HHsearch alignment for GI: 254780552 and conserved domain: COG2842
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only].
Probab=97.25 E-value=0.0021 Score=40.36 Aligned_cols=200 Identities=18% Similarity=0.156 Sum_probs=92.1
Q ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH------
Q ss_conf 75078987782397999999999999866146776707997378855778999999861898531257644334------
Q gi|254780552|r 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------ 93 (334)
Q Consensus 20 ~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~------ 93 (334)
T Consensus 64 q~~~~~~~~~~l~tkt~r~~~~~~~~A-~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 64 QAALEKLAPDFLETKTVRRIFFRTRPA-SKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILII 139 (297)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCC---EEEEECCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 335554664320350247675420555-51685---47886332200689998653358641361588136788999999
Q ss_pred ------------HHHHHHH-HH-HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf ------------6766666-64-101637888757616989999999986347510025678765200046674005520
Q gi|254780552|r 94 ------------GDLAALL-TN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 94 ------------~dl~~~~-~~-~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
T Consensus 140 ~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~------------------~vLvG~ 201 (297)
T COG2842 140 CAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG------------------VVLVGM 201 (297)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCE------------------EEEECC
T ss_conf 99874014216888899999997157652665032125868999999988750815------------------998367
Q ss_pred ------CCCCCCCCHHHHHC--CCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf ------45543355454420--1206732645479999987776541210111111123320221015678877754333
Q gi|254780552|r 160 ------TTRVGLLTNPLQDR--FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 (334)
Q Consensus 160 ------Tt~~~~l~~~l~sR--~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d 231 (334)
T Consensus 202 prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 202 PRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 6888516640578999998756676553320536888999986176----326999999999600157689999860144
Q ss_pred HHHHHCCCCCCHHH
Q ss_conf 45541588642778
Q gi|254780552|r 232 FAEVAHAKTITREI 245 (334)
Q Consensus 232 ~a~~~~~~~i~~~~ 245 (334)
T Consensus 278 ~a~~~~~~~~~~~v 291 (297)
T COG2842 278 TARSNGIKDIDKPV 291 (297)
T ss_pred HHHHCCCCCCCHHH
T ss_conf 54422653200689