HHsearch alignment for GI: 254780552 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=100.00 E-value=0 Score=300.14 Aligned_cols=209 Identities=23% Similarity=0.271 Sum_probs=178.2
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-------------
Q ss_conf 7875078987782397999999999999866146776707-99737885577899999986189853-------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------- 83 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------- 83 (334)
T Consensus 6 lark~rp~~f~~~vgq~~v~~~l~~a~~~~r-----~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~ 80 (696)
T PRK06872 6 LARKWRPKTFSEVVGQEHILTALSNGLKENR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCK 80 (696)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 7765188756452385999999999997198-----63047511789888889999999986789999999788862257
Q ss_pred -----------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -----------125764433467666666410------163788875761698999999998634751002567876520
Q gi|254780552|r 84 -----------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 84 -----------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktlee--------------- 145 (696)
T PRK06872 81 AIEEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEE--------------- 145 (696)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCC---------------
T ss_conf 67447877546750565578899999998454577677547999700544389999999875027---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
T Consensus 146 ---pp~~v~f~latt~~~k~p~tilsrc-~~f~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~ 221 (696)
T PRK06872 146 ---PPEYVKFLLATTDPQKLPITILSRC-MQFHLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLT 221 (696)
T ss_pred ---CCCCEEEEEECCCHHHCCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---9754489984386322748898766-530026899999999999999984997799999999997589567788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 222 d----qai~~~~g~~~~~~v~~mlg~~~ 245 (696)
T PRK06872 222 D----QAIAMSNANITLDVVSNMLGLLD 245 (696)
T ss_pred H----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 9----99997589616999999858887