HHsearch alignment for GI: 254780552 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=309.54 Aligned_cols=210 Identities=24% Similarity=0.277 Sum_probs=178.1
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~L~nal~~~r-----l~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C 79 (717)
T PRK08853 5 ALARKWRPTQFKEVVGQSHVLTALENALAHNR-----LHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATC 79 (717)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 77765179856551385999999999997099-----7405761088988898999999998678999999978887026
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
T Consensus 80 ~~i~~g~~~d~~EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEE-------------- 145 (717)
T PRK08853 80 KEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------- 145 (717)
T ss_pred HHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 767447877524540565678899999998555488778547999830544389999999876037--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 146 ----PP~hv~FilaTT~~~kip~TilSRc-~~f~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl 220 (717)
T PRK08853 146 ----PPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSL 220 (717)
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----8756489984387343738898765-44232689999999999999997598769999999999768837788889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 221 ~d----qaia~~~g~~~~~~v~~mlg~~d 245 (717)
T PRK08853 221 TD----QAIALGNGQVTTDIVSHMLGTLD 245 (717)
T ss_pred HH----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----99996589716999999858887