Query gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 230
No_of_seqs 119 out of 2288
Neff 6.9
Searched_HMMs 23785
Date Tue May 31 20:21:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780551.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 69.0 4.7 0.0002 17.9 5.9 46 110-155 281-326 (363)
2 3b81_A Transcriptional regulat 20.0 30 0.0013 13.0 1.2 13 212-224 179-191 (203)
3 3f1b_A TETR-like transcription 17.5 38 0.0016 12.4 2.4 14 210-223 179-192 (203)
4 3on4_A Transcriptional regulat 16.1 42 0.0017 12.2 2.5 12 174-185 154-165 (191)
5 2gfn_A HTH-type transcriptiona 14.8 45 0.0019 12.0 2.7 13 175-187 158-170 (209)
6 2eh3_A Transcriptional regulat 12.9 51 0.0021 11.7 3.2 73 148-229 1-73 (179)
7 2qtq_A Transcriptional regulat 12.3 53 0.0022 11.6 2.6 51 174-228 36-86 (213)
8 3eup_A Transcriptional regulat 11.9 55 0.0023 11.5 1.1 51 173-227 30-80 (204)
9 3hrn_A Transient receptor pote 11.9 55 0.0023 11.5 4.8 28 196-223 8-35 (64)
10 2dg8_A Putative TETR-family tr 11.5 56 0.0024 11.5 3.4 36 195-230 46-81 (193)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=69.01 E-value=4.7 Score=17.86 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999828712567864304999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMM 155 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi 155 (230)
.|.+...++........++++-+..|..++++-=-+-++..++||=
T Consensus 281 ~e~l~~l~d~~~s~~s~~~N~~mk~LTiis~IFlPlTfIaGiyGMN 326 (363)
T 2iub_A 281 RDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMN 326 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999999999999999999999998165564
No 2
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=20.04 E-value=30 Score=13.04 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780551|r 212 GFANEFSAILSRQ 224 (230)
Q Consensus 212 ~~a~~~~~~l~r~ 224 (230)
.....+.+.+.+-
T Consensus 179 ~~~~~~~~~l~~~ 191 (203)
T 3b81_A 179 LKLTAFKETLIKI 191 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 3
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=17.48 E-value=38 Score=12.45 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780551|r 210 MEGFANEFSAILSR 223 (230)
Q Consensus 210 le~~a~~~~~~l~r 223 (230)
.|.....+.+++-+
T Consensus 179 ~~~~~~~~~~l~~~ 192 (203)
T 3f1b_A 179 VDAAADLLESLAWR 192 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999997
No 4
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=16.14 E-value=42 Score=12.25 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799999999999
Q gi|254780551|r 174 GIIESLISILLG 185 (230)
Q Consensus 174 GIseALitTa~G 185 (230)
-++..++++.-|
T Consensus 154 ~~a~~~~~~~~G 165 (191)
T 3on4_A 154 SLAKQIISLVEG 165 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 5
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=14.79 E-value=45 Score=12.04 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780551|r 175 IIESLISILLGLC 187 (230)
Q Consensus 175 IseALitTa~GL~ 187 (230)
++..+++..-|+.
T Consensus 158 ~a~~l~~~~~G~~ 170 (209)
T 2gfn_A 158 VTVALVALTDGLA 170 (209)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 6
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=12.88 E-value=51 Score=11.71 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999964113530167777799999999999999999999999999999999999999999999999998510
Q gi|254780551|r 148 LGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230)
Q Consensus 148 lGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230)
++|=--++++...+-....-......-|+++ ..++--.+|+||.+|-+-+..-++....++...+....++
T Consensus 1 m~TRe~Il~aa~~l~~~~G~~~~t~~~Ia~~---------agvs~~tiY~~F~~K~~L~~a~~~~~~~~~~~~~~~~~~~ 71 (179)
T 2eh3_A 1 MGTKERILEVSKELFFEKGYQGTSVEEIVKR---------ANLSKGAFYFHFKSKEELITEIIERTHKKIISLFEENKEK 71 (179)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHH---------HTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH---------HCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9699999999999999739250769999998---------7849652144289999999999999999999999862138
Q ss_pred CC
Q ss_conf 46
Q gi|254780551|r 228 NI 229 (230)
Q Consensus 228 ~~ 229 (230)
+.
T Consensus 72 ~~ 73 (179)
T 2eh3_A 72 TP 73 (179)
T ss_dssp CH
T ss_pred CH
T ss_conf 99
No 7
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=12.25 E-value=53 Score=11.59 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7999999999999999999999999999999999999999999999999985104
Q gi|254780551|r 174 GIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEGN 228 (230)
Q Consensus 174 GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~~ 228 (230)
+.+-.-|+..+|...+ ..|+||.+|-+-+..-++....++...+....+.+
T Consensus 36 ~~si~~Ia~~agvs~~----tiy~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~ 86 (213)
T 2qtq_A 36 DISLSELSLRSGLNSA----LVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKD 86 (213)
T ss_dssp CCCHHHHHHHHCCCHH----HHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHCCCHH----HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1789999999794999----99998798999999899999999999999876303
No 8
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=11.88 E-value=55 Score=11.52 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7799999999999999999999999999999999999999999999999998510
Q gi|254780551|r 173 PGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230)
Q Consensus 173 ~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230)
.|++-+-|+..+|...+ .+|+||.+|-+-+..-++....++.+.+....+.
T Consensus 30 ~~~t~~~Ia~~agvs~~----~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
T 3eup_A 30 AGTSLTDLTEATNLTKG----SIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQA 80 (204)
T ss_dssp HHCCHHHHHHHHTCCHH----HHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHH----HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 62889999999790999----9977645647999999999999999999998743
No 9
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=11.86 E-value=55 Score=11.52 Aligned_cols=28 Identities=4% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254780551|r 196 YNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 196 yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
|+.|.+|++++.|.+.+..+.+=+.+.+
T Consensus 8 f~vL~rRVdr~EhSIgSIvSKIDav~~K 35 (64)
T 3hrn_A 8 FQVLVRRVDRMEHSIGSIVSKIDAVIVK 35 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998782899999999999
No 10
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=11.55 E-value=56 Score=11.46 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999999999998510469
Q gi|254780551|r 195 AYNKFIEDSKKFAMQMEGFANEFSAILSRQTEGNIS 230 (230)
Q Consensus 195 ~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~~~~ 230 (230)
+|+||.+|-+-+..-++....++.+.+.+..+...+
T Consensus 46 ~Y~~F~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T 2dg8_A 46 MTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGAAAD 81 (193)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 987808999999999999999999999988615999
Done!