HHsearch alignment for GI: 254780552 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=96.18 E-value=0.034 Score=32.94 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=58.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH-HH-C-CCC----------------------
Q ss_conf 7782397999999999999866146776707997378855778999999-86-1-898----------------------
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-RE-L-GVN---------------------- 81 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA-~~-l-~~~---------------------- 81 (334)
T Consensus 599 yeET~DQl~AI~eV~~DMes----~~PMD-RLiCGDVGfGKTEVA~RAAFkav~~gkQVavlvPTTiLA~QH~~tF~~Rf 673 (1148)
T PRK10689 599 FETTPDQAQAINAVLSDMCQ----PLAMD-RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1148)
T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 97876899999999877638----86774-15676888877999999999999639808998366223799999999876
Q ss_pred ------CCCCCCCCCCCHHHHHHHHHHHHCC---------------------CHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf ------5312576443346766666641016---------------------3788875761698999999998634751
Q gi|254780552|r 82 ------FRSTSGPVIAKAGDLAALLTNLEDR---------------------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 (334)
Q Consensus 82 ------~~~~s~~~~~~~~dl~~~~~~~~~~---------------------~vlfiDEihrl~~~~q~~Ll~~mE~~~i 134 (334)
T Consensus 674 ~~~pv~i~~LsR--f~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv~f~~LGLlIiDEEqrFGV~~KE~lk~l-~-~~v 749 (1148)
T PRK10689 674 ANWPVRIEMLSR--FRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAM-R-ADV 749 (1148)
T ss_pred HCCCCEEEEECC--CCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCEEEECCCHHCCHHHHHHHHHC-C-CCC
T ss_conf 415733775038--888999999999986699877620488866986546664378601021379999999722-8-998
Q ss_pred CCC-CCCCCCCCEEEC
Q ss_conf 002-567876520004
Q gi|254780552|r 135 DLM-VGEGPSARSVKI 149 (334)
Q Consensus 135 ~i~-~~~~~~a~~~~~ 149 (334)
T Consensus 750 dvLtltATPIPRTL~m 765 (1148)
T PRK10689 750 DILTLTATPIPRTLNM 765 (1148)
T ss_pred CEEEEECCCCHHHHHH
T ss_conf 7897625564469999