Query         gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 230
No_of_seqs    119 out of 2288
Neff          6.9 
Searched_HMMs 13730
Date          Wed Jun  1 09:25:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780551.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rkta1 a.4.1.9 (A:2-82) Hypot  29.0      13 0.00095   13.8   1.9   36  191-226    44-79  (81)
  2 d2fbqa1 a.4.1.9 (A:2-80) Trans  28.4      13 0.00097   13.8   3.0   33  194-226    40-72  (79)
  3 d2o7ta1 a.4.1.9 (A:1-78) Trans  23.4      17  0.0012   13.2   3.2   34  194-227    43-76  (78)
  4 d2fd5a1 a.4.1.9 (A:1-76) Proba  22.8     8.7 0.00064   14.9   0.1   27  195-221    44-70  (76)
  5 d1dlca3 f.1.3.1 (A:61-289) del  17.8      22  0.0016   12.5   1.4   62   85-152    80-141 (229)
  6 d2g7sa1 a.4.1.9 (A:3-76) Putat  17.8      22  0.0016   12.5   2.8   28  194-221    40-67  (74)
  7 d2gfna1 a.4.1.9 (A:4-80) Proba  16.2      24  0.0017   12.3   3.4   35  192-226    40-74  (77)
  8 d1zk8a1 a.4.1.9 (A:6-77) Trans  14.4      27  0.0019   12.0   1.6   29  194-222    39-67  (72)
  9 d1vi0a1 a.4.1.9 (A:6-77) Hypot  14.2      27   0.002   11.9   4.2   36  191-226    34-69  (72)
 10 d1jt6a1 a.4.1.9 (A:2-72) Multi  13.3      29  0.0021   11.8   3.8   35  190-224    33-67  (71)

No 1  
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=28.97  E-value=13  Score=13.83  Aligned_cols=36  Identities=19%  Similarity=0.123  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999851
Q gi|254780551|r  191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE  226 (230)
Q Consensus       191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~  226 (230)
                      +--.+|+||.+|-+-+..-++....++...+....+
T Consensus        44 s~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~~e   79 (81)
T d1rkta1          44 SRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAE   79 (81)
T ss_dssp             CHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             988998888499999999999999999999999875


No 2  
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.38  E-value=13  Score=13.77  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999851
Q gi|254780551|r  194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE  226 (230)
Q Consensus       194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~  226 (230)
                      .+|+||.+|-+-+..-++....++...+.+..+
T Consensus        40 s~y~~F~~K~~l~~~~~~~~~~~~~~~~~~~~~   72 (79)
T d2fbqa1          40 AVNYHFGSKKALIQAVFSRFLGPFCASLEKELD   72 (79)
T ss_dssp             HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             787877699999997799999999999999975


No 3  
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.39  E-value=17  Score=13.21  Aligned_cols=34  Identities=9%  Similarity=-0.020  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999998510
Q gi|254780551|r  194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG  227 (230)
Q Consensus       194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~  227 (230)
                      .+|+||.+|-+-+..-++....++.+......++
T Consensus        43 t~y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~   76 (78)
T d2o7ta1          43 TLYRNFPDRFTLDMACAQYLFNVVISLQLQAIST   76 (78)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999886999999999999999999999998738


No 4  
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.77  E-value=8.7  Score=14.86  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999
Q gi|254780551|r  195 AYNKFIEDSKKFAMQMEGFANEFSAIL  221 (230)
Q Consensus       195 ~yn~l~~rv~~~~~~le~~a~~~~~~l  221 (230)
                      +|+||.+|-+-+..-++....++.+.+
T Consensus        44 ~Y~~F~~Ke~L~~~~~~~~~~~~~~~l   70 (76)
T d2fd5a1          44 FYAHFQSKDALMLEAFEQLLGKRRELL   70 (76)
T ss_dssp             GGGTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             042089999999999999999999998


No 5  
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=17.80  E-value=22  Score=12.49  Aligned_cols=62  Identities=18%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999977443102568923389999999999999999999828712567864304999999999
Q gi|254780551|r   85 AAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVL  152 (230)
Q Consensus        85 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~  152 (230)
                      ...+..+++.|.+.... ...+ ...+.+.+..    ......+.+.++.+..-+.--|++.++-..-
T Consensus        80 l~~Y~~al~~w~~np~~-~~~~-~~~~~v~~~f----~~~~~~f~~~l~~F~~~~ye~~lLp~YaqaA  141 (229)
T d1dlca3          80 VEDYVSALSSWQKNPVS-SRNP-HSQGRIRELF----SQAESHFRNSMPSFAISGYEVLFLTTYAQAA  141 (229)
T ss_dssp             HHHHHHHHHHHHHSCTT-SCCH-HHHHHHHHHH----HHHHHHHHHHGGGGSCTTCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCC-CCCH-HHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999999999858887-7881-4799999999----9999999987899746883455699999999


No 6  
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=17.76  E-value=22  Score=12.49  Aligned_cols=28  Identities=14%  Similarity=0.103  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999
Q gi|254780551|r  194 IAYNKFIEDSKKFAMQMEGFANEFSAIL  221 (230)
Q Consensus       194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l  221 (230)
                      .+|+||.+|-+-+..-++....++...+
T Consensus        40 ~iY~~F~sK~~L~~~~~~~~~~~~~~~~   67 (74)
T d2g7sa1          40 SIHHHFPSKSDLVCKLVSQYRQEAEAGI   67 (74)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             6988883999999999999999999999


No 7  
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=16.23  E-value=24  Score=12.26  Aligned_cols=35  Identities=3%  Similarity=-0.028  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999851
Q gi|254780551|r  192 SSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE  226 (230)
Q Consensus       192 a~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~  226 (230)
                      --.+|+||.+|-+-+..-++....++.+.+..-.+
T Consensus        40 ~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~   74 (77)
T d2gfna1          40 TGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILD   74 (77)
T ss_dssp             HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             77998888399999999999999999999999983


No 8  
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=14.39  E-value=27  Score=11.97  Aligned_cols=29  Identities=10%  Similarity=-0.191  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999
Q gi|254780551|r  194 IAYNKFIEDSKKFAMQMEGFANEFSAILS  222 (230)
Q Consensus       194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~  222 (230)
                      .+|+||.+|-+-+..-++....++.+.+.
T Consensus        39 slY~yF~~k~~L~~~~~~~~~~~~~~~l~   67 (72)
T d1zk8a1          39 SLYNHVKGLQDVRKNLGIYGIKKLHNRLE   67 (72)
T ss_dssp             HHTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99898839999999999999999999999


No 9  
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=14.22  E-value=27  Score=11.94  Aligned_cols=36  Identities=8%  Similarity=0.126  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999851
Q gi|254780551|r  191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE  226 (230)
Q Consensus       191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~  226 (230)
                      +--.+|+||.+|-+-+..-++....++.+.+....+
T Consensus        34 s~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~   69 (72)
T d1vi0a1          34 ADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIK   69 (72)
T ss_dssp             CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987998888399999999999999999999999988


No 10 
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=13.29  E-value=29  Score=11.78  Aligned_cols=35  Identities=9%  Similarity=0.110  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999998
Q gi|254780551|r  190 IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ  224 (230)
Q Consensus       190 IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~  224 (230)
                      |+--.+|+||.+|-+-+..-++....++.+.+..+
T Consensus        33 vs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~   67 (71)
T d1jt6a1          33 SSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKE   67 (71)
T ss_dssp             CCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58759988884999999999999999999999996


Done!