HHsearch alignment for GI: 254780552 and conserved domain: KOG1968
>KOG1968 consensus.
Probab=99.33 E-value=4.9e-12 Score=93.14 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=127.6
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHC-------C--CCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 5787507898778239799999999999986614-------6--77670--79973788557789999998618985312
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR-------A--EALDH--VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~-------~--~~~~h--~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf 54311265307766335203666665887622133354002686156677887317887772056766301206540104
Q ss_pred CCCCCCCHHHHHHHHHH--------------------HHCCCHHHHHHHHHCCH---HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 57644334676666664--------------------10163788875761698---99999999863475100256787
Q gi|254780552|r 86 SGPVIAKAGDLAALLTN--------------------LEDRDVLFIDEIHRLSI---IVEEILYPAMEDFQLDLMVGEGP 142 (334)
Q Consensus 86 s~~~~~~~~dl~~~~~~--------------------~~~~~vlfiDEihrl~~---~~q~~Ll~~mE~~~i~i~~~~~~ 142 (334)
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks---------- 458 (871)
T KOG1968 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS---------- 458 (871)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC----------
T ss_conf 7543344227776640244664000111111330004666069997425544200013699999999863----------
Q ss_pred CCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 65200046674005520455433554544201206732645479999987776541210111111123320221015678
Q gi|254780552|r 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 (334)
Q Consensus 143 ~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~A 222 (334)
T Consensus 459 ---~-----~P--iv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~ 528 (871)
T KOG1968 459 ---S-----RP--LVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQI 528 (871)
T ss_pred ---C-----CC--EEEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCHHHH
T ss_conf ---5-----77--6887337777665202232002340488577777666533024642417278899987506479999
Q ss_pred HHHHHHH
Q ss_conf 8777543
Q gi|254780552|r 223 GRLLRRV 229 (334)
Q Consensus 223 lnlLe~v 229 (334)
T Consensus 529 i~~lq~~ 535 (871)
T KOG1968 529 IMQLQFW 535 (871)
T ss_pred HHHHHHH
T ss_conf 9877644