HHsearch alignment for GI: 254780552 and conserved domain: CHL00026

>CHL00026 ycf2 Ycf2.
Probab=96.75  E-value=0.012  Score=35.72  Aligned_cols=179  Identities=17%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-C-CCH----------------------------------------
Q ss_conf             0799737885577899999986189853125764-4-334----------------------------------------
Q gi|254780552|r   56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-I-AKA----------------------------------------   93 (334)
Q Consensus        56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~-~-~~~----------------------------------------   93 (334)
T Consensus      1632 GILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL~nkp~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~t~~~~~~ 1711 (2286)
T CHL00026       1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELELLTMMNALT 1711 (2286)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHH
T ss_conf             52797887666689999877426374089638998413864345554333223332221001000000112000000344


Q ss_pred             HH----HH--HH-----HHHHHCCCHHHHHHHHHCCHHHH-----HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf             67----66--66-----66410163788875761698999-----99999863475100256787652000466740055
Q gi|254780552|r   94 GD----LA--AL-----LTNLEDRDVLFIDEIHRLSIIVE-----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI  157 (334)
Q Consensus        94 ~d----l~--~~-----~~~~~~~~vlfiDEihrl~~~~q-----~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI  157 (334)
T Consensus      1712 ~~~~~~i~~~~i~LqFELAk~MSPCIIWIpnIHeLnvnd~~~l~LglL~n~ls~d~------e~~--st-----rNilVI 1778 (2286)
T CHL00026       1712 MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDC------ERC--ST-----RNILVI 1778 (2286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHCCCC------CCC--CC-----CCEEEE
T ss_conf             43233334444578899987549807961767660567762146999999842564------334--52-----451899


Q ss_pred             ECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHH---HHHHHHHHHCCCHHHHHH--HHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf             204554335545442--01206732645479999---987776541210111111--1233202210-156788777543
Q gi|254780552|r  158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK---TIVQRGAKLTGLAVTDEA--ACEIAMRSRG-TPRIAGRLLRRV  229 (334)
Q Consensus       158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~---~il~~~~~~~~i~~~~~a--l~~ia~~s~G-d~R~AlnlLe~v  229 (334)
T Consensus      1779 ASTHiPqKVDPALIaPNRLdt~IniR~l~ipQr~K~F~iLl~---tkGF~lek~~f~~n~FGS~T~GynaRDL~aL~NEa 1855 (2286)
T CHL00026       1779 ASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY---TRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1855 (2286)
T ss_pred             ECCCCCCCCCHHHCCCCCHHHHEEEHCCCCHHHHHHHHHEEE---CCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf             706787766811058530203112000466665414443000---35511125555546656400588778899986546


Q ss_pred             HHHHHHHCCCCCCHHHHHHHH
Q ss_conf             334554158864277878765
Q gi|254780552|r  230 RDFAEVAHAKTITREIADAAL  250 (334)
Q Consensus       230 ~d~a~~~~~~~i~~~~~~~~l  250 (334)
T Consensus      1856 L~ISItq~KSiIdtnTIr~Al 1876 (2286)
T CHL00026       1856 LSISITQKKSIIDTNTIRSAL 1876 (2286)
T ss_pred             HEEEEECCCCEEECCHHHHHH
T ss_conf             313330476354021288999