HHsearch alignment for GI: 254780552 and conserved domain: PRK05818

>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=99.62  E-value=1.7e-14  Score=108.15  Aligned_cols=178  Identities=11%  Similarity=0.027  Sum_probs=128.1

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCCC-----C------CCCCC---CCC---------CCHHHHHHHHHH-----H--
Q ss_conf             6707997378855778999999861898-----5------31257---644---------334676666664-----1--
Q gi|254780552|r   54 LDHVLFVGPPGLGKTTLAQVVARELGVN-----F------RSTSG---PVI---------AKAGDLAALLTN-----L--  103 (334)
Q Consensus        54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~------~~~s~---~~~---------~~~~dl~~~~~~-----~--  103 (334)
T Consensus         8 ~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~e~   87 (262)
T PRK05818          8 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES   87 (262)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             85056644877646999999999862289999998886278675589997799716645577989999999982114002


Q ss_pred             HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCC
Q ss_conf             01637888757616989999999986347510025678765200046674005520455433554544201206732645
Q gi|254780552|r  104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY  183 (334)
Q Consensus       104 ~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~  183 (334)
T Consensus        88 ~g~KV~II~~Ae~Mt~~AANALLKtLEE----------Pp~--------nt~fIL~t~~~~~LLPTIrSRC~-~~~~~~~  148 (262)
T PRK05818         88 NGKKIYIIYGIEKLNKQSANSLLKLIEE----------PPK--------NTYGIFTTRNENNILNTILSRCV-QYVVLSK  148 (262)
T ss_pred             CCCEEEEECCHHHHCHHHHHHHHHHHCC----------CCC--------CEEEEEEECCHHHCCCHHHHHCC-CCCCCCH
T ss_conf             8848999877787499999999986128----------987--------83899973881437308887701-4466643


Q ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             4799999877765412101111111233202-2101567887775433345541588642778787654210
Q gi|254780552|r  184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA  254 (334)
Q Consensus       184 ~~~el~~il~~~~~~~~i~~~~~al~~ia~~-s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~  254 (334)
T Consensus       149 ~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~----~~i~~~n~~~~~~~~~~l~~~i~  216 (262)
T PRK05818        149 EKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIE----TLINKKNKLIQIHKAWILFKTFS  216 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHCCCCCEEHHHHHHHHHCCC
T ss_conf             466788887408889876410110799998861676888999999----99875688433999999983135