HHsearch alignment for GI: 254780551 and conserved domain: PRK12482

>PRK12482 flagellar motor protein MotA; Provisional.
Probab=99.17  E-value=8.7e-08  Score=65.16  Aligned_cols=109  Identities=21%  Similarity=0.213  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r  110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS  189 (230)
Q Consensus       110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA  189 (230)
T Consensus       140 ~~~i~~iLe~ei~~~~~~~~~~~~~~~~~g~~aPa~GIvgaVlGlI~~M~~l~~---~pa~LG~~IA~ALVgTfyGi~lA  216 (287)
T PRK12482        140 QHELEGILEQELSAVEEELLQPSRSLQRIAEAMPGFGICAAVLGIIITMQSIDG---SIAEIGLKVAAALVGTFLGVFIC  216 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999999865689999998657333699999999999983489---99999999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999-99999999999999999999999999999
Q gi|254780551|r  190 IPS-SIAYNKFIEDSKKFAMQMEGFANEFSAIL  221 (230)
Q Consensus       190 IPa-~~~yn~l~~rv~~~~~~le~~a~~~~~~l  221 (230)
T Consensus       217 y~~~~PiA~kLk~~~~~e~~~~~~ik~~l~A~~  249 (287)
T PRK12482        217 YCLMDPLSNAMEQEIKKELSLLECVRTVLVAHV  249 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998988999999999999899999999999972