HHsearch alignment for GI: 254780552 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=99.49 E-value=1.3e-12 Score=96.67 Aligned_cols=211 Identities=20% Similarity=0.222 Sum_probs=127.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHHH---
Q ss_conf 7782397999999999999866146776707997378855778999999861---898531257644334---6766---
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDLA--- 97 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl~--- 97 (334)
T Consensus 138 ~~~liG~S~am~~v~~~i~~~A~---s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~ 214 (441)
T PRK10365 138 QFGMVGKSPAMQHLLSEIALVAP---SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHE 214 (441)
T ss_pred CCCCEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
T ss_conf 57866689999999999999848---899489989998109999999996578778980798789898455589861775
Q ss_pred -HHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--
Q ss_conf -666641----------0163788875761698999999998634751002567876520004667400552045543--
Q gi|254780552|r 98 -ALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-- 164 (334)
Q Consensus 98 -~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~-- 164 (334)
T Consensus 215 ~gaftga~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~----~~~~~~---d~RiIaat~~~l~~ 287 (441)
T PRK10365 215 KGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGS----NQTISV---DVRLIAATHRDLAA 287 (441)
T ss_pred CCCCCCCCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCEEEC---CCEEEECCCCCHHH
T ss_conf 56878965346898778899825502315299999999998777521000588----734413---63799837889999
Q ss_pred -----CCCHHHHHCCC-CEEECCCCC--HHHHHHHH----HHHHHHCCC---HHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q ss_conf -----35545442012-067326454--79999987----776541210---11111112332022-1015678877754
Q gi|254780552|r 165 -----LLTNPLQDRFG-IPIRLNFYE--IEDLKTIV----QRGAKLTGL---AVTDEAACEIAMRS-RGTPRIAGRLLRR 228 (334)
Q Consensus 165 -----~l~~~l~sR~~-~~~~~~~~~--~~el~~il----~~~~~~~~i---~~~~~al~~ia~~s-~Gd~R~AlnlLe~ 228 (334)
T Consensus 288 ~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ier 367 (441)
T PRK10365 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 (441)
T ss_pred HHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 98819825899988601113782600062009999999999999984999888899999999709999899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 3334554158864277878765
Q gi|254780552|r 229 VRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 229 v~d~a~~~~~~~i~~~~~~~~l 250 (334)
T Consensus 368 a~~~---~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 368 AVVL---LTGEYISERELPLAI 386 (441)
T ss_pred HHHH---CCCCCCCHHHCCHHH
T ss_conf 9995---789868846575433