HHsearch alignment for GI: 254780552 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.89 E-value=2.8e-22 Score=155.77 Aligned_cols=224 Identities=24% Similarity=0.329 Sum_probs=148.7
Q ss_pred CCCCHHHHHC----CCC-CHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 4120578750----789-87782397999999999999866146--------7767079973788557789999998618
Q gi|254780552|r 13 SQEDADISLL----RPR-TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 13 ~~~~~~~~~l----RP~-~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
T Consensus 131 ~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 131 PEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred CCCCCHHHEEEECCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 75576202001125898786533588999999999840336688899974999997127668999758899999872058
Q ss_pred CCCCCCCCCCC------CCHHHHHHHHHHHH--CCCHHHHHHHHHCC-----------HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98531257644------33467666666410--16378887576169-----------8999999998634751002567
Q gi|254780552|r 80 VNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGE 140 (334)
Q Consensus 80 ~~~~~~s~~~~------~~~~dl~~~~~~~~--~~~vlfiDEihrl~-----------~~~q~~Ll~~mE~~~i~i~~~~ 140 (334)
T Consensus 211 AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q--l-----D 283 (406)
T COG1222 211 ATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ--L-----D 283 (406)
T ss_pred CEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHH--C-----C
T ss_conf 66999421999999834116999999998741498499983112231111368888509999999999986--0-----5
Q ss_pred CCCCCEEECCCCCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC
Q ss_conf 87652000466740055204554335545442--01206732645479999987776541210111111-1233202210
Q gi|254780552|r 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG 217 (334)
Q Consensus 141 ~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G 217 (334)
T Consensus 284 GFD~~------~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~e~la~~~~g 355 (406)
T COG1222 284 GFDPR------GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDLELLARLTEG 355 (406)
T ss_pred CCCCC------CCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHCCC
T ss_conf 88978------87689985588555576650887545301168989789999999876214--67667699999875389
Q ss_pred CHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 15678-87775433345541588642778787654
Q gi|254780552|r 218 TPRIA-GRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 218 d~R~A-lnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
T Consensus 356 ~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 356 FSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 95677999999875999986047333999999999