HHsearch alignment for GI: 254780552 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=100.00 E-value=1.1e-40 Score=268.36 Aligned_cols=273 Identities=18% Similarity=0.220 Sum_probs=191.8
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 57875078987782397999999999999866146776707997378855778999999861898531257644334676
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl 96 (334)
T Consensus 3 ~WveKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I 82 (403)
T PRK04195 3 PWVEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVI 82 (403)
T ss_pred CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHH
T ss_conf 86402189989998588999999999999987399657469988939987999999999984998599771011478999
Q ss_pred HHHHHHH--------HCCCHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 6666641--------016378887576169899----9999998634751002567876520004667400552045543
Q gi|254780552|r 97 AALLTNL--------EDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 ~~~~~~~--------~~~~vlfiDEihrl~~~~----q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
T Consensus 83 ~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~------------------~P--iIli~Nd~~ 142 (403)
T PRK04195 83 ERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKAK------------------NP--IILTANDPY 142 (403)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC------------------CE--EEEEECCCC
T ss_conf 9999987606887788734999634344572444799999999985488------------------70--899826845
Q ss_pred C-CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 3-554544201206732645479999987776541210111111123320221015678877754333455415886427
Q gi|254780552|r 165 L-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 (334)
Q Consensus 165 ~-l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~ 243 (334)
T Consensus 143 ~~~~~~lrs~c~-~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~LQ~~-----~~~~~~~~~ 216 (403)
T PRK04195 143 DPSLRPLRNACL-MIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDLQAI-----AEGGGRITL 216 (403)
T ss_pred CCCHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH-----HCCCCCCCH
T ss_conf 567177997661-22179949999999999999976999999999999998797399999999999-----748997756
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHH
Q ss_conf 78787654210000004677688999999751866206999999828745674678999999834305-87189999998
Q gi|254780552|r 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ-RTPRGRLLMPI 322 (334)
Q Consensus 244 ~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~-~~prgRrL~~~ 322 (334)
T Consensus 217 ~~~~~~~----rd~------~~~if~~~~~if~~~-~~~~a~~~~~~~d--~dpd~~~~wi~eNip~~y~~~---~~~~~ 280 (403)
T PRK04195 217 DDVKTGE----RDR------EESIFEALDAVFKSR-NYDQALEASYDVD--EDPDDLIQWIDENIPKEYKDP---EDLAR 280 (403)
T ss_pred HHHHHHC----CCC------CCCHHHHHHHHHCCC-CHHHHHHHHHCCC--CCHHHHHHHHHHCCCCCCCCH---HHHHH
T ss_conf 6666413----523------143899999997569-8999999885247--998999999996286447999---99999
Q ss_pred HHHHCCCCC
Q ss_conf 886648888
Q gi|254780552|r 323 AWQHLGIDI 331 (334)
Q Consensus 323 a~EdiGla~ 331 (334)
T Consensus 281 a~~~ls~AD 289 (403)
T PRK04195 281 AYEALSRAD 289 (403)
T ss_pred HHHHHHHHH
T ss_conf 999998879