HHsearch alignment for GI: 254780552 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=100.00 E-value=9.7e-44 Score=287.00 Aligned_cols=210 Identities=28% Similarity=0.350 Sum_probs=170.5
Q ss_pred CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-----CCCCCCC
Q ss_conf 12057875078987782397999999999999866146776707997378855778999999861898-----5312576
Q gi|254780552|r 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-----FRSTSGP 88 (334)
Q Consensus 14 ~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~~~s~~ 88 (334)
T Consensus 2 ~~~lW~eKYRP~~l~di~g~~~~~~~L~~~i~~-----~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnas 76 (318)
T PRK00440 2 MEEIWVEKYRPRSLDEVVGQEEIVERLKSFVKE-----KNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNAS 76 (318)
T ss_pred CHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 423564601989899941969999999999987-----998669888959988999999999997698643476895164
Q ss_pred CCCCHHHHHHHHHH---H---H--CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC
Q ss_conf 44334676666664---1---0--16378887576169899999999863475100256787652000466740055204
Q gi|254780552|r 89 VIAKAGDLAALLTN---L---E--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 (334)
Q Consensus 89 ~~~~~~dl~~~~~~---~---~--~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT 160 (334)
T Consensus 77 d~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~------------------~~~fil~~ 138 (318)
T PRK00440 77 DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQ------------------TTRFILSC 138 (318)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC------------------CCEEEEEC
T ss_conf 566717899999999972677899738999868553225567888764310566------------------62588634
Q ss_pred CCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55433554544201206732645479999987776541210111111123320221015678877754333455415886
Q gi|254780552|r 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 (334)
Q Consensus 161 t~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~ 240 (334)
T Consensus 139 n~~~kii~~i~SRc~-~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~~~-----~~~~~ 212 (318)
T PRK00440 139 NYSSKIIDPIQSRCA-VFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQAAA-----ATGKE 212 (318)
T ss_pred CCCCCCCCCHHHHHE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-----HCCCC
T ss_conf 883337615565510-111578999999999999999859998999999999864998999999999999-----74898
Q ss_pred CCHHHHHHHHHH
Q ss_conf 427787876542
Q gi|254780552|r 241 ITREIADAALLR 252 (334)
Q Consensus 241 i~~~~~~~~l~~ 252 (334)
T Consensus 213 it~~~v~~~~~~ 224 (318)
T PRK00440 213 VTEEAVYKITGT 224 (318)
T ss_pred CCHHHHHHHHCC
T ss_conf 789999999769