HHsearch alignment for GI: 254780552 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.44 E-value=1.5e-11 Score=90.09 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=132.4
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 987782397999999999999866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~---s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP---SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG 214 (464)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 5567752069999999999999847---7997899778987589999999860744589925633464898887777614
Q ss_pred --HHHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf --6666641----------0163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 97 --AALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 --~~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv-G---~~~~i~vd---vRiIaaT~~dL 287 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV-G---GNKPIKVD---VRIIAATNRDL 287 (464)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEC-C---CCCEECEE---EEEEEECCCCH
T ss_conf 56567677643457615773796587323110999999999999870706735-8---88600001---69996057789
Q ss_pred C-------CCHHHHHCCCC-EEECCCCC--HHHHH----HHHHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf 3-------55454420120-67326454--79999----98777654121---011111112332022-10156788777
Q gi|254780552|r 165 L-------LTNPLQDRFGI-PIRLNFYE--IEDLK----TIVQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLL 226 (334)
Q Consensus 165 ~-------l~~~l~sR~~~-~~~~~~~~--~~el~----~il~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlL 226 (334)
T Consensus 288 ~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~v 367 (464)
T COG2204 288 EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVV 367 (464)
T ss_pred HHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99988197378888652331104876223620079999999999999809998887999999997389981899999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q ss_conf 5433345541588642778
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREI 245 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~ 245 (334)
T Consensus 368 er~~---il~~~~~i~~~~ 383 (464)
T COG2204 368 ERAV---ILSEGPEIEVED 383 (464)
T ss_pred HHHH---HCCCCCCCCHHH
T ss_conf 9998---517865466544