HHsearch alignment for GI: 254780552 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=99.71 E-value=2.4e-16 Score=119.48 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHCCCC----------------CCCCC--CC-CCCCHHHHHHHHHHH------HCC
Q ss_conf 76707-997378855778999999861898----------------53125--76-443346766666641------016
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARELGVN----------------FRSTS--GP-VIAKAGDLAALLTNL------EDR 106 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~----------------~~~~s--~~-~~~~~~dl~~~~~~~------~~~ 106 (334)
T Consensus 17 Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~i~~~p~~g~~ 96 (290)
T PRK05917 17 KVPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQIWIHPYEANY 96 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 96606876899986599999999999857899616889874689985996157778878678999999996418646882
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHH
Q ss_conf 37888757616989999999986347510025678765200046674005520455433554544201206732645479
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~ 186 (334)
T Consensus 97 KV~IId~Ad~Mn~~AaNALLKtLEE----------PP~--------~tvfILit~~~~~lLpTI~SRCQ-~I~i~~~--- 154 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLED----------PPK--------HSVIILTSAKPQRLPPTIRSRSL-SIHIPGE--- 154 (290)
T ss_pred EEEEECCHHHHCHHHHHHHHHHHCC----------CCC--------CEEEEEEECCHHHCCHHHHHCCC-EEECCCC---
T ss_conf 6999756776389999999997347----------987--------85999986992548237763351-1677762---
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 999987776541210111111123320221015
Q gi|254780552|r 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219 (334)
Q Consensus 187 el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~ 219 (334)
T Consensus 155 ------------e~~~i~~e~~~~l~~~a~g~~ 175 (290)
T PRK05917 155 ------------EKTLPSKEDIAYLIRYAQGKE 175 (290)
T ss_pred ------------CCCCCCHHHHHHHHHHHCCCH
T ss_conf ------------013478899999999846973