BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780549|ref|YP_003064962.1| signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 271

 Score =  553 bits (1424), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MRLENGLAISMILHVMFLLLLYFNFNVQLLVPISRREMLSVDNIYNEDYHSSKYKKIEEP 60
           MRLENGLAISMILHVMFLLLLYFNFNVQLLVPISRREMLSVDNIYNEDYHSSKYKKIEEP
Sbjct: 1   MRLENGLAISMILHVMFLLLLYFNFNVQLLVPISRREMLSVDNIYNEDYHSSKYKKIEEP 60

Query: 61  VVQFKGSSQENLVRDFSVQENGDRFSDQTKTHATENETKRSSSSKGEQALKESALLRMPV 120
           VVQFKGSSQENLVRDFSVQENGDRFSDQTKTHATENETKRSSSSKGEQALKESALLRMPV
Sbjct: 61  VVQFKGSSQENLVRDFSVQENGDRFSDQTKTHATENETKRSSSSKGEQALKESALLRMPV 120

Query: 121 SPYDKQKISKATNKEQDLQGISFAEKKSIDTVVVRPDKKELLSKVEKSSRKRIPSQDAIA 180
           SPYDKQKISKATNKEQDLQGISFAEKKSIDTVVVRPDKKELLSKVEKSSRKRIPSQDAIA
Sbjct: 121 SPYDKQKISKATNKEQDLQGISFAEKKSIDTVVVRPDKKELLSKVEKSSRKRIPSQDAIA 180

Query: 181 IVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENAR 240
           IVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENAR
Sbjct: 181 IVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENAR 240

Query: 241 KAVIKSQAFRLSPSTYKSWRNITLFFVPSKM 271
           KAVIKSQAFRLSPSTYKSWRNITLFFVPSKM
Sbjct: 241 KAVIKSQAFRLSPSTYKSWRNITLFFVPSKM 271


>gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 176

 Score = 33.1 bits (74), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 180 AIVRNRVIAN-----WNIPSDFKRFKKLRVKMHFQLNQKGF-VLGKINVDVVGGTELVRR 233
           AI RN VI +     W I SD KRFK L       +  + F  +G++   + G T ++  
Sbjct: 11  AITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRL---LPGRTNII-- 65

Query: 234 MLRENARKAVIKSQA 248
           + R+N R+A +  +A
Sbjct: 66  ITRDNTRRASVNPEA 80


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 26.2 bits (56), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 148 SIDTVVVRPDKKELLSKVEKSSRKRIPSQDA-IAIVRNRVIANWN 191
           +I+T+V  P+KK L +   +  R RIP Q + +    N+++  W+
Sbjct: 54  AIETLVTTPNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTWD 98


>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 474

 Score = 25.8 bits (55), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 75  DFSVQENGDRFSDQTKTHATENET 98
           DFSV+   DRFS +T  HA E  T
Sbjct: 244 DFSVKGVLDRFSFETVLHALERAT 267


>gi|254780989|ref|YP_003065402.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score = 22.7 bits (47), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 128 ISKATNKEQDLQGISFAEKKSIDTVVV 154
           + K  N   +L+G++FA ++ +D V V
Sbjct: 1   MPKQPNVNIELEGLTFANEQRVDQVAV 27


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.131    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,328
Number of Sequences: 1233
Number of extensions: 6305
Number of successful extensions: 15
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)