HHsearch alignment for GI: 254780552 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=99.85 E-value=5.1e-21 Score=148.06 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=137.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-------
Q ss_conf 78239799999999999986614677670-7997378855778999999861898531257644334676666-------
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------- 99 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~------- 99 (334)
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s---LGGvrDEAEIRGHRRTY 399 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS---LGGVRDEAEIRGHRRTY 399 (782)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE---CCCCCCHHHHCCCCCCC
T ss_conf 355671168999999999998614678857999789988701189999999589779995---47654277753553123
Q ss_pred --------HHHHH----CCCHHHHHHHHHCCHHHH----HHHHHHHHCCCCCCCCCCCCCC--CEEECCCCCCEEEECCC
Q ss_conf --------66410----163788875761698999----9999986347510025678765--20004667400552045
Q gi|254780552|r 100 --------LTNLE----DRDVLFIDEIHRLSIIVE----EILYPAMEDFQLDLMVGEGPSA--RSVKINLSRFTLIAATT 161 (334)
Q Consensus 100 --------~~~~~----~~~vlfiDEihrl~~~~q----~~Ll~~mE~~~i~i~~~~~~~a--~~~~~~~~~f~lI~ATt 161 (334)
T Consensus 400 IGaMPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN-----~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQN-----NTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHC-----CCHHHCCCCCCCCHHHEEEEEECC
T ss_conf 356872899999986776874786403331677778868888862697656-----761222016766443258886037
Q ss_pred CCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q ss_conf 5433554544201206732645479999987776----------54121011111112332022--10156788777543
Q gi|254780552|r 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----------AKLTGLAVTDEAACEIAMRS--RGTPRIAGRLLRRV 229 (334)
Q Consensus 162 ~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~----------~~~~~i~~~~~al~~ia~~s--~Gd~R~AlnlLe~v 229 (334)
T Consensus 475 sl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 475 SLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred CCCCCCHHHHCCEE-EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51329867843030-56426888699999999844568999759982335565899999999876762103899999999
Q ss_pred HHHHH---H-HCCC---CCCHHHHHHHHH
Q ss_conf 33455---4-1588---642778787654
Q gi|254780552|r 230 RDFAE---V-AHAK---TITREIADAALL 251 (334)
Q Consensus 230 ~d~a~---~-~~~~---~i~~~~~~~~l~ 251 (334)
T Consensus 554 ~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 554 CRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHHHCCCCCCEEECHHHHHHHHC
T ss_conf 99999999725756624427889999739