HHsearch alignment for GI: 254780552 and conserved domain: PRK08939

>PRK08939 primosomal protein DnaI; Reviewed.
Probab=98.07  E-value=4.2e-06  Score=56.80  Aligned_cols=91  Identities=27%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             CCCCCHHHHCCHH----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHH
Q ss_conf             0789877823979----999999999998661467767079973788557789999998618---985312576443346
Q gi|254780552|r   22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAG   94 (334)
Q Consensus        22 lRP~~l~dviGQ~----~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~   94 (334)
T Consensus       122 i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~~-~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~--~~  198 (306)
T PRK08939        122 LLQATLADIDLDDLDRLDALMAALDFLEAYKP-GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEF--IR  198 (306)
T ss_pred             HHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HH
T ss_conf             98098986488977899999999999997376-9888778898999998999999999999986992999875999--99


Q ss_pred             HHH---------HHHHHHHCCCHHHHHHHH
Q ss_conf             766---------666641016378887576
Q gi|254780552|r   95 DLA---------ALLTNLEDRDVLFIDEIH  115 (334)
Q Consensus        95 dl~---------~~~~~~~~~~vlfiDEih  115 (334)
T Consensus       199 ~lK~s~~d~s~~~~i~~~k~~~vLiLDDiG  228 (306)
T PRK08939        199 ELKNAISDGSVKEKIDAVKEAPVLMLDDIG  228 (306)
T ss_pred             HHHHHHCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf             999986489889999998449989984446