HHsearch alignment for GI: 254780552 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=99.97 E-value=4.1e-29 Score=197.55 Aligned_cols=148 Identities=20% Similarity=0.113 Sum_probs=104.8
Q ss_pred EEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 05520455433554544201206732645479999987776541210111111123320221015678877754333455
Q gi|254780552|r 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 (334)
Q Consensus 155 ~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~ 234 (334)
T Consensus 677 ~~~~SCNYsSKIIePIQSRCa-vFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~aeGDMRkAIN~LQsa----- 750 (863)
T PRK04132 677 FVSHNCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYVAEGDMRRAINVLQAA----- 750 (863)
T ss_pred EEEEECCCCCCCCCHHHCCEE-EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH-----
T ss_conf 179866760407416655624-78836899999999999999974997677899999997567489999999999-----
Q ss_pred HHCCCCCCHHHHHHHHHHHH---CC------CCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH--HHHHH
Q ss_conf 41588642778787654210---00------000-46776889999997518662069999998287456746--78999
Q gi|254780552|r 235 VAHAKTITREIADAALLRLA---ID------KMG-FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE--DLIEP 302 (334)
Q Consensus 235 ~~~~~~i~~~~~~~~l~~~~---id------~~G-l~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~--daa~~ 302 (334)
T Consensus 751 a~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~-A~~~L~~l--l~~~GlS~~DII~~i~r~v~~l~ipe~~kv~ 827 (863)
T PRK04132 751 AALDTKITDENVFKVASRARPEDIREMMLLALKGNFLK-AREKLREI--LLKQGLSGEDVLVQMHREVFNLPIDEPKKVY 827 (863)
T ss_pred HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 86169878889999708999899999999997299899-99999999--9966969899999999999617998789999
Q ss_pred HHHHHHHCC
Q ss_conf 999834305
Q gi|254780552|r 303 YMIQQGFIQ 311 (334)
Q Consensus 303 yL~r~g~~~ 311 (334)
T Consensus 828 li~~ige~e 836 (863)
T PRK04132 828 LADKIGEYN 836 (863)
T ss_pred HHHHHHHHH
T ss_conf 999997667