HHsearch alignment for GI: 254780552 and conserved domain: COG1855

Probab=97.11  E-value=0.00041  Score=44.69  Aligned_cols=53  Identities=34%  Similarity=0.515  Sum_probs=39.7

Q ss_pred             HHHHHCCCC---CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             578750789---877823979999999999998661467767079973788557789999998618
Q gi|254780552|r   17 ADISLLRPR---TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG   79 (334)
Q Consensus        17 ~~~~~lRP~---~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~   79 (334)
T Consensus       233 ~EITavRPvvk~~ledY~L~dkl~eRL~---era--e-----GILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         233 WEITAVRPVVKLSLEDYGLSDKLKERLE---ERA--E-----GILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             EEEEEEEEEEEEEHHHCCCCHHHHHHHH---HHH--C-----CEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             2899971369960554287989999988---641--6-----469956999974689999999998