HHsearch alignment for GI: 254780552 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=661.35 Aligned_cols=330 Identities=60% Similarity=1.001 Sum_probs=319.9
Q ss_pred HHCCCCCCCCCC-HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 102684444120-5787507898778239799999999999986614677670799737885577899999986189853
Q gi|254780552|r 5 EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
T Consensus 2 ~r~i~~~~~~~~~~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 2 DRIISPEKQEEEMKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 75347422540444430358654888518399999999999999844987674786479987688899999998567737
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 12576443346766666641016378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 84 ~~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
T Consensus 82 ~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 82 ITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCC
T ss_conf 63662015726599998639867767772553147428989646753105778972487553476379981375101346
Q ss_pred CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33554544201206732645479999987776541210111111123320221015678877754333455415886427
Q gi|254780552|r 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 (334)
Q Consensus 164 ~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~ 243 (334)
T Consensus 162 G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~ 241 (332)
T COG2255 162 GMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDR 241 (332)
T ss_pred CCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 64563368862860454058889999999988887387768579999998636993899999999999999816882048
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78787654210000004677688999999751866206999999828745674678999999834305871899999988
Q gi|254780552|r 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323 (334)
Q Consensus 244 ~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a 323 (334)
T Consensus 242 ~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~aT~~a 321 (332)
T COG2255 242 DIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRIATAKA 321 (332)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHH
T ss_conf 99999998729640255689999999999973799823999999965767778888748998833565188853410999
Q ss_pred HHHCCCCCCCC
Q ss_conf 86648888899
Q gi|254780552|r 324 WQHLGIDIPHR 334 (334)
Q Consensus 324 ~EdiGla~P~~ 334 (334)
T Consensus 322 y~hl~~~~~~~ 332 (332)
T COG2255 322 YEHLGLPPPEK 332 (332)
T ss_pred HHHHCCCCCCC
T ss_conf 99846688899