HHsearch alignment for GI: 254780552 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.95 E-value=7.4e-27 Score=183.75 Aligned_cols=213 Identities=26% Similarity=0.333 Sum_probs=154.5
Q ss_pred CCC-CHHHHCCHHHHHHHHHHHHHHHHHC-------C-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-
Q ss_conf 789-8778239799999999999986614-------6-77670799737885577899999986189853125764433-
Q gi|254780552|r 23 RPR-TLEEFTGQVEACSNLKVFIEAAKAR-------A-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 (334)
Q Consensus 23 RP~-~l~dviGQ~~~~~~l~~~i~a~~~~-------~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~- 92 (334)
T Consensus 126 ~P~v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk 205 (390)
T PRK03992 126 SPDVTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 205 (390)
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 99998466149899999999999998659899997699999727868989997899999999874888799667997524
Q ss_pred -----HHHHHHHHHHHH--CCCHHHHHHHHHCCHH-----------HHH---HHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf -----467666666410--1637888757616989-----------999---9999863475100256787652000466
Q gi|254780552|r 93 -----AGDLAALLTNLE--DRDVLFIDEIHRLSII-----------VEE---ILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 93 -----~~dl~~~~~~~~--~~~vlfiDEihrl~~~-----------~q~---~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
T Consensus 206 ~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~----------~------~ 269 (390)
T PRK03992 206 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD----------P------R 269 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC----------C------C
T ss_conf 54179999999999999709908971432566335677888620889999999999744877----------7------7
Q ss_pred CCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 740055204554335545442--0120673264547999998777654121011111-11233202210-1567887775
Q gi|254780552|r 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSRG-TPRIAGRLLR 227 (334)
Q Consensus 152 ~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-al~~ia~~s~G-d~R~AlnlLe 227 (334)
T Consensus 270 ~~V~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~--~l~~dvdl~~lA~~T~G~SGADI~~lc~ 347 (390)
T PRK03992 270 GNVKIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDLEELAELTEGASGADLKAICT 347 (390)
T ss_pred CCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 88279960698100597775477652388708949999999999984799--9998889999997687998999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 43334554158864277878765421
Q gi|254780552|r 228 RVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 228 ~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
T Consensus 348 EA~m~Air~~r~~i~~~Df~~Ai~kv 373 (390)
T PRK03992 348 EAGMFAIRDDRTEVTMEDFLKAIEKV 373 (390)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999998589860899999999999