HHsearch alignment for GI: 254780552 and conserved domain: PRK07133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=300.20 Aligned_cols=211 Identities=22% Similarity=0.274 Sum_probs=174.2
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
T Consensus 7 ~L~RKYRPk~F~EVIGQe~Vv~tL~nAI~~gR-----IaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~ 81 (718)
T PRK07133 7 ALYRKYRPKKFDEIKGQDHIIETLKNIIKSGK-----ISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE 81 (718)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 89987289975442285999999999997499-----7505862389986889999999999679999999997702143
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf ---------125764433467666666410------16378887576169899999999863475100256787652000
Q gi|254780552|r 84 ---------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK 148 (334)
Q Consensus 84 ---------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~ 148 (334)
T Consensus 82 ~~~~s~DViEIDAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEE----------------- 144 (718)
T PRK07133 82 NFNNNLDIIEMDAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEE----------------- 144 (718)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC-----------------
T ss_conf 047898737754556688899999999825588778724999966200799999999985027-----------------
Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 46674005520455433554544201206732645479999987776541210111111123320221015678877754
Q gi|254780552|r 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 (334)
Q Consensus 149 ~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~ 228 (334)
T Consensus 145 -PP~hvvFILaTTep~KIP~TIlSRCQ-rFdFkrI~~~~I~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQ 222 (718)
T PRK07133 145 -PPKHVIFILATTDVQKIPLTILSRVQ-RFNFRRISEDVIVHQLENILEKEKIKYEKNALKLIASLASGSLRDALSIADQ 222 (718)
T ss_pred -CCCCCEEEEEECCHHHCCHHHHHCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -98782799970882548487741220-3358889999999999999998599778999999999768848889879999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 333455415886427787876542100
Q gi|254780552|r 229 VRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 229 v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
T Consensus 223 v~----~f~ng~it~k~v~~~~Gl~~~ 245 (718)
T PRK07133 223 VS----IFGNGNITLKNVNELFGLVSN 245 (718)
T ss_pred HH----HHCCCCCCHHHHHHHHCCCCH
T ss_conf 99----854898729999999676557