RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus
Liberibacter asiaticus str. psy62]
         (230 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.8 bits (77), Expect = 0.038
 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 83/192 (43%)

Query: 27  IITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNHHNIGLAA 86
           ++T + I    SW          IT+         LF+ G       +    +      +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITV---------LFFIG------VRC---YEAYPNTS 318

Query: 87  IFMSAMSEWKKSCDKGARSPIGIQDRIDR-------MMDVA-IARE-LEEITEKL-SFLG 136
           +                  P  ++D ++        M+ ++ + +E +++   K  S L 
Sbjct: 319 L-----------------PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361

Query: 137 SMSSAGL-LVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS------ 189
           +     + LV   GA                N VVS  G  +S    L GL ++      
Sbjct: 362 AGKQVEISLVN--GA---------------KNLVVS--GPPQS----LYGLNLTLRKAKA 398

Query: 190 --------IPSS 193
                   IP S
Sbjct: 399 PSGLDQSRIPFS 410


>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia,
           iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A
           {Methanosarcina barkeri}
          Length = 807

 Score = 27.6 bits (61), Expect = 2.6
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 119 VAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSI-PGIIE 177
           V+ A       +  +     +  G L  I   +L  +G      G +S    SI  G   
Sbjct: 588 VSNAHITGAAEKVAAIFAQRTLEGNLAEIGDYILNRVGACGLAWGAFSQKASSIGTGCNI 647

Query: 178 SLISILLGLCVSIPSSIAYNKF 199
             I  +LG     P S  Y + 
Sbjct: 648 FGIPAVLG-----PHSSKYRRA 664


>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor,
           spermidine, transferase; HET: NAD; 2.15A {Homo sapiens}
           SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
          Length = 369

 Score = 26.4 bits (58), Expect = 6.5
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 81  NIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSS 140
           N G A   ++AM E K              D           R L   T  L +  ++ S
Sbjct: 58  NFGRAVQQVNAMIEKKLEPLSQ--------DEDQHADLTQSRRPLTSCTIFLGYTSNLIS 109

Query: 141 AGL 143
           +G+
Sbjct: 110 SGI 112


>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
           2; protein-RNA complex, ligase-RNA complex; HET: GSU;
           3.37A {Thermotoga maritima}
          Length = 592

 Score = 26.1 bits (57), Expect = 7.9
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 64  WSGQSLETVCKSLKNHHNIGLAAIFM 89
           W+ + +E   + L          +F 
Sbjct: 526 WNMEEIEKTLRDLSEKGLASKKVVFQ 551


>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, ligase; HET: GLU ATP; 1.80A {Thermus
           thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
           1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
           1g59_A 1gln_A
          Length = 468

 Score = 25.9 bits (56), Expect = 8.1
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 64  WSGQSLETVCKSLKNHHNIGLAAIFM 89
           W+  +LE + +       + L  +  
Sbjct: 407 WTEAALEALLRGFAAEKGVKLGQVAQ 432


>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
           aminoacyl-tRNA synthetase, ATP-binding, ligase,
           nucleotide-binding; HET: GSU; 2.00A {Thermotoga
           maritima}
          Length = 488

 Score = 25.7 bits (56), Expect = 9.7
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 64  WSGQSLETVCKSLKNHHNIGLAAIFM 89
           W+ + +E   + L          +F 
Sbjct: 422 WNMEEIEKTLRDLSEKGLASKKVVFQ 447


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,872,413
Number of extensions: 83861
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 7
Length of query: 230
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 141
Effective length of database: 3,535,514
Effective search space: 498507474
Effective search space used: 498507474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)