HHsearch alignment for GI: 254780552 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.92 E-value=1.2e-24 Score=170.13 Aligned_cols=217 Identities=27% Similarity=0.381 Sum_probs=147.4
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC----------CCCCCCC-------
Q ss_conf 98778239799999999999986614677670799737885577899999986189----------8531257-------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV----------NFRSTSG------- 87 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~----------~~~~~s~------- 87 (334)
T Consensus 188 ~D~~dv~Gq~~akraleIA--AAG-----gHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~ 260 (506)
T PRK09862 188 HDLSDVVGQEQGKRGLEIT--AAG-----GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQ 260 (506)
T ss_pred CCHHHHCCCHHHHHHHHHH--HCC-----CCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6756536979999999997--446-----886598769994598999775123899898999999999987189877775
Q ss_pred ----C-----------------CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf ----6-----------------4433467666666410163788875761698999999998634751002567876520
Q gi|254780552|r 88 ----P-----------------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 88 ----~-----------------~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
T Consensus 261 ~~~rPfR~PHHs~S~~aliGGG~~~~PGEI-----SLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~----~~ 331 (506)
T PRK09862 261 WRQRPFRSPHHSASLTAMVGGGAIPGPGEI-----SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR----AK 331 (506)
T ss_pred CCCCCEECCCCCCCHHHHHCCCCCCCCCCE-----EECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECC----CE
T ss_conf 466850378876547666379999999722-----213575788455000688899987762247759999668----67
Q ss_pred EECCCCCCEEEECCCCC---------------------CCCCHHHHHCCCCEEECCCCCHH-------------HHHHHH
Q ss_conf 00466740055204554---------------------33554544201206732645479-------------999987
Q gi|254780552|r 147 VKINLSRFTLIAATTRV---------------------GLLTNPLQDRFGIPIRLNFYEIE-------------DLKTIV 192 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~---------------------~~l~~~l~sR~~~~~~~~~~~~~-------------el~~il 192 (334)
T Consensus 332 ~~~P-A~F~LVaAmNPCPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~esS~~ir~rV 410 (506)
T PRK09862 332 ITYP-ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRV 410 (506)
T ss_pred EEEC-CHHHHEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9861-533111103788888899997778989999998656622130364799816899666632489898889999999
Q ss_pred HHH-------HHHCC-----------CHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 776-------54121-----------011111112---332022101567887775433345541588642778787654
Q gi|254780552|r 193 QRG-------AKLTG-----------LAVTDEAAC---EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 193 ~~~-------~~~~~-----------i~~~~~al~---~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
T Consensus 411 ~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riLrvARTIADL~g~~~i~~~Hi~eAl~ 490 (506)
T PRK09862 411 MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999855165657998999765499978999999999965957999999999999998555999999899999997
Q ss_pred HHHCCCC
Q ss_conf 2100000
Q gi|254780552|r 252 RLAIDKM 258 (334)
Q Consensus 252 ~~~id~~ 258 (334)
T Consensus 491 yR~~d~~ 497 (506)
T PRK09862 491 YRAIDRL 497 (506)
T ss_pred HHHHHHH
T ss_conf 1767799