HHsearch alignment for GI: 254780552 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=99.49 E-value=3.2e-13 Score=100.32 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=123.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH----
Q ss_conf 7782397999999999999866146776707997378855778999999861---898531257644334---676----
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL---- 96 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl---- 96 (334)
T Consensus 185 ~~elIG~S~~m~~l~~~i~~vA~---sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~ 261 (510)
T PRK05022 185 QGEMIGQSPAMQQLKKEIEVVAA---SDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHV 261 (510)
T ss_pred CCCEEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
T ss_conf 89752089999999999999968---999889889898139999999996688789985788899998567899865977
Q ss_pred HHHH-----------HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC
Q ss_conf 6666-----------64101637888757616989999999986347510025678765200046674005520455433
Q gi|254780552|r 97 AALL-----------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 (334)
Q Consensus 97 ~~~~-----------~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~ 165 (334)
T Consensus 262 kGaFtGA~~~r~G~fe~A-~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqr-vG~~---~~~~v---dvRIIAATnrdL~ 333 (510)
T PRK05022 262 KGAFTGAISNRSGKFELA-DGGTLFLDEIGELPLALQAKLLRVLQYGEIQR-VGSD---RSLRV---DVRVIAATNRDLR 333 (510)
T ss_pred CCCCCCCCCCCCCCEEEC-CCCEEEEECHHHCCHHHHHHHHHHHHCCEEEE-CCCC---CEEEE---EEEEEEECCCCHH
T ss_conf 788688655678810177-89879875745499999999999984795885-5899---46666---6899960783599
Q ss_pred -------CCHHHHHCCC-CEEECCCCC--HHHHHHH----HHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q ss_conf -------5545442012-067326454--7999998----777654121---011111112332022-101567887775
Q gi|254780552|r 166 -------LTNPLQDRFG-IPIRLNFYE--IEDLKTI----VQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLLR 227 (334)
Q Consensus 166 -------l~~~l~sR~~-~~~~~~~~~--~~el~~i----l~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlLe 227 (334)
T Consensus 334 ~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvIe 413 (510)
T PRK05022 334 EEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVIS 413 (510)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99883963899998762040348086555540999999999999998298989888999999970999978999999999
Q ss_pred HHHHHHHH
Q ss_conf 43334554
Q gi|254780552|r 228 RVRDFAEV 235 (334)
Q Consensus 228 ~v~d~a~~ 235 (334)
T Consensus 414 RA~lla~~ 421 (510)
T PRK05022 414 RAALLARA 421 (510)
T ss_pred HHHHHHCC
T ss_conf 99997156