HHsearch alignment for GI: 254780552 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=98.07 E-value=4.2e-06 Score=56.80 Aligned_cols=91 Identities=27% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCCCCHHHHCCHH----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHH
Q ss_conf 0789877823979----999999999998661467767079973788557789999998618---985312576443346
Q gi|254780552|r 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAG 94 (334)
Q Consensus 22 lRP~~l~dviGQ~----~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~ 94 (334)
T Consensus 122 i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~~-~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~--~~ 198 (306)
T PRK08939 122 LLQATLADIDLDDLDRLDALMAALDFLEAYKP-GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEF--IR 198 (306)
T ss_pred HHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HH
T ss_conf 98098986488977899999999999997376-9888778898999998999999999999986992999875999--99
Q ss_pred HHH---------HHHHHHHCCCHHHHHHHH
Q ss_conf 766---------666641016378887576
Q gi|254780552|r 95 DLA---------ALLTNLEDRDVLFIDEIH 115 (334)
Q Consensus 95 dl~---------~~~~~~~~~~vlfiDEih 115 (334)
T Consensus 199 ~lK~s~~d~s~~~~i~~~k~~~vLiLDDiG 228 (306)
T PRK08939 199 ELKNAISDGSVKEKIDAVKEAPVLMLDDIG 228 (306)
T ss_pred HHHHHHCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 999986489889999998449989984446