HHsearch alignment for GI: 254780552 and conserved domain: KOG1968

>KOG1968 consensus.
Probab=99.33  E-value=4.9e-12  Score=93.14  Aligned_cols=193  Identities=20%  Similarity=0.245  Sum_probs=127.6

Q ss_pred             HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHC-------C--CCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             5787507898778239799999999999986614-------6--77670--79973788557789999998618985312
Q gi|254780552|r   17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR-------A--EALDH--VLFVGPPGLGKTTLAQVVARELGVNFRST   85 (334)
Q Consensus        17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~-------~--~~~~h--~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~   85 (334)
T Consensus       309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~  388 (871)
T KOG1968         309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK  388 (871)
T ss_pred             CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf             54311265307766335203666665887622133354002686156677887317887772056766301206540104


Q ss_pred             CCCCCCCHHHHHHHHHH--------------------HHCCCHHHHHHHHHCCH---HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             57644334676666664--------------------10163788875761698---99999999863475100256787
Q gi|254780552|r   86 SGPVIAKAGDLAALLTN--------------------LEDRDVLFIDEIHRLSI---IVEEILYPAMEDFQLDLMVGEGP  142 (334)
Q Consensus        86 s~~~~~~~~dl~~~~~~--------------------~~~~~vlfiDEihrl~~---~~q~~Ll~~mE~~~i~i~~~~~~  142 (334)
T Consensus       389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks----------  458 (871)
T KOG1968         389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS----------  458 (871)
T ss_pred             CCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC----------
T ss_conf             7543344227776640244664000111111330004666069997425544200013699999999863----------


Q ss_pred             CCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             65200046674005520455433554544201206732645479999987776541210111111123320221015678
Q gi|254780552|r  143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA  222 (334)
Q Consensus       143 ~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~A  222 (334)
T Consensus       459 ---~-----~P--iv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~  528 (871)
T KOG1968         459 ---S-----RP--LVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQI  528 (871)
T ss_pred             ---C-----CC--EEEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCHHHH
T ss_conf             ---5-----77--6887337777665202232002340488577777666533024642417278899987506479999


Q ss_pred             HHHHHHH
Q ss_conf             8777543
Q gi|254780552|r  223 GRLLRRV  229 (334)
Q Consensus       223 lnlLe~v  229 (334)
T Consensus       529 i~~lq~~  535 (871)
T KOG1968         529 IMQLQFW  535 (871)
T ss_pred             HHHHHHH
T ss_conf             9877644