HHsearch alignment for GI: 254780552 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=539.28 Aligned_cols=275 Identities=29% Similarity=0.352 Sum_probs=235.8
Q ss_pred CHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 05787507898778239799999999999986614677670799737885577899999986189853125764433467
Q gi|254780552|r 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95 (334)
Q Consensus 16 ~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~d 95 (334)
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA-v~~gvkd 88 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA-VTSGVKD 88 (436)
T ss_pred CCHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC-CCCCHHH
T ss_conf 676777097778785571866189943899996--4998605777899988889999998761776699515-2346799
Q ss_pred HHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC--CC
Q ss_conf 66666641------01637888757616989999999986347510025678765200046674005520455433--55
Q gi|254780552|r 96 LAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LT 167 (334)
Q Consensus 96 l~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~--l~ 167 (334)
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i--------------------ilIGATTENPsF~ln 148 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI--------------------ILIGATTENPSFELN 148 (436)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE--------------------EEEECCCCCCCEEEC
T ss_conf 999999999987258834998722533374456551033248868--------------------999626789871403
Q ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC--C-----CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 45442012067326454799999877765412--1-----0111111123320221015678877754333455415886
Q gi|254780552|r 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT--G-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 (334)
Q Consensus 168 ~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~--~-----i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~ 240 (334)
T Consensus 149 ~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~--~~~ 225 (436)
T COG2256 149 PALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEP--DEV 225 (436)
T ss_pred HHHHHHHH-EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC--CCC
T ss_conf 88861104-156516998999999999986541377765566888999999986286199998899999986277--752
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH--HHH
Q ss_conf 427787876542100000046776889999997518662069999998287456746789999998343058718--999
Q gi|254780552|r 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRL 318 (334)
Q Consensus 241 i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr--gRr 318 (334)
T Consensus 226 ~~~~~l~~~l~~-----------------~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylaRmi~~GeDp~yiARR 288 (436)
T COG2256 226 LILELLEEILQR-----------------RSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARR 288 (436)
T ss_pred CCHHHHHHHHHH-----------------HHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 479999999865-----------------520567776347899999998612688378999999999668878999999
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999888664888889
Q gi|254780552|r 319 LMPIAWQHLGIDIPH 333 (334)
Q Consensus 319 L~~~a~EdiGla~P~ 333 (334)
T Consensus 289 lv~~AsEDIGlAdP~ 303 (436)
T COG2256 289 LVRIASEDIGLADPN 303 (436)
T ss_pred HHHHHHHHCCCCCHH
T ss_conf 999987422578836