HHsearch alignment for GI: 254780552 and conserved domain: PRK06674
>PRK06674 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=1.4e-45 Score=298.27 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=171.8
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-------------
Q ss_conf 7875078987782397999999999999866146776707-99737885577899999986189853-------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------- 83 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------- 83 (334)
T Consensus 6 LyrkyRP~~F~dvvGQ~~v~~~L~nai~~~r-----i~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~ 80 (563)
T PRK06674 6 LYRVFRPQKFEDVVGQEHVTKTLQNALLQEK-----VSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCL 80 (563)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 8876389976552480999999999998499-----65034312899868999999999985799999988776687899
Q ss_pred -----------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -----------12576443346766666641------0163788875761698999999998634751002567876520
Q gi|254780552|r 84 -----------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 84 -----------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
T Consensus 81 ~i~~g~~~DviEiDaasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEE----------PP--- 147 (563)
T PRK06674 81 GITNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEE----------PP--- 147 (563)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHC----------CC---
T ss_conf 98558998779852555578799999999826488678737999854563799999999998638----------87---
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
T Consensus 148 -----~~viFILaTtep~ki~~TI~SRCQ-rf~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiL 221 (563)
T PRK06674 148 -----GHVIFILATTEPHKIPPTIISRCQ-RFDFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLL 221 (563)
T ss_pred -----CCEEEEEECCCHHHCCHHHHHHHE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf -----564999965994758478873310-31278899999999999999984999878899999997699788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 222 dQ~~s----~~~~~i~~~~v~~~lG~~~ 245 (563)
T PRK06674 222 DQAIS----FSDERVTTEDVLAVTGAVS 245 (563)
T ss_pred HHHHH----HCCCCCCHHHHHHHHCCCC
T ss_conf 99997----1599768999999868998