HHsearch alignment for GI: 254780552 and conserved domain: PRK04841
>PRK04841 transcriptional regulator MalT; Provisional.
Probab=97.93 E-value=7.2e-05 Score=49.30 Aligned_cols=168 Identities=19% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-------------
Q ss_conf 0789877823979999999999998661467767079973788557789999998618985312576-------------
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------------- 88 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~------------- 88 (334)
T Consensus 8 ~pP~~~~~~v~R~rL~~~L~~~---~-----~~~l~lv~APaG~GKTtl~a~w~~~~~-~~~Wlsld~~d~~~~~f~~~l 78 (903)
T PRK04841 8 SRPVRLDHTVVRERLLAKLSGA---N-----NYRLVLVRSPAGYGKTTLASQWAAGKN-NVGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH---C-----CCCEEEEECCCCCCHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHH
T ss_conf 8999987825547799999851---5-----899799977999889999999983499-859985885448999999999
Q ss_pred ----------------CCCC---HHH-------HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ----------------4433---467-------66666641016378887576169899999999863475100256787
Q gi|254780552|r 89 ----------------VIAK---AGD-------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 (334)
Q Consensus 89 ----------------~~~~---~~d-------l~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~ 142 (334)
T Consensus 79 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~--------~~p 150 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAEKRQYASLTSLFAQLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLR--------HQP 150 (903)
T ss_pred HHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH--------HCC
T ss_conf 999998565433112311355665549999999999975589986999868364888689999999998--------389
Q ss_pred CCCEEECCCCCCEEEECCC-CCCCCCHHHHHCCCCEEECCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 6520004667400552045-543355454420120673264----54799999877765412101111111233202210
Q gi|254780552|r 143 SARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIRLNF----YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 143 ~a~~~~~~~~~f~lI~ATt-~~~~l~~~l~sR~~~~~~~~~----~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
T Consensus 151 ---------~~l~lvl~sR~~p~l~l~~l~~~-~~l~~i~~~dL~Ft~~E~~~~~~~---~~g~~l~~~~~~~l~~~TeG 217 (903)
T PRK04841 151 ---------ENLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQ---RLSSPIEAAESSRLCDRVEG 217 (903)
T ss_pred ---------CCEEEEEEECCCCCCCHHHHHHC-CEEEEECHHHCCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHHCC
T ss_conf ---------88389987689998752457745-956998688759999999999986---25999999999999997087
Q ss_pred CH
Q ss_conf 15
Q gi|254780552|r 218 TP 219 (334)
Q Consensus 218 d~ 219 (334)
T Consensus 218 W~ 219 (903)
T PRK04841 218 WP 219 (903)
T ss_pred HH
T ss_conf 89