RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780549|ref|YP_003064962.1| signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)



>gnl|CDD|143949 pfam00186, DHFR_1, Dihydrofolate reductase. 
          Length = 159

 Score = 34.4 bits (80), Expect = 0.034
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 5/28 (17%)

Query: 180 AIVRNRVIAN-----WNIPSDFKRFKKL 202
           A+ +N VI       W++P D K FK L
Sbjct: 7   AVDKNGVIGKDNDLPWHLPEDLKHFKAL 34


>gnl|CDD|29264 cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces
           7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
           as a cofactor. This is an essential step in the
           biosynthesis of deoxythymidine phosphate since
           5,6,7,8-tetrahydrofolate is required to regenerate
           5,10-methylenetetrahydrofolate which is then utilized by
           thymidylate synthase. Inhibition of DHFR interrupts
           thymidilate synthesis and DNA replication, inhibitors of
           DHFR (such as Methotrexate) are used in cancer
           chemotherapy.  5,6,7,8-tetrahydrofolate also is involved
           in glycine, serine, and threonine metabolism and
           aminoacyl-tRNA biosynthesis..
          Length = 158

 Score = 32.5 bits (74), Expect = 0.14
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)

Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
           +A+  N VI       W++P D K FKK 
Sbjct: 5   VAVDENGVIGKDNKLPWHLPEDLKHFKKT 33


>gnl|CDD|36042 KOG0824, KOG0824, KOG0824, Predicted E3 ubiquitin ligase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 324

 Score = 28.1 bits (62), Expect = 2.4
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 86  SDQTKTHATENETKRSSSSKGEQALKESALLRMPVSPYDKQKI-SKATNKEQDLQGISFA 144
           S+ TK+  T   +KRS+  KG    + S+       P D++ +      K +        
Sbjct: 211 SEPTKSKPTLRRSKRSTREKGYWIYESSSDGYYRYDPKDEKYLEECYCAKMETCVMRICG 270

Query: 145 EKKSIDTVVVRPDKKELLSKVEKSSRKRIPS 175
               ++ V    ++ E   +  +    RI +
Sbjct: 271 TAMLLNFVDGVQEQVENEDRCTRRKILRIKA 301


>gnl|CDD|35817 KOG0597, KOG0597, KOG0597, Serine-threonine protein kinase FUSED
           [General function prediction only].
          Length = 808

 Score = 28.1 bits (62), Expect = 2.5
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 82  GDRFSDQTKTHATENETKRSSSSKGEQALKESALLRMPVSPYDKQKIS-KATNKEQDLQG 140
           G R SD++ +H+   ET      KG+Q L+      + V       +S K          
Sbjct: 507 GSRHSDESASHSLSFETPLDFLKKGKQELEPLNNRIITVLSGSSSGVSEKQNLIRYLETL 566

Query: 141 ISFAEKKSIDTVVVRPD---KKELLSKVEKSSRKRIPS 175
            + A+  +I T +       K  LLSK   + R +I S
Sbjct: 567 KTNAQAANILTNLPIMLLLVKVLLLSKTP-AFRVQIAS 603


>gnl|CDD|133087 cd06229, M14_Endopeptidase_I, Peptidase M14-like domain of
           Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also
           known as Gamma-D-glutamyl-meso-diaminopimelate peptidase
           I, and  Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a
           member of the M14 family of metallocarboxypeptidases
           (MCPs). However it has an exceptional type of activity
           of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic
           acid (gamma-D-Glu-Dap) bond of
           L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and
           L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala
           peptides. ENP1has a different substrate specificity and
           cellular role than MpaA (MpaA does not belong to this
           group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of
           MurNAc-tripeptide and MurNAc-tetrapeptide, as well as
           the amide bond of free tripeptide and tetrapeptide .
           ENP1 is active on spore cortex peptidoglycan, and is
           produced at stage IV of sporulation in forespore and
           spore integuments.
          Length = 255

 Score = 26.9 bits (60), Expect = 7.0
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 227 GTELVRRMLRENARKAVIKSQAFRLSPSTYKSWRNITLFFVP 268
            T L+ + + E AR      +             N+T+ FVP
Sbjct: 32  TTLLLMKFIEEYARAYENNEKLGGYDLREL--LENVTICFVP 71


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,046,052
Number of extensions: 151434
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 12
Length of query: 271
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,275,709
Effective search space: 765351911
Effective search space used: 765351911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)