HHsearch alignment for GI: 254780552 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=99.83 E-value=5e-20 Score=142.01 Aligned_cols=219 Identities=24% Similarity=0.361 Sum_probs=146.6
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHCCC---------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH-
Q ss_conf 87782-3979999999999998661467---------767079973788557789999998618985312576443346-
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKARAE---------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG- 94 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~~~---------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~- 94 (334)
T Consensus 12 ~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~TEvGY 91 (442)
T PRK05201 12 ELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91 (442)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 85360108277667877788777875316622123346431688788886678999999998489858752131000343
Q ss_pred ----------HHHH------------------------------------------------------------------
Q ss_conf ----------7666------------------------------------------------------------------
Q gi|254780552|r 95 ----------DLAA------------------------------------------------------------------ 98 (334)
Q Consensus 95 ----------dl~~------------------------------------------------------------------ 98 (334)
T Consensus 92 vGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~~Lr~G~Ldd~ 171 (442)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRKKLREGELDDK 171 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 56437889999999999999999999999999999999999985586555555545420236789999999865886655
Q ss_pred ----------------------------------------------------------------------HHHHHHCCCH
Q ss_conf ----------------------------------------------------------------------6664101637
Q gi|254780552|r 99 ----------------------------------------------------------------------LLTNLEDRDV 108 (334)
Q Consensus 99 ----------------------------------------------------------------------~~~~~~~~~v 108 (334)
T Consensus 172 ~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~eAi~~aEq~GI 251 (442)
T PRK05201 172 EIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQEAIERVEQNGI 251 (442)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 57886157777777788751556667998764027888740464699999999999998624889999999998876170
Q ss_pred HHHHHHHHCCH------------HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC----CCCCCCCHHHHH
Q ss_conf 88875761698------------99999999863475100256787652000466740055204----554335545442
Q gi|254780552|r 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLTNPLQD 172 (334)
Q Consensus 109 lfiDEihrl~~------------~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT----t~~~~l~~~l~s 172 (334)
T Consensus 252 VFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~t--K~G------~V~TdhILFIasGAFh~sKPSDLIPEl~G 323 (442)
T PRK05201 252 VFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVST--KYG------MVKTDHILFIASGAFHVAKPSDLIPELQG 323 (442)
T ss_pred EEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCC------CCCCCEEEEECCCCCCCCCCCHHHHHHCC
T ss_conf 4511465653035788989773307888788753885556--777------60255034550450014782022498717
Q ss_pred CCCCEEECCCCCHHHHHHHHHH--------H---HHHC--CCHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHH
Q ss_conf 0120673264547999998777--------6---5412--101111111233202210--------15678877754333
Q gi|254780552|r 173 RFGIPIRLNFYEIEDLKTIVQR--------G---AKLT--GLAVTDEAACEIAMRSRG--------TPRIAGRLLRRVRD 231 (334)
Q Consensus 173 R~~~~~~~~~~~~~el~~il~~--------~---~~~~--~i~~~~~al~~ia~~s~G--------d~R~AlnlLe~v~d 231 (334)
T Consensus 324 RlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~ 403 (442)
T PRK05201 324 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 403 (442)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 55058882449999999996786157899999998624967998479999999999985144766773788999999989
Q ss_pred ---HH--HHHC-CCCCCHHHHHHHHHH
Q ss_conf ---45--5415-886427787876542
Q gi|254780552|r 232 ---FA--EVAH-AKTITREIADAALLR 252 (334)
Q Consensus 232 ---~a--~~~~-~~~i~~~~~~~~l~~ 252 (334)
T Consensus 404 d~~Fe~p~~~~~~v~I~~~~V~~~l~~ 430 (442)
T PRK05201 404 DISFEAPDRSGEKITIDAAYVDEKLGD 430 (442)
T ss_pred HHCCCCCCCCCCEEEECHHHHHHHHHH
T ss_conf 861468899997799889999999988