HHsearch alignment for GI: 254780552 and conserved domain: PRK05896
>PRK05896 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=1.5e-44 Score=291.93 Aligned_cols=212 Identities=23% Similarity=0.282 Sum_probs=173.7
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf 5787507898778239799999999999986614677670-79973788557789999998618985-------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF------------- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~------------- 82 (334)
T Consensus 5 alyrKYRPk~F~eIIGQe~iv~~L~nAI~~~R-----iaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC 79 (613)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (613)
T ss_pred CHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 12450179976552382999999999998499-----7622775589984889999999999669999999988888789
Q ss_pred -----------CCCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -----------312576443346766666641------016378887576169899999999863475100256787652
Q gi|254780552|r 83 -----------RSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 83 -----------~~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
T Consensus 80 ~~I~~g~h~DviEIdaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEE----------P--- 146 (613)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE----------P--- 146 (613)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCC----------C---
T ss_conf 998569999868840655578899999999708587579945999816221799999999985348----------9---
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 147 -----P~~viFIL~Ttep~KLLpTIlSRCQ-rf~Fkri~~~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlsl 220 (613)
T PRK05896 147 -----PKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSI 220 (613)
T ss_pred -----CCCCEEEEEECCHHHCCHHHHHCCC-CEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf -----8783799982881549376640355-0017889989999999999997399878999999999768848789889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 7543334554158864277878765421000
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLAID 256 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~id 256 (334)
T Consensus 221 LdQ~~~~----~~~~it~~~v~~~~g~~~~~ 247 (613)
T PRK05896 221 LDQLSTF----KNKKIDIEDINKTFGLVDNN 247 (613)
T ss_pred HHHHHHH----CCCCCCHHHHHHHHCCCCHH
T ss_conf 9999983----56886299999996777689