HHsearch alignment for GI: 254780552 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=2.1e-31 Score=211.59 Aligned_cols=185 Identities=24% Similarity=0.358 Sum_probs=144.0
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------------
Q ss_conf 787507898778239799999999999986614677670-79973788557789999998618985--------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF-------------- 82 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~-------------- 82 (334)
T Consensus 13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gR-----l~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~ 87 (352)
T PRK09112 13 IDGVPSPSENNRLFGHEEARAFLAQAYREGR-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDP 87 (352)
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8999896446462786999999999998499-----65246535899808999999999998669986668655678887
Q ss_pred -----CCCC-C--CC---CC--------------CHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf -----3125-7--64---43--------------346766666641------0163788875761698999999998634
Q gi|254780552|r 83 -----RSTS-G--PV---IA--------------KAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 (334)
Q Consensus 83 -----~~~s-~--~~---~~--------------~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~ 131 (334)
T Consensus 88 ~~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEE 167 (352)
T PRK09112 88 ASPLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (352)
T ss_pred CCHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 87789999748999956553432202145433577799999999845488668806999818787469999999998534
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 75100256787652000466740055204554335545442012067326454799999877765412101111111233
Q gi|254780552|r 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 (334)
Q Consensus 132 ~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~i 211 (334)
T Consensus 168 ----------Pp--------~~~~fiLit~~~~~ll~TI~SRCq-~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l 227 (352)
T PRK09112 168 ----------PP--------ARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSKQGIS-AGEETEAL 227 (352)
T ss_pred ----------CC--------CCEEEEEEECCHHHCHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
T ss_conf ----------89--------874899886997777689997433-21488939899999999875126899-87999999
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 2022101567887775
Q gi|254780552|r 212 AMRSRGTPRIAGRLLR 227 (334)
Q Consensus 212 a~~s~Gd~R~AlnlLe 227 (334)
T Consensus 228 ~~~a~GS~~~Al~L~~ 243 (352)
T PRK09112 228 LQRSEGSVRKALLLLN 243 (352)
T ss_pred HHHHCCCHHHHHHHHC
T ss_conf 9870899889998744