HHsearch alignment for GI: 254780552 and conserved domain: PRK00080

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=100.00  E-value=0  Score=674.09  Aligned_cols=326  Identities=64%  Similarity=1.031  Sum_probs=317.4

Q ss_pred             HHCCCCCCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             10268444412057875078987782397999999999999866146776707997378855778999999861898531
Q gi|254780552|r    5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS   84 (334)
Q Consensus         5 ~~~~~~~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~   84 (334)
T Consensus         2 ~~~~~~~~~~~~~~~~~lRP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~   81 (328)
T PRK00080          2 ERLISPEVSPEDEFERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI   81 (328)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf             76558888873000005598857663595999999999999999649998805765889988999999999986888156


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf             25764433467666666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r   85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG  164 (334)
Q Consensus        85 ~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~  164 (334)
T Consensus        82 tsGP~lek~~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g  161 (328)
T PRK00080         82 TSGPALEKAGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG  161 (328)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf             24500167478999996088787676506532488899885798775234578647865324555899834740136766


Q ss_pred             CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             35545442012067326454799999877765412101111111233202210156788777543334554158864277
Q gi|254780552|r  165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE  244 (334)
Q Consensus       165 ~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~  244 (334)
T Consensus       162 ~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDfa~v~~~~~I~~~  241 (328)
T PRK00080        162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITRE  241 (328)
T ss_pred             CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             57767897579336634589999999999999983988789999999986389839999999999999998379965999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87876542100000046776889999997518662069999998287456746789999998343058718999999888
Q gi|254780552|r  245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW  324 (334)
Q Consensus       245 ~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~  324 (334)
T Consensus       242 ~~~~aL~~l~ID~~GLd~~Dr~~L~~l~~~f~GgPVGl~tLAa~lge~~~TIEdv~EPyLiq~G~i~RTprGR~~T~~a~  321 (328)
T PRK00080        242 IADKALDMLGVDELGLDEMDRKYLLTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGRVATPKAY  321 (328)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             99999995698634899889999999998529977009999999779821688875189988367010885477559999


Q ss_pred             HHCCCC
Q ss_conf             664888
Q gi|254780552|r  325 QHLGID  330 (334)
Q Consensus       325 EdiGla  330 (334)
T Consensus       322 ~hLg~~  327 (328)
T PRK00080        322 EHLGLN  327 (328)
T ss_pred             HHCCCC
T ss_conf             974999