HHsearch alignment for GI: 254780552 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=100.00  E-value=9.7e-44  Score=287.00  Aligned_cols=210  Identities=28%  Similarity=0.350  Sum_probs=170.5

Q ss_pred             CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-----CCCCCCC
Q ss_conf             12057875078987782397999999999999866146776707997378855778999999861898-----5312576
Q gi|254780552|r   14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-----FRSTSGP   88 (334)
Q Consensus        14 ~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~~~s~~   88 (334)
T Consensus         2 ~~~lW~eKYRP~~l~di~g~~~~~~~L~~~i~~-----~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnas   76 (318)
T PRK00440          2 MEEIWVEKYRPRSLDEVVGQEEIVERLKSFVKE-----KNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNAS   76 (318)
T ss_pred             CHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             423564601989899941969999999999987-----998669888959988999999999997698643476895164


Q ss_pred             CCCCHHHHHHHHHH---H---H--CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC
Q ss_conf             44334676666664---1---0--16378887576169899999999863475100256787652000466740055204
Q gi|254780552|r   89 VIAKAGDLAALLTN---L---E--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT  160 (334)
Q Consensus        89 ~~~~~~dl~~~~~~---~---~--~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT  160 (334)
T Consensus        77 d~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~------------------~~~fil~~  138 (318)
T PRK00440         77 DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQ------------------TTRFILSC  138 (318)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC------------------CCEEEEEC
T ss_conf             566717899999999972677899738999868553225567888764310566------------------62588634


Q ss_pred             CCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             55433554544201206732645479999987776541210111111123320221015678877754333455415886
Q gi|254780552|r  161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT  240 (334)
Q Consensus       161 t~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~  240 (334)
T Consensus       139 n~~~kii~~i~SRc~-~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~~~-----~~~~~  212 (318)
T PRK00440        139 NYSSKIIDPIQSRCA-VFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQAAA-----ATGKE  212 (318)
T ss_pred             CCCCCCCCCHHHHHE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-----HCCCC
T ss_conf             883337615565510-111578999999999999999859998999999999864998999999999999-----74898


Q ss_pred             CCHHHHHHHHHH
Q ss_conf             427787876542
Q gi|254780552|r  241 ITREIADAALLR  252 (334)
Q Consensus       241 i~~~~~~~~l~~  252 (334)
T Consensus       213 it~~~v~~~~~~  224 (318)
T PRK00440        213 VTEEAVYKITGT  224 (318)
T ss_pred             CCHHHHHHHHCC
T ss_conf             789999999769