RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62] (230 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.8 bits (77), Expect = 0.038 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 83/192 (43%) Query: 27 IITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIGLAA 86 ++T + I SW IT+ LF+ G + + + Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITV---------LFFIG------VRC---YEAYPNTS 318 Query: 87 IFMSAMSEWKKSCDKGARSPIGIQDRIDR-------MMDVA-IARE-LEEITEKL-SFLG 136 + P ++D ++ M+ ++ + +E +++ K S L Sbjct: 319 L-----------------PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361 Query: 137 SMSSAGL-LVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS------ 189 + + LV GA N VVS G +S L GL ++ Sbjct: 362 AGKQVEISLVN--GA---------------KNLVVS--GPPQS----LYGLNLTLRKAKA 398 Query: 190 --------IPSS 193 IP S Sbjct: 399 PSGLDQSRIPFS 410 >3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} Length = 807 Score = 27.6 bits (61), Expect = 2.6 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 6/82 (7%) Query: 119 VAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSI-PGIIE 177 V+ A + + + G L I +L +G G +S SI G Sbjct: 588 VSNAHITGAAEKVAAIFAQRTLEGNLAEIGDYILNRVGACGLAWGAFSQKASSIGTGCNI 647 Query: 178 SLISILLGLCVSIPSSIAYNKF 199 I +LG P S Y + Sbjct: 648 FGIPAVLG-----PHSSKYRRA 664 >1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermidine, transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A* Length = 369 Score = 26.4 bits (58), Expect = 6.5 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 81 NIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSS 140 N G A ++AM E K D R L T L + ++ S Sbjct: 58 NFGRAVQQVNAMIEKKLEPLSQ--------DEDQHADLTQSRRPLTSCTIFLGYTSNLIS 109 Query: 141 AGL 143 +G+ Sbjct: 110 SGI 112 >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 Score = 26.1 bits (57), Expect = 7.9 Identities = 4/26 (15%), Positives = 9/26 (34%) Query: 64 WSGQSLETVCKSLKNHHNIGLAAIFM 89 W+ + +E + L +F Sbjct: 526 WNMEEIEKTLRDLSEKGLASKKVVFQ 551 >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 Score = 25.9 bits (56), Expect = 8.1 Identities = 4/26 (15%), Positives = 10/26 (38%) Query: 64 WSGQSLETVCKSLKNHHNIGLAAIFM 89 W+ +LE + + + L + Sbjct: 407 WTEAALEALLRGFAAEKGVKLGQVAQ 432 >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} Length = 488 Score = 25.7 bits (56), Expect = 9.7 Identities = 4/26 (15%), Positives = 9/26 (34%) Query: 64 WSGQSLETVCKSLKNHHNIGLAAIFM 89 W+ + +E + L +F Sbjct: 422 WNMEEIEKTLRDLSEKGLASKKVVFQ 447 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.138 0.394 Gapped Lambda K H 0.267 0.0406 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,872,413 Number of extensions: 83861 Number of successful extensions: 310 Number of sequences better than 10.0: 1 Number of HSP's gapped: 309 Number of HSP's successfully gapped: 7 Length of query: 230 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 141 Effective length of database: 3,535,514 Effective search space: 498507474 Effective search space used: 498507474 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.8 bits)