HHsearch alignment for GI: 254780552 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=99.82 E-value=9.5e-20 Score=140.29 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=138.1
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHC--------CC---CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 87782-39799999999999986614--------67---76707997378855778999999861898531257644334
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKAR--------AE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~--------~~---~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
T Consensus 69 ~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEa 148 (411)
T PRK05342 69 HLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA 148 (411)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCC
T ss_conf 86214028488889999999999999860213356652134538998999977889999999986999899861200126
Q ss_pred H----HHHHHH----HHH------HCCCHHHHHHHHHCCH--------------HHHHHHHHHHHCCCCCCCC---CCCC
Q ss_conf 6----766666----641------0163788875761698--------------9999999986347510025---6787
Q gi|254780552|r 94 G----DLAALL----TNL------EDRDVLFIDEIHRLSI--------------IVEEILYPAMEDFQLDLMV---GEGP 142 (334)
Q Consensus 94 ~----dl~~~~----~~~------~~~~vlfiDEihrl~~--------------~~q~~Ll~~mE~~~i~i~~---~~~~ 142 (334)
T Consensus 149 GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp 228 (411)
T PRK05342 149 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 (411)
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCC
T ss_conf 74560799999999998288899883682888502345424788888777651248999999875871411888777787
Q ss_pred CCCEEECCCCCCEEEECCC--------------------------------------CCCC-----CCHHHHHCCCCEEE
Q ss_conf 6520004667400552045--------------------------------------5433-----55454420120673
Q gi|254780552|r 143 SARSVKINLSRFTLIAATT--------------------------------------RVGL-----LTNPLQDRFGIPIR 179 (334)
Q Consensus 143 ~a~~~~~~~~~f~lI~ATt--------------------------------------~~~~-----l~~~l~sR~~~~~~ 179 (334)
T Consensus 229 ~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~ 308 (411)
T PRK05342 229 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVAT 308 (411)
T ss_pred CCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf 76516761471799911553358999986357887677887664110005678762798788873883776146640546
Q ss_pred CCCCCHHHHHHHHHH--------H---HHHC--CCHHHHHHHHHHHCCC---CCCHHHHHHHHHHH
Q ss_conf 264547999998777--------6---5412--1011111112332022---10156788777543
Q gi|254780552|r 180 LNFYEIEDLKTIVQR--------G---AKLT--GLAVTDEAACEIAMRS---RGTPRIAGRLLRRV 229 (334)
Q Consensus 180 ~~~~~~~el~~il~~--------~---~~~~--~i~~~~~al~~ia~~s---~Gd~R~AlnlLe~v 229 (334)
T Consensus 309 L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~i 374 (411)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEV 374 (411)
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 244799999999658741599999999975496799868999999999998475745779999999