HHsearch alignment for GI: 254780552 and conserved domain: PRK08691
>PRK08691 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=302.17 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=178.0
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
T Consensus 5 vlark~RP~~F~e~vGQ~~v~~~L~nal~~~r-----l~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C 79 (704)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (704)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 77765188747564186999999999998199-----7523750278987888999999999679999999978777767
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
T Consensus 80 ~~i~~g~~~D~~EiDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEE-------------- 145 (704)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------------- 145 (704)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 878558998747742454458899999998534688678535999831544389999999986147--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 146 ----PP~~v~FilaTTdp~Klp~TIlSRC~-~f~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalsl 220 (704)
T PRK08691 146 ----PPEHVKFILATTDPHKVPVTVLSRCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSL 220 (704)
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----97560899854884647589998887-7102689999999999999998398568999999999757857779889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 221 ld----Qaia~~~g~~~~~~v~~mLG~~d 245 (704)
T PRK08691 221 LD----QAIALGSGKVAENDVRQMIGAVD 245 (704)
T ss_pred HH----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----99996489626999999858887