HHsearch alignment for GI: 254780551 and conserved domain: PRK08990

>PRK08990 flagellar motor protein PomA; Reviewed.
Probab=99.27  E-value=6.8e-09  Score=71.75  Aligned_cols=111  Identities=14%  Similarity=0.226  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r  110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS  189 (230)
Q Consensus       110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA  189 (230)
T Consensus       118 ~e~i~~~L~~ei~~~~~r~~~~~~v~~~~g~~aPafGmiGTviGLI~mL~~l~---d-p~~iG~~mA~ALvtTlYGillA  193 (253)
T PRK08990        118 GDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMD---D-PKSIGPAMAVALLTTLYGAVLA  193 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999867899999987168879999999999998069---9-9999988899999999999999


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -99999999999999999999999999999999998
Q gi|254780551|r  190 -IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ  224 (230)
Q Consensus       190 -IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~  224 (230)
T Consensus       194 nl~~~PiA~KL~~~~~~e~~~~~~i~eGil~I~~g~  229 (253)
T PRK08990        194 NMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQ  229 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999899999999899999999987799