HHsearch alignment for GI: 254780552 and conserved domain: PRK08727

Probab=99.65  E-value=6.6e-15  Score=110.68  Aligned_cols=200  Identities=21%  Similarity=0.206  Sum_probs=136.6

Q ss_pred             CCHHHHC-CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9877823-979999999999998661467767079973788557789999998618---985312576443346766666
Q gi|254780552|r   25 RTLEEFT-GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAALL  100 (334)
Q Consensus        25 ~~l~dvi-GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl~~~~  100 (334)
T Consensus        16 ~tfdnFi~~~n~~~a~l~~~~-----~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~--~~~~~~~~l   88 (233)
T PRK08727         16 QRFDSYIAAPDGLLAQLQALA-----AGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQA--AAGRLRDAL   88 (233)
T ss_pred             CCHHHCCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHH--HHHHHHHHH
T ss_conf             242120678559999999874-----3888898999899999889999999999982799728844788--532025677


Q ss_pred             HHHHCCCHHHHHHHHHCC--HHHHHHHHHH----HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHHHH
Q ss_conf             641016378887576169--8999999998----63475100256787652000466740055204554335---54544
Q gi|254780552|r  101 TNLEDRDVLFIDEIHRLS--IIVEEILYPA----MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNPLQ  171 (334)
Q Consensus       101 ~~~~~~~vlfiDEihrl~--~~~q~~Ll~~----mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~l~  171 (334)
T Consensus        89 ~~le~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~--------------------ll~ts~~~P~~l~~~l~DL~  148 (233)
T PRK08727         89 EALEGRSLVALDGVDSIAGQREDEVALFDFHNRARAAGIT--------------------LLYTARQMPDGLALVLPDLR  148 (233)
T ss_pred             HHHCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCE--------------------EEEECCCCHHHHCCCHHHHH
T ss_conf             5310389789855011269827999999999999861983--------------------89977989566231002199


Q ss_pred             HCCC--CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             2012--06732645479999987776541210111111123320221015678877754333455415886427787876
Q gi|254780552|r  172 DRFG--IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA  249 (334)
Q Consensus       172 sR~~--~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~  249 (334)
T Consensus       149 SRL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~L-D~~SL~~kr~iTip~vk~v  227 (233)
T PRK08727        149 SRLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRL-DRESLAAKRRITVPFLRRV  227 (233)
T ss_pred             HHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHH
T ss_conf             999669228857889799999999999986999998999999985688999999999999-9999980898889999999


Q ss_pred             HHH
Q ss_conf             542
Q gi|254780552|r  250 LLR  252 (334)
Q Consensus       250 l~~  252 (334)
T Consensus       228 L~e  230 (233)
T PRK08727        228 LEE  230 (233)
T ss_pred             HHH
T ss_conf             972