HHsearch alignment for GI: 254780552 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=100.00 E-value=1.4e-45 Score=297.38 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=176.6
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf 7875078987782397999999999999866146776707-9973788557789999998618985312-----------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRST----------- 85 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~----------- 85 (334)
T Consensus 6 lark~rp~~f~~~~gq~~~~~~l~~~~~~~~-----~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~ 80 (705)
T PRK05648 6 LARKWRPRSFREMVGQTHVLKALINALDNQR-----LHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCR 80 (705)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 6553178757663281999999999997098-----63046500789888989999999986778999889787760046
Q ss_pred -------------CCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -------------5764433467666666410------163788875761698999999998634751002567876520
Q gi|254780552|r 86 -------------SGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 86 -------------s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
T Consensus 81 ~i~~~~~~d~~e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktlee--------------- 145 (705)
T PRK05648 81 EIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEE--------------- 145 (705)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCC---------------
T ss_conf 66248977634451554478899999998555177677457999842654179999999874047---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
T Consensus 146 ---pp~~v~f~~att~~~k~p~t~~src-~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~ 221 (705)
T PRK05648 146 ---PPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLT 221 (705)
T ss_pred ---CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---9754599984287353758999766-430236899999999999999975997789999999997489677799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 543334554158864277878765421
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
T Consensus 222 dq----~~~~~~~~~~~~~v~~mlg~~ 244 (705)
T PRK05648 222 DQ----AIAFGEGKVLAADVRAMLGTL 244 (705)
T ss_pred HH----HHHCCCCCCCHHHHHHHHCCC
T ss_conf 99----986068840799999985888