HHsearch alignment for GI: 254780552 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=100.00  E-value=1.1e-40  Score=268.36  Aligned_cols=273  Identities=18%  Similarity=0.220  Sum_probs=191.8

Q ss_pred             HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             57875078987782397999999999999866146776707997378855778999999861898531257644334676
Q gi|254780552|r   17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL   96 (334)
Q Consensus        17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl   96 (334)
T Consensus         3 ~WveKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I   82 (403)
T PRK04195          3 PWVEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVI   82 (403)
T ss_pred             CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHH
T ss_conf             86402189989998588999999999999987399657469988939987999999999984998599771011478999


Q ss_pred             HHHHHHH--------HCCCHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf             6666641--------016378887576169899----9999998634751002567876520004667400552045543
Q gi|254780552|r   97 AALLTNL--------EDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG  164 (334)
Q Consensus        97 ~~~~~~~--------~~~~vlfiDEihrl~~~~----q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~  164 (334)
T Consensus        83 ~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~------------------~P--iIli~Nd~~  142 (403)
T PRK04195         83 ERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKAK------------------NP--IILTANDPY  142 (403)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC------------------CE--EEEEECCCC
T ss_conf             9999987606887788734999634344572444799999999985488------------------70--899826845


Q ss_pred             C-CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             3-554544201206732645479999987776541210111111123320221015678877754333455415886427
Q gi|254780552|r  165 L-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR  243 (334)
Q Consensus       165 ~-l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~  243 (334)
T Consensus       143 ~~~~~~lrs~c~-~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~LQ~~-----~~~~~~~~~  216 (403)
T PRK04195        143 DPSLRPLRNACL-MIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDLQAI-----AEGGGRITL  216 (403)
T ss_pred             CCCHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH-----HCCCCCCCH
T ss_conf             567177997661-22179949999999999999976999999999999998797399999999999-----748997756


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHH
Q ss_conf             78787654210000004677688999999751866206999999828745674678999999834305-87189999998
Q gi|254780552|r  244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ-RTPRGRLLMPI  322 (334)
Q Consensus       244 ~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~-~~prgRrL~~~  322 (334)
T Consensus       217 ~~~~~~~----rd~------~~~if~~~~~if~~~-~~~~a~~~~~~~d--~dpd~~~~wi~eNip~~y~~~---~~~~~  280 (403)
T PRK04195        217 DDVKTGE----RDR------EESIFEALDAVFKSR-NYDQALEASYDVD--EDPDDLIQWIDENIPKEYKDP---EDLAR  280 (403)
T ss_pred             HHHHHHC----CCC------CCCHHHHHHHHHCCC-CHHHHHHHHHCCC--CCHHHHHHHHHHCCCCCCCCH---HHHHH
T ss_conf             6666413----523------143899999997569-8999999885247--998999999996286447999---99999


Q ss_pred             HHHHCCCCC
Q ss_conf             886648888
Q gi|254780552|r  323 AWQHLGIDI  331 (334)
Q Consensus       323 a~EdiGla~  331 (334)
T Consensus       281 a~~~ls~AD  289 (403)
T PRK04195        281 AYEALSRAD  289 (403)
T ss_pred             HHHHHHHHH
T ss_conf             999998879