HHsearch alignment for GI: 254780552 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=99.91 E-value=9e-24 Score=164.88 Aligned_cols=175 Identities=20% Similarity=0.238 Sum_probs=124.2
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------CCCC--CCCC----
Q ss_conf 8778239799999999999986614677670-79973788557789999998618985--------3125--7644----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF--------RSTS--GPVI---- 90 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~--------~~~s--~~~~---- 90 (334)
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~~----r-l~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~ 76 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQN----R-IAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE 76 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHCC----C-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEE
T ss_conf 8331259499999999999859----9-6744877899983299999999999857899997665587518999778860
Q ss_pred ---------------------------CCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
Q ss_conf ---------------------------3346766666641------0163788875761698999999998634751002
Q gi|254780552|r 91 ---------------------------AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 (334)
Q Consensus 91 ---------------------------~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~ 137 (334)
T Consensus 77 P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE------ 150 (314)
T PRK07399 77 PTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE------ 150 (314)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC------
T ss_conf 56200345455778987653026877787999999999973188568847999889787199999999986147------
Q ss_pred CCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 56787652000466740055204554335545442012067326454799999877765412101111111233202210
Q gi|254780552|r 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 138 ~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
T Consensus 151 ----P---------~~~~fILit~~~~~lLpTI~SRCQ-~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~---~A~G 213 (314)
T PRK07399 151 ----P---------GNGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKRLGDNINEILDHPELLA---LAQG 213 (314)
T ss_pred ----C---------CCCEEEEEECCHHHCCHHHHCCCE-EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH---HHCC
T ss_conf ----8---------785699997993649146641875-6338998999999999971664331027899998---8179
Q ss_pred CHHHHHHHHHH
Q ss_conf 15678877754
Q gi|254780552|r 218 TPRIAGRLLRR 228 (334)
Q Consensus 218 d~R~AlnlLe~ 228 (334)
T Consensus 214 spG~a~~~~~~ 224 (314)
T PRK07399 214 SPGAAIANIEQ 224 (314)
T ss_pred CHHHHHHHHHH
T ss_conf 97999999999