HHsearch alignment for GI: 254780552 and conserved domain: PRK06645
>PRK06645 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=309.16 Aligned_cols=212 Identities=23% Similarity=0.283 Sum_probs=177.6
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf 5787507898778239799999999999986614677670-79973788557789999998618985-------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF------------- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~------------- 82 (334)
T Consensus 10 ~la~KyRP~~f~~liGQ~~~~~~l~n~i~~~~-----~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~ 84 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEK 84 (507)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 64320079976562393999999999997399-----6634774587997889999999999679998888998888888
Q ss_pred ---------------CCCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---------------3125764433467666666410------1637888757616989999999986347510025678
Q gi|254780552|r 83 ---------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 (334)
Q Consensus 83 ---------------~~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~ 141 (334)
T Consensus 85 c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEe---------- 154 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE---------- 154 (507)
T ss_pred CHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHC----------
T ss_conf 7678998658999859963788888899999986355178767435899521422489999999997427----------
Q ss_pred CCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 76520004667400552045543355454420120673264547999998777654121011111112332022101567
Q gi|254780552|r 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 (334)
Q Consensus 142 ~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~ 221 (334)
T Consensus 155 --------pp~~~~Fi~atte~~kip~ti~srcq-~f~~~~i~~~~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RD 225 (507)
T PRK06645 155 --------PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKADIEALRIIAYKSEGSARD 225 (507)
T ss_pred --------CCCCEEEEEECCCHHHCCHHHHHHCE-EEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf --------86443899974853648378885432-787545997999999999999768777789999999855998678
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88777543334554158864277878765421
Q gi|254780552|r 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 222 AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
T Consensus 226 alslldqai~~~-~~~~~~I~~~~V~~MLGl~ 256 (507)
T PRK06645 226 AVSILDQAASMS-AKSDNIISPQVINQMLGLV 256 (507)
T ss_pred HHHHHHHHHHHH-CCCCCCCCHHHHHHHHCCC
T ss_conf 999999999975-4898702699999983899