HHsearch alignment for GI: 254780552 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.61 E-value=7.6e-15 Score=110.29 Aligned_cols=196 Identities=28% Similarity=0.415 Sum_probs=127.0
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHCC--------C-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH--
Q ss_conf 87782-397999999999999866146--------7-76707997378855778999999861898531257644334--
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKARA--------E-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-- 93 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~~--------~-~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~-- 93 (334)
T Consensus 12 eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGY 91 (444)
T COG1220 12 ELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGY 91 (444)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCC
T ss_conf 98767407177788999999989999754787762257553588888887688999999998489837887642134032
Q ss_pred ---------HHH--------------------------------------------------------------------
Q ss_conf ---------676--------------------------------------------------------------------
Q gi|254780552|r 94 ---------GDL-------------------------------------------------------------------- 96 (334)
Q Consensus 94 ---------~dl-------------------------------------------------------------------- 96 (334)
T Consensus 92 VGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~ 171 (444)
T COG1220 92 VGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDK 171 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 56458999999999999999999999999999999999999986698755466673000026799999999975887761
Q ss_pred -----------------------------HHHH-----------------------------------------HHHHCC
Q ss_conf -----------------------------6666-----------------------------------------641016
Q gi|254780552|r 97 -----------------------------AALL-----------------------------------------TNLEDR 106 (334)
Q Consensus 97 -----------------------------~~~~-----------------------------------------~~~~~~ 106 (334)
T Consensus 172 eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~ 251 (444)
T COG1220 172 EIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQN 251 (444)
T ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 79999722678753468998578999999999986468873036656999999877778876269999999999998856
Q ss_pred CHHHHHHHHHCCHH------------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC----CCCCCCCHHH
Q ss_conf 37888757616989------------9999999863475100256787652000466740055204----5543355454
Q gi|254780552|r 107 DVLFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLTNPL 170 (334)
Q Consensus 107 ~vlfiDEihrl~~~------------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT----t~~~~l~~~l 170 (334)
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~--TKyG~------VkTdHILFIasGAFh~sKPSDLiPEL 323 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVS--TKYGP------VKTDHILFIASGAFHVAKPSDLIPEL 323 (444)
T ss_pred CEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEE--CCCCC------CCCCEEEEEECCCEECCCHHHCCHHH
T ss_conf 90897346678743788998866432010210310575443--15444------01443788714820037813217666
Q ss_pred HHCCCCEEECCCCCHHHHHHHHHH--------HH---HHC--CCHHHHHHHHHHHCCC--------CCCHHHHHHHHHHH
Q ss_conf 420120673264547999998777--------65---412--1011111112332022--------10156788777543
Q gi|254780552|r 171 QDRFGIPIRLNFYEIEDLKTIVQR--------GA---KLT--GLAVTDEAACEIAMRS--------RGTPRIAGRLLRRV 229 (334)
Q Consensus 171 ~sR~~~~~~~~~~~~~el~~il~~--------~~---~~~--~i~~~~~al~~ia~~s--------~Gd~R~AlnlLe~v 229 (334)
T Consensus 324 QGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 324 QGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred CCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 27773488704489989999963760789999999973158348853799999999999855430001178899999999