + Sbjct: 489 VWCTWSPDSRWLLASYIGYGGWNNKDIALVSASGNGEIYNLTESGYNDGNGKWVLGGKAM 548 Query: 317 VFESDREGK---------EQLYVM--QSNGSDQKRISQDKEASYFDPVWSPQGDLI---- 361 +FESDR G +Y+M + ++ ++S++++ Y + Sbjct: 549 IFESDRAGYRSHGSWGSESDMYIMFFDLDAYERFKMSKEEKTLYDEAKKEEAAAKEQKTV 608 Query: 362 -AFTKFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 K +K I D RL V S L SP G +L + +G G Sbjct: 609 DVTVKKKPKKEEILKFDLDNCRDRVLRLTVNSSRLGDALLSPGGDTLYYQAAFEG--GYD 666 Query: 418 LYSIDL 423 L+ DL Sbjct: 667 LWKHDL 672 >gi|116201935|ref|XP_001226779.1| hypothetical protein CHGG_08852 [Chaetomium globosum CBS 148.51] gi|88177370|gb|EAQ84838.1| hypothetical protein CHGG_08852 [Chaetomium globosum CBS 148.51] Length = 1011 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 19/252 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +V SG ++ + D + ++ FSP+ + VA + D + L Sbjct: 442 RTVASGSADETIRLWDAATGAHQQTLKGHSSAVYAVAFSPDGRTVATGSDDS----TIRL 497 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + S + A FS +G+ + D+ + ++ D + A ++ L Sbjct: 498 WDAATGAHQQTLEGHSSGVSAVAFSPDGRTVA-TGSDDDTIRLW--DAATGAHQQTLKGH 554 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + ++SPD + S G + + + ++ + + + +SP G Sbjct: 555 SNWVFAVAFSPDGRTVASGS---GDSTIRLWDAATGAHQQTLKGHSGAVYAVAFSPDGRT 611 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A I + + + + A +SP GR++ D +L Sbjct: 612 VA---TGSGDSTIRLWDAATGAHQQTLKGHSGAVYAVAFSPDGRTVATGSYDD---TIRL 665 Query: 419 YSIDLNGRNETL 430 + +TL Sbjct: 666 WDAATGAHQQTL 677 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 20/238 (8%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 + + FSP+ + VA + D+ + L D + + S + A Sbjct: 421 HQQTLEGHSSSVRAVAFSPDGRTVASGSADE----TIRLWDAATGAHQQTLKGHSSAVYA 476 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESD 321 FS +G+ + D + ++ D + A ++ +SA ++SPD + SD Sbjct: 477 VAFSPDGRTVA-TGSDDSTIRLW--DAATGAHQQTLEGHSSGVSAVAFSPDGRTVATGSD 533 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + + + + ++ + F +SP G +A I + Sbjct: 534 ---DDTIRLWDAATGAHQQTLKGHSNWVFAVAFSPDGRTVA---SGSGDSTIRLWDAATG 587 Query: 382 QERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 + + + A +SP GR++ GD+ +L+ G ++ + + A Sbjct: 588 AHQQTLKGHSGAVYAVAFSPDGRTVA---TGSGDSTIRLWDA-ATGAHQQTLKGHSGA 641 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 39/285 (13%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 RLWD H S +Y G Sbjct: 442 RTVASGSADETIRLWDAATG-----------AHQQTLKGH--SSAVYAVAFSPDG----- 483 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +V +G +++ + D + + FSP+ + VA + DD Sbjct: 484 -----RTVATGSDDSTIRLWDAATGAHQQTLEGHSSGVSAVAFSPDGRTVATGSDDD--- 535 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 + L D + + + + A FS +G+ S D + ++ D + A ++ Sbjct: 536 -TIRLWDAATGAHQQTLKGHSNWVFAVAFSPDGRTVA-SGSGDSTIRLW--DAATGAHQQ 591 Query: 297 -LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 L + ++SPD + S G + + + ++ + + + +S Sbjct: 592 TLKGHSGAVYAVAFSPDGRTVATGS---GDSTIRLWDAATGAHQQTLKGHSGAVYAVAFS 648 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWS 398 P G +A + I + + + S + A +S Sbjct: 649 PDGRTVATGSYDDT---IRLWDAATGAHQQTLKGHSSAVYAVAFS 690 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 75/209 (35%), Gaps = 16/209 (7%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + + + + + + + S + A FS +G+ S DE + ++ D + Sbjct: 404 EAKKFVLGHGIRAGWGAHQQTLEGHSSSVRAVAFSPDGRTVA-SGSADETIRLW--DAAT 460 Query: 292 NATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 A ++ L + ++SPD + SD + + + ++ + + Sbjct: 461 GAHQQTLKGHSSAVYAVAFSPDGRTVATGSD---DSTIRLWDAATGAHQQTLEGHSSGVS 517 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSR 408 +SP G +A I + + ++ + A +SP GR++ Sbjct: 518 AVAFSPDGRTVATGSDDDT---IRLWDAATGAHQQTLKGHSNWVFAVAFSPDGRTVA--- 571 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYA 437 GD+ +L+ G ++ + + A Sbjct: 572 SGSGDSTIRLWDA-ATGAHQQTLKGHSGA 599 >gi|332993975|gb|AEF04030.1| acylaminoacyl-peptidase [Alteromonas sp. SN2] Length = 692 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 105/258 (40%), Gaps = 20/258 (7%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S +++ ++ +L + DG+ S + F P FSP+ K+AY + + ++VY Sbjct: 63 SMDIMTDSMRRNLWTIALDGS-AHLPILSDSKNHFNPVFSPDGAKMAYLSSKEGK-VQVY 120 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERLTN 299 L D + R+ + FS +GK ++ +A ++++D + + Sbjct: 121 LKDLASNS-TTRVTDVAMRPSGMSFSPDGKYLAFAMFTPTKAKPLFNLDFKPKGAKWAET 179 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 +I+ ++ D + R G Q+YV+ + G ++I+ + WS G Sbjct: 180 PQYID-QTNFQRDGMGM----KRPGNMQIYVVPTIGGTPRQITSGEHDHAGTIAWSDNGQ 234 Query: 360 LIAFTKFSGE-------KFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD 411 I + + + + + S+ L + ++P SP+G + F +D Sbjct: 235 QIIISANTSDEADFDMLNSDLFSIDVKTSKVTRLTDMSGPERSPHLSPNGNKIAFVGNED 294 Query: 412 GDTGSK---LYSIDLNGR 426 ++ LY ++ +G Sbjct: 295 NGKSNQLSHLYVMNSDGT 312 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 84/231 (36%), Gaps = 22/231 (9%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-------A 281 +++Y++ T + +S NG++ +IS + Sbjct: 193 MGMKRPGNMQIYVVPTIGGTPRQITSGEHDHAGTIAWSDNGQQIIISANTSDEADFDMLN 252 Query: 282 MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-----EQLYVMQSNGS 336 D++S+D++++ RLT+ S SP+ ++I F + + LYVM S+G+ Sbjct: 253 SDLFSIDVKTSKVTRLTDMSGPERSPHLSPNGNKIAFVGNEDNGKSNQLSHLYVMNSDGT 312 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--- 393 + ++ + + S W+ G + F+ K ++ + G + Sbjct: 313 GIENLTSELDRSVGAIKWADNGKGVYFSYDDMGKKSVAYVSLSGKISTKTSDLGGTSLGR 372 Query: 394 -----APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 +P G + + GD + L + G+ + L + D Sbjct: 373 PYTSGDYDVTPKGSVVYTASM--GDRPADLAIVTSKGKVKQLTDLNGDVFD 421 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 305 ISASYSPDSSQIVFESDR------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + +PD +V+E + L+ + +GS I D + ++F+PV+SP G Sbjct: 46 TNPVVTPDGKHVVYERRSMDIMTDSMRRNLWTIALDGSAHLPILSDSK-NHFNPVFSPDG 104 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFS 407 +A+ K + + + + + + ++SP G+ L F+ Sbjct: 105 AKMAYLSSKEGKVQVYLKDLASNSTTRVTDVAMRPSGMSFSPDGKYLAFA 154 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 16/110 (14%) Query: 350 FDPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGR 402 +PV +P G + + + S + + + DGS +L + N P +SP G Sbjct: 46 TNPVVTPDGKHVVYERRSMDIMTDSMRRNLWTIALDGSAHLPILSDSKNHFNPVFSPDGA 105 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-------YASDPQWVGF 445 + + K+G ++Y DL + T + A ++ D +++ F Sbjct: 106 KMAYLSSKEGKV--QVYLKDLASNSTTRVTDVAMRPSGMSFSPDGKYLAF 153 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 29/210 (13%) Query: 102 DWNSLGAQVLVTGRVIKEGK-DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISD 160 W+ G Q++++ E D L + DVK K + + + H + Sbjct: 228 AWSDNGQQIIISANTSDEADFDMLNSDLFSIDVKTSKV----TRLTDMSGPERSPHLSPN 283 Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNS-LCVMDRDGANIRYLTPSRDQILFEPRF 219 ++I FV + S L VM+ DG I LT D+ + ++ Sbjct: 284 -------------GNKIAFVGNEDNGKSNQLSHLYVMNSDGTGIENLTSELDRSVGAIKW 330 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA-P------RFSSNGKRA 272 + N + V ++ D Y+ + + + + L P + G Sbjct: 331 ADNGKGVYFSYDDMGKKSVAYV--SLSGKISTKTSDLGGTSLGRPYTSGDYDVTPKG-SV 387 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + ++ ++LT+ Sbjct: 388 VYTASMGDRPADLAIVTSKGKVKQLTDLNG 417 >gi|91216538|ref|ZP_01253504.1| Acylaminoacyl-peptidase [Psychroflexus torquis ATCC 700755] gi|91185332|gb|EAS71709.1| Acylaminoacyl-peptidase [Psychroflexus torquis ATCC 700755] Length = 705 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 96/284 (33%), Gaps = 58/284 (20%) Query: 212 QILFEPRFSPNQQKVAYATYDDE---DILRVYLMDTRIDRAPK-RIGNFRSMILAPRFSS 267 Q++ P SP+ + + Y + + D V L D I + +S Sbjct: 63 QMVGNPEISPDGETIIYERHQFDVMTDSRLVNLWQISFDGETHYPITSGTKYHGNVNWSP 122 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------ 321 G + + +D + +Y ++S T LTN + S+SPD +Q++F Sbjct: 123 QGDKFAFTSNQDGSNQLYVYWVESKTTAALTNFTESPSNISWSPDGTQLLFSKFVPESSK 182 Query: 322 -----------------------------------REGKEQLYVMQSNGSDQKRISQDKE 346 ++G ++V+ + G ++++ Sbjct: 183 AIQPKIPSPPNGAEWEKEADVIDKAVYRRDGGGYVQDGYSHIFVISAEGGTARQLTS-GS 241 Query: 347 ASYFDPVWSPQGDLIAFT-------KFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWS 398 + W+P G I +T + I + + L +P S Sbjct: 242 HQFGSSSWTPDGKHILYTVNKSEDAEVDPNNEQIFEQHIETGVSKQLTSTRGPFYSPKVS 301 Query: 399 PSGRSLIFSRKKD---GDTGSKLYSIDLNGRNETLINTPAYASD 439 P G+ + ++ D G +KLY + +G +++ +A D Sbjct: 302 PDGKHIAYTGFDDKFVGYQLTKLYLMSRDGAELEILS-KGFAQD 344 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 112/305 (36%), Gaps = 63/305 (20%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-YDDEDILRVY 240 V++ +L + DG Y S + +SP K A+ + D + L VY Sbjct: 84 FDVMTDSRLVNLWQISFDGE-THYPITSGTKYHGNVNWSPQGDKFAFTSNQDGSNQLYVY 142 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS------------------------- 275 ++++ A S I +S +G + L S Sbjct: 143 WVESKTTAALTNFTESPSNI---SWSPDGTQLLFSKFVPESSKAIQPKIPSPPNGAEWEK 199 Query: 276 ----------------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +D I+ + + +LT+ S+S++PD I++ Sbjct: 200 EADVIDKAVYRRDGGGYVQDGYSHIFVISAEGGTARQLTSGSHQFGSSSWTPDGKHILYT 259 Query: 320 SDRE-------GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF- 371 ++ EQ++ K+++ ++ P SP G IA+T F + Sbjct: 260 VNKSEDAEVDPNNEQIFEQHIETGVSKQLTS-TRGPFYSPKVSPDGKHIAYTGFDDKFVG 318 Query: 372 ----AIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + +M +DG++ +L + ++ + TW+ +S+ F ++G SK+ I+L G Sbjct: 319 YQLTKLYLMSRDGAELEILSKGFAQDISSITWAKDAKSIYFRFDEEG--NSKVGQINLKG 376 Query: 426 RNETL 430 T+ Sbjct: 377 EVSTV 381 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 21/215 (9%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL------RVYLMDTRI 246 + V+ +G R LT Q ++P+ + + Y ED +++ Sbjct: 224 IFVISAEGGTARQLTSGSHQF-GSSSWTPDGKHILYTVNKSEDAEVDPNNEQIFEQHIET 282 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-----EAMDIYSVDLQSNATERLTNTL 301 K++ + R +P+ S +GK + D + +Y + E L+ Sbjct: 283 G-VSKQLTSTRGPFYSPKVSPDGKHIAYTGFDDKFVGYQLTKLYLMSRDGAELEILSKGF 341 Query: 302 FINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS----YFDPVWS- 355 +IS+ +++ D+ I F D EG ++ + G S Y +S Sbjct: 342 AQDISSITWAKDAKSIYFRFDEEGNSKVGQINLKGEVSTVAENLGSPSIGRPYGGGTYSV 401 Query: 356 PQGDLIAFTKF-SGEKFAIGVMK-KDGSQERLLVE 388 +AF+ + + V+ K + + L Sbjct: 402 SDKGKLAFSYVTTSTPAELAVVSQKSTRETKRLTN 436 Score = 36.5 bits (83), Expect = 9.2, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 162 IYQSITGEKGDFNSRILFVSESVVS---------GIIKNSLCVMDRDGANIRYLTPSRDQ 212 + + +T +G F S + ++ G L +M RDGA + L+ Q Sbjct: 284 VSKQLTSTRGPFYSPKVSPDGKHIAYTGFDDKFVGYQLTKLYLMSRDGAELEILSKGFAQ 343 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP------RFS 266 + ++ + + + Y +D+E +V ++ + + + I P S Sbjct: 344 DISSITWAKDAKSI-YFRFDEEGNSKVGQINLKGEVSTVAENLGSPSIGRPYGGGTYSVS 402 Query: 267 SNGKRALISVQKDEAMDIYSVD-LQSNATERLTNTLFI 303 GK A V ++ V + T+RLTN Sbjct: 403 DKGKLAFSYVTTSTPAELAVVSQKSTRETKRLTNLNAN 440 >gi|262194673|ref|YP_003265882.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262078020|gb|ACY13989.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1626 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 101/264 (38%), Gaps = 17/264 (6%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +VS ++ V DG + + D + RFSP+ ++ A++D + L Sbjct: 1093 RIVSASQDKTVRVWRADGTDEPLVLYGHDDAVSSVRFSPDGARIVSASWDT----TLRLW 1148 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 ++ P + + RFS +G + S D M ++ D + Sbjct: 1149 NSDGSGHPHVFPGHEDQVTSARFSPDGAHIV-SASHDGTMRLWRSD-GTGEPVVFRGHDS 1206 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 SA +SPD ++ S + + V +++GS ++ + + SP G Sbjct: 1207 GLTSARFSPDGVHLISAST---DQSVRVWRADGSRPPQVLRGHDDVVESVALSPDGGYFV 1263 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYS 420 + G I + GS + LL++ + + ++SP G L+ S D +++S Sbjct: 1264 SASWDGS---IRMWPLAGSGQPLLLDGHTREALSASFSPDGTRLVSSSW---DKDLRVHS 1317 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 + +G+ L A ++ Sbjct: 1318 ANGSGQPLVLRGHEAAVWHAEFSP 1341 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 10/238 (4%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E +++ E +VS I S+ + + DG+ + + + FSP+ +V Sbjct: 1330 HEAAVWHAEFSPSGERIVSASIDKSMRIWNADGSGQPLILRGHEDRVSSAGFSPDGDRVV 1389 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 A+YD V + + + + + + S +G R L S D+++ I+++ Sbjct: 1390 SASYDK----TVRVWNADGSGEAMVLRGHYDRVTSAQVSPDGARVL-SASWDKSIRIWNI 1444 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D + + SA +SPD +IV S + + V +++GS+ + + E Sbjct: 1445 DGSGRPAILRGHHDAV-WSARFSPDGERIVSASF---DKSVRVWRTDGSEPPIVLRGHED 1500 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 +SP G I + + I G L D+ + +SP G + Sbjct: 1501 WVMWAEFSPDGRYIV-SASKDKTIRIWRSDGSGEPVVLRGHDAWVNKARFSPDGGRIA 1557 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 21/279 (7%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 + G ++R ++S S+ V DG+ + D ++ SP+ Sbjct: 1204 HDSGLTSARFSPDGVHLISASTDQSVRVWRADGSRPPQVLRGHDDVVESVALSPDGGYFV 1263 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 A++D + + P + L+ FS +G R + S D+ + ++S Sbjct: 1264 SASWDG----SIRMWPLAGSGQPLLLDGHTREALSASFSPDGTRLV-SSSWDKDLRVHSA 1318 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + S L A +SP +IV S + + + ++GS Q I + E Sbjct: 1319 N-GSGQPLVLRGHEAAVWHAEFSPSGERIVSASI---DKSMRIWNADGSGQPLILRGHED 1374 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLI 405 +SP GD + + + V DGS E +++ + + SP G ++ Sbjct: 1375 RVSSAGFSPDGDRVVSASYDKT---VRVWNADGSGEAMVLRGHYDRVTSAQVSPDGARVL 1431 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + D ++++ID +GR L D W Sbjct: 1432 SASW---DKSIRIWNIDGSGRPAIL----RGHHDAVWSA 1463 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 102/266 (38%), Gaps = 19/266 (7%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + S G ++ + ++ D + + +F +SP+ ++ A++D V Sbjct: 967 TASPPPGAVQEAKRLLHSD--IALRVFLGHEDAVFSVSYSPDGSRIVSASHDK----TVR 1020 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + + + R + + FS +G + S +D + ++ D + E L Sbjct: 1021 VWNADGSGEAIVLRGHRGAVSSANFSPDGAYIV-SASEDSTIRVWRAD-GTGQAEILRGH 1078 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SA++SPD S+IV S + + V +++G+D+ + + + +SP G Sbjct: 1079 EGAVYSANFSPDGSRIVSASQ---DKTVRVWRADGTDEPLVLYGHDDAVSSVRFSPDGAR 1135 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKL 418 I + + + DGS + Q + +SP G ++ S DG +L Sbjct: 1136 IVSASWDTT---LRLWNSDGSGHPHVFPGHEDQVTSARFSPDGAHIV-SASHDGTM--RL 1189 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + D G + + ++ Sbjct: 1190 WRSDGTGEPVVFRGHDSGLTSARFSP 1215 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 13/265 (4%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 + E F+ +VS ++ V + DG+ + + FSP+ Sbjct: 992 LGHEDAVFSVSYSPDGSRIVSASHDKTVRVWNADGSGEAIVLRGHRGAVSSANFSPDGAY 1051 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 + A+ D + + + + + + FS +G R + S +D+ + ++ Sbjct: 1052 IVSASEDS----TIRVWRADGTGQAEILRGHEGAVYSANFSPDGSRIV-SASQDKTVRVW 1106 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D ++ L S +SPD ++IV S L + S+GS + Sbjct: 1107 RAD-GTDEPLVLYGHDDAVSSVRFSPDGARIVSAS---WDTTLRLWNSDGSGHPHVFPGH 1162 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 E +SP G I G + G DS L + +SP G LI Sbjct: 1163 EDQVTSARFSPDGAHIVSASHDGT-MRLWRSDGTGEPVVFRGHDSGLTSARFSPDGVHLI 1221 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETL 430 + D +++ D + + L Sbjct: 1222 SAST---DQSVRVWRADGSRPPQVL 1243 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 100/262 (38%), Gaps = 17/262 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 VS +++ V DG + + ++ FSP+ ++ A+ D V + Sbjct: 1053 VSASEDSTIRVWRADGTGQAEILRGHEGAVYSANFSPDGSRIVSASQDK----TVRVWRA 1108 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 P + + + RFS +G R + S D + +++ D S Sbjct: 1109 DGTDEPLVLYGHDDAVSSVRFSPDGARIV-SASWDTTLRLWNSD-GSGHPHVFPGHEDQV 1166 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 SA +SPD + IV S +G +L+ +S+G+ + + + ++ +SP G + Sbjct: 1167 TSARFSPDGAHIVSASH-DGTMRLW--RSDGTGEPVVFRGHDSGLTSARFSPDGVHLISA 1223 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + V + DGS+ ++ + ++ SP G + + D +++ + Sbjct: 1224 STDQS---VRVWRADGSRPPQVLRGHDDVVESVALSPDGGYFVSASW---DGSIRMWPLA 1277 Query: 423 LNGRNETLINTPAYASDPQWVG 444 +G+ L A + Sbjct: 1278 GSGQPLLLDGHTREALSASFSP 1299 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 101/264 (38%), Gaps = 19/264 (7%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +VS +L + + DG+ ++ P + + RFSP+ + A++D + L Sbjct: 1135 RIVSASWDTTLRLWNSDGSGHPHVFPGHEDQVTSARFSPDGAHIVSASHDG----TMRLW 1190 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + P S + + RFS +G IS D+++ ++ D S + L Sbjct: 1191 RSDGTGEPVVFRGHDSGLTSARFSPDGVHL-ISASTDQSVRVWRAD-GSRPPQVLRGHDD 1248 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + S + SPD V S + + GS Q + +SP G + Sbjct: 1249 VVESVALSPDGGYFVSAS---WDGSIRMWPLAGSGQPLLLDGHTREALSASFSPDGTRLV 1305 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + + + G L ++ + +SPSG ++ + D ++++ D Sbjct: 1306 SSSWD-KDLRVHSANGSGQPLVLRGHEAAVWHAEFSPSGERIVSASI---DKSMRIWNAD 1361 Query: 423 LNGRNETL------INTPAYASDP 440 +G+ L +++ ++ D Sbjct: 1362 GSGQPLILRGHEDRVSSAGFSPDG 1385 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 6/139 (4%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V+S S+ + + DG+ + ++ RFSP+ +++ A++D V + Sbjct: 1429 RVLSASWDKSIRIWNIDGSGRPAILRGHHDAVWSARFSPDGERIVSASFDK----SVRVW 1484 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 T P + ++ FS +G+ + S KD+ + I+ D S L Sbjct: 1485 RTDGSEPPIVLRGHEDWVMWAEFSPDGRYIV-SASKDKTIRIWRSD-GSGEPVVLRGHDA 1542 Query: 303 INISASYSPDSSQIVFESD 321 A +SPD +I +D Sbjct: 1543 WVNKARFSPDGGRIASAAD 1561 Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 5/118 (4%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 +++R E +VS S+ V DG+ + + + FSP+ + + Sbjct: 1456 HHDAVWSARFSPDGERIVSASFDKSVRVWRTDGSEPPIVLRGHEDWVMWAEFSPDGRYIV 1515 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 A+ D + + + P + + + RFS +G R S D + ++ Sbjct: 1516 SASKDK----TIRIWRSDGSGEPVVLRGHDAWVNKARFSPDGGRIA-SAADDRTVRVW 1568 >gi|218961137|ref|YP_001740912.1| putative tricorn protease (tri); putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167729794|emb|CAO80706.1| putative tricorn protease (tri); putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 1053 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 16/181 (8%) Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 P S +G+ D ++ V R+TNT + +SPD + F Sbjct: 30 TSEPAISPDGEIVCYVYSND----LWLVPFAGGIPRRITNTTSYEWNPQFSPDGKMLAFS 85 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKK 378 SDR G+ +Y+M + G + K ++ + S+ W + TK+S + + Sbjct: 86 SDRSGQNLIYIMPATGGEAKAVNYE---SFRISEWFSDSQNLLCTKYSPRWGLSFYKVPI 142 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIF-----SRK--KDGDTGSKLYSIDLNGRNETLI 431 +GS+ LL E + A T SP + ++F SR+ G +L+ IDL + T + Sbjct: 143 NGSRPVLLAEIGSSFA-TLSPDNKQIVFQKGGYSRREAYRGSGNGELWLIDLPTKKYTKL 201 Query: 432 N 432 Sbjct: 202 T 202 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 25/218 (11%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 L EP SP+ + V Y +D + P+RI N S P+F Sbjct: 22 LVAQEAYFTSEPAISPDGEIVCYVYSND------LWLVPFAGGIPRRITNTTSYEWNPQF 75 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDRE 323 S +GK S + IY + + + N IS + DS ++ S R Sbjct: 76 SPDGKMLAFSSDRSGQNLIYIMPATGGEAKAV-NYESFRIS-EWFSDSQNLLCTKYSPRW 133 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---------FSGEKFAIG 374 G Y + NGS +++ + SP I F K + Sbjct: 134 GLS-FYKVPINGSRPVLLAEIGSSFAT---LSPDNKQIVFQKGGYSRREAYRGSGNGELW 189 Query: 375 VMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKD 411 ++ + L + P++S +G +L + Sbjct: 190 LIDLPTKKYTKLTNTELSELYPSFSQTG-ALYYCASDG 226 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 89/265 (33%), Gaps = 58/265 (21%) Query: 166 ITGEKGDFNS-RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + ++ F S + +V + N L ++ G R +T + + P+FSP+ + Sbjct: 22 LVAQEAYFTSEPAISPDGEIVCYVYSNDLWLVPFAGGIPRRITNTTS-YEWNPQFSPDGK 80 Query: 225 KVAYATYDDEDILRVYLMDTR-----IDRAPKRIGNFRSMI-------LAPRF------- 265 +A+++ L + T ++ RI + S +PR+ Sbjct: 81 MLAFSSDRSGQNLIYIMPATGGEAKAVNYESFRISEWFSDSQNLLCTKYSPRWGLSFYKV 140 Query: 266 --------------------SSNGKRALI---------SVQKDEAMDIYSVDLQSNATER 296 S + K+ + + + +++ +DL + + Sbjct: 141 PINGSRPVLLAEIGSSFATLSPDNKQIVFQKGGYSRREAYRGSGNGELWLIDLPTKKYTK 200 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQ-SNGSDQKRISQDKEASYFDPVW 354 LTNT + S+S + SD GK Q+ + + ++I+ K S Sbjct: 201 LTNTELSELYPSFSQTGALYYCASD--GKCFQINKVNKLSFRKPEKITNLKPFSARRISL 258 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKD 379 S D + F F+ I Sbjct: 259 SRNNDRLVFEYFN----TIYKYDPT 279 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 13/197 (6%) Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN-- 304 K+I I +F + ++ +IS + + +++ S T + + Sbjct: 338 GGEAKQISFDHGSIFGLQF-LDKRQMVISKLDNGIVKLFTATADSVITLSPVDWFGADSL 396 Query: 305 -ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 ++ Y + + F+ D + Q + +G R A + ++ G + Sbjct: 397 CVTELYKDKNGRWYFKYDDYYRHQKIAIADSGFVNIRPVNTPWAVTTNFAFTEDGRYAVY 456 Query: 364 TKFSGEKF--AIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + + + S +RLL ++ Q W+ +S++ +R D +Y Sbjct: 457 GTLREDNYVKELYLYDVQADSSKRLLADNGWWQNLFWTSDNKSILLTRNSD------IYR 510 Query: 421 IDLNGRNETLINTPAYA 437 +DL R+E ++T + Sbjct: 511 LDLVPRDEFELDTDPWD 527 >gi|255936369|ref|XP_002559211.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583831|emb|CAP91851.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255] Length = 680 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 106/316 (33%), Gaps = 83/316 (26%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + L + + DG N R L + FSP+ + +++ + D D Sbjct: 77 SELYIANADGTNERPLLKD-PGYEYHAEFSPDSEWISFTSERDGDGNSDIWRVHPDGSDL 135 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFI------ 303 + I + + S NG A + +I+ +L++ A +T+T Sbjct: 136 QPIVTSPAAEDSVVISPNGTLAAYVSTANTYNANIWVKNLETGAEWNITDTPNNRPREDM 195 Query: 304 ---NISASYSPDSSQIVFESDREGKEQ--------------------LYVMQSNGSDQKR 340 + ++SPD + + F SDR + + +Y+++ NGSD +R Sbjct: 196 MRGHFRPAWSPDGNWLAFSSDRNTRWEGHGNLTYLGLAGWEHTQELDIYIIRPNGSDLRR 255 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFS--------------GEKFAIGVMKKDGSQERL- 385 ++ P WSP G + F + + I + +G+ R+ Sbjct: 256 VAHRDSHCLGSPKWSPDGQRLIFYEMTRNETWDAHRPETVADANSTIVSVGINGNDRRIE 315 Query: 386 -----------------------------------LVEDSNLQAPTWSPSGRSLIF--SR 408 ++ +++P+WSP G+ +++ Sbjct: 316 VGGPGVKTFPQYVTNSTIGYHLKGGNKEGLYLTNGTYSNTTIRSPSWSPDGKYVVYEKVS 375 Query: 409 KKDGDTGSKLYSIDLN 424 +LYS D + Sbjct: 376 WSIRPLFKELYSWDTD 391 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 36/211 (17%) Query: 269 GKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EG 324 GK+ ++ + + ++Y + L A +SPDS I F S+R +G Sbjct: 62 GKKGVLLMNRIAPGTSELYIANADGTNERPLLKDPGYEYHAEFSPDSEWISFTSERDGDG 121 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQE 383 ++ + +GSD + I A+ V SP G L A+ + I V + E Sbjct: 122 NSDIWRVHPDGSDLQPIVT-SPAAEDSVVISPNGTLAAYVSTANTYNANIWVKNLETGAE 180 Query: 384 RLLVEDSNLQ----------APTWSPSGRSLIFSRKKDGDTGS----------------- 416 + + N + P WSP G L FS ++ Sbjct: 181 WNITDTPNNRPREDMMRGHFRPAWSPDGNWLAFSSDRNTRWEGHGNLTYLGLAGWEHTQE 240 Query: 417 -KLYSIDLNGRNETLINTPAYA--SDPQWVG 444 +Y I NG + + P+W Sbjct: 241 LDIYIIRPNGSDLRRVAHRDSHCLGSPKWSP 271 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 44/388 (11%), Positives = 118/388 (30%), Gaps = 124/388 (31%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + + + + ++ + + + ++ +G+++R + L P++SP+ Q++ + Sbjct: 220 RWEGHGNLTYLGLAGWEHTQELDIYIIRPNGSDLRRVAHRDSHCLGSPKWSPDGQRLIFY 279 Query: 230 TYD-------------------------DEDILRVYLMDTRIDRAPKRIGNF-------- 256 + + R+ + + P+ + N Sbjct: 280 EMTRNETWDAHRPETVADANSTIVSVGINGNDRRIEVGGPGVKTFPQYVTNSTIGYHLKG 339 Query: 257 --------------RSMILAPRFSSNGK-------------------------------- 270 + I +P +S +GK Sbjct: 340 GNKEGLYLTNGTYSNTTIRSPSWSPDGKYVVYEKVSWSIRPLFKELYSWDTDWEYRFTDV 399 Query: 271 --------RALISVQKDEAMDIYSVDLQSNAT--------------ERLTNTLFINISAS 308 R ++ ++ I + DL+ + + L + S Sbjct: 400 FPQLSSDDRVAVTEKQIGNSSIATFDLEDRQVSLIYKPDNTSLLDTTLIQDGLAGAYNPS 459 Query: 309 YSPDSSQIVF-------ESDREGKEQLY------VMQSNGSDQKRISQDKEASYFDPVWS 355 +SPD +VF D G + + + ++ K+ + P +S Sbjct: 460 WSPDGEWVVFGVGAWFEARDWRGGWIVRSTANASYIDVLTNSNLNLTGTKDLNTGFPSFS 519 Query: 356 PQGDLIAFTKF--------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 G + + + G + + ++ + + L + P++SP G ++F+ Sbjct: 520 HDGKKVVYRVWGADTAKYGDGTEIGLRIIDIETRETTQLTSGWD-NLPSFSPDGEFIVFT 578 Query: 408 RKKDGDTGSKLYSIDLNGRNETLINTPA 435 RK T ++ I +G + ++ + Sbjct: 579 RKVA-PTNYEICIIRPDGSDFRILTSSG 605 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 38/221 (17%) Query: 214 LFEPRFSPNQQKVAY---ATYDDEDILRVYL---------MDTRIDRAPKRIGNFRSMIL 261 + P +SP+ + V + A ++ D ++ +D + G Sbjct: 455 AYNPSWSPDGEWVVFGVGAWFEARDWRGGWIVRSTANASYIDVLTNSNLNLTGTKDLNTG 514 Query: 262 APRFSSNGKRALISVQKDEAMD--------IYSVDLQSNATERLTNTLFINISASYSPDS 313 P FS +GK+ + V + + +D+++ T +LT+ + S+SPD Sbjct: 515 FPSFSHDGKKVVYRVWGADTAKYGDGTEIGLRIIDIETRETTQLTS--GWDNLPSFSPDG 572 Query: 314 SQIVFESD-REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 IVF ++ +++ +GSD + ++ A+ VW G ++ + G ++ Sbjct: 573 EFIVFTRKVAPTNYEICIIRPDGSDFRILTSSG-ANDAHAVWRQDGKIMWSSGMYGFQYE 631 Query: 373 -------------IGVMKKDGSQERLLVED-SNLQAPTWSP 399 I +M DGS + L P + P Sbjct: 632 CALYDETFQPYGQIIIMDSDGSNKCPLTNSIWEDSMPLFLP 672 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 21/141 (14%) Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGS 381 G +LY+ ++G++++ + +D Y +SP + I+FT I + DGS Sbjct: 75 GTSELYIANADGTNERPLLKDPGYEYHAE-FSPDSEWISFTSERDGDGNSDIWRVHPDGS 133 Query: 382 QER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTP----- 434 + ++ + + SP+G + + + ++ +L G + +TP Sbjct: 134 DLQPIVTSPAAEDSVVISPNGTLAAYVSTAN-TYNANIWVKNLETGAEWNITDTPNNRPR 192 Query: 435 ----------AYASDPQWVGF 445 A++ D W+ F Sbjct: 193 EDMMRGHFRPAWSPDGNWLAF 213 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 26/160 (16%) Query: 206 LTPSRDQILFEPRFSPNQQKVAY-------ATYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 LT ++D P FS + +KV Y A Y D + + ++D + + + Sbjct: 505 LTGTKDLNTGFPSFSHDGKKVVYRVWGADTAKYGDGTEIGLRIIDIETRETTQLTSGWDN 564 Query: 259 MILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + P FS +G+ + + + +I + + LT++ + A + D +I+ Sbjct: 565 L---PSFSPDGEFIVFTRKVAPTNYEICIIRPDGSDFRILTSSGANDAHAVWRQDG-KIM 620 Query: 318 FESDREG--------------KEQLYVMQSNGSDQKRISQ 343 + S G Q+ +M S+GS++ ++ Sbjct: 621 WSSGMYGFQYECALYDETFQPYGQIIIMDSDGSNKCPLTN 660 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 27/167 (16%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDR----DGANI---------RYLTPSRDQILFEP 217 G + F S S + + D DG I R T P Sbjct: 507 GTKDLNTGFPSFSHDGKKVVYRVWGADTAKYGDGTEIGLRIIDIETRETTQLTSGWDNLP 566 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR------ 271 FSP+ + + + + ++ + + + + + +GK Sbjct: 567 SFSPDGEFIVFTRKVAPTNYEICIIRPDGSDF-RILTSSGANDAHAVWRQDGKIMWSSGM 625 Query: 272 -------ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 AL I +D + LTN+++ + + P Sbjct: 626 YGFQYECALYDETFQPYGQIIIMDSDGSNKCPLTNSIWEDSMPLFLP 672 >gi|166368999|ref|YP_001661272.1| serine/threonine protein kinase [Microcystis aeruginosa NIES-843] gi|166091372|dbj|BAG06080.1| serine/threonine protein kinase [Microcystis aeruginosa NIES-843] Length = 709 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 112/356 (31%), Gaps = 44/356 (12%) Query: 77 DVFNLISQDSFKQKITNPD---------SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE 127 F + I +P S F D G V V+ R Sbjct: 385 GYFKSQEVNPQIAPINSPTNKLTTRKKISEHSFLDKTLTGHSDSVQ-SVVYSPDGRYLAS 443 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKI-AHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + I ++ R + H SD + + G + S Sbjct: 444 ------GSGDKTIKISGVATGKQLRTLTGH--SDTVSSLVYSPDG----------RYLAS 485 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G ++ + + ++ +SP+ + +A ++D + + + Sbjct: 486 GSNDKTIKIWEVATGKQLRTLTGHYGEVYSVVYSPDGRYLASGSWDK----TIKIWEVAT 541 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + S +L+ +S +G+ S D+ + I+ V LT S Sbjct: 542 GKQLRTLTGHSSPVLSVVYSPDGRYLA-SGNGDKTIKIWEV-ATGKQLRTLTGHSGSVWS 599 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 YSPD S + G + + + Q R + V+SP G +A + Sbjct: 600 VVYSPDGSYLA---SGNGDKTTKIWEVATGKQLRTLTGHSKVVWSVVYSPDGRYLASGSW 656 Query: 367 SGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + I + G Q R L S + + +SP GR L GD K++ + Sbjct: 657 D-KTIKIWEV-ATGKQLRTLTGHSSPVYSVVYSPDGRYLA---SGSGDETIKIWRV 707 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 99/290 (34%), Gaps = 23/290 (7%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 H+ D +++TG S + + SG ++ + + Sbjct: 415 HSFLD---KTLTGHSDSVQSVVYSPDGRYLASGSGDKTIKISGVATGKQLRTLTGHSDTV 471 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 +SP+ + +A + D + + + + + + + + +S +G+ Sbjct: 472 SSLVYSPDGRYLASGSNDK----TIKIWEVATGKQLRTLTGHYGEVYSVVYSPDGRYLA- 526 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 S D+ + I+ V LT +S YSPD + G + + + + Sbjct: 527 SGSWDKTIKIWEV-ATGKQLRTLTGHSSPVLSVVYSPDGRYLA---SGNGDKTIKIWEVA 582 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQ 393 Q R S + V+SP G +A + + I + G Q R L S + Sbjct: 583 TGKQLRTLTGHSGSVWSVVYSPDGSYLA-SGNGDKTTKIWEV-ATGKQLRTLTGHSKVVW 640 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + +SP GR L D K++ + G+ + S P + Sbjct: 641 SVVYSPDGRYLASGSW---DKTIKIWEV-ATGKQLRTLT---GHSSPVYS 683 >gi|294672803|ref|YP_003573419.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] gi|294472399|gb|ADE81788.1| mucin-desulfating sulfatase [Prevotella ruminicola 23] Length = 1080 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 53/313 (16%), Positives = 109/313 (34%), Gaps = 40/313 (12%) Query: 163 YQSITGEKGDFNSRILFVSESV----VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 Y +T G+ + + ++ DG + +T + + Sbjct: 206 YTKLTDFAGEDRTPVWTADGKGYYYLSEQDGTFNVWYRSLDGKQNQQITRHKTNPVRFLT 265 Query: 219 --------FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 + + + + + ++ + DR R + S +GK Sbjct: 266 AADNGTLCYGYDGEIYTVRQGSQPQRVNINIVSDKTDRELIREVLTKGATEVVA-SPSGK 324 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + ++Y T R+T+T + + S+SPD + + S+R G +Y Sbjct: 325 EVAFVI----HGEVYVTATDYKTTRRITDTPELERNLSFSPDGRSLAYASERNGCWNIYQ 380 Query: 331 MQSNGSDQKRISQDK----------EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 D+K+ + + F P +SP +AF + G I ++ Sbjct: 381 TTIKNKDEKQFTYATDLTEEQLTKQNHTSFYPRYSPDSKELAFFEDRGT---IRIINLAT 437 Query: 381 SQERLLVEDSNLQAPT-------WSPSGRSLIFSRKKDGDTGS-KLYSIDLNGRNE--TL 430 + R +++ +L + + WSP R L+ + DG + ID +G+ + L Sbjct: 438 KKIRTVMDGKDLFSYSDGDIDFEWSPDSRWLLATYYGDGGYHHDDIALIDASGKQKPYNL 497 Query: 431 INTPAYASDPQWV 443 N+ Y +P WV Sbjct: 498 TNSSYYDMNPHWV 510 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 74/234 (31%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S + D +++V + ++LT + + +SPD S+I F SDRE Sbjct: 30 AISPDGQTIAFSYKGD----LFTVPVTGGTAKQLTTNPAYDYNPVWSPDGSKIAFASDRE 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWS-PQGDLIAFTKFS-----------GEKF 371 G ++VM S G ++I+ +S+F V + D + F+ G+ Sbjct: 86 GGINVWVMPSKGGQPQQITT---SSHFKNVLTFADNDHVLFSMADMPTRQSIIPSLGKFP 142 Query: 372 AIGVMKKDGSQERL---------------------------------------------- 385 + + G + RL Sbjct: 143 QVYEVSVKGGRPRLFSGLMMADININRKTGDVLYHDIKGSEDMYRKHHQSAICRDIWMLS 202 Query: 386 ------LVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 L + + P W+ G+ + ++DG ++ L+G+ I Sbjct: 203 KGKYTKLTDFAGEDRTPVWTADGKGYYYLSEQDGTF--NVWYRSLDGKQNQQIT 254 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 106/365 (29%), Gaps = 119/365 (32%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L + G + LT + P +SP+ K+A+A+ D E + V++M ++ Sbjct: 41 SYKGDLFTVPVTGGTAKQLTT-NPAYDYNPVWSPDGSKIAFAS-DREGGINVWVMPSKGG 98 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISV-----------QKDEAMDIYSVDLQSNATE- 295 + + + + F+ + L S+ + +Y V ++ Sbjct: 99 QPQQITTSSHFKNVL-TFA-DNDHVLFSMADMPTRQSIIPSLGKFPQVYEVSVKGGRPRL 156 Query: 296 ---------------------------------------------------RLTNTLFIN 304 +LT+ + Sbjct: 157 FSGLMMADININRKTGDVLYHDIKGSEDMYRKHHQSAICRDIWMLSKGKYTKLTDFAGED 216 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL---- 360 + ++ D + S+++G ++ +G ++I++ K + G L Sbjct: 217 RTPVWTADGKGYYYLSEQDGTFNVWYRSLDGKQNQQITRHKTNPVRFLTAADNGTLCYGY 276 Query: 361 --IAFTKFSGEK-------------------------------------------FAIGV 375 +T G + + V Sbjct: 277 DGEIYTVRQGSQPQRVNINIVSDKTDRELIREVLTKGATEVVASPSGKEVAFVIHGEVYV 336 Query: 376 MKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 D R + + L+ ++SP GRSL ++ +++G +Y + ++E Sbjct: 337 TATDYKTTRRITDTPELERNLSFSPDGRSLAYASERNGCW--NIYQTTIKNKDEKQFTYA 394 Query: 435 AYASD 439 ++ Sbjct: 395 TDLTE 399 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 105/326 (32%), Gaps = 55/326 (16%) Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQII--------- 140 K+T+ R W + G + E V +R D K +QI Sbjct: 208 KLTDFAGEDRTPVWTADGKGYY----YLSEQDGTFNVWYRSLDGKQNQQITRHKTNPVRF 263 Query: 141 --------------GKKFFSSPASW--RKIAHTISDDIYQSITGEKGDFNSRILFVSESV 184 G+ + S R + +SD + + E + + S S Sbjct: 264 LTAADNGTLCYGYDGEIYTVRQGSQPQRVNINIVSDKTDRELIREVLTKGATEVVASPSG 323 Query: 185 --VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V+ +I + V D R +T + + FSP+ + +AYA+ + +Y Sbjct: 324 KEVAFVIHGEVYVTATDYKTTRRITDTPELERNL-SFSPDGRSLAYASERNG-CWNIYQT 381 Query: 243 DTR----------IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + D +++ PR+S + K + I ++L + Sbjct: 382 TIKNKDEKQFTYATDLTEEQLTKQNHTSFYPRYSPDSKELAFFEDRG---TIRIINLATK 438 Query: 293 ATERLTNTLFI------NISASYSPDSSQIVFESDREGKEQ---LYVMQSNGSDQKRISQ 343 + + + +I +SPDS ++ +G + ++ ++G + Sbjct: 439 KIRTVMDGKDLFSYSDGDIDFEWSPDSRWLLATYYGDGGYHHDDIALIDASGKQKPYNLT 498 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGE 369 + +P W G + FT Sbjct: 499 NSSYYDMNPHWVLGGKAMLFTSNRRG 524 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN-ETLINTPAYASDPQWVG 444 ++ SP G+++ FS K L+++ + G + L PAY +P W Sbjct: 26 MRFCAISPDGQTIAFSYK------GDLFTVPVTGGTAKQLTTNPAYDYNPVWSP 73 >gi|303235446|ref|ZP_07322060.1| dipeptidyl peptidase IV N-terminal domain protein [Prevotella disiens FB035-09AN] gi|302484361|gb|EFL47342.1| dipeptidyl peptidase IV N-terminal domain protein [Prevotella disiens FB035-09AN] Length = 1087 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 28/199 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +GK S + D I+SV + +LT + +SPD I F S RE Sbjct: 30 AISPDGKTIAFSYKGD----IFSVPVNGGIARQLTTNPAYDAYPVWSPDGQNIAFSSSRE 85 Query: 324 GKEQLYVMQSNGSDQKRISQ-----------DKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +Y+M +G KR++ D F P I F G Sbjct: 86 GSLDIYLMSKDGGTPKRLTTNSGSETPMAFKDNNHILFTTEVMPTAKSIYFAS--GIFPQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDL 423 + DGS+ R LV + + + + G L F + ++ Sbjct: 144 TYEVTTDGSRPR-LVSPTTMCDVSINSKGEMLYHDSKGYEDNFRKHHRSPVTRDIWLYS- 201 Query: 424 NGRNETLINTPAYASDPQW 442 G+ L + P W Sbjct: 202 EGKYTKLTDFNGEDRTPVW 220 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 96/266 (36%), Gaps = 37/266 (13%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K S+ G ++ + L SP+ + +A++ DI V + Sbjct: 2 KKSILTAAILGLSVSAFADNTPLWLRYSAISPDGKTIAFSY--KGDIFSVPVN----GGI 55 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 +++ + P +S +G+ S ++ ++DIY + +RLT ++ Sbjct: 56 ARQLTTNPAYDAYPVWSPDGQNIAFSSSREGSLDIYLMSKDGGTPKRLTTNSGSETPMAF 115 Query: 310 ------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 P + I F S Q Y + ++GS + +S + D + + Sbjct: 116 KDNNHILFTTEVMPTAKSIYFAS--GIFPQTYEVTTDGSRPRLVS---PTTMCDVSINSK 170 Query: 358 GDLIAF-----------TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 G+++ S I + +G +L + + P W+ +G S + Sbjct: 171 GEMLYHDSKGYEDNFRKHHRSPVTRDIWLYS-EGKYTKLTDFNGEDRTPVWASNGTSYYY 229 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLIN 432 ++DG +Y +L+G + + Sbjct: 230 LSEEDGTF--NVYKRNLDGSGKKQLT 253 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 114/296 (38%), Gaps = 38/296 (12%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Y ++ E G FN V + + G K L ++ +R+LT + + L + + Sbjct: 227 YYYLSEEDGTFN-----VYKRNLDGSGKKQLTFHKKN--PVRFLTAANNGTLC---YGYD 276 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + + ++ +ID+ +R + S GK + D Sbjct: 277 GEIYTLNEGKEPQKVNISIVTDQIDKKLERQVRSSGATEI-KLSPKGKEIAFVLHGD--- 332 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y L T+++TNT + ++PD IV+ S+R G Q+Y + +K + Sbjct: 333 -VYVTSLDYKTTKQVTNTAEQERNIDFAPDGRGIVYSSERNGIWQIYETKIKNKAEKNFT 391 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + + P +SP G +AF + A+ V+ + +++ Sbjct: 392 YSTDLVEERLTNTDQTSQMPQYSPDGKKVAFFENRA---ALKVIDLKSKAVTAATDGNDV 448 Query: 393 QAP-------TWSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + +WSP R L+ + G + ID+ G+ + + T + +D Sbjct: 449 YSYSDGDIWFSWSPDSRWLLAPYMGN-AGWNNPDISLIDITGKKKPVNLTQSGYND 503 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 48/382 (12%), Positives = 105/382 (27%), Gaps = 132/382 (34%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K + + +G R LT P +SP+ Q +A+++ + L +YLM ++ Sbjct: 41 SYKGDIFSVPVNGGIARQLTT-NPAYDAYPVWSPDGQNIAFSSSREGS-LDIYLM-SKDG 97 Query: 248 RAPKRIGNFRSMILAPRF------------SSNGKRALISV---------QKDEAMDIYS 286 PKR+ F K + D + Sbjct: 98 GTPKRLTTNSGSETPMAFKDNNHILFTTEVMPTAKSIYFASGIFPQTYEVTTDGSRPRLV 157 Query: 287 ---------VDLQS-------------------------------NATERLTNTLFINIS 306 ++ + +LT+ + + Sbjct: 158 SPTTMCDVSINSKGEMLYHDSKGYEDNFRKHHRSPVTRDIWLYSEGKYTKLTDFNGEDRT 217 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL------ 360 ++ + + + S+ +G +Y +GS +K+++ K+ + G L Sbjct: 218 PVWASNGTSYYYLSEEDGTFNVYKRNLDGSGKKQLTFHKKNPVRFLTAANNGTLCYGYDG 277 Query: 361 -----------------------------------------------IAFTKFSGEKFAI 373 IAF + Sbjct: 278 EIYTLNEGKEPQKVNISIVTDQIDKKLERQVRSSGATEIKLSPKGKEIAFVLHGD----V 333 Query: 374 GVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG----------DTGSKLYSID 422 V D + + + + ++P GR +++S +++G + K ++ Sbjct: 334 YVTSLDYKTTKQVTNTAEQERNIDFAPDGRGIVYSSERNGIWQIYETKIKNKAEKNFTYS 393 Query: 423 LNGRNETLINTPAYASDPQWVG 444 + E L NT + PQ+ Sbjct: 394 TDLVEERLTNTDQTSQMPQYSP 415 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + DQ P++SP+ +KVA+ ++ + + ++ + + Sbjct: 401 LTNTDQTSQMPQYSPDGKKVAFFENRAALKVIDLKSKAVTAATDGNDVYSYSDGDIWFSW 460 Query: 266 SSNGKRALISVQKD---EAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESD 321 S + + L + DI +D+ LT + + + A ++ ++F SD Sbjct: 461 SPDSRWLLAPYMGNAGWNNPDISLIDITGKKKPVNLTQSGYNDTGAKWALGGKAMLFFSD 520 Query: 322 REG 324 R G Sbjct: 521 RAG 523 Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%) Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 SP G+++ FS K ++S+ +NG + T PAY + P W Sbjct: 30 AISPDGKTIAFSYK------GDIFSVPVNGGIARQLTTNPAYDAYPVWSP 73 >gi|284032800|ref|YP_003382731.1| beta-lactamase [Kribbella flavida DSM 17836] gi|283812093|gb|ADB33932.1| beta-lactamase [Kribbella flavida DSM 17836] Length = 1117 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 50/215 (23%) Query: 264 RFSSNGKRALISVQKDEAM------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 S +G + + ++ +A ++ V RLT + + ++SPD +++ Sbjct: 20 ALSPDGNQVVYVLRTIDAAADRTEHALWRVPSAGGEARRLTRGTS-DRAPAWSPDGTKLA 78 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------------ 365 F ++G QL+++ ++G + ++++ + P WSP G+ IAF+ Sbjct: 79 FLRAQDGPPQLWLLPADGGEPEQLTTLPLGA-GTPSWSPDGERIAFSSAVDIAAAADEDD 137 Query: 366 ----FSGE---------------------KFAIGVMKKDGSQERLLVE-DSNLQAPTWSP 399 G + + V+ + R + E D + P+WSP Sbjct: 138 ETRERRGHAPIVTERLDYQADGAGLLRTIRQHLHVVDVASKKCRQVTEGDWHAGDPSWSP 197 Query: 400 SGRSLIFSRKKDGDTGSK----LYSIDLNGRNETL 430 R L F D + Y +D++ T Sbjct: 198 DSRKLAFGAGTAPDADLRPTAPAYLLDVSDEKATP 232 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 53/268 (19%) Query: 218 RFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 SP+ +V Y + +R+ S AP +S +G + Sbjct: 20 ALSPDGNQVVYVLRTIDAAADRTEHALWRVPSAGGEARRLTRGTS-DRAPAWSPDGTKLA 78 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------------- 320 +D ++ + E+LT + S+SPD +I F S Sbjct: 79 FLRAQDGPPQLWLLPADGGEPEQLTTLPLGAGTPSWSPDGERIAFSSAVDIAAAADEDDE 138 Query: 321 --DREG----------------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +R G ++ L+V+ ++++ + + DP WSP Sbjct: 139 TRERRGHAPIVTERLDYQADGAGLLRTIRQHLHVVDVASKKCRQVT-EGDWHAGDPSWSP 197 Query: 357 QGDLIAFTKFSGEKFAIG----VMKKDGSQERLLVE----DSNLQAPT-WSPSGRSLIFS 407 +AF + + D S E+ + L P W+ +LI Sbjct: 198 DSRKLAFGAGTAPDADLRPTAPAYLLDVSDEKATPQLAGLTEGLAGPILWTADSAALIVV 257 Query: 408 RKKDGDTGSK-LYSIDLNGRNETLINTP 434 DG G L + L+G + + P Sbjct: 258 GTSDGPVGHAGLLRLPLDGGEVSNLAAP 285 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 21/229 (9%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY-----ATYDDEDILRVYLM 242 I+ L V+D R +T D +P +SP+ +K+A+ D YL+ Sbjct: 165 TIRQHLHVVDVASKKCRQVTEG-DWHAGDPSWSPDSRKLAFGAGTAPDADLRPTAPAYLL 223 Query: 243 DTRIDRAPKRIGNFRSMILAP-RFSSNGKRALISVQKDE---AMDIYSVDLQSNATERLT 298 D ++A ++ + P ++++ ++ D + + L L Sbjct: 224 DVSDEKATPQLAGLTEGLAGPILWTADSAALIVVGTSDGPVGHAGLLRLPLDGGEVSNLA 283 Query: 299 NTLFINISA----------SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 L N+ D ++F G LY + +G + + Sbjct: 284 APLDRNVMPGGPGYPGALPVLVDDGGTVLFCVRDRGCTHLYAVPVDGGAPRHVL-GGPGD 342 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 + G + + + + + + L E S A + Sbjct: 343 IVSGLSVANGQAVVVLTTATSYGEVVKVDLSSGEAQTLTEHSADVAEVF 391 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 L E + + SP G +++ + T L+ + G + P Sbjct: 10 LTEFAVPEQVALSPDGNQVVYVLRTIDAAADRTEHALWRVPSAGGEARRLTRGTSDRAPA 69 Query: 442 WVG 444 W Sbjct: 70 WSP 72 >gi|149276287|ref|ZP_01882431.1| WD40-like repeat/amidohydrolase domain protein [Pedobacter sp. BAL39] gi|149232807|gb|EDM38182.1| WD40-like repeat/amidohydrolase domain protein [Pedobacter sp. BAL39] Length = 1080 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 25/210 (11%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 I + S +GK + D IY + + L+ + + +SP+ Sbjct: 39 IDTEEGTWMNLDVSPDGKDITFDLLGD----IYVMPIIGGTATLLSGGIAWEVQPRFSPN 94 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL-IAFTKFSGEKF 371 I + SD+ G + +++M +GS +++++++ + W P + IA ++G + Sbjct: 95 GKYISYTSDKTGGDNIWIMNRDGSAKRQVTKETFRLLNNATWMPNSEYLIARKHYTGTRS 154 Query: 372 ----AIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIFSRK--------KDGDTG 415 + + G + L + + P SPSGR L FS D Sbjct: 155 LGAGEMWMYSIYGGEGVQLTKRKNDQQDAGEPNVSPSGRYLYFSEDMAPGPNFEYSKDPN 214 Query: 416 SKLYSID----LNGRNETLINTPAYASDPQ 441 +Y+I G+ LI A PQ Sbjct: 215 GLIYAIRRLDMTTGKLTDLIAQAGGAVRPQ 244 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 30/231 (12%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ + + + D +Y+M I + + + PRFS NGK + K Sbjct: 52 SPDGKDITFDLLGD-----IYVMPI-IGGTATLLSGGIAWEVQPRFSPNGKYISYTSDKT 105 Query: 280 EAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIV----FESDRE-GKEQLYVMQS 333 +I+ ++ +A ++T F + +A++ P+S ++ + R G ++++ Sbjct: 106 GGDNIWIMNRDGSAKRQVTKETFRLLNNATWMPNSEYLIARKHYTGTRSLGAGEMWMYSI 165 Query: 334 NGSDQKRISQDKE--ASYFDPVWSPQGDLIAFTKF-------------SGEKFAIGVMKK 378 G + ++++ K +P SP G + F++ +G +AI + Sbjct: 166 YGGEGVQLTKRKNDQQDAGEPNVSPSGRYLYFSEDMAPGPNFEYSKDPNGLIYAIRRLDM 225 Query: 379 DGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + L+ + P SP G+ + + ++ S LY +L E Sbjct: 226 TTGKLTDLIAQAGGAVRPQVSPDGKFMAYVKRV--RLKSVLYIQNLQTAEE 274 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 20/198 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + + V + + + P+R+ N P+ SS+GK + + D Sbjct: 364 SADGKMVVF------NAAGYLYKKELPNGIPERVTNSNEFEFEPKISSDGKYVIYATWND 417 Query: 280 E-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------SDREGKEQLY 329 + I DL+S T LT+ S SYS +IVF +Y Sbjct: 418 DLKGAIKRADLKSGKTTTLTDEKGFYYSPSYSSKGDKIVFRKGVGNEVLGYSYGRGTGIY 477 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 +M +NG + +S + P ++ I F + K A + +G+ ER Sbjct: 478 LMSANGGAKTLVSDNG----IRPQFNADDTRIYFQGYDNGKKAFKSIDLNGANERTHYTS 533 Query: 390 SNLQAPTWSPSGRSLIFS 407 + SP G+ + F+ Sbjct: 534 TYANQFAPSPDGKWMAFT 551 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 89/274 (32%), Gaps = 34/274 (12%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E+G + + + ++ + + VM G L +PRFSPN + ++ Sbjct: 41 TEEGTWMNLDVSPDGKDITFDLLGDIYVMPIIGGTA-TLLSGGIAWEVQPRFSPNGKYIS 99 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL----ISVQKD-EAM 282 Y + D +++M+ + ++ + N + + + + A Sbjct: 100 YTS-DKTGGDNIWIMNRDGSAKRQVTKETFRLLNNATWMPNSEYLIARKHYTGTRSLGAG 158 Query: 283 DIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDREGKEQL-YVMQSNG--S 336 +++ + +LT N + SP + F D Y NG Sbjct: 159 EMWMYSIYGGEGVQLTKRKNDQQDAGEPNVSPSGRYLYFSEDMAPGPNFEYSKDPNGLIY 218 Query: 337 DQKRISQDKE---------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 +R+ P SP G +A+ K K + + ++E + Sbjct: 219 AIRRLDMTTGKLTDLIAQAGGAVRPQVSPDGKFMAYVKRVRLKSVLYIQNLQTAEEWPVY 278 Query: 388 ED------------SNLQAPTWSPSGRSLIFSRK 409 E+ W+P G++L+F + Sbjct: 279 EELSHDQQETWAIFGVYPNYAWTPDGKALVFYAR 312 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 64/270 (23%) Query: 214 LFEPRFSPNQQKVAYA-TYDDEDILRVYLMDT-RIDRAPKRIGNFRSMILA-----P--R 264 P+ SP+ + +AY + +L + + T + + + + A P Sbjct: 240 AVRPQVSPDGKFMAYVKRVRLKSVLYIQNLQTAEEWPVYEELSHDQQETWAIFGVYPNYA 299 Query: 265 FSSNGKRALI------------SVQKDEAMDIYSVDLQS------------------NAT 294 ++ +GK + S+Q + + + Q+ Sbjct: 300 WTPDGKALVFYARGKIKRVELNSLQVTDIP-FHVISTQTVQEALHFTHQVFSNEFNAKMI 358 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 +LT S D +VF + LY + +R++ E F+P Sbjct: 359 RQLTT----------SADGKMVVFNA----AGYLYKKELPNGIPERVTNSNE-FEFEPKI 403 Query: 355 SPQGDLIAFTKFSGE-KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDG 412 S G + + ++ + K AI + L ++ +P++S G ++F + Sbjct: 404 SSDGKYVIYATWNDDLKGAIKRADLKSGKTTTLTDEKGFYYSPSYSSKGDKIVFRKGVGN 463 Query: 413 D-------TGSKLYSIDLNGRNETLINTPA 435 + G+ +Y + NG +TL++ Sbjct: 464 EVLGYSYGRGTGIYLMSANGGAKTLVSDNG 493 Score = 70.0 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 96/311 (30%), Gaps = 49/311 (15%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD--QILFEPRFSPNQQKVAYATYDDE 234 I + + + + G LT ++ Q EP SP+ + + ++ Sbjct: 144 IARKHYTGTRSLGAGEMWMYSIYGGEGVQLTKRKNDQQDAGEPNVSPSGRYLYFSEDMAP 203 Query: 235 DI------------LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + +D + I + P+ S +GK + Sbjct: 204 GPNFEYSKDPNGLIYAIRRLDMTTGKLTDLIAQAGGAVR-PQVSPDGKFMAYVKRVRLKS 262 Query: 283 DIYSVDLQSNATERLTNTLFIN---------ISAS--YSPDSSQIVFESD----REGKEQ 327 +Y +LQ+ + L + + + ++PD +VF + R Sbjct: 263 VLYIQNLQTAEEWPVYEELSHDQQETWAIFGVYPNYAWTPDGKALVFYARGKIKRVELNS 322 Query: 328 LYVMQSNG--------SDQKRISQDKEASYFDPVW------SPQGDLIAFTKFSGEKFAI 373 L V + + ++ F+ S G ++ F + + Sbjct: 323 LQVTDIPFHVISTQTVQEALHFTHQVFSNEFNAKMIRQLTTSADGKMVVF---NAAGYLY 379 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLIN 432 +G ER+ + P S G+ +I++ D D + DL +G+ TL + Sbjct: 380 KKELPNGIPERVTNSNEFEFEPKISSDGKYVIYATWND-DLKGAIKRADLKSGKTTTLTD 438 Query: 433 TPAYASDPQWV 443 + P + Sbjct: 439 EKGFYYSPSYS 449 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 28/204 (13%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY--------AT 230 +V + + +K ++ D LT + + P +S K+ + Sbjct: 409 YVIYATWNDDLKGAIKRADLKSGKTTTLTDEK-GFYYSPSYSSKGDKIVFRKGVGNEVLG 467 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 Y +YLM N + P+F+++ R + S+DL Sbjct: 468 YSYGRGTGIYLMSANGGAKTLVSDNG----IRPQFNADDTRIYFQGYDNGKKAFKSIDLN 523 Query: 291 S-NATERLTNTLFINISASYSPDSSQIVFE---------SDREGKEQLYVMQSNGSDQKR 340 N T+T + SPD + F R G Q + R Sbjct: 524 GANERTHYTSTYANQFAP--SPDGKWMAFTELFNVYLTPMVRTGAAQELSSGNKSIPLTR 581 Query: 341 ISQDKEASYFDPVWSPQGDLIAFT 364 +++D WS + +T Sbjct: 582 LTKDAGTYM---HWSSDSQRLFWT 602 >gi|37521272|ref|NP_924649.1| peptidase [Gloeobacter violaceus PCC 7421] gi|35212269|dbj|BAC89644.1| gll1703 [Gloeobacter violaceus PCC 7421] Length = 730 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 110/334 (32%), Gaps = 86/334 (25%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+++V SV + + A S PR+SP+ + +A+ ++D Sbjct: 60 RVVYVRVSVDEKKDTYTTSLWQVATATGEARPLSTGARDSSPRWSPDGKTLAFLRSAEKD 119 Query: 236 ----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------- 277 +++L+ + + + +S + +R + Sbjct: 120 GKSEPPQIHLLSLD-GGEARALTDLPKGAGGISWSPDSRRIAFTSSTKNEDIAEKQKKNE 178 Query: 278 --------------------------KDEAMDIYSVDLQS------NATERLTNTLFINI 305 +D I+ VDL + A +++T F Sbjct: 179 DDKPKKSDVRVIKRAIYRFNGAGYLEEDRPGHIWIVDLPTDPAAPPPAAKQITKGEFEED 238 Query: 306 SASYSPDSSQIVFESDREG-------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + ++SPD +++ F SDR +Y + + G + R+ + + SP G Sbjct: 239 APAWSPDGTRLYFTSDRTREAYYEPVDTDIYTVSAGGGEISRVV-NIDGPIGTFALSPDG 297 Query: 359 DLIAFT-------KFSGEKFAIGVMKKD-GSQERLLVEDSNLQA---------------- 394 IAF ++S + + V G+ + L D + A Sbjct: 298 RRIAFVGFVNAKPEYSYTQPDLFVADLSPGAAPKNLTADYDFDAGDGIGGDQRAPRAAAD 357 Query: 395 --PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 P WS GRS++ + + G K + +GR Sbjct: 358 YRPVWSGDGRSIVIATAERGRANLKRFDA-ADGR 390 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 89/282 (31%), Gaps = 72/282 (25%) Query: 212 QILFEPRFSPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + +PR SP+ +V Y + +D L R + + +PR+S + Sbjct: 47 NWVADPRLSPDGARVVYVRVSVDEKKDTYTTSLWQVATATGEARPLSTGARDSSPRWSPD 106 Query: 269 GKRALI--SVQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES--- 320 GK S +KD I+ + L LT+ S+SPDS +I F S Sbjct: 107 GKTLAFLRSAEKDGKSEPPQIHLLSLDGGEARALTDLPKGAGGISWSPDSRRIAFTSSTK 166 Query: 321 ---------------------------------------DREGKEQLYVMQSNG------ 335 DR G ++++ Sbjct: 167 NEDIAEKQKKNEDDKPKKSDVRVIKRAIYRFNGAGYLEEDRPG--HIWIVDLPTDPAAPP 224 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVE 388 K+I++ E P WSP G + FT + I + G + +V Sbjct: 225 PAAKQITK-GEFEEDAPAWSPDGTRLYFTSDRTREAYYEPVDTDIYTVSAGGGEISRVVN 283 Query: 389 -DSNLQAPTWSPSGRSLIFSRKKDGD-----TGSKLYSIDLN 424 D + SP GR + F + T L+ DL+ Sbjct: 284 IDGPIGTFALSPDGRRIAFVGFVNAKPEYSYTQPDLFVADLS 325 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 50/233 (21%) Query: 217 PRFSPNQQKVAYATYDDEDILR------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 P +SP+ ++ + + + +Y + + + N I S +G+ Sbjct: 240 PAWSPDGTRLYFTSDRTREAYYEPVDTDIYTVSAGGGEISRVV-NIDGPIGTFALSPDGR 298 Query: 271 RALISVQKD-------EAMDIYSVDLQ-SNATERLTNTL-----------------FINI 305 R + D++ DL A + LT + Sbjct: 299 RIAFVGFVNAKPEYSYTQPDLFVADLSPGAAPKNLTADYDFDAGDGIGGDQRAPRAAADY 358 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-FT 364 +S D IV + G+ L + ++ + + +P G A Sbjct: 359 RPVWSGDGRSIVIATAERGRANLKRFDAADGRASDVTT-GDHEIAEYTATPDGSRFAGVI 417 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSN-------------LQAPTWSPSGRSL 404 E I ++ G+ R L + + P++ G+++ Sbjct: 418 SRPTEVGDIYLLSL-GASPRRLTRGNAPLFDTLQTSAPEEINYPSF--DGQTI 467 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVEDSNLQAPTWS 398 K DP SP G + + + S ++ + + + R L + +P WS Sbjct: 45 KFNWVADPRLSPDGARVVYVRVSVDEKKDTYTTSLWQVATATGEARPLSTGARDSSPRWS 104 Query: 399 PSGRSLIFSRKKDGDTGS---KLYSIDLNGRNET-LINTPAYASDPQWVG 444 P G++L F R + D S +++ + L+G L + P A W Sbjct: 105 PDGKTLAFLRSAEKDGKSEPPQIHLLSLDGGEARALTDLPKGAGGISWSP 154 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 30/233 (12%) Query: 175 SRILFVSESVVSGIIK---NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +R+ F S+ + + + G I + D + SP+ +++A+ + Sbjct: 247 TRLYFTSDRTREAYYEPVDTDIYTVSAGGGEISRVVN-IDGPIGTFALSPDGRRIAFVGF 305 Query: 232 DDEDILRVYLM------DTRIDRAPKRIG---------NFRSMILAPR--------FSSN 268 + Y D APK + APR +S + Sbjct: 306 VNAKPEYSYTQPDLFVADLSPGAAPKNLTADYDFDAGDGIGGDQRAPRAAADYRPVWSGD 365 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV-FESDREGKEQ 327 G+ +I+ + ++ D +T + +PD S+ S Sbjct: 366 GRSIVIATAERGRANLKRFDAADGRASDVTTGDHEIAEYTATPDGSRFAGVISRPTEVGD 425 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 +Y++ G+ +R+++ A FD + + + I + F G+ + K G Sbjct: 426 IYLLSL-GASPRRLTR-GNAPLFDTLQTSAPEEINYPSFDGQTIQGWLFKPPG 476 >gi|227537270|ref|ZP_03967319.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242874|gb|EEI92889.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1025 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 29/222 (13%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT-----ERLTN-----TLF 302 GN M ++P S +GK +KD ++D++ D + RLTN F Sbjct: 276 GNSGRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFSF 335 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLI 361 + + ++SPDS + F GK +L + + + + F + W+ GD + Sbjct: 336 LESAGTFSPDSRKFAFSVFSAGKNKLMTVDVATGKTLSVEAMGDITEFTNITWAADGDHV 395 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR--------KKDG 412 AF+ I + + L D + P++S G+S++FS + Sbjct: 396 AFSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQPSFSRDGKSIVFSTDRVALASDNRSV 455 Query: 413 DTGSKLYSIDLNGRNETLIN--------TPAYASDPQWVGFM 446 D L +D+ +N ++ P ++S+ + + F+ Sbjct: 456 DIPMNLAIVDIRTKNIQNLDIFPGANNLNPHFSSNGEQIYFL 497 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 89/238 (37%), Gaps = 24/238 (10%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FR 257 T + ++ P SP+ + VA+ + D + ++L D + +++G+ F Sbjct: 275 TGNSGRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFS 334 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASYSPDSSQ 315 + A FS + ++ SV + +VD+ + T + I + +++ D Sbjct: 335 FLESAGTFSPDSRKFAFSVFSAGKNKLMTVDVATGKTLSVEAMGDITEFTNITWAADGDH 394 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------K 365 + F + G +Y+ +++ D S F P +S G I F+ + Sbjct: 395 VAFSGLKNGHSDIYIYNLKTKKLDQLTND-VYSDFQPSFSRDGKSIVFSTDRVALASDNR 453 Query: 366 FSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + ++ + L +N P +S +G + F DG Y++ Sbjct: 454 SVDIPMNLAIVDIRTKNIQNLDIFPGANNLNPHFSSNGEQIYFLSNGDGYRNMYRYTV 511 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Query: 218 RFSPNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 FSP+ +K A++ + + V T A I F ++ ++++G Sbjct: 341 TFSPDSRKFAFSVFSAGKNKLMTVDVATGKTLSVEAMGDITEFTNIT----WAADGDHVA 396 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----------E 323 S K+ DIY +L++ ++LTN ++ + S+S D IVF +DR + Sbjct: 397 FSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQPSFSRDGKSIVFSTDRVALASDNRSVD 456 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 L ++ + + + A+ +P +S G+ I F + +Q Sbjct: 457 IPMNLAIVDIRTKNIQNLDIFPGANNLNPHFSSNGEQIYFLSNGDGYRNMYRYTVASAQL 516 Query: 384 RLLVE 388 L + Sbjct: 517 EKLTD 521 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 92/271 (33%), Gaps = 32/271 (11%) Query: 122 DRLRVEFRLWDVKDRKQI--IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 D ++ L D K I +G + + D S G F+ Sbjct: 301 DMFSIDLFLADAHTGKVIRKLGSRLTNK------------DIDEFSFLESAGTFSPDSRK 348 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + SV S + V G + ++ + VA++ + + Sbjct: 349 FAFSVFSAGKNKLMTVDVATGKTLSVEAMGDITEFTNITWAADGDHVAFSGLKNGHS-DI 407 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----------DEAMDIYSVDL 289 Y+ + + + ++ N P FS +GK + S + D M++ VD+ Sbjct: 408 YIYNLKT-KKLDQLTNDVYSDFQPSFSRDGKSIVFSTDRVALASDNRSVDIPMNLAIVDI 466 Query: 290 QSNATERL-TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ++ + L N++ +S + QI F S+ +G +Y + ++++ Sbjct: 467 RTKNIQNLDIFPGANNLNPHFSSNGEQIYFLSNGDGYRNMYRYTVASAQLEKLTDYFTGI 526 Query: 349 YFDPVWSPQG-----DLIAFTKFSGEKFAIG 374 +SP D I ++ F +++ Sbjct: 527 SGITEYSPAMSISATDEIVYSYFKNNAYSVY 557 >gi|326532988|dbj|BAJ89339.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 654 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 118/370 (31%), Gaps = 71/370 (19%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 L+D++ + F + + H Y G F V Sbjct: 277 HIELFDLETEQ------FTAVTSLLNPELHH-----YNPFFSPSGGRLGYHRFRGAGVQG 325 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + ++IR L P FSP+ + A + + R Sbjct: 326 DSMIPYLQPVRSPVSSIRMLRVHGS----FPSFSPDAKHFALNGDFFKSPG---VTILRA 378 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQK--------------------DEAMDIYS 286 D + + + + + +S + + + D Sbjct: 379 DGSKRWVLAKQPNLFYTSWSPTESGVVFTSIGPIFETPKATVRVARIEFDPSELTDDRGD 438 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--KRISQD 344 VD+ R + + SP +VF S R G + LY++ + ++ +R++ D Sbjct: 439 VDVAVKELTR--PEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYIVDAARGEETIRRVT-D 495 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEK-----FAIGVMKKDGSQERLL----------VED 389 E P WSP G+LIAF+ E F+I +++ DG+ R + + Sbjct: 496 GEWIDTMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTGLRRVHVAGPAGSAEADK 555 Query: 390 SNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLINTPAY- 436 + +SP G+ L+F+ G LY L+G + AY Sbjct: 556 ERINHVCFSPDGQWLLFTANLGGVMAEPISGPNQFQPYGDLYVCRLDGSGVLRLTCNAYE 615 Query: 437 ASDPQWVGFM 446 P W + Sbjct: 616 NGTPTWGPAL 625 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 104/312 (33%), Gaps = 46/312 (14%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD---- 232 I + L ++ + + + + P FSP+ ++ Y + Sbjct: 264 IAVATRRKGLAKRHIELFDLETEQFTAVTSLLNPELHHYNPFFSPSGGRLGYHRFRGAGV 323 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 D + YL R + R+ P FS + K ++ ++ + + + Sbjct: 324 QGDSMIPYLQPVRSPVSSIRMLRVHG--SFPSFSPDAKHFALNGDFFKSPGVTILRADGS 381 Query: 293 ATERLTNTLFINISASYSPDSSQIVFES------DREGKEQLYVMQSNGSD--------- 337 L + + S+SP S +VF S + ++ ++ + S+ Sbjct: 382 KRWVLAKQPNLFYT-SWSPTESGVVFTSIGPIFETPKATVRVARIEFDPSELTDDRGDVD 440 Query: 338 --QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQ 393 K +++ + + P SP G + F + ++ +E R + + + Sbjct: 441 VAVKELTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYIVDAARGEETIRRVTDGEWID 500 Query: 394 -APTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPA-------------- 435 P+WSP G + FS + + +Y + +G ++ Sbjct: 501 TMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTGLRRVHVAGPAGSAEADKERINH 560 Query: 436 --YASDPQWVGF 445 ++ D QW+ F Sbjct: 561 VCFSPDGQWLLF 572 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 18/185 (9%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD-SSQIVFESDREGKEQLYVM 331 + SV + + SV A R T+ + +N +A ++ D ++ F S+R G L++ Sbjct: 25 VFSVAVPQTPE--SVSAAGLAERRHTDGVSVNFNAQFADDVGEEVAFVSERTGSAGLFLC 82 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-----GVMKKDGSQE--- 383 + + E S F + +G + F + A V + E Sbjct: 83 RPESERAVPL-PVVEGSLFHDRPAVRGGRLYFVSSHEKPAAWFRSWAAVYATELGSEETV 141 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL------YSIDLNGRNETLINTPAYA 437 R+ + +P S SG L + + ++ + A Sbjct: 142 RVTPQGVADMSPAVSTSGELLAVASYGERPWAFDFHELETEVAVFRAADPARRVVVAARG 201 Query: 438 SDPQW 442 P W Sbjct: 202 GWPTW 206 >gi|271967011|ref|YP_003341207.1| peptidase S9 prolyl oligopeptidase [Streptosporangium roseum DSM 43021] gi|270510186|gb|ACZ88464.1| peptidase S9 prolyl oligopeptidase [Streptosporangium roseum DSM 43021] Length = 642 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%) Query: 263 PRFSSNGKRALISV-----QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 PR G V + DE + RLT + + +SPD + Sbjct: 18 PRLRPGGSDVAYVVATTDRESDENRSEIWLAAPGAEPRRLTGGP-RDSAPRWSPDGHSLA 76 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------ 371 F +G+ Q++++ +G + + ++ + VWSP G IA+ G+ Sbjct: 77 FLRPVDGRAQIHLLPMDGGEPRVLTAAPLGA-GAAVWSPDGTGIAYGAPHGDPDPHAPVV 135 Query: 372 -------------------AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR--- 408 + V+ Q R + D + P+WSP GR L F+ Sbjct: 136 ADRLEYKADGVGLLRGLTTHLSVVDVATGQTRQITSGDFHAGEPSWSPDGRKLAFAASME 195 Query: 409 -KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQW 442 +D +YS+D++G L+ W Sbjct: 196 PDRDLAVTGAVYSVDVSGGEPELLTGAGVICTDAW 230 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 40/252 (15%) Query: 210 RDQILFEPRFSPNQQKVAYA---TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 R + +PR P VAY T + D R + P+R+ APR+S Sbjct: 11 RIAVPEDPRLRPGGSDVAYVVATTDRESDENRSEIWLAAPGAEPRRLTGGPR-DSAPRWS 69 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----- 321 +G D I+ + + LT +A +SPD + I + + Sbjct: 70 PDGHSLAFLRPVDGRAQIHLLPMDGGEPRVLTAAPLGAGAAVWSPDGTGIAYGAPHGDPD 129 Query: 322 --------------------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 R L V+ ++I+ + +P WSP G + Sbjct: 130 PHAPVVADRLEYKADGVGLLRGLTTHLSVVDVATGQTRQITSGDFHA-GEPSWSPDGRKL 188 Query: 362 AFTKFSGEKFAIGV------MKKDGSQERLLVEDSNLQAPTWSPSGRSLI--FSRKKDGD 413 AF + V + G + LL + W GR L+ F+ G Sbjct: 189 AFAASMEPDRDLAVTGAVYSVDVSGGEPELLTGAGVICTDAWWLGGRLLVAGFAGDPVGH 248 Query: 414 TGSKLYSIDLNG 425 +L+S+ +G Sbjct: 249 --IRLFSLGSDG 258 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 34/170 (20%) Query: 306 SASYSPDSSQIVF---ESDREG---KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 P S + + +DRE + +++ + + G++ +R++ P WSP G Sbjct: 17 DPRLRPGGSDVAYVVATTDRESDENRSEIW-LAAPGAEPRRLTGGPR--DSAPRWSPDGH 73 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGD----- 413 +AF + + I ++ DG + R+L A WSP G + + Sbjct: 74 SLAFLRPVDGRAQIHLLPMDGGEPRVLTAAPLGAGAAVWSPDGTGIAYGAPHGDPDPHAP 133 Query: 414 ------------------TGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 + L +D+ G+ + + +A +P W Sbjct: 134 VVADRLEYKADGVGLLRGLTTHLSVVDVATGQTRQITSGDFHAGEPSWSP 183 Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 49/189 (25%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V+D R +T S D EP +SP+ +K+A+A + D Sbjct: 156 LSVVDVATGQTRQIT-SGDFHAGEPSWSPDGRKLAFAASMEPD----------------- 197 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + ++ +YSVD+ E LT I A + Sbjct: 198 -----------------RDLAVTGA------VYSVDVSGGEPELLTGAGVICTDAWWL-G 233 Query: 313 SSQIV--FESDREGKEQLYVMQSNGSDQKRISQDKE---ASYFDPVWSPQ--GDLIAFTK 365 +V F D G +L+ + S+G + D+ + P +PQ GD + F Sbjct: 234 GRLLVAGFAGDPVGHIRLFSLGSDGLVEVETGLDRNVMVGASGYPGAAPQLAGDDLIFCA 293 Query: 366 FSGEKFAIG 374 + Sbjct: 294 RDRGLTHLY 302 >gi|109898138|ref|YP_661393.1| peptidase S9, prolyl oligopeptidase active site region [Pseudoalteromonas atlantica T6c] gi|109700419|gb|ABG40339.1| peptidase S9, prolyl oligopeptidase active site region [Pseudoalteromonas atlantica T6c] Length = 692 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 88/270 (32%), Gaps = 21/270 (7%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + FV + K + D N+ + F P SP++ K+AY + Sbjct: 56 VYFVRNYMDIQNDKKRGNIWKVDKNNVMTPVTNGLHADFSPTLSPDESKLAYISTASGSA 115 Query: 237 -LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 + + ++T + S + +S +GK S V+L Sbjct: 116 QIHIKWLNTGQTGQMTHLTGSPSNL---SWSPDGKMLAFSQFVKGTPKSP-VNLSGKPEG 171 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + ++ Y D + + G Q++V+ ++G ++++Q + W Sbjct: 172 AKWADSAIFIDDLFYRADGAGYI----PAGNNQIFVLSADGGTPRQLTQGEFNHGGSISW 227 Query: 355 SPQGDLIAFTKFSG-------EKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF 406 S I F+ + + + L + +P SP G+ + + Sbjct: 228 SSDSKAIVFSANRHPDSDLELTDDNVYKVDVASGEMLQLTDRIGPDNSPLVSPDGKLIAY 287 Query: 407 SRK---KDGDTGSKLYSIDLNGRNETLINT 433 ++LY +D NG + + Sbjct: 288 LGYDEKYTNYENTQLYIMDANGGVSRSLTS 317 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 79/257 (30%), Gaps = 56/257 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S++ ++S + S I G + + +SP+ + +A++ + Sbjct: 103 SKLAYISTASGSAQIHIK---WLNTGQTGQMTHLTGSPSNL--SWSPDGKMLAFSQFVKG 157 Query: 235 DIL---------------------------------------RVYLMDTRIDRAPKRIGN 255 +++++ + Sbjct: 158 TPKSPVNLSGKPEGAKWADSAIFIDDLFYRADGAGYIPAGNNQIFVLSADGGTPRQLTQG 217 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDI-------YSVDLQSNATERLTNTLFINISAS 308 + + +SS+ K + S + D+ Y VD+ S +LT+ + + S Sbjct: 218 EFNHGGSISWSSDSKAIVFSANRHPDSDLELTDDNVYKVDVASGEMLQLTDRIGPDNSPL 277 Query: 309 YSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD I + E QLY+M +NG + ++ + + S W+ + Sbjct: 278 VSPDGKLIAYLGYDEKYTNYENTQLYIMDANGGVSRSLTSEFDRSVGSIQWASDSKGVYL 337 Query: 364 TKFSGEKFAIGVMKKDG 380 + + + G Sbjct: 338 SYDDSGETYVAYQPLQG 354 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 23/220 (10%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL------RVYL 241 N + V+ DG R LT +S + + + ++ D VY Sbjct: 196 AGNNQIFVLSADGGTPRQLTQGEFNHGGSISWSSDSKAIVFSANRHPDSDLELTDDNVYK 255 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQKDEAMDIYSVDLQSNATER 296 +D + + + +P S +GK E +Y +D + Sbjct: 256 VDVASGEMLQ-LTDRIGPDNSPLVSPDGKLIAYLGYDEKYTNYENTQLYIMDANGGVSRS 314 Query: 297 LTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNG------SDQKRISQDKEASY 349 LT+ ++ S ++ DS + D G+ + G ++ + S Sbjct: 315 LTSEFDRSVGSIQWASDSKGVYLSYDDSGETYVAYQPLQGDRKIVADKVGGLAFGRPYSG 374 Query: 350 FDPVWSPQGDLIAFTKFSGEK-FAIGVMKKDGSQERLLVE 388 + + G +AFT + ++ I + K G + LL + Sbjct: 375 GEFDVANNGT-VAFTYSNPQRPADIAI--KKGDKATLLTQ 411 >gi|227539297|ref|ZP_03969346.1| tricorn family protease [Sphingobacterium spiritivorum ATCC 33300] gi|227240979|gb|EEI90994.1| tricorn family protease [Sphingobacterium spiritivorum ATCC 33300] Length = 1056 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 87/247 (35%), Gaps = 22/247 (8%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S+ P SP+ Q + ++ D D+ +V R+ +APR S Sbjct: 22 QSQASFFSYPTLSPDGQTIVFSY--DGDLWKV----AADGGLALRLTAMSGTEIAPRISP 75 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +GK S ++ MD+Y + L+ +LT + S+S DS I F S R + Sbjct: 76 DGKWLAFSSNQNGNMDVYIMPLEGGDIRQLTYHDAGDEVDSWSWDSKSIYFTSSRYNRFS 135 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-------FTKFSGE-----KFAIGV 375 Y + NG +R+ + + V +P G+L+ F I Sbjct: 136 SYKVAVNGGTAERMFPHYFNTIHNVVETPSGELLFNDSWESNFASNRKRYKGAFNPDILS 195 Query: 376 MKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 Q + + P+ + IF + + LYS +NG+ L P Sbjct: 196 YSPKQKQFKQYTDYAGKDFWPSV--DQKGAIFFASDEVNGEYNLYSF-VNGKKTGLTKFP 252 Query: 435 AYASDPQ 441 P Sbjct: 253 TSIKRPA 259 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 95/230 (41%), Gaps = 20/230 (8%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 N + +D I SP+ +K+A+ + + +++ D + +++ I+ Sbjct: 299 NKQQEFDVKDNISNV-DVSPDGKKMAFVSRGE-----LFVSDIE-GKFVRQMPGQGERIV 351 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFES 320 ++ + K L + ++ +++ ++LT L N ++ D + V+ S Sbjct: 352 EVKWLKDNKTLLFNQTYQGYLNWFTIAADGKEQAKQLTKDLRNNRIIEFNKDRTLGVYLS 411 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEKFAIGVMKK 378 G++++ + N + +D+ ++ + P +SP G+ I FT + + I + Sbjct: 412 ---GRDEVRTLDLNTLKSSTVVKDEIWAFQNSSPSFSPDGNYILFTAYRNFEQDIMLHNL 468 Query: 379 DGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKK------DGDTGSKLYSI 421 + L + PTWSP G+ + F+ + G + +Y + Sbjct: 469 KTNSTVNLTNTGVSELTPTWSPDGKYIYFASNRTKPSYPTGVQNASIYRM 518 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 90/243 (37%), Gaps = 23/243 (9%) Query: 216 EPRFSPNQQKVAY---ATYDDEDILRVYLMDTRIDRAPKRIGN------FRSMILAPRFS 266 P S N KV + D+ + +I + + N + I S Sbjct: 257 RPAVSANGTKVVFEKDYQLFLYDVATKKTIQPKIAISRNLVLNKQQEFDVKDNISNVDVS 316 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +GK+ + +++ D++ ++ + + D+ ++F +G Sbjct: 317 PDGKKMAFVSRG----ELFVSDIEGKFVRQMPGQGERIVEVKWLKDNKTLLFNQTYQGYL 372 Query: 327 QLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++G +Q K++++D + ++ L + + + + + + Sbjct: 373 NWFTIAADGKEQAKQLTKDLRNNRI-IEFNKDRTLGVYLS---GRDEVRTLDLNTLKSST 428 Query: 386 LVED----SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +V+D +P++SP G ++F+ ++ + L+++ N L NT P Sbjct: 429 VVKDEIWAFQNSSPSFSPDGNYILFTAYRNFEQDIMLHNLKTN-STVNLTNTGVSELTPT 487 Query: 442 WVG 444 W Sbjct: 488 WSP 490 >gi|309790683|ref|ZP_07685234.1| peptidase S41 [Oscillochloris trichoides DG6] gi|308227277|gb|EFO80954.1| peptidase S41 [Oscillochloris trichoides DG6] Length = 1083 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 14/177 (7%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D++SV ++ RLT + + SPD S + F EG ++YVM + G +R Sbjct: 21 EDDLWSVGVEGGVARRLTANPGEALRPALSPDGSWLAFTGRDEGVPEVYVMPAIGGPARR 80 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKF----AIGVMKKDGSQERLLVEDSNLQAPT 396 ++ W P G I F+ + + F + + G + RLL + + Sbjct: 81 LTFLGAQRTQVVGWMPDGQTIIFSSEASQPFAGMSQLYAVPHQGGEPRLLPTGPAVSM-S 139 Query: 397 WSPSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + P G ++I + R + G TG + G + LI+ + P W+G Sbjct: 140 YGPHGAAVIARNVTDLARWKRYRGGRTGDLWVDPNGQGAWQRLIHLDGNLAAPIWIG 196 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 29/265 (10%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + +G R LT + + P SP+ +A+ D E + VY+M A + Sbjct: 23 DLWSVGVEGGVARRLTANPGE-ALRPALSPDGSWLAFTGRD-EGVPEVYVMPAIGGPARR 80 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKD----EAMDIYSVDLQSNATERLTNTLFINISA 307 + +G+ + S + +Y+V Q L +S Sbjct: 81 LTFLGAQRTQVVGWMPDGQTIIFSSEASQPFAGMSQLYAVPHQGGEPRLLPTGPA--VSM 138 Query: 308 SYSPDSSQIV---------FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 SY P + ++ ++ R G+ + NG + + + P+W G Sbjct: 139 SYGPHGAAVIARNVTDLARWKRYRGGRTGDLWVDPNGQGAWQRLIHLDGNLAAPIW--IG 196 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 + I F I + DGS + D ++ P S GR +++ G+ Sbjct: 197 ERIFFVSDHEGVANIYSCRADGSDLHRHTDHTDFYVRHP--SSDGRRIVY------HAGA 248 Query: 417 KLYSIDLNGRNETLINTPAYASDPQ 441 L+ +D +I ++ PQ Sbjct: 249 DLWVLDPTNDQRRIIAVELHSPQPQ 273 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 41/316 (12%) Query: 146 SSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 + +W+++ H RI FVS ++ DG+++ Sbjct: 174 NGQGAWQRLIHL------DGNLAAPIWIGERIFFVS----DHEGVANIYSCRADGSDLHR 223 Query: 206 LTPSRDQILFEPRFSPNQQKVAYAT------YDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 T D + P S + +++ Y D + R + P+R F Sbjct: 224 HTDHTDFYVRHP--SSDGRRIVYHAGADLWVLDPTNDQRRIIAVELHSPQPQRKRRF--- 278 Query: 260 ILAPRF-------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 +AP F N ++V+ +++ A + N + D Sbjct: 279 -VAPEFFLDDYAIHPNATSLALTVRG----RAFTMGNWEGAVVQHGNEQGRTRLTCFLND 333 Query: 313 SSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 +++ SD EG+E L + +G + +R++ +P+G+L A T Sbjct: 334 GKRLLLLSDAEGEEALEIHSLDGATPPRRLAGLDIGRPLSLQPAPKGELAALTNQR---H 390 Query: 372 AIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSR-KKDGDTGSKLYSIDLNGRNE 428 + ++ D R L + A WSP GR L +S +L + +G Sbjct: 391 ELLLVDLDAGTLRSLDHSPNGRIYAAEWSPDGRWLAYSYPDTRRTRVIRLCEVS-SGAVH 449 Query: 429 TLINTPAYASDPQWVG 444 T+ T Y + P W Sbjct: 450 TITRTLLYDTSPTWDP 465 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 10/143 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRD---QILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + +L + DGA D + +P P + A E + L Sbjct: 341 SDAEGEEALEIHSLDGATPPRRLAGLDIGRPLSLQPA--PKGELAALTNQRHE----LLL 394 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV-DLQSNATERLTNT 300 +D + I A +S +G+ S + + ++ S A +T T Sbjct: 395 VDLDAGTLRSLDHSPNGRIYAAEWSPDGRWLAYSYPDTRRTRVIRLCEVSSGAVHTITRT 454 Query: 301 LFINISASYSPDSSQIVFESDRE 323 L + S ++ P+ + + F R+ Sbjct: 455 LLYDTSPTWDPEGNYLYFIGYRD 477 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---FRSMILAPRFSSNGKRALIS 275 F + +++ + D E + + P+R+ R + L P G+ A ++ Sbjct: 330 FLNDGKRLLLLS-DAEGEEALEIHSLDGATPPRRLAGLDIGRPLSLQPA--PKGELAALT 386 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFES-DREGKEQLYVMQS 333 Q+ ++ VDL + L ++ +A +SPD + + D + + + Sbjct: 387 NQR---HELLLVDLDAGTLRSLDHSPNGRIYAAEWSPDGRWLAYSYPDTRRTRVIRLCEV 443 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 + I++ P W P+G+ + F + Sbjct: 444 SSGAVHTITRTLLY-DTSPTWDPEGNYLYFIGYRD 477 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 ++ L ++D D +R L S + ++ +SP+ + +AY+ D + L + Sbjct: 387 NQRHELLLVDLDAGTLRSLDHSPNGRIYAAEWSPDGRWLAYSYPDTRRTRVIRLCEVSSG 446 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 A I +P + G +D Sbjct: 447 -AVHTITRTLLYDTSPTWDPEGNYLYFIGYRDFDP 480 >gi|186681693|ref|YP_001864889.1| hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] gi|186464145|gb|ACC79946.1| WD-40 repeat protein [Nostoc punctiforme PCC 73102] Length = 1212 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 74/454 (16%), Positives = 147/454 (32%), Gaps = 48/454 (10%) Query: 1 MSLRFFIAEELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPV-SIAFT--KFVS 57 ++LR ++ L + G + + +A S + + A + F+S Sbjct: 488 VALRDREQKQRERTKRLTFSGLAGGLVLALGLSGLAGIGWGNAEISQINAFAQSSDGFLS 547 Query: 58 IDELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVI 117 +D V V ++ F + + + K+T +++ N+LG + Sbjct: 548 LDGR-KAVESSVKAAVKMRGKFWVDANTRTQVKLTLLNTVHNVAAPNTLGGHAKEVQGIS 606 Query: 118 KEGKDRLRVE------FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 ++ +LWD K+I K S + + S D Sbjct: 607 FSPDGKMLASASDDNTVKLWDTTTGKEI--KTLTGHTNSV--LGISFSPD---------- 652 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 + + S N++ + D + FSP+ + +A A+ Sbjct: 653 ---------GKMLASASSDNTVKLWDTTTGKEIKTLTGHTNSVLGISFSPDGKMLASASA 703 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D+ V L DT + K + R+ + FS +GK S D + ++ Sbjct: 704 DN----TVKLWDTTTGKEIKTLTGHRNSVFGISFSPDGKMLA-SASADNTVKLWDT-TTG 757 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 + LT S+SPD + S + + + + + S D Sbjct: 758 KEIKTLTGHRNSVFGISFSPDGKMLASASF---DNTVKLWDTTTGKEIKTLTGHRNSVND 814 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKK 410 +SP G ++A + + G + + L N + ++SP+G+ L Sbjct: 815 ISFSPDGKMLA-SASDDNTVKLW-DTTTGKEIKTLTGHRNSVNDISFSPNGKMLA---SA 869 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D KL+ +TL +D + Sbjct: 870 SFDNTVKLWDTTTGKEIKTLTGHTNSVNDISFSP 903 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 106/308 (34%), Gaps = 40/308 (12%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+++ D V +LWD K+I H + + G Sbjct: 821 GKMLASASDDNTV--KLWDTTTGKEIKTLT-----------GHR--NSVNDISFSPNG-- 863 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + S N++ + D + + FSP+ + +A A+ D+ Sbjct: 864 --------KMLASASFDNTVKLWDTTTGKEIKTLTGHTNSVNDISFSPDGKMLASASGDN 915 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L DT + K + R+ + FS +GK S D + ++ Sbjct: 916 ----TVKLWDTTTGKEIKTLTGHRNSVNDISFSPDGKMLA-SASGDNTVKLWDT-TTGKE 969 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 + LT S+SPD + S G + + + + + + S Sbjct: 970 IKTLTGHTNSVNGISFSPDGKMLASAS---GDKTVKLWDTTTGKEIKTLTGHTNSVNGIS 1026 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 +SP G ++A SG+K G + + L +++ ++SP G+ L + Sbjct: 1027 FSPDGKMLA--SASGDKTVKLWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLASASS--- 1081 Query: 413 DTGSKLYS 420 D KL+ Sbjct: 1082 DNTVKLWD 1089 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 105/308 (34%), Gaps = 35/308 (11%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGII 189 LWD K+I K S I + S D + + GD ++ + Sbjct: 877 LWDTTTGKEI--KTLTGHTNSVNDI--SFSPD-GKMLASASGDNTVKLWDTTT------- 924 Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 G I+ LT R+ + + FSP+ + +A A+ D+ V L DT + Sbjct: 925 ----------GKEIKTLTGHRNSVN-DISFSPDGKMLASASGDN----TVKLWDTTTGKE 969 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 K + + + FS +GK S D+ + ++ + LT S+ Sbjct: 970 IKTLTGHTNSVNGISFSPDGKMLA-SASGDKTVKLWDT-TTGKEIKTLTGHTNSVNGISF 1027 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD + S G + + + + + + S +SP G ++A Sbjct: 1028 SPDGKMLASAS---GDKTVKLWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLASASSDNT 1084 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + L +++ ++SP G+ L + D KL+ +T Sbjct: 1085 VKLWDTTTTGKKIKTLTGHTNSVNGISFSPDGKMLASASS---DNTVKLWDTTTGKEIKT 1141 Query: 430 LINTPAYA 437 L + Sbjct: 1142 LTGHTNWV 1149 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+++ V +LWD K+I K S I + S D Sbjct: 905 GKMLASASGDNTV--KLWDTTTGKEI--KTLTGHRNSVNDI--SFSPD------------ 946 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + S N++ + D + FSP+ + +A A+ D Sbjct: 947 -------GKMLASASGDNTVKLWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLASASGDK 999 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L DT + K + + + FS +GK S D+ + ++ Sbjct: 1000 ----TVKLWDTTTGKEIKTLTGHTNSVNGISFSPDGKMLA-SASGDKTVKLWDT-TTGKE 1053 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP- 352 + LT S+SPD + S + + + + +K + + + Sbjct: 1054 IKTLTGHTNSVNGISFSPDGKMLASASS---DNTVKLWDTTTTGKKIKTLTGHTNSVNGI 1110 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP--TWSPSGRSLIFSRKK 410 +SP G ++A + + +E + ++SP G+ L + Sbjct: 1111 SFSPDGKMLASASSDNT---VKLWDTTTGKEIKTLTGHTNWVYGISFSPDGKMLASAST- 1166 Query: 411 DGDTGSKLYSIDLN 424 D KL+ +D + Sbjct: 1167 --DNTVKLWRLDFD 1178 >gi|300772906|ref|ZP_07082775.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759077|gb|EFK55904.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 1025 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 29/222 (13%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT-----ERLTN-----TLF 302 GN M ++P S +GK +KD ++D++ D + RLTN F Sbjct: 276 GNSGRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFSF 335 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLI 361 + + ++SPDS + F GK +L + + + + F + W+ GD + Sbjct: 336 LESAGTFSPDSRKFAFSVFSAGKNKLMTVDIATGKTLSVEAMGDITEFTNITWAADGDHV 395 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR--------KKDG 412 AF+ I + + L D + P++S G+S++FS + Sbjct: 396 AFSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQPSFSRDGKSIVFSTDRVALASDNRSV 455 Query: 413 DTGSKLYSIDLNGRNETLIN--------TPAYASDPQWVGFM 446 D L +D+ +N ++ P ++S+ + + F+ Sbjct: 456 DIPMNLAIVDVRTKNIQNLDIFPGANNLNPHFSSNGEQIYFL 497 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 89/238 (37%), Gaps = 24/238 (10%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN---------FR 257 T + ++ P SP+ + VA+ + D + ++L D + +++G+ F Sbjct: 275 TGNSGRMNVSPAISPDGKYVAFLSEKDMFSIDLFLADAHTGKVIRKLGSRLTNKDIDEFS 334 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASYSPDSSQ 315 + A FS + ++ SV + +VD+ + T + I + +++ D Sbjct: 335 FLESAGTFSPDSRKFAFSVFSAGKNKLMTVDIATGKTLSVEAMGDITEFTNITWAADGDH 394 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT----------K 365 + F + G +Y+ +++ D S F P +S G I F+ + Sbjct: 395 VAFSGLKNGHSDIYIYNLKTKKLDQLTND-VYSDFQPSFSRDGKSIVFSTDRVALASDNR 453 Query: 366 FSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + ++ + L +N P +S +G + F DG Y++ Sbjct: 454 SVDIPMNLAIVDVRTKNIQNLDIFPGANNLNPHFSSNGEQIYFLSNGDGYRNMYRYTV 511 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Query: 218 RFSPNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 FSP+ +K A++ + + + T A I F ++ ++++G Sbjct: 341 TFSPDSRKFAFSVFSAGKNKLMTVDIATGKTLSVEAMGDITEFTNIT----WAADGDHVA 396 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----------E 323 S K+ DIY +L++ ++LTN ++ + S+S D IVF +DR + Sbjct: 397 FSGLKNGHSDIYIYNLKTKKLDQLTNDVYSDFQPSFSRDGKSIVFSTDRVALASDNRSVD 456 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 L ++ + + + A+ +P +S G+ I F + +Q Sbjct: 457 IPMNLAIVDVRTKNIQNLDIFPGANNLNPHFSSNGEQIYFLSNGDGYRNMYRYTVASAQV 516 Query: 384 RLLVE 388 L + Sbjct: 517 EKLTD 521 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 92/271 (33%), Gaps = 32/271 (11%) Query: 122 DRLRVEFRLWDVKDRKQI--IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 D ++ L D K I +G + + D S G F+ Sbjct: 301 DMFSIDLFLADAHTGKVIRKLGSRLTNK------------DIDEFSFLESAGTFSPDSRK 348 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + SV S + V G + ++ + VA++ + + Sbjct: 349 FAFSVFSAGKNKLMTVDIATGKTLSVEAMGDITEFTNITWAADGDHVAFSGLKNGHS-DI 407 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----------DEAMDIYSVDL 289 Y+ + + + ++ N P FS +GK + S + D M++ VD+ Sbjct: 408 YIYNLKT-KKLDQLTNDVYSDFQPSFSRDGKSIVFSTDRVALASDNRSVDIPMNLAIVDV 466 Query: 290 QSNATERL-TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ++ + L N++ +S + QI F S+ +G +Y + ++++ Sbjct: 467 RTKNIQNLDIFPGANNLNPHFSSNGEQIYFLSNGDGYRNMYRYTVASAQVEKLTDYFTGI 526 Query: 349 YFDPVWSPQG-----DLIAFTKFSGEKFAIG 374 +SP D I ++ F +++ Sbjct: 527 SGITEYSPAMSISATDEIVYSYFKNNAYSVY 557 >gi|116624613|ref|YP_826769.1| periplasmic component of the Tol biopolymer transporter-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116227775|gb|ABJ86484.1| Periplasmic component of the Tol biopolymer transport system-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 538 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 19/195 (9%) Query: 253 IGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + + ++ +P S++G+ A + +D +++Y + S RLT T ++SP Sbjct: 38 LTSGAALTASPAISADGQLAAYASDRDARNLELYVQPIPSGMPVRLTRTPEDESEPAFSP 97 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 DS + F S++ G +YVM + G D K ++Q DP +SP G IA+ Sbjct: 98 DSGSLAFRSEKGGG-GIYVMPARGGDAKLLAQGGR----DPRYSPDGKWIAYWDQD---- 148 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 A V+ +G R + + P WSP G ++ + + + G Sbjct: 149 AAWVIPSNGGTARKIFATPGARHPIWSPDGALVLAQANNE-------FVVGAVGVAPAPA 201 Query: 432 NTPA--YASDPQWVG 444 P A PQW Sbjct: 202 GIPGRLQADSPQWTA 216 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 32/247 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 S + P S + Q AYA+ D L +Y+ P R+ Sbjct: 34 AFVPLTSGAALTASPAISADGQLAAYASDRDARNLELYVQPIPSG-MPVRLTRTPEDESE 92 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P FS + +K IY + + + L YSPD I + Sbjct: 93 PAFSPDSGSLAFRSEKGGGG-IYVMPARGGDAKLLAQGG---RDPRYSPDGKWIAYW--- 145 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK----K 378 ++ +V+ SNG ++I A + P+WSP G L+ + +F +G + Sbjct: 146 -DQDAAWVIPSNGGTARKIFATPGARH--PIWSPDGALVL--AQANNEFVVGAVGVAPAP 200 Query: 379 DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE------TLIN 432 G RL +P W+ G +F ++ G ++ I L+ R + + Sbjct: 201 AGIPGRL-----QADSPQWTAGG---LFFVERTG-WVRNIWRIPLDARGRATAAAMRVTS 251 Query: 433 TPAYASD 439 P D Sbjct: 252 GPESIGD 258 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 93/271 (34%), Gaps = 48/271 (17%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLM-DTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P+++ T +I R+ L R A R+ + I S +G+ + Sbjct: 212 PQWTAGGLFFVERTGWVRNIWRIPLDARGRATAAAMRVTSGPESIGDVAVSRDGRILFTA 271 Query: 276 VQKDEAMDIYSVDLQSNAT----ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 ++ + +D + +RLT+ + S D +++++ R G +QL++ Sbjct: 272 GSQNFQVWGLPLDANTGKPAGVPQRLTDGAATLEHPAISADGRLLLYDAQRYGLQQLFLR 331 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLI------AFTKFSGEKF-------------A 372 + +R++ K A + G +I + K Sbjct: 332 DLASGE-ERVAAAKPAGVSGGQFLRGGRIIYGSGGDVYVTGESRKLAAGGRPLAVDRKEE 390 Query: 373 IGVMKKDG--------SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I +++ S ER+ + + + +SP R + FS TG ++Y Sbjct: 391 IALVRSPSSLDALNLKSLERVPLLRAAISQAAFSPDDRWIAFS------TGGRIYRAPNR 444 Query: 425 GRNETLINT---------PAYASDPQWVGFM 446 G E + P ++ D + F+ Sbjct: 445 GLQEIPRSEWLPVAAGDKPRFSPDGSLLYFV 475 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 36/223 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRA---PKRIGNFRSMILAPRFSSNGKRALI 274 S + ++ + + +D + P+R+ + + + P S++G+ L Sbjct: 260 AVSRDG-RILFTAGSQNFQVWGLPLDANTGKPAGVPQRLTDGAATLEHPAISADGRLLLY 318 Query: 275 SVQKDEAMDIYSVDLQSNATE------------------RLTNTLFINI-----SASYSP 311 Q+ ++ DL S R+ ++ S + Sbjct: 319 DAQRYGLQQLFLRDLASGEERVAAAKPAGVSGGQFLRGGRIIYGSGGDVYVTGESRKLAA 378 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK--EASYFDPVWSPQGDLIAFTKFSGE 369 + + E + + K + + A+ +SP IAF+ Sbjct: 379 GGRPLAVDRKEEIALVRSPSSLDALNLKSLERVPLLRAAISQAAFSPDDRWIAFS----T 434 Query: 370 KFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRK 409 I G QE E + P +SP G L F Sbjct: 435 GGRIYRAPNRGLQEIPRSEWLPVAAGDKPRFSPDGSLLYFVAD 477 >gi|114798295|ref|YP_761023.1| amidohydrolase family protein [Hyphomonas neptunium ATCC 15444] gi|114738469|gb|ABI76594.1| amidohydrolase family protein [Hyphomonas neptunium ATCC 15444] Length = 1077 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 24/201 (11%) Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 +L+ S G + D DIY++ + RLT+ + ++ +SPD Sbjct: 60 TDEGSLLSLDVSPAGDVLVF----DMLGDIYTLPVSGGKAARLTSGMAMDSQPVWSPDGK 115 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKF--SGEKF 371 ++F SDR G E L++M ++G + ++IS D + P W+P G I T++ + Sbjct: 116 AVLFVSDRSGAENLWLMDADGGNPRQISLYDDNPVFVSPEWAPDGKSILVTRYWADRNAY 175 Query: 372 AIGVMKK---DGSQERLLVEDSNLQAPT-------WSPSGRSLIFSRKKDGDTGSK---- 417 + + D + + + A + +S G ++ + K+GD Sbjct: 176 ELWRFRPVAGDMGEVLRATQGGDGSAVSTSSLGARYSADGGAIYLASLKEGDPAFNALAA 235 Query: 418 --LYSID-LNGRNETLINTPA 435 + ID + G ++ A Sbjct: 236 WGIVRIDPVTGEEAAVLPAGA 256 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 33/227 (14%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP + + D +Y + R+ + +M P +S +GK L + Sbjct: 71 SPAGDVLVFDMLGD-----IYTLPV-SGGKAARLTSGMAMDSQPVWSPDGKAVLFVSDRS 124 Query: 280 EAMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIV---FESDREGKE--QLYVMQ 332 A +++ +D +++ + + +S ++PD I+ + +DR E + + Sbjct: 125 GAENLWLMDADGGNPRQISLYDDNPVFVSPEWAPDGKSILVTRYWADRNAYELWRFRPVA 184 Query: 333 SNGSDQKRISQDKEASYFDPV-----WSPQGDLIAFTKFSGEK--------FAIGVMKK- 378 + + R +Q + S +S G I + I + Sbjct: 185 GDMGEVLRATQGGDGSAVSTSSLGARYSADGGAIYLASLKEGDPAFNALAAWGIVRIDPV 244 Query: 379 DGSQERLLVEDSNLQA------PTWSPSGRSLIFSRKKDGDTGSKLY 419 G + +L + ++ P SP G+SL+F +++G T K+ Sbjct: 245 TGEEAAVLPAGAAGESVVPRFRPAVSPDGQSLVFGERREGVTLLKVM 291 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 102/281 (36%), Gaps = 38/281 (13%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 + + G LT S + +P +SP+ + V + + D ++LMD P+ Sbjct: 84 DIYTLPVSGGKAARLT-SGMAMDSQPVWSPDGKAVLFVS-DRSGAENLWLMDAD-GGNPR 140 Query: 252 RIG--NFRSMILAPRFSSNGKRALIS--VQKDEAMDIYSV-DLQSNATERLTNTLFINIS 306 +I + + ++P ++ +GK L++ A +++ + + E L T + S Sbjct: 141 QISLYDDNPVFVSPEWAPDGKSILVTRYWADRNAYELWRFRPVAGDMGEVLRATQGGDGS 200 Query: 307 --------ASYSPDSSQIVFESDREGKE--------QLYVMQSNGSDQKRISQDKEAS-- 348 A YS D I S +EG + + ++ + A Sbjct: 201 AVSTSSLGARYSADGGAIYLASLKEGDPAFNALAAWGIVRIDPVTGEEAAVLPAGAAGES 260 Query: 349 ---YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSL 404 F P SP G + F + + VM + R L E D + + + Sbjct: 261 VVPRFRPAVSPDGQSLVFGERREGVTLLKVMHLESGAVRTLGEVDPDAVLASLTHD---- 316 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 +R G LY ++ GR + I A++P V F Sbjct: 317 AIARYDFSADGKALY-VNRQGRIDR-IALDGGAAEP--VPF 353 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 24/190 (12%) Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES- 320 +P S +G + + +Y L+ A + S+S D + + F S Sbjct: 383 SPELSPDGAALVFTA----LGRLYVQALEGGAPRLVRGEGETGYHPSWSADGAALAFVSW 438 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK----------FSGEK 370 + +++ ++IS + A Y PV++P G I + + Sbjct: 439 TKAAGGDVWIAPQADGPARKISAET-AFYTHPVFTPDGSAIVVVRSPAETRRRTYMEYGQ 497 Query: 371 F---AIGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + VM DG+ R+L P ++ G LI G + D R Sbjct: 498 WREAELVVMPLDGAPSRVLAAGRMGGTPHFAADPGEVLI----NTGKGVEAVSLADGARR 553 Query: 427 NETLINTPAY 436 T P + Sbjct: 554 VVTQAVGPGW 563 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 53/272 (19%) Query: 218 RFSPNQQKVAYATYDDEDIL--------RVYLMDTRIDRAPKRIGNFRSMILAPRF---- 265 R+S + + A+ + D V + + A + PRF Sbjct: 210 RYSADGGAIYLASLKEGDPAFNALAAWGIVRIDPVTGEEAAVLPAGAAGESVVPRFRPAV 269 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS----------YSPDSSQ 315 S +G+ + +++ + + L+S A L + AS +S D Sbjct: 270 SPDGQSLVFGERREGVTLLKVMHLESGAVRTLGEVDPDAVLASLTHDAIARYDFSADGKA 329 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASY----------------------FDPV 353 + +R+G ++ + +G + + + S P Sbjct: 330 LY--VNRQG--RIDRIALDGGAAEPVPFTADVSQDLGPLGRHPARIEGGAVRARLIQSPE 385 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDG 412 SP G + FT + V +G RL+ E P+WS G +L F Sbjct: 386 LSPDGAALVFTALG----RLYVQALEGGAPRLVRGEGETGYHPSWSADGAALAFVSWTKA 441 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 G + +G + A+ + P + Sbjct: 442 AGGDVWIAPQADGPARKISAETAFYTHPVFTP 473 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 75/245 (30%), Gaps = 37/245 (15%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V +G R L + + P +S + +A+ ++ V++ + D + Sbjct: 400 RLYVQALEGGAPR-LVRGEGETGYHPSWSADGAALAFVSWTKAAGGDVWI-APQADGPAR 457 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQ-------------KDEAMDIYSVDLQSNATERLT 298 +I + P F+ +G ++ + ++ + L + L Sbjct: 458 KISAETAFYTHPVFTPDGSAIVVVRSPAETRRRTYMEYGQWREAELVVMPLDGAPSRVLA 517 Query: 299 NTLFINISASYSPD--------SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 ++ D + S +G ++ + A+ Sbjct: 518 AGRMGGT-PHFAADPGEVLINTGKGVEAVSLADGARRVVTQAV---GPGWYFSEGPAAAD 573 Query: 351 DPVWSPQGDL-IAFTKFSGEKFAIG-------VMKKDGSQERLLVEDSNLQAPTWSPSGR 402 D SP G +A + +G + G+ +L ++ WS G+ Sbjct: 574 DLRVSPDGQWALAQIAHQLHLYRLGSAGETFDLSNPSGAHVQLTDIGADYFG--WSEDGQ 631 Query: 403 SLIFS 407 + ++ Sbjct: 632 EIYWA 636 >gi|332829130|gb|EGK01794.1| hypothetical protein HMPREF9455_01942 [Dysgonomonas gadei ATCC BAA-286] Length = 1082 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 70/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D IY V ++T + +SPDS I F SDRE Sbjct: 30 TISPDGNQIAFCYKGD----IYKVSASGGRAMQITTHPGYDTRPVWSPDSKSIAFSSDRE 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----FSGEKF------A 372 G +Y++ + G +R++ Y PV + + ++ +F Sbjct: 86 GSLDVYLVSAEGGAPQRLTTHSAGEY--PVAFRDNERLLYSASIIQDVKDGEFPSGLFAQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF----------SRKKDGDTGSKLYSID 422 I + G + L ++ + PSG +++ + L+ D Sbjct: 144 IYEINTSGGRPS-LFSSLTMEDLSIDPSGTKILYHDRKGYEDPWRKHHQSSITRDLWLCD 202 Query: 423 LNGRN--ETLINTPAYASDPQWVG 444 L+G + L +P W Sbjct: 203 LSGERTYKKLTTFRGEDRNPVWAA 226 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 81/223 (36%), Gaps = 35/223 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++A+ DI +V + +I P +S + K S Sbjct: 30 TISPDGNQIAFCY--KGDIYKV----SASGGRAMQITTHPGYDTRPVWSPDSKSIAFSSD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----REGKE------ 326 ++ ++D+Y V + A +RLT ++ D+ ++++ + ++G+ Sbjct: 84 REGSLDVYLVSAEGGAPQRLTTHSAGEYPVAF-RDNERLLYSASIIQDVKDGEFPSGLFA 142 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 Q+Y + ++G R S + D P G I + S + Sbjct: 143 QIYEINTSGG---RPSLFSSLTMEDLSIDPSGTKILYHDRKGYEDPWRKHHQSSITRDLW 199 Query: 375 VMKKDG--SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + G + ++L + P W+ G++ + ++ G Sbjct: 200 LCDLSGERTYKKLTTFRGEDRNPVWAADGQNFYYLSEQSGSFN 242 Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 105/291 (36%), Gaps = 57/291 (19%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK-RIGNFRSM 259 +R+L+ S+ L FS + + Y + + +V + ++ K + NF + Sbjct: 262 HPVRFLSSSKQGKLC---FSYDGE--IYTMNEGQQPQKVNIQIATDNQENKLKYINFSTG 316 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +GK ++ D ++ ++ T R+TNT + S+SPD +++ Sbjct: 317 AREMAVSPSGKEVAFVIRGD----VFVASVEYGTTRRITNTPEQERNVSFSPDGRSVLYA 372 Query: 320 SDREGKEQLYVMQSNGSD-----------QKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 ++R G +Y + +++++ AS F P++SP G IA+ + Sbjct: 373 AERNGLWNVYQSTLTHKEDESFVYAKDFKEEQLTNSTLAS-FQPLYSPDGKEIAYLENRT 431 Query: 369 EKFAIGVMKKDGSQERLLVEDS-------NLQAPTWSPSGRSLIFSRKKDGDTGS---KL 418 + V+ + R +++ Q W+P + L+ G S L Sbjct: 432 T---LRVLNLASKEIRTILDGKFNYSYADGDQWFRWAPDSKWLLTQYIGIGGWNSTDAAL 488 Query: 419 YSIDLNGRNETLINTP----------------------AYASDPQWVGFMD 447 D +G L + Y S W +MD Sbjct: 489 VKADGSGELTNLTESGYSDANPRFVQDGKAMIWFSDRAGYRSHGSWGAYMD 539 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 97/332 (29%), Gaps = 85/332 (25%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G +T P +SP+ + +A+++ D E L VYL+ Sbjct: 42 YKGDIYKVSASGGRAMQITT-HPGYDTRPVWSPDSKSIAFSS-DREGSLDVYLVSAE-GG 98 Query: 249 APKRIGNFRSMILAPRFS------------------------------------------ 266 AP+R+ + F Sbjct: 99 APQRLTTHSAGEYPVAFRDNERLLYSASIIQDVKDGEFPSGLFAQIYEINTSGGRPSLFS 158 Query: 267 ----------SNGKRALISVQKDE------------AMDIYSVDLQS-NATERLTNTLFI 303 +G + L +K D++ DL ++LT Sbjct: 159 SLTMEDLSIDPSGTKILYHDRKGYEDPWRKHHQSSITRDLWLCDLSGERTYKKLTTFRGE 218 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL--- 360 + + ++ D + S++ G +Y N S +++ ++ S QG L Sbjct: 219 DRNPVWAADGQNFYYLSEQSGSFNIYKSGLNVSTPVKLTNLEKHPVRFLSSSKQGKLCFS 278 Query: 361 ---IAFTKFSGE-----KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 +T G+ I ++ + + + SPSG+ + F + D Sbjct: 279 YDGEIYTMNEGQQPQKVNIQIATDNQENKLKYINFSTGAREM-AVSPSGKEVAFVIRGDV 337 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 S Y G + NTP + + Sbjct: 338 FVASVEY-----GTTRRITNTPEQERNVSFSP 364 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 9/97 (9%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 SP G+ IAF I + G + ++ P WSP +S+ FS + Sbjct: 29 CTISPDGNQIAFCYKGD----IYKVSASGGRAMQITTHPGYDTRPVWSPDSKSIAFSSDR 84 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 +G +Y + G + T + P V F D Sbjct: 85 EGS--LDVYLVSAEGGAPQRLTTHSAGEYP--VAFRD 117 >gi|326491569|dbj|BAJ94262.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 654 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 117/370 (31%), Gaps = 71/370 (19%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 L+D++ + F + + H Y G F V Sbjct: 277 HIELFDLETEQ------FTAVTSLLNPELHH-----YNPFFSPSGGRLGYHRFRGAGVQG 325 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + L + ++IR L P FSP+ + A + + R Sbjct: 326 DSMIPYLQPVRSPVSSIRMLRVHGS----FPSFSPDAKHFALNGDFFKSPG---VTILRA 378 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQK--------------------DEAMDIYS 286 D + + + + + +S + + D Sbjct: 379 DGSKRWVLAKQPNLFYTSWSPTESGVVFTSIGPIFETPKATVRVARIEFDPSGLTDDRGD 438 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ--KRISQD 344 VD+ R + + SP +VF S R G + LY++ + ++ +R++ D Sbjct: 439 VDVAVKELTR--PEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYIVDAARGEETIRRVT-D 495 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEK-----FAIGVMKKDGSQERLL----------VED 389 E P WSP G+LIAF+ E F+I +++ DG+ R + + Sbjct: 496 GEWIDTMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTGLRRVHVAGPAGSAEADK 555 Query: 390 SNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLINTPAY- 436 + +SP G+ L+F+ G LY L+G + AY Sbjct: 556 ERINHVCFSPDGQWLLFTATLGGVMAEPISGPNQFQPYGDLYVCRLDGSGVLRLTCNAYE 615 Query: 437 ASDPQWVGFM 446 P W + Sbjct: 616 NGTPTWGPAL 625 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 103/312 (33%), Gaps = 46/312 (14%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD---- 232 I + L ++ + + + + P FSP+ ++ Y + Sbjct: 264 IAVATRRKGLAKRHIELFDLETEQFTAVTSLLNPELHHYNPFFSPSGGRLGYHRFRGAGV 323 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 D + YL R + R+ P FS + K ++ ++ + + + Sbjct: 324 QGDSMIPYLQPVRSPVSSIRMLRVHG--SFPSFSPDAKHFALNGDFFKSPGVTILRADGS 381 Query: 293 ATERLTNTLFINISASYSPDSSQIVFES------DREGKEQLYVMQSNGSD--------- 337 L + + S+SP S +VF S + ++ ++ + S Sbjct: 382 KRWVLAKQPNLFYT-SWSPTESGVVFTSIGPIFETPKATVRVARIEFDPSGLTDDRGDVD 440 Query: 338 --QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQ 393 K +++ + + P SP G + F + ++ +E R + + + Sbjct: 441 VAVKELTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYIVDAARGEETIRRVTDGEWID 500 Query: 394 -APTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPA-------------- 435 P+WSP G + FS + + +Y + +G ++ Sbjct: 501 TMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTGLRRVHVAGPAGSAEADKERINH 560 Query: 436 --YASDPQWVGF 445 ++ D QW+ F Sbjct: 561 VCFSPDGQWLLF 572 Score = 47.3 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 18/185 (9%) Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD-SSQIVFESDREGKEQLYVM 331 + SV + + SV A R T+ + +N +A ++ D ++ F S+R G L++ Sbjct: 25 VFSVAVPQTPE--SVSAAGLAERRHTDGVSVNFNAQFADDVGEEVAFVSERTGSAGLFLC 82 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI-----GVMKKDGSQE--- 383 + + E S F + +G + F + A V + E Sbjct: 83 RPESERAVPL-PVVEGSLFHDRPAVRGGRLYFVSSHEKPAAWFRSWAAVYATELGSEETV 141 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL------YSIDLNGRNETLINTPAYA 437 R+ + +P S SG L + + ++ + A Sbjct: 142 RVTPQGVADMSPAVSTSGELLAVASYGERPWAFDFHELETEVAVFRAADPARRVVVAARG 201 Query: 438 SDPQW 442 P W Sbjct: 202 GWPTW 206 >gi|167765001|ref|ZP_02437122.1| hypothetical protein BACSTE_03395 [Bacteroides stercoris ATCC 43183] gi|167697670|gb|EDS14249.1| hypothetical protein BACSTE_03395 [Bacteroides stercoris ATCC 43183] Length = 1088 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 40/173 (23%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G + + D IY V + +LT S +SPD QI F SDR+G Sbjct: 31 SPDGTEIVFCYKGD----IYKVSAKGGTATQLTTQESYESSPVWSPDGKQIAFASDRQGN 86 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 ++VM S+G +R++ + A ++P G I F+ + GS Sbjct: 87 FDVFVMPSDGGAAQRLTTNS-AGEIPSAFTPDGKYILFSA--------AIQDPAGSAL-- 135 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPAYA 437 P+ ++LY + GR E ++ TPA A Sbjct: 136 --------FPS----------------PAMTELYKVPATGGRTEQVLGTPAEA 164 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 36/228 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++ + DI +V + ++ S +P +S +GK+ + + Sbjct: 30 ISPDGTEIVFCY--KGDIYKV----SAKGGTATQLTTQESYESSPVWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES---DREGK--------EQ 327 D++ + A +RLT I ++++PD I+F + D G + Sbjct: 84 QGNFDVFVMPSDGGAAQRLTTNSAGEIPSAFTPDGKYILFSAAIQDPAGSALFPSPAMTE 143 Query: 328 LYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 LY + + G +++ EA FD GD+ + S I Sbjct: 144 LYKVPATGGRTEQVLGTPAEALCFDKT----GDMFFYQDQKGFEDQWRKHHTSSITRDIW 199 Query: 375 VMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + + L + P SP G++L F +++G + +YS+ Sbjct: 200 MYDCRTEKHTNLTRHAGEDRNPVLSPDGQTLYFLSERNGGS-FNVYSL 246 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 97/260 (37%), Gaps = 32/260 (12%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +R+L+ S + L + + + Y D +V + R DR F + Sbjct: 263 HPVRFLSISGNGTLC---YGYDGE--IYTQQDGAAPQKVQIEIIRDDRPDTARLTFTNGA 317 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + S +GK+ + +++ T+++T+T S++PD+ + + S Sbjct: 318 TSATVSPDGKQVAFIARG----EVFVTSADYATTKQITHTPAGESGLSFAPDNRTLAYAS 373 Query: 321 DREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R G QLY+ + +++ + P +SP G +AF + + Sbjct: 374 ERNGNWQLYLAKIVRKEDPNFPNATIVEEEALLPSATVERAFPQFSPDGKELAFIE---D 430 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDTGSKLYSI 421 + + V+ D + R + + S + WSP G+ L F + D S + + Sbjct: 431 RTRLMVVNLDTKKVRQITDGSTWYSTDGGFDYAWSPDGKWFTLEFIGNRH-DPYSDIGLV 489 Query: 422 DLNGRNETLINTPAYASDPQ 441 G + + T + Sbjct: 490 SAQGNSPIINLTNSGYMSGS 509 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ + + + K+I + + F+ + + + + Sbjct: 321 TVSPDGKQVAFIARGE------VFVTSADYATTKQITHTPAGESGLSFAPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 ++ +Y + N + +SPD ++ F DR Sbjct: 375 RNGNWQLYLAKIVRKEDPNFPNATIVEEEALLPSATVERAFPQFSPDGKELAFIEDRT-- 432 Query: 326 EQLYVMQSNGSDQKRISQDKEASY----FDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ FD WSP G + F + + IG++ Sbjct: 433 -RLMVVNLDTKKVRQITDGSTWYSTDGGFDYAWSPDGKWFTLEFIGNRHDPYSDIGLVSA 491 Query: 379 DGSQERL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 G+ + L + +P ++ G +++F ++ G Sbjct: 492 QGNSPIINLTNSGYMSGSPRFALDGNAILFKTERYG 527 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 7/89 (7%) Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 SP G I F I + G L + ++ P WSP G+ + F+ + G Sbjct: 30 ISPDGTEIVFCYKGD----IYKVSAKGGTATQLTTQESYESSPVWSPDGKQIAFASDRQG 85 Query: 413 DTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + ++ + +G + T + P Sbjct: 86 NF--DVFVMPSDGGAAQRLTTNSAGEIPS 112 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 101/273 (36%), Gaps = 43/273 (15%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-- 263 L PS P+FSP+ +++A+ L V +DT+ R + S Sbjct: 405 LLPSATVERAFPQFSPDGKELAFIEDRTR--LMVVNLDTKKVRQITDGSTWYSTDGGFDY 462 Query: 264 RFSSNGKRA---LISVQKDEAMDIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFE 319 +S +GK I + D DI V Q N+ LTN+ +++ S ++ D + I+F+ Sbjct: 463 AWSPDGKWFTLEFIGNRHDPYSDIGLVSAQGNSPIINLTNSGYMSGSPRFALDGNAILFK 522 Query: 320 SDREG-----------KEQLYVMQSNGSDQKRISQDKE------ASYFDPVWSPQ----- 357 ++R G L + + D+ +S++ + S Sbjct: 523 TERYGMRAHASWGSQDDAMLVFLNQDAYDKYCLSKEDYELRKELEAEQKKAQSKDTAKGK 582 Query: 358 -------GDLIAFTKFSGEKFAIGV--MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 G A + I V + RL S++ + S G +L + Sbjct: 583 KGSKKDAGQEKAADDDKAQVKDITVELKNMEDRMVRLTPNSSDMGSVIISKDGETLYYFA 642 Query: 409 KKDGDTGSKLYSIDLNGRNETLIN--TPAYASD 439 +G G L+ +DL ++ L++ +AS Sbjct: 643 AFEG--GYDLWKMDLRKKDTRLLHKMDAGWASM 673 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 7/48 (14%) Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVG 444 SP G ++F K +Y + G T + T +Y S P W Sbjct: 31 SPDGTEIVFCYK------GDIYKVSAKGGTATQLTTQESYESSPVWSP 72 >gi|145237008|ref|XP_001391151.1| hypothetical protein ANI_1_1414064 [Aspergillus niger CBS 513.88] gi|134075616|emb|CAK39282.1| unnamed protein product [Aspergillus niger] Length = 681 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 114/320 (35%), Gaps = 63/320 (19%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 + +F+ + G + L + + DG+N R L S + FSP+ + + + + + Sbjct: 65 QKGVFMMNRIAPGT--SELYIANTDGSNERPLL-SNPVYEYHASFSPDVEWITFTSERNG 121 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNA 293 D + + ++ + S NG+ A S + +I+ +DLQ+ A Sbjct: 122 DGNSDIYRVRTNGSDLQELVATPAVEDSVVISPNGRLAAYVSTANNMKANIWILDLQTGA 181 Query: 294 TERLTNTL--FINIS-------ASYSPDSSQIVFESDRE------GKEQ----------- 327 LTNT N S ++SPD I F SDR G Sbjct: 182 QWNLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSDRNTQWDGHGVPTFLGRTGWETTQ 241 Query: 328 ---LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SGEKFAIG--------- 374 LY ++ NGSD ++I S P WS G I + + + + Sbjct: 242 ELSLYAIRPNGSDFRQIISKPYYSLGSPKWSADGKRIVYYEMTREDTYNAHRPETITTAN 301 Query: 375 --VMKKD---GSQERLLVEDSNL-QAPTWSPSGRSLIFS----RKKDGDTGSKLYSIDLN 424 +M D G+ R+ V S + Q P + ++ ++ + T + LY Sbjct: 302 STIMSVDFETGTDVRVEVAGSGVKQFPQYLDKNGTIAYTLKGGTSEGFYTTAGLY----- 356 Query: 425 GRNETLINTPAYASDPQWVG 444 + T A P W Sbjct: 357 -----VNTTSATLRSPAWSP 371 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 36/211 (17%) Query: 269 GKRALISVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--EG 324 G++ + + + ++Y + + L + AS+SPD I F S+R +G Sbjct: 64 GQKGVFMMNRIAPGTSELYIANTDGSNERPLLSNPVYEYHASFSPDVEWITFTSERNGDG 123 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGSQE 383 +Y +++NGSD + + A V SP G L A+ + K I ++ + Sbjct: 124 NSDIYRVRTNGSDLQELV-ATPAVEDSVVISPNGRLAAYVSTANNMKANIWILDLQTGAQ 182 Query: 384 RLLVEDSNLQA----------PTWSPSGRSLIFSRKKD------------GDTGSK---- 417 L A P WSP G + FS ++ G TG + Sbjct: 183 WNLTNTPTTAANSSLMESYLRPAWSPDGEWIAFSSDRNTQWDGHGVPTFLGRTGWETTQE 242 Query: 418 --LYSIDLNGRN-ETLINTPAYA-SDPQWVG 444 LY+I NG + +I+ P Y+ P+W Sbjct: 243 LSLYAIRPNGSDFRQIISKPYYSLGSPKWSA 273 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 103/312 (33%), Gaps = 52/312 (16%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGA--NIRYLTPSRDQILFEPRFSPNQQKVAY- 228 + F +G I +L +G + L P +SP+ ++V Y Sbjct: 320 AGSGVKQFPQYLDKNGTIAYTLKGGTSEGFYTTAGLYVNTTSATLRSPAWSPDGKQVVYE 379 Query: 229 --ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 ++Y D+ D + S +R I+ ++ I + Sbjct: 380 KSTWSIRSGYKQLYSWDSDWDYRFTDVFPQVSHQ---------ERVAITQKQLGNSSIVT 430 Query: 287 VDLQSNATERL----TNTLFINIS--------ASYSPDSSQIVF-------ESDREGKEQ 327 ++ + + T + S+SP +VF + G Sbjct: 431 LNTTGGDLQLVYDPSTADFVSDDETTGLSAYQPSWSPCGEWLVFGVGFWFETREASGGW- 489 Query: 328 LYVMQSNGSDQKR-------ISQDKEASYFDPVWSPQGDLIAF--------TKFSGEKFA 372 + +NGS + I++D + P +SP G + + T + + Sbjct: 490 IVRATANGSYSEVLVNSSYSITEDGALNSGFPSFSPDGKKVVYRVWGADTATYGNASEIG 549 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + V+ + + +L + + P +SP G ++F+RK + +I +G + ++ Sbjct: 550 LRVLDLETRKTTVLTTEWD-NLPQFSPDGELILFTRKTS-TYNYDVCTIRPDGTDLRVLT 607 Query: 433 TPA-YASDPQWV 443 + + W Sbjct: 608 SSGANDAHAVWS 619 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 123/365 (33%), Gaps = 101/365 (27%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + D + F+ + + SL + +G++ R + L P++S + +++ Y Sbjct: 222 QWDGHGVPTFLGRTGWETTQELSLYAIRPNGSDFRQIISKPYYSLGSPKWSADGKRIVYY 281 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS-VD 288 ED + P+ I S I++ F + G + V +D Sbjct: 282 EMTREDTYNAH--------RPETITTANSTIMSVDFET-GTDVRVEVAGSGVKQFPQYLD 332 Query: 289 LQSNATERL----------TNTLFINI------SASYSPDSSQIVFE----SDREGKEQL 328 L T L++N S ++SPD Q+V+E S R G +QL Sbjct: 333 KNGTIAYTLKGGTSEGFYTTAGLYVNTTSATLRSPAWSPDGKQVVYEKSTWSIRSGYKQL 392 Query: 329 YVMQSN------------------------------------GSDQKRISQDKEASY--- 349 Y S+ G D + + A + Sbjct: 393 YSWDSDWDYRFTDVFPQVSHQERVAITQKQLGNSSIVTLNTTGGDLQLVYDPSTADFVSD 452 Query: 350 --------FDPVWSPQGDLIAF-------TKFSGEKFAIGVMKKDGSQERLLVEDS---- 390 + P WSP G+ + F T+ + + + +GS +LV S Sbjct: 453 DETTGLSAYQPSWSPCGEWLVFGVGFWFETREASGGWIVRA-TANGSYSEVLVNSSYSIT 511 Query: 391 -----NLQAPTWSPSGRSLIF------SRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 N P++SP G+ +++ + + L +DL R T++ T + + Sbjct: 512 EDGALNSGFPSFSPDGKKVVYRVWGADTATYGNASEIGLRVLDLETRKTTVLTTE-WDNL 570 Query: 440 PQWVG 444 PQ+ Sbjct: 571 PQFSP 575 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 98/280 (35%), Gaps = 41/280 (14%) Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR--DQIL 214 +D Q E+ + L S V L ++ D + +++ Sbjct: 402 RFTDVFPQVSHQERVAITQKQLGNSSIVTLNTTGGDLQLV-YDPSTADFVSDDETTGLSA 460 Query: 215 FEPRFSPNQQKVAYA---TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--------- 262 ++P +SP + + + ++ + +++ + + + S + Sbjct: 461 YQPSWSPCGEWLVFGVGFWFETREASGGWIVRATANGSYSEVLVNSSYSITEDGALNSGF 520 Query: 263 PRFSSNGKRALISVQKDEAMD--------IYSVDLQSNATERLTNTLFINISASYSPDSS 314 P FS +GK+ + V + + +DL++ T LT + +SPD Sbjct: 521 PSFSPDGKKVVYRVWGADTATYGNASEIGLRVLDLETRKTTVLTTE--WDNLPQFSPDGE 578 Query: 315 QIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA- 372 I+F + ++ +G+D + ++ A+ VWS G ++ T G +F Sbjct: 579 LILFTRKTSTYNYDVCTIRPDGTDLRVLTSSG-ANDAHAVWSQDGRIMWSTGMYGFRFEC 637 Query: 373 ------------IGVMKKDGSQERLLVED-SNLQAPTWSP 399 + +M DG ++L+ P + P Sbjct: 638 ALYGDTFQPYGQVMIMDADGGNKKLMTNSMWEDSMPLFLP 677 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 23/154 (14%) Query: 313 SSQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSG 368 + VF +R G +LY+ ++GS+++ + + Y +SP + I FT + Sbjct: 64 GQKGVFMMNRIAPGTSELYIANTDGSNERPLLSNPVYEYHA-SFSPDVEWITFTSERNGD 122 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGR 426 I ++ +GS + LV ++ + SP+GR + + + + ++ +DL G Sbjct: 123 GNSDIYRVRTNGSDLQELVATPAVEDSVVISPNGRLAAYVSTAN-NMKANIWILDLQTGA 181 Query: 427 NETLINTP---------------AYASDPQWVGF 445 L NTP A++ D +W+ F Sbjct: 182 QWNLTNTPTTAANSSLMESYLRPAWSPDGEWIAF 215 >gi|171685532|ref|XP_001907707.1| hypothetical protein [Podospora anserina S mat+] gi|170942727|emb|CAP68380.1| unnamed protein product [Podospora anserina S mat+] Length = 1354 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 16/227 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG + ++ + D ++ FSP+ Q+VA + D + + Sbjct: 978 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDK----TIKI 1033 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + R + + FS +G+R S DE + I+ D S + L Sbjct: 1034 WDAASGTCTQTLEGHRGTVRSVAFSPDGQRVA-SGSVDETIKIW--DAASGTCTQTLEGH 1090 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + + +SP G Sbjct: 1091 RGSVRSVAFSPDGQRVASGSV---DNTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQR 1147 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 +A I + +E + + +SP G+ + Sbjct: 1148 VASGSVDET---IKIWDAASGTCTQTLEGHRGTVWSVAFSPDGQRVA 1191 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 16/227 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG + ++ + D ++ FSP+ Q+VA + D + + Sbjct: 936 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDK----TIKI 991 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + R + + FS +G+R S D+ + I+ D S + L Sbjct: 992 WDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA-SGSVDKTIKIW--DAASGTCTQTLEGH 1048 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S E + + + + + S +SP G Sbjct: 1049 RGTVRSVAFSPDGQRVASGSV---DETIKIWDAASGTCTQTLEGHRGSVRSVAFSPDGQR 1105 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 +A I + +E + + +SP G+ + Sbjct: 1106 VASGSVDNT---IKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA 1149 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG N++ + D ++ FSP+ Q+VA + D+ + + Sbjct: 852 QRVASGSDDNTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSDDN----TIKI 907 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + R +L+ FS +G+R S D+ + I+ D S + L Sbjct: 908 WDAASGTCTQTLEGHRGPVLSVAFSPDGQRVA-SGSVDKTIKIW--DAASGTCTQTLEGH 964 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + + + +SP G Sbjct: 965 RGPVWSVAFSPDGQRVASGSV---DKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQR 1021 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A I + +E +++ +SP G+ + D K+ Sbjct: 1022 VASGSVDKT---IKIWDAASGTCTQTLEGHRGTVRSVAFSPDGQRVA---SGSVDETIKI 1075 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + Sbjct: 1076 WDAASGTCTQTLEGHRGSVRSVAFSP 1101 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 104/311 (33%), Gaps = 35/311 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIGKK-----FFSSPASWRKIAHTISDDI------ 162 + + ++WD + + G + SP R + ++ I Sbjct: 936 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKTIKIWDAA 995 Query: 163 ----YQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 Q++ G +G S + V SG + ++ + D + Sbjct: 996 SGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKTIKIWDAASGTCTQTLEGHRGTVRSV 1055 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D+ + + D + + R + + FS +G+R S Sbjct: 1056 AFSPDGQRVASGSVDE----TIKIWDAASGTCTQTLEGHRGSVRSVAFSPDGQRVA-SGS 1110 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D + I+ D S + L S ++SPD ++ S E + + + Sbjct: 1111 VDNTIKIW--DAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSV---DETIKIWDAASG 1165 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQA 394 + + + + +SP G +A I + +E ++ + Sbjct: 1166 TCTQTLEGHRGTVWSVAFSPDGQRVASGSVDKT---IKIWDAASGTCTQTLEGHRGSVLS 1222 Query: 395 PTWSPSGRSLI 405 +SP G+ + Sbjct: 1223 VAFSPDGQRVA 1233 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 24/278 (8%) Query: 137 KQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVM 196 Q+ G + + A + I ++ ++ + S++ I K Sbjct: 761 GQLQGLRLKVIIQDAHRFAQSYGQIIQRAPLQV--YLSALVFAPIGSLIKNIFKEEKPGW 818 Query: 197 DRDGANIRYL------TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 G+ + FSP+ Q+VA + D+ + + D Sbjct: 819 LSTGSVEMQWNACTQTLEGHRGPVRSVAFSPDGQRVASGSDDN----TIKIWDAASGTCT 874 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASY 309 + + R + + FS +G+R S D + I+ D S + L +S ++ Sbjct: 875 QTLEGHRGPVWSVAFSPDGQRVA-SGSDDNTIKIW--DAASGTCTQTLEGHRGPVLSVAF 931 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 SPD ++ S + + + + + + + +SP G +A Sbjct: 932 SPDGQRVASGSV---DKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKT 988 Query: 370 KFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 I + +E + + +SP G+ + Sbjct: 989 ---IKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA 1023 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 33/292 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIGKK-----FFSSPASWRKIAHTISDDI------ 162 + + ++WD + + G + SP R + ++ I Sbjct: 978 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKTIKIWDAA 1037 Query: 163 ----YQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 Q++ G +G S + V SG + ++ + D + Sbjct: 1038 SGTCTQTLEGHRGTVRSVAFSPDGQRVASGSVDETIKIWDAASGTCTQTLEGHRGSVRSV 1097 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D+ + + D + + R + + FS +G+R S Sbjct: 1098 AFSPDGQRVASGSVDN----TIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA-SGS 1152 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 DE + I+ D S + L S ++SPD ++ S + + + + Sbjct: 1153 VDETIKIW--DAASGTCTQTLEGHRGTVWSVAFSPDGQRVASGSV---DKTIKIWDAASG 1207 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + S +SP G +A I + + Sbjct: 1208 TCTQTLEGHRGSVLSVAFSPDGQRVASGSVDKT---IKIWDAASGTYTQTIN 1256 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 20/229 (8%) Query: 219 FSPNQQKV-AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 F+P + + L ++ + + + + R + + FS +G+R S Sbjct: 800 FAPIGSLIKNIFKEEKPGWLSTGSVEMQWNACTQTLEGHRGPVRSVAFSPDGQRVA-SGS 858 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D + I+ D S + L S ++SPD ++ SD + + + Sbjct: 859 DDNTIKIW--DAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSD---DNTIKIWDAASG 913 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQA 394 + + +SP G +A I + +E + + Sbjct: 914 TCTQTLEGHRGPVLSVAFSPDGQRVASGSVDKT---IKIWDAASGTCTQTLEGHRGPVWS 970 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +SP G+ + D K++ + + T T P W Sbjct: 971 VAFSPDGQRVA---SGSVDKTIKIW----DAASGTCTQTLEGHRGPVWS 1012 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 26/219 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIG-----KKFFSSPASWRKIAHTISDDI------ 162 + + ++WD + + G + SP R + ++ + I Sbjct: 1062 QRVASGSVDETIKIWDAASGTCTQTLEGHRGSVRSVAFSPDGQRVASGSVDNTIKIWDAA 1121 Query: 163 ----YQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 Q++ G +G S + V SG + ++ + D ++ Sbjct: 1122 SGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDETIKIWDAASGTCTQTLEGHRGTVWSV 1181 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D + + D + + R +L+ FS +G+R S Sbjct: 1182 AFSPDGQRVASGSVDK----TIKIWDAASGTCTQTLEGHRGSVLSVAFSPDGQRVA-SGS 1236 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 D+ + I+ D S + N S+ ++ I Sbjct: 1237 VDKTIKIW--DAASGTYTQTINIGSTTTHLSFDHTNTYI 1273 >gi|154936832|emb|CAL30201.1| HNWD3 [Podospora anserina] Length = 1346 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 16/227 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG + ++ + D ++ FSP+ Q+VA + D + + Sbjct: 970 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDK----TIKI 1025 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + R + + FS +G+R S DE + I+ D S + L Sbjct: 1026 WDAASGTCTQTLEGHRGTVRSVAFSPDGQRVA-SGSVDETIKIW--DAASGTCTQTLEGH 1082 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + + +SP G Sbjct: 1083 RGSVRSVAFSPDGQRVASGSV---DNTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQR 1139 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 +A I + +E + + +SP G+ + Sbjct: 1140 VASGSVDET---IKIWDAASGTCTQTLEGHRGTVWSVAFSPDGQRVA 1183 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 16/227 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG + ++ + D ++ FSP+ Q+VA + D + + Sbjct: 928 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDK----TIKI 983 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + R + + FS +G+R S D+ + I+ D S + L Sbjct: 984 WDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA-SGSVDKTIKIW--DAASGTCTQTLEGH 1040 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S E + + + + + S +SP G Sbjct: 1041 RGTVRSVAFSPDGQRVASGSV---DETIKIWDAASGTCTQTLEGHRGSVRSVAFSPDGQR 1097 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 +A I + +E + + +SP G+ + Sbjct: 1098 VASGSVDNT---IKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA 1141 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + V SG N++ + D ++ FSP+ Q+VA + D+ + + Sbjct: 844 QRVASGSDDNTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSDDN----TIKI 899 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + R +L+ FS +G+R S D+ + I+ D S + L Sbjct: 900 WDAASGTCTQTLEGHRGPVLSVAFSPDGQRVA-SGSVDKTIKIW--DAASGTCTQTLEGH 956 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD ++ S + + + + + + + +SP G Sbjct: 957 RGPVWSVAFSPDGQRVASGSV---DKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQR 1013 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A I + +E +++ +SP G+ + D K+ Sbjct: 1014 VASGSVDKT---IKIWDAASGTCTQTLEGHRGTVRSVAFSPDGQRVA---SGSVDETIKI 1067 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +TL + Sbjct: 1068 WDAASGTCTQTLEGHRGSVRSVAFSP 1093 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 104/311 (33%), Gaps = 35/311 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIGKK-----FFSSPASWRKIAHTISDDI------ 162 + + ++WD + + G + SP R + ++ I Sbjct: 928 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKTIKIWDAA 987 Query: 163 ----YQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 Q++ G +G S + V SG + ++ + D + Sbjct: 988 SGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKTIKIWDAASGTCTQTLEGHRGTVRSV 1047 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D+ + + D + + R + + FS +G+R S Sbjct: 1048 AFSPDGQRVASGSVDE----TIKIWDAASGTCTQTLEGHRGSVRSVAFSPDGQRVA-SGS 1102 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D + I+ D S + L S ++SPD ++ S E + + + Sbjct: 1103 VDNTIKIW--DAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSV---DETIKIWDAASG 1157 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQA 394 + + + + +SP G +A I + +E ++ + Sbjct: 1158 TCTQTLEGHRGTVWSVAFSPDGQRVASGSVDKT---IKIWDAASGTCTQTLEGHRGSVLS 1214 Query: 395 PTWSPSGRSLI 405 +SP G+ + Sbjct: 1215 VAFSPDGQRVA 1225 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 16/204 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + FSP+ Q+VA + D+ + + D + + R + + Sbjct: 825 QTLEGHRGPVRSVAFSPDGQRVASGSDDN----TIKIWDAASGTCTQTLEGHRGPVWSVA 880 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDRE 323 FS +G+R S D + I+ D S + L +S ++SPD ++ S Sbjct: 881 FSPDGQRVA-SGSDDNTIKIW--DAASGTCTQTLEGHRGPVLSVAFSPDGQRVASGSV-- 935 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + + + + + + + +SP G +A I + Sbjct: 936 -DKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKT---IKIWDAASGTC 991 Query: 384 RLLVED--SNLQAPTWSPSGRSLI 405 +E + + +SP G+ + Sbjct: 992 TQTLEGHRGPVWSVAFSPDGQRVA 1015 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 33/292 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIGKK-----FFSSPASWRKIAHTISDDI------ 162 + + ++WD + + G + SP R + ++ I Sbjct: 970 QRVASGSVDKTIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDKTIKIWDAA 1029 Query: 163 ----YQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 Q++ G +G S + V SG + ++ + D + Sbjct: 1030 SGTCTQTLEGHRGTVRSVAFSPDGQRVASGSVDETIKIWDAASGTCTQTLEGHRGSVRSV 1089 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D+ + + D + + R + + FS +G+R S Sbjct: 1090 AFSPDGQRVASGSVDN----TIKIWDAASGTCTQTLEGHRGPVWSVAFSPDGQRVA-SGS 1144 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 DE + I+ D S + L S ++SPD ++ S + + + + Sbjct: 1145 VDETIKIW--DAASGTCTQTLEGHRGTVWSVAFSPDGQRVASGSV---DKTIKIWDAASG 1199 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 + + S +SP G +A I + + Sbjct: 1200 TCTQTLEGHRGSVLSVAFSPDGQRVASGSVDKT---IKIWDAASGTYTQTIN 1248 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 20/229 (8%) Query: 219 FSPNQQKV-AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 F+P + + L ++ + + + + R + + FS +G+R S Sbjct: 792 FAPIGSLIKNIFKEEKPGWLSTGSVEMQWNACTQTLEGHRGPVRSVAFSPDGQRVA-SGS 850 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D + I+ D S + L S ++SPD ++ SD + + + Sbjct: 851 DDNTIKIW--DAASGTCTQTLEGHRGPVWSVAFSPDGQRVASGSD---DNTIKIWDAASG 905 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQA 394 + + +SP G +A I + +E + + Sbjct: 906 TCTQTLEGHRGPVLSVAFSPDGQRVASGSVDKT---IKIWDAASGTCTQTLEGHRGPVWS 962 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +SP G+ + D K++ + + T T P W Sbjct: 963 VAFSPDGQRVA---SGSVDKTIKIW----DAASGTCTQTLEGHRGPVWS 1004 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 26/219 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIG-----KKFFSSPASWRKIAHTISDDI------ 162 + + ++WD + + G + SP R + ++ + I Sbjct: 1054 QRVASGSVDETIKIWDAASGTCTQTLEGHRGSVRSVAFSPDGQRVASGSVDNTIKIWDAA 1113 Query: 163 ----YQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 Q++ G +G S + V SG + ++ + D ++ Sbjct: 1114 SGTCTQTLEGHRGPVWSVAFSPDGQRVASGSVDETIKIWDAASGTCTQTLEGHRGTVWSV 1173 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FSP+ Q+VA + D + + D + + R +L+ FS +G+R S Sbjct: 1174 AFSPDGQRVASGSVDK----TIKIWDAASGTCTQTLEGHRGSVLSVAFSPDGQRVA-SGS 1228 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 D+ + I+ D S + N S+ ++ I Sbjct: 1229 VDKTIKIW--DAASGTYTQTINIGSTTTHLSFDHTNTYI 1265 >gi|89097995|ref|ZP_01170881.1| YuxL [Bacillus sp. NRRL B-14911] gi|89087158|gb|EAR66273.1| YuxL [Bacillus sp. NRRL B-14911] Length = 663 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 51/239 (21%) Query: 216 EPRFSPNQQKVAYAT---YDDEDILR--VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +P+ +PN + Y +++D +Y ++T AP + +PR+S +G+ Sbjct: 22 DPQLAPNGKDCVYTETVILEEKDAYSSNLYYINTEDQSAPVQWTFGTWRNHSPRWSHDGR 81 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE---------SD 321 + + I+ + +LT + +SPD S+I F +D Sbjct: 82 QVAFVSNRSGKNQIHILSAAGGEARQLTYCKNGAGNPVWSPDGSRIAFTVSLGEGESVND 141 Query: 322 REGKE-----------------------------QLYVMQSNGSDQKRISQDKEASYFDP 352 REG E + + ++ + ++++ + E Y Sbjct: 142 REGGEEKDEKPAPLEVNKMRYKSDAQGFWNGKFTHIAIADTDTGNIEQVT-EGENDYSLQ 200 Query: 353 VWSPQGDLIAFTKFSGE------KFAIGVMKKDGS-QERLLVEDSNLQAPTWSPSGRSL 404 WSP G +A T ++ + QE++ TWSP R L Sbjct: 201 SWSPDGKHLAVTADLSGDKDFSYGSDAYLINLETKEQEKITQGTGYFGNITWSPDSRYL 259 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 69/301 (22%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 V N + D + T + PR+S + ++VA+ + Sbjct: 38 VILEEKDAYSSNLYYINTEDQSAPVQWTFGTWR-NHSPRWSHDGRQVAFVSNRSGKNQIH 96 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA------------------ 281 L + +++ ++ P +S +G R +V E Sbjct: 97 IL--SAAGGEARQLTYCKNGAGNPVWSPDGSRIAFTVSLGEGESVNDREGGEEKDEKPAP 154 Query: 282 --------------------MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 I D + E++T S+SPD + +D Sbjct: 155 LEVNKMRYKSDAQGFWNGKFTHIAIADTDTGNIEQVTEGENDYSLQSWSPDGKHLAVTAD 214 Query: 322 REGKEQL------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEK 370 G + Y++ +Q++I+Q + + WSP + + Sbjct: 215 LSGDKDFSYGSDAYLINLETKEQEKITQGT-GYFGNITWSPDSRYLGLIGHEREFENATL 273 Query: 371 FAIGVMKKDGSQERLLVEDSN--------------LQAPT--WSPSGRSLIFSRKKDGDT 414 V ++ + R L D++ +P WS RS F +G T Sbjct: 274 SKAWVYDREQRELRCLTADTDLLIGDYAIGDFQQGAVSPGLLWSNDNRSFYFIATDNGST 333 Query: 415 G 415 Sbjct: 334 A 334 Score = 70.0 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 82/281 (29%), Gaps = 73/281 (25%) Query: 165 SITGEKGDFNSR-ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + + R + FVS KN + ++ G R LT ++ P +SP+ Sbjct: 70 RNHSPRWSHDGRQVAFVSNR----SGKNQIHILSAAGGEARQLTYCKNG-AGNPVWSPDG 124 Query: 224 QKVAYAT-------------------------------------YDDEDILRVYLMDTRI 246 ++A+ + + + + DT Sbjct: 125 SRIAFTVSLGEGESVNDREGGEEKDEKPAPLEVNKMRYKSDAQGFWNGKFTHIAIADTDT 184 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNT 300 +++ + +S +GK ++ D Y ++L++ E++T Sbjct: 185 G-NIEQVTEGENDYSLQSWSPDGKHLAVTADLSGDKDFSYGSDAYLINLETKEQEKITQG 243 Query: 301 LFINISASYSPD-------SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 + ++SPD + FE+ + +V + + ++ D + D Sbjct: 244 TGYFGNITWSPDSRYLGLIGHEREFEN--ATLSKAWVYDREQRELRCLTADTDLLIGDYA 301 Query: 354 --------------WSPQGDLIAFTKFSGEKFAIGVMKKDG 380 WS F A+ +G Sbjct: 302 IGDFQQGAVSPGLLWSNDNRSFYFIATDNGSTAVYYGTVEG 342 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 28/221 (12%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-----ILRVYLMDTRID 247 + + D D NI +T + + +SP+ + +A D YL++ Sbjct: 177 IAIADTDTGNIEQVTEGENDYSLQ-SWSPDGKHLAVTADLSGDKDFSYGSDAYLINLET- 234 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRA-LISVQKDEA----MDIYSVDLQSNATERLTNTLF 302 + ++I +S + + LI +++ + D + LT Sbjct: 235 KEQEKITQGTGYFGNITWSPDSRYLGLIGHEREFENATLSKAWVYDREQRELRCLTADTD 294 Query: 303 I-------------NISA--SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + +S +S D+ F + G +Y G + D++ Sbjct: 295 LLIGDYAIGDFQQGAVSPGLLWSNDNRSFYFIATDNGSTAVYYGTVEGELFPALL-DRQH 353 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + + +++ + L Sbjct: 354 VYGLSTGGNNDRAVVAISKPDHPGDLFLLEITTGKLEQLTA 394 >gi|295133107|ref|YP_003583783.1| peptidase [Zunongwangia profunda SM-A87] gi|294981122|gb|ADF51587.1| putative exported peptidase [Zunongwangia profunda SM-A87] Length = 1078 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 37/249 (14%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + L P SPN + + + ++ RV + I + + P +S +G Sbjct: 22 NAKWLRYPSISPNGETIVFGYM--GNLYRV----SSDGGVAIAITTGDAYDMRPVWSHDG 75 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---- 325 K + + D+Y++ RLT + +SP ++++ S R Sbjct: 76 KSIAFASDRYGNFDVYTMPATGGTPTRLTYNSANDFPYDFSPQDDKVLYGSGRNAPASSV 135 Query: 326 --------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TK 365 + LY + G + ++ A + +S G + F Sbjct: 136 RFPSPGLFQNLYTIPIKGGRPELLTA---AGAEEAHFSKDGTHLVFQDRKGYEDAWRKHH 192 Query: 366 FSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL- 423 S I + + + + + + P +S G + + +KDG LY +L Sbjct: 193 TSAVTRDIWLYDLENDSYKQISNFEGEDREPVFSADGTKVFYLNEKDGTQ--NLYVKNLS 250 Query: 424 NGRNETLIN 432 +G E L N Sbjct: 251 SGSEEKLTN 259 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 29/205 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S NG+ + ++Y V +T ++ +S D I F SDR Sbjct: 29 PSISPNGETIVF----GYMGNLYRVSSDGGVAIAITTGDAYDMRPVWSHDGKSIAFASDR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-----------EKF 371 G +Y M + G R++ + A+ F +SPQ D + + F Sbjct: 85 YGNFDVYTMPATGGTPTRLTYNS-ANDFPYDFSPQDDKVLYGSGRNAPASSVRFPSPGLF 143 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G + LL +A +S G L+F +K ++ Sbjct: 144 QNLYTIPIKGGRPELLTAAGAEEA-HFSKDGTHLVFQDRKGYEDAWRKHHTSAVTRDIWL 202 Query: 421 IDL-NGRNETLINTPAYASDPQWVG 444 DL N + + N +P + Sbjct: 203 YDLENDSYKQISNFEGEDREPVFSA 227 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 36/267 (13%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY-DDEDILR- 238 S S + +L + G LT + + FS + + + ED R Sbjct: 134 SVRFPSPGLFQNLYTIPIKGGRPELLTAAGAEEAH---FSKDGTHLVFQDRKGYEDAWRK 190 Query: 239 ---------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++L D D K+I NF P FS++G + +KD ++Y +L Sbjct: 191 HHTSAVTRDIWLYDLENDSY-KQISNFEGEDREPVFSADGTKVFYLNEKDGTQNLYVKNL 249 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR--------- 340 S + E+LTN + DS ++ F K ++Y M +K Sbjct: 250 SSGSEEKLTNFKDFPVRHLSISDSDKLAFT----WKGEVYTMTPGTQPKKLEIKVLDDAA 305 Query: 341 ---ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 I S + SP IAF GE F GV D +R+ + + +W Sbjct: 306 FEAIKNMDINSVTEFAVSPNNKEIAFVNR-GEVFVTGV--DDSRTKRITNTSTQERMVSW 362 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLN 424 SPSG+ LIFS +KDG +Y LN Sbjct: 363 SPSGKELIFSGEKDGSW--NVYKATLN 387 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 41/265 (15%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + DG +T D P +S + + +A+A+ + VY M P R Sbjct: 46 LYRVSSDGGVAIAITTG-DAYDMRPVWSHDGKSIAFASDRYGN-FDVYTM-PATGGTPTR 102 Query: 253 IGNFRSMILAPRFSSNGKRALISV------------QKDEAMDIYSVDLQSNATERLTNT 300 + + FS + L ++Y++ ++ E LT Sbjct: 103 LTYNSANDFPYDFSPQDDKVLYGSGRNAPASSVRFPSPGLFQNLYTIPIKGGRPELLTAA 162 Query: 301 LFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQDKEA 347 A +S D + +VF+ DR+G +++ K+IS + E Sbjct: 163 GAE--EAHFSKDGTHLVFQ-DRKGYEDAWRKHHTSAVTRDIWLYDLENDSYKQIS-NFEG 218 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLI 405 +PV+S G + + + V E L D ++ + S L Sbjct: 219 EDREPVFSADGTKVFYLNEKDGTQNLYVKNLSSGSEEKLTNFKDFPVRHLSIS-DSDKLA 277 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETL 430 F+ ++Y++ + + L Sbjct: 278 FT------WKGEVYTMTPGTQPKKL 296 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 88/253 (34%), Gaps = 29/253 (11%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 ++ G L + D A + + E SPN +++A+ + Sbjct: 284 VYTMTPGTQPKKLEIKVLDDAAFEAIKNMDINSVTEFAVSPNNKEIAFVNRGE------V 337 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT------ 294 + D KRI N + +S +GK + S +KD + ++Y L Sbjct: 338 FVTGVDDSRTKRITNTSTQERMVSWSPSGKELIFSGEKDGSWNVYKATLNRPQEEYFYAS 397 Query: 295 -----ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-- 347 E L NT A SPDSS+I F +R L VM + I + Sbjct: 398 TIVDIEPLINTTAEEFQAKISPDSSKIAFIEER---NILKVMDLKSGKKTVILPEGRNHS 454 Query: 348 ---SYFDPVWSPQGDLIAFTKFSGEKF--AIGVMKKDGSQE--RLLVEDSNLQAPTWSPS 400 + WSP + G F + ++K +G+ E + W+ Sbjct: 455 YSDGDWSFQWSPDSRWLMVDDQKGYFFNNNVALIKANGNGEIFHPVNSGFGESNAKWAMD 514 Query: 401 GRSLIFSRKKDGD 413 G+ + ++ ++G Sbjct: 515 GKMMTYTSSREGR 527 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 121/350 (34%), Gaps = 50/350 (14%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTIS-----------DDIYQSITGEKGDFNSRILFVSE 182 KD ++ + +WRK HT + +D Y+ I+ +G+ + Sbjct: 171 KDGTHLVFQDRKGYEDAWRKH-HTSAVTRDIWLYDLENDSYKQISNFEGEDREPVFSADG 229 Query: 183 SVV----SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT------YD 232 + V +L V + + LT +D + S + K+A+ Sbjct: 230 TKVFYLNEKDGTQNLYVKNLSSGSEEKLTNFKDFPVRHLSIS-DSDKLAFTWKGEVYTMT 288 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 + + D A + I N + + S N K +++ + Sbjct: 289 PGTQPKKLEIKVLDDAAFEAIKNMDINSVTEFAVSPNNKEIAFV----NRGEVFVTGVDD 344 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-------- 343 + T+R+TNT S+SP +++F +++G +Y N ++ Sbjct: 345 SRTKRITNTSTQERMVSWSPSGKELIFSGEKDGSWNVYKATLNRPQEEYFYASTIVDIEP 404 Query: 344 --DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLLVEDSN------LQA 394 + A F SP IAF + + VM G + +L E N + Sbjct: 405 LINTTAEEFQAKISPDSSKIAFIEERN---ILKVMDLKSGKKTVILPEGRNHSYSDGDWS 461 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQW 442 WSP R L+ +K + + I NG E +N+ S+ +W Sbjct: 462 FQWSPDSRWLMVDDQKGYFFNNNVALIKANGNGEIFHPVNSGFGESNAKW 511 Score = 44.6 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 12/122 (9%) Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-----ILAPRFSSNG 269 F+ + SP+ K+A+ ++ +IL+V MD + + + R+ + ++S + Sbjct: 413 FQAKISPDSSKIAF--IEERNILKV--MDLKSGKKTVILPEGRNHSYSDGDWSFQWSPDS 468 Query: 270 KRALISVQKD--EAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + ++ QK ++ + N+ F +A ++ D + + S REG++ Sbjct: 469 RWLMVDDQKGYFFNNNVALIKANGNGEIFHPVNSGFGESNAKWAMDGKMMTYTSSREGRK 528 Query: 327 QL 328 L Sbjct: 529 SL 530 >gi|116626609|ref|YP_828765.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116229771|gb|ABJ88480.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 879 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 63/369 (17%), Positives = 131/369 (35%), Gaps = 48/369 (13%) Query: 69 VSKDLQ-RSDVFNLISQDSFKQKITNPDSIPRFQ-DWNSL--GAQVLV-TGRVIKEGKDR 123 + +L +F + Q +T+P + W + G + ++ TG D Sbjct: 420 IVANLTLGGGLFRVPDGGGSPQALTDPAATSEATHRWPQVLPGGRAVLFTGHATTANYDE 479 Query: 124 LRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 +E + K + + R + +L+V++S Sbjct: 480 ANIEVLSLETGKLKVVHRGGYHG-----RYVP------------------TGHLLYVNQS 516 Query: 184 VVSGIIKNSLCVMDRDGANIRYLTP-SRDQILFEPRF-SPNQQKVAYATYDDEDILRVYL 241 + + +L ++ GA + + + ++ +F S N V Y+ V Sbjct: 517 TL-YAVPFNLNRLEEQGAPVPMVGDIAGNRNNGAGQFDSRNGMLVYYSNRYAPKSWPVVW 575 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +D + + I PR S +G R ++V ++ DI D Q RLT Sbjct: 576 IDREGRQ--QVIPLDPGRYSQPRISPDGTRLAMTVGREGGSDIGIYDFQRQTMTRLTFAQ 633 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 N ++PD +VF ++ + M+++G+ + R + + +SP G + Sbjct: 634 -NNSHPVWAPDGKHLVFLTETSRLLAIRWMRADGAGETRTLFEDKNELIPWSFSPDGQ-L 691 Query: 362 AFTKFS-GEKFAIGVMKKD---------GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 AFT + + + + D G ++ + P +SP GR + + + Sbjct: 692 AFTWLAKDASYHLWTLPLDLRDLDNPKTGPPAAVVHTRFTVSHPAFSPDGRWIAY---RS 748 Query: 412 GDTGSKLYS 420 G+ +Y Sbjct: 749 GEKPEGIYV 757 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 100/279 (35%), Gaps = 32/279 (11%) Query: 194 CVMDRDGANIRYLTPSRDQI------LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + D ANI L+ ++ + R+ P + + Sbjct: 473 TTANYDEANIEVLSLETGKLKVVHRGGYHGRYVPTGHLLYVNQSTLYAVPFNLNRLEEQG 532 Query: 248 RAPKRIGNFRSM--ILAPRF-SSNGKRALISVQKDEAMDIYS-VDLQSNATERLTNTLFI 303 +G+ A +F S NG S + +D + + + Sbjct: 533 APVPMVGDIAGNRNNGAGQFDSRNGMLVYYSNRYAPKSWPVVWIDREGRQ-QVIPLDPGR 591 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD +++ REG + + R++ + S+ PVW+P G + F Sbjct: 592 YSQPRISPDGTRLAMTVGREGGSDIGIYDFQRQTMTRLTFAQNNSH--PVWAPDGKHLVF 649 Query: 364 TKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSI 421 + AI M+ DG + R L ED N P ++SP G+ L F+ D L+++ Sbjct: 650 LTETSRLLAIRWMRADGAGETRTLFEDKNELIPWSFSPDGQ-LAFT-WLAKDASYHLWTL 707 Query: 422 DLN---------GRNETLINT------PAYASDPQWVGF 445 L+ G +++T PA++ D +W+ + Sbjct: 708 PLDLRDLDNPKTGPPAAVVHTRFTVSHPAFSPDGRWIAY 746 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 77/254 (30%), Gaps = 26/254 (10%) Query: 193 LCVMDRDGANIRYLTP---SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 L + G + + LT + + P+ P + V + + ++ Sbjct: 430 LFRVPDGGGSPQALTDPAATSEATHRWPQVLPGGRAVLFTGHATTANYDEANIEVLSLET 489 Query: 250 PKRIGNFRSMILAPRFSSNGKRALI-------------SVQKDEAMDIYSVDLQSNATER 296 K R R+ G + +++ A D+ N Sbjct: 490 GKLKVVHRGGYHG-RYVPTGHLLYVNQSTLYAVPFNLNRLEEQGAPVPMVGDIAGNR--- 545 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 N + + + +V+ S+R + V+ + ++++ Y P SP Sbjct: 546 ------NNGAGQFDSRNGMLVYYSNRYAPKSWPVVWIDREGRQQVIPLDPGRYSQPRISP 599 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 G +A T IG+ L N P W+P G+ L+F + Sbjct: 600 DGTRLAMTVGREGGSDIGIYDFQRQTMTRLTFAQNNSHPVWAPDGKHLVFLTETSRLLAI 659 Query: 417 KLYSIDLNGRNETL 430 + D G TL Sbjct: 660 RWMRADGAGETRTL 673 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 103/367 (28%), Gaps = 77/367 (20%) Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RL D+ D ++ + + P S R++ + + G + G Sbjct: 253 RLRDIGDVGLLLEEGPPTIPVSRRRLGRAVVGTLALVSMALAG--------MLWRANRGE 304 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + + G + + PS +I+ SP+ AY + Sbjct: 305 PRPMIRFDADLGLDAVDMAPSGSEIV----ISPDGSLFAYTVRTQGGPNAIATRSLDQAE 360 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 A G P FS +G+ + A + + + L + + AS Sbjct: 361 AAVLRGTEGGNR--PFFSPDGQWLGFFI----AGQMKKISIHGGPVAMLCDAPG-SRGAS 413 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS---PQGDLIAFTK 365 + PD IV G L+ + G + ++ S W P G + FT Sbjct: 414 WGPDG-YIVANLTLGGG--LFRVPDGGGSPQALTDPAATSEATHRWPQVLPGGRAVLFTG 470 Query: 366 F----SGEKFAIGVMKKDGSQERLLVEDSNLQ---------------------------- 393 + ++ I V+ + + +++ Sbjct: 471 HATTANYDEANIEVLSLETGKLKVVHRGGYHGRYVPTGHLLYVNQSTLYAVPFNLNRLEE 530 Query: 394 ----APTW---------------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 P S +G L++ + + ID GR + + P Sbjct: 531 QGAPVPMVGDIAGNRNNGAGQFDSRNG-MLVYYSNRYAPKSWPVVWIDREGRQQVIPLDP 589 Query: 435 AYASDPQ 441 S P+ Sbjct: 590 GRYSQPR 596 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 7/93 (7%) Query: 353 VWSPQGDLIAFT-KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 V SP G L A+T + G AI D ++ +L P +SP G+ L F Sbjct: 330 VISPDGSLFAYTVRTQGGPNAIATRSLDQAEAAVLRGTEGGNRPFFSPDGQWLGFF---- 385 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++ I ++G ++ + W Sbjct: 386 --IAGQMKKISIHGGPVAMLCDAPGSRGASWGP 416 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 13/117 (11%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P FSP+ + +AY + + + + V + + + P +S GK+ Sbjct: 732 VSHPAFSPDGRWIAYRSGEKPEGIYVRRFPPGAEDDTSKWQVSVGGAV-PGWSRTGKQLF 790 Query: 274 I-------SVQKDEAMDIYSVDLQ---SNATERLTNTLFINISAS-YSPDSSQI-VF 318 V D D +SVD + SN + L + S +PD + VF Sbjct: 791 YEKDGRFMVVNYDAGPDSFSVDKEREWSNEPLPMMMRLGGDAWPSDVAPDGKRFLVF 847 >gi|226226567|ref|YP_002760673.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] gi|226089758|dbj|BAH38203.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27] Length = 685 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 49/239 (20%) Query: 218 RFSPNQQKVAYATY--------------DDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 SP+ +V Y D D M A +++ P Sbjct: 37 AISPDGARVLYTVTGWEHPAAKGDTALGDRHDRRSHVFMVPAAGGATRQLTYGERGESQP 96 Query: 264 RFSSNGKRALISVQKD-------EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 +S +GK + I+ + +L++ +SPD S+I Sbjct: 97 TWSPDGKTVAFVASRGAGTGDDAPRAQIWLLPADGGEARQLSSLRDGVSGYVWSPDGSKI 156 Query: 317 VFESD----------------------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 S ++V+ RI+ P W Sbjct: 157 AVTSQDSISREDDAKRRRRDDAQVYEGPSRLSHIWVVDVATGAATRITTGNFTVNGVPSW 216 Query: 355 SPQGDLIAF-----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFS 407 SP G +AF T E+ V+ Q + + ++ P +SP G+ L F+ Sbjct: 217 SPDGARLAFQAGPTTLIRDERHDAYVVDVATKQLDRITSNGEVETTPQFSPDGKLLAFT 275 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 108/296 (36%), Gaps = 54/296 (18%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD----DEDILRV 239 ++ + ++ G R LT ++ +P +SP+ + VA+ +D R Sbjct: 64 GDRHDRRSHVFMVPAAGGATRQLTYG-ERGESQPTWSPDGKTVAFVASRGAGTGDDAPRA 122 Query: 240 YLMDTRID-RAPKRIGNFRSMILAPRFSSNGKRALISVQ--------------------- 277 + D +++ + R + +S +G + ++ Q Sbjct: 123 QIWLLPADGGEARQLSSLRDGVSGYVWSPDGSKIAVTSQDSISREDDAKRRRRDDAQVYE 182 Query: 278 -KDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVFESD-----REGKEQLYV 330 I+ VD+ + A R+T F +N S+SPD +++ F++ R+ + YV Sbjct: 183 GPSRLSHIWVVDVATGAATRITTGNFTVNGVPSWSPDGARLAFQAGPTTLIRDERHDAYV 242 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLV- 387 + RI+ + E P +SP G L+AFT E G+ + R+ Sbjct: 243 VDVATKQLDRITSNGEVE-TTPQFSPDGKLLAFTVVPHEFAAHKDGIPPRTLRNGRVTTF 301 Query: 388 -----EDSNLQAP---------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 +N P WSP G+ L F+ +YS D + T Sbjct: 302 DLATRTSTNHARPDFDVSAGALRWSPDGKELWFTASD--RVYQSVYSYDFASKQYT 355 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 52/236 (22%) Query: 260 ILAPRFSSNGKRALISV----------------QKDEAMDIYSVDLQSNATERLTNTLFI 303 + S +G R L +V + D ++ V AT +LT Sbjct: 33 VGGAAISPDGARVLYTVTGWEHPAAKGDTALGDRHDRRSHVFMVPAAGGATRQLTYGERG 92 Query: 304 NISASYSPDSSQIVFESDREG-------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 ++SPD + F + R + Q++++ ++G + +++S ++ VWSP Sbjct: 93 ESQPTWSPDGKTVAFVASRGAGTGDDAPRAQIWLLPADGGEARQLSSLRDG-VSGYVWSP 151 Query: 357 QGDLIAFTKFS----------------------GEKFAIGVMK-KDGSQERLLVEDSNLQ 393 G IA T I V+ G+ R+ + + Sbjct: 152 DGSKIAVTSQDSISREDDAKRRRRDDAQVYEGPSRLSHIWVVDVATGAATRITTGNFTVN 211 Query: 394 -APTWSPSGRSLIFSRKKD---GDTGSKLYSIDLNGRNETLINTPAYA-SDPQWVG 444 P+WSP G L F D Y +D+ + I + + PQ+ Sbjct: 212 GVPSWSPDGARLAFQAGPTTLIRDERHDAYVVDVATKQLDRITSNGEVETTPQFSP 267 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 105/308 (34%), Gaps = 47/308 (15%) Query: 177 ILFVSESV---VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD- 232 + FV+ + + ++ DG R L+ RD + +SP+ K+A + D Sbjct: 105 VAFVASRGAGTGDDAPRAQIWLLPADGGEARQLSSLRDGVSGY-VWSPDGSKIAVTSQDS 163 Query: 233 --------------------DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + ++++D A + ++ P +S +G R Sbjct: 164 ISREDDAKRRRRDDAQVYEGPSRLSHIWVVDVATGAATRITTGNFTVNGVPSWSPDGARL 223 Query: 273 LI-----SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE-------S 320 ++ +DE D Y VD+ + +R+T+ + + +SPD + F + Sbjct: 224 AFQAGPTTLIRDERHDAYVVDVATKQLDRITSNGEVETTPQFSPDGKLLAFTVVPHEFAA 283 Query: 321 DREG-------KEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++G ++ + D + S WSP G + FT + Sbjct: 284 HKDGIPPRTLRNGRVTTFDLATRTSTNHARPDFDVSAGALRWSPDGKELWFTASDRVYQS 343 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLI 431 + Q +D + + + F S++Y D +G + + Sbjct: 344 VYSYDFASKQYTKRTKDQLVAGLSHNRDASRFAFVLNTAA-WPSEVYVQDGFSGTPKRIT 402 Query: 432 NTPAYASD 439 NT + ++ Sbjct: 403 NTNPWIAE 410 >gi|124006957|ref|ZP_01691786.1| MdsD protein [Microscilla marina ATCC 23134] gi|123987410|gb|EAY27130.1| MdsD protein [Microscilla marina ATCC 23134] Length = 1083 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 80/249 (32%), Gaps = 39/249 (15%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 Q P SP+ + ++ D+ +V + + + P +S +G Sbjct: 15 SPQWTNTPAISPDGSTIVFSY--KGDLYKVPTQ----GGTATLLTLHKGHDMKPVWSKDG 68 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-- 327 + + DIY + + +RLT ++ +S++PD ++F S R Q Sbjct: 69 QSIAFMSDRYGNFDIYLISAKGGQAKRLTYHSSNDVPSSFTPDGKAVLFRSSRLDNAQNA 128 Query: 328 ---------LYVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAF------------T 364 LY + G +I + A+Y G ++ F Sbjct: 129 MFPSGAMSELYQVSLKGGKPTQILTTPALFANYDKT-----GKIMVFQDQKGYEDDRRKH 183 Query: 365 KFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 S + + L P S G+ +++ + G ++ + L Sbjct: 184 HTSSVTRDLWSYVPATNTFTQLTSFKGEDLNPVISEDGKMMVYLSAEKGS--INVFEMTL 241 Query: 424 NGRNETLIN 432 + + + + Sbjct: 242 SNQQKKPLT 250 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 25/222 (11%) Query: 227 AYATYDDEDILRVYLMDTRIDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y + +V + DR P+ I + S NGK V+ +I+ Sbjct: 276 IYTQTSNGSPQKVNIKIFSEDRHNPEEIVSVNRGATDLAISPNGKEVAFVVRG----EIF 331 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-- 343 + ++ T+R+TNT + S+SPD I++ +R G LY ++K Sbjct: 332 AASIEGGTTKRITNTPEQERNISFSPDGRSILYAGERNGSWNLYQTSLTRKEEKYFFSAT 391 Query: 344 --------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + + FDP +SP G +AF + + V+ + R++V + + Sbjct: 392 ILKETPVLESKKETFDPKYSPDGKEVAFLEERTT---LRVINLASKKVRVIVPGNRNYSY 448 Query: 396 T-------WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 WSP G+ + ++ + G + + Sbjct: 449 VDGDQYYDWSPDGKWFLVDFLPRKQWIGEVGLVSSQGTKKPI 490 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 44/285 (15%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 N+ + S + K L + G LT + +P +S + Q +A+ + Sbjct: 20 NTPAISPDGSTIVFSYKGDLYKVPTQGGTATLLTLHKGH-DMKPVWSKDGQSIAFMSDRY 78 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD---------- 283 + +YL+ + +A KR+ S + F+ +GK L + + Sbjct: 79 GN-FDIYLISAKGGQA-KRLTYHSSNDVPSSFTPDGKAVLFRSSRLDNAQNAMFPSGAMS 136 Query: 284 -IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-------------KEQLY 329 +Y V L+ ++ T + A+Y +VF+ D++G L+ Sbjct: 137 ELYQVSLKGGKPTQILTTPAL--FANYDKTGKIMVFQ-DQKGYEDDRRKHHTSSVTRDLW 193 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + +++ K +PV S G ++ + + M Q++ L + Sbjct: 194 SYVPATNTFTQLTSFK-GEDLNPVISEDGKMMVYLSAEKGSINVFEMTLSNQQKKPLTQ- 251 Query: 390 SNLQAPTWSPSGRSLIFSRKKDG----DTGSKLYSIDLNGRNETL 430 P R L SR +G ++Y+ NG + + Sbjct: 252 -FKDHPV-----RDL--SRANNGTLCYRYAGEIYTQTSNGSPQKV 288 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 48/331 (14%), Positives = 101/331 (30%), Gaps = 90/331 (27%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY------ 228 I F+S+ + ++ G + LT F+P+ + V + Sbjct: 69 QSIAFMSDR----YGNFDIYLISAKGGQAKRLTYHSSN-DVPSSFTPDGKAVLFRSSRLD 123 Query: 229 ----ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE---- 280 A + + +Y + + + + + L + GK + QK Sbjct: 124 NAQNAMFPSGAMSELYQVSLKGGKPTQILTTP---ALFANYDKTGKIMVFQDQKGYEDDR 180 Query: 281 --------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 D++S +N +LT+ +++ S D +V+ S +G ++ M Sbjct: 181 RKHHTSSVTRDLWSYVPATNTFTQLTSFKGEDLNPVISEDGKMMVYLSAEKGSINVFEMT 240 Query: 333 SNGSDQKRISQDKEASYFDPVW---------------------SP--------------- 356 + +K ++Q K+ D SP Sbjct: 241 LSNQQKKPLTQFKDHPVRDLSRANNGTLCYRYAGEIYTQTSNGSPQKVNIKIFSEDRHNP 300 Query: 357 -----------------QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWS 398 G +AF I +G + + + ++S Sbjct: 301 EEIVSVNRGATDLAISPNGKEVAFVVRG----EIFAASIEGGTTKRITNTPEQERNISFS 356 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 P GRS++++ +++G LY L + E Sbjct: 357 PDGRSILYAGERNGSW--NLYQTSLTRKEEK 385 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 69/199 (34%), Gaps = 24/199 (12%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR---- 245 + + +G + +T + +Q FSP+ + + YA + TR Sbjct: 327 RGEIFAASIEGGTTKRITNTPEQ-ERNISFSPDGRSILYAGERNGSWNLYQTSLTRKEEK 385 Query: 246 -----IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL--- 297 + + P++S +GK +E + ++L S + Sbjct: 386 YFFSATILKETPVLESKKETFDPKYSPDGKEVAF---LEERTTLRVINLASKKVRVIVPG 442 Query: 298 -TNTLFINISA--SYSPDSSQIV--FESDREGKEQLYVMQSNGS--DQKRISQDKEASYF 350 N +++ +SPD + F ++ ++ ++ S G+ + +++ S Sbjct: 443 NRNYSYVDGDQYYDWSPDGKWFLVDFLPRKQWIGEVGLVSSQGTKKPIENLTKSG-YSDG 501 Query: 351 DPVWSPQGDLIAFTKFSGE 369 W+ GD++ + Sbjct: 502 GGTWAMGGDMMFYYSDRHG 520 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 4/95 (4%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R+ S + + S +GK+ + ++ +++ +L++ +T+ L + Sbjct: 604 RLTIHSSRLSSALVSKDGKKLYYMARFEKGYNLWETNLRTRSTKILAKLNSRGGGMRWDK 663 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D I F G + + +KRI E Sbjct: 664 DQKNI-FLLASGG---ISKINPKSGKRKRIRFSGE 694 >gi|257067641|ref|YP_003153896.1| periplasmic component of the Tol biopolymer transport system [Brachybacterium faecium DSM 4810] gi|256558459|gb|ACU84306.1| periplasmic component of the Tol biopolymer transport system [Brachybacterium faecium DSM 4810] Length = 408 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 28/237 (11%) Query: 193 LCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G + + + + +P+ Q V Y + DD I R L + Sbjct: 170 LFRVPVGGGEPQQIDLGDLPDLNNDHVLAPDGQDV-YVSADDGRIHRAPLAGGETIPVTE 228 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQK---DEA---MDIYSVDLQSNATERLTNTLFINI 305 G+ S +G + D +++V A LT F + Sbjct: 229 DDGHLH---FLHGVSPDGTTLAYIGVQRLEDGTWLPPKVFTVPSSGGAPTPLTEDEFPDD 285 Query: 306 SASYSPDSSQIVFESDRE----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 A YSPD + I F S+R G QL+ M+ +GS ++++ D+ ++F P SP G + Sbjct: 286 GAEYSPDGAWIYFNSERARTVPGHAQLFRMRPDGSGVEQLTDDERVNWF-PHLSPDGRRV 344 Query: 362 AFTKFSGE--------KFAIGVMKKDGSQERLLV----EDSNLQAPTWSPSGRSLIF 406 A+ F + + DG+ R LV + +W+P R L + Sbjct: 345 AYVSFPPGTLGHPADRDVILRLCAPDGTGIRDLVRLHGGQGTMNVNSWAPDSRRLAY 401 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 104/296 (35%), Gaps = 36/296 (12%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 ++ ++ + ++D + + S + + P +S + + D + RV Sbjct: 116 PMPRSLAPGQRSRIHILDVETGQDVIVHDSAEVLYEAPNWSYDGDWLI--VNGDGHLFRV 173 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 + + +G+ + + +G+ +S I+ L T +T Sbjct: 174 PVGGGEPQQI--DLGDLPDLNNDHVLAPDGQDVYVSADDG---RIHRAPLAGGETIPVTE 228 Query: 300 TLF-INISASYSPDSSQIVF---ESDREGK---EQLYVMQSNGSDQKRISQDKEASYFDP 352 ++ SPD + + + + +G +++ + S+G +++D+ Sbjct: 229 DDGHLHFLHGVSPDGTTLAYIGVQRLEDGTWLPPKVFTVPSSGGAPTPLTEDEFPDDGAE 288 Query: 353 VWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFS 407 +SP G I F + M+ DGS L +D P SP GR + + Sbjct: 289 -YSPDGAWIYFNSERARTVPGHAQLFRMRPDGSGVEQLTDDERVNWFPHLSPDGRRVAYV 347 Query: 408 RKKDGDTG--------SKLYSIDLNG--------RNETLINTPAYASDPQWVGFMD 447 G G +L + D G + +N ++A D + + ++D Sbjct: 348 SFPPGTLGHPADRDVILRLCAPDGTGIRDLVRLHGGQGTMNVNSWAPDSRRLAYVD 403 >gi|116200089|ref|XP_001225856.1| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51] gi|88179479|gb|EAQ86947.1| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51] Length = 1552 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 112/339 (33%), Gaps = 38/339 (11%) Query: 128 FRLWDVKDR---KQIIGKKFFSSPASWRKIAHTISDD--------------IYQSITGEK 170 RLWD + + G + S ++ +T++ ++ Sbjct: 1061 IRLWDTATGAHRQTLEGHGHWVSAVAFSPDGNTLASASDDTTIRLWDTATGAHRQTLEGH 1120 Query: 171 GDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 GD + F S ++ S ++ + D R + FSP+ +A Sbjct: 1121 GDSVRAVAFSPDSNTLASASDDKTIRLWDTATGAHRQTLEGHGHWVSAVAFSPDGNTLAS 1180 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 A+ D + L DT + + + A FS +G S D+ + ++ D Sbjct: 1181 ASDDT----TIRLWDTATGAHRQTLEGHGDSVRAVAFSPDGNTLA-SASDDKTIRLW--D 1233 Query: 289 LQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + A + L + ++SPD + + SD + + + ++ + Sbjct: 1234 TATGAHRQTLEGHGHWVRAVAFSPDGNTLASASD---DTTIRLWDTATGAHRQTLEGHGD 1290 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLI 405 +SP G+ +A I + S R +E A +SP G +L Sbjct: 1291 WVNAVAFSPDGNTLASASRDKT---IRLWDTATSAHRQTLEGHGHWVRAVAFSPDGNTLA 1347 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + + D +L+ + +TL + S + Sbjct: 1348 SASR---DKTIRLWDTATSAHRQTLEGHGDWVSAVAFSP 1383 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 112/339 (33%), Gaps = 38/339 (11%) Query: 128 FRLWDVKDR---KQIIGKKFFSSPASWRKIAHTISDD--------------IYQSITGEK 170 RLWD + + G + S ++ +T++ ++ Sbjct: 1145 IRLWDTATGAHRQTLEGHGHWVSAVAFSPDGNTLASASDDTTIRLWDTATGAHRQTLEGH 1204 Query: 171 GDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 GD + F ++ S ++ + D R + FSP+ +A Sbjct: 1205 GDSVRAVAFSPDGNTLASASDDKTIRLWDTATGAHRQTLEGHGHWVRAVAFSPDGNTLAS 1264 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 A+ D + L DT + + + A FS +G S +D+ + ++ D Sbjct: 1265 ASDDT----TIRLWDTATGAHRQTLEGHGDWVNAVAFSPDGNTLA-SASRDKTIRLW--D 1317 Query: 289 LQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 ++A + L + ++SPD + + S + + + + S ++ + Sbjct: 1318 TATSAHRQTLEGHGHWVRAVAFSPDGNTLASASR---DKTIRLWDTATSAHRQTLEGHGD 1374 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLI 405 +SP G+ +A I + R +E A +SP G +L Sbjct: 1375 WVSAVAFSPDGNTLASASDDTT---IRLWDTATGAHRQTLEGHGDWVRAVAFSPDGNTLA 1431 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + DT +L+ +TL + S + Sbjct: 1432 SASD---DTTIRLWDTATGAHRQTLEGHGDWVSAVAFSP 1467 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 22/280 (7%) Query: 163 YQSITGEKGDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++ GD+ S + F ++ S ++ + D R + FS Sbjct: 945 HRQTLEGHGDWVSAVAFSPDGNTLASTSDDKTIRLWDTATGAHRQTLEGHGHWVRAVAFS 1004 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ +A A+ D + L DT + + + A FS + S +D+ Sbjct: 1005 PDGNTLASASDDK----TIRLWDTATGAHRQTLEGHGDSVRAVAFSPDSNTLA-SASRDK 1059 Query: 281 AMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + ++ D + A + L + ++SPD + + SD + + + + Sbjct: 1060 TIRLW--DTATGAHRQTLEGHGHWVSAVAFSPDGNTLASASD---DTTIRLWDTATGAHR 1114 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTW 397 + + S +SP + +A I + R +E A + Sbjct: 1115 QTLEGHGDSVRAVAFSPDSNTLASASDDKT---IRLWDTATGAHRQTLEGHGHWVSAVAF 1171 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 SP G +L + DT +L+ G + + + Sbjct: 1172 SPDGNTLASASD---DTTIRLWDT-ATGAHRQTLEGHGDS 1207 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 99/322 (30%), Gaps = 46/322 (14%) Query: 128 FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS--ESVV 185 RLWD AH G + + F ++ Sbjct: 977 IRLWDTATG------------------AHR-------QTLEGHGHWVRAVAFSPDGNTLA 1011 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S ++ + D R + FSP+ +A A+ D + L DT Sbjct: 1012 SASDDKTIRLWDTATGAHRQTLEGHGDSVRAVAFSPDSNTLASASRDK----TIRLWDTA 1067 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + + + A FS +G S D + ++ D + A + ++ Sbjct: 1068 TGAHRQTLEGHGHWVSAVAFSPDGNTLA-SASDDTTIRLW--DTATGAHRQTLEGHGDSV 1124 Query: 306 SA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 A ++SPDS+ + SD + + + + ++ + +SP G+ +A Sbjct: 1125 RAVAFSPDSNTLASASD---DKTIRLWDTATGAHRQTLEGHGHWVSAVAFSPDGNTLASA 1181 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 I + R +E +A +SP G +L + D +L+ Sbjct: 1182 SDDTT---IRLWDTATGAHRQTLEGHGDSVRAVAFSPDGNTLASASD---DKTIRLWDTA 1235 Query: 423 LNGRNETLINTPAYASDPQWVG 444 +TL + + Sbjct: 1236 TGAHRQTLEGHGHWVRAVAFSP 1257 Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 36/302 (11%) Query: 128 FRLWDVKDR---KQIIGKKFFSSPASWRKIAHTISDD--------------IYQSITGEK 170 RLWD + + G + ++ +T++ ++ Sbjct: 1229 IRLWDTATGAHRQTLEGHGHWVRAVAFSPDGNTLASASDDTTIRLWDTATGAHRQTLEGH 1288 Query: 171 GDFNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 GD+ + + F ++ S ++ + D + R + FSP+ +A Sbjct: 1289 GDWVNAVAFSPDGNTLASASRDKTIRLWDTATSAHRQTLEGHGHWVRAVAFSPDGNTLAS 1348 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 A+ D + L DT + + + A FS +G S D + ++ D Sbjct: 1349 ASRDK----TIRLWDTATSAHRQTLEGHGDWVSAVAFSPDGNTLA-SASDDTTIRLW--D 1401 Query: 289 LQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + A + L + ++SPD + + SD + + + ++ + Sbjct: 1402 TATGAHRQTLEGHGDWVRAVAFSPDGNTLASASD---DTTIRLWDTATGAHRQTLEGHGD 1458 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMK--KDGSQERLLVEDSNLQAPTW-SPSGRSL 404 +SP G + + + +I V S + W + G+ + Sbjct: 1459 WVSAVAFSPDGKCL---ETNRGLLSITVNSEALSSSGGQKPASGFLFVDDDWVTIDGKHV 1515 Query: 405 IF 406 ++ Sbjct: 1516 LW 1517 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 75/233 (32%), Gaps = 18/233 (7%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 ++F P S + + Y I + + + + A FS Sbjct: 906 TYGSALVFSPTLSEIRNR--YWKERLSVIEMAAGIRDHWGAHRQTLEGHGDWVSAVAFSP 963 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKE 326 +G S D+ + ++ D + A + L + ++SPD + + SD + Sbjct: 964 DGNTLA-STSDDKTIRLW--DTATGAHRQTLEGHGHWVRAVAFSPDGNTLASASD---DK 1017 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + + + ++ + S +SP + +A I + R Sbjct: 1018 TIRLWDTATGAHRQTLEGHGDSVRAVAFSPDSNTLASASRDKT---IRLWDTATGAHRQT 1074 Query: 387 VEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 +E A +SP G +L + DT +L+ G + + + Sbjct: 1075 LEGHGHWVSAVAFSPDGNTLASASD---DTTIRLWDT-ATGAHRQTLEGHGDS 1123 >gi|332668331|ref|YP_004451119.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] gi|332337145|gb|AEE54246.1| peptidase S41 [Haliscomenobacter hydrossis DSM 1100] Length = 1075 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 32/263 (12%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +R+L+ ++D L FS + L V + T R ++I + Sbjct: 268 HPVRFLSQAKDGTLC---FSYAGNLYTMSPKAKPKQLNVNI-ATDARRNNEQILPVSAGA 323 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 SSNGK + +++ ++ T+R+TNT S S+SPD +++ S Sbjct: 324 RDLAVSSNGKEVAFVFRG----EVFVTSVEGGVTKRITNTPEQERSVSFSPDGKALLYSS 379 Query: 321 DREGKEQLYVMQSNGSD-----------QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R ++Y + + S+ + I ++ + +Y P +SP G IAF + + Sbjct: 380 ERGNSWKIYETKISRSEEPYFYASTLLKETPIIENTKENY-QPEYSPDGKEIAFIE---D 435 Query: 370 KFAIGVMKKDGSQERLLVEDS-------NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + V Q R L+ D N Q +WSP G+ ++F G ++ I Sbjct: 436 RMTLKVYNIASKQTRTLLTDQELFSMGDNDQYFSWSPDGKWILFDYSVPGVPTGEIGIIA 495 Query: 423 LNGRNETLINTPAYASD--PQWV 443 NG+++ + T + D P+W+ Sbjct: 496 SNGKSKVINLTESGFQDSRPKWI 518 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 82/251 (32%), Gaps = 33/251 (13%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 T + L P SP+ + V + D+ +V + + + P + Sbjct: 23 FTQNSPSWLRYPSISPDGKTVVFTY--KGDLWKV----SPEGGNAMPLTLHEAHDFMPVW 76 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--- 322 S +GK + + D++S+ + +RLT +S D IVF S R Sbjct: 77 SRDGKTICFASDRFGNFDLFSIPAEGGEAKRLTFHSANEYPYDFSTDDKNIVFGSARMDL 136 Query: 323 --------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---- 370 + +LY + NG + G + + G + Sbjct: 137 ASNRQYPTGSQPELYQVSLNGGKVSMLLPTPAEDVKHNK---DGSKLLYHDKKGGENTWR 193 Query: 371 --------FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + V + L + + P ++ + RS+++ + +G +++ Sbjct: 194 KHHTSSITRDLWVYDSKTQKHTKLTTFNGEDRNPIFADNDRSVVYLSEANGSFNVHKFAL 253 Query: 422 DLNGRNETLIN 432 D + E L + Sbjct: 254 DNPTKVEALTS 264 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 S N ++VA+ + + + KRI N + FS +GK L S + Sbjct: 327 AVSSNGKEVAFVFRGE------VFVTSVEGGVTKRITNTPEQERSVSFSPDGKALLYSSE 380 Query: 278 KDEAMDIYSVDLQSN-----------ATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + + IY + + + N YSPD +I F DR Sbjct: 381 RGNSWKIYETKISRSEEPYFYASTLLKETPIIENTKENYQPEYSPDGKEIAFIEDR---M 437 Query: 327 QLYVMQSNGSDQKRISQDKE-----ASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKD 379 L V + + D+E + WSP G I F IG++ + Sbjct: 438 TLKVYNIASKQTRTLLTDQELFSMGDNDQYFSWSPDGKWILFDYSVPGVPTGEIGIIASN 497 Query: 380 GSQERL-LVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 G + + L E + P W G+++++ +DG Sbjct: 498 GKSKVINLTESGFQDSRPKWILGGKAMVWFSNRDG 532 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 22/249 (8%) Query: 214 LFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 ++P +SP+ +++A+ + + TR + + + +S +GK Sbjct: 418 NYQPEYSPDGKEIAFIEDRMTLKVYNIASKQTRTLLTDQELFSMGDNDQYFSWSPDGKWI 477 Query: 273 LISVQKDEAM--DIYSVDLQSN-ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 L +I + LT + F + + +V+ S+R+G + + Sbjct: 478 LFDYSVPGVPTGEIGIIASNGKSKVINLTESGFQDSRPKWILGGKAMVWFSNRDGLKSVA 537 Query: 330 VMQSNGSDQKRISQDKEA------SYFDPVWSPQGDLIA--------FTKFSGEKFAIGV 375 S+ D + +EA + D + + A + + Sbjct: 538 QGGSSQVDAFALFFTQEAFDKYRLNKEDAALAKDLEEKATKADTTKKKDSPKKDSIVLDF 597 Query: 376 MKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTP 434 + +L + SN+ S G +L + + + G L+S +L + LI Sbjct: 598 EDLTLRKVKLTIHSSNMSDVLLSKDGETLYYLAR--FERGFNLWSTNLRTKETKMLIPLN 655 Query: 435 A-YASDPQW 442 A QW Sbjct: 656 ATGGGSMQW 664 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAP 395 Q +Q+ + P SP G + FT + + +G L +++ P Sbjct: 19 SQSGFTQNSPSWLRYPSISPDGKTVVFTYKGD----LWKVSPEGGNAMPLTLHEAHDFMP 74 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 WS G+++ F+ + G+ L+SI G + Sbjct: 75 VWSRDGKTICFASDRFGNF--DLFSIPAEGGEAKRLT 109 >gi|310641988|ref|YP_003946746.1| peptidase s9 prolyl oligopeptidase active site domain protein [Paenibacillus polymyxa SC2] gi|309246938|gb|ADO56505.1| Peptidase S9 prolyl oligopeptidase active site domain protein [Paenibacillus polymyxa SC2] Length = 675 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 88/277 (31%), Gaps = 60/277 (21%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVY---LMDTRIDRAPKRIGNFRSMILAPRFS 266 R + +P P ++AY Y + + + P +S Sbjct: 20 RFHWVSDPAVHPTSGEIAYVEQCINKEQTDYNSAIWLLPFEGEAPIPFTYGPKDETPVWS 79 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------- 319 +G + D ++ + + +LT+ S S+SPD + I F Sbjct: 80 PDGSQLAFLRSTDGKRQVWIIPARGGEARQLTHVENNVRSLSWSPDGAYISFVAKTAENQ 139 Query: 320 -------------------------SDREG-----KEQLYVMQSNGSDQKRISQDKEASY 349 SD G ++ LYV +++ Sbjct: 140 SSSTCDVGEQETHLEGRVVNRTKAKSDGYGLWDDTRDHLYVTDVTSGHTVQLTS-GAYDV 198 Query: 350 FDPVWSPQGDLIAFT-------------KFSGEKFAIGVMKKDGSQE---RLLVEDSNLQ 393 +PVWSP G LI F + + F I +G+ +L + ++ Sbjct: 199 AEPVWSPNGQLILFIARIAEHSKEDTDLRKQNDLFTIAPASSNGNAAAPFKLTHSELQIE 258 Query: 394 APTWSPSGRSLIFS---RKKDGDTGSKLYSIDLNGRN 427 + +SP G + F R G T ++LY++ +G Sbjct: 259 SAAFSPDGTMIAFYGHDRHAKGATQTRLYTVPSSGGK 295 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 50/366 (13%), Positives = 108/366 (29%), Gaps = 89/366 (24%) Query: 142 KKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS--LCVMDRD 199 K+ + +R H +SD +GE I +V + + + + ++ + Sbjct: 10 KRRIIAEDLYRF--HWVSDPAVHPTSGE-------IAYVEQCINKEQTDYNSAIWLLPFE 60 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G T P +SP+ ++A+ D R + +++ + + Sbjct: 61 GEAPIPFTYG--PKDETPVWSPDGSQLAFLRSTDGK--RQVWIIPARGGEARQLTHVENN 116 Query: 260 ILAPRFSSNGKRALIS-------------------------------------VQKDEAM 282 + + +S +G + D Sbjct: 117 VRSLSWSPDGAYISFVAKTAENQSSSTCDVGEQETHLEGRVVNRTKAKSDGYGLWDDTRD 176 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQLYVM 331 +Y D+ S T +LT+ + +SP+ I+F + R+ + + Sbjct: 177 HLYVTDVTSGHTVQLTSGAYDVAEPVWSPNGQLILFIARIAEHSKEDTDLRKQNDLFTIA 236 Query: 332 QSNGSDQKRISQDKEASYF---DPVWSPQGDLIAF-----TKFSGEKFAIGVMKKDGSQE 383 ++ + S +SP G +IAF + + + G + Sbjct: 237 PASSNGNAAAPFKLTHSELQIESAAFSPDGTMIAFYGHDRHAKGATQTRLYTVPSSGGKA 296 Query: 384 RLLVEDSNLQ----------------APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + E + P +S G+SL +G +Y L+G Sbjct: 297 VCVSETLDAHLGNAGMSDMRSHLHVGPPRFSADGQSLYTLVTIEG--NVHVYQFALDGTF 354 Query: 428 ETLINT 433 + L Sbjct: 355 KILTQG 360 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 45/182 (24%) Query: 306 SASYSPDSSQIVFESD------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + P S +I + + ++++ G + + PVWSP G Sbjct: 26 DPAVHPTSGEIAYVEQCINKEQTDYNSAIWLLPFEGEAPIPFTYGPK--DETPVWSPDGS 83 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD------- 411 +AF + + K + ++ G + R L ++N+++ +WSP G + F K Sbjct: 84 QLAFLRSTDGKRQVWIIPARGGEARQLTHVENNVRSLSWSPDGAYISFVAKTAENQSSST 143 Query: 412 ----------------------------GDTGSKLYSIDLN-GRNETLINTPAYASDPQW 442 DT LY D+ G L + ++P W Sbjct: 144 CDVGEQETHLEGRVVNRTKAKSDGYGLWDDTRDHLYVTDVTSGHTVQLTSGAYDVAEPVW 203 Query: 443 VG 444 Sbjct: 204 SP 205 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 42/237 (17%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 ++ L V D + LT S + EP +SPN Q + + E + + Sbjct: 172 DDTRDHLYVTDVTSGHTVQLT-SGAYDVAEPVWSPNGQLILFIARIAEHSKEDTDLRKQN 230 Query: 247 DRAPKRIGNFRSMILAP-------------RFSSNGKRALISVQKDEA-----MDIYSVD 288 D + AP FS +G A +Y+V Sbjct: 231 DLFTIAPASSNGNAAAPFKLTHSELQIESAAFSPDGTMIAFYGHDRHAKGATQTRLYTVP 290 Query: 289 LQSNATE--------RLTNTLFINIS-------ASYSPDSSQIVFESDREGKEQLYVMQS 333 L N ++ +S D + EG +Y Sbjct: 291 SSGGKAVCVSETLDAHLGNAGMSDMRSHLHVGPPRFSADGQSLYTLVTIEGNVHVYQFAL 350 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----GEKFAIGVMKKDGSQERLL 386 +G+ + I E + + I G+ F I + G++ERL Sbjct: 351 DGTFK--ILTQGEREIYQFELTSDEQHIIAASTDVALPGDLFRIAIHS--GNEERLT 403 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 18/131 (13%) Query: 332 QSNGSDQKRISQD---KEASYFDPVWSPQGDLIAFTKF------SGEKFAIGVMKKDGSQ 382 G+ ++RI + + DP P IA+ + + AI ++ +G Sbjct: 4 SQAGTTKRRIIAEDLYRFHWVSDPAVHPTSGEIAYVEQCINKEQTDYNSAIWLLPFEGEA 63 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-------TPA 435 + P WSP G L F R DG +++ I G + + + Sbjct: 64 PIPFTYGPKDETPVWSPDGSQLAFLRSTDGKR--QVWIIPARGGEARQLTHVENNVRSLS 121 Query: 436 YASDPQWVGFM 446 ++ D ++ F+ Sbjct: 122 WSPDGAYISFV 132 >gi|317033773|ref|XP_001395414.2| hypothetical protein ANI_1_1672104 [Aspergillus niger CBS 513.88] Length = 688 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 58/340 (17%), Positives = 101/340 (29%), Gaps = 89/340 (26%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI-RYLTPSRDQILFEPRFSPNQQKVAY 228 + I +++ SG L + + DG N + L + + P +S + + + + Sbjct: 61 PIEGKKGIFYMNRIGPSGG---QLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVF 117 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSV 287 + + + S+ S NGK S Q + +I+ Sbjct: 118 TSERRGPGQSDLYRVRVDGSGLETLAATDSVEDIGVLSPNGKTLAYVSTQGNYTTNIWVK 177 Query: 288 DLQSNATERLTNTLFINIS---------ASYSPDSSQIVFESDR--------EGKE---- 326 DL S + LT+T S+SPD IVF SDR +G Sbjct: 178 DLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHT 237 Query: 327 ---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------------- 370 +Y ++ +GSD + + + + S P +SP G I + + E Sbjct: 238 QTLGVYAVRPDGSDFRTVIRQEGYSLGTPQFSPDGKRIIYNNMTTEDTYGCHGVSAQQEA 297 Query: 371 --FAIGVMKKDGSQERLLVEDS-------------------------------------- 390 I + + Sbjct: 298 VTAQIYSVDFATGSNVIAHTSGSYPKVGQHYIGNSTNIGYLIKAGDYEGIHYTKPDFTHR 357 Query: 391 -----NLQAPTWSPSGRSLIFS--RKKDGDTGSKLYSIDL 423 N++ P WSP G L++ KL+S D Sbjct: 358 SFNLTNMRDPWWSPDGSKLVYWVPNWTQQAAELKLWSYDT 397 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 37/225 (16%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL------ISVQKDEAMDIYSVDLQSNAT 294 + + + + S P ++ +G + + IY Sbjct: 450 IYNISNSTEVEWLEEGNSGAFQPSWNPDGTELVSGFGAWFVSRTTNTAKIYHAFANGTWH 509 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYFD 351 LT+ + S+SPD S IV+ E L+++ +++ + Sbjct: 510 TNLTDGSDNSGFPSWSPDGSAIVYRKWSLATEAPLGLHILNFTTGKTHQLT---DGWDNT 566 Query: 352 PVWSPQGDLIAFTKFSG-----------EKFAIGVMKKDGSQERLLVED-SNLQAPTWSP 399 P WSP G+ I FT+ + ++F I ++ DGS+ + + SN WS Sbjct: 567 PGWSPDGERIVFTRNNNWTESYGARWYADRFDIYTIRPDGSELTRVTDSLSNDAHAVWSQ 626 Query: 400 SGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLIN 432 GR +++S + G ++ ++ +G N+TL+ Sbjct: 627 DGR-IMWSSGQYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVT 670 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 33/208 (15%) Query: 269 GKRALISVQKDE--AMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFESDREG 324 GK+ + + + ++ + +L + + ++S D IVF S+R G Sbjct: 64 GKKGIFYMNRIGPSGGQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRG 123 Query: 325 KEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGS 381 Q LY ++ +GS + ++ V SP G +A+ G I V Sbjct: 124 PGQSDLYRVRVDGSGLETLAATDSVEDIG-VLSPNGKTLAYVSTQGNYTTNIWVKDLASG 182 Query: 382 QERLLVEDSNLQA----------PTWSPSGRSLIFSRKKDGDTGSK-------------L 418 Q + L + ++ +A P+WSP G ++FS ++ D + Sbjct: 183 QAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGV 242 Query: 419 YSIDLNGRN-ETLINTPAYA-SDPQWVG 444 Y++ +G + T+I Y+ PQ+ Sbjct: 243 YAVRPDGSDFRTVIRQEGYSLGTPQFSP 270 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 39/229 (17%) Query: 206 LTPSRDQILFEPRFSPNQQKV-----AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 + F+P ++P+ ++ A+ + ++Y + + Sbjct: 461 WLEEGNSGAFQPSWNPDGTELVSGFGAWFVSRTTNTAKIY-HAFANGTWHTNLTDGSDNS 519 Query: 261 LAPRFSSNGKRALI---SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 P +S +G + S+ + + ++ ++ + T +LT+ + + +SPD +IV Sbjct: 520 GFPSWSPDGSAIVYRKWSLATEAPLGLHILNFTTGKTHQLTD--GWDNTPGWSPDGERIV 577 Query: 318 FESDREG-----------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 F + + +Y ++ +GS+ R++ D ++ VWS G I ++ Sbjct: 578 FTRNNNWTESYGARWYADRFDIYTIRPDGSELTRVT-DSLSNDAHAVWSQDGR-IMWSSG 635 Query: 367 SGE--------------KFAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 I VM DG+ + L+ + P + P+ Sbjct: 636 QYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMPN 684 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 23/155 (14%) Query: 313 SSQIVFESDREG--KEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFT--KFS 367 + +F +R G QL++ S+G++ ++ + A + P WS G+ I FT + Sbjct: 64 GKKGIFYMNRIGPSGGQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRG 123 Query: 368 GEKFAIGVMKKDGSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL-NG 425 + + ++ DGS L +++ SP+G++L + + G+ + ++ DL +G Sbjct: 124 PGQSDLYRVRVDGSGLETLAATDSVEDIGVLSPNGKTLAYVSTQ-GNYTTNIWVKDLASG 182 Query: 426 RNETLINT---------------PAYASDPQWVGF 445 + + L +T P+++ D +W+ F Sbjct: 183 QAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVF 217 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 58/361 (16%), Positives = 108/361 (29%), Gaps = 105/361 (29%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQIL--------FEPRFSPNQQKVAYAT-------- 230 G ++ V D + LT + F P +SP+ + + +++ Sbjct: 168 GNYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTG 227 Query: 231 ------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---------- 274 ++ L VY + I + P+FS +GKR + Sbjct: 228 HSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQEGYSLGTPQFSPDGKRIIYNNMTTEDTYG 287 Query: 275 -----SVQKDEAMDIYSVDLQSN--------------ATERLTNTLFINI---------- 305 + Q+ IYSVD + + N+ I Sbjct: 288 CHGVSAQQEAVTAQIYSVDFATGSNVIAHTSGSYPKVGQHYIGNSTNIGYLIKAGDYEGI 347 Query: 306 ------------------SASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQ-- 343 +SPD S++V+ + + +L + + + R Sbjct: 348 HYTKPDFTHRSFNLTNMRDPWWSPDGSKLVYWVPNWTQQAAELKLWSYDTEWEYRYMDVF 407 Query: 344 -------DKEASYFDPVWSPQGDLI----AFTKFSG--EKFAIGVMKKDGSQERLLVEDS 390 ++ AS + S G L+ +T + + I + E L +S Sbjct: 408 PMHNTVINRIASTQKVLGSANGSLVHSSPVYTDVVDALDSYDIYNISNSTEVEWLEEGNS 467 Query: 391 NLQAPTWSPSGRSLI------FSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 P+W+P G L+ F + +K+Y NG T L + + P W Sbjct: 468 GAFQPSWNPDGTELVSGFGAWFVSRT--TNTAKIYHAFANGTWHTNLTDGSDNSGFPSWS 525 Query: 444 G 444 Sbjct: 526 P 526 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 80/237 (33%), Gaps = 56/237 (23%) Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G F S + KI H ++ + + + D + + + K SL Sbjct: 485 FGAWFVSRTTNTAKIYHAFANGTWHTNLTDGSDNSGFPSWSPDGSAIVYRKWSLATEAPL 544 Query: 200 GANIRYLTPSR-----DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 G +I T + D P +SP+ +++ + Sbjct: 545 GLHILNFTTGKTHQLTDGWDNTPGWSPDGERIVFTRN----------------------- 581 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N + R+ ++ DIY++ + R+T++L + A +S D Sbjct: 582 NNWTESYGARWYAD------------RFDIYTIRPDGSELTRVTDSLSNDAHAVWSQDG- 628 Query: 315 QIVFESDREG--------------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 +I++ S + G Q+ VM +G+++ ++ D P++ P Sbjct: 629 RIMWSSGQYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVT-DTIWEDSMPLYMPN 684 >gi|45656912|ref|YP_000998.1| hypothetical protein LIC11028 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600149|gb|AAS69635.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 2588 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 97/264 (36%), Gaps = 45/264 (17%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DE 280 + + Y T + ++ D + + + P S +GK+ + ++ D Sbjct: 66 DGSYLFYTT-GQKGNYDIWFRDLK-SSITVPVTTHPAPEYKPAISPDGKKLVFVSEQYDS 123 Query: 281 AMDIYSVDLQSN-------ATER--------LTNT---------LFINISASYSPDSSQI 316 + D+ + + +R LTN+ +++ ++PD + Sbjct: 124 SGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGKKDSYVDTDPFFAPDGRHL 183 Query: 317 VFESDR--EGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-A 372 VF +DR G + L V+ + G + K ++Q AS P WS G I + + F Sbjct: 184 VFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGAS---PFWSKDGKSIVYISYQDGVFGD 240 Query: 373 IGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSR-----KKDGDT----GSKLYSID 422 + ++ G ERL + +P+ S R L ++ ++G S + D Sbjct: 241 VYLLDLSSGKNERLTKDSYLNFSPSLSEDKRYLYYTSIQNDTNRNGRLDERDNSLIVRKD 300 Query: 423 L-NGRNETLINTPAYASDPQWVGF 445 L G L + D ++ F Sbjct: 301 LKTGVVRRLTSGNDSLFDSRFSAF 324 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 28/225 (12%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 T + P + R L +++G + + DI+ DL+S+ T +T Sbjct: 42 TPENEKPFPLTVQRGNNLYNSTTADGSYLFYTTGQKGNYDIWFRDLKSSITVPVTTHPAP 101 Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSN-------------GSDQKRISQDKEA 347 + SPD ++VF S D G L M SD ++ + Sbjct: 102 EYKPAISPDGKKLVFVSEQYDSSGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFS 161 Query: 348 S--------YFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 DP ++P G + F+ + + + V+ +G + L+ +P W Sbjct: 162 DTGKKDSYVDTDPFFAPDGRHLVFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGASPFW 221 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQ 441 S G+S+++ +DG G +Y +DL +G+NE L P Sbjct: 222 SKDGKSIVYISYQDGVFG-DVYLLDLSSGKNERLTKDSYLNFSPS 265 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 91/283 (32%), Gaps = 44/283 (15%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + D ++I + ++P SP+ +K+ + + + + L Sbjct: 71 FYTTGQKGNYDIWFRDLK-SSITVPVTTHPAPEYKPAISPDGKKLVFVSEQYDSSGDLIL 129 Query: 242 MDTRIDRAPKRIGNFRS-----------------------MILAPRFSSNGKRALISVQK 278 + +I + + P F+ +G+ + S + Sbjct: 130 LKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGKKDSYVDTDPFFAPDGRHLVFSTDR 189 Query: 279 --DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQSNG 335 ++ +D + +L S +S D IV+ S ++G +Y++ + Sbjct: 190 LTPGIQNLVVLDTEGKEPMKLLTQKG-GASPFWSKDGKSIVYISYQDGVFGDVYLLDLSS 248 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-----------EKFAIGVMKKDGSQER 384 +R+++D + F P S + +T + I R Sbjct: 249 GKNERLTKDSYLN-FSPSLSEDKRYLYYTSIQNDTNRNGRLDERDNSLIVRKDLKTGVVR 307 Query: 385 LLVEDSNLQAPT-WSP-SGRSLIFSRKKDGDTGSKLYSIDLNG 425 L ++ + +S +G S++F+ +Y I +G Sbjct: 308 RLTSGNDSLFDSRFSAFNGGSILFTAAYYDT--LNIYFIPASG 348 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 15/194 (7%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +N + +P F+P+ + + ++T ++ ++ + P ++ + Sbjct: 158 SNFSDTGKKDSYVDTDPFFAPDGRHLVFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGA 217 Query: 261 LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +P +S +GK + +D D+Y +DL S ERLT ++N S S S D + + Sbjct: 218 -SPFWSKDGKSIVYISYQDGVFGDVYLLDLSSGKNERLTKDSYLNFSPSLSEDKRYLYYT 276 Query: 320 S-----DREG------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP-QGDLIAFTKFS 367 S +R G + +R++ + S FD +S G I FT Sbjct: 277 SIQNDTNRNGRLDERDNSLIVRKDLKTGVVRRLTSGND-SLFDSRFSAFNGGSILFTAAY 335 Query: 368 GEKFAIGVMKKDGS 381 + I + GS Sbjct: 336 YDTLNIYFIPASGS 349 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 27/177 (15%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 LT N+ S + D S + + + ++G ++ S ++ A + P Sbjct: 47 KPFPLTVQRGNNLYNSTTADGSYLFYTTGQKGNYDIWFRDLKSSITVPVTT-HPAPEYKP 105 Query: 353 VWSPQGDLIAFTK---FSGEKFAIGVMKKD-------------GSQERLLV--------- 387 SP G + F S + M S +L Sbjct: 106 AISPDGKKLVFVSEQYDSSGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGK 165 Query: 388 -EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + P ++P GR L+FS + L +D G+ + T + P W Sbjct: 166 KDSYVDTDPFFAPDGRHLVFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGASPFWS 222 >gi|24215766|ref|NP_713247.1| TolB-like protein [Leptospira interrogans serovar Lai str. 56601] gi|24196947|gb|AAN50265.1| TolB-related protein [Leptospira interrogans serovar Lai str. 56601] Length = 2588 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 97/264 (36%), Gaps = 45/264 (17%) Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DE 280 + + Y T + ++ D + + + P S +GK+ + ++ D Sbjct: 66 DGSYLFYTT-GQKGNYDIWFRDLK-SSITVPVTTHPAPEYKPAISPDGKKLVFVSEQYDS 123 Query: 281 AMDIYSVDLQSN-------ATER--------LTNT---------LFINISASYSPDSSQI 316 + D+ + + +R LTN+ +++ ++PD + Sbjct: 124 SGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGKKDSYVDTDPFFAPDGRHL 183 Query: 317 VFESDR--EGKEQLYVMQSNGSDQ-KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-A 372 VF +DR G + L V+ + G + K ++Q AS P WS G I + + F Sbjct: 184 VFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGAS---PFWSKDGKSIVYISYQDGVFGD 240 Query: 373 IGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSR-----KKDGDT----GSKLYSID 422 + ++ G ERL + +P+ S R L ++ ++G S + D Sbjct: 241 VYLLDLSSGKNERLTKDSYLNFSPSLSEDKRYLYYTSIQNDTNRNGRLDERDNSLIVRKD 300 Query: 423 L-NGRNETLINTPAYASDPQWVGF 445 L G L + D ++ F Sbjct: 301 LKTGVVRRLTSGNDSLFDSRFSAF 324 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 28/225 (12%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 T + P + R L +++G + + DI+ DL+S+ T +T Sbjct: 42 TPENEKPFPLTVQRGNNLYNSTTADGSYLFYTTGQKGNYDIWFRDLKSSITVPVTTHPAP 101 Query: 304 NISASYSPDSSQIVFES---DREGKEQLYVMQSN-------------GSDQKRISQDKEA 347 + SPD ++VF S D G L M SD ++ + Sbjct: 102 EYKPAISPDGKKLVFVSEQYDSSGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFS 161 Query: 348 S--------YFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 DP ++P G + F+ + + + V+ +G + L+ +P W Sbjct: 162 DTGKKDSYVDTDPFFAPDGRHLVFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGASPFW 221 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQ 441 S G+S+++ +DG G +Y +DL +G+NE L P Sbjct: 222 SKDGKSIVYISYQDGVFG-DVYLLDLSSGKNERLTKDSYLNFSPS 265 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 91/283 (32%), Gaps = 44/283 (15%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + D ++I + ++P SP+ +K+ + + + + L Sbjct: 71 FYTTGQKGNYDIWFRDLK-SSITVPVTTHPAPEYKPAISPDGKKLVFVSEQYDSSGDLIL 129 Query: 242 MDTRIDRAPKRIGNFRS-----------------------MILAPRFSSNGKRALISVQK 278 + +I + + P F+ +G+ + S + Sbjct: 130 LKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGKKDSYVDTDPFFAPDGRHLVFSTDR 189 Query: 279 --DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQSNG 335 ++ +D + +L S +S D IV+ S ++G +Y++ + Sbjct: 190 LTPGIQNLVVLDTEGKEPMKLLTQKG-GASPFWSKDGKSIVYISYQDGVFGDVYLLDLSS 248 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-----------EKFAIGVMKKDGSQER 384 +R+++D + F P S + +T + I R Sbjct: 249 GKNERLTKDSYLN-FSPSLSEDKRYLYYTSIQNDTNRNGRLDERDNSLIVRKDLKTGVVR 307 Query: 385 LLVEDSNLQAPT-WSP-SGRSLIFSRKKDGDTGSKLYSIDLNG 425 L ++ + +S +G S++F+ +Y I +G Sbjct: 308 RLTSGNDSLFDSRFSAFNGGSILFTAAYYDT--LNIYFIPASG 348 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 15/194 (7%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +N + +P F+P+ + + ++T ++ ++ + P ++ + Sbjct: 158 SNFSDTGKKDSYVDTDPFFAPDGRHLVFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGA 217 Query: 261 LAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 +P +S +GK + +D D+Y +DL S ERLT ++N S S S D + + Sbjct: 218 -SPFWSKDGKSIVYISYQDGVFGDVYLLDLSSGKNERLTKDSYLNFSPSLSEDKRYLYYT 276 Query: 320 S-----DREG------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP-QGDLIAFTKFS 367 S +R G + +R++ + S FD +S G I FT Sbjct: 277 SIQNDTNRNGRLDERDNSLIVRKDLKTGVVRRLTSGND-SLFDSRFSAFNGGSILFTAAY 335 Query: 368 GEKFAIGVMKKDGS 381 + I + GS Sbjct: 336 YDTLNIYFIPASGS 349 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 27/177 (15%) Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 LT N+ S + D S + + + ++G ++ S ++ A + P Sbjct: 47 KPFPLTVQRGNNLYNSTTADGSYLFYTTGQKGNYDIWFRDLKSSITVPVTT-HPAPEYKP 105 Query: 353 VWSPQGDLIAFTK---FSGEKFAIGVMKKD-------------GSQERLLV--------- 387 SP G + F S + M S +L Sbjct: 106 AISPDGKKLVFVSEQYDSSGDLILLKMNPGLWADKILQGKRFINSDFIILTNSNFSDTGK 165 Query: 388 -EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 + P ++P GR L+FS + L +D G+ + T + P W Sbjct: 166 KDSYVDTDPFFAPDGRHLVFSTDRLTPGIQNLVVLDTEGKEPMKLLTQKGGASPFWS 222 >gi|153212767|ref|ZP_01948403.1| tricorn protease [Vibrio cholerae 1587] gi|124116280|gb|EAY35100.1| tricorn protease [Vibrio cholerae 1587] Length = 1084 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGAVSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|242761183|ref|XP_002340131.1| G-protein beta WD-40 repeats containing protein, putative [Talaromyces stipitatus ATCC 10500] gi|218723327|gb|EED22744.1| G-protein beta WD-40 repeats containing protein, putative [Talaromyces stipitatus ATCC 10500] Length = 1611 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 74/419 (17%), Positives = 152/419 (36%), Gaps = 75/419 (17%) Query: 71 KDLQRSDVFNLISQDSF------------KQKITNPDSIPRFQDWNSLGAQVLVT---GR 115 DL S F+ Q + + ++ DW + G+ Sbjct: 1099 SDLVHSVAFSPDGQTLASGSRDETVKLWDIKTGSELQTLQGHSDW----VDSVAFSPDGQ 1154 Query: 116 VIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS-------------DDI 162 + G D V +LWDVK ++ + SS + H+++ D+ Sbjct: 1155 TLASGSDDETV--KLWDVKTGSELQTLQGHSS------LVHSVAFSPDGQTLASGSRDET 1206 Query: 163 Y-----------QSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 Q++ G G S +++ SG ++ + D + Sbjct: 1207 VKFWDVKTGSELQTLQGHSGSVYSVAFSPDGQTLASGSRDETVKLWDVKTGSELQTLQGH 1266 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +++ FSP+ Q +A + D+ V L D + + + + + FS +G+ Sbjct: 1267 SSLVYSVAFSPDGQTLASGSRDE----TVKLWDVKTGSELQTLQGHSGSVYSVAFSPDGQ 1322 Query: 271 RALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 S +DE + ++ D+++ + + L S ++SPD + SD E + Sbjct: 1323 TLA-SGSRDETVKLW--DVKTGSELQTLQGHSGSVYSVAFSPDGQTLASGSD---DETVK 1376 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 + + + Q S +SP G +A + + + +K GS+ + L Sbjct: 1377 LWDVKTGSELQTLQGHSDSVHSVAFSPNGQTLA-SGSHDKTVKLWDVKT-GSELQTLQGH 1434 Query: 390 SNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET------LINTPAYASDPQ 441 S+ + +SP G++L + D KL+ + +T L+++ A++ D Q Sbjct: 1435 SHWVHSVAFSPDGQTLASGSR---DETVKLWDVKTGSELQTLQGHSSLVDSVAFSPDGQ 1490 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 125/336 (37%), Gaps = 48/336 (14%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G D + V +L DVK ++ + H S +Y G Sbjct: 985 GQTLASGSDDMTV--KLCDVKTGSELQTLQ-----------GH--SGSVYSVAFSPDG-- 1027 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +++ SG ++ + D + ++ FSPN Q +A ++D Sbjct: 1028 --------QTLASGSHDKTVKLWDVKTGSELQTLQGHSSLVHSVAFSPNGQTLASGSHDK 1079 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D + + + ++ + FS +G+ S +DE + ++ D+++ + Sbjct: 1080 ----TVKLWDVKTGSELQTLQGHSDLVHSVAFSPDGQTLA-SGSRDETVKLW--DIKTGS 1132 Query: 294 TER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + L S ++SPD + SD E + + + + Q + Sbjct: 1133 ELQTLQGHSDWVDSVAFSPDGQTLASGSD---DETVKLWDVKTGSELQTLQGHSSLVHSV 1189 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKD 411 +SP G +A V K GS+ + L ++ + +SP G++L + Sbjct: 1190 AFSPDGQTLASGSRDETVKFWDV--KTGSELQTLQGHSGSVYSVAFSPDGQTLASGSR-- 1245 Query: 412 GDTGSKLYSIDLNGRNET------LINTPAYASDPQ 441 D KL+ + +T L+ + A++ D Q Sbjct: 1246 -DETVKLWDVKTGSELQTLQGHSSLVYSVAFSPDGQ 1280 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 112/316 (35%), Gaps = 40/316 (12%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 +LWDVK ++ + H S +Y G Sbjct: 1238 QTLASGSRDETVKLWDVKTGSELQTLQ-----------GH--SSLVYSVAFSPDG----- 1279 Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +++ SG ++ + D + ++ FSP+ Q +A + D+ Sbjct: 1280 -----QTLASGSRDETVKLWDVKTGSELQTLQGHSGSVYSVAFSPDGQTLASGSRDE--- 1331 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER 296 V L D + + + + + FS +G+ S DE + ++ D+++ + + Sbjct: 1332 -TVKLWDVKTGSELQTLQGHSGSVYSVAFSPDGQTLA-SGSDDETVKLW--DVKTGSELQ 1387 Query: 297 LTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 ++ S ++SP+ + S + + + + + Q +S Sbjct: 1388 TLQGHSDSVHSVAFSPNGQTLASGSH---DKTVKLWDVKTGSELQTLQGHSHWVHSVAFS 1444 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDT 414 P G +A + E + +K GS+ + L S + + +SP G++L+ D Sbjct: 1445 PDGQTLA-SGSRDETVKLWDVKT-GSELQTLQGHSSLVDSVAFSPDGQTLVSGSW---DK 1499 Query: 415 GSKLYSIDLNGRNETL 430 KL+ + +TL Sbjct: 1500 TVKLWDVKTGSELQTL 1515 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 124/348 (35%), Gaps = 45/348 (12%) Query: 108 AQVLVTGRVIKEGKD---RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ 164 ++ + ++ + + L+D ++ I+ + + A + + Sbjct: 880 SEAVAMIDAVQSSDGVSTDVEISGFLYD--AKRFILKNAYIAGIAPLQLYS--------- 928 Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR--DGANIR-YLTPSRDQILFEPRFSP 221 G S + + + G I L + + D + + FSP Sbjct: 929 -----SGLVFSPMQSIVRRIFPGSILKHLHIQPQVEDLWSPGLQTLEGHSGWVDSVAFSP 983 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + Q +A + D V L D + + + + + FS +G+ S D+ Sbjct: 984 DGQTLASGSDDM----TVKLCDVKTGSELQTLQGHSGSVYSVAFSPDGQTLA-SGSHDKT 1038 Query: 282 MDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + ++ D+++ + + L + S ++SP+ + S + + + + + Sbjct: 1039 VKLW--DVKTGSELQTLQGHSSLVHSVAFSPNGQTLASGSH---DKTVKLWDVKTGSELQ 1093 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSP 399 Q +SP G +A + E + +K GS+ + L S+ + +SP Sbjct: 1094 TLQGHSDLVHSVAFSPDGQTLA-SGSRDETVKLWDIKT-GSELQTLQGHSDWVDSVAFSP 1151 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNET------LINTPAYASDPQ 441 G++L D KL+ + +T L+++ A++ D Q Sbjct: 1152 DGQTLASGSD---DETVKLWDVKTGSELQTLQGHSSLVHSVAFSPDGQ 1196 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 70/183 (38%), Gaps = 32/183 (17%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G D V +LWDVK ++ + H SD ++ G Sbjct: 1363 GQTLASGSDDETV--KLWDVKTGSELQTLQ-----------GH--SDSVHSVAFSPNG-- 1405 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +++ SG ++ + D + + FSP+ Q +A + D+ Sbjct: 1406 --------QTLASGSHDKTVKLWDVKTGSELQTLQGHSHWVHSVAFSPDGQTLASGSRDE 1457 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D + + + S++ + FS +G+ + S D+ + ++ D+++ + Sbjct: 1458 ----TVKLWDVKTGSELQTLQGHSSLVDSVAFSPDGQTLV-SGSWDKTVKLW--DVKTGS 1510 Query: 294 TER 296 + Sbjct: 1511 ELQ 1513 >gi|157363040|ref|YP_001469807.1| hypothetical protein Tlet_0173 [Thermotoga lettingae TMO] gi|157313644|gb|ABV32743.1| conserved hypothetical protein [Thermotoga lettingae TMO] Length = 425 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 71/455 (15%), Positives = 146/455 (32%), Gaps = 100/455 (21%) Query: 14 KINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDL 73 + +L F +K+ S+ + + L VS+V+S Sbjct: 1 MRRFIIAFLLFCFFVCGLSGVQLKIEFKSSADTKI------------LVEDVSKVISS-- 46 Query: 74 QRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEF-RLWD 132 L+ + ++ + + G+ +L TG + + F +D Sbjct: 47 -------LLPEKTYLEITLD-------------GSNLLATGDSTQI-DTVYELTFIATYD 85 Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 K + +S ++A++ S S ++ + FV E + K S Sbjct: 86 ATQNK------YNASWYDQTQLAYSCS----YSPKDQRPYSD----FVRECAHYPLEKVS 131 Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L ++ D + FSP+ + A+ T + L+D + + Sbjct: 132 LWLLKNDQFEKYLRITYHPSVDEYGSFSPDGKYFAFITDRLSGNRNIALLDLQAGKIT-V 190 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ--SNATERLTNTLFINISASYS 310 + S PRFS +GKR L +IY + L+ S ++ + + Sbjct: 191 LPVAGSSEYFPRFSPDGKRLLFQGSLHGFWNIYVMPLENYSKNIVLISAGNNPAYNPCWY 250 Query: 311 PDS------------------------------------------SQIVFESDREGKEQL 328 D I F +E + Sbjct: 251 DDGTVLYVQDSEYGNRLLLSTIAKKRKQIEIPYPFEMVFSPTVYKDTIYFVGLKESDFGI 310 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 Y + S+G+ + ++ + DP SP G +A++ + I V ++ + + Sbjct: 311 YALTSDGTVT--VVENTVFNEHDPAISPDGRYLAYSCNITGYYTIWVKDLFTQEKWCITQ 368 Query: 389 D--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 D + P +SP G+ + FS +G+ ++ + Sbjct: 369 DIPHDAFYPVFSPDGKVVAFSVY-EGNFEPDIWFV 402 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 81/256 (31%), Gaps = 53/256 (20%) Query: 218 RFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPK--RIGNFRSMILAPRFSSNGKR 271 +SP Q+ Y+ + E + +V L + D+ K RI S+ FS +GK Sbjct: 106 SYSPKDQR-PYSDFVRECAHYPLEKVSLWLLKNDQFEKYLRITYHPSVDEYGSFSPDGKY 164 Query: 272 ALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + +I +DLQ+ L +SPD +++F+ G +YV Sbjct: 165 FAFITDRLSGNRNIALLDLQAGKITVLPVAGSSEYFPRFSPDGKRLLFQGSLHGFWNIYV 224 Query: 331 MQS-NGSDQKRISQDKEASYFDPVWSPQG------------------------------- 358 M N S + ++P W G Sbjct: 225 MPLENYSKNIVLISAGNNPAYNPCWYDDGTVLYVQDSEYGNRLLLSTIAKKRKQIEIPYP 284 Query: 359 -----------DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 D I F F I + DG+ + N P SP GR L +S Sbjct: 285 FEMVFSPTVYKDTIYFVGLKESDFGIYALTSDGTVTVVENTVFNEHDPAISPDGRYLAYS 344 Query: 408 RKKDGDTGSKLYSIDL 423 G ++ DL Sbjct: 345 CNITGYYT--IWVKDL 358 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 296 RLTNTLFINISASYSPDSSQIVFESDR-EGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 R+T ++ S+SPD F +DR G + ++ + + YF P + Sbjct: 145 RITYHPSVDEYGSFSPDGKYFAFITDRLSGNRNIALLDLQAGKITVLPVAGSSEYF-PRF 203 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKD--GSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKD 411 SP G + F + I VM + L+ +N P W G L +D Sbjct: 204 SPDGKRLLFQGSLHGFWNIYVMPLENYSKNIVLISAGNNPAYNPCWYDDGTVLYV---QD 260 Query: 412 GDTGSKLYSIDLNGRNETL 430 + G++L + + + + Sbjct: 261 SEYGNRLLLSTIAKKRKQI 279 >gi|153803128|ref|ZP_01957714.1| tricorn protease [Vibrio cholerae MZO-3] gi|124121347|gb|EAY40090.1| tricorn protease [Vibrio cholerae MZO-3] Length = 1084 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGAVSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|325281418|ref|YP_004253960.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] gi|324313227|gb|ADY33780.1| peptidase S41 [Odoribacter splanchnicus DSM 20712] Length = 1072 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 37/237 (15%) Query: 228 YATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + + + I+ Y D +++ + + PR S +GK + Q D + Sbjct: 27 FPHINGKQIVFSYAGDLYTVSDQGGTARKLTSDIGYEMFPRISPDGKYIAFTGQYDGNTE 86 Query: 284 IYSVDLQSNATERLT-------NTLFINISAS-----YSPDSSQIVFESDR----EGKEQ 327 ++ + RLT + L + + ++PDS I+F + + + Q Sbjct: 87 VFVIPSAGGIPRRLTYTATLNRDDLGDRMGPNNIVIGWTPDSKHILFRTRQFTFNDFTGQ 146 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----------TKFSGEKFAIGVM 376 L + + G + I +SP G +A+ G I + Sbjct: 147 LMTVPAEGGEAVEIPLKNGGFA---SYSPDGKKLAYNYVFREFRTWKRYQGGMADDIRIY 203 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 D Q + + ++ P WS G + F +D LY +L+ + + Sbjct: 204 DFDTHQSQKITDEIRQDIIPMWSADGNKIYFISDRDDIM--NLYVYNLSDKTTRQLT 258 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 131/331 (39%), Gaps = 41/331 (12%) Query: 142 KKFFSSPASWRKI-------AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 K++ A +I + I+D+I Q I ++I F+S+ +L Sbjct: 190 KRYQGGMADDIRIYDFDTHQSQKITDEIRQDIIPMWSADGNKIYFISDR----DDIMNLY 245 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY----------ATYDDEDILRVYLMDT 244 V + R LT ++D + P ++ Y + + V + + Sbjct: 246 VYNLSDKTTRQLTFNKDYDIKFPAL--GGDQIVYEQGGILYKFDTRTEKASPIPVEIDND 303 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL-FI 303 + P+ + I + NG+R +++ + D I+++ +S T LTN+ Sbjct: 304 QNWARPEWK-DVSGQISRMDVAPNGERVVVAARGD----IFTLPAKSGITYNLTNSSNAN 358 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + + +SPD I + SD+ G+ +++ + ++K +++D + FD W+P I + Sbjct: 359 DRNPQWSPDGKWIAYISDKNGEFNIWLRDAFTGEEKMLTKDLKTYIFDLKWAPDSRSILW 418 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 ++ V DG E + + + WS R + + + + D Sbjct: 419 SEKKNTLNLTQV--SDGKTEVIASSGVGPINSFNWSQDSRYITYI--QPEKEMDNIIIYD 474 Query: 423 LNGRNETL-------INTPAYASDPQWVGFM 446 N + + +++P ++ D +++ F+ Sbjct: 475 RNSKEKHQMTDGWYNVSSPNFSKDGKYLVFV 505 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 36/210 (17%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 NGK+ + S D +Y+V Q +LT+ + + SPD I F +G + Sbjct: 31 NGKQIVFSYAGD----LYTVSDQGGTARKLTSDIGYEMFPRISPDGKYIAFTGQYDGNTE 86 Query: 328 LYVMQSNGSDQKRISQ------DKEASYFDPV-----WSPQGDLIAFT----KFSGEKFA 372 ++V+ S G +R++ D P W+P I F F+ Sbjct: 87 VFVIPSAGGIPRRLTYTATLNRDDLGDRMGPNNIVIGWTPDSKHILFRTRQFTFNDFTGQ 146 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF---------SRKKDGDTGSKLYSIDL 423 + + +G + + N ++SP G+ L + ++ G + D Sbjct: 147 LMTVPAEGGEAVEIP-LKNGGFASYSPDGKKLAYNYVFREFRTWKRYQGGMADDIRIYDF 205 Query: 424 NGRNETLINT-------PAYASDPQWVGFM 446 + I P +++D + F+ Sbjct: 206 DTHQSQKITDEIRQDIIPMWSADGNKIYFI 235 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 101/303 (33%), Gaps = 53/303 (17%) Query: 177 ILFVSESVVSGIIKN--SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I F + + L + G R LT S PR SP+ + +A+ D Sbjct: 25 IRFPHINGKQIVFSYAGDLYTVSDQGGTARKLT-SDIGYEMFPRISPDGKYIAFTGQYDG 83 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMI-------LAPR-----FSSNGKRALISVQK---- 278 + + P+R+ ++ + P ++ + K L ++ Sbjct: 84 NTEVFVI--PSAGGIPRRLTYTATLNRDDLGDRMGPNNIVIGWTPDSKHILFRTRQFTFN 141 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI----VFESDREGK-------EQ 327 D + +V + + L ASYSPD ++ VF R K + Sbjct: 142 DFTGQLMTVPAEGGEAVEI--PLKNGGFASYSPDGKKLAYNYVFREFRTWKRYQGGMADD 199 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 + + + ++I+ + P+WS G+ I F + + V R L Sbjct: 200 IRIYDFDTHQSQKITDEIRQDII-PMWSADGNKIYFISDRDDIMNLYVYNLSDKTTRQLT 258 Query: 388 --EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD------ 439 +D +++ P G +++ + G LY D R E P + Sbjct: 259 FNKDYDIKFPALG--GDQIVY------EQGGILYKFDT--RTEKASPIPVEIDNDQNWAR 308 Query: 440 PQW 442 P+W Sbjct: 309 PEW 311 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 43/201 (21%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G + + + V + + + LT S + P++SP+ + +A Sbjct: 313 DVSGQISRMDVAPNGERVVVAARGDIFTLPAKSGITYNLTNSSNANDRNPQWSPDGKWIA 372 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-------- 279 Y + D ++L D + ++ I +++ + + L S +K+ Sbjct: 373 YIS-DKNGEFNIWLRDAFTGEEKMLTKDLKTYIFDLKWAPDSRSILWSEKKNTLNLTQVS 431 Query: 280 ----------------------------------EAMDIYSVDLQSNATERLTNTLFINI 305 E +I D S ++T+ + Sbjct: 432 DGKTEVIASSGVGPINSFNWSQDSRYITYIQPEKEMDNIIIYDRNSKEKHQMTDGWYNVS 491 Query: 306 SASYSPDSSQIVFESDREGKE 326 S ++S D +VF S R Sbjct: 492 SPNFSKDGKYLVFVSARTFNP 512 >gi|289642645|ref|ZP_06474786.1| serine/threonine protein kinase [Frankia symbiont of Datisca glomerata] gi|289507554|gb|EFD28512.1| serine/threonine protein kinase [Frankia symbiont of Datisca glomerata] Length = 740 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 25/267 (9%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS- 258 G R P ++ V Y D L D P + Sbjct: 472 GQPQRLTVDDTKPAALPVIVGPQRKTVLYTVIDSSPSLVAIAADGSGAPMPLFTSGPAAE 531 Query: 259 MILAP----RFSSNGKRALISVQK---DEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +++AP G+ +I + D +Y + ++ RL N S+SP Sbjct: 532 LVIAPDARASVDPTGRFVVIRAVRGPNDGLTGLYVAAVDGSSVRRL-NVPAGATDPSWSP 590 Query: 312 DSSQIVFESDREG--KEQLYVMQSN----GSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +IVF G L+ + ++ G+ +++ E DP WSP G +AF + Sbjct: 591 TGDRIVFFVGSGGVDGGALFTIDADPAAAGAKPVQLTPGTEGFDADPTWSPDGKKVAFRR 650 Query: 366 FSGEKF---AIGVMKKDGSQ--ERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKLY 419 + VM RL Q PT+ + G+ + F+ ++DG T ++Y Sbjct: 651 AFDPNLAETDVFVMDASPGATPLRLTEAPGRDQDPTFVAGDGKLIAFTSQRDGPTNREIY 710 Query: 420 SIDL----NGRNETLINTPAYASDPQW 442 + L + + P+W Sbjct: 711 VTSATAPDDANARKLTSFRGDDATPRW 737 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 31/203 (15%) Query: 268 NGKRALISVQKDEAMDIYSV----DLQSNATERLTNTLFINISAS-----YSPDSSQIVF 318 + + S +++ IYS+ D + +RLT + + P +++ Sbjct: 444 DDDTLVYSSEQEGRRAIYSLRVGPDGRPGQPQRLTVD---DTKPAALPVIVGPQRKTVLY 500 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ--------GDLIAFTKFSG-- 368 + L + ++GS + V +P G + G Sbjct: 501 TVI-DSSPSLVAIAADGSGAPMPLF-TSGPAAELVIAPDARASVDPTGRFVVIRAVRGPN 558 Query: 369 -EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN--- 424 + V DGS R L + P+WSP+G ++F G G L++ID + Sbjct: 559 DGLTGLYVAAVDGSSVRRLNVPAGATDPSWSPTGDRIVFFVGSGGVDGGALFTIDADPAA 618 Query: 425 -GRNETLIN--TPAYASDPQWVG 444 G + T + +DP W Sbjct: 619 AGAKPVQLTPGTEGFDADPTWSP 641 >gi|298242082|ref|ZP_06965889.1| peptidase S41 [Ktedonobacter racemifer DSM 44963] gi|297555136|gb|EFH89000.1| peptidase S41 [Ktedonobacter racemifer DSM 44963] Length = 1119 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 19/188 (10%) Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY 329 + + D ++ V + ERLT +SPD + + F EG ++Y Sbjct: 35 DYIVFVTEDD----LWLVSSEGGRAERLTAGQGRMSHPHFSPDGNWLAFVGREEGPGEVY 90 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG----EKFAIGVMKKDGSQERL 385 VM + G +R++ D + W+P G I + SG + I + G + Sbjct: 91 VMPALGGPARRLTFDG-GTCTVLGWTPDGGAILYASSSGQFTAKYTVIYAISPAGGPPQQ 149 Query: 386 LVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 L A ++ P G +I + R + G G +G + L+N Sbjct: 150 LPV-GMANAISYGPEGGVVIGRNIEEPAYWKRYRGGTVGHLWCDTTGSGTFQRLLNIHGN 208 Query: 437 ASDPQWVG 444 +DP WVG Sbjct: 209 VADPCWVG 216 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 73/252 (28%), Gaps = 67/252 (26%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L ++ +G LT + ++ P FSP+ +A+ +E VY+M + + Sbjct: 44 DLWLVSSEGGRAERLTAGQGRM-SHPHFSPDGNWLAFVG-REEGPGEVYVM-PALGGPAR 100 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDE----AMDIYSVDLQSNATERLTNTLFINIS- 306 R+ ++ +G L + + IY++ ++L + IS Sbjct: 101 RLTFDGGTCTVLGWTPDGGAILYASSSGQFTAKYTVIYAISPAGGPPQQLPVGMANAISY 160 Query: 307 ---------------------------------------------------ASYSPDSSQ 315 + + Sbjct: 161 GPEGGVVIGRNIEEPAYWKRYRGGTVGHLWCDTTGSGTFQRLLNIHGNVADPCWV--GKR 218 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 I F SD EG +Y G + R + +++ S G+ + + + V Sbjct: 219 IYFISDHEGVGNIYSCTPLGEELTRHTF--FDTFYARHLSTDGERLVLQSAAD----LYV 272 Query: 376 MKKDGSQERLLV 387 +Q R L Sbjct: 273 FDPATNQVRQLT 284 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 7/150 (4%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL--FINISASYSPDSSQIVFESDR 322 + ++G R + + +D S+ +L + I + P + + + R Sbjct: 351 WLNDGWRLVAICDSPGRETLVIIDPASDNEYKLLPDIEFGRVIELTVCPVENIVAITNHR 410 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDGS 381 ++L V+ + + +D WSP G +A++ S +K AI + + Sbjct: 411 ---QELIVVDLASGQHGVLDHSEHGRIYDLAWSPDGRWLAYSFACSAQKRAIKLGNLETG 467 Query: 382 QERLLVEDSNLQ-APTWSPSGRSLIFSRKK 410 + E +P + P GR L F + Sbjct: 468 ETHFATEPILADVSPAFDPEGRYLYFLGYR 497 Score = 43.5 bits (101), Expect = 0.080, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 78/262 (29%), Gaps = 44/262 (16%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + L V+D L S +++ +SP+ + +AY+ + L + Sbjct: 408 NHRQELIVVDLASGQHGVLDHSEHGRIYDLAWSPDGRWLAYSFACSAQKRAIKLGNLETG 467 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRAL---------------ISVQKDEAMDIYSVDLQSN 292 ++P F G+ + Y+V L+ + Sbjct: 468 -ETHFATEPILADVSPAFDPEGRYLYFLGYRVFNPLSDNLQFEWSFPRGVQPYAVPLRKD 526 Query: 293 ------ATERLTNTLFINISASYSPDSSQIVFESDREGK--------------EQLYVMQ 332 RLT L + P+ + D G ++Y+ Sbjct: 527 VRSPFVTETRLTQDL--RRRPGFVPEVAPAATADDSNGTEPQPAPTTQPPNTSNRVYI-D 583 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----FSGEKFAIGVMKKDGSQERLLV 387 +G ++ ++ + + + + +G ++ S + + D +RL Sbjct: 584 LDGITRRAVAFPTGEARYSGILAMRGRVLFLVHPLTGALSDGQSRGWIESFDIETQRLER 643 Query: 388 EDSNLQAPTWSPSGRSLIFSRK 409 N+ S +L++ + Sbjct: 644 IFDNVNEAMLSRDHNTLLYRSR 665 >gi|189468186|ref|ZP_03016971.1| hypothetical protein BACINT_04582 [Bacteroides intestinalis DSM 17393] gi|189436450|gb|EDV05435.1| hypothetical protein BACINT_04582 [Bacteroides intestinalis DSM 17393] Length = 1066 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 36/212 (16%) Query: 258 SMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 S P + S +G + + D +Y V + +LT + +SP Sbjct: 17 SYATTPLWMRDVQISPDGTEIVFCYKGD----LYKVPAKGGTATQLTTQDSYECTPIWSP 72 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK--FSGE 369 D QI F SDR G +++M +NG +R++ A+ ++P G I F+ Sbjct: 73 DGKQIAFASDRNGNFDIFIMSANGGTAQRLTT-HSATELPSAFTPDGKYILFSASIQDPA 131 Query: 370 KFAIG----------VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT----- 414 A+ V G E++L + +A + SG + +K G+ Sbjct: 132 SSALFPSAAMTELYKVPSVGGRTEQVLATPA--EAVCFDKSGNRFFYQDRKGGENEWRKH 189 Query: 415 -----GSKLYSIDL-NGRNETLINTPAYASDP 440 ++ D G + +P Sbjct: 190 HTSSITRDVWMYDAKTGSHTNFTQHAGEDRNP 221 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 61/355 (17%), Positives = 121/355 (34%), Gaps = 54/355 (15%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISD-----DIYQSITGEKGDFNSRILFVSESVV 185 +D K + + WRK H S +Y + TG +F +V Sbjct: 167 FD-KSGNRFFYQDRKGGENEWRK--HHTSSITRDVWMYDAKTGSHTNFTQHAGEDRNPIV 223 Query: 186 SGIIKNSLCVMDRDG-------------ANIRYLTPSRDQILFEPRFSPNQ------QKV 226 S + + +R+G +I+ +T + + S N Sbjct: 224 SPDGQTVYFLSERNGGSFNVYSFPVSQPQSIKTITSFKTHPVRFLSMSNNGTLCYGYDGE 283 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 Y + + ++ + R D+ + S +GK+ +V+ +++ Sbjct: 284 IYTQQESSNPRKINVEIIRDDQPQIAYLKHPDRATSATVSPDGKQIAFTVRG----EVFV 339 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM------QSNGSDQKR 340 T+++T+T S++PD+ + + S+R G Q+Y+ N + Sbjct: 340 TSTDYTTTKQITHTAAEEDGLSFAPDNRTLAYASERSGNWQIYLAKIVREEDPNFPNATL 399 Query: 341 ISQD-----KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 I ++ P +SP G +AF + + V+ + + R + + S + Sbjct: 400 IKEEVLLPSTTVERSHPQFSPDGKELAFIEDRN---RLMVLNLETKKVRRITDGSTWYST 456 Query: 396 T------WSPSGRS--LIFSRKKDGD-TGSKLYSIDLNGRNETLINTPAYASDPQ 441 + WSP + L F K + L S NG L N+ + P Sbjct: 457 SGGFDYAWSPDSKWFTLEFIGNKHDPYSDIGLVSAQGNGEIINLTNSGYSSGSPS 511 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 82/231 (35%), Gaps = 36/231 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++ + D+ +V ++ S P +S +GK+ + + Sbjct: 30 ISPDGTEIVFCY--KGDLYKV----PAKGGTATQLTTQDSYECTPIWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 + DI+ + +RLT + ++++PD I+F + + Sbjct: 84 NGNFDIFIMSANGGTAQRLTTHSATELPSAFTPDGKYILFSASIQDPASSALFPSAAMTE 143 Query: 328 LYVMQSNGSDQKR-ISQDKEASYFDPVWSPQGDLIAFTKFSGEK------------FAIG 374 LY + S G ++ ++ EA FD G+ + G + + Sbjct: 144 LYKVPSVGGRTEQVLATPAEAVCFDKS----GNRFFYQDRKGGENEWRKHHTSSITRDVW 199 Query: 375 VMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + P SP G+++ F +++G + +YS ++ Sbjct: 200 MYDAKTGSHTNFTQHAGEDRNPIVSPDGQTVYFLSERNGGS-FNVYSFPVS 249 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 58/340 (17%), Positives = 123/340 (36%), Gaps = 37/340 (10%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK V ++ V K+ + A ++ + + G+ Sbjct: 320 ATVSPDGKQIAFTVRGEVF-VTSTDYTTTKQITHTAAEEDGLSFAPDNRTLAYASERSGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + + +L L PS P+FSP+ +++A+ Sbjct: 379 WQIYLAKIVREEDPNFPNATLI-------KEEVLLPSTTVERSHPQFSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAP-----RFSSNGKR--ALISVQK-DEAMDI 284 ED R+ +++ + +RI + + +S + K K D DI Sbjct: 429 -EDRNRLMVLNLET-KKVRRITDGSTWYSTSGGFDYAWSPDSKWFTLEFIGNKHDPYSDI 486 Query: 285 YSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQ 332 V Q LTN+ + + S S++ D + I+F ++R G L + Sbjct: 487 GLVSAQGNGEIINLTNSGYSSGSPSFALDGNAILFTTERYGMRAHASWGSLDDAMLVFLN 546 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + D+ +S++ + + S + + A + + + + RL SN+ Sbjct: 547 QDAYDKFSLSKE-DYELYKEANSDRKKVAAKDSSKVKDVVVELKNIEDRIVRLTPNSSNM 605 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + S G++L + ++G L+ +DLN + L++ Sbjct: 606 GSTLISKDGKALYYLAST--ESGRNLWKMDLNKKETKLLH 643 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 32/211 (15%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K L + G LT +D P +SP+ +++A+A+ + + +++M + Sbjct: 41 YKGDLYKVPAKGGTATQLTT-QDSYECTPIWSPDGKQIAFASDRNGN-FDIFIM-SANGG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 +R+ + L F+ +GK L S + ++Y V TE++ Sbjct: 98 TAQRLTTHSATELPSAFTPDGKYILFSASIQDPASSALFPSAAMTELYKVPSVGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQ-------------LYVMQSNGSDQKRISQD 344 T + + ++ ++ DR+G E +++ + +Q Sbjct: 158 LATPAEAV--CFDKSGNRFFYQ-DRKGGENEWRKHHTSSITRDVWMYDAKTGSHTNFTQ- 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIG 374 +P+ SP G + F ++ +G F + Sbjct: 214 HAGEDRNPIVSPDGQTVYFLSERNGGSFNVY 244 >gi|254284774|ref|ZP_04959741.1| tricorn protease [Vibrio cholerae AM-19226] gi|150425559|gb|EDN17335.1| tricorn protease [Vibrio cholerae AM-19226] Length = 1084 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGAVSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|297579812|ref|ZP_06941739.1| tricorn protease [Vibrio cholerae RC385] gi|297535458|gb|EFH74292.1| tricorn protease [Vibrio cholerae RC385] Length = 1084 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 43/335 (12%), Positives = 100/335 (29%), Gaps = 97/335 (28%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDL-------------------I 361 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHHVNFNLEATEMVVAPNAAEV 347 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT------ 414 A + V+ + + + + ++S G LI++ +++G Sbjct: 348 AIVARGD----VYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSY 403 Query: 415 ---GSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 G K +S L+ E ++ T P + + Sbjct: 404 VNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHHVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|229527963|ref|ZP_04417354.1| protease-related protein [Vibrio cholerae 12129(1)] gi|229334325|gb|EEN99810.1| protease-related protein [Vibrio cholerae 12129(1)] Length = 1084 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGAVSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|297181014|gb|ADI17215.1| periplasmic component of the tol biopolymer transport system [uncultured delta proteobacterium HF0070_10I02] Length = 1070 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 13/255 (5%) Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 + +G L P +SP+ K+ ++ D + + L D D + Sbjct: 271 VKSNGETPAKLMSDGISTCMGPTWSPDGTKLLFSCVDPVEGSAILLRDADSDAEAEPEAL 330 Query: 256 FRSMILAPRFS--SNGKRALISVQK-----DEAMDIYSVDLQSNATERLTNTLFINISAS 308 + A FS S+GK S + D+Y L ++ LT + Sbjct: 331 IKG-AFAKNFSWRSDGKAFFFSATHTVDRFNLYDDVYFYQLGRKSSTLLTRGK-RARHPA 388 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 SPD ++ +++ + QL M + + D P +SP G +A +K+ Sbjct: 389 LSPDGKDLLVVTNKVQQNQLARMTIDQQIETLTELDGHEQIATPQFSPDGRYVAVSKWQD 448 Query: 369 EKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + I + +G R +V S+ Q PTWS GR L FS + G LY+I+L Sbjct: 449 GERDIWIYTAEGEPYRQIVSVGSHDQDPTWSADGRWLYFSSDRTG--IFNLYAIELESEK 506 Query: 428 E-TLINTPAYASDPQ 441 + N A P Sbjct: 507 LFQITNVLGGAFHPA 521 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 6/206 (2%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 + + F S + V +R + P SP+ + + Sbjct: 340 SWRSDGKAFFFSATHTVDRFNLYDDVYFYQLGRKSSTLLTRGKRARHPALSPDGKDLLVV 399 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALISVQKDEAMDIYSV 287 T + + L ID+ + + I P+FS +G+ +S +D DI+ Sbjct: 400 T---NKVQQNQLARMTIDQQIETLTELDGHEQIATPQFSPDGRYVAVSKWQDGERDIWIY 456 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + ++ + + ++S D + F SDR G LY ++ +I+ Sbjct: 457 TAEGEPYRQIVSVGSHDQDPTWSADGRWLYFSSDRTGIFNLYAIELESEKLFQITNVLGG 516 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAI 373 + F P P IAF FS I Sbjct: 517 A-FHPAPHPDAKRIAFESFSHNGMDI 541 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 94/290 (32%), Gaps = 9/290 (3%) Query: 141 GKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG 200 GK+ S ++ A +SD I + +++LF V G L D D Sbjct: 265 GKQAESVKSNGETPAKLMSDGISTCMGPTWSPDGTKLLFSCVDPVEGSA-ILLRDADSD- 322 Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY--LMDTRIDRAPKRIGNFRS 258 A + + + + ++ D +Y + ++ R + Sbjct: 323 AEAEPEALIKGAFAKNFSWRSDGKAFFFSATHTVDRFNLYDDVYFYQLGRKSSTLLTRGK 382 Query: 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN--ISASYSPDSSQI 316 P S +GK L+ K + + + + E LT + +SPD + Sbjct: 383 RARHPALSPDGKDLLVVTNKVQQNQLARMTID-QQIETLTELDGHEQIATPQFSPDGRYV 441 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 ++G+ +++ + G ++I DP WS G + F+ F + + Sbjct: 442 AVSKWQDGERDIWIYTAEGEPYRQIVSVGSHDQ-DPTWSADGRWLYFSSDRTGIFNLYAI 500 Query: 377 KKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 + + + + P P + + F S+ +G Sbjct: 501 ELESEKLFQITNVLGGAFHPAPHPDAKRIAFESFSHNGMDIVEASLGRDG 550 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 95/259 (36%), Gaps = 33/259 (12%) Query: 215 FEPRFSPN----QQKVA------YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + P + P Q++ A+ D+ + + + + K + + S + P Sbjct: 234 WIPYWLPTKRVFGQRLVPLYRGWKASLDERYGKQAESVKSNGETPAKLMSDGISTCMGPT 293 Query: 265 FSSNGKRALIS-VQKDEAMDIYSVDLQS---NATERLTNTLFINISASYSPDSSQIVFES 320 +S +G + L S V E I D S E L F + S+ D F + Sbjct: 294 WSPDGTKLLFSCVDPVEGSAILLRDADSDAEAEPEALIKGAFAK-NFSWRSDGKAFFFSA 352 Query: 321 ----DR-EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 DR + +Y Q +++ K A + P SP G + ++ + Sbjct: 353 THTVDRFNLYDDVYFYQLGRKSSTLLTRGKRARH--PALSPDGKDLLVVTNKVQQNQLAR 410 Query: 376 MKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-- 431 M D E L D + Q P +SP GR + S+ +DG+ ++ G I Sbjct: 411 MTIDQQIETLTELDGHEQIATPQFSPDGRYVAVSKWQDGER--DIWIYTAEGEPYRQIVS 468 Query: 432 -----NTPAYASDPQWVGF 445 P +++D +W+ F Sbjct: 469 VGSHDQDPTWSADGRWLYF 487 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 2/170 (1%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V + + +N L M D + + P+FSP+ + VA + + +D R + Sbjct: 399 VTNKVQQNQLARMTIDQQIETLTELDGHEQIATPQFSPDGRYVAVSKW--QDGERDIWIY 456 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 T ++I + S P +S++G+ S + ++Y+++L+S ++TN L Sbjct: 457 TAEGEPYRQIVSVGSHDQDPTWSADGRWLYFSSDRTGIFNLYAIELESEKLFQITNVLGG 516 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 + PD+ +I FES + + A F Sbjct: 517 AFHPAPHPDAKRIAFESFSHNGMDIVEASLGRDGWSEVGLVPSADTFAGS 566 >gi|309791760|ref|ZP_07686249.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] gi|308226203|gb|EFO79942.1| WD40 domain-containing protein [Oscillochloris trichoides DG6] Length = 322 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 29/255 (11%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE----------DILRVYLMDT 244 + G+ + L D ++P +P+ +++AY D+ L Sbjct: 40 IWQWRGSAAQALL--GDGNAWQPALAPDGRRIAYVRRDNSFSDVLLADASGAPLGQLTTN 97 Query: 245 RIDRAPKRIGNFRSMILA--PRFSSNGKRALISVQK---------DEAMDIYSVDLQSNA 293 + P + A P ++ G R +++ Q D + ++ + + Sbjct: 98 GSRQPPNSLARVYESTWAFYPTWAPTGDRLVVTGQAVPPSGDPPVDANLGLFELSVAGGY 157 Query: 294 TERLTNTLFINISAS-YSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQDKEASY 349 L + + S Y PD +++F +G++QLY++ + + + SY Sbjct: 158 QPMLYAAPNVQVGRSLYLPDGQRLLFVRSPNSADGQQQLYLLDLDTGAAEPFAAAPSPSY 217 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSLIFSR 408 DP SP G +AF G+ + + G L L + + +AP +SP GR + F Sbjct: 218 -DPAISPDGRWLAFAAQDGDGTDLFALPLAGGGTPLRLSDIGSARAPAFSPDGRQIAFLA 276 Query: 409 KKDGDTGSKLYSIDL 423 G+ G L+ DL Sbjct: 277 IAPGEGGFDLWVADL 291 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 36/225 (16%) Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF------------- 302 P + +G+R + + D+ D +LT Sbjct: 53 GDGNAWQPALAPDGRRIAYVRRDNSFSDVLLADASGAPLGQLTTNGSRQPPNSLARVYES 112 Query: 303 -INISASYSPDSSQIVFESD---REGKE------QLYVMQSNGSDQKRISQDKEASYFDP 352 +++P ++V G L+ + G Q + Sbjct: 113 TWAFYPTWAPTGDRLVVTGQAVPPSGDPPVDANLGLFELSVAGGYQPMLYAAPNVQVGRS 172 Query: 353 VWSPQGDLIAFTKF---SGEKFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 ++ P G + F + + + + ++ D G+ E S P SP GR L F+ Sbjct: 173 LYLPDGQRLLFVRSPNSADGQQQLYLLDLDTGAAEPFAAAPSPSYDPAISPDGRWLAFAA 232 Query: 409 KKDGDTGSKLYSIDLNGRNETL-------INTPAYASDPQWVGFM 446 +DGD G+ L+++ L G L PA++ D + + F+ Sbjct: 233 -QDGD-GTDLFALPLAGGGTPLRLSDIGSARAPAFSPDGRQIAFL 275 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 7/137 (5%) Query: 221 PNQQKVAYATYDDE--DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 P+ Q++ + + ++YL+D A + S P S +G+ + Q Sbjct: 176 PDGQRLLFVRSPNSADGQQQLYLLDLDTGAA-EPFAAAPSPSYDPAISPDGRWLAFAAQD 234 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF--ESDREGKEQLYVMQS--N 334 + D++++ L T + + + ++SPD QI F + EG L+V Sbjct: 235 GDGTDLFALPLAGGGTPLRLSDIGSARAPAFSPDGRQIAFLAIAPGEGGFDLWVADLIEE 294 Query: 335 GSDQKRISQDKEASYFD 351 + + + + + Sbjct: 295 AGGLRATTPRRLTNAWH 311 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 26/216 (12%) Query: 100 FQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTIS 159 + W G +++VTG+ + D D + A + Sbjct: 117 YPTWAPTGDRLVVTGQAVPPSGDPP------VDANLG--LFELSVAGGYQPMLYAAPNV- 167 Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 + +S+ G R+LFV S S + L ++D D + ++P Sbjct: 168 -QVGRSLYLPDG---QRLLFV-RSPNSADGQQQLYLLDLD-TGAAEPFAAAPSPSYDPAI 221 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI--SVQ 277 SP+ + +A+A D D ++ + P R+ + AP FS +G++ Sbjct: 222 SPDGRWLAFAAQD-GDGTDLFALPLAGGGTPLRLSDI-GSARAPAFSPDGRQIAFLAIAP 279 Query: 278 KDEAMDIYSVDL---QSN----ATERLTNTLFINIS 306 + D++ DL RLTN ++ Sbjct: 280 GEGGFDLWVADLIEEAGGLRATTPRRLTNAWHLDAD 315 >gi|198274139|ref|ZP_03206671.1| hypothetical protein BACPLE_00276 [Bacteroides plebeius DSM 17135] gi|198273217|gb|EDY97486.1| hypothetical protein BACPLE_00276 [Bacteroides plebeius DSM 17135] Length = 1084 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 35/247 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R SP+ +++ + DI +V + ++ S +P +S +GK+ + Sbjct: 30 RISPDGKEILFCY--KGDIYKV----SAKGGEAVQLTTQESYESSPVWSPDGKQIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKE 326 + D++ + + RLT I ++++PD IVF + Sbjct: 84 RFGNTDVFVMPANGGSARRLTTNSASEIPSAFTPDGKFIVFSASIQDPASSALFPTSAMT 143 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 +LY + + G ++I A + GD + S + Sbjct: 144 ELYKVSAEGGKTEQIL-GTPAEMVCFNVA--GDKFLYQDRKGFEDEWRKHHTSSITRDVW 200 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 + + L + + P S G+ + F +++ +YS L+ E + Sbjct: 201 MYDMASGKHTNLTKRAGEDRNPVLSSDGKEVFFLSERN-KGSFNVYSFPLD-NPEQVKPL 258 Query: 434 PAYASDP 440 ++++ P Sbjct: 259 TSFSTHP 265 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 107/263 (40%), Gaps = 34/263 (12%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +R+L+ D L ++ N + Y +V + TR D+ ++ Sbjct: 264 HPVRFLSLGGDGTLC---YTYNGE--IYTQKQGGKPSKVNVSLTRDDQEISVTLSYTRGA 318 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 S +GK+ V+ +++ ++ T+++T+T S+ D+ +V+ S Sbjct: 319 SEAVASPDGKQVAFIVRG----EVFVTSVEYGTTKQITHTPEAEEGLSFGADNRTLVYAS 374 Query: 321 DREGKEQLYVMQSNGSD-----------QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R+G QLY + + ++ + K P +SP G +AF + + Sbjct: 375 ERDGNWQLYKAEIERKEDLNFPNATLIKEEVLLPSKTVERMYPKFSPDGKEVAFIE---D 431 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDTGSKLYSI 421 + + V+ + ++ R + + S + WSP G+ L F K D + + + Sbjct: 432 RIRLKVLNLETNKVRQITDGSTWYSLSGGFNYAWSPDGKWFTLEFIGNKH-DPYTDIALV 490 Query: 422 DLNGRNE--TLINTPAYASDPQW 442 +G+ E L N+ +S P+W Sbjct: 491 SADGKGELVNLTNSGYTSSSPKW 513 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 30/221 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ ++VA+ + V++ K+I + F ++ + + + ++D Sbjct: 324 SPDGKQVAFIVRGE-----VFVTSVEYGT-TKQITHTPEAEEGLSFGADNRTLVYASERD 377 Query: 280 EAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGKEQ 327 +Y +++ N I +SPD ++ F DR + Sbjct: 378 GNWQLYKAEIERKEDLNFPNATLIKEEVLLPSKTVERMYPKFSPDGKEVAFIEDRI---R 434 Query: 328 LYVMQSNGSDQKRISQDKEASY----FDPVWSPQGDL--IAFTKFSGEKF-AIGVMKKDG 380 L V+ + ++I+ F+ WSP G + F + + I ++ DG Sbjct: 435 LKVLNLETNKVRQITDGSTWYSLSGGFNYAWSPDGKWFTLEFIGNKHDPYTDIALVSADG 494 Query: 381 SQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 E L +P W+ G +++F+ ++ G + Sbjct: 495 KGELVNLTNSGYTSSSPKWTMDGNAILFTTERYGMRNHASW 535 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 112/304 (36%), Gaps = 58/304 (19%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT ++ P +SP+ +++A+A+ + V++M Sbjct: 42 YKGDIYKVSAKGGEAVQLTT-QESYESSPVWSPDGKQIAFASDRFGNT-DVFVMPAN-GG 98 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDE-----------AMDIYSVDLQSNATERL 297 + +R+ + + F+ +GK + S + ++Y V + TE++ Sbjct: 99 SARRLTTNSASEIPSAFTPDGKFIVFSASIQDPASSALFPTSAMTELYKVSAEGGKTEQI 158 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T + ++ + +++ DR+G +++ +++ Sbjct: 159 LGTPAEMV--CFNVAGDKFLYQ-DRKGFEDEWRKHHTSSITRDVWMYDMASGKHTNLTK- 214 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT------- 396 + +PV S G + F ++ + F + D + E++ S P Sbjct: 215 RAGEDRNPVLSSDGKEVFFLSERNKGSFNVYSFPLD-NPEQVKPLTSFSTHPVRFLSLGG 273 Query: 397 -----WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY---------ASDPQW 442 ++ +G I+++K+ G ++ L ++ + T +Y + D + Sbjct: 274 DGTLCYTYNGE--IYTQKQGGKPSK--VNVSLTRDDQEISVTLSYTRGASEAVASPDGKQ 329 Query: 443 VGFM 446 V F+ Sbjct: 330 VAFI 333 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 14/128 (10%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP-- 263 L PS+ P+FSP+ ++VA+ ED +R+ +++ ++ ++I + + Sbjct: 406 LLPSKTVERMYPKFSPDGKEVAFI----EDRIRLKVLNLETNK-VRQITDGSTWYSLSGG 460 Query: 264 ---RFSSNGKR--ALISVQK-DEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQI 316 +S +GK K D DI V LTN+ + + S ++ D + I Sbjct: 461 FNYAWSPDGKWFTLEFIGNKHDPYTDIALVSADGKGELVNLTNSGYTSSSPKWTMDGNAI 520 Query: 317 VFESDREG 324 +F ++R G Sbjct: 521 LFTTERYG 528 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 7/48 (14%) Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE-TLINTPAYASDPQWVG 444 SP G+ ++F K +Y + G L +Y S P W Sbjct: 32 SPDGKEILFCYK------GDIYKVSAKGGEAVQLTTQESYESSPVWSP 73 >gi|51892094|ref|YP_074785.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] gi|51855783|dbj|BAD39941.1| acylaminoacyl-peptidase [Symbiobacterium thermophilum IAM 14863] Length = 739 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 26/240 (10%) Query: 214 LFEPRFSPNQQKVAYATYD----DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +P+ SP+ + VA+ ++ M P +PR+S +G Sbjct: 34 VSDPQISPDGEVVAFVRTHIDPESKEPRSRIWMAPAAGGEPVPFTQGPKNDTSPRWSPDG 93 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-----DREG 324 + + I+ +D +LT +SPD I F S DR Sbjct: 94 RTLAFVSDRGGDRQIWLIDRHGGEARQLTQMRHGAGDPVWSPDGRYIAFTSAVGPEDRRE 153 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE- 383 ++ +++ ++D+ ++ W I I V+ E Sbjct: 154 LLTRAKTDADKKAEEKKAKDEARTFTIMRWRSDAAGI----RPERWQQIWVVPVPRHGEP 209 Query: 384 -----RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYAS 438 ++ + + TWSP GR + F + D +L R+ + P S Sbjct: 210 MPKPVQVTWGNYDHGGATWSPDGRYIAFGANRTEDESLRL-------RDIFITPVPGEDS 262 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 50/363 (13%), Positives = 98/363 (26%), Gaps = 122/363 (33%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 S ++ + + G T PR+SP+ + +A+ + D +++L+D R Sbjct: 57 SKEPRSRIWMAPAAGGEPVPFTQGPKN-DTSPRWSPDGRTLAFVS-DRGGDRQIWLID-R 113 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------------------------- 277 +++ R P +S +G+ + Sbjct: 114 HGGEARQLTQMRHGAGDPVWSPDGRYIAFTSAVGPEDRRELLTRAKTDADKKAEEKKAKD 173 Query: 278 --KDEAMDIYSVDLQSNATER---------------------LTNTLFINISASYSPDSS 314 + + + D ER +T + + A++SPD Sbjct: 174 EARTFTIMRWRSDAAGIRPERWQQIWVVPVPRHGEPMPKPVQVTWGNYDHGGATWSPDGR 233 Query: 315 QIVFESDREGKE-----QLYVMQSNGSDQ------------------------------- 338 I F ++R E +++ G D Sbjct: 234 YIAFGANRTEDESLRLRDIFITPVPGEDSPAARASVAPPEPGAAEPGEEEAKALAEQLRK 293 Query: 339 ----------KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-----IGVMKKDGSQE 383 R ++ +SP G +A E I + +G + Sbjct: 294 AAEEAEAAFRPRNVTGGIGAFRAARFSPDGKTLAAIGHQNEYQNATLPRIYLYPVEGGEP 353 Query: 384 RLLVED--------SNLQAP-------TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 R+L P TWSP G + G +Y+ ++G Sbjct: 354 RILDHRDLEIGNSVGADVRPAGPGVEVTWSPDGGRICVPVVHRG--ACAVYTFPVSGDPP 411 Query: 429 TLI 431 L+ Sbjct: 412 QLL 414 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 10/108 (9%) Query: 345 KEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVEDS-NLQAPTW 397 + + DP SP G+++AF + + I + G + + N +P W Sbjct: 30 RFVTVSDPQISPDGEVVAFVRTHIDPESKEPRSRIWMAPAAGGEPVPFTQGPKNDTSPRW 89 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 SP GR+L F + GD +++ ID +G + + A DP W Sbjct: 90 SPDGRTLAFVSDRGGDR--QIWLIDRHGGEARQLTQMRHGAGDPVWSP 135 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 52/382 (13%), Positives = 101/382 (26%), Gaps = 122/382 (31%) Query: 167 TGEKGDFNSR-ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 T + + R + FVS+ + ++DR G R LT R +P +SP+ + Sbjct: 85 TSPRWSPDGRTLAFVSDRGGD----RQIWLIDRHGGEARQLTQMRHG-AGDPVWSPDGRY 139 Query: 226 VAYAT---------------------------------------------YDDEDILRVY 240 +A+ + E +++ Sbjct: 140 IAFTSAVGPEDRRELLTRAKTDADKKAEEKKAKDEARTFTIMRWRSDAAGIRPERWQQIW 199 Query: 241 LM----DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA-----MDIYSVDLQS 291 ++ P ++ +S +G+ + E DI+ + Sbjct: 200 VVPVPRHGEPMPKPVQVTWGNYDHGGATWSPDGRYIAFGANRTEDESLRLRDIFITPVPG 259 Query: 292 N------------------------------------------ATERLTNTLFINISASY 309 +T + +A + Sbjct: 260 EDSPAARASVAPPEPGAAEPGEEEAKALAEQLRKAAEEAEAAFRPRNVTGGIGAFRAARF 319 Query: 310 SPDSSQIVFESDREGK-----EQLYVMQSNGSDQKRISQ------DKEASYFDPV----- 353 SPD + + ++Y+ G + + + + + P Sbjct: 320 SPDGKTLAAIGHQNEYQNATLPRIYLYPVEGGEPRILDHRDLEIGNSVGADVRPAGPGVE 379 Query: 354 --WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK 410 WSP G I A+ G +LLV + T+ SGR L F+ Sbjct: 380 VTWSPDGGRICVPVVHRGACAVYTFPVSGDPPQLLVGGEREIYGGTFDRSGRRLAFAAGS 439 Query: 411 DGDTGSKLYSIDLNGRNETLIN 432 + G +Y DL E + Sbjct: 440 ISEIG-DIYVHDLTTGEERRLT 460 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 21/160 (13%) Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEA-----MDIYSVDLQSNATERL------ 297 P+ + A RFS +GK ++E IY ++ L Sbjct: 303 RPRNVTGGIGAFRAARFSPDGKTLAAIGHQNEYQNATLPRIYLYPVEGGEPRILDHRDLE 362 Query: 298 -TNTLFINISA-------SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 N++ ++ ++SPD +I G +Y +G D ++ E Sbjct: 363 IGNSVGADVRPAGPGVEVTWSPDGGRICVPVVHRGACAVYTFPVSG-DPPQLLVGGEREI 421 Query: 350 FDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLVE 388 + + G +AF S E I V +ER L Sbjct: 422 YGGTFDRSGRRLAFAAGSISEIGDIYVHDLTTGEERRLTA 461 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 19/181 (10%) Query: 218 RFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPKR------IGNFRSMILAPR--- 264 RFSP+ + +A + +E + R+YL IGN + P Sbjct: 318 RFSPDGKTLAAIGHQNEYQNATLPRIYLYPVEGGEPRILDHRDLEIGNSVGADVRPAGPG 377 Query: 265 ----FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 +S +G R + V A +Y+ + + + L ++ ++ F + Sbjct: 378 VEVTWSPDGGRICVPVVHRGACAVYTFPVSGDPPQLLVGGEREIYGGTFDRSGRRLAFAA 437 Query: 321 DR-EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 +YV +++R++ A + + W P+ + + F G VMK Sbjct: 438 GSISEIGDIYVHDLTTGEERRLTAVNAALFAEIEW-PEVEELNFKARDGWDLHGWVMKPV 496 Query: 380 G 380 G Sbjct: 497 G 497 Score = 36.9 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 9/77 (11%) Query: 377 KKDGSQERLLVED----SNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSID-LNGRN 427 S+ RL+ ED + P SP G + F R + S+++ G Sbjct: 15 PLSASKRRLIPEDLYRFVTVSDPQISPDGEVVAFVRTHIDPESKEPRSRIWMAPAAGGEP 74 Query: 428 ETLINTPAYASDPQWVG 444 P + P+W Sbjct: 75 VPFTQGPKNDTSPRWSP 91 >gi|148263039|ref|YP_001229745.1| peptidase S9B dipeptidylpeptidase IV subunit [Geobacter uraniireducens Rf4] gi|146396539|gb|ABQ25172.1| WD-40 repeat-containing protein [Geobacter uraniireducens Rf4] Length = 976 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 24/255 (9%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM--- 242 ++ + +++ + + + L PRFSP+ ++A+ D + + Sbjct: 291 KKEEQSRIATLEKAPFTPLKVLSTVGENLTNPRFSPDGGRLAFNVNDPHGHSKTVITSRD 350 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-----DEAMDIYSVDLQSNATERL 297 I +R + + + +S +G R + + D D+Y+ DL+ + +RL Sbjct: 351 GATIQAEFRRQFSDQGL----SWSPDGNRLYFAQAEVVRGFDIYQDLYAYDLRRDRVQRL 406 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS----NGSD---QKRISQDKEASYF 350 T+ L I SPD + G + L ++ + +G + + ++ ++ Sbjct: 407 TSGLRIKD-PEISPDGKYFALAVNDRGSQNLALLDARETLDGRNNLKPRLVTAYRQERVA 465 Query: 351 DPVWSPQGDLIAFTKFSG-EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSR 408 P W+P IA+ K ++ + Q+R LL N P+WS GR + + Sbjct: 466 TPRWAPDSRTIAYAVTDNRGKTSLRLYDVKSGQDRPLLTVSYNAAYPSWSRDGRIIYYVS 525 Query: 409 KKDGDTGSKLYSIDL 423 + G L++ DL Sbjct: 526 DETG--VYNLFAYDL 538 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 11/229 (4%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ F VV G + D R + + +P SP+ + A A D Sbjct: 375 RLYFAQAEVVRGFDIYQ-DLYAYDLRRDRVQRLTSGLRIKDPEISPDGKYFALAVNDRGS 433 Query: 236 ILRVYL-----MDTRIDRAPKRIGNFRS-MILAPRFSSNGKRALISVQKD-EAMDIYSVD 288 L +D R + P+ + +R + PR++ + + +V + + D Sbjct: 434 QNLALLDARETLDGRNNLKPRLVTAYRQERVATPRWAPDSRTIAYAVTDNRGKTSLRLYD 493 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 ++S L + S+S D I + SD G L+ ++S + Sbjct: 494 VKSGQDRPLLTVSYNAAYPSWSRDGRIIYYVSDETGVYNLFAYDLKEEKSYQVSHLLGGA 553 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 P +P D + F+ ++ F I + D + L + P W Sbjct: 554 -MQPDAAPDDDTLVFSSYTARGFNIASLTLDRNSWTL--QRGPSITPYW 599 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 20/154 (12%) Query: 305 ISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + +SPD ++ F +D G + + +G+ + ++ S WSP G+ + F Sbjct: 320 TNPRFSPDGGRLAFNVNDPHGHSKTVITSRDGATI-QAEFRRQFSDQGLSWSPDGNRLYF 378 Query: 364 -----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + + L ++ P SP G+ + G L Sbjct: 379 AQAEVVRGFDIYQDLYAYDLRRDRVQRLTSGLRIKDPEISPDGKYFALAVNDRGSQNLAL 438 Query: 419 YSI--DLNGRN-----------ETLINTPAYASD 439 L+GRN + + TP +A D Sbjct: 439 LDARETLDGRNNLKPRLVTAYRQERVATPRWAPD 472 >gi|255548307|ref|XP_002515210.1| conserved hypothetical protein [Ricinus communis] gi|223545690|gb|EEF47194.1| conserved hypothetical protein [Ricinus communis] Length = 618 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 104/315 (33%), Gaps = 65/315 (20%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 + G F S + + L ++ +G+ R+ SRD+ F +SP ++ Sbjct: 280 RLLRLNGSFASYSPDSDYIAFNAGLSQGLHIVRSNGS-KRWTLFSRDRTAFYTSWSPTEK 338 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 V Y T V+ R + + F + D D Sbjct: 339 NVIYTTLGP-----VFAHVNRTVQIARV-----------TFDPS----------DLKPDR 372 Query: 285 YSVDLQSNATERLT-NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK---R 340 + + LT N + SPD +VF S R G + LY+M + + K R Sbjct: 373 NEIPCD---VKMLTGEDSGNNAFPACSPDGKYLVFRSGRSGHKNLYIMDAVEGEFKGDIR 429 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSG-----EKFAIGVMKKDGSQERLLVEDS----- 390 + P WSP+GDLIAF+ F+I V+K DGS R + + Sbjct: 430 PLTEGACIDTMPCWSPKGDLIAFSSNRHKPEHANPFSIYVIKPDGSGLRRIHLEGSERLS 489 Query: 391 --------NLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETL 430 + T+S G L+F+ G +Y L+G Sbjct: 490 EEEREWMERINHVTFSSDGEWLLFTANLGGLSAEPVAVPRQIQPYGDIYVARLDGSGLRR 549 Query: 431 INTPAY-ASDPQWVG 444 + Y P W Sbjct: 550 LTWNGYENGTPVWYP 564 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 97/311 (31%), Gaps = 88/311 (28%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA-----PKRIGNFRSMILAPRFSSNGK 270 P +S + + + D+ ++ ++ D + P R+ L P +GK Sbjct: 141 WPTWSGD-STIYFHRKADDGFWSIFQVNFSDDLSELPCAPVRVTPPGVHCLTPAAMHDGK 199 Query: 271 RALISVQKDE--AMDIYSVDLQSNA---TERLTNTLFINISA------------------ 307 R +++ ++ I D+ S +L N F + + Sbjct: 200 RIVVATRRRGKVHRHIEIFDIVSKTFYPVTQLINPSFQHYNPFVSQDSLFIGYHRFRGES 259 Query: 308 ------------------------------SYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 SYSPDS I F + + L++++SNGS Sbjct: 260 APGETTIPNLEPVKSPIEGIRLLRLNGSFASYSPDSDYIAFNA--GLSQGLHIVRSNGS- 316 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGS---------- 381 ++ ++ + F WSP + +T I + D S Sbjct: 317 KRWTLFSRDRTAFYTSWSPTEKNVIYTTLGPVFAHVNRTVQIARVTFDPSDLKPDRNEIP 376 Query: 382 -QERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-----NGRNETLINT 433 ++L + N P SP G+ L+F + G LY +D G L Sbjct: 377 CDVKMLTGEDSGNNAFPACSPDGKYLVFRSGRSGHK--NLYIMDAVEGEFKGDIRPLTEG 434 Query: 434 PAYASDPQWVG 444 + P W Sbjct: 435 ACIDTMPCWSP 445 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 23/159 (14%) Query: 284 IYSVDL--QSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQLYVMQ 332 +Y++DL + N+ RLT I+ S + S I S + V + Sbjct: 66 LYAIDLNQEGNSVTRLTPYGVIDYSPAVSLSGKYIAVGSYGSRIWDVEFQMLTTDIVVFK 125 Query: 333 SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDG-------SQER 384 + + + + ++ P WS I F + + + F +I + + R Sbjct: 126 QSDPENRVVVCERGG---WPTWSGDST-IYFHRKADDGFWSIFQVNFSDDLSELPCAPVR 181 Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + P G+ ++ + ++ G + D+ Sbjct: 182 VTPPGVHCLTPAAMHDGKRIVVATRRRGKVHRHIEIFDI 220 >gi|116620945|ref|YP_823101.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116224107|gb|ABJ82816.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 667 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 113/348 (32%), Gaps = 45/348 (12%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSG----- 187 V + K + PA + T + D Q I+ + +S + + Sbjct: 43 VSNAKGLRNIMVAEPPAYVGRKITTYAADDGQEISDLRWTPDSSAIVYVRGGSANPALDP 102 Query: 188 -IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 + ++ DG R + P SP KV + +++ Sbjct: 103 AGVTQAIWRAALDGTAARKIGEGN-----APAVSPKGDKVVFI-----RAGQLWWAPLDG 152 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 ++ R PR+S +G R + + + I D+ + A L + + Sbjct: 153 KAEASQVFQARGACDRPRWSPDGARISFTSARGDHGFIGVFDVAAGALRYLDPSTDNDSE 212 Query: 307 ASYSPDSSQIVFES------------DREGKE-QLYVMQSNGSDQKRISQDKEA------ 347 +SPD + F R G+ + + ++ + + +E Sbjct: 213 PEWSPDGRSVAFLRVPSSGVRMPREPHRTGEPWSIRIADAHTGAGREVFHAREGAGSVFR 272 Query: 348 --SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + + + G+ + F + + +G + LL + + SG+ ++ Sbjct: 273 GVNARNQILWADGNRLVFPWEPEGWTHLYAVSTEGGKATLLT-PGKFEVEDVAVSGKQVL 331 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINT-------PAYASDPQWVGFM 446 +S +D L+ + +G T I + PA SDP + F+ Sbjct: 332 YSSNQDDIDRRHLWKVAADGGVPTAITSGQGIECQPAPTSDPNVITFL 379 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 25/194 (12%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI----SASYSPDSSQIVFESD 321 + G + +I + + ++T + ++PDSS IV+ Sbjct: 34 APAGGKVAWVSNAKGLRNIMVAEPPAYVGRKITTYAADDGQEISDLRWTPDSSAIVYVRG 93 Query: 322 REGKE---------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 ++ +G+ ++I E + P SP+GD + F + Sbjct: 94 GSANPALDPAGVTQAIWRAALDGTAARKI---GEGN--APAVSPKGDKVVFIRAG----Q 144 Query: 373 IGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + DG E ++ P WSP G + F+ + ++ + G L Sbjct: 145 LWWAPLDGKAEASQVFQARGACDRPRWSPDGARISFTSARGDHGFIGVFDV-AAGALRYL 203 Query: 431 INTPAYASDPQWVG 444 + S+P+W Sbjct: 204 DPSTDNDSEPEWSP 217 >gi|254224604|ref|ZP_04918220.1| tricorn protease [Vibrio cholerae V51] gi|125622667|gb|EAZ50985.1| tricorn protease [Vibrio cholerae V51] Length = 1084 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGAVSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 28/211 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEV 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG 412 + L + + AP +S G+ + + G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKG 541 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 99/288 (34%), Gaps = 45/288 (15%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV- 489 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT--------PAYASDPQWVGFM 446 + + + + +G + + P +++D QWV ++ Sbjct: 490 -TRDRAMSNGDIQLLKFDGSEVPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 19/171 (11%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + +++ +GS+ S F P +S G + + + I Sbjct: 495 MSNGDIQLLKFDGSEVPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDI 545 >gi|156742759|ref|YP_001432888.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] gi|156234087|gb|ABU58870.1| peptidase S41 [Roseiflexus castenholzii DSM 13941] Length = 1117 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 15/177 (8%) Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D+++V RLT S + SPD + + F EG +++VM + G + +R Sbjct: 22 EDDLWTVPASGGVARRLTANPGSVQSPALSPDGALLAFVGRDEGPGEVFVMPAEGGEARR 81 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKKDGSQERLLVEDSNLQAPT 396 ++ A+ W G I F + F+ + ++ DG + RLL + + Sbjct: 82 LTFLG-ATMRVCGWGRNGREILFASSASLPFSRMALLYAIRADGGEPRLLPTGPAVTI-S 139 Query: 397 WSPSGRSLI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + P+G ++I + R + G TG D G LI P + P WVG Sbjct: 140 YGPTGGAVIGRNESDPARWKRYRGGRTGDVWIDPDGTGEWRRLIALPGNIAIPLWVG 196 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 22/190 (11%) Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 +R+ + +P S +G + + +++ + + RLT Sbjct: 31 SGGVARRLTANPGSVQSPALSPDGALLAFVGRDEGPGEVFVMPAEGGEARRLTFLGATMR 90 Query: 306 SASYSPDSSQIVFESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + + +I+F S LY ++++G + + + + P G + Sbjct: 91 VCGWGRNGREILFASSASLPFSRMALLYAIRADGGEPRLL---PTGPAVTISYGPTGGAV 147 Query: 362 A---------FTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKK 410 + ++ G + + DG+ E RL+ N+ P W G + F Sbjct: 148 IGRNESDPARWKRYRGGRTGDVWIDPDGTGEWRRLIALPGNIAIPLWV--GERIYFVSDH 205 Query: 411 DGDTGSKLYS 420 +G LYS Sbjct: 206 EG--VGNLYS 213 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 30/255 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G R LT + P SP+ +A+ D E V++M + Sbjct: 24 DLWTVPASGGVARRLTA-NPGSVQSPALSPDGALLAFVGRD-EGPGEVFVMPAE-GGEAR 80 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMD----IYSVDLQSNATERLTNTLFINISA 307 R+ + + + NG+ L + +Y++ L + IS Sbjct: 81 RLTFLGATMRVCGWGRNGREILFASSASLPFSRMALLYAIRADGGEPRLLPTGPAVTIS- 139 Query: 308 SYSPDSSQIV---------FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 Y P ++ ++ R G+ + +G+ + R + P+W G Sbjct: 140 -YGPTGGAVIGRNESDPARWKRYRGGRTGDVWIDPDGTGEWRRLIALPGNIAIPLWV--G 196 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 + I F + G + + + P S GR +++ G+ Sbjct: 197 ERIYFVSDHEGVGNLYSCLPTGDDLQRHTWHREYYARFP--STDGRRIVY------HAGA 248 Query: 417 KLYSIDLNGRNETLI 431 LY D I Sbjct: 249 DLYLFDPATNTSRRI 263 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 31/204 (15%) Query: 265 FSSNGKRALISVQKDE--AMDIYSVDLQSNATE--------------------RLTN-TL 301 + +G+R ++ ++I+SV + RL + Sbjct: 331 WLPDGRRIVVVSDAVGEETLEIHSVAFSNGGQRAAASDAAAVDAALSPFDAPVRLEGLDI 390 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++ + SP + + ++R +L ++ + + + + AS WSP G + Sbjct: 391 GRPMALAVSPKAPLVAVANNR---NELLLVDLTERTVRLLDRSRYASMLGIAWSPDGRWL 447 Query: 362 AFTKF-SGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 A+ + +G+ I V + + ++P + P G+ L F +D D Sbjct: 448 AYGFWETGQTSIIKVCEVATGTITPVTRPVLVDRSPAFDPEGKYLYFISSRDFDPVYDDM 507 Query: 420 SIDLN---GRNETLINTPAYASDP 440 DL G L+ A P Sbjct: 508 HFDLGFPRGTRPFLVTLRANLRSP 531 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP VA A +E +L T R + + +S +G+ Sbjct: 397 AVSPKAPLVAVANNRNELLLVDLTERTVRLLDRSRYASMLGI----AWSPDGRWLAYGFW 452 Query: 278 KDEAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 + I V ++ + +T + ++ S ++ P+ + F S R+ Sbjct: 453 ETGQTSIIKVCEVATGTITPVTRPVLVDRSPAFDPEGKYLYFISSRD 499 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 +N L ++D +R L SR + +SP+ + +AY ++ + + + Sbjct: 409 NNRNELLLVDLTERTVRLLDRSRYASMLGIAWSPDGRWLAYGFWETGQTSIIKVCEVATG 468 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + +P F GK +D Sbjct: 469 TIT-PVTRPVLVDRSPAFDPEGKYLYFISSRDFDP 502 >gi|322371404|ref|ZP_08045953.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] gi|320548936|gb|EFW90601.1| peptidase S9 prolyl oligopeptidase active site domain protein [Haladaptatus paucihalophilus DX253] Length = 676 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 97/242 (40%), Gaps = 25/242 (10%) Query: 214 LFEPRFSPNQQKVAYATYDDED----ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + +P+ SP+ ++VA+ +D VY++ PK+ + +PR+S +G Sbjct: 15 VTDPQVSPDGERVAFVRSVPKDDEKYEATVYVVPLG-GDEPKQFTISEGVDSSPRWSPSG 73 Query: 270 KRALISVQK---DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDREG 324 R + D+ ++ + ++T+ ++SPD ++I F S + Sbjct: 74 DRLAFVSTRGADDDRPQLWVMPTAGGEARQVTDVAGGVSQLAWSPDGTKIAFVQSSTEDD 133 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 +++ + +G + + + D + G + F G++ + + D Sbjct: 134 RDEERDVSLDGEEYEPETPDPRVIDRKIYRA--GT----SYFDGKRSHVYLADLDDDSVE 187 Query: 385 LLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL------YSIDLNGRNETLINTPAYA 437 L + D + AP W +L F +++ D + Y ID + ETL T A+ Sbjct: 188 RLTDGDFDFAAPDWG-DETTLYFGAEREDDPDDNIIVDVVAYDIDAD-EEETLFQTSAWG 245 Query: 438 SD 439 + Sbjct: 246 AS 247 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 45/321 (14%), Positives = 97/321 (30%), Gaps = 62/321 (19%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ FV + + G + + + PR+SP+ ++A+ + D Sbjct: 26 RVAFVRSVPKDDEKYEATVYVVPLGGDEPKQFTISEGVDSSPRWSPSGDRLAFVSTRGAD 85 Query: 236 ILRVYLMDTRI-DRAPKRIGNFRSMILAPRFSSNGKRALI-------------------- 274 R L +++ + + +S +G + Sbjct: 86 DDRPQLWVMPTAGGEARQVTDVAGGVSQLAWSPDGTKIAFVQSSTEDDRDEERDVSLDGE 145 Query: 275 ---------------------SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 S + +Y DL ++ ERLT+ F + + D Sbjct: 146 EYEPETPDPRVIDRKIYRAGTSYFDGKRSHVYLADLDDDSVERLTDGDFDFAAPDWG-DE 204 Query: 314 SQIVFESDREGKEQLYVM------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + + F ++RE ++ + +++ + Q + G IA+ Sbjct: 205 TTLYFGAEREDDPDDNIIVDVVAYDIDADEEETLFQTSAWGASLAA-TEDGR-IAYIYSP 262 Query: 368 GEKFAIG-----VMKKDGSQERLLVEDSN---LQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 E + V + + L E + AP W P + F +GD ++ Sbjct: 263 EENATLRQADLKVFDRGTGETVTLTETLDRTVAIAPEWDPEEERVYFGTPDEGDQ--VIW 320 Query: 420 SIDLNGRNE-TLINTPAYASD 439 +G E + + +D Sbjct: 321 RARGDGSEELQRVVGDGHITD 341 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%) Query: 348 SYFDPVWSPQGDLIAFTKF---SGEKFA--IGVMKKDGSQERLLV-EDSNLQAPTWSPSG 401 S DP SP G+ +AF + EK+ + V+ G + + + +P WSPSG Sbjct: 14 SVTDPQVSPDGERVAFVRSVPKDDEKYEATVYVVPLGGDEPKQFTISEGVDSSPRWSPSG 73 Query: 402 RSLIFSRKKDGDTG-SKLYSIDLNGRNETLINT-PAYASDPQWVG 444 L F + D +L+ + G + S W Sbjct: 74 DRLAFVSTRGADDDRPQLWVMPTAGGEARQVTDVAGGVSQLAWSP 118 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 24/228 (10%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 R ++ + + ++ + + D D ++ LT D P + ++ + + ++ Sbjct: 158 DRKIYRAGTSYFDGKRSHVYLADLDDDSVERLTDG-DFDFAAPDW-GDETTLYFGAERED 215 Query: 235 DI-----LRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 D + V D D + LA +G R +E + D Sbjct: 216 DPDDNIIVDVVAYDIDADEEETLFQTSAWGASLAATE--DG-RIAYIYSPEENATLRQAD 272 Query: 289 LQ-----SNATERLTNTLFINIS--ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ-KR 340 L+ + T LT TL ++ + P+ ++ F + EG + ++ + +GS++ +R Sbjct: 273 LKVFDRGTGETVTLTETLDRTVAIAPEWDPEEERVYFGTPDEGDQVIWRARGDGSEELQR 332 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFS-GEKFAIGVMKKDGSQERLLV 387 + D + F S D +A+ K + V G++ L Sbjct: 333 VVGDGHITDF----SVGADAVAYVKSEWDHPGDLFVSTPGGAETHRLT 376 >gi|134080129|emb|CAK46110.1| unnamed protein product [Aspergillus niger] Length = 719 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 99/340 (29%), Gaps = 86/340 (25%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANI-RYLTPSRDQILFEPRFSPNQQKVAY 228 + I + + G L + + DG N + L + + P +S + + + + Sbjct: 83 PIEGKKGIFYRLQVNRIGPSGGQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVF 142 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSV 287 + + + S+ S NGK S Q + +I+ Sbjct: 143 TSERRGPGQSDLYRVRVDGSGLETLAATDSVEDIGVLSPNGKTLAYVSTQGNYTTNIWVK 202 Query: 288 DLQSNATERLTNTLFINIS---------ASYSPDSSQIVFESDR--------EGKE---- 326 DL S + LT+T S+SPD IVF SDR +G Sbjct: 203 DLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHT 262 Query: 327 ---QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------------- 370 +Y ++ +GSD + + + + S P +SP G I + + E Sbjct: 263 QTLGVYAVRPDGSDFRTVIRQEGYSLGTPQFSPDGKRIIYNNMTTEDTYGCHGVSAQQEA 322 Query: 371 --FAIGVMKKDGSQERLLVEDS-------------------------------------- 390 I + + Sbjct: 323 VTAQIYSVDFATGSNVIAHTSGSYPKVGQHYIGNSTNIGYLIKAGDYEGIHYTKPDFTHR 382 Query: 391 -----NLQAPTWSPSGRSLIFS--RKKDGDTGSKLYSIDL 423 N++ P WSP G L++ KL+S D Sbjct: 383 SFNLTNMRDPWWSPDGSKLVYWVPNWTQQAAELKLWSYDT 422 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 43/231 (18%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL------ISVQKDEAMDIYSVDLQSNAT 294 + + + + S P ++ +G + + IY Sbjct: 475 IYNISNSTEVEWLEEGNSGAFQPSWNPDGTELVSGFGAWFVSRTTNTAKIYHAFANGTWH 534 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKE---QLYVMQSNGSDQKRISQDKEASYFD 351 LT+ + S+SPD S IV+ E L+++ +++ + Sbjct: 535 TNLTDGSDNSGFPSWSPDGSAIVYRKWSLATEAPLGLHILNFTTGKTHQLT---DGWDNT 591 Query: 352 PVWSPQGDLIAFTKFSG-----------EKFAIGVMKKDGSQERLLVEDSNLQAPTWSP- 399 P WSP G+ I FT+ + ++F I ++ DGS+ + + + A P Sbjct: 592 PGWSPDGERIVFTRNNNWTESYGARWYADRFDIYTIRPDGSELTRVTDSLSNDAQYVYPS 651 Query: 400 ------SGRSLIFSRKKDG------------DTGSKLYSIDLNGRNETLIN 432 GR +++S + G ++ ++ +G N+TL+ Sbjct: 652 LFLDFTDGR-IMWSSGQYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVT 701 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 35/209 (16%) Query: 270 KRALISVQKDE----AMDIYSVDLQSNATERLT--NTLFINISASYSPDSSQIVFESDRE 323 K +Q + ++ + +L + + ++S D IVF S+R Sbjct: 88 KGIFYRLQVNRIGPSGGQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERR 147 Query: 324 GKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDG 380 G Q LY ++ +GS + ++ V SP G +A+ G I V Sbjct: 148 GPGQSDLYRVRVDGSGLETLAATDSVEDIG-VLSPNGKTLAYVSTQGNYTTNIWVKDLAS 206 Query: 381 SQERLLVEDSNLQA----------PTWSPSGRSLIFSRKKDGDTGSK------------- 417 Q + L + ++ +A P+WSP G ++FS ++ D Sbjct: 207 GQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLG 266 Query: 418 LYSIDLNGRN-ETLINTPAYA-SDPQWVG 444 +Y++ +G + T+I Y+ PQ+ Sbjct: 267 VYAVRPDGSDFRTVIRQEGYSLGTPQFSP 295 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 21/141 (14%) Query: 325 KEQLYVMQSNGSDQKRISQDK-EASYFDPVWSPQGDLIAFT--KFSGEKFAIGVMKKDGS 381 QL++ S+G++ ++ ++ A + P WS G+ I FT + + + ++ DGS Sbjct: 103 GGQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGPGQSDLYRVRVDGS 162 Query: 382 QERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINT------ 433 L +++ SP+G++L + + G+ + ++ DL +G+ + L +T Sbjct: 163 GLETLAATDSVEDIGVLSPNGKTLAYVSTQ-GNYTTNIWVKDLASGQAQNLTDTASNRAD 221 Query: 434 ---------PAYASDPQWVGF 445 P+++ D +W+ F Sbjct: 222 NTWPTGHFRPSWSPDGEWIVF 242 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 58/361 (16%), Positives = 108/361 (29%), Gaps = 105/361 (29%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQIL--------FEPRFSPNQQKVAYAT-------- 230 G ++ V D + LT + F P +SP+ + + +++ Sbjct: 193 GNYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTG 252 Query: 231 ------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---------- 274 ++ L VY + I + P+FS +GKR + Sbjct: 253 HSDGTGWEHTQTLGVYAVRPDGSDFRTVIRQEGYSLGTPQFSPDGKRIIYNNMTTEDTYG 312 Query: 275 -----SVQKDEAMDIYSVDLQSN--------------ATERLTNTLFINI---------- 305 + Q+ IYSVD + + N+ I Sbjct: 313 CHGVSAQQEAVTAQIYSVDFATGSNVIAHTSGSYPKVGQHYIGNSTNIGYLIKAGDYEGI 372 Query: 306 ------------------SASYSPDSSQIVFE--SDREGKEQLYVMQSNGSDQKRISQ-- 343 +SPD S++V+ + + +L + + + R Sbjct: 373 HYTKPDFTHRSFNLTNMRDPWWSPDGSKLVYWVPNWTQQAAELKLWSYDTEWEYRYMDVF 432 Query: 344 -------DKEASYFDPVWSPQGDLI----AFTKFSG--EKFAIGVMKKDGSQERLLVEDS 390 ++ AS + S G L+ +T + + I + E L +S Sbjct: 433 PMHNTVINRIASTQKVLGSANGSLVHSSPVYTDVVDALDSYDIYNISNSTEVEWLEEGNS 492 Query: 391 NLQAPTWSPSGRSLI------FSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWV 443 P+W+P G L+ F + +K+Y NG T L + + P W Sbjct: 493 GAFQPSWNPDGTELVSGFGAWFVSRT--TNTAKIYHAFANGTWHTNLTDGSDNSGFPSWS 550 Query: 444 G 444 Sbjct: 551 P 551 Score = 43.9 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 67/267 (25%) Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 G F S + KI H ++ + + + D + + + K SL Sbjct: 510 FGAWFVSRTTNTAKIYHAFANGTWHTNLTDGSDNSGFPSWSPDGSAIVYRKWSLATEAPL 569 Query: 200 GANIRYLTPSR-----DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 G +I T + D P +SP+ +++ + Sbjct: 570 GLHILNFTTGKTHQLTDGWDNTPGWSPDGERIVFTRN----------------------- 606 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 N + R+ ++ DIY++ + R+T++L + Sbjct: 607 NNWTESYGARWYAD------------RFDIYTIRPDGSELTRVTDSLSNDA--------- 645 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 Q V+ S +M S+G + E++ FD + P G I Sbjct: 646 QYVYPSLFLDFTDGRIMWSSG----QYGFKDESALFDDTFQPYG-------------QIM 688 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPS 400 VM DG+ + L+ + P + P+ Sbjct: 689 VMNYDGTNKTLVTDTIWEDSMPLYMPN 715 >gi|67524721|ref|XP_660422.1| hypothetical protein AN2818.2 [Aspergillus nidulans FGSC A4] gi|40743737|gb|EAA62924.1| hypothetical protein AN2818.2 [Aspergillus nidulans FGSC A4] gi|259486257|tpe|CBF83952.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4] Length = 679 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 111/334 (33%), Gaps = 88/334 (26%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 + +F + G + L + +G++ R L P + FSP+ + + D Sbjct: 63 KGVFYMNRIAPGT--SELYISTANGSSERPLLP-NPIYEYHASFSPSGDWITFTGERSGD 119 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-AMDIYSVDLQSNAT 294 + + + SM + S +G A ++ +I+ +D+++ Sbjct: 120 GNSDIYRVRPDGSDLQLLLSTPSMEDSVVLSPDGTLAAYVSTENGYRANIWILDIETGKR 179 Query: 295 ERLTNTLFINIS-----------ASYSPDSSQIVFESDR---------------EGKEQ- 327 +T+T S S+SPD I F SDR G E Sbjct: 180 WNVTDTPLSRRSVNETLMNGYFRPSWSPDGRWIAFSSDRNTEWRGHGDDTYLGISGWEHT 239 Query: 328 ----LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE-------------- 369 +Y ++++GS ++++ S P WSP G I + + + E Sbjct: 240 QELSIYAVRADGSGFRQLATKPGYSLGSPSWSPDGKRIVYYEMTREATWGAHRPESIDST 299 Query: 370 --------------------------------KFAIGVMKKDGSQERLLVEDS-----NL 392 IG K S+E + D + Sbjct: 300 SSIIVSVDFKTGKDRRVEVDVDGVKAFPQYLSNNTIGYHLKGTSKEGIYTTDGVYLNKTI 359 Query: 393 QAPTWSPSGRSLIF--SRKKDGDTGSKLYSIDLN 424 ++P WSP+G+ +++ + +LYS + + Sbjct: 360 RSPAWSPNGQYIVYEKTSWDIRPMAKELYSWNED 393 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 106/327 (32%), Gaps = 94/327 (28%) Query: 211 DQILFEPRFSPNQQKVAY--------------------ATYDDEDILRVYLMDTRIDRAP 250 ++ + P +SPN Q + Y Y D+ RI Sbjct: 356 NKTIRSPAWSPNGQYIVYEKTSWDIRPMAKELYSWNEDWDYRFTDVFPQISNQNRIAMTE 415 Query: 251 KRIGNFR--------------------------------SMILAPRFSSNGKRALI---- 274 K++GN + P +S +G+ + Sbjct: 416 KQLGNSSIITVKPDASDERMAYDNAKSDLVSSSLVSQGLAGAFQPSWSPDGEWLVFGEGA 475 Query: 275 --SVQKDEAMDIYSVDLQSNATERLT--NTLFINIS------ASYSPDSSQIVF------ 318 + + + E LT NT N S SYS D S+IVF Sbjct: 476 WFQSRASTGGWLVRATANGSEYEVLTASNTSIANTSIMNSGFPSYSHDGSKIVFRVWGAN 535 Query: 319 -ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG--DLIAFTKFSG-EKFAIG 374 + G+ L VM N + ++ + P +SP G + I FT+ +G + + Sbjct: 536 STNGDTGQLGLRVMDLNTRNITALTNE---WDNLPFFSPAGFEERIVFTRKTGVYNYDVC 592 Query: 375 VMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDG------------DTGSKLYSI 421 +K DG+ +L N WS GR +++S G ++ + Sbjct: 593 TIKPDGTDLEVLTSSGGNDAHAVWSYDGR-IMYSTGMFGFQYECALYDDTFQPYGQVMIM 651 Query: 422 DLNGRNETLINTPAY-ASDPQWVGFMD 447 D +G N+ ++ + S P V + D Sbjct: 652 DADGGNKQVLTDSIWEDSMPLLVPYSD 678 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 114/353 (32%), Gaps = 95/353 (26%) Query: 165 SITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 T +G + ++ S + S+ + DG+ R L L P +SP+ + Sbjct: 218 RNTEWRGHGDD--TYLGISGWEHTQELSIYAVRADGSGFRQLATKPGYSLGSPSWSPDGK 275 Query: 225 KVAY--------------------------ATYDDEDILRVYLMDTRIDRAPKRIGN--- 255 ++ Y + RV + + P+ + N Sbjct: 276 RIVYYEMTREATWGAHRPESIDSTSSIIVSVDFKTGKDRRVEVDVDGVKAFPQYLSNNTI 335 Query: 256 -------------------FRSMILAPRFSSNGKRALISVQ----KDEAMDIYSVDLQSN 292 I +P +S NG+ + + A ++YS + Sbjct: 336 GYHLKGTSKEGIYTTDGVYLNKTIRSPAWSPNGQYIVYEKTSWDIRPMAKELYSWNEDW- 394 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-------- 344 + F ++ S + ++I + G + ++ + SD++ + Sbjct: 395 ------DYRFTDVFPQIS-NQNRIAMTEKQLGNSSIITVKPDASDERMAYDNAKSDLVSS 447 Query: 345 -----KEASYFDPVWSPQGDLIAFT------KFSGEKFAIGVMKKDGSQERLLVEDS--- 390 A F P WSP G+ + F + + +GS+ +L + Sbjct: 448 SLVSQGLAGAFQPSWSPDGEWLVFGEGAWFQSRASTGGWLVRATANGSEYEVLTASNTSI 507 Query: 391 ------NLQAPTWSPSGRSLIF----SRKKDGDTG-SKLYSIDLNGRNETLIN 432 N P++S G ++F + +GDTG L +DLN RN T + Sbjct: 508 ANTSIMNSGFPSYSHDGSKIVFRVWGANSTNGDTGQLGLRVMDLNTRNITALT 560 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 25/155 (16%) Query: 314 SQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT--KFSGE 369 + VF +R G +LY+ +NGS ++ + + Y +SP GD I FT + Sbjct: 62 KKGVFYMNRIAPGTSELYISTANGSSERPLLPNPIYEYHA-SFSPSGDWITFTGERSGDG 120 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRN 427 I ++ DGS +LL+ +++ + SP G + ++G + ++ +D+ G+ Sbjct: 121 NSDIYRVRPDGSDLQLLLSTPSMEDSVVLSPDGTLAAYVSTENG-YRANIWILDIETGKR 179 Query: 428 ETLINTP-----------------AYASDPQWVGF 445 + +TP +++ D +W+ F Sbjct: 180 WNVTDTPLSRRSVNETLMNGYFRPSWSPDGRWIAF 214 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 22/155 (14%) Query: 175 SRILFVS---ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ--QKVAYA 229 S+I+F S + L VMD N R +T ++ P FSP +++ + Sbjct: 525 SKIVFRVWGANSTNGDTGQLGLRVMDL---NTRNITALTNEWDNLPFFSPAGFEERIVFT 581 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR-------------ALISV 276 V + + + + +S +G+ AL Sbjct: 582 RKTGVYNYDVCTIKPD-GTDLEVLTSSGGNDAHAVWSYDGRIMYSTGMFGFQYECALYDD 640 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 + +D + LT++++ + P Sbjct: 641 TFQPYGQVMIMDADGGNKQVLTDSIWEDSMPLLVP 675 >gi|157960820|ref|YP_001500854.1| winged helix family two component response transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845820|gb|ABV86319.1| putative two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 715 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI-DRAPKRIGNFRSMILAPRFSSNGK 270 P SP+ + + Y + +YL D + PKR+ + +S + +S +G Sbjct: 185 GSELYPAISPDGRWLVYGSRGSNRYASLYLKDLQNPAETPKRLTSTKSAEIRAVWSPDGS 244 Query: 271 RALISVQKDEAMDIYS--VDLQSNATERL----TNTLFINISASYSPDSSQIVFESDRE- 323 + Y ++L SN +L T + I+ +PD S++V+ D + Sbjct: 245 ALYYGSEYRSEDKCYLTKLNLDSNEALKLGECYTYSSAID----IAPDGSRLVYIWDADE 300 Query: 324 ----GKEQLYVMQSNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVM 376 G +L + + KR+ ++D D +SP G +A + G I ++ Sbjct: 301 GFGSGLYEL-TLNRDEQPPKRLSCTEDCSYRDRDAAFSPDGSWLAVARRFGNISEDIFLL 359 Query: 377 KKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + +E+ L +++ +W LIFS + G + ID Sbjct: 360 HTETGEEQRLTFGLEDIRGLSWHQDSERLIFSTENSGVRNGYIVGID 406 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 51/276 (18%) Query: 219 FSPNQQKVAYATYDDEDILR--VYLMDTRIDRAPKRIG---NFRSMILAPRFSSNGKRAL 273 +P+ ++ Y DE L R ++ PKR+ + FS +G Sbjct: 285 IAPDGSRLVYIWDADEGFGSGLYELTLNRDEQPPKRLSCTEDCSYRDRDAAFSPDGSWLA 344 Query: 274 ISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 ++ + + DI+ + ++ +RLT L S+ DS +++F ++ G Y++ Sbjct: 345 VARRFGNISEDIFLLHTETGEEQRLTFGLEDIRGLSWHQDSERLIFSTENSGVRNGYIVG 404 Query: 333 SNGSDQKRISQDK-------------------------------------------EASY 349 + + + + E SY Sbjct: 405 IDDKQIQSLDVEGMSYPRSIPDSDDVVYSNYMRDYQVASFALEQSIPTATFPLLQVEYSY 464 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSR 408 +P +S I + I DG+Q R + + P+WS G + F Sbjct: 465 RNPDYSSVTQRIVYVSNETGFNEIWSSDADGNQRRQHTDLKRRVAYPSWSHDGTKVAFLA 524 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPA-YASDPQWV 443 D + G+K++ +D+ N +++ TP + P W Sbjct: 525 PDDKNEGNKIHVLDMQTSNISILATPYLDHNRPSWG 560 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 20/230 (8%) Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDI 284 VA+A + +D +R Y+ +++ + L P S +G+ + + + + Sbjct: 159 VAWAYHLYQDSIR-YVPTVKLN-----LTTAAGSELYPAISPDGRWLVYGSRGSNRYASL 212 Query: 285 YSVDLQSNA--TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 Y DLQ+ A +RLT+T I A +SPD S + + S+ +++ Y+ + N + + Sbjct: 213 YLKDLQNPAETPKRLTSTKSAEIRAVWSPDGSALYYGSEYRSEDKCYLTKLNLDSNEALK 272 Query: 343 QDKEASYFDP-VWSPQGDLIAFTKFSGEKFAIGVM----KKDGSQERLL--VED--SNLQ 393 + +Y +P G + + + E F G+ +D + L ED + Sbjct: 273 LGECYTYSSAIDIAPDGSRLVYIWDADEGFGSGLYELTLNRDEQPPKRLSCTEDCSYRDR 332 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSI-DLNGRNETLINTPAYASDPQW 442 +SP G L +R + G+ ++ + G + L W Sbjct: 333 DAAFSPDGSWLAVAR-RFGNISEDIFLLHTETGEEQRLTFGLEDIRGLSW 381 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 95/288 (32%), Gaps = 63/288 (21%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 +SP+ + Y + + ++G + A + +G R + Sbjct: 239 WSPDGSALYYGSEYRSEDKCYLTKLNLDSNEALKLGECYTYSSAIDIAPDGSRLVYIWDA 298 Query: 279 DEAM----DIYSVDLQSNATERLTNT---LFINISASYSPDSSQIVFESDREGK--EQLY 329 DE +++ +RL+ T + + A++SPD S + + R G E ++ Sbjct: 299 DEGFGSGLYELTLNRDEQPPKRLSCTEDCSYRDRDAAFSPDGSWLA-VARRFGNISEDIF 357 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 ++ + +++R++ E W + + F+ + ++ D Q + L + Sbjct: 358 LLHTETGEEQRLTFGLE-DIRGLSWHQDSERLIFSTENSGVRNGYIVGIDDKQIQSL-DV 415 Query: 390 SNLQAPTWSPSGRSLIFS-----------------------------RKKDGDTGS---- 416 + P P +++S ++ D S Sbjct: 416 EGMSYPRSIPDSDDVVYSNYMRDYQVASFALEQSIPTATFPLLQVEYSYRNPDYSSVTQR 475 Query: 417 -----------KLYSIDLNGRN-------ETLINTPAYASDPQWVGFM 446 +++S D +G + + P+++ D V F+ Sbjct: 476 IVYVSNETGFNEIWSSDADGNQRRQHTDLKRRVAYPSWSHDGTKVAFL 523 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 16/203 (7%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E+ F++ V + GI + +D +G + PR P+ V Sbjct: 385 SERLIFSTENSGVRNGYIVGIDDKQIQSLDVEG-------------MSYPRSIPDSDDVV 431 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y+ Y + + + ++ I A + P +SS +R + + +I+S Sbjct: 432 YSNYMRDYQVASFALEQSIPTATFPLLQVEYSYRNPDYSSVTQRIVYVSNETGFNEIWSS 491 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDK 345 D N + T+ S+S D +++ F + D+ +++V+ S+ I Sbjct: 492 DADGNQRRQHTDLKRRVAYPSWSHDGTKVAFLAPDDKNEGNKIHVLDMQTSNIS-ILATP 550 Query: 346 EASYFDPVWSPQGDLIAFTKFSG 368 + P W +++ + G Sbjct: 551 YLDHNRPSWGWNDEMVLASSKDG 573 >gi|78212200|ref|YP_380979.1| dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like [Synechococcus sp. CC9605] gi|78196659|gb|ABB34424.1| Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like [Synechococcus sp. CC9605] Length = 648 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 105/290 (36%), Gaps = 38/290 (13%) Query: 153 KIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-----NSLCVMDRDGANIRYLT 207 +++H IS + T D + + + E + L + DG Sbjct: 14 QLSHWISSPPARPPTQISPDGGTVVFVLEEPGPQPKGEPWRGDQDLWRVPADGNAAPQRW 73 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDD-----EDILRVYLMDTRIDRAPKRIGNFRSMILA 262 S + + PR+SP+ ++A+ + E ++YL++ D+ ++ I Sbjct: 74 ISSPERDWSPRWSPDGTRLAFLSQRKTIGSTEPRTQIYLVNADGDQL-HQLTQLSGNISQ 132 Query: 263 PRFSSNGKRALISVQKDEA---------------MDIYSVDLQSNATERLTNTLFINISA 307 R+S +G+ +D + + + ++ + I Sbjct: 133 FRWSPDGRSVAFLSTQDPTVEDGDPQLSNQPRPLTKLNRISISGEELRVISPSGLNVIDF 192 Query: 308 SYSPDSSQIVF-------ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +SPD ++I D QL V+ S+ + +R ++ +WSP Sbjct: 193 DWSPDGTRIAALISPTATNEDVVNTRQLVVLDSDTGEVERRFSNRIGWNSPLLWSPDSKF 252 Query: 361 I---AFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 I ++ G+ ++ ++ D Q RLL+E + P WS R L+ Sbjct: 253 IHVDIWSPSPGDAWSPALISTDNGQSRLLLEGARATFSDPRWSADSRFLM 302 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 103/296 (34%), Gaps = 47/296 (15%) Query: 194 CVMDRDGANIRYLTPSRDQILFEP--RFSPNQQKVAYATYDDEDILR---------VYLM 242 ++ R + L+ P + SP+ V + + + ++ + Sbjct: 3 WLVHRQHQSDVQLSHWISSPPARPPTQISPDGGTVVFVLEEPGPQPKGEPWRGDQDLWRV 62 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATER 296 + AP+R + +PR+S +G R Q+ + IY V+ + + Sbjct: 63 PADGNAAPQRWISSPERDWSPRWSPDGTRLAFLSQRKTIGSTEPRTQIYLVNADGDQLHQ 122 Query: 297 LTNTLFINISASYSPDSSQIVFESDR-----EGKEQ----------LYVMQSNGSDQKRI 341 LT +SPD + F S + +G Q L + +G + + I Sbjct: 123 LTQLSGNISQFRWSPDGRSVAFLSTQDPTVEDGDPQLSNQPRPLTKLNRISISGEELRVI 182 Query: 342 SQDKEASYFDPVWSPQGDLI-AFTKFSGEK------FAIGVMKKDGSQ-ERLLVEDSNLQ 393 S + D WSP G I A + + V+ D + ER Sbjct: 183 SPSGL-NVIDFDWSPDGTRIAALISPTATNEDVVNTRQLVVLDSDTGEVERRFSNRIGWN 241 Query: 394 AP-TWSPSGRSL---IFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYASDPQWVG 444 +P WSP + + I+S L S D NG++ L+ A SDP+W Sbjct: 242 SPLLWSPDSKFIHVDIWSPSPGDAWSPALISTD-NGQSRLLLEGARATFSDPRWSA 296 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 82/242 (33%), Gaps = 27/242 (11%) Query: 175 SRILFVSES--VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-- 230 +R+ F+S+ + S + + +++ DG + LT I R+SP+ + VA+ + Sbjct: 90 TRLAFLSQRKTIGSTEPRTQIYLVNADGDQLHQLTQLSGNISQF-RWSPDGRSVAFLSTQ 148 Query: 231 -----------YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 + L + + I ++ +S +G R + Sbjct: 149 DPTVEDGDPQLSNQPRPLTKLNRISISGEELRVISPSGLNVIDFDWSPDGTRIAALISPT 208 Query: 280 -------EAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQI---VFESDREGKEQL 328 + +D + R +N + N +SPDS I ++ Sbjct: 209 ATNEDVVNTRQLVVLDSDTGEVERRFSNRIGWNSPLLWSPDSKFIHVDIWSPSPGDAWSP 268 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 ++ ++ + + + A++ DP WS + + + + ++ + L Sbjct: 269 ALISTDNGQSRLLLEGARATFSDPRWSADSRFLMGQLLKENQTTLVKIDRETGLRQNLSP 328 Query: 389 DS 390 Sbjct: 329 SG 330 >gi|20091363|ref|NP_617438.1| hypothetical protein MA2535 [Methanosarcina acetivorans C2A] gi|19916497|gb|AAM05918.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 560 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 74/179 (41%), Gaps = 2/179 (1%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L + + + + + + + +K+ Y E +++++D R R Sbjct: 162 LYLANLENGTVFPVADDPQISEYWGAWCRLGKKITYTQKAAEIPSQLWIVD-RDGSNKFR 220 Query: 253 IGNFRSMILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +G ++ + G R + S ++ D++ +D RLTNT + S+SP Sbjct: 221 LGTSENVGTGKDWCPLGLRVIYSAKDSEDNSDLWVIDFYGTNQVRLTNTSCNEWNPSFSP 280 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + I + SD G +++ G+ + R++ + + P WSP G I F ++ E Sbjct: 281 NGKWIAYVSDEGGSPDIWLRDIEGNYRSRVTNNTGSPDSVPKWSPDGSKIVFAGYNPEN 339 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 113/297 (38%), Gaps = 19/297 (6%) Query: 159 SDDIYQSIT--------GEKGDFNSRILFVSESVVSGIIKN-SLCVMDRDGANIRYLTPS 209 +D++ + IT + + ++ +V +N M DG++I Sbjct: 74 ADELVEEITFLTDSPESESSPVWTADGQYIMYTVERNDSENLESYRMKADGSSIERTGIG 133 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + + N ++ + + +YL + + + + G Sbjct: 134 EGNLAGFSDINLNGTELIFTKSINSQP-GLYLANLENGTVFPVADDPQISEYWGAWCRLG 192 Query: 270 KRALISVQKDEAM-DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES-DREGKEQ 327 K+ + + E ++ VD + RL + + + P ++++ + D E Sbjct: 193 KKITYTQKAAEIPSQLWIVDRDGSNKFRLGTSENVGTGKDWCPLGLRVIYSAKDSEDNSD 252 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV 387 L+V+ G++Q R++ + + ++P +SP G IA+ G I + +G+ + Sbjct: 253 LWVIDFYGTNQVRLT-NTSCNEWNPSFSPNGKWIAYVSDEGGSPDIWLRDIEGNYRSRVT 311 Query: 388 --EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN---GRNETLINTPAYASD 439 S P WSP G ++F+ + + S++ S + + G N + A SD Sbjct: 312 NNTGSPDSVPKWSPDGSKIVFAGY-NPENNSEINSTNTDMINGSNINGSDIDANGSD 367 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 92/247 (37%), Gaps = 10/247 (4%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 + P ++ + Q + Y + + L Y M + ++ Sbjct: 82 TFLTDSPESESSPVWTADGQYIMYTVERNDSENLESYRMKADGSSIERTGIGEGNLAGFS 141 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFE-SD 321 + NG + + + +Y +L++ + + I ++ +I + Sbjct: 142 DINLNGTELIFTKSINSQPGLYLANLENGTVFPVADDPQISEYWGAWCRLGKKITYTQKA 201 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-KFSGEKFAIGVMKKDG 380 E QL+++ +GS++ R+ + W P G + ++ K S + + V+ G Sbjct: 202 AEIPSQLWIVDRDGSNKFRLGTSENVG-TGKDWCPLGLRVIYSAKDSEDNSDLWVIDFYG 260 Query: 381 SQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 + + L S N P++SP+G+ + + + G ++ D+ G + + + D Sbjct: 261 TNQVRLTNTSCNEWNPSFSPNGKWIAYVSDEGGS--PDIWLRDIEGNYRSRVTNNTGSPD 318 Query: 440 --PQWVG 444 P+W Sbjct: 319 SVPKWSP 325 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 6/171 (3%) Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL--YVMQSNGSD 337 ++ +I S D LT++ S ++ D I++ +R E L Y M+++GS Sbjct: 67 DSGEIISADELVEEITFLTDSPESESSPVWTADGQYIMYTVERNDSENLESYRMKADGSS 126 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP-- 395 +R + + G + FTK + + + + + +D + Sbjct: 127 IERTGIGEGNLAGFSDINLNGTELIFTKSINSQPGLYLANLENGTVFPVADDPQISEYWG 186 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ-WVGF 445 W G+ + ++ +K + S+L+ +D +G N+ + T + W Sbjct: 187 AWCRLGKKITYT-QKAAEIPSQLWIVDRDGSNKFRLGTSENVGTGKDWCPL 236 >gi|262198787|ref|YP_003269996.1| hypothetical protein Hoch_5623 [Haliangium ochraceum DSM 14365] gi|262082134|gb|ACY18103.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365] Length = 956 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 9/214 (4%) Query: 174 NSRILFVSESVVSGIIKNS-LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + ++F + G + D + +T +P SP+++ VA+ Sbjct: 350 DGSLVFEQTTSYQGNYSFQDIYRWDVRETAPQPITHG--LRARQPAVSPDERTVAFV-LS 406 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR---SMILAPRFSSNGKRALISVQKDEAM-DIYSVD 288 E R+ LM + + + + P +S +G+R S + DI+ D Sbjct: 407 GESRSRLALMPLEPYAEHRVVWSGEHRFDQVATPAWSPDGQRIAFSAWESGGYRDIWIFD 466 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + S RLT +++S +SPD + + + SDR G +Y + +++ + Sbjct: 467 VASERATRLTRDRALDVSPVFSPDGAYLFYASDRSGIFNIYAHEWATGALYQVTNVIGGA 526 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 SP G + + F + + + + S+ Sbjct: 527 MAAE-ISPDGTRLVYQGFGVGGYDLYELPLERSR 559 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 12/207 (5%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI- 274 PRFS + + + + D + + + +G + Sbjct: 298 NPRFSHDGRYLYWHQSDGLRPGHIRRVAVGEHVGEAEDVTDADRLGDFVVLDDG-SLVFE 356 Query: 275 -SVQKDEAM---DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + DIY D++ A + +T+ L + SPD + F E + +L + Sbjct: 357 QTTSYQGNYSFQDIYRWDVRETAPQPITHGL-RARQPAVSPDERTVAFVLSGESRSRLAL 415 Query: 331 MQSNGSDQKRISQDKEASY---FDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGSQERLL 386 M + R+ E + P WSP G IAF+ + + I + + L Sbjct: 416 MPLEPYAEHRVVWSGEHRFDQVATPAWSPDGQRIAFSAWESGGYRDIWIFDVASERATRL 475 Query: 387 VED-SNLQAPTWSPSGRSLIFSRKKDG 412 D + +P +SP G L ++ + G Sbjct: 476 TRDRALDVSPVFSPDGAYLFYASDRSG 502 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 74/201 (36%), Gaps = 11/201 (5%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + + +Y D R + AP+ I P S + + + + + + Sbjct: 360 SYQGNYSFQDIYRWDVR-ETAPQPIT-HGLRARQPAVSPDERTVAFVLSGESRSRLALMP 417 Query: 289 LQSNATERL---TNTLFINI-SASYSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQ 343 L+ A R+ F + + ++SPD +I F + G + +++ R+++ Sbjct: 418 LEPYAEHRVVWSGEHRFDQVATPAWSPDGQRIAFSAWESGGYRDIWIFDVASERATRLTR 477 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGR 402 D+ A PV+SP G + + F I + + A SP G Sbjct: 478 DR-ALDVSPVFSPDGAYLFYASDRSGIFNIYAHEWATGALYQVTNVIGGAMAAEISPDGT 536 Query: 403 SLIFSRKKDGDTGSKLYSIDL 423 L++ + G G LY + L Sbjct: 537 RLVY--QGFGVGGYDLYELPL 555 >gi|84497170|ref|ZP_00995992.1| WD40-like Beta Propeller protein [Janibacter sp. HTCC2649] gi|84382058|gb|EAP97940.1| WD40-like Beta Propeller protein [Janibacter sp. HTCC2649] Length = 352 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 27/203 (13%) Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----- 322 NG+ + + + ++ + A ++T+ F N A++SPD +++ F+S R Sbjct: 40 NGRISFMRMDDTGHWQTWTANPDLTAQHKITDGDFDNSWAAWSPDGTRLAFDSSRLAPEA 99 Query: 323 -EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE---KFAIGVMKK 378 ++++ M +G+D +++ P WSP G IAFT G+ I + Sbjct: 100 NGDLKEIFTMAPDGTDVHQVTNLGF-FAGQPTWSPDGRWIAFTTDGGDYPTSQGIYAIHP 158 Query: 379 DGSQERLLVE------DSNLQAPTWSPSGRSLIFSRKKDGDT----------GSKLYSID 422 DG+ +V L AP +SP G L ++ + G S L+++ Sbjct: 159 DGTGLHRIVALPAGPRSVWLDAPRFSPDGSRLAYTFFQGGKPTRSPWSWKGETSALWTVG 218 Query: 423 LNGRNETLINTPAY-ASDPQWVG 444 ++G N + P D W Sbjct: 219 VDGANARQVVAPGQKVGDADWSP 241 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 47/301 (15%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 N RI F+ + D +T D +SP+ ++A+ + Sbjct: 40 NGRISFMRM---DDTGHWQTWTANPDLTAQHKITDG-DFDNSWAAWSPDGTRLAFDSSRL 95 Query: 234 EDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD---IYS 286 L + ++ N P +S +G+ + + IY+ Sbjct: 96 APEANGDLKEIFTMAPDGTDVHQVTNLGFFAGQPTWSPDGRWIAFTTDGGDYPTSQGIYA 155 Query: 287 VDLQSNATERLTNTLFINIS-----ASYSPDSSQIVFESDREGKEQ------------LY 329 + R+ S +SPD S++ + + GK L+ Sbjct: 156 IHPDGTGLHRIVALPAGPRSVWLDAPRFSPDGSRLAYTFFQGGKPTRSPWSWKGETSALW 215 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLL 386 + +G++ +++ + D WSP G + F + G + + G L Sbjct: 216 TVGVDGANARQVVAPGQ-KVGDADWSPDGRHLVFEQMGNDPGSLSRVLRVPATGGGITAL 274 Query: 387 VEDSNLQA-------------PTWSPSGRSLIFSRKKDGDTGS--KLYSIDLNGRNETLI 431 +D+ L+ P +SP G +++F + T L +++ +G N + Sbjct: 275 SQDTGLRGGRSDNWSFQASFDPVYSPDGTTILFPHDEYSPTFGCTSLQAMNADGTNPHWV 334 Query: 432 N 432 N Sbjct: 335 N 335 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 13/99 (13%) Query: 360 LIAFTKFSG-EKFAIGVMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKK----DGD 413 I+F + + D +Q ++ D + WSP G L F + Sbjct: 42 RISFMRMDDTGHWQTWTANPDLTAQHKITDGDFDNSWAAWSPDGTRLAFDSSRLAPEANG 101 Query: 414 TGSKLYSIDLNGRNETLINT-------PAYASDPQWVGF 445 +++++ +G + + P ++ D +W+ F Sbjct: 102 DLKEIFTMAPDGTDVHQVTNLGFFAGQPTWSPDGRWIAF 140 >gi|218129210|ref|ZP_03458014.1| hypothetical protein BACEGG_00785 [Bacteroides eggerthii DSM 20697] gi|317475185|ref|ZP_07934452.1| hypothetical protein HMPREF1016_01431 [Bacteroides eggerthii 1_2_48FAA] gi|217988588|gb|EEC54908.1| hypothetical protein BACEGG_00785 [Bacteroides eggerthii DSM 20697] gi|316908638|gb|EFV30325.1| hypothetical protein HMPREF1016_01431 [Bacteroides eggerthii 1_2_48FAA] Length = 1089 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 36/216 (16%) Query: 254 GNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 S P + S +G + D IY V + A +LT + Sbjct: 13 TTLTSYAATPLWMRDIQISPDGTEIAFCYKGD----IYKVPAKGGAATQLTTQDSYESNP 68 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +SPD QI F SDR G ++VM +NG +R++ + ++P G I F+ Sbjct: 69 IWSPDGRQIAFASDRYGNFDVFVMPANGGAAQRLTTNSTGE-TPSAFTPDGKYILFSAAI 127 Query: 368 GEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG---- 412 + + + G + ++ +A + SG L F + + G Sbjct: 128 QDPVESALFPRSAMTELYKVPVTGGRTEQVLGTP-AEAICFDKSGN-LFFYQDQKGFEDQ 185 Query: 413 -------DTGSKLYSIDL-NGRNETLINTPAYASDP 440 +++ D G++ L +P Sbjct: 186 WRKHHTSSITRDIWTYDTRTGKHSNLTRHAGEDRNP 221 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 35/249 (14%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + V G + + + + SP+ ++A+ DI +V A Sbjct: 2 KKIFVYLTLGFTTLTSYAATPLWMRDIQISPDGTEIAFCY--KGDIYKV----PAKGGAA 55 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 ++ S P +S +G++ + + D++ + A +RLT ++++ Sbjct: 56 TQLTTQDSYESNPIWSPDGRQIAFASDRYGNFDVFVMPANGGAAQRLTTNSTGETPSAFT 115 Query: 311 PDSSQIVFESD-----------REGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQG 358 PD I+F + R +LY + G +++ EA FD G Sbjct: 116 PDGKYILFSAAIQDPVESALFPRSAMTELYKVPVTGGRTEQVLGTPAEAICFDKS----G 171 Query: 359 DLIAF------------TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 +L + S I + L + P +P G++L Sbjct: 172 NLFFYQDQKGFEDQWRKHHTSSITRDIWTYDTRTGKHSNLTRHAGEDRNPILAPDGQTLY 231 Query: 406 FSRKKDGDT 414 F +++G + Sbjct: 232 FLSERNGGS 240 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 110/330 (33%), Gaps = 40/330 (12%) Query: 131 WDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK 190 +D + K R ++ G + F S Sbjct: 201 YDTRTGKH---SNLTRHAGEDRNPILAPDGQTLYFLSERNGGSFNVYAFPLAQPESVK-- 255 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 V D +R+L+ S + L + + + Y +V + TR D + Sbjct: 256 ---AVTDFKTHPVRFLSMSNNGTLC---YGYDGE--IYTQQGGSAPQKVQIEITRDDPSQ 307 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 N+ + + S +GK+ ++ +++ T+++T T S++ Sbjct: 308 VEYLNYTNGATSATVSPDGKQIGFIIRG----EVFVTSADYATTKQITRTPANESGLSFA 363 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSD-----------QKRISQDKEASYFDPVWSPQGD 359 PD+ + + S+R G QLY+ + + ++ + P +SP G Sbjct: 364 PDNRTLAYASERNGNWQLYLAKIARKEDPNFPNATIIKEEVLLPSTTVERACPQFSPDGK 423 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ------APTWSPSGRS--LIFSRKKD 411 +AF + ++ + V+ + + R + + S + WSP + L F K Sbjct: 424 ELAFIE---DRIRLMVLNLETKKVRQITDGSTWYSTNGEFSYAWSPDSKWFTLEFIGNKH 480 Query: 412 GDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 D S + + G + + T + Sbjct: 481 -DPYSDIGLVSAQGNSPIINLTNSGYMSGS 509 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 85/255 (33%), Gaps = 32/255 (12%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 ++ S K + + D + + YL + SP+ +++ + + Sbjct: 284 IYTQQGGSAPQKVQIEITRDDPSQVEYLNYTNGATSA--TVSPDGKQIGFIIRGE----- 336 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 + + K+I + F+ + + + +++ +Y + Sbjct: 337 -VFVTSADYATTKQITRTPANESGLSFAPDNRTLAYASERNGNWQLYLAKIARKEDPNFP 395 Query: 299 NTLFINIS------------ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 N I +SPD ++ F DR +L V+ ++I+ Sbjct: 396 NATIIKEEVLLPSTTVERACPQFSPDGKELAFIEDRI---RLMVLNLETKKVRQITDGST 452 Query: 347 ASY----FDPVWSPQGDL--IAFTKFSGEKF-AIGVMKKDGSQERL-LVEDSNLQ-APTW 397 F WSP + F + + IG++ G+ + L + +P + Sbjct: 453 WYSTNGEFSYAWSPDSKWFTLEFIGNKHDPYSDIGLVSAQGNSPIINLTNSGYMSGSPRF 512 Query: 398 SPSGRSLIFSRKKDG 412 + G +++F ++ G Sbjct: 513 ALDGNAILFKTERYG 527 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 57/368 (15%), Positives = 129/368 (35%), Gaps = 57/368 (15%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGD 172 V +GK + ++ V K+ +PA+ ++ + + G+ Sbjct: 320 ATVSPDGKQIGFIIRGEVF-VTSADYATTKQITRTPANESGLSFAPDNRTLAYASERNGN 378 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 + + ++ ++ L PS P+FSP+ +++A+ Sbjct: 379 WQLYLAKIARKEDPNFPNATII-------KEEVLLPSTTVERACPQFSPDGKELAFI--- 428 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSM-----ILAPRFSSNGKR--ALISVQK-DEAMDI 284 ED +R+ +++ + ++I + + + +S + K K D DI Sbjct: 429 -EDRIRLMVLNLET-KKVRQITDGSTWYSTNGEFSYAWSPDSKWFTLEFIGNKHDPYSDI 486 Query: 285 YSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQ 332 V Q N+ LTN+ +++ S ++ D + I+F+++R G L + Sbjct: 487 GLVSAQGNSPIINLTNSGYMSGSPRFALDGNAILFKTERYGMRAHASWGSQDDAMLIFLN 546 Query: 333 SNGSDQKRISQDKE----------------ASYFDPVWSP---QGDLIAFTKFSGEKFAI 373 + D+ +S++ + D S D + + Sbjct: 547 QDAYDKYCLSKEDYELRKELEAEQKKAQGKDAGKDKKKSQKDTGKDKADDDSPQVKDIIV 606 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN- 432 + + RL S++ + S G +L + + G L+ +DL + L++ Sbjct: 607 ELKNLEDRIVRLTPNSSDMGSVIISKDGETLYYLA--AFEDGYDLWKMDLRKKETRLLHK 664 Query: 433 -TPAYASD 439 +AS Sbjct: 665 MDAGWASM 672 >gi|270294523|ref|ZP_06200725.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275990|gb|EFA21850.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1090 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + P + S +G + D IY V + +LT + Sbjct: 12 LTAIAGHAATPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQESYECT 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD QI F SDR G ++VM ++G +R++ ++P G I F+ Sbjct: 68 PIWSPDGKQIAFASDRYGNFDVFVMPADGGTAQRLTTHSTGE-IPSTFTPDGKYILFSAS 126 Query: 367 -----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 + + + G + ++ +A + +G+ ++ +K Sbjct: 127 IQDPASSALFPTSAMTELYKVPATGGRTEQVLGTP-AEAVCFDKAGQQFLYQDRKGFEDE 185 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G + L + +P Sbjct: 186 WRKHHTSSITRDIWLYDAKTGIHTNLTDRAGEDRNPVLSP 225 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 35/221 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQESYECTPIWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 D++ + +RLT I ++++PD I+F + + Sbjct: 84 YGNFDVFVMPADGGTAQRLTTHSTGEIPSTFTPDGKYILFSASIQDPASSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 LY + + G +++ EA FD G + S I Sbjct: 144 LYKVPATGGRTEQVLGTPAEAVCFDKA----GQQFLYQDRKGFEDEWRKHHTSSITRDIW 199 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 + L + + P SP GR++ F +++G + Sbjct: 200 LYDAKTGIHTNLTDRAGEDRNPVLSPDGRTVYFLSERNGGS 240 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 104/323 (32%), Gaps = 81/323 (25%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + I + + D I R P SP+ + V + + + VY Sbjct: 191 TSSITRDIWLYDAK-TGIHTNLTDRAGEDRNPVLSPDGRTVYFLSERNGGSFNVYAFPLA 249 Query: 246 IDRAPKRIGNFRSM---------------------------------------------- 259 R K I +F++ Sbjct: 250 QPREVKPITSFKTHPVRFLSMSDGGTLCYGYDGEIYTQQPDATPKKVAIEIVRDDQPQFA 309 Query: 260 -------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + S +GK+ +++ +++ T+++T+T S++PD Sbjct: 310 NLQSSDGATSAVVSPDGKQIAFTLRG----EVFVTSADYATTKQVTHTPAREAGLSFAPD 365 Query: 313 SSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + + + S+R G QLY+ + +++ + P +SP G + Sbjct: 366 NRTLAYASERGGNWQLYLAKITRKEDPNFPNATLIEEEVLLPSTTVERAYPQFSPDGKEL 425 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGD 413 AF + ++ + V+ + + R + + S + WSP G+ L F+ K D Sbjct: 426 AFIE---DRIRLMVLNLETKKVRQITDGSTWYSTGGGFDYAWSPDGKWFTLEFTGNKH-D 481 Query: 414 TGSKLYSIDLNGRNETLINTPAY 436 S + + G + + T + Sbjct: 482 PYSDIGLVSAEGGKDIINLTNSG 504 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 81/231 (35%), Gaps = 30/231 (12%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 ++ SP+ +++A+ + + + K++ + + Sbjct: 306 PQFANLQSSDGATSAVVSPDGKQIAFTLRGE------VFVTSADYATTKQVTHTPAREAG 359 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYS 310 F+ + + + ++ +Y + N I +S Sbjct: 360 LSFAPDNRTLAYASERGGNWQLYLAKITRKEDPNFPNATLIEEEVLLPSTTVERAYPQFS 419 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDL--IAFT 364 PD ++ F DR +L V+ ++I+ FD WSP G + FT Sbjct: 420 PDGKELAFIEDRI---RLMVLNLETKKVRQITDGSTWYSTGGGFDYAWSPDGKWFTLEFT 476 Query: 365 KFSGEKF-AIGVMKKDGSQERL-LVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 + + IG++ +G ++ + L + P ++ G +++F+ ++ G Sbjct: 477 GNKHDPYSDIGLVSAEGGKDIINLTNSGYMSGYPRFALDGNAILFTTERYG 527 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 48/357 (13%), Positives = 113/357 (31%), Gaps = 100/357 (28%) Query: 166 ITGEKGDFNSRILFVSESVVSGI------IKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 +T G + + + K + + G LT ++ P + Sbjct: 12 LTAIAGHAATPLWMRDVQISPDGTEIAFCYKGDIYKVPAKGGTATQLTT-QESYECTPIW 70 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++A+A+ + V++M +R+ + + F+ +GK L S Sbjct: 71 SPDGKQIAFASDRYGN-FDVFVMPAD-GGTAQRLTTHSTGEIPSTFTPDGKYILFSASIQ 128 Query: 280 E-----------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---- 324 + ++Y V TE++ T + + Q +++ DR+G Sbjct: 129 DPASSALFPTSAMTELYKVPATGGRTEQVLGTPAEAV--CFDKAGQQFLYQ-DRKGFEDE 185 Query: 325 ---------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFA-- 372 +++ + ++ D+ +PV SP G + F ++ +G F Sbjct: 186 WRKHHTSSITRDIWLYDAKTGIHTNLT-DRAGEDRNPVLSPDGRTVYFLSERNGGSFNVY 244 Query: 373 ---------------------------------------IGVMKKDGSQERLLVEDSNLQ 393 I + D + +++ +E Sbjct: 245 AFPLAQPREVKPITSFKTHPVRFLSMSDGGTLCYGYDGEIYTQQPDATPKKVAIEIVRDD 304 Query: 394 APTW--------------SPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPA 435 P + SP G+ + F+ + +++ + + + +TPA Sbjct: 305 QPQFANLQSSDGATSAVVSPDGKQIAFTLR------GEVFVTSADYATTKQVTHTPA 355 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 93/243 (38%), Gaps = 31/243 (12%) Query: 95 DSIPRFQDWNSL-GAQVLVTGRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 D P+F + S GA V V +GK + ++ V K+ +PA R Sbjct: 303 DDQPQFANLQSSDGATSAV---VSPDGKQIAFTLRGEVF-VTSADYATTKQVTHTPA--R 356 Query: 153 KIAHTISDD--IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 + + + D + G++ + ++ +L L PS Sbjct: 357 EAGLSFAPDNRTLAYASERGGNWQLYLAKITRKEDPNFPNATLI-------EEEVLLPST 409 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRF 265 P+FSP+ +++A+ ED +R+ +++ + ++I + + Sbjct: 410 TVERAYPQFSPDGKELAFI----EDRIRLMVLNLET-KKVRQITDGSTWYSTGGGFDYAW 464 Query: 266 SSNGKR--ALISVQK-DEAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESD 321 S +GK + K D DI V + LTN+ +++ ++ D + I+F ++ Sbjct: 465 SPDGKWFTLEFTGNKHDPYSDIGLVSAEGGKDIINLTNSGYMSGYPRFALDGNAILFTTE 524 Query: 322 REG 324 R G Sbjct: 525 RYG 527 >gi|88802849|ref|ZP_01118376.1| acylaminoacyl-peptidase [Polaribacter irgensii 23-P] gi|88781707|gb|EAR12885.1| acylaminoacyl-peptidase [Polaribacter irgensii 23-P] Length = 679 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 109/269 (40%), Gaps = 36/269 (13%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + +L +++ DG++ R LT SR+ + ++SP+ ++A+ + ++ VY+ + Sbjct: 60 KDTSRGNLWIINSDGSSNRKLT-SREVNESQAKWSPSGDRIAFVS-GTKEGSEVYMYWVQ 117 Query: 246 IDRAPKRIGNFRSMILAP---RFSSNGKRALISVQ-KDEAMDIYSVDLQSNATE-----R 296 +I + +AP +S +G + ++ ++ I + + R Sbjct: 118 TG----QIAKLSQLEMAPGNLSWSPDGTQIAFTMFVAKKSPVIVKMPAKPKGASWAKAAR 173 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 +T+ L D S + + G L+++ + G ++I+ D +SP Sbjct: 174 ITDRLKHEA------DGSGYM----QPGFTHLFILPAEGGTPRQITSDDYNHSGSLSFSP 223 Query: 357 QGDLIAFTKFSGEKFA-------IGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 G I F+ E + + + + +L AP SP+G+ + F Sbjct: 224 NGKEIYFSANRVEDWEYDFRNSEVYKVDINSRIITVLTSQNGPDYAPKVSPNGKLIAFLG 283 Query: 409 KKD---GDTGSKLYSIDLNGRNETLINTP 434 +D + LY ++L+G N +++ Sbjct: 284 FEDKVQAHQNTLLYIMNLDGSNRKVVSGN 312 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 69/297 (23%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP---RFSPNQQKVAYATY 231 RI FVS + G V + G + Q+ P +SP+ ++A+ + Sbjct: 97 DRIAFVSGT-KEGSEVYMYWV--QTGQIAKL-----SQLEMAPGNLSWSPDGTQIAFTMF 148 Query: 232 DDEDILRVYLMDTRI--------------------------------------DRAPKRI 253 + + M + P++I Sbjct: 149 VAKKSPVIVKMPAKPKGASWAKAARITDRLKHEADGSGYMQPGFTHLFILPAEGGTPRQI 208 Query: 254 GNFR-SMILAPRFSSNGKRALISVQKDE-------AMDIYSVDLQSNATERLTNTLFINI 305 + + + FS NGK S + E ++Y VD+ S LT+ + Sbjct: 209 TSDDYNHSGSLSFSPNGKEIYFSANRVEDWEYDFRNSEVYKVDINSRIITVLTSQNGPDY 268 Query: 306 SASYSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + SP+ I F + LY+M +GS++K +S + + S + W G Sbjct: 269 APKVSPNGKLIAFLGFEDKVQAHQNTLLYIMNLDGSNRKVVSGNFDNSISNISWDSSGKG 328 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTWS-----PSGRSLIFSRKK 410 + T + + +G +L + + + P S ++++++ + Sbjct: 329 LYCTYDEKGNSKVAHISTNGKLMKLADNLGGTTIGRPYASGSYTVADNGTIVYTQSR 385 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 69/416 (16%), Positives = 141/416 (33%), Gaps = 60/416 (14%) Query: 17 LCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVV------- 69 L + + I GF S + P+ + ++ S ++ S+++ Sbjct: 4 LLIFSLFILGFQNISAQEQ------KIAFQPLDVFSLEWASDPQISPDASQIIYRRNGFD 57 Query: 70 -SKDLQRSDVFNLISQDSFKQKITNPDSIPRFQD-WNSLGAQVLVTGRVIKEGKDRLRVE 127 KD R +I+ D + + Q W+ G + KEG E Sbjct: 58 IMKDTSR-GNLWIINSDGSSNRKLTSREVNESQAKWSPSG-DRIAFVSGTKEGS-----E 110 Query: 128 FRLWDVKDRKQIIGKKFFSSPASWR------KIAHTI-----SDDIYQSITGEKGDFNSR 176 ++ V+ + + +P + +IA T+ S I + KG ++ Sbjct: 111 VYMYWVQTGQIAKLSQLEMAPGNLSWSPDGTQIAFTMFVAKKSPVIVKMPAKPKGASWAK 170 Query: 177 ILFVSES-----VVSGIIK---NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 +++ SG ++ L ++ +G R +T FSPN +++ + Sbjct: 171 AARITDRLKHEADGSGYMQPGFTHLFILPAEGGTPRQITSDDYNHSGSLSFSPNGKEIYF 230 Query: 229 ATYDDEDILR------VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQ 277 + ED VY +D R + + AP+ S NGK VQ Sbjct: 231 SANRVEDWEYDFRNSEVYKVDIN-SRIITVLTSQNGPDYAPKVSPNGKLIAFLGFEDKVQ 289 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGS 336 + +Y ++L + + ++ +IS S+ + D +G ++ + +NG Sbjct: 290 AHQNTLLYIMNLDGSNRKVVSGNFDNSISNISWDSSGKGLYCTYDEKGNSKVAHISTNGK 349 Query: 337 DQKRISQDKEASYFDPVWS-----PQGDLIAFTKFSGE-KFAIGVMKKDGSQERLL 386 K + P S I +T+ E + V++ ++ Sbjct: 350 LMKLADNLGGTTIGRPYASGSYTVADNGTIVYTQSRPEYPAELAVIQNKKGPHQIT 405 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 12/154 (7%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNF 256 + I + S++ + P+ SPN + +A+ ++D+ +Y+M+ GNF Sbjct: 254 SRIITVLTSQNGPDYAPKVSPNGKLIAFLGFEDKVQAHQNTLLYIMNLDGSNRKVVSGNF 313 Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI------SASYS 310 + I + S+GK + + + + +L + L S SY+ Sbjct: 314 DNSISNISWDSSGKGLYCTYDEKGNSKVAHISTNGK-LMKLADNLGGTTIGRPYASGSYT 372 Query: 311 -PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 D+ IV+ R + N +I+ Sbjct: 373 VADNGTIVYTQSRPEYPAELAVIQNKKGPHQITH 406 >gi|159030449|emb|CAO91350.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 703 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 47/315 (14%), Positives = 102/315 (32%), Gaps = 46/315 (14%) Query: 115 RVIKEGKDRLRVE------FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 V+ R ++W+V +++ +++TG Sbjct: 425 SVVYSPDGRYLASGSSDNTIKIWEVATGREL------------------------RTLTG 460 Query: 169 EKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 S + + SG N++ + + I++ +SP+ + +A Sbjct: 461 HYSFVRSVVYSPDGRYLASGSSDNTIKIWEVATEKEFRKLTGHSNIVWSVVYSPDGRYLA 520 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 +YD + + + R + + ++ + +S +G+ S D + I+ V Sbjct: 521 SGSYDK----TIKIWEVATGRELRTLAVHTDLVSSVVYSPDGRYLA-SGSWDNTIKIWEV 575 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 LT S YSPD + S + + + + R Sbjct: 576 -ATGRELRTLTGHSDRVESVVYSPDGRYLASGS---WDNTIKIWEVATGRELRTLTGHSL 631 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIF 406 + +SP G +A + + I ++ G + R L + + +SP GR L Sbjct: 632 GVYSVTYSPDGRYLA-SGSDDKTIKIWEVET-GKELRTLTGHSRGVYSVAYSPDGRYLA- 688 Query: 407 SRKKDGDTGSKLYSI 421 D K++ + Sbjct: 689 --SGSLDKTIKIWRV 701 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 98/283 (34%), Gaps = 16/283 (5%) Query: 164 QSITGEKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 +++TG G S + + SG N++ + + + +SP+ Sbjct: 414 KTLTGHSGKVESVVYSPDGRYLASGSSDNTIKIWEVATGRELRTLTGHYSFVRSVVYSPD 473 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + +A + D+ + + + ++ +++ +++ + +S +G+ S D+ + Sbjct: 474 GRYLASGSSDN----TIKIWEVATEKEFRKLTGHSNIVWSVVYSPDGRYLA-SGSYDKTI 528 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 I+ V L + S YSPD + S + + + + R Sbjct: 529 KIWEV-ATGRELRTLAVHTDLVSSVVYSPDGRYLASGS---WDNTIKIWEVATGRELRTL 584 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSG 401 V+SP G +A + I + G + R L S + + T+SP G Sbjct: 585 TGHSDRVESVVYSPDGRYLASGSWDNT-IKIWEV-ATGRELRTLTGHSLGVYSVTYSPDG 642 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 R L D K++ ++ TL + Sbjct: 643 RYLASGSD---DKTIKIWEVETGKELRTLTGHSRGVYSVAYSP 682 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/198 (11%), Positives = 62/198 (31%), Gaps = 34/198 (17%) Query: 96 SIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVE------FRLWDVKDRKQIIGKKFFSSPA 149 + ++ +L + V+ R ++W+V +++ Sbjct: 532 EVATGRELRTLAVHTDLVSSVVYSPDGRYLASGSWDNTIKIWEVATGRELRTLT------ 585 Query: 150 SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 H SD + + G + SG N++ + + Sbjct: 586 -----GH--SDRVESVVYSPDG----------RYLASGSWDNTIKIWEVATGRELRTLTG 628 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 ++ +SP+ + +A + D + + + + + + + + +S +G Sbjct: 629 HSLGVYSVTYSPDGRYLASGSDDK----TIKIWEVETGKELRTLTGHSRGVYSVAYSPDG 684 Query: 270 KRALISVQKDEAMDIYSV 287 + S D+ + I+ V Sbjct: 685 RYLA-SGSLDKTIKIWRV 701 >gi|134084093|emb|CAK43122.1| unnamed protein product [Aspergillus niger] Length = 675 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 25/198 (12%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + L V + DG+N R L + + ++SP+ + + + + D Sbjct: 60 SELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTDL 119 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNT--------- 300 + I ++ A S NG + + +I+ +L + A +TN+ Sbjct: 120 QPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIWIQNLDTGALWNVTNSTEVAGDYTL 179 Query: 301 LFINISASYSPDSSQIVFESDREGKEQ---------------LYVMQSNGSDQKRISQDK 345 + ++SPD +VF SDR + +Y ++ +G+ +R++ Sbjct: 180 PDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQELSIYAIRPDGTGFRRVANRT 239 Query: 346 EASYFDPVWSPQGDLIAF 363 P +SP G+ I F Sbjct: 240 GYCQGSPKFSPDGNRIVF 257 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 74/201 (36%), Gaps = 28/201 (13%) Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 I +Y+ + +GN + ++S +G+ + + ++ D D+Y V Sbjct: 57 PGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNG 116 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKE---- 346 + + + + + + SP+ S + F K +++ + ++ E Sbjct: 117 TDLQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIWIQNLDTGALWNVTNSTEVAGD 176 Query: 347 ----ASYFDPVWSPQGDLIAFTKFSGEKFA---------------IGVMKKDGSQERLLV 387 +F P WSP G+ + FT + I ++ DG+ R + Sbjct: 177 YTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQELSIYAIRPDGTGFRRVA 236 Query: 388 EDSNLQ--APTWSPSGRSLIF 406 + +P +SP G ++F Sbjct: 237 NRTGYCQGSPKFSPDGNRIVF 257 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 20/141 (14%) Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGS 381 G +LYV ++GS+ + + ++ + WSP G+ I FT + + ++ +G+ Sbjct: 58 GISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGT 117 Query: 382 QERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINT------ 433 + + ++ SP+G + F+ G+ S ++ +L+ G + N+ Sbjct: 118 DLQPIATSPAVEDAGAISPNGSLVAFAGTL-GNYKSNIWIQNLDTGALWNVTNSTEVAGD 176 Query: 434 ---------PAYASDPQWVGF 445 PA++ D +W+ F Sbjct: 177 YTLPDGHFRPAWSPDGEWLVF 197 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 87/273 (31%), Gaps = 49/273 (17%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR---------APKRIGNFRSMILAPRFS 266 P+ S KV Y + + V + + + + + Sbjct: 401 FPQMSAQG-KVVYTSQQTVNSSLVTMNADGTGSNDIFDGSRFPVRVNSSNTNGTFQGSWR 459 Query: 267 SNGKRAL------ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-- 318 +G+ + +Y V + +TN + SPD +V+ Sbjct: 460 GDGEVLAVGLGDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPDGRWLVWRE 519 Query: 319 ----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG-DLIAFTKFS------ 367 S+ L M D +S + + P+++P G + I FT+ + Sbjct: 520 FAYSASEDPIPLGLRRMDLTTGDVVALSSSWDNT---PMFAPDGSNRIVFTRRTSWPISG 576 Query: 368 --GEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSR------------KKDG 412 + + + M DGS R L + + N W+ G+ + ++ + Sbjct: 577 PLDDNYDVMTMAVDGSDVRQLTKLACNDAHAVWTHEGK-IAWATGMFGFQDEATIYDNNQ 635 Query: 413 DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 + ++ +G N T++ + + P ++ Sbjct: 636 QPYPFIMQMEADGSNWTVLTQSRWEDTMPLYIP 668 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 104/350 (29%), Gaps = 91/350 (26%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------------- 229 S + S+ + DG R + P+FSP+ ++ + Sbjct: 212 SGWEHTQELSIYAIRPDGTGFRRVANRTGYCQGSPKFSPDGNRIVFYELPMELTYYARVA 271 Query: 230 ---TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG------KRALISVQKDE 280 YD + T DR G + L P++ N K L + Sbjct: 272 EPAFYDVNTAIVSVDFATGTDRQVHASGESGGIKLFPQYVDNQTIGYLVKSLLTNATYPG 331 Query: 281 AMDIYSVDLQSNATERLTNTL--FINISASYSPDS------------------------- 313 +++ + Q + + N + S ++SPD Sbjct: 332 SINYTAAQPQGSVSAAYRNASLVGYHRSPAWSPDGGHMVYEHVEWDPVRPINKPLYSWSK 391 Query: 314 ----------------SQIVFESDREGKEQLYVMQSNGSD----------QKRISQDKEA 347 ++V+ S + L M ++G+ R++ Sbjct: 392 DWEYRFSDVFPQMSAQGKVVYTSQQTVNSSLVTMNADGTGSNDIFDGSRFPVRVNSSNTN 451 Query: 348 SYFDPVWSPQGDLIA------FTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPS 400 F W G+++A F + ++ +GS R + S N PT SP Sbjct: 452 GTFQGSWRGDGEVLAVGLGDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPD 511 Query: 401 GRSLIF----SRKKDGDTGSKLYSIDLNGRNETLI-----NTPAYASDPQ 441 GR L++ + L +DL + + NTP +A D Sbjct: 512 GRWLVWREFAYSASEDPIPLGLRRMDLTTGDVVALSSSWDNTPMFAPDGS 561 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + + V DGS RLL+ E + WSP G ++F+ ++ GD S L Sbjct: 50 MLMNRIAPGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDL 109 Query: 419 YSIDLNGRNETLINT 433 Y + NG + I T Sbjct: 110 YRVRPNGTDLQPIAT 124 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 66/177 (37%), Gaps = 25/177 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK- 251 + ++ +G+ R +T F P SP+ + + + + + R Sbjct: 483 VYLVAANGSWARSMTNGSTNAGF-PTISPDGRWLVWREFAYSASEDPIPLGLRRMDLTTG 541 Query: 252 -RIGNFRSMILAPRFSSNG-KRALISVQK--------DEAMDIYSVDLQSNATERLTNTL 301 + S P F+ +G R + + + D+ D+ ++ + + +LT Sbjct: 542 DVVALSSSWDNTPMFAPDGSNRIVFTRRTSWPISGPLDDNYDVMTMAVDGSDVRQLTKLA 601 Query: 302 FINISASYSPDSS-------------QIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 + A ++ + +++++++ + M+++GS+ ++Q + Sbjct: 602 CNDAHAVWTHEGKIAWATGMFGFQDEATIYDNNQQPYPFIMQMEADGSNWTVLTQSR 658 >gi|121585935|ref|ZP_01675728.1| MdsD protein [Vibrio cholerae 2740-80] gi|121549871|gb|EAX59891.1| MdsD protein [Vibrio cholerae 2740-80] Length = 1001 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NV 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 219 WSPLTGKHTQITTFRGEDRNPVWSA 243 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 98/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ + Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 VWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|70986621|ref|XP_748801.1| Pfs, NACHT and WD domain protein [Aspergillus fumigatus Af293] gi|66846431|gb|EAL86763.1| Pfs, NACHT and WD domain protein [Aspergillus fumigatus Af293] Length = 1454 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 56/314 (17%), Positives = 118/314 (37%), Gaps = 46/314 (14%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGEKGD 172 G+ + D + V LWD + K+ +W R +A S D Sbjct: 1080 GQTVASASDDMTV--WLWDAASGAE---KQVLEGHQNWVRAVA--FSPD----------- 1121 Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 ++V S ++ + D + + + + + FSP+ Q VA A+ D Sbjct: 1122 --------GQTVASASDDKTIRLWDAASGAEKQVLKAHKKWVRAVAFSPDGQTVASASDD 1173 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + L D + + + A FS +G+ S D + ++ D S Sbjct: 1174 K----TIRLWDAASGAEKQVLKGHEKSVRAVAFSPDGQTVA-SASFDTTIRLW--DAASG 1226 Query: 293 ATERLTNTLFINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 A +++ +++A ++SPD + SD + + + + +K++ + E Sbjct: 1227 AEKQVLKGHENSVNAVAFSPDGQTVASASD---DKTIRLWDAASGAEKQVLKGHENWVSA 1283 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRK 409 +SP G +A F I + E+ +++ +++ A +SP G+++ + Sbjct: 1284 VAFSPDGQTVASASFDTT---IQLWDAASGAEKQVLKGHENSVNAVAFSPDGQTVASASN 1340 Query: 410 K---DGDTGSKLYS 420 DT +L+ Sbjct: 1341 DTTISNDTTIRLWD 1354 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 96/266 (36%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++V S ++ + D + + + + FSP+ Q VA A+ D + L Sbjct: 913 QTVASASDDKTIRLWDAASGAEKQVLKGHENWVNAVAFSPDGQTVASASNDM----TIRL 968 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D + + + A FS +G+ S D + ++ D S A +++ Sbjct: 969 WDAASGAEKQVLKGHEKSVNAVAFSPDGQTVA-SASNDMTIRLW--DAASGAEKQVLKGH 1025 Query: 302 FINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 +++A ++SPD + S + + + +K++ + E +SP G Sbjct: 1026 EKSVNAVAFSPDGQTVASASF---DTTIRLWDAASGAEKQVLEGHENCVRAVAFSPDGQT 1082 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKL 418 +A + + + E+ ++E A +SP G+++ + D +L Sbjct: 1083 VASAS---DDMTVWLWDAASGAEKQVLEGHQNWVRAVAFSPDGQTVASASD---DKTIRL 1136 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + + L + + Sbjct: 1137 WDAASGAEKQVLKAHKKWVRAVAFSP 1162 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 19/243 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + + + FSP+ Q VA A+ D + L D + + + + A Sbjct: 894 QVLEGHENSVNAVAFSPDGQTVASASDDK----TIRLWDAASGAEKQVLKGHENWVNAVA 949 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDRE 323 FS +G+ S D + ++ D S A +++ +++A ++SPD + S+ Sbjct: 950 FSPDGQTVA-SASNDMTIRLW--DAASGAEKQVLKGHEKSVNAVAFSPDGQTVASASN-- 1004 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + + + +K++ + E S +SP G +A F I + E Sbjct: 1005 -DMTIRLWDAASGAEKQVLKGHEKSVNAVAFSPDGQTVASASFDTT---IRLWDAASGAE 1060 Query: 384 RLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + ++E A +SP G+++ + D L+ + L + Sbjct: 1061 KQVLEGHENCVRAVAFSPDGQTVASASD---DMTVWLWDAASGAEKQVLEGHQNWVRAVA 1117 Query: 442 WVG 444 + Sbjct: 1118 FSP 1120 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 83/207 (40%), Gaps = 16/207 (7%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y I + Y+M D + + + + A FS +G+ S D+ + ++ Sbjct: 871 YWNQRFNFIEQAYVMHESWDPCIQVLEGHENSVNAVAFSPDGQTVA-SASDDKTIRLW-- 927 Query: 288 DLQSNATERLTNTLFINISA-SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D S A +++ ++A ++SPD + S+ + + + +K++ + E Sbjct: 928 DAASGAEKQVLKGHENWVNAVAFSPDGQTVASASN---DMTIRLWDAASGAEKQVLKGHE 984 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSPSGRSL 404 S +SP G +A I + E+ +++ ++ A +SP G+++ Sbjct: 985 KSVNAVAFSPDGQTVASASND---MTIRLWDAASGAEKQVLKGHEKSVNAVAFSPDGQTV 1041 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLI 431 DT +L+ +G + ++ Sbjct: 1042 A---SASFDTTIRLWDA-ASGAEKQVL 1064 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 98/302 (32%), Gaps = 52/302 (17%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIA-----HTISDDIYQSITG 168 G+ + D + RLWD + + S R +A T++ + + Sbjct: 1164 GQTVASASDDKTI--RLWDAASGAE--KQVLKGHEKSVRAVAFSPDGQTVASASFDTTIR 1219 Query: 169 E------------KGDFNSRILFVS----ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ 212 KG NS ++V S ++ + D + + + Sbjct: 1220 LWDAASGAEKQVLKGHENSVNAVAFSPDGQTVASASDDKTIRLWDAASGAEKQVLKGHEN 1279 Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + FSP+ Q VA A++D + L D + + + + A FS +G+ Sbjct: 1280 WVSAVAFSPDGQTVASASFDT----TIQLWDAASGAEKQVLKGHENSVNAVAFSPDGQTV 1335 Query: 273 L-----ISVQKDEAMDIYSVDLQSNATER-------LTNTLFINIS------ASYSPDSS 314 ++ D + ++ D S A + +T F + S S S + Sbjct: 1336 ASASNDTTISNDTTIRLW--DAASGAEKHKHHLDVVVTTLSFPDNSCLNTDRGSLSLNHQ 1393 Query: 315 QIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 F +R E ++ S Q+ I + V S G+ + SG + Sbjct: 1394 ACNFSIERPENEIFIHKKWVTRSGQRLIWLPPDFRATCTVTS--GNNVVLGHASGGLTFL 1451 Query: 374 GV 375 + Sbjct: 1452 WL 1453 >gi|148555860|ref|YP_001263442.1| peptidase S9 prolyl oligopeptidase [Sphingomonas wittichii RW1] gi|148501050|gb|ABQ69304.1| peptidase S9, prolyl oligopeptidase active site domain protein [Sphingomonas wittichii RW1] Length = 695 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 21/267 (7%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V+S +K ++ ++D R L Q PR+SP+ +++AY D + ++++ Sbjct: 77 VMSDKVKGAIWLVDVASGAQRPLVADASQ----PRWSPDGKRLAYVAADPKGKPQLFV-R 131 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 D A R+ +S +G+ +++ L + Sbjct: 132 WLADDATVRVTQLPDGPQGIAWSPDGRSIAYAMRVPGDPVTLGKAPDKPEGADWAKPLEV 191 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 Y D V G + ++V+ ++G +++S W+P G I F Sbjct: 192 IDKVDYRADGGGYV----EPGYDHIFVVAADGGPPRQLSFGDYQDGGPLSWTPDGRSILF 247 Query: 364 TKFSGEKF-------AIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTG 415 + + I + R L + AP SP G + + D Sbjct: 248 SAVRKPDWQHNVFDPEIYALDVATGAIRALTSREGPDVAPVVSPDGSKVAYLGYDDKRLS 307 Query: 416 SK---LYSIDLNGRNETLINTPAYASD 439 + LY ++ +G I T + Sbjct: 308 WQTTLLYVMNRDGSGARAI-TAGFDRS 333 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 95/328 (28%), Gaps = 78/328 (23%) Query: 113 TGRVIKEGK---DRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGE 169 V ++ D+++ L DV Q + + + R Sbjct: 68 VAYVRRQADVMSDKVKGAIWLVDVASGAQ---RPLVADASQPRWSPD------------- 111 Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 R+ +V+ + D + L I +SP+ + +AYA Sbjct: 112 ----GKRLAYVAADPKGKPQLFVRWLADDATVRVTQLPDGPQGI----AWSPDGRSIAYA 163 Query: 230 TYDDEDI--------------------------------------LRVYLMDTRIDRAPK 251 D + P+ Sbjct: 164 MRVPGDPVTLGKAPDKPEGADWAKPLEVIDKVDYRADGGGYVEPGYDHIFVVAADGGPPR 223 Query: 252 RIGNFRSMILAP-RFSSNGKRALISVQKDEA-------MDIYSVDLQSNATERLTNTLFI 303 ++ P ++ +G+ L S + +IY++D+ + A LT+ Sbjct: 224 QLSFGDYQDGGPLSWTPDGRSILFSAVRKPDWQHNVFDPEIYALDVATGAIRALTSREGP 283 Query: 304 NISASYSPDSSQIVFESDREGK-----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 +++ SPD S++ + + + LYVM +GS + I+ + S W+ G Sbjct: 284 DVAPVVSPDGSKVAYLGYDDKRLSWQTTLLYVMNRDGSGARAITAGFDRSIDKAEWAADG 343 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + I + DG L+ Sbjct: 344 RSLYAQYDDRGINRIARVTLDGKVTELV 371 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 21/189 (11%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR----VYLMDTRID 247 + +D IR LT SR+ P SP+ KVAY YDD+ + +Y+M+ Sbjct: 263 EIYALDVATGAIRALT-SREGPDVAPVVSPDGSKVAYLGYDDKRLSWQTTLLYVMNRDGS 321 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A F I ++++G+ I V L TE + ++ Sbjct: 322 GARAITAGFDRSIDKAEWAADGRSLYAQYDDRGINRIARVTLDGKVTELVGGMTGTDLDR 381 Query: 308 SYS------PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW------- 354 YS + I F S + + ++G +++++ E Sbjct: 382 PYSGGDFSVARTGAIAFTSGSALRPADLSV-ASGGRVRQLTRLNEDFLGAKSLGQVRELA 440 Query: 355 --SPQGDLI 361 +P G + Sbjct: 441 VKAPDGRAV 449 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 395 PTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 P SP G+++ + R++ ++ +D+ + + A AS P+W Sbjct: 59 PQISPDGKTVAYVRRQADVMSDKVKGAIWLVDVASGAQRPLV--ADASQPRWSP 110 >gi|295676345|ref|YP_003604869.1| WD40 repeat, subgroup [Burkholderia sp. CCGE1002] gi|295436188|gb|ADG15358.1| WD40 repeat, subgroup [Burkholderia sp. CCGE1002] Length = 1445 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 74/426 (17%), Positives = 153/426 (35%), Gaps = 72/426 (16%) Query: 62 GGKVSEVVS-KDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVL--VTGRVIK 118 G +++++ ++L S F+ + ++ + + W++ QV+ +TG Sbjct: 940 GQAIAQLIGHRELVSSAAFSPDGR-----RVVSASDDKTARVWDAANGQVITQLTGHQGP 994 Query: 119 ------EGKDRLRVEF------RLWDVKDR---KQIIGKKFFSS-----PASWRKIAHTI 158 R V R+WD Q+ G + S P R + T Sbjct: 995 VFSAAFSPDGRRVVTASDDKTARVWDAATGHVITQLTGHQGPVSSAAFTPDGLRVV--TA 1052 Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMD--------RDGANIRY----- 205 SDD T D + + G + ++ +D RDG + Sbjct: 1053 SDD----KTARVWDAATGQMIAQLIGHEGPVNVAVFSLDGQRVLTASRDGTARAWDAGQG 1108 Query: 206 --LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 L + + F P+ Q+V A+ D + D R + R + Sbjct: 1109 ILLLSGHQEPVVSAAFGPDGQRVVTASRDR----TARVWDVATGRQIALLSGHRGWVYFA 1164 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 FS +G+R + + D+ +++ +L+ +SA++SPDS ++V + + Sbjct: 1165 AFSPDGRRIV-TTSADQTARVWNA-AAGKQIAQLSGHQGTVLSAAFSPDSQRVV-TASAD 1221 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +L+ + I + V+SP G + + G V ++ Sbjct: 1222 GTARLW--DATTGKLILILGGHQEPVDSVVYSPDGQRVVTASWDGTA---RVWDAATGKQ 1276 Query: 384 RLLVED--SNLQAPTWSPSGRSLIFSRKK------DGDTGSKLYSIDLNGRNETLINTPA 435 L++ + + +SP GR ++ + D TG ++ G ++ +++ A Sbjct: 1277 ILVLSGHHGTVFSAAFSPDGRRVVTAAADGTARVWDAATGKQIARF---GGHQRAVSSAA 1333 Query: 436 YASDPQ 441 ++ D Q Sbjct: 1334 FSPDGQ 1339 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 123/353 (34%), Gaps = 49/353 (13%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKK-------FFSSPASWRKIAHTISD------- 160 RV+ DR R+WD KQI+ F + R++A +D Sbjct: 838 RVVTASADR---TARVWDASTGKQIVQLGGHQDLVYFAAFNPDGRRVATASADRTARVWD 894 Query: 161 -----DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 I Q + F++ VVS + V D +++ Sbjct: 895 AATGKQIVQLNGHQGPVFSAAFSPDGRRVVSASADRTARVWDAATGQAIAQLIGHRELVS 954 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 FSP+ ++V A+ D + D + ++ + + + FS +G+R +++ Sbjct: 955 SAAFSPDGRRVVSASDDK----TARVWDAANGQVITQLTGHQGPVFSAAFSPDGRR-VVT 1009 Query: 276 VQKDEAMDIYSVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 D+ ++ D + +LT SA+++PD ++V SD + V + Sbjct: 1010 ASDDKTARVW--DAATGHVITQLTGHQGPVSSAAFTPDGLRVVTASD---DKTARVWDAA 1064 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 E V+S G + G A D Q LL+ Sbjct: 1065 TGQMIAQLIGHEGPVNVAVFSLDGQRVLTASRDGTARAW-----DAGQGILLLSGHQEPV 1119 Query: 395 PT--WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 + + P G+ ++ + + D ++++ + GR L++ WV F Sbjct: 1120 VSAAFGPDGQRVVTASR---DRTARVWDV-ATGRQIALLSGHRG-----WVYF 1163 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 89/266 (33%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + VV+ + V D L ++ FSP+ +++ + D + Sbjct: 1129 QRVVTASRDRTARVWDVATGRQIALLSGHRGWVYFAAFSPDGRRIVTTSADQ----TARV 1184 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 + + ++ + +L+ FS + +R +++ D ++ D + L Sbjct: 1185 WNAAAGKQIAQLSGHQGTVLSAAFSPDSQR-VVTASADGTARLW--DATTGKLILILGGH 1241 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S YSPD ++V + +G +++ + Q + + F +SP G Sbjct: 1242 QEPVDSVVYSPDGQRVV-TASWDGTARVW--DAATGKQILVLSGHHGTVFSAAFSPDGRR 1298 Query: 361 IAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + G V ++ R + + +SP G+ ++ + D +++ Sbjct: 1299 VVTAAADGTA---RVWDAATGKQIARFGGHQRAVSSAAFSPDGQRVVTAS---ADQTARV 1352 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + L S + Sbjct: 1353 WDAATGRVIAQLAGHRGPVSSAAFSP 1378 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 83/266 (31%), Gaps = 19/266 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + VV+ + V D +++ F P+ ++V A+ D + Sbjct: 795 KRVVTASWDGTARVWDAATGKQIVQLSGHQGLVYSAAFDPDGRRVVTASADR----TARV 850 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D + ++G + ++ F+ +G+R + D ++ +L Sbjct: 851 WDASTGKQIVQLGGHQDLVYFAAFNPDGRRVA-TASADRTARVWDA-ATGKQIVQLNGHQ 908 Query: 302 FINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 SA++SPD ++V S DR + V + +SP G Sbjct: 909 GPVFSAAFSPDGRRVVSASADRTAR----VWDAATGQAIAQLIGHRELVSSAAFSPDGRR 964 Query: 361 IAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + V Q +L + + +SP GR ++ + D +++ Sbjct: 965 VVSASDDKTA---RVWDAANGQVITQLTGHQGPVFSAAFSPDGRRVVTASD---DKTARV 1018 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + L S + Sbjct: 1019 WDAATGHVITQLTGHQGPVSSAAFTP 1044 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 93/251 (37%), Gaps = 21/251 (8%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPR-FSPNQQKVAYATYDDEDILRVYLMDTR 245 G + L +M A+++ S + + FSP+ ++V A++D + D Sbjct: 757 GSVDAELELMRGAQASMQIALLSGHRDAVDSAVFSPDGKRVVTASWDG----TARVWDAA 812 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + ++ + ++ + F +G+R +++ D ++ +L + Sbjct: 813 TGKQIVQLSGHQGLVYSAAFDPDGRR-VVTASADRTARVWDAS-TGKQIVQLGGHQDLVY 870 Query: 306 SASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 A+++PD ++ S DR + V + Q + F +SP G + Sbjct: 871 FAAFNPDGRRVATASADRTAR----VWDAATGKQIVQLNGHQGPVFSAAFSPDGRRVVSA 926 Query: 365 KFSGEKFAIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 V Q +L+ + + +SP GR ++ + D ++++ Sbjct: 927 SADRTA---RVWDAATGQAIAQLIGHRELVSSAAFSPDGRRVVSASD---DKTARVWDA- 979 Query: 423 LNGRNETLINT 433 NG+ T + Sbjct: 980 ANGQVITQLTG 990 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 97/295 (32%), Gaps = 40/295 (13%) Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 R+WDV +QI H +Y + G +V+ Sbjct: 1141 RVWDVATGRQIALLS-----------GHR--GWVYFAAFSPDG----------RRIVTTS 1177 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + V + + FSP+ Q+V A+ D L D + Sbjct: 1178 ADQTARVWNAAAGKQIAQLSGHQGTVLSAAFSPDSQRVVTASADG----TARLWDATTGK 1233 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 +G + + + +S +G+R +++ D ++ L+ SA+ Sbjct: 1234 LILILGGHQEPVDSVVYSPDGQR-VVTASWDGTARVWDA-ATGKQILVLSGHHGTVFSAA 1291 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD ++V + +G +++ + Q + + +SP G + Sbjct: 1292 FSPDGRRVV-TAAADGTARVW--DAATGKQIARFGGHQRAVSSAAFSPDGQRVVTASADQ 1348 Query: 369 EKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 V + +L + + +SP G+ ++ + D ++++ I Sbjct: 1349 TA---RVWDAATGRVIAQLAGHRGPVSSAAFSPDGQRVVTAS---ADQTARVWPI 1397 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 47/226 (20%) Query: 76 SDVFNLISQDSFKQKITNPDSIPRFQDWNSL-GAQVLVTG-------RVIKEGKDRLRVE 127 S F+ S Q++ + + W++ G +L+ G V+ + V Sbjct: 1205 SAAFSPDS-----QRVVTASADGTARLWDATTGKLILILGGHQEPVDSVVYSPDGQRVVT 1259 Query: 128 F------RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS 181 R+WD KQI+ H ++ + G Sbjct: 1260 ASWDGTARVWDAATGKQILVLS-----------GHH--GTVFSAAFSPDG---------- 1296 Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 VV+ + V D + + FSP+ Q+V A+ D + Sbjct: 1297 RRVVTAAADGTARVWDAATGKQIARFGGHQRAVSSAAFSPDGQRVVTASADQ----TARV 1352 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 D R ++ R + + FS +G+R +++ D+ ++ + Sbjct: 1353 WDAATGRVIAQLAGHRGPVSSAAFSPDGQR-VVTASADQTARVWPI 1397 >gi|262196482|ref|YP_003267691.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262079829|gb|ACY15798.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1547 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 27/279 (9%) Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 H D + + G +VS ++ V DG+N + D ++ Sbjct: 1207 HGHDDAVMSASFSPDG----------TRLVSASADKTVRVWGTDGSNEPLILRGHDSVVI 1256 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 FSP+ + A+ D V + P + + RFS +G + + Sbjct: 1257 SASFSPDGAHLVTASADK----TVRVWRADGAGEPLTLRGHDEAVWTARFSPDGTHLV-T 1311 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D+ + ++ D + L + SA YS D +Q+V S + + V Q++G Sbjct: 1312 ASADQTVRVWKAD-GTGEPLVLRGHDNVVWSADYSRDGTQLVSAS---WDKTVRVWQADG 1367 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQ 393 + + + + + + +SP G I + + V K DG+ L++ + Sbjct: 1368 TGEPLVLRGHDEAVMSASFSPDGTNIVSASWDKT---VRVWKADGAGVPLILRGHGEAVL 1424 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + ++S GR ++ + + D +++ D G L Sbjct: 1425 SASFSQDGRYIVSTSR---DKTIRIWRADGTGEPVLLRP 1460 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 106/314 (33%), Gaps = 36/314 (11%) Query: 108 AQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSIT 167 + ++T R EG L K + + + H D + + Sbjct: 916 IEAVMTARFSPEGT-------HLVSASADKTVRVWRADGTGQPVVLRGHE--DAVMSASF 966 Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 G +VS + ++ V DG + + + FSP+ ++ Sbjct: 967 SPDGAH----------IVSASVDKTVRVWRADGTGQPIVLRGHEASVMSASFSPDGARIV 1016 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 A+ D V + T + + + FS +G S DE + ++ Sbjct: 1017 SASTDK----TVRVWRTDGTGQALVLHGHDGAVTSASFSPDGAHIA-SASSDETIRVWRA 1071 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 D L+ S S+ PD SQIV S + + V +++G+ R+ + + Sbjct: 1072 DGA-GQPVILSGHGETVWSVSFRPDGSQIVSASH---DKTVRVWRADGTGNSRVLRGHDD 1127 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLI 405 +SP G I T + V DG+ E L++ + + ++SP G + Sbjct: 1128 FVMSASFSPDGTQIVSTSSDKT---VRVWPADGAGEPLILRGHDDVVWSASFSPEGTHI- 1183 Query: 406 FSRKKDGDTGSKLY 419 D +++ Sbjct: 1184 --TSASSDKTVRIW 1195 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 98/251 (39%), Gaps = 19/251 (7%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +VS ++ V DG + D + FSP+ +A A+ D+ + + Sbjct: 1014 RIVSASTDKTVRVWRTDGTGQALVLHGHDGAVTSASFSPDGAHIASASSDE----TIRVW 1069 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 P + + + F +G + + S D+ + ++ D + + L Sbjct: 1070 RADGAGQPVILSGHGETVWSVSFRPDGSQIV-SASHDKTVRVWRAD-GTGNSRVLRGHDD 1127 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 +SAS+SPD +QIV S + + V ++G+ + I + + + +SP+G I Sbjct: 1128 FVMSASFSPDGTQIVSTSS---DKTVRVWPADGAGEPLILRGHDDVVWSASFSPEGTHIT 1184 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 + + S E L + + + ++SP G L+ D +++ Sbjct: 1185 SASSDKT---VRIWGPGDSDEPLALHGHDDAVMSASFSPDGTRLV---SASADKTVRVW- 1237 Query: 421 IDLNGRNETLI 431 +G NE LI Sbjct: 1238 -GTDGSNEPLI 1247 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 14/229 (6%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 V+ ++ V DGA D+ ++ RFSP+ + A+ D V + Sbjct: 1268 VTASADKTVRVWRADGAGEPLTLRGHDEAVWTARFSPDGTHLVTASADQ----TVRVWKA 1323 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 P + +++ + +S +G + + S D+ + ++ D + L Sbjct: 1324 DGTGEPLVLRGHDNVVWSADYSRDGTQLV-SASWDKTVRVWQAD-GTGEPLVLRGHDEAV 1381 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +SAS+SPD + IV S + + V +++G+ I + + +S G I T Sbjct: 1382 MSASFSPDGTNIVSAS---WDKTVRVWKADGAGVPLILRGHGEAVLSASFSQDGRYIVST 1438 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKD 411 I + + DG+ E +L+ T +SP G+ ++ + Sbjct: 1439 SRDKT---IRIWRADGTGEPVLLRPPEQWDNTVNFSPDGQRIVSASNDG 1484 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 85/239 (35%), Gaps = 13/239 (5%) Query: 159 SDDIYQSIT---GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 +D + +T ++ + +R +V+ ++ V DG + D +++ Sbjct: 1281 ADGAGEPLTLRGHDEAVWTARFSPDGTHLVTASADQTVRVWKADGTGEPLVLRGHDNVVW 1340 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +S + ++ A++D V + P + +++ FS +G + S Sbjct: 1341 SADYSRDGTQLVSASWDK----TVRVWQADGTGEPLVLRGHDEAVMSASFSPDGTNIV-S 1395 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D+ + ++ D + + +SAS+S D IV S + + + +++G Sbjct: 1396 ASWDKTVRVWKADGAGVPLILRGHGEAV-LSASFSQDGRYIVSTSR---DKTIRIWRADG 1451 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG-VMKKDGSQERLLVEDSNLQ 393 + + + + E +SP G I G + RL S Sbjct: 1452 TGEPVLLRPPEQWDNTVNFSPDGQRIVSASNDGTVHVWRDLAPVTLDDPRLWTRTSYCM 1510 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 9/187 (4%) Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 + D AP + ++ RFS G + S D+ + ++ D + L Sbjct: 903 LQSDIAPVVFTDHIEAVMTARFSPEGTHLV-SASADKTVRVWRAD-GTGQPVVLRGHEDA 960 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SAS+SPD + IV S + + V +++G+ Q + + EAS +SP G I Sbjct: 961 VMSASFSPDGAHIVSASV---DKTVRVWRADGTGQPIVLRGHEASVMSASFSPDGARIV- 1016 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + + + G L D + + ++SP G + + D +++ D Sbjct: 1017 SASTDKTVRVWRTDGTGQALVLHGHDGAVTSASFSPDGAHIASASS---DETIRVWRADG 1073 Query: 424 NGRNETL 430 G+ L Sbjct: 1074 AGQPVIL 1080 >gi|331695060|ref|YP_004331299.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949749|gb|AEA23446.1| peptidase S9 prolyl oligopeptidase active site domain protein [Pseudonocardia dioxanivorans CB1190] Length = 660 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 32/286 (11%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + + ++ + + DG++ + + +PR+SP+ +++A+ + D Sbjct: 26 FVVTHVDMAENTYRSGVWLAAADGSSPPQPFSAGEHGDGQPRWSPDGRRLAFTSRRGTDE 85 Query: 237 -LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +++ + I I P +S +G R + ++ + ++ Sbjct: 86 HPTLHVAPVDGPGEVRTICERPEAIEDPAWSPDGTRIAFT-SRERTARFDEPEEKARPPR 144 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 R+ + + D + VF V+ +GS + ++ P WS Sbjct: 145 RIDRLVTRLDGEGWIVDRPRSVF-----------VVAVDGSGPPTLVAGGPYNHGAPSWS 193 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKD--------GSQERLLV-EDSNLQAPTWSPSGRSLIF 406 P IA T + + + D GS+ R L + P+WSP G + Sbjct: 194 PDSATIAVTADRTPDWDLTPILADVLLVDPTGGSEPRALTRRTFAHRLPSWSPDGTRIAV 253 Query: 407 SRKKDG--DTGSKLYSIDLNGRNETLINTPAY--------ASDPQW 442 + + +++ +D+ ET++ A P W Sbjct: 254 LAEDSRIIHSHTQVAVVDVASGEETVLTAALDRQCAPMPGARQPVW 299 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 50/236 (21%) Query: 259 MILAPRFSSNGKRALISV------QKDEAMDIYSVDLQSNATER-LTNTLFINISASYSP 311 I PR S +G++ V + ++ ++ + + + +SP Sbjct: 11 QISDPRVSPDGRQVAFVVTHVDMAENTYRSGVWLAAADGSSPPQPFSAGEHGDGQPRWSP 70 Query: 312 DSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 D ++ F S R L+V +G + R ++ + DP WSP G IAFT Sbjct: 71 DGRRLAFTSRRGTDEHPTLHVAPVDGPGEVRTICERPEAIEDPAWSPDGTRIAFTSRERT 130 Query: 367 -----------------------SGEKF------AIGVMKKDGSQERLLVEDS--NLQAP 395 GE + ++ V+ DGS LV N AP Sbjct: 131 ARFDEPEEKARPPRRIDRLVTRLDGEGWIVDRPRSVFVVAVDGSGPPTLVAGGPYNHGAP 190 Query: 396 TWSPSGRSLIFSRKKDGDTG-----SKLYSIDLNGRNETLINTPAYASD--PQWVG 444 +WSP ++ + + D + + +D G +E T + P W Sbjct: 191 SWSPDSATIAVTADRTPDWDLTPILADVLLVDPTGGSEPRALTRRTFAHRLPSWSP 246 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 21/223 (9%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------ILRVYLM 242 S+ V+ DG+ L P +SP+ +A D + V L+ Sbjct: 162 RPRSVFVVAVDGSGPPTLVAGGPYNHGAPSWSPDSATIAVTADRTPDWDLTPILADVLLV 221 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE----AMDIYSVDLQSNATERLT 298 D P+ + P +S +G R + + + VD+ S LT Sbjct: 222 DPTGGSEPRALTRRTFAHRLPSWSPDGTRIAVLAEDSRIIHSHTQVAVVDVASGEETVLT 281 Query: 299 NTLFIN-------ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD 351 L + D +V + G + + + G D + + Sbjct: 282 AALDRQCAPMPGARQPVW--DGDDLVLSWEDAGNVHVGRVPATGGDVA--TVVGGELWVT 337 Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 G L + + V+ +DG++ RL A Sbjct: 338 GHDLAGGTLAFTAATATALPELFVLDRDGTRRRLTTAGDAFHA 380 >gi|229526314|ref|ZP_04415718.1| protease-related protein [Vibrio cholerae bv. albensis VL426] gi|229336472|gb|EEO01490.1| protease-related protein [Vibrio cholerae bv. albensis VL426] Length = 1084 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGAVSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NV 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 219 WSPLTGKHTQITTFRGEDRNPVWSA 243 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 98/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ + Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPLTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 VWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|116624825|ref|YP_826981.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227987|gb|ABJ86696.1| serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] Length = 886 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 253 IGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 +G + P S +G RA + + + DI+ +D+ R T+ + ++SP Sbjct: 605 VGPPGNYGSGPTLSPDGTRAAVDKIDAAGSRDIWVLDIARGVATRSTSDAAQDHGPAWSP 664 Query: 312 DSSQIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSG 368 D +++VF S R G + +Y +S+G+ ++ + F WSP + + Sbjct: 665 DGTRLVFSSARGAAGTDGIYQRESSGTGKEEPLLQGHSLIFPNGWSPDVRYLLYSVTGQK 724 Query: 369 EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + ++ G+ L N + +SP GR + ++ + G + S G Sbjct: 725 TGSDLLLLPAAGTPPVPYLEGPYNEKQGQFSPDGRWIAYASDETGSFEVYVQSFPA-GAG 783 Query: 428 ETLINTPAYASDPQWV 443 + L++T S P+W Sbjct: 784 KFLVSTAG-GSQPRWS 798 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 4/193 (2%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P SP+ + A D ++++D A R + + P +S +G R + S Sbjct: 615 PTLSPDGTRAAVDKIDAAGSRDIWVLDIARGVAT-RSTSDAAQDHGPAWSPDGTRLVFSS 673 Query: 277 QKD--EAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + IY + E L + +SPD +++ + ++ Sbjct: 674 ARGAAGTDGIYQRESSGTGKEEPLLQGHSLIFPNGWSPDVRYLLYSVTGQKTGSDLLLLP 733 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 + + +SP G IA+ F + V + LV + Sbjct: 734 AAGTPPVPYLEGPYNEKQGQFSPDGRWIAYASDETGSFEVYVQSFPAGAGKFLVSTAGGS 793 Query: 394 APTWSPSGRSLIF 406 P WS G+ + + Sbjct: 794 QPRWSRDGKEIFY 806 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 17/237 (7%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT-YDDEDILRVYLMDT 244 + V+D + + S P +SP+ ++ +++ +Y ++ Sbjct: 630 DAAGSRDIWVLDI-ARGVATRSTSDAAQDHGPAWSPDGTRLVFSSARGAAGTDGIYQRES 688 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNTLFI 303 + + S+I +S + + L SV + D+ + + Sbjct: 689 SGTGKEEPLLQGHSLIFPNGWSPDVRYLLYSVTGQKTGSDLLLLPAAGTPPVPYLEGPYN 748 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 +SPD I + SD G ++YV K + S P WS G I + Sbjct: 749 EKQGQFSPDGRWIAYASDETGSFEVYVQSFPAGAGKFLVSTAGGS--QPRWSRDGKEIFY 806 Query: 364 TKFSGEKFAIGVMKK----DGSQERLLVEDS--------NLQAPTWSPSGRSLIFSR 408 + A+ V + L + + S G+ + S Sbjct: 807 INANARLTAVAVKTAPRFETTGTPQPLFDPQIPPGALADSFFHYDVSADGKRFLVSS 863 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 16/174 (9%) Query: 264 RFSSNGKRALISVQK-DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 S +G++ D ++ L S A L T + +SPDS I F Sbjct: 343 ALSPDGRQLAFIASGADGRPMLWVRPLDSIAARALPGTEGAALLPFWSPDSRVIGFMVQ- 401 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 ++ +++ G + + + WS G ++ F G F + + G Sbjct: 402 ---GKVKSIEAAGGTPQTL-CEVPGQVIGGSWSRDG-VVLFGTPDGGLFRV---SQAGGA 453 Query: 383 ERLLVEDSNLQA------PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 L + P + P GR ++ + +Y L+ + Sbjct: 454 PTRLTASDDSHGEFGHLRPWFLPDGRHFLYFSRSIKREVVGIYLATLDDNGKQR 507 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 86/307 (28%), Gaps = 36/307 (11%) Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQ----ILFEPRF 219 Q++ G V+ G L + + G LT S D P F Sbjct: 415 QTLCEVPGQVIGGSWSRDGVVLFGTPDGGLFRVSQAGGAPTRLTASDDSHGEFGHLRPWF 474 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN-----GKRALI 274 P+ + Y + + + + T D +R + A G + Sbjct: 475 LPDGRHFLYFSRSIKREVVGIYLATLDDNGKQRKRLVATDQGAAYAPPAAGMQYGHLLFL 534 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV--FESDREGKEQLYVMQ 332 ++ + +D +S + S++ F S Y Sbjct: 535 ---REGTLMALPLDARS-------FEPAGDPFPVAEHVGSRLAMGFFSVSANGVLAYRNG 584 Query: 333 SNGSDQKRISQDKEASY-----------FDPVWSPQGDLIAFTKFSG-EKFAIGVMKKD- 379 + S + + D++ P SP G A K I V+ Sbjct: 585 AAASGSQLMWFDRQGIALGAVGPPGNYGSGPTLSPDGTRAAVDKIDAAGSRDIWVLDIAR 644 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS--IDLNGRNETLINTPAYA 437 G R + + P WSP G L+FS + +Y G+ E L+ + Sbjct: 645 GVATRSTSDAAQDHGPAWSPDGTRLVFSSARGAAGTDGIYQRESSGTGKEEPLLQGHSLI 704 Query: 438 SDPQWVG 444 W Sbjct: 705 FPNGWSP 711 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 13/136 (9%) Query: 304 NISASYSPDSSQIVF-ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + + SPD Q+ F S +G+ L+V + + + E + P WSP +I Sbjct: 339 DTGLALSPDGRQLAFIASGADGRPMLWVRPLDSIAARAL-PGTEGAALLPFWSPDSRVIG 397 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 F + ++ G + L E + +WS G ++F G L+ + Sbjct: 398 FMVQG----KVKSIEAAGGTPQTLCEVPGQVIGGSWSRDG-VVLF-----GTPDGGLFRV 447 Query: 422 DLNGRNETLINTPAYA 437 G T + + Sbjct: 448 SQAGGAPTRLTASDDS 463 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 17/180 (9%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + +++ A G L P +S + + VQ Sbjct: 343 ALSPDGRQLAFIASGADGRPMLWVRPLDSIAARALPGT-EGAALLPFWSPDSRVIGFMVQ 401 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + S++ + L I S+S D +V +G L+ + G Sbjct: 402 G----KVKSIEAAGGTPQTLCEVPGQVIGGSWSRDG--VVLFGTPDGG--LFRVSQAGGA 453 Query: 338 QKRIS----QDKEASYFDPVWSPQGDLIAFTKFSGEK----FAIGVMKKDGSQERLLVED 389 R++ E + P + P G + S ++ + + +G Q + LV Sbjct: 454 PTRLTASDDSHGEFGHLRPWFLPDGRHFLYFSRSIKREVVGIYLATLDDNGKQRKRLVAT 513 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 20/158 (12%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L V D R L P + P +SP+ + + + + P+ Sbjct: 364 LWVRPLDSIAARAL-PGTEGAALLPFWSPDSRVIGFMVQGKVKSIEA------AGGTPQT 416 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-----NTLFINISA 307 + ++ +S +G ++ D ++ V A RLT + F ++ Sbjct: 417 LCEVPGQVIGGSWSRDG--VVLFGTPDGG--LFRVSQAGGAPTRLTASDDSHGEFGHLRP 472 Query: 308 SYSPDSSQIVFESDREGKE----QLYVMQSNGSDQKRI 341 + PD ++ S +E L + NG +KR+ Sbjct: 473 WFLPDGRHFLYFSRSIKREVVGIYLATLDDNGKQRKRL 510 >gi|121729769|ref|ZP_01682207.1| tricorn protease [Vibrio cholerae V52] gi|147671883|ref|YP_001214930.1| tricorn protease [Vibrio cholerae O395] gi|153816717|ref|ZP_01969384.1| tricorn protease [Vibrio cholerae NCTC 8457] gi|227811674|ref|YP_002811684.1| putative tricorn protease [Vibrio cholerae M66-2] gi|229506776|ref|ZP_04396285.1| protease-related protein [Vibrio cholerae BX 330286] gi|229510429|ref|ZP_04399909.1| protease-related protein [Vibrio cholerae B33] gi|229517440|ref|ZP_04406885.1| protease-related protein [Vibrio cholerae RC9] gi|229605250|ref|YP_002875954.1| protease-related protein [Vibrio cholerae MJ-1236] gi|254850313|ref|ZP_05239663.1| tricorn protease [Vibrio cholerae MO10] gi|298499912|ref|ZP_07009718.1| tricorn protease [Vibrio cholerae MAK 757] gi|121628491|gb|EAX60978.1| tricorn protease [Vibrio cholerae V52] gi|126512736|gb|EAZ75330.1| tricorn protease [Vibrio cholerae NCTC 8457] gi|146314266|gb|ABQ18806.1| tricorn protease [Vibrio cholerae O395] gi|227010816|gb|ACP07027.1| putative tricorn protease [Vibrio cholerae M66-2] gi|227014678|gb|ACP10887.1| putative tricorn protease [Vibrio cholerae O395] gi|229345476|gb|EEO10449.1| protease-related protein [Vibrio cholerae RC9] gi|229352874|gb|EEO17814.1| protease-related protein [Vibrio cholerae B33] gi|229357127|gb|EEO22045.1| protease-related protein [Vibrio cholerae BX 330286] gi|229371736|gb|ACQ62158.1| protease-related protein [Vibrio cholerae MJ-1236] gi|254846018|gb|EET24432.1| tricorn protease [Vibrio cholerae MO10] gi|297541893|gb|EFH77944.1| tricorn protease [Vibrio cholerae MAK 757] Length = 1084 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NV 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 219 WSPLTGKHTQITTFRGEDRNPVWSA 243 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 98/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ + Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 VWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|229522722|ref|ZP_04412138.1| protease-related protein [Vibrio cholerae TM 11079-80] gi|229340707|gb|EEO05713.1| protease-related protein [Vibrio cholerae TM 11079-80] Length = 1084 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESCVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++RI + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRIL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIGVMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESCVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRIL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 219 WSPRTGKHTQITTFRGEDRNPVWSA 243 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 171 REQRIL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPRTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|317037459|ref|XP_001398515.2| hypothetical protein ANI_1_970164 [Aspergillus niger CBS 513.88] Length = 650 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 25/198 (12%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + L V + DG+N R L + + ++SP+ + + + + D Sbjct: 35 SELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGTDL 94 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQ-KDEAMDIYSVDLQSNATERLTNT--------- 300 + I ++ A S NG + + +I+ +L + A +TN+ Sbjct: 95 QPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIWIQNLDTGALWNVTNSTEVAGDYTL 154 Query: 301 LFINISASYSPDSSQIVFESDREGKEQ---------------LYVMQSNGSDQKRISQDK 345 + ++SPD +VF SDR + +Y ++ +G+ +R++ Sbjct: 155 PDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQELSIYAIRPDGTGFRRVANRT 214 Query: 346 EASYFDPVWSPQGDLIAF 363 P +SP G+ I F Sbjct: 215 GYCQGSPKFSPDGNRIVF 232 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 74/201 (36%), Gaps = 28/201 (13%) Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK--DEAMDIYSVDLQS 291 I +Y+ + +GN + ++S +G+ + + ++ D D+Y V Sbjct: 32 PGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNG 91 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKE---- 346 + + + + + + SP+ S + F K +++ + ++ E Sbjct: 92 TDLQPIATSPAVEDAGAISPNGSLVAFAGTLGNYKSNIWIQNLDTGALWNVTNSTEVAGD 151 Query: 347 ----ASYFDPVWSPQGDLIAFTKFSGEKFA---------------IGVMKKDGSQERLLV 387 +F P WSP G+ + FT + I ++ DG+ R + Sbjct: 152 YTLPDGHFRPAWSPDGEWLVFTSDRNTPWRGHNNISGWEHTQELSIYAIRPDGTGFRRVA 211 Query: 388 EDSNLQ--APTWSPSGRSLIF 406 + +P +SP G ++F Sbjct: 212 NRTGYCQGSPKFSPDGNRIVF 232 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 20/141 (14%) Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS--GEKFAIGVMKKDGS 381 G +LYV ++GS+ + + ++ + WSP G+ I FT + + ++ +G+ Sbjct: 33 GISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDLYRVRPNGT 92 Query: 382 QERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINT------ 433 + + ++ SP+G + F+ G+ S ++ +L+ G + N+ Sbjct: 93 DLQPIATSPAVEDAGAISPNGSLVAFAGTL-GNYKSNIWIQNLDTGALWNVTNSTEVAGD 151 Query: 434 ---------PAYASDPQWVGF 445 PA++ D +W+ F Sbjct: 152 YTLPDGHFRPAWSPDGEWLVF 172 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 87/273 (31%), Gaps = 49/273 (17%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR---------APKRIGNFRSMILAPRFS 266 P+ S KV Y + + V + + + + + Sbjct: 376 FPQMSAQG-KVVYTSQQTVNSSLVTMNADGTGSNDIFDGSRFPVRVNSSNTNGTFQGSWR 434 Query: 267 SNGKRAL------ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF-- 318 +G+ + +Y V + +TN + SPD +V+ Sbjct: 435 GDGEVLAVGLGDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPDGRWLVWRE 494 Query: 319 ----ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG-DLIAFTKFS------ 367 S+ L M D +S + + P+++P G + I FT+ + Sbjct: 495 FAYSASEDPIPLGLRRMDLTTGDVVALSSSWDNT---PMFAPDGSNRIVFTRRTSWPISG 551 Query: 368 --GEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSR------------KKDG 412 + + + M DGS R L + + N W+ G+ + ++ + Sbjct: 552 PLDDNYDVMTMAVDGSDVRQLTKLACNDAHAVWTHEGK-IAWATGMFGFQDEATIYDNNQ 610 Query: 413 DTGSKLYSIDLNGRNETLINTPAY-ASDPQWVG 444 + ++ +G N T++ + + P ++ Sbjct: 611 QPYPFIMQMEADGSNWTVLTQSRWEDTMPLYIP 643 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 104/350 (29%), Gaps = 91/350 (26%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------------- 229 S + S+ + DG R + P+FSP+ ++ + Sbjct: 187 SGWEHTQELSIYAIRPDGTGFRRVANRTGYCQGSPKFSPDGNRIVFYELPMELTYYARVA 246 Query: 230 ---TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG------KRALISVQKDE 280 YD + T DR G + L P++ N K L + Sbjct: 247 EPAFYDVNTAIVSVDFATGTDRQVHASGESGGIKLFPQYVDNQTIGYLVKSLLTNATYPG 306 Query: 281 AMDIYSVDLQSNATERLTNTL--FINISASYSPDS------------------------- 313 +++ + Q + + N + S ++SPD Sbjct: 307 SINYTAAQPQGSVSAAYRNASLVGYHRSPAWSPDGGHMVYEHVEWDPVRPINKPLYSWSK 366 Query: 314 ----------------SQIVFESDREGKEQLYVMQSNGSD----------QKRISQDKEA 347 ++V+ S + L M ++G+ R++ Sbjct: 367 DWEYRFSDVFPQMSAQGKVVYTSQQTVNSSLVTMNADGTGSNDIFDGSRFPVRVNSSNTN 426 Query: 348 SYFDPVWSPQGDLIA------FTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPS 400 F W G+++A F + ++ +GS R + S N PT SP Sbjct: 427 GTFQGSWRGDGEVLAVGLGDWFEYRYANPGWVYLVAANGSWARSMTNGSTNAGFPTISPD 486 Query: 401 GRSLIF----SRKKDGDTGSKLYSIDLNGRNETLI-----NTPAYASDPQ 441 GR L++ + L +DL + + NTP +A D Sbjct: 487 GRWLVWREFAYSASEDPIPLGLRRMDLTTGDVVALSSSWDNTPMFAPDGS 536 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + + V DGS RLL+ E + WSP G ++F+ ++ GD S L Sbjct: 25 MLMNRIAPGISELYVANADGSNPRLLLGNESTFDYHAQWSPDGEWIVFTSERAGDGQSDL 84 Query: 419 YSIDLNGRNETLINT 433 Y + NG + I T Sbjct: 85 YRVRPNGTDLQPIAT 99 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 66/177 (37%), Gaps = 25/177 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK- 251 + ++ +G+ R +T F P SP+ + + + + + R Sbjct: 458 VYLVAANGSWARSMTNGSTNAGF-PTISPDGRWLVWREFAYSASEDPIPLGLRRMDLTTG 516 Query: 252 -RIGNFRSMILAPRFSSNG-KRALISVQK--------DEAMDIYSVDLQSNATERLTNTL 301 + S P F+ +G R + + + D+ D+ ++ + + +LT Sbjct: 517 DVVALSSSWDNTPMFAPDGSNRIVFTRRTSWPISGPLDDNYDVMTMAVDGSDVRQLTKLA 576 Query: 302 FINISASYSPDSS-------------QIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 + A ++ + +++++++ + M+++GS+ ++Q + Sbjct: 577 CNDAHAVWTHEGKIAWATGMFGFQDEATIYDNNQQPYPFIMQMEADGSNWTVLTQSR 633 >gi|124010592|ref|ZP_01695210.1| putative protease [Microscilla marina ATCC 23134] gi|123982223|gb|EAY23818.1| putative protease [Microscilla marina ATCC 23134] Length = 716 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 109/296 (36%), Gaps = 23/296 (7%) Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 D E+ L+ Q F I H Q + EK ++ Sbjct: 263 ASDENTGEYNLY-TFRNGQKTALTKFDDA-----IKHPFVSANGQRVVFEKNY--QLYIY 314 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 S S + + + NI + T + +P+ +K+A+ + + Sbjct: 315 KVASKQSQKLDIQIYKNNTLKKNITFRTQGFIRAY---DIAPDHKKIAFVARGE-----L 366 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLT 298 ++ D + + ++ + N +R L S ++ + +D ++LT Sbjct: 367 FVSDIKGKYIRQITTKPDDRVVEVHWLKNSQRLLFSQTVGGYLNWFIIDANGQGKEKQLT 426 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSP 356 N S++ D S+ V+ S G+ ++ ++ + +++D+ + + PV+SP Sbjct: 427 ADKQNNRLLSFNSDRSKAVYLS---GRNEVRIINLRSFKNETVAKDELWGFQNDLPVFSP 483 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKD 411 G IA+T + + I + Q L + + +P WSP G+ + F + Sbjct: 484 DGQYIAYTAYRNFERDIFLYHIKKKQLIQLTKTGISEVSPRWSPDGKYIYFVSNRS 539 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + S + D + +D Q A R+T + A SPD + F + + Sbjct: 64 PTLSPDGNTVIFSYEGD--LWKLPLDQQQRAATRITAMQGLETRAKVSPDGQWLAFSASQ 121 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 G +++M G + +++ ++ WS I F+ +++ + G Sbjct: 122 YGNTDVFLMPMKGGEVVQLTFY-DSFDHVESWSWDSQWIYFSSNRYNQYSTYKVAAKGGT 180 Query: 383 ERLLVEDS------NLQAPT 396 + + + + PT Sbjct: 181 PQRVFDHYFHTVHNLFEHPT 200 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 100/268 (37%), Gaps = 36/268 (13%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAY--------ATYDDEDILRVYLMDTRIDRAPKRIG 254 + D + P S N Q+V + + ++ + + + K I Sbjct: 280 QKTALTKFDDAIKHPFVSANGQRVVFEKNYQLYIYKVASKQSQKLDIQIYKNNTLKKNIT 339 Query: 255 -NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI-SASYSPD 312 + I A + + K+ + +++ D++ ++T + + + Sbjct: 340 FRTQGFIRAYDIAPDHKKIAFVARG----ELFVSDIKGKYIRQITTKPDDRVVEVHWLKN 395 Query: 313 SSQIVFESDREGKEQLYVMQSNG-SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 S +++F G +++ +NG +K+++ DK+ + S + + + + Sbjct: 396 SQRLLFSQTVGGYLNWFIIDANGQGKEKQLTADKQNNRLLSFNSDRSKAVYLSGRN---- 451 Query: 372 AIGVMKKDGSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + ++ + + +D P +SP G+ + ++ ++ + LY I + Sbjct: 452 EVRIINLRSFKNETVAKDELWGFQNDLPVFSPDGQYIAYTAYRNFERDIFLYHI----KK 507 Query: 428 ETLIN---------TPAYASDPQWVGFM 446 + LI +P ++ D +++ F+ Sbjct: 508 KQLIQLTKTGISEVSPRWSPDGKYIYFV 535 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 P SP+ V ++ + D+ ++ L RA RI + + + S +G+ Sbjct: 59 YFTSYPTLSPDGNTVIFSY--EGDLWKLPLDQ--QQRAATRITAMQGLETRAKVSPDGQW 114 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 S + D++ + ++ +LT + S+S DS I F S+R + Y + Sbjct: 115 LAFSASQYGNTDVFLMPMKGGEVVQLTFYDSFDHVESWSWDSQWIYFSSNRYNQYSTYKV 174 Query: 332 QSNGSDQKRI 341 + G +R+ Sbjct: 175 AAKGGTPQRV 184 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 3/157 (1%) Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 ++D +G + Q F+ ++ K Y + + +R+ + + + + Sbjct: 412 FIIDANGQGKEKQLTADKQNNRLLSFNSDRSKAVYLS--GRNEVRIINLRSFKNETVAKD 469 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + P FS +G+ + ++ DI+ ++ +LT T +S +SPD Sbjct: 470 ELWGFQNDLPVFSPDGQYIAYTAYRNFERDIFLYHIKKKQLIQLTKTGISEVSPRWSPDG 529 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 I F S+R Y + +NG+ R++ DK + F Sbjct: 530 KYIYFVSNRSRPFYPYGI-TNGTHVYRLALDKFDAEF 565 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 85/231 (36%), Gaps = 8/231 (3%) Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 +G + + ++ + + L V D G IR +T D + E + N Q++ Sbjct: 340 FRTQGFIRAYDIAPDHKKIAFVARGELFVSDIKGKYIRQITTKPDDRVVEVHWLKNSQRL 399 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 + + L +++D K++ + F+S+ +A+ ++ Sbjct: 400 LF-SQTVGGYLNWFIIDANGQGKEKQLTADKQNNRLLSFNSDRSKAVY---LSGRNEVRI 455 Query: 287 VDLQSNATERLTNTL---FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ 343 ++L+S E + F N +SPD I + + R + +++ ++++ Sbjct: 456 INLRSFKNETVAKDELWGFQNDLPVFSPDGQYIAYTAYRNFERDIFLYHIKKKQLIQLTK 515 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 S P WSP G I F F + RL ++ + + Sbjct: 516 TG-ISEVSPRWSPDGKYIYFVSNRSRPFYPYGITNGTHVYRLALDKFDAEF 565 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 92/293 (31%), Gaps = 31/293 (10%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA-NIRYLTPSRDQI 213 AH + T + L + V + L + D + + Sbjct: 49 AHLCAQTTETYFT------SYPTLSPDGNTVIFSYEGDLWKLPLDQQQRAATRITAMQGL 102 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + SP+ Q +A++ + V+LM + + + + S +S + + Sbjct: 103 ETRAKVSPDGQWLAFSASQYGNT-DVFLMPMKGGEVVQ-LTFYDSFDHVESWSWDSQWIY 160 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLF----------INISASYSPDSSQIVFESDRE 323 S + Y V + +R+ + F N ++ F R+ Sbjct: 161 FSSNRYNQYSTYKVAAKGGTPQRVFDHYFHTVHNLFEHPTNGELFFNEGWESKAFI-QRK 219 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPV-WS--PQGDLIAFTKFSG-EKFAIGVMKKD 379 + + + + + K Y W+ Q I F ++ + + + Sbjct: 220 RYKGAFNPDIQSYNPQTNTYKKYTQYKGKDLWATLDQKGNIYFASDENTGEYNLYTFR-N 278 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 G + L D ++ P S +G+ ++F + +LY + + ++ Sbjct: 279 GQKTALTKFDDAIKHPFVSANGQRVVF------EKNYQLYIYKVASKQSQKLD 325 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF 406 P SP G+ + F + G+ + + + ++ + R+ SP G+ L F Sbjct: 59 YFTSYPTLSPDGNTVIF-SYEGDLWKLPLDQQQRAATRITAMQGLETRAKVSPDGQWLAF 117 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLI------NTPAYASDPQWVGF 445 S + G+T L + G L + +++ D QW+ F Sbjct: 118 SASQYGNTDVFLMPMKG-GEVVQLTFYDSFDHVESWSWDSQWIYF 161 >gi|226355054|ref|YP_002784794.1| Dipeptidyl aminopeptidase [Deinococcus deserti VCD115] gi|226317044|gb|ACO45040.1| putative Dipeptidyl aminopeptidase [Deinococcus deserti VCD115] Length = 609 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 16/262 (6%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPR--FSPNQQKVAYATYDDEDILR-VYLMDT 244 + L V D R LT +S + + ++ ++ D + ++ ++ Sbjct: 35 TGRFELYVQDLRSGERRQLTNGEAPKAVRAAFIWSHDDAHLYFSRDENGDERQALFELEV 94 Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTL 301 + + +SM A +G R L++ + M+++ D +A LT Sbjct: 95 ASGKVRALQHDPQSMDYAADVHPDG-RLLVNSTRGGMMNVHIYDPAAPKDSAWTVLTRQP 153 Query: 302 FINISASYSPDSSQIVFESDRE---GKEQLYVMQSNGSDQKRISQDKEAS-YFDPVWSPQ 357 ++A++SPD +++ ++ YV+ ++GS +RI + +E S W P Sbjct: 154 NTTMAAAFSPDGTRLTVTTNESPDLRNTDGYVLNADGSGLRRIFRVREGSRDSVGHWHPD 213 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAP-TWSPSGRSLIFSRKKDGDT 414 G +A + + +G++ D + R L D + P +SP GR L R D Sbjct: 214 GQRVAVSSDASGSGRVGLLTVDTGEVRWLTSENDQTEEMPGRFSPDGRWLSALRNVDSTL 273 Query: 415 GSKLYSIDLNGRNETLINTPAY 436 LY D +E + PA Sbjct: 274 TPVLY--DTGTGHERTLKLPAG 293 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 75/210 (35%), Gaps = 6/210 (2%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +G + +L ++ +R L + + P+ + + +T + +Y Sbjct: 79 RDENGDERQALFELEVASGKVRALQHDPQSMDYAADVHPDGRLLVNSTRGGMMNVHIYDP 138 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD---EAMDIYSVDLQSNATERLT- 298 D A + + +A FS +G R ++ + D Y ++ + R+ Sbjct: 139 AAPKDSAWTVLTRQPNTTMAAAFSPDGTRLTVTTNESPDLRNTDGYVLNADGSGLRRIFR 198 Query: 299 -NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP-VWSP 356 + + PD ++ SD G ++ ++ + + + ++ + + + P +SP Sbjct: 199 VREGSRDSVGHWHPDGQRVAVSSDASGSGRVGLLTVDTGEVRWLTSENDQTEEMPGRFSP 258 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 G ++ + + ER L Sbjct: 259 DGRWLSALRNVDSTLTPVLYDTGTGHERTL 288 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 87/246 (35%), Gaps = 26/246 (10%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF---RSMILAPRFSSNGKRALISV 276 S + +A+ +Y+ D R +++ N +++ A +S + S Sbjct: 22 SNSGNHIAFYADWTGR-FELYVQDLRSGE-RRQLTNGEAPKAVRAAFIWSHDDAHLYFSR 79 Query: 277 QKDE--AMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFESDREGKEQLYVMQS 333 ++ ++ +++ S L + ++ +A PD +V S R G +++ Sbjct: 80 DENGDERQALFELEVASGKVRALQHDPQSMDYAADVHPDGRLLV-NSTRGGMMNVHIYDP 138 Query: 334 N---GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG---EKFAIGVMKKDGSQERLLV 387 S +++ + +SP G + T V+ DGS R + Sbjct: 139 AAPKDSAWTVLTRQPNTTMAA-AFSPDGTRLTVTTNESPDLRNTDGYVLNADGSGLRRIF 197 Query: 388 ---EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID------LNGRNETLINTPA-YA 437 E S W P G+ + S G L ++D L N+ P ++ Sbjct: 198 RVREGSRDSVGHWHPDGQRVAVSSDASGSGRVGLLTVDTGEVRWLTSENDQTEEMPGRFS 257 Query: 438 SDPQWV 443 D +W+ Sbjct: 258 PDGRWL 263 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 11/177 (6%) Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT---LFINISASYSPDSSQIVFESD 321 S++G ++Y DL+S +LTN + + +S D + + F D Sbjct: 21 VSNSGNHIAFYADWTGRFELYVQDLRSGERRQLTNGEAPKAVRAAFIWSHDDAHLYFSRD 80 Query: 322 REG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK- 378 G ++ L+ ++ + + D ++ + P G L+ G + + Sbjct: 81 ENGDERQALFELEVASGKVRALQHDPQSMDYAADVHPDGRLLV-NSTRGGMMNVHIYDPA 139 Query: 379 ---DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD-TGSKLYSIDLNGRNETLI 431 D + L + + A +SP G L + + D + Y ++ +G I Sbjct: 140 APKDSAWTVLTRQPNTTMAAAFSPDGTRLTVTTNESPDLRNTDGYVLNADGSGLRRI 196 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 3/139 (2%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI-LFEPRFSPNQQKVAYATYDDEDILR 238 V+ + + V++ DG+ +R + R+ + P+ Q+VA + D R Sbjct: 170 VTTNESPDLRNTDGYVLNADGSGLRRIFRVREGSRDSVGHWHPDGQRVA-VSSDASGSGR 228 Query: 239 VYLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 V L+ P RFS +G+ D + D + L Sbjct: 229 VGLLTVDTGEVRWLTSENDQTEEMPGRFSPDGRWLSALRNVDSTLTPVLYDTGTGHERTL 288 Query: 298 TNTLFINISASYSPDSSQI 316 I ++ +++ Sbjct: 289 KLPAGIAAGTDFALGGTKL 307 >gi|15600815|ref|NP_232445.1| hypothetical protein VCA0044 [Vibrio cholerae O1 biovar eltor str. N16961] gi|9657426|gb|AAF95958.1| hypothetical protein VC_A0044 [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 714 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NV 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 219 WSPLTGKHTQITTFRGEDRNPVWSA 243 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 98/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ + Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 VWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|321312767|ref|YP_004205054.1| putative acylaminoacyl-peptidase [Bacillus subtilis BSn5] gi|320019041|gb|ADV94027.1| putative acylaminoacyl-peptidase [Bacillus subtilis BSn5] Length = 657 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 49/222 (22%) Query: 259 MILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+++ +G RA + +I+ + ++ + T+ + +SPD Sbjct: 15 SVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPD 74 Query: 313 SSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SDREG QLY+M + G + ++++ D P+WSP G+ I T GE Sbjct: 75 GRTLAFISDREGDAAQLYIMSTEGGEARKLT-DIPYGVSKPLWSPDGESILVTVSLGEGE 133 Query: 372 AIG------------------VMKKDGSQER-------------------LLVEDSNLQA 394 +I K+DG L ++ Sbjct: 134 SIDDREKTEQDSYEPVEVQSLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHKADHGD 193 Query: 395 PTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLIN 432 P +SP G+ L+FS D +Y + L + + Sbjct: 194 PAFSPDGKWLVFSANLTETDDASKPHDVYIMSLESGDLKQVT 235 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 103/317 (32%), Gaps = 72/317 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +R +V V + + G ++ + ++ +PR+SP+ + +A+ + Sbjct: 26 TRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWT--HGEKRSTDPRWSPDGRTLAFISD 83 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------- 277 + D ++Y+M T +++ + + P +S +G+ L++V Sbjct: 84 REGDAAQLYIMSTE-GGEARKLTDIPYGVSKPLWSPDGESILVTVSLGEGESIDDREKTE 142 Query: 278 ----------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + V ++S + LT+ + ++SPD Sbjct: 143 QDSYEPVEVQSLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHKADHGDPAFSPDGKW 202 Query: 316 IVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 +VF + D +Y+M D K+++ + + P G +A Sbjct: 203 LVFSANLTETDDASKPHDVYIMSLESGDLKQVTPHRGSFGSSSFS-PDGRYLALLGNEKE 261 Query: 367 --SGEKFAIGVMKKDGSQERLLVE----------------DSNLQAPTWSPSGRSLIFSR 408 + + + + L E Q P W+ + Sbjct: 262 YKNATLSKAWLYDIEQGRLTCLTEMLDVHLADALIGDSLIGGAEQRPIWTKDSQGFYVIG 321 Query: 409 KKDGDTGSKLYSIDLNG 425 G TG +Y I + G Sbjct: 322 TDQGSTG--IYYISIEG 336 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 49/240 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + +P+++P+ + AY Y + I + PR+S +G Sbjct: 16 VTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPDG 75 Query: 270 KRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------- 321 + ++ A +Y + + +LT+ + +SPD I+ Sbjct: 76 RTLAFISDREGDAAQLYIMSTEGGEARKLTDIPYGVSKPLWSPDGESILVTVSLGEGESI 135 Query: 322 ----------------------REGKE-------QLYVMQSNGSDQKRISQDKEASYFDP 352 R+GK QL ++ + K ++ K A + DP Sbjct: 136 DDREKTEQDSYEPVEVQSLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHK-ADHGDP 194 Query: 353 VWSPQGDLIAFTKF------SGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 +SP G + F+ + + + +M + + + + + ++SP GR L Sbjct: 195 AFSPDGKWLVFSANLTETDDASKPHDVYIMSLESGDLKQVTPHRGSFGSSSFSPDGRYLA 254 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 9/105 (8%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 S DP ++P G A+ K + I + + P WSP Sbjct: 15 SVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPD 74 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 GR+L F ++GD ++LY + G L + P S P W Sbjct: 75 GRTLAFISDREGD-AAQLYIMSTEGGEARKLTDIPYGVSKPLWSP 118 >gi|73670480|ref|YP_306495.1| hypothetical protein Mbar_A3021 [Methanosarcina barkeri str. Fusaro] gi|72397642|gb|AAZ71915.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 499 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 80/183 (43%), Gaps = 2/183 (1%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 S S + L +++ + + + D+ + +K+ Y + +++++ Sbjct: 151 STKSNGSQTGLYLVNLENGTVTPVADDLDKSESWGSWCRLGKKIVYTQKSGDAPSQLWIV 210 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNATERLTNTL 301 + KR+G ++ + + G + + S E D+++++ +LT+T Sbjct: 211 NWD-GSNKKRLGTSENVGMGKDWCPLGLKIIYSANDSKEKPDLWTIEWYGTNQTQLTDTP 269 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + SYSPD +IV+ SD GK ++++ GS + ++ + P WSP G I Sbjct: 270 YGEWDPSYSPDGKRIVYVSDEGGKPEIWLRNIKGSYKVMLTNNIGVIDSTPRWSPDGSKI 329 Query: 362 AFT 364 FT Sbjct: 330 VFT 332 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 96/236 (40%), Gaps = 8/236 (3%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 IL+ + S +++ M +G+ I + +PN ++ +T + Sbjct: 101 HILYTVKRNGSDNLES--YKMKANGSEIERTGIGEGNLSSFSDVNPNGTELL-STKSNGS 157 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV-QKDEAMDIYSVDLQSNAT 294 +YL++ + + GK+ + + D ++ V+ + Sbjct: 158 QTGLYLVNLENGTVTPVADDLDKSESWGSWCRLGKKIVYTQKSGDAPSQLWIVNWDGSNK 217 Query: 295 ERLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 +RL + + + + P +I++ + D + K L+ ++ G++Q +++ D +DP Sbjct: 218 KRLGTSENVGMGKDWCPLGLKIIYSANDSKEKPDLWTIEWYGTNQTQLT-DTPYGEWDPS 276 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFS 407 +SP G I + G K I + GS + +L + P WSP G ++F+ Sbjct: 277 YSPDGKRIVYVSDEGGKPEIWLRNIKGSYKVMLTNNIGVIDSTPRWSPDGSKIVFT 332 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 100/251 (39%), Gaps = 11/251 (4%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSM 259 NI +LT S + LF P ++ + + Y + D L Y M + ++ Sbjct: 78 ENITFLTNSPESELF-PVWTADGNHILYTVKRNGSDNLESYKMKANGSEIERTGIGEGNL 136 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF-INISASYSPDSSQIVF 318 + NG L + +Y V+L++ + + L S+ +IV+ Sbjct: 137 SSFSDVNPNGTELLSTKSNGSQTGLYLVNLENGTVTPVADDLDKSESWGSWCRLGKKIVY 196 Query: 319 ESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-EKFAIGVM 376 QL+++ +GS++KR+ + W P G I ++ EK + + Sbjct: 197 TQKSGDAPSQLWIVNWDGSNKKRLGTSENVG-MGKDWCPLGLKIIYSANDSKEKPDLWTI 255 Query: 377 KKDGSQERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 + G+ + L + + P++SP G+ +++ + G +++ ++ G + ++ Sbjct: 256 EWYGTNQTQLTDTPYGEWDPSYSPDGKRIVYVSDEGGK--PEIWLRNIKGSYKVMLTNNI 313 Query: 436 YASD--PQWVG 444 D P+W Sbjct: 314 GVIDSTPRWSP 324 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 D+ L + S K L ++ G N LT + ++P +SP+ +++ Y + Sbjct: 231 DWCPLGLKIIYSANDSKEKPDLWTIEWYGTNQTQLTDTPYG-EWDPSYSPDGKRIVYVS- 288 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 D+ ++L + + N + PR+S +G + + +V K + + Sbjct: 289 DEGGKPEIWLRNIKGSYKVMLTNNIGVIDSTPRWSPDGSKIVFTVHKMQNI 339 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI++VS+ K + + + G+ LT + I PR+SP+ K+ + + ++ Sbjct: 283 RIVYVSDEGG----KPEIWLRNIKGSYKVMLTNNIGVIDSTPRWSPDGSKIVFTVHKMQN 338 Query: 236 ILR 238 IL Sbjct: 339 ILE 341 >gi|116620656|ref|YP_822812.1| peptidase S9 prolyl oligopeptidase [Candidatus Solibacter usitatus Ellin6076] gi|116223818|gb|ABJ82527.1| peptidase S9, prolyl oligopeptidase active site domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 672 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 96/295 (32%), Gaps = 65/295 (22%) Query: 214 LFEPRFSPNQQKVAYATY-----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + +P+ SP+ + VA+ ++ +++++ P++I + PR+S + Sbjct: 32 IADPQISPDGKWVAFQVQTVDVPGNKKPAQIWIVPLN-GGTPQQITHDGEANQRPRWSPD 90 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------- 321 KR + + I+ +D +++T+ + S D +VF S+ Sbjct: 91 SKRIAYVSDRGGSSQIWMMDPDGGNAKQVTDVVTEADGHVLSGDGKNVVFTSEVFPECGA 150 Query: 322 ----------------------------------REGKEQLYVMQSNGSDQKRISQDKEA 347 + + + V G + ++ Sbjct: 151 DNACNQKLIDAEKASKTKPRIYTELLYRHWTRWQSKRRMHILVAPIAGGPVRDLTPGPRD 210 Query: 348 ------SYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGSQ-ERLLVEDSNLQA 394 D SP G + ++ + + V+ G Q +R+ + + Sbjct: 211 VPPFSLGGDDFDVSPDGQEVCYSMNADAVPAISTNSDLYVVSIAGGQSKRITITPGSDTG 270 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSI----DLNGRNETLI-NTPAYASDPQWVG 444 P +SP G+ + + + G S + + +G+ L + + + W Sbjct: 271 PRYSPDGKYIAWRSQLRGGYESDRFRLMTLERSSGKVNNLTESLDRWVNSFTWAP 325 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 67/304 (22%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 + V + ++ +G + +T + PR+SP+ +++AY + D +++ Sbjct: 50 TVDVPGNKKPAQIWIVPLNGGTPQQITHDGE-ANQRPRWSPDSKRIAYVS-DRGGSSQIW 107 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV------------------------ 276 +MD K++ + + S +GK + + Sbjct: 108 MMDPD-GGNAKQVTDVVTEADGHVLSGDGKNVVFTSEVFPECGADNACNQKLIDAEKASK 166 Query: 277 -----------------QKDEAMDIYSVDLQSNATERLTNTLFINISAS--------YSP 311 Q M I + LT ++ SP Sbjct: 167 TKPRIYTELLYRHWTRWQSKRRMHILVAPIAGGPVRDLTPGP-RDVPPFSLGGDDFDVSP 225 Query: 312 DSSQIVFESDREGKEQL------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 D ++ + + + + YV+ G KRI+ S P +SP G IA+ Sbjct: 226 DGQEVCYSMNADAVPAISTNSDLYVVSIAGGQSKRIT-ITPGSDTGPRYSPDGKYIAWRS 284 Query: 366 F-----SGEKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 ++F + +++ + L E D + + TW+P SL F+ G ++ Sbjct: 285 QLRGGYESDRFRLMTLERSSGKVNNLTESLDRWVNSFTWAPDSASLFFTTTDRGRQAIQV 344 Query: 419 YSID 422 + Sbjct: 345 IPLS 348 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 108/310 (34%), Gaps = 64/310 (20%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT--- 230 + RI +VS+ S + + +MD DG N + +T + S + + V + + Sbjct: 91 SKRIAYVSDRGGS----SQIWMMDPDGGNAKQVTDVVTEADGH-VLSGDGKNVVFTSEVF 145 Query: 231 -----------------YDDEDILRVYLMDT-------------RIDRAPKRIGNFRSMI 260 + R+Y I AP G R + Sbjct: 146 PECGADNACNQKLIDAEKASKTKPRIYTELLYRHWTRWQSKRRMHILVAPIAGGPVRDLT 205 Query: 261 LAPR-------------FSSNGKRALISVQKD------EAMDIYSVDLQSNATERLTNTL 301 PR S +G+ S+ D D+Y V + ++R+T T Sbjct: 206 PGPRDVPPFSLGGDDFDVSPDGQEVCYSMNADAVPAISTNSDLYVVSIAGGQSKRITITP 265 Query: 302 FINISASYSPDSSQIVFESD-REG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + YSPD I + S R G + +L ++ + +++ + W+P Sbjct: 266 GSDTGPRYSPDGKYIAWRSQLRGGYESDRFRLMTLERSSGKVNNLTESLDRWVNSFTWAP 325 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTG 415 + FT + AI V+ G ++ N L + +GR+++++ ++ G Sbjct: 326 DSASLFFTTTDRGRQAIQVIPLSGGAIKIAASGDNELDDMQLTRNGRTMVYT-QQSGVAP 384 Query: 416 SKLYSIDLNG 425 ++Y G Sbjct: 385 VEIYRAASTG 394 >gi|218128507|ref|ZP_03457311.1| hypothetical protein BACEGG_00077 [Bacteroides eggerthii DSM 20697] gi|217989398|gb|EEC55711.1| hypothetical protein BACEGG_00077 [Bacteroides eggerthii DSM 20697] Length = 1086 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 38/222 (17%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + F S AP + S +G + + D IY+V + +LT + Sbjct: 13 LAAFTSAQDAPLWLRHCAISPDGTTIAFTYKGD----IYTVPVDGGRAMQLTTNPAHDTE 68 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD +I F SDR G +Y++ G + +R++ S +S G I F+ Sbjct: 69 PVWSPDGKRIAFASDRMGSMDVYIVSKEGGEPRRLTT-HSGSETPVAFSDAG-HILFSAD 126 Query: 367 -----------SGEKFA-IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL---------I 405 S +F + + +G + +L ++ + + G L Sbjct: 127 IMPSAETVLFPSNGQFRQVYKVSVEGGRP-VLYSPMPMECISINKEGTVLYQDKKGYEDY 185 Query: 406 FSRKKDGDTGSKLYSIDLNGRN---ETLINTPAYASDPQWVG 444 + + + ++ G L +P W Sbjct: 186 WRKHQVSPIARDIWMY-APGEKPAYRQLTTFGGEDREPVWAP 226 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 31/221 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V + R ++ + P +S +GKR + Sbjct: 30 AISPDGTTIAFTY--KGDIYTVPVDGGRAM----QLTTNPAHDTEPVWSPDGKRIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + +MD+Y V + RLT ++S D+ I+F +D + + SNG Sbjct: 84 RMGSMDVYIVSKEGGEPRRLTTHSGSETPVAFS-DAGHILFSADIMPSAETVLFPSNG-Q 141 Query: 338 QKRISQDKEASYFDPVWSP----------QGDLIAFTKFSGEKF-----------AIGVM 376 +++ + ++SP +G ++ K E + I + Sbjct: 142 FRQVYKVSVEGGRPVLYSPMPMECISINKEGTVLYQDKKGYEDYWRKHQVSPIARDIWMY 201 Query: 377 KKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 +L + P W+P G+S + +++G Sbjct: 202 APGEKPAYRQLTTFGGEDREPVWAPDGKSFYYLSEENGTFN 242 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 111/302 (36%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN G + V +R+L+ + D L + + Sbjct: 231 FYYLSEENGTFN------VYRRTPGAASAT-QVTHHTKQPVRFLSIAADGRLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + + ++ + D+ R S NGK ++ D Sbjct: 281 GEIYTLVPGGEPRKVNISIVSDKSDKDLIRQIKSSGATEM-ALSPNGKEVAFVLRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y + T+++TNT ++PD +V+ S+R G QLY D+K + Sbjct: 337 -VYVTSVDYKTTKQVTNTPCQERGVDFAPDGRSLVYASERGGLWQLYTSAIVRKDEKLFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE---- 388 + EA+ F P +SP G +AF + AI V+ R +++ Sbjct: 396 YATELKEERLTNSEAASFQPQYSPDGKEVAFLENRA---AIRVINLKTKAVRTVMDAKYQ 452 Query: 389 ---DSNLQAPTWSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 Q WSP + ++ F G + ++ +G+ E + T + +D + Sbjct: 453 YSYSDGDQWFRWSPDSKWILSDFI-GIGGWNNKDVVLLNADGKGEMVNLTESGYTDGNAK 511 Query: 442 WV 443 WV Sbjct: 512 WV 513 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 30/250 (12%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V G + + D ++ + + E SPN ++VA+ D VY+ Sbjct: 287 VPGGEPRKVNISIVSDKSDKDLIRQIKSSGATEMALSPNGKEVAFVLRGD-----VYVTS 341 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN----------- 292 + K++ N F+ +G+ + + ++ +Y+ + Sbjct: 342 VDY-KTTKQVTNTPCQERGVDFAPDGRSLVYASERGGLWQLYTSAIVRKDEKLFTYATEL 400 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-- 350 ERLTN+ + YSPD ++ F +R + V+ + + K + Sbjct: 401 KEERLTNSEAASFQPQYSPDGKEVAFLENRA---AIRVINLKTKAVRTVMDAKYQYSYSD 457 Query: 351 ---DPVWSPQGDLIA--FTKFSG-EKFAIGVMKKDGSQERL-LVEDSNLQAPT-WSPSGR 402 WSP I F G + ++ DG E + L E W G+ Sbjct: 458 GDQWFRWSPDSKWILSDFIGIGGWNNKDVVLLNADGKGEMVNLTESGYTDGNAKWVLGGK 517 Query: 403 SLIFSRKKDG 412 ++I++ + G Sbjct: 518 AMIWTSDRAG 527 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 90/247 (36%), Gaps = 31/247 (12%) Query: 222 NQQKVAYATYDDEDILR-VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + + + I R +++ A +++ F P ++ +GK +++ Sbjct: 180 KGYEDYWRKHQVSPIARDIWMYAPGEKPAYRQLTTFGGEDREPVWAPDGKSFYYLSEENG 239 Query: 281 AMDIYSVDLQSNATERLTNTL---------FINISASYSPDSSQIVFESDREGKEQ---L 328 ++Y + + ++T+ + Y D ++ G+ + + Sbjct: 240 TFNVYRRTPGAASATQVTHHTKQPVRFLSIAADGRLCYGFDGE--IYTLVPGGEPRKVNI 297 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 ++ + SD+ I Q K + + SP G +AF + V D + + Sbjct: 298 SIVS-DKSDKDLIRQIKSSGATEMALSPNGKEVAFVLRGD----VYVTSVDYKTTKQVTN 352 Query: 389 DS-NLQAPTWSPSGRSLIFSRKKDG----------DTGSKLYSIDLNGRNETLINTPAYA 437 + ++P GRSL+++ ++ G KL++ + E L N+ A + Sbjct: 353 TPCQERGVDFAPDGRSLVYASERGGLWQLYTSAIVRKDEKLFTYATELKEERLTNSEAAS 412 Query: 438 SDPQWVG 444 PQ+ Sbjct: 413 FQPQYSP 419 >gi|115452667|ref|NP_001049934.1| Os03g0314500 [Oryza sativa Japonica Group] gi|108707813|gb|ABF95608.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza sativa Japonica Group] gi|113548405|dbj|BAF11848.1| Os03g0314500 [Oryza sativa Japonica Group] gi|125586045|gb|EAZ26709.1| hypothetical protein OsJ_10615 [Oryza sativa Japonica Group] Length = 730 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 108/294 (36%), Gaps = 69/294 (23%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI- 274 P FS + ++A+ + + + R+ + + +P ++S + Sbjct: 396 FPTFSKDGSQLAFVDNEFKSVWLADSQGMRVVFK----TDGPDSVFSPLWNSKKDILYVC 451 Query: 275 ---SVQKDEAMDIYSV-DLQSN--ATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 S + E ++I+S+ ++ + + +LT F N S +PD ++ VF S R+G Sbjct: 452 MGPSFKASETLEIHSIHNVSTGDRKSRQLTFGGFNNAFPSTNPDGTKFVFRSTRDGGAKY 511 Query: 326 -EQLYVM-QSNGSD--------QKRISQDKEASYFDPVWSPQGDLIAFTKFSG------- 368 + LY+M ++ + R++ E + WSP G I F+ Sbjct: 512 SKNLYIMEDADAGEGEDGSQSTVTRMT-AGEWTDTHCQWSPNGKWIVFSSNRDRPADAPE 570 Query: 369 -------EKFAIGVMK-KDGSQERLLVED----SNLQAPTWSPSGRSLIFSRK------- 409 FA+ +M S R++ ++ P +SP GRS+ + Sbjct: 571 RDHGLDPGYFAVYLMDVASRSVVRVIRSGYDVAGHVNHPVFSPDGRSIAVTSDLAAVTAD 630 Query: 410 --------KDGDTGSKLYSIDLN----GRNE------TLINTPAYASDPQWVGF 445 ++++D++ RNE + ++ S P W F Sbjct: 631 PMSLPLFLHSVRPYGDIFTVDIDPDDMARNEDVEGFVRVTHSRYENSTPAWTVF 684 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 16/124 (12%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQ 327 ++ Y +L++ TERLT +IS S SP ++ S + Sbjct: 161 RRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTN 220 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----FAIGVMKKDGSQE 383 +YVM Q R + + P W + D+I F + G+ + + + Sbjct: 221 IYVMSLENPSQDRERVIENGGW--PSWGSE-DVIFFHRKDGDGENSCWGVFRHTLSTGET 277 Query: 384 RLLV 387 + Sbjct: 278 VRVT 281 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 13/89 (14%) Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-------GSK 417 + S A + G ERL + +P+ SPSG+ + + + + Sbjct: 161 RRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTN 220 Query: 418 LYSIDLNG---RNETLINTPAYASDPQWV 443 +Y + L E +I + P W Sbjct: 221 IYVMSLENPSQDRERVIENGGW---PSWG 246 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 44/150 (29%), Gaps = 19/150 (12%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------KDEAM 282 + V +R+ + ++P S +GK+ ++ K+ Sbjct: 160 ERRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNT 219 Query: 283 DIYSVDLQ--SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLY---VMQSNGSD 337 +IY + L+ S ER+ S+ + D +G+ + + + Sbjct: 220 NIYVMSLENPSQDRERVIENGGW---PSWGSEDVIFFHRKDGDGENSCWGVFRHTLSTGE 276 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 R++ S +A Sbjct: 277 TVRVTPAAFDSVTPAAI--DETRVAVAAIR 304 >gi|221311165|ref|ZP_03593012.1| hypothetical protein Bsubs1_17491 [Bacillus subtilis subsp. subtilis str. 168] gi|221315492|ref|ZP_03597297.1| hypothetical protein BsubsN3_17407 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320407|ref|ZP_03601701.1| hypothetical protein BsubsJ_17370 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324691|ref|ZP_03605985.1| hypothetical protein BsubsS_17521 [Bacillus subtilis subsp. subtilis str. SMY] gi|255767740|ref|NP_391103.2| acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis str. 168] gi|251757426|sp|P39839|YUXL_BACSU RecName: Full=Uncharacterized peptidase yuxL gi|225185368|emb|CAB15213.2| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis str. 168] Length = 657 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 49/222 (22%) Query: 259 MILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+++ +G RA + +I+ + ++ + T+ + +SPD Sbjct: 15 SVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPD 74 Query: 313 SSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SDREG QLY+M + G + ++++ D P+WSP G+ I T GE Sbjct: 75 GRTLAFISDREGDAAQLYIMSTEGGEARKLT-DIPYGVSKPLWSPDGESILVTVSLGEGE 133 Query: 372 AIG------------------VMKKDGSQER-------------------LLVEDSNLQA 394 +I K+DG L ++ Sbjct: 134 SIDDREKTEQDSYEPVEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHKADHGD 193 Query: 395 PTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLIN 432 P +SP G+ L+FS D +Y + L + + Sbjct: 194 PAFSPDGKWLVFSANLTETDDASKPHDVYIMSLESGDLKQVT 235 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 103/317 (32%), Gaps = 72/317 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +R +V V + + G ++ + ++ +PR+SP+ + +A+ + Sbjct: 26 TRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWT--HGEKRSTDPRWSPDGRTLAFISD 83 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------- 277 + D ++Y+M T +++ + + P +S +G+ L++V Sbjct: 84 REGDAAQLYIMSTE-GGEARKLTDIPYGVSKPLWSPDGESILVTVSLGEGESIDDREKTE 142 Query: 278 ----------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + V ++S + LT+ + ++SPD Sbjct: 143 QDSYEPVEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHKADHGDPAFSPDGKW 202 Query: 316 IVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 +VF + D +Y+M D K+++ + + P G +A Sbjct: 203 LVFSANLTETDDASKPHDVYIMSLESGDLKQVTPHRGSFGSSSFS-PDGRYLALLGNEKE 261 Query: 367 --SGEKFAIGVMKKDGSQERLLVE----------------DSNLQAPTWSPSGRSLIFSR 408 + + + + L E Q P W+ + Sbjct: 262 YKNATLSKAWLYDIEQGRLTCLTEMLDVHLADALIGDSLIGGAEQRPIWTKDSQGFYVIG 321 Query: 409 KKDGDTGSKLYSIDLNG 425 G TG +Y I + G Sbjct: 322 TDQGSTG--IYYISIEG 336 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 49/240 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + +P+++P+ + AY Y + I + PR+S +G Sbjct: 16 VTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPDG 75 Query: 270 KRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------- 321 + ++ A +Y + + +LT+ + +SPD I+ Sbjct: 76 RTLAFISDREGDAAQLYIMSTEGGEARKLTDIPYGVSKPLWSPDGESILVTVSLGEGESI 135 Query: 322 ----------------------REGKE-------QLYVMQSNGSDQKRISQDKEASYFDP 352 R+GK QL ++ + K ++ K A + DP Sbjct: 136 DDREKTEQDSYEPVEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHK-ADHGDP 194 Query: 353 VWSPQGDLIAFTKF------SGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 +SP G + F+ + + + +M + + + + + ++SP GR L Sbjct: 195 AFSPDGKWLVFSANLTETDDASKPHDVYIMSLESGDLKQVTPHRGSFGSSSFSPDGRYLA 254 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 9/105 (8%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 S DP ++P G A+ K + I + + P WSP Sbjct: 15 SVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPD 74 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 GR+L F ++GD ++LY + G L + P S P W Sbjct: 75 GRTLAFISDREGD-AAQLYIMSTEGGEARKLTDIPYGVSKPLWSP 118 >gi|312889308|ref|ZP_07748862.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] gi|311298185|gb|EFQ75300.1| amidohydrolase [Mucilaginibacter paludis DSM 18603] Length = 1075 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 34/210 (16%) Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + S NGK L ++ D IY + + + ++T + +N S +SPD Sbjct: 55 TTSEGSNMDVDISPNGKLILFTLLGD----IYKLPITGGSATQITRGMAMNCSPVWSPDG 110 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDK---EASYFDPVWSPQGDLIAFTKFSGEK 370 +I + SD G L++M + G ++ +++ K A + P W+P G ++ + Sbjct: 111 KKIAYISDESGGYGLHIMDTTGKSKRLLTKAKLPLYARFNAPKWTPDGLAVSVDQM---- 166 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPT---WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 V G +ERL DSN+ + +S G +F D D I N N Sbjct: 167 ----VYPLIGGEERLP--DSNMPVDSFIGFSSDG---LFMYYSDFDLNGNTIIIKYNRIN 217 Query: 428 --ETLINTPAY---------ASDPQWVGFM 446 +T+I T + + D +W+ ++ Sbjct: 218 SAKTIIYTARHKQDFSNVRVSPDGRWLTYI 247 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 25/244 (10%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM 259 G I + T + + SPN + + + D +Y + + +I +M Sbjct: 49 GKTISFTTSEGSNMDVD--ISPNGKLILFTLLGD-----IYKLPI-TGGSATQITRGMAM 100 Query: 260 ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL----FINISASYSPDSSQ 315 +P +S +GK+ + ++ +D + LT + ++PD Sbjct: 101 NCSPVWSPDGKKIAYISDESGGYGLHIMDTTGKSKRLLTKAKLPLYARFNAPKWTPDG-- 158 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--SGEKFAI 373 + D+ + ++R+ +S G + ++ F +G I Sbjct: 159 LAVSVDQMVYPLI-------GGEERLPDSNMPVDSFIGFSSDGLFMYYSDFDLNGNTIII 211 Query: 374 GVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 + + ++ + + SP GR L + +K L D++ + E L+ Sbjct: 212 KYNRINSAKTIIYTARHKQDFSNVRVSPDGRWLTYIAEKLQRPTDSLMIYDISNKKERLL 271 Query: 432 NTPA 435 + Sbjct: 272 ASLG 275 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 27/181 (14%) Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ 338 D S+ + T T + N+ SP+ I+F +Y + G Sbjct: 36 DPIAKFKSLPMGVGKTISFTTSEGSNMDVDISPNGKLILFTL----LGDIYKLPITGGSA 91 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-----SNLQ 393 +I++ + PVWSP G IA+ + + +M G +RLL + + Sbjct: 92 TQITRGMAMNC-SPVWSPDGKKIAYISDESGGYGLHIMDTTGKSKRLLTKAKLPLYARFN 150 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-------AYASDPQWVGFM 446 AP W+P G L S + L G E L ++ ++SD ++ + Sbjct: 151 APKWTPDG--LAVSVDQ--------MVYPLIGGEERLPDSNMPVDSFIGFSSDGLFMYYS 200 Query: 447 D 447 D Sbjct: 201 D 201 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 89/314 (28%), Gaps = 46/314 (14%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 +T K +R + + V G R L S + FS + Sbjct: 138 LTKAKLPLYARFNAPKWTPDGLAVSVDQMVYPLIGGEER-LPDSNMPVDSFIGFSSDGLF 196 Query: 226 VAYATYD-DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM-- 282 + Y+ +D + + + + + + R S +G+ +K + Sbjct: 197 MYYSDFDLNGNTIIIKYNRINSAKTIIYTARHKQDFSNVRVSPDGRWLTYIAEKLQRPTD 256 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDS---SQIVFESDR-----EGKEQLYVMQSN 334 + D+ SN ERL +L I +SP F SD ++ + Sbjct: 257 SLMIYDI-SNKKERLLASLGI-----FSPGGLRHQHYSFSSDSKKLLIGYGGKIREISIE 310 Query: 335 GSDQKRISQDKEASY-----------------------FDPVWSPQGDLIAFTKFSGEKF 371 +QK I ++ D SP G + F+ Sbjct: 311 SGEQKVIPFSANVNFDLVGEKIYNTHRLLHDSLKVNYIRDARRSPDGSTLIFSALE---- 366 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 I M R LV Q PT+S G+ + + D G G + Sbjct: 367 HIYTMSYPHGIPRTLVNQDQAQFHPTFSEDGKWVAYVTWSDNKGGQVWIVSSKGGNPVQI 426 Query: 431 INTPAYASDPQWVG 444 S P + Sbjct: 427 TKISGQYSSPCFSP 440 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE--SDRE 323 S +G + S IY++ L N ++S D + + SD + Sbjct: 354 SPDGSTLIFSA----LEHIYTMSYPHGIPRTLVNQDQAQFHPTFSEDGKWVAYVTWSDNK 409 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---------FSGEKFAIG 374 G Q++++ S G + +I++ Y P +SP G + F K GE + Sbjct: 410 GG-QVWIVSSKGGNPVQITKIS-GQYSSPCFSPDGKYLIFVKGEPHLGGRETPGENGKLI 467 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK--DGDTGSKLYSIDL 423 + L + S P +S G+S+I+ ++ + SKL DL Sbjct: 468 RLSLKDKHCEQLADSISLYNNPVFSFDGKSVIYKPRQIDNSSVESKLVVKDL 519 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 102/287 (35%), Gaps = 46/287 (16%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + M R L +DQ F P FS + + VAY T+ D +V+++ ++ P + Sbjct: 368 IYTMSYPHGIPRTLVN-QDQAQFHPTFSEDGKWVAYVTWSDNKGGQVWIVSSK-GGNPVQ 425 Query: 253 IGNFRSMILAPRFSSNGKRALIS---------VQKDEAMDIYSVDLQSNATERLTNTLFI 303 I +P FS +GK + E + + L+ E+L +++ + Sbjct: 426 ITKISGQYSSPCFSPDGKYLIFVKGEPHLGGRETPGENGKLIRLSLKDKHCEQLADSISL 485 Query: 304 NISASYSPDSSQIVF----ESDREGKEQLYVMQS----NGSDQKRISQDKEASYFDPVWS 355 + +S D +++ + + +L V I ++ + S Sbjct: 486 YNNPVFSFDGKSVIYKPRQIDNSSVESKLVVKDLLTHKTSDFAVGIYDNESIKPLKSIPS 545 Query: 356 PQGDLIAFTKFSGEKFAIGVM-KKDGSQERLLVEDSNL----------QAPTWSPSGRSL 404 P I + K ++ ++ ++++ P W G+ L Sbjct: 546 PDEHYIVYLKNE----SLYLVPNLKLGSPQVIINSEMNLPIIRFAKSGFDPAWEDHGKKL 601 Query: 405 IFSRKKDGDTGSKLYSID----LNGRNETLINTPAYASDPQWVGFMD 447 +S G+K ++ID ++ L P+ D Q F+D Sbjct: 602 SWSY------GNKYFNIDPQKIIDAATSLLNANPSAKPDGQQ--FLD 640 >gi|240172096|ref|ZP_04750755.1| WD-40-like beta propeller repeat-containing protein [Mycobacterium kansasii ATCC 12478] Length = 339 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 106/312 (33%), Gaps = 40/312 (12%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E G + I++ S+ NSL +M+ DG+ R L P D FSP+ K+A Sbjct: 28 AESGPGDLVIVYTSQV----AQVNSLHIMNADGSGERVLRP-PDPPAESAVFSPDGHKIA 82 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIG--NFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y + K + + + +A FS +GK IY Sbjct: 83 YIAGKPAQVFVTDSDLKSARPLTKAVAAESHINESVALAFSPDGKTVAYVESATGGSSIY 142 Query: 286 SVDLQSNATERLTNTLFINISA--------SYSPD--------------SSQIVFESDRE 323 VD +L + + ++PD ++VF + + Sbjct: 143 VVDATGGEPRQLMAPFGASEAPVSVPPLRVVFTPDSRAVVYDRLAKADFGQRLVFATIAD 202 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPV---WSPQGDLIAF-TKFSGEKFAIGVMKKD 379 + + + + +E P +S G I + S + A+ V + Sbjct: 203 VVQGDKTDELTLPVPEGVIATREDFRGVPAQLGYSRDGKKIVYQLSVSRGRNALFVADAN 262 Query: 380 GSQERLLVEDSNLQA----PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP- 434 + R L + + +A PT+SP G + ++ ++ ++ +G ++ P Sbjct: 263 FTNPRKLADLKDPRAEWTLPTFSPDGTQIAYTDTLFDVGAQAIFVVNADGSGVRQVSKPQ 322 Query: 435 --AYASDPQWVG 444 Y + P W Sbjct: 323 RGDYHTSPSWGY 334 >gi|257061597|ref|YP_003139485.1| pentapeptide repeat protein [Cyanothece sp. PCC 8802] gi|256591763|gb|ACV02650.1| pentapeptide repeat protein [Cyanothece sp. PCC 8802] Length = 1443 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 89/267 (33%), Gaps = 21/267 (7%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S+++ SG ++ + D N R D + +S + Q +A +YD + Sbjct: 1090 SQTLASGSEDKTIKLWDVSTGNCRLTLTGHDASVSSLAWSGDSQTLASGSYDH----TIK 1145 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTN 299 L D + + + +S + + S +D+ + ++ D+ + LT Sbjct: 1146 LWDVSTGLCRLTLTGHHGSVYSVAWSGDSQTLA-SGSEDKTIKLW--DVSTGNCRLTLTG 1202 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 S ++S DS + G + + + + + + + WS Sbjct: 1203 HHGWVSSVAWSGDSQTLA----SGGDDTIKLWDVSTGNCRLTLTGHHGWVYSVAWSGDSQ 1258 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSK 417 +A SG I + RL + + + WS ++L D K Sbjct: 1259 TLA----SGGDDTIKLWDVSTGNCRLTLTGHDDLVCSVAWSRDSQTLA---SGSSDKTIK 1311 Query: 418 LYSIDLNGRNETLINTPAYASDPQWVG 444 L+ + TL A S W G Sbjct: 1312 LWDVSTGECRLTLTGHDASVSSVAWSG 1338 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 99/327 (30%), Gaps = 44/327 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G +LWDV + S +A GD Sbjct: 1130 GDSQTLASGSYDHTIKLWDVSTG--LCRLTLTGHHGSVYSVA-------------WSGD- 1173 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 S+++ SG ++ + D N R + +S + Q +A Sbjct: 1174 -------SQTLASGSEDKTIKLWDVSTGNCRLTLTGHHGWVSSVAWSGDSQTLA-----S 1221 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + L D + + + +S + + D+ + ++ D+ + Sbjct: 1222 GGDDTIKLWDVSTGNCRLTLTGHHGWVYSVAWSGDSQTLA--SGGDDTIKLW--DVSTGN 1277 Query: 294 TE-RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 LT + S ++S DS + S + + + + + + +AS Sbjct: 1278 CRLTLTGHDDLVCSVAWSRDSQTLASGSS---DKTIKLWDVSTGECRLTLTGHDASVSSV 1334 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKK 410 WS +A I + + RL + + + WS ++L S + Sbjct: 1335 AWSGDSQTLASGSSDKT---IKLWDVSTGECRLTLTGHDDLVWSVAWSRDSQTLA-SCSR 1390 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYA 437 DG KL+ + +T N P + Sbjct: 1391 DGT--IKLWDVQTGKCLQTFDNHPYWG 1415 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 102/334 (30%), Gaps = 44/334 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G + V R+WD K+++ + H S GD Sbjct: 838 GQWLATGDRQGVV--RVWDAVTGKEVLTCR-----------GHHYSVWSV----AWSGD- 879 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 S+++ S ++ + D N R + +S + Q +A +YD Sbjct: 880 -------SQTLASSSDDKTIKLWDVSTGNCRLTLTGHHYSVSSVAWSGDSQALASCSYDK 932 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + L D + + + + ++ N + S D + ++ DL + Sbjct: 933 ----TIKLWDVSTGNCRLTLTGHDAWVSSVAWNGNSQTLA-SGSGDNTIKLW--DLSTGE 985 Query: 294 TE-RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 LT S ++S DS + S + + + + + Sbjct: 986 CHLTLTGHDDSVSSVAWSGDSQTLASCSY---DKTIKLWDVSTGLCRLTLTGHHGWVSSV 1042 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKK 410 WS +A I + Q RL + + + WS ++L Sbjct: 1043 AWSGDSQTLASGSSDKT---IKLWDVQTRQCRLTLTGHDDWVSSVAWSGDSQTLA---SG 1096 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 D KL+ + TL A S W G Sbjct: 1097 SEDKTIKLWDVSTGNCRLTLTGHDASVSSLAWSG 1130 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 20/256 (7%) Query: 193 LCVMDRDGANI-RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +D GAN+ + + FSP+ Q +A T D + ++RV+ T + Sbjct: 807 LHQVDFTGANLTETRFANLLGGVLTLAFSPDGQWLA--TGDRQGVVRVWDAVTGKEVLTC 864 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-RLTNTLFINISASYS 310 R + + +S + + S D+ + ++ D+ + LT + S ++S Sbjct: 865 R--GHHYSVWSVAWSGDSQTLA-SSSDDKTIKLW--DVSTGNCRLTLTGHHYSVSSVAWS 919 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 DS + S + + + + + + +A W+ +A Sbjct: 920 GDSQALASCSY---DKTIKLWDVSTGNCRLTLTGHDAWVSSVAWNGNSQTLASGSGDNT- 975 Query: 371 FAIGVMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + + L D ++ + WS ++L D KL+ + Sbjct: 976 --IKLWDLSTGECHLTLTGHDDSVSSVAWSGDSQTLASCSY---DKTIKLWDVSTGLCRL 1030 Query: 429 TLINTPAYASDPQWVG 444 TL + S W G Sbjct: 1031 TLTGHHGWVSSVAWSG 1046 >gi|73670327|ref|YP_306342.1| WD-40 repeat-containing protein [Methanosarcina barkeri str. Fusaro] gi|72397489|gb|AAZ71762.1| WD-40 repeat-containing protein [Methanosarcina barkeri str. Fusaro] Length = 1229 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 109/323 (33%), Gaps = 51/323 (15%) Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLWD KQI +Y + G + V + Sbjct: 898 RLWDTDTGKQIFVLNHNGP--------------VYNVVFSPGG----------KYVATAS 933 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 N+ + + D ++ + ++ FSP+ + +A A+ DD L DT + Sbjct: 934 KDNTARLWNADTGKQIFVLN-HNGRVYNAVFSPDGKYIATASGDD----TARLWDTDTGK 988 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + N + FS +GK + D ++ + + + +SA Sbjct: 989 QIFVL-NHSGWVYDVVFSPDGKYIA-TASFDNTARLW--NAATGEQIFVLRHSDKVLSAV 1044 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD + S+ + ++ Q + + V+SP G IA Sbjct: 1045 FSPDGKYVATASN---DNTARLWDADTGKQIFVLNHGSW-VNNVVFSPDGKYIATASNDN 1100 Query: 369 EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + D ++ +L + +S G+ + + D ++L++ D G+ Sbjct: 1101 TA---RLWDADTGKQIFVLNHSGWVNNVVFSRDGKYIATASY---DKTARLWNAD-TGKQ 1153 Query: 428 ETLINTPA------YASDPQWVG 444 ++N ++SD ++V Sbjct: 1154 VFVLNHNGPVYKVVFSSDGKYVA 1176 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 117/341 (34%), Gaps = 37/341 (10%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASW---RK--IAHTISDD----IYQ 164 G+ + RLWD I+ S + R T SDD ++ Sbjct: 806 GKYVATASGDNTA--RLWDTDTGNPILIMNHNGSVNNVVFSRDGKYIATASDDKTAGLWD 863 Query: 165 SITGEKGDFNSRILFVSES-----VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 E + N + V S V + N+ + D D ++ + ++ F Sbjct: 864 IAATEVLNHNGPVYGVVFSRDEKYVATASGDNTARLWDTDTGKQIFVLN-HNGPVYNVVF 922 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP + VA A+ D + R++ DT + N + FS +GK + D Sbjct: 923 SPGGKYVATASKD--NTARLWNADTGKQIF---VLNHNGRVYNAVFSPDGKYIA-TASGD 976 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 + ++ D + + N +SPD I S + + +Q Sbjct: 977 DTARLW--DTDTGKQIFVLNHSGWVYDVVFSPDGKYIATASF---DNTARLWNAATGEQI 1031 Query: 340 RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWS 398 + + + V+SP G +A + D ++ +L S + +S Sbjct: 1032 FVLRHSD-KVLSAVFSPDGKYVATASNDNTA---RLWDADTGKQIFVLNHGSWVNNVVFS 1087 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 P G+ + + D ++L+ D G+ ++N + ++ Sbjct: 1088 PDGKYIATASN---DNTARLWDAD-TGKQIFVLNHSGWVNN 1124 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 68/437 (15%), Positives = 137/437 (31%), Gaps = 81/437 (18%) Query: 73 LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNS-LGAQVLV------TGRVIKEGKDRLR 125 L S N + + + + W++ G Q+ V V+ + Sbjct: 586 LNHSGWVNNVVFSPDGKYAATASNDNTARLWDADTGKQIFVLNHGDWVNNVVFSPDGKYV 645 Query: 126 VEF------RLWDVKDRKQIIGKKFFSSPA------SWRKIAHTISDDIYQ--------- 164 RLWD KQI S + IA +D+ + Sbjct: 646 ATASNDNTARLWDADTGKQIFVLNHNGSVNNAVFSPDGKYIATASNDNTARLWNADTGKQ 705 Query: 165 -SITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + G N+ + + + + N+ + D D ++ + FSP+ Sbjct: 706 IFVLNHNGSVNNAVFSPDGKYIATASNDNTAGLWDADTGKQIFVLNHGSWVNNV-VFSPD 764 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + +A A++D+ L D + + N S + FS +GK + D Sbjct: 765 GKYIATASFDN----TARLWDIATGNSIFAL-NHDSWVYDVMFSPDGKYVA-TASGDNTA 818 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD--REGKEQL------------ 328 ++ D + + N + +S D I SD G + Sbjct: 819 RLW--DTDTGNPILIMNHNGSVNNVVFSRDGKYIATASDDKTAGLWDIAATEVLNHNGPV 876 Query: 329 ----------YVMQSNGSDQKRISQ----------DKEASYFDPVWSPQGDLIAFTKFSG 368 YV ++G + R+ + ++ V+SP G +A Sbjct: 877 YGVVFSRDEKYVATASGDNTARLWDTDTGKQIFVLNHNGPVYNVVFSPGGKYVATASKDN 936 Query: 369 EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + D ++ +L + + +SP G+ + + GD ++L+ D G+ Sbjct: 937 TA---RLWNADTGKQIFVLNHNGRVYNAVFSPDGKYIATAS---GDDTARLWDTD-TGKQ 989 Query: 428 ETLINTPAYASDPQWVG 444 ++N + D + Sbjct: 990 IFVLNHSGWVYDVVFSP 1006 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 21/260 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + N+ + D D ++ + FSP+ + A A+ D + R++ DT Sbjct: 565 TASNDNTARLWDADTGKQIFVLNHSGWVNNV-VFSPDGKYAATASND--NTARLWDADTG 621 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI 305 + N + FS +GK + D ++ D + + N Sbjct: 622 KQIF---VLNHGDWVNNVVFSPDGKYVA-TASNDNTARLW--DADTGKQIFVLNHNGSVN 675 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 +A +SPD I S+ + ++ Q + + S + V+SP G IA Sbjct: 676 NAVFSPDGKYIATASN---DNTARLWNADTGKQIFVL-NHNGSVNNAVFSPDGKYIATAS 731 Query: 366 FSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 G+ D ++ +L S + +SP G+ + + D ++L+ I Sbjct: 732 NDNTA---GLWDADTGKQIFVLNHGSWVNNVVFSPDGKYIATAS---FDNTARLWDI-AT 784 Query: 425 GRNETLINTPAYASDPQWVG 444 G + +N ++ D + Sbjct: 785 GNSIFALNHDSWVYDVMFSP 804 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 91/243 (37%), Gaps = 20/243 (8%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R + + + + FSP+ + A A+ D + R++ DT + N + Sbjct: 540 HRVVVLNHNGWVNNVVFSPDGKYAATASND--NTARLWDADTGKQIF---VLNHSGWVNN 594 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 FS +GK A + D ++ D + + N + +SPD + S+ Sbjct: 595 VVFSPDGKYAA-TASNDNTARLW--DADTGKQIFVLNHGDWVNNVVFSPDGKYVATASN- 650 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 + ++ Q + + S + V+SP G IA + D + Sbjct: 651 --DNTARLWDADTGKQIFVL-NHNGSVNNAVFSPDGKYIATASNDNTA---RLWNADTGK 704 Query: 383 ER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 + +L + ++ +SP G+ + + D + L+ D G+ ++N ++ ++ Sbjct: 705 QIFVLNHNGSVNNAVFSPDGKYIATASN---DNTAGLWDAD-TGKQIFVLNHGSWVNNVV 760 Query: 442 WVG 444 + Sbjct: 761 FSP 763 Score = 93.5 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 77/217 (35%), Gaps = 21/217 (9%) Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT 294 D ++ + + N + FS +GK A + D ++ D + Sbjct: 526 DADKLIRQELLSIPHRVVVLNHNGWVNNVVFSPDGKYAA-TASNDNTARLW--DADTGKQ 582 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + N + +SPD S+ + ++ Q + + + V+ Sbjct: 583 IFVLNHSGWVNNVVFSPDGKYAATASN---DNTARLWDADTGKQIFVLNHGDW-VNNVVF 638 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKK--- 410 SP G +A + D ++ +L + ++ +SP G+ + + Sbjct: 639 SPDGKYVATASNDNTA---RLWDADTGKQIFVLNHNGSVNNAVFSPDGKYIATASNDNTA 695 Query: 411 ---DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + DTG +++ ++ NG +N ++ D +++ Sbjct: 696 RLWNADTGKQIFVLNHNGS----VNNAVFSPDGKYIA 728 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 104/309 (33%), Gaps = 47/309 (15%) Query: 129 RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGI 188 RLW+ KQI +Y ++ G + + SG Sbjct: 939 RLWNADTGKQIFVLNHNG--------------RVYNAVFSPDGKY--------IATASGD 976 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 L D + + +++ FSP+ + +A A++D + R++ T Sbjct: 977 DTARLWDTD---TGKQIFVLNHSGWVYDVVFSPDGKYIATASFD--NTARLWNAATGEQI 1031 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 R +L+ FS +GK + D ++ D + + N + Sbjct: 1032 FVLR---HSDKVLSAVFSPDGKYVA-TASNDNTARLW--DADTGKQIFVLNHGSWVNNVV 1085 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD I S+ + ++ Q + + + V+S G IA + Sbjct: 1086 FSPDGKYIATASN---DNTARLWDADTGKQIFVL-NHSGWVNNVVFSRDGKYIATASYDK 1141 Query: 369 EKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + D ++ +L + + +S G+ + + D ++L+ ++ + Sbjct: 1142 TA---RLWNADTGKQVFVLNHNGPVYKVVFSSDGKYVATASD---DNKARLW---IHNKT 1192 Query: 428 ETLINTPAY 436 E LI+ Sbjct: 1193 EDLIHEAGN 1201 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 78/256 (30%), Gaps = 54/256 (21%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ I RLWD KQI +Y + G Sbjct: 967 GKYIATASGDDTA--RLWDTDTGKQIFVLNHSG--------------WVYDVVFSPDG-- 1008 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + + N+ + + ++ D++L FSP+ + VA A+ D Sbjct: 1009 --------KYIATASFDNTARLWNAATGEQIFVLRHSDKVLSA-VFSPDGKYVATASND- 1058 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + R++ DT + N S + FS +GK + D ++ D + Sbjct: 1059 -NTARLWDADTGKQIF---VLNHGSWVNNVVFSPDGKYIA-TASNDNTARLW--DADTGK 1111 Query: 294 TERLTNTLFINISASYSPDSS-------------------QIVFESDREGKEQLYVMQSN 334 + N + +S D + VF + G V S+ Sbjct: 1112 QIFVLNHSGWVNNVVFSRDGKYIATASYDKTARLWNADTGKQVFVLNHNGPVYKVVFSSD 1171 Query: 335 GSDQKRISQDKEASYF 350 G S D +A + Sbjct: 1172 GKYVATASDDNKARLW 1187 >gi|317475671|ref|ZP_07934931.1| hypothetical protein HMPREF1016_01913 [Bacteroides eggerthii 1_2_48FAA] gi|316908127|gb|EFV29821.1| hypothetical protein HMPREF1016_01913 [Bacteroides eggerthii 1_2_48FAA] Length = 1086 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 38/222 (17%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + F S AP + S +G + + D IY+V + +LT + Sbjct: 13 LAAFTSAQDAPLWLRHCAISPDGTTIAFTYKGD----IYTVPVDGGRAMQLTTNPAHDTE 68 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD +I F SDR G +Y++ G + +R++ S +S G I F+ Sbjct: 69 PVWSPDGKRIAFASDRMGSMDVYIVSKEGGEPRRLTT-HSGSETPVAFSDAG-HILFSAD 126 Query: 367 -----------SGEKFA-IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL---------I 405 S +F + + +G + +L ++ + + G L Sbjct: 127 IMPSAETVLFPSNGQFRQVYKVSVEGGRP-VLYSPMPMECISINKEGTVLYQDKKGYEDY 185 Query: 406 FSRKKDGDTGSKLYSIDLNGRN---ETLINTPAYASDPQWVG 444 + + + ++ G L +P W Sbjct: 186 WRKHQVSPIARDIWMY-APGEKPAYRQLTTFGGEDREPVWAP 226 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 31/221 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V + R ++ + P +S +GKR + Sbjct: 30 AISPDGTTIAFTY--KGDIYTVPVDGGRAM----QLTTNPAHDTEPVWSPDGKRIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 + +MD+Y V + RLT ++S D+ I+F +D + + SNG Sbjct: 84 RMGSMDVYIVSKEGGEPRRLTTHSGSETPVAFS-DAGHILFSADIMPSAETVLFPSNG-Q 141 Query: 338 QKRISQDKEASYFDPVWSP----------QGDLIAFTKFSGEKF-----------AIGVM 376 +++ + ++SP +G ++ K E + I + Sbjct: 142 FRQVYKVSVEGGRPVLYSPMPMECISINKEGTVLYQDKKGYEDYWRKHQVSPIARDIWMY 201 Query: 377 KKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 +L + P W+P G+S + +++G Sbjct: 202 APGEKPAYRQLTTFGGEDREPVWAPDGKSFYYLSEENGTFN 242 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 111/302 (36%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN G + V +R+L+ + D L + + Sbjct: 231 FYYLSEENGTFN------VYRRTPGAASAT-QVTHHTKQPVRFLSIAADGRLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + + ++ + D+ R S NGK ++ D Sbjct: 281 GEIYTLVPGGEPRKVNISIVSDKSDKDLIRQIKSSGATEM-ALSPNGKEVAFVLRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y + T+++TNT ++PD +V+ S+R G QLY D+K + Sbjct: 337 -VYVTSVDYKTTKQVTNTPCQERGVDFAPDGRSLVYASERGGLWQLYTSAIVRKDEKLFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE---- 388 + +A+ F P +SP G +AF + AI V+ R +++ Sbjct: 396 YATELKEERLTNSDAASFQPQYSPDGKEVAFLENRA---AIRVINLKTKAVRTVMDAKYQ 452 Query: 389 ---DSNLQAPTWSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 Q WSP + ++ F G + ++ +G+ E + T + +D + Sbjct: 453 YSYSDGDQWFRWSPDSKWILSDFI-GIGGWNNKDVVLLNADGKGEMVNLTESGYTDGNAK 511 Query: 442 WV 443 WV Sbjct: 512 WV 513 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 30/250 (12%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V G + + D ++ + + E SPN ++VA+ D VY+ Sbjct: 287 VPGGEPRKVNISIVSDKSDKDLIRQIKSSGATEMALSPNGKEVAFVLRGD-----VYVTS 341 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN----------- 292 + K++ N F+ +G+ + + ++ +Y+ + Sbjct: 342 VDY-KTTKQVTNTPCQERGVDFAPDGRSLVYASERGGLWQLYTSAIVRKDEKLFTYATEL 400 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF-- 350 ERLTN+ + YSPD ++ F +R + V+ + + K + Sbjct: 401 KEERLTNSDAASFQPQYSPDGKEVAFLENRA---AIRVINLKTKAVRTVMDAKYQYSYSD 457 Query: 351 ---DPVWSPQGDLIA--FTKFSG-EKFAIGVMKKDGSQERL-LVEDSNLQAPT-WSPSGR 402 WSP I F G + ++ DG E + L E W G+ Sbjct: 458 GDQWFRWSPDSKWILSDFIGIGGWNNKDVVLLNADGKGEMVNLTESGYTDGNAKWVLGGK 517 Query: 403 SLIFSRKKDG 412 ++I++ + G Sbjct: 518 AMIWTSDRAG 527 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 90/247 (36%), Gaps = 31/247 (12%) Query: 222 NQQKVAYATYDDEDILR-VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + + + I R +++ A +++ F P ++ +GK +++ Sbjct: 180 KGYEDYWRKHQVSPIARDIWMYAPGEKPAYRQLTTFGGEDREPVWAPDGKSFYYLSEENG 239 Query: 281 AMDIYSVDLQSNATERLTNTL---------FINISASYSPDSSQIVFESDREGKEQ---L 328 ++Y + + ++T+ + Y D ++ G+ + + Sbjct: 240 TFNVYRRTPGAASATQVTHHTKQPVRFLSIAADGRLCYGFDGE--IYTLVPGGEPRKVNI 297 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 ++ + SD+ I Q K + + SP G +AF + V D + + Sbjct: 298 SIVS-DKSDKDLIRQIKSSGATEMALSPNGKEVAFVLRGD----VYVTSVDYKTTKQVTN 352 Query: 389 DS-NLQAPTWSPSGRSLIFSRKKDG----------DTGSKLYSIDLNGRNETLINTPAYA 437 + ++P GRSL+++ ++ G KL++ + E L N+ A + Sbjct: 353 TPCQERGVDFAPDGRSLVYASERGGLWQLYTSAIVRKDEKLFTYATELKEERLTNSDAAS 412 Query: 438 SDPQWVG 444 PQ+ Sbjct: 413 FQPQYSP 419 >gi|281419894|ref|ZP_06250893.1| MdsD protein [Prevotella copri DSM 18205] gi|281406021|gb|EFB36701.1| MdsD protein [Prevotella copri DSM 18205] Length = 1077 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 28/200 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + + D +YSV + +LT + +SPDS +I F+S+R Sbjct: 29 PAISPDGTTIAFAYKGD----LYSVSVNGGEARQLTTHAAFDSHPVWSPDSKKIAFQSNR 84 Query: 323 EGKEQLYVMQSNGSDQKRISQ-----------DKEASYFDPVWSPQGDLIAFTKFSGEKF 371 EG ++V+ + G R++ D + + P I F Sbjct: 85 EGSLDIFVIDAKGGAPTRLTTNSGSETPIAFADNDHVLYSASLQPTAQSIIFG--DNTFP 142 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSID 422 + + G + L ++ + + +G L + + + ++ Sbjct: 143 QVYKVSTKGGRPE-LFSTLTMENISIAKNGDILYHDKKGYEDPWRKHQKSPIARDIWLKS 201 Query: 423 LNGRNETLINTPAYASDPQW 442 NG+ P W Sbjct: 202 -NGKFAKQTTFAGEDRSPVW 220 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 110/269 (40%), Gaps = 32/269 (11%) Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + G +R+LT S +L + + + Y + + +V + T + AP + Sbjct: 252 ITHHKGNPVRFLTASSTDLLC---YGYDGE--IYTVKEGGEPQKVNISITTDNDAPSLVR 306 Query: 255 NFRSM-ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 +S S + K + D +Y ++ T+R+T+T S+SPD Sbjct: 307 QIKSWGATEISVSPDAKEVAFVMHGD----VYVTSVEYTTTKRITDTPQQERDLSFSPDG 362 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAF 363 +V+ ++R G Q+Y + +K + + + P +SP G +AF Sbjct: 363 RALVYAAERNGVWQIYQSKIKNEKEKNFTYATDIEEEQLVKTGITSQYPQYSPDGKEVAF 422 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIFSRKKDGDTGS 416 + ++ A+ ++ + R +++ + + + WSP + L+ + +G + Sbjct: 423 FE---DRAALRIVNLKSKEIRTVLDGKYVYSYSDGDIGFEWSPDSKWLLSTYIGNGGWNN 479 Query: 417 K-LYSIDLNGRNETLINTPAYA-SDPQWV 443 + + + +G+ + Y+ S+ +WV Sbjct: 480 QDIALVKADGKEVHNLTNSGYSDSNGKWV 508 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 39/247 (15%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P SP+ +A+A D+ V + +++ + P +S + Sbjct: 22 HPLWMRYPAISPDGTTIAFAY--KGDLYSVSVN----GGEARQLTTHAAFDSHPVWSPDS 75 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI------------SASYSPDSSQIV 317 K+ ++ ++DI+ +D + A RLT SAS P + I+ Sbjct: 76 KKIAFQSNREGSLDIFVIDAKGGAPTRLTTNSGSETPIAFADNDHVLYSASLQPTAQSII 135 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------- 370 F Q+Y + + G + S + + + GD I + G + Sbjct: 136 F--GDNTFPQVYKVSTKGGRPELFSTL---TMENISIAKNGD-ILYHDKKGYEDPWRKHQ 189 Query: 371 -----FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 I + K +G + ++P W+ +S + ++DG +Y LN Sbjct: 190 KSPIARDIWL-KSNGKFAKQTTFAGEDRSPVWTSDEKSFFYLSEQDGTF--NIYRRSLNS 246 Query: 426 RNETLIN 432 ++ I Sbjct: 247 SSDKQIT 253 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 90/258 (34%), Gaps = 39/258 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMD-------TRIDRAPKRIGNFRSMILAPRFSSNGK 270 + N + + ED R + + + + F +P ++S+ K Sbjct: 166 SIAKNGDILYHDKKGYEDPWRKHQKSPIARDIWLKSNGKFAKQTTFAGEDRSPVWTSDEK 225 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA---------SYSPDSSQIVFESD 321 ++D +IY L S++ +++T+ + Y D ++ Sbjct: 226 SFFYLSEQDGTFNIYRRSLNSSSDKQITHHKGNPVRFLTASSTDLLCYGYDGE--IYTVK 283 Query: 322 REGKEQLYVMQ--SNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 G+ Q + ++ + Q K + SP +AF + V + Sbjct: 284 EGGEPQKVNISITTDNDAPSLVRQIKSWGATEISVSPDAKEVAFVMHGD----VYVTSVE 339 Query: 380 GSQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDGDTGSKLY------------SIDLNGR 426 + + + + + ++SP GR+L+++ +++G ++Y + + Sbjct: 340 YTTTKRITDTPQQERDLSFSPDGRALVYAAERNG--VWQIYQSKIKNEKEKNFTYATDIE 397 Query: 427 NETLINTPAYASDPQWVG 444 E L+ T + PQ+ Sbjct: 398 EEQLVKTGITSQYPQYSP 415 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLM---DTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 P++SP+ ++VA+ ++D LR+ + + R K + ++ + +S + K Sbjct: 410 YPQYSPDGKEVAF--FEDRAALRIVNLKSKEIRTVLDGKYVYSYSDGDIGFEWSPDSKWL 467 Query: 273 LISVQKDE---AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 L + + DI V LTN+ + + + + D ++F+SDR G Sbjct: 468 LSTYIGNGGWNNQDIALVKADGKEVHNLTNSGYSDSNGKWVLDGKAMLFQSDRAG 522 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ P SP G ++ F+ K LYS+ +NG + T A+ S P W Sbjct: 26 MRYPAISPDGTTIAFAYK------GDLYSVSVNGGEARQLTTHAAFDSHPVWSP 73 >gi|160891274|ref|ZP_02072277.1| hypothetical protein BACUNI_03723 [Bacteroides uniformis ATCC 8492] gi|317481149|ref|ZP_07940224.1| hypothetical protein HMPREF1007_03343 [Bacteroides sp. 4_1_36] gi|156859495|gb|EDO52926.1| hypothetical protein BACUNI_03723 [Bacteroides uniformis ATCC 8492] gi|316902645|gb|EFV24524.1| hypothetical protein HMPREF1007_03343 [Bacteroides sp. 4_1_36] Length = 1090 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + P + S +G + D IY V + +LT + Sbjct: 12 LTAIAGHAATPLWMRDVQISPDGTEIAFCYKGD----IYKVPAKGGTATQLTTQESYECT 67 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD QI F SDR G ++VM ++G +R++ ++P G I F+ Sbjct: 68 PIWSPDGKQIAFASDRYGNFDVFVMPADGGTAQRLTTHSTGE-IPSTFTPDGKYILFSAS 126 Query: 367 -----------SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD---- 411 + + + G + ++ +A + +G ++ +K Sbjct: 127 IQDPASSALFPTSAMTELYKVPATGGRTEQVLGTP-AEAVCFDKAGHQFLYQDRKGFEDE 185 Query: 412 ------GDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 ++ D G + L + +P Sbjct: 186 WRKHHTSSITRDIWLYDAKTGIHTNLTDRAGEDRNPVLSP 225 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 35/221 (15%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ ++A+ DI +V ++ S P +S +GK+ + + Sbjct: 30 ISPDGTEIAFCY--KGDIYKV----PAKGGTATQLTTQESYECTPIWSPDGKQIAFASDR 83 Query: 279 DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKEQ 327 D++ + +RLT I ++++PD I+F + + Sbjct: 84 YGNFDVFVMPADGGTAQRLTTHSTGEIPSTFTPDGKYILFSASIQDPASSALFPTSAMTE 143 Query: 328 LYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 LY + + G +++ EA FD G + S I Sbjct: 144 LYKVPATGGRTEQVLGTPAEAVCFDKA----GHQFLYQDRKGFEDEWRKHHTSSITRDIW 199 Query: 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDT 414 + L + + P SP GR++ F +++G + Sbjct: 200 LYDAKTGIHTNLTDRAGEDRNPVLSPDGRTVYFLSERNGGS 240 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 103/323 (31%), Gaps = 81/323 (25%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + I + + D I R P SP+ + V + + + VY Sbjct: 191 TSSITRDIWLYDAK-TGIHTNLTDRAGEDRNPVLSPDGRTVYFLSERNGGSFNVYAFPLA 249 Query: 246 IDRAPKRIGNFRSM---------------------------------------------- 259 R K I +F++ Sbjct: 250 QPREVKPITSFKTHPVRFLSMSDGETLCYSYDGEIYTQQPDATPKKVAIELVRDDRPQFA 309 Query: 260 -------ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + S +GK+ +++ +++ T+++T+T S++ D Sbjct: 310 NLQSSDGATSAVVSPDGKQIAFTLRG----EVFVTSADYATTKQVTHTPAREAGLSFATD 365 Query: 313 SSQIVFESDREGKEQLYVM-----------QSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + + + S+R G QLY+ + +++ + P +SP G + Sbjct: 366 NRTLAYASERGGNWQLYLAKIARKEDPNFPNATLIEEEVLLPSTTVERAYPQFSPDGKEL 425 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGD 413 AF + ++ + V+ + + R + + S + WSP G+ L F+ K D Sbjct: 426 AFIE---DRIRLMVLNLETKKVRQITDGSTWYSTGGGFDYAWSPDGKWFTLEFTGNKH-D 481 Query: 414 TGSKLYSIDLNGRNETLINTPAY 436 S + + G + + T + Sbjct: 482 PYSDIGLVSAEGGKDIINLTNSG 504 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 82/232 (35%), Gaps = 30/232 (12%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 ++ SP+ +++A+ + + + K++ + + Sbjct: 305 RPQFANLQSSDGATSAVVSPDGKQIAFTLRGE------VFVTSADYATTKQVTHTPAREA 358 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS------------ASY 309 F+++ + + ++ +Y + N I + Sbjct: 359 GLSFATDNRTLAYASERGGNWQLYLAKIARKEDPNFPNATLIEEEVLLPSTTVERAYPQF 418 Query: 310 SPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDL--IAF 363 SPD ++ F DR +L V+ ++I+ FD WSP G + F Sbjct: 419 SPDGKELAFIEDRI---RLMVLNLETKKVRQITDGSTWYSTGGGFDYAWSPDGKWFTLEF 475 Query: 364 TKFSGEKF-AIGVMKKDGSQERL-LVEDSNLQA-PTWSPSGRSLIFSRKKDG 412 T + + IG++ +G ++ + L + P ++ G +++F+ ++ G Sbjct: 476 TGNKHDPYSDIGLVSAEGGKDIINLTNSGYMSGYPHFALDGNAILFTTERYG 527 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 48/357 (13%), Positives = 113/357 (31%), Gaps = 100/357 (28%) Query: 166 ITGEKGDFNSRILFVSESVVSGI------IKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 +T G + + + K + + G LT ++ P + Sbjct: 12 LTAIAGHAATPLWMRDVQISPDGTEIAFCYKGDIYKVPAKGGTATQLTT-QESYECTPIW 70 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ +++A+A+ + V++M +R+ + + F+ +GK L S Sbjct: 71 SPDGKQIAFASDRYGN-FDVFVMPAD-GGTAQRLTTHSTGEIPSTFTPDGKYILFSASIQ 128 Query: 280 E-----------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---- 324 + ++Y V TE++ T + + Q +++ DR+G Sbjct: 129 DPASSALFPTSAMTELYKVPATGGRTEQVLGTPAEAV--CFDKAGHQFLYQ-DRKGFEDE 185 Query: 325 ---------KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-TKFSGEKFA-- 372 +++ + ++ D+ +PV SP G + F ++ +G F Sbjct: 186 WRKHHTSSITRDIWLYDAKTGIHTNLT-DRAGEDRNPVLSPDGRTVYFLSERNGGSFNVY 244 Query: 373 ---------------------------------------IGVMKKDGSQERLLVEDSNLQ 393 I + D + +++ +E Sbjct: 245 AFPLAQPREVKPITSFKTHPVRFLSMSDGETLCYSYDGEIYTQQPDATPKKVAIELVRDD 304 Query: 394 APTW--------------SPSGRSLIFSRKKDGDTGSKLYSIDLN-GRNETLINTPA 435 P + SP G+ + F+ + +++ + + + +TPA Sbjct: 305 RPQFANLQSSDGATSAVVSPDGKQIAFTLR------GEVFVTSADYATTKQVTHTPA 355 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 93/243 (38%), Gaps = 31/243 (12%) Query: 95 DSIPRFQDWNSL-GAQVLVTGRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWR 152 D P+F + S GA V V +GK + ++ V K+ +PA R Sbjct: 303 DDRPQFANLQSSDGATSAV---VSPDGKQIAFTLRGEVF-VTSADYATTKQVTHTPA--R 356 Query: 153 KIAHTIS--DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSR 210 + + + + + G++ + ++ +L L PS Sbjct: 357 EAGLSFATDNRTLAYASERGGNWQLYLAKIARKEDPNFPNATLI-------EEEVLLPST 409 Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-----SMILAPRF 265 P+FSP+ +++A+ ED +R+ +++ + ++I + + Sbjct: 410 TVERAYPQFSPDGKELAFI----EDRIRLMVLNLET-KKVRQITDGSTWYSTGGGFDYAW 464 Query: 266 SSNGKR--ALISVQK-DEAMDIYSVDLQSNA-TERLTNTLFINISASYSPDSSQIVFESD 321 S +GK + K D DI V + LTN+ +++ ++ D + I+F ++ Sbjct: 465 SPDGKWFTLEFTGNKHDPYSDIGLVSAEGGKDIINLTNSGYMSGYPHFALDGNAILFTTE 524 Query: 322 REG 324 R G Sbjct: 525 RYG 527 >gi|125543618|gb|EAY89757.1| hypothetical protein OsI_11300 [Oryza sativa Indica Group] Length = 737 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 108/294 (36%), Gaps = 69/294 (23%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI- 274 P FS + ++A+ + + + R+ + + +P ++S + Sbjct: 403 FPTFSKDGSQLAFVDNEFKSVWLADSQGMRVVFK----TDGPDSVFSPLWNSKKDILYVC 458 Query: 275 ---SVQKDEAMDIYSV-DLQSN--ATERLTNTLFINISASYSPDSSQIVFESDREGK--- 325 S + E ++I+S+ ++ + + +LT F N S +PD ++ VF S R+G Sbjct: 459 MGPSFKASETLEIHSIHNVSTGDRKSRQLTFGGFNNAFPSTNPDGTKFVFRSTRDGGAKY 518 Query: 326 -EQLYVM-QSNGSD--------QKRISQDKEASYFDPVWSPQGDLIAFTKFSG------- 368 + LY+M ++ + R++ E + WSP G I F+ Sbjct: 519 SKNLYIMEDADAGEGEDGSQSTVTRMT-AGEWTDTHCQWSPNGKWIVFSSNRDRPADAPE 577 Query: 369 -------EKFAIGVMK-KDGSQERLLVED----SNLQAPTWSPSGRSLIFSRK------- 409 FA+ +M S R++ ++ P +SP GRS+ + Sbjct: 578 RDHGLDPGYFAVYLMDVASRSVVRVIRSGYDVAGHVNHPVFSPDGRSIAVTSDLAAVTAD 637 Query: 410 --------KDGDTGSKLYSIDLN----GRNE------TLINTPAYASDPQWVGF 445 ++++D++ RNE + ++ S P W F Sbjct: 638 PMSLPLFLHSVRPYGDIFTVDIDPDDMARNEDVEGFVRVTHSRYENSTPAWTVF 691 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 16/124 (12%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG---------KEQ 327 ++ Y +L++ TERLT +IS S SP ++ S + Sbjct: 168 RRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTN 227 Query: 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK----FAIGVMKKDGSQE 383 +YVM Q R + + P W + D+I F + G + + + Sbjct: 228 IYVMSLENPSQDRERVIENGGW--PSWGSE-DVIFFHRKDGGGENSCWGVFRHTLSTGET 284 Query: 384 RLLV 387 + Sbjct: 285 VRVT 288 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 13/89 (14%) Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT-------GSK 417 + S A + G ERL + +P+ SPSG+ + + + + Sbjct: 168 RRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNTN 227 Query: 418 LYSIDLNG---RNETLINTPAYASDPQWV 443 +Y + L E +I + P W Sbjct: 228 IYVMSLENPSQDRERVIENGGW---PSWG 253 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 25/153 (16%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ---------KDEAM 282 + V +R+ + ++P S +GK+ ++ K+ Sbjct: 167 ERRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWDGEIKNLNT 226 Query: 283 DIYSVDLQ--SNATERLTNTLFINISASYSPDSSQIV--FESDREGKEQ----LYVMQSN 334 +IY + L+ S ER+ S+ S+ V F G E ++ + Sbjct: 227 NIYVMSLENPSQDRERVIENGGW---PSW---GSEDVIFFHRKDGGGENSCWGVFRHTLS 280 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + R++ + +A Sbjct: 281 TGETVRVTPAAFDAVTPAAI--DETRVAVAAIR 311 >gi|268317952|ref|YP_003291671.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335486|gb|ACY49283.1| peptidase S9B dipeptidylpeptidase IV domain protein [Rhodothermus marinus DSM 4252] Length = 1078 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 35/276 (12%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP--------RFSPNQQKV 226 RI F++ +G+ L + DG +R L + FE +SP+ + + Sbjct: 307 DRIAFITTR--NGLFDVYLASAN-DGKILRRLVAGQTSPDFESLRILTPGLTWSPDGRFL 363 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 A A + +++ + IL+ +S +G+R + + DIY Sbjct: 364 ALA-VKSGPTDAIAVINVETGAHVRYRIPDVEQILSLAWSPDGRRIAFAGTQRAQSDIYV 422 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE-----GKEQ-------------- 327 +DL++ T TN F + ++ PD +VF SDR G+ Q Sbjct: 423 LDLRTGETINYTNDAFSDHEPAWRPDGRALVFHSDRGPYVEPGRYQAGQFDLTARLSRGY 482 Query: 328 -LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 LY++ + +R++ + + D + F + ER L Sbjct: 483 DLYLLHLDPVRIERLTTTEPWDDRSGRFGSDPDRLLFISDRNGIPNLYEKDLRTGAERPL 542 Query: 387 VEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 + +Q + S G ++G +Y I Sbjct: 543 TDVVMGIQQVSLSADGHRAAVVSLREG--VPSIYLI 576 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 75/269 (27%), Gaps = 49/269 (18%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R+ +++ Y + I R N +P S G R Sbjct: 261 RWHKALREIYYPELTARE------QLDDIGRPLLTARNAGYYNTSPALSPQGDRIAFITT 314 Query: 278 KDEAMDIYSVDL-QSNATERLTNTLFINISA------------SYSPDSSQIVFESDREG 324 ++ D+Y RL S ++SPD + Sbjct: 315 RNGLFDVYLASANDGKILRRLVAG---QTSPDFESLRILTPGLTWSPDGRFLALAVKSGP 371 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + + V+ R WSP G IAF + I V+ + Sbjct: 372 TDAIAVINVETGAHVRYRIPDVEQILSLAWSPDGRRIAFAGTQRAQSDIYVLDLRTGETI 431 Query: 385 LLVED-SNLQAPTWSPSGRSLIFSRKKDG------------------DTGSKLYSIDLNG 425 D + P W P GR+L+F + G LY + L+ Sbjct: 432 NYTNDAFSDHEPAWRPDGRALVFHSDRGPYVEPGRYQAGQFDLTARLSRGYDLYLLHLDP 491 Query: 426 -RNETLINT-------PAYASDPQWVGFM 446 R E L T + SDP + F+ Sbjct: 492 VRIERLTTTEPWDDRSGRFGSDPDRLLFI 520 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 32/270 (11%) Query: 130 LWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQ-SITGEKGDFNSRILFVSESVVSGI 188 L+DV GK R +A S D I ++ F++ +V SG Sbjct: 318 LFDVYLASANDGKILR------RLVAGQTSPDFESLRILTPGLTWSPDGRFLALAVKSGP 371 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + GA++RY P +QIL +SP+ +++A+A +Y++D R Sbjct: 372 TDAIAVINVETGAHVRYRIPDVEQILSL-AWSPDGRRIAFAG-TQRAQSDIYVLDLRTGE 429 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKD--------------------EAMDIYSVD 288 N P + +G+ + + D+Y + Sbjct: 430 TIN-YTNDAFSDHEPAWRPDGRALVFHSDRGPYVEPGRYQAGQFDLTARLSRGYDLYLLH 488 Query: 289 LQSNATERLTNT-LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 L ERLT T + + S + D +++F SDR G LY ++ ++ D Sbjct: 489 LDPVRIERLTTTEPWDDRSGRFGSDPDRLLFISDRNGIPNLYEKDLRTGAERPLT-DVVM 547 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 S G A +I ++K Sbjct: 548 GIQQVSLSADGHRAAVVSLREGVPSIYLIK 577 >gi|327402631|ref|YP_004343469.1| peptidase S41 [Fluviicola taffensis DSM 16823] gi|327318139|gb|AEA42631.1| peptidase S41 [Fluviicola taffensis DSM 16823] Length = 1088 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 85/237 (35%), Gaps = 35/237 (14%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + P SP+ + + + DI +V + + P FS +G Sbjct: 29 NPLWMRYPVISPDGKTIVFTY--KGDIYQV----PAAGGVAAPVTLSGAHDFMPVFSPDG 82 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK---- 325 K + + D++SV LQ AT+RLT + S D +I+F + R Sbjct: 83 KTIYFASDRHGNFDVFSVPLQGGATKRLTFHSSNDYPQCLSDDGKRIIFIAARGDNAAMS 142 Query: 326 -------EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKF 366 ++Y + +G +K+ + + + W+ G + F Sbjct: 143 QFPYGALGEVYSVGIDGGREKQ---ELSITAENIKWNKAGTKMLFHDKKGYEDPWRKHHQ 199 Query: 367 SGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 S + + +K+G + L + + P W+ ++ + +K G ++ ++ Sbjct: 200 SSVTRDVWMYEKEGDKFTKLTDFGGEDRNPVWNSDESNIFYLSEKSGS--YNVWKMN 254 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 28/225 (12%) Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN 299 +M R+ P+ + P S +GK + + + D IY V +T Sbjct: 13 MIMSLRMPTPPQEASTNPLWMRYPVISPDGKTIVFTYKGD----IYQVPAAGGVAAPVTL 68 Query: 300 TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + + +SPD I F SDR G ++ + G KR++ ++ + S G Sbjct: 69 SGAHDFMPVFSPDGKTIYFASDRHGNFDVFSVPLQGGATKRLTF-HSSNDYPQCLSDDGK 127 Query: 360 LIAFTKFSGEKF-----------AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF-- 406 I F G+ + + DG +E+ + + W+ +G ++F Sbjct: 128 RIIFIAARGDNAAMSQFPYGALGEVYSVGIDGGREKQEL-SITAENIKWNKAGTKMLFHD 186 Query: 407 --------SRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQW 442 + ++ + G + L + +P W Sbjct: 187 KKGYEDPWRKHHQSSVTRDVWMYEKEGDKFTKLTDFGGEDRNPVW 231 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 121/300 (40%), Gaps = 40/300 (13%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 SD+ EK + + ++ S + + V D +R+L+ S + L Sbjct: 233 SDESNIFYLSEKS-GSYNVWKMNPSSPNAATQ----VSKFDKNPVRFLSVSNENTLC--- 284 Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQ 277 + + + Y + + +V + DR + + NGK + + Sbjct: 285 YGYDGE--IYTQKEGSNPQKVNIQINAEDRNADNKNSVETGGASEIAVAPNGKEVVFT-- 340 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV------- 330 D+++V L++ T+++TNT + S+SPD I++ S+R +Y Sbjct: 341 --NHGDVFTVSLENGVTKQITNTPEEERNVSFSPDGKAILYASERNKIWGIYQTTMIRKE 398 Query: 331 -----MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + ++ I DKE+ F P +SP G IAF + A+ V + R Sbjct: 399 DAYFYVSTLLKEEALIVTDKES--FQPQYSPDGKEIAFLENRT---AVSVYNLASKKIRN 453 Query: 386 LVEDSNLQAPT-------WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-INTPAYA 437 ++ ++ + + W+P + ++ S +DG+ ++ +D++G L + ++ Sbjct: 454 VLPETKNYSYSDGDQTFNWAPDSKYILVSFLQDGNWHEQIGLVDVSGGKPMLELTQNGFS 513 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 29/215 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +PN ++V + + D+ V L + K+I N FS +GK L + + Sbjct: 329 AVAPNGKEVVFT--NHGDVFTVSLEN----GVTKQITNTPEEERNVSFSPDGKAILYASE 382 Query: 278 KDEAMDIYSVDLQSN-----------ATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 +++ IY + E L T + YSPD +I F +R Sbjct: 383 RNKIWGIYQTTMIRKEDAYFYVSTLLKEEALIVTDKESFQPQYSPDGKEIAFLENRT--- 439 Query: 327 QLYVMQSNGSDQKRISQD-KEASYFDPV----WSPQGDLIAFTKFSGEKFA--IGVMKKD 379 + V + + + K SY D W+P I + + IG++ Sbjct: 440 AVSVYNLASKKIRNVLPETKNYSYSDGDQTFNWAPDSKYILVSFLQDGNWHEQIGLVDVS 499 Query: 380 GSQERL-LVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 G + L L ++ + P + G+++++ +DG Sbjct: 500 GGKPMLELTQNGFSNGGPKFQLDGKAILWFSNRDG 534 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 98/285 (34%), Gaps = 57/285 (20%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAY----------ATYDDEDILRVYLMDTRIDRA 249 GA R S + S + +++ + + + + VY + R Sbjct: 105 GATKRLTFHSSNDYPQ--CLSDDGKRIIFIAARGDNAAMSQFPYGALGEVYSVGIDGGRE 162 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDE------------AMDIYSVDLQSNATERL 297 + + I +++ G + L +K D++ + + + +L Sbjct: 163 KQELSITAENI---KWNKAGTKMLFHDKKGYEDPWRKHHQSSVTRDVWMYEKEGDKFTKL 219 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD-QKRISQDKEASYFDPVWSP 356 T+ + + ++ D S I + S++ G ++ M + + ++S+ + S Sbjct: 220 TDFGGEDRNPVWNSDESNIFYLSEKSGSYNVWKMNPSSPNAATQVSKFDKNPVRFLSVS- 278 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLL----------------VEDSNLQAPTWSPS 400 + + + G I K +GS + + VE +P+ Sbjct: 279 NENTLCY----GYDGEIYTQK-EGSNPQKVNIQINAEDRNADNKNSVETGGASEIAVAPN 333 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVG 444 G+ ++F+ ++++ L NG + + NTP + + Sbjct: 334 GKEVVFTNH------GDVFTVSLENGVTKQITNTPEEERNVSFSP 372 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 8/124 (6%) Query: 211 DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG---NFRSMILAPRFSS 267 D+ F+P++SP+ +++A+ ++ + VY + ++ R ++ ++ Sbjct: 417 DKESFQPQYSPDGKEIAF--LENRTAVSVYNLASKKIRNVLPETKNYSYSDGDQTFNWAP 474 Query: 268 NGKRALISVQKDEAM--DIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREG 324 + K L+S +D I VD+ LT F N + D I++ S+R+G Sbjct: 475 DSKYILVSFLQDGNWHEQIGLVDVSGGKPMLELTQNGFSNGGPKFQLDGKAILWFSNRDG 534 Query: 325 KEQL 328 + + Sbjct: 535 MKNV 538 >gi|220918187|ref|YP_002493491.1| WD40 domain protein beta Propeller [Anaeromyxobacter dehalogenans 2CP-1] gi|219956041|gb|ACL66425.1| WD40 domain protein beta Propeller [Anaeromyxobacter dehalogenans 2CP-1] Length = 704 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 95/254 (37%), Gaps = 11/254 (4%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K +L + + S + +SP + Y Y L + Sbjct: 423 SPKRTLWRVPLGPDHADLAAASPIPLTTGNGWSP-RLGPGYLVYLSAKGAGDGLWKLQDG 481 Query: 248 RAPKRIGNFRS-MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + + + + AP +G+ ++ + VD +T+ L ++ + Sbjct: 482 ASTELWSQPGARIAGAPAVRRDGRTIAFWTREGGRTRLRVVDADGTGGRVVTDALQLSGA 541 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 ++ PD I + EG +L+ + +G + + + A DP WSP GDL+AFT Sbjct: 542 PAWMPDGRSIAVGAIVEGAPRLFRVPLDGGEPAALVAEPSA---DPAWSPAGDLLAFTGA 598 Query: 367 S-GEKFAIGVMKKDGSQERL--LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 G F + + DGS R+ L + + P GRS+ + L ++DL Sbjct: 599 DVGTTFPLRAVNADGSAHRMPPLTLTRGARHVAFLPDGRSIAVL--RGEIRRKHLAAVDL 656 Query: 424 -NGRNETLINTPAY 436 +G + L+ P Sbjct: 657 ASGASRRLVVLPRD 670 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 8/212 (3%) Query: 198 RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR 257 +DGA+ + +I P + + +A+ T + + + + + Sbjct: 479 QDGASTELWSQPGARIAGAPAVRRDGRTIAFWTREGGRTRLRVVDADGTGG--RVVTDAL 536 Query: 258 SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 + AP + +G+ + + A ++ V L L + ++SP + Sbjct: 537 QLSGAPAWMPDGRSIAVGAIVEGAPRLFRVPLDGGEPAALVAEPSAD--PAWSPAGDLLA 594 Query: 318 FE-SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 F +D L + ++GS + + P G IA + + + + Sbjct: 595 FTGADVGTTFPLRAVNADGSAHRMPPLTLTRGARHVAFLPDGRSIAVLRGEIRRKHLAAV 654 Query: 377 KKDGSQERLLV---EDSNLQAPTWSPSGRSLI 405 R LV D ++ SP GR L+ Sbjct: 655 DLASGASRRLVVLPRDFDVGDFDVSPDGRELV 686 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 18/243 (7%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR-- 264 + S + + VA+ + + V+L + ++ P Sbjct: 166 LTDFGGVEQAAAISADGRFVAFLSDRAGR-VDVWLTQVGSGQFQDLTRGSAPELVNPSIR 224 Query: 265 ---FSSNGKRALISVQKDEAMD-----IYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 FS +G + I++V L +++ D +++ Sbjct: 225 TLGFSPDGALVTFWARGRTGSSPPDIGIWAVPLLGGPPRPYLEGAA---EYAWTRDGTRL 281 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFD-PVWSPQGDLIAFTKFS-GEKFAIG 374 V + G D +RI + VWSP I F + + ++ + Sbjct: 282 VHHTPGPGDPMYVSEAGRPQDARRIFSAPSGLHAHFQVWSPDQAFIYFVQGALPDRLDLW 341 Query: 375 VMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 ++ DGS ERL D + P ++ R+L++ +G L+++D+ GR + T Sbjct: 342 RIRPDGSAPERLTHHDGVVSHPVFA-DERTLLYLATDPDGSGPWLHALDVEGRATRRVAT 400 Query: 434 PAY 436 A Sbjct: 401 GAE 403 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 103/327 (31%), Gaps = 61/327 (18%) Query: 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA 229 D + S + + G R + ++ + ++ + Sbjct: 229 SPDGALVTFWARGRTGSSPPDIGIWAVPLLGGPPRPYLEGAAEY----AWTRDGTRLVHH 284 Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA--PRFSSNGKRALIS-VQKDEAMDIYS 286 T D + Y+ + + +RI + S + A +S + + +D++ Sbjct: 285 TPGPGDPM--YVSEAGRPQDARRIFSAPSGLHAHFQVWSPDQAFIYFVQGALPDRLDLWR 342 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-KEQLYVMQSNGSDQKRISQDK 345 + +A ERLT+ + ++ + + + +D +G L+ + G +R++ Sbjct: 343 IRPDGSAPERLTHHDGVVSHPVFADERTLLYLATDPDGSGPWLHALDVEGRATRRVATGA 402 Query: 346 EASYFDPVWSPQGDLIA-----------------------------------FTKFSGEK 370 E Y S G + ++ G Sbjct: 403 ER-YTSLAASADGRRLVLTQASPKRTLWRVPLGPDHADLAAASPIPLTTGNGWSPRLGPG 461 Query: 371 FAIGV-MKKDGSQERLLVEDSNLQ-----------APTWSPSGRSLIFSRKKDGDTGSKL 418 + + + K G L + ++ + AP GR++ F ++ G T +L Sbjct: 462 YLVYLSAKGAGDGLWKLQDGASTELWSQPGARIAGAPAVRRDGRTIAFWTREGGRT--RL 519 Query: 419 YSIDLNGRNETLINTPAY-ASDPQWVG 444 +D +G ++ + P W+ Sbjct: 520 RVVDADGTGGRVVTDALQLSGAPAWMP 546 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 21/172 (12%) Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 L LT+ + +A+ S D + F SDR G+ +++ Q + +++ Sbjct: 157 PLSGARFVPLTDFGGVEQAAAISADGRFVAFLSDRAGRVDVWLTQVGSGQFQDLTRGSAP 216 Query: 348 SYFDPV-----WSPQGDLIAF-----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 +P +SP G L+ F T S I + G R +E + A W Sbjct: 217 ELVNPSIRTLGFSPDGALVTFWARGRTGSSPPDIGIWAVPLLGGPPRPYLEGAAEYA--W 274 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE---TLINTPA--YASDPQWVG 444 + G L+ GD + GR + + + P+ +A W Sbjct: 275 TRDGTRLVHHTPGPGDPMY----VSEAGRPQDARRIFSAPSGLHAHFQVWSP 322 >gi|8101030|gb|AAF72523.1|AF248951_4 MdsD protein [Prevotella sp. RS2] Length = 1073 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 28/200 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + + D I++V + T++LT + +SPDS I F S RE Sbjct: 30 AISPDGSQIAFAYKGD----IWTVPVAGGQTKQLTTHSAYDSYPVWSPDSKNIAFVSTRE 85 Query: 324 GKEQLYVMQSNGSDQKRISQ-----------DKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +++M G R++ D + F+ P I F +G Sbjct: 86 GSRDVWIMPREGGAPHRLTTSSGSETPVAFLDNDHVLFESQVMPTAQSIFFA--NGNFPQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF---------SRKKDGDTGSKLYSIDL 423 I + +G + + L + L+AP+ + G L + + ++ + Sbjct: 144 IYSVSVNGGRPK-LYSELTLKAPSINSKGDVLYYDQKGSEDQWRKHHTSPITRDIWLLR- 201 Query: 424 NGRNETLINTPAYASDPQWV 443 +G+ L + DP W Sbjct: 202 DGKYRKLTSFAGEDRDPVWG 221 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 38/303 (12%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D Y ++ E G FN V + V G K L G +R+LT + D L F Sbjct: 224 DAYYYLSEEDGTFN-----VYRASVDGTAKQQL--THFKGNPVRFLTRANDGTL---SFG 273 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + + ++ + V + RID R + S NGK + D Sbjct: 274 YDGELYTLREGEEPRKVSVSVTADRIDAELDRQLRYSG-ASEIAVSPNGKEIAFVMHGD- 331 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 +Y + N T+++T+T S +S D IV+ ++R G Q+Y + Sbjct: 332 ---VYVTSVDYNTTKQITDTPEQERSIDFSSDGRSIVYAAERNGLWQIYQSTIKNKKEDL 388 Query: 341 ISQDKEA----------SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + E + F P++SP G +AF + ++ + + + R L++ Sbjct: 389 FTYATEIEEEQLVKSNKTSFQPMYSPDGKSVAFLE---DRTRLCAVDVKSHKVRQLMDGK 445 Query: 391 NL-------QAPTWSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLINTPAYASDP 440 + Q +WSP R L+ S G ++ L D G + N+ ++ Sbjct: 446 YMYSYSDGDQWFSWSPDSRWLLASYIGTGGWNNRDIALVPADGKGEIRNITNSGYNDTNG 505 Query: 441 QWV 443 +WV Sbjct: 506 KWV 508 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 36/242 (14%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + SP+ ++A+A DI V + K++ + P +S + K Sbjct: 25 WMRHSAISPDGSQIAFAY--KGDIWTVPV----AGGQTKQLTTHSAYDSYPVWSPDSKNI 78 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD----------R 322 ++ + D++ + + A RLT + ++ D+ ++FES Sbjct: 79 AFVSTREGSRDVWIMPREGGAPHRLTTSSGSETPVAFL-DNDHVLFESQVMPTAQSIFFA 137 Query: 323 EGK-EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----------TKFSGEK 370 G Q+Y + NG K S E + P + +GD++ + S Sbjct: 138 NGNFPQIYSVSVNGGRPKLYS---ELTLKAPSINSKGDVLYYDQKGSEDQWRKHHTSPIT 194 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 I +++ DG +L + P W +G + + ++DG +Y ++G + Sbjct: 195 RDIWLLR-DGKYRKLTSFAGEDRDPVWG-NGDAYYYLSEEDGTF--NVYRASVDGTAKQQ 250 Query: 431 IN 432 + Sbjct: 251 LT 252 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/384 (10%), Positives = 98/384 (25%), Gaps = 137/384 (35%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K + + G + LT P +SP+ + +A+ + + R + R Sbjct: 41 AYKGDIWTVPVAGGQTKQLTT-HSAYDSYPVWSPDSKNIAFVSTREGS--RDVWIMPREG 97 Query: 248 RAPKRIGNFRSMILAPRF------------SSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 AP R+ F + + IYSV + Sbjct: 98 GAPHRLTTSSGSETPVAFLDNDHVLFESQVMPTAQSIFFA--NGNFPQIYSVSVNGGRPK 155 Query: 295 --------------------------------------------------ERLTNTLFIN 304 +LT+ + Sbjct: 156 LYSELTLKAPSINSKGDVLYYDQKGSEDQWRKHHTSPITRDIWLLRDGKYRKLTSFAGED 215 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS---------------------- 342 + + + S+ +G +Y +G+ +++++ Sbjct: 216 RDPVWG-NGDAYYYLSEEDGTFNVYRASVDGTAKQQLTHFKGNPVRFLTRANDGTLSFGY 274 Query: 343 -------------------------------QDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q + + + SP G IAF Sbjct: 275 DGELYTLREGEEPRKVSVSVTADRIDAELDRQLRYSGASEIAVSPNGKEIAFVMHGD--- 331 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG----------DTGSKLYS 420 + V D + + + + + + +S GRS++++ +++G + L++ Sbjct: 332 -VYVTSVDYNTTKQITDTPEQERSIDFSSDGRSIVYAAERNGLWQIYQSTIKNKKEDLFT 390 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 E L+ + + P + Sbjct: 391 YATEIEEEQLVKSNKTSFQPMYSP 414 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 ++ F+P +SP+ + VA+ + V R K + ++ +S + Sbjct: 403 SNKTSFQPMYSPDGKSVAFLEDRTRLCAVDVKSHKVRQLMDGKYMYSYSDGDQWFSWSPD 462 Query: 269 GKRALISVQKDE---AMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDREG 324 + L S DI V +TN+ + + + + ++F+SDR G Sbjct: 463 SRWLLASYIGTGGWNNRDIALVPADGKGEIRNITNSGYNDTNGKWVLGGKAMLFQSDRAG 522 Query: 325 KE-----------QLYVMQSNGSDQKRISQDKEASY 349 + + DQ R+S+++ A + Sbjct: 523 YRSHGSWGTEDDAYIMFFDVDAYDQFRMSKEEYARW 558 >gi|196230985|ref|ZP_03129845.1| peptidase S41 [Chthoniobacter flavus Ellin428] gi|196224815|gb|EDY19325.1| peptidase S41 [Chthoniobacter flavus Ellin428] Length = 1140 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 92/250 (36%), Gaps = 35/250 (14%) Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 ++L P S + ++A+ + + + R+ R + PRFS +G + Sbjct: 31 RMLQMPAVS--KSEIAFVYGGN------IWIAPKAGGTALRLSTPRGVQQFPRFSPDGAK 82 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------DREGK 325 + D +DIY + + +R+T+ + PD +++ES DR G Sbjct: 83 LAFTGNYDGNVDIYVMPVGGGEPQRITHHGGSERLLGWYPDGQSLLYESHMMAFTDRVG- 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT-----------KFSGEKFAIG 374 QL+ + + G +++ A SP G +AFT G I Sbjct: 142 -QLFKVPAQGGLPEKL---PVAYGEFGAISPDGHTLAFTPISTDFATWKRYRGGMAPDIW 197 Query: 375 VMKKD-GSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN- 432 + + + E + ++N P W G +L F +D +++ + + + Sbjct: 198 LFDLEKKTAENVTHNEANDSQPMWH--GETLYFISDRDEHERDNIWAYNTRTKETREVTH 255 Query: 433 -TPAYASDPQ 441 T + P Sbjct: 256 FTESDVHFPS 265 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 91/324 (28%), Gaps = 80/324 (24%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV--YLMDTRIDRA 249 + VM G + +T + P+ Q + Y ++ RV Sbjct: 94 DIYVMPVGGGEPQRITHHGGSERLL-GWYPDGQSLLYESHMMAFTDRVGQLFKVPAQGGL 152 Query: 250 PKRIGNFRSMILAPRFSSNGKRALIS-----------VQKDEAMDIYSVDLQSNATERLT 298 P+++ A S +G + + A DI+ DL+ E +T Sbjct: 153 PEKLPVAYGEFGA--ISPDGHTLAFTPISTDFATWKRYRGGMAPDIWLFDLEKKTAENVT 210 Query: 299 NTLFINISASYSPDSSQIVFESDREG--KEQLYVMQSNGSDQKRISQDKEASYFDP---- 352 + + + + F SDR+ ++ ++ + + + ++ E+ P Sbjct: 211 HNEANDSQPMW--HGETLYFISDRDEHERDNIWAYNTRTKETREVTHFTESDVHFPSVGP 268 Query: 353 -------------------------------------------------VWSPQGDLIAF 363 SP G F Sbjct: 269 DDLVFENDGRLYVLDLGTEQMHEVKIKVATDRATLRPRVQNVAGYVRNAAISPTGKRALF 328 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 I + + R + S + + P WSP GR + + K G+ + Sbjct: 329 EARGD----IFSVPAEHGIVRDITSTSGVAERNPAWSPDGRWIAYFSDKTGEYELTIRPS 384 Query: 422 DLNGRNETLINTPAYAS-DPQWVG 444 D G ETL + PQW Sbjct: 385 DKAGGEETLTHLGRGFRYQPQWSP 408 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 102/316 (32%), Gaps = 31/316 (9%) Query: 143 KFFSSPASWRKIAHTISDDIY-QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGA 201 + + R++ H D++ S+ + F + + + + + D A Sbjct: 242 AYNTRTKETREVTHFTESDVHFPSVGPDDLVFENDGRLYVLDLGTEQMHEVKIKVATDRA 301 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI- 260 +R + + SP ++ + DI V + I + + Sbjct: 302 TLRPRVQNVAGYVRNAAISPTGKRALF--EARGDIFSV----PAEHGIVRDITSTSGVAE 355 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQ-SNATERLTN-TLFINISASYSPDSSQIVF 318 P +S +G+ K ++ + E LT+ +SPD+ +IVF Sbjct: 356 RNPAWSPDGRWIAYFSDKTGEYELTIRPSDKAGGEETLTHLGRGFRYQPQWSPDAKKIVF 415 Query: 319 ESDREGKEQLYVMQSNGSDQKRI-----SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 + ++++ + + + + + F WS + + + Sbjct: 416 V---DQAMRIHLYDMETKQVTEVGRQLWAYEGDLARFRVSWSSDSRWFTYAADRENRQS- 471 Query: 374 GVMKKDGSQERLLVEDS---NLQAPTWSPSGRSLIFSRKK------DGDTGSKLYSIDLN 424 ++ D ++R L S + P + P GR L + K+ + +Y+ N Sbjct: 472 AIVVYDTHEKRELAATSGFYDDDMPVFDPDGRYLYYRSKRVFEPIYSESDNTWIYT---N 528 Query: 425 GRNETLINTPAYASDP 440 G + + P Sbjct: 529 GESLVALPLRKDVPSP 544 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 100/263 (38%), Gaps = 35/263 (13%) Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 VS+S ++ + ++ + + G L+ R + PRFSP+ K+A+ D + + + Sbjct: 38 VSKSEIAFVYGGNIWIAPKAGGTALRLSTPR-GVQQFPRFSPDGAKLAFTGNYDGN-VDI 95 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMDIYSVDLQSNATE 295 Y+M P+RI + + +G+ L D ++ V Q E Sbjct: 96 YVMPVG-GGEPQRITHHGGSERLLGWYPDGQSLLYESHMMAFTDRVGQLFKVPAQGGLPE 154 Query: 296 RLTNTLFINISASYSPDSSQIVFE----------SDREG-KEQLYVMQSNGSDQKRISQD 344 +L + + SPD + F R G +++ + ++ + Sbjct: 155 KL--PVAYGEFGAISPDGHTLAFTPISTDFATWKRYRGGMAPDIWLFDLEKKTAENVTHN 212 Query: 345 KEASYFDPVWSPQGDLIAFTKFSG--EKFAIGVMKKDGSQERLLVE--DSNLQAPTWSPS 400 EA+ P+W G+ + F E+ I + R + +S++ P+ P Sbjct: 213 -EANDSQPMW--HGETLYFISDRDEHERDNIWAYNTRTKETREVTHFTESDVHFPSVGPD 269 Query: 401 GRSLIFSRKKDGDTGSKLYSIDL 423 L+F + +LY +DL Sbjct: 270 --DLVF------ENDGRLYVLDL 284 >gi|88857110|ref|ZP_01131753.1| hypothetical protein PTD2_01081 [Pseudoalteromonas tunicata D2] gi|88820307|gb|EAR30119.1| hypothetical protein PTD2_01081 [Pseudoalteromonas tunicata D2] Length = 673 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 99/277 (35%), Gaps = 23/277 (8%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S V+ + +L ++D ++ S + PR+SP+ KVA+ + +++ Sbjct: 54 SNDVMKDSTRRNLWLVDTK-TGVQSPLFSDENQYMSPRWSPDGSKVAFLSNASGST-QIH 111 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTN 299 + +R + S + +S +GK S + ++ I + + + + Sbjct: 112 VHYLTENR-TALLSQLESGVSGLTWSPDGKWLAFSQLVAEKPAVIAKMPAKPKGAKW--S 168 Query: 300 TLFINIS-ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 I I A Y D +V + G ++VM S G ++++ W Sbjct: 169 EPAIVIDKAYYQADGQGLV----KPGYRHVFVMPSEGGTPRQLTYGNYHHSGKLAWRSDS 224 Query: 359 DLIAFTKFSGEKFA-------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 + F+ + + + + G +L + +P +S G+ L + + Sbjct: 225 KALVFSANRFDDWEYKRLESDLFEIDFSGKLTQLTDAPGSEHSPEFSKDGKQLAYLSASN 284 Query: 412 G---DTGSKLYSIDLNGRNETLINT--PAYASDPQWV 443 KL + + + LI +DP W+ Sbjct: 285 ELNPYRNHKLAIMAWSSKESKLIAADFDRSIADPTWL 321 Score = 96.6 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 54/232 (23%) Query: 265 FSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 S +G++ + ++ +++ VD ++ L + +S +SPD S++ F Sbjct: 41 LSPSGQQVVYIRNSNDVMKDSTRRNLWLVDTKTGVQSPLFSDENQYMSPRWSPDGSKVAF 100 Query: 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF------------ 366 S+ G Q++V ++ + E+ WSP G +AF++ Sbjct: 101 LSNASGSTQIHVHYL-TENRTALLSQLESGVSGLTWSPDGKWLAFSQLVAEKPAVIAKMP 159 Query: 367 ----------------------------SGEKFAIGVMKKDGSQERLLVEDSNLQAP--T 396 + VM +G R L + + Sbjct: 160 AKPKGAKWSEPAIVIDKAYYQADGQGLVKPGYRHVFVMPSEGGTPRQLTYGNYHHSGKLA 219 Query: 397 WSPSGRSLIFSRKKDGDT-----GSKLYSIDLNGRNETLINTPAYASDPQWV 443 W ++L+FS + D S L+ ID +G+ L + P P++ Sbjct: 220 WRSDSKALVFSANRFDDWEYKRLESDLFEIDFSGKLTQLTDAPGSEHSPEFS 271 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 106/344 (30%), Gaps = 75/344 (21%) Query: 158 ISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 SD+ Q ++ S++ F+S + S I + N L + + Sbjct: 80 FSDE-NQYMSPRWSPDGSKVAFLSNASGSTQIH-----VHYLTENRTALLSQLESGVSGL 133 Query: 218 RFSPNQQKVAYATYDDEDI--------------------------------------LRV 239 +SP+ + +A++ E R Sbjct: 134 TWSPDGKWLAFSQLVAEKPAVIAKMPAKPKGAKWSEPAIVIDKAYYQADGQGLVKPGYRH 193 Query: 240 YLMDTRIDRAPKRIGNFRSMILAP-RFSSNGKRALISVQKDEAM-------DIYSVDLQS 291 + P+++ + S+ K + S + + D++ +D S Sbjct: 194 VFVMPSEGGTPRQLTYGNYHHSGKLAWRSDSKALVFSANRFDDWEYKRLESDLFEIDF-S 252 Query: 292 NATERLTNTLFINISASYSPDSSQIVFES-----DREGKEQLYVMQSNGSDQKRISQDKE 346 +LT+ S +S D Q+ + S + +L +M + + K I+ D + Sbjct: 253 GKLTQLTDAPGSEHSPEFSKDGKQLAYLSASNELNPYRNHKLAIMAWSSKESKLIAADFD 312 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG--SQERLLVEDSNLQAPTWSPSGRSL 404 S DP W + +A + K + + G + + + L P S G Sbjct: 313 RSIADPTWLS-SNTLAISYDDFGKRKLATITTKGKITDLTDTLSGTTLGRPYIS--GE-- 367 Query: 405 IFSRKKDGD---------TGSKLYSIDLNGRNETLINTPAYASD 439 FS G+ S + +G+ + L + D Sbjct: 368 -FSANYSGNIAFTHGTALRPSDVAVATTSGKVKQLTHLNDDLLD 410 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 14/104 (13%) Query: 355 SPQGDLIAFTKFSGEKF------AIGVMKKDGSQERLLVEDSN-LQAPTWSPSGRSLIFS 407 SP G + + + S + + ++ + L D N +P WSP G + F Sbjct: 42 SPSGQQVVYIRNSNDVMKDSTRRNLWLVDTKTGVQSPLFSDENQYMSPRWSPDGSKVAFL 101 Query: 408 RKKDGDTGSKLYSIDLNGRNETL------INTPAYASDPQWVGF 445 G T ++ + N R L ++ ++ D +W+ F Sbjct: 102 SNASGSTQIHVHYLTEN-RTALLSQLESGVSGLTWSPDGKWLAF 144 >gi|149276299|ref|ZP_01882443.1| hypothetical protein PBAL39_01227 [Pedobacter sp. BAL39] gi|149232819|gb|EDM38194.1| hypothetical protein PBAL39_01227 [Pedobacter sp. BAL39] Length = 1046 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 13/169 (7%) Query: 255 NFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQSNA-TERLT---------NTLFI 303 N +M +AP S +GK +KD +D++ D ++ +L+ + F+ Sbjct: 281 NAGNMNVAPAISPDGKFLAFLSEKDLFGIDLFLADAKTGKILRKLSSQISNSHIDDFNFL 340 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQ-SNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++SPDS Q F +G+ QL V+ ++G R + A + + WS GD IA Sbjct: 341 ESAGAWSPDSKQFAFSIFSKGRNQLMVIDVASGKVVLRAAMGDVAQFGNLSWSTNGDDIA 400 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKK 410 F+ + I Q + +D + AP++SP G LIFS + Sbjct: 401 FSGMVEGQSDIFSYNLKTKQVTQITDDIYSDYAPSYSPDGSKLIFSSDR 449 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 87/248 (35%), Gaps = 28/248 (11%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI-------- 260 + + P SP+ + +A+ + D + ++L D + + +++ + S Sbjct: 281 NAGNMNVAPAISPDGKFLAFLSEKDLFGIDLFLADAKTGKILRKLSSQISNSHIDDFNFL 340 Query: 261 -LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI---SASYSPDSSQI 316 A +S + K+ S+ + +D+ S L + + S+S + I Sbjct: 341 ESAGAWSPDSKQFAFSIFSKGRNQLMVIDVASGKVV-LRAAMGDVAQFGNLSWSTNGDDI 399 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE------- 369 F EG+ ++ +I+ D S + P +SP G + F+ Sbjct: 400 AFSGMVEGQSDIFSYNLKTKQVTQIT-DDIYSDYAPSYSPDGSKLIFSSDRASINSGTKD 458 Query: 370 -----KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 I + + + + +N +S + + F +DG LY +L Sbjct: 459 AVHPLNMTIYDISSKTLSDVPVFKGANNLNAMFSGDSKRIFFLSNRDGFR--NLYEYNLE 516 Query: 425 GRNETLIN 432 ++ + Sbjct: 517 NQDLKQLT 524 Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 82/212 (38%), Gaps = 19/212 (8%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA-PRFSSNGKRALISV 276 +SP+ ++ A++ + ++ ++D + R +S+NG S Sbjct: 345 AWSPDSKQFAFSIFSKGRN-QLMVIDVASGKVVLRAAMGDVAQFGNLSWSTNGDDIAFSG 403 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----EGKE------ 326 + DI+S +L++ ++T+ ++ + + SYSPD S+++F SDR G + Sbjct: 404 MVEGQSDIFSYNLKTKQVTQITDDIYSDYAPSYSPDGSKLIFSSDRASINSGTKDAVHPL 463 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 + + + + K A+ + ++S I F + + + L Sbjct: 464 NMTIYDISSKTLSDVPVFKGANNLNAMFSGDSKRIFFLSNRDGFRNLYEYNLENQDLKQL 523 Query: 387 VE------DSNLQAPTWSPS-GRSLIFSRKKD 411 + +P S S +++S + Sbjct: 524 TDYFTGISGITEFSPAISVSRNDDIVYSYYRS 555 >gi|83945669|ref|ZP_00958014.1| Acylaminoacyl-peptidase [Oceanicaulis alexandrii HTCC2633] gi|83850870|gb|EAP88730.1| Acylaminoacyl-peptidase [Oceanicaulis alexandrii HTCC2633] Length = 682 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 113/319 (35%), Gaps = 73/319 (22%) Query: 177 ILFVSESV--VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 I++ V V+ + L MD DG R+LT ++SP+ +++A+ D Sbjct: 50 IVYTRTRVDAVNDGFASELWAMDSDGERHRFLTRGSSA-----QWSPDGRRLAFIRGVDG 104 Query: 235 DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ----------------- 277 ++++ + A +I + + I R+S +G+ + Sbjct: 105 HT-QLFVRWMDAEGAESQITHEQLTIKQFRWSPDGESIAFLAETPLEPAMQISLPARPEG 163 Query: 278 ----------------------KDEAMDIYSVDLQSNATERLTNTLFINI---------S 306 K ++ V + ++T + S Sbjct: 164 AQWTADPLVTDRMNYRIDRQGLKSGYDHLFVVSAEGGTPRQITAGDWDATSKFSGVGAGS 223 Query: 307 ASYSPDSSQIVFES-------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 ++PDS+ +VF+ + ++ + D ++ D + ++ +P SP G Sbjct: 224 FDWTPDSASLVFDGILDPEDEAASRQSDIHRVVLASGDITTLT-DGDGNWANPRVSPNGR 282 Query: 360 LIAFTKFSGEKF-----AIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDG 412 + ++ + + + M DGS +R+L D + PTWS R L ++ G Sbjct: 283 YVVYSGHAASEVNYPASHLMRMDLDGSDKRVLRADLPDGVGNPTWSDDSRGLYYTMNYHG 342 Query: 413 DTGSKLYSIDLNGRNETLI 431 T L+ I G + + Sbjct: 343 ST--DLHYITTGGSDRQIT 359 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 95/289 (32%), Gaps = 63/289 (21%) Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 P+ +P+ + + Y + + + + + F + + ++S +G+R Sbjct: 41 PQIAPDGEDIVYTRTRVDAVNDGFASELWAMDSDGERHRFLTRGSSAQWSPDGRRLAFIR 100 Query: 277 QKDEAMDIYS--VDLQSNATERLTNTLFINISASYSPDSSQIVF---------------- 318 D ++ +D + A ++T+ +SPD I F Sbjct: 101 GVDGHTQLFVRWMDAE-GAESQITHEQLTIKQFRWSPDGESIAFLAETPLEPAMQISLPA 159 Query: 319 ------------ESDR-----------EGKEQLYVMQSNGSDQKRISQD--------KEA 347 +DR G + L+V+ + G ++I+ Sbjct: 160 RPEGAQWTADPLVTDRMNYRIDRQGLKSGYDHLFVVSAEGGTPRQITAGDWDATSKFSGV 219 Query: 348 SYFDPVWSPQGDLIAFTKF-------SGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSP 399 W+P + F + + I + L + D N P SP Sbjct: 220 GAGSFDWTPDSASLVFDGILDPEDEAASRQSDIHRVVLASGDITTLTDGDGNWANPRVSP 279 Query: 400 SGRSLIFSRKKDGDTG---SKLYSIDLNGRNETLI--NTPAYASDPQWV 443 +GR +++S + S L +DL+G ++ ++ + P +P W Sbjct: 280 NGRYVVYSGHAASEVNYPASHLMRMDLDGSDKRVLRADLPDGVGNPTWS 328 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 46/323 (14%), Positives = 90/323 (27%), Gaps = 64/323 (19%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA------ 229 R+ F+ V G + + MD +GA + F R+SP+ + +A+ Sbjct: 95 RLAFI--RGVDGHTQLFVRWMDAEGAESQITHEQLTIKQF--RWSPDGESIAFLAETPLE 150 Query: 230 -------------------------------TYDDEDILRVYLMDTRIDRAPKRIGNFRS 258 + + + P++I Sbjct: 151 PAMQISLPARPEGAQWTADPLVTDRMNYRIDRQGLKSGYDHLFVVSAEGGTPRQITAGDW 210 Query: 259 MILAP---------RFSSNGKRALISVQKDEAM-------DIYSVDLQSNATERLTNTLF 302 + ++ + + D DI+ V L S LT+ Sbjct: 211 DATSKFSGVGAGSFDWTPDSASLVFDGILDPEDEAASRQSDIHRVVLASGDITTLTDGDG 270 Query: 303 INISASYSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 + SP+ +V+ L M +GSD++ + D +P WS Sbjct: 271 NWANPRVSPNGRYVVYSGHAASEVNYPASHLMRMDLDGSDKRVLRADLPDGVGNPTWSDD 330 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSK 417 + +T + + GS ++ L + S G + + + Sbjct: 331 SRGLYYTMNYHGSTDLHYITTGGSDRQITEGMHRLYVSSISEDG--VAAAVHSAPQSTPN 388 Query: 418 LYSIDLNGRNETLINTPAYASDP 440 + ID G L + D Sbjct: 389 VALIDRRGDIRLLTDLNGDILDG 411 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 81/246 (32%), Gaps = 65/246 (26%) Query: 257 RSMILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +P+ + +G+ + + + A +++++D LT SA +S Sbjct: 35 WEQAGSPQIAPDGEDIVYTRTRVDAVNDGFASELWAMDSDGERHRFLTRGS----SAQWS 90 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------- 363 PD ++ F +G QL+V + + ++ + WSP G+ IAF Sbjct: 91 PDGRRLAFIRGVDGHTQLFVRWMDAEGAESQITHEQLTIKQFRWSPDGESIAFLAETPLE 150 Query: 364 --------TKFSGEKF------------------------AIGVMKKDGSQERLLV---- 387 + G ++ + V+ +G R + Sbjct: 151 PAMQISLPARPEGAQWTADPLVTDRMNYRIDRQGLKSGYDHLFVVSAEGGTPRQITAGDW 210 Query: 388 ------EDSNLQAPTWSPSGRSLIF-----SRKKDGDTGSKLYSIDL-NGRNETLINTPA 435 + W+P SL+F + S ++ + L +G TL + Sbjct: 211 DATSKFSGVGAGSFDWTPDSASLVFDGILDPEDEAASRQSDIHRVVLASGDITTLTDGDG 270 Query: 436 YASDPQ 441 ++P+ Sbjct: 271 NWANPR 276 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 350 FDPVWSPQGDLIAFTK------FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 P +P G+ I +T+ G + M DG + R L S+ Q WSP GR Sbjct: 39 GSPQIAPDGEDIVYTRTRVDAVNDGFASELWAMDSDGERHRFLTRGSSAQ---WSPDGRR 95 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L F R DG T + +D G + + +W Sbjct: 96 LAFIRGVDGHTQLFVRWMDAEGAESQITHEQLTIKQFRWSP 136 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 32/241 (13%) Query: 155 AHTI--SDDIYQSITGEKGDFNSRIL-----FVSESVVSGIIKNS----LCVMDRDGANI 203 H + + ++T G++ + + +V S + N L MD DG++ Sbjct: 252 IHRVVLASGDITTLTDGDGNWANPRVSPNGRYVVYSGHAASEVNYPASHLMRMDLDGSDK 311 Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 R L + P +S + + + Y Y+ D ++I + Sbjct: 312 RVLRADLPDGVGNPTWSDDSRGLYYTMNYHGSTDLHYITTGGSD---RQITEGMHRLYVS 368 Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI--------NISASYSP--DS 313 S +G A + ++ +D + LT+ +I + P D Sbjct: 369 SISEDGVAAAVHSAPQSTPNVALIDRR-GDIRLLTDLNGDILDGVELGDIEEIWYPSFDG 427 Query: 314 SQ----IVFESDREGKEQL-YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 Q I++ D + E V+ +G + +Y W+ G ++ +T G Sbjct: 428 EQIQGWIIYPPDFDPNETYPMVLNIHGGPHA--MYGVDFNYRFQEWAANGYVVLYTNPRG 485 Query: 369 E 369 Sbjct: 486 S 486 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK----DGDTGSKLYSIDLNGRNETLIN 432 + D Q + +P +P G ++++R + + S+L+++D +G + Sbjct: 23 RPDTLQLEHYFDWEQAGSPQIAPDGEDIVYTRTRVDAVNDGFASELWAMDSDGERHRFLT 82 Query: 433 TPAYASDPQWVG 444 + A QW Sbjct: 83 RGSSA---QWSP 91 >gi|153829269|ref|ZP_01981936.1| tricorn protease [Vibrio cholerae 623-39] gi|148875234|gb|EDL73369.1| tricorn protease [Vibrio cholerae 623-39] Length = 890 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ K+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGLKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +S + + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + A I+ V Q LT + + + +SPDS I F +DR Sbjct: 45 ALSPDGLKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 219 WSPLTGKHTQITTFRGEDRNPVWSA 243 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 98/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 113 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 170 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ + Sbjct: 171 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHT 227 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 287 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 288 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 347 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 348 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 407 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 408 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|158341565|ref|YP_001522729.1| WD-containing repeat protein [Acaryochloris marina MBIC11017] gi|158311806|gb|ABW33415.1| WD repeat protein [Acaryochloris marina MBIC11017] Length = 1293 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 86/256 (33%), Gaps = 21/256 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++VVSG + N+L V D + + SP+ Q V A+YD + + Sbjct: 845 QTVVSGSLDNTLKVWDLATGQEQRTLTGHTSPVEGVSISPDGQTVVSASYDH----TLKV 900 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + S +G+ ++S D + ++ DL + +R LT Sbjct: 901 WDLATGEEQHTLTGHTDSVTGVSISPDGQT-VVSASYDHTLKVW--DLATGEEQRTLTGH 957 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S SPD +V S + L V +++R S + SP G Sbjct: 958 TSTVTGVSISPDGQTVVSAS---WGKTLKVWDLATGEEQRTLTGHTNSVYGVSISPDGQT 1014 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRKKDGDTGSKL 418 + + V +E+ + + SP G++++ G L Sbjct: 1015 VVSGSSDKT---LKVWDLATGEEQRTLTGHTNSVYGVSISPDGQTVV-----SGSLDKTL 1066 Query: 419 YSIDLNGRNETLINTP 434 DL E T Sbjct: 1067 KVWDLATGEEQRTLTG 1082 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 20/259 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++VVSG + N+L V D + + SP+ Q V ++D + + Sbjct: 761 QTVVSGSLDNTLKVWDLATGEEQRTLTGHTSPVEGVSISPDGQTVVSGSWDK----TLKV 816 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + S +G+ ++S D + ++ DL + +R LT Sbjct: 817 WDLATGEEQRTLTGHTNSVYGVSISPDGQT-VVSGSLDNTLKVW--DLATGQEQRTLTGH 873 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S SPD +V S L V +++ S SP G Sbjct: 874 TSPVEGVSISPDGQTVVSASY---DHTLKVWDLATGEEQHTLTGHTDSVTGVSISPDGQT 930 Query: 361 IAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + V +E+ L S + + SP G++++ + K+ Sbjct: 931 VVSASYD---HTLKVWDLATGEEQRTLTGHTSTVTGVSISPDGQTVVSASW---GKTLKV 984 Query: 419 YSIDLNGRNETLINTPAYA 437 + + G + + + Sbjct: 985 WDL-ATGEEQRTLTGHTNS 1002 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 28/309 (9%) Query: 133 VKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNS 192 V+ ++ P R +Y + + + + Sbjct: 634 VQSGLRLSSHVLNQHPEQLR-------SQLYGRLLSQDSPDVTALTQSLAQGPEECWIRC 686 Query: 193 LCV-MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L +++ G + + SP+ Q V A+YD + + D + Sbjct: 687 LFPHLNQAGGALVRTLSGHTSNVRGVSISPDGQTVVSASYDH----TLKVWDLATGEEQR 742 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYS 310 + S + S +G+ ++S D + ++ DL + +R LT S S Sbjct: 743 TLTGHTSPVEGVSISPDGQT-VVSGSLDNTLKVW--DLATGEEQRTLTGHTSPVEGVSIS 799 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD +V S + L V +++R S + SP G + Sbjct: 800 PDGQTVVSGS---WDKTLKVWDLATGEEQRTLTGHTNSVYGVSISPDGQTVVSGSLDNT- 855 Query: 371 FAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + V QE+ + ++ + SP G++++ + D K++ + G + Sbjct: 856 --LKVWDLATGQEQRTLTGHTSPVEGVSISPDGQTVVSASY---DHTLKVWDL-ATGEEQ 909 Query: 429 TLINTPAYA 437 + + Sbjct: 910 HTLTGHTDS 918 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 20/255 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++VVS ++L V D + + SP+ Q V + D+ + + Sbjct: 719 QTVVSASYDHTLKVWDLATGEEQRTLTGHTSPVEGVSISPDGQTVVSGSLDN----TLKV 774 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + S + S +G+ ++S D+ + ++ DL + +R LT Sbjct: 775 WDLATGEEQRTLTGHTSPVEGVSISPDGQT-VVSGSWDKTLKVW--DLATGEEQRTLTGH 831 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S SPD +V S L V ++R + SP G Sbjct: 832 TNSVYGVSISPDGQTVVSGSL---DNTLKVWDLATGQEQRTLTGHTSPVEGVSISPDGQT 888 Query: 361 IAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + + V +E+ L ++ + SP G++++ + D K+ Sbjct: 889 VVSASYD---HTLKVWDLATGEEQHTLTGHTDSVTGVSISPDGQTVVSASY---DHTLKV 942 Query: 419 YSIDLNGRNETLINT 433 + + G + + Sbjct: 943 WDL-ATGEEQRTLTG 956 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 109/340 (32%), Gaps = 51/340 (15%) Query: 82 ISQDSFKQKITNPDSIPRFQDW---------NSLGAQVLVTGRVIKEGKDRLRVE----- 127 +S Q + + + W G VTG V + V Sbjct: 922 VSISPDGQTVVSASYDHTLKVWDLATGEEQRTLTGHTSTVTG-VSISPDGQTVVSASWGK 980 Query: 128 -FRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 ++WD+ ++ HT + +Y G ++VVS Sbjct: 981 TLKVWDLATGEE-----------QRTLTGHT--NSVYGVSISPDG----------QTVVS 1017 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G +L V D + ++ SP+ Q V + D + + D Sbjct: 1018 GSSDKTLKVWDLATGEEQRTLTGHTNSVYGVSISPDGQTVVSGSLDK----TLKVWDLAT 1073 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINI 305 + + S + S +G+ ++S D+ + ++ DL + +R LT Sbjct: 1074 GEEQRTLTGHTSPVEGVSISPDGQT-VVSGSWDKTLKVW--DLATGEEQRTLTGHTNSVY 1130 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 S SPD +V S + L V +++R S SP G + + Sbjct: 1131 GVSISPDGQTVVSGSS---DKTLKVWDLATGEEQRTLTGHTVSVRSVSISPDGQTVV-SG 1186 Query: 366 FSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 F + + + Q L ++ + SP G++++ Sbjct: 1187 FWDKTLKVWDLATGEEQHTLTGHTDSVTGVSISPDGQTVV 1226 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 87/246 (35%), Gaps = 20/246 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 ++VVSG + +L V D + + SP+ Q V ++D + + Sbjct: 1055 QTVVSGSLDKTLKVWDLATGEEQRTLTGHTSPVEGVSISPDGQTVVSGSWDK----TLKV 1110 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D + + + + S +G+ ++S D+ + ++ DL + +R LT Sbjct: 1111 WDLATGEEQRTLTGHTNSVYGVSISPDGQT-VVSGSSDKTLKVW--DLATGEEQRTLTGH 1167 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S S SPD +V + L V +++ S SP G Sbjct: 1168 TVSVRSVSISPDGQTVV---SGFWDKTLKVWDLATGEEQHTLTGHTDSVTGVSISPDGQT 1224 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERL-LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLY 419 + + + V E + + Q + GR++I GD G +LY Sbjct: 1225 VVSGSWDKT---LKVWDLATGMEVMSFTGEGGFQCCEIALDGRTII-----AGDAGGQLY 1276 Query: 420 SIDLNG 425 + L G Sbjct: 1277 FLRLEG 1282 >gi|326801004|ref|YP_004318823.1| peptidase S41 [Sphingobacterium sp. 21] gi|326551768|gb|ADZ80153.1| peptidase S41 [Sphingobacterium sp. 21] Length = 1090 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 87/253 (34%), Gaps = 34/253 (13%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 +K L V + + S L P SP+ + + + ++ RV + Sbjct: 7 NLKFLLAVFFFLSYSYQSQAQSEALWLRYPAISPDGKTIVFGY--QGNLYRV----SASG 60 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 A + S + P +S +G+ + ++ D+Y + + RLT + Sbjct: 61 GAATALTVGSSHSMMPVWSRDGQFIAFANDRNGNFDVYVMPASGGKSTRLTYNSANDYPY 120 Query: 308 SYSPDSSQIVFESDREGK------------EQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 +S D+ +++F S R+ + LY + NG +S + ++ Sbjct: 121 DFSIDNKEVIFGSARQAPAESTRFPSLRLFQNLYRVTINGGRPLLVSAAGIENA---HFN 177 Query: 356 PQGDLIAF------------TKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGR 402 G L+ F S I + + L E+ + P +S G+ Sbjct: 178 QDGSLLVFQDRKGYEDPWRKHHTSSVTRDIWLYNLRTNTYEALTNEEIEHREPVFSHDGQ 237 Query: 403 SLIFSRKKDGDTG 415 + + +KDG Sbjct: 238 FVYYLNEKDGTLN 250 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 53/345 (15%), Positives = 115/345 (33%), Gaps = 65/345 (18%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISD------------DIYQSITGEKGDFNSRIL---- 178 D ++ + WRK H S + Y+++T E+ + + Sbjct: 179 DGSLLVFQDRKGYEDPWRK--HHTSSVTRDIWLYNLRTNTYEALTNEEIEHREPVFSHDG 236 Query: 179 -FV----SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYA---- 229 FV + + K + + D + LT + S + +A+ Sbjct: 237 QFVYYLNEKDGTLNLYKKGIRLRIAD----QQLTHFTKNPVRHLSISND-NTLAFTQDGS 291 Query: 230 --TYDDEDILRVYLMDTRIDRAPKRIGNFR--SMILAPRFSSNGKRALISVQKDEAMDIY 285 T + + + +D N I S +GK+ + +++ Sbjct: 292 IYTLKEGGEPKKLTVVIAVDNGNALASNVPLNGQISQFELSPDGKQIAYVSRG----ELF 347 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE----GKEQLYVMQSNGS----- 336 ++ + T+R+TNT +SPD +++ ++R G Q ++ S Sbjct: 348 VTSVEGDFTKRITNTADQERMVKWSPDGKTLIYAAERGRNGWGIYQSSILNQEESYFFNA 407 Query: 337 ----DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 ++ I+ + F P +SP G +A+ + + V + + L+ + Sbjct: 408 TVLKEEPLIT--GKTDNFAPKFSPDGKSVAYIEERN---VLKVYNINTKKTVELLPKGHN 462 Query: 393 QAPT-------WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + WSP + L+ ++ S + I +G E Sbjct: 463 HSYADGDWGFEWSPDSKWLLVDDQRGYFFNSNVALIKADGTAEIR 507 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 91/307 (29%), Gaps = 81/307 (26%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 + VM G LT + + FS + ++V + + R+ Sbjct: 92 NGNFDVYVMPASGGKSTRLTYNSAN-DYPYDFSIDNKEVIFGSARQAPAESTRFPSLRLF 150 Query: 248 RAPKRIGNFRS--------MILAPRFSSNGKRALISVQKDE------------AMDIYSV 287 + R+ I F+ +G + +K DI+ Sbjct: 151 QNLYRVTINGGRPLLVSAAGIENAHFNQDGSLLVFQDRKGYEDPWRKHHTSSVTRDIWLY 210 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS-------------- 333 +L++N E LTN + +S D + + ++++G LY Sbjct: 211 NLRTNTYEALTNEEIEHREPVFSHDGQFVYYLNEKDGTLNLYKKGIRLRIADQQLTHFTK 270 Query: 334 --------------------------NGSDQKRIS--------------QDKEASYFDPV 353 G + K+++ Sbjct: 271 NPVRHLSISNDNTLAFTQDGSIYTLKEGGEPKKLTVVIAVDNGNALASNVPLNGQISQFE 330 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-WSPSGRSLIFSRKKDG 412 SP G IA+ + V +G + + ++ + WSP G++LI++ ++ G Sbjct: 331 LSPDGKQIAYVSRG----ELFVTSVEGDFTKRITNTADQERMVKWSPDGKTLIYAAER-G 385 Query: 413 DTGSKLY 419 G +Y Sbjct: 386 RNGWGIY 392 >gi|282880946|ref|ZP_06289637.1| WD40-like protein [Prevotella timonensis CRIS 5C-B1] gi|281305169|gb|EFA97238.1| WD40-like protein [Prevotella timonensis CRIS 5C-B1] Length = 1068 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 115/303 (37%), Gaps = 42/303 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN V + V K + +RYL+ +++ + +S + Sbjct: 226 FYYLSEEDGTFN-----VYKRGVKSADKTQI--THHTKHPVRYLSVAQNGRIC---YSYD 275 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + V + R D KR N S NGK + D Sbjct: 276 GEIYTQMGSAAPQKVNVSITADRNDIDLKRQINSWGATEI-ALSPNGKEIGFVLHGD--- 331 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y +++ T+++T+T S +SPD IV+ S+REG Q+Y +K+ + Sbjct: 332 -VYVTNIEYKTTKQITDTPEQERSIEFSPDGLAIVYASEREGLWQIYQTTMKNKAEKQFA 390 Query: 343 QDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + F P +SP G IAF + G + V+ + R +++ + Sbjct: 391 YATDLQEERLIHSAYTSFQPQYSPDGKSIAFFENRGT---LKVLDVKSKKVRTVMDGKYV 447 Query: 393 QAPT-------WSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNET--LINTPAYASDP 440 + + WSP + LI G G + ID G+ L + A + Sbjct: 448 YSYSDGDIWFEWSPDSKWLI--SNYIGTGGWNNQDIALIDAEGKKPIYNLTQSGYNAGNG 505 Query: 441 QWV 443 +WV Sbjct: 506 KWV 508 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 28/201 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ S + D +++V +LT+ + +SPD +I F S RE Sbjct: 29 SISPDGQTIAFSYKGD----VFTVPASGGQARQLTSNAAYDSYPIWSPDGKKIAFASSRE 84 Query: 324 GKEQLYVMQSNGSDQKRIS-----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +YVM G + KR++ +D E F P I F + Sbjct: 85 GSLDIYVMDKFGGEPKRLTTRSTNETPIAWRDNEHILFSAAIMPTAKSIFFASSQFPQ-- 142 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDL 423 + + G + + L N++ + + G L F + ++ ++ Sbjct: 143 VYEVNLKGDRPK-LFSVVNMEDLSINQKGEILYHDKKGYEDPFRKHHRSPITRDIW-LNQ 200 Query: 424 NGRNETLINTPAYASDPQWVG 444 NG L P+W Sbjct: 201 NGNFSKLTTFNGEDRTPRWAP 221 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 37/248 (14%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S + SP+ Q +A++ D+ V +++ + + P +S Sbjct: 19 QSNPLWMRHTSISPDGQTIAFSY--KGDVFTV----PASGGQARQLTSNAAYDSYPIWSP 72 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI------------SASYSPDSSQ 315 +GK+ + ++ ++DIY +D +RLT SA+ P + Sbjct: 73 DGKKIAFASSREGSLDIYVMDKFGGEPKRLTTRSTNETPIAWRDNEHILFSAAIMPTAKS 132 Query: 316 IVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----------T 364 I F S + Q+Y + G K S + D + +G+++ Sbjct: 133 IFFASSQ--FPQVYEVNLKGDRPKLFSVV---NMEDLSINQKGEILYHDKKGYEDPFRKH 187 Query: 365 KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 S I + ++G+ +L + + P W+P G S + ++DG +Y + Sbjct: 188 HRSPITRDIWL-NQNGNFSKLTTFNGEDRTPRWAPDGTSFYYLSEEDGTF--NVYKRGVK 244 Query: 425 GRNETLIN 432 ++T I Sbjct: 245 SADKTQIT 252 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 48/384 (12%), Positives = 108/384 (28%), Gaps = 136/384 (35%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K + + G R LT S P +SP+ +K+A+A+ + L +Y+MD + Sbjct: 40 SYKGDVFTVPASGGQARQLT-SNAAYDSYPIWSPDGKKIAFASSREGS-LDIYVMD-KFG 96 Query: 248 RAPKRIGNFRSMI------------LAPRFSSNGKRALISVQKDEAMDIYSVDLQS---- 291 PKR+ + + K + + +Y V+L+ Sbjct: 97 GEPKRLTTRSTNETPIAWRDNEHILFSAAIMPTAKSIFFASSQ--FPQVYEVNLKGDRPK 154 Query: 292 -----------------------------------------------NATERLTNTLFIN 304 +LT + Sbjct: 155 LFSVVNMEDLSINQKGEILYHDKKGYEDPFRKHHRSPITRDIWLNQNGNFSKLTTFNGED 214 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK------------------- 345 + ++PD + + S+ +G +Y +D+ +I+ Sbjct: 215 RTPRWAPDGTSFYYLSEEDGTFNVYKRGVKSADKTQITHHTKHPVRYLSVAQNGRICYSY 274 Query: 346 ----------------------------------EASYFDPVWSPQGDLIAFTKFSGEKF 371 + SP G I F Sbjct: 275 DGEIYTQMGSAAPQKVNVSITADRNDIDLKRQINSWGATEIALSPNGKEIGFVLHGD--- 331 Query: 372 AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG----------DTGSKLYS 420 + V + + + + + + +SP G +++++ +++G + K ++ Sbjct: 332 -VYVTNIEYKTTKQITDTPEQERSIEFSPDGLAIVYASEREGLWQIYQTTMKNKAEKQFA 390 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 + + E LI++ + PQ+ Sbjct: 391 YATDLQEERLIHSAYTSFQPQYSP 414 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 209 SRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 F+P++SP+ + +A+ +L V R K + ++ + +S Sbjct: 402 HSAYTSFQPQYSPDGKSIAFFENRGTLKVLDVKSKKVRTVMDGKYVYSYSDGDIWFEWSP 461 Query: 268 NGKRALISVQKDE---AMDIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDRE 323 + K + + DI +D + LT + + + + I+F+SDR Sbjct: 462 DSKWLISNYIGTGGWNNQDIALIDAEGKKPIYNLTQSGYNAGNGKWVLGGKAIIFQSDRA 521 Query: 324 G 324 G Sbjct: 522 G 522 >gi|198276608|ref|ZP_03209139.1| hypothetical protein BACPLE_02804 [Bacteroides plebeius DSM 17135] gi|198270133|gb|EDY94403.1| hypothetical protein BACPLE_02804 [Bacteroides plebeius DSM 17135] Length = 1083 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 40/242 (16%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V +++ + P +S +G++ + Sbjct: 29 SISPDGSTIAFCY--KGDIYTV----PSTGGNARQLTTNPAYDTHPIWSPDGQQIAFASA 82 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYS------------PDSSQIVFESDREGK 325 + +MDIY V +RLT ++S PD++ + F S + Sbjct: 83 RQGSMDIYIVSKDGGVPKRLTTHSGNETPVTFSDATHILFKANLMPDATDLSFPSAQ--F 140 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------------FAI 373 Q+Y + + G K S D + G + + G + I Sbjct: 141 PQIYEVSTQGGRPKLYSSLP---MEDISVAQDGTTLLYHDQKGYEDPWRKHHTSSITRDI 197 Query: 374 GVMKKDGSQE---RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + KK+ ++ ++ + + P WS +S + +K+G ++ +LNG NET Sbjct: 198 WISKKENNERTYQKITSFNGEDRNPIWSNDNQSFYYLSEKNGSF--NIFKCNLNGSNETQ 255 Query: 431 IN 432 + Sbjct: 256 LT 257 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 31/204 (15%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + D IY+V +LT + +SPD QI F S R+ Sbjct: 29 SISPDGSTIAFCYKGD----IYTVPSTGGNARQLTTNPAYDTHPIWSPDGQQIAFASARQ 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------TKFSGEKF-A 372 G +Y++ +G KR++ + +S I F F +F Sbjct: 85 GSMDIYIVSKDGGVPKRLTT-HSGNETPVTFS-DATHILFKANLMPDATDLSFPSAQFPQ 142 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF----------SRKKDGDTGSKLYSI- 421 I + G + + L ++ + + G +L++ + ++ Sbjct: 143 IYEVSTQGGRPK-LYSSLPMEDISVAQDGTTLLYHDQKGYEDPWRKHHTSSITRDIWISK 201 Query: 422 --DLNGRNETLINTPAYASDPQWV 443 + + + + +P W Sbjct: 202 KENNERTYQKITSFNGEDRNPIWS 225 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 105/312 (33%), Gaps = 38/312 (12%) Query: 163 YQSITGEKGDFNSRILF----VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR 218 YQ IT G+ + I + ++ + +G+N LT + Sbjct: 209 YQKITSFNGEDRNPIWSNDNQSFYYLSEKNGSFNIFKCNLNGSNETQLTHHTQHPVRFLS 268 Query: 219 FSPNQ------QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKR 271 S N + Y + + +V + + +S S NGK Sbjct: 269 SSKNGLLCYGYEGEIYTVKEGQQPQKVAISIVTDQTETELAHQIKSSGATEIAVSPNGKE 328 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + D ++ + T+++T+T S ++PD IV+ S+R G Q+Y Sbjct: 329 VAFILHGD----VFVTSTEYKTTKQITDTPEQERSIDFAPDGRSIVYASERNGLWQIYQS 384 Query: 332 QSNGSDQKRISQDKE----------ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 ++K + + + F P +SP G IAF + + V+ Sbjct: 385 TLTKEEEKLFTYATDIKEEQLTHSQVTSFQPQYSPDGKQIAFLENRTT---LRVLDLKDK 441 Query: 382 QERLLVEDSNLQAPT-------WSPSGRSLIFSRKKDGDTGSK---LYSIDLNGRNETLI 431 R ++ + + WSP + L+ G + L S NG L Sbjct: 442 SVRTAMDGKYEYSYSDGDQWFQWSPDSKWLLCGYIGTGGWNNNDVALVSASGNGEIHNLT 501 Query: 432 NTPAYASDPQWV 443 + S+ +WV Sbjct: 502 ESGYTDSNAKWV 513 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 48/395 (12%), Positives = 113/395 (28%), Gaps = 143/395 (36%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G N R LT P +SP+ Q++A+A+ + +Y++ ++ Sbjct: 41 YKGDIYTVPSTGGNARQLTT-NPAYDTHPIWSPDGQQIAFASARQGS-MDIYIV-SKDGG 97 Query: 249 APKRIGNFRSMILAPRFS------------SNGKRALI----------SVQKDEAMDIYS 286 PKR+ FS + + +YS Sbjct: 98 VPKRLTTHSGNETPVTFSDATHILFKANLMPDATDLSFPSAQFPQIYEVSTQGGRPKLYS 157 Query: 287 --------VDLQSNAT------------------------------------ERLTNTLF 302 V +++T+ Sbjct: 158 SLPMEDISVAQDGTTLLYHDQKGYEDPWRKHHTSSITRDIWISKKENNERTYQKITSFNG 217 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS------- 355 + + +S D+ + S++ G ++ NGS++ +++ + S Sbjct: 218 EDRNPIWSNDNQSFYYLSEKNGSFNIFKCNLNGSNETQLTHHTQHPVRFLSSSKNGLLCY 277 Query: 356 ----------------------------------------------PQGDLIAFTKFSGE 369 P G +AF Sbjct: 278 GYEGEIYTVKEGQQPQKVAISIVTDQTETELAHQIKSSGATEIAVSPNGKEVAFILHGD- 336 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDG----------DTGSKL 418 + V + + + + + + ++P GRS++++ +++G KL Sbjct: 337 ---VFVTSTEYKTTKQITDTPEQERSIDFAPDGRSIVYASERNGLWQIYQSTLTKEEEKL 393 Query: 419 YSIDLNGRNETLINT------PAYASDPQWVGFMD 447 ++ + + E L ++ P Y+ D + + F++ Sbjct: 394 FTYATDIKEEQLTHSQVTSFQPQYSPDGKQIAFLE 428 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 352 PVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKK 410 SP G IAF I + G R L + P WSP G+ + F+ + Sbjct: 28 CSISPDGSTIAFCYKGD----IYTVPSTGGNARQLTTNPAYDTHPIWSPDGQQIAFASAR 83 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYASDP 440 G +Y + +G + T + P Sbjct: 84 QGSM--DIYIVSKDGGVPKRLTTHSGNETP 111 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 63/373 (16%), Positives = 112/373 (30%), Gaps = 50/373 (13%) Query: 83 SQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLW-DVK--DRKQI 139 Q +T+ S GA + V GK V F L DV + Sbjct: 292 PQKVAISIVTDQTETELAHQIKSSGATEIA---VSPNGK---EVAFILHGDVFVTSTEYK 345 Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRD 199 K+ +P R I + G + + L D Sbjct: 346 TTKQITDTPEQERSIDFAPDGRSIVYASERNGLWQ------IYQSTLTKEEEKLFTYATD 399 Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRS 258 + F+P++SP+ +++A+ +L + R K ++ Sbjct: 400 IKEEQ--LTHSQVTSFQPQYSPDGKQIAFLENRTTLRVLDLKDKSVRTAMDGKYEYSYSD 457 Query: 259 MILAPRFSSNGKRALISVQKDEAM---DIYSVDLQS-NATERLTNTLFINISASYSPDSS 314 ++S + K L D+ V LT + + + +A + D Sbjct: 458 GDQWFQWSPDSKWLLCGYIGTGGWNNNDVALVSASGNGEIHNLTESGYTDSNAKWVLDGK 517 Query: 315 QIVFESDREGK---------EQLYVMQSNGSDQKRISQDKE---------------ASYF 350 +++ESDR G +Y+M + +R +KE Sbjct: 518 AMIWESDRAGYRSHGSWGAESDVYIMFFDLEAYERFRLNKEELALVKEKEDKEKEKDKQD 577 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 D + K + F + + RL V S+L SP G L + + Sbjct: 578 DKKKEKKEKSEKEKKVTPLTFDLENCRD--RIIRLTVNSSHLGDAVLSPDGDKLYY--QA 633 Query: 411 DGDTGSKLYSIDL 423 + G+ L+ DL Sbjct: 634 SFEDGADLWVHDL 646 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 + SP G ++ F K +Y++ G N + T PAY + P W Sbjct: 29 SISPDGSTIAFCYK------GDIYTVPSTGGNARQLTTNPAYDTHPIWSP 72 >gi|94968180|ref|YP_590228.1| peptidase S9, prolyl oligopeptidase active site region [Candidatus Koribacter versatilis Ellin345] gi|94550230|gb|ABF40154.1| peptidase S9, prolyl oligopeptidase active site region [Candidatus Koribacter versatilis Ellin345] Length = 750 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 111/343 (32%), Gaps = 45/343 (13%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDD----IYQSITGEKGDFNSRILFVSESVVSGII 189 +Q+ + A TIS+D +Y T G +S + ++ Sbjct: 122 FKARQL---THYHGDDGQPIAALTISNDGKTILYARGTEVNGGGSS----ANPQSLTAGA 174 Query: 190 KNSLCVMDRDGANIRYLTPSR--DQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K + +D R L ++ + + SP+ + A+A + + L Sbjct: 175 KQQVFAIDVAKGEPRTLGDMGCGEEGCEDIQISPDGKWAAWA-----NKTGILLAPIDGK 229 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA 307 + K++ R + PR+S +GKR V + + I ++ L + + Sbjct: 230 QQAKKLNELRGELSEPRWSPDGKRLAFVVNRTDHSFIGLQEIGGTEVRYLAPSTNRDDLP 289 Query: 308 SYSPDSSQIVFESD------------REGKEQLYVMQSNGSDQKRISQDKEAS------Y 349 +S D QI F R ++V ++ + K + + + Sbjct: 290 RWSADGKQIAFVRQPGVQAKLPLIPVRPHPWSIWVADASTAQGKEVWHSGDQPRDSFPMF 349 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 + GD I F + + + G + L + ++ T S + + +S Sbjct: 350 IGTSFYFAGDRIVFVSTRDNRNHLYSVPAAGGEATQLTQGNFEVEDVTLSKDQKWITYSS 409 Query: 409 KK-----DGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + + L+ + G +++ +W + Sbjct: 410 NEYTSDSKDEDRRHLWRVPATGGQRQQLSSGETI---EWSPTL 449 >gi|333030832|ref|ZP_08458893.1| peptidase S41 [Bacteroides coprosuis DSM 18011] gi|332741429|gb|EGJ71911.1| peptidase S41 [Bacteroides coprosuis DSM 18011] Length = 1079 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 28/202 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D IY V +LT + +SPD ++I F S+RE Sbjct: 30 AISPDGSEIAFTYKGD----IYKVPSSGGKAIQLTTHPAHDTQPVWSPDGNKIAFASNRE 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKF----AIG 374 G +++M S G R++ Y P+ + + +T F + Sbjct: 86 GGFDIHLMSSRGGAPTRLTTHSANEY--PIVFRDNEHVLYTANIMADVKDGHFPSFSQVY 143 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIF----------SRKKDGDTGSKLYSIDLN 424 + +G + L L+ ++ P+ +++ + ++ DLN Sbjct: 144 EVDTEGKRP-ALFSSMPLEDISFHPTENKILYHDKKGYEDPWRKHHQSSIARDIWLCDLN 202 Query: 425 GRN--ETLINTPAYASDPQWVG 444 G L N +P W Sbjct: 203 GERTYTKLTNFRGEDRNPTWTA 224 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 39/263 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 LC+ GA+ + + SP+ ++A+ DI +V + Sbjct: 9 LCLSFAVGASAQ----DTPLWMRYAAISPDGSEIAFTY--KGDIYKV----PSSGGKAIQ 58 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + + P +S +G + + ++ DI+ + + A RLT D Sbjct: 59 LTTHPAHDTQPVWSPDGNKIAFASNREGGFDIHLMSSRGGAPTRLTTHSANEY-PIVFRD 117 Query: 313 SSQIVFESD-----REGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + +++ ++ ++G Q+Y + + G KR + D + P + I + Sbjct: 118 NEHVLYTANIMADVKDGHFPSFSQVYEVDTEG---KRPALFSSMPLEDISFHPTENKILY 174 Query: 364 ------------TKFSGEKFAIGVMKKDG--SQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 S I + +G + +L + PTW+ G S + + Sbjct: 175 HDKKGYEDPWRKHHQSSIARDIWLCDLNGERTYTKLTNFRGEDRNPTWTADGNSFFYLNE 234 Query: 410 KDGDTGSKLYSIDLNGRNETLIN 432 +DG +Y +L+G ++ + Sbjct: 235 EDGSF--NVYKRNLDGSDKKQLT 255 Score = 97.8 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SPN +++A+ D +++ ++I N FS +G+ L + + Sbjct: 319 SVSPNGKEIAFIIRGD-----IFVTSIEYGT-TRQITNTPEQERDVSFSPDGRSLLYAAE 372 Query: 278 KDEAMDIYSVDLQ-----------SNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 ++ A +IY L S E+LT++ + YSPD + F DR Sbjct: 373 RNGAWNIYQTTLDIKDEKEFIYAQSFTEEQLTDSDKASFQPLYSPDGKSVAFLEDRT--- 429 Query: 327 QLYVMQSNGSDQKRISQDKEASYF-----DPVWSPQGDLIA--FTKFSG-EKFAIGVMKK 378 L V+ + K + K + W+P + + G ++K Sbjct: 430 TLKVLNLSNKKSKTVLDGKFNYSYSDGDQWFQWAPDSKWLLTQYIGIGGWNNVDAALVKA 489 Query: 379 DGSQE-RLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 DGS E L E P + G+++++ + G Sbjct: 490 DGSGELTNLTESGYTDGNPRFVQDGKAMLWFSDRAG 525 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 121/302 (40%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + + E G FN V + + G K L + + +R+LT S+ +L F + Sbjct: 229 FFYLNEEDGSFN-----VYKRNLDGSDKKQLTHLKK--HPVRFLTQSKAGVLC---FVYD 278 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + +R+ ++ + + A K NFR+ S NGK ++ D Sbjct: 279 GEIYTLREGAEPQKVRIEIITDQQESAVKHF-NFRTGAKEMSVSPNGKEIAFIIRGD--- 334 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK--- 339 I+ ++ T ++TNT S+SPD +++ ++R G +Y + D+K Sbjct: 335 -IFVTSIEYGTTRQITNTPEQERDVSFSPDGRSLLYAAERNGAWNIYQTTLDIKDEKEFI 393 Query: 340 --------RISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 +++ +AS F P++SP G +AF + + V+ + + +++ Sbjct: 394 YAQSFTEEQLTDSDKAS-FQPLYSPDGKSVAFLEDRTT---LKVLNLSNKKSKTVLDGKF 449 Query: 392 LQAPT-------WSPSGRSLIFSRKKDGDTG---SKLYSIDLNGRNETLINTPAYASDPQ 441 + + W+P + L+ G + L D +G L + +P+ Sbjct: 450 NYSYSDGDQWFQWAPDSKWLLTQYIGIGGWNNVDAALVKADGSGELTNLTESGYTDGNPR 509 Query: 442 WV 443 +V Sbjct: 510 FV 511 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 118/355 (33%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K + + G LT +P +SP+ K+A+A+ + ++LM +R Sbjct: 41 TYKGDIYKVPSSGGKAIQLTTHPAH-DTQPVWSPDGNKIAFASNREGG-FDIHLMSSR-G 97 Query: 248 RAPKRIGNFRSMIL------------------------APRFS------SNGKR-ALISV 276 AP R+ + P FS + GKR AL S Sbjct: 98 GAPTRLTTHSANEYPIVFRDNEHVLYTANIMADVKDGHFPSFSQVYEVDTEGKRPALFSS 157 Query: 277 -------------------------------QKDEAMDIYSVDLQS-NATERLTNTLFIN 304 Q A DI+ DL +LTN + Sbjct: 158 MPLEDISFHPTENKILYHDKKGYEDPWRKHHQSSIARDIWLCDLNGERTYTKLTNFRGED 217 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS--------- 355 + +++ D + + ++ +G +Y +GSD+K+++ K+ S Sbjct: 218 RNPTWTADGNSFFYLNEEDGSFNVYKRNLDGSDKKQLTHLKKHPVRFLTQSKAGVLCFVY 277 Query: 356 ------------PQGDLI----------------------AFTKFSGEKF------AIGV 375 PQ I +G++ I V Sbjct: 278 DGEIYTLREGAEPQKVRIEIITDQQESAVKHFNFRTGAKEMSVSPNGKEIAFIIRGDIFV 337 Query: 376 MKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET 429 + R + + ++SP GRSL+++ +++G +Y L+ ++E Sbjct: 338 TSIEYGTTRQITNTPEQERDVSFSPDGRSLLYAAERNGAW--NIYQTTLDIKDEK 390 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 D+ F+P +SP+ + VA+ +L + ++ K ++ ++ Sbjct: 403 LTDSDKASFQPLYSPDGKSVAFLEDRTTLKVLNLSNKKSKTVLDGKFNYSYSDGDQWFQW 462 Query: 266 SSNGKRALISVQKDE---AMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 + + K L +D V LT + + + + + D +++ SD Sbjct: 463 APDSKWLLTQYIGIGGWNNVDAALVKADGSGELTNLTESGYTDGNPRFVQDGKAMLWFSD 522 Query: 322 REG 324 R G Sbjct: 523 RAG 525 >gi|163846645|ref|YP_001634689.1| peptidase S9 prolyl oligopeptidase [Chloroflexus aurantiacus J-10-fl] gi|222524445|ref|YP_002568916.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667934|gb|ABY34300.1| peptidase S9 prolyl oligopeptidase active site domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448324|gb|ACM52590.1| peptidase S9 prolyl oligopeptidase active site domain protein [Chloroflexus sp. Y-400-fl] Length = 678 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 118/342 (34%), Gaps = 85/342 (24%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 +++V+ V + + ++ DG IR T + +PR+SP+ + +A+ + D++ Sbjct: 34 VVWVTVDRVGNGYRRHIVLVATDGGQIRRFTRGKQ--DRQPRWSPDGRWIAFVSNRDDER 91 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI---------------------- 274 ++Y++ ++I + + P +S +G+ Sbjct: 92 GQIYIIPVD-GGEARQITSHPNGASDPAWSPDGRYIAFLAPVNAEEQAREDAGETPPPPA 150 Query: 275 -----SVQKDEAMDIYSVDLQSNATERL-------------------------------- 297 +++ + + +L Sbjct: 151 DAWEARRSREQRQHEEEMRVDPRVITKLPYRSGTSYFDDRRRHIYLVEVTDDDQPSTPRR 210 Query: 298 -TNTLFINISASYSPDSSQIVFESDRE-------GKEQLYVMQSNGSDQKRISQDKEASY 349 T+ + + P ++ + R+ + + +GS ++ SY Sbjct: 211 LTSGDIHYSAPVWMPAGDALLSTATRDPEADSLFAYYDVMCVPLDGSSPHPLTSSGF-SY 269 Query: 350 FDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGR 402 FDP SP G IAF + + GE + ++ G + L D N++ W P G+ Sbjct: 270 FDPRPSPDGTQIAFLRLNESRLLGEGKRVAIIPATGGEPHDLTAHTDLNVEQFHWQPDGQ 329 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRN-----ETLINTPAYASD 439 ++FS GD + +Y I L G TL+ P S+ Sbjct: 330 GVLFSAGWRGD--AHVYQIGLPGTPTYRNGATLVGGPRIVSE 369 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 95/267 (35%), Gaps = 32/267 (11%) Query: 212 QILFEPRFSPNQQKVAYATY---DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 L +PR SP+ + VA + R +++ D R PR+S + Sbjct: 18 GWLEDPRLSPDGRYVAVVWVTVDRVGNGYRRHIVLVATDGGQIRRFTRGKQDRQPRWSPD 77 Query: 269 GKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF----ESDRE 323 G+ +D+ IY + + ++T+ ++SPD I F ++ + Sbjct: 78 GRWIAFVSNRDDERGQIYIIPVDGGEARQITSHPNGASDPAWSPDGRYIAFLAPVNAEEQ 137 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA-------FTKFSGEKFAIGVM 376 +E +D + +E + +I + F + I ++ Sbjct: 138 AREDAGETPPPPADAWEARRSREQRQHEEEMRVDPRVITKLPYRSGTSYFDDRRRHIYLV 197 Query: 377 -----KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS-----KLYSIDLNGR 426 + + RL D + AP W P+G +L+ + +D + S + + L+G Sbjct: 198 EVTDDDQPSTPRRLTSGDIHYSAPVWMPAGDALLSTATRDPEADSLFAYYDVMCVPLDGS 257 Query: 427 NETLINTPAY-------ASDPQWVGFM 446 + + + + + D + F+ Sbjct: 258 SPHPLTSSGFSYFDPRPSPDGTQIAFL 284 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 74/224 (33%), Gaps = 19/224 (8%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA------ 281 Y I V + D P+R+ + AP + G L + +D Sbjct: 186 YFDDRRRHIYLVEVTDDDQPSTPRRLTSGDIHYSAPVWMPAGDALLSTATRDPEADSLFA 245 Query: 282 -MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF----ESDREG-KEQLYVMQSNG 335 D+ V L ++ LT++ F SPD +QI F ES G +++ ++ + G Sbjct: 246 YYDVMCVPLDGSSPHPLTSSGFSYFDPRPSPDGTQIAFLRLNESRLLGEGKRVAIIPATG 305 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS-----QERLLVEDS 390 + ++ + + W P G + F+ + + G+ L+ Sbjct: 306 GEPHDLTAHTDLNVEQFHWQPDGQGVLFSAGWRGDAHVYQIGLPGTPTYRNGATLVGGPR 365 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + G + F D L+ +G+ L Sbjct: 366 IVSEFDVGRDGT-IAFVAG-SADNPCDLFVRGADGQERRLTAIN 407 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 19/230 (8%) Query: 175 SRILFVSESVVSGIIKNSLC---VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +++ + S + + + V D D + S D P + P + Sbjct: 176 TKLPYRSGTSYFDDRRRHIYLVEVTDDDQPSTPRRLTSGDIHYSAPVWMPAGDALLSTAT 235 Query: 232 DDEDILRVYLMD-----TRIDRAPKRIGNFRSMILAPRFSSNGKRALI-----SVQKDEA 281 D + ++ +P + + PR S +G + S E Sbjct: 236 RDPEADSLFAYYDVMCVPLDGSSPHPLTSSGFSYFDPRPSPDGTQIAFLRLNESRLLGEG 295 Query: 282 MDIYSVDLQSNATERLTNTLFINIS-ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + + LT +N+ + PD ++F + G +Y + G+ R Sbjct: 296 KRVAIIPATGGEPHDLTAHTDLNVEQFHWQPDGQGVLFSAGWRGDAHVYQIGLPGTPTYR 355 Query: 341 ---ISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQERLL 386 + G IAF S + + V DG + RL Sbjct: 356 NGATLVGGPRIVSEFDVGRDGT-IAFVAGSADNPCDLFVRGADGQERRLT 404 Score = 44.2 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 4/147 (2%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIK-NSLCVMDRDGANIRYLTPSRDQI 213 H ++ + ++I F+ + + + + ++ G LT D Sbjct: 259 PHPLTSSGFSYFDPRPSPDGTQIAFLRLNESRLLGEGKRVAIIPATGGEPHDLTAHTDLN 318 Query: 214 LFEPRFSPNQQKVAYATYDDED--ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 + + + P+ Q V ++ D + ++ L T R + ++ +G Sbjct: 319 VEQFHWQPDGQGVLFSAGWRGDAHVYQIGLPGTPTYRNGATLVGGPRIVSEFDVGRDGTI 378 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLT 298 A ++ D D++ RLT Sbjct: 379 AFVAGSADNPCDLFVRGAD-GQERRLT 404 Score = 40.4 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 10/71 (14%) Query: 386 LVEDSNLQAPTWSPSGRSLIF----SRKKDGDTGSKLYSIDLNGRNETLIN------TPA 435 L E L+ P SP GR + + + + +G P Sbjct: 14 LYELGWLEDPRLSPDGRYVAVVWVTVDRVGNGYRRHIVLVATDGGQIRRFTRGKQDRQPR 73 Query: 436 YASDPQWVGFM 446 ++ D +W+ F+ Sbjct: 74 WSPDGRWIAFV 84 >gi|159897952|ref|YP_001544199.1| peptidase S9 prolyl oligopeptidase [Herpetosiphon aurantiacus ATCC 23779] gi|159890991|gb|ABX04071.1| peptidase S9 prolyl oligopeptidase active site domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 682 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 104/287 (36%), Gaps = 58/287 (20%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATY-----------DDEDILRVYLMDTRIDRAP 250 N + + + + + + SPN +++A+ D ++ P Sbjct: 6 NWQATSLLELRFISDAQISPNGEQIAFVETWIEETTNKSGTRKPDYRSAIMLIQADGGIP 65 Query: 251 KRIG-NFRSMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQ-SNATERLTNTLFINISA 307 +R+ + +PR+S +G + +D ++ +DL ++LT+ + Sbjct: 66 QRMTFSVSGRDSSPRWSPDGSKLAFISTRDAGVAQLFVLDLARGGEAQQLTSLGYGVAEI 125 Query: 308 SYSPDSSQIVFESD-------------REGK-------------------EQLYVMQSNG 335 ++ PDS + F S R+ K Q+++++ G Sbjct: 126 NWRPDSQALAFISRGAKAKAQTHVESLRDEKIIERLPFKFDGVGYLQPEYAQIWLVEL-G 184 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVED 389 + +I+ D+ + DP WSP G +AF S + + ++ R L Sbjct: 185 QEPNQIT-DQAFDHADPAWSPDGSELAFITVSRAELEHTRQADMYLLNVAAGTSRCLTNA 243 Query: 390 -SNLQAPTWSPSGRSLIFS---RKKDGDTGSKLYSIDLNGRNETLIN 432 + PTWSP G + + + + L+ + G + L++ Sbjct: 244 LGPVYHPTWSPDGSQIAYIGHDQHTGNASNEALWCVSRAGGDARLLS 290 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 104/308 (33%), Gaps = 66/308 (21%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 ++++ ++ DG + +T S PR+SP+ K+A+ + D + +++++D Sbjct: 46 TRKPDYRSAIMLIQADGGIPQRMTFSVSGRDSSPRWSPDGSKLAFISTRDAGVAQLFVLD 105 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------------------- 277 +++ + + + + + + Sbjct: 106 LARGGEAQQLTSLGYGVAEINWRPDSQALAFISRGAKAKAQTHVESLRDEKIIERLPFKF 165 Query: 278 ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES------DREGK 325 + E I+ V+L ++T+ F + ++SPD S++ F + + + Sbjct: 166 DGVGYLQPEYAQIWLVEL-GQEPNQITDQAFDHADPAWSPDGSELAFITVSRAELEHTRQ 224 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----SGEKFAIGVMKKDG 380 +Y++ + ++ + + P WSP G IA+ + A+ + + G Sbjct: 225 ADMYLLNVAAGTSRCLT-NALGPVYHPTWSPDGSQIAYIGHDQHTGNASNEALWCVSRAG 283 Query: 381 SQERLLVEDSNL----------------QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 RLL P W +G + + T + YS + Sbjct: 284 GDARLLSVGFEYGLENSVISDARIGRFPYRPYWRDNG--IYCLATRAARTRAYRYS---D 338 Query: 425 GRNETLIN 432 G L Sbjct: 339 GAMHELTP 346 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 97/320 (30%), Gaps = 71/320 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S++ F+S L V+D S + E + P+ Q +A+ + + Sbjct: 86 SKLAFISTR---DAGVAQLFVLDLARGGEAQQLTSLGYGVAEINWRPDSQALAFISRGAK 142 Query: 235 -----------------------------DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + + + P +I + P + Sbjct: 143 AKAQTHVESLRDEKIIERLPFKFDGVGYLQPEYAQIWLVELGQEPNQITDQAFDHADPAW 202 Query: 266 SSNGKRALIS------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 S +G ++ D+Y +++ + + LTN L ++SPD SQI + Sbjct: 203 SPDGSELAFITVSRAELEHTRQADMYLLNVAAGTSRCLTNALGPVYHPTWSPDGSQIAYI 262 Query: 320 SD-----REGKEQLYVMQSNGSDQKRISQDKEASY--------------FDPVWSPQGDL 360 E L+ + G D + +S E + P W G Sbjct: 263 GHDQHTGNASNEALWCVSRAGGDARLLSVGFEYGLENSVISDARIGRFPYRPYWRDNGIY 322 Query: 361 -IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL----IFSRKKDGDTG 415 +A + DG+ L ED P+ S +SL F+ Sbjct: 323 CLATRAARTRAYRY----SDGAMHELTPED----NPSISGYSQSLNKRTAFTAGTATQLE 374 Query: 416 SKLYSIDLNGRNETLINTPA 435 + LY D +G L + A Sbjct: 375 A-LYMGDADGSIHLLYDPNA 393 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 86/296 (29%), Gaps = 48/296 (16%) Query: 125 RVEFRLWDVKDR---KQIIGKKFFSSPASWR----------KIAHTISDDIYQSITGEKG 171 + + D+ +Q+ + + +WR + A + +S+ EK Sbjct: 98 VAQLFVLDLARGGEAQQLTSLGYGVAEINWRPDSQALAFISRGAKAKAQTHVESLRDEKI 157 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 F + +++ G +T + +P +SP+ ++A+ T Sbjct: 158 IERLPFKF-DGVGYLQPEYAQIWLVEL-GQEPNQITD-QAFDHADPAWSPDGSELAFITV 214 Query: 232 -----DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV--QKDEAMD- 283 + +YL++ + + N + P +S +G + Q Sbjct: 215 SRAELEHTRQADMYLLNVAAG-TSRCLTNALGPVYHPTWSPDGSQIAYIGHDQHTGNASN 273 Query: 284 --IYSVDLQSNATERLTNTLFINIS---------------ASYSPDSSQIVFESDREGKE 326 ++ V L+ + + + I + R + Sbjct: 274 EALWCVSRAGGDARLLSVGFEYGLENSVISDARIGRFPYRPYWRDNG--IYCLATRAART 331 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA-IGVMKKDGS 381 + Y ++ + S S AFT + + + + DGS Sbjct: 332 RAYRYS--DGAMHELTPEDNPSISGYSQSLN-KRTAFTAGTATQLEALYMGDADGS 384 >gi|325919579|ref|ZP_08181591.1| amidohydrolase, imidazolonepropionase [Xanthomonas gardneri ATCC 19865] gi|325549915|gb|EGD20757.1| amidohydrolase, imidazolonepropionase [Xanthomonas gardneri ATCC 19865] Length = 1110 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 30/214 (14%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 L TR G + + ++PR +G+ D D+Y++D + ++ Sbjct: 64 LQATRRIAFETDEGTWMGLDVSPR---DGRLVF-----DLLGDLYTLDADGGRAKAISRG 115 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS-YFDPVWSPQGD 359 L + ++SPD I F SDR G E L+ M+ +G D ++++ + + P W+P G Sbjct: 116 LGFDSQPTFSPDGRWIAFVSDRSGAENLWRMRPDGRDAQQLTFGDDDTVLVSPAWAPDGS 175 Query: 360 LIAFTKF--SGEKFAIGVMKKDGSQERLLVEDSNLQ---------APTWSPSGRSLIFSR 408 + ++F S + + D S+ LV + SP GR L ++ Sbjct: 176 ALYASRFRWSVNDYELWRYGLDCSE--RLVAPVRAEGAGSEQSTLGAVVSPDGRQL-YAA 232 Query: 409 KKDGDTGS---KLYSI---DL-NGRNETLINTPA 435 ++ GD S +L+SI DL G+ ET++ P Sbjct: 233 RRSGDKDSAELELWSIVRRDLATGKEETILPVPG 266 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 103/331 (31%), Gaps = 58/331 (17%) Query: 166 ITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDG-----ANIRYLTPSRDQILFEPRFS 220 + + L+ S S + L D A +R +Q S Sbjct: 165 LVSPAWAPDGSALYASRFRWS-VNDYELWRYGLDCSERLVAPVRAEGAGSEQSTLGAVVS 223 Query: 221 PNQQKVAYATYDDED-------ILRVYLMDTRIDRAPKRIG--------NFRSMILAPRF 265 P+ +++ YA D + + D + + F +PR Sbjct: 224 PDGRQL-YAARRSGDKDSAELELWSIVRRDLATGKEETILPVPGVPGRRPFPGTYFSPRL 282 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA--SYSPDSSQIVFESD-- 321 S +GK+ + ++ + L + + + + S S+ + F D Sbjct: 283 SPDGKQLAYATRQQGQTGLRLRTLATGEDRWIAFPIAHDQSQAQSWQDLVPRYAFSRDGR 342 Query: 322 -----REGKEQLYVMQ-------------------SNGSDQKRISQDKEASYF-DPVWSP 356 R G+ + + G+D ++ + +A DP SP Sbjct: 343 ALLLSRNGRFERIALDREAPRAIPFIASVDLELGPLTGADIRQDTGPVQARLIQDPAVSP 402 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT 414 G +AF+ A+ +M + RL D P+W+P G++L + + G+ Sbjct: 403 DGTRVAFSALG----ALYLMDMEDGALPKRLPTGDVPAFHPSWAPDGKALTYVTWEGGEG 458 Query: 415 GSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 G L + P Y + P + Sbjct: 459 GQVWALAPGAAAPRQLSHGPGAYYTHPVFTP 489 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 106/328 (32%), Gaps = 56/328 (17%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 ++G + + + + + L +D DG + ++ +P FSP+ + +A Sbjct: 74 TDEGTWMGLDVSPRDGRLVFDLLGDLYTLDADGGRAKAISRGL-GFDSQPTFSPDGRWIA 132 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK----DEAMD 283 + + + D G+ +++++P ++ +G S + D + Sbjct: 133 FVSDRSGAENLWRMRPDGRDAQQLTFGDDDTVLVSPAWAPDGSALYASRFRWSVNDYELW 192 Query: 284 IYSVDLQSNATERLTNTLFIN----ISASYSPDSSQIVFESDREGK--------EQLYVM 331 Y +D + + + A SPD Q+ + + R G + Sbjct: 193 RYGLDCSERLVAPVRAEGAGSEQSTLGAVVSPDGRQL-YAARRSGDKDSAELELWSIVRR 251 Query: 332 QSNGSDQKRI--------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 ++ I + +YF P SP G +A+ + + + ++ Sbjct: 252 DLATGKEETILPVPGVPGRRPFPGTYFSPRLSPDGKQLAYATRQQGQTGLRLRTLATGED 311 Query: 384 RLL----------VEDSNLQAP--TWSPSGRSLIFSRK----------KDGDTGSKLYSI 421 R + + P +S GR+L+ SR + + S+ Sbjct: 312 RWIAFPIAHDQSQAQSWQDLVPRYAFSRDGRALLLSRNGRFERIALDREAPRAIPFIASV 371 Query: 422 D-----LNGRNETLINTPAYAS---DPQ 441 D L G + P A DP Sbjct: 372 DLELGPLTGADIRQDTGPVQARLIQDPA 399 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 96/291 (32%), Gaps = 40/291 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + + V+ +L +MD DGA + L P+ D F P ++P+ + + Y T++ + Sbjct: 400 VSPDGTRVAFSALGALYLMDMEDGALPKRL-PTGDVPAFHPSWAPDGKALTYVTWEGGEG 458 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-------------EAMD 283 +V+ + + + P F+ +G+ L+ + Sbjct: 459 GQVWALAPGAAAPRQLSHGPGAYYTHPVFTPDGRDVLVVASDNVARMQASMVFGSVREAQ 518 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG------KEQLYVMQSNGSD 337 + + Q R+ + + + + D+ + V+ G + L Sbjct: 519 LQRLSAQGGQA-RILHRGTLGGTLHFGADADR-VYAMGSGGLLGIDLRSGLADAPIVVKG 576 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE---------RLLVE 388 QD D SP G + ++ + + K G+ R + + Sbjct: 577 PGWYFQDGSVPVDDLRISPDGQWLL--AQVAQQLHLLPVPKKGTTVDLLAPGMRHRRITD 634 Query: 389 DSNLQAPTWSPSGRSLIF----SRKKDGDTGSKLYSIDLNGRNETLINTPA 435 WS GR++ + S + L+ D G + + TP Sbjct: 635 VGADYF-AWSADGRTMTWSIGSSVYRRARADIALHVADAPG-WDADVPTPG 683 >gi|254294875|ref|YP_003060898.1| amidohydrolase [Hirschia baltica ATCC 49814] gi|254043406|gb|ACT60201.1| amidohydrolase [Hirschia baltica ATCC 49814] Length = 1103 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 13/166 (7%) Query: 257 RSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 ++ S +GK + D IY + + + + + S +S D + Sbjct: 33 EGSWMSLDISPDGKWIAFDLLND----IYIMSAEGGEAKAILSGPATQKSPQFSSDGKTL 88 Query: 317 VFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV- 375 + SD G + ++ G +K+IS ++ P WSP + I E + Sbjct: 89 AYISDASGHDNIWTASVKGKKRKQISFEERDIISSPAWSPSDEAIIAVVREPEASKVYSS 148 Query: 376 ----MKKDGSQERLLVE----DSNLQAPTWSPSGRSLIFSRKKDGD 413 DGS+ + +V+ ++Q P +SP G L ++++ GD Sbjct: 149 TIREYYVDGSEPKHMVDAPGGRRDVQEPRYSPDGEYLYYTQRVGGD 194 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 95/268 (35%), Gaps = 61/268 (22%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SP+ + +A+ +D +Y+M K I + + +P+FSS+GK Sbjct: 41 ISPDGKWIAFDLLND-----IYIMSAE-GGEAKAILSGPATQKSPQFSSDGKTLAYISDA 94 Query: 279 DEAMDIYSVDLQSNATERLTN-TLFINISASYSP-DSSQIVFESDREG----KEQLYVMQ 332 +I++ ++ ++++ I S ++SP D + I + E + Sbjct: 95 SGHDNIWTASVKGKKRKQISFEERDIISSPAWSPSDEAIIAVVREPEASKVYSSTIREYY 154 Query: 333 SNGSDQKRI--SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG---------VMKK--- 378 +GS+ K + + +P +SP G+ + +T+ G + VM+ Sbjct: 155 VDGSEPKHMVDAPGGRRDVQEPRYSPDGEYLYYTQRVGGDHYVYVNTGLKNFNVMRAPLK 214 Query: 379 ------------------DGSQ----ERLLVEDSNLQAPTW-----------SPSGRSLI 405 DG + +L P SP G+ + Sbjct: 215 IDMEKLKSKGHYDAGRENDGRGKKRKLHHKRKPGHLARPYISGFGSATTAEVSPDGQKIA 274 Query: 406 FSRKKDGDTGSKLYSIDLNGRNETLINT 433 F R+ T L++ D R +T + + Sbjct: 275 FIRRHKAQT--VLFTFDTETRRQTPVYS 300 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 96/305 (31%), Gaps = 66/305 (21%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 E+G + S + ++ + N + +M +G + + S P+FS + + +AY Sbjct: 32 EEGSWMSLDISPDGKWIAFDLLNDIYIMSAEGGEAKAIL-SGPATQKSPQFSSDGKTLAY 90 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + D ++ + + + R +I +P +S + + + V++ EA +YS Sbjct: 91 IS-DASGHDNIWTASVKGKKRKQISFEERDIISSPAWSPSDEAIIAVVREPEASKVYSST 149 Query: 289 L-----QSNATERLTNTLF--INI-SASYSPDSSQIVFESDREGKEQLYV---------- 330 + + + + + ++ YSPD + + G +YV Sbjct: 150 IREYYVDGSEPKHMVDAPGGRRDVQEPRYSPDGEYLYYTQRVGGDHYVYVNTGLKNFNVM 209 Query: 331 --------------------MQSNG-------------SDQKRISQDKEASYFDPVWSPQ 357 +++G R S SP Sbjct: 210 RAPLKIDMEKLKSKGHYDAGRENDGRGKKRKLHHKRKPGHLARPYISGFGSATTAEVSPD 269 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQER-------------LLVEDSNLQAPTWSPSGRSL 404 G IAF + + + + ++ L ++ + W P R + Sbjct: 270 GQKIAFIRRHKAQTVLFTFDTETRRQTPVYSELSRDLQSDYLPQEHYYPSYAWFPDNRHI 329 Query: 405 IFSRK 409 K Sbjct: 330 AIWSK 334 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSL 404 E S+ SP G IAF + I +M +G + + +L + ++P +S G++L Sbjct: 33 EGSWMSLDISPDGKWIAFDLLND----IYIMSAEGGEAKAILSGPATQKSPQFSSDGKTL 88 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA--SDPQWVG 444 + G +++ + G+ I+ S P W Sbjct: 89 AYISDASGH--DNIWTASVKGKKRKQISFEERDIISSPAWSP 128 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 28/236 (11%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 L D D+ FEP S ++ ++ Y ++DDE + D + + Sbjct: 400 LWQKDLTNNTPITAFTGEDKSEFEPALSFDRDELVYVSWDDETGSELRYRDLKTGQETVL 459 Query: 253 IGNFRSMILAPRFSSNGKRALI-------SVQKDE-AMDIYSVDLQSNATERLTNTLFIN 304 + I P FS +GK S+ IY+ ++ E + + Sbjct: 460 VST-PGTIRDPVFSHSGKLLAYRIMPADPSMSAPGPEAGIYTYTFET---EEIDFVEEAD 515 Query: 305 ISASYSPDSSQIVFE---SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +S D S++ + R+ KE L+ + NG +Q+ + + D SP + Sbjct: 516 KLLQFSKDDSKLYYIGAGRGRDKKEGLFSVSLNGENQEEHAYTTSYNVRDLDISPDEKWL 575 Query: 362 AFT----------KFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFS 407 AF K S E + + + + ++ + +L +WS G +L ++ Sbjct: 576 AFKDNNDLFIAPFKKSDEAWEVSEIDTENAKMIAPLGGYDL---SWSNDGLTLRWT 628 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 99/348 (28%), Gaps = 90/348 (25%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLT--PSRDQILFEPRFSPNQQKVAYATYDDE 234 I V E S + +++ DG+ +++ P + + EPR+SP+ + + Y Sbjct: 134 IAVVREPEASKVYSSTIREYYVDGSEPKHMVDAPGGRRDVQEPRYSPDGEYLYYTQRVGG 193 Query: 235 DILRVYLMDTRI------------------------------------------DRAPKR 252 D + + Sbjct: 194 DHYVYVNTGLKNFNVMRAPLKIDMEKLKSKGHYDAGRENDGRGKKRKLHHKRKPGHLARP 253 Query: 253 IGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER----LTNTLFINISA- 307 + S +G++ + +++ D ++ L+ L + Sbjct: 254 YISGFGSATTAEVSPDGQKIAFIRRHKAQTVLFTFDTETRRQTPVYSELSRDLQSDYLPQ 313 Query: 308 -------SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA------------- 347 ++ PD+ I S K ++ + D I + Sbjct: 314 EHYYPSYAWFPDNRHIAIWS----KGKILRIDMENGDASTIPFKLTSKHEIQPPIRVQQD 369 Query: 348 ---------SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL--LVEDSNLQAPT 396 + +PVW ++ F S + + ED + P Sbjct: 370 LAPETVDVKTIRNPVWIADDKIVVFRALS----KLWQKDLTNNTPITAFTGEDKSEFEPA 425 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWV 443 S L++ D +TGS+L DL G+ L++TP DP + Sbjct: 426 LSFDRDELVYVSWDD-ETGSELRYRDLKTGQETVLVSTPGTIRDPVFS 472 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 30/250 (12%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + P + + + V + + +++ D + P S + + Sbjct: 380 IRNPVWIADDKIVVF-----RALSKLWQKDLTNNTPITAFTGEDKSEFEPALSFDRDELV 434 Query: 274 ISVQKDEAMDIYSV-DLQSNATERLTNTLFINISASYSPDSSQIVFE--------SDREG 324 DE DL++ L +T +S + + S Sbjct: 435 YVSWDDETGSELRYRDLKTGQETVLVSTPGTIRDPVFSHSGKLLAYRIMPADPSMSAPGP 494 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT---KFSGEKFAIGVMKKDG- 380 + +Y + I +EA +S + + + +K + + +G Sbjct: 495 EAGIYTYTFETEE---IDFVEEADKLLQ-FSKDDSKLYYIGAGRGRDKKEGLFSVSLNGE 550 Query: 381 -SQERLLVEDSNLQAPTWSPSGRSLIFSRKKD-----GDTGSKLYSID-LNGRNETLINT 433 +E N++ SP + L F D + + + ++ N +I Sbjct: 551 NQEEHAYTTSYNVRDLDISPDEKWLAFKDNNDLFIAPFKKSDEAWEVSEIDTENAKMIA- 609 Query: 434 PAYASDPQWV 443 P D W Sbjct: 610 PLGGYDLSWS 619 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 103/322 (31%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAP---KRIGNFRSMILAP--------RFSSN 268 SP+ QK+A+ + ++ DT R + P + + Sbjct: 267 SPDGQKIAFIR-RHKAQTVLFTFDTETRRQTPVYSELSRDLQSDYLPQEHYYPSYAWFPD 325 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATE----RLTN------------TLFINI------- 305 + I + I +D+++ +LT+ L Sbjct: 326 NRHIAIWSKG----KILRIDMENGDASTIPFKLTSKHEIQPPIRVQQDLAPETVDVKTIR 381 Query: 306 SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + + D +VF + +L+ + ++ S F+P S D + + Sbjct: 382 NPVWIADDKIVVFRA----LSKLWQKDLTNNTPITAFTGEDKSEFEPALSFDRDELVYVS 437 Query: 366 FSGE-KFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF----------------- 406 + E + QE +LV ++ P +S SG+ L + Sbjct: 438 WDDETGSELRYRDLKTGQETVLVSTPGTIRDPVFSHSGKLLAYRIMPADPSMSAPGPEAG 497 Query: 407 ---------------------------------SRKKDGDTGSKLYSIDLNGRNET--LI 431 + D L+S+ LNG N+ Sbjct: 498 IYTYTFETEEIDFVEEADKLLQFSKDDSKLYYIGAGRGRDKKEGLFSVSLNGENQEEHAY 557 Query: 432 NTPAYASD----P--QWVGFMD 447 T D P +W+ F D Sbjct: 558 TTSYNVRDLDISPDEKWLAFKD 579 >gi|268317283|ref|YP_003291002.1| WD40 domain-containing protein beta Propeller [Rhodothermus marinus DSM 4252] gi|262334817|gb|ACY48614.1| WD40 domain protein beta Propeller [Rhodothermus marinus DSM 4252] Length = 982 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 17/134 (12%) Query: 256 FRSMI--LAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 F ++ +P +S +G R S + + +D+Y +++ ERLT L+ + ++SPD Sbjct: 395 FPGLVALYSPTWSPDGARLAFSAIDEGGWIDLYVLEVSGGRLERLTRDLYDDRDPAWSPD 454 Query: 313 SSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 +VF SDR L++ N +++ D +P WSP G + F Sbjct: 455 GRYLVFASDRTAWGDRYGMNLFLYDFNTGQIHQLT-DGWRRDREPRWSPDGRYVVFAS-- 511 Query: 368 GEKFAIGVMKKDGS 381 VM+ DG Sbjct: 512 ------AVMEADGR 519 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 38/216 (17%) Query: 198 RDGANIRYLTPSRDQ---ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 D +T R L+ P +SP+ ++A++ D+ + +Y+++ R +R+ Sbjct: 382 YDLEREELVTTYRFPGLVALYSPTWSPDGARLAFSAIDEGGWIDLYVLEVSGGRL-ERLT 440 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL-----QSNATERLTNTLFINISASY 309 P +S +G+ + + + D Y ++L + +LT+ + + Sbjct: 441 RDLYDDRDPAWSPDGRYLVFASDRTAWGDRYGMNLFLYDFNTGQIHQLTDGWRRDREPRW 500 Query: 310 SPDSSQIVFES------DREGKEQLYVMQSN--------------------GSDQKRISQ 343 SPD +VF S R G ++ ++ G +R+ + Sbjct: 501 SPDGRYVVFASAVMEADGRFGPRNIWAVEVAPALPTRPVATAFPETGSEPVGPPVRRLYR 560 Query: 344 DKE--ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 + FDP+W+P G L+ F+ F +F + + Sbjct: 561 LTNLATAAFDPLWTPDGHLL-FSAFEHYRFTVRRIP 595 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 29/148 (19%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 D + + +L + D + I LT + EPR+SP+ + V Sbjct: 450 AWSPDGRYLVFASDRTAWGDRYGMNLFLYDFNTGQIHQLTDG-WRRDREPRWSPDGRYVV 508 Query: 228 YATYDDE-----DILRVYLMDTRIDRAPK----------------------RIGNFRSMI 260 +A+ E ++ ++ + R+ N + Sbjct: 509 FASAVMEADGRFGPRNIWAVEVAPALPTRPVATAFPETGSEPVGPPVRRLYRLTNLATAA 568 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVD 288 P ++ +G L S + + + Sbjct: 569 FDPLWTPDG-HLLFSAFEHYRFTVRRIP 595 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 29/250 (11%) Query: 101 QDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRK--QIIGKKFFSSPASW----RKI 154 W+ G + LV DR + L+D + Q+ W R + Sbjct: 449 PAWSPDG-RYLVFASDRTAWGDRYGMNLFLYDFNTGQIHQLTDGWRRDREPRWSPDGRYV 507 Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR-------YLT 207 + + ++ G F R ++ E + + G+ Y Sbjct: 508 V--FASAVMEA----DGRFGPRNIWAVEVAPALPTRPVATAFPETGSEPVGPPVRRLYRL 561 Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 + F+P ++P+ + A +R P + + P + Sbjct: 562 TNLATAAFDPLWTPDGHLLFSAFEHYRFTVRRIPDVAERLVRPHQQATVALLGSRPPWKP 621 Query: 268 NGKRALIS-VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 G+ + S V++ YS+D+ + I+ SA + + SD G + Sbjct: 622 -GRLSADSGVRRKPYRRRYSLDVAYG-------GISISQSALWGTTGGAALAFSDLLGDD 673 Query: 327 QLYVMQSNGS 336 + YV + Sbjct: 674 RWYVTVFHTG 683 >gi|171679856|ref|XP_001904874.1| hypothetical protein [Podospora anserina S mat+] gi|170939554|emb|CAP64781.1| unnamed protein product [Podospora anserina S mat+] Length = 1108 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 21/242 (8%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + FSP+ ++ A+ D + + + + + +++ + + Sbjct: 749 QTFEGHSGSVRSVAFSPDGSRIVSASNDQ----TIRIWEAKSGKEVRKLEGHSGSVRSVA 804 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G R + S D + I+ +L S ++SPDSS+IV SD Sbjct: 805 FSPDGSRIV-SASDDGTIRIWEA-KSGKEVRKLEGHSNWVRSVAFSPDSSRIVSASD--- 859 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + + ++ + R + S +SP G I + + + I K G + R Sbjct: 860 DGTIRIWEAKSGKEVRKLEGHSGSVRSVAFSPDGSRIV-SASNDQTIRIWEAK-SGKEVR 917 Query: 385 LL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 L + + +SP G ++ + D +++ +G+ + + WV Sbjct: 918 KLEGHSGLVLSVAFSPDGSRIVSASN---DQTIRIWEAK-SGKEVRKLEGHSN-----WV 968 Query: 444 GF 445 F Sbjct: 969 WF 970 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 101/298 (33%), Gaps = 46/298 (15%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 +VS ++ + + + FSP+ ++ A+ D + + Sbjct: 769 RIVSASNDQTIRIWEAKSGKEVRKLEGHSGSVRSVAFSPDGSRIVSASDDG----TIRIW 824 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + + + +++ + + + FS + R + S D + I+ +L Sbjct: 825 EAKSGKEVRKLEGHSNWVRSVAFSPDSSRIV-SASDDGTIRIWEA-KSGKEVRKLEGHSG 882 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 S ++SPD S+IV S+ + + + ++ + R + +SP G I Sbjct: 883 SVRSVAFSPDGSRIVSASN---DQTIRIWEAKSGKEVRKLEGHSGLVLSVAFSPDGSRIV 939 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVEDSNL--------QAPTWSPSGRSLIFSRKKDG-- 412 + + + I K G + R L SN ++ +SP ++ + Sbjct: 940 -SASNDQTIRIWEAK-SGKEVRKLEGHSNWVWFYRNWVRSVAFSPDSSRIVSASDDGTIR 997 Query: 413 -------------DTGSKLYSIDLNGRNETLINTPAYAS------------DPQWVGF 445 + G+ + I NG + LI Y DP+W G+ Sbjct: 998 IWEAASGTCLKAINVGTSVTYISFNGTSRRLITNAGYIKIATVTESPIQPDDPRWHGY 1055 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 15/205 (7%) Query: 219 FSPNQQKV--AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 F+P + +A + +L +++ + + + FS +G R + S Sbjct: 715 FTPANSTIRRLFAGEEPSWVLTKPVVEQNWSPCLQTFEGHSGSVRSVAFSPDGSRIV-SA 773 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D+ + I+ +L S ++SPD S+IV SD + + ++ Sbjct: 774 SNDQTIRIWEA-KSGKEVRKLEGHSGSVRSVAFSPDGSRIVSASD---DGTIRIWEAKSG 829 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-DGSQERLL-VEDSNLQA 394 + R + +SP I G I + + G + R L ++++ Sbjct: 830 KEVRKLEGHSNWVRSVAFSPDSSRIVSASDDGT---IRIWEAKSGKEVRKLEGHSGSVRS 886 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLY 419 +SP G ++ + D +++ Sbjct: 887 VAFSPDGSRIVSASN---DQTIRIW 908 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 120/325 (36%), Gaps = 62/325 (19%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHT--------ISDD----I 162 R++ D+ R+W+ K K++ +K S R +A + SDD I Sbjct: 769 RIVSASNDQ---TIRIWEAKSGKEV--RKLEGHSGSVRSVAFSPDGSRIVSASDDGTIRI 823 Query: 163 YQSITGEK-------GDFNSRILFV--SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI 213 +++ +G++ ++ + F S +VS ++ + + Sbjct: 824 WEAKSGKEVRKLEGHSNWVRSVAFSPDSSRIVSASDDGTIRIWEAKSGKEVRKLEGHSGS 883 Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 + FSP+ ++ A+ D + + + + + +++ ++L+ FS +G R + Sbjct: 884 VRSVAFSPDGSRIVSASNDQ----TIRIWEAKSGKEVRKLEGHSGLVLSVAFSPDGSRIV 939 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINI-------SASYSPDSSQIVFESDREGKE 326 S D+ + I+ +L S ++SPDSS+IV SD +G Sbjct: 940 -SASNDQTIRIWEA-KSGKEVRKLEGHSNWVWFYRNWVRSVAFSPDSSRIVSASD-DGTI 996 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 +++ ++G+ K I+ G + + F+G + + + + Sbjct: 997 RIWEA-ASGTCLKAINV--------------GTSVTYISFNGTSRRL-ITNAGYIKIATV 1040 Query: 387 VEDS-NLQAPTWSP-----SGRSLI 405 E P W G +I Sbjct: 1041 TESPIQPDDPRWHGYGLGQDGSWII 1065 >gi|166713322|ref|ZP_02244529.1| hypothetical protein Xoryp_18265 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 785 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 13/233 (5%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 + + P SP+ VAYA+ + L+ + + P+ + + Sbjct: 220 RPYQVITAGGGFDLTPSLSPDGAMVAYASLTSDRTGTSILVKSTDNAYPRVLETPAPGVS 279 Query: 262 A--PRFSSNGKRALISVQK-DEAMDIYSVDLQSNAT---ERLTNTLFINI-SASYSPDSS 314 P +S +G+ S Q D + + + + ++ S S+SPD+ Sbjct: 280 DRLPAWSPDGREIAFSRQAPDGSCRVMIAAAAATTPAAAREVARCDGADMLSFSWSPDAR 339 Query: 315 QIVFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKFSGEK 370 ++F S G ++ + + ++ A FD P +SP G I F + Sbjct: 340 ALLFGSMTGSYGAARIRRLNLETGQWQTLNYPAHAGDFDYAPRYSPDGHWIVFLRNPQLG 399 Query: 371 FAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 + + G+ ERL + ++ +W P G +IF R+ D ++LY +DL Sbjct: 400 DLWRIPAEGGAAERLTHDTGDIWGWSWLPDGSGVIFGRRV--DIEARLYRLDL 450 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 103/318 (32%), Gaps = 60/318 (18%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYL-TPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 S+ S S+ V D A R L TP+ P +SP+ +++A++ + RV + Sbjct: 248 SLTSDRTGTSILVKSTDNAYPRVLETPAPGVSDRLPAWSPDGREIAFSRQAPDGSCRVMI 307 Query: 242 MDTRIDRAP--KRIGNFRSMIL-APRFSSNGKRALISVQKD--EAMDIYSVDLQSNATER 296 + + + + +S + + L A I ++L++ + Sbjct: 308 AAAAATTPAAAREVARCDGADMLSFSWSPDARALLFGSMTGSYGAARIRRLNLETGQWQT 367 Query: 297 L---TNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 L + + + YSPD IVF + + L+ + + G +R++ D + Sbjct: 368 LNYPAHAGDFDYAPRYSPDGHWIVFLRNPQ-LGDLWRIPAEGGAAERLTHDTGDIWGW-S 425 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKK----------------------------------- 378 W P G + F + + + + Sbjct: 426 WLPDGSGVIFGRRVDIEARLYRLDLLDRSLHDLGVDDAQAPDVAHGHLVFAQRKPQFGVY 485 Query: 379 -------DGS--QERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR--- 426 +G + RL P +P GR L+F+ + G G + G Sbjct: 486 QVIRDTMNGGYIRRRLFSSSGRDDQPMIAPDGRQLVFASNRSGTYGLWWGDVSKPGSVRL 545 Query: 427 NETLINTPAYASDPQWVG 444 E L A+D W Sbjct: 546 IEGLRPDSRQAAD--WSA 561 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 85/292 (29%), Gaps = 52/292 (17%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-ED 235 +LF S + G + ++ + PR+SP+ + + D Sbjct: 341 LLFGSMTGSYGAARIRRLNLETGQWQTLNYPAHAGDFDYAPRYSPDGHWIVFLRNPQLGD 400 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 + R+ A +R+ + I + +G + + D +Y +DL + Sbjct: 401 LWRI----PAEGGAAERLTHDTGDIWGWSWLPDGSGVIFGRRVDIEARLYRLDLLDRSLH 456 Query: 295 ------------------------------------------ERLTNTLFINISASYSPD 312 RL ++ + +PD Sbjct: 457 DLGVDDAQAPDVAHGHLVFAQRKPQFGVYQVIRDTMNGGYIRRRLFSSSGRDDQPMIAPD 516 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEASYFDPVWSPQGDLIAFTKFSGEKF 371 Q+VF S+R G L+ + R+ + + S WS + + Sbjct: 517 GRQLVFASNRSGTYGLWWGDVSKPGSVRLIEGLRPDSRQAADWSADSQRLLVSGSDAAGH 576 Query: 372 A--IGVMKKDGSQERLLVEDSNLQAPTWSPS-GRSLIFSRKKDGDTGSKLYS 420 A V G RL V P + L+ + DG T + LY Sbjct: 577 AALFEVTPSSGKVVRLPVPQPRPLQAIHLPDPDQVLVLAAADDGHTFATLYD 628 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 385 LLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA-YASD--PQ 441 + P+ SP G + ++ TG+ + + ++ TPA SD P Sbjct: 225 ITAGGGFDLTPSLSPDGAMVAYASLTSDRTGTSILVKSTDNAYPRVLETPAPGVSDRLPA 284 Query: 442 WVG 444 W Sbjct: 285 WSP 287 >gi|218782212|ref|YP_002433530.1| Periplasmic component of the Tol biopolymer transport system-like protein [Desulfatibacillum alkenivorans AK-01] gi|218763596|gb|ACL06062.1| Periplasmic component of the Tol biopolymer transport system-like protein [Desulfatibacillum alkenivorans AK-01] Length = 610 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 114/324 (35%), Gaps = 39/324 (12%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D Y + + + + +CV++ DG LT + Sbjct: 57 DSAYPGWGNWNWSSDGAKIVYQVDDSNLSNSSEICVINADGTGFTRLTDNDRCDSHASFV 116 Query: 220 SPNQQKVAY----ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA----PRFSSNGKR 271 PN KV + A+ + +I V + + + A P S +G + Sbjct: 117 WPNNAKVVFQRNVASSGNGEIWIVNVDGSNPTSLTQAHNGPMGGASAGENNPMVSPDGTK 176 Query: 272 ALI---SVQKDEAMDIYSVDLQSNATERLT--NTLFINISAS-YSPDSSQIVF--ESDRE 323 D ++ +D+ + + N I+IS +SPDS + F + Sbjct: 177 VAFRGCVPASDGYAHLFVMDIDGANVKDVAAYNDRIIDISHHCWSPDSKWVCFKACDESV 236 Query: 324 GKEQLYVMQSNGSDQKR-ISQDKEA---------SYFDPVWSPQGDLIAFTKFSGEKFA- 372 G +++ ++++G+ +S +A P WSP G I+ + ++GE + Sbjct: 237 GDARIFKVKADGTAAPVKLSPADDAMPAAWNDWFCQNWPRWSPDGKWISTSLYTGENYND 296 Query: 373 --IGVMKKDGSQERLLVE----------DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I +M DG + ++ D Q+ TWSP + L++S + + L Sbjct: 297 KKIVIMDSDGQNMKTIMAQDGDDDGDNYDWIHQSGTWSPDSKWLVYSMNTVAEGDTALCI 356 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 +++ + P+W Sbjct: 357 SNVDNGAFYQLTKDYEDCQPRWSP 380 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 33/209 (15%) Query: 193 LCVMDRDGANIRYLTPSRDQIL--FEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRA 249 L VMD DGAN++ + D+I+ +SP+ + V + D+ R++ + A Sbjct: 192 LFVMDIDGANVKDVAAYNDRIIDISHHCWSPDSKWVCFKACDESVGDARIFKVKADGTAA 251 Query: 250 PKRIGNFRSMILA----------PRFSSNGKRA---LISVQKDEAMDIYSVDLQSNATER 296 P ++ + A PR+S +GK L + + I +D + Sbjct: 252 PVKLSPADDAMPAAWNDWFCQNWPRWSPDGKWISTSLYTGENYNDKKIVIMDSDGQNMKT 311 Query: 297 LT---------NTLFINISASYSPDSSQIVFESD--REGKEQLYVMQSNGSDQKRISQDK 345 + N +I+ S ++SPDS +V+ + EG L + + ++++D Sbjct: 312 IMAQDGDDDGDNYDWIHQSGTWSPDSKWLVYSMNTVAEGDTALCISNVDNGAFYQLTKDY 371 Query: 346 EASYFDPVWSPQGD----LIAFTKFSGEK 370 E P WSP I F SG Sbjct: 372 E--DCQPRWSPSPKNKPGSILFKGHSGGD 398 >gi|113971218|ref|YP_735011.1| transcriptional regulator domain-containing protein [Shewanella sp. MR-4] gi|113885902|gb|ABI39954.1| transcriptional regulator domain protein [Shewanella sp. MR-4] Length = 716 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 55/277 (19%) Query: 219 FSPNQQKVAYAT-YDDEDILRVYLMDT-RIDRAPKRIG-----NFRSMILAPRFSSNGKR 271 S + Q +AY + ++ + +Y + + D +R+ N+ LA FS +G+ Sbjct: 286 ISADGQYLAYVSSHEAGKVGGIYRLSLVQPDAKAERLSCEAHCNYEDRDLA--FSPDGRW 343 Query: 272 ALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 I+ + + DI+ DL S RLT+ L S++PDS +VF ++ G + Sbjct: 344 LAIARRFSNISEDIFIRDLASANETRLTHGLEDIRGLSWTPDSQSLVFATEDSGSRNGFT 403 Query: 331 MQSNGSDQKRISQDK-------------------------------------------EA 347 + + + + + Sbjct: 404 IDIETAHIRPLDVEGMSYPSSVSDEGELVYHQYRRQFQMAYFSLGESVPGSLFPLLYSGI 463 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 S+ +P +SP+ I F I +G + S + P WSP G + F Sbjct: 464 SHRNPDYSPEAKRIVFVSSDTGYNEIWTSDINGKKLEQHTHLKSRVAYPRWSPDGAKIAF 523 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQW 442 D + G++++ +DL +N T + + + P W Sbjct: 524 IAPDDSNEGNRIFILDLASKNITALASSYHNHGRPSW 560 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 104/311 (33%), Gaps = 32/311 (10%) Query: 145 FSSPASWRKIAHTISD---DIY-------------QSITGEKGDFNSRILFVSESVVSGI 188 FS W IA S+ DI+ + +G + Sbjct: 337 FSPDGRWLAIARRFSNISEDIFIRDLASANETRLTHGLEDIRGLSWTPDSQSLVFATEDS 396 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + +D + A+IR L + P ++ ++ Y Y + + + + + Sbjct: 397 GSRNGFTIDIETAHIRPLDVEG---MSYPSSVSDEGELVYHQYRRQFQMAYFSLGESVPG 453 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + P +S KR + +I++ D+ E+ T+ Sbjct: 454 SLFPLLYSGISHRNPDYSPEAKRIVFVSSDTGYNEIWTSDINGKKLEQHTHLKSRVAYPR 513 Query: 309 YSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD ++I F + D +++++ + ++ ++ P W+ QG + + Sbjct: 514 WSPDGAKIAFIAPDDSNEGNRIFILDLASKNITALAS-SYHNHGRPSWNWQGTAVLASTT 572 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 G I D S R++ A ++ S +FSR + L+ IDL Sbjct: 573 DG----ITEFYLDNSTPRVI--SPLTMAVGFAKSANEFVFSRY----GVNGLWQIDLTQP 622 Query: 427 NETLINTPAYA 437 + P Sbjct: 623 EQVQEIIPGKV 633 >gi|332306167|ref|YP_004434018.1| WD40-like beta Propeller containing protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173496|gb|AEE22750.1| WD40-like beta Propeller containing protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 692 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 22/276 (7%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + FV + K + D + + + P SP++ K+AY + Sbjct: 56 VYFVRNFMDIQNDKKRGNIWKVDKNKVMTPVTNGLHADYSPTLSPDESKLAYISTASGSA 115 Query: 237 -LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT- 294 + + +D+ R+ S + +S +GK S V L Sbjct: 116 QIHIKWLDSGQTGQMTRLTGAPSNL---SWSPDGKMLAFSQFVKGTPKSP-VSLSGKPEG 171 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + ++ Y D + + G Q++V+ + G ++++Q + + W Sbjct: 172 AKWADSAIFIDDLFYRADGAGYL----PAGNSQIFVLSAEGGTPRQLTQGEFDHGGNISW 227 Query: 355 SPQGDLIAFTKFSGEKF-------AIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIF 406 S I F+ + + + L + P+ SP G+ + + Sbjct: 228 SSDSKSIVFSANRHKDSDLELTDDNLYKIDVATGNMLALTDRLGPDNGPSISPDGKLIAY 287 Query: 407 SRK---KDGDTGSKLYSIDLNGRNETLINTPAYASD 439 ++LY +D+NG + TP + Sbjct: 288 LGYDEKYSNYENTQLYVMDVNGGVSRSL-TPQFDRS 322 Score = 73.9 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 56/257 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 S++ ++S + S I + G R + +SP+ + +A++ + Sbjct: 103 SKLAYISTASGSAQIHIKWLDSGQTGQMTRLTGAPSNL-----SWSPDGKMLAFSQFVKG 157 Query: 235 DI---------------------------------------LRVYLMDTRIDRAPKRIGN 255 +++++ + Sbjct: 158 TPKSPVSLSGKPEGAKWADSAIFIDDLFYRADGAGYLPAGNSQIFVLSAEGGTPRQLTQG 217 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDI-------YSVDLQSNATERLTNTLFINISAS 308 +SS+ K + S + + D+ Y +D+ + LT+ L + S Sbjct: 218 EFDHGGNISWSSDSKSIVFSANRHKDSDLELTDDNLYKIDVATGNMLALTDRLGPDNGPS 277 Query: 309 YSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD I + E QLYVM NG + ++ + S W+ + Sbjct: 278 ISPDGKLIAYLGYDEKYSNYENTQLYVMDVNGGVSRSLTPQFDRSVGSIKWASDSKGLYM 337 Query: 364 TKFSGEKFAIGVMKKDG 380 + + + G Sbjct: 338 SYDDKGETYVAYQPISG 354 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 168 GEKGDFNSRILFVSESVVSGI----IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 +S+ + S + ++L +D N+ LT R P SP+ Sbjct: 224 NISWSSDSKSIVFSANRHKDSDLELTDDNLYKIDVATGNMLALTD-RLGPDNGPSISPDG 282 Query: 224 QKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 + +AY YD++ + ++Y+MD + F + + +++S+ K +S Sbjct: 283 KLIAYLGYDEKYSNYENTQLYVMDVNGGVSRSLTPQFDRSVGSIKWASDSKGLYMSYDDK 342 Query: 280 EAMDIYSVDLQS 291 + + Sbjct: 343 GETYVAYQPISG 354 >gi|116622819|ref|YP_824975.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] gi|116225981|gb|ABJ84690.1| peptidase S41 [Candidatus Solibacter usitatus Ellin6076] Length = 1137 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 117/301 (38%), Gaps = 26/301 (8%) Query: 159 SDDIYQSITGEKGDFNS-RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 S+DIY G+K F S R ++ + ++ G +I + I++E Sbjct: 215 SNDIYPMWIGDKIYFLSDRSGPMTLFRYDPQSRKVDELIHNTGKDIMSASAGPGGIVYE- 273 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +F Q + ++ + + N + S G RA+ Sbjct: 274 QF---GQVHIFDIASGKEHAVNIDIAADLTEVRPHFQNVARELRNSAISPTGVRAVF--- 327 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNG- 335 + +I +V LTNT + + S ++SPD I + SD G+ L++ NG Sbjct: 328 -EGHGEILTVPADKGEVRNLTNTPGVMDRSPAWSPDGKTIAYFSDESGEYALHIKAQNGA 386 Query: 336 SDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ- 393 + K+I+ K A YFDP WSP IAF + + + ++ + + + Sbjct: 387 GETKKIALAGKSAFYFDPKWSPDSKAIAF---NDNQDNLWTVEVASGKLTKVDTNYLYDL 443 Query: 394 --APTWSPSGRSLIFSRKKDGD-TGSKLYSIDLNGRNETLINT------PAYASDPQWVG 444 WS + + F R +YS++ +G++ + + PA+ D Q++ Sbjct: 444 NRGFNWSGDSKWIAFERFLPNRLRAILIYSVE-SGKSVQITDGMSDARNPAFDRDGQYLY 502 Query: 445 F 445 F Sbjct: 503 F 503 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 30/206 (14%) Query: 245 RIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 R R+ + +FS +GK + + D +D+++V + +R+T + Sbjct: 50 RDGGVASRLTSGPGFETEAKFSPDGKTLAFTGEYDGNVDVFTVPVAGGVPKRVTYHPDGD 109 Query: 305 ISASYSPDSSQIVFESDR---EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +S D S+IVF S+R QLY + + G + +SP G + Sbjct: 110 RVVGWSADGSRIVFRSNRLSQSRYTQLYTVAAEGGLPDVL---PLPLACMGAYSPDGKRM 166 Query: 362 AFTKFSGEKFA-------------------IGVMK-KDGSQERLLVEDSNLQAPTWSPSG 401 + G +FA + V+ D S ++ DSN P W G Sbjct: 167 VYAPLDGGQFAPGFTNFVAWKRYRGGEASYLWVVNFADLSTVKIPRTDSNDIYPMWI--G 224 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRN 427 + F + G L+ D R Sbjct: 225 DKIYFLSDRSGPMT--LFRYDPQSRK 248 Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 113/296 (38%), Gaps = 49/296 (16%) Query: 179 FVSESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 FV+ G + L V++ D + ++ + I P + K+ + + D + Sbjct: 183 FVAWKRYRGGEASYLWVVNFADLSTVKIPRTDSNDI--YPMW--IGDKIYFLS-DRSGPM 237 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL 297 ++ D + + + I N I++ G + ++ ++ D+ S + Sbjct: 238 TLFRYDPQSRKVDELIHNTGKDIMSASAGPGG--IVY----EQFGQVHIFDIASGKEHAV 291 Query: 298 TNTLFIN---ISASY------------SPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 + + + + SP + VF EG ++ + ++ + + ++ Sbjct: 292 NIDIAADLTEVRPHFQNVARELRNSAISPTGVRAVF----EGHGEILTVPADKGEVRNLT 347 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER----LLVEDSNLQAPTWS 398 P WSP G IA+ ++A+ + ++G+ E L + + P WS Sbjct: 348 NTPGVMDRSPAWSPDGKTIAYFSDESGEYALHIKAQNGAGETKKIALAGKSAFYFDPKWS 407 Query: 399 PSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP---------AYASDPQWVGF 445 P +++ F+ +D L+++++ T ++T ++ D +W+ F Sbjct: 408 PDSKAIAFNDNQD-----NLWTVEVASGKLTKVDTNYLYDLNRGFNWSGDSKWIAF 458 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 18/285 (6%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGA 201 ++ ++ H DI + G G + V + SG + D Sbjct: 241 RYDPQSRKVDELIHNTGKDIMSASAGPGGIVYEQFGQVHIFDIASGKEHAVNIDIAADLT 300 Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRS-MI 260 +R + + L SP + + + + L + + N M Sbjct: 301 EVRPHFQNVARELRNSAISPTGVRAVFEGHGE------ILTVPADKGEVRNLTNTPGVMD 354 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER---LTNTLFINISASYSPDSSQIV 317 +P +S +GK + ++ + L +SPDS I Sbjct: 355 RSPAWSPDGKTIAYFSDESGEYALHIKAQNGAGETKKIALAGKSAFYFDPKWSPDSKAIA 414 Query: 318 FESDREGKEQLYVMQSNGSDQKRISQDKEASYF-DPVWSPQGDLIAFTKFSGEKFA-IGV 375 F + ++ L+ ++ ++ + WS IAF +F + I + Sbjct: 415 FN---DNQDNLWTVEVASGKLTKVDTNYLYDLNRGFNWSGDSKWIAFERFLPNRLRAILI 471 Query: 376 MKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKD-GDTGSKL 418 + + + + S+ + P + G+ L F+ + G T S L Sbjct: 472 YSVESGKSVQITDGMSDARNPAFDRDGQYLYFTASTNYGPTSSGL 516 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 51/349 (14%), Positives = 99/349 (28%), Gaps = 87/349 (24%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL- 237 F +E+ S K + DG + P + + P+ +V + D I+ Sbjct: 64 FETEAKFSPDGKTLAFTGEYDGNVDVFTVPVAGGVPKRVTYHPDGDRVVGWSADGSRIVF 123 Query: 238 -RVYLMDTRIDRAPKRIGNFRSMILAP-------RFSSNGKRALIS-------------- 275 L +R + + P +S +GKR + + Sbjct: 124 RSNRLSQSRYTQLYTVAAEGGLPDVLPLPLACMGAYSPDGKRMVYAPLDGGQFAPGFTNF 183 Query: 276 -----VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 + EA ++ V+ +T ++ T +I + +I F SDR G L+ Sbjct: 184 VAWKRYRGGEASYLWVVNFADLSTVKIPRTDSNDIYPMWI--GDKIYFLSDRSGPMTLFR 241 Query: 331 MQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS----------------------- 367 + + P G I + +F Sbjct: 242 YDPQSRKVDELIHNTGKDIMSASAGPGG--IVYEQFGQVHIFDIASGKEHAVNIDIAADL 299 Query: 368 ----------------------------GEKFAIGVMKKDGSQERLLVEDSN--LQAPTW 397 I + D + R L ++P W Sbjct: 300 TEVRPHFQNVARELRNSAISPTGVRAVFEGHGEILTVPADKGEVRNLTNTPGVMDRSPAW 359 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNET--LINTPAYASDPQWVG 444 SP G+++ + + G+ + + + G + L A+ DP+W Sbjct: 360 SPDGKTIAYFSDESGEYALHIKAQNGAGETKKIALAGKSAFYFDPKWSP 408 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 42/334 (12%), Positives = 101/334 (30%), Gaps = 85/334 (25%) Query: 87 FKQKITNPDSIPRFQDWNSLGAQVLV--TGR---VIKEGKDRLRVE----FRLWDVKDRK 137 F + P ++ R+ S L+ TG+ G + E ++D+ K Sbjct: 229 FLSDRSGPMTLFRYDP-QSRKVDELIHNTGKDIMSASAGPGGIVYEQFGQVHIFDIASGK 287 Query: 138 QIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS-----RILFVSESVVSGII--K 190 + H ++ DI +T + F + R +S + V + Sbjct: 288 E-----------------HAVNIDIAADLTEVRPHFQNVARELRNSAISPTGVRAVFEGH 330 Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED-ILRVYLMDTRIDRA 249 + + D +R LT + + P +SP+ + +AY + + + L + + + Sbjct: 331 GEILTVPADKGEVRNLTNTPGVMDRSPAWSPDGKTIAYFSDESGEYALHIKAQNGAGETK 390 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-------------- 295 + + P++S + K D ++++V++ S Sbjct: 391 KIALAGKSAFYFDPKWSPDSKAIAF---NDNQDNLWTVEVASGKLTKVDTNYLYDLNRGF 447 Query: 296 ---------------------------------RLTNTLFINISASYSPDSSQIVFESDR 322 ++T+ + + ++ D + F + Sbjct: 448 NWSGDSKWIAFERFLPNRLRAILIYSVESGKSVQITDGMSDARNPAFDRDGQYLYFTAST 507 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + + S A + + SP Sbjct: 508 NYGPTSSGLDMTSDEHEVTSNVYLAVLPNNISSP 541 >gi|238495090|ref|XP_002378781.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220695431|gb|EED51774.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 422 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 119/356 (33%), Gaps = 80/356 (22%) Query: 143 KFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGAN 202 + + R I H+ S +Q +G +G ++ ++ L + D DG N Sbjct: 27 QQMGLDLNVRDIPHSPSPSAHQ--SGRRGLGKDGVMLMNRIAPGTSK---LYISDIDGGN 81 Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 R L S + FSP+ Q V + + + D + + ++ + Sbjct: 82 ERPLL-SDPVFEYHASFSPDGQWVLFTSERNGDGNSDIWRVRTKGSDLQPLVTTPAVEDS 140 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESD 321 S++G A + + +I+ +DL + LT+T I + SPDS I F SD Sbjct: 141 VVLSTSGTHAAYASTEGMIANIWVLDLVTGNRWNLTDTPAIAATTNKTSPDSQWIAFSSD 200 Query: 322 REGKEQ--------------------LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 R K ++ ++ +G+ +++ + + P WS G I Sbjct: 201 RNTKWAGHGWETFMGLSGWEHTQELSIFAIRPDGTGFRKVIGKEGYALGSPSWSADGKRI 260 Query: 362 AF-------TKFSGEKFAI-----------------GVMKKDGSQERL------------ 385 + T + F + V++ + S ++ Sbjct: 261 VYYEMTRETTWDAHSSFDVNSANSSIVSVDFATGTDRVVEVNTSGVKIYPQYLGSTSSIG 320 Query: 386 ---------------LVEDSNLQAPTWSPSGRSLIF--SRKKDGDTGSKLYSIDLN 424 ++ ++P WSP G+ +++ LYS D N Sbjct: 321 YLLKGTTKEGIYSGTTYYNTTARSPAWSPDGKRVVYEKVSWDIRPQNKLLYSWDAN 376 >gi|197105058|ref|YP_002130435.1| hypothetical protein PHZ_c1595 [Phenylobacterium zucineum HLK1] gi|196478478|gb|ACG78006.1| hypothetical protein PHZ_c1595 [Phenylobacterium zucineum HLK1] Length = 855 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 10/227 (4%) Query: 204 RYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP 263 S P SP+ ++VAYA R + + + AP Sbjct: 329 FRPLTSEPGFKTFPALSPDGRQVAYAHAALPFAPRDIHLRAVAGGEAAAVTSGPDDDFAP 388 Query: 264 RFSSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 ++ +G R D + + RL ++ D+ +V Sbjct: 389 AWAPDGDRIAFLRRSPDGGCAVMVAIVPRGGERRLAPCREAGAHPTWL-DARTLVVADTP 447 Query: 323 EGK--EQLYVMQSNGSDQKRISQDKEASYFD--PVWSPQGDLIAFTK-FSGEKFAIGVMK 377 G +L + + + + ++ + D P SP G +AF + I V+ Sbjct: 448 AGGGLPRLSAIDATTGEVRALTAPPPDTLGDNEPQASPDGRQVAFRRTLRFGADEIVVLD 507 Query: 378 KDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 +ER L D WSP GR+L+F+ + G G L+ +D Sbjct: 508 VRTGRERTLTRDGWKAAGYVWSPDGRNLLFASNRGGGLG--LWRLDA 552 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 103/297 (34%), Gaps = 53/297 (17%) Query: 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL--FEPRFSPNQQKVAYAT 230 + V +G L +D +R LT L EP+ SP+ ++VA+ Sbjct: 435 WLDARTLVVADTPAGGGLPRLSAIDATTGEVRALTAPPPDTLGDNEPQASPDGRQVAFRR 494 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQ 290 + ++D R R + + +S +G+ L + + + ++ +D + Sbjct: 495 TLRFGADEIVVLDVRTGRE-RTLTRDGWKAAGYVWSPDGRNLLFASNRGGGLGLWRLDAR 553 Query: 291 --------------------------------------------SNATERLTNTLFINIS 306 S A E T + Sbjct: 554 RPAEPEQVSLGLGVVSFLHMSADRTGQAVVEIARPRSGLVRLGPSGAPEARIVTASNDWD 613 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 PD + + SDR G L++ + G R+++ + P WS G +AF Sbjct: 614 PVTGPDGA-VAHISDRAGAPDLWI-SAPGGGATRLTEGLGSYVSSPAWSGDGRSLAFIAV 671 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 G + I + +DGS+ L +D ++P + P GR + + ++ +L ++D Sbjct: 672 IGRQADIFTVGRDGSRLLRLTDDGRDKRSPVFGPRGR-VYYVERRG--QAWRLMTVD 725 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 86/278 (30%), Gaps = 53/278 (19%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA---PRFSSNGKRA 272 P + + + + A L + + L P+ S +G++ Sbjct: 432 HPTW-LDARTLVVADTPAGGGLPRLSAIDATTGEVRALTAPPPDTLGDNEPQASPDGRQV 490 Query: 273 LISVQ-KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + A +I +D+++ LT + +SPD ++F S+R G L+ + Sbjct: 491 AFRRTLRFGADEIVVLDVRTGRERTLTRDGWKAAGYVWSPDGRNLLFASNRGGGLGLWRL 550 Query: 332 QS-------------------------NGSDQKRISQDKEA------------------S 348 + G I++ + + Sbjct: 551 DARRPAEPEQVSLGLGVVSFLHMSADRTGQAVVEIARPRSGLVRLGPSGAPEARIVTASN 610 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFS 407 +DPV P G +A + + G RL S + +P WS GRSL F Sbjct: 611 DWDPVTGPDG-AVAHISDRAGAPDLWISAPGGGATRLTEGLGSYVSSPAWSGDGRSLAFI 669 Query: 408 RKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 + ++++ +G R L + P + Sbjct: 670 AVIG--RQADIFTVGRDGSRLLRLTDDGRDKRSPVFGP 705 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 99/313 (31%), Gaps = 22/313 (7%) Query: 107 GAQVLV-----TGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD 161 GA +V TGR +D + +W R + WR A ++ Sbjct: 499 GADEIVVLDVRTGRERTLTRDGWKAAGYVWSPDGRNLLFASNRGGGLGLWRLDARRPAEP 558 Query: 162 IYQSITGEKGDFNSRILFVSESVVS----GIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 + ++ G + + + + ++ L + GA + + + ++P Sbjct: 559 --EQVSLGLGVVSFLHMSADRTGQAVVEIARPRSGLVRLGPSGAPEARIVTASN--DWDP 614 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 P+ A A D + A + S + +P +S +G+ Sbjct: 615 VTGPDG---AVAHISDRAGAPDLWISAPGGGATRLTEGLGSYVSSPAWSGDGRSLAFIAV 671 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD 337 DI++V + RLT+ S + P ++ + R +L + Sbjct: 672 IGRQADIFTVGRDGSRLLRLTDDGRDKRSPVFGPRG-RVYYVERRGQAWRLMTVDPAAPG 730 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 + +P G L + + G + + + DG R E ++ Sbjct: 731 AAPAPVPGGQGWRSVQAAPSGAL--YGQRQGAE---TIGRLDGGAWRPAAEVWPYESWAA 785 Query: 398 SPSGRSLIFSRKK 410 S G ++ + + Sbjct: 786 SDDGVFILDTSAR 798 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 340 RISQDKEASYFDPVWSPQGDLIAFTK----FSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 R + P SP G +A+ F+ + + + + AP Sbjct: 330 RPLTSEPGFKTFPALSPDGRQVAYAHAALPFAPRDIHLRAVAGG-EAAAVTSGPDDDFAP 388 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 W+P G + F R+ + + +I G L + P W+ Sbjct: 389 AWAPDGDRIAFLRRSPDGGCAVMVAIVPRGGERRLAPCREAGAHPTWL 436 >gi|262190170|ref|ZP_06048451.1| protease-related protein [Vibrio cholerae CT 5369-93] gi|262033945|gb|EEY52404.1| protease-related protein [Vibrio cholerae CT 5369-93] Length = 1039 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 78/239 (32%), Gaps = 37/239 (15%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ QK+A+ + + P +S + + + + Sbjct: 2 SPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 55 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------- 326 D++ + +Q + RLT +I ++S D Q+ F S R G + Sbjct: 56 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMA 115 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF------------SGEKFAIG 374 QLY + + G ++R+ + D SP I +T S I Sbjct: 116 QLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIW 172 Query: 375 VMKK-DGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 G ++ + P WS G S+ + ++ G ++ +G I Sbjct: 173 QWSPRTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NIWQQRFDGSEPVQIT 229 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 30/203 (14%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ + A I+ V Q LT + + + +SPDS I F +DR G Sbjct: 2 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 57 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-------------A 372 ++++ G + +R++ A +S G + F+ Sbjct: 58 GDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQ 116 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 117 LYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWS 175 Query: 423 -LNGRNETLINTPAYASDPQWVG 444 G++ + +P W Sbjct: 176 PRTGKHTQITTFRGEDRNPVWSA 198 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 68 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 125 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ ++ Sbjct: 126 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGAVSDATRDIWQWSPRTGKHT 182 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 183 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNIWQQRFDGSEPVQITDHQKLPVRFLSAS 242 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 243 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 302 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 303 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 362 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 363 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 393 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 296 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 349 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 350 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 405 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 406 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 465 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 466 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 511 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 215 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 274 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 275 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 330 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 331 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 388 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 389 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 445 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 446 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 491 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 334 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 393 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 394 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 449 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 450 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 503 >gi|115374818|ref|ZP_01462092.1| prolyl oligopeptidase family protein [Stigmatella aurantiaca DW4/3-1] gi|310817617|ref|YP_003949975.1| prolyl oligopeptidase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368127|gb|EAU67088.1| prolyl oligopeptidase family protein [Stigmatella aurantiaca DW4/3-1] gi|309390689|gb|ADO68148.1| Prolyl oligopeptidase family protein [Stigmatella aurantiaca DW4/3-1] Length = 681 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 118/331 (35%), Gaps = 71/331 (21%) Query: 175 SRILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 RI +V + + + L ++ DG+N R LT D +P ++P+ + + + + Sbjct: 40 QRIAYVLRTTDLEANRGRTDLWLVHADGSNSRQLTSHPDG-DNQPVWAPDGKSLFFLSTR 98 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ--------------- 277 +V+ + P ++ + + S +G R ++++ Sbjct: 99 -GGSSQVWRLPID-GGEPTQVTQLPLDVGSFALSPDGSRLAVALEVFPDCATLECTPERV 156 Query: 278 -------------------------KDEAMDIYSVDLQSNATERLTNTLFINI------- 305 + +++V + A L + + Sbjct: 157 EARKKAKTRGRVYDTLFIRHWDAWNEGLRSHLFAVPVAGGAAVDLMKGMDADSPTKPYGG 216 Query: 306 --SASYSPDSSQIVFESDREGKEQLYVMQSN--------GSDQKRISQDKEASYFDPVWS 355 +++PD +VF + G+++ + + + ++++ A+ PV+S Sbjct: 217 PEEFTFTPDGQGVVFTARDVGRQEAWSTDLDLFLAPVDGKTPPRKLTTANRATDTQPVFS 276 Query: 356 PQGDLIAFTKFSGEKFA---IGVMKKD--GSQERLLVEDSNLQAP--TWSPSGRSLIFSR 408 P G +A+ F + V+ + ER+L + A WS G++L S Sbjct: 277 PDGKTLAYLAMERPGFEADRLRVILRAWPSGAERVLTAQWDRSADGLAWSADGKTLFTSA 336 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 +G + ++ID+ + P +A+D Sbjct: 337 YNEGQHPA--FAIDVASGQVRALTAPGHAAD 365 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 86/249 (34%), Gaps = 65/249 (26%) Query: 260 ILAPRFSSNGKRALISVQ------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + +PR S +G+R ++ D++ V + + +LT+ + ++PD Sbjct: 30 VSSPRVSPDGQRIAYVLRTTDLEANRGRTDLWLVHADGSNSRQLTSHPDGDNQPVWAPDG 89 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA----------- 362 + F S R G Q++ + +G + +++Q SP G +A Sbjct: 90 KSLFFLSTRGGSSQVWRLPIDGGEPTQVTQL-PLDVGSFALSPDGSRLAVALEVFPDCAT 148 Query: 363 ------------------------FTKF-----SGEKFAIGVMKKDGSQERLLVEDSNLQ 393 F + G + + + G L++ + Sbjct: 149 LECTPERVEARKKAKTRGRVYDTLFIRHWDAWNEGLRSHLFAVPVAGGAAVDLMKGMDAD 208 Query: 394 AP----------TWSPSGRSLIFSRKKDGD-----TGSKLYSIDLNGRN-ETLINTPAYA 437 +P T++P G+ ++F+ + G T L+ ++G+ + T A Sbjct: 209 SPTKPYGGPEEFTFTPDGQGVVFTARDVGRQEAWSTDLDLFLAPVDGKTPPRKLTTANRA 268 Query: 438 SD--PQWVG 444 +D P + Sbjct: 269 TDTQPVFSP 277 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 89/298 (29%), Gaps = 67/298 (22%) Query: 214 LFEPRFSPNQQKVAYA----TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + PR SP+ Q++AY + + +++ + P ++ +G Sbjct: 30 VSSPRVSPDGQRIAYVLRTTDLEANRGRTDLWLVHADGSNSRQLTSHPDGDNQPVWAPDG 89 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------------ 317 K + + ++ + + ++T S + SPD S++ Sbjct: 90 KSLFFLSTRGGSSQVWRLPIDGGEPTQVTQLPLDVGSFALSPDGSRLAVALEVFPDCATL 149 Query: 318 -----------------------FESDREG-----KEQLYVMQSNGSDQKRISQDKEAS- 348 F + + L+ + G + + +A Sbjct: 150 ECTPERVEARKKAKTRGRVYDTLFIRHWDAWNEGLRSHLFAVPVAGGAAVDLMKGMDADS 209 Query: 349 ----YFDP---VWSPQGDLIAFTKFSGEKFAIGVMKKDG--------SQERLLVE--DSN 391 Y P ++P G + FT + D + R L + Sbjct: 210 PTKPYGGPEEFTFTPDGQGVVFTARDVGRQEAWSTDLDLFLAPVDGKTPPRKLTTANRAT 269 Query: 392 LQAPTWSPSGRSLIF-SRKKDGDTGSKLYSI---DLNGRNETLINTPAYASDP-QWVG 444 P +SP G++L + + ++ G +L I +G L ++D W Sbjct: 270 DTQPVFSPDGKTLAYLAMERPGFEADRLRVILRAWPSGAERVLTAQWDRSADGLAWSA 327 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 66/184 (35%), Gaps = 18/184 (9%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQ--------SNATERLTN-TLFINISASYSPDSS 314 F+ +G+ + + + + +S DL +LT + +SPD Sbjct: 221 TFTPDGQGVVFTARDVGRQEAWSTDLDLFLAPVDGKTPPRKLTTANRATDTQPVFSPDGK 280 Query: 315 QIVFES-DREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 + + + +R G + ++ + ++ ++ + S WS G + + ++ Sbjct: 281 TLAYLAMERPGFEADRLRVILRAWPSGAERVLTAQWDRSADGLAWSADGKTLFTSAYNEG 340 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQAPTWSP-SGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + Q R L + P +G ++++ + L+S+ +G + Sbjct: 341 QHPAFAIDVASGQVRALTAPGHAADVQ--PLAGGRILYTFDTL-KAPADLFSLAGDGTDA 397 Query: 429 TLIN 432 + Sbjct: 398 RPLT 401 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 11/186 (5%) Query: 192 SLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE----DILRVYLMDTRI 246 L + DG R LT + +P FSP+ + +AY + D LRV L Sbjct: 247 DLFLAPVDGKTPPRKLTTANRATDTQPVFSPDGKTLAYLAMERPGFEADRLRVILRAWPS 306 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTN-TLFINI 305 + +S++GK S + +++D+ S LT ++ Sbjct: 307 GAERVLTAQWDRSADGLAWSADGKTLFTSAYNEGQHPAFAIDVASGQVRALTAPGHAADV 366 Query: 306 SASYSPDSSQIVFESDREGKE-QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 +I++ D L+ + +G+D + +++ + + + F Sbjct: 367 QPL---AGGRILYTFDTLKAPADLFSLAGDGTDARPLTRANPEALAAIRFG-DSEPFTFA 422 Query: 365 KFSGEK 370 ++GEK Sbjct: 423 GWNGEK 428 >gi|197118869|ref|YP_002139296.1| surface protein [Geobacter bemidjiensis Bem] gi|197088229|gb|ACH39500.1| surface protein, putative [Geobacter bemidjiensis Bem] Length = 970 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 21/256 (8%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFR--S 258 + + L PRFSP+ ++A+ D + V + D K + FR S Sbjct: 305 FTPLTSVNDQGENLTNPRFSPDGSRIAFTRRDPNEHTSVVVTDASGK---KVLAQFRRQS 361 Query: 259 MILAPRFSSNGKRALISVQK-----DEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 + +S +GK + + + D+Y DL T R+T + A +PD Sbjct: 362 SDGSLSWSPDGKSVYFTQAEIDRGFNTYQDLYVRDLGRGETRRITKGERL-GDAQIAPDG 420 Query: 314 SQIVFESDREGKEQLYVMQSNGSD---QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + G + L ++ + + ++++ P +SP G I + Sbjct: 421 KTVAAVISSRGSQNLALLDLSQGEKPQPRQVTSYSLERVASPNFSPDGRSICYVLTDNTG 480 Query: 371 F-AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 A+ + +R L P + P G ++ + + G L++ DL G Sbjct: 481 MSALRIYDTVDKTDRALFRASHTFAFPVFGPDGSTIFYISDETG--VFNLFAYDLKGGAS 538 Query: 429 TLIN---TPAYASDPQ 441 ++ T A P Sbjct: 539 YQVSHLLTGAIQPAPA 554 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 78/212 (36%), Gaps = 4/212 (1%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA-YATYD 232 + + ++ +++ + + RD ++ + L + + +P+ + VA + Sbjct: 371 DGKSVYFTQAEIDRGFNTYQDLYVRDLGRGETRRITKGERLGDAQIAPDGKTVAAVISSR 430 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFR-SMILAPRFSSNGKRALISVQKD-EAMDIYSVDLQ 290 L + + P+++ ++ + +P FS +G+ + + + D Sbjct: 431 GSQNLALLDLSQGEKPQPRQVTSYSLERVASPNFSPDGRSICYVLTDNTGMSALRIYDTV 490 Query: 291 SNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 L + PD S I + SD G L+ G ++S + Sbjct: 491 DKTDRALFRASHTFAFPVFGPDGSTIFYISDETGVFNLFAYDLKGGASYQVSHLLTGA-I 549 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 P +P G + + +S + F I M+ D S+ Sbjct: 550 QPAPAPDGSSMLLSSYSSKGFKIARMELDRSR 581 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 16/157 (10%) Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF 363 + +SPD S+I F R+ E V+ ++ S +K ++ +++S WSP G + F Sbjct: 319 TNPRFSPDGSRIAFTR-RDPNEHTSVVVTDASGKKVLAQFRRQSSDGSLSWSPDGKSVYF 377 Query: 364 TKFS-GEKFA----IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 T+ F + V + R + + L +P G+++ G L Sbjct: 378 TQAEIDRGFNTYQDLYVRDLGRGETRRITKGERLGDAQIAPDGKTVAAVISSRGSQNLAL 437 Query: 419 YSID---------LNGRNETLINTPAYASDPQWVGFM 446 + + + + +P ++ D + + ++ Sbjct: 438 LDLSQGEKPQPRQVTSYSLERVASPNFSPDGRSICYV 474 >gi|291485687|dbj|BAI86762.1| hypothetical protein BSNT_04770 [Bacillus subtilis subsp. natto BEST195] Length = 657 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 49/222 (22%) Query: 259 MILAPRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPD 312 + P+++ +G RA + +I+ + ++ + T+ + +SPD Sbjct: 15 SVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPD 74 Query: 313 SSQIVFESDREG-KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F SDREG QLY+M + G + ++++ D P+WSP G+ I T GE Sbjct: 75 GCTLAFISDREGDAAQLYMMSAEGGEARKLT-DIPYGVSKPIWSPDGESILVTVSLGEGG 133 Query: 372 AIG------------------VMKKDGSQER-------------------LLVEDSNLQA 394 I K+DG L ++ Sbjct: 134 NIDDREKTEQDSYEPVEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHKADHGD 193 Query: 395 PTWSPSGRSLIFSRK----KDGDTGSKLYSIDLNGRNETLIN 432 P +SP G+ L+FS D +Y + L + + Sbjct: 194 PAFSPDGKWLVFSANLTETDDASKPHDVYIMSLESGDLKQVT 235 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 101/317 (31%), Gaps = 72/317 (22%) Query: 175 SRILFVSESVVSGIIKNSLCVMDR---DGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +R +V V + + G ++ + ++ +PR+SP+ +A+ + Sbjct: 26 TRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWT--HGEKRSTDPRWSPDGCTLAFISD 83 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ-------------- 277 + D ++Y+M +++ + + P +S +G+ L++V Sbjct: 84 REGDAAQLYMMSAE-GGEARKLTDIPYGVSKPIWSPDGESILVTVSLGEGGNIDDREKTE 142 Query: 278 ----------------------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQ 315 + + V ++S + LT+ + ++SPD Sbjct: 143 QDSYEPVEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHKADHGDPAFSPDGKW 202 Query: 316 IVFES------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 +VF + D +Y+M D K+++ + + P G +A Sbjct: 203 LVFSANLTETDDASKPHDVYIMSLESGDLKQVTPHRGSFGSSSFS-PDGRYLALLGNEKE 261 Query: 367 --SGEKFAIGVMKKDGSQERLLVE----------------DSNLQAPTWSPSGRSLIFSR 408 + + + + L E Q P W+ + Sbjct: 262 YKNATLSKAWLYDIEQGRLTCLTEMLDVHLADALIGDSLIGGAEQRPIWTKDSQGFYVIG 321 Query: 409 KKDGDTGSKLYSIDLNG 425 G TG +Y I + G Sbjct: 322 TDQGSTG--IYYISIEG 336 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 80/240 (33%), Gaps = 49/240 (20%) Query: 214 LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNG 269 + +P+++P+ + AY Y + I + PR+S +G Sbjct: 16 VTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPDG 75 Query: 270 KRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD------- 321 ++ A +Y + + +LT+ + +SPD I+ Sbjct: 76 CTLAFISDREGDAAQLYMMSAEGGEARKLTDIPYGVSKPIWSPDGESILVTVSLGEGGNI 135 Query: 322 ----------------------REGKE-------QLYVMQSNGSDQKRISQDKEASYFDP 352 R+GK QL ++ + K ++ K A + DP Sbjct: 136 DDREKTEQDSYEPVEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGEMKELTSHK-ADHGDP 194 Query: 353 VWSPQGDLIAFTKF------SGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 +SP G + F+ + + + +M + + + + + ++SP GR L Sbjct: 195 AFSPDGKWLVFSANLTETDDASKPHDVYIMSLESGDLKQVTPHRGSFGSSSFSPDGRYLA 254 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 9/105 (8%) Query: 348 SYFDPVWSPQGDLIAFTKFSGEK------FAIGVMKKDGSQERLLVED-SNLQAPTWSPS 400 S DP ++P G A+ K + I + + P WSP Sbjct: 15 SVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWTHGEKRSTDPRWSPD 74 Query: 401 GRSLIFSRKKDGDTGSKLYSIDLNGRNET-LINTPAYASDPQWVG 444 G +L F ++GD ++LY + G L + P S P W Sbjct: 75 GCTLAFISDREGD-AAQLYMMSAEGGEARKLTDIPYGVSKPIWSP 118 >gi|94971219|ref|YP_593267.1| peptidase S9, prolyl oligopeptidase active site region [Candidatus Koribacter versatilis Ellin345] gi|94553269|gb|ABF43193.1| peptidase S9, prolyl oligopeptidase active site region [Candidatus Koribacter versatilis Ellin345] Length = 688 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 125/353 (35%), Gaps = 86/353 (24%) Query: 162 IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 + + G + + S+ + N + ++ G R LT + F RFSP Sbjct: 35 VAEPYLSPDGKWAA-FTVTDVSLETNKKTNHIWIVPVAGGEARQLTNYSGEDNF--RFSP 91 Query: 222 NQQKVAYATYDDEDILRVYLMD-----TRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 + + A A D E +VY+ D + P+++ + + + A +S +G+ L Sbjct: 92 DGKS-ALAITDAEGSSQVYVQDFDTTTGTLTGDPRKVTSISTEVSAATWSPDGRSILFVS 150 Query: 277 -------------QKDE---------------------------AMDIYSVDLQSNATER 296 Q+D+ ++ L+ Sbjct: 151 AVWPDCKDDACNKQRDDERSQSKVKAQIFTHLLYRHWNAYGNGKRSHLFIQSLEGGEPLD 210 Query: 297 LTNTLFINISA---------SYSPDSSQIVFESD------REGKEQLYVMQSNGSDQKRI 341 LT ++ S+SPD +I + S+ ++V+ G K+I Sbjct: 211 LTPGDH-DVPPFSLGGQDQYSFSPDGKEIAYASNLDEVEATSTNTDIFVVPVTGGTPKKI 269 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFS-----GEKFAIGVMKKDGSQERLLVE--DSNLQA 394 S + P++SP G IAF + ++F + + ++ + L + D +++ Sbjct: 270 ST-SPGADSTPLYSPDGKYIAFRSQARAGYESDRFRLMLYERATGKTTELTQGFDGWVES 328 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 W P+ R L F+ + G+ +Y ++L G L W GF D Sbjct: 329 IVWHPNSRGLFFTSELKGEAP--VYWVELQGHPIEL-----------WAGFND 368 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 84/308 (27%), Gaps = 59/308 (19%) Query: 155 AHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 A +++ + D S + S + S + Sbjct: 75 ARQLTNYSGEDNFRFSPDGKSALAITDAEGSSQVYVQDFDTTTGTLTGDPRKVTSISTEV 134 Query: 215 FEPRFSPNQQKVAYAT------------------------------YDDEDILRVYLMDT 244 +SP+ + + + + + Y Sbjct: 135 SAATWSPDGRSILFVSAVWPDCKDDACNKQRDDERSQSKVKAQIFTHLLYRHWNAYGNGK 194 Query: 245 RIDRAPKRIGNFRSMILAP----------------RFSSNGKRALISVQKDE------AM 282 R + + + L P FS +GK + DE Sbjct: 195 RSHLFIQSLEGGEPLDLTPGDHDVPPFSLGGQDQYSFSPDGKEIAYASNLDEVEATSTNT 254 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-REG----KEQLYVMQSNGSD 337 DI+ V + ++++ + + + YSPD I F S R G + +L + + Sbjct: 255 DIFVVPVTGGTPKKISTSPGADSTPLYSPDGKYIAFRSQARAGYESDRFRLMLYERATGK 314 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW 397 ++Q + VW P + FT + + ++ G L Sbjct: 315 TTELTQGFDGWVESIVWHPNSRGLFFTSELKGEAPVYWVELQGHPIELWA--GFNDGCQV 372 Query: 398 SPSGRSLI 405 +P+G L+ Sbjct: 373 TPAGTFLV 380 >gi|319901098|ref|YP_004160826.1| peptidase S41 [Bacteroides helcogenes P 36-108] gi|319416129|gb|ADV43240.1| peptidase S41 [Bacteroides helcogenes P 36-108] Length = 1084 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 R S +GK + D IY V ++ +LT + +SPDS QI F SDR Sbjct: 29 RISPDGKEIAFCYKGD----IYKVPVKGGTAMQLTTQDSYECTPVWSPDSKQIAFASDRY 84 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----------A 372 G ++VM +NG +R++ + A ++P G I F+ + Sbjct: 85 GNFDIFVMPANGGTARRLTTNS-AGELPSTFTPDGKYILFSASIQDAATSALFPTTAMTE 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDG-----------DTGSKLYSI 421 + + G + ++ +A + +G F + + G ++ Sbjct: 144 LYKVPSTGGRTEQVLGTP-AEAVCFGKTGDKF-FYQDRKGFEDEWRKHHTSSITRDVWMY 201 Query: 422 DL-NGRNETLINTPAYASDPQWVG 444 D+ G++ L +P Sbjct: 202 DIRTGKHTNLTRREGEDRNPVLSP 225 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 35/222 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R SP+ +++A+ DI +V + ++ S P +S + K+ + Sbjct: 29 RISPDGKEIAFCY--KGDIYKVPVK----GGTAMQLTTQDSYECTPVWSPDSKQIAFASD 82 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKE 326 + DI+ + RLT + ++++PD I+F + Sbjct: 83 RYGNFDIFVMPANGGTARRLTTNSAGELPSTFTPDGKYILFSASIQDAATSALFPTTAMT 142 Query: 327 QLYVMQSNGSDQKRIS-QDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAI 373 +LY + S G +++ EA F GD + S + Sbjct: 143 ELYKVPSTGGRTEQVLGTPAEAVCFGKT----GDKFFYQDRKGFEDEWRKHHTSSITRDV 198 Query: 374 GVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDT 414 + + L + + P SP G +L F +++G T Sbjct: 199 WMYDIRTGKHTNLTRREGEDRNPVLSPDGETLFFLSERNGGT 240 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 94/263 (35%), Gaps = 32/263 (12%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 +R+L+ S + L + + + Y + ++ + R DR F S Sbjct: 263 HPVRFLSISNEGTLC---YGYDGE--IYTQQNGASPQKLDVEIIRDDRPQIAGFTFSSGA 317 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 + S +GK+ V+ +++ T+++T T S+ PD+ + + S Sbjct: 318 TSGTVSPDGKQIAFIVRG----EVFVTSTDYTTTKQITATAAREAGLSFGPDNRTLAYAS 373 Query: 321 DREGKEQLYVM------QSNGSDQKRISQD-----KEASYFDPVWSPQGDLIAFTKFSGE 369 +R G QL++ N + I ++ P +SP G +AF + Sbjct: 374 ERNGNWQLFLASIVRKEDPNFPNATLIKEEALLPSTTVKRAYPQFSPDGKELAFIEDRN- 432 Query: 370 KFAIGVMKKDGSQERLLVEDSNLQA------PTWSPSGRS--LIFSRKKDGDTGSK-LYS 420 + V+ R + + S +WSP G+ L F K L S Sbjct: 433 --RLMVLNLKTRNVRQITDGSTWYGTSGGFDYSWSPDGKWFTLEFIGNKHDPYSDVGLVS 490 Query: 421 IDLNGRNETLINTPAYASDPQWV 443 G L N+ + P++V Sbjct: 491 AQGGGEITNLTNSGYTSGSPRFV 513 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 75/216 (34%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +++A+ + + + K+I + F + + + + Sbjct: 321 TVSPDGKQIAFIVRGE------VFVTSTDYTTTKQITATAAREAGLSFGPDNRTLAYASE 374 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINIS------------ASYSPDSSQIVFESDREGK 325 ++ ++ + N I +SPD ++ F DR Sbjct: 375 RNGNWQLFLASIVRKEDPNFPNATLIKEEALLPSTTVKRAYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++I+ + FD WSP G + F + + +G++ Sbjct: 432 NRLMVLNLKTRNVRQITDGSTWYGTSGGFDYSWSPDGKWFTLEFIGNKHDPYSDVGLVSA 491 Query: 379 DGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 G E L +P + G +++F+ ++ G Sbjct: 492 QGGGEITNLTNSGYTSGSPRFVLDGNAILFTTERYG 527 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 119/356 (33%), Gaps = 52/356 (14%) Query: 114 GRVIKEGKD-RLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTI--SDDIYQSITGEK 170 G V +GK V ++ V K+ ++ A R+ + + + Sbjct: 320 GTVSPDGKQIAFIVRGEVF-VTSTDYTTTKQITATAA--REAGLSFGPDNRTLAYASERN 376 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G++ + + +L L PS P+FSP+ +++A+ Sbjct: 377 GNWQLFLASIVRKEDPNFPNATLI-------KEEALLPSTTVKRAYPQFSPDGKELAF-- 427 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAP--RFSSNGKR--ALISVQK-DEAMDIY 285 +D + L V + TR R + +S +GK K D D+ Sbjct: 428 IEDRNRLMVLNLKTRNVRQITDGSTWYGTSGGFDYSWSPDGKWFTLEFIGNKHDPYSDVG 487 Query: 286 SVDLQSNAT-ERLTNTLFINISASYSPDSSQIVFESDREG-----------KEQLYVMQS 333 V Q LTN+ + + S + D + I+F ++R G L + Sbjct: 488 LVSAQGGGEITNLTNSGYTSGSPRFVLDGNAILFTTERYGMRAHASWGSQDDAMLVFLNQ 547 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----------------FAIGVM 376 + D+ +S++ + + S Q G+ + + Sbjct: 548 DSYDKFCLSKE-DYELRKELESEQKKSKEKDNSKGKNEKKRTGKEDKDTTKVQEIVVDLK 606 Query: 377 KKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 + RL SN+ + S G +L + +G G ++ +DL + L++ Sbjct: 607 NIEDRIVRLTPNSSNMGSALISKDGETLYYLAAFEG--GFDMWKMDLRKKETKLLH 660 >gi|226226684|ref|YP_002760790.1| hypothetical protein GAU_1278 [Gemmatimonas aurantiaca T-27] gi|226089875|dbj|BAH38320.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 441 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 108/267 (40%), Gaps = 38/267 (14%) Query: 214 LFEPRFSPNQQKVAYA-TYDDEDILRVYLMDT--RIDRAPKRIGNFRSMILA--PRFSSN 268 +F+ S + + + + T L +D+ R + S +LA S + Sbjct: 165 VFDASVSSDGRLMVFTCTTGHGTTLCKATLDSVMRAQMPGAILSTAFSALLADQAAISPD 224 Query: 269 GKRALISVQKDEAM-------DIYSVDLQSNATERLT---NTLFINISASYSP---DSS- 314 G + + DIY ++L + RLT S ++SP D + Sbjct: 225 GTQVAFRGWQPGGPVGLFNPGDIYVMNLDGSNLTRLTAAERGRMSYASPAWSPRRIDGAY 284 Query: 315 QIVFESD-REGK----EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-SG 368 ++ + + R+G +L M+++G+ ++ D S +P WSP G +AF + + Sbjct: 285 RLAYAREQRDGDGYAVSRLESMRADGTAMLALTIDTTGSDTEPAWSPDGARVAFVRRGAA 344 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQ--------APTWSPSGRSLIFSRKK---DGDTGSK 417 + + ++ DG R + E + L+ AP+WSP G+ L F + Sbjct: 345 ARGDLWAVQLDG-HARPVAEHALLENELDDVQRAPSWSPDGKRLAFISAHEILGDFYNWQ 403 Query: 418 LYSIDLNGRNETL-INTPAYASDPQWV 443 +YS+D +G + + ++P WV Sbjct: 404 VYSVDASGTDLRRHTSVAREHANPVWV 430 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 36/259 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 S + +A+ T +L + +R+ +F + SS+G+ + + Sbjct: 126 SFERPWLAHTTTPVGGLLSEDVPAETPADTVRRVMDFSG-VFDASVSSDGRLMVFTCTTG 184 Query: 280 EAMDIYSVDLQSNATERL------TNTLF-INISASYSPDSSQIVFESDREGKE------ 326 + L S ++ T + A+ SPD +Q+ F + G Sbjct: 185 HGTTLCKATLDSVMRAQMPGAILSTAFSALLADQAAISPDGTQVAFRGWQPGGPVGLFNP 244 Query: 327 -QLYVMQSNGSDQKRIS--QDKEASYFDPVWSP---QGDL-IAFTK--FSGEKFAIGV-- 375 +YVM +GS+ R++ + SY P WSP G +A+ + G+ +A+ Sbjct: 245 GDIYVMNLDGSNLTRLTAAERGRMSYASPAWSPRRIDGAYRLAYAREQRDGDGYAVSRLE 304 Query: 376 -MKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI- 431 M+ DG+ L + P WSP G + F R + L+++ L+G + Sbjct: 305 SMRADGTAMLALTIDTTGSDTEPAWSPDGARVAFVR-RGAAARGDLWAVQLDGHARPVAE 363 Query: 432 ------NTPAYASDPQWVG 444 P W Sbjct: 364 HALLENELDDVQRAPSWSP 382 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 15/156 (9%) Query: 167 TGEKGDFNSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 + + D R+ + + G + L M DG + LT EP +SP+ + Sbjct: 276 SPRRIDGAYRLAYAREQRDGDGYAVSRLESMRADGTAMLALTIDTTGSDTEPAWSPDGAR 335 Query: 226 VAYATYDDEDILRVYLMDTRIDRAPKRIGNF-------RSMILAPRFSSNGKRALISVQK 278 VA+ R L ++D + + + AP +S +GKR Sbjct: 336 VAFV--RRGAAARGDLWAVQLDGHARPVAEHALLENELDDVQRAPSWSPDGKRLAFISAH 393 Query: 279 D-----EAMDIYSVDLQSNATERLTNTLFINISASY 309 + +YSVD R T+ + + + Sbjct: 394 EILGDFYNWQVYSVDASGTDLRRHTSVAREHANPVW 429 >gi|147767869|emb|CAN71280.1| hypothetical protein VITISV_027089 [Vitis vinifera] Length = 677 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 98/284 (34%), Gaps = 61/284 (21%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRA 249 K L ++ DG+ + T +D+ F +SP ++ V Y + + Sbjct: 389 KGGLKIVKSDGS--KRWTVLKDRTAFYNSWSPTEKHVIYTSXGP------IFESVKATVQ 440 Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASY 309 RI F S D+ DI R N S Sbjct: 441 IARI----------SFDP-------SYLDDDREDI---PADVKILTR--EETGNNAFPSC 478 Query: 310 SPDSSQIVFESDREGKEQLYVMQS-NGSDQKRISQDKEASYFD--PVWSPQGDLIAFTKF 366 SPD +VF S R G + LY++ + NG + I Q E + D P WSP G LIAF+ Sbjct: 479 SPDGKSVVFRSGRSGNKNLYIIDAVNGELEGGIRQLTEGXWIDTMPSWSPDGKLIAFSSN 538 Query: 367 SGEK-----FAIGVMKKDGSQERLL----------VEDSNLQAPTWSPSGRSLIFSRKKD 411 F+I V++ DGS R + V+ + +S L+F+ Sbjct: 539 RHNPDNLNAFSIYVIRPDGSDLRRVYVAGSEGSVDVDRERINHVCFSADCEWLLFAANLG 598 Query: 412 GDTG------------SKLYSIDLNGRNETLINTPAY-ASDPQW 442 G T L+ + L+G + Y P W Sbjct: 599 GXTAEPISLPNQFQPYGDLFVVRLDGSGLKRLTWNGYENGTPAW 642 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 99/318 (31%), Gaps = 36/318 (11%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +S + I+ T + RI + S + +D + Sbjct: 255 SSISEAPRRITPPRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESL 314 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDIL--RVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + + + P SP + Y + E + + R P FS Sbjct: 315 NPNFHHYNPFVSPECGFLGYHRFRGESSPGESTIPHLDPVXSPINELRMLRLNGSFPXFS 374 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLT----NTLFINISASYSPDSSQIVFES-- 320 G D ++S+ ++R T T F N S+SP +++ S Sbjct: 375 PAGDLIAF--NHDFEAKGGLKIVKSDGSKRWTVLKDRTAFYN---SWSPTEKHVIYTSXG 429 Query: 321 ----DREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + Q+ + + S D K +++++ + P SP G + F Sbjct: 430 PIFESVKATVQIARISFDPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRS 489 Query: 366 FSGEKFAIGVMKK-DG---SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSK--- 417 + ++ +G R L E + P+WSP G+ + FS + Sbjct: 490 GRSGNKNLYIIDAVNGELEGGIRQLTEGXWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFS 549 Query: 418 LYSIDLNGRNETLINTPA 435 +Y I +G + + Sbjct: 550 IYVIRPDGSDLRRVYVAG 567 Score = 80.4 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 95/313 (30%), Gaps = 89/313 (28%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVY-------LMDTRIDRAPKRIGNFRSMILAPRFSSN 268 P +S + + + D+ ++ + I AP+RI R P Sbjct: 221 WPTWSGD-SNLYFHRQADDGWWSIFSVTLPEXFQSSSISEAPRRITPPRVHCFTPAAMQG 279 Query: 269 GKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFIN---------------------- 304 KR ++ ++ + I D+ S +T +L N Sbjct: 280 SKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVSPECGFLGYHRFRG 339 Query: 305 -----------------------------ISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +SP I F D E K L +++S+G Sbjct: 340 ESSPGESTIPHLDPVXSPINELRMLRLNGSFPXFSPAGDLIAFNHDFEAKGGLKIVKSDG 399 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGS-------- 381 S KR + K+ + F WSP + +T I + D S Sbjct: 400 S--KRWTVLKDRTAFYNSWSPTEKHVIYTSXGPIFESVKATVQIARISFDPSYLDDDRED 457 Query: 382 ---QERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID-----LNGRNETLI 431 ++L E N P+ SP G+S++F + G LY ID L G L Sbjct: 458 IPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSG--NKNLYIIDAVNGELEGGIRQLT 515 Query: 432 NTPAYASDPQWVG 444 + P W Sbjct: 516 EGXWIDTMPSWSP 528 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 21/198 (10%) Query: 267 SNGKRALISV--QKDEAMDIYSVDLQ-----SNATERLTNTLFINISASYSPDSSQIVFE 319 G + + D++S++L + RLT IN + + ++ +V+ Sbjct: 30 PTGT-IAFTTVGRPHYGFDLFSLNLDPNLINHTSERRLTGGTSINFNGHFLDENQTLVYV 88 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL--IAFTKFSGEKF----AI 373 S+ G ++Y ++ + +++ + Y D G L ++ + + F A+ Sbjct: 89 SEXSGSPRIYQIRPGVTKPEQLLSVPGSLYHDRPIVKNGRLYFVSAHERPEKPFISWSAV 148 Query: 374 GVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN------GR 426 D L +P S SG+ + + G + + + + Sbjct: 149 YSTGLDDKAVVXLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFREXE 208 Query: 427 NETLINTPAYASDPQWVG 444 E + P W G Sbjct: 209 PEKRVVVCERGGWPTWSG 226 >gi|218921786|emb|CAW30774.1| P46GA2.1A [Haemonchus contortus] Length = 387 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 36/227 (15%) Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 A+ + DI +V +D +I S +GK+ + + ++ +D Sbjct: 128 SGHAWDVFPTYDIFKVNEYGNVLD----QITKNDVYDSEAFISPDGKKIVHTSKQSGDLD 183 Query: 284 IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR--------------------E 323 ++ D+ +LT + AS+SPD +IVF + R Sbjct: 184 LWITDINGALKIQLTKAKGYDGGASFSPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVAT 243 Query: 324 GKEQLYVMQSNG--SDQ--KRISQDKEAS--YFDPVWSPQGDLIAFTKFSG----EKFAI 373 K +L VM++N + +RI ++E + P + P I F+ ++ + Sbjct: 244 KKMELSVMKANTVCGNVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHL 303 Query: 374 GVMKKDGSQ-ERLLVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKL 418 ++ +DG+ ER+ A P +S G+ +++S + L Sbjct: 304 YIVNEDGTGLERVTFGSGYFNAFPVFSHDGKKVVWSSNRGSTKEGDL 350 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 36/211 (17%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 + ++ G N+ D E SP+ +K+ + + D + L T I+ A Sbjct: 138 YDIFKVNEYG-NVLDQITKNDVYDSEAFISPDGKKIVHTSKQSGD---LDLWITDINGAL 193 Query: 251 K-RIGNFRSMILAPRFSSNGKRALISVQKDEAMD--------------------IYSVDL 289 K ++ + FS +G++ + + D + + Sbjct: 194 KIQLTKAKGYDGGASFSPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVATKKMELSVMKA 253 Query: 290 QS-----NATERLTNTL--FINISASYSPDSSQIVFESDREGK----EQLYVMQSNGSDQ 338 + L N ++ + Y PD+ +I+F S+ LY++ +G+ Sbjct: 254 NTVCGNVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHLYIVNEDGTGL 313 Query: 339 KRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +R++ PV+S G + ++ G Sbjct: 314 ERVTFGSGYFNAFPVFSHDGKKVVWSSNRGS 344 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 35/207 (16%) Query: 160 DDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRF 219 D I ++ + F S L + D +GA ++ F Sbjct: 151 DQITKNDVYDSEAFISPDGKKIVHTSKQSGDLDLWITDINGA-LKIQLTKAKGYDGGASF 209 Query: 220 SPNQQKVAYATYDDEDILRVYLMD--------------TRIDRAPKRIGNFRS------- 258 SP+ +K+ + ++ + D + +A GN Sbjct: 210 SPDGEKIVFHASRPTGKDKIDIYDHLLKNNLVATKKMELSVMKANTVCGNVTGERILFNR 269 Query: 259 ----MILAPRFSSNGKRALISVQ----KDEAMDIYSVDLQSNATERLTNTLFI-NISASY 309 + P + + KR + S K +Y V+ ER+T N + Sbjct: 270 ERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYHLYIVNEDGTGLERVTFGSGYFNAFPVF 329 Query: 310 SPDSSQIVFESDRE----GKEQLYVMQ 332 S D ++V+ S+R G L++ Sbjct: 330 SHDGKKVVWSSNRGSTKEGDLNLFIAD 356 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 25/207 (12%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAM--DIYSVDLQSNATE--RLTNTLFINISA 307 R F + F+S+ + IY ++L +++ + + ++ Sbjct: 16 RQLTFENRNTEAYFNSDDTYLVFQATGYGVDCEQIYRLELSRPVETLAKISTGIGTSAAS 75 Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS 367 + P+S I++ G + + K+++ D S + K Sbjct: 76 FFYPNSVDILY----SGNFHKTRVNA-----KKLTNDNRCPQKVCDSSKAKTDLIIKKMC 126 Query: 368 GEK--------FAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKL 418 + I + + G+ + ++ + + SP G+ ++ + K+ GD L Sbjct: 127 ESGHAWDVFPTYDIFKVNEYGNVLDQITKNDVYDSEAFISPDGKKIVHTSKQSGD--LDL 184 Query: 419 YSIDLNGR-NETLINTPAYASDPQWVG 444 + D+NG L Y + Sbjct: 185 WITDINGALKIQLTKAKGYDGGASFSP 211 >gi|303242868|ref|ZP_07329331.1| Peptidoglycan-binding lysin domain protein [Acetivibrio cellulolyticus CD2] gi|302589587|gb|EFL59372.1| Peptidoglycan-binding lysin domain protein [Acetivibrio cellulolyticus CD2] Length = 461 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 125/315 (39%), Gaps = 28/315 (8%) Query: 140 IGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF----NSRILFVSESVVSGIIKNSLCV 195 I +++ + R S ++ + F + +I+F S K S+ Sbjct: 115 IAQRYNTQVDVIRDANQISSPFLFTGEKLKIPYFLPLGSGKIVFTSL----DNEKYSIRS 170 Query: 196 MDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGN 255 D + L P SP+++K+A+ + + + +Y +T + + Sbjct: 171 FDFQVKEEKVLVSQFVNAGSIPYVSPDEKKLAF--IGENNKVYIYNEETTELISLGQSTE 228 Query: 256 FRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-ASYSPDSS 314 + +M +S++ + + + IY++ T+++T + S + PD Sbjct: 229 YSTMN----WSADSIKLVYVT--PGNISIYNI-----QTKKITTIDQPDSSYPQWFPDGK 277 Query: 315 QIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAI 373 +++F+S D G +QLY ++ +GS++K+I + Y + SP G I +T S I Sbjct: 278 ELLFQSPDSSGIKQLYRIREDGSNKKQIGNNIWNFYNNVELSPDGSFILYTTPSASVSII 337 Query: 374 GVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSR--KKDGDTGSKLYSIDLNGRNET 429 ++ + + + P WS +I+S + G S++ +L GRN Sbjct: 338 YTLEINTGKIHQVPSGPQGKDYYPKWSTDSTRIIYSSTNYRPGSFYSQINIAELQGRNYQ 397 Query: 430 LINTPAYASDP-QWV 443 S P W+ Sbjct: 398 TYAVSNCFSTPVSWL 412 >gi|291006476|ref|ZP_06564449.1| amidohydrolase [Saccharopolyspora erythraea NRRL 2338] Length = 1067 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 19/189 (10%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G ++ D +++V ++ RLT AS++PD S +V + EG Sbjct: 2 SPDGSTVVV----DALSTLWAVPIRGGEGRRLTPHAMEATQASWAPDGSSVVCQVYSEGN 57 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 LY++ + G +R++ + + +P +SP G IAF+ G ++ I + + Sbjct: 58 FHLYLVPT-GGTPRRLT-EGPHDHREPSFSPDGRRIAFSSDRGGRYGIHIFDLATGRIAP 115 Query: 386 LVEDSNLQA-PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL-------INTPAYA 437 ++ P WSP G + + + +++ G L + P + Sbjct: 116 WTAPIGEESQPRWSPDGSRMAVVVD-----NAVIDAVNEAGERTRLAEATGARLYAPGWN 170 Query: 438 SDPQWVGFM 446 + + ++ Sbjct: 171 PEGSTIAYV 179 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 102/315 (32%), Gaps = 69/315 (21%) Query: 191 NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAP 250 ++L + G R LTP + ++P+ V Y + + +L P Sbjct: 14 STLWAVPIRGGEGRRLTPHAMEATQA-SWAPDGSSVVCQVYSEGNF---HLYLVPTGGTP 69 Query: 251 KRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYS 310 +R+ P FS +G+R S + I+ DL + T + +S Sbjct: 70 RRLTEGPHDHREPSFSPDGRRIAFSSDRGGRYGIHIFDLATGRIAPWTAPIGEESQPRWS 129 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-- 368 PD S++ D + + G ++ R+++ A + P W+P+G IA+ + G Sbjct: 130 PDGSRMAVVVD---NAVIDAVNEAG-ERTRLAEATGARLYAPGWNPEGSTIAYVRMDGLL 185 Query: 369 ---EKFAIGVMKKDGSQERLLVEDSNLQAPTW--------SPSG------------RSLI 405 + + G+ ED APTW + G R + Sbjct: 186 PRNQGAGSAQVVVGGTVVSAPDEDVFPFAPTWLSATRLLYTADGRIRARELPAGGHRDIA 245 Query: 406 FS-------------------------------RKKDGDTGS-----KLYSIDLNGRNET 429 FS GD + L+ DL GR + Sbjct: 246 FSLSAPVRTPEPTAPAAFPEAGRHPVHGIAGPVLSPGGDRIAFCALGDLWVSDLAGRAQR 305 Query: 430 LINTPAYASDPQWVG 444 L + + DP W Sbjct: 306 LTHDRFHVCDPAWSP 320 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 53/271 (19%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 RI F S+ + + + D I T + +PR+SP+ ++A + Sbjct: 90 RIAFSSDRGG----RYGIHIFDLATGRIAPWTAPIGE-ESQPRWSPDGSRMAVVVDNA-- 142 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-----VQKDEAMDIYSVDLQ 290 V + + + AP ++ G + +++ V + Sbjct: 143 ---VIDAVNEAGERTRLAEATGARLYAPGWNPEGSTIAYVRMDGLLPRNQGAGSAQVVVG 199 Query: 291 SNATERLTNTLFINISASYSP---DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 + ++ ++P ++++++ +D ++ + + I+ A Sbjct: 200 GTVV----SAPDEDVFP-FAPTWLSATRLLYTAD----GRIRARELPAGGHRDIAFSLSA 250 Query: 348 SYF----------------------DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 PV SP GD IAF + V G +RL Sbjct: 251 PVRTPEPTAPAAFPEAGRHPVHGIAGPVLSPGGDRIAFCALGD----LWVSDLAGRAQRL 306 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGS 416 + ++ P WSP G + + + G TGS Sbjct: 307 THDRFHVCDPAWSPDGDRIAYCTDRSGTTGS 337 >gi|329961886|ref|ZP_08299900.1| WD40-like protein [Bacteroides fluxus YIT 12057] gi|328531326|gb|EGF58170.1| WD40-like protein [Bacteroides fluxus YIT 12057] Length = 1085 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 34/231 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 R SPN ++A+ DI +V ++ S P +S +GK+ + Sbjct: 29 RISPNGTEIAFCY--KGDIYKV----PATGGTAIQLTTQDSYECTPIWSPDGKQIAFASD 82 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGKE 326 + DI+ + +RLT + ++++PD Q++F + Sbjct: 83 RYGNFDIFMMPSGGGNAQRLTTHSANELPSAFTPDGKQVLFSASIQDPASSALFPTGAMT 142 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF------------TKFSGEKFAIG 374 +LY + S G +++ A S GD + S + Sbjct: 143 ELYKVPSTGGRTEQVL-GTPAESVCFDKS--GDKFYYQDRKGFEDEWRKHHTSSITRDVW 199 Query: 375 VMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + + L + + + P SP G+ L F +++G T +YS ++ Sbjct: 200 MYDIQTGKHTNLTQREGEDRNPVLSPDGQVLFFLSERNGGT-FNVYSFPVS 249 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 105/293 (35%), Gaps = 34/293 (11%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ------QKVA 227 + ++LF G + + +I+ +T + + S + Sbjct: 226 DGQVLFFLSERNGGTFNVYSFPVSQ-PQSIKEVTSFKTHPVRFLSISDDGTLCYGYDGEI 284 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y ++ + R D+ +F + + S +GK+ V+ +++ Sbjct: 285 YTQQPGSSPQKLNVEIVRDDQPQMANLDFSTGATSATVSPDGKQVAFIVRG----EVFVT 340 Query: 288 DLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSD---------- 337 T+++T+T +++PD+ + + S+R+G QLY+ + + Sbjct: 341 STDYTTTKQITHTASREAGLTFAPDNRTLAYASERDGNWQLYLAKIARKEDLNFPNATLI 400 Query: 338 -QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA-- 394 ++ + P +SP G +AF + + V+ D + R + + S + Sbjct: 401 KEEVLLPSTTVERTYPQFSPDGKELAFIEDRN---RLMVLNLDTKKVRQVTDGSTWYSTG 457 Query: 395 ----PTWSPSGRS--LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 +WSP G+ L F + D S + + G + + T + + Sbjct: 458 GGFDYSWSPDGKWFTLEFIGNRH-DPYSDIGLVSAQGDSPIVNLTNSGYTSGS 509 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 77/216 (35%), Gaps = 30/216 (13%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ ++VA+ + + + K+I + S F+ + + + + Sbjct: 321 TVSPDGKQVAFIVRGE------VFVTSTDYTTTKQITHTASREAGLTFAPDNRTLAYASE 374 Query: 278 KDEAMDIYSV------DLQS------NATERLTNTLFINISASYSPDSSQIVFESDREGK 325 +D +Y DL L +T +SPD ++ F DR Sbjct: 375 RDGNWQLYLAKIARKEDLNFPNATLIKEEVLLPSTTVERTYPQFSPDGKELAFIEDR--- 431 Query: 326 EQLYVMQSNGSDQKRISQDKE----ASYFDPVWSPQGDL--IAFTKFSGEKF-AIGVMKK 378 +L V+ + ++++ FD WSP G + F + + IG++ Sbjct: 432 NRLMVLNLDTKKVRQVTDGSTWYSTGGGFDYSWSPDGKWFTLEFIGNRHDPYSDIGLVSA 491 Query: 379 DGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 G L +P + G +++F+ ++ G Sbjct: 492 QGDSPIVNLTNSGYTSGSPRFVLDGNAILFTTERYG 527 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 81/211 (38%), Gaps = 32/211 (15%) Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 K + + G LT +D P +SP+ +++A+A+ + +++M + Sbjct: 41 YKGDIYKVPATGGTAIQLTT-QDSYECTPIWSPDGKQIAFASDRYGN-FDIFMMPSG-GG 97 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQ-----------KDEAMDIYSVDLQSNATERL 297 +R+ + L F+ +GK+ L S ++Y V TE++ Sbjct: 98 NAQRLTTHSANELPSAFTPDGKQVLFSASIQDPASSALFPTGAMTELYKVPSTGGRTEQV 157 Query: 298 TNTLFINISASYSPDSSQIVFESDREG-------------KEQLYVMQSNGSDQKRISQD 344 T ++ + + ++ DR+G +++ ++Q Sbjct: 158 LGTPAESV--CFDKSGDKFYYQ-DRKGFEDEWRKHHTSSITRDVWMYDIQTGKHTNLTQ- 213 Query: 345 KEASYFDPVWSPQGDLIAF-TKFSGEKFAIG 374 +E +PV SP G ++ F ++ +G F + Sbjct: 214 REGEDRNPVLSPDGQVLFFLSERNGGTFNVY 244 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 17/181 (9%) Query: 152 RKIAHTISDD--IYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPS 209 R+ T + D + G++ + ++ +L L PS Sbjct: 356 REAGLTFAPDNRTLAYASERDGNWQLYLAKIARKEDLNFPNATLI-------KEEVLLPS 408 Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNF--RSMILAPRFSS 267 P+FSP+ +++A+ +D + L V +DT+ R + +S Sbjct: 409 TTVERTYPQFSPDGKELAF--IEDRNRLMVLNLDTKKVRQVTDGSTWYSTGGGFDYSWSP 466 Query: 268 NGKRA---LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESDRE 323 +GK I + D DI V Q + LTN+ + + S + D + I+F ++R Sbjct: 467 DGKWFTLEFIGNRHDPYSDIGLVSAQGDSPIVNLTNSGYTSGSPRFVLDGNAILFTTERY 526 Query: 324 G 324 G Sbjct: 527 G 527 >gi|225437689|ref|XP_002279803.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 677 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 50/257 (19%) Query: 190 KNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDR 248 K L ++ DG+ + T +D+ F +SP ++ V Y + + ++ + RI Sbjct: 389 KGGLKIVKSDGS--KRWTVLKDRTAFYNSWSPTEKHVIYTSVGPIFESVKATVQIARISF 446 Query: 249 APKRIGNFR---------------SMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 P + + R P S +GK + + ++Y +D + Sbjct: 447 DPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVNGE 506 Query: 294 T----ERLTNTLFINISASYSPDSSQIVFESDREGKEQ-----LYVMQSNGSDQKRISQD 344 +LT +I+ S+SPD I F S+R + +YV++ +GSD +R+ Sbjct: 507 LEGGIRQLTEGPWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVYVA 566 Query: 345 KEASYFDPV--------WSPQGDLIAFTKFSGE----------KFA----IGVMKKDGSQ 382 D +S + + F G +F + V++ DGS Sbjct: 567 GSEGSVDVDRERINHVCFSADCEWLLFAANLGGMTAEPISLPNQFQPYGDLFVVRLDGSG 626 Query: 383 ERLLV-EDSNLQAPTWS 398 + L P W Sbjct: 627 LKRLTWNGYENGTPAWH 643 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 99/318 (31%), Gaps = 36/318 (11%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 +S + I+ T + RI + S + +D + Sbjct: 255 SSISEAPRRITPPRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESL 314 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDIL--RVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 + + + P SP + Y + E + + R P FS Sbjct: 315 NPNFHHYNPFVSPECGFLGYHRFRGESSPGESTIPHLDPVVSPINELRMLRLNGSFPSFS 374 Query: 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLT----NTLFINISASYSPDSSQIVFES-- 320 G D ++S+ ++R T T F N S+SP +++ S Sbjct: 375 PAGDLIAF--NHDFEAKGGLKIVKSDGSKRWTVLKDRTAFYN---SWSPTEKHVIYTSVG 429 Query: 321 ----DREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPVWSPQGDLIAFTK 365 + Q+ + + S D K +++++ + P SP G + F Sbjct: 430 PIFESVKATVQIARISFDPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRS 489 Query: 366 FSGEKFAIGVMKK-DG---SQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSK--- 417 + ++ +G R L E + P+WSP G+ + FS + Sbjct: 490 GRSGNKNLYIIDAVNGELEGGIRQLTEGPWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFS 549 Query: 418 LYSIDLNGRNETLINTPA 435 +Y I +G + + Sbjct: 550 IYVIRPDGSDLRRVYVAG 567 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 98/313 (31%), Gaps = 89/313 (28%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDT-------RIDRAPKRIGNFRSMILAPRFSSN 268 P +S + + + D+ ++ ++ I AP+RI R P Sbjct: 221 WPTWSGD-SNLYFHRQADDGWWSIFSVNLPEGFQSSSISEAPRRITPPRVHCFTPAAMQG 279 Query: 269 GKRALISVQKDEA--MDIYSVDLQSNATERLTNTLFIN---------------------- 304 KR ++ ++ + I D+ S +T +L N Sbjct: 280 SKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVSPECGFLGYHRFRG 339 Query: 305 -----------------------------ISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 S+SP I F D E K L +++S+G Sbjct: 340 ESSPGESTIPHLDPVVSPINELRMLRLNGSFPSFSPAGDLIAFNHDFEAKGGLKIVKSDG 399 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG------EKFAIGVMKKDGS-------- 381 S KR + K+ + F WSP + +T I + D S Sbjct: 400 S--KRWTVLKDRTAFYNSWSPTEKHVIYTSVGPIFESVKATVQIARISFDPSYLDDDRED 457 Query: 382 ---QERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID-----LNGRNETLI 431 ++L E N P+ SP G+S++F + G LY ID L G L Sbjct: 458 IPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSG--NKNLYIIDAVNGELEGGIRQLT 515 Query: 432 NTPAYASDPQWVG 444 P + P W Sbjct: 516 EGPWIDTMPSWSP 528 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 21/198 (10%) Query: 267 SNGKRALISV--QKDEAMDIYSVDLQ-----SNATERLTNTLFINISASYSPDSSQIVFE 319 G + + D++S++L + RLT IN + + ++ +V+ Sbjct: 30 PTGT-IAFTTVGRPHYGFDLFSLNLDPNLINHTSERRLTGGTSINFNGHFLDENQTLVYV 88 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL--IAFTKFSGEKF----AI 373 S+R G ++Y ++ + +++ + Y D G L ++ + + F A+ Sbjct: 89 SERSGSPRIYQIRPGVTKPEQLLSVPGSLYHDRPIVKNGRLYFVSAHERPEKPFISWSAV 148 Query: 374 GVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN------GR 426 D L +P S SG+ + + G + + + + Sbjct: 149 YSTGLDDKAVVQLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFRESE 208 Query: 427 NETLINTPAYASDPQWVG 444 E + P W G Sbjct: 209 PEKRVVVCERGGWPTWSG 226 >gi|224372378|ref|YP_002606750.1| translocation protein TolB [Nautilia profundicola AmH] gi|223589129|gb|ACM92865.1| protein TolB [Nautilia profundicola AmH] Length = 386 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 112/282 (39%), Gaps = 18/282 (6%) Query: 149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTP 208 A + + H DI + + F R + S V + ++ + D + + + Sbjct: 101 AYFPFLVHKAVYDINEYFGLPQAKFLIRKVIYSMLVAP--KQANIYLSDYTLSYKKRIIS 158 Query: 209 SRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSN 268 + P+++ +Q V Y T + +Y ++ R + K + + + +++ + Sbjct: 159 G--GLNIFPKWADEKQNVIYYT-KLGRLPTLYKLNLRTGKREKILTS-QGLLIVSDVKKD 214 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + L+++ D+Y D+ + ++T I+++ + D +IVF SDR G + Sbjct: 215 --KLLLTLAPTGQPDVYEYDIANKKLTKITKYNGIDVNGKFWGD-DKIVFVSDRYGMPMI 271 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK------FSGEKFAIGVMKKDGSQ 382 + + +R+ + + + + + FS F + ++ K+ Sbjct: 272 FSKDTENGRVQRVLYHGKNQIGVDAY---KNYLVISTRETSNAFSTNTFNLFLVNKNDDS 328 Query: 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + L P +S G S++F ++++ + + ++ N Sbjct: 329 LKRLTFKGQNSYPNFSVDGNSIMFIKRENFYSKIGIIRLNEN 370 >gi|229514560|ref|ZP_04404021.1| protease-related protein [Vibrio cholerae TMA 21] gi|229348540|gb|EEO13498.1| protease-related protein [Vibrio cholerae TMA 21] Length = 1084 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 43/254 (16%) Query: 211 DQILFEPRF------SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 D P + SP+ QK+A+ + + P Sbjct: 32 DSTQARPTWLRDIALSPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPI 85 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 +SS+ + + + D++ + +Q + RLT +I ++S D Q+ F S R G Sbjct: 86 WSSDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145 Query: 325 KE-------------QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF----- 366 + QLY + + G ++R+ + D SP I +T Sbjct: 146 DDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQ 202 Query: 367 -------SGEKFAIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 S I G ++ + P WS G S+ + ++ G + Sbjct: 203 PWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NI 260 Query: 419 YSIDLNGRNETLIN 432 + +G I Sbjct: 261 WQQRFDGSEPVQIT 274 Score = 96.2 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G++ + A I+ V Q LT + + + +S DS I F +DR Sbjct: 45 ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSSDSQSIAFTADRY 100 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF------------ 371 G ++++ G + +R++ A +S G + F+ Sbjct: 101 GLGDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFM 159 Query: 372 -AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYS 420 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 160 AQLYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQ 218 Query: 421 ID-LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 219 WSPLTGKHTQITTFRGEDRNPVWSA 243 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 109/363 (30%), Gaps = 89/363 (24%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E ++S ++ + + + + + G + R I + FS + Q++ Sbjct: 81 SETPIWSSDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPY--AFSADGQQLY 138 Query: 228 YATYDDED------------ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 +++ D + ++Y + R + + I S + L + Sbjct: 139 FSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYT 195 Query: 276 VQK------------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 Q D DI+ + ++T + + +S D S + + S++ Sbjct: 196 NQPSDEQPWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQA 255 Query: 324 GKEQLYVMQSNGSDQKRISQ---------------DKEASYFDPVW-------------- 354 G ++ + +GS+ +I+ D + +W Sbjct: 256 GSFNIWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPV 315 Query: 355 ------SPQGDLIAFTKFSGEKF---------------AIGVMKKDGSQERLLVEDSNLQ 393 P G + + V+ + + + + Sbjct: 316 SIRRSAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGDVYVVSLLSGLTQRITDTPEAE 375 Query: 394 -APTWSPSGRSLIFSRKKDGDT---------GSKLYSIDLNGRNETLINTPAYASDPQWV 443 ++S G LI++ +++G G K +S L+ E ++ T P + Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYS 435 Query: 444 GFM 446 + Sbjct: 436 PNL 438 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 341 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 394 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 395 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 450 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 451 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 510 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 511 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 260 IWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 319 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 320 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 375 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 376 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 433 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 434 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 490 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 491 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 536 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 379 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 439 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 494 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 495 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548 >gi|159901323|ref|YP_001547570.1| hypothetical protein Haur_4812 [Herpetosiphon aurantiacus ATCC 23779] gi|159894362|gb|ABX07442.1| hypothetical protein Haur_4812 [Herpetosiphon aurantiacus ATCC 23779] Length = 362 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 108/314 (34%), Gaps = 62/314 (19%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + + L D +G + L P SP+ +KVAYAT + R+ + D Sbjct: 54 RNPAQQAELWRSDANGQGQQLLVPQVSDYSL----SPDGRKVAYATQAEAQPSRIEMFDL 109 Query: 245 RIDRAPKRIGNFRSMILAPRFSS-NG----KRALISVQKDEAMDIYSVDLQSNATERLTN 299 ++ G+ P +S +G +R IS + ++ + + Sbjct: 110 TQNQVITSTGSADWTGYTPNWSPADGVIVYERRTISTGGVGSPKLWLMQPDGTQVSPVVK 169 Query: 300 TLFINISAS--------------------------------------YSPDSSQIVFESD 321 + + +SPD ++V Sbjct: 170 GGDVVTFGAHWSNTGRLLGFTDPLRNELVLFDFSDVLRRIPFSGDFDWSPDDQRLVISVL 229 Query: 322 REG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGV 375 RE + +L + Q ++ + F PVWSP G IAF + + E + I V Sbjct: 230 RESQAGFRNELILFDLMTEQQTPLTSQTDTDDFTPVWSPDGTKIAFVRRTREVPRGEIWV 289 Query: 376 MKKDGSQERLLVEDSNLQ--APTWSPSGRSLIFSRKKDGDTG--SKLYSIDL--NGRNET 429 + DGS+ R + P W+P + L+++R G S +++++L N Sbjct: 290 VNADGSEPRAITAGGGYDNVDPQWTPDSQQLLWTRLTVGSANVPSAIWTVNLAENSEPRV 349 Query: 430 LINTPAYASDPQWV 443 LI A W+ Sbjct: 350 LIENATQAR---WI 360 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 96/239 (40%), Gaps = 22/239 (9%) Query: 166 ITGEKGDFNSRILFVSESVVSG-IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ 224 T + I++ ++ +G + L +M DG + + D + F +S + Sbjct: 126 YTPNWSPADGVIVYERRTISTGGVGSPKLWLMQPDGTQVSPVVKGGDVVTFGAHWSNTGR 185 Query: 225 KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS----VQKDE 280 + + D LR L+ +RI +S + +R +IS Q Sbjct: 186 LLGFT-----DPLRNELVLFDFSDVLRRIPFSGDFD----WSPDDQRLVISVLRESQAGF 236 Query: 281 AMDIYSVDLQSNATERLTN-TLFINISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSD 337 ++ DL + LT+ T + + +SPD ++I F + ++V+ ++GS+ Sbjct: 237 RNELILFDLMTEQQTPLTSQTDTDDFTPVWSPDGTKIAFVRRTREVPRGEIWVVNADGSE 296 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA----IGVMKK-DGSQERLLVEDSN 391 + I+ DP W+P + +T+ + I + + S+ R+L+E++ Sbjct: 297 PRAITAGGGYDNVDPQWTPDSQQLLWTRLTVGSANVPSAIWTVNLAENSEPRVLIENAT 355 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I F + ++ + +G ++LLV + + SP GR + ++ + + S++ Sbjct: 50 ILFLRNPAQQAELWRSDANGQGQQLLV--PQVSDYSLSPDGRKVAYATQAEAQP-SRIEM 106 Query: 421 IDLNGRNETLINTPAY---ASDPQWVG 444 DL +N+ + +T + P W Sbjct: 107 FDLT-QNQVITSTGSADWTGYTPNWSP 132 >gi|71282123|ref|YP_268181.1| hypothetical protein CPS_1438 [Colwellia psychrerythraea 34H] gi|71147863|gb|AAZ28336.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 698 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 112/284 (39%), Gaps = 24/284 (8%) Query: 176 RILFVSESVV--SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 +I+++ S + +L ++D D + + S D+ +PR+S + +K+A+ + Sbjct: 62 KIVYIRNSNNIMTDDKNKNLWLVDVD-SKKQLPLFSDDKQYSQPRWSADGEKIAFVSNLT 120 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS-VQKDEAMDIYSVDLQSN 292 ++++ + +R + + + + +S +GK + + D+ I + + Sbjct: 121 GS-YQIHVHYLKQNR-TALVSQVQGGVSSLTWSPDGKWLAFTQLVADKRTVIAKMPKKPK 178 Query: 293 ATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + + + + A Y D ++ + G + ++V+ S G ++I+Q Sbjct: 179 GAK-WSKPVVVIDQAYYQADGRGLL----KPGYKHIFVLPSEGGTPRQITQGDFHHKGKL 233 Query: 353 VWSPQGDLIAFTKFSGEKFAI--------GVMKKDGSQERLLVEDSNLQAPTWSPSGRSL 404 W+ + D I F+ + VM DG +L P +S +G L Sbjct: 234 AWNKKSDAIVFSANRISDWEYKSLEGDLFKVMVNDGELTQLTSTPGKEFNPVFSENGEKL 293 Query: 405 IFSRKKDG---DTGSKLYSIDLNGRNETLINT--PAYASDPQWV 443 F + +KL +D R + I + DPQW+ Sbjct: 294 AFLSTSNALNPYRNAKLNIMDWKSRKTSEIASDFDRSIQDPQWL 337 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 55/238 (23%) Query: 260 ILAPRFSSNGKRALIS------VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDS 313 P+ S +G++ + + D+ +++ VD+ S L + +S D Sbjct: 51 ASDPQISPDGEKIVYIRNSNNIMTDDKNKNLWLVDVDSKKQLPLFSDDKQYSQPRWSADG 110 Query: 314 SQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-------- 365 +I F S+ G Q++V + +SQ + WSP G +AFT+ Sbjct: 111 EKIAFVSNLTGSYQIHVHYLKQNRTALVSQV-QGGVSSLTWSPDGKWLAFTQLVADKRTV 169 Query: 366 --------------------------------FSGEKFAIGVMKKDGSQERLLVEDSNLQ 393 I V+ +G R + + Sbjct: 170 IAKMPKKPKGAKWSKPVVVIDQAYYQADGRGLLKPGYKHIFVLPSEGGTPRQITQGDFHH 229 Query: 394 AP--TWSPSGRSLIFSRKKDGDTGSK-----LYSIDL-NGRNETLINTPAYASDPQWV 443 W+ +++FS + D K L+ + + +G L +TP +P + Sbjct: 230 KGKLAWNKKSDAIVFSANRISDWEYKSLEGDLFKVMVNDGELTQLTSTPGKEFNPVFS 287 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 21/158 (13%) Query: 308 SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-------SYFDPVWSPQGDL 360 S+S S ++ F + V + + S EA DP SP G+ Sbjct: 3 SFSRFSCRLAFAVSVLATPFITVANTTVASSTGASNLFEAKDIFSLEYASDPQISPDGEK 62 Query: 361 IAFTKFSGEKF------AIGVMKKDG-SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 I + + S + ++ D Q L +D P WS G + F G Sbjct: 63 IVYIRNSNNIMTDDKNKNLWLVDVDSKKQLPLFSDDKQYSQPRWSADGEKIAFVSNLTGS 122 Query: 414 TGSKLYSIDLNGRNETLINTPA------YASDPQWVGF 445 ++ + N R + ++ D +W+ F Sbjct: 123 YQIHVHYLKQN-RTALVSQVQGGVSSLTWSPDGKWLAF 159 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 91/315 (28%), Gaps = 77/315 (24%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS-RILFVSESVV 185 L DV +KQ+ SDD + + + + +I FVS Sbjct: 80 NLWLVDVDSKKQLP----------------LFSDD--KQYSQPRWSADGEKIAFVSNLTG 121 Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV------ 239 S I + N L + +SP+ + +A+ + + Sbjct: 122 SYQIH-----VHYLKQNRTALVSQVQGGVSSLTWSPDGKWLAFTQLVADKRTVIAKMPKK 176 Query: 240 -----------------YLMDTRIDRAP--KRIGNFRSMILAPR--------------FS 266 Y D R P K I S PR ++ Sbjct: 177 PKGAKWSKPVVVIDQAYYQADGRGLLKPGYKHIFVLPSEGGTPRQITQGDFHHKGKLAWN 236 Query: 267 SNGKRALISVQK-------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE 319 + S + D++ V + +LT+T + +S + ++ F Sbjct: 237 KKSDAIVFSANRISDWEYKSLEGDLFKVMVNDGELTQLTSTPGKEFNPVFSENGEKLAFL 296 Query: 320 SDRE-----GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 S +L +M I+ D + S DP W L+A T K + Sbjct: 297 STSNALNPYRNAKLNIMDWKSRKTSEIASDFDRSIQDPQWLS-SSLLAMTYDDFGKRKLA 355 Query: 375 VMKKDGSQERLLVED 389 + G + + L + Sbjct: 356 TISTKG-KVKDLTDT 369 >gi|319899993|ref|YP_004159721.1| peptidase S41 [Bacteroides helcogenes P 36-108] gi|319415024|gb|ADV42135.1| peptidase S41 [Bacteroides helcogenes P 36-108] Length = 1083 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + F S +P + S +G + + D IY+V + ++T + + Sbjct: 13 LAAFVSAQDSPLWLRNCAISPDGTVVAFTYKGD----IYTVSVTGGRATQITTNAAYDTT 68 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ-----------DKEASYFDPVWS 355 +SPDS I F SDR G +Y++ G + +R++ D F Sbjct: 69 PVWSPDSKWIAFASDRLGSMDVYLVSKEGGEPRRLTTHSGSEMPLAFNDTGHILFSADVM 128 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI--------FS 407 P + I F +G+ + + +G + L ++ + + G L + Sbjct: 129 PSAEAITFPS-NGQFRQVYQVSVEGGRPE-LFSSMPMECISINKDGEMLYQDKKGYEDYW 186 Query: 408 RKKDGDTGSKLYSIDLNGRN---ETLINTPAYASDPQWVG 444 RK ++ + +G+N L +P W Sbjct: 187 RKHQVSPIARDVWMYTSGKNPAYRQLTTFGGEDREPVWAP 226 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 108/318 (33%), Gaps = 44/318 (13%) Query: 160 DDIYQSITGEKGDFNSRILFVSESV-----VSGIIKNSLCVMDRDGANIRYLTPSRDQIL 214 + Y+ +T G+ + N + D + ++ ++ + Sbjct: 206 NPAYRQLTTFGGEDREPVWAPDGKSFYYLSEENGTSNIYQRVPGDPSGVQITHHTKHPVR 265 Query: 215 FEPRFSPNQQ------KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM-ILAPRFSS 267 F + + + Y ++ + I + + S Sbjct: 266 FL-SIAADGRLCYGFNGEIYTLLPGGKSSKMVVSIISDKSDKDLIRSIKGSGATEMVVSP 324 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 +GK ++ D +Y ++ T+++TNT F ++PD +V+ S+R G Q Sbjct: 325 DGKEIAFVLRGD----VYVTSVEYKTTKQVTNTPFQERDIDFAPDGRSLVYASERGGLWQ 380 Query: 328 LYVMQSNGSDQKRISQ----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMK 377 LY D+K + + + + F P +SP G +AF + AI V+ Sbjct: 381 LYTSSIVRKDEKLFTYATELKEERLTNSDVASFRPRYSPDGKEVAFLENRT---AIRVIN 437 Query: 378 KDGSQERLLVEDS-------NLQAPTWSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRN 427 R +++ Q WSP + L+ G + ++ +G+ Sbjct: 438 LKSKVVRTVMDGKYQYSYADGDQWFQWSPDSKWLL--SDYIGIGGWNNKDVVLLNADGKG 495 Query: 428 ETLINTPAYASDPQ--WV 443 E + T + SD WV Sbjct: 496 EMVNLTESGYSDGSAKWV 513 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 45/246 (18%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ VA+ DI V + +I + P +S + K + Sbjct: 30 AISPDGTVVAFTY--KGDIYTVSV----TGGRATQITTNAAYDTTPVWSPDSKWIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGK- 325 + +MD+Y V + RLT + +++ D+ I+F +D G+ Sbjct: 84 RLGSMDVYLVSKEGGEPRRLTTHSGSEMPLAFN-DTGHILFSADVMPSAEAITFPSNGQF 142 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-------AIG---V 375 Q+Y + G + S + G+++ K E + I Sbjct: 143 RQVYQVSVEGGRPELFSSMP---MECISINKDGEMLYQDKKGYEDYWRKHQVSPIARDVW 199 Query: 376 MKKDGSQE---RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 M G +L + P W+P G+S + +++G S +Y + + Sbjct: 200 MYTSGKNPAYRQLTTFGGEDREPVWAPDGKSFYYLSEENGT--SNIY--------QRVPG 249 Query: 433 TPAYAS 438 P+ Sbjct: 250 DPSGVQ 255 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 97/338 (28%), Gaps = 85/338 (25%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + +VV+ K + + G +T P +SP+ + +A+A+ + Sbjct: 31 ISPDGTVVAFTYKGDIYTVSVTGGRATQITT-NAAYDTTPVWSPDSKWIAFASDRLGS-M 88 Query: 238 RVYLMDTRIDRAPKRIGNFRSMIL---------------------APRFSSNGK-RALIS 275 VYL+ ++ P+R+ + A F SNG+ R + Sbjct: 89 DVYLV-SKEGGEPRRLTTHSGSEMPLAFNDTGHILFSADVMPSAEAITFPSNGQFRQVYQ 147 Query: 276 VQKDEAM---------DIYSVDLQSNAT-------------------------------- 294 V + + S++ Sbjct: 148 VSVEGGRPELFSSMPMECISINKDGEMLYQDKKGYEDYWRKHQVSPIARDVWMYTSGKNP 207 Query: 295 --ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 +LT + ++PD + S+ G +Y +I+ + Sbjct: 208 AYRQLTTFGGEDREPVWAPDGKSFYYLSEENGTSNIYQRVPGDPSGVQITHHTKHPVRFL 267 Query: 353 VWSPQGDL------IAFTKFSGEKFAIGVM----KKDGSQERLLVEDSNLQAPTWSPSGR 402 + G L +T G K + V+ K ++ S SP G+ Sbjct: 268 SIAADGRLCYGFNGEIYTLLPGGKSSKMVVSIISDKSDKDLIRSIKGSGATEMVVSPDGK 327 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR-NETLINTPAYASD 439 + F + +Y + + + + NTP D Sbjct: 328 EIAFVLR------GDVYVTSVEYKTTKQVTNTPFQERD 359 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F PR+SP+ ++VA+ ++ + R K ++ ++ Sbjct: 405 LTNSDVASFRPRYSPDGKEVAFLENRTAIRVINLKSKVVRTVMDGKYQYSYADGDQWFQW 464 Query: 266 SSNGKRALISVQKDEAM---DIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K L D+ ++ LT + + + SA + +++ SD Sbjct: 465 SPDSKWLLSDYIGIGGWNNKDVVLLNADGKGEMVNLTESGYSDGSAKWVLGGKAMIWSSD 524 Query: 322 REG 324 R G Sbjct: 525 RAG 527 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 19/69 (27%) Query: 390 SNLQAPTW------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-------PAY 436 S +P W SP G + F+ K +Y++ + G T I T P + Sbjct: 18 SAQDSPLWLRNCAISPDGTVVAFTYK------GDIYTVSVTGGRATQITTNAAYDTTPVW 71 Query: 437 ASDPQWVGF 445 + D +W+ F Sbjct: 72 SPDSKWIAF 80 >gi|327543092|gb|EGF29531.1| TolB protein [Rhodopirellula baltica WH47] Length = 1169 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 107/282 (37%), Gaps = 37/282 (13%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILF--EPRFSPNQQKVAYATYDDEDILRVYLM 242 S K L V+ DG ++R L + +L P +SP+ ++AY + + Sbjct: 882 PSSDPKPVLSVVRIDGTDLRDLAEPNETLLHVGSPDWSPDGTQIAYDQQAGSTLTARLMR 941 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL-TNTL 301 + P + P FS +GKR S + + +D + L ++ Sbjct: 942 VDKTGGDPVDL----GFGSMPTFSPDGKRIAFSAARQG---VGIMDADGSNRTILDSSGW 994 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-----SYFDPVWSP 356 I +SP + + + S LYV N S +K + Q +A Y++ WSP Sbjct: 995 GIQ----WSPIPNLLAYSS----GGSLYVWDLNTSSRKAVLQGPDAIRYSYIYWNMCWSP 1046 Query: 357 QGDLIAF--TKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDG 412 G IA + + I V+ S+ +++ + L W+ ++F Sbjct: 1047 DGKRIALKGRRRDNSQDEIAVVTLSNPSRLQVIRTPAKLGGDLGWASDSLQILFPMLSAE 1106 Query: 413 DTGSKLYSIDLN--GRNETLINTPAY--------ASDPQWVG 444 ++L+ +D+ G + N P+ ++D +W+ Sbjct: 1107 TRRTQLHCVDVTNPGTPKLWPNQPSDRQISGVSLSNDGKWLA 1148 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 336 SDQKRISQDKEASYFDPVW---SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-- 390 + +S K W + + + + S K + V++ DG+ R L E + Sbjct: 850 GGIQLVSIAKGRGTTSAKWLNLTLRARELMVSPSSDPKPVLSVVRIDGTDLRDLAEPNET 909 Query: 391 --NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI---NTPAYASDPQWVGF 445 ++ +P WSP G + + ++ ++L +D G + + + P ++ D + + F Sbjct: 910 LLHVGSPDWSPDGTQIAYDQQAGSTLTARLMRVDKTGGDPVDLGFGSMPTFSPDGKRIAF 969 >gi|301058310|ref|ZP_07199343.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2] gi|300447546|gb|EFK11278.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2] Length = 2881 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 14/219 (6%) Query: 202 NIRYLTPSRDQILFEPRFSPNQQKVAYA-TYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 N + S + + +AY + + L + +R PK+ I Sbjct: 69 NRPVQISFASDPVLYAAISGDGKTLAYVLEREGKSSLWLSPSGSRTGALPKKRLQDLGRI 128 Query: 261 LAPRFSSNGKRALISVQKD---EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 AP S + ++ + D + + ++D + RLT + + + SPD ++ Sbjct: 129 SAPSLSQHAEKMAFAATNDDAKGDIYLLTMDTPESTPWRLTGRDSADGAPALSPDGRRVY 188 Query: 318 FESDREGK--EQLYVMQSNGSDQKRISQD----KEASYFDPVWSPQGDLIAFTKFSGE-K 370 F+ G+ QL VM+ + ++ + + +E ++ P SP GD +AF F+ + Sbjct: 189 FQRLLPGEALPQLSVMEIDSQTDRQDTPEVKVLREGAF--PAVSPGGDRLAFVSFAEDPG 246 Query: 371 FAIGVMKKDGSQER-LLVEDSNLQAPTWSPSGRSLIFSR 408 I V+ + + + + P WS G+S+ FSR Sbjct: 247 GDIHVLDLKTGKAKAVTTGPAQDLYPAWSRDGKSVYFSR 285 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 15/209 (7%) Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA---TERLTNTLFIN 304 P +I +L S +GK ++++ ++ S ++ L Sbjct: 69 NRPVQISFASDPVLYAAISGDGKTLAYVLEREGKSSLWLSPSGSRTGALPKKRLQDLGRI 128 Query: 305 ISASYSPDSSQIVFES---DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 + S S + ++ F + D +G L M + S R++ ++++ P SP G + Sbjct: 129 SAPSLSQHAEKMAFAATNDDAKGDIYLLTMDTPESTPWRLT-GRDSADGAPALSPDGRRV 187 Query: 362 AFTKFSGEKF--AIGVMKKDGSQERLLVEDSNL----QAPTWSPSGRSLIFSRKKDGDTG 415 F + + + VM+ D +R + + P SP G L F + D G Sbjct: 188 YFQRLLPGEALPQLSVMEIDSQTDRQDTPEVKVLREGAFPAVSPGGDRLAFVSFAE-DPG 246 Query: 416 SKLYSIDL-NGRNETLINTPAYASDPQWV 443 ++ +DL G+ + + PA P W Sbjct: 247 GDIHVLDLKTGKAKAVTTGPAQDLYPAWS 275 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 21/231 (9%) Query: 180 VSESVVSGIIKNSLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE---D 235 ++ + + K + ++ D + + RD P SP+ ++V + Sbjct: 140 MAFAATNDDAKGDIYLLTMDTPESTPWRLTGRDSADGAPALSPDGRRVYFQRLLPGEALP 199 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI-SVQKDEAMDIYSVDLQSNAT 294 L V +D++ DR P S G R S +D DI+ +DL++ Sbjct: 200 QLSVMEIDSQTDRQDTPEVKVLREGAFPAVSPGGDRLAFVSFAEDPGGDIHVLDLKTGKA 259 Query: 295 ERLTNTLFINISASYSPDSSQIVFES-----------DREGKEQLYVMQSN--GSDQKRI 341 + +T ++ ++S D + F D K + + G + Sbjct: 260 KAVTTGPAQDLYPAWSRDGKSVYFSRIDADTNKDGAIDFGDKAVICRINPESPGGWAYPL 319 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + ++Y P+ +P I F I + G + Sbjct: 320 TSEAFSAY-QPMTTP--SQILFLSTLNGIGNIWALPLTGQIPTKENASGQM 367 >gi|300785363|ref|YP_003765654.1| beta-lactamase/prolyl oligopeptidase [Amycolatopsis mediterranei U32] gi|299794877|gb|ADJ45252.1| beta-lactamase/prolyl oligopeptidase [Amycolatopsis mediterranei U32] Length = 1107 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 110/338 (32%), Gaps = 67/338 (19%) Query: 160 DDIYQSITGEKGDFNS---RILFVSESVVSGIIK--NSLCVMDRDGANIRYLTPSRDQIL 214 DD+Y E + RI +V + + SL V+ DG R LT Sbjct: 8 DDLYAIEFPEHPAVSPDGRRIAYVLRTADRDRDEDTRSLWVVPADGGEARRLTRG--PAD 65 Query: 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 EP +SP+ ++A+ +D + P+++ P + +G Sbjct: 66 LEPAWSPDGTRLAF--LRAQDGPAQLWLLPTGGGEPEQVTTLPLGAGTPVWRPDGAEIAF 123 Query: 275 S-------------------------------------VQKDEAMDIYSVDLQSNATERL 297 + + + ++ +D+ + ++ Sbjct: 124 AAPVDLAADEGDDDAARTRRASAPVVADRLDFKADGAGLLRTLRKHVHVLDVATGEVRQV 183 Query: 298 TNTLFINISASYSPDSSQIVFESDREGKEQL-------YVMQSNGSDQKRISQDKEASYF 350 T+ + ++SPD +++ F + E L V + + + R+ Sbjct: 184 TSGDWHAGDPAWSPDGARLAFPAGPEADTDLTFRSGAYVVEPGDRASEPRLIGSGAGMCG 243 Query: 351 DPVWSPQG-DLIAFTKFSGEKFAIGV--MKKDGSQERLLVE-------DSNLQAPTWSP- 399 W+ G L+A + +G+ + DG + L P P Sbjct: 244 AVTWTTDGAALLAVGRRDTAPGHLGLLRIPLDGGETTDLAAPLDRNVMPGGAGYPGALPQ 303 Query: 400 -SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAY 436 SG +++F + G T +LY++D G L+ A Sbjct: 304 LSGATVLFCARDRGYT--QLYAVDAEGGEPRLVAGGAG 339 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 45/181 (24%) Query: 307 ASYSPDSSQIVF---ESDREG---KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + SPD +I + +DR+ L+V+ ++G + +R+++ + +P WSP G Sbjct: 19 PAVSPDGRRIAYVLRTADRDRDEDTRSLWVVPADGGEARRLTRGP--ADLEPAWSPDGTR 76 Query: 361 IAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR----------- 408 +AF + + ++ G + E++ P W P G + F+ Sbjct: 77 LAFLRAQDGPAQLWLLPTGGGEPEQVTTLPLGAGTPVWRPDGAEIAFAAPVDLAADEGDD 136 Query: 409 -------------------KKDG-----DTGSKLYSIDL-NGRNETLINTPAYASDPQWV 443 K DG ++ +D+ G + + +A DP W Sbjct: 137 DAARTRRASAPVVADRLDFKADGAGLLRTLRKHVHVLDVATGEVRQVTSGDWHAGDPAWS 196 Query: 444 G 444 Sbjct: 197 P 197 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 30/277 (10%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY------L 241 ++ + V+D +R +T S D +P +SP+ ++A+ + D + + Sbjct: 165 TLRKHVHVLDVATGEVRQVT-SGDWHAGDPAWSPDGARLAFPAGPEADTDLTFRSGAYVV 223 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD---EAMDIYSVDLQSNATERLT 298 P+ IG+ M A ++++G L ++D + + + L T L Sbjct: 224 EPGDRASEPRLIGSGAGMCGAVTWTTDGAALLAVGRRDTAPGHLGLLRIPLDGGETTDLA 283 Query: 299 NTLFINISA--SYSP------DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 L N+ + P + ++F + G QLY + + G + + ++ + Sbjct: 284 APLDRNVMPGGAGYPGALPQLSGATVLFCARDRGYTQLYAVDAEGGEPRLVAGGAGTAVT 343 Query: 351 DPVWSPQGDLIAFTKFSGEKF-AIGVMKKDGSQE-RLLVEDSNLQAPTWS-------PSG 401 + G+ A + + I + G S P S G Sbjct: 344 GMAVA--GETAAIVLATPTSYGQIATVPVGGGAVDVRTAHGSGELEPVVSEEREFTISDG 401 Query: 402 RSLI-FSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 + + + TG + +D++G N A A Sbjct: 402 TVVAGWLLRDPARTGPRPLLLDIHGGPHNAWNGTADA 438 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Query: 393 QAPTWSPSGRSLIFS-----RKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + P SP GR + + R +D DT S L+ + +G + +P W Sbjct: 17 EHPAVSPDGRRIAYVLRTADRDRDEDTRS-LWVVPADGGEARRLTRGPADLEPAWSP 72 >gi|119486195|ref|ZP_01620255.1| WD-40 repeat protein [Lyngbya sp. PCC 8106] gi|119456686|gb|EAW37815.1| WD-40 repeat protein [Lyngbya sp. PCC 8106] Length = 1368 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 19/235 (8%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + FSP+ + +A A+ D+ V L D + K + + + F Sbjct: 746 TLGGHVNWVRAVSFSPDGKLLATASGDN----TVKLWDASTGKEIKTLTGHTNSVNGVSF 801 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREG 324 S +GK + D + ++ D + + LT S+SPD + S G Sbjct: 802 SPDGKLLA-TASGDNTVKLW--DASTGKEIKTLTGHTNWVNGVSFSPDGKLLATAS---G 855 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE- 383 + + + ++ + S +SP G L+A T + + +E Sbjct: 856 DNTVKLWDLSTGKVIKMLTEHTNSVNGVSFSPDGKLLATTSGDNT---VKLWDASTGKEI 912 Query: 384 -RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 L +++ ++SP G+ L + GD KL+ +TL + Sbjct: 913 KTLTGHTNSVNGVSFSPDGKLLATAS---GDNTVKLWDASTGKEIKTLTGHTNWV 964 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 106/320 (33%), Gaps = 46/320 (14%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+++ V +LWD K+I +++TG Sbjct: 931 GKLLATASGDNTV--KLWDASTGKEI------------------------KTLTGHTNWV 964 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 N + + N++ + D + FSP+ + +A A+ D+ Sbjct: 965 NGVSFSPDGKLATASADNTVKLWDASTGKEIKTLTGHTNSVIGVSFSPDGKLLATASGDN 1024 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D + K + + + FS +GK + D + ++ D + Sbjct: 1025 ----TVKLWDASTGKEIKTLTGHTNWVNGVSFSPDGKLLA-TGSGDNTVKLW--DASTGK 1077 Query: 294 TER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + LT S+SPD +D + + ++ + + S Sbjct: 1078 EIKTLTGHTNSVNGVSFSPDGKLATASAD----NTVKLWDASTGKEIKTLTGHTNSVIGV 1133 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +SP G L+A T + + +E L +++ ++SP G+ L + Sbjct: 1134 SFSPDGKLLATTSGDNT---VKLWDASTGKEIKTLTGHTNSVNGVSFSPDGKLLATAS-- 1188 Query: 411 DGDTGSKLYSIDLNGRNETL 430 GD KL+ +TL Sbjct: 1189 -GDKTVKLWDASTGKEIKTL 1207 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 104/327 (31%), Gaps = 45/327 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+++ V +LWD K+I K S + G Sbjct: 763 GKLLATASGDNTV--KLWDASTGKEI--KTLTGHTNS-----------VNGVSFSPDG-- 805 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + + N++ + D + FSP+ + +A A+ D+ Sbjct: 806 --------KLLATASGDNTVKLWDASTGKEIKTLTGHTNWVNGVSFSPDGKLLATASGDN 857 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D + K + + + FS +GK + D + ++ D + Sbjct: 858 ----TVKLWDLSTGKVIKMLTEHTNSVNGVSFSPDGKLLA-TTSGDNTVKLW--DASTGK 910 Query: 294 TER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + LT S+SPD + S G + + ++ + + Sbjct: 911 EIKTLTGHTNSVNGVSFSPDGKLLATAS---GDNTVKLWDASTGKEIKTLTGHTNWVNGV 967 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKK 410 +SP G +A + + +E L +++ ++SP G+ L + Sbjct: 968 SFSPDGK-LATASADNT---VKLWDASTGKEIKTLTGHTNSVIGVSFSPDGKLLATAS-- 1021 Query: 411 DGDTGSKLYSIDLNGRNETLINTPAYA 437 GD KL+ +TL + Sbjct: 1022 -GDNTVKLWDASTGKEIKTLTGHTNWV 1047 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 21/250 (8%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + N++ + D + FSP+ K+A A+ D+ V L D Sbjct: 936 TASGDNTVKLWDASTGKEIKTLTGHTNWVNGVSFSPDG-KLATASADN----TVKLWDAS 990 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFIN 304 + K + + ++ FS +GK + D + ++ D + + LT Sbjct: 991 TGKEIKTLTGHTNSVIGVSFSPDGKLLA-TASGDNTVKLW--DASTGKEIKTLTGHTNWV 1047 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 S+SPD + S G + + ++ + + S +SP G +A Sbjct: 1048 NGVSFSPDGKLLATGS---GDNTVKLWDASTGKEIKTLTGHTNSVNGVSFSPDGK-LATA 1103 Query: 365 KFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSID 422 + + +E L +++ ++SP G+ L + GD KL+ Sbjct: 1104 SADNT---VKLWDASTGKEIKTLTGHTNSVIGVSFSPDGKLLATTS---GDNTVKLWDAS 1157 Query: 423 LNGRNETLIN 432 +TL Sbjct: 1158 TGKEIKTLTG 1167 Score = 96.6 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 114/352 (32%), Gaps = 53/352 (15%) Query: 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 + +G G+++ V +LWD K+I HT + + Sbjct: 1004 SVIGVSFSPDGKLLATASGDNTV--KLWDASTGKEIKTLT-----------GHT--NWVN 1048 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 G + + +G N++ + D + FSP+ Sbjct: 1049 GVSFSPDG----------KLLATGSGDNTVKLWDASTGKEIKTLTGHTNSVNGVSFSPDG 1098 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 K+A A+ D+ V L D + K + + ++ FS +GK + D + Sbjct: 1099 -KLATASADN----TVKLWDASTGKEIKTLTGHTNSVIGVSFSPDGKLLA-TTSGDNTVK 1152 Query: 284 IYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 ++ D + + LT S+SPD + S G + + + ++ + + Sbjct: 1153 LW--DASTGKEIKTLTGHTNSVNGVSFSPDGKLLATAS---GDKTVKLWDASTGKEIKTL 1207 Query: 343 QDKEASYFDPVWSPQ--------GDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNL 392 +SP G +A + + +E L +++ Sbjct: 1208 SGHTHWVNGVSFSPVGASLPSGIGKTLATASGDNT---VKLWDASTGKEIKTLTGHTNSV 1264 Query: 393 QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 ++SP G++L + GD KL++ +TL + + Sbjct: 1265 NGVSFSPDGKTLATAS---GDNTVKLWNASTGKEIKTLTGHTHWVRAVSFSP 1313 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 102/322 (31%), Gaps = 54/322 (16%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+++ G V +LWD K+I +++TG Sbjct: 1056 GKLLATGSGDNTV--KLWDASTGKEI------------------------KTLTGHTNSV 1089 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 N + + N++ + D + FSP+ + +A + D+ Sbjct: 1090 NGVSFSPDGKLATASADNTVKLWDASTGKEIKTLTGHTNSVIGVSFSPDGKLLATTSGDN 1149 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V L D + K + + + FS +GK + D+ + ++ D + Sbjct: 1150 ----TVKLWDASTGKEIKTLTGHTNSVNGVSFSPDGKLLA-TASGDKTVKLW--DASTGK 1202 Query: 294 TER-LTNTLFINISASYSP--------DSSQIVFESDREGKEQLYVMQSNGSDQKRISQD 344 + L+ S+SP + S G + + ++ + + Sbjct: 1203 EIKTLSGHTHWVNGVSFSPVGASLPSGIGKTLATAS---GDNTVKLWDASTGKEIKTLTG 1259 Query: 345 KEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE--RLLVEDSNLQAPTWSPSGR 402 S +SP G +A + + +E L ++A ++SP G+ Sbjct: 1260 HTNSVNGVSFSPDGKTLATASGDNT---VKLWNASTGKEIKTLTGHTHWVRAVSFSPDGK 1316 Query: 403 SLIFSRKKDGDTGSKLYSIDLN 424 D KL+ +D + Sbjct: 1317 ----LATASEDNTVKLWQLDFD 1334 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 15/186 (8%) Query: 250 PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISAS 308 P +G + + A FS +GK + D + ++ D + + LT S Sbjct: 744 PNTLGGHVNWVRAVSFSPDGKLLA-TASGDNTVKLW--DASTGKEIKTLTGHTNSVNGVS 800 Query: 309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG 368 +SPD + S G + + ++ + + +SP G L+A Sbjct: 801 FSPDGKLLATAS---GDNTVKLWDASTGKEIKTLTGHTNWVNGVSFSPDGKLLATASGDN 857 Query: 369 EKFAIGVMKKDGSQE-RLLVEDSN-LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 + + + ++L E +N + ++SP G+ L + GD KL+ Sbjct: 858 T---VKLWDLSTGKVIKMLTEHTNSVNGVSFSPDGKLLATTS---GDNTVKLWDASTGKE 911 Query: 427 NETLIN 432 +TL Sbjct: 912 IKTLTG 917 >gi|91216669|ref|ZP_01253634.1| putative exported tricorn protease [Psychroflexus torquis ATCC 700755] gi|91185138|gb|EAS71516.1| putative exported tricorn protease [Psychroflexus torquis ATCC 700755] Length = 1052 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 25/204 (12%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + R PKR+ + + P FS +G + + D +D++ V +RLT Sbjct: 20 WVANRDGSNPKRLTIDKGIEANPVFSPDGSKIAFEAEYDGNVDVFIVSANGGVPKRLTWH 79 Query: 301 LFINISASYSPDSSQIVFESDREG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + + +S DS ++F S R Q++ + ++G I+Q + F +S Sbjct: 80 PYNDYVRDFSADSKTVLFVSQRNSFTNRYMQVFSVSTDGGA---ITQLDIPNAFWASYSD 136 Query: 357 QGDLIAFT-----------KFSGEKFAIGVMKKDG---SQERLLVEDSNLQAPTWSPSGR 402 IA+T G I + S+ + SN P W G Sbjct: 137 NDQSIAYTPIADRFNQWKHYRGGTVARIWLYNTQSHKVSEIQKPEGGSNDSQPQW--MGE 194 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGR 426 + F +DG+ LYS + N + Sbjct: 195 FVYFKSDRDGEF--NLYSYETNSK 216 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 23/213 (10%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L V +RDG+N + LT + I P FSP+ K+A+ D ++ + + PK Sbjct: 18 DLWVANRDGSNPKRLTIDK-GIEANPVFSPDGSKIAFEAEYDGNVD--VFIVSANGGVPK 74 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY----SVDLQSNATERLTNTLFINISA 307 R+ FS++ K L Q++ + Y SV A +L + A Sbjct: 75 RLTWHPYNDYVRDFSADSKTVLFVSQRNSFTNRYMQVFSVSTDGGAITQL--DIPNAFWA 132 Query: 308 SYSPDSSQIVFE--SDR---------EGKEQLYVMQSNGSDQKRIS-QDKEASYFDPVWS 355 SYS + I + +DR ++++ + I + ++ P W Sbjct: 133 SYSDNDQSIAYTPIADRFNQWKHYRGGTVARIWLYNTQSHKVSEIQKPEGGSNDSQPQWM 192 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 G+ + F +F + + + + L + Sbjct: 193 --GEFVYFKSDRDGEFNLYSYETNSKAIKKLTD 223 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 19/228 (8%) Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 Y T + D + + T + +R + + + S +G RA++ D Sbjct: 245 GTLHIYNTKTNTDNVLNISITTDLLELRERFVSGEDYVRSVGVSPSGARAVV----DFRG 300 Query: 283 DIYSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI +V Q + +T T +SPD I + SD G+ L++ + D I Sbjct: 301 DIVTVPGQKGDPKNMTATTGTHEKYPEWSPDGKFIAYFSDATGEYALHIKNNVLGDVSAI 360 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-------SNLQA 394 Y D WSP +++ + V + + ED Sbjct: 361 PLTGSGFYADIHWSPDSKNVSYV---DNGRRLYVTDISTKKTTKIDEDILFVPGIFRELF 417 Query: 395 PTWSPSGRSLIFS--RKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 +WS + ++ + + + YSI + ++ L + + S+P Sbjct: 418 GSWSHDSNWIAYTVITETNFERAYA-YSISED-KSYPLSDGLSNVSEP 463 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 104/316 (32%), Gaps = 38/316 (12%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 R H +D + K +LFVS+ + + DG I L Sbjct: 75 RLTWHPYNDYVRDFSADSK-----TVLFVSQRNSFTNRYMQVFSVSTDGGAITQLDIPN- 128 Query: 212 QILFEPRFSPNQQKVAYA----------TYDDEDILRVYLMDTRIDRAPK-RIGNFRSMI 260 F +S N Q +AY Y + R++L +T+ + + + S Sbjct: 129 --AFWASYSDNDQSIAYTPIADRFNQWKHYRGGTVARIWLYNTQSHKVSEIQKPEGGSND 186 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFES 320 P++ G+ +D ++YS + S A ++LT+ + + Sbjct: 187 SQPQWM--GEFVYFKSDRDGEFNLYSYETNSKAIKKLTDYK---DFPVINLKAHNGAVIY 241 Query: 321 DREGKEQLYVMQSNGSDQKRIS------------QDKEASYFDPVWSPQGDLIAFTKFSG 368 ++ G +Y ++N + IS E SP G A F G Sbjct: 242 EQAGTLHIYNTKTNTDNVLNISITTDLLELRERFVSGEDYVRSVGVSPSGAR-AVVDFRG 300 Query: 369 EKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + + K D ++ + P WSP G+ + + G+ + + L + Sbjct: 301 DIVTVPGQKGDPKNMTATT-GTHEKYPEWSPDGKFIAYFSDATGEYALHIKNNVLGDVSA 359 Query: 429 TLINTPAYASDPQWVG 444 + + +D W Sbjct: 360 IPLTGSGFYADIHWSP 375 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 75/217 (34%), Gaps = 12/217 (5%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 ++ + + S + S + + + + + + +T + P +S Sbjct: 270 ELRERFVSGEDYVRSVGVSPSGARAVVDFRGDIVTVPGQKGDPKNMTATTGTHEKYPEWS 329 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 P+ + +AY + D +++ + + +S + K D Sbjct: 330 PDGKFIAYFS-DATGEYALHIKNNVLGDVSAIPLTGSGFYADIHWSPDSKNVSYV---DN 385 Query: 281 AMDIYSVDLQSNATERL------TNTLFINISASYSPDSSQIVFESDREGK-EQLYVMQS 333 +Y D+ + T ++ +F + S+S DS+ I + E E+ Y Sbjct: 386 GRRLYVTDISTKKTTKIDEDILFVPGIFRELFGSWSHDSNWIAYTVITETNFERAYAYSI 445 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 + +S D ++ +PV+ P G + T + Sbjct: 446 SEDKSYPLS-DGLSNVSEPVFDPSGKYLYMTASTDAG 481 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +S + +AY + + R Y D++ + + S + P F +GK ++ Sbjct: 419 SWSHDSNWIAYTVITETNFERAYAYSISEDKSY-PLSDGLSNVSEPVFDPSGKYLYMTAS 477 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINI 305 D + D QSN + LT ++++ Sbjct: 478 TDAGPLVNWFD-QSNIDKELTQSIYLVT 504 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 46/141 (32%), Gaps = 4/141 (2%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM--ILAPRFSSNGKRALISV 276 +SP+ + V+Y + + + + + I + L +S + +V Sbjct: 373 WSPDSKNVSYVDNG-RRLYVTDISTKKTTKIDEDILFVPGIFRELFGSWSHDSNWIAYTV 431 Query: 277 QKDEAMD-IYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + + Y+ + + + L++ L + P + + + + + Sbjct: 432 ITETNFERAYAYSISEDKSYPLSDGLSNVSEPVFDPSGKYLYMTASTDAGPLVNWFDQSN 491 Query: 336 SDQKRISQDKEASYFDPVWSP 356 D++ + V SP Sbjct: 492 IDKELTQSIYLVTLQKEVISP 512 >gi|332711762|ref|ZP_08431693.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L] gi|332349740|gb|EGJ29349.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L] Length = 1142 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 65/363 (17%), Positives = 139/363 (38%), Gaps = 42/363 (11%) Query: 88 KQKITNPDSIPRFQDWNSLGAQ-VLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFS 146 Q++ + W++ G Q L+TG + + F L D +++ + Sbjct: 711 GQRLATGSDDKTARIWDNQGNQIALLTGHQFRVNS----IAFSL----DGQRLATGSRDN 762 Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE--SVVSGIIKNSLCVMDRDGANIR 204 + W + I+ + + + + F + ++ + ++ + D G + Sbjct: 763 TARIWDNQGNQIA------VLKGHQFWVNSVAFSPDGKTLATASFNKTVIIWDLQGHELT 816 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 +T +D++ FSP+ Q++A A+ D R++ + +S + + Sbjct: 817 VVTAHQDKVNSV-AFSPDGQRLATASSD--KTARIWDNQ---GNQIAVLTGHQSRVWSVA 870 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 FS +G+R + +D I+ D Q N LT S ++SPD + SD Sbjct: 871 FSPDGQRLA-TASRDNTARIW--DNQGNQIAVLTGPQNSLNSVAFSPDGKTLATASD--- 924 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER 384 + + N +Q + + +SP G +A G + G+Q Sbjct: 925 -DNTATIWDNQGNQLAVLTGHQNWLTSVAFSPDGQRLATASVDGTA---RIWDNQGNQIA 980 Query: 385 LLV-EDSNLQAPTWSPSGRSLIFSRKKD-----GDTGSKLYSIDLNGRNETLINTPAYAS 438 +L S + + +SP G+ L + + + G+++ L G + L++ A++ Sbjct: 981 VLKGHQSRVNSVAFSPDGQRLATASVDNTARIWDNQGNQIAL--LTGHQKRLLS-AAFSP 1037 Query: 439 DPQ 441 D Q Sbjct: 1038 DGQ 1040 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 20/240 (8%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + + + + D G N + ++ FSP+ QK+A A+ D R++ Sbjct: 548 QRLATASDDKTARIWDNQG-NQIAVITGHQDSVWSIAFSPDGQKLATASRD--KTARIWD 604 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + ++ + FS +G+R + D+ I+ DLQ N LT Sbjct: 605 NQ---GHEISVLRGHQDVVWSVAFSPDGQRLA-TASDDKTARIW--DLQGNQIALLTGHQ 658 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S ++SPD ++ SD + +++ N +Q + + S + +SP G + Sbjct: 659 SRVNSVAFSPDGQKLATVSD-DKTARIW---DNQGNQIAVLTGHQDSVWSVAFSPDGQRL 714 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 A T + I G+Q LL + + +S G+ L + D ++++ Sbjct: 715 A-TGSDDKTARIW--DNQGNQIALLTGHQFRVNSIAFSLDGQRLATGSR---DNTARIWD 768 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 86/229 (37%), Gaps = 21/229 (9%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + ++ FSP+ Q++A A+ D R++ I + + + F Sbjct: 530 VLTGHQDSVWSVAFSPDGQRLATASDD--KTARIWDNQ---GNQIAVITGHQDSVWSIAF 584 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ + +D+ I+ D Q + L + S ++SPD ++ SD Sbjct: 585 SPDGQKLA-TASRDKTARIW--DNQGHEISVLRGHQDVVWSVAFSPDGQRLATASD---D 638 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 + + G+ ++ ++ +SP G +A + G+Q + Sbjct: 639 KTARIWDLQGNQIALLT-GHQSRVNSVAFSPDGQKLATVSDDKTA---RIWDNQGNQIAV 694 Query: 386 LV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT 433 L ++ + +SP G+ L D ++++ D G L+ Sbjct: 695 LTGHQDSVWSVAFSPDGQRLATGSD---DKTARIW--DNQGNQIALLTG 738 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 104/297 (35%), Gaps = 24/297 (8%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 D +++ + W + I+ F+ + + + N+ Sbjct: 833 DGQRLATASSDKTARIWDNQGNQIAVLTGHQSRVWSVAFSPD----GQRLATASRDNTAR 888 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + D G N + L FSP+ + +A A+ D+ + D + ++ + Sbjct: 889 IWDNQG-NQIAVLTGPQNSLNSVAFSPDGKTLATASDDN----TATIWDNQGNQLA-VLT 942 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 ++ + + FS +G+R + D I+ D Q N L S ++SPD Sbjct: 943 GHQNWLTSVAFSPDGQRLA-TASVDGTARIW--DNQGNQIAVLKGHQSRVNSVAFSPDGQ 999 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 ++ + + +++ N +Q + + +SP G +A F Sbjct: 1000 RLA-TASVDNTARIW---DNQGNQIALLTGHQKRLLSAAFSPDGQKLATGSFDNTA---R 1052 Query: 375 VMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + G+ +L + + +SP G+ L + D ++++ ++ G Sbjct: 1053 IWDNQGNPLAVLTGHQDWVSSVAFSPDGQRLATASD---DKTARIWKVESLGELLRR 1106 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 19/215 (8%) Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 Y + R + + + + FS +G+R + D+ I+ D Sbjct: 508 HYPATSPIYALQQSISKFRKGAVLTGHQDSVWSVAFSPDGQRLA-TASDDKTARIW--DN 564 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 Q N +T S ++SPD ++ + R+ +++ N + + + + Sbjct: 565 QGNQIAVITGHQDSVWSIAFSPDGQKLA-TASRDKTARIW---DNQGHEISVLRGHQDVV 620 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSR 408 + +SP G +A + G+Q LL S + + +SP G+ L Sbjct: 621 WSVAFSPDGQRLATASDDKTA---RIWDLQGNQIALLTGHQSRVNSVAFSPDGQKLATVS 677 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 D ++++ D G ++ D W Sbjct: 678 D---DKTARIW--DNQGNQIAVLT---GHQDSVWS 704 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 107/294 (36%), Gaps = 46/294 (15%) Query: 80 NLISQDSFKQKITNPDSIPRFQDWNSLGAQ-VLVTG------RVIKEGKDRLRVEF---- 128 N ++ Q++ S + W++ G Q ++TG V + Sbjct: 826 NSVAFSPDGQRLATASSDKTARIWDNQGNQIAVLTGHQSRVWSVAFSPDGQRLATASRDN 885 Query: 129 --RLWDVKDRKQIIGKKFFSSPASWRKIAH--------TISDDIYQSITGEKGD------ 172 R+WD QI S +A T SDD +I +G+ Sbjct: 886 TARIWD-NQGNQIA--VLTGPQNSLNSVAFSPDGKTLATASDDNTATIWDNQGNQLAVLT 942 Query: 173 ----FNSRILFVS--ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 + + + F + + + + + + D G N + + FSP+ Q++ Sbjct: 943 GHQNWLTSVAFSPDGQRLATASVDGTARIWDNQG-NQIAVLKGHQSRVNSVAFSPDGQRL 1001 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 A A+ D + R++ + + +L+ FS +G++ + D I+ Sbjct: 1002 ATASVD--NTARIWDNQ---GNQIALLTGHQKRLLSAAFSPDGQKLA-TGSFDNTARIW- 1054 Query: 287 VDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 D Q N LT S ++SPD ++ SD + +++ ++S G +R Sbjct: 1055 -DNQGNPLAVLTGHQDWVSSVAFSPDGQRLATASD-DKTARIWKVESLGELLRR 1106 >gi|311746912|ref|ZP_07720697.1| MdsD protein [Algoriphagus sp. PR1] gi|126578602|gb|EAZ82766.1| MdsD protein [Algoriphagus sp. PR1] Length = 1077 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 129/336 (38%), Gaps = 40/336 (11%) Query: 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 + L+D ++ + ++ + +IY ++ G FN ++ Sbjct: 201 DIWLYDAEEGSHSMLTDYYGEDRNPVFSPDE--SEIY-YLSEANGSFN------VFAMPL 251 Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 K SL + +R+LT S+D ++ F + + + L V + + Sbjct: 252 NNPKQSLALTSLTDFPVRFLTISQDGLM---SFGYDGELYTLRKGESPKKLEVRIKTQAV 308 Query: 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + I + S NGK + + +++ + + T+R+TNT Sbjct: 309 SNSDSYIA-INGGVREMVISPNGKEIALIARG----EVFVTSVDGSMTKRITNTPEQERF 363 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSD----------QKRISQDKEASYFDPVWSP 356 +SPD +V+ S+R+GK +Y S+ ++++ KE ++P +SP Sbjct: 364 LDFSPDGKSLVYSSERDGKWSIYSSSKIRSEEPYFFASTLIEEKVLVSKEVDVYEPDYSP 423 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-------SNLQAPTWSPSGRSLIFSRK 409 G +A+ + ++ + VM + + L+ Q TWSP + L+ + Sbjct: 424 DGKKLAYVE---DRRTLKVMDLESQESVTLMTPDELFHMRDGDQYFTWSPDSKWLL-ATY 479 Query: 410 KDGDTGSKLYSIDLNGR--NETLINTPAYASDPQWV 443 S++ +D G+ + L + S P WV Sbjct: 480 NPTMVNSEVVLLDATGKEPKKNLTKSGYGDSQPVWV 515 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 82/250 (32%), Gaps = 35/250 (14%) Query: 208 PSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSS 267 S + + P SP+ +A+ D + + K++ + P +S Sbjct: 23 QSPPKWMRYPAISPDGSLIAFTFKGD------LFLVSSTGGDAKQLTFHEAHDYKPVWSK 76 Query: 268 NGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR----- 322 +G++ + + D++ + Q RLT +S D+ ++F + R Sbjct: 77 DGEQLAFASDRYGNFDVFIMSAQGGPATRLTFHSNDEQPFDFSADNQNVIFGATRMDIAE 136 Query: 323 ------EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK------ 370 + +LY + +I S G + + G + Sbjct: 137 HRQYPTGSQPELYQVPKKSGRVDQIWTIPAEYVQT---SQDGTKMIYHDKKGGENEWRKH 193 Query: 371 ------FAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL 423 I + + +L + + P +SP + + + +G ++++ L Sbjct: 194 HESGIARDIWLYDAEEGSHSMLTDYYGEDRNPVFSPDESEIYYLSEANGSF--NVFAMPL 251 Query: 424 NGRNETLINT 433 N ++L T Sbjct: 252 NNPKQSLALT 261 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 30/205 (14%) Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR 322 P S +G + + D ++ V ++LT + +S D Q+ F SDR Sbjct: 32 PAISPDGSLIAFTFKGD----LFLVSSTGGDAKQLTFHEAHDYKPVWSKDGEQLAFASDR 87 Query: 323 EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS-----------GEKF 371 G +++M + G R++ +S + F G + Sbjct: 88 YGNFDVFIMSAQGGPATRLTFHSN-DEQPFDFSADNQNVIFGATRMDIAEHRQYPTGSQP 146 Query: 372 AIG-VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDT----------GSKLYS 420 + V KK G +++ + S G +I+ KK G+ ++ Sbjct: 147 ELYQVPKKSGRVDQIWTIPAEYVQT--SQDGTKMIYHDKKGGENEWRKHHESGIARDIWL 204 Query: 421 IDL-NGRNETLINTPAYASDPQWVG 444 D G + L + +P + Sbjct: 205 YDAEEGSHSMLTDYYGEDRNPVFSP 229 Score = 87.4 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 28/213 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 SPN +++A + + + KRI N FS +GK + S ++ Sbjct: 326 ISPNGKEIALIARGE------VFVTSVDGSMTKRITNTPEQERFLDFSPDGKSLVYSSER 379 Query: 279 DEAMDIYSVD----------LQSNATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQ 327 D IYS + E++ + +++ YSPD ++ + DR Sbjct: 380 DGKWSIYSSSKIRSEEPYFFASTLIEEKVLVSKEVDVYEPDYSPDGKKLAYVEDR---RT 436 Query: 328 LYVMQSNGSDQKRISQDKE-----ASYFDPVWSPQGDLIAFTKFSGE-KFAIGVMKKDGS 381 L VM + + E WSP + T + ++ G Sbjct: 437 LKVMDLESQESVTLMTPDELFHMRDGDQYFTWSPDSKWLLATYNPTMVNSEVVLLDATGK 496 Query: 382 QER--LLVEDSNLQAPTWSPSGRSLIFSRKKDG 412 + + L P W G+ +++ +DG Sbjct: 497 EPKKNLTKSGYGDSQPVWVNEGKQMLWFSNRDG 529 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 91/242 (37%), Gaps = 36/242 (14%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 K L ++ G + + LT + ++P +S + +++A+A+ + V++M + Sbjct: 44 TFKGDLFLVSSTGGDAKQLT-FHEAHDYKPVWSKDGEQLAFASDRYGN-FDVFIMSAQGG 101 Query: 248 RAPKRIGNFRSMILAP-RFSSNGKRALISVQK-----------DEAMDIYSVDLQSNATE 295 A + F S P FS++ + + + ++Y V +S + Sbjct: 102 PATRL--TFHSNDEQPFDFSADNQNVIFGATRMDIAEHRQYPTGSQPELYQVPKKSGRVD 159 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQ------------LYVMQSNGSDQKRISQ 343 ++ + S D +++++ + G+ + +++ + ++ Sbjct: 160 QIWTIPAEYVQT--SQDGTKMIYHDKKGGENEWRKHHESGIARDIWLYDAEEGSHSMLT- 216 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP----TWSP 399 D +PV+SP I + + F + M + + ++ L S P T S Sbjct: 217 DYYGEDRNPVFSPDESEIYYLSEANGSFNVFAMPLN-NPKQSLALTSLTDFPVRFLTISQ 275 Query: 400 SG 401 G Sbjct: 276 DG 277 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 61/144 (42%), Gaps = 3/144 (2%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 + S++ ++EP +SP+ +K+AY ++ + ++ P + + R Sbjct: 408 VLVSKEVDVYEPDYSPDGKKLAYVEDRRTLKVMDLESQESVTLMTPDELFHMRDGDQYFT 467 Query: 265 FSSNGKRALISVQKDE-AMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDR 322 +S + K L + ++ +D ++ LT + + + + + Q+++ S+R Sbjct: 468 WSPDSKWLLATYNPTMVNSEVVLLDATGKEPKKNLTKSGYGDSQPVWVNEGKQMLWFSNR 527 Query: 323 EGKEQLYVMQSNGSDQKRISQDKE 346 +G + +D + DKE Sbjct: 528 DGMRSYATSGRSQNDVYSLFFDKE 551 >gi|297809975|ref|XP_002872871.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp. lyrata] gi|297318708|gb|EFH49130.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp. lyrata] Length = 652 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 84/255 (32%), Gaps = 51/255 (20%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD-EDILRVYLMDTRIDRAPK 251 + V DG+ + T +D+ F +SP ++ V Y + + + RI P Sbjct: 366 IKVAKSDGS--KRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFRPAGIAVQIARIKFDPS 423 Query: 252 RIGNFR---------------SMILAPRFSSNGKRALISVQKDEAMDIYSVDL-----QS 291 + + P S +GK + + ++Y VD Sbjct: 424 DLTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNG 483 Query: 292 NATERLTNTLFINISASYSPDSSQIVFESDREGKEQL-----YVMQSNGSDQKRISQDKE 346 RLT +I+ +SP I F S+R + YV++ +GS +RI Sbjct: 484 GGIRRLTEGPWIDTMPCWSPKGDLIGFSSNRHNPANIDAFGAYVVRPDGSGLRRILISGP 543 Query: 347 AS--------YFDPVWSPQGDLIAFTKF----------SGEKFA----IGVMKKDGSQER 384 ++ GD + FT +F + V+K DG+ R Sbjct: 544 EGSEEAARERVNHVSFNKDGDWLVFTANLCGITAEPVAMPNQFQPYGDLYVVKLDGTGLR 603 Query: 385 LLV-EDSNLQAPTWS 398 L PTW Sbjct: 604 RLTWNGYEDGTPTWH 618 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 101/324 (31%), Gaps = 55/324 (16%) Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQI--LFEPRFSPNQQKVAYA 229 F+ + G+ + + D D + +T + + P S N + + Y Sbjct: 250 AFHDGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPFVSSNSEFLGYH 309 Query: 230 TYDDE--DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 + E + I K + R P S NG ++ D I Sbjct: 310 RFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDINGGIKVA 369 Query: 288 DLQSNATERLT----NTLFINISASYSPDSSQIVFES------DREGKEQLYVMQSNGSD 337 + +R T T F N S+SP +++ S Q+ ++ + SD Sbjct: 370 KSDGS--KRWTLIKDRTAFYN---SWSPTERHVIYTSLGPIFRPAGIAVQIARIKFDPSD 424 Query: 338 QKR-----------ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKK-----DGS 381 ++ + + P SP G I F + ++ +G Sbjct: 425 LTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNGG 484 Query: 382 QERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGD-----TGSKLYSIDLNGRNETLINTP- 434 R L E + P WSP G + FS + G+ + D +G LI+ P Sbjct: 485 GIRRLTEGPWIDTMPCWSPKGDLIGFSSNRHNPANIDAFGAYVVRPDGSGLRRILISGPE 544 Query: 435 -------------AYASDPQWVGF 445 ++ D W+ F Sbjct: 545 GSEEAARERVNHVSFNKDGDWLVF 568 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 95/263 (36%), Gaps = 36/263 (13%) Query: 214 LFEPRFSPNQQKVAYATYDDE---DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 F P + +++A AT + +Y +D + + N P SSN + Sbjct: 245 CFTPAAFHDGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPFVSSNSE 304 Query: 271 RALISVQKDEAMDIYSV--DLQS--NATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + E+ S+ +++S + + L S SP+ I SD + Sbjct: 305 FLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDING 364 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF------SGEKFAIGVMKKDG 380 + V +S+GS KR + K+ + F WSP + +T +G I +K D Sbjct: 365 GIKVAKSDGS--KRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFRPAGIAVQIARIKFDP 422 Query: 381 SQ-----------ERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL---- 423 S ++L N P+ SP G+S++F + G LY +D Sbjct: 423 SDLTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHK--NLYIVDAVNGE 480 Query: 424 --NGRNETLINTPAYASDPQWVG 444 G L P + P W Sbjct: 481 SNGGGIRRLTEGPWIDTMPCWSP 503 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 17/209 (8%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRID--------RAPKRIGNFRSMILAPRFSS 267 P +S + V + D+ ++ +D + P R+ P Sbjct: 194 WPTWSGD-STVFFHHQADDGWWSIFRVDIPENFKKYSDFPITPIRVTPSGLHCFTPAAFH 252 Query: 268 NGKRALISVQKDE--AMDIYSVDLQSNATERLT---NTLFINISASYSPDSSQIVFESDR 322 +GKR ++ ++ I DL + +T N F + + S +S + + R Sbjct: 253 DGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPFVSSNSEFLGYHRFR 312 Query: 323 EGKEQL-YVMQSNGSDQKRISQDK--EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 Q ++ + S I + + P SP GDLIA I V K D Sbjct: 313 GESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDINGGIKVAKSD 372 Query: 380 GSQERLLVEDSNLQAPTWSPSGRSLIFSR 408 GS+ L++D +WSP+ R +I++ Sbjct: 373 GSKRWTLIKDRTAFYNSWSPTERHVIYTS 401 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 18/196 (9%) Query: 267 SNGKRALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPD-SSQIVFESDREG 324 G +V + D++S+ + + RLT+ + +N +A + D S +VF S+R G Sbjct: 4 PKGTIIFTTVGRTHYGFDVFSLHIATAVERRLTDGVSVNFNAQFVNDKSDDVVFVSERNG 63 Query: 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK---FSGEKFA----IGVMK 377 ++Y + S+ +++ E+ + D Q + + F F + ++ Sbjct: 64 SARIYKTRPGISEPEQLPGAPESYFHDRPIITQSNRLYFISAHEQPDRHFKNWSALYTVE 123 Query: 378 KDGSQE---RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN------GRNE 428 +G + R+ D+ +P S SG L + G + + I+ + E Sbjct: 124 LNGEEREVTRVTPLDTADFSPAVSQSGDFLAVASYGSRSWGGEFHEINTDITVFKASEPE 183 Query: 429 TLINTPAYASDPQWVG 444 T + P W G Sbjct: 184 TRVVICERGGWPTWSG 199 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 86/300 (28%), Gaps = 30/300 (10%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + +V + + A R LT + F +F ++ + Sbjct: 3 TPKGTIIFTTVGRTHYGFDVFSLHIATAVERRLTDGVS-VNFNAQFVNDKSDDVVFVSER 61 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-------AMDIYS 286 R+Y I + G S + R ++ +Y+ Sbjct: 62 NGSARIYKTRPGISEPEQLPGAPESYFHDRPIITQSNRLYFISAHEQPDRHFKNWSALYT 121 Query: 287 VDLQS--NATERLTNTLFINISASYSPDSSQIVFES--DREGKEQLYVMQSN------GS 336 V+L R+T + S + S + S R + + + ++ Sbjct: 122 VELNGEEREVTRVTPLDTADFSPAVSQSGDFLAVASYGSRSWGGEFHEINTDITVFKASE 181 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG----------SQERLL 386 + R+ + + P WS + + ++I + + R+ Sbjct: 182 PETRVVICERGGW--PTWSGDSTVFFHHQADDGWWSIFRVDIPENFKKYSDFPITPIRVT 239 Query: 387 VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 + P G+ + + ++ G + DL+ + + P S + F+ Sbjct: 240 PSGLHCFTPAAFHDGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPFV 299 >gi|114048456|ref|YP_739006.1| transcriptional regulator domain-containing protein [Shewanella sp. MR-7] gi|113889898|gb|ABI43949.1| transcriptional regulator domain protein [Shewanella sp. MR-7] Length = 716 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 104/277 (37%), Gaps = 55/277 (19%) Query: 219 FSPNQQKVAYAT-YDDEDILRVYLMDT-RIDRAPKRIG-----NFRSMILAPRFSSNGKR 271 S + Q +AY + ++ + +Y + + D +R+ N+ LA FS +G+ Sbjct: 286 ISADGQYLAYVSSHEAGKVGGIYRLSLVQPDAKAERLSCEAHCNYEDRDLA--FSPDGRW 343 Query: 272 ALISVQKDE-AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYV 330 I+ + + DI+ DL S + +RLT+ L S++PD+ +VF ++ G ++ Sbjct: 344 LAIARRFSNISEDIFIRDLASASEKRLTHGLEDIRGLSWTPDAQSLVFATEDSGSRNGFI 403 Query: 331 MQSNGSDQKRISQDK-------------------------------------------EA 347 + + + + + Sbjct: 404 IDIETTHIRSLDVEGMSYPSSVSEEGELVYHQYRRQFQMAYFSLGESVPGSLFPLLYSSI 463 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIF 406 S+ +P +SP+ I F I +G + S + P WSP G + F Sbjct: 464 SHRNPDYSPEAKRIVFVSSETGYNEIWTSDINGKKLEQHTHLKSRVAYPRWSPDGAKIAF 523 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINTPAYA-SDPQW 442 D + G++++ +DL +N T + + + P W Sbjct: 524 IAPDDRNEGNRIFILDLASKNITALASSYHNHGRPSW 560 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 106/311 (34%), Gaps = 32/311 (10%) Query: 145 FSSPASWRKIAHTISD---DIY-------------QSITGEKGDFNSRILFVSESVVSGI 188 FS W IA S+ DI+ + +G + Sbjct: 337 FSPDGRWLAIARRFSNISEDIFIRDLASASEKRLTHGLEDIRGLSWTPDAQSLVFATEDS 396 Query: 189 IKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 + ++D + +IR L + + + S ++ Y Y + + + + + Sbjct: 397 GSRNGFIIDIETTHIRSL--DVEGMSYPSSVSEEG-ELVYHQYRRQFQMAYFSLGESVPG 453 Query: 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS 308 + + P +S KR + + +I++ D+ E+ T+ Sbjct: 454 SLFPLLYSSISHRNPDYSPEAKRIVFVSSETGYNEIWTSDINGKKLEQHTHLKSRVAYPR 513 Query: 309 YSPDSSQIVFES--DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 +SPD ++I F + DR +++++ + ++ ++ P W+ QG + + Sbjct: 514 WSPDGAKIAFIAPDDRNEGNRIFILDLASKNITALAS-SYHNHGRPSWNWQGTAVLASTT 572 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGR 426 G I D S R++ A ++ S +FSR + L+ IDL Sbjct: 573 DG----ITEFYLDNSTPRVI--SPLTMAVGFAKSANEFVFSRY----GVNGLWQIDLTQP 622 Query: 427 NETLINTPAYA 437 + P Sbjct: 623 EQVQEIIPGKV 633 >gi|242801985|ref|XP_002483884.1| WD-repeat protein, putative [Talaromyces stipitatus ATCC 10500] gi|218717229|gb|EED16650.1| WD-repeat protein, putative [Talaromyces stipitatus ATCC 10500] Length = 1596 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 93/264 (35%), Gaps = 19/264 (7%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V SG + ++ + D +R + FSP + VA + D V L D Sbjct: 974 VASGSVDYTIKLWDLATGTLRQTLEGHSSSVRAVAFSPKGKLVASGSDDK----TVKLWD 1029 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLF 302 + + + A FS +GK S D+ + ++ DL + + L + Sbjct: 1030 LATGTLRQTLEGHSGSVFAVAFSPDGKLVA-SGSDDKTVKLW--DLATGTLRQTLEDHSG 1086 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIA 362 + ++SPD S + + + +++ +D S F +SP G L+A Sbjct: 1087 PVQTVAFSPDGKLTASGSY---DKTVKLWDLATGTLRQMLEDHSGSVFAVAFSPNGKLVA 1143 Query: 363 FTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYS 420 I + R ++ S +QA +SP+G+ + D KL+ Sbjct: 1144 SGSVDCT---IKLWDSATGTLRQTLKGYSSLVQAVAFSPNGKLVA---SGSVDYTIKLWD 1197 Query: 421 IDLNGRNETLINTPAYASDPQWVG 444 + +TL + + Sbjct: 1198 LATGTLRQTLEGHSSSVRAVAFSP 1221 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 16/206 (7%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 ++ +F FSP+ + VA + D + L D + + S + A Sbjct: 951 VQQTLEGHSGSVFAVAFSPDGKLVASGSVD----YTIKLWDLATGTLRQTLEGHSSSVRA 1006 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESD 321 FS GK S D+ + ++ DL + + L + ++SPD + SD Sbjct: 1007 VAFSPKGKLVA-SGSDDKTVKLW--DLATGTLRQTLEGHSGSVFAVAFSPDGKLVASGSD 1063 Query: 322 REGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGS 381 + + + ++ +D +SP G L A + + + Sbjct: 1064 ---DKTVKLWDLATGTLRQTLEDHSGPVQTVAFSPDGKLTASGSYDKT---VKLWDLATG 1117 Query: 382 QERLLVED--SNLQAPTWSPSGRSLI 405 R ++ED ++ A +SP+G+ + Sbjct: 1118 TLRQMLEDHSGSVFAVAFSPNGKLVA 1143 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 95/314 (30%), Gaps = 42/314 (13%) Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + +LWD + R+ S + G Sbjct: 1143 ASGSVDCTIKLWDSATG-------------TLRQTLKGYSSLVQAVAFSPNG-------- 1181 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + V SG + ++ + D +R + FSP+ + VA + D + Sbjct: 1182 --KLVASGSVDYTIKLWDLATGTLRQTLEGHSSSVRAVAFSPDGKLVASGSVD----YTI 1235 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LT 298 L D + + +LA FS +GK S D+ + ++ D + + L Sbjct: 1236 KLWDPATGTLRQTLEGHSGPVLAVAFSPDGK-LTASGSYDKTVKLW--DPATGTLRQALE 1292 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + + ++SPD S + + + ++ + +SP Sbjct: 1293 DHSGPVQTVAFSPDGKLTASGSY---DKTVKLWDPATGTLRQTLEGHSDLIQTVAFSPNS 1349 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL--QAPTWSPSGRSLIFSRKKDGDTGS 416 L+A + + + R E + + +SP G+ D Sbjct: 1350 KLVASGSYDKT---VKLWDLATGTLRQTFEGHSDLVRVVAFSPDGKLTASGSY---DKTV 1403 Query: 417 KLYSIDLNGRNETL 430 KL+ + +TL Sbjct: 1404 KLWDLATGTLRQTL 1417 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 84/258 (32%), Gaps = 20/258 (7%) Query: 164 QSITGEKGDFNSRILFVSES-VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 Q++ G + SG ++ + D +R ++ FSPN Sbjct: 1289 QALEDHSGPVQTVAFSPDGKLTASGSYDKTVKLWDPATGTLRQTLEGHSDLIQTVAFSPN 1348 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + VA +YD V L D + ++ FS +GK S D+ + Sbjct: 1349 SKLVASGSYDK----TVKLWDLATGTLRQTFEGHSDLVRVVAFSPDGK-LTASGSYDKTV 1403 Query: 283 DIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++ DL + + L + +SP + S + + + ++ Sbjct: 1404 KLW--DLATGTLRQTLEGHSSSVRAVVFSPKGKLVASGSY---DKTVKLWDPATGTLRQT 1458 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSP 399 + V+SP G L+ + + + R +ED ++ +SP Sbjct: 1459 LEGHSGPVQTVVFSPNGKLLVSGSYDKT---VKLWDLSTGTLRQTLEDHSGLVRVVAFSP 1515 Query: 400 SGRSLIFSRKKDGDTGSK 417 G+ F G ++ Sbjct: 1516 DGK---FLETNQGRLNTE 1530 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 104/314 (33%), Gaps = 42/314 (13%) Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 + +LWD+ + + +S R +A S D Sbjct: 1185 ASGSVDYTIKLWDLATGT--LRQTLEGHSSSVRAVA--FSPD------------------ 1222 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 + V SG + ++ + D +R + FSP+ + A +YD V Sbjct: 1223 -GKLVASGSVDYTIKLWDPATGTLRQTLEGHSGPVLAVAFSPDGKLTASGSYDK----TV 1277 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LT 298 L D + + + + FS +GK S D+ + ++ D + + L Sbjct: 1278 KLWDPATGTLRQALEDHSGPVQTVAFSPDGK-LTASGSYDKTVKLW--DPATGTLRQTLE 1334 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + + ++SP+S + S + + + ++ + +SP G Sbjct: 1335 GHSDLIQTVAFSPNSKLVASGSY---DKTVKLWDLATGTLRQTFEGHSDLVRVVAFSPDG 1391 Query: 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGS 416 L A + + + R +E S+++A +SP G+ + D Sbjct: 1392 KLTASGSYDKT---VKLWDLATGTLRQTLEGHSSSVRAVVFSPKGKLVASGSY---DKTV 1445 Query: 417 KLYSIDLNGRNETL 430 KL+ +TL Sbjct: 1446 KLWDPATGTLRQTL 1459 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 14/189 (7%) Query: 219 FSPNQQ--KVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 F+P + Y + + +++ + + + A FS +GK S Sbjct: 919 FAPKGSVIRNKYIDKIPNWVRGLPEVESAWSAVQQTLEGHSGSVFAVAFSPDGKLVA-SG 977 Query: 277 QKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 D + ++ DL + + L + ++SP + SD + + + Sbjct: 978 SVDYTIKLW--DLATGTLRQTLEGHSSSVRAVAFSPKGKLVASGSD---DKTVKLWDLAT 1032 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQ 393 ++ + S F +SP G L+A + + R +ED +Q Sbjct: 1033 GTLRQTLEGHSGSVFAVAFSPDGKLVASGSDDKT---VKLWDLATGTLRQTLEDHSGPVQ 1089 Query: 394 APTWSPSGR 402 +SP G+ Sbjct: 1090 TVAFSPDGK 1098 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 34/243 (13%) Query: 120 GKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILF 179 +LWD + R+ SD I Sbjct: 1311 ASGSYDKTVKLWDPATG-------------TLRQTLEGHSDLIQTVAFSPN--------- 1348 Query: 180 VSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV 239 S+ V SG ++ + D +R ++ FSP+ + A +YD V Sbjct: 1349 -SKLVASGSYDKTVKLWDLATGTLRQTFEGHSDLVRVVAFSPDGKLTASGSYDK----TV 1403 Query: 240 YLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LT 298 L D + + S + A FS GK S D+ + ++ D + + L Sbjct: 1404 KLWDLATGTLRQTLEGHSSSVRAVVFSPKGKLVA-SGSYDKTVKLW--DPATGTLRQTLE 1460 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + +SP+ +V S + + + + ++ +D +SP G Sbjct: 1461 GHSGPVQTVVFSPNGKLLVSGSY---DKTVKLWDLSTGTLRQTLEDHSGLVRVVAFSPDG 1517 Query: 359 DLI 361 + Sbjct: 1518 KFL 1520 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 61/199 (30%), Gaps = 39/199 (19%) Query: 108 AQVLVTGRVIKEG----KDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIY 163 + ++ +G +LWD+ + + +S R + Sbjct: 1379 SDLVRVVAFSPDGKLTASGSYDKTVKLWDLATGT--LRQTLEGHSSSVRAV--------- 1427 Query: 164 QSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQ 223 + KG + V SG ++ + D +R + FSPN Sbjct: 1428 --VFSPKG----------KLVASGSYDKTVKLWDPATGTLRQTLEGHSGPVQTVVFSPNG 1475 Query: 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD 283 + + +YD V L D + + + ++ FS +GK + Sbjct: 1476 KLLVSGSYDK----TVKLWDLSTGTLRQTLEDHSGLVRVVAFSPDGKFL--------ETN 1523 Query: 284 IYSVDLQSNATERLTNTLF 302 ++ +S+ L+ T Sbjct: 1524 QGRLNTESHHVRSLSQTPS 1542 >gi|94967294|ref|YP_589342.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] gi|94549344|gb|ABF39268.1| serine/threonine protein kinase [Candidatus Koribacter versatilis Ellin345] Length = 894 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 13/230 (5%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI--S 275 FS A + + R ++ + + A S NG+ + Sbjct: 586 TFSSTGTGAVLAQLRTGNAVSQLTWFDRSGKSLGDVAD-PDYFGALSLSPNGQSLAVDKV 644 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 + D++ +DL A R+T I+ +SP +S+I F ++RE +Y +G Sbjct: 645 DSGSQNTDVWLLDLHGGAPRRITFDPSIDALPVWSPAASEIAFVTNRELHFSVYRKSVDG 704 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAP 395 + + + + WS G + +G + +E L S L+ Sbjct: 705 HATESVLINDLPDNYPNDWSRDGKYFLYVHGTGLWYL--TFSDMTKKEFLNAGTSALKTG 762 Query: 396 TWSPSGRSLIFSRKKDGDTGSKLYSI---DLNGRNETLINTPAYASDPQW 442 +SP G+ + ++ + G ++Y D G+ E + P W Sbjct: 763 HFSPDGKWIAYASNESGKW--EIYVTSFPDAKGKWEI---SSGGGEQPHW 807 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 95/294 (32%), Gaps = 11/294 (3%) Query: 120 GKDRLRV-EFRLWDVKDRKQIIGKKFFSSPASWR-KIAHTISDDIYQSITGEKGDFNSRI 177 + L+ + ++F ++ + A +SD Y ++ Sbjct: 535 SNGSYAAPGYLLY--YRDNTLFAQRFNATKLQLEGEPAALLSDLQYMPRIQRATFSSTGT 592 Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 V + +G + L DR G ++ + SPN Q +A D Sbjct: 593 GAVLAQLRTGNAVSQLTWFDRSGKSLGDVADPDYFGAL--SLSPNGQSLAVDKVDSGSQN 650 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE-R 296 + AP+RI S+ P +S ++ +Y + +ATE Sbjct: 651 TDVWLLDLHGGAPRRITFDPSIDALPVWSPAASEIAFVTNRELHFSVYRKSVDGHATESV 710 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 L N L N +S D ++ L+ + + +K ++ +SP Sbjct: 711 LINDLPDNYPNDWSRDGKYFLYV----HGTGLWYLTFSDMTKKEFLNAGTSALKTGHFSP 766 Query: 357 QGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 G IA+ K+ I V ++ + + + P W G+ L + Sbjct: 767 DGKWIAYASNESGKWEIYVTSFPDAKGKWEISSGGGEQPHWRGDGKELYYLSSS 820 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 50/358 (13%), Positives = 101/358 (28%), Gaps = 75/358 (20%) Query: 145 FSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIR 204 S + A + G + + + SE+ +GI L G+ Sbjct: 340 SSPATQAQYFAAPFTFTARDLTIAPNGHTVAVVGYRSEAHKNGIFLYEL------GSQNV 393 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 L P D F P +S + + + + D + RV + G Sbjct: 394 RLVPDTDGASF-PFWSADGLSLGF--FADGKLRRVDIAGGPAQTLCDAPGGRGG-----T 445 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS-----ASYSPDSSQIVFE 319 ++ +G + + ++ + E+LT + PD ++ Sbjct: 446 WNKDG-VIVFTPSGALRTGLWRISAAGGKPEQLTTPDASKGEDGHRWPVFLPDGQHYIYT 504 Query: 320 ---------------------------------SDREGKEQLYVMQSNGSDQK------R 340 S LY + Q+ + Sbjct: 505 IFNNTVHTEFAGLAVGALGSKEQHFLLHAISNGSYAAPGYLLYYRDNTLFAQRFNATKLQ 564 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-------EDSNLQ 393 + + A D + P+ F+ A+ + G+ L ++ Sbjct: 565 LEGEPAALLSDLQYMPRIQRATFSSTGTG--AVLAQLRTGNAVSQLTWFDRSGKSLGDVA 622 Query: 394 APTW------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQWVG 444 P + SP+G+SL + G + ++ +DL+G I P+ + P W Sbjct: 623 DPDYFGALSLSPNGQSLAVDKVDSGSQNTDVWLLDLHGGAPRRITFDPSIDALPVWSP 680 >gi|317479784|ref|ZP_07938904.1| hypothetical protein HMPREF1007_02020 [Bacteroides sp. 4_1_36] gi|316903990|gb|EFV25824.1| hypothetical protein HMPREF1007_02020 [Bacteroides sp. 4_1_36] Length = 1085 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 111/303 (36%), Gaps = 42/303 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN + ++ + +RYL+ + D L + + Sbjct: 231 FYYLSEENGSFN-------IYRRTPGDAKAVQLTHYTKNPVRYLSAATDGRLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + + ++ R D+ R S +GK ++ D Sbjct: 281 GEIYTLLPGGEAQKVNISIVSDRNDKDIIRQIKSSGATEM-AVSPDGKEVAFVLRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT + ++PD +V+ S+R G QLY D+K + Sbjct: 337 -VYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKLFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + +A+ F P +SP G IAF + I V+ R +++ Sbjct: 396 YATELKEERLTNSDAASFQPQYSPDGKEIAFLENRST---IRVINLKTKDVRTVMDGKYQ 452 Query: 393 QAPT-------WSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRNE--TLINTPAYASDP 440 + + WSP + ++ G + ++ +G+ E L + + Sbjct: 453 YSYSDGDQWFQWSPDSKWIL--SDYIGVGGWNNKDVVLLNADGKGEMVNLTESGYNDGNA 510 Query: 441 QWV 443 +WV Sbjct: 511 KWV 513 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 34/220 (15%) Query: 253 IGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINIS 306 + F AP + S +G + + D IY+V + ++T + + Sbjct: 13 LAGFTFAQDAPLWMRHSVISPDGTTIAFTYKGD----IYTVPVAGGRAMQITTNPAYDTA 68 Query: 307 ASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-----------QDKEASYFDPVWS 355 +SPDS +I F SDR G +Y++ +G + +R++ D F Sbjct: 69 PVWSPDSKRIAFASDRMGSLDVYIVAKDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIM 128 Query: 356 PQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI--------FS 407 P + + F +G+ + + +G + ++ ++ + + G L + Sbjct: 129 PSAEAVVFPS-NGQFNQVYRVSVEGGRPTMISSMP-MECISINKEGAMLYQDKKGYEDYW 186 Query: 408 RKKD-GDTGSKLYSIDLNGRNE--TLINTPAYASDPQWVG 444 RK ++ + L +P W Sbjct: 187 RKHHVSPIARDIWMYTPGKEPQYRQLTTFGGEDREPVWAP 226 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 37/229 (16%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + SP+ +A+ DI V + R +I + AP +S + KR Sbjct: 25 WMRHSVISPDGTTIAFTY--KGDIYTVPVAGGRAM----QITTNPAYDTAPVWSPDSKRI 78 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINI------------SASYSPDSSQIVFES 320 + + ++D+Y V RLT SA P + +VF S Sbjct: 79 AFASDRMGSLDVYIVAKDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPS 138 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------- 371 + Q+Y + G IS + +G ++ K E + Sbjct: 139 N-GQFNQVYRVSVEGGRPTMISSMP---MECISINKEGAMLYQDKKGYEDYWRKHHVSPI 194 Query: 372 --AIGVMKKDGSQE---RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 I + G + +L + P W+P G++ + +++G Sbjct: 195 ARDIWMYTP-GKEPQYRQLTTFGGEDREPVWAPDGKTFYYLSEENGSFN 242 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 108/398 (27%), Gaps = 136/398 (34%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 ++ + ++ K + + G +T P +SP+ +++A+A+ Sbjct: 29 SVISPDGTTIAFTYKGDIYTVPVAGGRAMQITT-NPAYDTAPVWSPDSKRIAFASDRMGS 87 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMIL---------------------APRFSSNGKR--- 271 L VY++ + P+R+ A F SNG+ Sbjct: 88 -LDVYIVA-KDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPSNGQFNQV 145 Query: 272 ALISVQKDEAMDIYSVDLQ---------------------------------------SN 292 +SV+ I S+ ++ Sbjct: 146 YRVSVEGGRPTMISSMPMECISINKEGAMLYQDKKGYEDYWRKHHVSPIARDIWMYTPGK 205 Query: 293 AT--ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------- 342 +LT + ++PD + S+ G +Y + +++ Sbjct: 206 EPQYRQLTTFGGEDREPVWAPDGKTFYYLSEENGSFNIYRRTPGDAKAVQLTHYTKNPVR 265 Query: 343 -------------QDKEASYFDP--------------------------------VWSPQ 357 D E P SP Sbjct: 266 YLSAATDGRLCYGFDGEIYTLLPGGEAQKVNISIVSDRNDKDIIRQIKSSGATEMAVSPD 325 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG---- 412 G +AF + V + + + + ++P GR+L+++ ++ G Sbjct: 326 GKEVAFVLRGD----VYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQL 381 Query: 413 ------DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 KL++ + E L N+ A + PQ+ Sbjct: 382 YTSTIVRKDEKLFTYATELKEERLTNSDAASFQPQYSP 419 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F+P++SP+ +++A+ ++ + D R K ++ ++ Sbjct: 405 LTNSDAASFQPQYSPDGKEIAFLENRSTIRVINLKTKDVRTVMDGKYQYSYSDGDQWFQW 464 Query: 266 SSNGKRAL---ISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K L I V D+ ++ LT + + + +A + +++ SD Sbjct: 465 SPDSKWILSDYIGVGGWNNKDVVLLNADGKGEMVNLTESGYNDGNAKWVLGGKAMIWTSD 524 Query: 322 REG 324 R G Sbjct: 525 RAG 527 >gi|242805545|ref|XP_002484554.1| G-protein beta WD- 40 repeats containing protein, putative [Talaromyces stipitatus ATCC 10500] gi|218715179|gb|EED14601.1| G-protein beta WD- 40 repeats containing protein, putative [Talaromyces stipitatus ATCC 10500] Length = 1211 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 111/327 (33%), Gaps = 38/327 (11%) Query: 117 IKEGKDRLRVEFRLWDVKDR---KQIIGKKFFSSP----ASWRKIAHTISDDIYQSITGE 169 + L +LWD K + G ++IA + D + Sbjct: 742 KQIASGSLDDTIKLWDATTGDLQKTLAGHSSAVMKVAFSPDGKQIASSSDDKTIKLWDAA 801 Query: 170 KGD-------FNSRILFVSES-----VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP 217 GD +S ++ V+ S + SG ++ D +++ + Sbjct: 802 TGDLQKILAGHSSGVITVAFSPDGKQIASGSNDKTIKFWDAATGDLQKTLAGHSSAVVTV 861 Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 FS + +++A +YD + D K + ++ FS +GK+ S Sbjct: 862 AFSSDGKQIASGSYD----CTIKRWDATTGNLQKTLVGHSGLVQTVAFSPDGKQIA-SGS 916 Query: 278 KDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D+ + ++ D + ++ L + ++SPD QI S+ + + + + Sbjct: 917 LDDTIKLW--DATTGDLQKTLAGHSSAVMKVAFSPDGKQIASGSE---DDTIKLWDAATG 971 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER--LLVEDSNLQA 394 D ++ ++ +SP G IA I + + L+ +Q Sbjct: 972 DLQKTLAVHSSAVVTVAFSPDGKQIASGSDDNT---IKLWDATTGNLQKTLVGHSGLVQT 1028 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSI 421 +SP G+ + D K++ I Sbjct: 1029 VAFSPDGKQIASVSD---DKTIKVWDI 1052 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 99/274 (36%), Gaps = 29/274 (10%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + SG +++ + D +++ + + FSP+ +++A ++DD + L Sbjct: 658 KQIASGSDDDTIKLWDAATGDLQKTLAGDSRGVVTVAFSPDGKQIASGSHDD----TIKL 713 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D K + + S + FS +GK+ S D+ + ++ D + ++ L Sbjct: 714 WDATTGDLQKTLADHLSSVCTIAFSPDGKQIA-SGSLDDTIKLW--DATTGDLQKTLAGH 770 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + ++SPD QI SD + + + + D ++I + +SP G Sbjct: 771 SSAVMKVAFSPDGKQIASSSD---DKTIKLWDAATGDLQKILAGHSSGVITVAFSPDGKQ 827 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 IA I + + S + +S G+ + G + Sbjct: 828 IASGSNDKT---IKFWDAATGDLQKTLAGHSSAVVTVAFSSDGKQIA-----SGSYDCTI 879 Query: 419 YSIDLNGRNET--------LINTPAYASDPQWVG 444 D N L+ T A++ D + + Sbjct: 880 KRWDATTGNLQKTLVGHSGLVQTVAFSPDGKQIA 913 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 87/227 (38%), Gaps = 16/227 (7%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + SG N++ + D +++ + FSP+ +++A + DD + L Sbjct: 616 NQIASGSDDNTIKLWDATTGDLQETLTGHLGRVLTVDFSPDGKQIASGSDDD----TIKL 671 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D K + ++ FS +GK+ S D+ + ++ D + ++ L + Sbjct: 672 WDAATGDLQKTLAGDSRGVVTVAFSPDGKQIA-SGSHDDTIKLW--DATTGDLQKTLADH 728 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 L + ++SPD QI S + + + + D ++ ++ +SP G Sbjct: 729 LSSVCTIAFSPDGKQIASGSL---DDTIKLWDATTGDLQKTLAGHSSAVMKVAFSPDGKQ 785 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 IA + I + + ++ S + +SP G+ + Sbjct: 786 IASSSDDKT---IKLWDAATGDLQKILAGHSSGVITVAFSPDGKQIA 829 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 27/254 (10%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI 260 A++ + FSP+ ++A + D+ + L D + + + Sbjct: 593 ASLIQTLAGHSCPVLTVAFSPDGNQIASGSDDN----TIKLWDATTGDLQETLTGHLGRV 648 Query: 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFE 319 L FS +GK+ S D+ + ++ D + ++ L ++ ++SPD QI Sbjct: 649 LTVDFSPDGKQIA-SGSDDDTIKLW--DAATGDLQKTLAGDSRGVVTVAFSPDGKQIASG 705 Query: 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 S + + + + D ++ D +S +SP G IA I + Sbjct: 706 SH---DDTIKLWDATTGDLQKTLADHLSSVCTIAFSPDGKQIASGSLDDT---IKLWDAT 759 Query: 380 GSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN----- 432 + + S + +SP G+ + S D KL+ G + ++ Sbjct: 760 TGDLQKTLAGHSSAVMKVAFSPDGKQIASSSD---DKTIKLWDA-ATGDLQKILAGHSSG 815 Query: 433 --TPAYASDPQWVG 444 T A++ D + + Sbjct: 816 VITVAFSPDGKQIA 829 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 84/219 (38%), Gaps = 14/219 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 + + SG ++ D N++ ++ FSP+ +++A + DD + L Sbjct: 868 KQIASGSYDCTIKRWDATTGNLQKTLVGHSGLVQTVAFSPDGKQIASGSLDD----TIKL 923 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 D K + S ++ FS +GK+ S +D+ + ++ D + ++ L Sbjct: 924 WDATTGDLQKTLAGHSSAVMKVAFSPDGKQIA-SGSEDDTIKLW--DAATGDLQKTLAVH 980 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 ++ ++SPD QI SD + + + + ++ +SP G Sbjct: 981 SSAVVTVAFSPDGKQIASGSD---DNTIKLWDATTGNLQKTLVGHSGLVQTVAFSPDGKQ 1037 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLL--VEDSNLQAPTW 397 IA + + + K + L S+ ++ +W Sbjct: 1038 IASVS-DDKTIKVWDIAKSLKASQYLGHTFSSHFKSRSW 1075 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 22/215 (10%) Query: 204 RYLTPSRDQILFEP--------RFSPNQQKVAYATYDDEDIL--RVYLMDTRIDRAPKRI 253 R+L + P FSP V D + +V M+ + + Sbjct: 540 RFLLRHYHTLTHWPLQVYSSAIVFSPESSVVKRENLDKIPVWLRKVPPMEDSWASLIQTL 599 Query: 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPD 312 +L FS +G + S D + ++ D + + LT L ++ +SPD Sbjct: 600 AGHSCPVLTVAFSPDGNQIA-SGSDDNTIKLW--DATTGDLQETLTGHLGRVLTVDFSPD 656 Query: 313 SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 QI SD + + + + D ++ +SP G IA Sbjct: 657 GKQIASGSD---DDTIKLWDAATGDLQKTLAGDSRGVVTVAFSPDGKQIASGSHDDT--- 710 Query: 373 IGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLI 405 I + + + D S++ +SP G+ + Sbjct: 711 IKLWDATTGDLQKTLADHLSSVCTIAFSPDGKQIA 745 Score = 38.8 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 56/160 (35%), Gaps = 11/160 (6%) Query: 75 RSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVK 134 S + ++ ++I + + W++ TG + K ++ Sbjct: 896 HSGLVQTVAFSPDGKQIASGSLDDTIKLWDAT------TGDLQKTLAGHSSAVMKVAFSP 949 Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVS-ESVVSGIIKNSL 193 D KQI S K+ + D+ +++ + + + SG N++ Sbjct: 950 DGKQIAS----GSEDDTIKLWDAATGDLQKTLAVHSSAVVTVAFSPDGKQIASGSDDNTI 1005 Query: 194 CVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + D N++ ++ FSP+ +++A + D Sbjct: 1006 KLWDATTGNLQKTLVGHSGLVQTVAFSPDGKQIASVSDDK 1045 >gi|83815972|ref|YP_444562.1| hypothetical protein SRU_0417 [Salinibacter ruber DSM 13855] gi|83757366|gb|ABC45479.1| hypothetical protein SRU_0417 [Salinibacter ruber DSM 13855] Length = 982 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 11/235 (4%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ ++A T L G ++ + +G+R S + Sbjct: 303 AYSPDTSRIAALTQHSPARPVRRLHVIDPSTGAVTRGAEGAIEPPVAWHPSGERIAFSRR 362 Query: 278 -----KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 D++ VD RLT+ + ++ PD ++ F + G +++ Sbjct: 363 TRAAHGSLVDDVFVVDADGTDERRLTHGRRTSA-PTFGPDGDRLAFVATEGGTANVHLRA 421 Query: 333 SNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-S 390 R++ + + W P D +AF + S + + + D L + + Sbjct: 422 LKTGGTTRVTDYEGDVQITALRWHPTQDTLAFARVSEAERELVLYDLDTGASTALTDPAT 481 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 + + P WSP G L ++ +DG + +Y + + R T + A D WV Sbjct: 482 DDRRPVWSPDGSQLAYTSLRDGVPNALVYDLSTHTHRRATHLVRGATVHD--WVP 534 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 18/234 (7%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS---------RILFVSESVV 185 D +I S R++ H I G +G RI F + Sbjct: 307 DTSRIAALTQHSPARPVRRL-HVIDPSTGAVTRGAEGAIEPPVAWHPSGERIAFSRRTRA 365 Query: 186 S-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + G + + + V+D DG + R LT R P F P+ ++A+ + V+L Sbjct: 366 AHGSLVDDVFVVDADGTDERRLTHGR--RTSAPTFGPDGDRLAFVA-TEGGTANVHLRAL 422 Query: 245 RIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + R+ ++ + A R+ + + ++ DL + A+ LT+ Sbjct: 423 KTGG-TTRVTDYEGDVQITALRWHPTQDTLAFARVSEAERELVLYDLDTGASTALTDPAT 481 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + +SPD SQ+ + S R+G V + +R + + W P Sbjct: 482 DDRRPVWSPDGSQLAYTSLRDGVPNALVYDLSTHTHRRATHLVRGA-TVHDWVP 534 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 65/187 (34%), Gaps = 7/187 (3%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G R+ FV+ + + + G R D + R+ P Q +A+A Sbjct: 399 GPDGDRLAFVATEGGTANVHLR---ALKTGGTTRVTDYEGDVQITALRWHPTQDTLAFAR 455 Query: 231 YDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + E L +Y +DT + + + P +S +G + + +D + DL Sbjct: 456 VSEAERELVLYDLDTGAS---TALTDPATDDRRPVWSPDGSQLAYTSLRDGVPNALVYDL 512 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 ++ R T+ + + P S ES R E V + S + + A Sbjct: 513 STHTHRRATHLVRGATVHDWVPADSAFGAESSRAAPEGALVTSTALSKARDGAFRLPAHR 572 Query: 350 FDPVWSP 356 +P Sbjct: 573 TARSIAP 579 >gi|319652377|ref|ZP_08006493.1| hypothetical protein HMPREF1013_03106 [Bacillus sp. 2_A_57_CT2] gi|317395839|gb|EFV76561.1| hypothetical protein HMPREF1013_03106 [Bacillus sp. 2_A_57_CT2] Length = 623 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 120/334 (35%), Gaps = 26/334 (7%) Query: 117 IKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSR 176 ++ G R+ R ++V + + R + S ++ + Sbjct: 123 VQPGDTLYRLAIR-FNVMTNGEP-------NTEHIRFVNQLSSSQLFPGMKLRIPYAPPG 174 Query: 177 ILFVSESVVSGIIKNSLCVMD-RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 + + + + + R G N++ LT P +SPN +++A+ Sbjct: 175 GQGLIAYTADRGGQYDIWLYNPRTGENVQ-LTSGLGDSFSSPEWSPNSRRIAFI----GK 229 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE 295 +Y++D + +S + + + Q I ++ S+ E Sbjct: 230 NRIIYVVDVASGAIAQIDQMEEGAEFKLDWSPDSSQIAYTKQG----HIILYNVLSHQAE 285 Query: 296 RLTNTLFINISASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVW 354 + + ++ + P +++F++ D G QL+ +Q++GS +++I+++ + Sbjct: 286 SIQQSDSTDVQ--WFPSGRELLFQAPDESGISQLFRIQTDGSGKQQITRNTGGRLNNAQL 343 Query: 355 SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDG 412 SP G + +T I ++ + PTWSP ++ +S Sbjct: 344 SPNGSFVLYTTPGVSISIIHTIELSTGNVVEVKGGPLAKNYYPTWSPDSLNIAYSATAFE 403 Query: 413 DTG--SKLYSIDLNGRNETLINTPAYASDP-QWV 443 D G S++ ++ G + + + P W Sbjct: 404 DRGYFSQVRTVGRRGEEDRIWAISNCFASPVTWS 437 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 9/189 (4%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK 278 + P+ +++ + D+ I +++ + T + N + + S NG L + Sbjct: 297 WFPSGRELLFQAPDESGISQLFRIQTDGSGKQQITRNTGGRLNNAQLSPNGSFVLYTTPG 356 Query: 279 DEAMDIYSVDLQSNATERLTNTL-FINISASYSPDSSQIVFES----DREGKEQLYVMQS 333 I++++L + + N ++SPDS I + + DR Q+ + Sbjct: 357 VSISIIHTIELSTGNVVEVKGGPLAKNYYPTWSPDSLNIAYSATAFEDRGYFSQVRTVGR 416 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK---FAIGVMKKDGSQERLLVEDS 390 G + RI WS G IA+ E+ + + L+ Sbjct: 417 RGEED-RIWAISNCFASPVTWSTDGTKIAYLSGCKEQEFASEMWAIDLRHPVPIRLIAGV 475 Query: 391 NLQAPTWSP 399 N+Q+ WSP Sbjct: 476 NIQSLQWSP 484 >gi|220915253|ref|YP_002490557.1| peptidase S9 prolyl oligopeptidase active site domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953107|gb|ACL63491.1| peptidase S9 prolyl oligopeptidase active site domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 674 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 33/246 (13%) Query: 218 RFSPNQQKVAYA----TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 SP+ VAY + E ++ + A +R+ + +P FS +G+R Sbjct: 33 AVSPDGASVAYTVATSSAGGEKLVSALHLVPAAGGAARRLTFGEERVTSPAFSPDGRRIA 92 Query: 274 ISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 + + +DLQ R+T+ ++PD + +V SD + + Sbjct: 93 FLSNRKGGTQAWVLDLQGGEARRVTDLPGGVSELRFTPDGAALVVASDVD--------PA 144 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV----MKKDGSQERLLVED 389 G+D + A+ P + D + F ++ + + + DG L Sbjct: 145 CGADAACNRKADAAAEVRPHLT---DRLLFRHWNEWRERVRTHLVRVPLDGGPAVDLTPG 201 Query: 390 SNLQAP---------TWSPSGRSLIFSRKKDG----DTGSKLYSIDLNGRNETLINT-PA 435 P +SP G++L + D T +Y++ L G + T P Sbjct: 202 DRDAPPVQRGSGDDLAFSPDGKTLYYVAVSDPVEATSTNGDVYAVPLAGGTPRRVTTAPG 261 Query: 436 YASDPQ 441 + P+ Sbjct: 262 WDGSPR 267 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 113/316 (35%), Gaps = 67/316 (21%) Query: 176 RILFVSESVVSGIIK--NSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + + + +G K ++L ++ G R LT +++ P FSP+ +++A+ + + Sbjct: 40 SVAYTVATSSAGGEKLVSALHLVPAAGGAARRLTFGEERVT-SPAFSPDGRRIAFLS-NR 97 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA------------ 281 + + +++D + +R+ + + RF+ +G +++ D A Sbjct: 98 KGGTQAWVLDLQ-GGEARRVTDLPGGVSELRFTPDGAALVVASDVDPACGADAACNRKAD 156 Query: 282 --------------------------MDIYSVDLQSNATERLTNT--------LFINISA 307 + V L LT Sbjct: 157 AAAEVRPHLTDRLLFRHWNEWRERVRTHLVRVPLDGGPAVDLTPGDRDAPPVQRGSGDDL 216 Query: 308 SYSPDSSQIVF--ESDR----EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 ++SPD + + SD +Y + G +R++ P SP G + Sbjct: 217 AFSPDGKTLYYVAVSDPVEATSTNGDVYAVPLAGGTPRRVTT-APGWDGSPRPSPDGKRL 275 Query: 362 AF-----TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WSPSGRSLIFSRKKDGDT 414 A+ + ++F + V DGS R L + A W+ G++L F+ + +G Sbjct: 276 AWLAQPRAGYEADRFHVMVAAADGSGARDLTAGFDRSAADLEWARGGKALRFTAESEG-- 333 Query: 415 GSKLYSIDLNGRNETL 430 +Y +DL G+ L Sbjct: 334 VHAVYEVDLAGKVTEL 349 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 12/153 (7%) Query: 264 RFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV 317 FS +GK D D+Y+V L R+T + S SPD ++ Sbjct: 217 AFSPDGKTLYYVAVSDPVEATSTNGDVYAVPLAGGTPRRVTTAPGWDGSPRPSPDGKRLA 276 Query: 318 FESD-REG----KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 + + R G + + V ++GS + ++ + S D W+ G + FT S A Sbjct: 277 WLAQPRAGYEADRFHVMVAAADGSGARDLTAGFDRSAADLEWARGGKALRFTAESEGVHA 336 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 + + G + L NL +WS G L Sbjct: 337 VYEVDLAG-KVTELYRGRNLARVSWSRDGARLA 368 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 306 SASYSPDSSQIVF---ESDREGK---EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGD 359 A+ SPD + + + S G+ L+++ + G +R++ +E P +SP G Sbjct: 31 DAAVSPDGASVAYTVATSSAGGEKLVSALHLVPAAGGAARRLTFGEER-VTSPAFSPDGR 89 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPSGRSLIFSRKKD 411 IAF V+ G + R + + + ++P G +L+ + D Sbjct: 90 RIAFLSNRKGGTQAWVLDLQGGEARRVTDLPGGVSELRFTPDGAALVVASDVD 142 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 87/300 (29%), Gaps = 39/300 (13%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 RV + F D ++ + +D + + Sbjct: 115 RVTDLPGGVSELRF----TPDGAALVVASDVDPACGADAACNRKADAAAE----VRPHLT 166 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP---------RFSPNQQK 225 R+LF + ++ L + DG LTP P FSP+ + Sbjct: 167 DRLLFRHWNEWRERVRTHLVRVPLDGGPAVDLTPG--DRDAPPVQRGSGDDLAFSPDGKT 224 Query: 226 VAYATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKD-- 279 + Y D D P+R+ +PR S +GKR Q Sbjct: 225 LYYVAVSDPVEATSTNGDVYAVPLAGGTPRRVTTAPGWDGSPRPSPDGKRLAWLAQPRAG 284 Query: 280 ---EAMDIYSVDLQSNATERLTNTLFINISAS---YSPDSSQIVFESDREGKEQLYVMQS 333 + + + LT + SA+ ++ + F ++ EG +Y + Sbjct: 285 YEADRFHVMVAAADGSGARDLT--AGFDRSAADLEWARGGKALRFTAESEGVHAVYEVDL 342 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLI-AFTKFSGEKFAIGVMKKD--GSQERLLVEDS 390 G + + + WS G + A + V++ G Q RLL Sbjct: 343 AGKVTEL---YRGRNLARVSWSRDGARLAALVDGLAAPPEVAVLEPGARGPQPRLLTGFG 399 >gi|294506310|ref|YP_003570368.1| hypothetical protein SRM_00495 [Salinibacter ruber M8] gi|294342638|emb|CBH23416.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 992 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 11/235 (4%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 +SP+ ++A T L G ++ + +G+R S + Sbjct: 313 AYSPDTSRIAALTQHSPARPVRRLHVIDPSTGAVTRGAEGAIEPPVAWHPSGERIAFSRR 372 Query: 278 -----KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQ 332 D++ VD RLT+ + ++ PD ++ F + G +++ Sbjct: 373 TRAAHGSLVDDVFVVDADGTDERRLTHGRRTSA-PTFGPDGDRLAFVATEGGTANVHLRA 431 Query: 333 SNGSDQKRIS-QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-S 390 R++ + + W P D +AF + S + + + D L + + Sbjct: 432 LKTGGTTRVTDYEGDVQITALRWHPTQDTLAFARVSEAERELVLYDLDTGASTALTDPAT 491 Query: 391 NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG-RNETLINTPAYASDPQWVG 444 + + P WSP G L ++ +DG + +Y + + R T + A D WV Sbjct: 492 DDRRPVWSPDGSQLAYTSLRDGVPNAFVYDLSTHTHRRATHLVRGATVHD--WVP 544 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 12/221 (5%) Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEP-RFSPNQQKVAYATYD 232 SRI +++ + ++ + GA +T + + P + P+ +++A++ Sbjct: 318 TSRIAALTQHSPARPVRRLHVIDPSTGA----VTRGAEGAIEPPVAWHPSGERIAFSRRT 373 Query: 233 ---DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 ++ + +R+ + R AP F +G R + +++ L Sbjct: 374 RAAHGSLVDDVFVVDADGTDERRLTHGRR-TSAPTFGPDGDRLAFVATEGGTANVHLRAL 432 Query: 290 QSNATERLTNTLFIN--ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA 347 ++ T R+T+ + + P + F E + +L + + ++ D Sbjct: 433 KTGGTTRVTDYEGDVQITALRWHPTQDTLAFARVSEAERELVLYDLDTGASTALT-DPAT 491 Query: 348 SYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE 388 PVWSP G +A+T V R Sbjct: 492 DDRRPVWSPDGSQLAYTSLRDGVPNAFVYDLSTHTHRRATH 532 Score = 90.8 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 18/234 (7%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNS---------RILFVSESVV 185 D +I S R++ H I G +G RI F + Sbjct: 317 DTSRIAALTQHSPARPVRRL-HVIDPSTGAVTRGAEGAIEPPVAWHPSGERIAFSRRTRA 375 Query: 186 S-GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDT 244 + G + + + V+D DG + R LT R P F P+ ++A+ + V+L Sbjct: 376 AHGSLVDDVFVVDADGTDERRLTHGR--RTSAPTFGPDGDRLAFVA-TEGGTANVHLRAL 432 Query: 245 RIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 + R+ ++ + A R+ + + ++ DL + A+ LT+ Sbjct: 433 KTGG-TTRVTDYEGDVQITALRWHPTQDTLAFARVSEAERELVLYDLDTGASTALTDPAT 491 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSP 356 + +SPD SQ+ + S R+G +V + +R + + W P Sbjct: 492 DDRRPVWSPDGSQLAYTSLRDGVPNAFVYDLSTHTHRRATHLVRGA-TVHDWVP 544 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 7/170 (4%) Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 G R+ FV+ + + + G R D + R+ P Q +A+A Sbjct: 409 GPDGDRLAFVATEGGTANVHLR---ALKTGGTTRVTDYEGDVQITALRWHPTQDTLAFAR 465 Query: 231 YDD-EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 + E L +Y +DT + + + P +S +G + + +D + + DL Sbjct: 466 VSEAERELVLYDLDTGAS---TALTDPATDDRRPVWSPDGSQLAYTSLRDGVPNAFVYDL 522 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQK 339 ++ R T+ + + P S ES R E V + S + Sbjct: 523 STHTHRRATHLVRGATVHDWVPADSAFGAESSRAAPEGALVTSTALSKAR 572 >gi|153004922|ref|YP_001379247.1| WD40 domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028495|gb|ABS26263.1| WD40 domain protein beta Propeller [Anaeromyxobacter sp. Fw109-5] Length = 1206 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 11/199 (5%) Query: 187 GIIKNSLCVMD----RDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL---RV 239 G + V D D R +R + +P +P +AY L R Sbjct: 400 GEVHREYRVYDDLHRVDLRTGRRTRLTRGERATDPDLAPGGAFLAYVQRTGPGALALVRR 459 Query: 240 YLMDTRIDRAPKRIGNFRSM-ILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT 298 L A + + + R + PR S +G+R +Q++ D+ + R+T Sbjct: 460 PLDAAGRLGAREVLFSRRGAEVYQPRVSPDGRRIAFELQEEGRRDLAL--WEDGRVTRIT 517 Query: 299 NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQG 358 + ++ S +++PD ++F SDR G LY ++ D +++ + E P SP G Sbjct: 518 DDGALDTSPAWTPDGRHLLFASDRGGLYNLYAWEAATGDVAQVT-NVETGALQPDVSPDG 576 Query: 359 DLIAFTKFSGEKFAIGVMK 377 IAF +S + + + Sbjct: 577 RTIAFLLYSRAGYDVATIP 595 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 90/319 (28%), Gaps = 67/319 (21%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQ-ILFEPRFSP----NQQKVA-----YATYDDED 235 G L DGA Y+ Q + P + + A YA + Sbjct: 255 GGRFMAYLQARYGDGAIAGYVGRQGAQLWPYAPSWVGRRFFGGRTFAQLWAEYADAERRR 314 Query: 236 ILRVYL-MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSNA 293 V + R P+R+ PR+S +G + D +Y V Sbjct: 315 AEEVVAAVRARPVTRPRRLTTRGGRAENPRWSPDGTFLAYWRRPLDGRPALYRVSPDGRD 374 Query: 294 TERLTNTLFINI----------------------------------------------SA 307 +T Sbjct: 375 LGAVTTVDANGTLTLRSPDQAIAAIGEVHREYRVYDDLHRVDLRTGRRTRLTRGERATDP 434 Query: 308 SYSPDSSQIVFESDREGKEQLYVM----QSNG--SDQKRISQDKEASYFDPVWSPQGDLI 361 +P + + + R G L ++ + G ++ + + A + P SP G I Sbjct: 435 DLAPGGAFLAYV-QRTGPGALALVRRPLDAAGRLGAREVLFSRRGAEVYQPRVSPDGRRI 493 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSI 421 AF + + + + DG R+ + + +P W+P GR L+F+ + G + Sbjct: 494 AFELQEEGRRDLALWE-DGRVTRITDDGALDTSPAWTPDGRHLLFASDRGGLYNLYAWEA 552 Query: 422 DLNGRNETLINTPAYASDP 440 G + N A P Sbjct: 553 -ATGDVAQVTNVETGALQP 570 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 77/246 (31%), Gaps = 11/246 (4%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E ++ F++ + +L + DG ++ +T R SP+Q A Sbjct: 340 AENPRWSPDGTFLAYWRRPLDGRPALYRVSPDGRDLGAVTTVDANGTLTLR-SPDQAIAA 398 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS- 286 E + L + + P + G + Sbjct: 399 IGEVHREYRVYDDLHRVDLRTGRRTRLTRGERATDPDLAPGGAFLAYVQRTGPGALALVR 458 Query: 287 --VDLQS--NATERLTNTLFINI-SASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 +D A E L + + SPD +I FE EG+ L + RI Sbjct: 459 RPLDAAGRLGAREVLFSRRGAEVYQPRVSPDGRRIAFELQEEGRRDLALW--EDGRVTRI 516 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSPS 400 + D A P W+P G + F G + + + + ++ P SP Sbjct: 517 TDDG-ALDTSPAWTPDGRHLLFASDRGGLYNLYAWEAATGDVAQVTNVETGALQPDVSPD 575 Query: 401 GRSLIF 406 GR++ F Sbjct: 576 GRTIAF 581 >gi|160890688|ref|ZP_02071691.1| hypothetical protein BACUNI_03133 [Bacteroides uniformis ATCC 8492] gi|156859687|gb|EDO53118.1| hypothetical protein BACUNI_03133 [Bacteroides uniformis ATCC 8492] Length = 1111 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 111/303 (36%), Gaps = 42/303 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN + ++ + +RYL+ + D L + + Sbjct: 257 FYYLSEENGSFN-------IYRRTPGDAKAVQLTHYTKNPVRYLSAATDGRLC---YGFD 306 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + + ++ R D+ R S +GK ++ D Sbjct: 307 GEIYTLLPGGEAQKVNISIVSDRNDKDIIRQIKSSGATEM-AVSPDGKEVAFVLRGD--- 362 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT + ++PD +V+ S+R G QLY D+K + Sbjct: 363 -VYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKLFT 421 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + +A+ F P +SP G IAF + I V+ R +++ Sbjct: 422 YATELKEERLTNSDAASFQPQYSPDGKEIAFLENRST---IRVINLKTKDVRTVMDGKYQ 478 Query: 393 QAPT-------WSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRNE--TLINTPAYASDP 440 + + WSP + ++ G + ++ +G+ E L + + Sbjct: 479 YSYSDGDQWFQWSPDSKWIL--SDYIGVGGWNNKDVVLLNADGKGEMVNLTESGYNDGNA 536 Query: 441 QWV 443 +WV Sbjct: 537 KWV 539 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 84/252 (33%), Gaps = 37/252 (14%) Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------SSNGKRALI 274 P + + R+ + + A + F AP + S +G Sbjct: 10 PKGK---VVRFFYSPKTRIIMKKLLLGIAAACLAGFTFAQDAPLWMRHSVISPDGTTIAF 66 Query: 275 SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 + + D IY+V + ++T + + +SPDS +I F SDR G +Y++ + Sbjct: 67 TYKGD----IYTVPVAGGRAMQITTNPAYDTAPVWSPDSKRIAFASDRMGSLDVYIVAKD 122 Query: 335 GSDQKRIS-----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G + +R++ D F P + + F +G+ + + +G + Sbjct: 123 GGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPS-NGQFNQVYRVSVEGGRP 181 Query: 384 RLLVEDSNLQAPTWSPSGRSLI--------FSRKKD-GDTGSKLYSIDLNGRNE--TLIN 432 ++ ++ + + G L + RK ++ + L Sbjct: 182 TMISSMP-MECISINKEGAMLYQDKKGYEDYWRKHHVSPIARDIWMYTPGKEPQYRQLTT 240 Query: 433 TPAYASDPQWVG 444 +P W Sbjct: 241 FGGEDREPVWAP 252 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 37/229 (16%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + SP+ +A+ DI V + R +I + AP +S + KR Sbjct: 51 WMRHSVISPDGTTIAFTY--KGDIYTVPVAGGRAM----QITTNPAYDTAPVWSPDSKRI 104 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINI------------SASYSPDSSQIVFES 320 + + ++D+Y V RLT SA P + +VF S Sbjct: 105 AFASDRMGSLDVYIVAKDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPS 164 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------- 371 + Q+Y + G IS + +G ++ K E + Sbjct: 165 N-GQFNQVYRVSVEGGRPTMISSMP---MECISINKEGAMLYQDKKGYEDYWRKHHVSPI 220 Query: 372 --AIGVMKKDGSQE---RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 I + G + +L + P W+P G++ + +++G Sbjct: 221 ARDIWMYTP-GKEPQYRQLTTFGGEDREPVWAPDGKTFYYLSEENGSFN 268 Score = 83.1 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 108/398 (27%), Gaps = 136/398 (34%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 ++ + ++ K + + G +T P +SP+ +++A+A+ Sbjct: 55 SVISPDGTTIAFTYKGDIYTVPVAGGRAMQITT-NPAYDTAPVWSPDSKRIAFASDRMGS 113 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMIL---------------------APRFSSNGKR--- 271 L VY++ + P+R+ A F SNG+ Sbjct: 114 -LDVYIVA-KDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPSNGQFNQV 171 Query: 272 ALISVQKDEAMDIYSVDLQ---------------------------------------SN 292 +SV+ I S+ ++ Sbjct: 172 YRVSVEGGRPTMISSMPMECISINKEGAMLYQDKKGYEDYWRKHHVSPIARDIWMYTPGK 231 Query: 293 AT--ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------- 342 +LT + ++PD + S+ G +Y + +++ Sbjct: 232 EPQYRQLTTFGGEDREPVWAPDGKTFYYLSEENGSFNIYRRTPGDAKAVQLTHYTKNPVR 291 Query: 343 -------------QDKEASYFDP--------------------------------VWSPQ 357 D E P SP Sbjct: 292 YLSAATDGRLCYGFDGEIYTLLPGGEAQKVNISIVSDRNDKDIIRQIKSSGATEMAVSPD 351 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG---- 412 G +AF + V + + + + ++P GR+L+++ ++ G Sbjct: 352 GKEVAFVLRGD----VYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQL 407 Query: 413 ------DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 KL++ + E L N+ A + PQ+ Sbjct: 408 YTSTIVRKDEKLFTYATELKEERLTNSDAASFQPQYSP 445 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F+P++SP+ +++A+ ++ + D R K ++ ++ Sbjct: 431 LTNSDAASFQPQYSPDGKEIAFLENRSTIRVINLKTKDVRTVMDGKYQYSYSDGDQWFQW 490 Query: 266 SSNGKRAL---ISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K L I V D+ ++ LT + + + +A + +++ SD Sbjct: 491 SPDSKWILSDYIGVGGWNNKDVVLLNADGKGEMVNLTESGYNDGNAKWVLGGKAMIWTSD 550 Query: 322 REG 324 R G Sbjct: 551 RAG 553 >gi|270295783|ref|ZP_06201983.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273187|gb|EFA19049.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1097 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 111/303 (36%), Gaps = 42/303 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN + ++ + +RYL+ + D L + + Sbjct: 243 FYYLSEENGSFN-------IYRRTPGDAKAVQLTHYTKNPVRYLSAATDGRLC---YGFD 292 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + + + ++ R D+ R S +GK ++ D Sbjct: 293 GEIYTLLPGGEAQKVNISIVSDRNDKDIIRQIKSSGATEM-AVSPDGKEVAFVLRGD--- 348 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT + ++PD +V+ S+R G QLY D+K + Sbjct: 349 -VYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKLFT 407 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + +A+ F P +SP G IAF + I V+ R +++ Sbjct: 408 YATELKEERLTNSDAASFQPQYSPDGKEIAFLENRST---IRVINLKTKDVRTVMDGKYQ 464 Query: 393 QAPT-------WSPSGRSLIFSRKK---DGDTGSKLYSIDLNGRNE--TLINTPAYASDP 440 + + WSP + ++ G + ++ +G+ E L + + Sbjct: 465 YSYSDGDQWFQWSPDSKWIL--SDYIGVGGWNNKDVVLLNADGKGEMVNLTESGYNDGNA 522 Query: 441 QWV 443 +WV Sbjct: 523 KWV 525 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 34/244 (13%) Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF------SSNGKRALISVQKDEAM 282 + R+ + + A + F AP + S +G + + D Sbjct: 1 MRFFYSPKTRIIMKKLLLGIAAACLAGFTFAQDAPLWMRHSVISPDGTTIAFTYKGD--- 57 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 IY+V + ++T + + +SPDS +I F SDR G +Y++ +G + +R++ Sbjct: 58 -IYTVPVAGGRAMQITTNPAYDTAPVWSPDSKRIAFASDRMGSLDVYIVAKDGGEPRRLT 116 Query: 343 -----------QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN 391 D F P + + F +G+ + + +G + ++ Sbjct: 117 THSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPS-NGQFNQVYRVSVEGGRPTMISSMP- 174 Query: 392 LQAPTWSPSGRSLI--------FSRKKD-GDTGSKLYSIDLNGRNE--TLINTPAYASDP 440 ++ + + G L + RK ++ + L +P Sbjct: 175 MECISINKEGAMLYQDKKGYEDYWRKHHVSPIARDIWMYTPGKEPQYRQLTTFGGEDREP 234 Query: 441 QWVG 444 W Sbjct: 235 VWAP 238 Score = 100 bits (249), Expect = 6e-19, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 37/229 (16%) Query: 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA 272 + SP+ +A+ DI V + R +I + AP +S + KR Sbjct: 37 WMRHSVISPDGTTIAFTY--KGDIYTVPVAGGRAM----QITTNPAYDTAPVWSPDSKRI 90 Query: 273 LISVQKDEAMDIYSVDLQSNATERLTNTLFINI------------SASYSPDSSQIVFES 320 + + ++D+Y V RLT SA P + +VF S Sbjct: 91 AFASDRMGSLDVYIVAKDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPS 150 Query: 321 DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF--------- 371 + Q+Y + G IS + +G ++ K E + Sbjct: 151 N-GQFNQVYRVSVEGGRPTMISSMP---MECISINKEGAMLYQDKKGYEDYWRKHHVSPI 206 Query: 372 --AIGVMKKDGSQE---RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 I + G + +L + P W+P G++ + +++G Sbjct: 207 ARDIWMYTP-GKEPQYRQLTTFGGEDREPVWAPDGKTFYYLSEENGSFN 254 Score = 83.1 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 108/398 (27%), Gaps = 136/398 (34%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 ++ + ++ K + + G +T P +SP+ +++A+A+ Sbjct: 41 SVISPDGTTIAFTYKGDIYTVPVAGGRAMQITT-NPAYDTAPVWSPDSKRIAFASDRMGS 99 Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMIL---------------------APRFSSNGKR--- 271 L VY++ + P+R+ A F SNG+ Sbjct: 100 -LDVYIVA-KDGGEPRRLTTHSGSETPLAFTDAGHVLFSAGIMPSAEAVVFPSNGQFNQV 157 Query: 272 ALISVQKDEAMDIYSVDLQ---------------------------------------SN 292 +SV+ I S+ ++ Sbjct: 158 YRVSVEGGRPTMISSMPMECISINKEGAMLYQDKKGYEDYWRKHHVSPIARDIWMYTPGK 217 Query: 293 AT--ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS-------- 342 +LT + ++PD + S+ G +Y + +++ Sbjct: 218 EPQYRQLTTFGGEDREPVWAPDGKTFYYLSEENGSFNIYRRTPGDAKAVQLTHYTKNPVR 277 Query: 343 -------------QDKEASYFDP--------------------------------VWSPQ 357 D E P SP Sbjct: 278 YLSAATDGRLCYGFDGEIYTLLPGGEAQKVNISIVSDRNDKDIIRQIKSSGATEMAVSPD 337 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG---- 412 G +AF + V + + + + ++P GR+L+++ ++ G Sbjct: 338 GKEVAFVLRGD----VYVTSVEYKTTKQITNTPCQERTVDFAPDGRTLVYASERGGLWQL 393 Query: 413 ------DTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 KL++ + E L N+ A + PQ+ Sbjct: 394 YTSTIVRKDEKLFTYATELKEERLTNSDAASFQPQYSP 431 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F+P++SP+ +++A+ ++ + D R K ++ ++ Sbjct: 417 LTNSDAASFQPQYSPDGKEIAFLENRSTIRVINLKTKDVRTVMDGKYQYSYSDGDQWFQW 476 Query: 266 SSNGKRAL---ISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K L I V D+ ++ LT + + + +A + +++ SD Sbjct: 477 SPDSKWILSDYIGVGGWNNKDVVLLNADGKGEMVNLTESGYNDGNAKWVLGGKAMIWTSD 536 Query: 322 REG 324 R G Sbjct: 537 RAG 539 >gi|262197007|ref|YP_003268216.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] gi|262080354|gb|ACY16323.1| serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] Length = 1617 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 105/298 (35%), Gaps = 39/298 (13%) Query: 115 RVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFN 174 RV D+ R+WD+ ++ + + H D ++ +G+ Sbjct: 1282 RVASSAWDQ---SVRVWDLAGQRPPVVLR-----------GHE--DAVFSVQFSAEGE-- 1323 Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR-FSPNQQKVAYATYDD 233 +G + + DGA R R L SP+ ++V D Sbjct: 1324 ------RLVTAAGDSSARIWRLTDDGAGGRIERVLRHPTLVSSADISPDGRRVVTGATDH 1377 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 V + D P + R + + RFS +G+R ++S D ++S D Sbjct: 1378 ----LVRIWDLDSGGPPLVLAGHRDRVASVRFSPDGER-VVSSALDNTARVWSAD-GGGE 1431 Query: 294 TERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPV 353 T SAS+SPD ++V S + + ++GS + R+ + Sbjct: 1432 PLVFTEHDAWVWSASFSPDGERVVTASS---DHSVRIWNADGSGETRVLSGHDEVVSWAE 1488 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA--PTWSPSGRSLIFSRK 409 +SP GD + + + DGS+ +++ L +SP G ++ + Sbjct: 1489 FSPDGDRVVSASKDKT---LRIWPLDGSEPPVVLTGHALWVNTARFSPDGGRVVTASD 1543 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 96/266 (36%), Gaps = 18/266 (6%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V+S NS + + ++ FSP+ ++VA + +D V + Sbjct: 1240 RVLSASWDNSARIWSSEASDEPRRLEGHSMAPTMASFSPDGRRVASSAWDQ----SVRVW 1295 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV--DLQSNATERLTNT 300 D R P + + + +FS+ G+R + + D + I+ + D ER+ Sbjct: 1296 DLAGQRPPVVLRGHEDAVFSVQFSAEGERLV-TAAGDSSARIWRLTDDGAGGRIERVLRH 1354 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 + SA SPD ++V + + + + +SP G+ Sbjct: 1355 PTLVSSADISPDGRRVV---TGATDHLVRIWDLDSGGPPLVLAGHRDRVASVRFSPDGER 1411 Query: 361 IAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 + + V DG E L+ D+ + + ++SP G ++ + D ++ Sbjct: 1412 VVSSALDNTA---RVWSADGGGEPLVFTEHDAWVWSASFSPDGERVVTASS---DHSVRI 1465 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 ++ D +G L S ++ Sbjct: 1466 WNADGSGETRVLSGHDEVVSWAEFSP 1491 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 100/266 (37%), Gaps = 16/266 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 V S S+ V D G + + +F +FS +++ A D + L Sbjct: 1281 RRVASSAWDQSVRVWDLAGQRPPVVLRGHEDAVFSVQFSAEGERLVTAAGDSSARIWR-L 1339 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 D +R+ +++ + S +G+R +++ D + I+ +D L Sbjct: 1340 TDDGAGGRIERVLRHPTLVSSADISPDGRR-VVTGATDHLVRIWDLD-SGGPPLVLAGHR 1397 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 S +SPD ++V V ++G + + + +A + +SP G+ + Sbjct: 1398 DRVASVRFSPDGERVV---SSALDNTARVWSADGGGEPLVFTEHDAWVWSASFSPDGERV 1454 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW---SPSGRSLIFSRKKDGDTGSKL 418 ++ + DGS E ++ + + +W SP G ++ + K D ++ Sbjct: 1455 VTASSD---HSVRIWNADGSGETRVL-SGHDEVVSWAEFSPDGDRVVSASK---DKTLRI 1507 Query: 419 YSIDLNGRNETLINTPAYASDPQWVG 444 + +D + L + + ++ Sbjct: 1508 WPLDGSEPPVVLTGHALWVNTARFSP 1533 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 121/316 (38%), Gaps = 30/316 (9%) Query: 147 SPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE--SVVSGIIKNSLCVMDRDGANIR 204 P + ++ + + + E GD F + V S ++ + DG+ Sbjct: 933 PPGAVQEARRLLYAKLAHVVFTEHGDGVQSAAFSPDGERVASASWDGTVRIWPADGSGAA 992 Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSM---IL 261 + + ++ F + Q++ A+ D + DTR + + R + Sbjct: 993 LVLRGHEAEVYGAEFRADGQRLVSASGDH----TARIWDTRPGSQGQVLRVLRGHREAVW 1048 Query: 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD 321 + FS +GKR +++ D + I+ + A L SA++SPD ++V S Sbjct: 1049 SAAFSPDGKR-VVTASGDHTVRIWPL-AGDAAPAVLEGHRATVRSAAFSPDGGRVVSAS- 1105 Query: 322 REGKEQLYVMQSNGSD------------QKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 +G +++ + ++ S R+ + A + +SP G + + Sbjct: 1106 ADGTVRVWALGADASPDAAAGPGSAASRAVRVFETGPAPVWMARFSPDGTRVI-AALGDD 1164 Query: 370 KFAIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + G++ ++L +++ A +SP G ++ + GD +++++ + Sbjct: 1165 TARIWDL-ASGAEIQVLRGHTDMVHAAAFSPEGERVVTAS---GDNTVRIWTLASDAAPL 1220 Query: 429 TLINTPAYASDPQWVG 444 L A +D ++ Sbjct: 1221 VLSGHGARIADARFSP 1236 Score = 36.9 bits (84), Expect = 6.3, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + VVS +L + DG+ + + RFSP+ +V A+ D Sbjct: 1494 DRVVSASKDKTLRIWPLDGSEPPVVLTGHALWVNTARFSPDGGRVVTASDDK 1545 >gi|85708707|ref|ZP_01039773.1| hypothetical protein NAP1_05690 [Erythrobacter sp. NAP1] gi|85690241|gb|EAQ30244.1| hypothetical protein NAP1_05690 [Erythrobacter sp. NAP1] Length = 678 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 96/286 (33%), Gaps = 59/286 (20%) Query: 216 EPRFSPNQQKVAYAT-----YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGK 270 +P+ SP+ + Y D V+++D + + +PR+S +G Sbjct: 37 DPQVSPDGSQAIYVRRFNDIMTDRTRSHVWIVDLDGSAHEPLLADG-GSYRSPRWSPDGS 95 Query: 271 RALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE----------- 319 R ++ +Y L S + + + S ++SPD + I F Sbjct: 96 RIAYMTSENGRTALYVHYLASGRSALIGSFERGPSSITWSPDGTMIAFAMSVEAKSDKLL 155 Query: 320 ---SDREGKE--------------------------QLYVMQSNGSDQKRISQDKEASYF 350 S EG ++V+ + G Q++++ Sbjct: 156 SPPSRPEGANWAKAPVVIDRARYRTNGAGFVELAYDHIFVIPAEGGTQRQLTSGDFNHGG 215 Query: 351 DPVWSPQGDLIAFTKFSGEKFAI-------GVMKKDGSQERLLVE-DSNLQAPTWSPSGR 402 ++P G+ I F+ E + + + + L E +P SP G Sbjct: 216 PLSFTPDGEQIIFSANRNEGWELQSREADVFSVSVSSGELTQLTEMPGTETSPQVSPDGG 275 Query: 403 SLIFSRK---KDGDTGSKLYSIDLNGRNETLIN--TPAYASDPQWV 443 S+ F ++ + ++ ++++G N + A D QW+ Sbjct: 276 SIAFLGTGNAREPFLPTNVFVMNVDGGNARNLTEGLDRRAGDVQWL 321 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 90/301 (29%), Gaps = 84/301 (27%) Query: 186 SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR 245 + DG+ I Y+T S N + Y Y Sbjct: 80 ADGGSYRSPRWSPDGSRIAYMT------------SENGRTALYVHY-------------L 114 Query: 246 IDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD---------------------- 283 IG+F + +S +G ++ + D Sbjct: 115 ASGRSALIGSFERGPSSITWSPDGTMIAFAMSVEAKSDKLLSPPSRPEGANWAKAPVVID 174 Query: 284 ------------------IYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDREG 324 I+ + + +LT+ F + S++PD QI+F ++R Sbjct: 175 RARYRTNGAGFVELAYDHIFVIPAEGGTQRQLTSGDFNHGGPLSFTPDGEQIIFSANRNE 234 Query: 325 KEQL-------YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK-----FA 372 +L + + + + +++ + + P SP G IAF + Sbjct: 235 GWELQSREADVFSVSVSSGELTQLT-EMPGTETSPQVSPDGGSIAFLGTGNAREPFLPTN 293 Query: 373 IGVMKKDGSQERLLVE--DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 + VM DG R L E D W S + F+ + G+ + +D G T Sbjct: 294 VFVMNVDGGNARNLTEGLDRRAGDVQWL-SSSEIAFTFQNRGEN--NIGVVDTRGNRRTA 350 Query: 431 I 431 + Sbjct: 351 V 351 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 57/261 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE 234 SRI +++ S + +L V + L S ++ +SP+ +A+A + Sbjct: 95 SRIAYMT----SENGRTALYV-HYLASGRSALIGSFERGPSSITWSPDGTMIAFAMSVEA 149 Query: 235 D--------------------------------------ILRVYLMDTRIDRAPKRIGNF 256 + +++ + Sbjct: 150 KSDKLLSPPSRPEGANWAKAPVVIDRARYRTNGAGFVELAYDHIFVIPAEGGTQRQLTSG 209 Query: 257 RSMILAP-RFSSNGKRALISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISAS 308 P F+ +G++ + S ++E D++SV + S +LT S Sbjct: 210 DFNHGGPLSFTPDGEQIIFSANRNEGWELQSREADVFSVSVSSGELTQLTEMPGTETSPQ 269 Query: 309 YSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD I F +E ++VM +G + + +++ + D W + IAF Sbjct: 270 VSPDGGSIAFLGTGNAREPFLPTNVFVMNVDGGNARNLTEGLDRRAGDVQWLSSSE-IAF 328 Query: 364 TKFSGEKFAIGVMKKDGSQER 384 T + + IGV+ G++ Sbjct: 329 TFQNRGENNIGVVDTRGNRRT 349 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 14/124 (11%) Query: 305 ISASYSPDSSQIVFES-------DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQ 357 SPD SQ ++ DR + ++++ +GS + + D SY P WSP Sbjct: 36 DDPQVSPDGSQAIYVRRFNDIMTDRT-RSHVWIVDLDGSAHEPLLADG-GSYRSPRWSPD 93 Query: 358 GDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT---WSPSGRSLIFSRKKDGDT 414 G IA+ + A+ V + L+ S + P+ WSP G + F+ + + Sbjct: 94 GSRIAYMTSENGRTALYVHYLASGRSALI--GSFERGPSSITWSPDGTMIAFAMSVEAKS 151 Query: 415 GSKL 418 L Sbjct: 152 DKLL 155 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 10/173 (5%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRV-----YLMDTRID 247 + V+ +G R LT F+P+ +++ ++ +E + Sbjct: 193 IFVIPAEGGTQRQLTSGDFNHGGPLSFTPDGEQIIFSANRNEGWELQSREADVFSVSVSS 252 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA-----MDIYSVDLQSNATERLTNTLF 302 ++ +P+ S +G + +++ +++ LT L Sbjct: 253 GELTQLTEMPGTETSPQVSPDGGSIAFLGTGNAREPFLPTNVFVMNVDGGNARNLTEGLD 312 Query: 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS 355 SS+I F G+ + V+ + G+ + + + P S Sbjct: 313 RRAGDVQWLSSSEIAFTFQNRGENNIGVVDTRGNRRTAVEGIGGTTIGRPYVS 365 Score = 42.3 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 393 QAPTWSPSGRSLIFSRKKD----GDTGSKLYSIDLNGR-NETLINTPAYASDPQWVG 444 P SP G I+ R+ + T S ++ +DL+G +E L+ P+W Sbjct: 36 DDPQVSPDGSQAIYVRRFNDIMTDRTRSHVWIVDLDGSAHEPLLADGGSYRSPRWSP 92 >gi|255746124|ref|ZP_05420071.1| protease-related protein [Vibrio cholera CIRS 101] gi|262158611|ref|ZP_06029725.1| protease-related protein [Vibrio cholerae INDRE 91/1] gi|262168976|ref|ZP_06036670.1| protease-related protein [Vibrio cholerae RC27] gi|255735878|gb|EET91276.1| protease-related protein [Vibrio cholera CIRS 101] gi|262022675|gb|EEY41382.1| protease-related protein [Vibrio cholerae RC27] gi|262029491|gb|EEY48141.1| protease-related protein [Vibrio cholerae INDRE 91/1] Length = 1039 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 78/239 (32%), Gaps = 37/239 (15%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 SP+ QK+A+ + + P +S + + + + Sbjct: 2 SPDGQKIAFTYAGQ------IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 55 Query: 280 EAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE------------- 326 D++ + +Q + RLT +I ++S D Q+ F S R G + Sbjct: 56 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMA 115 Query: 327 QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF------------SGEKFAIG 374 QLY + + G ++R+ + D SP I +T S I Sbjct: 116 QLYSVPAAGGREQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIW 172 Query: 375 -VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLIN 432 G ++ + P WS G S+ + ++ G ++ +G I Sbjct: 173 QWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSF--NVWQQRFDGSEPVQIT 229 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 30/203 (14%) Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGK 325 S +G++ + A I+ V Q LT + + + +SPDS I F +DR G Sbjct: 2 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 57 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-------------A 372 ++++ G + +R++ A +S G + F+ Sbjct: 58 GDVFILSIQGGESRRLTYHG-AKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQ 116 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD----------GDTGSKLYSID 422 + + G +E+ ++ + SPS ++++ + D ++ Sbjct: 117 LYSVPAAGGREQRVL-PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWS 175 Query: 423 -LNGRNETLINTPAYASDPQWVG 444 L G++ + +P W Sbjct: 176 PLTGKHTQITTFRGEDRNPVWSA 198 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 98/331 (29%), Gaps = 89/331 (26%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED------------ILRVYLMDTRID 247 G + R I + FS + Q++ +++ D + ++Y + Sbjct: 68 GESRRLTYHGAKDIPY--AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGG 125 Query: 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQK------------DEAMDIYSVDLQSNATE 295 R + + I S + L + Q D DI+ + Sbjct: 126 REQRVL---PIAISDLAISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHT 182 Query: 296 RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ------------ 343 ++T + + +S D S + + S++ G ++ + +GS+ +I+ Sbjct: 183 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSAS 242 Query: 344 ---DKEASYFDPVW--------------------SPQGDLIAFTKFSGEKF--------- 371 D + +W P G + Sbjct: 243 LQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEV 302 Query: 372 ------AIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDT---------G 415 + V+ + + + + ++S G LI++ +++G G Sbjct: 303 AIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDG 362 Query: 416 SKLYSIDLNGRNETLINTPAYASDPQWVGFM 446 K +S L+ E ++ T P + + Sbjct: 363 GKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 393 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKD 279 +PN +VA D VY++ +RI + FSS+G R + + +++ Sbjct: 296 APNAAEVAIVARGD-----VYVVSLLSG-LTQRITDTPEAERDVSFSSDGYRLIYASERE 349 Query: 280 EAMDIYSVDLQSNA-----------TERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 + ++Y + LT + I YSP+ +IV+ RE + L Sbjct: 350 GSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV-IQPLYSPNLKRIVY---RENRNTL 405 Query: 329 YVMQSN-GSDQKRISQDKEASYFDPV----WSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 V + SYFD WSP + I + I ++K DGS+ Sbjct: 406 KVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEA 465 Query: 384 RL-LVEDSNLQ-APTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNG 425 + L + + AP +S G+ + + G D + D+ G Sbjct: 466 PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYG 511 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 41/286 (14%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQ-------KVAYATYDDEDILRVYLMDTR 245 + DG+ +T + + S ++ + +V + R Sbjct: 215 VWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVSIRR 274 Query: 246 IDRA-PKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFIN 304 + NF + N I + D +Y V L S T+R+T+T Sbjct: 275 SAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGLTQRITDTPEAE 330 Query: 305 ISASYSPDSSQIVFESDREGKEQLYVMQSNGS-----------DQKRISQDKEASYFDPV 353 S+S D ++++ S+REG LY N ++ ++ +++ P+ Sbjct: 331 RDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQD--VIQPL 388 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT-------WSPSGRSLIF 406 +SP I + + + V + + L++ L + WSP ++ Sbjct: 389 YSPNLKRIVYRENRNT---LKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVT 445 Query: 407 SRKKDGDTGSKLYSIDLNGRNETLINT------PAYASDPQWVGFM 446 + + +L D + L + P +++D QWV ++ Sbjct: 446 RDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWL 491 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 218 RFSPNQQKVAYATYDDE--DILRVYLMDTR------IDRAPKRIGNFRSMILAPRFSSNG 269 FS + ++ YA+ + ++ + Y+ D +D + + ++ P +S N Sbjct: 334 SFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 393 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 KR + ++ + D++ + T L + + ++S +SPDS IV DR Sbjct: 394 KRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYIV-TRDRA 449 Query: 324 -GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVM 376 + +++ +GS+ S F P +S G + + + I M Sbjct: 450 MSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 503 >gi|288928608|ref|ZP_06422454.1| MdsD protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329592|gb|EFC68177.1| MdsD protein [Prevotella sp. oral taxon 317 str. F0108] Length = 1077 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 38/303 (12%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D + ++ E G FN ++V +G + + + +R+LT + + L + Sbjct: 225 DTFYYLSEEDGTFN---VYVRNIDGTGKQQLTRHTTNP----VRFLTAANNGTLC---YG 274 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + + + L+V ++ +ID R F S +GK + D Sbjct: 275 YDGEIYTLKQGEQPQKLKVNIVTDKIDTDLDRQTLFTGATEI-ALSPDGKELAFVLHGD- 332 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 +Y T+++T+T ++PD IV+ S+R G Q+Y + +K Sbjct: 333 ---VYVTSNNYRTTKQITDTPEQEREIQFAPDGRSIVYASERGGLWQIYRTKLKLDKEKS 389 Query: 341 ISQDK----------EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + + + P +SP G IAF + + V+ R +++ Sbjct: 390 FAYATQLEEEQLVKSDRTSQQPRFSPDGKSIAFFEDRST---LRVLDIKSKAVRTVMDGK 446 Query: 391 NLQAPT-------WSPSGRSLIFSR-KKDGDTGSKLYSIDLNGRNETLINTPAYASD--P 440 + + + WSP R L+ S G + + +G+ E T + SD P Sbjct: 447 YVYSYSDGDISFAWSPDSRWLLSSYIGVGGWNSPDVALVKADGKGEIHNLTQSGYSDVGP 506 Query: 441 QWV 443 +WV Sbjct: 507 RWV 509 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 75/230 (32%), Gaps = 34/230 (14%) Query: 241 LMDTRIDRAPKRIGNFRSMILAPRF------SSNGKRALISVQKDEAMDIYSVDLQSNAT 294 +M T + + S +P + S +G + + D IY+V Sbjct: 1 MMKTTLTIVALALATSVSAQESPLWMRYCAISPDGSAVAFTYKGD----IYTVPTTGGTA 56 Query: 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ----------- 343 +LT + +SPDS Q+ F S+REG +YVMQ G +R++ Sbjct: 57 RQLTTNAAYDTHPVWSPDSKQLAFCSNREGSMDVYVMQREGGTPRRLTTNSNSETPIAFK 116 Query: 344 DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 D + P I F + + +GS+ L + + P+G Sbjct: 117 DNNTVLYTSSIIPSAKSIIFANR--MLPQVYEVGTNGSRPHLFSALPMMDI-SIRPNGDL 173 Query: 404 LI---------FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L + + ++ + G+ L N P W Sbjct: 174 LYHDQKGYEDPWRKHHRSPITRDIW-LRRGGKYTKLTNFNGEDRTPVWAA 222 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 44/394 (11%), Positives = 110/394 (27%), Gaps = 136/394 (34%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + S V+ K + + G R LT P +SP+ +++A+ + + + Sbjct: 31 ISPDGSAVAFTYKGDIYTVPTTGGTARQLTT-NAAYDTHPVWSPDSKQLAFCSNREGS-M 88 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFS------------SNGKRALIS---------- 275 VY+M R P+R+ + F + K + + Sbjct: 89 DVYVMQ-REGGTPRRLTTNSNSETPIAFKDNNTVLYTSSIIPSAKSIIFANRMLPQVYEV 147 Query: 276 ----VQKDEAMDIYSVDLQ-----------------------------------SNATER 296 + + +D+ + Sbjct: 148 GTNGSRPHLFSALPMMDISIRPNGDLLYHDQKGYEDPWRKHHRSPITRDIWLRRGGKYTK 207 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK----------- 345 LTN + + ++ + S+ +G +YV +G+ ++++++ Sbjct: 208 LTNFNGEDRTPVWAAQGDTFYYLSEEDGTFNVYVRNIDGTGKQQLTRHTTNPVRFLTAAN 267 Query: 346 ------------------------------------------EASYFDPVWSPQGDLIAF 363 + SP G +AF Sbjct: 268 NGTLCYGYDGEIYTLKQGEQPQKLKVNIVTDKIDTDLDRQTLFTGATEIALSPDGKELAF 327 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYS-- 420 + V + + + + + ++P GRS++++ ++ G ++Y Sbjct: 328 VLHGD----VYVTSNNYRTTKQITDTPEQEREIQFAPDGRSIVYASERGGLW--QIYRTK 381 Query: 421 IDLNGRN----------ETLINTPAYASDPQWVG 444 + L+ E L+ + + P++ Sbjct: 382 LKLDKEKSFAYATQLEEEQLVKSDRTSQQPRFSP 415 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 55/349 (15%), Positives = 127/349 (36%), Gaps = 66/349 (18%) Query: 69 VSKD--LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +++D L+R + K+TN + R W + G + E V Sbjct: 193 ITRDIWLRRGGKYT---------KLTNFNGEDRTPVWAAQGDTFY----YLSEEDGTFNV 239 Query: 127 EFRLWDVKDRKQIIGKK----FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 R D ++Q+ F + A+ + + +IY GE+ ++ V++ Sbjct: 240 YVRNIDGTGKQQLTRHTTNPVRFLTAANNGTLCYGYDGEIYTLKQGEQPQ-KLKVNIVTD 298 Query: 183 SVVSGIIKNSLCV------MDRDGANIRYLTPS-----------RDQILFEP------RF 219 + + + + +L + DG + ++ QI P +F Sbjct: 299 KIDTDLDRQTLFTGATEIALSPDGKELAFVLHGDVYVTSNNYRTTKQITDTPEQEREIQF 358 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRA----------PKRIGNFRSMILAPRFSSNG 269 +P+ + + YA+ + + ++Y ++D+ +++ PRFS +G Sbjct: 359 APDGRSIVYAS-ERGGLWQIYRTKLKLDKEKSFAYATQLEEEQLVKSDRTSQQPRFSPDG 417 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 K ++ + +D++S A + + ++ +IS ++SPDS ++ Sbjct: 418 KSIAFF---EDRSTLRVLDIKSKAVRTVMDGKYVYSYSDGDISFAWSPDSRWLLSSYIGV 474 Query: 324 GK---EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 G + +++++G + S P W G + F+ Sbjct: 475 GGWNSPDVALVKADGKGEIHNLTQSGYSDVGPRWVLGGKAMLFSSDRAG 523 >gi|126652129|ref|ZP_01724311.1| hypothetical protein BB14905_10675 [Bacillus sp. B14905] gi|126591037|gb|EAZ85148.1| hypothetical protein BB14905_10675 [Bacillus sp. B14905] Length = 701 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 26/256 (10%) Query: 212 QILFEPRFSPNQQKVAY--ATYDDEDILRVYLMDTRIDRAPKRI-GNFRSMILAPRFSSN 268 + P SP+ Q+V Y E+ +L + ++ +R+ + + + P +S + Sbjct: 14 EWPSNPVISPDGQQVVYERTIAVKENNYETHLYLSDVEGKTRRVLTSSGTRNVNPIWSPD 73 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIV------FESDR 322 GK + M + + L LT S ++P+ I S+ Sbjct: 74 GKTIAFISDRAYGMQAWLLSLDGGEARCLTKFRQGISSIVWAPNGKTIYGLVPVIVHSEL 133 Query: 323 EG---KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 E ++ +S + ++ +D Y + G K I + D Sbjct: 134 ETFHENATIHEAKSEKEQEDKLWRDGAKRYHHLYYKNDGTGF----HKPYKRQIVAIHID 189 Query: 380 GSQERLLVEDSN-LQAPTWSPSGRSLIFSRKKDGD---TGSKLYSIDLNGRNETLI---- 431 L+ + N + P SP G ++FS + + G K+Y + +G + L+ Sbjct: 190 TGTFVLITKGINEVHQPDVSPDGEYIVFSSNAENENFLFGGKVYRVSSSGGDAKLLYSDT 249 Query: 432 --NTPAYASDPQWVGF 445 ++P+Y+ D +W+ F Sbjct: 250 EASSPSYSPDGKWIAF 265 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 111/337 (32%), Gaps = 76/337 (22%) Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 D + + +V + L + D +G R + S P +SP+ + +A+ Sbjct: 21 ISPDGQQVVYERTIAVKENNYETHLYLSDVEGK-TRRVLTSSGTRNVNPIWSPDGKTIAF 79 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRA-----LIS-------- 275 + D ++ +L+ + + FR I + ++ NGK +I Sbjct: 80 IS-DRAYGMQAWLLSLD-GGEARCLTKFRQGISSIVWAPNGKTIYGLVPVIVHSELETFH 137 Query: 276 -----------------VQKDEA--------------------MDIYSVDLQSNATERLT 298 + +D A I ++ + + +T Sbjct: 138 ENATIHEAKSEKEQEDKLWRDGAKRYHHLYYKNDGTGFHKPYKRQIVAIHIDTGTFVLIT 197 Query: 299 NTLFINISASYSPDSSQIVFESDREG-----KEQLYVMQSNGSDQKRISQDKEASYFDPV 353 + SPD IVF S+ E ++Y + S+G D K + D EAS P Sbjct: 198 KGINEVHQPDVSPDGEYIVFSSNAENENFLFGGKVYRVSSSGGDAKLLYSDTEAS--SPS 255 Query: 354 WSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ----------------APTW 397 +SP G IAF E+ + V+ +G R L + P W Sbjct: 256 YSPDGKWIAFFGNHAEQKELLVIPSEGGDVRSLSKKYQDTLLDMTFTDMRNLRYALRPQW 315 Query: 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 S + R + +G +S D N + +I Sbjct: 316 SNNSRYIYALSTHEGRNEIVRFSNDKNDDHPVIIAGG 352 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 81/235 (34%), Gaps = 29/235 (12%) Query: 183 SVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED--ILRVY 240 + K + + D +T +++ +P SP+ + + +++ + + + Sbjct: 173 TGFHKPYKRQIVAIHIDTGTFVLITKGINEV-HQPDVSPDGEYIVFSSNAENENFLFGGK 231 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLT-- 298 + ++ + +P +S +GK E ++ + + L+ Sbjct: 232 VYRVSSSGGDAKLLYSDTEASSPSYSPDGKWIAFFGNHAEQKELLVIPSEGGDVRSLSKK 291 Query: 299 -------------NTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS-DQKRISQD 344 L + +S +S I S EG+ ++ ++ + D I Sbjct: 292 YQDTLLDMTFTDMRNLRYALRPQWSNNSRYIYALSTHEGRNEIVRFSNDKNDDHPVIIAG 351 Query: 345 KEASYFDPVWSPQGD---LIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT 396 + + F +S G+ +A++ + I ++ D + D N + PT Sbjct: 352 GDRTIF--HFSFDGEETISMAYSTVNHPG-RISAIRIDETN----TADCNYRYPT 399 >gi|168704723|ref|ZP_02737000.1| putative exported protease [Gemmata obscuriglobus UQM 2246] Length = 1080 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 38/243 (15%) Query: 221 PNQQKVA-YATYDDEDILRVYLMDTRI----DRAPKRIGNFRSMILAPRFSSNGKRALIS 275 P++ ++ + + I+ Y D +RI + + PRFS +G + Sbjct: 23 PDEARLLRFPAVHGDQIVFTYAGDLYTVPAAGGTARRITSHPGFEMFPRFSPDGSLVAFT 82 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTL-------FINISAS-----YSPDSSQIVFESDRE 323 Q D +++ V +RLT T + + ++PD ++F S Sbjct: 83 GQYDGNTEVFVVPAVGGEPKRLTYTATLGRDEVSDRMGPNNVVIGWTPDGKSVLFRSRMR 142 Query: 324 GKE----QLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------FSG 368 QL+ + G + + + +S G +A+ + G Sbjct: 143 SFNDFVGQLFTVPVEGGVPEELPLPRGGFA---SYSADGTKLAYNRIFREFRTWKRYRGG 199 Query: 369 EKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + + + L +D P + G + F +D + LYS+D + Sbjct: 200 MADDVWLYDFATKKTEQLTDDPGQDIFPMFI--GDKVYFISDRDKNMRYNLYSVDPATKK 257 Query: 428 ETL 430 Sbjct: 258 TER 260 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 30/201 (14%) Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 G + + + D +Y+V R+T+ + +SPD S + F +G ++ Sbjct: 36 GDQIVFTYAGD----LYTVPAAGGTARRITSHPGFEMFPRFSPDGSLVAFTGQYDGNTEV 91 Query: 329 YVMQSNGSDQKRISQDK-----------EASYFDPVWSPQGDLIAF----TKFSGEKFAI 373 +V+ + G + KR++ + W+P G + F F+ + Sbjct: 92 FVVPAVGGEPKRLTYTATLGRDEVSDRMGPNNVVIGWTPDGKSVLFRSRMRSFNDFVGQL 151 Query: 374 GVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSR---------KKDGDTGSKLYSID-L 423 + +G L A ++S G L ++R + G ++ D Sbjct: 152 FTVPVEGGVPEELPLPRGGFA-SYSADGTKLAYNRIFREFRTWKRYRGGMADDVWLYDFA 210 Query: 424 NGRNETLINTPAYASDPQWVG 444 + E L + P P ++G Sbjct: 211 TKKTEQLTDDPGQDIFPMFIG 231 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 120/353 (33%), Gaps = 88/353 (24%) Query: 134 KDRKQIIGKKFFSSPASWRKIAHTISDDIY---------QSITGEKG------DFNSRIL 178 D ++ + F +W++ ++DD++ + +T + G ++ Sbjct: 176 ADGTKLAYNRIFREFRTWKRYRGGMADDVWLYDFATKKTEQLTDDPGQDIFPMFIGDKVY 235 Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 F+S+ ++ +L +D T + + P S +Q E+ Sbjct: 236 FISDR--DKNMRYNLYSVDPATKKTERHTEFTEFDIKFPSASKDQ-------LVFENGGY 286 Query: 239 VYLMDTRIDRAPKR--------------IGNFRSMILAPRFSSNGKRALISVQKDEAMDI 284 +Y D + +A K + + + A S +GKRAL + + D + Sbjct: 287 IYKFDPKTAKAEKVTVRILEDRAGARGALTDVSKSVTAFEVSPDGKRALFAARGD----V 342 Query: 285 YSVDLQSNATERLTNTLFI-NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQ----- 338 ++V T LT T + + +SPD + F SD G+++++V ++GS Sbjct: 343 FTVPAGDGVTRNLTRTPGAHDRNPKWSPDGKSVAFVSDATGEDEIHVGPADGSAPAKPVT 402 Query: 339 --------------------------------------KRISQDKEASYFDPVWSPQGDL 360 + Q K D WSP Sbjct: 403 SAADTYKYEIQWSPDSKKILWGDKKLRLQFVDVETKKVTLVDQAKAWEVRDFTWSPDSKW 462 Query: 361 IAFTKFSGEKF-AIGVMKKDGSQERLLVEDSNL-QAPTWSPSGRSLIFSRKKD 411 +AF + + + + + ++ + + PT+S G+ L F +D Sbjct: 463 VAFGRQEVDTMPKVYLYSLETTKTTAVTDGWYASNTPTFSADGKYLFFVSARD 515 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 107/294 (36%), Gaps = 45/294 (15%) Query: 179 FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILR 238 F + G + + + + D LT Q +F P F KV + + D+++ Sbjct: 190 FRTWKRYRGGMADDVWLYDFATKKTEQLTDDPGQDIF-PMF--IGDKVYFISDRDKNMRY 246 Query: 239 VYLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALISVQKDEAMDIYSVDLQSNATER- 296 + +R F + P S + + + + IY D ++ E+ Sbjct: 247 NLYSVDPATKKTERHTEFTEFDIKFPSASKD--QLVF----ENGGYIYKFDPKTAKAEKV 300 Query: 297 --------------LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 LT+ + SPD + +F + + ++ + + + ++ Sbjct: 301 TVRILEDRAGARGALTDVSKSVTAFEVSPDGKRALFAA----RGDVFTVPAGDGVTRNLT 356 Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE---DSNLQAPTWSP 399 + A +P WSP G +AF + + I V DGS V D+ WSP Sbjct: 357 RTPGAHDRNPKWSPDGKSVAFVSDATGEDEIHVGPADGSAPAKPVTSAADTYKYEIQWSP 416 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP--------AYASDPQWVGF 445 + +++ GD +L +D+ + TL++ ++ D +WV F Sbjct: 417 DSKKILW-----GDKKLRLQFVDVETKKVTLVDQAKAWEVRDFTWSPDSKWVAF 465 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 102/335 (30%), Gaps = 92/335 (27%) Query: 192 SLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 L + G R +T S PRFSP+ VA+ D + + + PK Sbjct: 46 DLYTVPAAGGTARRIT-SHPGFEMFPRFSPDGSLVAFTGQYDGNTEVFVV--PAVGGEPK 102 Query: 252 RIG------------NFRSMILAPRFSSNGKRALI------------------------- 274 R+ + ++ +GK L Sbjct: 103 RLTYTATLGRDEVSDRMGPNNVVIGWTPDGKSVLFRSRMRSFNDFVGQLFTVPVEGGVPE 162 Query: 275 ----------SVQKDE----------------------AMDIYSVDLQSNATERLTNTLF 302 S D A D++ D + TE+LT+ Sbjct: 163 ELPLPRGGFASYSADGTKLAYNRIFREFRTWKRYRGGMADDVWLYDFATKKTEQLTDDPG 222 Query: 303 INISASYSPDSSQIVFESDREGKEQ--LYVMQSNGSDQKRISQDKEASYFDPVWSPQ--- 357 +I + ++ F SDR+ + LY + +R ++ E P S Sbjct: 223 QDIFPMFI--GDKVYFISDRDKNMRYNLYSVDPATKKTERHTEFTEFDIKFPSASKDQLV 280 Query: 358 ---GDLIA-FTKFSGEKFAIGV-MKKDGSQERLLVEDSNLQAPTW--SPSGRSLIFSRKK 410 G I F + + + V + +D + R + D + + SP G+ +F+ + Sbjct: 281 FENGGYIYKFDPKTAKAEKVTVRILEDRAGARGALTDVSKSVTAFEVSPDGKRALFAARG 340 Query: 411 DGDTGSKLYSIDLNGRNETLINTPA-YASDPQWVG 444 D T +G L TP + +P+W Sbjct: 341 DVFTVPA-----GDGVTRNLTRTPGAHDRNPKWSP 370 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 94/260 (36%), Gaps = 16/260 (6%) Query: 184 VVSGIIKNSLCVMDRDG-ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM 242 V ++ + V DG A + +T + D +E ++SP+ +K+ + + LR+ + Sbjct: 378 VSDATGEDEIHVGPADGSAPAKPVTSAADTYKYEIQWSPDSKKILW----GDKKLRLQFV 433 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK-DEAMDIYSVDLQSNATERLTNTL 301 D + + +S + K Q+ D +Y L++ T +T+ Sbjct: 434 DVETKKVTLVDQAKAWEVRDFTWSPDSKWVAFGRQEVDTMPKVYLYSLETTKTTAVTDGW 493 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYV--MQSNGSDQKRISQDKEASYFDPVWSPQGD 359 + + + ++S D + F S R+ D +R+ A P+ D Sbjct: 494 YASNTPTFSADGKYLFFVSARDFNPVYSSTEWNHAYRDMQRVYFVALAKATPNPLKPKLD 553 Query: 360 ------LIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQAPTWSPSGRSLIFSRKKDG 412 K + + DG R++ + +G +L + R G Sbjct: 554 DEPAEPKKDDKKDEKKDAPAVKVDLDGLSGRIVALPGPAANYGSLHAAGNALYYQRSASG 613 Query: 413 DTGSKLYSIDLNGRNETLIN 432 G +LY DL R ET + Sbjct: 614 SPG-QLYVFDLGSRKETALG 632 >gi|242826188|ref|XP_002488590.1| WD repeat-containing protein, putative [Talaromyces stipitatus ATCC 10500] gi|218712408|gb|EED11834.1| WD repeat-containing protein, putative [Talaromyces stipitatus ATCC 10500] Length = 1515 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 114/343 (33%), Gaps = 40/343 (11%) Query: 115 RVIKEGKDRLRVEFRLWDVKDR---KQIIGKK-------------FFSSPASWR--KIAH 156 +V+ G R +LWD + + G +S +S R K+ Sbjct: 789 KVVASGSGR---TVKLWDPATGTLRQTLQGHSGSVHAVAFSPDGKLVASGSSDRTIKLWD 845 Query: 157 TISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 + + + Q++ G G + +V+ ++ + D +R ++ Sbjct: 846 SATGTLRQTLQGHSGSVYAVAFSPDGKLVASGSGRTVKLWDPATGTLRQTLEGHSGQVYA 905 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 FSP+ + VA + D V L ++ + + + A FS +GK S Sbjct: 906 VAFSPDGKLVASGSGDQ----MVKLWNSATGTLRQTLEGHSGWVNAVAFSPDGKLVA-SG 960 Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS 336 D+ + ++ D + + + ++SPD + S + + + S Sbjct: 961 SGDDTIKLW--DSATGTLRQTLEDSGWVYAVAFSPDGKLVASGSS---DDTIKLWDSATG 1015 Query: 337 DQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQA 394 ++ + + +SP G L+A + + R + + A Sbjct: 1016 TLRQTLEGHSFWVYAVAFSPDGKLVA---SGSGDQTVKLWDSATGTLRQTLQGHSGWVNA 1072 Query: 395 PTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 +SP G+ + GD KL+ G + + + Sbjct: 1073 VAFSPDGKLVA---SGSGDETIKLWD-SATGTLRQTLQGHSGS 1111 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 101/307 (32%), Gaps = 46/307 (14%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+++ G R +LWD + R+ S +Y G Sbjct: 871 GKLVASGSGR---TVKLWDPATG-------------TLRQTLEGHSGQVYAVAFSPDG-- 912 Query: 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDD 233 + V SG + + + +R + FSP+ + VA + DD Sbjct: 913 --------KLVASGSGDQMVKLWNSATGTLRQTLEGHSGWVNAVAFSPDGKLVASGSGDD 964 Query: 234 EDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA 293 + L D+ + + + + A FS +GK S D+ + ++ D + Sbjct: 965 ----TIKLWDSATGTLRQTLEDS-GWVYAVAFSPDGKLVA-SGSSDDTIKLW--DSATGT 1016 Query: 294 TER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDP 352 + L F + ++SPD + S G + + + S ++ Q Sbjct: 1017 LRQTLEGHSFWVYAVAFSPDGKLVASGS---GDQTVKLWDSATGTLRQTLQGHSGWVNAV 1073 Query: 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKK 410 +SP G L+A I + R ++ ++ A +SP G+ F Sbjct: 1074 AFSPDGKLVA---SGSGDETIKLWDSATGTLRQTLQGHSGSVYAVAFSPDGK---FLETN 1127 Query: 411 DGDTGSK 417 G + Sbjct: 1128 QGRFNIE 1134 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 121/353 (34%), Gaps = 43/353 (12%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDR---KQIIGKK---------------FFSSPASWRKIA 155 G+++ G V +LWD + + G S K+ Sbjct: 621 GKLVASGSGDQTV--KLWDSATGTLRQTLQGHSGWVNAVAFSPDGKLVASGSGDDTIKLW 678 Query: 156 HTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILF 215 + + + +++ G ++ +V+ ++ + D +R + Sbjct: 679 DSATGTLRRTLEGHSDSVDAVAFSPDSKLVASGSGRTVKLWDSATGTLRQTLQGHSGSVH 738 Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALIS 275 FSP+ + VA + D + L D+ +++ + + A FS + K +++ Sbjct: 739 AVAFSPDGKLVASGSSDR----TIKLWDSATGTLQQKLEGHSNSVDAVAFSPDSK--VVA 792 Query: 276 VQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVF-ESDREGKEQLYVMQS 333 + ++ D + + ++ A ++SPD + SDR + + S Sbjct: 793 SGSGRTVKLW--DPATGTLRQTLQGHSGSVHAVAFSPDGKLVASGSSDRT----IKLWDS 846 Query: 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SN 391 ++ Q S + +SP G L+A SG + + R +E Sbjct: 847 ATGTLRQTLQGHSGSVYAVAFSPDGKLVA----SGSGRTVKLWDPATGTLRQTLEGHSGQ 902 Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 + A +SP G+ + GD KL++ +TL + + + Sbjct: 903 VYAVAFSPDGKLVA---SGSGDQMVKLWNSATGTLRQTLEGHSGWVNAVAFSP 952 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 17/241 (7%) Query: 205 YLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPR 264 S + FSP+ + VA + D V L D+ + + + A Sbjct: 603 QTLESHSHQVRAVAFSPDGKLVASGSGDQ----TVKLWDSATGTLRQTLQGHSGWVNAVA 658 Query: 265 FSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISA-SYSPDSSQIVFESDRE 323 FS +GK S D+ + ++ D + R ++ A ++SPDS + S R Sbjct: 659 FSPDGKLVA-SGSGDDTIKLW--DSATGTLRRTLEGHSDSVDAVAFSPDSKLVASGSGRT 715 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 + + S ++ Q S +SP G L+A + S + Q+ Sbjct: 716 ----VKLWDSATGTLRQTLQGHSGSVHAVAFSPDGKLVA-SGSSDRTIKLWDSATGTLQQ 770 Query: 384 RLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 +L +++ A +SP + + KL+ +TL + Sbjct: 771 KLEGHSNSVDAVAFSPDSKVVA----SGSGRTVKLWDPATGTLRQTLQGHSGSVHAVAFS 826 Query: 444 G 444 Sbjct: 827 P 827 Score = 83.1 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 17/215 (7%) Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV 287 Y I ++ +++ + + + + A FS +GK S D+ + ++ Sbjct: 580 YINKIPSWIQKLPEVESAWSAMLQTLESHSHQVRAVAFSPDGKLVA-SGSGDQTVKLW-- 636 Query: 288 DLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 D + + L + ++SPD + S G + + + S +R + Sbjct: 637 DSATGTLRQTLQGHSGWVNAVAFSPDGKLVASGS---GDDTIKLWDSATGTLRRTLEGHS 693 Query: 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSL 404 S +SP L+A SG + + R + ++ A +SP G+ + Sbjct: 694 DSVDAVAFSPDSKLVA----SGSGRTVKLWDSATGTLRQTLQGHSGSVHAVAFSPDGKLV 749 Query: 405 IFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 D KL+ G + + + + D Sbjct: 750 A---SGSSDRTIKLWD-SATGTLQQKLEGHSNSVD 780 >gi|32472592|ref|NP_865586.1| TolB protein [precursor] [Rhodopirellula baltica SH 1] gi|32443829|emb|CAD73270.1| probable TolB protein [Precursor] [Rhodopirellula baltica SH 1] Length = 1181 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 105/282 (37%), Gaps = 37/282 (13%) Query: 185 VSGIIKNSLCVMDRDGANIRYLTPSRDQILF--EPRFSPNQQKVAYATYDDEDILRVYLM 242 S K L V+ DG ++R L + +L P +SP+ ++ Y + + Sbjct: 894 PSSDPKPVLSVVRIDGTDLRDLAEPNETLLHVGSPDWSPDGTQIVYDQQAGSTLTARLMR 953 Query: 243 DTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERL-TNTL 301 + P + P FS +GKR S + + +D + L ++ Sbjct: 954 VDKTGGDPVDL----GFGSMPTFSPDGKRIAFSAARQG---VGIMDADGSNRTILDSSGW 1006 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-----SYFDPVWSP 356 I +SP + + + S LYV N S +K + Q +A Y++ WSP Sbjct: 1007 GIQ----WSPIPNLLAYSS----GGSLYVWDLNTSSRKAVLQGPDAIRYSYIYWNMCWSP 1058 Query: 357 QGDLIAF--TKFSGEKFAIGVMKKDG-SQERLLVEDSNLQAP-TWSPSGRSLIFSRKKDG 412 G IA + + I V+ S+ +++ + L W+ ++F Sbjct: 1059 DGKRIALKGRRRDNSQDEIAVVTLSNPSRLQVIPTPAKLGGDLGWASDSLQILFPMLSAE 1118 Query: 413 DTGSKLYSIDLN--GRNETLINTPAY--------ASDPQWVG 444 ++L+ +D+ G + N P+ + D +W+ Sbjct: 1119 TRRTQLHCVDVTNPGTPKLWPNQPSDRQISGVSLSKDGKWLA 1160 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 336 SDQKRISQDKEASYFDPVW---SPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-- 390 + +S K W + + + + S K + V++ DG+ R L E + Sbjct: 862 GGIQLVSIAKGRGTTSAKWLNLTLRAKNLMVSPSSDPKPVLSVVRIDGTDLRDLAEPNET 921 Query: 391 --NLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI---NTPAYASDPQWVGF 445 ++ +P WSP G +++ ++ ++L +D G + + + P ++ D + + F Sbjct: 922 LLHVGSPDWSPDGTQIVYDQQAGSTLTARLMRVDKTGGDPVDLGFGSMPTFSPDGKRIAF 981 >gi|255011806|ref|ZP_05283932.1| putative exported peptidase [Bacteroides fragilis 3_1_12] gi|313149645|ref|ZP_07811838.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138412|gb|EFR55772.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1093 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 115/302 (38%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN ++ + + V +R+L+ + + L + + Sbjct: 231 FYYLSEENGSFN---IYQRIPGSNASKQ----VTHHTQHPVRFLSMASNGNLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + + V ++ R D+ R S +GK ++ D Sbjct: 281 GEIYTLTPGGKSQKVSVKILSDRNDKDLIRQIKTSGATEM-AVSPDGKEVAFILRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 337 -VYVTSVEYKTTKQITNTPCQERGIDFAPDGRSLVYASERGGLWQLYTSSIVRKDEKQFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + + F+P +SP G +AF + AI V+ + R +++ Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEVAFLENRT---AIRVINLKTKKVRTVMDAQYQ 452 Query: 393 QAPT-------WSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 + + WSP + ++ F G + ++ +G+ E T + SD + Sbjct: 453 YSYSDGDQWFEWSPDSKWILSEFI-GIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAK 511 Query: 442 WV 443 WV Sbjct: 512 WV 513 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D I++V + ++T + + +SPDS QI F SDR Sbjct: 30 AISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPVWSPDSKQIAFASDRM 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI----AFTKFSGEKF-------A 372 G ++++ G + +R++ S +S G L+ F Sbjct: 86 GSLDVFIVSKEGGEPRRLTT-FSGSETPVAFSDAGQLLFTADIMPSAEDAGFPSNGQFQQ 144 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL---------IFSRKKDGDTGSKLYSI-- 421 I + G + ++ ++ + + G L + + + ++ + Sbjct: 145 IYQIPVTGGRP-VMFSSMPMECISINKEGAILYQDKKGYEDYWRKHQKSPIARDIWMLQP 203 Query: 422 DLNGRNETLINTPAYASDPQWVG 444 R E +P W Sbjct: 204 GQTPRYEKQTTFIGEDREPVWAP 226 Score = 93.5 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 79/223 (35%), Gaps = 35/223 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V + +I + P +S + K+ + Sbjct: 30 AISPDGTTIAFTY--KGDIFTVPV----SGGKATQITTNPAFDTTPVWSPDSKQIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGK- 325 + ++D++ V + RLT ++S D+ Q++F +D G+ Sbjct: 84 RMGSLDVFIVSKEGGEPRRLTTFSGSETPVAFS-DAGQLLFTADIMPSAEDAGFPSNGQF 142 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----------AIG 374 +Q+Y + G S + +G ++ K E + I Sbjct: 143 QQIYQIPVTGGRPVMFSSMP---MECISINKEGAILYQDKKGYEDYWRKHQKSPIARDIW 199 Query: 375 VMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 +++ + E+ + P W+P G+S + +++G Sbjct: 200 MLQPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGSFN 242 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 88/226 (38%), Gaps = 22/226 (9%) Query: 228 YATYDDEDILRVYLMDTRIDRAPK--RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y + + + + + P+ + F P ++ +GK +++ + +IY Sbjct: 185 YWRKHQKSPIARDIWMLQPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGSFNIY 244 Query: 286 SVDLQSNATERLTNT---------LFINISASYSPDSSQIVFESDREGKEQLYVMQ--SN 334 SNA++++T+ + N + Y D ++ GK Q ++ S+ Sbjct: 245 QRIPGSNASKQVTHHTQHPVRFLSMASNGNLCYGFDGE--IYTLTPGGKSQKVSVKILSD 302 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQ 393 +D+ I Q K + + SP G +AF + V + + + + Sbjct: 303 RNDKDLIRQIKTSGATEMAVSPDGKEVAFILRGD----VYVTSVEYKTTKQITNTPCQER 358 Query: 394 APTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASD 439 ++P GRSL+++ ++ G +LY+ + ++E + Sbjct: 359 GIDFAPDGRSLVYASERGGLW--QLYTSSIVRKDEKQFTYATELKE 402 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 9/106 (8%) Query: 343 QDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSG 401 Q+ SP G IAFT I + G + ++ + P WSP Sbjct: 20 QEGPLWMRHCAISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPVWSPDS 75 Query: 402 RSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + + F+ + G ++ + G + T + + P V F D Sbjct: 76 KQIAFASDRMGS--LDVFIVSKEGGEPRRLTTFSGSETP--VAFSD 117 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 38/278 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + ++ K + + G +T P +SP+ +++A+A+ + Sbjct: 31 ISPDGTTIAFTYKGDIFTVPVSGGKATQITT-NPAFDTTPVWSPDSKQIAFASDRMGSLD 89 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV------------QKDEAMDIY 285 + ++ P+R+ F FS + + L + + IY Sbjct: 90 --VFIVSKEGGEPRRLTTFSGSETPVAFS-DAGQLLFTADIMPSAEDAGFPSNGQFQQIY 146 Query: 286 SVDLQSNATERLTNTL----FINISASYSPDSSQIV--FESDREGKE---QLYVMQSNGS 336 + + ++ IN + + + + ++++Q + Sbjct: 147 QIPVTGGRPVMFSSMPMECISINKEGAILYQDKKGYEDYWRKHQKSPIARDIWMLQPGQT 206 Query: 337 D--QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +K+ + E +PVW+P G + F I + + + + Q Sbjct: 207 PRYEKQTTFIGE--DREPVWAPDGKSFYYLSEENGSFNIYQRIPGSNASKQVTH--HTQH 262 Query: 395 PTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNGRNETL 430 P R L + + ++Y++ G+++ + Sbjct: 263 PV-----RFLSMASNGNLCYGFDGEIYTLTPGGKSQKV 295 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F P++SP+ ++VA+ ++ + R + ++ + Sbjct: 405 LTNSDIASFNPKYSPDGKEVAFLENRTAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEW 464 Query: 266 SSNGKRA---LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K I + DI ++ LT + + + +A + +V+ SD Sbjct: 465 SPDSKWILSEFIGIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSD 524 Query: 322 REG 324 R G Sbjct: 525 RAG 527 >gi|260911011|ref|ZP_05917647.1| tricorn family protease MdsD [Prevotella sp. oral taxon 472 str. F0295] gi|260634815|gb|EEX52869.1| tricorn family protease MdsD [Prevotella sp. oral taxon 472 str. F0295] Length = 1077 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 28/201 (13%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D IYSV +LT + +SPDS Q+ F S+RE Sbjct: 30 AISPDGSTVAFTYKGD----IYSVPATGGTARQLTTNAAHDTHPVWSPDSKQLAFCSNRE 85 Query: 324 GKEQLYVMQSNGSDQKRISQ-----------DKEASYFDPVWSPQGDLIAFTKFSGEKFA 372 G +YVMQ G +RI+ D + P I F Sbjct: 86 GSMDIYVMQREGGTPRRITTNSGNETPIAFKDNNTVLYTTSIMPTAQSIIFANR--MLPQ 143 Query: 373 IGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI---------FSRKKDGDTGSKLYSIDL 423 + + +GS+ L + + P+G L + + ++ + Sbjct: 144 VYEVGTNGSRPHLFSALPMMDI-SIRPNGDLLYHDQKGYEDPWRKHHRSPITRDIW-LRR 201 Query: 424 NGRNETLINTPAYASDPQWVG 444 G+ L N P W Sbjct: 202 AGKYTKLTNFNGEDRTPVWAA 222 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 113/303 (37%), Gaps = 38/303 (12%) Query: 161 DIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS 220 D + ++ E G FN +++ +G + + + +R+LT + D L + Sbjct: 225 DTFYYLSEEDGTFN---VYMRNIDGTGKQQLTRHTTNP----VRFLTAATDGTLC---YG 274 Query: 221 PNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE 280 + + L+V ++ +ID+ R F S +GK + D Sbjct: 275 YDGEIYTLKQGSQPQKLKVSIVTDKIDKDLDRQTLFTGATEI-SLSPDGKELAFVLHGD- 332 Query: 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 +Y + T+++T+T ++PD IV+ S+R G Q+Y + +K Sbjct: 333 ---VYVTSIDYRTTKQITDTPEQEREIQFAPDGRSIVYASERGGLWQIYRTKLKLDKEKS 389 Query: 341 ISQDK----------EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS 390 + + + P +SP G IAF + + V+ R +++ Sbjct: 390 FAYATQLEEEQLVKSDRTSQQPRFSPDGKSIAFFEDRST---LRVLDIKSKAVRTVMDGK 446 Query: 391 NLQAP-------TWSPSGRSLIFSR-KKDGDTGSKLYSIDLNGRNETLINTPAYASD--P 440 + + WSP R L+ S G + + +G+ E T + SD Sbjct: 447 YVYSYADGDIGFAWSPDSRWLLSSYIGVGGWNSPDIALVKADGKGEIHNLTQSGYSDAGG 506 Query: 441 QWV 443 +WV Sbjct: 507 RWV 509 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 35/234 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ VA+ DI V +++ + P +S + K+ Sbjct: 30 AISPDGSTVAFTY--KGDIYSV----PATGGTARQLTTNAAHDTHPVWSPDSKQLAFCSN 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASY------------SPDSSQIVFESDREGK 325 ++ +MDIY + + R+T ++ P + I+F + Sbjct: 84 REGSMDIYVMQREGGTPRRITTNSGNETPIAFKDNNTVLYTTSIMPTAQSIIFANRM--L 141 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF-----------TKFSGEKFAIG 374 Q+Y + +NGS S D P GDL+ S I Sbjct: 142 PQVYEVGTNGSRPHLFSALP---MMDISIRPNGDLLYHDQKGYEDPWRKHHRSPITRDIW 198 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 + ++ G +L + + P W+ G + + ++DG + +ID G+ + Sbjct: 199 L-RRAGKYTKLTNFNGEDRTPVWAAQGDTFYYLSEEDGTFNVYMRNIDGTGKQQ 251 Score = 80.4 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 43/394 (10%), Positives = 110/394 (27%), Gaps = 136/394 (34%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + S V+ K + + G R LT + P +SP+ +++A+ + + + Sbjct: 31 ISPDGSTVAFTYKGDIYSVPATGGTARQLTTNAAH-DTHPVWSPDSKQLAFCSNREGS-M 88 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRF------------SSNGKRALIS---------- 275 +Y+M R P+RI F + + + Sbjct: 89 DIYVMQ-REGGTPRRITTNSGNETPIAFKDNNTVLYTTSIMPTAQSIIFANRMLPQVYEV 147 Query: 276 ----VQKDEAMDIYSVDLQ-----------------------------------SNATER 296 + + +D+ + + Sbjct: 148 GTNGSRPHLFSALPMMDISIRPNGDLLYHDQKGYEDPWRKHHRSPITRDIWLRRAGKYTK 207 Query: 297 LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK----------- 345 LTN + + ++ + S+ +G +Y+ +G+ ++++++ Sbjct: 208 LTNFNGEDRTPVWAAQGDTFYYLSEEDGTFNVYMRNIDGTGKQQLTRHTTNPVRFLTAAT 267 Query: 346 ------------------------------------------EASYFDPVWSPQGDLIAF 363 + SP G +AF Sbjct: 268 DGTLCYGYDGEIYTLKQGSQPQKLKVSIVTDKIDKDLDRQTLFTGATEISLSPDGKELAF 327 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQ-APTWSPSGRSLIFSRKKDGDTGSKLYS-- 420 + V D + + + + ++P GRS++++ ++ G ++Y Sbjct: 328 VLHGD----VYVTSIDYRTTKQITDTPEQEREIQFAPDGRSIVYASERGGLW--QIYRTK 381 Query: 421 IDLNGRN----------ETLINTPAYASDPQWVG 444 + L+ E L+ + + P++ Sbjct: 382 LKLDKEKSFAYATQLEEEQLVKSDRTSQQPRFSP 415 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 51/349 (14%), Positives = 123/349 (35%), Gaps = 66/349 (18%) Query: 69 VSKD--LQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 +++D L+R+ + K+TN + R W + G + E V Sbjct: 193 ITRDIWLRRAGKYT---------KLTNFNGEDRTPVWAAQGDTFY----YLSEEDGTFNV 239 Query: 127 EFRLWDVKDRKQIIGKK----FFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSE 182 R D ++Q+ F + A+ + + +IY ++ ++ V++ Sbjct: 240 YMRNIDGTGKQQLTRHTTNPVRFLTAATDGTLCYGYDGEIY-TLKQGSQPQKLKVSIVTD 298 Query: 183 SVVSGIIKNSLCV------MDRDGANIRYLTPS-----------RDQILFEP------RF 219 + + + +L + DG + ++ QI P +F Sbjct: 299 KIDKDLDRQTLFTGATEISLSPDGKELAFVLHGDVYVTSIDYRTTKQITDTPEQEREIQF 358 Query: 220 SPNQQKVAYATYDDEDILRVYLMDTRIDRA----------PKRIGNFRSMILAPRFSSNG 269 +P+ + + YA+ + + ++Y ++D+ +++ PRFS +G Sbjct: 359 APDGRSIVYAS-ERGGLWQIYRTKLKLDKEKSFAYATQLEEEQLVKSDRTSQQPRFSPDG 417 Query: 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFI------NISASYSPDSSQIVFESDRE 323 K ++ + +D++S A + + ++ +I ++SPDS ++ Sbjct: 418 KSIAFF---EDRSTLRVLDIKSKAVRTVMDGKYVYSYADGDIGFAWSPDSRWLLSSYIGV 474 Query: 324 GK---EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 G + +++++G + S W G + F Sbjct: 475 GGWNSPDIALVKADGKGEIHNLTQSGYSDAGGRWVLGGKAMLFVSDRAG 523 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 9/99 (9%) Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSR 408 SP G +AFT I + G R L + ++ P WSP + L F Sbjct: 27 RHCAISPDGSTVAFTYKGD----IYSVPATGGTARQLTTNAAHDTHPVWSPDSKQLAFCS 82 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 ++G +Y + G I T + P + F D Sbjct: 83 NREGSM--DIYVMQREGGTPRRITTNSGNETP--IAFKD 117 Score = 43.9 bits (102), Expect = 0.062, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%) Query: 385 LLVEDSNLQAPTW------SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP-AYA 437 L S + P W SP G ++ F+ K +YS+ G + T A+ Sbjct: 13 LATSVSAQENPLWMRHCAISPDGSTVAFTYK------GDIYSVPATGGTARQLTTNAAHD 66 Query: 438 SDPQWVG 444 + P W Sbjct: 67 THPVWSP 73 >gi|265767748|ref|ZP_06095280.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263252420|gb|EEZ23948.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1095 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 115/302 (38%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN ++ + V +R+L+ + + L + + Sbjct: 231 FYYLSEENGTFN---VYRRTPGSDTSKQ----VTHHKQHPVRFLSMASNGNLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + A + V ++ R D+ R S +GK ++ D Sbjct: 281 GEIYTLAPGGKPQKVSVKILSDRNDKELIRQIKTSGATEM-AVSPDGKEVAFILRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 337 -VYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + + F+P +SP G IAF + AI V+ + R +++ Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEIAFLENRT---AIRVINLKTKKVRTVMDAQYQ 452 Query: 393 QAPT-------WSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 + + WSP + ++ F G + ++ +G+ E T + SD + Sbjct: 453 YSYSDGDQWFEWSPDSKWILSEFI-GIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAK 511 Query: 442 WV 443 WV Sbjct: 512 WV 513 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D I++V + ++T + + +SPDS QI F SDR Sbjct: 30 AISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRM 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKF- 371 G ++++ +G + +R++ ++ G I FT S +F Sbjct: 86 GSMDVFIVSKDGGEPRRLTT-FSGGETPVAFTDAG-HILFTADIMPSTEDAGFPSNGQFQ 143 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL---------IFSRKKDGDTGSKLYSID 422 I + G + ++ ++ + + G L + + + ++ + Sbjct: 144 QIYQIPVSGGRP-VMFSSMPMECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIWMLR 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 R E +P W Sbjct: 203 PGQTPRYEKQTTFIGEDREPVWAP 226 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 35/223 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V + +I + P +S + K+ + Sbjct: 30 AISPDGTTIAFTY--KGDIFTVPV----SGGKATQITTNPAFDTTPIWSPDSKQIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGK- 325 + +MD++ V RLT +++ D+ I+F +D G+ Sbjct: 84 RMGSMDVFIVSKDGGEPRRLTTFSGGETPVAFT-DAGHILFTADIMPSTEDAGFPSNGQF 142 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----------AIG 374 +Q+Y + +G S + +G ++ K E + I Sbjct: 143 QQIYQIPVSGGRPVMFSSMP---MECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIW 199 Query: 375 VMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 +++ + E+ + P W+P G+S + +++G Sbjct: 200 MLRPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGTFN 242 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 90/241 (37%), Gaps = 30/241 (12%) Query: 228 YATYDDEDILRVYLMDTRIDRAPK--RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y + + + R + P+ + F P ++ +GK +++ ++Y Sbjct: 185 YWRKHQKSPIARDIWMLRPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGTFNVY 244 Query: 286 SVDLQSNATERLTNTL---------FINISASYSPDSSQIVFESDREGKEQLYVMQ--SN 334 S+ ++++T+ N + Y D ++ GK Q ++ S+ Sbjct: 245 RRTPGSDTSKQVTHHKQHPVRFLSMASNGNLCYGFDGE--IYTLAPGGKPQKVSVKILSD 302 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQ 393 +D++ I Q K + + SP G +AF + V + + + + Sbjct: 303 RNDKELIRQIKTSGATEMAVSPDGKEVAFILRGD----VYVTSVEYKTTKQVTNTPCQER 358 Query: 394 APTWSPSGRSLIFSRKKDG----------DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 ++P GR+L+++ ++ G K ++ + E L N+ + +P++ Sbjct: 359 GIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFTYATELKEERLTNSDIASFNPKYS 418 Query: 444 G 444 Sbjct: 419 P 419 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 9/99 (9%) Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR 408 SP G IAFT I + G + ++ + P WSP + + F+ Sbjct: 27 RHCAISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFAS 82 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + G ++ + +G + T + P V F D Sbjct: 83 DRMGSM--DVFIVSKDGGEPRRLTTFSGGETP--VAFTD 117 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 23/170 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDT----------RIDRAPKRIGNFRSMILAPRFSSN 268 F+P+ + + YA+ + + ++Y + +R+ N P++S + Sbjct: 362 FAPDGRTLVYAS-ERGGLWQLYTSTIVRKDEKQFTYATELKEERLTNSDIASFNPKYSPD 420 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN------TLFINISASYSPDSSQIV--FES 320 GK + I ++L++ + + + +SPDS I+ F Sbjct: 421 GKEIAFLENR---TAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEWSPDSKWILSEFIG 477 Query: 321 DREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 + + ++ ++G + + S + W G + + Sbjct: 478 IGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSDRAG 527 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 31/278 (11%), Positives = 88/278 (31%), Gaps = 38/278 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + ++ K + + G +T P +SP+ +++A+A+ + Sbjct: 31 ISPDGTTIAFTYKGDIFTVPVSGGKATQITT-NPAFDTTPIWSPDSKQIAFASDRMGSMD 89 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV------------QKDEAMDIY 285 + ++ P+R+ F F ++ L + + IY Sbjct: 90 --VFIVSKDGGEPRRLTTFSGGETPVAF-TDAGHILFTADIMPSTEDAGFPSNGQFQQIY 146 Query: 286 SVDLQSNATERLTNTL----FINISASYSPDSSQIV--FESDREGKE---QLYVMQSNGS 336 + + ++ IN + + + + +++++ + Sbjct: 147 QIPVSGGRPVMFSSMPMECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIWMLRPGQT 206 Query: 337 D--QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +K+ + E +PVW+P G + F + + + + Q Sbjct: 207 PRYEKQTTFIGE--DREPVWAPDGKSFYYLSEENGTFNVYRRTPGSDTSKQVTH--HKQH 262 Query: 395 PTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNGRNETL 430 P R L + + ++Y++ G+ + + Sbjct: 263 PV-----RFLSMASNGNLCYGFDGEIYTLAPGGKPQKV 295 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F P++SP+ +++A+ ++ + R + ++ + Sbjct: 405 LTNSDIASFNPKYSPDGKEIAFLENRTAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEW 464 Query: 266 SSNGKRA---LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K I + DI ++ LT + + + +A + +V+ SD Sbjct: 465 SPDSKWILSEFIGIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSD 524 Query: 322 REG 324 R G Sbjct: 525 RAG 527 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ SP G ++ F+ K ++++ ++G T I T PA+ + P W Sbjct: 26 MRHCAISPDGTTIAFTYK------GDIFTVPVSGGKATQITTNPAFDTTPIWSP 73 >gi|156741360|ref|YP_001431489.1| peptidase S9 prolyl oligopeptidase [Roseiflexus castenholzii DSM 13941] gi|156232688|gb|ABU57471.1| peptidase S9 prolyl oligopeptidase active site domain protein [Roseiflexus castenholzii DSM 13941] Length = 708 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 109/273 (39%), Gaps = 39/273 (14%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDI----LRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 R L EP+ SP+ +++A+ + R + P+R+ + + APR+ Sbjct: 26 RLGWLEEPQVSPDGREIAFVRVTIDRSANANRRAIWIAPTDGGPPRRLTSG-TNDSAPRW 84 Query: 266 SSNGKRALI-SVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG 324 S +G+ SV+ D+ +Y + RLT+ ++SPD +I F S Sbjct: 85 SPDGRWLAFVSVRGDDRPQLYVLRRDGGEARRLTSLPQGVSDPAWSPDGRRIAFLSRLNA 144 Query: 325 KEQLY-------VMQSNGSDQKRISQDK---EASYFDPVWSPQGDLIA----FTKFSGEK 370 E+ ++ K++ + + E FDP + A F S + Sbjct: 145 AERASEDASEPEPEPADEFMHKQLVERRKHEEQRRFDPRVVRRLPYRAGVEFFDDRSTQM 204 Query: 371 FAIGVMKKDGS---QERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL--- 423 + I V D + Q R + + D + AP W P G+S++ + +D + S+ + D+ Sbjct: 205 YIIEVPDDDDAPAPQPRRITDADLDFGAPVWMPDGQSVLTTATRDPEADSQFFFFDVLRV 264 Query: 424 ----NGR-NETLINTPAY-------ASDPQWVG 444 GR + + P + + D +W+ Sbjct: 265 PVLPEGRADPQRLTAPGFTHFAPLPSPDGRWIA 297 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 107/303 (35%), Gaps = 40/303 (13%) Query: 177 ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDI 236 + V+ + + ++ + DG R LT + PR+SP+ + +A+ + +D Sbjct: 44 FVRVTIDRSANANRRAIWIAPTDGGPPRRLTSGTNDSA--PRWSPDGRWLAFVSVRGDDR 101 Query: 237 LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT-- 294 ++Y++ R +R+ + + P +S +G+R + + A + S D Sbjct: 102 PQLYVLR-RDGGEARRLTSLPQGVSDPAWSPDGRRIAF-LSRLNAAERASEDASEPEPEP 159 Query: 295 ------ERLTNTLFINISASYSPDSSQIV-------FESDREGKEQLYVMQSNGS----D 337 ++L + P + + F DR + + + + Sbjct: 160 ADEFMHKQLVERRKHEEQRRFDPRVVRRLPYRAGVEFFDDRSTQMYIIEVPDDDDAPAPQ 219 Query: 338 QKRISQDKEASYFDPVWSPQGDLIAFTKFSG----------EKFAIGVMKKDGSQERLLV 387 +RI+ D + + PVW P G + T + + V+ + + + L Sbjct: 220 PRRIT-DADLDFGAPVWMPDGQSVLTTATRDPEADSQFFFFDVLRVPVLPEGRADPQRLT 278 Query: 388 EDS-NLQAPTWSPSGRSLIFSR---KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ-- 441 AP SP GR + R + + + L +D G + A + Sbjct: 279 APGFTHFAPLPSPDGRWIACLRMAENQPFASATSLVVMDAAGGEPRNLTAAADLNIAAYD 338 Query: 442 WVG 444 W+ Sbjct: 339 WLP 341 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 34/225 (15%) Query: 236 ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMD----------IY 285 I+ V D P+RI + AP + +G+ L + +D D + Sbjct: 206 IIEVPDDDDAPAPQPRRITDADLDFGAPVWMPDGQSVLTTATRDPEADSQFFFFDVLRVP 265 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE-----QLYVMQSNGSDQKR 340 + +RLT F + + SPD I E + L VM + G + + Sbjct: 266 VLPEGRADPQRLTAPGFTHFAPLPSPDGRWIACLRMAENQPFASATSLVVMDAAGGEPRN 325 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPS 400 ++ + + W P D + + + DG L + P Sbjct: 326 LTAAADLNIAAYDWLPGSDGLLCLAGWRGAQPLWRVALDGGGCERLAQ---------MPD 376 Query: 401 GRSLI-FSRKKDGDTGS---------KLYSIDLNGRNETLINTPA 435 R + F +DG +LY+ + +G L A Sbjct: 377 DRFIAEFDTGRDGTIAFVAGDAANPCELYARNKHGVERRLTAFNA 421 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 15/201 (7%) Query: 201 ANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLM--------DTRIDRAPKR 252 A D P + P+ Q V D + + P+R Sbjct: 217 APQPRRITDADLDFGAPVWMPDGQSVLTTATRDPEADSQFFFFDVLRVPVLPEGRADPQR 276 Query: 253 IGNFRSMILAPRFSSNGKRAL---ISVQKDE--AMDIYSVDLQSNATERLTNTLFINISA 307 + AP S +G+ ++ + A + +D LT +NI+A Sbjct: 277 LTAPGFTHFAPLPSPDGRWIACLRMAENQPFASATSLVVMDAAGGEPRNLTAAADLNIAA 336 Query: 308 -SYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF 366 + P S ++ + G + L+ + +G +R++Q + + + + IAF Sbjct: 337 YDWLPGSDGLLCLAGWRGAQPLWRVALDGGGCERLAQMPDDRFIAEFDTGRDGTIAFVAG 396 Query: 367 SGEKF-AIGVMKKDGSQERLL 386 + K G + RL Sbjct: 397 DAANPCELYARNKHGVERRLT 417 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 4/63 (6%) Query: 386 LVEDSNLQAPTWSPSGRSLIFSR----KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQ 441 L L+ P SP GR + F R + ++ +G + + S P+ Sbjct: 24 LYRLGWLEEPQVSPDGREIAFVRVTIDRSANANRRAIWIAPTDGGPPRRLTSGTNDSAPR 83 Query: 442 WVG 444 W Sbjct: 84 WSP 86 >gi|253567152|ref|ZP_04844602.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251943983|gb|EES84502.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 1095 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 115/302 (38%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN ++ + V +R+L+ + + L + + Sbjct: 231 FYYLSEENGTFN---VYQRTPGSDTSKQ----VTHHKQHPVRFLSMASNGNLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + A + V ++ R D+ R S +GK ++ D Sbjct: 281 GEIYTLAPGGKPQKVSVKILSDRNDKELIRQIKTSGATEM-AVSPDGKEVAFILRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 337 -VYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + + F+P +SP G IAF + AI V+ + R +++ Sbjct: 396 YATELKEERLTNSDVASFNPKYSPDGKEIAFLENRT---AIRVINLKTKKVRTVMDAQYQ 452 Query: 393 QAPT-------WSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 + + WSP + ++ F G + ++ +G+ E T + SD + Sbjct: 453 YSYSDGDQWFEWSPDSKWILSEFI-GIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAK 511 Query: 442 WV 443 WV Sbjct: 512 WV 513 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D I++V + ++T + + +SPDS QI F SDR Sbjct: 30 AISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRM 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKF- 371 G ++++ +G + +R++ ++ G I FT S +F Sbjct: 86 GSMDVFIVSKDGGEPRRLTT-FSGGETPVAFTDAG-HILFTADIMPSTEDAGFPSNGQFQ 143 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL---------IFSRKKDGDTGSKLYSID 422 I + G + ++ ++ + + G L + + + ++ + Sbjct: 144 QIYQIPVSGGRP-VMFSSMPMECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIWMLR 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 R E +P W Sbjct: 203 PGQTPRYEKQTTFIGEDREPVWAP 226 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 35/223 (15%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V + +I + P +S + K+ + Sbjct: 30 AISPDGTTIAFTY--KGDIFTVPV----SGGKATQITTNPAFDTTPIWSPDSKQIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGK- 325 + +MD++ V RLT +++ D+ I+F +D G+ Sbjct: 84 RMGSMDVFIVSKDGGEPRRLTTFSGGETPVAFT-DAGHILFTADIMPSTEDAGFPSNGQF 142 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----------AIG 374 +Q+Y + +G S + +G ++ K E + I Sbjct: 143 QQIYQIPVSGGRPVMFSSMP---MECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIW 199 Query: 375 VMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTG 415 +++ + E+ + P W+P G+S + +++G Sbjct: 200 MLRPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGTFN 242 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 90/241 (37%), Gaps = 30/241 (12%) Query: 228 YATYDDEDILRVYLMDTRIDRAPK--RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y + + + R + P+ + F P ++ +GK +++ ++Y Sbjct: 185 YWRKHQKSPIARDIWMLRPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGTFNVY 244 Query: 286 SVDLQSNATERLTNTL---------FINISASYSPDSSQIVFESDREGKEQLYVMQ--SN 334 S+ ++++T+ N + Y D ++ GK Q ++ S+ Sbjct: 245 QRTPGSDTSKQVTHHKQHPVRFLSMASNGNLCYGFDGE--IYTLAPGGKPQKVSVKILSD 302 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQ 393 +D++ I Q K + + SP G +AF + V + + + + Sbjct: 303 RNDKELIRQIKTSGATEMAVSPDGKEVAFILRGD----VYVTSVEYKTTKQVTNTPCQER 358 Query: 394 APTWSPSGRSLIFSRKKDG----------DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 ++P GR+L+++ ++ G K ++ + E L N+ + +P++ Sbjct: 359 GIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFTYATELKEERLTNSDVASFNPKYS 418 Query: 444 G 444 Sbjct: 419 P 419 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 9/99 (9%) Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR 408 SP G IAFT I + G + ++ + P WSP + + F+ Sbjct: 27 RHCAISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFAS 82 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + G ++ + +G + T + P V F D Sbjct: 83 DRMGSM--DVFIVSKDGGEPRRLTTFSGGETP--VAFTD 117 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 23/170 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDT----------RIDRAPKRIGNFRSMILAPRFSSN 268 F+P+ + + YA+ + + ++Y + +R+ N P++S + Sbjct: 362 FAPDGRTLVYAS-ERGGLWQLYTSTIVRKDEKQFTYATELKEERLTNSDVASFNPKYSPD 420 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN------TLFINISASYSPDSSQIV--FES 320 GK + I ++L++ + + + +SPDS I+ F Sbjct: 421 GKEIAFLENR---TAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEWSPDSKWILSEFIG 477 Query: 321 DREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 + + ++ ++G + + S + W G + + Sbjct: 478 IGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSDRAG 527 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 31/278 (11%), Positives = 88/278 (31%), Gaps = 38/278 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + ++ K + + G +T P +SP+ +++A+A+ + Sbjct: 31 ISPDGTTIAFTYKGDIFTVPVSGGKATQITT-NPAFDTTPIWSPDSKQIAFASDRMGSMD 89 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV------------QKDEAMDIY 285 + ++ P+R+ F F ++ L + + IY Sbjct: 90 --VFIVSKDGGEPRRLTTFSGGETPVAF-TDAGHILFTADIMPSTEDAGFPSNGQFQQIY 146 Query: 286 SVDLQSNATERLTNTL----FINISASYSPDSSQIV--FESDREGKE---QLYVMQSNGS 336 + + ++ IN + + + + +++++ + Sbjct: 147 QIPVSGGRPVMFSSMPMECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIWMLRPGQT 206 Query: 337 D--QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +K+ + E +PVW+P G + F + + + + Q Sbjct: 207 PRYEKQTTFIGE--DREPVWAPDGKSFYYLSEENGTFNVYQRTPGSDTSKQVTH--HKQH 262 Query: 395 PTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNGRNETL 430 P R L + + ++Y++ G+ + + Sbjct: 263 PV-----RFLSMASNGNLCYGFDGEIYTLAPGGKPQKV 295 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F P++SP+ +++A+ ++ + R + ++ + Sbjct: 405 LTNSDVASFNPKYSPDGKEIAFLENRTAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEW 464 Query: 266 SSNGKRA---LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K I + DI ++ LT + + + +A + +V+ SD Sbjct: 465 SPDSKWILSEFIGIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSD 524 Query: 322 REG 324 R G Sbjct: 525 RAG 527 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ SP G ++ F+ K ++++ ++G T I T PA+ + P W Sbjct: 26 MRHCAISPDGTTIAFTYK------GDIFTVPVSGGKATQITTNPAFDTTPIWSP 73 >gi|159028403|emb|CAO89845.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 1201 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 100/261 (38%), Gaps = 16/261 (6%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +++ +G ++ + D + + + FSP+ + +A + D + L Sbjct: 583 KTLATGSDDGTIKLWDVETGQEIRTLSGHNGKVNSVSFSPDGKTLATGSEDK----TIKL 638 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNT 300 + + + + FS +GK + D + ++ D+++ R L+ Sbjct: 639 WNVETGEEIGTLSGHDGYVFSVSFSRDGKTLA-TGSDDGTIKLW--DVETGQEIRTLSGH 695 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSN-GSDQKRISQDKEASYFDPVWSPQGD 359 S S+S D + F+SD G +L+ + G + + +S+ + +S G Sbjct: 696 NGKVNSVSFSSDGKTLAFDSD-GGTIKLWYIDIETGKEIRTLSEWNRGCVYSVSFSNDGK 754 Query: 360 LIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKL 418 +A T + + + ++ G + R L + + + ++S G++L D KL Sbjct: 755 TLA-TGSADKTIKLWNVET-GEEIRTLSGHNGKVNSVSFSSDGKTLA---TGSADKTIKL 809 Query: 419 YSIDLNGRNETLINTPAYASD 439 ++++ TL Sbjct: 810 WNVETGKEIRTLSGHNGEVHS 830 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 112/312 (35%), Gaps = 43/312 (13%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 G+ + G D + +LWDV+ ++I ++++G G Sbjct: 582 GKTLATGSDDGTI--KLWDVETGQEI------------------------RTLSGHNGKV 615 Query: 174 NSRILFVS-ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYD 232 NS +++ +G ++ + + + D +F FS + + +A + D Sbjct: 616 NSVSFSPDGKTLATGSEDKTIKLWNVETGEEIGTLSGHDGYVFSVSFSRDGKTLATGSDD 675 Query: 233 DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 + L D + + + + + FSS+GK + ++ +D+++ Sbjct: 676 G----TIKLWDVETGQEIRTLSGHNGKVNSVSFSSDGKTLAFD-SDGGTIKLWYIDIETG 730 Query: 293 ATER-LTN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 R L+ S S+S D + S + + + ++ R Sbjct: 731 KEIRTLSEWNRGCVYSVSFSNDGKTLATGS---ADKTIKLWNVETGEEIRTLSGHNGKVN 787 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFSRK 409 +S G +A T + + + ++ G + R L + + + ++ G++L Sbjct: 788 SVSFSSDGKTLA-TGSADKTIKLWNVET-GKEIRTLSGHNGEVHSVSFRSDGKTLA---S 842 Query: 410 KDGDTGSKLYSI 421 D KL+++ Sbjct: 843 GSSDNTIKLWNV 854 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 110/297 (37%), Gaps = 33/297 (11%) Query: 114 GRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDD--IYQSITGEKG 171 G+ + G D +E LW+V K++ +S + I + +Y+ G Sbjct: 879 GKTLATGSDDTTIE--LWNVGTGKEMRTLIGHNSTGLCQL---EICSELAVYRVSFSPDG 933 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 +++ + N++ + + + + I+ FSP+ + +A ++ Sbjct: 934 ----------KTLATSSDDNTIKLWNVETGQEIGTLRGHNGIVLSVSFSPDGKSLATGSW 983 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D + L + + + + S + + FS +GK + S D+ + ++ D+++ Sbjct: 984 DK----TIKLWNVETGQEIRTLKGHDSSVYSVNFSPDGKTLV-SGSVDKTIKLW--DVET 1036 Query: 292 NATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 R L+ S S+S D + +G + + + + R + F Sbjct: 1037 GKEIRTLSGHNSYVSSVSFSSDGKTLA-TGSYDGT--IKLWNGSTGQEIRTLSGHDGYVF 1093 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLI 405 +S G +A I + + +E + D + + ++S G++L Sbjct: 1094 SVSFSSDGKTLATGSEDKT---IKLWDVETGEEIRTLSGHDGYVFSVSFSSDGKTLA 1147 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 19/231 (8%) Query: 210 RDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNG 269 + ++ FSP+ + +A ++ D+ + L + + + ++L+ FS +G Sbjct: 920 SELAVYRVSFSPDGKTLATSSDDN----TIKLWNVETGQEIGTLRGHNGIVLSVSFSPDG 975 Query: 270 KRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQL 328 K + D+ + ++ ++++ R L S ++SPD +V S + + Sbjct: 976 KSLA-TGSWDKTIKLW--NVETGQEIRTLKGHDSSVYSVNFSPDGKTLVSGSV---DKTI 1029 Query: 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV- 387 + + R + +S G +A + G I + QE + Sbjct: 1030 KLWDVETGKEIRTLSGHNSYVSSVSFSSDGKTLATGSYDGT---IKLWNGSTGQEIRTLS 1086 Query: 388 -EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYA 437 D + + ++S G++L + D KL+ ++ TL Y Sbjct: 1087 GHDGYVFSVSFSSDGKTLATGSE---DKTIKLWDVETGEEIRTLSGHDGYV 1134 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 15/183 (8%) Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYS 310 R+ S + + FS +GK + D + ++ D+++ R L+ S S+S Sbjct: 565 RLEGHNSRVNSVSFSRDGKTLA-TGSDDGTIKLW--DVETGQEIRTLSGHNGKVNSVSFS 621 Query: 311 PDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEK 370 PD + S+ + + + ++ + F +S G +A G Sbjct: 622 PDGKTLATGSE---DKTIKLWNVETGEEIGTLSGHDGYVFSVSFSRDGKTLATGSDDGT- 677 Query: 371 FAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 I + + QE + + + ++S G++L F KL+ ID+ E Sbjct: 678 --IKLWDVETGQEIRTLSGHNGKVNSVSFSSDGKTLAFDSD---GGTIKLWYIDIETGKE 732 Query: 429 TLI 431 Sbjct: 733 IRT 735 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 89/263 (33%), Gaps = 29/263 (11%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 +++ +G ++ + + + + + F + + +A + D+ + L Sbjct: 796 KTLATGSADKTIKLWNVETGKEIRTLSGHNGEVHSVSFRSDGKTLASGSSDN----TIKL 851 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 + + + S + + FSS+GK + D +++++V L Sbjct: 852 WNVETSLEIRTLYGHNSTVFSVSFSSDGKTLA-TGSDDTTIELWNV-GTGKEMRTLIGHN 909 Query: 302 FIN------------ISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 S+SPD + SD + + + + Sbjct: 910 STGLCQLEICSELAVYRVSFSPDGKTLATSSD---DNTIKLWNVETGQEIGTLRGHNGIV 966 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV--EDSNLQAPTWSPSGRSLIFS 407 +SP G +A + I + + QE + DS++ + +SP G++L+ Sbjct: 967 LSVSFSPDGKSLATGSWDKT---IKLWNVETGQEIRTLKGHDSSVYSVNFSPDGKTLV-- 1021 Query: 408 RKKDGDTGSKLYSIDLNGRNETL 430 D KL+ ++ TL Sbjct: 1022 -SGSVDKTIKLWDVETGKEIRTL 1043 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 36/175 (20%) Query: 111 LVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEK 170 LV+G V K +LWDV+ K+I H + K Sbjct: 1020 LVSGSVDKT--------IKLWDVETGKEIRTLS-----------GHNSYVSSVSFSSDGK 1060 Query: 171 GDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYAT 230 ++ +G ++ + + D +F FS + + +A + Sbjct: 1061 ------------TLATGSYDGTIKLWNGSTGQEIRTLSGHDGYVFSVSFSSDGKTLATGS 1108 Query: 231 YDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 D + L D + + + + FSS+GK + +D+ + ++ Sbjct: 1109 EDK----TIKLWDVETGEEIRTLSGHDGYVFSVSFSSDGKTLA-TGSEDKTIKLW 1158 >gi|269928695|ref|YP_003321016.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269788052|gb|ACZ40194.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 647 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 32/174 (18%) Query: 263 PRFSSNGKRALISVQK------DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQI 316 P+ S +G+R +++ I+ V + T + + +SPD ++ Sbjct: 28 PQISPDGERIAFTLRPVSKEKEHPESAIWVVSFAGGEPRQFTAGQWDDEEPRWSPDGRRL 87 Query: 317 VFESDRE--GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----------- 363 F SDR GK+ +Y+M ++G + +R+ D++ WSP G +A Sbjct: 88 AFLSDRAERGKKSVYIMPADGGEARRV-FDQQGDMEQLSWSPDGRFLAVLFTDPETEEEK 146 Query: 364 --------TKFSGEKF---AIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLI 405 + + + V+ + + + E + WSP G L Sbjct: 147 KRKEERDDARVWDTDYKYQRLWVIDVEAGTAKAVSPEGRQVWTYAWSPDGERLA 200 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 105/297 (35%), Gaps = 40/297 (13%) Query: 152 RKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRD 211 + + H D S GE+ F R + S ++++ V+ G R T + Sbjct: 18 QLVTHRRPSDPQISPDGERIAFTLRPV----SKEKEHPESAIWVVSFAGGEPRQFTAGQW 73 Query: 212 QILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 EPR+SP+ +++A+ + E + + +R+ + + + +S +G+ Sbjct: 74 D-DEEPRWSPDGRRLAFLSDRAERGKKSVYIMPADGGEARRVFDQQGDMEQLSWSPDGRF 132 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVM 331 + E + + + + D ++L+V+ Sbjct: 133 LAVLFTDPETEEEKK------------RKEERDDARVWDTDYKY----------QRLWVI 170 Query: 332 QSNGSDQKRISQDKEASYFDPVWSPQGDLIAF----TKFSGEKF---AIGVMKKDGSQER 384 K +S + + WSP G+ +A T + F + ++ + G Sbjct: 171 DVEAGTAKAVSPEGRQVWTY-AWSPDGERLALNLTPTPRIDDIFLENEVVIVPRAGGDPT 229 Query: 385 LLVED-SNLQAPTWSPSGRSLIFSRKKDGD--TGSKLYSIDLNGRNETLINTPAYAS 438 + + TWS G+ L + R + G G +Y I + G E + TP Y Sbjct: 230 PVFRQIGMAEHLTWSQDGKYLAY-RARAGRVVHGDYVYRIPVEG-GEPVCLTPGYDG 284 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 8/103 (7%) Query: 350 FDPVWSPQGDLIAFTKF------SGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSPSGR 402 DP SP G+ IAFT + AI V+ G + R + + P WSP GR Sbjct: 26 SDPQISPDGERIAFTLRPVSKEKEHPESAIWVVSFAGGEPRQFTAGQWDDEEPRWSPDGR 85 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDPQWVG 444 L F + +Y + +G + + W Sbjct: 86 RLAFLSDRAERGKKSVYIMPADGGEARRVFDQQGDMEQLSWSP 128 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 385 LLVEDSNLQAPTWSPSGRSLIFS----RKKDGDTGSKLYSIDLNGRNETLINTPAYAS-D 439 LV P SP G + F+ K+ S ++ + G + + Sbjct: 18 QLVTHRRPSDPQISPDGERIAFTLRPVSKEKEHPESAIWVVSFAGGEPRQFTAGQWDDEE 77 Query: 440 PQWVG 444 P+W Sbjct: 78 PRWSP 82 >gi|301164717|emb|CBW24276.1| putative exported peptidase [Bacteroides fragilis 638R] Length = 1095 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 115/302 (38%), Gaps = 40/302 (13%) Query: 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 + ++ E G FN + S K V +R+L+ + + L + + Sbjct: 231 FYYLSEENGTFN----VYQHTPGSDTSK---QVTHHKQHPVRFLSMASNGNLC---YGFD 280 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + A + V ++ R D+ R S +GK ++ D Sbjct: 281 GEIYTLAPGGKPQKVSVKILSDRNDKDLIRQIKTSGATEM-AVSPDGKEVAFILRGD--- 336 Query: 283 DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRIS 342 +Y ++ T+++TNT ++PD +V+ S+R G QLY D+K+ + Sbjct: 337 -VYVTSVEYKTTKQVTNTPCQERGIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFT 395 Query: 343 Q----------DKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNL 392 + + + F+P +SP G IAF + AI V+ + R +++ Sbjct: 396 YATELKEERLTNSDIASFNPKYSPDGKEIAFLENRT---AIRVINLKTKKVRTVMDAQYQ 452 Query: 393 QAPT-------WSPSGRSLI--FSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP--Q 441 + + WSP + ++ F G + ++ +G+ E T + SD + Sbjct: 453 YSYSDGDQWFEWSPDSKWILSEFI-GIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAK 511 Query: 442 WV 443 WV Sbjct: 512 WV 513 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 264 RFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G + + D I++V + ++T + + +SPDS QI F SDR Sbjct: 30 AISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFASDRM 85 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF-----------SGEKF- 371 G ++++ +G + +R++ ++ G I FT S +F Sbjct: 86 GSMDVFIVSKDGGEPRRLTT-FSGGETPVAFTDAG-HILFTADIMPSTEDAGFPSNGQFQ 143 Query: 372 AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL---------IFSRKKDGDTGSKLYSID 422 I + G + ++ ++ + + G L + + + ++ + Sbjct: 144 QIYQIPVSGGRP-VMFSSMPMECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIWMLR 202 Query: 423 L--NGRNETLINTPAYASDPQWVG 444 R E +P W Sbjct: 203 PGQTPRYEKQTTFIGEDREPVWAP 226 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 35/236 (14%) Query: 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ 277 SP+ +A+ DI V + +I + P +S + K+ + Sbjct: 30 AISPDGTTIAFTY--KGDIFTVPV----SGGKATQITTNPAFDTTPIWSPDSKQIAFASD 83 Query: 278 KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESD-----------REGK- 325 + +MD++ V RLT +++ D+ I+F +D G+ Sbjct: 84 RMGSMDVFIVSKDGGEPRRLTTFSGGETPVAFT-DAGHILFTADIMPSTEDAGFPSNGQF 142 Query: 326 EQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF-----------AIG 374 +Q+Y + +G S + +G ++ K E + I Sbjct: 143 QQIYQIPVSGGRPVMFSSMP---MECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIW 199 Query: 375 VMKKDGSQ--ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNE 428 +++ + E+ + P W+P G+S + +++G ++ + + Sbjct: 200 MLRPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGTFNVYQHTPGSDTSKQ 255 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 89/241 (36%), Gaps = 30/241 (12%) Query: 228 YATYDDEDILRVYLMDTRIDRAPK--RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIY 285 Y + + + R + P+ + F P ++ +GK +++ ++Y Sbjct: 185 YWRKHQKSPIARDIWMLRPGQTPRYEKQTTFIGEDREPVWAPDGKSFYYLSEENGTFNVY 244 Query: 286 SVDLQSNATERLTNTL---------FINISASYSPDSSQIVFESDREGKEQLYVMQ--SN 334 S+ ++++T+ N + Y D ++ GK Q ++ S+ Sbjct: 245 QHTPGSDTSKQVTHHKQHPVRFLSMASNGNLCYGFDGE--IYTLAPGGKPQKVSVKILSD 302 Query: 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS-NLQ 393 +D+ I Q K + + SP G +AF + V + + + + Sbjct: 303 RNDKDLIRQIKTSGATEMAVSPDGKEVAFILRGD----VYVTSVEYKTTKQVTNTPCQER 358 Query: 394 APTWSPSGRSLIFSRKKDG----------DTGSKLYSIDLNGRNETLINTPAYASDPQWV 443 ++P GR+L+++ ++ G K ++ + E L N+ + +P++ Sbjct: 359 GIDFAPDGRTLVYASERGGLWQLYTSTIVRKDEKQFTYATELKEERLTNSDIASFNPKYS 418 Query: 444 G 444 Sbjct: 419 P 419 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 9/99 (9%) Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSR 408 SP G IAFT I + G + ++ + P WSP + + F+ Sbjct: 27 RHCAISPDGTTIAFTYKGD----IFTVPVSGGKATQITTNPAFDTTPIWSPDSKQIAFAS 82 Query: 409 KKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 + G ++ + +G + T + P V F D Sbjct: 83 DRMGSM--DVFIVSKDGGEPRRLTTFSGGETP--VAFTD 117 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/278 (11%), Positives = 88/278 (31%), Gaps = 38/278 (13%) Query: 178 LFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDIL 237 + + ++ K + + G +T P +SP+ +++A+A+ + Sbjct: 31 ISPDGTTIAFTYKGDIFTVPVSGGKATQITT-NPAFDTTPIWSPDSKQIAFASDRMGSMD 89 Query: 238 RVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV------------QKDEAMDIY 285 + ++ P+R+ F F ++ L + + IY Sbjct: 90 --VFIVSKDGGEPRRLTTFSGGETPVAF-TDAGHILFTADIMPSTEDAGFPSNGQFQQIY 146 Query: 286 SVDLQSNATERLTNTL----FINISASYSPDSSQIV--FESDREGKE---QLYVMQSNGS 336 + + ++ IN + + + + +++++ + Sbjct: 147 QIPVSGGRPVMFSSMPMECISINKEGTILYQDKKGYEDYWRKHQKSPIARDIWMLRPGQT 206 Query: 337 D--QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQA 394 +K+ + E +PVW+P G + F + + + + Q Sbjct: 207 PRYEKQTTFIGE--DREPVWAPDGKSFYYLSEENGTFNVYQHTPGSDTSKQVTH--HKQH 262 Query: 395 PTWSPSGRSLIFSRKKDG--DTGSKLYSIDLNGRNETL 430 P R L + + ++Y++ G+ + + Sbjct: 263 PV-----RFLSMASNGNLCYGFDGEIYTLAPGGKPQKV 295 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 23/170 (13%) Query: 219 FSPNQQKVAYATYDDEDILRVYLMDT----------RIDRAPKRIGNFRSMILAPRFSSN 268 F+P+ + + YA+ + + ++Y + +R+ N P++S + Sbjct: 362 FAPDGRTLVYAS-ERGGLWQLYTSTIVRKDEKQFTYATELKEERLTNSDIASFNPKYSPD 420 Query: 269 GKRALISVQKDEAMDIYSVDLQSNATERLTN------TLFINISASYSPDSSQIV--FES 320 GK + I ++L++ + + + +SPDS I+ F Sbjct: 421 GKEIAFLENR---TAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEWSPDSKWILSEFIG 477 Query: 321 DREGKEQ-LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE 369 + + ++ ++G + + S + W G + + Sbjct: 478 IGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSDRAG 527 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 207 TPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + D F P++SP+ +++A+ ++ + R + ++ + Sbjct: 405 LTNSDIASFNPKYSPDGKEIAFLENRTAIRVINLKTKKVRTVMDAQYQYSYSDGDQWFEW 464 Query: 266 SSNGKRA---LISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFESD 321 S + K I + DI ++ LT + + + +A + +V+ SD Sbjct: 465 SPDSKWILSEFIGIGGWNNKDIVLLNADGKGEMHNLTESGYSDGNAKWVLGGKAMVWFSD 524 Query: 322 REG 324 R G Sbjct: 525 RAG 527 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Query: 392 LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVG 444 ++ SP G ++ F+ K ++++ ++G T I T PA+ + P W Sbjct: 26 MRHCAISPDGTTIAFTYK------GDIFTVPVSGGKATQITTNPAFDTTPIWSP 73 >gi|269837974|ref|YP_003320202.1| peptidase S9 prolyl oligopeptidase active site domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787237|gb|ACZ39380.1| peptidase S9 prolyl oligopeptidase active site domain protein [Sphaerobacter thermophilus DSM 20745] Length = 652 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 51/277 (18%) Query: 219 FSPNQQKVAYA----TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALI 274 SP+ + VAY + + E + + P+R+ + APR+S +G+R Sbjct: 23 ISPDGRHVAYVTAPASKEGEHPVSAIWLVAADGGTPRRLTTSEAADGAPRWSPDGRRLAF 82 Query: 275 SVQK--DEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREG-------- 324 + +Y +DL R+T A++SPD S + + + Sbjct: 83 VSDRLERGKPQVYVLDLAGGEAVRVTAAEGGVGQAAWSPDGSLLAYTAMDAETEEEKRRR 142 Query: 325 --------------KEQLYVMQSNGS----------DQKRISQDKEA----SYFDPVWSP 356 + L+V+ + + +RIS + + W+P Sbjct: 143 EERDDARLVDADVKRASLWVIAVPEATAAIDPNALPEPRRISPEGIHIGTEADAGFTWAP 202 Query: 357 QGD-LIAFTKFSGEKF-----AIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 G + + + ++ DG L + L AP +SP G++L F + Sbjct: 203 DGKSFVVLASPDPKAHYTFAPEMAILSLDGELRSLGRFEGLLTAPKFSPDGKTLAFVAAE 262 Query: 411 DG-DTGSKLYSIDLNGRNETLINTP--AYASDPQWVG 444 + L ++ +G ++ D W+ Sbjct: 263 EVMPAFFSLQTMPASGGQPHIVAPGFEGSFRDFHWLP 299 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 57/245 (23%) Query: 258 SMILAPRFSSNGKRALIS---VQKDEA---MDIYSVDLQSNATERLTNTLFINISASYSP 311 +++ + S +G+ K+ I+ V RLT + + + +SP Sbjct: 16 TLVTDVQISPDGRHVAYVTAPASKEGEHPVSAIWLVAADGGTPRRLTTSEAADGAPRWSP 75 Query: 312 DSSQIVFESDR--EGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKF--- 366 D ++ F SDR GK Q+YV+ G + R++ E WSP G L+A+T Sbjct: 76 DGRRLAFVSDRLERGKPQVYVLDLAGGEAVRVT-AAEGGVGQAAWSPDGSLLAYTAMDAE 134 Query: 367 ----------------------SGEKFAIGVMKKDGS-------QERLLVEDS------N 391 + I V + + + R + + Sbjct: 135 TEEEKRRREERDDARLVDADVKRASLWVIAVPEATAAIDPNALPEPRRISPEGIHIGTEA 194 Query: 392 LQAPTWSPSGRSLIFSRKKDGD----TGSKLYSIDLN------GRNETLINTPAYASDPQ 441 TW+P G+S + D ++ + L+ GR E L+ P ++ D + Sbjct: 195 DAGFTWAPDGKSFVVLASPDPKAHYTFAPEMAILSLDGELRSLGRFEGLLTAPKFSPDGK 254 Query: 442 WVGFM 446 + F+ Sbjct: 255 TLAFV 259 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 51/261 (19%) Query: 193 LCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR 252 + ++ DG R LT S + PR+SP+ +++A+ + E + R Sbjct: 48 IWLVAADGGTPRRLTTS-EAADGAPRWSPDGRRLAFVSDRLERGKPQVYVLDLAGGEAVR 106 Query: 253 IGNFRSMILAPRFSSNGKRALISV----------QKDEAMDIYSVDLQSN---------- 292 + + +S +G + +++E D VD Sbjct: 107 VTAAEGGVGQAAWSPDGSLLAYTAMDAETEEEKRRREERDDARLVDADVKRASLWVIAVP 166 Query: 293 ------------ATERLT-NTLFINISA----SYSPDSSQIVFESDREGK------EQLY 329 R++ + I A +++PD V + + K ++ Sbjct: 167 EATAAIDPNALPEPRRISPEGIHIGTEADAGFTWAPDGKSFVVLASPDPKAHYTFAPEMA 226 Query: 330 VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS---GEKFAIGVMKKDGSQERLL 386 ++ +G + R E P +SP G +AF F++ M G Q ++ Sbjct: 227 ILSLDG--ELRSLGRFEGLLTAPKFSPDGKTLAFVAAEEVMPAFFSLQTMPASGGQPHIV 284 Query: 387 VED--SNLQAPTWSPSGRSLI 405 + + W P G ++ Sbjct: 285 APGFEGSFRDFHWLPDGERIV 305 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 102/316 (32%), Gaps = 53/316 (16%) Query: 176 RILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDED 235 R+ FVS+ + G K + V+D G +T + + + +SP+ +AY D E Sbjct: 79 RLAFVSDRLERG--KPQVYVLDLAGGEAVRVTA-AEGGVGQAAWSPDGSLLAYTAMDAET 135 Query: 236 ILRVYL------------------------------MDTRIDRAPKRIGNFRSMIL---- 261 +D P+RI I Sbjct: 136 EEEKRRREERDDARLVDADVKRASLWVIAVPEATAAIDPNALPEPRRISPEGIHIGTEAD 195 Query: 262 -APRFSSNGKRALISVQKDE------AMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 ++ +GK ++ D A ++ + L L + + +SPD Sbjct: 196 AGFTWAPDGKSFVVLASPDPKAHYTFAPEMAILSLD-GELRSLGRFEGLLTAPKFSPDGK 254 Query: 315 QIVFESDREGKEQLY---VMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKF 371 + F + E + M ++G ++ E S+ D W P G+ I + G++ Sbjct: 255 TLAFVAAEEVMPAFFSLQTMPASGGQPHIVAPGFEGSFRDFHWLPDGERIVTSVEMGQQV 314 Query: 372 AIGVMKKDGSQERLLVED----SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRN 427 + V + + A S SG F D G +Y+ DL G Sbjct: 315 TVKVFNLTSGEVSDAFAPFERVGVVTAFRLSASGDRAAFVYAHDESYG-DVYAADLGGEP 373 Query: 428 ETLINTPAYASDPQWV 443 L + + D +W Sbjct: 374 RRLTDLNPWTRDYEWG 389 >gi|213028842|ref|ZP_03343289.1| translocation protein TolB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 117 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 32 IHAFVKVATNSA--NYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ 89 +HA V++ + P+ + K+ + +V+ DL+ S FN + + Q Sbjct: 1 MHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQ 60 Query: 90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRV 126 + + + W++LG ++ G V + Sbjct: 61 QPATAQEV-QPTAWSALGIDAVIVGLVTPNPDGSYNL 96 >gi|242072218|ref|XP_002446045.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor] gi|241937228|gb|EES10373.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor] Length = 730 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 69/294 (23%) Query: 216 EPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS--SNGKRAL 273 P S + K+A+ + + + R+ K I AP ++ + Sbjct: 396 FPTISNDGSKLAFVDNEFKAVWVADSQGLRVVYETK----GPDNIFAPMWNQNPDKDILY 451 Query: 274 ISVQKDEAM-------DIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKE 326 + + I +V + +LT F N S SPD S+ VF S R+G + Sbjct: 452 VCMGPSFNAGKPLEICAIPNVSSGTRQRRQLTKGKFNNAFPSSSPDGSRFVFRSTRDGGD 511 Query: 327 ----QLYVM------QSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSG-------- 368 LY+ + +G R++ + E + WSP+GD I F+ Sbjct: 512 KKHKNLYIAEDAEVGEYSGGTVTRLT-NGEWTDTHCQWSPRGDWIVFSSTRDKPKDAPEL 570 Query: 369 ------EKFAIGVMKKD--GSQERLLVE----DSNLQAPTWSPSGRSLIFSRK------- 409 +A+ ++K R++ ++ P +SP GRS+ + Sbjct: 571 DNGLDSGYYAVFMVKVSDPTVVIRVVQSGDDLGGHVNHPVFSPDGRSIAMTADLAAVSAD 630 Query: 410 --------KDGDTGSKLYSIDLN----------GRNETLINTPAYASDPQWVGF 445 ++ +D++ + + ++ S P W F Sbjct: 631 PISLPLFIHSVRPYGDIFVVDIDPDDARKNKDVKKFHRVTHSRYEYSTPAWTMF 684 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 34/173 (19%) Query: 200 GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTR--------IDRAPK 251 G R P SP+ + + + D + + Sbjct: 475 GTRQRRQLTKGKFNNAFPSSSPDGSRFVFRSTRDGGDKKHKNLYIAEDAEVGEYSGGTVT 534 Query: 252 RIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSP 311 R+ N ++S G + S +D+ D +D ++ Sbjct: 535 RLTNGEWTDTHCQWSPRGDWIVFSSTRDKPKDAPELD------------NGLDS------ 576 Query: 312 DSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFT 364 VF + + +G D PV+SP G IA T Sbjct: 577 -GYYAVFMVKVSDPTVVIRVVQSGDDL-------GGHVNHPVFSPDGRSIAMT 621 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 71/175 (40%), Gaps = 18/175 (10%) Query: 277 QKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDR---------EGKEQ 327 ++ +Y +L++ TERLT ++S + SP ++ + R + + Sbjct: 164 RRSPWTVVYKTNLRTGKTERLTPKGQFDLSPAVSPSGKKVAMATFRPEGWEGEIEDLQTD 223 Query: 328 LYVMQSNGSD-QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERL 385 ++VM +KR+ ++ P W+ D+I F + G+ + + ++ R+ Sbjct: 224 IFVMNVERPPMRKRLIKNG----GWPSWASD-DVIFFHRKVGDTWGVFRHDTRTNETVRV 278 Query: 386 LVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDP 440 E + P + S + + + + + ++ R+ + +T A A P Sbjct: 279 TPEAFDAVTPA-AISETKVAVATIRQKSKFTDV-RVEAQYRHIEIFDTAAGAGQP 331 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 14/154 (9%) Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQK---------DEAM 282 + V +R+ L+P S +GK+ ++ + D Sbjct: 163 ERRSPWTVVYKTNLRTGKTERLTPKGQFDLSPAVSPSGKKVAMATFRPEGWEGEIEDLQT 222 Query: 283 DIYSVDLQSNATE-RLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 DI+ ++++ RL S++ D I F ++ + ++ R+ Sbjct: 223 DIFVMNVERPPMRKRLIKNGGW---PSWASD-DVIFFHRKVGDTWGVFRHDTRTNETVRV 278 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGV 375 + + + S +A + + + V Sbjct: 279 TPEAFDAVTPAAISETKVAVATIRQKSKFTDVRV 312 >gi|257093786|ref|YP_003167427.1| YD repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046310|gb|ACV35498.1| YD repeat protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 750 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 109/310 (35%), Gaps = 15/310 (4%) Query: 135 DRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLC 194 D +QI+ + WR + + EK +++ VV+ + ++ Sbjct: 387 DGQQIVTAARDGTARLWRVSGDEGQARVLRG--HEKPVWSAEFSPDGRHVVTTSLDGTVR 444 Query: 195 VMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 + G + FSP+ + VA ++ DD V L P+ + Sbjct: 445 LWPTAGDGEALVWRGHTWPAGHAVFSPDGRWVASSSLDD----TVRLWPVGDHAQPRVLQ 500 Query: 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSS 314 + A FS + +R S D + ++SVD S L S ++SPD Sbjct: 501 GHTGWVRAAAFSPDSRRLA-SASADGTVRLWSVD-GSAEPLVLRGHGGQVSSVAFSPDGK 558 Query: 315 QIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 F + + ++G + + + + V+SP G L+ G + Sbjct: 559 ---FVVTAARDNTVRIWPADGQGGPLVLRGHGDAVSNVVFSPDGTLVGSASADGTA-RVW 614 Query: 375 VMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTP 434 + G+ L +++ + +SP R ++ + + D ++++ D G+ L Sbjct: 615 RVDGRGTPVILRSHQASVTSIAFSPDSRRVLTASR---DGTARVWPADGKGQEIVLRGHR 671 Query: 435 AYASDPQWVG 444 + + Sbjct: 672 GAVTSAAFSP 681 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 102/273 (37%), Gaps = 28/273 (10%) Query: 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYL 241 VV+ + + DG+ + + FS + +++ A+ D V L Sbjct: 223 RQVVTASADATARLWHSDGSGQPIIQRGHTDQVLSAAFSGDGKRLLTASLDG----TVRL 278 Query: 242 MDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTL 301 +G R + FS +G+ I DE ++ L L Sbjct: 279 WPVDGQGEADVLGENRGPVRQASFSPDGRWVAIVA-ADETARLW--PLNGGQPVVLRGHA 335 Query: 302 FINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLI 361 +SA++S DS++++ ++ +G +++ ++++ + + E + +SP G I Sbjct: 336 APVLSAAFSADSTRLITTAE-DGTARIWPLEAS---EPVVLHGHEGPIWRAAFSPDGQQI 391 Query: 362 AFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWS----PSGRSLIFSRKKDGDTGSK 417 G + + D Q R+L + P WS P GR ++ + D + Sbjct: 392 VTAARDGTA-RLWRVSGDEGQARVL---RGHEKPVWSAEFSPDGRHVVTTSL---DGTVR 444 Query: 418 LYSIDLNG-----RNETLINTPA-YASDPQWVG 444 L+ +G R T A ++ D +WV Sbjct: 445 LWPTAGDGEALVWRGHTWPAGHAVFSPDGRWVA 477 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 20/285 (7%) Query: 168 GEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVA 227 E+G ++ + + + + DG+ D L FSP+ + + Sbjct: 38 HEQGVTSASFSPDGRQIATTSRDGKVNLWPADGSGRARTLSIADGPLASAAFSPDGRHLL 97 Query: 228 YATYDDEDILRVYLMDTRIDRAPKRIGNFRSMI--LAPRFSSNGKRALISVQKDEAMDIY 285 + + V + T P N A FS +G+R +++ D I+ Sbjct: 98 VTPLEHGN---VQVWPTAAGGGPVNPVNLGDTARLRAAAFSPDGQRVVVAYD-DGLARIW 153 Query: 286 SVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D A L + +SA++S D Q+V + R+G +L+ + + Sbjct: 154 PAD-GHGAPILLKGHTWQVLSAAFSADGRQVV-TASRDGTARLW--SAADGKLLAVLDGH 209 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 +SP G + + G + + +S G+ L+ Sbjct: 210 AGPVLAASFSPDGRQVVTASADATA-RLWHSDGSGQPIIQRGHTDQVLSAAFSGDGKRLL 268 Query: 406 FSRKKDGDTGSKLYSIDLN------GRNETLINTPAYASDPQWVG 444 + D +L+ +D G N + +++ D +WV Sbjct: 269 TASL---DGTVRLWPVDGQGEADVLGENRGPVRQASFSPDGRWVA 310 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 83/228 (36%), Gaps = 10/228 (4%) Query: 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD 243 V S + +++ + + + FSP+ +++A A+ D V L Sbjct: 476 VASSSLDDTVRLWPVGDHAQPRVLQGHTGWVRAAAFSPDSRRLASASADG----TVRLWS 531 Query: 244 TRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFI 303 P + + + FS +GK +++ +D + I+ D Q L Sbjct: 532 VDGSAEPLVLRGHGGQVSSVAFSPDGKF-VVTAARDNTVRIWPADGQGGPLV-LRGHGDA 589 Query: 304 NISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 + +SPD + +V + +G +++ + +G I + +AS +SP + Sbjct: 590 VSNVVFSPDGT-LVGSASADGTARVWRV--DGRGTPVILRSHQASVTSIAFSPDSRRVLT 646 Query: 364 TKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKD 411 G + G + L + + +SP G ++ + + Sbjct: 647 ASRDGTA-RVWPADGKGQEIVLRGHRGAVTSAAFSPDGSHVVTASRDG 693 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 16/223 (7%) Query: 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRF 265 + +Q + FSP+ +++A + D + V L + + + + F Sbjct: 34 VLKGHEQGVTSASFSPDGRQIATTSRDGK----VNLWPADGSGRARTLSIADGPLASAAF 89 Query: 266 SSNGKRALISVQKDEAMDIYSVDLQSN--ATERLTNTLFINISASYSPDSSQIVFESDRE 323 S +G+ L++ + + ++ L +T +A++SPD ++V D + Sbjct: 90 SPDGRHLLVTPLEHGNVQVWPTAAGGGPVNPVNLGDT-ARLRAAAFSPDGQRVVVAYD-D 147 Query: 324 GKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE 383 G +++ ++G + + +S G + G + DG Sbjct: 148 GLARIW--PADGHGAPILLKGHTWQVLSAAFSADGRQVVTASRDGTA-RLW-SAADGKLL 203 Query: 384 RLL-VEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 +L + A ++SP GR ++ + D ++L+ D +G Sbjct: 204 AVLDGHAGPVLAASFSPDGRQVVTAS---ADATARLWHSDGSG 243 Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 7/207 (3%) Query: 230 TYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDL 289 +D +RV + + + FS +G++ + +D ++++ D Sbjct: 12 RHDPLGGVRVARQVAEQLLPLNVLKGHEQGVTSASFSPDGRQIA-TTSRDGKVNLWPADG 70 Query: 290 QSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASY 349 A L+ SA++SPD ++ G Q++ + G ++ A Sbjct: 71 SGRART-LSIADGPLASAAFSPDGRHLLVTPLEHGNVQVWPTAAGGGPVNPVNLGDTARL 129 Query: 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRK 409 +SP G + + I G+ L + + +S GR ++ + + Sbjct: 130 RAAAFSPDGQRVV-VAYDDGLARIWPADGHGAPILLKGHTWQVLSAAFSADGRQVVTASR 188 Query: 410 KDGDTGSKLYSIDLNGRNETLINTPAY 436 D ++L+S +G+ +++ A Sbjct: 189 ---DGTARLWSA-ADGKLLAVLDGHAG 211 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 9/195 (4%) Query: 181 SESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVY 240 S + S ++ + DG+ + + FSP+ + V A D+ V Sbjct: 515 SRRLASASADGTVRLWSVDGSAEPLVLRGHGGQVSSVAFSPDGKFVVTAARDN----TVR 570 Query: 241 LMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 + P + + FS +G + S D ++ VD + L + Sbjct: 571 IWPADGQGGPLVLRGHGDAVSNVVFSPDGT-LVGSASADGTARVWRVDGRGTPVI-LRSH 628 Query: 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 S ++SPD S+ V + R+G +++ ++G Q+ + + + +SP G Sbjct: 629 QASVTSIAFSPD-SRRVLTASRDGTARVW--PADGKGQEIVLRGHRGAVTSAAFSPDGSH 685 Query: 361 IAFTKFSGEKFAIGV 375 + G V Sbjct: 686 VVTASRDGTARYWRV 700 >gi|209966436|ref|YP_002299351.1| acylaminoacyl peptidase, putative [Rhodospirillum centenum SW] gi|209959902|gb|ACJ00539.1| acylaminoacyl peptidase, putative [Rhodospirillum centenum SW] Length = 710 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 57/284 (20%) Query: 216 EPRFSPNQQKVAYATYDDE----DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 +P+ SP+ +++ YA + + + R+ + + R R+S +G R Sbjct: 53 DPQISPDGKQIVYARVGMDIMKDRAVPTLWVVDHEGRSHRPLLPGRVPASLARWSPDGGR 112 Query: 272 ALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFE------------ 319 + I+ + + T +T+ + ++SPD + F Sbjct: 113 IAYVQAEGGQRQIHVRWMDTGQTATVTHLTEDPDNLAWSPDGRWLAFTMLVKAEGKPLGT 172 Query: 320 -----------------------SD-----REGKEQLYVMQSNGSDQKRISQDKEASYFD 351 +D +G+ L+V+ + G ++++ Sbjct: 173 MPPKPDGAEWAPKVKVVDSMVYRADGAGFLEQGRHHLFVVPAEGGTPRQLTSGDFDHRGQ 232 Query: 352 PVWSPQGDLIAFTKFSGEKFA--------IGVMKKDGSQERLLVEDSNLQAPTWSPSGRS 403 P W P G I + V KDG+ L P SP GR Sbjct: 233 PAWLPDGSAIIIAANRNPDWETDPLNQDLHEVSVKDGTIRTLTTRKGPDSDPAVSPDGRY 292 Query: 404 LIFSR---KKDGDTGSKLYSID-LNGRNETLINTPAYASD-PQW 442 + F+ ++ G S+L +D G TL + D P W Sbjct: 293 IAFTGFEDQRRGYHNSRLSVLDRRTGEIRTLTEGLDRSVDAPAW 336 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 98/274 (35%), Gaps = 33/274 (12%) Query: 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI 246 G + SL DG I Y+ Q R+ Q ++ + D R Sbjct: 97 GRVPASLARWSPDGGRIAYVQAEGGQRQIHVRWMDTGQTATVTHLTEDPDNLAWSPDGRW 156 Query: 247 -------DRAPKRIGNFRSMILAPRFSSNGKRA-LISVQKDEAM-------DIYSVDLQS 291 K +G ++ K + + D A ++ V + Sbjct: 157 LAFTMLVKAEGKPLGTMPPKPDGAEWAPKVKVVDSMVYRADGAGFLEQGRHHLFVVPAEG 216 Query: 292 NATERLTNTLFINIS-ASYSPDSSQIVFESDREG-------KEQLYVMQSNGSDQKRISQ 343 +LT+ F + ++ PD S I+ ++R + L+ + + ++ Sbjct: 217 GTPRQLTSGDFDHRGQPAWLPDGSAIIIAANRNPDWETDPLNQDLHEVSVKDGTIRTLTT 276 Query: 344 DKEASYFDPVWSPQGDLIAFT-----KFSGEKFAIGVMKKDGSQERLLVE--DSNLQAPT 396 K DP SP G IAFT + + V+ + + R L E D ++ AP Sbjct: 277 RK-GPDSDPAVSPDGRYIAFTGFEDQRRGYHNSRLSVLDRRTGEIRTLTEGLDRSVDAPA 335 Query: 397 WSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETL 430 W+ G++++ S + G+ L I L+GR E L Sbjct: 336 WTDEGKAILVSYEDRGNM--VLARIGLDGRREVL 367 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 68/322 (21%) Query: 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY--- 231 RI +V + + V D +T + +SP+ + +A+ Sbjct: 111 GRIAYVQAEGG----QRQIHVRWMDTGQTATVTHLTEDPDNL-AWSPDGRWLAFTMLVKA 165 Query: 232 -------------DDEDILRVYLMDTRI----------------------DRAPKRIGNF 256 E +V ++D+ + P+++ + Sbjct: 166 EGKPLGTMPPKPDGAEWAPKVKVVDSMVYRADGAGFLEQGRHHLFVVPAEGGTPRQLTSG 225 Query: 257 R-SMILAPRFSSNGKRALISVQKDE-------AMDIYSVDLQSNATERLTNTLFINISAS 308 P + +G +I+ ++ D++ V ++ LT + + Sbjct: 226 DFDHRGQPAWLPDGSAIIIAANRNPDWETDPLNQDLHEVSVKDGTIRTLTTRKGPDSDPA 285 Query: 309 YSPDSSQIVFES---DREG--KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAF 363 SPD I F R G +L V+ + + +++ + S P W+ +G I Sbjct: 286 VSPDGRYIAFTGFEDQRRGYHNSRLSVLDRRTGEIRTLTEGLDRSVDAPAWTDEGKAILV 345 Query: 364 TKFSGEKFAIGVMKKDGSQERL--------LVEDSNLQAPTWSPSGRSLIFSRKKDG-DT 414 + + + DG +E L L + + S +GR F+ G D Sbjct: 346 SYEDRGNMVLARIGLDGRREVLAEDLGGTTLDRPYTSGSFSVSRNGR---FAYTAAGPDR 402 Query: 415 GSKLYSIDLNGRNETLINTPAY 436 + + + + G L + A Sbjct: 403 PADVAAGEKAGAARRLTDLNAD 424 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 87/273 (31%), Gaps = 34/273 (12%) Query: 188 IIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRI- 246 ++ L V+ +G R LT +P + P+ + A + D L Sbjct: 204 QGRHHLFVVPAEGGTPRQLTSGDFDHRGQPAWLPDGSAIIIAANRNPDWETDPLNQDLHE 263 Query: 247 ----DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDE-----AMDIYSVDLQSNATERL 297 D + + + P S +G+ + +D+ + +D ++ L Sbjct: 264 VSVKDGTIRTLTTRKGPDSDPAVSPDGRYIAFTGFEDQRRGYHNSRLSVLDRRTGEIRTL 323 Query: 298 TNTLFINIS-ASYSPDSSQIVFESDREGKEQLYVMQSNG------SDQKRISQDKEASYF 350 T L ++ +++ + I+ + G L + +G D + D+ + Sbjct: 324 TEGLDRSVDAPAWTDEGKAILVSYEDRGNMVLARIGLDGRREVLAEDLGGTTLDRPYTSG 383 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKK 410 S G + +K G+ RL +++ + + Sbjct: 384 SFSVSRNGRFAYTAAGPDRPADVAAGEKAGAARRLTDLNAD-------------LLGNRA 430 Query: 411 DGDTGSKLYSIDLNGRNET--LINTPAYASDPQ 441 G T + + +GR LI P + DP Sbjct: 431 LGRTEALTWKSSADGREIQGWLITPPGF--DPA 461 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 14/109 (12%) Query: 350 FDPVWSPQGDLIAFTKFSGEKFA------IGVMKKDGSQERLLVEDSNLQA-PTWSPSGR 402 DP SP G I + + + + V+ +G R L+ + WSP G Sbjct: 52 RDPQISPDGKQIVYARVGMDIMKDRAVPTLWVVDHEGRSHRPLLPGRVPASLARWSPDGG 111 Query: 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLI------NTPAYASDPQWVGF 445 + + + + G + +D G+ T+ + A++ D +W+ F Sbjct: 112 RIAYVQAEGGQRQIHVRWMD-TGQTATVTHLTEDPDNLAWSPDGRWLAF 159 >gi|242816040|ref|XP_002486690.1| NACHT and WD40 domain protein [Talaromyces stipitatus ATCC 10500] gi|218715029|gb|EED14452.1| NACHT and WD40 domain protein [Talaromyces stipitatus ATCC 10500] Length = 1813 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 117/341 (34%), Gaps = 28/341 (8%) Query: 114 GRVIKEGKDRLRVEFRLWDVKD---RKQIIGKKFFSSP----ASWRKIAHTISDDIYQSI 166 GR++ G + ++ LWD ++ + G R +A SD + Sbjct: 1117 GRLLALGSSQRKIT--LWDTATNALQQILEGHSQRIEAMEFSPDGRLLASGSSDKTVKLW 1174 Query: 167 TGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKV 226 G + S SG + D ++ S ++++ FS + + + Sbjct: 1175 DTTSGALQKSLKGHSRLQGSGSNDTKFKLWDTATGLLQQTLDSHSKMVWSVAFSLDGRLL 1234 Query: 227 AYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYS 286 A + D V + DT + + + ++ + FS +G L S D + ++ Sbjct: 1235 ASGSADR----TVKIWDTSTGALKQTLEDHSDLVSSVVFSPDG-WMLASGSNDMTVKLW- 1288 Query: 287 VDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDK 345 D + A R L S +SPD + SD + + + ++ + Sbjct: 1289 -DTSTGALRRTLGGHSEWVRSVVFSPDGRLLASGSD---DMTVKLWNTATGAPQQTLKGH 1344 Query: 346 EASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRS 403 + +SP G L+A G + + + +E +++ +SP GR Sbjct: 1345 LERVWSVAFSPDGRLLASGAEDGT---VKLWDTATGALQQTLESHLEGVRSVAFSPDGRM 1401 Query: 404 LIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 L DT KL+ +TL + ++ + Sbjct: 1402 LASGSI---DTTVKLWDTATGDLQQTLEDHLSWVQSVAFSP 1439 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 111/336 (33%), Gaps = 38/336 (11%) Query: 120 GKDRLRVEFRLWDVKDR--KQIIG------KKFFSSPASWRKIAHTISDDIYQSITGEKG 171 + +LWD +Q + + SP R +A D G Sbjct: 1403 ASGSIDTTVKLWDTATGDLQQTLEDHLSWVQSVAFSPDG-RLLASGSMDRTLNLWNTSSG 1461 Query: 172 D----FNSR-----ILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPN 222 F + F+S+ + + V D +R ++ FSP+ Sbjct: 1462 ALQQTFMGHSCVLTVAFLSDGRLLASGSENSIVRLWDTGALRQTLEGHSDLVESVAFSPD 1521 Query: 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAM 282 + +A ++D V DT + +G + + + FS +G+ S D + Sbjct: 1522 GRMLASGSHDM----TVKFWDTATGALQQTLGGHSNWVRSVVFSPDGRLLA-SGSDDMTV 1576 Query: 283 DIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 ++ + + A ++ L L S +S DS + S+ + + + ++ Sbjct: 1577 KLW--NTATGAPQQTLKGHLKRVWSVVFSLDSRLLASGSE---DGTIKIWDTATGALQQN 1631 Query: 342 SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDS--NLQAPTWSP 399 + + + +SP G ++A G + + + ++ +A +SP Sbjct: 1632 FEGRLERVWSVAFSPDGRMLASGSEDGT---VKLWDTATGTLQQTLDGHLERARAVAFSP 1688 Query: 400 SGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPA 435 GR L D KL+ G + + T Sbjct: 1689 DGRVLA---SGSKDMTVKLWDT-ATGALQQSLTTSG 1720 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 109/314 (34%), Gaps = 42/314 (13%) Query: 112 VTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG 171 + G +G +F+LWD ++ + S +A ++ Sbjct: 1185 LKGHSRLQGSGSNDTKFKLWDTATG--LLQQTLDSHSKMVWSVAFSL------------- 1229 Query: 172 DFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY 231 + R+L SG ++ + D ++ ++ FSP+ +A + Sbjct: 1230 --DGRLL------ASGSADRTVKIWDTSTGALKQTLEDHSDLVSSVVFSPDGWMLASGSN 1281 Query: 232 DDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS 291 D V L DT + +G + + FS +G+ S D + ++ + + Sbjct: 1282 DM----TVKLWDTSTGALRRTLGGHSEWVRSVVFSPDGRLLA-SGSDDMTVKLW--NTAT 1334 Query: 292 NATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 A ++ L L S ++SPD + +G +L+ + ++ + Sbjct: 1335 GAPQQTLKGHLERVWSVAFSPDGRLLA-SGAEDGTVKLW--DTATGALQQTLESHLEGVR 1391 Query: 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED--SNLQAPTWSPSGRSLIFSR 408 +SP G ++A + + + +ED S +Q+ +SP GR L Sbjct: 1392 SVAFSPDGRMLASGSIDTT---VKLWDTATGDLQQTLEDHLSWVQSVAFSPDGRLLASGS 1448 Query: 409 KKDGDTGSKLYSID 422 D L++ Sbjct: 1449 M---DRTLNLWNTS 1459 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 18/252 (7%) Query: 164 QSITGEKGDFNSRILFVSESV--VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSP 221 Q + + F + SG ++ + D ++ S + FS Sbjct: 888 QQTFEGHSHWVQSVAFSPDGRLLASGSADRTVKIWDTSTGALQQTLESHSDWVQLVTFSL 947 Query: 222 NQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA 281 + + +A + D + L DT K + +LA F +G+ S +D Sbjct: 948 DGRLLASGSRDR----TIKLWDTASGALQKTFESPLEWVLAVAFLPDGRLLA-SGSEDRT 1002 Query: 282 MDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 + ++ D + A ++ L + S + SPD +V S+ +G+ +L+ + + ++ Sbjct: 1003 VKLW--DTATGALQQTLDSHSERVRSVALSPDGRLLVSGSE-DGRVKLW--DTASAALQQ 1057 Query: 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPT--WS 398 + +SP G L+A + + + + +E + + +S Sbjct: 1058 TLESHSRGILAVAFSPDGRLLASSSQDDT---VKLWDTATGALQKTLESQSEWFWSVIFS 1114 Query: 399 PSGRSLIFSRKK 410 P GR L + Sbjct: 1115 PDGRLLALGSSQ 1126 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 102/306 (33%), Gaps = 49/306 (16%) Query: 159 SDDIYQSITGEKGDFNSRILFVSESV--VSGIIKNSLCVMDRDGANIRYLTPSRDQILFE 216 + Q ++ + F+ + SG ++ + D ++ S + + Sbjct: 967 ASGALQKTFESPLEWVLAVAFLPDGRLLASGSEDRTVKLWDTATGALQQTLDSHSERVRS 1026 Query: 217 PRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISV 276 SP+ + + + D RV L DT + + + ILA FS +G+ S Sbjct: 1027 VALSPDGRLLVSGSEDG----RVKLWDTASAALQQTLESHSRGILAVAFSPDGRLLA-SS 1081 Query: 277 QKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNG 335 +D+ + ++ D + A ++ L + S +SPD + S + ++ + + Sbjct: 1082 SQDDTVKLW--DTATGALQKTLESQSEWFWSVIFSPDGRLLALGSS---QRKITLWDTAT 1136 Query: 336 SDQKRISQDKEASYFDPVWSPQGDLIAFTK-----------------------------F 366 + ++I + +SP G L+A Sbjct: 1137 NALQQILEGHSQRIEAMEFSPDGRLLASGSSDKTVKLWDTTSGALQKSLKGHSRLQGSGS 1196 Query: 367 SGEKFAIGVMKKDGSQERLLVEDSN--LQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLN 424 + KF + + ++ + + + +S GR L D K++ Sbjct: 1197 NDTKFKLW--DTATGLLQQTLDSHSKMVWSVAFSLDGRLLA---SGSADRTVKIWDTSTG 1251 Query: 425 GRNETL 430 +TL Sbjct: 1252 ALKQTL 1257 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 20/214 (9%) Query: 203 IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILA 262 ++ + FSP+ + +A + D V + DT + + + + Sbjct: 887 LQQTFEGHSHWVQSVAFSPDGRLLASGSADR----TVKIWDTSTGALQQTLESHSDWVQL 942 Query: 263 PRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINI--SASYSPDSSQIVFES 320 FS +G+ S +D + ++ D S A ++ T + + ++ PD + S Sbjct: 943 VTFSLDGRLLA-SGSRDRTIKLW--DTASGALQK-TFESPLEWVLAVAFLPDGRLLASGS 998 Query: 321 -DREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKD 379 DR + + + ++ SP G L+ G + + Sbjct: 999 EDRT----VKLWDTATGALQQTLDSHSERVRSVALSPDGRLLVSGSEDG---RVKLWDTA 1051 Query: 380 GSQERLL--VEDSNLQAPTWSPSGRSLIFSRKKD 411 + + + A +SP GR L S + D Sbjct: 1052 SAALQQTLESHSRGILAVAFSPDGRLLASSSQDD 1085 >gi|218438157|ref|YP_002376486.1| hypothetical protein PCC7424_1167 [Cyanothece sp. PCC 7424] gi|218170885|gb|ACK69618.1| WD-40 repeat protein [Cyanothece sp. PCC 7424] Length = 1163 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 103/306 (33%), Gaps = 44/306 (14%) Query: 115 RVIKEGKDRLRVEF------RLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 V ++ +LWD+ K+I + P + Sbjct: 850 SVSFSPDGKILASGSSDKTAKLWDMTTGKEITTFEVHQHP-------------VLSVSFS 896 Query: 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY 228 G +++ SG N++ + D + P + FSP+ + +A Sbjct: 897 PDG----------KTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLAS 946 Query: 229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVD 288 + D+ V L D + + + +++ FS +GK S +D + ++ VD Sbjct: 947 GSRDN----TVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLA-SGSRDNTVKLWDVD 1001 Query: 289 LQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 + +S S+SPD + SD + + + + + + Sbjct: 1002 -TGKEITTFEGHQHLVLSVSFSPDGKILASGSD---DNTVKLWDVDTGKEISTFEGHQDV 1057 Query: 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQ--APTWSPSGRSLIF 406 +SP G ++A F + + +E E + ++SP G++L Sbjct: 1058 VMSVSFSPDGKILASGSFDKT---VKLWDLTTGKEITTFEGHQDWVGSVSFSPDGKTLA- 1113 Query: 407 SRKKDG 412 S +DG Sbjct: 1114 SGSRDG 1119 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 115/341 (33%), Gaps = 42/341 (12%) Query: 128 FRLWDVKDRKQIIGKK--------FFSSPASWRKIAHTISDD---------IYQSITGEK 170 +LW V + K+++ SP K+ T SDD I + IT + Sbjct: 785 IKLWSVLEGKELMTLTGHQNMVSNVSFSPDD--KMVATGSDDKTVKLWDIAINKEITTLR 842 Query: 171 GDFNSRILFVSESV-----VSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQK 225 G + +L VS S SG + + D + FSP+ + Sbjct: 843 G-HQNSVLSVSFSPDGKILASGSSDKTAKLWDMTTGKEITTFE