HHsearch alignment for GI: 254780552 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=99.84 E-value=3.6e-20 Score=142.87 Aligned_cols=210 Identities=30% Similarity=0.362 Sum_probs=141.9
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHH-------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------
Q ss_conf 9877823979999999999998661-------467767079973788557789999998618985312576443------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------ 91 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~-------~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------ 91 (334)
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHCCC
T ss_conf 67566418679999999999986385566752353456526855999872789999845468983530344464431478
Q ss_pred CHHHHHHHHHHHHC--CCHHHHHHHHHCCHHH--------------HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 34676666664101--6378887576169899--------------9999998634751002567876520004667400
Q gi|254780552|r 92 KAGDLAALLTNLED--RDVLFIDEIHRLSIIV--------------EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 92 ~~~dl~~~~~~~~~--~~vlfiDEihrl~~~~--------------q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
T Consensus 227 GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--------~--------~gvi 290 (596)
T COG0465 227 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--------N--------EGVI 290 (596)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------C--------CCEE
T ss_conf 83888999998551599669876343314545778899806999999888852015788--------8--------7548
Q ss_pred EEECCCCCCCCCHHHH--HCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 5520455433554544--201206732645479999987776541210111111-1233202210-15678877754333
Q gi|254780552|r 156 LIAATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG-TPRIAGRLLRRVRD 231 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~--sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G-d~R~AlnlLe~v~d 231 (334)
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~--~~~l~~~V~l~~iAr~tpGfsGAdL~nl~NEAal 368 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK--NKPLAEDVDLKKIARGTPGFSGADLANLLNEAAL 368 (596)
T ss_pred EECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 85267874333176528877662554478515657888788641--5777766788898643778563067655668899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 455415886427787876542
Q gi|254780552|r 232 FAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 232 ~a~~~~~~~i~~~~~~~~l~~ 252 (334)
T Consensus 369 ~aar~n~~~i~~~~i~ea~dr 389 (596)
T COG0465 369 LAARRNKKEITMRDIEEAIDR 389 (596)
T ss_pred HHHHHCCEEEECCCHHHHHHH
T ss_conf 998836846753453889999