Query gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 230
No_of_seqs 119 out of 2288
Neff 6.9
Searched_HMMs 39220
Date Sun May 29 22:25:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780551.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02796 tolQ protein TolQ; I 100.0 0 0 475.0 23.0 212 12-223 1-219 (219)
2 PRK10801 colicin uptake protei 100.0 0 0 414.1 28.4 216 11-226 1-219 (227)
3 PRK10414 biopolymer transport 100.0 0 0 412.5 28.7 218 8-227 2-221 (239)
4 TIGR02797 exbB tonB-system ene 100.0 0 0 331.6 18.1 211 12-223 1-213 (213)
5 COG0811 TolQ Biopolymer transp 100.0 0 0 317.5 25.1 212 16-227 1-215 (216)
6 pfam01618 MotA_ExbB MotA/TolQ/ 100.0 4.7E-37 1.2E-41 239.2 16.6 136 80-215 3-139 (139)
7 TIGR02805 exbB2 tonB-system en 99.9 3.8E-27 9.7E-32 180.3 12.0 122 26-208 10-133 (139)
8 PRK09109 motC flagellar motor 99.3 1.5E-08 3.7E-13 69.7 23.0 110 110-223 121-231 (246)
9 PRK08456 flagellar motor prote 99.3 4.6E-09 1.2E-13 72.8 20.2 111 110-224 121-232 (257)
10 PRK08990 flagellar motor prote 99.3 6.8E-09 1.7E-13 71.8 20.9 111 110-224 118-229 (253)
11 PRK06743 flagellar motor prote 99.2 1.3E-09 3.4E-14 75.9 15.9 108 110-221 118-226 (254)
12 PRK09110 flagellar motor prote 99.2 1.3E-08 3.3E-13 70.1 19.9 109 110-221 140-249 (283)
13 PRK08124 flagellar motor prote 99.2 1.7E-08 4.4E-13 69.3 20.2 109 110-222 122-231 (263)
14 PRK12482 flagellar motor prote 99.2 8.7E-08 2.2E-12 65.2 22.7 109 110-221 140-249 (287)
15 PRK06926 flagellar motor prote 99.2 3.2E-08 8.1E-13 67.8 19.9 108 110-221 126-234 (272)
16 COG1291 MotA Flagellar motor c 99.0 1.4E-07 3.5E-12 64.0 16.9 105 110-221 122-230 (266)
17 COG0811 TolQ Biopolymer transp 97.0 0.023 5.8E-07 32.9 13.7 181 11-213 10-208 (216)
18 TIGR02956 TMAO_torS TMAO reduc 95.2 0.22 5.5E-06 27.1 8.8 39 23-61 368-409 (1052)
19 pfam12263 DUF3611 Protein of u 88.4 1.7 4.3E-05 21.8 6.5 25 15-42 12-36 (183)
20 PRK09546 zntB zinc transporter 78.6 4.5 0.00011 19.3 8.8 80 110-202 245-324 (327)
21 TIGR01477 RIFIN variant surfac 77.4 4.9 0.00012 19.1 6.5 59 139-197 162-227 (395)
22 TIGR01148 mtrC tetrahydrometha 67.4 7.8 0.0002 17.9 3.7 23 29-51 237-259 (276)
23 COG1794 RacX Aspartate racemas 65.9 7.6 0.00019 17.9 3.3 117 35-160 11-135 (230)
24 COG0598 CorA Mg2+ and Co2+ tra 63.9 9.9 0.00025 17.3 10.1 28 40-67 146-174 (322)
25 pfam09813 Coiled-coil_56 Coile 60.2 12 0.00029 16.9 4.3 32 184-215 56-87 (100)
26 pfam08006 DUF1700 Protein of u 56.2 14 0.00034 16.4 16.1 75 131-205 87-170 (181)
27 pfam02158 Neuregulin Neureguli 53.5 8.2 0.00021 17.7 1.8 22 44-65 25-47 (406)
28 pfam01544 CorA CorA-like Mg2+ 50.6 17 0.00042 15.9 8.9 44 110-153 211-254 (291)
29 KOG3227 consensus 45.4 20 0.0005 15.5 2.7 20 124-143 54-73 (231)
30 TIGR00794 kup potassium uptake 44.9 20 0.00052 15.4 6.0 58 12-82 461-518 (814)
31 KOG2766 consensus 44.9 17 0.00044 15.8 2.3 17 141-157 197-213 (336)
32 PRK10200 putative racemase; Pr 44.4 21 0.00053 15.3 5.1 108 43-159 19-134 (230)
33 TIGR01478 STEVOR variant surfa 43.9 21 0.00054 15.3 4.8 20 186-205 284-303 (315)
34 PTZ00046 rifin; Provisional 39.6 25 0.00063 14.9 3.5 13 139-151 148-160 (348)
35 TIGR02212 lolCE lipoprotein re 38.1 22 0.00057 15.1 2.0 34 172-205 321-354 (414)
36 pfam05030 SSXT SSXT protein (N 38.1 24 0.00061 15.0 2.2 21 124-144 40-60 (66)
37 PRK09174 F0F1 ATP synthase sub 35.8 29 0.00073 14.5 8.5 21 27-49 56-76 (204)
38 PHA00724 hypothetical protein 34.9 29 0.00075 14.4 4.4 55 143-201 25-79 (82)
39 COG3958 Transketolase, C-termi 34.7 29 0.00073 14.5 2.1 15 37-51 78-93 (312)
40 TIGR02923 AhaC ATP synthase A1 33.7 31 0.00079 14.3 5.9 22 113-134 291-312 (353)
41 PRK13460 F0F1 ATP synthase sub 33.0 32 0.00081 14.2 9.1 13 5-17 8-20 (173)
42 pfam05237 MoeZ_MoeB MoeZ/MoeB 32.7 20 0.00051 15.4 1.0 18 144-161 18-35 (77)
43 TIGR02417 fruct_sucro_rep D-fr 32.2 33 0.00083 14.2 3.0 54 173-226 239-315 (335)
44 pfam07271 Cytadhesin_P30 Cytad 31.5 34 0.00086 14.1 4.5 45 172-223 74-118 (279)
45 TIGR02833 spore_III_AB stage I 31.0 34 0.00087 14.0 8.2 52 44-95 25-77 (170)
46 TIGR01620 hyp_HI0043 conserved 30.8 34 0.00088 14.0 10.6 124 13-143 37-180 (299)
47 COG4672 gp18 Phage-related pro 29.8 29 0.00074 14.5 1.5 19 146-164 82-100 (231)
48 KOG1441 consensus 29.6 36 0.00093 13.9 2.6 29 177-205 285-314 (316)
49 PRK13454 F0F1 ATP synthase sub 28.2 38 0.00098 13.8 8.9 21 27-49 34-54 (181)
50 KOG3457 consensus 27.2 35 0.0009 14.0 1.5 23 20-42 58-80 (88)
51 pfam00558 Vpu Vpu protein. The 26.2 42 0.0011 13.5 6.9 27 27-53 11-37 (81)
52 PRK10364 sensor protein ZraS; 25.7 43 0.0011 13.5 10.9 15 73-87 242-256 (455)
53 PRK09921 permease DsdX; Provis 25.0 44 0.0011 13.4 4.6 12 182-193 179-190 (445)
54 PRK12460 2-keto-3-deoxyglucona 24.8 44 0.0011 13.4 3.2 24 174-197 244-267 (308)
55 PRK05415 hypothetical protein; 24.0 46 0.0012 13.3 14.3 125 12-143 74-207 (338)
56 TIGR02477 PFKA_PPi diphosphate 23.7 31 0.00078 14.3 0.7 17 213-229 372-388 (566)
57 pfam05915 DUF872 Eukaryotic pr 23.3 47 0.0012 13.2 3.1 26 139-164 41-66 (112)
58 pfam02960 K1 K1 glycoprotein. 23.2 48 0.0012 13.2 2.0 20 133-152 72-91 (130)
59 KOG2290 consensus 23.2 48 0.0012 13.2 5.0 53 144-198 567-622 (652)
60 pfam11166 DUF2951 Protein of u 22.5 42 0.0011 13.5 1.2 22 132-153 73-96 (97)
61 TIGR02918 TIGR02918 conserved 22.4 21 0.00054 15.3 -0.4 18 130-147 415-432 (511)
62 TIGR00796 livcs branched-chain 22.2 50 0.0013 13.1 4.0 29 172-205 297-325 (435)
63 PRK01770 sec-independent trans 20.8 53 0.0014 12.9 5.1 30 48-77 35-64 (171)
64 TIGR00834 ae anion exchange pr 20.8 53 0.0014 12.9 1.8 50 113-184 391-440 (987)
65 pfam06813 Nodulin-like Nodulin 20.3 39 0.00099 13.7 0.7 28 174-201 130-157 (248)
No 1
>TIGR02796 tolQ protein TolQ; InterPro: IPR014163 TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses proton motive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this entry describes TolQ specifically, as found in tol-pal operons. A close homologue, excluded from this entry, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species..
Probab=100.00 E-value=0 Score=475.01 Aligned_cols=212 Identities=42% Similarity=0.714 Sum_probs=204.5
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC--CCCHHHHHHH
Q ss_conf 69999983888799999999999999999999999999999754699999862289978999982027--8237999999
Q gi|254780551|r 12 SIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNH--HNIGLAAIFM 89 (230)
Q Consensus 12 sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~--~~~~~~~i~~ 89 (230)
|+++||.|+||+||+||++|++|||+||+||++|++.++++++..++|+++||++++++++|+.+.++ +.+|++++|+
T Consensus 1 s~~~Lf~qA~~vVk~Vml~Ll~~Si~SWaiIf~K~~~~~~~~~~~~~Fe~~FWsG~~l~~LY~~~~~~~~~~~g~~~iF~ 80 (219)
T TIGR02796 1 SILDLFLQASFVVKLVMLILLLASIISWAIIFQKLFIFRRARREAEEFEDRFWSGGDLEKLYASLSNRKDRTSGLESIFC 80 (219)
T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 97789897059999999999999999999999999999999999998887444887878999873114554576789999
Q ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Q ss_conf 9999774431025---68923389999999999999999999828712567864304999999999999999964113-5
Q gi|254780551|r 90 SAMSEWKKSCDKG---ARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGY-Y 165 (230)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~-g 165 (230)
+|++||.|..+++ ...+++..|+++|+|+....+|.++||++|++|+||||+||||||||||||||+||.+|+.+ +
T Consensus 81 aGf~Ef~r~~~~~~~s~~~~~~~~~~~~Ram~~~~~rE~~~Le~~L~fLATvGS~sPfIGLFGTVWGIM~sF~~ig~~~~ 160 (219)
T TIGR02796 81 AGFKEFSRLKSKGGRSELDPEVVIERIDRAMRVALNRELEKLESGLPFLATVGSTSPFIGLFGTVWGIMHSFQAIGGSKN 160 (219)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999875774268876686999999999999999999998861465032243222652443330547889999876764
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3016-777779999999999999999999999999999999999999999999999999
Q gi|254780551|r 166 SNNV-VSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 166 ~~~~-~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
++++ .|||||||||++||.||++|||||++||+|.++++++..++|+|++||.++++|
T Consensus 161 qatLA~VAPGIAEALiATAiGLfAAIPAViAYN~f~~~~~~i~~~~e~F~~EF~~iL~R 219 (219)
T TIGR02796 161 QATLAVVAPGIAEALIATAIGLFAAIPAVIAYNKFSTQVNKIEQRYENFADEFSSILQR 219 (219)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 34555415247899999999999998999999999999999999988899999975029
No 2
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=100.00 E-value=0 Score=414.07 Aligned_cols=216 Identities=31% Similarity=0.591 Sum_probs=203.3
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC--CCCCCHHHHHH
Q ss_conf 4699999838887999999999999999999999999999997546999998622899789999820--27823799999
Q gi|254780551|r 11 ISIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLK--NHHNIGLAAIF 88 (230)
Q Consensus 11 ~sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~--~~~~~~~~~i~ 88 (230)
||++++|.++|+++|+|||+|++||+++|+|++||++++++.++++++|++.||+..+++++++... +++..|..+++
T Consensus 1 msi~~l~~~a~~vvk~Vm~~Ll~~SI~Sw~IiieK~~~l~~~~~~~~~f~~~f~~~~~l~~l~~~~~~~~~~~~~~~~i~ 80 (227)
T PRK10801 1 MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELSRLYQESQGRRDNLSGSEQIF 80 (227)
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 98899988268969999999999999999999999999999997789999999806568999988764434567299999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999774431025689233899999999999999999998287125678643049999999999999999641135301
Q gi|254780551|r 89 MSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNN 168 (230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~ 168 (230)
.++++++.+....+.+.++...|.++++++.+..+|..++||+|++|+|++++|||+||||||||||++|.+|+..|+++
T Consensus 81 ~~g~~e~~~~~~~~~~~~~~~~e~~~ral~~~~~~e~~~le~~L~~LaTi~s~APfiGLlGTV~Gii~aF~~i~~~g~~~ 160 (227)
T PRK10801 81 YSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQAT 160 (227)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98999999875334556177899999999999999999998586076761242269999999999999999986356775
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6-777779999999999999999999999999999999999999999999999999851
Q gi|254780551|r 169 V-VSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230)
Q Consensus 169 ~-~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230)
. .+||||+|||+|||+||+|||||+++||||.+|++++..+||+|++||+++++||..
T Consensus 161 ~~~vA~GI~EALiaTA~GL~VAIPAvi~YN~~~~~i~~~~~~me~fa~el~~~l~rq~~ 219 (227)
T PRK10801 161 LQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAF 219 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78777799999999999999999999999999999999999999999999999998775
No 3
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=100.00 E-value=0 Score=412.54 Aligned_cols=218 Identities=24% Similarity=0.450 Sum_probs=198.7
Q ss_pred HHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCH-HHH
Q ss_conf 7654699999838887999999999999999999999999999997546999998622899789999820278237-999
Q gi|254780551|r 8 IMDISIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIG-LAA 86 (230)
Q Consensus 8 ~~d~sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~~~-~~~ 86 (230)
..|+|+|++|.++|++||+||++|++||+++|++||+|++.|++.+|..++|++.||++.++++..+...+.+..+ ...
T Consensus 2 ~~d~Si~~Lf~qad~vvk~VmiiLli~SI~SW~II~~K~~~~~~~~r~~~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~ 81 (239)
T PRK10414 2 QTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLDQANDIAADFGSKSLSLH 81 (239)
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHH
T ss_conf 98768999998089999999999999999999999999999999999999999998367779999888742477757999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999997744310256892338999999999999999999982871256786430499999999999999996411353
Q gi|254780551|r 87 IFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYS 166 (230)
Q Consensus 87 i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~ 166 (230)
++..+.+++... ++..+.+..++++++.+++.+..+..++++++++|+|++|+||||||||||||||++|.+|+.+|+
T Consensus 82 ~~~~~~~e~~~~--~~~~~~~~~~~~~~~~l~r~i~~~~~~le~~L~fLATigS~APFIGLfGTVWGIM~aF~~Ia~~g~ 159 (239)
T PRK10414 82 LLNEAQNELELS--EGSDDNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQT 159 (239)
T ss_pred HHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999870--477742569999999999999999999980516999997223489999999999999999986579
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 016-7777799999999999999999999999999999999999999999999999998510
Q gi|254780551|r 167 NNV-VSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230)
Q Consensus 167 ~~~-~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230)
++. ++||||+|||+|||.||+|||||+++||||.+|++++..+||+|+.||+++++||+|-
T Consensus 160 asla~VApGIaEALiaTA~GL~vAIPAv~~YN~f~~~~~~~~~~~~~Fa~e~~~~~~r~~~~ 221 (239)
T PRK10414 160 TNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGYKAMLGDVAAQVLLLQSRDLDL 221 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97898778899999999999999999999999999999999999999999999998753046
No 4
>TIGR02797 exbB tonB-system energizer ExbB; InterPro: IPR014164 This entry describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterised are involved in siderophore transport across the outer membrane..
Probab=100.00 E-value=0 Score=331.62 Aligned_cols=211 Identities=23% Similarity=0.410 Sum_probs=196.6
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 69999983888799999999999999999999999999999754699999862289978999982027823799999999
Q gi|254780551|r 12 SIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIGLAAIFMSA 91 (230)
Q Consensus 12 sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~ 91 (230)
|.|++|.++|++||.||+.|.+.|+++|+|.+-|-+.+.+.+.+.++-.+.+.++.++++..+...+.+ .+...+++++
T Consensus 1 SPwgMF~~AD~vVK~VMigLa~AS~~TWti~~aK~~El~~~~~R~~~~~~~l~~~~~L~~a~~~~~~~~-~~~~~lv~~A 79 (213)
T TIGR02797 1 SPWGMFLAADIVVKAVMIGLALASLVTWTIFIAKSVELARAKRRLKRALKALEEARTLAEAQEALEDKG-GVAAALVRAA 79 (213)
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_conf 942021415502688999999999999999999999999988999999999997761899999875037-7799999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-
Q ss_conf 997744310-256892338999999999999999999982871256786430499999999999999996411353016-
Q gi|254780551|r 92 MSEWKKSCD-KGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNV- 169 (230)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~- 169 (230)
.+|.+++.+ -.....++++|++...+++....+-.+|.||.++|+|||++|||+||||||||||++|.+|+.++++++
T Consensus 80 ~~E~~lS~~~l~~~~~~G~kERv~~~L~r~e~~~gR~~~~GtG~LATIGa~aPFVGLFGTVWGIMnsFigIs~~qTTnLA 159 (213)
T TIGR02797 80 EEELELSAAVLALSDDEGIKERVASRLERIEAAAGRRMSRGTGVLATIGATAPFVGLFGTVWGIMNSFIGISKAQTTNLA 159 (213)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999769986113357614688999999999833000036872031200125322210277588788876665220400
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 777779999999999999999999999999999999999999999999999999
Q gi|254780551|r 170 VSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 170 ~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
++||||+|||++||.||+.||||++.||+|.+.+..+..-+-+.+..+..+++|
T Consensus 160 VVAPGIAEALLATA~GLVAAIPAVvIYN~faR~i~~y~~~laDa~a~v~rLvSR 213 (213)
T TIGR02797 160 VVAPGIAEALLATALGLVAAIPAVVIYNVFARSIAGYRALLADASAQVERLVSR 213 (213)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 035237899999998899885489888658756999999999999999974049
No 5
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=317.53 Aligned_cols=212 Identities=33% Similarity=0.560 Sum_probs=195.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CHHHHHHHHHHH
Q ss_conf 998388879999999999999999999999999999975469999986228997899998202782--379999999999
Q gi|254780551|r 16 LFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHN--IGLAAIFMSAMS 93 (230)
Q Consensus 16 l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~--~~~~~i~~~~~~ 93 (230)
++.+++++++.||..+..+|+++|.+++.|.+.+....+....|++.+|+..++++....+.+..+ .+....+.+...
T Consensus 1 ~~~~~~~~~~~v~~~l~~~sv~~w~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (216)
T COG0811 1 LFLQADIVVKLVMILLLLGSVVSWPLLLLKILALALAGERLSLFEKRFWSGRSLEDAVLKLAESRDPLSALELIFASAIN 80 (216)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 96257799999999999998999999999999999999999999999813314999999877434400278899997767
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHH
Q ss_conf 774431025689233899999999999999999998287125678643049999999999999999641135301-6777
Q gi|254780551|r 94 EWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNN-VVSI 172 (230)
Q Consensus 94 ~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~-~~~a 172 (230)
++.+......+.....+|+++++++....+|..+|++++++|+||+++|||+||||||||||++|.+|+++++++ .++|
T Consensus 81 ~~~~~~~~~~~~~~~~~e~~~~al~~~~~~~~~~l~~~L~~LatI~s~aP~lGL~GTV~GIm~aF~~i~~~~~~~~a~vA 160 (216)
T COG0811 81 ELRRIERAGLKLGAPLKERARRALEEAIAREERRLERGLTLLATIGSIAPFLGLLGTVWGIMPAFIGIGAGGGADLAVVA 160 (216)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999975421266658999999999999999998867759999998311888999999999999998567899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7799999999999999999999999999999999999999999999999998510
Q gi|254780551|r 173 PGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230)
Q Consensus 173 ~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230)
+||+|||+|||.||+|||||+++||||++|+++...++|.+++++.+.++|+.+.
T Consensus 161 ~GIseAL~aTA~GL~vAIPAvi~yn~l~r~~~~~~~~~e~~~~~l~~~~~~~~~~ 215 (216)
T COG0811 161 PGISEALIATAIGLFVAIPAVVAYNVLRRKVEELLAKLEDFAEELELILRRQYDT 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899999999999999999999999999999999999999999999998221045
No 6
>pfam01618 MotA_ExbB MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.
Probab=100.00 E-value=4.7e-37 Score=239.20 Aligned_cols=136 Identities=23% Similarity=0.385 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82379999999999774431025689233899999999999999999998287125678643049999999999999999
Q gi|254780551|r 80 HNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQ 159 (230)
Q Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~ 159 (230)
....+..++..+..++.+........+....|.++++||+++.+|.+++||++++|+|++++|||+||||||||||++|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~ame~~~~~e~~~le~~l~~L~ti~~~AP~lGLlGTV~Gmi~~F~ 82 (139)
T pfam01618 3 PLSAIEILAQLGFLSFVRLGLAPLIERGAFKEFLRLALEEALDAELRKLERGLTILATIGSVAPFLGLLGTVWGIIHAFI 82 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87099999998828999987010235421489999999999999999998486999999989479899999999999999
Q ss_pred HHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 641135301-67777799999999999999999999999999999999999999999
Q gi|254780551|r 160 SIAGYYSNN-VVSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFAN 215 (230)
Q Consensus 160 ~ia~~g~~~-~~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~ 215 (230)
.++.+++.+ ..+++||+|||+||+.||+||||++++||||++|++++.+++|.|++
T Consensus 83 ~i~~~g~~~~~~~a~GI~~ALitTa~GL~vAIpa~i~yn~l~~r~~~~~~~~E~f~~ 139 (139)
T pfam01618 83 HIGQTGQADPAVVAPGISEALVATALGLFVAIPALLAYNVLKRKVEQLSLKIEAFAE 139 (139)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 887356776888876999999999999999999999999999999999999987609
No 7
>TIGR02805 exbB2 tonB-system energizer ExbB; InterPro: IPR014172 Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologues designated ExbB - see also IPR014164 from INTERPRO. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems..
Probab=99.95 E-value=3.8e-27 Score=180.27 Aligned_cols=122 Identities=21% Similarity=0.425 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999999975469999986228997899998202782379999999999774431025689
Q gi|254780551|r 26 CIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIGLAAIFMSAMSEWKKSCDKGARS 105 (230)
Q Consensus 26 ~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 105 (230)
.|+-+|++||+++++..+||+++||+.+. ++.++
T Consensus 10 ~IfgiLg~Ms~iala~viER~Lf~rki~v----------------------~~Y~~------------------------ 43 (139)
T TIGR02805 10 IIFGILGLMSLIALAYVIERYLFYRKIKV----------------------KRYED------------------------ 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------------------HCCCC------------------------
T ss_conf 99999999999999999999898740221----------------------02146------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHH-HHHHHHHHHHHHHH
Q ss_conf 2338999999999999999999982871256786430499999999999999996411353-016-77777999999999
Q gi|254780551|r 106 PIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYS-NNV-VSIPGIIESLISIL 183 (230)
Q Consensus 106 ~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~-~~~-~~a~GIseALitTa 183 (230)
.+ ++| ..+.+||.++++|+|.||++||||||+|+|-||.++|..|+ .+. ++.=|.|-||=+||
T Consensus 44 ----~~----qld-------~dl~~NlT~isiIgsNAPYiGLLGTVIGImvTFY~~G~gggdID~~~i~~gLSLALKATA 108 (139)
T TIGR02805 44 ----VE----QLD-------DDLSRNLTVISIIGSNAPYIGLLGTVIGIMVTFYEMGLGGGDIDVKAILVGLSLALKATA 108 (139)
T ss_pred ----HH----HHH-------HHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----67----899-------988532041122500255012557899999988863256676451154556128999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q gi|254780551|r 184 LGLCVSIPSSIAYNKFIEDSKKFAM 208 (230)
Q Consensus 184 ~GL~VAIPa~~~yn~l~~rv~~~~~ 208 (230)
.||.||||++++||=+-||++-...
T Consensus 109 LGlLVAIP~l~~YnallRkV~v~~~ 133 (139)
T TIGR02805 109 LGLLVAIPALVVYNALLRKVEVLRA 133 (139)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 7799998999997201205567666
No 8
>PRK09109 motC flagellar motor protein; Reviewed
Probab=99.28 E-value=1.5e-08 Score=69.75 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.+++.+|..+.....+.++.-.++.+.+..||=.|..|||.|+|.....++ + +....++|+.||+||-.|.+.|
T Consensus 121 ~~~i~~~L~~ei~~~~~r~~~~~~~~~~~g~~aPafGmiGtviGLI~mL~~l~---d-p~~lG~~mA~ALvtT~yGv~lA 196 (246)
T PRK09109 121 PESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLA---D-PSQLGSGIAVAFVATIYGVASA 196 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998277899999987267649999999999988069---9-9999988799999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-999999999999999999999999999999999
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
= ...-.-+-++.+.+......|..-.-++.+.+.
T Consensus 197 n~v~~PiA~kl~~~~~~e~~~~~~i~egil~i~~g 231 (246)
T PRK09109 197 NLLFLPVANKLKSVIARQSRYREMLVEGLVAIAEG 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998899999999999999989999999998689
No 9
>PRK08456 flagellar motor protein MotA; Validated
Probab=99.27 E-value=4.6e-09 Score=72.76 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.+++.+|..+.....+.++.-.++.+.+..||=.|.+|||.|+|...+.+. .+..+.+||+.||+||-.|.+.|
T Consensus 121 ~~~i~~~Le~ei~~~~~r~~~~~~~~~~~~~~aPafGmiGtvlGLI~~l~~l~----dp~~iG~~mA~ALvtTfyGvllA 196 (257)
T PRK08456 121 LEEIKESMEIQIEELEEYYHGAAHYWITAGETCPTMGLVGAVMGLMLALQLLD----NPAEMAAGIAGAFTATVTGIMGS 196 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999997336899999987458879999999999998069----99999989999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999999999999999999999999999998
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ 224 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~ 224 (230)
= ...-.-+-++.|.+......+-.-.-++.+.+.+
T Consensus 197 n~v~~PiA~KL~~~~~~e~~~~~~i~eGil~I~~g~ 232 (257)
T PRK08456 197 YALFGPWGHKMKAKSKDIIKEKTVILEAIKGIAEGA 232 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999789999999999999999987799
No 10
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=99.27 E-value=6.8e-09 Score=71.75 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.+++.|+..+.....|.+..-.++.+.+..||-.|..|||.|+|.....++ + +..+.+||+.||+||-.|.+.|
T Consensus 118 ~e~i~~~L~~ei~~~~~r~~~~~~v~~~~g~~aPafGmiGTviGLI~mL~~l~---d-p~~iG~~mA~ALvtTlYGillA 193 (253)
T PRK08990 118 GDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMD---D-PKSIGPAMAVALLTTLYGAVLA 193 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999867899999987168879999999999998069---9-9999988899999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99999999999999999999999999999999998
Q gi|254780551|r 190 -IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ 224 (230)
Q Consensus 190 -IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~ 224 (230)
....-..+.++.|.+......|-.-.-++.+.+.+
T Consensus 194 nl~~~PiA~KL~~~~~~e~~~~~~i~eGil~I~~g~ 229 (253)
T PRK08990 194 NMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQ 229 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999899999999899999999987799
No 11
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=99.23 E-value=1.3e-09 Score=75.92 Aligned_cols=108 Identities=12% Similarity=0.240 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.+++.|+..+.....+.++.-.++.+.+..||-.|..|||+|+|+....++ .+..+.+||+.||+||-.|.+.|
T Consensus 118 ~~~i~~~L~~ei~~~~~r~~~~~~v~~~~g~~APafGmiGTviGLI~mL~~l~----dp~~iG~~mAvAlvtTlYG~~lA 193 (254)
T PRK06743 118 EDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQ----DTSQIGTGMAVAMLTTLYGSVLA 193 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999889999999976437889999999999987269----99999899999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999999999999999999999999999
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
= ...-.-+-++.+.+......+-.-.-++.+.
T Consensus 194 nl~flPiA~KL~~~~~~e~~~~~miiEGil~I~ 226 (254)
T PRK06743 194 NMIAIPLAEKVYRGIEDLYTEKKFVIEAISELY 226 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999889999999899999999988
No 12
>PRK09110 flagellar motor protein MotA; Validated
Probab=99.21 E-value=1.3e-08 Score=70.09 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.+++.||..+.....+.++.-.++.+.+..||-+|..|||.|+|+....+. +++....++|+.||+||-.|.+.|
T Consensus 140 ~~~i~~iLe~ei~~~~~r~~~~~~~~~~~g~~aPa~GmiGtviGLI~~l~~l~---~~p~~lG~~mAvALvtT~YGv~lA 216 (283)
T PRK09110 140 PHEIEALMDEEIETHHHEAEVPAHALQTVADALPAFGIVAAVLGVVKTMGSID---QPPAVLGALIGAALVGTFLGILLA 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999998788999999987728889999999999998448---998999889999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999999999999999999999999999
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
= ...-.-+-++++.+.-....|..-.-++.+.
T Consensus 217 n~i~~PiA~kL~~~~~~e~~~~~~i~eGilai~ 249 (283)
T PRK09110 217 YGFVGPLAAKLEQVVEEDTKMYQCIKVTLLASL 249 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999889999999999999999985
No 13
>PRK08124 flagellar motor protein MotA; Validated
Probab=99.20 E-value=1.7e-08 Score=69.32 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.+++.|+..+.....+.++.-.++.+.+..||=.|..|||.|+|.....++ + +..+.++|+.||+||-.|.+.|
T Consensus 122 ~~~i~~~L~~ei~~~~~r~~~~~~v~~~~~~~aPafGmiGtvlGLI~~L~~l~---d-p~~iG~~mA~ALvtT~yGvllA 197 (263)
T PRK08124 122 AEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGLIAALGNLN---D-IEKLGHAISAAFVATLLGIFTG 197 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999987314799999987367759999999999987259---9-9999988999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-99999999999999999999999999999999
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILS 222 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~ 222 (230)
= ...-.-+-++.+.+......+..-.-++.+.+
T Consensus 198 n~~~~PiA~kl~~~~~~e~~~~~~i~egil~i~~ 231 (263)
T PRK08124 198 YVLWHPFANKLKRKSKEEIEKKYIIIEGVLAIQE 231 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999889999998999999998999999999868
No 14
>PRK12482 flagellar motor protein MotA; Provisional
Probab=99.17 E-value=8.7e-08 Score=65.16 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.+.++..||..+.....+.++.-..+.+++..+|=+|.+|||.|+|++-..+.. ++....++|+.||++|-.|.+.|
T Consensus 140 ~~~i~~iLe~ei~~~~~~~~~~~~~~~~~g~~aPa~GIvgaVlGlI~~M~~l~~---~pa~LG~~IA~ALVgTfyGi~lA 216 (287)
T PRK12482 140 QHELEGILEQELSAVEEELLQPSRSLQRIAEAMPGFGICAAVLGIIITMQSIDG---SIAEIGLKVAAALVGTFLGVFIC 216 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999865689999998657333699999999999983489---99999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-99999999999999999999999999999
Q gi|254780551|r 190 IPS-SIAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 IPa-~~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
=-- .-.-|-++.+++.-..-++....-+++..
T Consensus 217 y~~~~PiA~kLk~~~~~e~~~~~~ik~~l~A~~ 249 (287)
T PRK12482 217 YCLMDPLSNAMEQEIKKELSLLECVRTVLVAHV 249 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998988999999999999899999999999972
No 15
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=99.16 E-value=3.2e-08 Score=67.76 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|.++..||..+.....+.++.-.++.+.+..||-.|.+|||.|+|.....++ + +..+.+||+.||+||-.|.+.|
T Consensus 126 ~~~i~~iLe~ei~~~~~r~~~~~~~~~~~g~~aPafGmiGTviGLI~mL~~l~---d-p~~iG~~mAvALvtTlYGv~lA 201 (272)
T PRK06926 126 EETIRDVMDSEIAAMEERHRKGRRLFEKAGEFAPAWGMIGTLVGLVLMLKNLN---D-PHTLGPNMAVALLTTLYGTLLA 201 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998888999999987258879999999999988169---9-9999888899999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999999999999999999999999999
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
= ...-.-+-++.+.+......|-.-.-++.+.
T Consensus 202 n~~f~PiA~KL~~~~~~e~~~~~miieGil~I~ 234 (272)
T PRK06926 202 NLVFIPIAAKLEEKTESEIFIKQVMIEGIIGVQ 234 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988999999888999999899999999987
No 16
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=98.98 E-value=1.4e-07 Score=63.95 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.+.++..||..+..-.++.++.-.++.+.+..+|=+|..|||.|+|++-..+.. +....++|+-||++|-.|.+.|
T Consensus 122 ~~~I~~~me~Ei~~~ee~~~~~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~----p~~LG~~iA~Alv~T~~Gi~~a 197 (266)
T COG1291 122 PEEIEALMEEEIETMEERHEKPAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDD----PAELGALIAAALVGTLYGIFLA 197 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998753899999988458266699999999999882799----7888889999999999999999
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999----999999999999999999
Q gi|254780551|r 190 IPSSIAYNKFIEDS----KKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 IPa~~~yn~l~~rv----~~~~~~le~~a~~~~~~l 221 (230)
+..++=+.+|. +......+..-.-++++.
T Consensus 198 ---y~~~~P~a~kLk~~~~~e~~~~~~i~e~ll~i~ 230 (266)
T COG1291 198 ---YGLFGPLANKLKQKSDEEVKLKEIIIEGLLAIQ 230 (266)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---897868899998888999999999999999995
No 17
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.023 Score=32.93 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=87.3
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCCCCHHHHH
Q ss_conf 469999983888799999999999999999999999999999754699999862289---97899998202782379999
Q gi|254780551|r 11 ISIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQ---SLETVCKSLKNHHNIGLAAI 87 (230)
Q Consensus 11 ~sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~---~l~~~~~~l~~~~~~~~~~i 87 (230)
..++.++..+++ ++|+|+++++++++.+.+|.+.+.+.....++.++..+... +..............+..+.
T Consensus 10 ~~v~~~l~~~sv----~~w~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (216)
T COG0811 10 KLVMILLLLGSV----VSWPLLLLKILALALAGERLSLFEKRFWSGRSLEDAVLKLAESRDPLSALELIFASAINELRRI 85 (216)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999989----9999999999999999999999999981331499999987743440027889999776799999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 999999774431025689233899999999999999---------99999828712567864304-99999999999999
Q gi|254780551|r 88 FMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIAR---------ELEEITEKLSFLGSMSSAGL-LVGILGAVLGMMGF 157 (230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~---------e~~~l~~~l~~L~ti~s~AP-~lGLlGTV~Gmi~a 157 (230)
.....+.-. ..++..+..++..+++...+ -+....-.++.++|+-.+-| |.|+= +-.| ..
T Consensus 86 ~~~~~~~~~-------~~~e~~~~al~~~~~~~~~~l~~~L~~LatI~s~aP~lGL~GTV~GIm~aF~~i~-~~~~--~~ 155 (216)
T COG0811 86 ERAGLKLGA-------PLKERARRALEEAIAREERRLERGLTLLATIGSIAPFLGLLGTVWGIMPAFIGIG-AGGG--AD 155 (216)
T ss_pred HHHHHCCCC-------CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC--CC
T ss_conf 975421266-------6589999999999999999988677599999983118889999999999999985-6789--99
Q ss_pred HHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 99641135301-6777779999999999999999999999----99999999999999999
Q gi|254780551|r 158 FQSIAGYYSNN-VVSIPGIIESLISILLGLCVSIPSSIAY----NKFIEDSKKFAMQMEGF 213 (230)
Q Consensus 158 F~~ia~~g~~~-~~~a~GIseALitTa~GL~VAIPa~~~y----n~l~~rv~~~~~~le~~ 213 (230)
-..++..=+.. ..++-|.-.|-. |..++=.+ +-...+.+...++++..
T Consensus 156 ~a~vA~GIseAL~aTA~GL~vAIP--------Avi~yn~l~r~~~~~~~~~e~~~~~l~~~ 208 (216)
T COG0811 156 LAVVAPGISEALIATAIGLFVAIP--------AVVAYNVLRRKVEELLAKLEDFAEELELI 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987899999999999999999--------99999999999999999999999999999
No 18
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=95.17 E-value=0.22 Score=27.12 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf 799999999999999999999999999999---754699999
Q gi|254780551|r 23 AVKCIITLLFIFSILSWSVIIQKSVNFITL---RRQFREFEQ 61 (230)
Q Consensus 23 ~v~~Vm~~L~i~Si~~~~iiier~~~~~~~---~~~~~~f~~ 61 (230)
.+|.+++++.+++++.+..|++|++|=+=+ .+.++...+
T Consensus 368 ~aq~~L~~~g~L~L~~~~~i~WrvVYrsv~~rL~q~t~Al~r 409 (1052)
T TIGR02956 368 VAQLGLLILGLLGLVILVFIMWRVVYRSVILRLNQHTQALLR 409 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999999999999998777660555678999999
No 19
>pfam12263 DUF3611 Protein of unknown function (DUF3611). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=88.36 E-value=1.7 Score=21.80 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=15.9
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998388879999999999999999999
Q gi|254780551|r 15 ALFMQMGLAVKCIITLLFIFSILSWSVI 42 (230)
Q Consensus 15 ~l~~~gg~~v~~Vm~~L~i~Si~~~~ii 42 (230)
..+..-||+. +|.=+++.+++-.+.
T Consensus 12 ~~lr~~Gwi~---FW~QlvLgvVs~~iL 36 (183)
T pfam12263 12 RGLRLLGWIG---FWIQLVLGVVSALIL 36 (183)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 9999989999---999999999999999
No 20
>PRK09546 zntB zinc transporter; Reviewed
Probab=78.58 E-value=4.5 Score=19.28 Aligned_cols=80 Identities=18% Similarity=0.057 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
.|+..-..|+..+....++++++.+|+.++++.==++++--+.|| =|.+|-+.+..- |-+ -.+|+.++
T Consensus 245 rer~~~l~d~~~~~~se~~N~~~~~Lsvia~IFLPltfltGl~GM--N~~gmPg~~~~~-----gf~-----~~~~~m~~ 312 (327)
T PRK09546 245 IARTGVMADEIAQVMAEALNRRTYTMSLMAMVFLPSTFLTGLFGV--NLGGIPGGGWPF-----GFS-----IFCILLVV 312 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCH-----HHH-----HHHHHHHH
T ss_conf 999999999999999999999999999999999879998722146--779998878860-----799-----99999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780551|r 190 IPSSIAYNKFIED 202 (230)
Q Consensus 190 IPa~~~yn~l~~r 202 (230)
+ ++..|-||++|
T Consensus 313 ~-~~~~~~~frr~ 324 (327)
T PRK09546 313 L-IGGVAWWLKRS 324 (327)
T ss_pred H-HHHHHHHHHHC
T ss_conf 9-99999999983
No 21
>TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the rifin family of variant surface antigens, encoded by the rif (short for "repetetive interspersed family") genes. This is the largest variant surface antigen family in P. falciparum, with roughly 150 genes present in the genome of this parasite . The function of these proteins is not yet known, but rifins are strongly immunogenic and high levels of anti-rifin antibodies are correlated with rapid parasite clearance and asymptomatic infections . .
Probab=77.43 E-value=4.9 Score=19.08 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHCCCCC----HHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHH
Q ss_conf 6430499999999999-9999964113530----16777779999999-9999999999999-999
Q gi|254780551|r 139 SSAGLLVGILGAVLGM-MGFFQSIAGYYSN----NVVSIPGIIESLIS-ILLGLCVSIPSSI-AYN 197 (230)
Q Consensus 139 ~s~AP~lGLlGTV~Gm-i~aF~~ia~~g~~----~~~~a~GIseALit-Ta~GL~VAIPa~~-~yn 197 (230)
|++||=+||||=|+=- +.....-+..-.. ..+.+.|+.++--+ ++.|.-++|-.+= -+.
T Consensus 162 GgVaP~~Gl~ggi~~~a~~~W~~aa~aAA~~~A~~ag~~~a~~aG~~Ag~~~G~~~vI~~l~~~~~ 227 (395)
T TIGR01477 162 GGVAPAVGLLGGIAVAAVVGWKQAALAAAKELAKKAGAAAAIAAGIKAGIAVGINVVIEGLKKILG 227 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 256898999999999999876599999999999999999999999999999999999999999987
No 22
>TIGR01148 mtrC tetrahydromethanopterin S-methyltransferase, subunit C; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane.
Probab=67.39 E-value=7.8 Score=17.85 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254780551|r 29 TLLFIFSILSWSVIIQKSVNFIT 51 (230)
Q Consensus 29 ~~L~i~Si~~~~iiier~~~~~~ 51 (230)
|+-.+.+++.|.|.|.||+.+.+
T Consensus 237 Wl~~L~G~~~W~v~F~kf~~l~k 259 (276)
T TIGR01148 237 WLNILVGAIIWLVAFSKFVALSK 259 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999979
No 23
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=65.92 E-value=7.6 Score=17.94 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999999999999975469999986228997899998202782379999999999774431025689233899999
Q gi|254780551|r 35 SILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRID 114 (230)
Q Consensus 35 Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~ 114 (230)
|--|-...+.|+....+.++.....-.....+.+..+.....+..+....+.++..+.+.+.+...+...-+......+-
T Consensus 11 gpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~ 90 (230)
T COG1794 11 GPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVA 90 (230)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 87889999999999999983786762331226886559998736765658999999999999659998997077378999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998287125678643--------0499999999999999996
Q gi|254780551|r 115 RMMDVAIARELEEITEKLSFLGSMSSA--------GLLVGILGAVLGMMGFFQS 160 (230)
Q Consensus 115 ~~le~~~~~e~~~l~~~l~~L~ti~s~--------AP~lGLlGTV~Gmi~aF~~ 160 (230)
+.++.+ -++++|..+=.+ +-=+|||||.--|-+.|..
T Consensus 91 d~iq~~---------~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~ 135 (230)
T COG1794 91 DDIQKA---------VGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYR 135 (230)
T ss_pred HHHHHH---------CCCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 999985---------499733078999999876588615886130057768999
No 24
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=63.91 E-value=9.9 Score=17.25 Aligned_cols=28 Identities=7% Similarity=0.236 Sum_probs=14.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999-9999754699999862289
Q gi|254780551|r 40 SVIIQKSVN-FITLRRQFREFEQLFWSGQ 67 (230)
Q Consensus 40 ~iiier~~~-~~~~~~~~~~f~~~~~~~~ 67 (230)
.-+.+++.. +....+..+.+++......
T Consensus 146 d~i~d~~~~~le~i~~~~~~ie~~l~~~~ 174 (322)
T COG0598 146 DAIVDNYFPVLEQIEDELEAIEDQLLAST 174 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999997365
No 25
>pfam09813 Coiled-coil_56 Coiled-coil domain-containing protein 56. Members of this family of proteins have no known function.
Probab=60.21 E-value=12 Score=16.85 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999
Q gi|254780551|r 184 LGLCVSIPSSIAYNKFIEDSKKFAMQMEGFAN 215 (230)
Q Consensus 184 ~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~ 215 (230)
.+|...+.++.+|+++.-+-+++.+++|.-+.
T Consensus 56 l~iGa~VlgIY~Yt~ySV~QE~flDdlee~~K 87 (100)
T pfam09813 56 LAIGGLVLGIYGYTFYSVAQEKFLDELEEEAK 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88878999877654423249988888652789
No 26
>pfam08006 DUF1700 Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and two putative membrane proteins.
Probab=56.17 E-value=14 Score=16.44 Aligned_cols=75 Identities=13% Similarity=-0.061 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87125678643049999999999999999641135---------301677777999999999999999999999999999
Q gi|254780551|r 131 KLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYY---------SNNVVSIPGIIESLISILLGLCVSIPSSIAYNKFIE 201 (230)
Q Consensus 131 ~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g---------~~~~~~a~GIseALitTa~GL~VAIPa~~~yn~l~~ 201 (230)
+|++++.+.-..|++++.+++.+.+-+.-.+-.++ .+......++..++..+..||++.+-.+..-.++.+
T Consensus 87 gL~~~~~~ivl~~li~~~~~il~l~i~~~~li~s~~il~~~~i~~g~~~~~~~~f~~i~~~GlGlll~~~~~~l~k~~~~ 166 (181)
T pfam08006 87 GLGLFNFIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIGLFGLGLLLAIVMYYLTKLLYR 166 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999989999999997023788999999999999999999999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780551|r 202 DSKK 205 (230)
Q Consensus 202 rv~~ 205 (230)
-.-+
T Consensus 167 l~i~ 170 (181)
T pfam08006 167 LLVK 170 (181)
T ss_pred HHHH
T ss_conf 9999
No 27
>pfam02158 Neuregulin Neuregulin family.
Probab=53.52 E-value=8.2 Score=17.74 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=11.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHC
Q ss_conf 9999-999997546999998622
Q gi|254780551|r 44 QKSV-NFITLRRQFREFEQLFWS 65 (230)
Q Consensus 44 er~~-~~~~~~~~~~~f~~~~~~ 65 (230)
-+.+ .+-|.||+-++..+.+++
T Consensus 25 vCVV~AYCKTKKQRKkmH~hLrQ 47 (406)
T pfam02158 25 MCVVDAYCKTKKQRKKLHDRLRQ 47 (406)
T ss_pred EEEEHHHHCCHHHHHHHHHHHHH
T ss_conf 36621443138889999999986
No 28
>pfam01544 CorA CorA-like Mg2+ transporter protein. The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast, which is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.
Probab=50.62 E-value=17 Score=15.90 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLG 153 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~G 153 (230)
.|.++...+........++++-+..|..++.+-=-+-+++.++|
T Consensus 211 ~~~~~~l~~~~~s~~s~~~N~~mk~LTiis~iflP~tlI~GiyG 254 (291)
T pfam01544 211 RERLRSLQDAYLSLLSNRLNRIMKVLTVVSAIFLPLTLITGIYG 254 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999986630
No 29
>KOG3227 consensus
Probab=45.38 E-value=20 Score=15.46 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=15.7
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999828712567864304
Q gi|254780551|r 124 ELEEITEKLSFLGSMSSAGL 143 (230)
Q Consensus 124 e~~~l~~~l~~L~ti~s~AP 143 (230)
.-..|.|+|.||+||+-.-|
T Consensus 54 yq~~LhrNL~YLA~iAD~qp 73 (231)
T KOG3227 54 YQALLHRNLVYLATIADSQP 73 (231)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999874899999861488
No 30
>TIGR00794 kup potassium uptake protein; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) , yeast (HAK) , and plant (AtKT) sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0006813 potassium ion transport, 0016020 membrane.
Probab=44.95 E-value=20 Score=15.37 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=31.5
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 69999983888799999999999999999999999999999754699999862289978999982027823
Q gi|254780551|r 12 SIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNI 82 (230)
Q Consensus 12 sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 82 (230)
|.+.=+.+||| +||.+..+......++|+-..|| ...+++ +..+++++....++++++
T Consensus 461 s~l~K~~eGgW------~Pl~ls~~~~~~m~~W~~~~~r~---~~~~~e----~~~~~~~l~~~~K~~PPq 518 (814)
T TIGR00794 461 SNLKKVPEGGW------LPLLLSGVFMSLMLLWRYGRSRK---LRADLE----HRVSISELIAELKKEPPQ 518 (814)
T ss_pred HHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----CCCCHHHHHHHHCCCCCC
T ss_conf 99987506624------78999999999997633687677---787752----578777652866378887
No 31
>KOG2766 consensus
Probab=44.87 E-value=17 Score=15.81 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 30499999999999999
Q gi|254780551|r 141 AGLLVGILGAVLGMMGF 157 (230)
Q Consensus 141 ~AP~lGLlGTV~Gmi~a 157 (230)
.-.|+||||++++.|+.
T Consensus 197 lm~~lgLfGaIIsaIQ~ 213 (336)
T KOG2766 197 LMGFLGLFGAIISAIQF 213 (336)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987
No 32
>PRK10200 putative racemase; Provisional
Probab=44.41 E-value=21 Score=15.32 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997546999998622899789999820278237999999999977443102568923389999999999999
Q gi|254780551|r 43 IQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIA 122 (230)
Q Consensus 43 ier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~ 122 (230)
..|+.....++......-....++.+..+........+..+...++..+.+.+.+...+-..-+....-..-+.++..
T Consensus 19 y~~i~~~t~a~~~~~h~~~l~~~s~~~~~~~~~~~~~~~d~~~~~L~~~a~~Le~aGAd~i~i~cNTaH~~~d~i~~~-- 96 (230)
T PRK10200 19 YRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESR-- 96 (230)
T ss_pred HHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH--
T ss_conf 999999998871897887211227885779998867996539999999999999849999996474789999999975--
Q ss_pred HHHHHHHHCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q ss_conf 999999828712567864304--------9999999999999999
Q gi|254780551|r 123 RELEEITEKLSFLGSMSSAGL--------LVGILGAVLGMMGFFQ 159 (230)
Q Consensus 123 ~e~~~l~~~l~~L~ti~s~AP--------~lGLlGTV~Gmi~aF~ 159 (230)
-++++|+.+-.++- =+|||||=.=|=.-|.
T Consensus 97 -------~~iP~l~i~~~t~~~i~~~g~~~VglLgT~~Tm~~~~Y 134 (230)
T PRK10200 97 -------CSLPFLHIADATGRAIAGAGMTRVALLGTRYTMEQDFY 134 (230)
T ss_pred -------CCCCEEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf -------69987318999999999759985898514566661688
No 33
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=43.93 E-value=21 Score=15.28 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780551|r 186 LCVSIPSSIAYNKFIEDSKK 205 (230)
Q Consensus 186 L~VAIPa~~~yn~l~~rv~~ 205 (230)
|++.|.-++.|=||.+|-++
T Consensus 284 i~L~V~LIiLYIWLYrRRK~ 303 (315)
T TIGR01478 284 IILTVVLIILYIWLYRRRKK 303 (315)
T ss_pred HHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999998888564030
No 34
>PTZ00046 rifin; Provisional
Probab=39.63 E-value=25 Score=14.88 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6430499999999
Q gi|254780551|r 139 SSAGLLVGILGAV 151 (230)
Q Consensus 139 ~s~AP~lGLlGTV 151 (230)
|.+||=+||||.+
T Consensus 148 GgVap~~Gllggi 160 (348)
T PTZ00046 148 GGVAPSWGLLGGL 160 (348)
T ss_pred CCCCCCCCCCCCH
T ss_conf 6526332311305
No 35
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family; InterPro: IPR011925 This entry describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC .; GO: 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=38.15 E-value=22 Score=15.15 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7779999999999999999999999999999999
Q gi|254780551|r 172 IPGIIESLISILLGLCVSIPSSIAYNKFIEDSKK 205 (230)
Q Consensus 172 a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~ 205 (230)
.-|..-+.+=|.+|.++++-.-.==+-+.+-++.
T Consensus 321 ~~G~~~G~~GtllG~i~Gv~~~lN~~~i~~~~e~ 354 (414)
T TIGR02212 321 VQGLLIGVIGTLLGVILGVLLALNLTTIINFIEW 354 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7879999999999999999999989999999988
No 36
>pfam05030 SSXT SSXT protein (N-terminal region). The SSXT or SS18 protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2.
Probab=38.11 E-value=24 Score=14.97 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=16.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999998287125678643049
Q gi|254780551|r 124 ELEEITEKLSFLGSMSSAGLL 144 (230)
Q Consensus 124 e~~~l~~~l~~L~ti~s~AP~ 144 (230)
--..|.|+|.||++|+-..|-
T Consensus 40 yQ~~LhrNLvYLAtiAD~~~~ 60 (66)
T pfam05030 40 YQQILHRNLVYLATLADPNTN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999989999998246844
No 37
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=35.76 E-value=29 Score=14.51 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254780551|r 27 IITLLFIFSILSWSVIIQKSVNF 49 (230)
Q Consensus 27 Vm~~L~i~Si~~~~iiier~~~~ 49 (230)
|+|+++.+++ +++++.|++.=
T Consensus 56 ifWL~I~F~~--lY~~~sk~~lP 76 (204)
T PRK09174 56 LLWLAITFGL--FYLFLSRVILP 76 (204)
T ss_pred HHHHHHHHHH--HHHHHHHHHHH
T ss_conf 9999999999--99999999760
No 38
>PHA00724 hypothetical protein
Probab=34.90 E-value=29 Score=14.42 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999999999999999641135301677777999999999999999999999999999
Q gi|254780551|r 143 LLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVSIPSSIAYNKFIE 201 (230)
Q Consensus 143 P~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VAIPa~~~yn~l~~ 201 (230)
-++-|.|+|.|.|.-.--..+..+.. -.++-.+-|.+.-+.||+- --+++||++.
T Consensus 25 ylvnlmgfvmgtigflvfvqn~tdi~-fs~stfyl~~~pl~~glvn---~afffnwlre 79 (82)
T PHA00724 25 YLVNLMGFVMGTIGFLVFVQNYTDIT-FSASTFYLAFLPLAFGLVN---FAFFFNWLRE 79 (82)
T ss_pred HHHHHHHHHHHHHHHEEEECCCCEEE-EECCHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf 99999999997856415760673178-8624359999999999989---9999999877
No 39
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=34.65 E-value=29 Score=14.51 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=6.6
Q ss_pred HHHHHHHH-HHHHHHH
Q ss_conf 99999999-9999999
Q gi|254780551|r 37 LSWSVIIQ-KSVNFIT 51 (230)
Q Consensus 37 ~~~~iiie-r~~~~~~ 51 (230)
.+++.+.. |.|..-|
T Consensus 78 ~tfa~F~s~Ra~EQir 93 (312)
T COG3958 78 STFAAFLSRRAWEQIR 93 (312)
T ss_pred ECHHHHHHHHHHHHHH
T ss_conf 4158998777999999
No 40
>TIGR02923 AhaC ATP synthase A1, C subunit; InterPro: IPR014272 A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents subunit C of the A1 component. More information about this protein can be found at Protein of the Month: ATP Synthases ..
Probab=33.67 E-value=31 Score=14.30 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999999999999828712
Q gi|254780551|r 113 IDRMMDVAIARELEEITEKLSF 134 (230)
Q Consensus 113 i~~~le~~~~~e~~~l~~~l~~ 134 (230)
+|++++....+...++.++-|+
T Consensus 291 ~E~~ld~~l~~~~~~ls~~~Pl 312 (353)
T TIGR02923 291 FERALDEYLIKMATKLSLRYPL 312 (353)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9899999999988886325995
No 41
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=32.97 E-value=32 Score=14.23 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=8.2
Q ss_pred HHHHHHCCHHHHH
Q ss_conf 0357654699999
Q gi|254780551|r 5 GLAIMDISIFALF 17 (230)
Q Consensus 5 ~~~~~d~sl~~l~ 17 (230)
|+.|++.|.+.+|
T Consensus 8 ~~~~l~~n~~~~i 20 (173)
T PRK13460 8 GLSLLDVNPGLVV 20 (173)
T ss_pred CCCCCCCCHHHHH
T ss_conf 6775889877999
No 42
>pfam05237 MoeZ_MoeB MoeZ/MoeB domain. This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved.
Probab=32.74 E-value=20 Score=15.45 Aligned_cols=18 Identities=39% Similarity=0.842 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999964
Q gi|254780551|r 144 LVGILGAVLGMMGFFQSI 161 (230)
Q Consensus 144 ~lGLlGTV~Gmi~aF~~i 161 (230)
-.|.+|+|.|||.++++.
T Consensus 18 ~~GVlg~~~givgslqa~ 35 (77)
T pfam05237 18 TAGVLGPVVGTIGSLQAL 35 (77)
T ss_pred HCCCCHHHHHHHHHHHHH
T ss_conf 148452189999999999
No 43
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor; InterPro: IPR012781 Members of this family belong the lacI helix-turn-helix family of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterised members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.; GO: 0003677 DNA binding, 0006355 regulation of transcription DNA-dependent, 0009750 response to fructose stimulus, 0045449 regulation of transcription.
Probab=32.20 E-value=33 Score=14.16 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999999999999-----------------------99999999999999999999999999999851
Q gi|254780551|r 173 PGIIESLISILLGLCVSIPSSI-----------------------AYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230)
Q Consensus 173 ~GIseALitTa~GL~VAIPa~~-----------------------~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230)
||.=.||+||..+|.=++-=++ .|++|.-+|+.+..+.+..|...++++.+-.|
T Consensus 239 grlP~AlfTtSy~LLeGVld~~~~~~~mdl~L~sql~LATFgDn~LLDfLp~~i~~~~Q~h~q~A~~~~el~l~~~~ 315 (335)
T TIGR02417 239 GRLPDALFTTSYTLLEGVLDVLLERPKMDLLLDSQLHLATFGDNELLDFLPLPINSVAQQHRQLAEQALELALAAID 315 (335)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87867899999998778999861378877320355402034625565016882032057707899999999999861
No 44
>pfam07271 Cytadhesin_P30 Cytadhesin P30/P32. This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localized on the tip organelle. It is thought that it is important in cytadherence and virulence.
Probab=31.54 E-value=34 Score=14.09 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7779999999999999999999999999999999999999999999999999
Q gi|254780551|r 172 IPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 172 a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
++|-.-.-++-.+||.+.||-+ ++|-+++..+-|+ -.++.+.+.|
T Consensus 74 ~~~~G~~alaiiLGL~IGlPIv------KrKEk~lleEkE~-~eqmaEqL~~ 118 (279)
T pfam07271 74 AGGFGFSALAIILGLAIGLPIV------KRKEKRLLEEKER-QEQMAEQLQR 118 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 3420189999998742175123------3688887888899-9999999988
No 45
>TIGR02833 spore_III_AB stage III sporulation protein AB; InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species..
Probab=30.97 E-value=34 Score=14.03 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999975469999986-22899789999820278237999999999977
Q gi|254780551|r 44 QKSVNFITLRRQFREFEQLF-WSGQSLETVCKSLKNHHNIGLAAIFMSAMSEW 95 (230)
Q Consensus 44 er~~~~~~~~~~~~~f~~~~-~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~~ 95 (230)
+|.+.+|+.+.....++... ....++.++.+...+..+.|...+|...-..+
T Consensus 25 ~R~~~Lr~l~~AL~~L~~EI~Y~~TPL~ea~~~iA~~~~~pv~~lF~~~s~~L 77 (170)
T TIGR02833 25 ERPRQLRQLKNALQSLEAEIVYGHTPLPEAFKKIAKKSPKPVNKLFESASERL 77 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 87999999999999999730178764689999999741524899999999872
No 46
>TIGR01620 hyp_HI0043 conserved hypothetical protein TIGR01620; InterPro: IPR006507 These are putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25 0dentity between them. .
Probab=30.82 E-value=34 Score=14.02 Aligned_cols=124 Identities=14% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-CCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999998388879999999999999999999999999999975469---9999862-289978999982027823799999
Q gi|254780551|r 13 IFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFR---EFEQLFW-SGQSLETVCKSLKNHHNIGLAAIF 88 (230)
Q Consensus 13 l~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~---~f~~~~~-~~~~l~~~~~~l~~~~~~~~~~i~ 88 (230)
+++.|++.+|+...-.+.+++.-...+.-++--++.+.|.++... +-++... ++....+.. +-++..-.+++
T Consensus 37 i~n~~~~~dW~~l~~~~a~~~ii~ag~~~v~~E~rrl~RL~~r~~~~~~a~~~~l~~~~k~g~vf----svhnaeks~i~ 112 (299)
T TIGR01620 37 IRNLFQRSDWVALTATIALIVIILAGVAEVVREWRRLVRLKKRESLKADAEDLLLDKSVKKGRVF----SVHNAEKSKIL 112 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE----EECCHHHHHHH
T ss_conf 99875244699999999999999999889998999988899999999999999985178975235----53004677999
Q ss_pred H-------------HHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9-------------99997744310256892338---9999999999999999999828712567864304
Q gi|254780551|r 89 M-------------SAMSEWKKSCDKGARSPIGI---QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGL 143 (230)
Q Consensus 89 ~-------------~~~~~~~~~~~~~~~~~~~~---~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP 143 (230)
. .+...|+....+....++-+ ...+...+|++..+++.+..+.-++ +.+++|
T Consensus 113 c~~~A~~~g~~~~~p~~~~w~~~~ne~~~~~e~~~L~~r~vl~~lDaQAr~lIs~sa~~s~v---~~AvSP 180 (299)
T TIGR01620 113 CRKLAKLSGLEETAPALAAWKETLNEVIDGREVIELYEREVLVSLDAQARKLISKSAAESSV---VVAVSP 180 (299)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEE---EEEECH
T ss_conf 99999871732476689999988754307668999986302754458999999851114201---133156
No 47
>COG4672 gp18 Phage-related protein [Function unknown]
Probab=29.76 E-value=29 Score=14.45 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999964113
Q gi|254780551|r 146 GILGAVLGMMGFFQSIAGY 164 (230)
Q Consensus 146 GLlGTV~Gmi~aF~~ia~~ 164 (230)
-|+|+|+||-..|+++-+.
T Consensus 82 Nl~G~Vt~m~~~~~~LVGa 100 (231)
T COG4672 82 NLFGLVTGMAEDLQSLVGA 100 (231)
T ss_pred ECCHHHHHHHHHHHHHHCC
T ss_conf 0110679999986632073
No 48
>KOG1441 consensus
Probab=29.55 E-value=36 Score=13.89 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=24.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-99999999999999999999999999
Q gi|254780551|r 177 ESL-ISILLGLCVSIPSSIAYNKFIEDSKK 205 (230)
Q Consensus 177 eAL-itTa~GL~VAIPa~~~yn~l~~rv~~ 205 (230)
+.+ ...++|..+||-.++.|++.+.+.++
T Consensus 285 ~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441 285 NPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 888545578799999999999997400113
No 49
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.25 E-value=38 Score=13.75 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254780551|r 27 IITLLFIFSILSWSVIIQKSVNF 49 (230)
Q Consensus 27 Vm~~L~i~Si~~~~iiier~~~~ 49 (230)
|+|.++.+.+ +++++.|+..=
T Consensus 34 iFWl~i~F~i--ly~vl~k~~lP 54 (181)
T PRK13454 34 IFWLLVTLVA--IYFVLTRVALP 54 (181)
T ss_pred HHHHHHHHHH--HHHHHHHHHHH
T ss_conf 9999999999--99999999998
No 50
>KOG3457 consensus
Probab=27.16 E-value=35 Score=13.97 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88879999999999999999999
Q gi|254780551|r 20 MGLAVKCIITLLFIFSILSWSVI 42 (230)
Q Consensus 20 gg~~v~~Vm~~L~i~Si~~~~ii 42 (230)
=|+++-.||-+.++.||+++-|+
T Consensus 58 V~PvvVLvmSvgFIasV~~LHi~ 80 (88)
T KOG3457 58 VDPVVVLVMSVGFIASVFALHIW 80 (88)
T ss_pred ECCEEEHHHHHHHHHHHHHHHHH
T ss_conf 07864314368999999999999
No 51
>pfam00558 Vpu Vpu protein. The Vpu protein contains an N-terminal transmembrane spanning region and a C-terminal cytoplasmic region. The HIV-1 Vpu protein stimulates virus production by enhancing the release of viral particles from infected cells. The VPU protein binds specifically to CD4.
Probab=26.17 E-value=42 Score=13.53 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999997
Q gi|254780551|r 27 IITLLFIFSILSWSVIIQKSVNFITLR 53 (230)
Q Consensus 27 Vm~~L~i~Si~~~~iiier~~~~~~~~ 53 (230)
...+++++.++-|++.+-.+...++-+
T Consensus 11 ~l~v~liiaIvVW~iv~~ey~k~~rqr 37 (81)
T pfam00558 11 ALIVALIINIVVWTIVYREYRKIKKQR 37 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 52
>PRK10364 sensor protein ZraS; Provisional
Probab=25.75 E-value=43 Score=13.48 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=6.7
Q ss_pred HHHHCCCCCCHHHHH
Q ss_conf 998202782379999
Q gi|254780551|r 73 CKSLKNHHNIGLAAI 87 (230)
Q Consensus 73 ~~~l~~~~~~~~~~i 87 (230)
...+..+-.+|+..|
T Consensus 242 AAgVAHEIRNPLtsI 256 (455)
T PRK10364 242 AAGVAHEIRNPLSSI 256 (455)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999899885649999
No 53
>PRK09921 permease DsdX; Provisional
Probab=25.04 E-value=44 Score=13.40 Aligned_cols=12 Identities=42% Similarity=0.622 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780551|r 182 ILLGLCVSIPSS 193 (230)
Q Consensus 182 Ta~GL~VAIPa~ 193 (230)
...|++||||+.
T Consensus 179 il~Glivaip~~ 190 (445)
T PRK09921 179 IVYGLLVGLMAS 190 (445)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 54
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=24.76 E-value=44 Score=13.37 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999999999
Q gi|254780551|r 174 GIIESLISILLGLCVSIPSSIAYN 197 (230)
Q Consensus 174 GIseALitTa~GL~VAIPa~~~yn 197 (230)
|+.-+=+.|.+|-.||.|+.++-.
T Consensus 244 g~aG~A~sstAGnAvatPa~vA~~ 267 (308)
T PRK12460 244 GIAGAAASSTAGNAVATPLAIAQA 267 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 722468977777877538999874
No 55
>PRK05415 hypothetical protein; Provisional
Probab=24.03 E-value=46 Score=13.28 Aligned_cols=125 Identities=7% Similarity=0.078 Sum_probs=59.4
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCHHHHHHHHCC---CCCCHHHH
Q ss_conf 69999983888799999999999999999999999999999754699--99986228997899998202---78237999
Q gi|254780551|r 12 SIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFRE--FEQLFWSGQSLETVCKSLKN---HHNIGLAA 86 (230)
Q Consensus 12 sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~--f~~~~~~~~~l~~~~~~l~~---~~~~~~~~ 86 (230)
.+.+.|++..|++......+.+..+....+++--++.++|.++..+. --+....+.+..++...|.+ .-..+
T Consensus 74 ~l~~~~~~~~wLg~~~~~l~~~~~~~~~~~~~rE~~~L~RL~~~~~~r~~a~~~l~~~~~~~A~~~~~~L~~~~~~~--- 150 (338)
T PRK05415 74 WLIDALQQQDWLGLGAAVVGALIVLAGLGIVVREWRRLRRLRQRAHLREEAAALLQSDDVGEARAFCEKLAKQAGIP--- 150 (338)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---
T ss_conf 99999985848999999999999999999999999999999989999999999986678778999999999871898---
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999997744310256892338999----9999999999999999828712567864304
Q gi|254780551|r 87 IFMSAMSEWKKSCDKGARSPIGIQDR----IDRMMDVAIARELEEITEKLSFLGSMSSAGL 143 (230)
Q Consensus 87 i~~~~~~~~~~~~~~~~~~~~~~~e~----i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP 143 (230)
-...+...|....++ .++..+..+- +-.-+|....+++.+-.+.- +++..++|
T Consensus 151 ~~~~~~~r~~~~~~~-~~d~~ell~L~e~~vL~plD~~A~~~V~~~A~e~---a~v~AvSP 207 (338)
T PRK05415 151 QLAPALQRWQASLHE-IHNDAELLRLYEREVLPPLDAQARRLISRAAAES---ALVTAVSP 207 (338)
T ss_pred CCCHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HHHHHCCH
T ss_conf 330899999986032-2797999999998726177899999999998777---78765075
No 56
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=23.74 E-value=31 Score=14.31 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 99999999999851046
Q gi|254780551|r 213 FANEFSAILSRQTEGNI 229 (230)
Q Consensus 213 ~a~~~~~~l~r~~~~~~ 229 (230)
...+|++++.|+++|||
T Consensus 372 I~~QLLnil~RDpHGNv 388 (566)
T TIGR02477 372 IRKQLLNILDRDPHGNV 388 (566)
T ss_pred HHHHHHHHHCCCCCCCE
T ss_conf 99999875267998853
No 57
>pfam05915 DUF872 Eukaryotic protein of unknown function (DUF872). This family consists of several uncharacterized eukaryotic proteins. The function of this family is unknown.
Probab=23.26 E-value=47 Score=13.19 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 64304999999999999999964113
Q gi|254780551|r 139 SSAGLLVGILGAVLGMMGFFQSIAGY 164 (230)
Q Consensus 139 ~s~AP~lGLlGTV~Gmi~aF~~ia~~ 164 (230)
+..|-+|.++|||...+.+|..-+..
T Consensus 41 I~lA~~Lli~G~~Ll~~g~~~~~~~~ 66 (112)
T pfam05915 41 IAAALILLLLGAVLLVIGLFIFANPM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999961566
No 58
>pfam02960 K1 K1 glycoprotein.
Probab=23.23 E-value=48 Score=13.19 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 12567864304999999999
Q gi|254780551|r 133 SFLGSMSSAGLLVGILGAVL 152 (230)
Q Consensus 133 ~~L~ti~s~AP~lGLlGTV~ 152 (230)
.+.-.++-+..|.|.|||++
T Consensus 72 vfMTlVALIGTMCGILGTiI 91 (130)
T pfam02960 72 VFMTLVALIGTMCGILGTII 91 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998988889999
No 59
>KOG2290 consensus
Probab=23.16 E-value=48 Score=13.18 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999964113--53016777779999999-99999999999999999
Q gi|254780551|r 144 LVGILGAVLGMMGFFQSIAGY--YSNNVVSIPGIIESLIS-ILLGLCVSIPSSIAYNK 198 (230)
Q Consensus 144 ~lGLlGTV~Gmi~aF~~ia~~--g~~~~~~a~GIseALit-Ta~GL~VAIPa~~~yn~ 198 (230)
.--||||+.|.+.+|.-+--- |.-+. ..-=.--+|. -++--..||-.+++|||
T Consensus 567 ~aHlfG~i~GLl~s~~~~PYi~Fg~~d~--yrKr~~ilIs~ivf~~Lla~Lvv~fy~~ 622 (652)
T KOG2290 567 WAHLFGTIFGLLTSIIFLPYIDFGDFDL--YRKRFYILISQIVFSGLLAILVVVFYNY 622 (652)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 8888889999998888623301463154--5557899999999999999987740433
No 60
>pfam11166 DUF2951 Protein of unknown function (DUF2951). This family of proteins has no known function. It has a highly conserved sequence.
Probab=22.47 E-value=42 Score=13.53 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHH--HHHHHHHHHH
Q ss_conf 712567864304--9999999999
Q gi|254780551|r 132 LSFLGSMSSAGL--LVGILGAVLG 153 (230)
Q Consensus 132 l~~L~ti~s~AP--~lGLlGTV~G 153 (230)
+++|+.||++.- .+-+|-||.|
T Consensus 73 mwiLGlvgTI~~sliiA~LRtifG 96 (97)
T pfam11166 73 MWILGLVGTILSSLIIALLRTIFG 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999807
No 61
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=22.40 E-value=21 Score=15.30 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.7
Q ss_pred HCCCHHHHHHHHHHHHHH
Q ss_conf 287125678643049999
Q gi|254780551|r 130 EKLSFLGSMSSAGLLVGI 147 (230)
Q Consensus 130 ~~l~~L~ti~s~AP~lGL 147 (230)
-||+++..|||.=|||||
T Consensus 415 FGLTLmEAvGSGLgmIGF 432 (511)
T TIGR02918 415 FGLTLMEAVGSGLGMIGF 432 (511)
T ss_pred CHHHHHHHHHCCCCCCCC
T ss_conf 115799997504332366
No 62
>TIGR00796 livcs branched-chain amino acid transport system II carrier protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane.
Probab=22.19 E-value=50 Score=13.07 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7779999999999999999999999999999999
Q gi|254780551|r 172 IPGIIESLISILLGLCVSIPSSIAYNKFIEDSKK 205 (230)
Q Consensus 172 a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~ 205 (230)
+.=|--|=+||+.||.+|-=- ||.+++-+
T Consensus 297 g~~i~lACLTTavGL~~acse-----yF~~~~P~ 325 (435)
T TIGR00796 297 GLIITLACLTTAVGLITACSE-----YFAKLVPK 325 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHCCC
T ss_conf 999999999998999999899-----99864156
No 63
>PRK01770 sec-independent translocase; Provisional
Probab=20.83 E-value=53 Score=12.90 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 999997546999998622899789999820
Q gi|254780551|r 48 NFITLRRQFREFEQLFWSGQSLETVCKSLK 77 (230)
Q Consensus 48 ~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~ 77 (230)
++++.|+...+|...+...-+++++.+.++
T Consensus 35 ~v~~~R~~a~~~q~el~~el~~~El~e~~k 64 (171)
T PRK01770 35 WIRALRSLATTVQNELTQELKLQELQDSLK 64 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999997999999999
No 64
>TIGR00834 ae anion exchange protein; InterPro: IPR003020 Bicarbonate (HCO_3^-) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO_3^- transport modes. Anion exchanger proteins exchange HCO_3^- for Cl^- in a reversible, electroneutral manner . Na^+/HCO_3^- co-transport proteins mediate the coupled movement of Na^+ and HCO_3^- across plasma membranes, often in an electrogenic manner . Na^- driven Cl^-/HCO_3^- exchange and K^+/HCO_3^- exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO_3^- transporters that have been cloned to date (the anion exchangers and Na^+/HCO_3^- co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO_3^- and are inhibited by a class of pharmacological agents called disulphonic stilbenes . They share around ~25-30equence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. ; GO: 0005452 inorganic anion exchanger activity, 0006820 anion transport, 0016020 membrane.
Probab=20.82 E-value=53 Score=12.90 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999982871256786430499999999999999996411353016777779999999999
Q gi|254780551|r 113 IDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILL 184 (230)
Q Consensus 113 i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~ 184 (230)
+.+|++-+....+-=+ |+| ++||-| ||+++=+..+.+ +. |++|-|+.||.
T Consensus 391 f~DAL~~Q~LAAviFI-----YFA---aLsPAi-----------TFGGLLgekT~~--~m-GVsEll~sTAv 440 (987)
T TIGR00834 391 FTDALNPQCLAAVIFI-----YFA---ALSPAI-----------TFGGLLGEKTEN--MM-GVSELLLSTAV 440 (987)
T ss_pred HHHHHHHHHHHHHHHH-----HHH---HHHHHH-----------HCCCCHHHHHHH--HH-HHHHHHHHHHH
T ss_conf 8654218899999999-----998---750455-----------215536888768--99-99999999999
No 65
>pfam06813 Nodulin-like Nodulin-like. This family represents a conserved region within plant nodulin-like proteins.
Probab=20.31 E-value=39 Score=13.71 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999999999
Q gi|254780551|r 174 GIIESLISILLGLCVSIPSSIAYNKFIE 201 (230)
Q Consensus 174 GIseALitTa~GL~VAIPa~~~yn~l~~ 201 (230)
|...++..+-.||--||-..+...+|.+
T Consensus 130 G~vvgilK~f~GLs~AI~t~iy~a~~~~ 157 (248)
T pfam06813 130 GVVLGILKGYAGLSAAIYTQLYTAIFGN 157 (248)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 5267888776011299999999998089
Done!