RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780549|ref|YP_003064962.1| signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
Length = 126
Score = 43.9 bits (103), Expect = 1e-05
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 175 SQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRM 234
+ ++ N V W P + + V++ ++ G + G +
Sbjct: 25 TGSLDDLIVNLVSQQWRRPPSARN--GMSVEVLIEMLPDGTITNASVSRSSG-----DKP 77
Query: 235 LRENARKAVIKSQAF----RLSPSTY-KSWRNITLFFVPSKM 271
+A AV +L +T+ +R + F P +
Sbjct: 78 FDSSAVAAVRNVGRIPEMQQLPRATFDSLYRQRRIIFKPEDL 119
>d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]}
Length = 92
Score = 41.1 bits (96), Expect = 1e-04
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 179 IAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLREN 238
+++ + + + S + + +L G + +++ GG + +
Sbjct: 9 AGQIKSAIESKFYDASSYAG---KTCTLRIKLAPDGML---LDIKPEGGDPALCQAALAA 62
Query: 239 ARKAVIKSQAFRLSPSTYKSWRNITLFFVPS 269
A+ A I S + Y+ ++N L F P+
Sbjct: 63 AKLAKIPKP---PSQAVYEVFKNAPLDFKPA 90
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Lactobacillus casei [TaxId: 1582]}
Length = 162
Score = 32.8 bits (74), Expect = 0.032
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 180 AIVRNRVIAN-----WNIPSDFKRFKKL 202
A RN +I W++P D F+
Sbjct: 6 AQNRNGLIGKDGHLPWHLPDDLHYFRAQ 33
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 32.1 bits (72), Expect = 0.054
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 180 AIVRNRVIAN-----WNIPSDFKRFKKLRVKMHFQLNQKGFVLGKIN 221
A+ I W + + + FK + + + ++G+
Sbjct: 12 ALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKT 58
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 31.3 bits (70), Expect = 0.084
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 180 AIVRNRVIAN-----WNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRR 233
A V + I W+I D K F K+ + ++G+ D +G L R
Sbjct: 10 ASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNR 68
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 31.4 bits (70), Expect = 0.094
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
+A+ + I W + + FK++
Sbjct: 11 VALTTSYGIGRSNSLPWKLKKEISYFKRV 39
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Thermotoga maritima [TaxId: 2336]}
Length = 164
Score = 31.0 bits (69), Expect = 0.11
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 179 IAIVRNRVIAN----WNIPSDFKRFKKLRVKMH 207
+A+ + IA+ W+ D K F+K+ ++
Sbjct: 7 LAMDVSGKIASSVESWSSFEDRKNFRKITTEIG 39
>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 159
Score = 30.8 bits (69), Expect = 0.12
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 180 AIVRNRVIAN-----WNIPSDFKRFKK 201
A + VI W +P D F++
Sbjct: 7 AQATSGVIGRGGDIPWRLPEDQAHFRE 33
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Escherichia coli [TaxId: 562]}
Length = 159
Score = 29.3 bits (65), Expect = 0.32
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 180 AIVRNRVIAN-----WNIPSDFKRFKKL 202
A+ +RVI WN+P+D FK+
Sbjct: 7 ALAVDRVIGMENAMPWNLPADLAWFKRN 34
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 27.3 bits (60), Expect = 1.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 179 IAIV---RNRVIAN------WNIPSDFKRFKKL 202
+++ NRVI +IP+D K+++
Sbjct: 3 VSVAALAENRVIGRDGELPWPSIPADKKQYRSR 35
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 26.7 bits (58), Expect = 1.9
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 180 AIVRNRVIAN-----W-NIPSDFKRFKKLRVKMHFQLNQKGFVLGKIN 221
A+ +N I W + ++F+ F+++ + Q ++GK
Sbjct: 9 AVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKT 56
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 26.5 bits (57), Expect = 2.7
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 140 GISFAEKKSI---DTVVVRPDKKELLSKVEK 167
GI + + DTV++ + + L+K E+
Sbjct: 191 GIYIPKLGGVRIEDTVLITENGAKRLTKTER 221
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 26.0 bits (56), Expect = 3.3
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 150 DTVVVRPDKKELLSK 164
T+++RP KE++S+
Sbjct: 277 HTILLRPTCKEVVSR 291
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 25.9 bits (55), Expect = 3.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 150 DTVVVRPDKKELLSKV 165
TV+V D L +K+
Sbjct: 234 HTVIVTKDGPILTTKI 249
>d1e6ya1 a.89.1.1 (A:1284-1569) Alpha chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 286
Score = 26.2 bits (58), Expect = 3.5
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 42 DNI------YNEDYHSSKYKKIEEPVVQFKGSSQENLVRD 75
D+I Y+ DY + KY K + +V+D
Sbjct: 70 DDILDNNTYYDVDYINDKYNGAATVGKDNKVKASLEVVKD 109
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Bacteriophage T4 [TaxId: 10665]}
Length = 193
Score = 25.5 bits (55), Expect = 5.4
Identities = 4/30 (13%), Positives = 7/30 (23%), Gaps = 6/30 (20%)
Query: 179 IAIVRNRVIAN-----WN-IPSDFKRFKKL 202
+ W + D + FK
Sbjct: 14 VDGFNELAFGLGDGLPWGRVKKDLQNFKAR 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 935,133
Number of extensions: 42187
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 24
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)