HHsearch alignment for GI: 254780552 and conserved domain: PRK05818
>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=99.62 E-value=1.7e-14 Score=108.15 Aligned_cols=178 Identities=11% Similarity=0.027 Sum_probs=128.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC-----C------CCCCC---CCC---------CCHHHHHHHHHH-----H--
Q ss_conf 6707997378855778999999861898-----5------31257---644---------334676666664-----1--
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVN-----F------RSTSG---PVI---------AKAGDLAALLTN-----L-- 103 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~------~~~s~---~~~---------~~~~dl~~~~~~-----~-- 103 (334)
T Consensus 8 ~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~e~ 87 (262)
T PRK05818 8 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 87 (262)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 85056644877646999999999862289999998886278675589997799716645577989999999982114002
Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCC
Q ss_conf 01637888757616989999999986347510025678765200046674005520455433554544201206732645
Q gi|254780552|r 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 (334)
Q Consensus 104 ~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~ 183 (334)
T Consensus 88 ~g~KV~II~~Ae~Mt~~AANALLKtLEE----------Pp~--------nt~fIL~t~~~~~LLPTIrSRC~-~~~~~~~ 148 (262)
T PRK05818 88 NGKKIYIIYGIEKLNKQSANSLLKLIEE----------PPK--------NTYGIFTTRNENNILNTILSRCV-QYVVLSK 148 (262)
T ss_pred CCCEEEEECCHHHHCHHHHHHHHHHHCC----------CCC--------CEEEEEEECCHHHCCCHHHHHCC-CCCCCCH
T ss_conf 8848999877787499999999986128----------987--------83899973881437308887701-4466643
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 4799999877765412101111111233202-2101567887775433345541588642778787654210
Q gi|254780552|r 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 184 ~~~el~~il~~~~~~~~i~~~~~al~~ia~~-s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 149 ~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~----~~i~~~n~~~~~~~~~~l~~~i~ 216 (262)
T PRK05818 149 EKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIE----TLINKKNKLIQIHKAWILFKTFS 216 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHCCCCCEEHHHHHHHHHCCC
T ss_conf 466788887408889876410110799998861676888999999----99875688433999999983135