Query gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 230 No_of_seqs 119 out of 2288 Neff 6.9 Searched_HMMs 13730 Date Wed Jun 1 09:25:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780551.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1rkta1 a.4.1.9 (A:2-82) Hypot 29.0 13 0.00095 13.8 1.9 36 191-226 44-79 (81) 2 d2fbqa1 a.4.1.9 (A:2-80) Trans 28.4 13 0.00097 13.8 3.0 33 194-226 40-72 (79) 3 d2o7ta1 a.4.1.9 (A:1-78) Trans 23.4 17 0.0012 13.2 3.2 34 194-227 43-76 (78) 4 d2fd5a1 a.4.1.9 (A:1-76) Proba 22.8 8.7 0.00064 14.9 0.1 27 195-221 44-70 (76) 5 d1dlca3 f.1.3.1 (A:61-289) del 17.8 22 0.0016 12.5 1.4 62 85-152 80-141 (229) 6 d2g7sa1 a.4.1.9 (A:3-76) Putat 17.8 22 0.0016 12.5 2.8 28 194-221 40-67 (74) 7 d2gfna1 a.4.1.9 (A:4-80) Proba 16.2 24 0.0017 12.3 3.4 35 192-226 40-74 (77) 8 d1zk8a1 a.4.1.9 (A:6-77) Trans 14.4 27 0.0019 12.0 1.6 29 194-222 39-67 (72) 9 d1vi0a1 a.4.1.9 (A:6-77) Hypot 14.2 27 0.002 11.9 4.2 36 191-226 34-69 (72) 10 d1jt6a1 a.4.1.9 (A:2-72) Multi 13.3 29 0.0021 11.8 3.8 35 190-224 33-67 (71) No 1 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=28.97 E-value=13 Score=13.83 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999851 Q gi|254780551|r 191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230) Q Consensus 191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230) +--.+|+||.+|-+-+..-++....++...+....+ T Consensus 44 s~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~~e 79 (81) T d1rkta1 44 SRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAE 79 (81) T ss_dssp CHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 988998888499999999999999999999999875 No 2 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=28.38 E-value=13 Score=13.77 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999851 Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230) Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230) .+|+||.+|-+-+..-++....++...+.+..+ T Consensus 40 s~y~~F~~K~~l~~~~~~~~~~~~~~~~~~~~~ 72 (79) T d2fbqa1 40 AVNYHFGSKKALIQAVFSRFLGPFCASLEKELD 72 (79) T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 787877699999997799999999999999975 No 3 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=23.39 E-value=17 Score=13.21 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999998510 Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230) Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230) .+|+||.+|-+-+..-++....++.+......++ T Consensus 43 t~y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~ 76 (78) T d2o7ta1 43 TLYRNFPDRFTLDMACAQYLFNVVISLQLQAIST 76 (78) T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999886999999999999999999999998738 No 4 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=22.77 E-value=8.7 Score=14.86 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254780551|r 195 AYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230) Q Consensus 195 ~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230) +|+||.+|-+-+..-++....++.+.+ T Consensus 44 ~Y~~F~~Ke~L~~~~~~~~~~~~~~~l 70 (76) T d2fd5a1 44 FYAHFQSKDALMLEAFEQLLGKRRELL 70 (76) T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 042089999999999999999999998 No 5 >d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]} Probab=17.80 E-value=22 Score=12.49 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999977443102568923389999999999999999999828712567864304999999999 Q gi|254780551|r 85 AAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVL 152 (230) Q Consensus 85 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~ 152 (230) ...+..+++.|.+.... ...+ ...+.+.+.. ......+.+.++.+..-+.--|++.++-..- T Consensus 80 l~~Y~~al~~w~~np~~-~~~~-~~~~~v~~~f----~~~~~~f~~~l~~F~~~~ye~~lLp~YaqaA 141 (229) T d1dlca3 80 VEDYVSALSSWQKNPVS-SRNP-HSQGRIRELF----SQAESHFRNSMPSFAISGYEVLFLTTYAQAA 141 (229) T ss_dssp HHHHHHHHHHHHHSCTT-SCCH-HHHHHHHHHH----HHHHHHHHHHGGGGSCTTCTTTTHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCC-CCCH-HHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999999999858887-7881-4799999999----9999999987899746883455699999999 No 6 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=17.76 E-value=22 Score=12.49 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999 Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230) Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230) .+|+||.+|-+-+..-++....++...+ T Consensus 40 ~iY~~F~sK~~L~~~~~~~~~~~~~~~~ 67 (74) T d2g7sa1 40 SIHHHFPSKSDLVCKLVSQYRQEAEAGI 67 (74) T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 6988883999999999999999999999 No 7 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=16.23 E-value=24 Score=12.26 Aligned_cols=35 Identities=3% Similarity=-0.028 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999851 Q gi|254780551|r 192 SSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230) Q Consensus 192 a~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230) --.+|+||.+|-+-+..-++....++.+.+..-.+ T Consensus 40 ~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 74 (77) T d2gfna1 40 TGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILD 74 (77) T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 77998888399999999999999999999999983 No 8 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=14.39 E-value=27 Score=11.97 Aligned_cols=29 Identities=10% Similarity=-0.191 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILS 222 (230) Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~ 222 (230) .+|+||.+|-+-+..-++....++.+.+. T Consensus 39 slY~yF~~k~~L~~~~~~~~~~~~~~~l~ 67 (72) T d1zk8a1 39 SLYNHVKGLQDVRKNLGIYGIKKLHNRLE 67 (72) T ss_dssp HHTTTCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99898839999999999999999999999 No 9 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=14.22 E-value=27 Score=11.94 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999851 Q gi|254780551|r 191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230) Q Consensus 191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230) +--.+|+||.+|-+-+..-++....++.+.+....+ T Consensus 34 s~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 69 (72) T d1vi0a1 34 ADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIK 69 (72) T ss_dssp CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 987998888399999999999999999999999988 No 10 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=13.29 E-value=29 Score=11.78 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999998 Q gi|254780551|r 190 IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ 224 (230) Q Consensus 190 IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~ 224 (230) |+--.+|+||.+|-+-+..-++....++.+.+..+ T Consensus 33 vs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 67 (71) T d1jt6a1 33 SSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKE 67 (71) T ss_dssp CCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 58759988884999999999999999999999996 Done!