HHsearch alignment for GI: 254780552 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.86  E-value=2.1e-21  Score=150.39  Aligned_cols=232  Identities=20%  Similarity=0.263  Sum_probs=143.4

Q ss_pred             CCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             2057875078987782397999999999999866146776707-997378855778999999861898531257644334
Q gi|254780552|r   15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA   93 (334)
Q Consensus        15 ~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~   93 (334)
T Consensus       309 d~~dl~~A~~iLd~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~De  388 (784)
T PRK10787        309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE  388 (784)
T ss_pred             CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf             75699999998765430657799999999999986246778779964699877246999999985898699806887888


Q ss_pred             HHHHH------------HHHH---H-HCCCHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             67666------------6664---1-016378887576169899----99999986347510025678765200046674
Q gi|254780552|r   94 GDLAA------------LLTN---L-EDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVGEGPSARSVKINLSR  153 (334)
Q Consensus        94 ~dl~~------------~~~~---~-~~~~vlfiDEihrl~~~~----q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~  153 (334)
T Consensus       389 aeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~D---hyl~~~~DlS~  465 (784)
T PRK10787        389 AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSD---HYLEVDYDLSD  465 (784)
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCC---CEEECCCCHHH
T ss_conf             882564334344368389999997489885665003555224558998899998459765564000---32204645222


Q ss_pred             CEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHCCC--CCCHHH
Q ss_conf             005520455433554544201206732645479999987776----------54121011111112332022--101567
Q gi|254780552|r  154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----------AKLTGLAVTDEAACEIAMRS--RGTPRI  221 (334)
Q Consensus       154 f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~----------~~~~~i~~~~~al~~ia~~s--~Gd~R~  221 (334)
T Consensus       466 v~Fi~TaN~~~-ip~pLlDRmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~  543 (784)
T PRK10787        466 VMFVATSNSMN-IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS  543 (784)
T ss_pred             EEEEEECCCCC-CCHHHHHHEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             58997327677-8767763121-554116767889999997453999998289965674399999998753365444251


Q ss_pred             HHHHHHHHHHHHH---H--HCCC--CCCHHHHHHHHH
Q ss_conf             8877754333455---4--1588--642778787654
Q gi|254780552|r  222 AGRLLRRVRDFAE---V--AHAK--TITREIADAALL  251 (334)
Q Consensus       222 AlnlLe~v~d~a~---~--~~~~--~i~~~~~~~~l~  251 (334)
T Consensus       544 ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~lg  580 (784)
T PRK10787        544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG  580 (784)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHC
T ss_conf             6889999999999999707887855888999999829