HHsearch alignment for GI: 254780552 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=99.96 E-value=2.7e-29 Score=198.70 Aligned_cols=174 Identities=17% Similarity=0.293 Sum_probs=135.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCC--------CC---CCCCCCCH
Q ss_conf 8778239799999999999986614677670-799737885577899999986189853--------12---57644334
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFR--------ST---SGPVIAKA 93 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~~--------~~---s~~~~~~~ 93 (334)
T Consensus 2 ~f~~iiGq~~i~~~L~~~i~~~-----rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I-~v 75 (313)
T PRK05564 2 SFRTIIGHENIKNRIDNSIIKG-----KFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSI-GV 75 (313)
T ss_pred CHHHCCCHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC-CH
T ss_conf 8323268299999999999879-----98750432799985099999999999828997788986588633225699-98
Q ss_pred HHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCC
Q ss_conf 6766666641------0163788875761698999999998634751002567876520004667400552045543355
Q gi|254780552|r 94 GDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 (334)
Q Consensus 94 ~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~ 167 (334)
T Consensus 76 d~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEE----------PP--------~~t~fIL~t~~~~~lL 137 (313)
T PRK05564 76 DDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEE----------PP--------KGVFIILLCENLEQIL 137 (313)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCC----------CC--------CCEEEEEEECCHHHCC
T ss_conf 99999999984086258956999807777589999998455036----------89--------9858998649835475
Q ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 4544201206732645479999987776541210111111123320221015678877754
Q gi|254780552|r 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 (334)
Q Consensus 168 ~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~ 228 (334)
T Consensus 138 pTI~SRCQ-~~~f~~l~~~~i~~~L~~~~----~~~~~~~~~~~~~~s~G~~~~a~~~~~~ 193 (313)
T PRK05564 138 DTIKSRCQ-IYKLNRLSKEDIEKFISYKY----NDIDEENKNSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred CHHHCCCE-EEECCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 77870653-56689989999999999862----5899999999999829987999998405