HHsearch alignment for GI: 254780552 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=100.00 E-value=0 Score=674.09 Aligned_cols=326 Identities=64% Similarity=1.031 Sum_probs=317.4
Q ss_pred HHCCCCCCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 10268444412057875078987782397999999999999866146776707997378855778999999861898531
Q gi|254780552|r 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
T Consensus 2 ~~~~~~~~~~~~~~~~~lRP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~ 81 (328)
T PRK00080 2 ERLISPEVSPEDEFERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 76558888873000005598857663595999999999999999649998805765889988999999999986888156
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 25764433467666666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 85 ~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
T Consensus 82 tsGP~lek~~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g 161 (328)
T PRK00080 82 TSGPALEKAGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG 161 (328)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf 24500167478999996088787676506532488899885798775234578647865324555899834740136766
Q ss_pred CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 35545442012067326454799999877765412101111111233202210156788777543334554158864277
Q gi|254780552|r 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 (334)
Q Consensus 165 ~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~ 244 (334)
T Consensus 162 ~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDfa~v~~~~~I~~~ 241 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITRE 241 (328)
T ss_pred CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 57767897579336634589999999999999983988789999999986389839999999999999998379965999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 87876542100000046776889999997518662069999998287456746789999998343058718999999888
Q gi|254780552|r 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 (334)
Q Consensus 245 ~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~ 324 (334)
T Consensus 242 ~~~~aL~~l~ID~~GLd~~Dr~~L~~l~~~f~GgPVGl~tLAa~lge~~~TIEdv~EPyLiq~G~i~RTprGR~~T~~a~ 321 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLLTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGRVATPKAY 321 (328)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999995698634899889999999998529977009999999779821688875189988367010885477559999
Q ss_pred HHCCCC
Q ss_conf 664888
Q gi|254780552|r 325 QHLGID 330 (334)
Q Consensus 325 EdiGla 330 (334)
T Consensus 322 ~hLg~~ 327 (328)
T PRK00080 322 EHLGLN 327 (328)
T ss_pred HHCCCC
T ss_conf 974999