HHsearch alignment for GI: 254780552 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=315.52 Aligned_cols=209 Identities=22% Similarity=0.258 Sum_probs=172.4
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------------
Q ss_conf 787507898778239799999999999986614677670-79973788557789999998618985--------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF-------------- 82 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~-------------- 82 (334)
T Consensus 6 LyrkyRP~~f~dvvgQ~~v~~~L~n~i~~~~-----i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~ 80 (541)
T PRK05563 6 LYREWRPRTFEDVVGQEHITTTLKNQIINNR-----IAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICK 80 (541)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 8876489977662484999999999998499-----32045303879958999999999995799988898575148899
Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf ----------312576443346766666641------0163788875761698999999998634751002567876520
Q gi|254780552|r 83 ----------RSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 83 ----------~~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
T Consensus 81 ~i~~g~~~Dv~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEe--------------- 145 (541)
T PRK05563 81 KINEGLLMDVIEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEE--------------- 145 (541)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC---------------
T ss_conf 98568988736624444478899999997610487678705999977233899999999999854---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
T Consensus 146 ---Pp~~~~Filatte~~ki~~tI~SRcq-~f~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslL 221 (541)
T PRK05563 146 ---PPSNVIFILATTDPQKLPITILSRCQ-RFDFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSIL 221 (541)
T ss_pred ---CCCCCEEEEECCCCCCCCHHHHHHEE-EEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---87775699976984427455674213-57754389999999999999984999878999999974599778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 222 dQ~is----~~~~~it~~~v~~~lG~~~ 245 (541)
T PRK05563 222 DQAIS----MGDGKVDYDDVVSMLGLVT 245 (541)
T ss_pred HHHHH----HCCCCCCHHHHHHHHCCCC
T ss_conf 99998----3599866999999968999