HHsearch alignment for GI: 254780551 and conserved domain: PRK12482
>PRK12482 flagellar motor protein MotA; Provisional.
Probab=99.17 E-value=8.7e-08 Score=65.16 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
T Consensus 140 ~~~i~~iLe~ei~~~~~~~~~~~~~~~~~g~~aPa~GIvgaVlGlI~~M~~l~~---~pa~LG~~IA~ALVgTfyGi~lA 216 (287)
T PRK12482 140 QHELEGILEQELSAVEEELLQPSRSLQRIAEAMPGFGICAAVLGIIITMQSIDG---SIAEIGLKVAAALVGTFLGVFIC 216 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999865689999998657333699999999999983489---99999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-99999999999999999999999999999
Q gi|254780551|r 190 IPS-SIAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 IPa-~~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
T Consensus 217 y~~~~PiA~kLk~~~~~e~~~~~~ik~~l~A~~ 249 (287)
T PRK12482 217 YCLMDPLSNAMEQEIKKELSLLECVRTVLVAHV 249 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998988999999999999899999999999972