HHsearch alignment for GI: 254780552 and conserved domain: PRK09112

>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=2.1e-31  Score=211.59  Aligned_cols=185  Identities=24%  Similarity=0.358  Sum_probs=144.0

Q ss_pred             HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------------
Q ss_conf             787507898778239799999999999986614677670-79973788557789999998618985--------------
Q gi|254780552|r   18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF--------------   82 (334)
Q Consensus        18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~--------------   82 (334)
T Consensus        13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gR-----l~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~   87 (352)
T PRK09112         13 IDGVPSPSENNRLFGHEEARAFLAQAYREGR-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDP   87 (352)
T ss_pred             CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             8999896446462786999999999998499-----65246535899808999999999998669986668655678887


Q ss_pred             -----CCCC-C--CC---CC--------------CHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             -----3125-7--64---43--------------346766666641------0163788875761698999999998634
Q gi|254780552|r   83 -----RSTS-G--PV---IA--------------KAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMED  131 (334)
Q Consensus        83 -----~~~s-~--~~---~~--------------~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~  131 (334)
T Consensus        88 ~~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEE  167 (352)
T PRK09112         88 ASPLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE  167 (352)
T ss_pred             CCHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf             87789999748999956553432202145433577799999999845488668806999818787469999999998534


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             75100256787652000466740055204554335545442012067326454799999877765412101111111233
Q gi|254780552|r  132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI  211 (334)
Q Consensus       132 ~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~i  211 (334)
T Consensus       168 ----------Pp--------~~~~fiLit~~~~~ll~TI~SRCq-~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l  227 (352)
T PRK09112        168 ----------PP--------ARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSKQGIS-AGEETEAL  227 (352)
T ss_pred             ----------CC--------CCEEEEEEECCHHHCHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
T ss_conf             ----------89--------874899886997777689997433-21488939899999999875126899-87999999


Q ss_pred             HCCCCCCHHHHHHHHH
Q ss_conf             2022101567887775
Q gi|254780552|r  212 AMRSRGTPRIAGRLLR  227 (334)
Q Consensus       212 a~~s~Gd~R~AlnlLe  227 (334)
T Consensus       228 ~~~a~GS~~~Al~L~~  243 (352)
T PRK09112        228 LQRSEGSVRKALLLLN  243 (352)
T ss_pred             HHHHCCCHHHHHHHHC
T ss_conf             9870899889998744