HHsearch alignment for GI: 254780551 and conserved domain: PRK08990
>PRK08990 flagellar motor protein PomA; Reviewed.
Probab=99.27 E-value=6.8e-09 Score=71.75 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
T Consensus 118 ~e~i~~~L~~ei~~~~~r~~~~~~v~~~~g~~aPafGmiGTviGLI~mL~~l~---d-p~~iG~~mA~ALvtTlYGillA 193 (253)
T PRK08990 118 GDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMD---D-PKSIGPAMAVALLTTLYGAVLA 193 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999867899999987168879999999999998069---9-9999988899999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99999999999999999999999999999999998
Q gi|254780551|r 190 -IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ 224 (230)
Q Consensus 190 -IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~ 224 (230)
T Consensus 194 nl~~~PiA~KL~~~~~~e~~~~~~i~eGil~I~~g~ 229 (253)
T PRK08990 194 NMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQ 229 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999899999999899999999987799